PSIBLAST 2.11.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Stephen F.
Altschul, John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005)
"Protein database searches using compositionally adjusted
substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: uniprot_sprot.fasta
           572,214 sequences; 207,235,166 total letters

Results from round 1


Query= sp|Q96C10|DHX58_HUMAN ATP-dependent RNA helicase DHX58 OS=Homo
sapiens OX=9606 GN=DHX58 PE=1 SV=1

Length=678
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

sp|Q96C10|DHX58_HUMAN ATP-dependent RNA helicase DHX58 OS=Homo sa...  1410    0.0   
sp|Q99J87|DHX58_MOUSE ATP-dependent RNA helicase DHX58 OS=Mus mus...  1103    0.0   
sp|Q9BYX4|IFIH1_HUMAN Interferon-induced helicase C domain-contai...  528     8e-175
sp|Q8R5F7|IFIH1_MOUSE Interferon-induced helicase C domain-contai...  522     3e-172
sp|O95786|RIGI_HUMAN Antiviral innate immune response receptor RI...  317     3e-95 
sp|Q6Q899|RIGI_MOUSE Antiviral innate immune response receptor RI...  308     5e-92 
sp|Q9GLV6|RIGI_PIG Antiviral innate immune response receptor RIG-...  280     2e-81 
sp|Q7S8J7|DCL1_NEUCR Dicer-like protein 1 OS=Neurospora crassa (s...  135     2e-31 
sp|A2RAF3|DCL1_ASPNC Dicer-like protein 1 OS=Aspergillus niger (s...  130     8e-30 
sp|A1DE13|DCL1_NEOFI Dicer-like protein 1 OS=Neosartorya fischeri...  129     2e-29 
sp|Q4WVE3|DCL1_ASPFU Dicer-like protein 1 OS=Aspergillus fumigatu...  125     2e-28 
sp|Q2U6C4|DCL1_ASPOR Dicer-like protein 1 OS=Aspergillus oryzae (...  124     8e-28 
sp|A1CBC9|DCL1_ASPCL Dicer-like protein 1 OS=Aspergillus clavatus...  124     8e-28 
sp|Q0CW42|DCL1_ASPTN Dicer-like protein 1 OS=Aspergillus terreus ...  117     7e-26 
sp|Q0UI93|DCL1_PHANO Dicer-like protein 1 OS=Phaeosphaeria nodoru...  116     1e-25 
sp|Q58900|Y1505_METJA Putative ATP-dependent RNA helicase MJ1505 ...  108     3e-23 
sp|Q2VF18|DCL2_CRYPA Dicer-like protein 2 OS=Cryphonectria parasi...  109     3e-23 
sp|Q7XD96|DCL3B_ORYSJ Endoribonuclease Dicer homolog 3b OS=Oryza ...  104     1e-21 
sp|Q4WA22|DCL2_ASPFU Dicer-like protein 2 OS=Aspergillus fumigatu...  103     3e-21 
sp|Q1DKI1|DCL1_COCIM Dicer-like protein 1 OS=Coccidioides immitis...  102     3e-21 
sp|P0C5H7|DCL2_EMENI Dicer-like protein 2 OS=Emericella nidulans ...  101     1e-20 
sp|Q2H0G2|DCL1_CHAGB Dicer-like protein 1 OS=Chaetomium globosum ...  100     2e-20 
sp|A4RHU9|DCL2_PYRO7 Dicer-like protein 2 OS=Pyricularia oryzae (...  100     3e-20 
sp|Q9UT23|MPH1_SCHPO ATP-dependent DNA helicase fml1 OS=Schizosac...  99.8    3e-20 
sp|Q09884|DCR1_SCHPO Protein Dicer OS=Schizosaccharomyces pombe (...  99.8    4e-20 
sp|A4RKC3|DCL1_PYRO7 Dicer-like protein 1 OS=Pyricularia oryzae (...  99.4    5e-20 
sp|Q5N870|DCL3A_ORYSJ Endoribonuclease Dicer homolog 3a OS=Oryza ...  97.1    3e-19 
sp|A1D9Z6|DCL2_NEOFI Dicer-like protein 2 OS=Neosartorya fischeri...  96.3    4e-19 
sp|P34529|DCR1_CAEEL Endoribonuclease dcr-1 OS=Caenorhabditis ele...  94.4    2e-18 
sp|Q2VF19|DCL1_CRYPA Dicer-like protein 1 OS=Cryphonectria parasi...  89.7    4e-17 
sp|A4RN08|MPH1_PYRO7 ATP-dependent DNA helicase MPH1 OS=Pyricular...  89.7    4e-17 
sp|Q2UNX5|DCL2_ASPOR Dicer-like protein 2 OS=Aspergillus oryzae (...  89.4    5e-17 
sp|Q0CWI2|MPH1_ASPTN ATP-dependent DNA helicase mph1 OS=Aspergill...  88.6    9e-17 
sp|Q2URJ5|MPH1_ASPOR ATP-dependent DNA helicase mph1 OS=Aspergill...  88.2    1e-16 
sp|Q0CEI2|DCL2_ASPTN Dicer-like protein 2 OS=Aspergillus terreus ...  87.4    2e-16 
sp|Q8R418|DICER_MOUSE Endoribonuclease Dicer OS=Mus musculus OX=1...  86.3    6e-16 
sp|A1D4V5|MPH1_NEOFI ATP-dependent DNA helicase mph1 OS=Neosartor...  85.9    7e-16 
sp|Q4WKB5|MPH1_ASPFU ATP-dependent DNA helicase mph1 OS=Aspergill...  84.3    2e-15 
sp|B0XMV6|MPH1_ASPFC ATP-dependent DNA helicase mph1 OS=Aspergill...  84.3    2e-15 
sp|Q5A1A0|MPH1_CANAL ATP-dependent DNA helicase MPH1 OS=Candida a...  84.0    2e-15 
sp|A1CS00|MPH1_ASPCL ATP-dependent DNA helicase mph1 OS=Aspergill...  84.0    2e-15 
sp|A0MQH0|DICER_CRIGR Endoribonuclease Dicer OS=Cricetulus griseu...  83.6    4e-15 
sp|Q6TUI4|DICER_BOVIN Endoribonuclease Dicer OS=Bos taurus OX=991...  83.6    4e-15 
sp|Q8LMR2|DCL1_ORYSJ Endoribonuclease Dicer homolog 1 OS=Oryza sa...  83.2    5e-15 
sp|Q7SCC1|DCL2_NEUCR Dicer-like protein 2 OS=Neurospora crassa (s...  83.2    5e-15 
sp|Q25BN1|DICER_CHICK Endoribonuclease Dicer OS=Gallus gallus OX=...  82.4    8e-15 
sp|P84634|DCL4_ARATH Dicer-like protein 4 OS=Arabidopsis thaliana...  82.4    9e-15 
sp|Q9SP32|DCL1_ARATH Endoribonuclease Dicer homolog 1 OS=Arabidop...  82.4    1e-14 
sp|Q9UPY3|DICER_HUMAN Endoribonuclease Dicer OS=Homo sapiens OX=9...  81.3    2e-14 
sp|A2Q8R2|MPH1_ASPNC ATP-dependent DNA helicase mph1 OS=Aspergill...  80.9    2e-14 
sp|Q2HG76|MPH1_CHAGB ATP-dependent DNA helicase MPH1 OS=Chaetomiu...  80.5    3e-14 
sp|Q6TV19|DICER_DANRE Endoribonuclease Dicer OS=Danio rerio OX=79...  80.5    3e-14 
sp|A7LFZ6|DCL4_ORYSJ Endoribonuclease Dicer homolog 4 OS=Oryza sa...  79.7    6e-14 
sp|Q9HE09|MFH2_SCHPO Putative ATP-dependent DNA helicase fml2 OS=...  79.0    7e-14 
sp|B3DLA6|DICER_XENTR Endoribonuclease Dicer OS=Xenopus tropicali...  79.3    8e-14 
sp|Q7SDF3|MPH1_NEUCR ATP-dependent DNA helicase mph1 OS=Neurospor...  79.0    9e-14 
sp|Q8BGE5|FANCM_MOUSE Fanconi anemia group M protein homolog OS=M...  78.6    2e-13 
sp|Q3EBC8|DCL2_ARATH Endoribonuclease Dicer homolog 2 OS=Arabidop...  77.4    3e-13 
sp|Q1DY43|MPH1_COCIM ATP-dependent DNA helicase MPH1 OS=Coccidioi...  75.5    9e-13 
sp|A7EFH4|MPH1_SCLS1 ATP-dependent DNA helicase mph1 OS=Sclerotin...  75.1    1e-12 
sp|Q8IYD8|FANCM_HUMAN Fanconi anemia group M protein OS=Homo sapi...  74.7    2e-12 
sp|A6RIS1|MPH1_BOTFB ATP-dependent DNA helicase MPH1 OS=Botryotin...  73.6    4e-12 
sp|A2QX45|DCL22_ASPNC Dicer-like protein 2-2 OS=Aspergillus niger...  71.2    2e-11 
sp|I3XHK1|FANCM_ARATH DEAD-box ATP-dependent RNA helicase FANCM O...  70.5    3e-11 
sp|Q6BRF0|MPH1_DEBHA ATP-dependent DNA helicase MPH1 OS=Debaryomy...  68.9    1e-10 
sp|A1C9M6|DCL2_ASPCL Dicer-like protein 2 OS=Aspergillus clavatus...  68.2    2e-10 
sp|Q10HL3|DCL2A_ORYSJ Endoribonuclease Dicer homolog 2a OS=Oryza ...  68.2    2e-10 
sp|Q69LX2|DCL2B_ORYSJ Endoribonuclease Dicer homolog 2b OS=Oryza ...  68.2    2e-10 
sp|Q0UL22|DCL2_PHANO Dicer-like protein 2 OS=Phaeosphaeria nodoru...  67.0    5e-10 
sp|A3GH78|MPH1_PICST ATP-dependent DNA helicase MPH1 OS=Scheffers...  66.2    7e-10 
sp|Q75AA7|MPH1_EREGS ATP-dependent DNA helicase MPH1 OS=Eremothec...  65.9    1e-09 
sp|Q9VDA0|FANCM_DROME DEAD-box ATP-dependent DNA helicase Fancm O...  65.5    1e-09 
sp|Q9LXW7|DCL3_ARATH Endoribonuclease Dicer homolog 3 OS=Arabidop...  64.7    2e-09 
sp|Q6FPQ3|MPH1_CANGA ATP-dependent DNA helicase MPH1 OS=Candida g...  64.3    3e-09 
sp|Q9VCU9|DCR1_DROME Endoribonuclease Dcr-1 OS=Drosophila melanog...  63.5    6e-09 
sp|A0A1D5PRR9|FANCM_CHICK Fanconi anemia group M protein OS=Gallu...  63.2    8e-09 
sp|A2R345|DCL21_ASPNC Dicer-like protein 2-1 OS=Aspergillus niger...  62.0    1e-08 
sp|Q1DW80|DCL2_COCIM Dicer-like protein 2 OS=Coccidioides immitis...  62.0    2e-08 
sp|A1ZAW0|DCR2_DROME Endoribonuclease Dcr-2 OS=Drosophila melanog...  61.2    3e-08 
sp|A7TSV4|MPH1_VANPO ATP-dependent DNA helicase MPH1 OS=Vanderwal...  60.1    5e-08 
sp|A6ZVS0|MPH1_YEAS7 ATP-dependent DNA helicase MPH1 OS=Saccharom...  59.7    7e-08 
sp|P40562|MPH1_YEAST ATP-dependent DNA helicase MPH1 OS=Saccharom...  59.7    7e-08 
sp|Q8GY84|RH10_ARATH DEAD-box ATP-dependent RNA helicase 10 OS=Ar...  56.6    4e-07 
sp|Q6CB69|DED1_YARLI ATP-dependent RNA helicase DED1 OS=Yarrowia ...  56.6    6e-07 
sp|A3LS22|RRP3_PICST ATP-dependent rRNA helicase RRP3 OS=Scheffer...  55.8    8e-07 
sp|P96130|RECG_TREPA ATP-dependent DNA helicase RecG OS=Treponema...  55.8    1e-06 
sp|Q0CIQ3|RRP3_ASPTN ATP-dependent rRNA helicase rrp3 OS=Aspergil...  55.1    1e-06 
sp|A7TKR8|DED1_VANPO ATP-dependent RNA helicase DED1 OS=Vanderwal...  54.7    2e-06 
sp|Q55804|CRHR_SYNY3 RNA helicase CrhR OS=Synechocystis sp. (stra...  54.3    3e-06 
sp|Q4I7K4|DED1_GIBZE ATP-dependent RNA helicase DED1 OS=Gibberell...  54.3    3e-06 
sp|Q54TJ4|DDX27_DICDI Probable ATP-dependent RNA helicase ddx27 O...  53.9    4e-06 
sp|Q0UWA6|DED1_PHANO ATP-dependent RNA helicase DED1 OS=Phaeospha...  53.5    5e-06 
sp|Q6CQX2|MPH1_KLULA ATP-dependent DNA helicase MPH1 OS=Kluyverom...  53.5    5e-06 
sp|P0CR00|RRP3_CRYNJ ATP-dependent rRNA helicase RRP3 OS=Cryptoco...  53.1    6e-06 
sp|P0CR01|RRP3_CRYNB ATP-dependent rRNA helicase RRP3 OS=Cryptoco...  53.1    6e-06 
sp|P21507|SRMB_ECOLI ATP-dependent RNA helicase SrmB OS=Escherich...  53.1    6e-06 
sp|Q6BQ61|RRP3_DEBHA ATP-dependent rRNA helicase RRP3 OS=Debaryom...  52.8    7e-06 
sp|A6QRQ7|RRP3_AJECN ATP-dependent rRNA helicase RRP3 OS=Ajellomy...  52.8    8e-06 
sp|Q54VT4|DDX47_DICDI Probable ATP-dependent RNA helicase ddx47 O...  52.8    9e-06 
sp|A0A1D6LAB7|RH3B_MAIZE DEAD-box ATP-dependent RNA helicase 3B, ...  52.8    1e-05 
sp|Q1E1N5|RRP3_COCIM ATP-dependent rRNA helicase RRP3 OS=Coccidio...  52.4    1e-05 
sp|A5DQF1|RRP3_PICGU ATP-dependent rRNA helicase RRP3 OS=Meyerozy...  52.4    1e-05 
sp|A0A1D6GDY8|RH3A_MAIZE DEAD-box ATP-dependent RNA helicase 3A, ...  52.8    1e-05 
sp|Q6CH58|RRP3_YARLI ATP-dependent rRNA helicase RRP3 OS=Yarrowia...  52.4    1e-05 
sp|Q2HBE7|DED1_CHAGB ATP-dependent RNA helicase DED1 OS=Chaetomiu...  52.4    1e-05 
sp|A7EJY3|DED1_SCLS1 ATP-dependent RNA helicase ded1 OS=Sclerotin...  52.0    2e-05 
sp|Q5JKF2|RH40_ORYSJ DEAD-box ATP-dependent RNA helicase 40 OS=Or...  52.0    2e-05 
sp|Q0D8N0|RH53_ORYSJ DEAD-box ATP-dependent RNA helicase 53 OS=Or...  51.6    2e-05 
sp|A6SEH9|DED1_BOTFB ATP-dependent RNA helicase ded1 OS=Botryotin...  51.6    2e-05 
sp|Q9P6U9|DED1_NEUCR ATP-dependent RNA helicase ded1 OS=Neurospor...  51.6    2e-05 
sp|A4RHF1|DED1_PYRO7 ATP-dependent RNA helicase DED1 OS=Pyricular...  51.6    2e-05 
sp|Q4IFI0|RRP3_GIBZE ATP-dependent rRNA helicase RRP3 OS=Gibberel...  51.2    2e-05 
sp|Q0DB53|RH52A_ORYSJ DEAD-box ATP-dependent RNA helicase 52A OS=...  51.2    2e-05 
sp|A7EML8|RRP3_SCLS1 ATP-dependent rRNA helicase rrp3 OS=Scleroti...  51.2    3e-05 
sp|Q5ACU6|RRP3_CANAL ATP-dependent rRNA helicase RRP3 OS=Candida ...  51.2    3e-05 
sp|Q4P3U9|RRP3_USTMA ATP-dependent rRNA helicase RRP3 OS=Ustilago...  51.2    3e-05 
sp|P19109|DDX17_DROME ATP-dependent RNA helicase p62 OS=Drosophil...  51.2    3e-05 
sp|Q15N18|RHLB_PSEA6 ATP-dependent RNA helicase RhlB OS=Pseudoalt...  50.8    3e-05 
sp|Q1DJF0|DED1_COCIM ATP-dependent RNA helicase DED1 OS=Coccidioi...  50.8    3e-05 
sp|A6RW56|RRP3_BOTFB ATP-dependent rRNA helicase rrp3 OS=Botryoti...  50.8    3e-05 
sp|A1CXK7|DED1_NEOFI ATP-dependent RNA helicase ded1 OS=Neosartor...  50.8    3e-05 
sp|Q9LUW6|RH9_ARATH DEAD-box ATP-dependent RNA helicase 9, mitoch...  50.8    3e-05 
sp|A2RB17|RRP3_ASPNC ATP-dependent rRNA helicase rrp3 OS=Aspergil...  50.4    4e-05 
sp|Q9LUW5|RH53_ARATH DEAD-box ATP-dependent RNA helicase 53, mito...  50.4    4e-05 
sp|A8F0V9|UVRB_RICM5 UvrABC system protein B OS=Rickettsia massil...  50.4    5e-05 
sp|A8EXS6|UVRB_RICCK UvrABC system protein B OS=Rickettsia canade...  50.4    5e-05 
sp|A2QI25|DED1_ASPNC ATP-dependent RNA helicase ded1 OS=Aspergill...  50.4    5e-05 
sp|Q0CLJ6|DED1_ASPTN ATP-dependent RNA helicase ded1 OS=Aspergill...  50.4    5e-05 
sp|P23394|PRP28_YEAST Pre-mRNA-splicing ATP-dependent RNA helicas...  50.1    5e-05 
sp|Q2UGK3|DED1_ASPOR ATP-dependent RNA helicase ded1 OS=Aspergill...  50.1    6e-05 
sp|Q0DM51|RH3_ORYSJ DEAD-box ATP-dependent RNA helicase 3, chloro...  50.1    6e-05 
sp|Q9C551|RH5_ARATH DEAD-box ATP-dependent RNA helicase 5 OS=Arab...  49.7    7e-05 
sp|C8V8H4|DED1_EMENI ATP-dependent RNA helicase ded1 OS=Emericell...  50.1    7e-05 
sp|Q7L014|DDX46_HUMAN Probable ATP-dependent RNA helicase DDX46 O...  50.1    7e-05 
sp|Q5R6D8|DDX46_PONAB Probable ATP-dependent RNA helicase DDX46 O...  50.1    7e-05 
sp|Q569Z5|DDX46_MOUSE Probable ATP-dependent RNA helicase DDX46 O...  50.1    7e-05 
sp|Q970I2|XPB2_SULTO DNA 3'-5' translocase XPB2 OS=Sulfurisphaera...  49.7    7e-05 
sp|Q756G5|DBP8_EREGS ATP-dependent RNA helicase DBP8 OS=Eremothec...  49.3    7e-05 
sp|Q9P6N8|RRP3_SCHPO ATP-dependent rRNA helicase rrp3 OS=Schizosa...  49.7    7e-05 
sp|Q62780|DDX46_RAT Probable ATP-dependent RNA helicase DDX46 OS=...  50.1    7e-05 
sp|Q84W89|RH37_ARATH DEAD-box ATP-dependent RNA helicase 37 OS=Ar...  49.7    8e-05 
sp|A8GMJ1|UVRB_RICAH UvrABC system protein B OS=Rickettsia akari ...  49.7    9e-05 
sp|Q6FM43|PRP28_CANGA Pre-mRNA-splicing ATP-dependent RNA helicas...  49.3    1e-04 
sp|Q8DDN6|RHLB_VIBVU ATP-dependent RNA helicase RhlB OS=Vibrio vu...  48.9    1e-04 
sp|P44586|DEAD_HAEIN ATP-dependent RNA helicase DeaD OS=Haemophil...  49.3    1e-04 
sp|Q7MGP7|RHLB_VIBVY ATP-dependent RNA helicase RhlB OS=Vibrio vu...  48.9    1e-04 
sp|Q8L7S8|RH3_ARATH DEAD-box ATP-dependent RNA helicase 3, chloro...  49.3    1e-04 
sp|Q75HJ0|RH37_ORYSJ DEAD-box ATP-dependent RNA helicase 37 OS=Or...  48.9    1e-04 
sp|Q65RG7|RHLB_MANSM ATP-dependent RNA helicase RhlB OS=Mannheimi...  48.5    1e-04 
sp|A1CR32|RRP3_ASPCL ATP-dependent rRNA helicase rrp3 OS=Aspergil...  48.5    1e-04 
sp|Q4PHU9|DBP2_USTMA ATP-dependent RNA helicase DBP2 OS=Ustilago ...  48.5    2e-04 
sp|P06634|DED1_YEAST ATP-dependent RNA helicase DED1 OS=Saccharom...  48.5    2e-04 
sp|A6ZP47|DED1_YEAS7 ATP-dependent RNA helicase DED1 OS=Saccharom...  48.5    2e-04 
sp|Q6FNK8|RRP3_CANGA ATP-dependent rRNA helicase RRP3 OS=Candida ...  48.5    2e-04 
sp|A1D405|RRP3_NEOFI ATP-dependent rRNA helicase rrp3 OS=Neosarto...  48.1    2e-04 
sp|Q4WJE9|RRP3_ASPFU ATP-dependent rRNA helicase rrp3 OS=Aspergil...  48.1    2e-04 
sp|Q4WP13|DED1_ASPFU ATP-dependent RNA helicase ded1 OS=Aspergill...  48.1    2e-04 
sp|A5DQS0|DED1_PICGU ATP-dependent RNA helicase DED1 OS=Meyerozym...  48.1    2e-04 
sp|Q4UKL6|UVRB_RICFE UvrABC system protein B OS=Rickettsia felis ...  48.1    2e-04 
sp|Q9VHP0|DDX3_DROME ATP-dependent RNA helicase bel OS=Drosophila...  48.1    2e-04 
sp|A1CH78|DED1_ASPCL ATP-dependent RNA helicase ded1 OS=Aspergill...  48.1    2e-04 
sp|A3LP87|DBP8_PICST ATP-dependent RNA helicase DBP8 OS=Scheffers...  47.8    3e-04 
sp|O25029|RHPA_HELPY DEAD-box ATP-dependent RNA helicase RhpA OS=...  47.8    3e-04 
sp|Q7Y183|RH10_ORYSJ DEAD-box ATP-dependent RNA helicase 10 OS=Or...  47.8    3e-04 
sp|A2XKG2|RH10_ORYSI DEAD-box ATP-dependent RNA helicase 10 OS=Or...  47.8    3e-04 
sp|Q1RHI9|UVRB_RICBR UvrABC system protein B OS=Rickettsia bellii...  47.8    3e-04 
sp|A8GV86|UVRB_RICB8 UvrABC system protein B OS=Rickettsia bellii...  47.8    3e-04 
sp|Q6YS30|RH5_ORYSJ DEAD-box ATP-dependent RNA helicase 5 OS=Oryz...  47.8    3e-04 
sp|Q0UN57|PRP5_PHANO Pre-mRNA-processing ATP-dependent RNA helica...  48.1    3e-04 
sp|P44701|SRMB_HAEIN ATP-dependent RNA helicase SrmB OS=Haemophil...  47.4    3e-04 
sp|P57453|DEAD_BUCAI ATP-dependent RNA helicase DeaD OS=Buchnera ...  47.8    3e-04 
sp|B9XXL6|RHPA_HELP8 DEAD-box ATP-dependent RNA helicase RhpA OS=...  47.4    3e-04 
sp|C4K0Z4|UVRB_RICPU UvrABC system protein B OS=Rickettsia peacoc...  47.8    4e-04 
sp|C3PMP5|UVRB_RICAE UvrABC system protein B OS=Rickettsia africa...  47.8    4e-04 
sp|A8GR53|UVRB_RICRS UvrABC system protein B OS=Rickettsia ricket...  47.4    4e-04 
sp|B0BWK0|UVRB_RICRO UvrABC system protein B OS=Rickettsia ricket...  47.4    4e-04 
sp|Q92J03|UVRB_RICCN UvrABC system protein B OS=Rickettsia conori...  47.4    4e-04 
sp|A6ZSX1|RRP3_YEAS7 ATP-dependent rRNA helicase RRP3 OS=Saccharo...  47.4    4e-04 
sp|Q6BU54|DED1_DEBHA ATP-dependent RNA helicase DED1 OS=Debaryomy...  47.4    4e-04 
sp|Q1DHB2|PRP5_COCIM Pre-mRNA-processing ATP-dependent RNA helica...  47.8    4e-04 
sp|Q4L3G0|MFD_STAHJ Transcription-repair-coupling factor OS=Staph...  47.4    4e-04 
sp|Q4P733|DED1_USTMA ATP-dependent RNA helicase DED1 OS=Ustilago ...  47.4    4e-04 
sp|Q6Z4K6|RH52B_ORYSJ DEAD-box ATP-dependent RNA helicase 52B OS=...  47.4    5e-04 
sp|Q87KH5|RHLB_VIBPA ATP-dependent RNA helicase RhlB OS=Vibrio pa...  47.0    5e-04 
sp|Q0ILZ4|RH9_ORYSJ DEAD-box ATP-dependent RNA helicase 9 OS=Oryz...  47.0    5e-04 
sp|Q914K8|Y022_SIFVH Putative helicase 22 OS=Sulfolobus islandicu...  47.0    5e-04 
sp|Q54CE0|DDX17_DICDI Probable ATP-dependent RNA helicase ddx17 O...  47.4    5e-04 
sp|Q9DF35|DD21A_XENLA Nucleolar RNA helicase 2-A OS=Xenopus laevi...  47.0    5e-04 
sp|Q0UK12|RRP3_PHANO ATP-dependent rRNA helicase RRP3 OS=Phaeosph...  47.0    5e-04 
sp|Q6FP38|DBP1_CANGA ATP-dependent RNA helicase DBP1 OS=Candida g...  47.0    6e-04 
sp|Q2JN87|UVRB_SYNJB UvrABC system protein B OS=Synechococcus sp....  47.0    6e-04 
sp|P38712|RRP3_YEAST ATP-dependent rRNA helicase RRP3 OS=Saccharo...  46.6    6e-04 
sp|P33906|DEAD_KLEPN ATP-dependent RNA helicase DeaD OS=Klebsiell...  46.6    6e-04 
sp|Q8XA87|DEAD_ECO57 ATP-dependent RNA helicase DeaD OS=Escherich...  46.6    7e-04 
sp|P0A9P8|DEAD_SHIFL ATP-dependent RNA helicase DeaD OS=Shigella ...  46.6    7e-04 
sp|P0A9P6|DEAD_ECOLI ATP-dependent RNA helicase DeaD OS=Escherich...  46.6    7e-04 
sp|P0A9P7|DEAD_ECOL6 ATP-dependent RNA helicase DeaD OS=Escherich...  46.6    7e-04 
sp|Q7RY59|RRP3_NEUCR ATP-dependent rRNA helicase rrp-3 OS=Neurosp...  46.6    7e-04 
sp|A5E0U9|DBP8_LODEL ATP-dependent RNA helicase DBP8 OS=Lodderomy...  46.2    7e-04 
sp|Q6CLR3|DED1_KLULA ATP-dependent RNA helicase DED1 OS=Kluyverom...  46.6    8e-04 
sp|Q9VIF6|DDX47_DROME ATP-dependent RNA helicase DDX47 OS=Drosoph...  46.2    8e-04 
sp|Q96GQ7|DDX27_HUMAN Probable ATP-dependent RNA helicase DDX27 O...  46.6    8e-04 
sp|A6R3L3|DED1_AJECN ATP-dependent RNA helicase DED1 OS=Ajellomyc...  46.6    8e-04 
sp|A4STJ7|RHLB_AERS4 ATP-dependent RNA helicase RhlB OS=Aeromonas...  46.2    8e-04 
sp|Q1DZK8|DBP3_COCIM ATP-dependent RNA helicase DBP3 OS=Coccidioi...  46.2    8e-04 
sp|O13370|DED1_SCHPO ATP-dependent RNA helicase ded1 OS=Schizosac...  46.6    8e-04 
sp|Q4A127|HSDR_STAS1 Type I restriction enzyme SsaAORF53P endonuc...  46.6    8e-04 
sp|Q89AF9|DEAD_BUCBP ATP-dependent RNA helicase DeaD OS=Buchnera ...  46.2    8e-04 
sp|Q4E162|IF4A_TRYCC Probable eukaryotic initiation factor 4A OS=...  45.8    9e-04 
sp|Q2UNB7|RRP3_ASPOR ATP-dependent rRNA helicase rrp3 OS=Aspergil...  46.2    9e-04 
sp|Q6CXW0|DBP8_KLULA ATP-dependent RNA helicase DBP8 OS=Kluyverom...  45.8    0.001 
sp|Q75EW9|RRP3_EREGS ATP-dependent rRNA helicase RRP3 OS=Eremothe...  45.8    0.001 
sp|A1A4H6|DDX27_BOVIN Probable ATP-dependent RNA helicase DDX27 O...  46.2    0.001 
sp|Q07736|T1RA_ECOLX Type I restriction enzyme EcoAI endonuclease...  46.2    0.001 
sp|Q59PR3|DBP8_CANAL ATP-dependent RNA helicase DBP8 OS=Candida a...  45.8    0.001 
sp|Q5A4E2|DED1_CANAL ATP-dependent RNA helicase DED1 OS=Candida a...  45.8    0.001 
sp|C4K8M8|RHLB_HAMD5 ATP-dependent RNA helicase RhlB OS=Hamiltone...  45.4    0.001 
sp|Q9ZDW2|UVRB_RICPR UvrABC system protein B OS=Rickettsia prowaz...  45.8    0.001 
sp|P09052|VASA1_DROME ATP-dependent RNA helicase vasa OS=Drosophi...  45.8    0.001 
sp|B7VME9|RHLB_VIBA3 ATP-dependent RNA helicase RhlB OS=Vibrio at...  45.4    0.001 
sp|Q9H0S4|DDX47_HUMAN Probable ATP-dependent RNA helicase DDX47 O...  45.4    0.001 
sp|Q8LA13|RH11_ARATH DEAD-box ATP-dependent RNA helicase 11 OS=Ar...  45.8    0.001 
sp|Q5VQL1|RH14_ORYSJ DEAD-box ATP-dependent RNA helicase 14 OS=Or...  45.8    0.001 
sp|B5FF87|RHLB_ALIFM ATP-dependent RNA helicase RhlB OS=Aliivibri...  45.4    0.001 
sp|Q6CT85|RRP3_KLULA ATP-dependent rRNA helicase RRP3 OS=Kluyvero...  45.4    0.001 
sp|Q5HJH8|HSDR_STAAC Type I restriction enzyme SauCOLORF180P endo...  45.8    0.001 
sp|Q2R1M8|RH52C_ORYSJ DEAD-box ATP-dependent RNA helicase 52C OS=...  45.8    0.001 
sp|Q5E8U5|RHLB_ALIF1 ATP-dependent RNA helicase RhlB OS=Aliivibri...  45.4    0.001 
sp|Q9CWX9|DDX47_MOUSE Probable ATP-dependent RNA helicase DDX47 O...  45.4    0.001 
sp|A4RK80|PRP28_PYRO7 Pre-mRNA-splicing ATP-dependent RNA helicas...  45.4    0.001 
sp|Q6CCZ1|PRP5_YARLI Pre-mRNA-processing ATP-dependent RNA helica...  45.8    0.001 
sp|D0PV95|DDX3_CAEEL ATP-dependent RNA helicase laf-1 OS=Caenorha...  45.4    0.002 
sp|Q09903|DRS1_SCHPO ATP-dependent RNA helicase drs1 OS=Schizosac...  45.4    0.002 
sp|Q29S22|DDX47_BOVIN Probable ATP-dependent RNA helicase DDX47 O...  45.4    0.002 
sp|A7MXT4|RHLB_VIBC1 ATP-dependent RNA helicase RhlB OS=Vibrio ca...  45.1    0.002 
sp|C4LB49|RHLB_TOLAT ATP-dependent RNA helicase RhlB OS=Tolumonas...  45.1    0.002 
sp|Q2JRR3|UVRB_SYNJA UvrABC system protein B OS=Synechococcus sp....  45.4    0.002 
sp|P0CQ79|DBP3_CRYNB ATP-dependent RNA helicase DBP3 OS=Cryptococ...  45.4    0.002 
sp|Q81IT9|CSHA_BACCR DEAD-box ATP-dependent RNA helicase CshA OS=...  45.4    0.002 
sp|Q2H1Q8|RRP3_CHAGB ATP-dependent rRNA helicase RRP3 OS=Chaetomi...  45.1    0.002 
sp|Q6BPT8|DBP6_DEBHA ATP-dependent RNA helicase DBP6 OS=Debaryomy...  45.4    0.002 
sp|Q9DF36|DD21B_XENLA Nucleolar RNA helicase 2-B OS=Xenopus laevi...  45.4    0.002 
sp|A0KEG9|RHLB_AERHH ATP-dependent RNA helicase RhlB OS=Aeromonas...  45.1    0.002 
sp|Q4TVV3|DDX46_DANRE Probable ATP-dependent RNA helicase DDX46 O...  45.4    0.002 
sp|A7TS37|RRP3_VANPO ATP-dependent rRNA helicase RRP3 OS=Vanderwa...  45.1    0.002 
sp|P34580|DDX47_CAEEL Putative ATP-dependent RNA helicase T26G10....  45.1    0.002 
sp|Q7SBC6|DBP2_NEUCR ATP-dependent RNA helicase dbp2 OS=Neurospor...  45.1    0.002 
sp|Q6HPE6|CSHA_BACHK DEAD-box ATP-dependent RNA helicase CshA OS=...  45.1    0.002 
sp|Q81VG0|CSHA_BACAN DEAD-box ATP-dependent RNA helicase CshA OS=...  45.1    0.002 
sp|A0R8U6|CSHA_BACAH DEAD-box ATP-dependent RNA helicase CshA OS=...  45.1    0.002 
sp|P0CQ78|DBP3_CRYNJ ATP-dependent RNA helicase DBP3 OS=Cryptococ...  45.1    0.002 
sp|Q68XG5|UVRB_RICTY UvrABC system protein B OS=Rickettsia typhi ...  45.1    0.002 
sp|A3LQ01|DED1_PICST ATP-dependent RNA helicase DED1 OS=Scheffers...  45.1    0.002 
sp|P24783|DBP2_YEAST ATP-dependent RNA helicase DBP2 OS=Saccharom...  45.1    0.002 
sp|Q75B50|DED1_EREGS ATP-dependent RNA helicase DED1 OS=Eremothec...  45.1    0.002 
sp|A6ZRX0|DBP2_YEAS7 ATP-dependent RNA helicase DBP2 OS=Saccharom...  45.1    0.002 
sp|Q59W52|PRP28_CANAL Pre-mRNA-splicing ATP-dependent RNA helicas...  45.1    0.002 
sp|Q63GX5|CSHA_BACCZ DEAD-box ATP-dependent RNA helicase CshA OS=...  44.7    0.002 
sp|Q465R3|HELS_METBF ATP-dependent DNA helicase Hel308 OS=Methano...  45.1    0.002 
sp|Q0I1X0|RHLB_HISS1 ATP-dependent RNA helicase RhlB OS=Histophil...  44.7    0.002 
sp|Q8CMT1|MFD_STAES Transcription-repair-coupling factor OS=Staph...  45.1    0.002 
sp|P16381|DDX3L_MOUSE Putative ATP-dependent RNA helicase Pl10 OS...  44.7    0.003 
sp|Q7SEL0|PRP28_NEUCR Pre-mRNA-splicing ATP-dependent RNA helicas...  44.7    0.003 
sp|Q6FLF3|DBP2_CANGA ATP-dependent RNA helicase DBP2 OS=Candida g...  44.7    0.003 
sp|B0UUZ9|RHLB_HISS2 ATP-dependent RNA helicase RhlB OS=Histophil...  44.3    0.003 
sp|Q5AWA6|DBP3_EMENI ATP-dependent RNA helicase dbp3 OS=Emericell...  44.3    0.003 
sp|Q9P7C7|PRP11_SCHPO Pre-mRNA-processing ATP-dependent RNA helic...  44.7    0.003 
sp|Q6DRI7|DDX51_DANRE ATP-dependent RNA helicase DDX51 OS=Danio r...  44.7    0.003 
sp|Q4PFD9|PRP5_USTMA Pre-mRNA-processing ATP-dependent RNA helica...  44.7    0.003 
sp|C3LQR1|RHLB_VIBCM ATP-dependent RNA helicase RhlB OS=Vibrio ch...  44.3    0.003 
sp|Q9KV52|RHLB_VIBCH ATP-dependent RNA helicase RhlB OS=Vibrio ch...  44.3    0.003 
sp|A5F3R4|RHLB_VIBC3 ATP-dependent RNA helicase RhlB OS=Vibrio ch...  44.3    0.003 
sp|Q4X195|DBP2_ASPFU ATP-dependent RNA helicase dbp2 OS=Aspergill...  44.3    0.003 
sp|Q7V9M1|UVRB_PROMA UvrABC system protein B OS=Prochlorococcus m...  44.7    0.003 
sp|A6VKC3|RHLB_ACTSZ ATP-dependent RNA helicase RhlB OS=Actinobac...  44.3    0.003 
sp|A5DZE6|DED1_LODEL ATP-dependent RNA helicase DED1 OS=Lodderomy...  44.3    0.003 
sp|Q7A801|HSDR_STAAN Type I restriction enzyme SauN315I endonucle...  44.7    0.003 
sp|Q99X26|HSDR_STAAM Type I restriction enzyme SauMu50ORF195P end...  44.7    0.003 
sp|A5UNK6|UVRB_METS3 UvrABC system protein B OS=Methanobrevibacte...  44.3    0.004 
sp|Q5QMN3|RH20_ORYSJ DEAD-box ATP-dependent RNA helicase 20 OS=Or...  44.3    0.004 
sp|A4RGD1|RRP3_PYRO7 ATP-dependent rRNA helicase RRP3 OS=Pyricula...  44.3    0.004 
sp|Q6C4D4|DBP2_YARLI ATP-dependent RNA helicase DBP2 OS=Yarrowia ...  44.3    0.004 
sp|Q5HIH2|MFD_STAAC Transcription-repair-coupling factor OS=Staph...  44.3    0.004 
sp|Q8NXZ6|MFD_STAAW Transcription-repair-coupling factor OS=Staph...  44.3    0.004 
sp|Q6GBY5|MFD_STAAS Transcription-repair-coupling factor OS=Staph...  44.3    0.004 
sp|Q2G0R8|MFD_STAA8 Transcription-repair-coupling factor OS=Staph...  44.3    0.004 
sp|Q2FJD8|MFD_STAA3 Transcription-repair-coupling factor OS=Staph...  44.3    0.004 
sp|Q6GJG8|MFD_STAAR Transcription-repair-coupling factor OS=Staph...  44.3    0.004 
sp|Q7A7B2|MFD_STAAN Transcription-repair-coupling factor OS=Staph...  44.3    0.004 
sp|Q99WA0|MFD_STAAM Transcription-repair-coupling factor OS=Staph...  44.3    0.004 
sp|Q8NYL9|HSDR_STAAW Type I restriction enzyme SauMW2ORF169P endo...  44.3    0.004 
sp|Q6GCT1|HSDR_STAAS Type I restriction enzyme SauMSSORF170P endo...  44.3    0.004 
sp|Q2YVY2|MFD_STAAB Transcription-repair-coupling factor OS=Staph...  44.3    0.004 
sp|Q6GKB1|HSDR_STAAR Type I restriction enzyme SauMRSORF196P endo...  44.3    0.004 
sp|Q8Y8N0|CSHA_LISMO ATP-dependent RNA helicase CshA OS=Listeria ...  43.9    0.004 
sp|P21693|DBPA_ECOLI ATP-dependent RNA helicase DbpA OS=Escherich...  43.9    0.004 
sp|Q8K9H6|DEAD_BUCAP ATP-dependent RNA helicase DeaD OS=Buchnera ...  43.9    0.004 
sp|Q6FQZ0|DBP8_CANGA ATP-dependent RNA helicase DBP8 OS=Candida g...  43.9    0.004 
sp|Q6BGU8|DBP8_DEBHA ATP-dependent RNA helicase DBP8 OS=Debaryomy...  43.9    0.004 
sp|Q73EU1|CSHA_BACC1 DEAD-box ATP-dependent RNA helicase CshA OS=...  43.9    0.005 
sp|C5CFR8|UVRB_KOSOT UvrABC system protein B OS=Kosmotoga olearia...  43.9    0.005 
sp|Q4P184|FAL1_USTMA ATP-dependent RNA helicase FAL1 OS=Ustilago ...  43.5    0.005 
sp|Q4PEX7|DBP8_USTMA ATP-dependent RNA helicase DBP8 OS=Ustilago ...  43.9    0.005 
sp|O62591|IF4A_LEIMA Probable eukaryotic initiation factor 4A OS=...  43.5    0.005 
sp|A4HRK0|IF4A_LEIIN Probable eukaryotic initiation factor 4A OS=...  43.5    0.005 
sp|A7TK63|DBP8_VANPO ATP-dependent RNA helicase DBP8 OS=Vanderwal...  43.5    0.005 
sp|P0DMI1|HELS_ARCFU ATP-dependent DNA helicase Hel308 OS=Archaeo...  43.9    0.005 
sp|Q25225|IF4A_LEIBR Probable eukaryotic initiation factor 4A OS=...  43.5    0.005 
sp|P0CQ74|DED1_CRYNJ ATP-dependent RNA helicase ded1 OS=Cryptococ...  43.9    0.005 
sp|P0CQ75|DED1_CRYNB ATP-dependent RNA helicase ded1 OS=Cryptococ...  43.9    0.005 
sp|Q47281|T1RE_ECOLX Type I restriction enzyme EcoEI endonuclease...  43.9    0.005 
sp|Q9Z6C9|CSHA_LIMRT ATP-dependent RNA helicase CshA OS=Limosilac...  43.5    0.005 
sp|Q9M2F9|RH52_ARATH DEAD-box ATP-dependent RNA helicase 52 OS=Ar...  43.9    0.005 
sp|Q2H720|DBP2_CHAGB ATP-dependent RNA helicase DBP2 OS=Chaetomiu...  43.9    0.005 
sp|Q5HGK6|RECG_STAAC ATP-dependent DNA helicase RecG OS=Staphyloc...  43.9    0.005 
sp|O50581|RECG_STAA8 ATP-dependent DNA helicase RecG OS=Staphyloc...  43.9    0.005 
sp|Q6CIV2|DBP2_KLULA ATP-dependent RNA helicase DBP2 OS=Kluyverom...  43.9    0.005 
sp|P42305|DBPA_BACSU ATP-dependent RNA helicase DbpA OS=Bacillus ...  43.5    0.005 
sp|Q9ZB21|UVRB_MYCPL UvrABC system protein B OS=Mycoplasmopsis pu...  43.9    0.005 
sp|B3PLX9|UVRB_META1 UvrABC system protein B OS=Metamycoplasma ar...  43.9    0.005 
sp|Q6BTL5|DRS1_DEBHA ATP-dependent RNA helicase DRS1 OS=Debaryomy...  43.9    0.005 
sp|Q5RF43|DDX3Y_PONAB ATP-dependent RNA helicase DDX3Y OS=Pongo a...  43.9    0.005 
sp|Q12WZ6|HELS_METBU ATP-dependent DNA helicase Hel308 OS=Methano...  43.9    0.006 
sp|O00571|DDX3X_HUMAN ATP-dependent RNA helicase DDX3X OS=Homo sa...  43.9    0.006 
sp|Q62167|DDX3X_MOUSE ATP-dependent RNA helicase DDX3X OS=Mus mus...  43.5    0.006 
sp|Q8PZR7|HELS_METMA ATP-dependent DNA helicase Hel308 OS=Methano...  43.9    0.006 
sp|O15523|DDX3Y_HUMAN ATP-dependent RNA helicase DDX3Y OS=Homo sa...  43.5    0.006 
sp|Q5HRQ2|MFD_STAEQ Transcription-repair-coupling factor OS=Staph...  43.9    0.006 
sp|Q8TL39|HELS_METAC ATP-dependent DNA helicase Hel308 OS=Methano...  43.5    0.006 
sp|Q9K6X9|UVRB_HALH5 UvrABC system protein B OS=Halalkalibacteriu...  43.5    0.006 
sp|Q8Y7M8|DBPA_LISMO ATP-dependent RNA helicase DbpA OS=Listeria ...  43.5    0.006 
sp|P54509|YQHH_BACSU Uncharacterized ATP-dependent helicase YqhH ...  43.5    0.006 
sp|Q8TFK8|DED1_CANGA ATP-dependent RNA helicase DED1 OS=Candida g...  43.5    0.007 
sp|Q6GVM6|DDX3Y_PANTR ATP-dependent RNA helicase DDX3Y OS=Pan tro...  43.5    0.007 
sp|A5DF03|PRP28_PICGU Pre-mRNA-splicing ATP-dependent RNA helicas...  43.5    0.007 
sp|P0A4D8|CSHA_STRR6 DEAD-box ATP-dependent RNA helicase CshA OS=...  43.1    0.007 
sp|P0A4D7|CSHA_STRPN DEAD-box ATP-dependent RNA helicase CshA OS=...  43.1    0.007 
sp|Q7SH33|PRP5_NEUCR Pre-mRNA-processing ATP-dependent RNA helica...  43.5    0.007 
sp|Q58969|Y1574_METJA Uncharacterized ATP-dependent helicase MJ15...  43.5    0.007 
sp|P58174|UVRB_MYCPU UvrABC system protein B OS=Mycoplasmopsis pu...  43.1    0.008 
sp|A6RJA2|PRP28_BOTFB Pre-mRNA-splicing ATP-dependent RNA helicas...  43.5    0.008 
sp|A7IB61|HELS_METB6 ATP-dependent DNA helicase Hel308 OS=Methano...  43.1    0.008 
sp|Q55BR9|DDX49_DICDI Probable ATP-dependent RNA helicase ddx49 O...  43.1    0.008 
sp|B9KH59|UVRB_ANAMF UvrABC system protein B OS=Anaplasma margina...  43.1    0.008 
sp|Q5U526|I4A3A_XENLA Eukaryotic initiation factor 4A-III-A OS=Xe...  42.7    0.008 
sp|Q5P9H3|UVRB_ANAMM UvrABC system protein B OS=Anaplasma margina...  43.1    0.008 
sp|C6DHF5|RHLB_PECCP ATP-dependent RNA helicase RhlB OS=Pectobact...  42.7    0.008 
sp|Q5ZM36|IF4A3_CHICK Eukaryotic initiation factor 4A-III OS=Gall...  42.7    0.009 
sp|B7ZTW1|IF4A3_XENTR Eukaryotic initiation factor 4A-III OS=Xeno...  42.7    0.009 
sp|A1DGZ7|DBP2_NEOFI ATP-dependent RNA helicase dbp2 OS=Neosartor...  43.1    0.009 
sp|Q8N8A6|DDX51_HUMAN ATP-dependent RNA helicase DDX51 OS=Homo sa...  43.1    0.009 
sp|Q9C718|RH20_ARATH DEAD-box ATP-dependent RNA helicase 20 OS=Ar...  43.1    0.009 
sp|B5FZY7|IF4A3_TAEGU Eukaryotic initiation factor 4A-III OS=Taen...  42.7    0.009 
sp|B5DG42|IF4A3_SALSA Eukaryotic initiation factor 4A-III OS=Salm...  42.7    0.009 
sp|O42226|I4A3B_XENLA Eukaryotic initiation factor 4A-III-B OS=Xe...  42.7    0.009 
sp|Q91VC3|IF4A3_MOUSE Eukaryotic initiation factor 4A-III OS=Mus ...  42.7    0.009 
sp|Q6C024|PRP28_YARLI Pre-mRNA-splicing ATP-dependent RNA helicas...  43.1    0.009 
sp|Q2GID5|UVRB_ANAPZ UvrABC system protein B OS=Anaplasma phagocy...  43.1    0.009 
sp|Q54IV3|DDX42_DICDI Probable ATP-dependent RNA helicase ddx42 O...  43.1    0.009 
sp|Q3B8Q2|IF4A3_RAT Eukaryotic initiation factor 4A-III OS=Rattus...  42.7    0.009 
sp|A6M931|IF4A3_PIG Eukaryotic initiation factor 4A-III OS=Sus sc...  42.7    0.009 
sp|Q2NL22|IF4A3_BOVIN Eukaryotic initiation factor 4A-III OS=Bos ...  42.7    0.009 
sp|Q4R3Q1|IF4A3_MACFA Eukaryotic initiation factor 4A-III OS=Maca...  42.7    0.010 
sp|P38919|IF4A3_HUMAN Eukaryotic initiation factor 4A-III OS=Homo...  42.7    0.010 
sp|A1CQA9|PRP5_ASPCL Pre-mRNA-processing ATP-dependent RNA helica...  43.1    0.010 
sp|Q755A5|DBP3_EREGS ATP-dependent RNA helicase DBP3 OS=Eremothec...  42.7    0.010 
sp|Q8H136|RH14_ARATH DEAD-box ATP-dependent RNA helicase 14 OS=Ar...  42.7    0.010 
sp|Q0DLB9|RH17_ORYSJ DEAD-box ATP-dependent RNA helicase 17 OS=Or...  42.7    0.011 
sp|O22907|RH24_ARATH DEAD-box ATP-dependent RNA helicase 24 OS=Ar...  42.7    0.011 
sp|Q553B1|DDX46_DICDI ATP-dependent RNA helicase ddx46 OS=Dictyos...  42.7    0.011 
sp|Q6C9P3|DBP3_YARLI ATP-dependent RNA helicase DBP3 OS=Yarrowia ...  42.4    0.012 
sp|A5DDF4|PRP5_PICGU Pre-mRNA-processing ATP-dependent RNA helica...  42.7    0.013 
sp|Q59LU0|DBP2_CANAL ATP-dependent RNA helicase DBP2 OS=Candida a...  42.4    0.013 
sp|Q814I2|DBPA_BACCR ATP-dependent RNA helicase DbpA OS=Bacillus ...  42.4    0.013 
sp|Q0U6X2|MAK5_PHANO ATP-dependent RNA helicase MAK5 OS=Phaeospha...  42.7    0.013 
sp|Q1DMX8|PRP28_COCIM Pre-mRNA-splicing ATP-dependent RNA helicas...  42.7    0.013 
sp|G0SFM2|DBP2_CHATD ATP-dependent RNA helicase DBP2 OS=Chaetomiu...  42.4    0.013 
sp|A3LQ55|PRP5_PICST Pre-mRNA-processing ATP-dependent RNA helica...  42.7    0.013 
sp|Q2HAD8|PRP5_CHAGB Pre-mRNA-processing ATP-dependent RNA helica...  42.7    0.013 
sp|P9WH05|DEAD_MYCTU ATP-dependent RNA helicase DeaD OS=Mycobacte...  42.4    0.014 
sp|P9WH04|DEAD_MYCTO ATP-dependent RNA helicase DeaD OS=Mycobacte...  42.4    0.014 
sp|A7EGG4|PRP28_SCLS1 Pre-mRNA-splicing ATP-dependent RNA helicas...  42.4    0.014 
sp|Q6CJU1|DBP5_KLULA ATP-dependent RNA helicase DBP5 OS=Kluyverom...  42.4    0.014 
sp|P34689|GLH1_CAEEL ATP-dependent RNA helicase glh-1 OS=Caenorha...  42.4    0.014 
sp|Q84UQ1|RH42_ORYSJ DEAD-box ATP-dependent RNA helicase 42 OS=Or...  42.7    0.014 
sp|Q09719|DBP10_SCHPO ATP-dependent RNA helicase dbp10 OS=Schizos...  42.4    0.014 
sp|O94761|RECQ4_HUMAN ATP-dependent DNA helicase Q4 OS=Homo sapie...  42.7    0.015 
sp|Q5B3H7|DBP8_EMENI ATP-dependent RNA helicase dbp8 OS=Emericell...  42.4    0.015 
sp|Q6H874|RH47A_ORYSJ DEAD-box ATP-dependent RNA helicase 47A OS=...  42.4    0.015 
sp|Q2YUH3|CSHA_STAAB DEAD-box ATP-dependent RNA helicase CshA OS=...  42.4    0.015 
sp|P24346|DDX3_XENLA Putative ATP-dependent RNA helicase an3 OS=X...  42.4    0.015 
sp|P37474|MFD_BACSU Transcription-repair-coupling factor OS=Bacil...  42.4    0.015 
sp|Q755N4|DBP2_EREGS ATP-dependent RNA helicase DBP2 OS=Eremothec...  42.4    0.015 
sp|Q9ZRZ8|RH28_ARATH DEAD-box ATP-dependent RNA helicase 28 OS=Ar...  42.4    0.015 
sp|Q6CZD9|RHLB_PECAS ATP-dependent RNA helicase RhlB OS=Pectobact...  42.0    0.016 
sp|Q5HPW4|RECG_STAEQ ATP-dependent DNA helicase RecG OS=Staphyloc...  42.4    0.016 
sp|Q0V1Z7|DRS1_PHANO ATP-dependent RNA helicase DRS1 OS=Phaeospha...  42.4    0.016 
sp|A4R8G3|DBP8_PYRO7 ATP-dependent RNA helicase DBP8 OS=Pyricular...  42.4    0.016 
sp|Q5B5E7|RRP3_EMENI ATP-dependent rRNA helicase rrp3 OS=Emericel...  42.0    0.016 
sp|A3LSN3|DRS1_PICST ATP-dependent RNA helicase DRS1 OS=Scheffers...  42.4    0.016 
sp|Q6GEZ3|CSHA_STAAR DEAD-box ATP-dependent RNA helicase CshA OS=...  42.0    0.017 
sp|A4RN46|PRP5_PYRO7 Pre-mRNA-processing ATP-dependent RNA helica...  42.4    0.017 
sp|Q7A0D2|CSHA_STAAW DEAD-box ATP-dependent RNA helicase CshA OS=...  42.0    0.017 
sp|Q6G7M9|CSHA_STAAS DEAD-box ATP-dependent RNA helicase CshA OS=...  42.0    0.017 
sp|Q7A4G0|CSHA_STAAN DEAD-box ATP-dependent RNA helicase CshA OS=...  42.0    0.017 
sp|Q99SH6|CSHA_STAAM DEAD-box ATP-dependent RNA helicase CshA OS=...  42.0    0.017 
sp|Q5HEB9|CSHA_STAAC DEAD-box ATP-dependent RNA helicase CshA OS=...  42.0    0.017 
sp|Q2FWH5|CSHA_STAA8 DEAD-box ATP-dependent RNA helicase CshA OS=...  42.0    0.017 
sp|Q2FF45|CSHA_STAA3 DEAD-box ATP-dependent RNA helicase CshA OS=...  42.0    0.017 
sp|Q9QY16|DDX25_RAT ATP-dependent RNA helicase DDX25 OS=Rattus no...  42.0    0.017 
sp|Q2U2J6|PRP5_ASPOR Pre-mRNA-processing ATP-dependent RNA helica...  42.4    0.017 
sp|Q10PV9|RH47B_ORYSJ DEAD-box ATP-dependent RNA helicase 47B OS=...  42.0    0.018 
sp|Q98I01|UVRB_RHILO UvrABC system protein B OS=Mesorhizobium jap...  42.4    0.018 
sp|Q4WEB4|FAL1_ASPFU ATP-dependent RNA helicase fal1 OS=Aspergill...  42.0    0.018 
sp|Q9QY15|DDX25_MOUSE ATP-dependent RNA helicase DDX25 OS=Mus mus...  42.0    0.018 
sp|O51568|MFD_BORBU Transcription-repair-coupling factor OS=Borre...  42.4    0.018 
sp|Q38F76|IF4A_TRYB2 Probable eukaryotic initiation factor 4A OS=...  41.6    0.018 
sp|A1C595|FAL1_ASPCL ATP-dependent RNA helicase fal1 OS=Aspergill...  41.6    0.018 
sp|Q6C799|DBP8_YARLI ATP-dependent RNA helicase DBP8 OS=Yarrowia ...  42.0    0.019 
sp|Q6P9R1|DDX51_MOUSE ATP-dependent RNA helicase DDX51 OS=Mus mus...  42.0    0.019 
sp|Q5AUL4|FAL1_EMENI ATP-dependent RNA helicase fal1 OS=Emericell...  41.6    0.019 
sp|Q4IAA0|FAL1_GIBZE ATP-dependent RNA helicase FAL1 OS=Gibberell...  41.6    0.019 
sp|Q0CAS8|FAL1_ASPTN ATP-dependent RNA helicase fal1 OS=Aspergill...  41.6    0.019 
sp|Q8NX11|RECG_STAAW ATP-dependent DNA helicase RecG OS=Staphyloc...  42.0    0.019 
sp|Q6G9Y6|RECG_STAAS ATP-dependent DNA helicase RecG OS=Staphyloc...  42.0    0.019 
sp|P64325|RECG_STAAN ATP-dependent DNA helicase RecG OS=Staphyloc...  42.0    0.019 
sp|P64324|RECG_STAAM ATP-dependent DNA helicase RecG OS=Staphyloc...  42.0    0.019 
sp|Q2UAK1|FAL1_ASPOR ATP-dependent RNA helicase fal1 OS=Aspergill...  41.6    0.019 
sp|A5AAE5|FAL1_ASPNC ATP-dependent RNA helicase fal1 OS=Aspergill...  41.6    0.019 
sp|Q6GHK8|RECG_STAAR ATP-dependent DNA helicase RecG OS=Staphyloc...  42.0    0.019 
sp|A1C6C4|DBP2_ASPCL ATP-dependent RNA helicase dbp2 OS=Aspergill...  42.0    0.019 
sp|A1D071|FAL1_NEOFI ATP-dependent RNA helicase fal1 OS=Neosartor...  41.6    0.020 
sp|Q8SR63|RRP3_ENCCU ATP-dependent rRNA helicase RRP3 OS=Encephal...  41.6    0.020 
sp|Q99MJ9|DDX50_MOUSE ATP-dependent RNA helicase DDX50 OS=Mus mus...  42.0    0.021 
sp|P0C2N8|DRS1_NEUCR ATP-dependent RNA helicase drs1 OS=Neurospor...  42.0    0.021 
sp|P0CQ88|PRP28_CRYNJ Pre-mRNA-splicing ATP-dependent RNA helicas...  42.0    0.022 
sp|P0CQ89|PRP28_CRYNB Pre-mRNA-splicing ATP-dependent RNA helicas...  42.0    0.022 
sp|Q8YXS9|UVRB_NOSS1 UvrABC system protein B OS=Nostoc sp. (strai...  42.0    0.022 
sp|P54475|CSHB_BACSU DEAD-box ATP-dependent RNA helicase CshB OS=...  41.6    0.022 
sp|Q0INC5|RH28_ORYSJ DEAD-box ATP-dependent RNA helicase 28 OS=Or...  42.0    0.022 
sp|Q56998|UVRB_ZYMMO UvrABC system protein B OS=Zymomonas mobilis...  41.6    0.023 
sp|Q2TBP1|DDX25_BOVIN ATP-dependent RNA helicase DDX25 OS=Bos tau...  41.6    0.023 
sp|Q9LYJ9|RH46_ARATH DEAD-box ATP-dependent RNA helicase 46 OS=Ar...  41.6    0.023 
sp|Q966L9|GLH2_CAEEL ATP-dependent RNA helicase glh-2 OS=Caenorha...  42.0    0.023 
sp|Q2NQB2|RHLB_SODGM ATP-dependent RNA helicase RhlB OS=Sodalis g...  41.6    0.024 
sp|A8GZJ0|RHLB_SHEPA ATP-dependent RNA helicase RhlB OS=Shewanell...  41.6    0.024 
sp|Q55750|MFD_SYNY3 Transcription-repair-coupling factor OS=Synec...  42.0    0.024 
sp|Q6CT49|PRP28_KLULA Pre-mRNA-splicing ATP-dependent RNA helicas...  41.6    0.024 
sp|Q0UY62|DBP3_PHANO ATP-dependent RNA helicase DBP3 OS=Phaeospha...  41.6    0.024 
sp|P46942|DB10_NICSY ATP-dependent RNA helicase-like protein DB10...  41.6    0.025 
sp|Q7ZY47|DDX42_XENLA ATP-dependent RNA helicase DDX42 OS=Xenopus...  41.6    0.025 
sp|Q9BQ39|DDX50_HUMAN ATP-dependent RNA helicase DDX50 OS=Homo sa...  41.6    0.025 
sp|P24784|DBP1_YEAST ATP-dependent RNA helicase DBP1 OS=Saccharom...  41.6    0.025 
sp|P0CQ90|MAK5_CRYNJ ATP-dependent RNA helicase MAK5 OS=Cryptococ...  41.6    0.025 
sp|B0TJ29|RHLB_SHEHH ATP-dependent RNA helicase RhlB OS=Shewanell...  41.2    0.025 
sp|F4JFJ3|Y3206_ARATH ATP-dependent DNA helicase At3g02060, chlor...  41.6    0.025 
sp|P0CQ91|MAK5_CRYNB ATP-dependent RNA helicase MAK5 OS=Cryptococ...  41.6    0.026 
sp|A6ZWD3|DBP1_YEAS7 ATP-dependent RNA helicase DBP1 OS=Saccharom...  41.6    0.026 
sp|Q5QYF8|RHLB_IDILO ATP-dependent RNA helicase RhlB OS=Idiomarin...  41.2    0.027 
sp|A4QYM6|DRS1_PYRO7 ATP-dependent RNA helicase DRS1 OS=Pyricular...  41.6    0.027 
sp|A2QC74|DBP2_ASPNC ATP-dependent RNA helicase dbp2 OS=Aspergill...  41.6    0.027 
sp|P39145|COMFA_BACSU ComF operon protein 1 OS=Bacillus subtilis ...  41.2    0.027 
sp|A1D373|PRP5_NEOFI Pre-mRNA-processing ATP-dependent RNA helica...  41.6    0.028 
sp|Q9NR30|DDX21_HUMAN Nucleolar RNA helicase 2 OS=Homo sapiens OX...  41.6    0.028 
sp|A2QIL2|PRP28_ASPNC Pre-mRNA-splicing ATP-dependent RNA helicas...  41.6    0.029 
sp|P20703|UVSW_BPT4 ATP-dependent DNA helicase uvsW OS=Enterobact...  41.2    0.029 
sp|B6EPA4|RHLB_ALISL ATP-dependent RNA helicase RhlB OS=Aliivibri...  41.2    0.029 
sp|Q4WT99|PRP5_ASPFU Pre-mRNA-processing ATP-dependent RNA helica...  41.6    0.029 
sp|A9IR19|UVRB_BORPD UvrABC system protein B OS=Bordetella petrii...  41.6    0.029 
sp|P0CQ98|PRP5_CRYNJ Pre-mRNA-processing ATP-dependent RNA helica...  41.6    0.029 
sp|P0CQ99|PRP5_CRYNB Pre-mRNA-processing ATP-dependent RNA helica...  41.6    0.029 
sp|Q2U070|DBP2_ASPOR ATP-dependent RNA helicase dbp2 OS=Aspergill...  41.2    0.030 
sp|A9L5D5|RHLB_SHEB9 ATP-dependent RNA helicase RhlB OS=Shewanell...  41.2    0.030 
sp|A6WTD3|RHLB_SHEB8 ATP-dependent RNA helicase RhlB OS=Shewanell...  41.2    0.030 
sp|Q5F485|DDX42_CHICK ATP-dependent RNA helicase DDX42 OS=Gallus ...  41.6    0.030 
sp|Q62095|DDX3Y_MOUSE ATP-dependent RNA helicase DDX3Y OS=Mus mus...  41.2    0.030 
sp|A2C5S6|UVRB_PROM3 UvrABC system protein B OS=Prochlorococcus m...  41.2    0.031 
sp|P38719|DBP8_YEAST ATP-dependent RNA helicase DBP8 OS=Saccharom...  41.2    0.031 
sp|A6ZT77|DBP8_YEAS7 ATP-dependent RNA helicase DBP8 OS=Saccharom...  41.2    0.031 
sp|A3D9I5|RHLB_SHEB5 ATP-dependent RNA helicase RhlB OS=Shewanell...  41.2    0.031 
sp|B8E670|RHLB_SHEB2 ATP-dependent RNA helicase RhlB OS=Shewanell...  41.2    0.031 
sp|Q58083|H669_METJA Probable ATP-dependent RNA helicase MJ0669 O...  40.8    0.031 
sp|A1CKJ0|DBP8_ASPCL ATP-dependent RNA helicase dbp8 OS=Aspergill...  41.2    0.031 
sp|Q7TV80|UVRB_PROMM UvrABC system protein B OS=Prochlorococcus m...  41.2    0.032 
sp|Q49Z29|CSHA_STAS1 DEAD-box ATP-dependent RNA helicase CshA OS=...  41.2    0.032 
sp|A6RUH2|DRS1_BOTFB ATP-dependent RNA helicase drs1 OS=Botryotin...  41.2    0.032 
sp|A6QSQ0|FAL1_AJECN ATP-dependent RNA helicase FAL1 OS=Ajellomyc...  41.2    0.033 
sp|Q75F95|DRS1_EREGS ATP-dependent RNA helicase DRS1 OS=Eremothec...  41.2    0.033 
sp|P33919|RADD_ECOLI Putative DNA repair helicase RadD OS=Escheri...  41.2    0.033 
sp|A7F4L5|DRS1_SCLS1 ATP-dependent RNA helicase drs1 OS=Sclerotin...  41.2    0.033 
sp|A5E1W4|DBP3_LODEL ATP-dependent RNA helicase DBP3 OS=Lodderomy...  41.2    0.034 
sp|A1RFB3|RHLB_SHESW ATP-dependent RNA helicase RhlB OS=Shewanell...  40.8    0.034 
sp|A4YB09|RHLB_SHEPC ATP-dependent RNA helicase RhlB OS=Shewanell...  40.8    0.034 
sp|Q12S35|RHLB_SHEDO ATP-dependent RNA helicase RhlB OS=Shewanell...  40.8    0.034 
sp|Q6LLL5|RHLB_PHOPR ATP-dependent RNA helicase RhlB OS=Photobact...  40.8    0.034 
sp|Q9Y6V7|DDX49_HUMAN Probable ATP-dependent RNA helicase DDX49 O...  40.8    0.035 
sp|Q54QS3|DDX3_DICDI Probable ATP-dependent RNA helicase ddx3 OS=...  41.2    0.035 
sp|Q6CDN5|DBP6_YARLI ATP-dependent RNA helicase DBP6 OS=Yarrowia ...  41.2    0.035 
sp|Q9HGM5|DBP8_SCHPO ATP-dependent RNA helicase dbp8 OS=Schizosac...  40.8    0.035 
sp|Q5ACK7|DRS1_CANAL ATP-dependent RNA helicase DRS1 OS=Candida a...  41.2    0.036 
sp|Q55170|UVRB_SYNY3 UvrABC system protein B OS=Synechocystis sp....  41.2    0.036 
sp|Q54KG1|DDX41_DICDI Probable ATP-dependent RNA helicase ddx41 O...  41.2    0.036 
sp|Q9AKD5|MFD_RICTY Transcription-repair-coupling factor OS=Ricke...  41.2    0.036 
sp|Q1DTB3|FAL1_COCIM ATP-dependent RNA helicase FAL1 OS=Coccidioi...  40.8    0.037 
sp|Q5BCU6|PRP28_EMENI Pre-mRNA-splicing ATP-dependent RNA helicas...  41.2    0.038 
sp|Q9SA27|RH36_ARATH DEAD-box ATP-dependent RNA helicase 36 OS=Ar...  40.8    0.038 
sp|A5E6W6|RRP3_LODEL ATP-dependent rRNA helicase RRP3 OS=Lodderom...  40.8    0.038 
sp|Q59MW2|DBP6_CANAL ATP-dependent RNA helicase DBP6 OS=Candida a...  40.8    0.039 
sp|A5E726|DBP6_LODEL ATP-dependent RNA helicase DBP6 OS=Lodderomy...  40.8    0.039 
sp|Q8W4R3|RH30_ARATH DEAD-box ATP-dependent RNA helicase 30 OS=Ar...  40.8    0.040 
sp|A0PYA5|UVRB_CLONN UvrABC system protein B OS=Clostridium novyi...  40.8    0.040 
sp|A5DAC8|DBP3_PICGU ATP-dependent RNA helicase DBP3 OS=Meyerozym...  40.8    0.041 
sp|Q5GRL3|UVRB_WOLTR UvrABC system protein B OS=Wolbachia sp. sub...  40.8    0.042 
sp|Q2GWJ5|FAL1_CHAGB ATP-dependent RNA helicase FAL1 OS=Chaetomiu...  40.4    0.043 
sp|A6QUM7|DBP10_AJECN ATP-dependent RNA helicase DBP10 OS=Ajellom...  40.8    0.043 
sp|Q7MYL2|RHLB_PHOLL ATP-dependent RNA helicase RhlB OS=Photorhab...  40.4    0.043 
sp|A6ZUA1|DBP3_YEAS7 ATP-dependent RNA helicase DBP3 OS=Saccharom...  40.8    0.044 
sp|Q0HQL1|RHLB_SHESR ATP-dependent RNA helicase RhlB OS=Shewanell...  40.4    0.045 
sp|Q0HN76|RHLB_SHESM ATP-dependent RNA helicase RhlB OS=Shewanell...  40.4    0.045 
sp|B5YJW4|UVRB_THEYD UvrABC system protein B OS=Thermodesulfovibr...  40.8    0.045 
sp|B6J8A0|UVRB_COXB1 UvrABC system protein B OS=Coxiella burnetii...  40.8    0.045 
sp|P0CQ86|DBP5_CRYNJ ATP-dependent RNA helicase DBP5 OS=Cryptococ...  40.8    0.045 
sp|Q7W8V6|UVRB_BORPA UvrABC system protein B OS=Bordetella parape...  40.8    0.046 
sp|Q1E2B2|DRS1_COCIM ATP-dependent RNA helicase DRS1 OS=Coccidioi...  40.8    0.046 
sp|Q4I662|DBP8_GIBZE ATP-dependent RNA helicase DBP8 OS=Gibberell...  40.8    0.046 
sp|A5DKW3|DRS1_PICGU ATP-dependent RNA helicase DRS1 OS=Meyerozym...  40.8    0.046 
sp|Q5L3G9|CSHA_GEOKA DEAD-box ATP-dependent RNA helicase CshA OS=...  40.4    0.046 
sp|Q63NE3|UVRB_BURPS UvrABC system protein B OS=Burkholderia pseu...  40.8    0.046 
sp|Q62CK6|UVRB_BURMA UvrABC system protein B OS=Burkholderia mall...  40.8    0.046 
sp|P20447|DBP3_YEAST ATP-dependent RNA helicase DBP3 OS=Saccharom...  40.8    0.047 
sp|Q921N6|DDX27_MOUSE Probable ATP-dependent RNA helicase DDX27 O...  40.8    0.048 
sp|P0CQ87|DBP5_CRYNB ATP-dependent RNA helicase DBP5 OS=Cryptococ...  40.4    0.049 
sp|A1D6X9|DBP8_NEOFI ATP-dependent RNA helicase dbp8 OS=Neosartor...  40.4    0.049 
sp|B1KQF6|RHLB_SHEWM ATP-dependent RNA helicase RhlB OS=Shewanell...  40.4    0.049 
sp|A4QSS5|DBP2_PYRO7 ATP-dependent RNA helicase DBP2 OS=Pyricular...  40.4    0.049 
sp|Q5APT8|DBP3_CANAL ATP-dependent RNA helicase DBP3 OS=Candida a...  40.4    0.050 
sp|Q9P735|FAL1_NEUCR ATP-dependent RNA helicase fal-1 OS=Neurospo...  40.4    0.050 
sp|O67708|UVRB_AQUAE UvrABC system protein B OS=Aquifex aeolicus ...  40.8    0.050 
sp|Q5H9U9|DDX6L_HUMAN Probable ATP-dependent RNA helicase DDX60-l...  40.8    0.051 
sp|A0KS84|RHLB_SHESA ATP-dependent RNA helicase RhlB OS=Shewanell...  40.4    0.051 
sp|P30958|MFD_ECOLI Transcription-repair-coupling factor OS=Esche...  40.8    0.052 
sp|Q8EJQ5|RHLB_SHEON ATP-dependent RNA helicase RhlB OS=Shewanell...  40.4    0.052 
sp|A3LNL1|PRP28_PICST Pre-mRNA-splicing ATP-dependent RNA helicas...  40.4    0.053 
sp|Q46IE1|UVRB_PROMT UvrABC system protein B OS=Prochlorococcus m...  40.4    0.053 
sp|A2C5B3|UVRB_PROM1 UvrABC system protein B OS=Prochlorococcus m...  40.4    0.053 
sp|A4QU31|FAL1_PYRO7 ATP-dependent RNA helicase FAL1 OS=Pyricular...  40.4    0.053 
sp|Q12TR7|UVRB_METBU UvrABC system protein B OS=Methanococcoides ...  40.4    0.053 
sp|A1SZG4|RHLB_PSYIN ATP-dependent RNA helicase RhlB OS=Psychromo...  40.4    0.054 
sp|Q3ITS0|UVRB_NATPD UvrABC system protein B OS=Natronomonas phar...  40.4    0.054 
sp|P43809|RECG_HAEIN ATP-dependent DNA helicase RecG OS=Haemophil...  40.4    0.054 
sp|B7KC96|UVRB_GLOC7 UvrABC system protein B OS=Gloeothece citrif...  40.4    0.055 
sp|Q761Z9|RH18_ORYSJ DEAD-box ATP-dependent RNA helicase 18 OS=Or...  40.4    0.055 
sp|Q473K3|UVRB_CUPPJ UvrABC system protein B OS=Cupriavidus pinat...  40.4    0.055 
sp|Q0D1K3|PRP5_ASPTN Pre-mRNA-processing ATP-dependent RNA helica...  40.8    0.056 
sp|P32892|DRS1_YEAST ATP-dependent RNA helicase DRS1 OS=Saccharom...  40.4    0.058 
sp|A7A0P8|DRS1_YEAS7 ATP-dependent RNA helicase DRS1 OS=Saccharom...  40.4    0.058 
sp|Q75NR7|RECQ4_MOUSE ATP-dependent DNA helicase Q4 OS=Mus muscul...  40.4    0.058 
sp|Q0CLX0|PRP28_ASPTN Pre-mRNA-splicing ATP-dependent RNA helicas...  40.4    0.058 
sp|A5DLE0|DBP8_PICGU ATP-dependent RNA helicase DBP8 OS=Meyerozym...  40.0    0.058 
sp|Q6FS54|DBP3_CANGA ATP-dependent RNA helicase DBP3 OS=Candida g...  40.4    0.059 
sp|Q9PA24|RHLB_XYLFA ATP-dependent RNA helicase RhlB OS=Xylella f...  40.4    0.059 
sp|A4XKY5|UVRB_CALS8 UvrABC system protein B OS=Caldicellulosirup...  40.4    0.061 
sp|Q5HK76|HSDR_STAEQ Type I restriction enzyme SepRPIP endonuclea...  40.4    0.061 
sp|Q8Y0N2|UVRB_RALN1 UvrABC system protein B OS=Ralstonia nicotia...  40.4    0.062 
sp|A8G0U0|RHLB_SHESH ATP-dependent RNA helicase RhlB OS=Shewanell...  40.0    0.062 
sp|P24782|DBP2_SCHPO ATP-dependent RNA helicase dbp2 OS=Schizosac...  40.4    0.062 
sp|Q86XP3|DDX42_HUMAN ATP-dependent RNA helicase DDX42 OS=Homo sa...  40.4    0.063 
sp|Q5R7D1|DDX42_PONAB ATP-dependent RNA helicase DDX42 OS=Pongo a...  40.4    0.064 
sp|A9KCU2|UVRB_COXBN UvrABC system protein B OS=Coxiella burnetii...  40.4    0.064 
sp|Q83E18|UVRB_COXBU UvrABC system protein B OS=Coxiella burnetii...  40.4    0.064 
sp|A9NC09|UVRB_COXBR UvrABC system protein B OS=Coxiella burnetii...  40.4    0.064 
sp|B6J1E8|UVRB_COXB2 UvrABC system protein B OS=Coxiella burnetii...  40.4    0.064 
sp|Q4JG17|VASAL_PENVA Probable ATP-dependent RNA helicase vasa-li...  40.4    0.064 
sp|Q8SQK9|DHH1_ENCCU ATP-dependent RNA helicase DHH1 OS=Encephali...  40.0    0.065 
sp|Q9JIK5|DDX21_MOUSE Nucleolar RNA helicase 2 OS=Mus musculus OX...  40.4    0.066 
sp|Q11Z64|UVRB_CYTH3 UvrABC system protein B OS=Cytophaga hutchin...  40.4    0.066 
sp|Q5B0J9|DBP2_EMENI ATP-dependent RNA helicase dbp2 OS=Emericell...  40.0    0.066 
sp|A7EM88|FAL1_SCLS1 ATP-dependent RNA helicase fal1 OS=Sclerotin...  40.0    0.067 
sp|A6S4N4|FAL1_BOTFB ATP-dependent RNA helicase fal1 OS=Botryotin...  40.0    0.067 
sp|Q810A7|DDX42_MOUSE ATP-dependent RNA helicase DDX42 OS=Mus mus...  40.4    0.067 
sp|Q879Y6|RHLB_XYLFT ATP-dependent RNA helicase RhlB OS=Xylella f...  40.0    0.068 
sp|Q3JC03|UVRB_NITOC UvrABC system protein B OS=Nitrosococcus oce...  40.0    0.068 
sp|Q3B8Q1|DDX21_RAT Nucleolar RNA helicase 2 OS=Rattus norvegicus...  40.4    0.069 
sp|A5DU73|PRP28_LODEL Pre-mRNA-splicing ATP-dependent RNA helicas...  40.0    0.071 
sp|O29889|XPB_ARCFU DNA 3'-5' translocase XPB OS=Archaeoglobus fu...  40.0    0.071 
sp|Q88LF9|UVRB_PSEPK UvrABC system protein B OS=Pseudomonas putid...  40.0    0.071 
sp|Q5BDW4|PRP5_EMENI Pre-mRNA-processing ATP-dependent RNA helica...  40.4    0.073 
sp|Q2H0R2|DBP10_CHAGB ATP-dependent RNA helicase DBP10 OS=Chaetom...  40.0    0.073 
sp|B4F1V3|RHLB_PROMH ATP-dependent RNA helicase RhlB OS=Proteus m...  40.0    0.074 
sp|Q8CSV3|RECG_STAES ATP-dependent DNA helicase RecG OS=Staphyloc...  40.0    0.075 
sp|Q3KF38|UVRB_PSEPF UvrABC system protein B OS=Pseudomonas fluor...  40.0    0.076 
sp|Q4KF19|UVRB_PSEF5 UvrABC system protein B OS=Pseudomonas fluor...  40.0    0.077 
sp|P25888|RHLE_ECOLI ATP-dependent RNA helicase RhlE OS=Escherich...  39.7    0.080 
sp|Q6CEB8|DRS1_YARLI ATP-dependent RNA helicase DRS1 OS=Yarrowia ...  40.0    0.082 
sp|Q8ENJ5|UVRB_OCEIH UvrABC system protein B OS=Oceanobacillus ih...  40.0    0.083 
sp|Q5N7W4|RH30_ORYSJ DEAD-box ATP-dependent RNA helicase 30 OS=Or...  40.0    0.085 
sp|Q9UHL0|DDX25_HUMAN ATP-dependent RNA helicase DDX25 OS=Homo sa...  39.7    0.087 
sp|B3EFX1|UVRB_CHLL2 UvrABC system protein B OS=Chlorobium limico...  40.0    0.087 
sp|Q64060|DDX4_RAT Probable ATP-dependent RNA helicase DDX4 OS=Ra...  40.0    0.088 
sp|B8CHZ1|RHLB_SHEPW ATP-dependent RNA helicase RhlB OS=Shewanell...  39.7    0.091 
sp|Q92841|DDX17_HUMAN Probable ATP-dependent RNA helicase DDX17 O...  39.7    0.091 
sp|A3LSJ2|DBP6_PICST ATP-dependent RNA helicase DBP6 OS=Scheffers...  39.7    0.092 
sp|Q6CJV1|DRS1_KLULA ATP-dependent RNA helicase DRS1 OS=Kluyverom...  39.7    0.092 
sp|P72174|UVRB_PSEAE UvrABC system protein B OS=Pseudomonas aerug...  39.7    0.093 
sp|Q501J6|DDX17_MOUSE Probable ATP-dependent RNA helicase DDX17 O...  39.7    0.093 
sp|Q5N3H1|UVRB_SYNP6 UvrABC system protein B OS=Synechococcus sp....  39.7    0.093 
sp|Q31QS4|UVRB_SYNE7 UvrABC system protein B OS=Synechococcus elo...  39.7    0.093 
sp|Q41382|RH7_SPIOL DEAD-box ATP-dependent RNA helicase 7 OS=Spin...  39.7    0.094 
sp|B6EGH8|UVRB_ALISL UvrABC system protein B OS=Aliivibrio salmon...  39.7    0.095 
sp|Q7M806|UVRB_WOLSU UvrABC system protein B OS=Wolinella succino...  39.7    0.095 
sp|Q031G7|UVRB_LACLS UvrABC system protein B OS=Lactococcus lacti...  39.7    0.095 
sp|Q10MH8|RH24_ORYSJ DEAD-box ATP-dependent RNA helicase 24 OS=Or...  39.7    0.096 
sp|Q75C39|DBP5_EREGS ATP-dependent RNA helicase DBP5 OS=Eremothec...  39.7    0.096 
sp|Q49VV6|UVRB_STAS1 UvrABC system protein B OS=Staphylococcus sa...  39.7    0.098 
sp|B9MS82|UVRB_CALBD UvrABC system protein B OS=Caldicellulosirup...  39.7    0.10  
sp|A5E058|PRP5_LODEL Pre-mRNA-processing ATP-dependent RNA helica...  39.7    0.11  
sp|A4W1F7|UVRB_STRS2 UvrABC system protein B OS=Streptococcus sui...  39.7    0.11  
sp|Q6MEV1|UVRB_PARUW UvrABC system protein B OS=Protochlamydia am...  39.7    0.11  
sp|Q7ZVA6|IF4A3_DANRE Eukaryotic initiation factor 4A-III OS=Dani...  39.3    0.11  
sp|Q9Y7T7|PRP28_SCHPO Pre-mRNA-splicing ATP-dependent RNA helicas...  39.7    0.11  
sp|Q5WDG7|UVRB_SHOC1 UvrABC system protein B OS=Shouchella clausi...  39.7    0.11  
sp|A4REU9|MAK5_PYRO7 ATP-dependent RNA helicase MAK5 OS=Pyricular...  39.7    0.11  
sp|Q0UAT0|FAL1_PHANO ATP-dependent RNA helicase FAL1 OS=Phaeospha...  39.3    0.11  
sp|Q5ADL0|PRP5_CANAL Pre-mRNA-processing ATP-dependent RNA helica...  39.7    0.12  
sp|P32639|BRR2_YEAST Pre-mRNA-splicing helicase BRR2 OS=Saccharom...  39.7    0.12  
sp|Q8PRZ9|UVRB_METMA UvrABC system protein B OS=Methanosarcina ma...  39.3    0.12  
sp|B8HQA9|UVRB_CYAP4 UvrABC system protein B OS=Cyanothece sp. (s...  39.3    0.12  
sp|C1CKX8|UVRB_STRZP UvrABC system protein B OS=Streptococcus pne...  39.3    0.12  
sp|Q8DPK7|UVRB_STRR6 UvrABC system protein B OS=Streptococcus pne...  39.3    0.12  
sp|Q04K81|UVRB_STRP2 UvrABC system protein B OS=Streptococcus pne...  39.3    0.12  
sp|Q7VXH4|UVRB_BORPE UvrABC system protein B OS=Bordetella pertus...  39.3    0.12  
sp|C1C7L7|UVRB_STRP7 UvrABC system protein B OS=Streptococcus pne...  39.3    0.12  
sp|B5E4X3|UVRB_STRP4 UvrABC system protein B OS=Streptococcus pne...  39.3    0.12  
sp|Q2L244|UVRB_BORA1 UvrABC system protein B OS=Bordetella avium ...  39.3    0.12  
sp|C1CEJ5|UVRB_STRZJ UvrABC system protein B OS=Streptococcus pne...  39.3    0.12  
sp|B2IPP4|UVRB_STRPS UvrABC system protein B OS=Streptococcus pne...  39.3    0.12  
sp|Q54986|UVRB_STRPN UvrABC system protein B OS=Streptococcus pne...  39.3    0.12  
sp|B8ZJQ9|UVRB_STRPJ UvrABC system protein B OS=Streptococcus pne...  39.3    0.12  
sp|Q2UH00|PRP28_ASPOR Pre-mRNA-splicing ATP-dependent RNA helicas...  39.3    0.13  
sp|Q7WK66|UVRB_BORBR UvrABC system protein B OS=Bordetella bronch...  39.3    0.13  
sp|B1IC35|UVRB_STRPI UvrABC system protein B OS=Streptococcus pne...  39.3    0.13  
sp|A1STV6|UVRB_PSYIN UvrABC system protein B OS=Psychromonas ingr...  39.3    0.13  
sp|Q6BLU9|PRP28_DEBHA Pre-mRNA-splicing ATP-dependent RNA helicas...  39.3    0.13  
sp|A1CHL3|PRP28_ASPCL Pre-mRNA-splicing ATP-dependent RNA helicas...  39.3    0.13  
sp|Q6LT47|UVRB_PHOPR UvrABC system protein B OS=Photobacterium pr...  39.3    0.13  
sp|Q4WXW1|DBP8_ASPFU ATP-dependent RNA helicase dbp8 OS=Aspergill...  39.3    0.13  
sp|B8H7K6|UVRB_PSECP UvrABC system protein B OS=Pseudarthrobacter...  39.3    0.13  
sp|Q89AK2|MFD_BUCBP Transcription-repair-coupling factor OS=Buchn...  39.3    0.13  
sp|Q6CT46|DBP3_KLULA ATP-dependent RNA helicase DBP3 OS=Kluyverom...  39.3    0.13  
sp|O05955|MFD_RICPR Transcription-repair-coupling factor OS=Ricke...  39.3    0.13  
sp|A5AA68|DBP8_ASPNC ATP-dependent RNA helicase dbp8 OS=Aspergill...  39.3    0.14  
sp|Q6C347|FAL1_YARLI ATP-dependent RNA helicase FAL1 OS=Yarrowia ...  38.9    0.14  
sp|P45125|UVRB_HAEIN UvrABC system protein B OS=Haemophilus influ...  39.3    0.14  
sp|Q605S7|UVRB_METCA UvrABC system protein B OS=Methylococcus cap...  39.3    0.14  
sp|Q8W4E1|RH47_ARATH DEAD-box ATP-dependent RNA helicase 47, mito...  39.3    0.14  
sp|Q0CNX1|DBP8_ASPTN ATP-dependent RNA helicase dbp8 OS=Aspergill...  39.3    0.14  
sp|P57844|UVRB_PASMU UvrABC system protein B OS=Pasteurella multo...  39.3    0.14  
sp|Q4QJX4|UVRB_HAEI8 UvrABC system protein B OS=Haemophilus influ...  39.3    0.14  
sp|A1D1R8|DRS1_NEOFI ATP-dependent RNA helicase drs1 OS=Neosartor...  39.3    0.14  
sp|A6RGE3|DBP2_AJECN ATP-dependent RNA helicase DBP2 OS=Ajellomyc...  39.3    0.14  
sp|B7UM74|RECG_ECO27 ATP-dependent DNA helicase RecG OS=Escherich...  39.3    0.14  
sp|A3LRW2|DBP3_PICST ATP-dependent RNA helicase DBP3 OS=Scheffers...  38.9    0.14  
sp|Q0CZN5|DRS1_ASPTN ATP-dependent RNA helicase drs1 OS=Aspergill...  39.3    0.14  
sp|A6RW79|PRP5_BOTFB Pre-mRNA-processing ATP-dependent RNA helica...  39.3    0.14  
sp|A6TGG9|RHLB_KLEP7 ATP-dependent RNA helicase RhlB OS=Klebsiell...  38.9    0.14  
sp|Q755W0|FAL1_EREGS ATP-dependent RNA helicase FAL1 OS=Eremothec...  38.9    0.14  
sp|Q4WH83|DBP3_ASPFU ATP-dependent RNA helicase dbp3 OS=Aspergill...  38.9    0.14  
sp|Q93ZG7|RH38_ARATH DEAD-box ATP-dependent RNA helicase 38 OS=Ar...  38.9    0.14  
sp|Q65ST2|UVRB_MANSM UvrABC system protein B OS=Mannheimia succin...  39.3    0.15  
sp|Q5HVA1|UVRB_CAMJR UvrABC system protein B OS=Campylobacter jej...  39.3    0.15  
sp|B0JR86|UVRB_MICAN UvrABC system protein B OS=Microcystis aerug...  39.3    0.15  
sp|Q8CRP6|CSHA_STAES DEAD-box ATP-dependent RNA helicase CshA OS=...  38.9    0.15  
sp|Q91372|DDX4_XENLA Probable ATP-dependent RNA helicase DDX4 OS=...  39.3    0.15  
sp|Q5HME0|CSHA_STAEQ DEAD-box ATP-dependent RNA helicase CshA OS=...  38.9    0.15  
sp|Q480C7|UVRB_COLP3 UvrABC system protein B OS=Colwellia psychre...  39.3    0.15  
sp|P24230|RECG_ECOLI ATP-dependent DNA helicase RecG OS=Escherich...  39.3    0.15  
sp|Q9SQV1|RH40_ARATH DEAD-box ATP-dependent RNA helicase 40 OS=Ar...  39.3    0.15  
sp|Q7NTA7|UVRB_CHRVO UvrABC system protein B OS=Chromobacterium v...  39.3    0.15  
sp|Q9PPM7|UVRB_CAMJE UvrABC system protein B OS=Campylobacter jej...  38.9    0.15  
sp|Q72XV1|UVRB_BACC1 UvrABC system protein B OS=Bacillus cereus (...  38.9    0.15  
sp|P41380|IF4A3_NICPL Eukaryotic initiation factor 4A-3 OS=Nicoti...  38.9    0.15  
sp|Q8XD86|RECG_ECO57 ATP-dependent DNA helicase RecG OS=Escherich...  38.9    0.15  
sp|Q3SIK7|UVRB_THIDA UvrABC system protein B OS=Thiobacillus deni...  38.9    0.15  
sp|Q6FW42|DRS1_CANGA ATP-dependent RNA helicase DRS1 OS=Candida g...  38.9    0.16  
sp|Q8CWX7|UVRB_STRMU UvrABC system protein B OS=Streptococcus mut...  38.9    0.16  
sp|Q631I6|UVRB_BACCZ UvrABC system protein B OS=Bacillus cereus (...  38.9    0.16  
sp|A2QQA8|PRP5_ASPNC Pre-mRNA-processing ATP-dependent RNA helica...  39.3    0.16  
sp|B5XYY9|RHLB_KLEP3 ATP-dependent RNA helicase RhlB OS=Klebsiell...  38.9    0.16  
sp|B0CE09|UVRB_ACAM1 UvrABC system protein B OS=Acaryochloris mar...  38.9    0.16  
sp|A7ENE0|PRP5_SCLS1 Pre-mRNA-processing ATP-dependent RNA helica...  39.3    0.16  
sp|A6SFV4|DBP8_BOTFB ATP-dependent RNA helicase dbp8 OS=Botryotin...  38.9    0.16  
sp|Q9CWT6|DDX28_MOUSE Probable ATP-dependent RNA helicase DDX28 O...  38.9    0.16  
sp|Q5P0E7|UVRB_AROAE UvrABC system protein B OS=Aromatoleum aroma...  38.9    0.16  
sp|Q8NJM2|DBP10_ASPFU ATP-dependent RNA helicase dbp10 OS=Aspergi...  39.3    0.16  
sp|Q6HBC2|UVRB_BACHK UvrABC system protein B OS=Bacillus thuringi...  38.9    0.17  
sp|Q815I3|UVRB_BACCR UvrABC system protein B OS=Bacillus cereus (...  38.9    0.17  
sp|Q81X47|UVRB_BACAN UvrABC system protein B OS=Bacillus anthraci...  38.9    0.17  
sp|Q4I830|DRS1_GIBZE ATP-dependent RNA helicase DRS1 OS=Gibberell...  38.9    0.17  
sp|Q6BML1|PRP5_DEBHA Pre-mRNA-processing ATP-dependent RNA helica...  38.9    0.17  
sp|Q97LQ2|UVRB_CLOAB UvrABC system protein B OS=Clostridium aceto...  38.9    0.17  
sp|Q48KA6|UVRB_PSE14 UvrABC system protein B OS=Pseudomonas savas...  38.9    0.17  
sp|Q5XBN4|UVRB_STRP6 UvrABC system protein B OS=Streptococcus pyo...  38.9    0.17  
sp|Q55CP6|DDX1_DICDI Probable ATP-dependent RNA helicase ddx1 OS=...  38.9    0.17  
sp|Q884C9|UVRB_PSESM UvrABC system protein B OS=Pseudomonas syrin...  38.9    0.17  
sp|Q4WRV2|DRS1_ASPFU ATP-dependent RNA helicase drs1 OS=Aspergill...  38.9    0.17  
sp|A5DE68|FAL1_PICGU ATP-dependent RNA helicase FAL1 OS=Meyerozym...  38.5    0.17  
sp|Q4L7W0|CSHA_STAHJ DEAD-box ATP-dependent RNA helicase CshA OS=...  38.9    0.17  
sp|Q2UKX3|DBP8_ASPOR ATP-dependent RNA helicase dbp8 OS=Aspergill...  38.5    0.17  
sp|Q1JGE8|UVRB_STRPD UvrABC system protein B OS=Streptococcus pyo...  38.9    0.17  
sp|Q4ZV05|UVRB_PSEU2 UvrABC system protein B OS=Pseudomonas syrin...  38.9    0.17  
sp|Q47EI2|UVRB_DECAR UvrABC system protein B OS=Dechloromonas aro...  38.9    0.18  
sp|Q6LZA2|UVRB_METMP UvrABC system protein B OS=Methanococcus mar...  38.9    0.18  
sp|C0MDC6|UVRB_STRS7 UvrABC system protein B OS=Streptococcus equ...  38.9    0.18  
sp|A0RPB3|UVRB_CAMFF UvrABC system protein B OS=Campylobacter fet...  38.9    0.18  
sp|Q2GUI4|DBP3_CHAGB ATP-dependent RNA helicase DBP3 OS=Chaetomiu...  38.9    0.18  
sp|B4U3P4|UVRB_STREM UvrABC system protein B OS=Streptococcus equ...  38.9    0.18  
sp|Q9DGP9|DDX25_XENLA ATP-dependent RNA helicase DDX25 OS=Xenopus...  38.5    0.18  
sp|Q87MX6|UVRB_VIBPA UvrABC system protein B OS=Vibrio parahaemol...  38.9    0.18  
sp|Q8P0J7|UVRB_STRP8 UvrABC system protein B OS=Streptococcus pyo...  38.9    0.18  
sp|Q5UYC8|UVRB_HALMA UvrABC system protein B OS=Haloarcula marism...  38.9    0.18  
sp|F1NTD6|ASCC3_CHICK Activating signal cointegrator 1 complex su...  38.9    0.19  
sp|Q0SW76|UVRB_CLOPS UvrABC system protein B OS=Clostridium perfr...  38.9    0.19  
sp|Q48SZ1|UVRB_STRPM UvrABC system protein B OS=Streptococcus pyo...  38.9    0.19  
sp|C0MBD7|UVRB_STRE4 UvrABC system protein B OS=Streptococcus equ...  38.9    0.19  
sp|P0DH39|UVRB_STRPQ UvrABC system protein B OS=Streptococcus pyo...  38.9    0.19  
sp|Q1JLB5|UVRB_STRPC UvrABC system protein B OS=Streptococcus pyo...  38.9    0.19  
sp|Q1JBD1|UVRB_STRPB UvrABC system protein B OS=Streptococcus pyo...  38.9    0.19  
sp|P0DH38|UVRB_STRP3 UvrABC system protein B OS=Streptococcus pyo...  38.9    0.19  
sp|Q3K051|UVRB_STRA1 UvrABC system protein B OS=Streptococcus aga...  38.9    0.19  
sp|A2RE43|UVRB_STRPG UvrABC system protein B OS=Streptococcus pyo...  38.9    0.19  
sp|P67425|UVRB_STAAN UvrABC system protein B OS=Staphylococcus au...  38.9    0.19  
sp|P67424|UVRB_STAAM UvrABC system protein B OS=Staphylococcus au...  38.9    0.19  
sp|A7ESL7|DBP10_SCLS1 ATP-dependent RNA helicase dbp10 OS=Sclerot...  38.9    0.19  
sp|Q8DYL6|UVRB_STRA5 UvrABC system protein B OS=Streptococcus aga...  38.9    0.19  
sp|Q8E471|UVRB_STRA3 UvrABC system protein B OS=Streptococcus aga...  38.9    0.19  
sp|Q0TUD0|UVRB_CLOP1 UvrABC system protein B OS=Clostridium perfr...  38.9    0.20  
sp|B5XLX7|UVRB_STRPZ UvrABC system protein B OS=Streptococcus pyo...  38.9    0.20  
sp|Q99ZA5|UVRB_STRP1 UvrABC system protein B OS=Streptococcus pyo...  38.9    0.20  
sp|Q6GIN3|UVRB_STAAR UvrABC system protein B OS=Staphylococcus au...  38.9    0.20  
sp|Q5HHR0|UVRB_STAAC UvrABC system protein B OS=Staphylococcus au...  38.9    0.20  
sp|P45128|MFD_HAEIN Transcription-repair-coupling factor OS=Haemo...  38.9    0.20  
sp|Q1DP69|DBP2_COCIM ATP-dependent RNA helicase DBP2 OS=Coccidioi...  38.5    0.20  
sp|Q4P9P3|DRS1_USTMA ATP-dependent RNA helicase DRS1 OS=Ustilago ...  38.9    0.20  
sp|Q46323|UVRB_CLOPE UvrABC system protein B OS=Clostridium perfr...  38.5    0.20  
sp|A5DK47|DBP6_PICGU ATP-dependent RNA helicase DBP6 OS=Meyerozym...  38.5    0.20  
sp|Q8R8M4|UVRB_CALS4 UvrABC system protein B OS=Caldanaerobacter ...  38.5    0.20  
sp|Q3A8D0|UVRB_SYNC1 UvrABC system protein B OS=Syntrophotalea ca...  38.5    0.20  
sp|Q8NXM0|UVRB_STAAW UvrABC system protein B OS=Staphylococcus au...  38.5    0.20  
sp|Q6GB72|UVRB_STAAS UvrABC system protein B OS=Staphylococcus au...  38.5    0.20  
sp|P0CQ76|DBP2_CRYNJ ATP-dependent RNA helicase DBP2-A OS=Cryptoc...  38.5    0.20  
sp|P0CQ77|DBP2_CRYNB ATP-dependent RNA helicase DBP2-A OS=Cryptoc...  38.5    0.20  
sp|F4INA9|RECG_ARATH ATP-dependent DNA helicase homolog RECG, chl...  38.9    0.21  
sp|Q83S42|UVRB_SHIFL UvrABC system protein B OS=Shigella flexneri...  38.5    0.21  
sp|Q0T6I1|UVRB_SHIF8 UvrABC system protein B OS=Shigella flexneri...  38.5    0.21  
sp|Q5K5B6|RH57_ORYSJ DEAD-box ATP-dependent RNA helicase 57 OS=Or...  38.5    0.21  
sp|A4WG30|RHLB_ENT38 ATP-dependent RNA helicase RhlB OS=Enterobac...  38.5    0.21  
sp|Q7UZL3|UVRB_PROMP UvrABC system protein B OS=Prochlorococcus m...  38.5    0.21  
sp|Q9UJV9|DDX41_HUMAN Probable ATP-dependent RNA helicase DDX41 O...  38.5    0.21  
sp|A2RIP3|UVRB_LACLM UvrABC system protein B OS=Lactococcus lacti...  38.5    0.21  
sp|Q61496|DDX4_MOUSE ATP-dependent RNA helicase DDX4 OS=Mus muscu...  38.5    0.22  
sp|B9DSH1|UVRB_STRU0 UvrABC system protein B OS=Streptococcus ube...  38.5    0.22  
sp|Q8CGS6|DPOLQ_MOUSE DNA polymerase theta OS=Mus musculus OX=100...  38.9    0.22  
sp|P44922|RHLB_HAEIN ATP-dependent RNA helicase RhlB OS=Haemophil...  38.5    0.22  
sp|Q53RK8|RH21_ORYSJ DEAD-box ATP-dependent RNA helicase 21 OS=Or...  38.5    0.22  
sp|A6QXC1|DBP3_AJECN ATP-dependent RNA helicase DBP3 OS=Ajellomyc...  38.5    0.22  
sp|Q8CPZ0|UVRB_STAES UvrABC system protein B OS=Staphylococcus ep...  38.5    0.22  
sp|Q6BZ77|DBP3_DEBHA ATP-dependent RNA helicase DBP3 OS=Debaryomy...  38.5    0.22  
sp|Q55D61|IF4A_DICDI Eukaryotic initiation factor 4A OS=Dictyoste...  38.1    0.22  
sp|A3LX02|SPB4_PICST ATP-dependent rRNA helicase SPB4 OS=Scheffer...  38.5    0.22  
sp|B0SLS0|UVRB_LEPBP UvrABC system protein B OS=Leptospira biflex...  38.5    0.22  
sp|B0SDE2|UVRB_LEPBA UvrABC system protein B OS=Leptospira biflex...  38.5    0.22  
sp|P96614|CSHA_BACSU DEAD-box ATP-dependent RNA helicase CshA OS=...  38.5    0.22  
sp|Q82WA9|UVRB_NITEU UvrABC system protein B OS=Nitrosomonas euro...  38.5    0.22  
sp|Q5HQX0|UVRB_STAEQ UvrABC system protein B OS=Staphylococcus ep...  38.5    0.23  
sp|B5YY28|RHLB_ECO5E ATP-dependent RNA helicase RhlB OS=Escherich...  38.1    0.23  
sp|Q1J665|UVRB_STRPF UvrABC system protein B OS=Streptococcus pyo...  38.5    0.23  
sp|Q0E3X4|RH35A_ORYSJ DEAD-box ATP-dependent RNA helicase 35A OS=...  38.5    0.23  
sp|A3CNJ9|UVRB_STRSV UvrABC system protein B OS=Streptococcus san...  38.5    0.23  
sp|P0CQ93|DRS1_CRYNB ATP-dependent RNA helicase DRS1 OS=Cryptococ...  38.5    0.23  
sp|P53327|ASCC3_YEAST RQC trigger complex helicase SLH1 OS=Saccha...  38.5    0.24  
sp|Q5KVB5|UVRB_GEOKA UvrABC system protein B OS=Geobacillus kaust...  38.5    0.24  
sp|A5UI36|RHLB_HAEIG ATP-dependent RNA helicase RhlB OS=Haemophil...  38.1    0.24  
sp|Q91VN6|DDX41_MOUSE Probable ATP-dependent RNA helicase DDX41 O...  38.5    0.24  
sp|P56981|UVRB_BACCA UvrABC system protein B OS=Bacillus caldoten...  38.5    0.24  
sp|P37954|UVRB_BACSU UvrABC system protein B OS=Bacillus subtilis...  38.5    0.24  
sp|Q6BL34|DBP10_DEBHA ATP-dependent RNA helicase DBP10 OS=Debaryo...  38.5    0.24  
sp|A5UDI1|RHLB_HAEIE ATP-dependent RNA helicase RhlB OS=Haemophil...  38.1    0.24  
sp|Q5JK84|RH15_ORYSJ DEAD-box ATP-dependent RNA helicase 15 OS=Or...  38.1    0.24  
sp|B1LLV3|RHLB_ECOSM ATP-dependent RNA helicase RhlB OS=Escherich...  38.1    0.24  
sp|B2A713|UVRB_NATTJ UvrABC system protein B OS=Natranaerobius th...  38.5    0.24  
sp|P0CQ92|DRS1_CRYNJ ATP-dependent RNA helicase DRS1 OS=Cryptococ...  38.5    0.24  
sp|Q0JM17|RH56_ORYSJ DEAD-box ATP-dependent RNA helicase 56 OS=Or...  38.1    0.24  
sp|Q6FQU5|DHH1_CANGA ATP-dependent RNA helicase DHH1 OS=Candida g...  38.1    0.24  
sp|Q4L4I5|UVRB_STAHJ UvrABC system protein B OS=Staphylococcus ha...  38.5    0.25  
sp|Q9V0A9|HELS_PYRAB ATP-dependent DNA helicase Hel308 OS=Pyrococ...  38.5    0.25  
sp|P10125|UVRB_MICLC UvrABC system protein B OS=Micrococcus luteu...  38.5    0.25  
sp|Q329V8|RHLB_SHIDS ATP-dependent RNA helicase RhlB OS=Shigella ...  38.1    0.25  
sp|Q92H58|MFD_RICCN Transcription-repair-coupling factor OS=Ricke...  38.5    0.25  
sp|P0A2P0|RHLB_SALTY ATP-dependent RNA helicase RhlB OS=Salmonell...  38.1    0.25  
sp|P0A2P1|RHLB_SALTI ATP-dependent RNA helicase RhlB OS=Salmonell...  38.1    0.25  
sp|B4TNT3|RHLB_SALSV ATP-dependent RNA helicase RhlB OS=Salmonell...  38.1    0.25  
sp|C0Q2V9|RHLB_SALPC ATP-dependent RNA helicase RhlB OS=Salmonell...  38.1    0.25  
sp|A9MXF3|RHLB_SALPB ATP-dependent RNA helicase RhlB OS=Salmonell...  38.1    0.25  
sp|B4SZ26|RHLB_SALNS ATP-dependent RNA helicase RhlB OS=Salmonell...  38.1    0.25  
sp|B4TB13|RHLB_SALHS ATP-dependent RNA helicase RhlB OS=Salmonell...  38.1    0.25  
sp|B5RFS3|RHLB_SALG2 ATP-dependent RNA helicase RhlB OS=Salmonell...  38.1    0.25  
sp|B5QVH2|RHLB_SALEP ATP-dependent RNA helicase RhlB OS=Salmonell...  38.1    0.25  
sp|B5FN74|RHLB_SALDC ATP-dependent RNA helicase RhlB OS=Salmonell...  38.1    0.25  
sp|Q57HT6|RHLB_SALCH ATP-dependent RNA helicase RhlB OS=Salmonell...  38.1    0.25  
sp|B5EZ40|RHLB_SALA4 ATP-dependent RNA helicase RhlB OS=Salmonell...  38.1    0.25  
sp|A8AX17|UVRB_STRGC UvrABC system protein B OS=Streptococcus gor...  38.5    0.25  
sp|Q02748|IF4A_DROME Eukaryotic initiation factor 4A OS=Drosophil...  38.1    0.25  
sp|B5BIS9|RHLB_SALPK ATP-dependent RNA helicase RhlB OS=Salmonell...  38.1    0.26  
sp|Q4WPE9|PRP28_ASPFU Pre-mRNA-splicing ATP-dependent RNA helicas...  38.5    0.26  
sp|Q86IZ9|DDX52_DICDI Probable ATP-dependent RNA helicase ddx52 O...  38.5    0.26  
sp|Q4IP34|PRP5_GIBZE Pre-mRNA-processing ATP-dependent RNA helica...  38.5    0.26  
sp|A5GHU1|UVRB_SYNPW UvrABC system protein B OS=Synechococcus sp....  38.5    0.26  
sp|A9MJ29|RHLB_SALAR ATP-dependent RNA helicase RhlB OS=Salmonell...  38.1    0.26  
sp|Q9CMB4|RECG_PASMU ATP-dependent DNA helicase RecG OS=Pasteurel...  38.5    0.26  
sp|B1L280|UVRB_CLOBM UvrABC system protein B OS=Clostridium botul...  38.5    0.26  
sp|Q9CI06|UVRB_LACLA UvrABC system protein B OS=Lactococcus lacti...  38.5    0.26  
sp|C1CR65|UVRB_STRZT UvrABC system protein B OS=Streptococcus pne...  38.1    0.26  
sp|Q7UA24|UVRB_PARMW UvrABC system protein B OS=Parasynechococcus...  38.1    0.27  
sp|Q31UK5|RHLB_SHIBS ATP-dependent RNA helicase RhlB OS=Shigella ...  38.1    0.27  
sp|B2TU12|RHLB_SHIB3 ATP-dependent RNA helicase RhlB OS=Shigella ...  38.1    0.27  
sp|Q1E0Z3|DBP8_COCIM ATP-dependent RNA helicase DBP8 OS=Coccidioi...  38.1    0.27  
sp|Q03SM9|UVRB_LEVBA UvrABC system protein B OS=Levilactobacillus...  38.1    0.27  
sp|Q3YVI4|RHLB_SHISS ATP-dependent RNA helicase RhlB OS=Shigella ...  38.1    0.27  
sp|P0A8K0|RHLB_SHIFL ATP-dependent RNA helicase RhlB OS=Shigella ...  38.1    0.27  
sp|Q1R4F9|RHLB_ECOUT ATP-dependent RNA helicase RhlB OS=Escherich...  38.1    0.27  
sp|B6I4B6|RHLB_ECOSE ATP-dependent RNA helicase RhlB OS=Escherich...  38.1    0.27  
sp|P0A8J8|RHLB_ECOLI ATP-dependent RNA helicase RhlB OS=Escherich...  38.1    0.27  
sp|B1IWC0|RHLB_ECOLC ATP-dependent RNA helicase RhlB OS=Escherich...  38.1    0.27  
sp|P0A8J9|RHLB_ECOL6 ATP-dependent RNA helicase RhlB OS=Escherich...  38.1    0.27  
sp|Q0TAU3|RHLB_ECOL5 ATP-dependent RNA helicase RhlB OS=Escherich...  38.1    0.27  
sp|A1AHV0|RHLB_ECOK1 ATP-dependent RNA helicase RhlB OS=Escherich...  38.1    0.27  
sp|A8A6N4|RHLB_ECOHS ATP-dependent RNA helicase RhlB OS=Escherich...  38.1    0.27  
sp|B1X9Z4|RHLB_ECODH ATP-dependent RNA helicase RhlB OS=Escherich...  38.1    0.27  
sp|C4ZZ48|RHLB_ECOBW ATP-dependent RNA helicase RhlB OS=Escherich...  38.1    0.27  
sp|B7M5C7|RHLB_ECO8A ATP-dependent RNA helicase RhlB OS=Escherich...  38.1    0.27  
sp|B7MR01|RHLB_ECO81 ATP-dependent RNA helicase RhlB OS=Escherich...  38.1    0.27  
sp|B7L8B6|RHLB_ECO55 ATP-dependent RNA helicase RhlB OS=Escherich...  38.1    0.27  
sp|B7MGJ1|RHLB_ECO45 ATP-dependent RNA helicase RhlB OS=Escherich...  38.1    0.27  
sp|B7UMN5|RHLB_ECO27 ATP-dependent RNA helicase RhlB OS=Escherich...  38.1    0.27  
sp|A7ZTY2|RHLB_ECO24 ATP-dependent RNA helicase RhlB OS=Escherich...  38.1    0.27  
sp|Q5NFN4|UVRB_FRATT UvrABC system protein B OS=Francisella tular...  38.1    0.27  
sp|Q9Y7C4|ROK1_CANAL ATP-dependent RNA helicase CHR1 OS=Candida a...  38.1    0.28  
sp|Q10202|DBP3_SCHPO ATP-dependent RNA helicase dbp3 OS=Schizosac...  38.1    0.28  
sp|B7LU75|RHLB_ESCF3 ATP-dependent RNA helicase RhlB OS=Escherich...  38.1    0.28  
sp|Q054D2|UVRB_LEPBL UvrABC system protein B OS=Leptospira borgpe...  38.1    0.28  
sp|Q04QJ9|UVRB_LEPBJ UvrABC system protein B OS=Leptospira borgpe...  38.1    0.28  
sp|Q8H0U8|RH42_ARATH DEAD-box ATP-dependent RNA helicase 42 OS=Ar...  38.5    0.28  
sp|Q9NXZ2|DDX43_HUMAN Probable ATP-dependent RNA helicase DDX43 O...  38.1    0.28  
sp|B7NF85|RHLB_ECOLU ATP-dependent RNA helicase RhlB OS=Escherich...  38.1    0.28  
sp|B7NTG2|RHLB_ECO7I ATP-dependent RNA helicase RhlB OS=Escherich...  38.1    0.28  
sp|Q9VHS8|IF4A3_DROME Eukaryotic initiation factor 4A-III OS=Dros...  38.1    0.28  
sp|Q88YI8|UVRB_LACPL UvrABC system protein B OS=Lactiplantibacill...  38.1    0.28  
sp|Q0SYX0|RHLB_SHIF8 ATP-dependent RNA helicase RhlB OS=Shigella ...  38.1    0.28  
sp|A7MQI2|RHLB_CROS8 ATP-dependent RNA helicase RhlB OS=Cronobact...  38.1    0.28  
sp|B7LJY3|UVRB_ESCF3 UvrABC system protein B OS=Escherichia fergu...  38.1    0.28  
sp|Q32I48|UVRB_SHIDS UvrABC system protein B OS=Shigella dysenter...  38.1    0.28  
sp|Q8FJP8|UVRB_ECOL6 UvrABC system protein B OS=Escherichia coli ...  38.1    0.28  
sp|Q0TJR9|UVRB_ECOL5 UvrABC system protein B OS=Escherichia coli ...  38.1    0.28  
sp|B7MQN2|UVRB_ECO81 UvrABC system protein B OS=Escherichia coli ...  38.1    0.28  
sp|B7NNK9|UVRB_ECO7I UvrABC system protein B OS=Escherichia coli ...  38.1    0.28  
sp|A3PFD7|UVRB_PROM0 UvrABC system protein B OS=Prochlorococcus m...  38.1    0.29  
sp|Q3Z405|UVRB_SHISS UvrABC system protein B OS=Shigella sonnei (...  38.1    0.29  
sp|Q324B3|UVRB_SHIBS UvrABC system protein B OS=Shigella boydii s...  38.1    0.29  
sp|B2TVF1|UVRB_SHIB3 UvrABC system protein B OS=Shigella boydii s...  38.1    0.29  
sp|B4TC52|UVRB_SALHS UvrABC system protein B OS=Salmonella heidel...  38.1    0.29  
sp|B5XYX2|UVRB_KLEP3 UvrABC system protein B OS=Klebsiella pneumo...  38.1    0.29  
sp|Q1REF1|UVRB_ECOUT UvrABC system protein B OS=Escherichia coli ...  38.1    0.29  
sp|B1LM70|UVRB_ECOSM UvrABC system protein B OS=Escherichia coli ...  38.1    0.29  
sp|B6I7T4|UVRB_ECOSE UvrABC system protein B OS=Escherichia coli ...  38.1    0.29  
sp|B7NA78|UVRB_ECOLU UvrABC system protein B OS=Escherichia coli ...  38.1    0.29  
sp|P0A8F8|UVRB_ECOLI UvrABC system protein B OS=Escherichia coli ...  38.1    0.29  
sp|B1IXI9|UVRB_ECOLC UvrABC system protein B OS=Escherichia coli ...  38.1    0.29  
sp|A1A921|UVRB_ECOK1 UvrABC system protein B OS=Escherichia coli ...  38.1    0.29  
sp|A7ZY35|UVRB_ECOHS UvrABC system protein B OS=Escherichia coli ...  38.1    0.29  
sp|B1X7A9|UVRB_ECODH UvrABC system protein B OS=Escherichia coli ...  38.1    0.29  
sp|C4ZXV1|UVRB_ECOBW UvrABC system protein B OS=Escherichia coli ...  38.1    0.29  
sp|B7M751|UVRB_ECO8A UvrABC system protein B OS=Escherichia coli ...  38.1    0.29  
sp|B5YRL8|UVRB_ECO5E UvrABC system protein B OS=Escherichia coli ...  38.1    0.29  
sp|P0A8F9|UVRB_ECO57 UvrABC system protein B OS=Escherichia coli ...  38.1    0.29  
sp|B7LC61|UVRB_ECO55 UvrABC system protein B OS=Escherichia coli ...  38.1    0.29  
sp|B7MGN7|UVRB_ECO45 UvrABC system protein B OS=Escherichia coli ...  38.1    0.29  
sp|B7ULX6|UVRB_ECO27 UvrABC system protein B OS=Escherichia coli ...  38.1    0.29  
sp|A7ZJI8|UVRB_ECO24 UvrABC system protein B OS=Escherichia coli ...  38.1    0.29  
sp|B7GSZ2|UVRB_BIFLS UvrABC system protein B OS=Bifidobacterium l...  38.1    0.29  
sp|Q8Z889|UVRB_SALTI UvrABC system protein B OS=Salmonella typhi ...  38.1    0.29  
sp|A6T6L9|UVRB_KLEP7 UvrABC system protein B OS=Klebsiella pneumo...  38.1    0.29  
sp|A1R6F3|UVRB_PAEAT UvrABC system protein B OS=Paenarthrobacter ...  38.1    0.29  
sp|Q8XAT4|RHLB_ECO57 ATP-dependent RNA helicase RhlB OS=Escherich...  38.1    0.29  
sp|Q9LU46|RH35_ARATH DEAD-box ATP-dependent RNA helicase 35 OS=Ar...  38.1    0.29  
sp|Q8ZQQ4|UVRB_SALTY UvrABC system protein B OS=Salmonella typhim...  38.1    0.29  
sp|B4TQU3|UVRB_SALSV UvrABC system protein B OS=Salmonella schwar...  38.1    0.29  
sp|C0PWY7|UVRB_SALPC UvrABC system protein B OS=Salmonella paraty...  38.1    0.29  
sp|A9MTI2|UVRB_SALPB UvrABC system protein B OS=Salmonella paraty...  38.1    0.29  
sp|B4SZK1|UVRB_SALNS UvrABC system protein B OS=Salmonella newpor...  38.1    0.29  
sp|B5R765|UVRB_SALG2 UvrABC system protein B OS=Salmonella gallin...  38.1    0.29  
sp|B5QX69|UVRB_SALEP UvrABC system protein B OS=Salmonella enteri...  38.1    0.29  
sp|B5FP65|UVRB_SALDC UvrABC system protein B OS=Salmonella dublin...  38.1    0.29  
sp|Q57RF9|UVRB_SALCH UvrABC system protein B OS=Salmonella choler...  38.1    0.29  
sp|B5F076|UVRB_SALA4 UvrABC system protein B OS=Salmonella agona ...  38.1    0.29  
sp|Q10RI7|RH38_ORYSJ DEAD-box ATP-dependent RNA helicase 38 OS=Or...  38.1    0.29  
sp|P57381|MFD_BUCAI Transcription-repair-coupling factor OS=Buchn...  38.1    0.29  
sp|B5BC27|UVRB_SALPK UvrABC system protein B OS=Salmonella paraty...  38.1    0.29  
sp|Q5PG52|UVRB_SALPA UvrABC system protein B OS=Salmonella paraty...  38.1    0.29  
sp|A7GIY3|UVRB_CLOBL UvrABC system protein B OS=Clostridium botul...  38.1    0.30  
sp|B1IFX3|UVRB_CLOBK UvrABC system protein B OS=Clostridium botul...  38.1    0.30  
sp|A7FYY1|UVRB_CLOB1 UvrABC system protein B OS=Clostridium botul...  38.1    0.30  
sp|A4W8C2|UVRB_ENT38 UvrABC system protein B OS=Enterobacter sp. ...  38.1    0.30  
sp|A9BD93|UVRB_PROM4 UvrABC system protein B OS=Prochlorococcus m...  38.1    0.30  
sp|B1JQ11|RHLB_YERPY ATP-dependent RNA helicase RhlB OS=Yersinia ...  37.7    0.30  
sp|Q66G19|RHLB_YERPS ATP-dependent RNA helicase RhlB OS=Yersinia ...  37.7    0.30  
sp|A4TRC8|RHLB_YERPP ATP-dependent RNA helicase RhlB OS=Yersinia ...  37.7    0.30  
sp|Q1CNK3|RHLB_YERPN ATP-dependent RNA helicase RhlB OS=Yersinia ...  37.7    0.30  
sp|Q8ZAD8|RHLB_YERPE ATP-dependent RNA helicase RhlB OS=Yersinia ...  37.7    0.30  
sp|B2K046|RHLB_YERPB ATP-dependent RNA helicase RhlB OS=Yersinia ...  37.7    0.30  
sp|Q1CBQ4|RHLB_YERPA ATP-dependent RNA helicase RhlB OS=Yersinia ...  37.7    0.30  
sp|A7FD47|RHLB_YERP3 ATP-dependent RNA helicase RhlB OS=Yersinia ...  37.7    0.30  
sp|C1FMK5|UVRB_CLOBJ UvrABC system protein B OS=Clostridium botul...  38.1    0.30  
sp|C3KV20|UVRB_CLOB6 UvrABC system protein B OS=Clostridium botul...  38.1    0.30  
sp|Q837R9|UVRB_ENTFA UvrABC system protein B OS=Enterococcus faec...  38.1    0.30  
sp|P27639|IF4A_CAEEL Eukaryotic initiation factor 4A OS=Caenorhab...  37.7    0.31  
sp|A9MJE1|UVRB_SALAR UvrABC system protein B OS=Salmonella arizon...  38.1    0.31  
sp|O51528|RECG_BORBU ATP-dependent DNA helicase RecG OS=Borreliel...  38.1    0.31  
sp|Q088J2|RHLB_SHEFN ATP-dependent RNA helicase RhlB OS=Shewanell...  37.7    0.31  
sp|A6SFW7|DBP2_BOTFB ATP-dependent RNA helicase dbp2 OS=Botryotin...  38.1    0.32  
sp|Q5RC67|DDX23_PONAB Probable ATP-dependent RNA helicase DDX23 O...  38.1    0.32  
sp|A8AJ07|UVRB_CITK8 UvrABC system protein B OS=Citrobacter koser...  38.1    0.32  
sp|Q7NJH7|UVRB_GLOVI UvrABC system protein B OS=Gloeobacter viola...  38.1    0.32  
sp|Q54G57|ASCC3_DICDI Activating signal cointegrator 1 complex su...  38.1    0.32  
sp|A8WK63|RECQ1_CAEBR Putative ATP-dependent DNA helicase Q1 OS=C...  38.1    0.33  
sp|A1CX72|PRP28_NEOFI Pre-mRNA-splicing ATP-dependent RNA helicas...  38.1    0.33  
sp|O59025|HELS_PYRHO ATP-dependent DNA helicase Hel308 OS=Pyrococ...  38.1    0.33  
sp|A7E436|DBP8_SCLS1 ATP-dependent RNA helicase dbp8 OS=Sclerotin...  37.7    0.33  
sp|Q03JK4|UVRB_STRTD UvrABC system protein B OS=Streptococcus the...  38.1    0.33  
sp|Q1C942|UVRB_YERPA UvrABC system protein B OS=Yersinia pestis b...  38.1    0.33  
sp|A4TNQ1|UVRB_YERPP UvrABC system protein B OS=Yersinia pestis (...  38.1    0.33  
sp|Q1CFQ8|UVRB_YERPN UvrABC system protein B OS=Yersinia pestis b...  38.1    0.33  
sp|A9R3D3|UVRB_YERPG UvrABC system protein B OS=Yersinia pestis b...  38.1    0.33  
sp|Q8ZGW7|UVRB_YERPE UvrABC system protein B OS=Yersinia pestis O...  38.1    0.33  
sp|Q5M3D5|UVRB_STRT2 UvrABC system protein B OS=Streptococcus the...  38.1    0.34  
sp|Q5LYS1|UVRB_STRT1 UvrABC system protein B OS=Streptococcus the...  38.1    0.34  
sp|A7E449|DBP2_SCLS1 ATP-dependent RNA helicase dbp2 OS=Sclerotin...  37.7    0.34  
sp|Q7S5R1|DBP3_NEUCR ATP-dependent RNA helicase dbp-3 OS=Neurospo...  37.7    0.34  
sp|Q86B47|Y8611_DROME Probable ATP-dependent RNA helicase CG8611 ...  38.1    0.34  
sp|C4K6N8|UVRB_HAMD5 UvrABC system protein B OS=Hamiltonella defe...  38.1    0.34  
sp|Q9BUQ8|DDX23_HUMAN Probable ATP-dependent RNA helicase DDX23 O...  38.1    0.34  
sp|Q31ES7|UVRB_HYDCU UvrABC system protein B OS=Hydrogenovibrio c...  38.1    0.34  
sp|A8GBD1|UVRB_SERP5 UvrABC system protein B OS=Serratia proteama...  37.7    0.35  
sp|B1JSR9|UVRB_YERPY UvrABC system protein B OS=Yersinia pseudotu...  37.7    0.35  
sp|Q66D62|UVRB_YERPS UvrABC system protein B OS=Yersinia pseudotu...  37.7    0.35  
sp|B2K8T5|UVRB_YERPB UvrABC system protein B OS=Yersinia pseudotu...  37.7    0.35  
sp|A7FKM4|UVRB_YERP3 UvrABC system protein B OS=Yersinia pseudotu...  37.7    0.35  
sp|Q2UQI6|DRS1_ASPOR ATP-dependent RNA helicase drs1 OS=Aspergill...  38.1    0.35  
sp|Q7MM80|UVRB_VIBVY UvrABC system protein B OS=Vibrio vulnificus...  37.7    0.35  
sp|Q8D891|UVRB_VIBVU UvrABC system protein B OS=Vibrio vulnificus...  37.7    0.35  
sp|Q3MSQ8|DDX4_PELLE Probable ATP-dependent RNA helicase DDX4 OS=...  37.7    0.36  
sp|Q9NQI0|DDX4_HUMAN Probable ATP-dependent RNA helicase DDX4 OS=...  37.7    0.36  
sp|Q5JGV6|HELS_THEKO ATP-dependent DNA helicase Hel308 OS=Thermoc...  38.1    0.36  
sp|O02494|IF4A_CRYPV Eukaryotic initiation factor 4A OS=Cryptospo...  37.7    0.36  
sp|Q8G5L9|UVRB_BIFLO UvrABC system protein B OS=Bifidobacterium l...  37.7    0.36  
sp|Q8RGR2|UVRB_FUSNN UvrABC system protein B OS=Fusobacterium nuc...  37.7    0.36  
sp|Q8DHC6|UVRB_THEVB UvrABC system protein B OS=Thermosynechococc...  37.7    0.36  
sp|A1JSC3|UVRB_YERE8 UvrABC system protein B OS=Yersinia enteroco...  37.7    0.37  
sp|C6DDU0|UVRB_PECCP UvrABC system protein B OS=Pectobacterium ca...  37.7    0.37  
sp|B2VBW9|UVRB_ERWT9 UvrABC system protein B OS=Erwinia tasmanien...  37.7    0.37  
sp|Q6D3C4|UVRB_PECAS UvrABC system protein B OS=Pectobacterium at...  37.7    0.38  
sp|O75417|DPOLQ_HUMAN DNA polymerase theta OS=Homo sapiens OX=960...  38.1    0.38  
sp|Q5ZI74|DHX30_CHICK ATP-dependent RNA helicase DHX30 OS=Gallus ...  38.1    0.38  
sp|A6SCT6|DBP3_BOTFB ATP-dependent RNA helicase dbp3 OS=Botryotin...  37.7    0.39  
sp|A3Q9R3|RHLB_SHELP ATP-dependent RNA helicase RhlB OS=Shewanell...  37.7    0.39  
sp|A1DG51|DBP3_NEOFI ATP-dependent RNA helicase dbp3 OS=Neosartor...  37.7    0.39  
sp|B4ESU7|UVRB_PROMH UvrABC system protein B OS=Proteus mirabilis...  37.7    0.40  
sp|A4R5B8|DBP10_PYRO7 ATP-dependent RNA helicase DBP10 OS=Pyricul...  37.7    0.40  
sp|Q5E6B5|UVRB_ALIF1 UvrABC system protein B OS=Aliivibrio fische...  37.7    0.40  
sp|B2TQS8|UVRB_CLOBB UvrABC system protein B OS=Clostridium botul...  37.7    0.40  
sp|Q7N6Q1|UVRB_PHOLL UvrABC system protein B OS=Photorhabdus laum...  37.7    0.40  
sp|A8ACT3|RHLB_CITK8 ATP-dependent RNA helicase RhlB OS=Citrobact...  37.4    0.41  
sp|A7EYW0|DBP3_SCLS1 ATP-dependent RNA helicase dbp3 OS=Sclerotin...  37.7    0.41  
sp|A7I3X8|UVRB_CAMHC UvrABC system protein B OS=Campylobacter hom...  37.7    0.41  
sp|Q8F8A9|UVRB_LEPIN UvrABC system protein B OS=Leptospira interr...  37.7    0.41  
sp|Q72N95|UVRB_LEPIC UvrABC system protein B OS=Leptospira interr...  37.7    0.41  
sp|A3N031|UVRB_ACTP2 UvrABC system protein B OS=Actinobacillus pl...  37.7    0.42  
sp|B2UZZ0|UVRB_CLOBA UvrABC system protein B OS=Clostridium botul...  37.7    0.42  
sp|A8G828|RHLB_SERP5 ATP-dependent RNA helicase RhlB OS=Serratia ...  37.4    0.43  
sp|Q9V3C0|DDX41_DROME ATP-dependent RNA helicase abstrakt OS=Dros...  37.7    0.43  
sp|Q5W5U4|DDX4_BOVIN Probable ATP-dependent RNA helicase DDX4 OS=...  37.7    0.44  
sp|Q4UMJ0|MFD_RICFE Transcription-repair-coupling factor OS=Ricke...  37.7    0.44  
sp|A7EAY2|MAK5_SCLS1 ATP-dependent RNA helicase mak5 OS=Sclerotin...  37.7    0.45  
sp|Q9SZB4|RH43_ARATH Putative DEAD-box ATP-dependent RNA helicase...  37.4    0.46  
sp|Q4HZ42|DBP10_GIBZE ATP-dependent RNA helicase DBP10 OS=Gibbere...  37.7    0.46  
sp|Q84TG1|RH57_ARATH DEAD-box ATP-dependent RNA helicase 57 OS=Ar...  37.4    0.46  
sp|Q4R5S7|DDX4_MACFA Probable ATP-dependent RNA helicase DDX4 OS=...  37.4    0.46  
sp|A1DNG2|DBP10_NEOFI ATP-dependent RNA helicase dbp10 OS=Neosart...  37.7    0.47  
sp|Q6GWX0|DDX4_PIG Probable ATP-dependent RNA helicase DDX4 OS=Su...  37.4    0.47  
sp|Q7UFR2|UVRB_RHOBA UvrABC system protein B OS=Rhodopirellula ba...  37.4    0.48  
sp|Q5BFU7|DBP10_EMENI ATP-dependent RNA helicase dbp10 OS=Emerice...  37.4    0.49  
sp|E7F8F4|ASCC3_DANRE Activating signal cointegrator 1 complex su...  37.7    0.49  
sp|Q9SF41|RH45_ARATH DEAD-box ATP-dependent RNA helicase 45 OS=Ar...  37.4    0.49  
sp|Q76PD3|DBP6_SCHPO ATP-dependent RNA helicase dbp6 OS=Schizosac...  37.4    0.49  
sp|Q8TKS3|UVRB_METAC UvrABC system protein B OS=Methanosarcina ac...  37.4    0.50  
sp|Q9HMT9|UVRB_HALSA UvrABC system protein B OS=Halobacterium sal...  37.4    0.50  
sp|Q5X906|UVRB_LEGPA UvrABC system protein B OS=Legionella pneumo...  37.4    0.51  
sp|Q4FZF3|DDX49_MOUSE Probable ATP-dependent RNA helicase DDX49 O...  37.4    0.52  
sp|Q65ED8|UVRB_BACLD UvrABC system protein B OS=Bacillus lichenif...  37.4    0.52  
sp|A5I9P3|UVRB_LEGPC UvrABC system protein B OS=Legionella pneumo...  37.4    0.52  
sp|C5BEJ2|UVRB_EDWI9 UvrABC system protein B OS=Edwardsiella icta...  37.4    0.52  
sp|Q5X0E6|UVRB_LEGPL UvrABC system protein B OS=Legionella pneumo...  37.4    0.54  
sp|O60072|ASCC3_SCHPO RQC trigger complex helicase rqt2 OS=Schizo...  37.4    0.54  
sp|Q65N62|CSHA_BACLD DEAD-box ATP-dependent RNA helicase CshA OS=...  37.0    0.55  
sp|Q4P7Z8|DBP5_USTMA ATP-dependent RNA helicase DBP5 OS=Ustilago ...  37.0    0.55  
sp|C4ZHN1|UVRB_AGARV UvrABC system protein B OS=Agathobacter rect...  37.4    0.55  
sp|Q4R8K5|IF4A1_MACFA Eukaryotic initiation factor 4A-I OS=Macaca...  37.0    0.55  
sp|Q8N3C0|ASCC3_HUMAN Activating signal cointegrator 1 complex su...  37.4    0.56  
sp|Q5ZZD9|UVRB_LEGPH UvrABC system protein B OS=Legionella pneumo...  37.4    0.57  
sp|Q9VNV3|DDX1_DROME ATP-dependent RNA helicase Ddx1 OS=Drosophil...  37.4    0.57  
sp|Q9CJS1|RHLB_PASMU ATP-dependent RNA helicase RhlB OS=Pasteurel...  37.0    0.58  
sp|Q38YA4|UVRB_LATSS UvrABC system protein B OS=Latilactobacillus...  37.4    0.59  
sp|O26542|UVRB_METTH UvrABC system protein B OS=Methanothermobact...  37.4    0.59  
sp|Q7VLL3|UVRB_HAEDU UvrABC system protein B OS=Haemophilus ducre...  37.4    0.59  
sp|A6M2Z0|UVRB_CLOB8 UvrABC system protein B OS=Clostridium beije...  37.0    0.60  
sp|A1CNV8|DRS1_ASPCL ATP-dependent RNA helicase drs1 OS=Aspergill...  37.4    0.60  
sp|Q7RZH4|MAK5_NEUCR ATP-dependent RNA helicase mak-5 OS=Neurospo...  37.4    0.60  
sp|Q6CX73|FAL1_KLULA ATP-dependent RNA helicase FAL1 OS=Kluyverom...  37.0    0.61  
sp|Q0IE10|UVRB_SYNS3 UvrABC system protein B OS=Synechococcus sp....  37.0    0.61  
sp|Q650T9|RH7_ORYSJ DEAD-box ATP-dependent RNA helicase 7 OS=Oryz...  37.0    0.61  
sp|A1CTZ6|DBP10_ASPCL ATP-dependent RNA helicase dbp10 OS=Aspergi...  37.4    0.62  
sp|A0JWN0|UVRB_ARTS2 UvrABC system protein B OS=Arthrobacter sp. ...  37.0    0.62  
sp|E1BNG3|ASCC3_BOVIN Activating signal cointegrator 1 complex su...  37.4    0.62  
sp|B2VG58|RHLB_ERWT9 ATP-dependent RNA helicase RhlB OS=Erwinia t...  37.0    0.62  
sp|Q4I7F9|PRP28_GIBZE Pre-mRNA-splicing ATP-dependent RNA helicas...  37.0    0.64  
sp|E9PZJ8|ASCC3_MOUSE Activating signal cointegrator 1 complex su...  37.4    0.64  
sp|Q4IJH1|DBP3_GIBZE ATP-dependent RNA helicase DBP3 OS=Gibberell...  37.0    0.65  
sp|Q10055|FAL1_SCHPO ATP-dependent RNA helicase fal1 OS=Schizosac...  37.0    0.65  
sp|P05470|YKP4_KLULA Uncharacterized killer plasmid pGKL-2 helica...  37.0    0.65  
sp|Q54TF8|DDX19_DICDI ATP-dependent RNA helicase ddx19 OS=Dictyos...  37.0    0.65  
sp|Q7RYZ7|DBP8_NEUCR ATP-dependent RNA helicase dbp-8 OS=Neurospo...  37.0    0.66  
sp|Q6F9D2|UVRB_ACIAD UvrABC system protein B OS=Acinetobacter bay...  37.0    0.66  
sp|P73421|RECQ_SYNY3 ATP-dependent DNA helicase RecQ OS=Synechocy...  37.0    0.67  
sp|Q2UHC1|DBP10_ASPOR ATP-dependent RNA helicase dbp10 OS=Aspergi...  37.0    0.67  
sp|Q8PFZ3|RHLB_XANAC ATP-dependent RNA helicase RhlB OS=Xanthomon...  37.0    0.68  
sp|A3GHW9|ROK1_PICST ATP-dependent RNA helicase ROK1 OS=Scheffers...  37.0    0.68  
sp|P56996|UVRB_NEIMA UvrABC system protein B OS=Neisseria meningi...  37.0    0.68  
sp|O73946|HELS_PYRFU ATP-dependent DNA helicase Hel308 OS=Pyrococ...  37.0    0.69  
sp|Q5QXB8|UVRB_IDILO UvrABC system protein B OS=Idiomarina loihie...  37.0    0.71  
sp|A7Z985|UVRB_BACVZ UvrABC system protein B OS=Bacillus velezens...  37.0    0.71  
sp|P39517|DHH1_YEAST ATP-dependent RNA helicase DHH1 OS=Saccharom...  37.0    0.71  
sp|A6ZXG9|DHH1_YEAS7 ATP-dependent RNA helicase DHH1 OS=Saccharom...  37.0    0.71  
sp|Q3BNH8|RHLB_XANE5 ATP-dependent RNA helicase RhlB OS=Xanthomon...  37.0    0.71  
sp|Q6AF52|UVRB_LEIXX UvrABC system protein B OS=Leifsonia xyli su...  37.0    0.72  
sp|A8F8W9|UVRB_PSELT UvrABC system protein B OS=Pseudothermotoga ...  37.0    0.72  
sp|F1LPQ2|ASCC3_RAT Activating signal cointegrator 1 complex subu...  37.0    0.72  
sp|O13983|HRQ1_SCHPO ATP-dependent helicase hrq1 OS=Schizosacchar...  37.0    0.73  
sp|Q50939|UVRB_NEIGO UvrABC system protein B OS=Neisseria gonorrh...  37.0    0.73  
sp|Q56243|UVRB_THET8 UvrABC system protein B OS=Thermus thermophi...  37.0    0.75  
sp|Q5F931|UVRB_NEIG1 UvrABC system protein B OS=Neisseria gonorrh...  37.0    0.76  
sp|Q9PER1|UVRB_XYLFA UvrABC system protein B OS=Xylella fastidios...  37.0    0.77  
sp|Q75BS4|DHH1_EREGS ATP-dependent RNA helicase DHH1 OS=Eremothec...  36.6    0.78  
sp|Q87AT6|UVRB_XYLFT UvrABC system protein B OS=Xylella fastidios...  36.6    0.79  
sp|B2I8F9|UVRB_XYLF2 UvrABC system protein B OS=Xylella fastidios...  36.6    0.79  
sp|Q5GUR8|RHLB_XANOR ATP-dependent RNA helicase RhlB OS=Xanthomon...  36.6    0.79  
sp|B0U4J3|UVRB_XYLFM UvrABC system protein B OS=Xylella fastidios...  36.6    0.80  
sp|Q6A9K7|UVRB_CUTAK UvrABC system protein B OS=Cutibacterium acn...  36.6    0.83  
sp|Q47QN5|UVRB_THEFY UvrABC system protein B OS=Thermobifida fusc...  36.6    0.84  
sp|Q2NGT1|UVRB_METST UvrABC system protein B OS=Methanosphaera st...  36.6    0.86  
sp|Q8P4D4|RHLB_XANCP ATP-dependent RNA helicase RhlB OS=Xanthomon...  36.6    0.86  
sp|B0RWT6|RHLB_XANCB ATP-dependent RNA helicase RhlB OS=Xanthomon...  36.6    0.86  
sp|Q4UPY5|RHLB_XANC8 ATP-dependent RNA helicase RhlB OS=Xanthomon...  36.6    0.86  
sp|Q3ATT8|UVRB_CHLCH UvrABC system protein B OS=Chlorobium chloro...  36.6    0.87  
sp|Q928A4|UVRB_LISIN UvrABC system protein B OS=Listeria innocua ...  36.6    0.88  
sp|Q67T57|UVRB_SYMTH UvrABC system protein B OS=Symbiobacterium t...  36.6    0.88  
sp|Q8Y4F5|UVRB_LISMO UvrABC system protein B OS=Listeria monocyto...  36.6    0.90  
sp|Q8SR01|DBP4_ENCCU ATP-dependent RNA helicase DBP4 OS=Encephali...  36.6    0.90  
sp|Q71WT9|UVRB_LISMF UvrABC system protein B OS=Listeria monocyto...  36.6    0.91  
sp|Q4HVW2|SPB4_GIBZE ATP-dependent rRNA helicase SPB4 OS=Gibberel...  36.6    0.91  
sp|Q58524|HELS_METJA ATP-dependent DNA helicase Hel308 OS=Methano...  36.6    0.91  
sp|Q6FQQ6|IF4A_CANGA ATP-dependent RNA helicase eIF4A OS=Candida ...  36.2    0.92  
sp|O33395|UVRB_NEIMB UvrABC system protein B OS=Neisseria meningi...  36.6    0.92  
sp|Q2NJ77|UVRB_AYWBP UvrABC system protein B OS=Aster yellows wit...  36.6    0.94  
sp|Q971U1|XPB1_SULTO DNA 3'-5' helicase/translocase StoXPB1 OS=Su...  36.6    0.95  
sp|Q0UG00|MS116_PHANO ATP-dependent RNA helicase MSS116, mitochon...  36.6    0.96  
sp|Q6YQE1|UVRB_ONYPE UvrABC system protein B OS=Onion yellows phy...  36.6    0.96  
sp|Q3AFF4|UVRB_CARHZ UvrABC system protein B OS=Carboxydothermus ...  36.6    0.99  
sp|B7IEY7|UVRB_THEAB UvrABC system protein B OS=Thermosipho afric...  36.6    1.0   
sp|Q5Z6G5|RH35B_ORYSJ DEAD-box ATP-dependent RNA helicase 35B OS=...  36.2    1.0   
sp|P60843|IF4A1_MOUSE Eukaryotic initiation factor 4A-I OS=Mus mu...  36.2    1.0   
sp|P60842|IF4A1_HUMAN Eukaryotic initiation factor 4A-I OS=Homo s...  36.2    1.0   
sp|Q3SZ54|IF4A1_BOVIN Eukaryotic initiation factor 4A-I OS=Bos ta...  36.2    1.0   
sp|A5DLR3|DBP10_PICGU ATP-dependent RNA helicase DBP10 OS=Meyeroz...  36.6    1.1   
sp|P29562|IF4A1_RABIT Eukaryotic initiation factor 4A-I (Fragment...  36.2    1.1   
sp|A9B464|UVRB_HERA2 UvrABC system protein B OS=Herpetosiphon aur...  36.2    1.1   
sp|A6UN73|HELS_METVS ATP-dependent DNA helicase Hel308 OS=Methano...  36.2    1.1   
sp|Q1EB38|DBP10_COCIM ATP-dependent RNA helicase DBP10 OS=Coccidi...  36.2    1.1   
sp|Q5R5F5|IF4A1_PONAB Eukaryotic initiation factor 4A-I OS=Pongo ...  36.2    1.1   
sp|A5A6N4|IF4A1_PANTR Eukaryotic initiation factor 4A-I OS=Pan tr...  36.2    1.1   
sp|A1CFV3|DBP5_ASPCL ATP-dependent RNA helicase dbp5 OS=Aspergill...  36.2    1.1   
sp|O74393|MAK5_SCHPO ATP-dependent RNA helicase mak5 OS=Schizosac...  36.2    1.1   
sp|Q6BP45|ROK1_DEBHA ATP-dependent RNA helicase ROK1 OS=Debaryomy...  36.2    1.1   
sp|Q8VDW0|DX39A_MOUSE ATP-dependent RNA helicase DDX39A OS=Mus mu...  36.2    1.2   
sp|Q10I26|IF43B_ORYSJ Eukaryotic initiation factor 4A-III homolog...  35.8    1.2   
sp|Q5VNM3|IF43A_ORYSJ Eukaryotic initiation factor 4A-III homolog...  35.8    1.2   
sp|Q5U216|DX39A_RAT ATP-dependent RNA helicase DDX39A OS=Rattus n...  36.2    1.2   
sp|F1LNJ2|U520_RAT U5 small nuclear ribonucleoprotein 200 kDa hel...  36.6    1.2   
sp|P0CR06|DBP10_CRYNJ ATP-dependent RNA helicase DBP10 OS=Cryptoc...  36.2    1.2   
sp|P0CR07|DBP10_CRYNB ATP-dependent RNA helicase DBP10 OS=Cryptoc...  36.2    1.2   
sp|O00148|DX39A_HUMAN ATP-dependent RNA helicase DDX39A OS=Homo s...  35.8    1.2   
sp|Q9LFN6|RH56_ARATH DEAD-box ATP-dependent RNA helicase 56 OS=Ar...  35.8    1.2   
sp|Q56XG6|RH15_ARATH DEAD-box ATP-dependent RNA helicase 15 OS=Ar...  35.8    1.2   
sp|Q1E5R1|DHH1_COCIM ATP-dependent RNA helicase DHH1 OS=Coccidioi...  36.2    1.2   
sp|Q6P4T2|U520_MOUSE U5 small nuclear ribonucleoprotein 200 kDa h...  36.2    1.2   
sp|A2QRY2|DBP10_ASPNC ATP-dependent RNA helicase dbp10 OS=Aspergi...  36.2    1.2   
sp|Q6BT27|FAL1_DEBHA ATP-dependent RNA helicase FAL1 OS=Debaryomy...  35.8    1.2   
sp|Q9W3Y5|Y4443_DROME Putative ATP-dependent RNA helicase CG14443...  36.2    1.3   
sp|Q0CL13|DBP3_ASPTN ATP-dependent RNA helicase dbp3 OS=Aspergill...  35.8    1.3   
sp|Q6CIR0|DBP10_KLULA ATP-dependent RNA helicase DBP10 OS=Kluyver...  36.2    1.3   
sp|Q1EB85|DBP5_COCIM ATP-dependent RNA helicase DBP5 OS=Coccidioi...  35.8    1.3   
sp|A5A6J2|DDX5_PANTR Probable ATP-dependent RNA helicase DDX5 OS=...  36.2    1.3   
sp|Q5ANB2|DBP10_CANAL ATP-dependent RNA helicase DBP10 OS=Candida...  36.2    1.3   
sp|Q5R4I9|DDX5_PONAB Probable ATP-dependent RNA helicase DDX5 OS=...  36.2    1.3   
sp|C5BV49|UVRB_BEUC1 UvrABC system protein B OS=Beutenbergia cave...  36.2    1.3   
sp|Q6C0X2|DHH1_YARLI ATP-dependent RNA helicase DHH1 OS=Yarrowia ...  35.8    1.3   
sp|Q61656|DDX5_MOUSE Probable ATP-dependent RNA helicase DDX5 OS=...  35.8    1.3   
sp|Q94A52|RH2_ARATH Eukaryotic initiation factor 4A-III homolog O...  35.8    1.4   
sp|P17844|DDX5_HUMAN Probable ATP-dependent RNA helicase DDX5 OS=...  35.8    1.4   
sp|A7HKC0|UVRB_FERNB UvrABC system protein B OS=Fervidobacterium ...  35.8    1.4   
sp|A3GFV3|FAL1_PICST ATP-dependent RNA helicase FAL1 OS=Scheffers...  35.8    1.4   
sp|Q7VFX7|UVRB_HELHP UvrABC system protein B OS=Helicobacter hepa...  35.8    1.4   
sp|Q8GXD6|RH49_ARATH DEAD-box ATP-dependent RNA helicase 49 OS=Ar...  35.8    1.4   
sp|Q9Y2R4|DDX52_HUMAN Probable ATP-dependent RNA helicase DDX52 O...  35.8    1.4   
sp|Q821H8|UVRB_CHLCV UvrABC system protein B OS=Chlamydia caviae ...  35.8    1.4   
sp|B3EMK1|UVRB_CHLPB UvrABC system protein B OS=Chlorobium phaeob...  35.8    1.4   
sp|Q4IF76|DBP2_GIBZE ATP-dependent RNA helicase DBP2 OS=Gibberell...  35.8    1.5   
sp|Q0U8V9|DBP8_PHANO ATP-dependent RNA helicase DBP8 OS=Phaeospha...  35.8    1.5   
sp|P0CQ72|FAL1_CRYNJ ATP-dependent RNA helicase FAL1 OS=Cryptococ...  35.8    1.5   
sp|P0CQ73|FAL1_CRYNB ATP-dependent RNA helicase FAL1 OS=Cryptococ...  35.8    1.5   
sp|A7TJ36|DBP3_VANPO ATP-dependent RNA helicase DBP3 OS=Vanderwal...  35.8    1.5   
sp|B7J0S9|UVRB_BORBZ UvrABC system protein B OS=Borreliella burgd...  35.8    1.5   
sp|A5CRU3|UVRB_CLAM3 UvrABC system protein B OS=Clavibacter michi...  35.8    1.5   
sp|Q59ZH9|MAK5_CANAL ATP-dependent RNA helicase MAK5 OS=Candida a...  35.8    1.5   
sp|Q9H8H2|DDX31_HUMAN ATP-dependent DNA helicase DDX31 OS=Homo sa...  35.8    1.6   
sp|O51776|UVRB_BORBU UvrABC system protein B OS=Borreliella burgd...  35.8    1.6   
sp|Q2HFP1|IF4A_CHAGB ATP-dependent RNA helicase eIF4A OS=Chaetomi...  35.4    1.6   
sp|Q65ZT8|UVRB_BORGP UvrABC system protein B OS=Borrelia garinii ...  35.8    1.6   
sp|A2QFL3|DBP3_ASPNC ATP-dependent RNA helicase dbp3 OS=Aspergill...  35.8    1.6   
sp|B0RES6|UVRB_CLASE UvrABC system protein B OS=Clavibacter seped...  35.8    1.6   
sp|Q6CDV4|IF4A_YARLI ATP-dependent RNA helicase eIF4A OS=Yarrowia...  35.4    1.6   
sp|A5D7C1|DDX52_BOVIN Probable ATP-dependent RNA helicase DDX52 O...  35.8    1.6   
sp|Q8JFP1|IF4A2_CHICK Eukaryotic initiation factor 4A-II OS=Gallu...  35.4    1.6   
sp|A1C5V3|DBP3_ASPCL ATP-dependent RNA helicase dbp3 OS=Aspergill...  35.8    1.6   
sp|Q07886|DDX49_DROME Probable ATP-dependent RNA helicase Dbp45A ...  35.8    1.6   
sp|A7TK55|IF4A_VANPO ATP-dependent RNA helicase eIF4A OS=Vanderwa...  35.4    1.6   
sp|O75643|U520_HUMAN U5 small nuclear ribonucleoprotein 200 kDa h...  35.8    1.6   
sp|Q4R4Y9|IF4A2_MACFA Eukaryotic initiation factor 4A-II OS=Macac...  35.4    1.6   
sp|Q5A9Z6|FAL1_CANAL ATP-dependent RNA helicase FAL1 OS=Candida a...  35.4    1.6   
sp|Q1MTR1|IRC3_SCHPO Putative mitochondrial ATP-dependent helicas...  35.8    1.6   
sp|Q5RKI1|IF4A2_RAT Eukaryotic initiation factor 4A-II OS=Rattus ...  35.4    1.7   
sp|Q5R4X1|IF4A2_PONAB Eukaryotic initiation factor 4A-II OS=Pongo...  35.4    1.7   
sp|P10630|IF4A2_MOUSE Eukaryotic initiation factor 4A-II OS=Mus m...  35.4    1.7   
sp|Q14240|IF4A2_HUMAN Eukaryotic initiation factor 4A-II OS=Homo ...  35.4    1.7   
sp|Q3SZ65|IF4A2_BOVIN Eukaryotic initiation factor 4A-II OS=Bos t...  35.4    1.7   
sp|Q6FKN8|DBP5_CANGA ATP-dependent RNA helicase DBP5 OS=Candida g...  35.4    1.7   
sp|A1AZF8|SYGB_PARDP Glycine--tRNA ligase beta subunit OS=Paracoc...  35.8    1.7   
sp|Q4PDT1|DBP3_USTMA ATP-dependent RNA helicase DBP3 OS=Ustilago ...  35.4    1.7   
sp|A7TJM9|DRS1_VANPO ATP-dependent RNA helicase DRS1 OS=Vanderwal...  35.8    1.7   
sp|Q7XJN0|RH17_ARATH DEAD-box ATP-dependent RNA helicase 17 OS=Ar...  35.4    1.8   
sp|Q0SM15|UVRB_BORAP UvrABC system protein B OS=Borreliella afzel...  35.4    1.8   
sp|P15043|RECQ_ECOLI ATP-dependent DNA helicase RecQ OS=Escherich...  35.4    1.8   
sp|B2SUN1|UVRB_XANOP UvrABC system protein B OS=Xanthomonas oryza...  35.4    1.9   
sp|Q2P0Z3|UVRB_XANOM UvrABC system protein B OS=Xanthomonas oryza...  35.4    1.9   
sp|Q12099|FAL1_YEAST ATP-dependent RNA helicase FAL1 OS=Saccharom...  35.4    1.9   
sp|A6ZXY5|FAL1_YEAS7 ATP-dependent RNA helicase FAL1 OS=Saccharom...  35.4    1.9   
sp|B0RRD9|UVRB_XANCB UvrABC system protein B OS=Xanthomonas campe...  35.4    1.9   
sp|A0AKW5|DCUP_LISW6 Uroporphyrinogen decarboxylase OS=Listeria w...  35.0    1.9   
sp|Q890X8|UVRB_CLOTE UvrABC system protein B OS=Clostridium tetan...  35.4    1.9   
sp|Q3IKF4|UVRB_PSET1 UvrABC system protein B OS=Pseudoalteromonas...  35.4    1.9   
sp|Q4R6M5|DDX5_MACFA Probable ATP-dependent RNA helicase DDX5 OS=...  35.4    1.9   
sp|Q5GXX4|UVRB_XANOR UvrABC system protein B OS=Xanthomonas oryza...  35.4    1.9   
sp|Q0CMM8|DBP10_ASPTN ATP-dependent RNA helicase dbp10 OS=Aspergi...  35.4    1.9   
sp|Q8P7X1|UVRB_XANCP UvrABC system protein B OS=Xanthomonas campe...  35.4    1.9   
sp|Q4UW79|UVRB_XANC8 UvrABC system protein B OS=Xanthomonas campe...  35.4    1.9   
sp|Q4IPI1|ROK1_GIBZE ATP-dependent RNA helicase ROK1 OS=Gibberell...  35.4    1.9   
sp|P0C2N7|DRS1_CHAGB ATP-dependent RNA helicase DRS1 OS=Chaetomiu...  35.4    2.0   
sp|Q8PJB1|UVRB_XANAC UvrABC system protein B OS=Xanthomonas axono...  35.4    2.0   
sp|A5E1N2|ROK1_LODEL ATP-dependent RNA helicase ROK1 OS=Lodderomy...  35.4    2.0   
sp|P20449|DBP5_YEAST ATP-dependent RNA helicase DBP5 OS=Saccharom...  35.4    2.0   
sp|A6ZNQ1|DBP5_YEAS7 ATP-dependent RNA helicase DBP5 OS=Saccharom...  35.4    2.0   
sp|Q9PJF4|UVRB_CHLMU UvrABC system protein B OS=Chlamydia muridar...  35.4    2.0   
sp|Q8K301|DDX52_MOUSE Probable ATP-dependent RNA helicase DDX52 O...  35.4    2.1   
sp|Q8RXK6|RH8_ARATH DEAD-box ATP-dependent RNA helicase 8 OS=Arab...  35.4    2.1   
sp|A5DS77|DBP2_LODEL ATP-dependent RNA helicase DBP2 OS=Lodderomy...  35.4    2.1   
sp|Q9FT69|RQSIM_ARATH ATP-dependent DNA helicase Q-like SIM OS=Ar...  35.4    2.2   
sp|Q7S9J4|DBP10_NEUCR ATP-dependent RNA helicase dbp-10 OS=Neuros...  35.4    2.2   
sp|Q9U2G0|U520_CAEEL U5 small nuclear ribonucleoprotein 200 kDa h...  35.4    2.2   
sp|Q86TM3|DDX53_HUMAN Probable ATP-dependent RNA helicase DDX53 O...  35.4    2.2   
sp|Q8KC79|UVRB_CHLTE UvrABC system protein B OS=Chlorobaculum tep...  35.4    2.2   
sp|Q8SRB2|DBP2_ENCCU ATP-dependent RNA helicase DBP2 OS=Encephali...  35.0    2.3   
sp|Q72BN0|UVRB_NITV2 UvrABC system protein B OS=Nitratidesulfovib...  35.4    2.3   
sp|Q6C7X8|DBP10_YARLI ATP-dependent RNA helicase DBP10 OS=Yarrowi...  35.4    2.3   
sp|A1VDN0|UVRB_NITV4 UvrABC system protein B OS=Nitratidesulfovib...  35.4    2.3   
sp|Q99PT0|DDX52_RAT Probable ATP-dependent RNA helicase DDX52 OS=...  35.0    2.4   
sp|Q83NI7|UVRB_TROW8 UvrABC system protein B OS=Tropheryma whippl...  35.0    2.4   
sp|P94846|UVRB_HELPY UvrABC system protein B OS=Helicobacter pylo...  35.0    2.4   
sp|Q6NZQ2|DDX31_MOUSE ATP-dependent DNA helicase DDX31 OS=Mus mus...  35.0    2.5   
sp|Q71XF3|DCUP_LISMF Uroporphyrinogen decarboxylase OS=Listeria m...  35.0    2.5   
sp|Q1CSF2|UVRB_HELPH UvrABC system protein B OS=Helicobacter pylo...  35.0    2.5   
sp|O26066|MFD_HELPY Transcription-repair-coupling factor OS=Helic...  35.4    2.5   
sp|C1KXG7|DCUP_LISMC Uroporphyrinogen decarboxylase OS=Listeria m...  34.7    2.5   
sp|B8G8R1|UVRB_CHLAD UvrABC system protein B OS=Chloroflexus aggr...  35.0    2.5   
sp|C1A4H0|UVRB_GEMAT UvrABC system protein B OS=Gemmatimonas aura...  35.0    2.6   
sp|Q9HPZ2|RAD25_HALSA Putative DNA 3'-5' helicase Rad25 OS=Haloba...  35.0    2.6   
sp|Q9UMR2|DD19B_HUMAN ATP-dependent RNA helicase DDX19B OS=Homo s...  35.0    2.6   
sp|Q73MY7|UVRB_TREDE UvrABC system protein B OS=Treponema dentico...  35.0    2.6   
sp|Q9M2E0|RH12_ARATH DEAD-box ATP-dependent RNA helicase 12 OS=Ar...  35.0    2.7   
sp|Q6BRE4|DBP5_DEBHA ATP-dependent RNA helicase DBP5 OS=Debaryomy...  35.0    2.7   
sp|Q9ZJ57|MFD_HELPJ Transcription-repair-coupling factor OS=Helic...  35.0    2.7   
sp|Q95YF3|CGH1_CAEEL ATP-dependent RNA helicase cgh-1 OS=Caenorha...  35.0    2.7   
sp|Q042E2|UVRB_LACGA UvrABC system protein B OS=Lactobacillus gas...  35.0    2.7   
sp|P41381|IF4A8_TOBAC Eukaryotic initiation factor 4A-8 OS=Nicoti...  34.7    2.7   
sp|Q27268|DX39B_DROME ATP-dependent RNA helicase WM6 OS=Drosophil...  34.7    2.8   
sp|Q9NUU7|DD19A_HUMAN ATP-dependent RNA helicase DDX19A OS=Homo s...  35.0    2.8   
sp|Q61655|DD19A_MOUSE ATP-dependent RNA helicase DDX19A OS=Mus mu...  34.7    2.9   
sp|P24125|V51K_BPL79 51.5 kDa protein OS=Lactococcus phage (isola...  34.7    2.9   
sp|Q887N8|RHLB_PSESM ATP-dependent RNA helicase RhlB OS=Pseudomon...  34.7    2.9   
sp|A2QAX7|DRS1_ASPNC ATP-dependent RNA helicase drs1 OS=Aspergill...  35.0    2.9   
sp|A7TGU7|DHH1_VANPO ATP-dependent RNA helicase DHH1 OS=Vanderwal...  34.7    2.9   
sp|O01836|GLH3_CAEEL ATP-dependent RNA helicase glh-3 OS=Caenorha...  35.0    3.0   
sp|Q6FU81|MS116_CANGA ATP-dependent RNA helicase MSS116, mitochon...  35.0    3.0   
sp|A1SAL1|RHLB_SHEAM ATP-dependent RNA helicase RhlB OS=Shewanell...  34.7    3.0   
sp|A3BT52|RH29_ORYSJ DEAD-box ATP-dependent RNA helicase 29 OS=Or...  35.0    3.0   
sp|A7TGW7|DBP10_VANPO ATP-dependent RNA helicase DBP10 OS=Vanderw...  35.0    3.1   
sp|Q6FNA2|DBP10_CANGA ATP-dependent RNA helicase DBP10 OS=Candida...  35.0    3.1   
sp|Q9Z7A5|UVRB_CHLPN UvrABC system protein B OS=Chlamydia pneumon...  34.7    3.1   
sp|Q17YL7|UVRB_HELAH UvrABC system protein B OS=Helicobacter acin...  34.7    3.1   
sp|Q5BCI0|MAK5_EMENI ATP-dependent RNA helicase mak5 OS=Emericell...  35.0    3.1   
sp|Q747K3|UVRB_GEOSL UvrABC system protein B OS=Geobacter sulfurr...  34.7    3.1   
sp|A1BI09|UVRB_CHLPD UvrABC system protein B OS=Chlorobium phaeob...  34.7    3.2   
sp|Q3ZBV2|DD19A_BOVIN ATP-dependent RNA helicase DDX19A OS=Bos ta...  34.7    3.2   
sp|Q40469|IF4A6_TOBAC Eukaryotic initiation factor 4A-6 (Fragment...  34.3    3.2   
sp|Q2UST1|MS116_ASPOR ATP-dependent RNA helicase mss116, mitochon...  34.7    3.2   
sp|A2YV85|RH29_ORYSI DEAD-box ATP-dependent RNA helicase 29 OS=Or...  35.0    3.2   
sp|A5DL80|DBP2_PICGU ATP-dependent RNA helicase DBP2 OS=Meyerozym...  34.7    3.2   
sp|A5DZX2|DBP5_LODEL ATP-dependent RNA helicase DBP5 OS=Lodderomy...  34.7    3.3   
sp|Q8L4E9|RH36_ORYSJ DEAD-box ATP-dependent RNA helicase 36 OS=Or...  34.7    3.3   
sp|Q9ZKA0|UVRB_HELPJ UvrABC system protein B OS=Helicobacter pylo...  34.7    3.3   
sp|Q94BV4|RH6_ARATH DEAD-box ATP-dependent RNA helicase 6 OS=Arab...  34.7    3.3   
sp|Q54BD6|DDX51_DICDI Probable ATP-dependent RNA helicase ddx51 O...  34.7    3.3   
sp|B4GEU5|SPNE_DROPE Probable ATP-dependent RNA helicase spindle-...  35.0    3.3   
sp|Q6CWQ5|MRH4_KLULA ATP-dependent RNA helicase MRH4, mitochondri...  34.7    3.4   
sp|O34750|YFML_BACSU Probable ATP-dependent RNA helicase YfmL OS=...  34.3    3.4   
sp|P40724|RECQ_SALTY ATP-dependent DNA helicase RecQ OS=Salmonell...  34.7    3.4   
sp|Q9VVK8|DDX52_DROME Probable ATP-dependent RNA helicase DDX52 O...  34.7    3.5   
sp|A9WT85|UVRB_RENSM UvrABC system protein B OS=Renibacterium sal...  34.7    3.6   
sp|Q2UMH8|DBP3_ASPOR ATP-dependent RNA helicase dbp3 OS=Aspergill...  34.7    3.6   
sp|Q829Y6|UVRB_STRAW UvrABC system protein B OS=Streptomyces aver...  34.7    3.7   
sp|A5DB98|IF4A_PICGU ATP-dependent RNA helicase eIF4A OS=Meyerozy...  34.3    3.7   
sp|B2S264|UVRB_TREPS UvrABC system protein B OS=Treponema pallidu...  34.7    3.7   
sp|O83154|UVRB_TREPA UvrABC system protein B OS=Treponema pallidu...  34.7    3.7   
sp|Q929G1|DCUP_LISIN Uroporphyrinogen decarboxylase OS=Listeria i...  34.3    3.7   
sp|Q1RI82|MFD_RICBR Transcription-repair-coupling factor OS=Ricke...  34.7    3.8   
sp|Q30ZK3|UVRB_OLEA2 UvrABC system protein B OS=Oleidesulfovibrio...  34.7    3.8   
sp|Q81DF9|CSHE_BACCR DEAD-box ATP-dependent RNA helicase CshE OS=...  34.3    3.9   
sp|P0CQ94|DBP7_CRYNJ ATP-dependent RNA helicase DBP7 OS=Cryptococ...  34.7    3.9   
sp|P0CQ95|DBP7_CRYNB ATP-dependent RNA helicase DBP7 OS=Cryptococ...  34.7    3.9   
sp|Q8CK11|UVRB_STRCO UvrABC system protein B OS=Streptomyces coel...  34.7    3.9   
sp|Q03AL7|UVRB_LACP3 UvrABC system protein B OS=Lacticaseibacillu...  34.7    4.0   
sp|B3WCQ5|UVRB_LACCB UvrABC system protein B OS=Lacticaseibacillu...  34.7    4.0   
sp|Q74K90|UVRB_LACJO UvrABC system protein B OS=Lactobacillus joh...  34.3    4.1   
sp|A3LQW7|DBP2_PICST ATP-dependent RNA helicase DBP2 OS=Scheffers...  34.3    4.1   
sp|O76743|GLH4_CAEEL ATP-dependent RNA helicase glh-4 OS=Caenorha...  34.7    4.2   
sp|Q757U8|DBP10_EREGS ATP-dependent RNA helicase DBP10 OS=Eremoth...  34.7    4.3   
sp|A7TEF4|FAL1_VANPO ATP-dependent RNA helicase FAL1 OS=Vanderwal...  34.3    4.3   
sp|B8DF98|DCUP_LISMH Uroporphyrinogen decarboxylase OS=Listeria m...  33.9    4.4   
sp|A1CTL8|MAK5_ASPCL ATP-dependent RNA helicase mak5 OS=Aspergill...  34.3    4.4   
sp|P10081|IF4A_YEAST ATP-dependent RNA helicase eIF4A OS=Saccharo...  34.3    4.5   
sp|A6ZQJ1|IF4A_YEAS7 ATP-dependent RNA helicase eIF4A OS=Saccharo...  34.3    4.5   
sp|Q6FY67|MAK5_CANGA ATP-dependent RNA helicase MAK5 OS=Candida g...  34.3    4.5   
sp|Q0E2Q3|IF4A2_ORYSJ Putative eukaryotic initiation factor 4A-2 ...  34.3    4.5   
sp|Q9VUV9|U520_DROME U5 small nuclear ribonucleoprotein 200 kDa h...  34.7    4.6   
sp|Q12389|DBP10_YEAST ATP-dependent RNA helicase DBP10 OS=Sacchar...  34.3    4.6   
sp|A6ZXU0|DBP10_YEAS7 ATP-dependent RNA helicase DBP10 OS=Sacchar...  34.3    4.6   
sp|Q3Z9B4|UVRB_DEHM1 UvrABC system protein B OS=Dehalococcoides m...  34.3    4.7   
sp|P9WFC7|UVRB_MYCTU UvrABC system protein B OS=Mycobacterium tub...  34.3    4.8   
sp|P9WFC6|UVRB_MYCTO UvrABC system protein B OS=Mycobacterium tub...  34.3    4.8   
sp|P67423|UVRB_MYCBO UvrABC system protein B OS=Mycobacterium bov...  34.3    4.8   
sp|Q3ZZK7|UVRB_DEHMC UvrABC system protein B OS=Dehalococcoides m...  34.3    4.8   
sp|Q4WWD3|DHH1_ASPFU ATP-dependent RNA helicase dhh1 OS=Aspergill...  34.3    4.8   
sp|A5E2I8|SPB4_LODEL ATP-dependent rRNA helicase SPB4 OS=Lodderom...  34.3    4.8   
sp|Q0CBE1|DHH1_ASPTN ATP-dependent RNA helicase dhh1 OS=Aspergill...  34.3    4.8   
sp|Q6CSZ7|DHH1_KLULA ATP-dependent RNA helicase DHH1 OS=Kluyverom...  34.3    4.9   
sp|Q109G2|RH12_ORYSJ DEAD-box ATP-dependent RNA helicase 12 OS=Or...  34.3    5.0   
sp|Q9FNQ1|DEXHE_ARATH DExH-box ATP-dependent RNA helicase DExH14 ...  34.3    5.0   
sp|A1D8G1|DHH1_NEOFI ATP-dependent RNA helicase dhh1 OS=Neosartor...  33.9    5.0   
sp|Q6CDS6|ROK1_YARLI ATP-dependent RNA helicase ROK1 OS=Yarrowia ...  34.3    5.0   
sp|P34668|YO12_CAEEL Putative ATP-dependent RNA helicase ZK686.2 ...  33.9    5.2   
sp|A2QY39|DHH1_ASPNC ATP-dependent RNA helicase dhh1 OS=Aspergill...  33.9    5.2   
sp|Q6CXT4|IF4A_KLULA ATP-dependent RNA helicase eIF4A OS=Kluyvero...  33.9    5.2   
sp|Q2GQ93|DHH1_CHAGB ATP-dependent RNA helicase DHH1 OS=Chaetomiu...  33.9    5.2   
sp|A1CJ18|DHH1_ASPCL ATP-dependent RNA helicase dhh1 OS=Aspergill...  33.9    5.3   
sp|Q0U7S9|DHH1_PHANO ATP-dependent RNA helicase DHH1 OS=Phaeospha...  33.9    5.4   
sp|Q1E306|ROK1_COCIM ATP-dependent RNA helicase ROK1 OS=Coccidioi...  33.9    5.5   
sp|Q6FL17|SUB2_CANGA ATP-dependent RNA helicase SUB2 OS=Candida g...  33.9    5.5   
sp|Q6BJX6|DHH1_DEBHA ATP-dependent RNA helicase DHH1 OS=Debaryomy...  33.9    5.6   
sp|Q9SYP1|DEXHC_ARATH DExH-box ATP-dependent RNA helicase DExH12 ...  34.3    5.6   
sp|A5DBI5|DBP5_PICGU ATP-dependent RNA helicase DBP5 OS=Meyerozym...  33.9    5.6   
sp|A6R9U4|MAK5_AJECN ATP-dependent RNA helicase MAK5 OS=Ajellomyc...  33.9    5.8   
sp|Q2HEB0|PRP28_CHAGB Pre-mRNA-splicing ATP-dependent RNA helicas...  33.9    5.8   
sp|Q0E2Z7|RH41_ORYSJ DEAD-box ATP-dependent RNA helicase 41 OS=Or...  33.9    6.0   
sp|Q5L4S6|UVRB_CHLAB UvrABC system protein B OS=Chlamydia abortus...  33.9    6.1   
sp|Q7L2E3|DHX30_HUMAN ATP-dependent RNA helicase DHX30 OS=Homo sa...  33.9    6.1   
sp|Q5ZHZ0|DX39B_CHICK Spliceosome RNA helicase DDX39B OS=Gallus g...  33.9    6.1   
sp|Q63413|DX39B_RAT Spliceosome RNA helicase Ddx39b OS=Rattus nor...  33.5    6.3   
sp|Q9Z1N5|DX39B_MOUSE Spliceosome RNA helicase Ddx39b OS=Mus musc...  33.5    6.3   
sp|A3LZT3|DBP10_PICST ATP-dependent RNA helicase DBP10 OS=Scheffe...  33.9    6.4   
sp|Q3T147|DX39B_BOVIN Spliceosome RNA helicase DDX39B OS=Bos taur...  33.5    6.4   
sp|Q09747|DBP5_SCHPO ATP-dependent RNA helicase dbp5 OS=Schizosac...  33.9    6.4   
sp|Q6MS38|UVRB_MYCMS UvrABC system protein B OS=Mycoplasma mycoid...  33.9    6.5   
sp|O80902|CIPKM_ARATH CBL-interacting serine/threonine-protein ki...  33.5    6.5   
sp|A6R3R5|IF4A_AJECN ATP-dependent RNA helicase eIF4A OS=Ajellomy...  33.5    6.5   
sp|Q5RE47|DX39B_PONAB Spliceosome RNA helicase DDX39B OS=Pongo ab...  33.5    6.6   
sp|Q29024|DX39B_PIG Spliceosome RNA helicase DDX39B OS=Sus scrofa...  33.5    6.6   
sp|P60024|DX39B_PANTR Spliceosome RNA helicase DDX39B OS=Pan trog...  33.5    6.6   
sp|Q5TM17|DX39B_MACMU Spliceosome RNA helicase DDX39B OS=Macaca m...  33.5    6.6   
sp|Q13838|DX39B_HUMAN Spliceosome RNA helicase DDX39B OS=Homo sap...  33.5    6.6   
sp|Q7N8V1|RAPA_PHOLL RNA polymerase-associated protein RapA OS=Ph...  33.9    6.6   
sp|Q2NKY8|DHX30_BOVIN ATP-dependent RNA helicase DHX30 OS=Bos tau...  33.9    6.6   
sp|Q5WR10|DX39B_CANLF Spliceosome RNA helicase DDX39B OS=Canis lu...  33.5    6.7   
sp|Q5AJD0|DBP5_CANAL ATP-dependent RNA helicase DBP5 OS=Candida a...  33.5    6.7   
sp|A4R715|DHH1_PYRO7 ATP-dependent RNA helicase DHH1 OS=Pyricular...  33.5    6.8   
sp|A5DIX5|ROK1_PICGU ATP-dependent RNA helicase ROK1 OS=Meyerozym...  33.5    6.8   
sp|Q18212|DX39B_CAEEL Spliceosome RNA helicase DDX39B homolog OS=...  33.5    6.8   
sp|Q0DBS1|RH51_ORYSJ Putative DEAD-box ATP-dependent RNA helicase...  33.5    6.8   
sp|Q89RY1|AROC_BRADU Chorismate synthase OS=Bradyrhizobium diazoe...  33.5    6.9   
sp|Q6BME5|SUB2_DEBHA ATP-dependent RNA helicase SUB2 OS=Debaryomy...  33.5    6.9   
sp|P0CQ70|IF4A_CRYNJ ATP-dependent RNA helicase eIF4A OS=Cryptoco...  33.5    7.0   
sp|P0CQ71|IF4A_CRYNB ATP-dependent RNA helicase eIF4A OS=Cryptoco...  33.5    7.0   
sp|Q75AE1|ROK1_EREGS ATP-dependent RNA helicase ROK1 OS=Eremothec...  33.5    7.0   
sp|A5DIP0|DHH1_PICGU ATP-dependent RNA helicase DHH1 OS=Meyerozym...  33.5    7.1   
sp|Q0UU86|IF4A_PHANO ATP-dependent RNA helicase eIF4A OS=Phaeosph...  33.5    7.3   
sp|A5DWJ1|FAL1_LODEL ATP-dependent RNA helicase FAL1 OS=Lodderomy...  33.5    7.3   
sp|Q4HW67|DHH1_GIBZE ATP-dependent RNA helicase DHH1 OS=Gibberell...  33.5    7.3   
sp|Q2U5A2|DHH1_ASPOR ATP-dependent RNA helicase dhh1 OS=Aspergill...  33.5    7.4   
sp|Q2HCV7|ROK1_CHAGB ATP-dependent RNA helicase ROK1 OS=Chaetomiu...  33.5    7.5   
sp|P35683|IF4A1_ORYSJ Eukaryotic initiation factor 4A-1 OS=Oryza ...  33.5    7.7   
sp|O48534|DEXHD_ARATH DExH-box ATP-dependent RNA helicase DExH13 ...  33.9    7.8   
sp|P0CQ96|SUB2_CRYNJ ATP-dependent RNA helicase SUB2 OS=Cryptococ...  33.5    8.0   
sp|P0CQ97|SUB2_CRYNB ATP-dependent RNA helicase SUB2 OS=Cryptococ...  33.5    8.0   
sp|A3GH91|DBP5_PICST ATP-dependent RNA helicase DBP5 OS=Scheffers...  33.5    8.0   
sp|Q975X3|CDC61_SULTO ORC1-type DNA replication protein 1 OS=Sulf...  33.1    8.0   
sp|A3GFI4|IF4A_PICST ATP-dependent RNA helicase eIF4A OS=Scheffer...  33.1    8.1   
sp|Q1DQ20|IF4A_COCIM ATP-dependent RNA helicase eIF4A OS=Coccidio...  33.1    8.1   
sp|F4ZCI3|NNHA_MYCS0 2-nitroimidazole nitrohydrolase OS=Mycobacte...  33.1    8.2   
sp|Q0CXD0|IF4A_ASPTN ATP-dependent RNA helicase eIF4A OS=Aspergil...  33.1    8.2   
sp|Q7XMK8|RH6_ORYSJ DEAD-box ATP-dependent RNA helicase 6 OS=Oryz...  33.5    8.3   
sp|Q8SQM5|IF4A_ENCCU ATP-dependent RNA helicase eIF4A OS=Encephal...  33.1    8.4   
sp|A1CJT5|IF4A_ASPCL ATP-dependent RNA helicase eIF4A OS=Aspergil...  33.1    8.4   
sp|Q0UWC8|PRP28_PHANO Pre-mRNA-splicing ATP-dependent RNA helicas...  33.5    8.5   
sp|Q1RKN3|TLH2_SCHPO ATP-dependent DNA helicase tlh2 OS=Schizosac...  33.5    8.7   
sp|Q6H7S2|RH8_ORYSJ DEAD-box ATP-dependent RNA helicase 8 OS=Oryz...  33.1    8.7   
sp|P0CT33|TLH1_SCHPO ATP-dependent DNA helicase tlh1 (Fragment) O...  33.5    8.7   
sp|Q4IBS2|MAK5_GIBZE ATP-dependent RNA helicase MAK5 OS=Gibberell...  33.5    8.8   
sp|Q91VR5|DDX1_MOUSE ATP-dependent RNA helicase DDX1 OS=Mus muscu...  33.5    8.9   
sp|A5DUB2|MAK5_LODEL ATP-dependent RNA helicase MAK5 OS=Lodderomy...  33.5    8.9   
sp|B8DJT9|UVRB_NITV9 UvrABC system protein B OS=Nitratidesulfovib...  33.5    9.0   
sp|Q818H2|CSHB_BACCR DEAD-box ATP-dependent RNA helicase CshB OS=...  33.1    9.0   
sp|Q03099|YMN3_YEAST Y' element ATP-dependent helicase YML133C OS...  33.5    9.2   
sp|Q99208|YL066_YEAST Y' element ATP-dependent helicase YLL066C O...  33.5    9.2   
sp|Q6BY27|DBP2_DEBHA ATP-dependent RNA helicase DBP2 OS=Debaryomy...  33.1    9.3   
sp|A6RY31|DHH1_BOTFB ATP-dependent RNA helicase dhh1 OS=Botryotin...  33.1    9.3   
sp|Q6NHI3|UVRB_CORDI UvrABC system protein B OS=Corynebacterium d...  33.1    9.6   
sp|Q641Y8|DDX1_RAT ATP-dependent RNA helicase DDX1 OS=Rattus norv...  33.1    9.7   
sp|Q07888|YL067_YEAST Y' element ATP-dependent helicase YLL067C O...  33.5    9.8   
sp|O13559|YRF14_YEAST Y' element ATP-dependent helicase protein 1...  33.5    9.8   
sp|P43538|YFG6_YEAST Y' element ATP-dependent helicase YFL066C OS...  33.1    9.8   
sp|Q66HG7|DDX59_RAT Probable ATP-dependent RNA helicase DDX59 OS=...  33.1    10.0  
sp|A7TT88|ROK1_VANPO ATP-dependent RNA helicase ROK1 OS=Vanderwal...  33.1    10.0  


>sp|Q96C10|DHX58_HUMAN ATP-dependent RNA helicase DHX58 OS=Homo 
sapiens OX=9606 GN=DHX58 PE=1 SV=1
Length=678

 Score = 1410 bits (3649),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 678/678 (100%), Positives = 678/678 (100%), Gaps = 0/678 (0%)

Query  1    MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV  60
            MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV
Sbjct  1    MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV  60

Query  61   TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
            TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV
Sbjct  61   TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120

Query  121  ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG  180
            ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG
Sbjct  121  ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG  180

Query  181  AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI  240
            AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI
Sbjct  181  AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI  240

Query  241  HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV  300
            HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV
Sbjct  241  HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV  300

Query  301  DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQR  360
            DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQR
Sbjct  301  DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQR  360

Query  361  QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ  420
            QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ
Sbjct  361  QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ  420

Query  421  QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYA  480
            QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYA
Sbjct  421  QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYA  480

Query  481  FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR  540
            FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR
Sbjct  481  FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR  540

Query  541  ENQRQQFPVEHVQLLCINCMVAVGHGSDLRKVEGTHHVNVNPNFSNYYNVSRDPVVINKV  600
            ENQRQQFPVEHVQLLCINCMVAVGHGSDLRKVEGTHHVNVNPNFSNYYNVSRDPVVINKV
Sbjct  541  ENQRQQFPVEHVQLLCINCMVAVGHGSDLRKVEGTHHVNVNPNFSNYYNVSRDPVVINKV  600

Query  601  FKDWKPGGVISCRNCGEVWGLQMIYKSVKLPVLKVRSMLLETPQGRIQAKKWSRVPFSVP  660
            FKDWKPGGVISCRNCGEVWGLQMIYKSVKLPVLKVRSMLLETPQGRIQAKKWSRVPFSVP
Sbjct  601  FKDWKPGGVISCRNCGEVWGLQMIYKSVKLPVLKVRSMLLETPQGRIQAKKWSRVPFSVP  660

Query  661  DFDFLQHCAENLSDLSLD  678
            DFDFLQHCAENLSDLSLD
Sbjct  661  DFDFLQHCAENLSDLSLD  678


>sp|Q99J87|DHX58_MOUSE ATP-dependent RNA helicase DHX58 OS=Mus 
musculus OX=10090 GN=Dhx58 PE=1 SV=2
Length=678

 Score = 1103 bits (2853),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 533/678 (79%), Positives = 593/678 (87%), Gaps = 0/678 (0%)

Query  1    MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV  60
            MELR YQWEVI+PALEGKNIIIWLPTGAGKTRAAA+VAKRHLETVD  KVVVLVNRVHLV
Sbjct  1    MELRPYQWEVILPALEGKNIIIWLPTGAGKTRAAAFVAKRHLETVDRGKVVVLVNRVHLV  60

Query  61   TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
            +QH EEFRRMLD  WTVTTLSGDMG RAGFG +AR HDLLICTAELLQ+AL S EE+EHV
Sbjct  61   SQHAEEFRRMLDKHWTVTTLSGDMGSRAGFGLMARSHDLLICTAELLQLALNSSEEDEHV  120

Query  121  ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG  180
            EL  FSLIVVDECHHTHKDTVYN I+S+YLE KL++A+PLPQVLGLTASPGTGGA+KL G
Sbjct  121  ELREFSLIVVDECHHTHKDTVYNTILSRYLEQKLKKAEPLPQVLGLTASPGTGGATKLQG  180

Query  181  AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI  240
            AI+H+LQLCANLDT  IMSP+NC  QL  H+ +PCKQY+LC RR+QDPFGDL+KKLM+QI
Sbjct  181  AIDHILQLCANLDTCHIMSPKNCYSQLLMHNPKPCKQYDLCQRRAQDPFGDLIKKLMNQI  240

Query  241  HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV  300
            H  LEMP+L ++FGTQMYEQQVV+L + AA AGLQEQRVYALHLRRYNDAL IHDTVRA 
Sbjct  241  HQQLEMPDLKQQFGTQMYEQQVVQLCKDAAEAGLQEQRVYALHLRRYNDALFIHDTVRAR  300

Query  301  DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQR  360
            DAL  LQDFY RE  TKTQ++ AE  LL LFDD KN L  LA  GPENPKLEMLE+IL +
Sbjct  301  DALDMLQDFYDRERTTKTQMVRAESWLLKLFDDHKNVLGQLAARGPENPKLEMLERILLK  360

Query  361  QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ  420
            QF S    RGIIFTRTRQ+A SLLLWL+QQ  LQTV I+ Q+LIGAGN+SQSTHMTQ+DQ
Sbjct  361  QFGSPGHTRGIIFTRTRQTASSLLLWLRQQPCLQTVGIKPQMLIGAGNTSQSTHMTQKDQ  420

Query  421  QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYA  480
            QEVIQ+F+DG L+LLVATSVAEEGLDI  CNVVVRYGLLTNEISMVQARGRARA QSVY+
Sbjct  421  QEVIQEFRDGILSLLVATSVAEEGLDIAQCNVVVRYGLLTNEISMVQARGRARAGQSVYS  480

Query  481  FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR  540
            F+ATEGSRE+KREL NEALE LME+AVAAVQKMD  E++AKIRDLQQA+L KRAA+AA R
Sbjct  481  FLATEGSREMKRELTNEALEVLMEKAVAAVQKMDPDEFKAKIRDLQQASLVKRAARAAHR  540

Query  541  ENQRQQFPVEHVQLLCINCMVAVGHGSDLRKVEGTHHVNVNPNFSNYYNVSRDPVVINKV  600
            E Q+ QF  EHVQLLCINCMVAVG+GSDLRKVEGTHHVNVNPNFS YY  S++PVVINKV
Sbjct  541  EIQQGQFLPEHVQLLCINCMVAVGYGSDLRKVEGTHHVNVNPNFSVYYTTSQNPVVINKV  600

Query  601  FKDWKPGGVISCRNCGEVWGLQMIYKSVKLPVLKVRSMLLETPQGRIQAKKWSRVPFSVP  660
            FKDW+PGG I C NCGEVWG QMIYKSV LPVLK+ S+LLETP+G+IQAKKWSRVPFS+P
Sbjct  601  FKDWRPGGTIRCSNCGEVWGFQMIYKSVTLPVLKIGSILLETPRGKIQAKKWSRVPFSIP  660

Query  661  DFDFLQHCAENLSDLSLD  678
             FD LQ C ++LS+LSLD
Sbjct  661  VFDILQDCTQSLSELSLD  678


>sp|Q9BYX4|IFIH1_HUMAN Interferon-induced helicase C domain-containing 
protein 1 OS=Homo sapiens OX=9606 GN=IFIH1 PE=1 SV=3
Length=1025

 Score = 528 bits (1361),  Expect = 8e-175, Method: Compositional matrix adjust.
 Identities = 293/717 (41%), Positives = 428/717 (60%), Gaps = 52/717 (7%)

Query  1     MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA----KVVVLVNR  56
             ++LR YQ EV  PALEGKNIII LPTG+GKTR A Y+AK HL+    A    KV+VLVN+
Sbjct  306   LQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNK  365

Query  57    VHLVTQ-HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE  115
             V LV Q   +EF+  L   + V  LSGD   +  F  + +  D++I TA++L+ +L + E
Sbjct  366   VLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLE  425

Query  116   --EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQ---------PLPQVL  164
               E+  V+L+ FSLI++DECHHT+K+ VYN IM  YL  KL+  +         PLPQ+L
Sbjct  426   NGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQIL  485

Query  165   GLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRR  224
             GLTASPG GGA+K   A  H+L+LCANLD + I + +    QL+   Q+PCK++ +    
Sbjct  486   GLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIADAT  545

Query  225   SQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHL  284
              +DPF + L ++M +I  + +M  +S  FGTQ YEQ  +++ + AA  G +++RV A HL
Sbjct  546   REDPFKEKLLEIMTRIQTYCQMSPMS-DFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHL  604

Query  285   RRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQIL------------C----------  322
             R+YN+AL I+DT+R +DA   L+ FY+ E   K  ++            C          
Sbjct  605   RKYNEALQINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDSDEGGDDEYCDGDEDEDDLK  664

Query  323   -------AERRLLALFDDRKNELAHLATHGP-ENPKLEMLEKILQRQFS-SSNSPRGIIF  373
                     +R L+ LF +    L  LA +   EN KL  L   +  Q++ +  S RGIIF
Sbjct  665   KPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARGIIF  724

Query  374   TRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN  433
             T+TRQSA++L  W+ + +    V ++A  LIGAG+SS+   MTQ +Q+EVI KF+ G +N
Sbjct  725   TKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKIN  784

Query  434   LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFVATEGSRELKRE  493
             LL+AT+VAEEGLDI  CN+V+RYGL+TNEI+MVQARGRARAD+S Y  VA  GS  ++ E
Sbjct  785   LLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADESTYVLVAHSGSGVIEHE  844

Query  494   LINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQ  553
              +N+  E +M +A+  VQ M   EY  KI +LQ  ++ ++  +  +   +  +     + 
Sbjct  845   TVNDFREKMMYKAIHCVQNMKPEEYAHKILELQMQSIMEKKMKTKRNIAKHYKNNPSLIT  904

Query  554   LLCINCMVAVGHGSDLRKVEGTHHVNVNPNFSNYYNVSRDPVVINKVFKDWKPGGVISCR  613
              LC NC V    G D+  +E  HHVN+ P F   Y + R+   + K   D++  G I C+
Sbjct  905   FLCKNCSVLACSGEDIHVIEKMHHVNMTPEFKELY-IVRENKALQKKCADYQINGEIICK  963

Query  614   NCGEVWGLQMIYKSVKLPVLKVRS--MLLETPQGRIQAKKWSRVPFSVPDFDFLQHC  668
              CG+ WG  M++K + LP LK+R+  ++ +    + Q KKW  +P + P+ D+ + C
Sbjct  964   -CGQAWGTMMVHKGLDLPCLKIRNFVVVFKNNSTKKQYKKWVELPITFPNLDYSECC  1019


>sp|Q8R5F7|IFIH1_MOUSE Interferon-induced helicase C domain-containing 
protein 1 OS=Mus musculus OX=10090 GN=Ifih1 PE=1 SV=1
Length=1025

 Score = 522 bits (1344),  Expect = 3e-172, Method: Compositional matrix adjust.
 Identities = 293/717 (41%), Positives = 423/717 (59%), Gaps = 53/717 (7%)

Query  1     MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLE----TVDGAKVVVLVNR  56
             ++LR YQ EV  PAL+GKNIII LPTG+GKTR A Y+ K HL+      +  KV+VLVN+
Sbjct  307   LQLRPYQMEVAQPALDGKNIIICLPTGSGKTRVAVYITKDHLDKKKQASESGKVIVLVNK  366

Query  57    VHLVTQ-HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE  115
             V L  Q   +EF   L   + +  LSGD   +  F  + + +D++I TA++L+ +L + E
Sbjct  367   VMLAEQLFRKEFNPYLKKWYRIIGLSGDTQLKISFPEVVKSYDVIISTAQILENSLLNLE  426

Query  116   --EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQR---------AQPLPQVL  164
               +++ V+L+ FSLI++DECHHT+K+ VYN IM +YL+ KL+          A PLPQ+L
Sbjct  427   SGDDDGVQLSDFSLIIIDECHHTNKEAVYNNIMRRYLKQKLRNNDLKKQNKPAIPLPQIL  486

Query  165   GLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRR  224
             GLTASPG G A K   A  H+L +CANLD + I + +    QL+   ++PCK++ +    
Sbjct  487   GLTASPGVGAAKKQSEAEKHILNICANLDAFTIKTVKENLGQLKHQIKEPCKKFVIADDT  546

Query  225   SQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHL  284
              ++PF + L ++M  I  + +   +S  FGTQ YEQ  +++ + AA  G ++ RV A HL
Sbjct  547   RENPFKEKLLEIMASIQTYCQKSPMS-DFGTQHYEQWAIQMEKKAAKDGNRKDRVCAEHL  605

Query  285   RRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQIL------------C----------  322
             R+YN+AL I+DT+R +DA + L+ FY  E   K  +L            C          
Sbjct  606   RKYNEALQINDTIRMIDAYSHLETFYTDEKEKKFAVLNDSDKSDDEASSCNDQLKGDVKK  665

Query  323   ------AERRLLALFDDRKNELAHLATHGP-ENPKLEMLEKILQRQFS-SSNSPRGIIFT  374
                    +  L+ LF D K  L  LA +   EN KL  L   +  QF+ S  S RGIIFT
Sbjct  666   SLKLDETDEFLMNLFFDNKKMLKKLAENPKYENEKLIKLRNTILEQFTRSEESSRGIIFT  725

Query  375   RTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNL  434
             +TRQS ++L  W+ +      V ++A  LIGAG+SS+   MTQ +Q+EVI KF+ G +NL
Sbjct  726   KTRQSTYALSQWIMENAKFAEVGVKAHHLIGAGHSSEVKPMTQTEQKEVISKFRTGEINL  785

Query  435   LVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFVATEGSRELKREL  494
             L+AT+VAEEGLDI  CN+V+RYGL+TNEI+MVQARGRARAD+S Y  V + GS   +RE+
Sbjct  786   LIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADESTYVLVTSSGSGVTEREI  845

Query  495   INEALETLMEQAVAAVQKMDQAEYQAKIRDLQ-QAALTKRAAQAAQRENQRQQFPVEHVQ  553
             +N+  E +M +A+  VQ M   EY  KI +LQ Q+ L K+         Q    P   + 
Sbjct  846   VNDFREKMMYKAINRVQNMKPEEYAHKILELQVQSILEKKMKVKRSIAKQYNDNP-SLIT  904

Query  554   LLCINCMVAVGHGSDLRKVEGTHHVNVNPNFSNYYNVSRDPVVINKVFKDWKPGGVISCR  613
             LLC NC + V  G ++  +E  HHVN+ P F   Y + R+   + K F D++  G I C+
Sbjct  905   LLCKNCSMLVCSGENIHVIEKMHHVNMTPEFKGLY-IVRENKALQKKFADYQTNGEIICK  963

Query  614   NCGEVWGLQMIYKSVKLPVLKVRSMLLETPQG--RIQAKKWSRVPFSVPDFDFLQHC  668
              CG+ WG  M++K + LP LK+R+ ++       + Q KKW  +P   PD D+ ++C
Sbjct  964   -CGQAWGTMMVHKGLDLPCLKIRNFVVNFKNNSPKKQYKKWVELPIRFPDLDYSEYC  1019


>sp|O95786|RIGI_HUMAN Antiviral innate immune response receptor 
RIG-I OS=Homo sapiens OX=9606 GN=RIGI PE=1 SV=2
Length=925

 Score = 317 bits (813),  Expect = 3e-95, Method: Compositional matrix adjust.
 Identities = 224/696 (32%), Positives = 363/696 (52%), Gaps = 56/696 (8%)

Query  4    RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETV---DGAKVVVLVNRVHLV  60
            R+YQ E+ +PA++GKN II  PTG GKT  +  + + HL+        KVV   N++ + 
Sbjct  244  RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVY  303

Query  61   TQHGEEFRRMLDGR-WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMAL---TSPEE  116
             Q    F +  +   + VT +SG          +   +D++I T ++L   L   T P  
Sbjct  304  EQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPS-  362

Query  117  EEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQ-PLPQVLGLTASPGTGGA  175
                 L++F+L++ DECH+T K   YN+IM  YL+ KL  +  PLPQV+GLTAS G G A
Sbjct  363  -----LSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDA  417

Query  176  SKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKK  235
               D A++++ +LCA+LD   I + ++   +L++   +P K +     R  D F  ++ +
Sbjct  418  KNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQ  477

Query  236  LM-------DQIHDHLE-MPEL-SRKFGTQMYEQQVVKLSEAAALAGL----QEQRV---  279
            LM        +I   LE + ++ +R+FGTQ YEQ +V + +A  +  +    +E R+   
Sbjct  478  LMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKA  537

Query  280  ---YALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKN  336
               Y  HLR+YNDAL+I +  R  DAL  L+DF+   +V        E+ L   F+++  
Sbjct  538  LFLYTSHLRKYNDALIISEHARMKDALDYLKDFFS--NVRAAGFDEIEQDLTQRFEEKLQ  595

Query  337  ELAHLATH-GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQT  395
            EL  ++     ENPKLE L  ILQ ++  +     I+F +TR    +L  W++    L  
Sbjct  596  ELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSF  655

Query  396  VDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ-DGTLNLLVATSVAEEGLDIPHCNVVV  454
              ++  +L G G ++Q+T MT   Q+ ++  F+  G  N+L+ATSVA+EG+DI  CN+V+
Sbjct  656  --LKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVI  713

Query  455  RYGLLTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMD  514
             Y  + N I M+Q RGR RA  S   F+ T  +  +++E IN   E +M  ++  +Q  D
Sbjct  714  LYEYVGNVIKMIQTRGRGRARGS-KCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWD  772

Query  515  QAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPV---EHVQLLCINCMVAVGHGSDLRK  571
            +A ++ KI  +Q         +   R++Q +  PV   E+ +LLC  C     + +D+R 
Sbjct  773  EAVFREKILHIQ-------THEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRV  825

Query  572  VEGTHHVNVNPNFSNYYNVSRDPVVINKVFKDWKPGGVISC--RNCGEVWGLQMIYKSVK  629
            +E  H+  +   F   + VSR P    K F  ++    I C  +NC   WG+ + YK+ +
Sbjct  826  IEECHYTVLGDAFKECF-VSR-PHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFE  883

Query  630  LPVLKVRSMLLETPQGRIQA--KKWSRVPFSVPDFD  663
            +PV+K+ S ++E     +Q    KW    F    FD
Sbjct  884  IPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFD  919


>sp|Q6Q899|RIGI_MOUSE Antiviral innate immune response receptor 
RIG-I OS=Mus musculus OX=10090 GN=Rigi PE=1 SV=2
Length=926

 Score = 308 bits (790),  Expect = 5e-92, Method: Compositional matrix adjust.
 Identities = 214/696 (31%), Positives = 362/696 (52%), Gaps = 56/696 (8%)

Query  4    RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETV---DGAKVVVLVNRVHLV  60
            R+YQ E+ +PA +GKN II  PTG GKT  +  + + HL+        KVV   N++ + 
Sbjct  245  RNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVY  304

Query  61   TQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTS---PEE  116
             Q    F R  +   + + ++SG         H+   +D++I T ++L   L +   P  
Sbjct  305  EQQATVFSRYFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPS-  363

Query  117  EEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQ-PLPQVLGLTASPGTGGA  175
                 L+VF+L++ DECH+T K+  YN IM +YL+ KL  ++ PLPQV+GLTAS G G A
Sbjct  364  -----LSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRDPLPQVVGLTASVGVGDA  418

Query  176  SKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKK  235
               + A+ H+ +LCA LD   I + ++   +L++   +P K       R+ + F  ++ +
Sbjct  419  KTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQ  478

Query  236  LMDQIHD-----HLEMPEL----SRKFGTQMYEQQVVKLSEAAALAGL----QEQRV---  279
            LM +          E+ +L    +R+FGTQ YEQ +V + +A ++  +    +E RV   
Sbjct  479  LMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKA  538

Query  280  ---YALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKN  336
               Y  HLR+YNDAL+I +  +  DAL  L+ F+H   V +      ER L   F+++  
Sbjct  539  LFLYTSHLRKYNDALIISEDAQMTDALNYLKAFFH--DVREAAFDETERELTRRFEEKLE  596

Query  337  ELAHLATH-GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQT  395
            EL  ++     ENPKL  L  +LQ ++      + I+F +TR    +L  W+++   L  
Sbjct  597  ELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSF  656

Query  396  VDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ-DGTLNLLVATSVAEEGLDIPHCNVVV  454
              ++  +L G G ++++T MT   Q+ V++ F+  G  N+L+ATSVA+EG+DI  CN+V+
Sbjct  657  --LKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVI  714

Query  455  RYGLLTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMD  514
             Y  + N I M+Q RGR RA  S   F+ T  +  +++E  N   E +M +++  +Q  D
Sbjct  715  LYEYVGNVIKMIQTRGRGRARDS-KCFLLTSSADVIEKEKANMIKEKIMNESILRLQTWD  773

Query  515  QAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPV---EHVQLLCINCMVAVGHGSDLRK  571
            + ++   +  +Q         +   R++Q +  PV   E+ +LLC  C     + +D+R 
Sbjct  774  EMKFGKTVHRIQ-------VNEKLLRDSQHKPQPVPDKENKKLLCGKCKNFACYTADIRV  826

Query  572  VEGTHHVNVNPNFSNYYNVSRDPVVINKVFKDWKPGGVISC--RNCGEVWGLQMIYKSVK  629
            VE +H+  +   F   +     P    K++ +++    I C  +NC   WG+ + YK+ +
Sbjct  827  VETSHYTVLGDAFKERFVCKPHPK--PKIYDNFEKKAKIFCAKQNCSHDWGIFVRYKTFE  884

Query  630  LPVLKVRSMLLETPQGRIQAK--KWSRVPFSVPDFD  663
            +PV+K+ S ++E     +Q +  KW    F    FD
Sbjct  885  IPVIKIESFVVEDIVSGVQNRHSKWKDFHFERIQFD  920


>sp|Q9GLV6|RIGI_PIG Antiviral innate immune response receptor 
RIG-I OS=Sus scrofa OX=9823 GN=RIGI PE=2 SV=1
Length=940

 Score = 280 bits (716),  Expect = 2e-81, Method: Compositional matrix adjust.
 Identities = 214/698 (31%), Positives = 339/698 (49%), Gaps = 55/698 (8%)

Query  4    RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVD---GAKVVVLVNRVHLV  60
            R YQ E+ +PA  GKN II  PTG GKT  +  + + HL+        KVV    ++ + 
Sbjct  242  RKYQLELALPAQNGKNTIICAPTGCGKTFVSLLICEHHLKKFPRGRKGKVVFFAIQLPVY  301

Query  61   TQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
             Q    F +  +   + V  +SG          +    D++I T ++L   LT+      
Sbjct  302  EQQKSVFSKHFERLGYKVAGISGATSDTVCVEQIVENSDIIILTPQILVNCLTNGT---I  358

Query  120  VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQ-RAQPLPQVLGLTASPGTGGASKL  178
              L+VF+L++ DECH+T K   YNVIM  YL+ KL   +  LPQV+GLTAS G G A   
Sbjct  359  PSLSVFTLMIFDECHNTSKQHPYNVIMFSYLDRKLGGSSDSLPQVIGLTASVGVGDAKNK  418

Query  179  DGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMD  238
              A  ++ +LCA+LDT  I + ++   +L+E   +P K +     R+ D F  ++ +LM 
Sbjct  419  AEATEYICKLCASLDTSVIATVRDNLEELEEVVYKPQKFFRKVELRTTDRFKCIISQLMM  478

Query  239  QIHDHLE--MPEL------------SRKFGTQMYEQQVVKLSEAAALAGL----QEQRV-  279
            +I    +    EL            +  FGTQ YEQ +VK+ +  A+  +    +E R+ 
Sbjct  479  EIESLAKSIFEELGTITLGGLFQIQNSNFGTQKYEQWIVKVQKECAVFQMPDKDKESRIC  538

Query  280  -----YALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDR  334
                 Y  HLR YNDAL+I++  R  DAL  L+DF+   ++        E+ L   F+++
Sbjct  539  KALFSYMSHLRIYNDALIINEHARMKDALDYLKDFFR--NIRAAGFDEIEQDLTQRFEEK  596

Query  335  KNELAHLATH-GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGL  393
              EL  ++     ENPKL  L  ILQ ++  +   R I+F +TR    +L  W+++   L
Sbjct  597  LQELESISIDPSNENPKLRDLCFILQEEYHLNPETRTILFVKTRALVDALKKWIKENPKL  656

Query  394  QTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ-DGTLNLLVATSVAEEGLDIPHCNV  452
                ++  +L G G ++Q+  MT   Q+ V+  F+ D    +L+ TSVA+EG+DI  CN+
Sbjct  657  SF--LKPSILTGRGKTNQNIGMTLPAQKCVLDTFRTDKDNKILITTSVADEGIDIAQCNL  714

Query  453  VVRYGLLTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQK  512
            V+ Y  + N I M+Q RGR RA  S   F+ T  +  + +E +N   E +M  A+  +Q 
Sbjct  715  VILYEYVGNVIKMIQTRGRGRARGS-KCFLLTANADLIDKEKMNMYKEEMMNGAILILQT  773

Query  513  MDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQLLCINCMVAVG---HGSDL  569
             D+A ++ KI  +Q         +   R+NQ +  PV   +   + C        + +D+
Sbjct  774  WDEAVFKEKIHQIQ-------IREKIIRDNQGKPEPVPDKKTKKLLCKKCKAFACYTADI  826

Query  570  RKVEGTHHVNVNPNFSNYYNVSRDPVVINKVFKDWKPGGVISCR--NCGEVWGLQMIYKS  627
            R VE  H   V   F   +     P    K F + +    I C   +C   WG+ + YK+
Sbjct  827  RMVEKCHFTVVGDAFRERFVSKLHPK--PKSFGNIEKRAKIYCARPDCSHDWGIYVRYKA  884

Query  628  VKLPVLKVRSMLLETPQGRIQA--KKWSRVPFSVPDFD  663
             ++P +K+ S ++E     +Q    KW    F    FD
Sbjct  885  FEMPFIKIESFVVEDIATGVQTVHAKWKDFNFEKLSFD  922


>sp|Q7S8J7|DCL1_NEUCR Dicer-like protein 1 OS=Neurospora crassa 
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / 
FGSC 987) OX=367110 GN=dcl-1 PE=2 SV=1
Length=1584

 Score = 135 bits (340),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 146/518 (28%), Positives = 238/518 (46%), Gaps = 80/518 (15%)

Query  4    RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAA----YVAKRHLETVDGA----KVVVLVN  55
            R YQ E+   A + +N I  L TG+GKT  AA    +V    LE  +          LV+
Sbjct  123  REYQVELFERAKQ-QNTIAVLDTGSGKTLIAAMLLRWVITGELEDREKGLPRRIAFFLVD  181

Query  56   RVHLVTQHGEEFRRMLDGRWTVTTLSGDM----GPRAGFGHLARCHDLLICTAELLQMAL  111
            +V LV Q      + LD  + +  L G+M      +A +      +++++CTAE+L  AL
Sbjct  182  KVALVFQQHSFLTKNLD--FPMEKLCGEMVEGVESKAFWKEALEQNEVVVCTAEILSTAL  239

Query  112  TSPEEEEHVELTVFSLIVVDECHHTHKDTVY-NVIMSQYLELKLQRAQPLPQVLGLTASP  170
                    + +   +L++ DE HHT KD  Y  +I + Y++ +L+R    P++LGLTASP
Sbjct  240  ----HHSWIRMDQINLLIFDEAHHTKKDHPYARIIKNFYIDEQLERR---PRILGLTASP  292

Query  171  GTG------GASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQ-QPCKQYNLCHR  223
                      A++L+  ++  +   A+             P   +H+  +P  +  + + 
Sbjct  293  VDAKVDPRRAAAELEALLHSQIATAAD-------------PAALQHTICKPKTELVVEYV  339

Query  224  RSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALH  283
            R +     +L K + ++    E+ +    F T          S A+ L      R + L 
Sbjct  340  RGRPDSETVLNKQLRKLVGGQELFKKPLNFTT----------SAASKLGTWCADRYWQLF  389

Query  284  LRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLAT  343
             ++ +   L   T R +  +AAL +   + HV + +                +EL +  T
Sbjct  390  FKQEDIVKLESRTERDLMKVAALDEITEK-HVKQVR--------------EAHELVNAHT  434

Query  344  HGPE-------NPKLEMLEKILQRQFSSS-NSPRGIIFTRTRQSAHSLLLWLQQQQGLQT  395
              P        + K+ ML +IL+ QF     + R IIF R R +A  L   LQQ +    
Sbjct  435  FSPAALDPTMLSSKVIMLVRILRDQFERGVGAQRCIIFVRQRNTAMLLADLLQQPEIKSH  494

Query  396  V-DIRAQLLIGAGNSSQS---THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN  451
            +  I A++L+G G +  S     +  + Q  +I+KF+ G +N L ATSVAEEGLDIP CN
Sbjct  495  IPSIAAEVLVGGGTTGSSYVNAKINFQQQNRIIRKFKLGEINCLFATSVAEEGLDIPDCN  554

Query  452  VVVRYGLLTNEISMVQARGRARADQSVYAFVATEGSRE  489
            +V+R+ L    I  +Q+RGRAR   S Y  +  +G+ E
Sbjct  555  IVIRFDLYDTLIQCIQSRGRARRPDSRYIQMIEKGNYE  592


>sp|A2RAF3|DCL1_ASPNC Dicer-like protein 1 OS=Aspergillus niger 
(strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) OX=425011 
GN=dcl1 PE=3 SV=2
Length=1525

 Score = 130 bits (327),  Expect = 8e-30, Method: Compositional matrix adjust.
 Identities = 144/518 (28%), Positives = 235/518 (45%), Gaps = 69/518 (13%)

Query  1    MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLET-----VDGAK---VVV  52
            ++ R YQ E+   A + +N I  L TG+GKT  A  + K  LE      ++G        
Sbjct  115  LDPREYQLELFERA-KVQNTIAVLDTGSGKTLIAVLLLKHTLEKELNDRMEGKPHRIAFF  173

Query  53   LVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMG----PRAGFGHLARCHDLLICTAELLQ  108
            LV+ V L  Q     R  LD   +V    G MG     ++ +    + + +++CTAE+L 
Sbjct  174  LVDSVTLAYQQAAVLRNNLDQ--SVGHFFGAMGTDLWSKSVWDQHFQKNMVIVCTAEILN  231

Query  109  MALTSPEEEEHVELTVFSLIVVDECHHTHKDTVY-NVIMSQYLELKLQRAQPLPQVLGLT  167
              L +     +++++  ++++ DE HHT KD  Y  +I   YLE    +    P++ G+T
Sbjct  232  QCLLN----SYIKMSQINILIFDEAHHTKKDHPYARIIRDSYLEEVYSKR---PRIFGMT  284

Query  168  ASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQD  227
            ASP       +D A      L + + T   MS       L++ +++P ++    ++  Q 
Sbjct  285  ASPIDTKGDIVDEATRLEKLLDSRIATTSNMS------LLRQVARRPVERVWSFNKLEQ-  337

Query  228  PFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAA--LAGLQEQRVYALHLR  285
            PF   L K       HLE      +FG     + + + +  A+  L      R +A  L 
Sbjct  338  PFATSLYK-------HLE-----DRFGDMACLEGIFRFAWQASSELGRWCSDRAWARAL-  384

Query  286  RYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAE---RRLLALFDD----RKNEL  338
                         A D L  L+    +   ++T     E   + +L + +     +    
Sbjct  385  -------------ADDVLPKLEGSVRKTANSETSSNVPESAYKEILRITEASEIVKSYAF  431

Query  339  AHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI  398
            +   T G  +PK+++L + L R F      + I+FT+ R +A   L+  +  Q L    +
Sbjct  432  SSPETFGQLSPKVQVLREELARYFGRQTETKCIVFTQKRYTA---LILAELFQTLNIPFL  488

Query  399  RAQLLIGAGNSS-QSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG  457
            R  +LIG  +      ++T R Q   + KF+ G +N L ATSVAEEGLDIP CN+VVR+ 
Sbjct  489  RPGVLIGVRSGDLAGMNITFRQQFISLVKFRTGEINCLFATSVAEEGLDIPDCNLVVRFD  548

Query  458  LLTNEISMVQARGRARADQSVYAFVATEGSRELKRELI  495
            L    I  VQ+RGRAR   S YA +   G+ E ++ L+
Sbjct  549  LYQTLIQYVQSRGRARHFNSTYASMVERGNLEHEQRLL  586


>sp|A1DE13|DCL1_NEOFI Dicer-like protein 1 OS=Neosartorya fischeri 
(strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 
/ JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dcl1 PE=3 SV=1
Length=1538

 Score = 129 bits (323),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 140/512 (27%), Positives = 222/512 (43%), Gaps = 69/512 (13%)

Query  1    MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAK----RHLETVDGAK----VVV  52
            ++ R YQ E+   A + +N I  L TG+GKT  A  + +      L+     K       
Sbjct  125  LDPREYQIELFERA-KTQNTIAVLDTGSGKTLIAVLLLRHTILNELDNRANGKPHRVSFF  183

Query  53   LVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGP-----RAGFGHLARCHDLLICTAELL  107
            LV+ V L  Q     R  +D    V    G MG      R    HL R + +++CTAE+L
Sbjct  184  LVDSVTLAYQQAAVLRNNIDQ--NVAHFFGAMGTDLWDKRTWDEHLQR-NMVIVCTAEIL  240

Query  108  QMALTSPEEEEHVELTVFSLIVVDECHHTHKDTVY-NVIMSQYLELKLQRAQP--LPQVL  164
               L +     +V++   +L++ DE HH  KD  Y  +I   Y      +AQP   P+V 
Sbjct  241  NQCLLN----SYVKMDQINLLIFDEAHHAKKDHPYARIIRDSYF-----KAQPSQRPRVF  291

Query  165  GLTASPG------TGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQY  218
            G+TASP       T  A++L+  ++  +   + +              L+E   +P ++ 
Sbjct  292  GMTASPIDTKGDITEAATRLETLLDSRIATTSKITL------------LREVVSRPIEKV  339

Query  219  NLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQR  278
               + R + PF   L KLMD  + ++++ E   +F      +     S+ A    L +  
Sbjct  340  -WAYNRLESPFATELYKLMDTRYGNIKVLEGVYRFAWHASSELGKWCSDRAWWHALADDV  398

Query  279  VYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNEL  338
            +  L     N + L+       +  A  +D       ++T               +    
Sbjct  399  LPKLE---GNISKLVESNTLNAEHGAVFKDIIRIREASETV--------------KNYSF  441

Query  339  AHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI  398
            A     G  +PK+++L   L + FS +   + I+FT+ R +A  L    +    L    +
Sbjct  442  ADPELPGELSPKVQLLRMELSKHFSDTTGTKCIVFTQKRYTAKILN---ELFTVLNIPHL  498

Query  399  RAQLLIGA-GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG  457
            R  +LIG         ++T R Q   + KF+ G +N L ATSVAEEGLDIP CN+VVR+ 
Sbjct  499  RPGVLIGVRPGDIGGMNVTFRQQFLALVKFRTGEINCLFATSVAEEGLDIPDCNLVVRFD  558

Query  458  LLTNEISMVQARGRARADQSVYAFVATEGSRE  489
            L    I  VQ+RGRAR   S YA +  + + E
Sbjct  559  LYRTLIQYVQSRGRARHCTSTYAIMVEKDNAE  590


>sp|Q4WVE3|DCL1_ASPFU Dicer-like protein 1 OS=Aspergillus fumigatus 
(strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293) 
OX=330879 GN=dcl1 PE=3 SV=3
Length=1537

 Score = 125 bits (315),  Expect = 2e-28, Method: Compositional matrix adjust.
 Identities = 139/512 (27%), Positives = 220/512 (43%), Gaps = 69/512 (13%)

Query  1    MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHL--ETVDGAK------VVV  52
            ++ R YQ E+   A + +N I  L TG+GKT  A  + +  +  E  D A          
Sbjct  124  LDPREYQIELFERA-KTQNTIAVLDTGSGKTLIAVLLLRHTILNELDDRANGKTHRVSFF  182

Query  53   LVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGP-----RAGFGHLARCHDLLICTAELL  107
            LV+ V L  Q     R  +D    V    G MG      R    HL R + +++CTAE+L
Sbjct  183  LVDSVTLAYQQAAVLRNNIDQ--NVAHFFGAMGTDLWDKRTWDKHLQR-NMVIVCTAEIL  239

Query  108  QMALTSPEEEEHVELTVFSLIVVDECHHTHKDTVY-NVIMSQYLELKLQRAQP--LPQVL  164
               L +     +V +   +L++ DE HH  KD  Y  +I   Y      +AQP   P+V 
Sbjct  240  NQCLLN----SYVRMDQINLLIFDEAHHAKKDHPYARIIRDSYF-----KAQPSQRPRVF  290

Query  165  GLTASPG------TGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQY  218
            G+TASP       T  A++L+  ++  +   + +              L+E   +P ++ 
Sbjct  291  GMTASPIDTKGDITEAATRLETFLDSRIATTSKITL------------LREVVSRPIEKV  338

Query  219  NLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQR  278
               + R + PF   L KLMD  + ++++ E   +F      +     S+ A    L +  
Sbjct  339  -WAYNRLEPPFATELYKLMDTRYGNIKVLEGVYRFAWNASSELGKWCSDRAWWHALADDV  397

Query  279  VYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNEL  338
            +  L     N   LI       +  A  +D       ++T               +    
Sbjct  398  LPKLE---GNINKLIESNTMKAEHGAVFKDIIRIREASETV--------------KNYFF  440

Query  339  AHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI  398
                  G  +PK++ L   L + F+ +   + I+FT+ R +A  L    +    L   ++
Sbjct  441  TDPELPGELSPKVQRLRMELSKHFNDTTGTKCIVFTQKRYTAKILN---ELFTVLNIPNL  497

Query  399  RAQLLIGA-GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG  457
            R  +LIG         ++T R Q   + KF+ G +N L ATSVAEEGLDIP CN+V+R+ 
Sbjct  498  RPGVLIGVRPGDIGGMNITFRQQFLALVKFRTGEINCLFATSVAEEGLDIPDCNLVIRFD  557

Query  458  LLTNEISMVQARGRARADQSVYAFVATEGSRE  489
            L    I  VQ+RGRAR   S YA +  + + E
Sbjct  558  LYRTLIQYVQSRGRARHCTSTYAIMVEKDNAE  589


>sp|Q2U6C4|DCL1_ASPOR Dicer-like protein 1 OS=Aspergillus oryzae 
(strain ATCC 42149 / RIB 40) OX=510516 GN=dcl1 PE=3 SV=2
Length=1523

 Score = 124 bits (310),  Expect = 8e-28, Method: Compositional matrix adjust.
 Identities = 141/504 (28%), Positives = 220/504 (44%), Gaps = 72/504 (14%)

Query  1    MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHL--ETVDGAK------VVV  52
            ++ R YQ E+   A + +N I  L TG+GKT  A  + K  +  E +D A          
Sbjct  114  LDPREYQVELFERA-KSQNTIAVLDTGSGKTLIAVLLLKHIIQNELIDRANGKPPRISFF  172

Query  53   LVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMG----PRAGFGHLARCHDLLICTAELLQ  108
            LV+ V L  Q     R  LD    V    G MG     +  + H    + +++CTAE+L 
Sbjct  173  LVDSVTLAFQQAAVLRNNLDQ--NVAQFFGAMGTDLWSKQTWDHQFENNMVIVCTAEILN  230

Query  109  MALTSPEEEEHVELTVFSLIVVDECHHTHKDTVY-NVIMSQYLELKLQRAQPL--PQVLG  165
              L +     ++ +   +L++ DE HHT KD  Y  +I   YL     +A P   P++ G
Sbjct  231  QCLLN----SYIRMDQINLLIFDEAHHTKKDHPYARIIRESYL-----KADPTKRPRIFG  281

Query  166  LTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRS  225
            +TASP       ++ A    + L + + T    S  N    L+E  ++P ++ +  + + 
Sbjct  282  MTASPIDTKGDIIESATKLEVLLDSKIAT---TSKPNL---LREVVRRPIEE-SWEYDKL  334

Query  226  QDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVK--LSEAAALAGLQEQRVYALH  283
              PF   L ++            L  +FG     Q V +  L  ++ L      R +A  
Sbjct  335  DPPFATKLYQI------------LQARFGDISSLQPVFRFTLQASSELGPCCADRAWAYA  382

Query  284  LRRYNDALLIHDTVRAVDALAALQDFYHR--EHVTKTQILCAER---RLLALFDDRKN-E  337
            L              A D L  L+    +  + ++     CA +   R+    D  KN  
Sbjct  383  L--------------ADDVLPKLEGNVRKLAQSISSPIPQCALKEISRIQEASDIVKNHS  428

Query  338  LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD  397
                   G  +PK+++L + L + F      + I+FT+ R +A  L         L+   
Sbjct  429  FNSPNVPGELSPKVQLLRQKLIKYFEHPTKTKCIVFTQKRYTAKMLFDLFST---LEIPY  485

Query  398  IRAQLLIGAGNSS-QSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY  456
            +R  +LIG  +      +++ R Q   + KF+ G +N L ATSVAEEGLDIP CN+VVR+
Sbjct  486  LRPGVLIGVRSGDIVGMNVSFRQQFLALVKFRSGEINCLFATSVAEEGLDIPDCNLVVRF  545

Query  457  GLLTNEISMVQARGRARADQSVYA  480
             L    I  VQ+RGRAR   S YA
Sbjct  546  DLYNTLIQYVQSRGRARHSSSTYA  569


>sp|A1CBC9|DCL1_ASPCL Dicer-like protein 1 OS=Aspergillus clavatus 
(strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / 
NRRL 1 / QM 1276 / 107) OX=344612 GN=dcl1 PE=3 SV=2
Length=1534

 Score = 124 bits (310),  Expect = 8e-28, Method: Compositional matrix adjust.
 Identities = 144/507 (28%), Positives = 221/507 (44%), Gaps = 77/507 (15%)

Query  1    MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHL--ETVDGAK------VVV  52
            ++ R YQ E+   A + +N I  L TG+GKT  A  + +  L  E  D A          
Sbjct  121  LDPREYQIELFERA-KAQNTIAVLDTGSGKTLIAVLLLRHVLQNELNDRANGKPHRVSFF  179

Query  53   LVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGP----RAGFGHLARCHDLLICTAELLQ  108
            LV+ V L  Q     R  +D    V    G MG     R  +    + + +++CTAE+L 
Sbjct  180  LVDSVTLAYQQAAVLRNNIDQ--NVAHFFGAMGTDLWDRQVWEEHLQQNMVIVCTAEILN  237

Query  109  MALTSPEEEEHVELTVFSLIVVDECHHTHKDTVY-NVIMSQYLELKLQRAQP--LPQVLG  165
              L +     HV +   +L++ DE HHT KD  Y  +I   Y      +A P   P++ G
Sbjct  238  QCLLN----SHVRMNQINLLIFDEAHHTKKDHPYARIIRDSYF-----KASPPQRPRIFG  288

Query  166  LTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRS  225
            +TASP       +  A      L + + T   ++       L++   +P ++    + R 
Sbjct  289  MTASPIDTKGDIIAAATRLETLLDSRIATTSKIT------LLRQVVSRPIEKV-WAYDRL  341

Query  226  QDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR  285
            + PF   L KLM+    +++  E   +F      +     S+ A L        YAL   
Sbjct  342  ESPFKTNLHKLMENRFGNVKALEGVFRFAWYASSELGRWCSDRAWL--------YAL---  390

Query  286  RYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRL----LALFDDRKNELAHL  341
                         A D L  L+   H   + ++     ER +    + L  +  N +   
Sbjct  391  -------------ADDVLPKLEG--HVNKLAESTAAATERDMAFKEITLIKEASNIVKAH  435

Query  342  ATHGPE-----NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSL--LLWLQQQQGLQ  394
              + PE     +PK+ +L+  L + FS +   + IIFT+ R +A +L  L  +     L 
Sbjct  436  TFNDPEFPGELSPKVRLLQTELSKHFSHAPETKCIIFTQKRYTAKTLHELFTI-----LS  490

Query  395  TVDIRAQLLIGAGNSS-QSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV  453
               +R  +LIG  +      ++T R Q   + KF+ G +N L ATSVAEEGLDIP CN+V
Sbjct  491  IPHLRPGVLIGVRSGDIGGMNITFRQQFLALVKFRKGEINCLFATSVAEEGLDIPDCNLV  550

Query  454  VRYGLLTNEISMVQARGRARADQSVYA  480
            VR+ L    I  VQ+RGRAR   S YA
Sbjct  551  VRFDLYHTLIQYVQSRGRARHYHSTYA  577


>sp|Q0CW42|DCL1_ASPTN Dicer-like protein 1 OS=Aspergillus terreus 
(strain NIH 2624 / FGSC A1156) OX=341663 GN=dcl1 PE=3 SV=2
Length=1519

 Score = 117 bits (294),  Expect = 7e-26, Method: Compositional matrix adjust.
 Identities = 142/505 (28%), Positives = 223/505 (44%), Gaps = 79/505 (16%)

Query  4    RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLET--VDGAK------VVVLVN  55
            R YQ E+   A + +N I  L TG+GKT  A  + K  ++T  +D A          LV+
Sbjct  110  REYQIELFERA-KVQNTIAVLDTGSGKTLIAVLLLKHVIQTELIDRANGNPPRISFFLVD  168

Query  56   RVHLVTQHGEEFRRMLDGRWTVTTLSGDMG----PRAGFGHLARCHDLLICTAELLQMAL  111
             V LV Q     R  LD    V    G MG     +  +      + +++CTAE+L   L
Sbjct  169  SVTLVYQQASVLRNNLDQ--NVAHFFGAMGVDLWNKQTWAEHFEKNMVIVCTAEILNQCL  226

Query  112  TSPEEEEHVELTVFSLIVVDECHHTHKDTVY-NVIMSQYLELKLQRAQPLPQVLGLTASP  170
             +     ++ +   +L+V DE HHT KD  Y  +I   YL +        P++ G+TASP
Sbjct  227  LN----AYITMQQINLLVFDEAHHTKKDHPYARIIRDSYLRVP---PSSRPRIFGMTASP  279

Query  171  GTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFG  230
                   L+ A N    L A LD+    + +     L++   +P ++  + + + Q  F 
Sbjct  280  VDTKGDVLEAARN----LEALLDSKIATTSKLTI--LRQVVNRPNEEVWI-YDKLQPTFT  332

Query  231  DLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAA--LAGLQEQRVYALHLRRYN  288
              L KLM+             +FG   + + + + +  A   L      RV+   L   +
Sbjct  333  SDLYKLMES------------RFGDISHLEPMFRFARHATSELGTWCADRVWVSALA--D  378

Query  289  DAL-LIHDTV---RAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATH  344
            D L  +  ++   R    L  L    HR+ +T+ +                +EL  + +H
Sbjct  379  DVLPKVEGSIGGKRQSTGLGQLPKDVHRD-ITRIK--------------EASEL--VESH  421

Query  345  GPENP--------KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTV  396
             P +P        K+ +L K + + F    + + I+FT  R +A  L         L   
Sbjct  422  PPNDPGAPEALSSKVRVLWKEISQCFGQETNTKCIVFTEKRYTAKVLFDLFTV---LNVP  478

Query  397  DIRAQLLIGAGNSSQ-STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVR  455
             +R  +LIG  +S +   ++T R Q   + +F+ G +N L AT+VAEEGLDIP CN+VVR
Sbjct  479  GLRPGVLIGVRSSDRIGMNVTFRQQILTMVRFRTGEINCLFATAVAEEGLDIPDCNLVVR  538

Query  456  YGLLTNEISMVQARGRARADQSVYA  480
            + L    I  VQ+RGRAR   S YA
Sbjct  539  FDLYKTLIQYVQSRGRARHADSTYA  563


>sp|Q0UI93|DCL1_PHANO Dicer-like protein 1 OS=Phaeosphaeria nodorum 
(strain SN15 / ATCC MYA-4574 / FGSC 10173) OX=321614 GN=DCL1 
PE=3 SV=2
Length=1522

 Score = 116 bits (291),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 139/527 (26%), Positives = 220/527 (42%), Gaps = 86/527 (16%)

Query  4    RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETV--DGAK------VVVLVN  55
            R YQ E+ + A + +N I  L TG GKT  A  + +  LE    + AK         LV+
Sbjct  70   RDYQMELFLRA-KMQNTIAVLDTGTGKTHIATLLLRHVLEEELENRAKGCAHKMAFFLVD  128

Query  56   RVHLVTQHGEEFRRMLDGRWTVTTLSGDMGP----RAGFGHLARCHDLLICTAELLQMAL  111
             V+LV Q     R  LD    V  +SG MG     +  +  L   + +++CTA++L   +
Sbjct  129  SVNLVFQQANVLRCGLDQ--GVEGISGAMGQSLFQKQTWDKLFAVNMVIVCTAQVLVDCM  186

Query  112  TSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASP-  170
                    + ++  +L++ DE HH   +  Y  +M  Y   +L  ++  P++  +TASP 
Sbjct  187  M----HSFMSISRMNLLIFDEAHHAKSNHPYARVMKDYYAHELDTSK-RPRIFAMTASPV  241

Query  171  GTGGASKLDGAINHVLQLCANLDTW----------------CIMSPQN---CCPQLQEHS  211
               G S       HV +    L+T                  I  P+       +L+   
Sbjct  242  DVKGQSA-----EHVREAARELETLLHSRIATTSDSALARNSITRPEEEVAVYTRLRNEF  296

Query  212  QQPCKQYNLCHRRSQDPFGDL--LKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAA  269
            + P       H++ +  +GD+   +KL   I   L   EL R + + MY        ++ 
Sbjct  297  ETPL------HQKVKAKYGDVAPFRKLF--ITAKLHASELGR-WASDMYWSFAFADEQSR  347

Query  270  ALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLA  329
             L  ++E+  Y    R ++ A L     R  +A A +Q +         Q L +      
Sbjct  348  KLQ-IREELKYNRSKRDWSAAELDAQMARLKEATAFVQQYEIGAPTLSEQDLSS------  400

Query  330  LFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQ  389
                                K+  L+  L   +  +   R I+F   R +A  L L    
Sbjct  401  --------------------KVMKLQYWLNLYYERTTLARCIVFVEKRHTAQLLKLIFDH  440

Query  390  QQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPH  449
              G    ++   +L+G  N +   +++ R Q   +QKF+ G LN L ATSVAEEGLDIP 
Sbjct  441  IGG---PNLHCDVLVGINNRAGEENVSLRSQILTLQKFRRGELNCLFATSVAEEGLDIPQ  497

Query  450  CNVVVRYGLLTNEISMVQARGRARADQSVYAFVATEGSRELKRELIN  496
            CN+VVR+ L    I  VQ+RGRAR   S Y  +    ++E    L+N
Sbjct  498  CNLVVRFDLYRTMIGYVQSRGRARHRNSKYLHMLEAENKEHTERLMN  544


>sp|Q58900|Y1505_METJA Putative ATP-dependent RNA helicase MJ1505 
OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 
2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ1505 
PE=3 SV=2
Length=778

 Score = 108 bits (271),  Expect = 3e-23, Method: Compositional matrix adjust.
 Identities = 127/514 (25%), Positives = 221/514 (43%), Gaps = 95/514 (18%)

Query  1    MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV  60
            +E R YQ  +   AL+ K + + L TG GKT  A  V    L   DG KV++L     LV
Sbjct  13   LEARLYQQIIAANALKKKTLCV-LSTGLGKTAIAILVIAGILTKKDG-KVLILAPSRPLV  70

Query  61   TQHGEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
             QH    +++L+     +  L+G + P+     L +   + I T ++++  + +      
Sbjct  71   EQHYNRLKQVLNIDEDKIIALTGKIQPKKR-AELYKKGKIFIATPQVIENDIIAG----R  125

Query  120  VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLD  179
            + +  F L++ DE HHT  D  Y  +  ++        +    +LGLTASPG+       
Sbjct  126  INVDEFILLIADEAHHTTGDHAYAFVAKKF--------KDKCHILGLTASPGSD------  171

Query  180  GAINHVLQLCANLDTWCIM----SPQNCCPQLQEHSQQPCK-----QYNLCHRRSQDPFG  230
              I+ V+++C NL    +       ++  P + +    P +     ++    +   +   
Sbjct  172  --IDKVMEICENLGIEHVEVRTEDDEDVKPYIAKVKLIPIRIDLPNEFKRALKLINEALK  229

Query  231  DLLKKLMD-----QIHD--HLEMPELSRKFGTQMYEQQV-----------VKLSEAAALA  272
            + LK L D      I D    E+ EL+ K  +  Y+++V           +KL  A  L 
Sbjct  230  ERLKILKDAGVINSIADVTKTELIELNNKLFS--YDEEVKYELIKVCSEALKLMHAKELL  287

Query  273  GLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFD  332
              Q + V+  ++ + +         R   A + + D   RE V                 
Sbjct  288  ESQGKSVFLNYINKLS-------MQRTKSAKSIVNDEKVREAVN----------------  324

Query  333  DRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQG  392
                    L     E+PKL  +  +++     +   R IIF + R +   ++  L Q   
Sbjct  325  -------LLMKSDVEHPKLGKVVDMVKNILEKNKDERIIIFAQYRDTVEKIVNLLTQN--  375

Query  393  LQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ-DGTLNLLVATSVAEEGLDIPHCN  451
                 I+A   IG  N  +   M+Q++Q E I++F+ +G++  LV+TSV+EEG+DIP  N
Sbjct  376  ----GIKAIRFIGQANK-EGKGMSQKEQIEAIERFKKEGSV--LVSTSVSEEGIDIPSVN  428

Query  452  VVVRYGLLTNEISMVQARGRARADQ--SVYAFVA  483
             ++ Y  + +EI  +Q RGRA   +   VY  +A
Sbjct  429  YIIFYEPVPSEIRFIQRRGRAMRGEGGKVYVLIA  462


>sp|Q2VF18|DCL2_CRYPA Dicer-like protein 2 OS=Cryphonectria parasitica 
OX=5116 GN=DCL-2 PE=3 SV=1
Length=1451

 Score = 109 bits (272),  Expect = 3e-23, Method: Compositional matrix adjust.
 Identities = 141/546 (26%), Positives = 241/546 (44%), Gaps = 87/546 (16%)

Query  1    MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVV-VLVNRVHL  59
            M+ R+YQ E++  +L+ +NII  + TG+GKT  A    K  LE +   +VV  L   V L
Sbjct  61   MDARAYQLEMLEASLK-ENIICAMDTGSGKTHVAILRIKAELEEMPEGQVVWFLTPTVSL  119

Query  60   VTQHGEEFR--------RMLDG-----RWTVTTLSGDMGPRAGFGHLARCHDLLICTAEL  106
              Q     +        +++ G      W+ TT  G +              ++I T ++
Sbjct  120  CAQQYAVVKAQIPSVQTKIVTGADKVDSWSSTTWDGAL----------LNVKVIITTPQV  169

Query  107  LQMALTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGL  166
            L  AL        V ++  +L+V DE HH +K+  Y+ +M ++      + +P+P++LGL
Sbjct  170  LLDALL----HGFVNISSLALMVFDEAHHCNKNHAYSRVMKEFYWESKTKHEPVPRILGL  225

Query  167  TASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQ  226
            TASP       +   I+ + +L + LD  C  SP     +L  +SQ+P   +++ +    
Sbjct  226  TASP------VVRSDISSLKRLESTLDAVC-RSPTRHREELIANSQRPA-LFSIIYNPKL  277

Query  227  DP----FGDLLKKLMDQIH--DHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVY  280
             P    F + L KLM   +  + LE P +      ++ ++   KL +A     ++E+R Y
Sbjct  278  QPYAAGFSESLTKLMAARNKLNILEDPYVV-SLRAEISDRSRRKLEKA-----IKEKRTY  331

Query  281  ---------------ALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAER  325
                           A  L  +     I + +R    LA +    +R+  +      AE 
Sbjct  332  VQDTMKSFCRRSMEMAKELGAWAADWFISEAIRLF--LAGI----YRQGASSKSFRDAEV  385

Query  326  RLLA-LFDDRKNE-LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSL  383
              LA +F D   E    L TH   +   E +++I++   +     R I F + R +   L
Sbjct  386  IFLARVFQDANIEPPPPLTTHSGLS---EKVQRIIEVLLNYDKDARAICFVKERATTVVL  442

Query  384  LLWLQQQQGLQTVDIRAQLLIGA----GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATS  439
               L     + +   R   ++G     G       + +    + ++ F++G  N+LVATS
Sbjct  443  SHILTTHPEVSS-KFRIGTMVGTSFVPGVKRDFLDLPETGGSQCLEAFREGRKNMLVATS  501

Query  440  VAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQS-VYAFVATEGSRELKRELINEA  498
            V EEG+D+P CN+++ +    N  + +Q RGRAR  QS +Y FV  E   +       EA
Sbjct  502  VLEEGIDVPACNLIICFDKPNNLRAFIQRRGRARMRQSHLYLFVEDEAEADW------EA  555

Query  499  LETLME  504
            LE  M+
Sbjct  556  LEAQMK  561


>sp|Q7XD96|DCL3B_ORYSJ Endoribonuclease Dicer homolog 3b OS=Oryza 
sativa subsp. japonica OX=39947 GN=DCL3B PE=3 SV=2
Length=1637

 Score = 104 bits (260),  Expect = 1e-21, Method: Compositional matrix adjust.
 Identities = 130/504 (26%), Positives = 216/504 (43%), Gaps = 47/504 (9%)

Query  9    EVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK-----VVVLVNRVHLVTQH  63
            EV   AL G N I  L TG+GKT  A  +A+ H   V   +     VV L   VHLV Q 
Sbjct  45   EVFEAALRG-NTIAVLDTGSGKTMVAVMLAREHARRVRAGEAPRRIVVFLAPTVHLVHQQ  103

Query  64   GEEFRRMLDGRWTVTTLSGDMGPRAGFGH----LARCHDLLICTAELLQMALTSPEEEEH  119
             E  R   D    + + +  +G   G  H    + R +++++ T ++L  AL        
Sbjct  104  FEVIREYTDLDVMMCSGASRVG-EWGADHWKEEVGR-NEIVVMTPQILLDAL----RHAF  157

Query  120  VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASP-GTGGASKL  178
            + ++  SL++ DECH       Y  IM ++       +Q  P V G+TASP  T GAS L
Sbjct  158  LTMSAVSLLIFDECHRACGSHPYARIMKEF----YFGSQWRPDVFGMTASPVATKGASTL  213

Query  179  DGAINHVLQLCANLDTWC-IMSPQNCCPQLQEHSQQPCKQY-----NLCHRRSQ-----D  227
                 H+ QL   LD    I+  +N        +    K Y     +  + +S+     D
Sbjct  214  HNCEAHISQLELTLDAKIYIVEDRNELESFSPPTTIVNKYYDAYMVDFDNLKSKLQIFSD  273

Query  228  PFGDLLKKLM----DQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALH  283
             F  LL  L     ++  D   + E SRK  ++ + + +  L++   L  +    V  +H
Sbjct  274  EFDSLLVGLQESPSNKFKDTDNILETSRKSLSRYHGKILYSLND---LGPIITSEVVKIH  330

Query  284  LRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLAT  343
            +          D + +  +L  L   Y +E ++  + +  +     +  +  +E   L  
Sbjct  331  IESVKPLCDSEDCIFSKASL-CLHMSYFKEALSLIEEILPQGYGELMKSESGSE--ELTK  387

Query  344  HGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLL  403
             G  + K+  L  I  + F SSN    +IF     +A ++  +++         I     
Sbjct  388  RGYISSKVNTLINIF-KSFGSSNEVLCLIFVDRIITAKAVERFMRGIVNFSCFSISYL--  444

Query  404  IGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI  463
               G S+    ++   Q+  +  F+ G +NLL  T V EEG+D+P+C+ V+R+ L     
Sbjct  445  --TGGSTSKDALSPAVQRFTLDLFRAGKVNLLFTTDVTEEGVDVPNCSCVIRFDLPRTVC  502

Query  464  SMVQARGRARADQSVYAFVATEGS  487
            S VQ+RGRAR + S +  +   G+
Sbjct  503  SYVQSRGRARRNNSEFILMIERGN  526


>sp|Q4WA22|DCL2_ASPFU Dicer-like protein 2 OS=Aspergillus fumigatus 
(strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293) 
OX=330879 GN=dcl2 PE=3 SV=2
Length=1388

 Score = 103 bits (256),  Expect = 3e-21, Method: Compositional matrix adjust.
 Identities = 147/583 (25%), Positives = 248/583 (43%), Gaps = 82/583 (14%)

Query  4    RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVV-VLVNRVHLVTQ  62
            R+YQ E++  +++ +NII+ + TG+GKT  A    K  L+     KVV  L   V L  Q
Sbjct  17   RNYQLEMLEASMK-ENIIVAMDTGSGKTHIAVLRIKAELDICSPDKVVWFLAPTVALCIQ  75

Query  63   HGEEFRRMLDGRWTVTTLSGD----MGPRAGFGHLARCHDLLICTAELLQMALTSPEEEE  118
              E     L    T T    D       ++ +  +   + +++ T  +L  AL+      
Sbjct  76   QHEVIASNLPAVRTRTLTGLDKVELWTDQSIWDAVLNGYRVIVSTHAVLADALS----HG  131

Query  119  HVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQP--LPQVLGLTASPGTGGAS  176
             V+++  +L++ DE HH  +    N IM  +    L ++ P  +P+++GLTASP      
Sbjct  132  FVKMSQLALLIFDEAHHCTRRHAANKIMQDFYHPTLTKSGPAAVPRIMGLTASPVVRS--  189

Query  177  KLDGAINH--VLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLK  234
                  NH  +L + +NLD  C  +P+    +L + + +P  Q         DP G    
Sbjct  190  ------NHQELLMVESNLDAVC-RTPRLHRQELLKFTHRPHLQQ--IWYTPTDPAGFRSA  240

Query  235  KL-MDQIHDHLEMPELSRKFGTQMYEQQVVK--LSEAAALAGLQEQRVYAL-HLRRYND-  289
             L +  ++   E  ++    G   Y Q++ K  L + A    L   + Y    LRR+ D 
Sbjct  241  SLTLGALYHAWENLDI----GDDPYIQRLRKSPLDDRALKKALLTGKTYCREQLRRFVDR  296

Query  290  -------------ALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKN  336
                            I+ +++       L+D     +++       +  L+        
Sbjct  297  SRHIFEELGEWAAEYYIYASIKQ------LRDRVRDSYMSGDWDEAEKAYLVDFLSKIPT  350

Query  337  ELAHLATHGPE----NPKLEMLEKIL----QRQFSSSNSPRGIIFTRTRQSAHSLLLWLQ  388
               H A + P+    +PK E L   L    QR+FS      G+IF + R +  ++   L 
Sbjct  351  SDIHFALNDPDGFRISPKFESLLNFLDSSDQREFS------GLIFVKQRVTVSAMTSLLS  404

Query  389  QQQGLQTVDIRAQLLIGAGNSSQSTH-----MTQRDQQEVIQKFQDGTLNLLVATSVAEE  443
                 +    R    +G  NSS S       +  + Q++ +  F+ G  NL++AT V EE
Sbjct  405  VHPYTRE-RFRCAAYVGWSNSSASKDILGDLLNMQLQRDTLDDFRSGRKNLIIATDVLEE  463

Query  444  GLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYA--FVATEGSRELKR--ELINEAL  499
            G+D+  C+VVV Y    N  S +Q RGRAR  QS +A  F   + S ++ R  +L    +
Sbjct  464  GIDLSACSVVVCYDKPPNLKSFIQRRGRARRKQSTFAIMFPTDDTSADVSRWQDLEQAMI  523

Query  500  ETLME-----QAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQA  537
            E   +     Q+V+A++ +D+   +    D   A LT   A A
Sbjct  524  EAYQDDERQLQSVSALESLDEEVMERLTGDSTSAVLTADMAMA  566


>sp|Q1DKI1|DCL1_COCIM Dicer-like protein 1 OS=Coccidioides immitis 
(strain RS) OX=246410 GN=DCL1 PE=3 SV=3
Length=1500

 Score = 102 bits (255),  Expect = 3e-21, Method: Compositional matrix adjust.
 Identities = 135/525 (26%), Positives = 221/525 (42%), Gaps = 53/525 (10%)

Query  4    RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHL--ETVDGAK------VVVLVN  55
            R YQ E+   A +  NII  L TG+GKT  A  + K  +  E +D +          LV+
Sbjct  100  REYQVELFEKA-KKDNIIAVLDTGSGKTLIAVLLLKHIIEQELIDRSAEKPHRVSFFLVD  158

Query  56   RVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFG-----HLARCHDLLICTAELLQMA  110
             V LV Q     +  ++ R  V    G M      G     HLA+ + +++CTAE+L   
Sbjct  159  SVTLVFQQAAVLQNNINQR--VDKFCGAMETDLWNGETWERHLAK-NMVIVCTAEVLYQC  215

Query  111  LTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASP  170
            L        V++   +L++ DE H+  KD  Y  I+  +  LK   A+  P++ G+TASP
Sbjct  216  LL----HAFVKMENINLLIFDEAHNAKKDHPYARIVKDFY-LKDGNAK-RPKIFGMTASP  269

Query  171  GTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFG  230
                   +  A N    L + + T   +S       L++   +P ++    + R   PF 
Sbjct  270  VDAKMDVVKAARNLETLLNSQIATASNLS------LLRQSVPRPNEEV-WSYDRLDQPFE  322

Query  231  DLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDA  290
              L K +      L   E    F  +         ++      L E+ +  L  R    A
Sbjct  323  TRLYKELRSRFGDLRALEKLFTFSLKASSNLGAWCADWVWSYALTEESLPKLEGRAARTA  382

Query  291  LLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPK  350
            +      + V   A +Q       + ++           L   +   L H          
Sbjct  383  MGNLPIAKIVRPEAEIQRIREASEIIRSHKFGDPAVRPELLSPKVRRLHH----------  432

Query  351  LEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA-GNS  409
             E+L     + F      + I+FT  R +A  L     +   + T  +R  +LIG   ++
Sbjct  433  -ELL-----KYFERHTDTKCIVFTEQRHTARILCDLFSR---IGTKHLRPGVLIGVRSDA  483

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
            S   +++ R Q   +  F+ G +N L ATSVAEEGLDIP CN++VR+ L +     +Q+R
Sbjct  484  SGGMNISFRQQVLAVVSFRKGEVNCLFATSVAEEGLDIPDCNLIVRFDLASTLTQYIQSR  543

Query  470  GRARADQSVYAFVATEGSRELKRELIN--EALETLMEQAVAAVQK  512
            GRAR   S +A +  E    + RE +N  ++ E +M++   ++ K
Sbjct  544  GRARHMNSTFAHL-VERDNFVHRESVNHLQSSEEIMKRFCISLPK  587


>sp|P0C5H7|DCL2_EMENI Dicer-like protein 2 OS=Emericella nidulans 
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) 
OX=227321 GN=dcl2 PE=3 SV=1
Length=1429

 Score = 101 bits (251),  Expect = 1e-20, Method: Compositional matrix adjust.
 Identities = 137/529 (26%), Positives = 225/529 (43%), Gaps = 80/529 (15%)

Query  4    RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQH  63
            RSYQ E+   +L+G NII+ + TG+GKT+ A       LE  DG  +  L   V L  Q 
Sbjct  15   RSYQLEMFEASLKG-NIIVVMGTGSGKTQIALLRIIHELENSDGKLIWFLAPTVPLCLQQ  73

Query  64   GEEFRRMLDGRWTVTTLSGD----MGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
                 + +    + T L  D       +A +  +     +++ T  +L  A+T       
Sbjct  74   HRVISQHIPAVKSRTLLGSDKVELWTEQAVWDAVLEGLQVIVSTPAVLHDAMT----HGF  129

Query  120  VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQP--LPQVLGLTASPGTGGASK  177
            V ++   L++ DE HH  +    N+IM  +    LQ   P  +P++LGLTAS G    S 
Sbjct  130  VRISRLGLLIFDEAHHCIRKHPTNMIMRNFYHPALQEYGPGAVPRILGLTASAG----SS  185

Query  178  LDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQ---YNLCHRRSQDPF-GDLL  233
             +G    +  +  NL++ C  +PQ    +L E++  P  +   Y    + +   + G  L
Sbjct  186  REG----LQTIEMNLNSVCT-TPQAHRQELLEYTHMPELRRVLYTPLMKENASLWEGSTL  240

Query  234  KKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYA--LHLRRYNDAL  291
            +KL+++                  Y    +K     A+   QE  ++A    +R   + L
Sbjct  241  QKLLER---------------DNTYCSGQMKTFVCKAVHIFQELGIWAAEYFIRASVEEL  285

Query  292  LIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG------  345
            L H  V +   L    D+  RE++    IL             K+ +  +  H       
Sbjct  286  LSHAYVHSKIDL----DYDEREYL--VNILS------------KSPVPDIDVHSTDPKDF  327

Query  346  PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
            P +PK E L   L      + S  G+IF   R +A +++ +L           R    IG
Sbjct  328  PVSPKFEALISFLMSTEDINFS--GLIFVEQR-AAVTVMSYLLSTHPSTRDRFRTGSFIG  384

Query  406  AGNSSQSTHM-----TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT  460
              NS+    M     + + Q + +  F+ G  NL+VAT V +EG+D+  C+VV+ Y +  
Sbjct  385  MSNSTNRKTMLGDLLSAKMQPDTLDDFRYGRKNLIVATDVLKEGIDVSACSVVICYNIPK  444

Query  461  NEISMVQARGRARADQSVYAFVAT---EGSRELKRELINEALETLMEQA  506
               S +Q RGRAR   S Y+ + +   +GS   K     +  E +ME+A
Sbjct  445  GFESFIQRRGRARRQNSTYSMMLSTEDDGSTLDKW----QKFEKIMEEA  489


>sp|Q2H0G2|DCL1_CHAGB Dicer-like protein 1 OS=Chaetomium globosum 
(strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / 
NRRL 1970) OX=306901 GN=DCL1 PE=3 SV=2
Length=1607

 Score = 100 bits (250),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 78/226 (35%), Positives = 117/226 (52%), Gaps = 25/226 (11%)

Query  350  KLEMLEKILQRQFSS-SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN  408
            K+ +L +IL+ +F    +  R I+F R R  A SLL  L QQ  ++   +   +L+G G 
Sbjct  461  KVVILLRILRGEFRGVDHKRRCIVFVRQRNVA-SLLTDLLQQPEMRIPGLEPGILVGGGR  519

Query  409  ---SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM  465
               S  +  +T RDQ   I KF+ G LN + ATSVAEEGLDIP CNV++RY L    I  
Sbjct  520  PEASYDNAKVTYRDQVLTIIKFKKGELNCIFATSVAEEGLDIPDCNVIIRYDLNNTLIQY  579

Query  466  VQARGRARADQSVYA-FVATEGSRELKRELINEALETLME---QAVAAVQKM-----DQA  516
            +Q+RGRAR + S+Y   V +E    +K+   N+  E  +    +A+ A +K+     D  
Sbjct  580  IQSRGRARQEGSIYIHMVESENEEHVKKVCQNQESEDALRKFCEALPADRKLTGNNFDME  639

Query  517  EYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQLLCINCMVA  562
             +  K +D +Q  + +  A    R N +Q        L+C+   VA
Sbjct  640  YFLRKEKDQRQYTVPETGA----RLNYKQ-------SLICLAAFVA  674


 Score = 49.3 bits (116),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 103/256 (40%), Gaps = 37/256 (14%)

Query  4    RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHL--ETVDGAK------VVVLVN  55
            R YQ E+   A + +N I  L TG+GKT  AA + +  +  E  D +K         LV+
Sbjct  136  RDYQLELFERA-KTQNTIAVLDTGSGKTLIAALLLRWTIQNELEDRSKRLPKRIAFFLVD  194

Query  56   RVHLVTQHGEEFRRMLDGRWTVTTLSGDM--GPRAGFGHLARCHDL-LICTAELLQMALT  112
            +V LV Q        LD  + +    GDM       F H     ++ ++CTAE+L   LT
Sbjct  195  KVALVFQQHAVLACNLD--YPLEKFCGDMVEDVTQDFWHKTFDENMAIVCTAEILYQCLT  252

Query  113  SPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYL--------ELKLQRAQPLPQVL  164
                  ++ +   +L+V DE HHT K+  Y  I+  +          L++ RA     V 
Sbjct  253  ----HSYIRMDQVNLLVFDEAHHTKKNHPYARIIKDFYAEVKDLNKRLRISRAMTASPV-  307

Query  165  GLTASPGTGGASKLDGAINHVLQLCAN----------LDTWCIMSPQNCCPQLQEHSQQP  214
                 P    + +L+G ++  +   A+          L     +    C P+ +    + 
Sbjct  308  DAQIDPKIARSPELEGLLHSQIATVADPTALHNSSTKLKREVTVEYGKCLPEFETGLNRA  367

Query  215  CKQYNLCHRRSQDPFG  230
             K     HR  Q PF 
Sbjct  368  LKDLVGEHRLFQKPFA  383


>sp|A4RHU9|DCL2_PYRO7 Dicer-like protein 2 OS=Pyricularia oryzae 
(strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 GN=DCL2 
PE=3 SV=3
Length=1485

 Score = 100 bits (248),  Expect = 3e-20, Method: Compositional matrix adjust.
 Identities = 139/523 (27%), Positives = 228/523 (44%), Gaps = 74/523 (14%)

Query  4    RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLE-TVDGAKVVVLVNRVHLVTQ  62
            R+YQ E+   +++ +NII+ + TG+GKT+ A    +  LE T    +V  L   V L  Q
Sbjct  66   RAYQLEMFQASMQ-QNIIVSMDTGSGKTQVAVLRIRAELERTPPEKRVWFLAPTVALCAQ  124

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRA-----GFGHLARCHDLLICTAELLQMALTSPEEE  117
              E  R  +    ++  ++GD    +      +  +     +++CT  +L  AL+     
Sbjct  125  QYEVIRSQIKVANSIV-MTGDDNVDSWSDVQTWDAVLANVRVVVCTYMILFEALS----H  179

Query  118  EHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASK  177
              V +   SL+V+DE H+        +IM ++   +      +P +LGLTASP       
Sbjct  180  AFVTMDSISLLVMDEAHNCTGKFPGRLIMKRFYMPRKSAGDHVPHILGLTASP------V  233

Query  178  LDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQP---CKQYNLCHRRSQDPFGDLLK  234
            +   ++ +  L ++LD+ C   P     +L  +  QP      Y  C  RS   +     
Sbjct  234  MKSDLSSMEDLESSLDSVC-RGPTLQREELFANVHQPTMTVTTYKECDLRSPVQY----T  288

Query  235  KLMDQIHDHLEMPELSRK-FGTQMYEQQVVK-LSEAAALAGLQEQRVYALH----LRRYN  288
            + M+ +H   E  +++   +   +  Q+  K L E   +  L +   Y  +    L+R +
Sbjct  289  RNMNNLHLAFENLDIAEDPYVLHLMGQRTPKSLRELDRI--LTKLDTYTQNQMKALQRKS  346

Query  289  DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG---  345
             +L       AVD+       Y    V K   L A    L  + D +    H A  G   
Sbjct  347  SSLFRELGQWAVDS-------YIYNVVEKVSNLDARSSWLGGWLDDEQRYLHRAIQGINA  399

Query  346  ---------PE--NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQ  394
                     PE  + KL++L +IL+       SP GI+F + R +A  L       Q L 
Sbjct  400  LPVSAAIPAPEMTSIKLQVLLRILR---GYEGSPVGIVFVKERATAGIL------SQLLA  450

Query  395  TV-DIRAQLLIG--AGNSSQSTH-------MTQRDQQEVIQKFQDGTLNLLVATSVAEEG  444
             + DI A+  +G   G S   +        + Q D    ++KF+ G +NLLVATSV EEG
Sbjct  451  IIPDINARYKVGCMVGTSRYMSRKMNIHEVLQQGDDLLALEKFRSGAINLLVATSVLEEG  510

Query  445  LDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFVATEGS  487
            +D+P CN+V+ + +  N  S +Q RGRAR  +S    +  E S
Sbjct  511  IDVPVCNLVICFDMPANLKSFIQRRGRARMRESKLHLMIEEDS  553


>sp|Q9UT23|MPH1_SCHPO ATP-dependent DNA helicase fml1 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=fml1 
PE=1 SV=2
Length=834

 Score = 99.8 bits (247),  Expect = 3e-20, Method: Compositional matrix adjust.
 Identities = 130/538 (24%), Positives = 228/538 (42%), Gaps = 66/538 (12%)

Query  1    MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV  60
            +  R YQ+ ++  AL  +N+++ LPTG GKT  AA V   +L     + +V +     LV
Sbjct  71   VSFRDYQFNIVQKAL-FENVLVALPTGLGKTFIAAVVMMNYLRWFPKSYIVFMAPTKPLV  129

Query  61   TQHGEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
            TQ  E   ++    +     LSG + P        +  ++   T + +   +    +   
Sbjct  130  TQQMEACYKITGIPKSQTAELSGHV-PVTTRNQYYQSRNVFFVTPQTILNDI----KHGI  184

Query  120  VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLD  179
             + T  S +V+DE H +  +  Y V +   L L  +  +    +L L+A+P     +KL+
Sbjct  185  CDRTRISCLVIDEAHRSTGNYAY-VEVVHLLSLSNKNFR----ILALSATP----GNKLE  235

Query  180  GAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQ  239
             AI +V+      D+  I        +++  +     QY    ++  D F   L   +  
Sbjct  236  -AIQNVI------DSLHI-----SRIEIRTENSIDISQY--VQKKEVDFFPVDLSAEITD  281

Query  240  IHDHLEM---PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDT  296
            I D       P L +      Y  Q  K  +  +   +Q ++ +     +   A    D 
Sbjct  282  IRDRFSSILEPMLQKLNKGNYYRIQNAK--DITSFTVVQAKQAFLAMSGQNFPANQKWDI  339

Query  297  VRAVDALA------------ALQDFYHREHVTKTQILCA----ERRLL------ALFDDR  334
            +   DALA             ++ FY +    + +        ++R++       L DD 
Sbjct  340  LNTFDALATFAYPLNLLLNHGIRPFYQKLREVEEECFVGRSGYKKRIINHENYRPLMDDI  399

Query  335  KNELAHLATHGPENPKLEMLEKILQRQFSS--SNSPRGIIFTRTRQSAHSLLLWLQQQQG  392
            +  L   +  G  +PKLE LE+I+   F    +   R +IF   R SA  +L +L    G
Sbjct  400  EILLRDQSFVG--HPKLEHLERIVTEYFEKEQTKDTRIMIFVEIRSSAEEILRFL----G  453

Query  393  LQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNV  452
                ++R  + IG     ++  M+Q+ Q E +++FQ G +N L+ATS+ EEGLDI   ++
Sbjct  454  KFYPNVRPAIFIGQSAVRKAAGMSQKLQNETVKQFQKGEVNTLIATSIGEEGLDIGEVDM  513

Query  453  VVRYGLLTNEISMVQARGRARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAA  509
            ++ Y    + I M+Q  GR    +  Y + + T G  E K E   +A  TL +  V+ 
Sbjct  514  IICYDASASPIRMLQRMGRTGRKRKGYIYMLLTRGKEEAKWERAKDAYRTLQDNIVSG  571


>sp|Q09884|DCR1_SCHPO Protein Dicer OS=Schizosaccharomyces pombe 
(strain 972 / ATCC 24843) OX=284812 GN=dcr1 PE=1 SV=1
Length=1374

 Score = 99.8 bits (247),  Expect = 4e-20, Method: Compositional matrix adjust.
 Identities = 62/171 (36%), Positives = 95/171 (56%), Gaps = 16/171 (9%)

Query  326  RLLALFDDRKNELAHLATHGPENP---------KLEMLEKILQRQFSSSNSPRGIIFTRT  376
            RL    +D KN     + +GP  P         K+  L ++L+  +  S+S R +IF   
Sbjct  313  RLKIFVEDWKNN--KYSDNGPRIPVFDSTDVTDKVFKLLELLKATYRKSDSVRTVIFVER  370

Query  377  RQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH-MTQRDQQEVIQKFQDGTLNLL  435
            + +A +L L+++    L   +IRA   IG G S Q    MT R Q++ + KF+ G  N+L
Sbjct  371  KATAFTLSLFMKT---LNLPNIRAHSFIGHGPSDQGEFSMTFRRQKDTLHKFKTGKYNVL  427

Query  436  VATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVY-AFVATE  485
            +AT+VAEEG+D+P CN+V+R+ +       VQ+RGRARA  S +  F+ TE
Sbjct  428  IATAVAEEGIDVPSCNLVIRFNICRTVTQYVQSRGRARAMASKFLIFLNTE  478


 Score = 67.4 bits (163),  Expect = 3e-10, Method: Compositional matrix adjust.
 Identities = 55/192 (29%), Positives = 91/192 (47%), Gaps = 23/192 (12%)

Query  3    LRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLE--------TVDGAKV-VVL  53
            LR YQ +V   A   +N ++ + TGAGKT  A  + K+ LE         ++  K+ V L
Sbjct  12   LRKYQQDVYNIA-SKQNTLLVMRTGAGKTLLAVKLIKQKLEEQILIQESNLEHKKISVFL  70

Query  54   VNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAG---FGHLARCHDLLICTAELLQMA  110
            VN+V LV Q  E  R  L  +  V    G++          ++   +++++ TA+L  + 
Sbjct  71   VNKVPLVFQQAEYIRSQLPAK--VGMFYGELSIEMSEQLLTNIILKYNVIVITADLFYLF  128

Query  111  LTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLE----LKLQRAQPLPQVLGL  166
            L        + +   +LI+ DECHH   +  Y  IM+ +      +  ++   LP++ G+
Sbjct  129  LA----RGFLSINDLNLIIFDECHHAIGNDAYARIMNDFYHRAKAVLSKKHFTLPRIFGM  184

Query  167  TASPGTGGASKL  178
            TASP TG    L
Sbjct  185  TASPFTGKKGNL  196


>sp|A4RKC3|DCL1_PYRO7 Dicer-like protein 1 OS=Pyricularia oryzae 
(strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 GN=DCL1 
PE=3 SV=2
Length=1591

 Score = 99.4 bits (246),  Expect = 5e-20, Method: Compositional matrix adjust.
 Identities = 56/149 (38%), Positives = 86/149 (58%), Gaps = 4/149 (3%)

Query  351  LEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQT--VDIRAQLLIGAGN  408
            +E+L +    Q S+ N+ + I+F + R +A  LL  L +Q  ++T   D++   LIGAG 
Sbjct  441  IEILAECFS-QASAGNAIQCIVFVKRRDTA-VLLNALCEQAEIRTKIPDLKGAFLIGAGR  498

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
               +   T R Q++ + +F+DG +N L ATS+AEEGLDIP CNVV+R+ L    I  +Q+
Sbjct  499  GGNAAFTTTRQQEQTVSRFRDGEINCLFATSIAEEGLDIPGCNVVIRFDLHGTTIQYIQS  558

Query  469  RGRARADQSVYAFVATEGSRELKRELINE  497
            RGRAR   S +  +   G+ E  R    +
Sbjct  559  RGRARMRNSWFIHMTEFGNPEHNRRWFQD  587


 Score = 72.0 bits (175),  Expect = 1e-11, Method: Compositional matrix adjust.
 Identities = 59/180 (33%), Positives = 88/180 (49%), Gaps = 21/180 (12%)

Query  4    RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK--------VVVLVN  55
            R YQ E+   A + KN I  L TG GKT  A  + +  +E   GA+           LV+
Sbjct  109  REYQIELFERAKQ-KNTIAVLDTGTGKTLIAILLIRHIIELELGARWQGREKRITFFLVD  167

Query  56   RVHLVTQHGEEFRRMLDGRWTVTTLSGDM-----GPRAGFGHLARCHDLLICTAELLQMA  110
            +V LV Q  +  R  LD  + VT L GD        +  F  L +  ++++CTAE+L   
Sbjct  168  KVALVRQQTDHIRANLD--FPVTGLHGDTVRNLWYSKEYFEKLLQEQEVVVCTAEILYRC  225

Query  111  LTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASP  170
            L       ++ ++  SL+V DE HH  K+ VY  I+  +  L  +  Q  P++ G+TASP
Sbjct  226  L----HRSYLNISQVSLVVFDEAHHAKKNHVYARIIKDFY-LMEEDCQKRPRIFGMTASP  280


>sp|Q5N870|DCL3A_ORYSJ Endoribonuclease Dicer homolog 3a OS=Oryza 
sativa subsp. japonica OX=39947 GN=DCL3A PE=2 SV=1
Length=1651

 Score = 97.1 bits (240),  Expect = 3e-19, Method: Compositional matrix adjust.
 Identities = 129/526 (25%), Positives = 221/526 (42%), Gaps = 69/526 (13%)

Query  4    RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLE---TVDGAKVVV-LVNRVHL  59
            R YQ +V   A+  +N I  L TGAGKT  A  + K   +   T +  KV++ L   V L
Sbjct  33   RRYQLDVYEVAMR-RNTIAMLDTGAGKTMIAVMLIKEFGKINRTKNAGKVIIFLAPTVQL  91

Query  60   VTQHGEEFRRMLDGR----WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE  115
            VTQ  E      D      +    +    GPR  +      + +++ T ++   AL    
Sbjct  92   VTQQCEVIEIHTDFEVEQYYGAKGVDQWTGPR--WQEQISKYQVMVMTPQVFLQAL----  145

Query  116  EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASP--GTG  173
                + L + SL++ DECHH   +  Y  IM ++      +++  P V G+TASP    G
Sbjct  146  RNAFLILDMVSLMIFDECHHATGNHPYTRIMKEFY----HKSEHKPSVFGMTASPVIRKG  201

Query  174  GASKLDGAINHVLQLCA--NLDTWCIMSPQN------CCPQLQEHSQQPCKQYN---LCH  222
             +S LD       Q C   NL    I +  +      C P  +E     C+ Y+   +C 
Sbjct  202  ISSHLDCE----GQFCELENLLDAKIYTVSDREEIEFCVPSAKEM----CRYYDSKPVCF  253

Query  223  RRSQDPFG-----------DLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAAL  271
                +  G           +L  K  D   D  ++ + S++  ++   +    L +   +
Sbjct  254  EDLSEELGVLCSKYDALITELQNKRSDMYKDADDITKESKRRLSKSIAKICYCLDDVGLI  313

Query  272  AGLQEQRVYALHLRRYNDALLIHDTVRAVDA--------LAALQDFYHREHVTKTQILCA  323
               +  ++    + R  +   + + V A D         L A     H +   +   L  
Sbjct  314  CASEATKIC---IERGQEKGWLKEVVDATDQQTDANGSRLFAENSALHMKFFEEALHLID  370

Query  324  ER--RLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAH  381
            +R  + + +  + ++     A  G  +PKL  L +I    FS+S   R +IF   + +A 
Sbjct  371  KRLQQGIDMLLNSESGCVEAAKTGYISPKLYELIQIFH-SFSNSRHARCLIFVDRKITAR  429

Query  382  SLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVA  441
             +   +++   L    +    L G  +S  +  +T + Q++ +  F+ G +NLL  T VA
Sbjct  430  VIDRMIKKIGHLAHFTV--SFLTGGRSSVDA--LTPKMQKDTLDSFRSGKVNLLFTTDVA  485

Query  442  EEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFVATEGS  487
            EEG+ +P C+ V+R+ L     S VQ+RGRAR + S Y  +   G+
Sbjct  486  EEGIHVPECSCVIRFDLPRTTRSYVQSRGRARQEDSQYILMIERGN  531


>sp|A1D9Z6|DCL2_NEOFI Dicer-like protein 2 OS=Neosartorya fischeri 
(strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 
/ JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dcl2 PE=3 SV=1
Length=1388

 Score = 96.3 bits (238),  Expect = 4e-19, Method: Compositional matrix adjust.
 Identities = 144/582 (25%), Positives = 243/582 (42%), Gaps = 80/582 (14%)

Query  4    RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVV-VLVNRVHLVTQ  62
            R+YQ E++  +++ +NII+ + TG+GKT  A    K  L+     K+V  L   V L  Q
Sbjct  17   RNYQLEMLEASMK-ENIIVAMDTGSGKTHIAVLRIKAELDICPPDKLVWFLAPTVALCIQ  75

Query  63   HGEEFRRMLDGRWTVTTLSGD----MGPRAGFGHLARCHDLLICTAELLQMALTSPEEEE  118
              E     L    T T    D       ++ +  +   + +++ T  +L  AL+      
Sbjct  76   QHEVIASNLPAVRTRTLTGLDKVELWTEQSIWDAVLNGYRVIVSTHAVLADALS----HG  131

Query  119  HVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQP--LPQVLGLTASPGTGGAS  176
             V+++  +L++ DE HH  +    N IM  +    L ++ P  +P+++GLTASP      
Sbjct  132  FVKMSRLALLIFDEAHHCTRRHAANKIMRDFYHPTLTKSGPGAVPRIMGLTASPVVRS--  189

Query  177  KLDGAINH--VLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLK  234
                  NH  +L + +NLD  C  +P+    +L + + +P  Q         DP G    
Sbjct  190  ------NHQELLTVESNLDAVC-RTPRVHRQELVKFTHRPHLQQ--IWYTPTDPAG---F  237

Query  235  KLMDQIHDHLEMPELSRKFGTQMYEQQVVK--LSEAAALAGLQEQRVYAL-HLRRYND--  289
            K   Q    L     +   G   Y Q++ K  L + A    L   + Y    LRR+ D  
Sbjct  238  KSASQTLGALYHAWETLDIGDDPYIQRLRKSPLDDTALKKALLTGKTYCREQLRRFVDRS  297

Query  290  ------------ALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNE  337
                           I+ +++       L D     +++       +  L+         
Sbjct  298  RHIFEELGEWAAEYYIYASIKQ------LGDRVRNSYMSGDWDEAEKAYLVDFLSKIPAS  351

Query  338  LAHLATHGPEN----PKLE----MLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQ  389
               LA + P +    PK E     L+ + +R+FS      G+IF + R +  ++   L  
Sbjct  352  EIQLALNDPGSFRISPKFESLLNFLDSLDEREFS------GLIFVKQRATVSAMTSLLSV  405

Query  390  QQGLQTVDIRAQLLIGAGNSSQSTH-----MTQRDQQEVIQKFQDGTLNLLVATSVAEEG  444
                +    R    +G  N S S       +  + Q++ +  F+ G  NL++AT V EEG
Sbjct  406  HPCTRE-RFRCAAYVGWSNGSASKDILGDLLNMQLQRDTLDDFRSGRKNLIIATDVLEEG  464

Query  445  LDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYA--FVATEGSRELKR--ELINEALE  500
            +DI  C+VVV Y    N  S VQ RGRAR  QS +A  F   + S ++ +  +L    +E
Sbjct  465  IDISACSVVVCYDKPPNLKSFVQRRGRARRKQSTFAIMFPTDDASADVSKWQDLEQAMIE  524

Query  501  TLME-----QAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQA  537
               +     Q+V+A++ +D+   +    +   A LT   A A
Sbjct  525  AYQDDERQLQSVSALESLDEEVMERLTVESTSAVLTADMAMA  566


>sp|P34529|DCR1_CAEEL Endoribonuclease dcr-1 OS=Caenorhabditis 
elegans OX=6239 GN=dcr-1 PE=1 SV=3
Length=1910

 Score = 94.4 bits (233),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 129/546 (24%), Positives = 231/546 (42%), Gaps = 116/546 (21%)

Query  4    RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRH----LETVD--GAKVVVLVNRV  57
            R YQ E++  A + KN I+ L TG+GKT  A  + K +       +D  G +   +V +V
Sbjct  14   RDYQVELLDKATK-KNTIVQLGTGSGKTFIAVLLLKEYGVQLFAPLDQGGKRAFFVVEKV  72

Query  58   HLVTQ---HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP  114
            +LV Q   H E       G+    T SG    +       + H +++ TA+ L   +   
Sbjct  73   NLVEQQAIHIEVHTSFKVGQVHGQTSSGLWDSKEQCDQFMKRHHVVVITAQCLLDLI---  129

Query  115  EEEEHVELTVFSLIVVDECHHT-HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTG  173
                ++++    +++ DECHH       Y  IM  Y  LK  + +P+P+VLGLTAS    
Sbjct  130  -RHAYLKIEDMCVLIFDECHHALGSQHPYRSIMVDYKLLK--KDKPVPRVLGLTASLIKA  186

Query  174  GAS---------KLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRR  224
              +         KL+ A++ V++  ++L +            L ++  +P +   +C   
Sbjct  187  KVAPEKLMEQLKKLESAMDSVIETASDLVS------------LSKYGAKPYEVVIICKDF  234

Query  225  SQDPFG----DLLKKLMDQ----------------------IHDHLEMPE-LSRKFG---  254
                 G    D + ++ D+                      I D L+    + R+ G   
Sbjct  235  EIGCLGIPNFDTVIEIFDETVAFVNTTTEFHPDLDLDPRRPIKDSLKTTRAVFRQLGPWA  294

Query  255  ----TQMYEQQVVKLSEAAALAG-----LQEQRVYALHLRRYNDALLIHDTVRAVDALAA  305
                 Q++E+++ K+ ++  L       L   +   + ++R     L+   ++ + ++ A
Sbjct  295  AWRTAQVWEKELGKIIKSQVLPDKTLRFLNMAKTSMITIKR-----LLEPEMKKIKSIEA  349

Query  306  LQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSS  365
            L+ +               +R++ LF+        L T  PE  K  M       +   +
Sbjct  350  LRPY-------------VPQRVIRLFE-------ILETFNPEFQKERM-------KLEKA  382

Query  366  NSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD--IRAQLLIGAGN----SSQSTHMTQRD  419
                 IIF   R  A+SLLL ++  +  +     +    ++GA      SS S  + +R 
Sbjct  383  EHLSAIIFVDQRYIAYSLLLMMRHIKSWEPKFKFVNPDYVVGASGRNLASSDSQGLHKR-  441

Query  420  QQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVY  479
            Q EV+++F    +N L+ATSV EEG+D+  CN+V+++    +  S VQ++GRAR   S Y
Sbjct  442  QTEVLRRFHRNEINCLIATSVLEEGVDVKQCNLVIKFDRPLDMRSYVQSKGRARRAGSRY  501

Query  480  AFVATE  485
                 E
Sbjct  502  VITVEE  507


>sp|Q2VF19|DCL1_CRYPA Dicer-like protein 1 OS=Cryphonectria parasitica 
OX=5116 GN=DCL-1 PE=3 SV=1
Length=1548

 Score = 89.7 bits (221),  Expect = 4e-17, Method: Compositional matrix adjust.
 Identities = 51/143 (36%), Positives = 78/143 (55%), Gaps = 2/143 (1%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            KL+ L K+L+  F+ S S R I+F   R +A  LL    +    +   ++   L+GA   
Sbjct  425  KLKTLSKLLEEYFTDS-SIRCIVFVERRWTA-KLLTDFFESHAAEIPGLKVGSLMGANAE  482

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
              S+  + R+Q   I  F+ G  N + ATSVAEEGLDIP CN+++R+ +    I  +Q+R
Sbjct  483  GGSSQTSFREQIRTILSFKKGNTNCIFATSVAEEGLDIPDCNLIIRFDICKTMIQYIQSR  542

Query  470  GRARADQSVYAFVATEGSRELKR  492
            GRAR   S Y  +   G+ + +R
Sbjct  543  GRARQADSTYIHLIEGGNGDHRR  565


 Score = 60.1 bits (144),  Expect = 7e-08, Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 92/208 (44%), Gaps = 25/208 (12%)

Query  4    RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHL--ETVDGAK------VVVLVN  55
            R YQ E+   A + +N I  L TG+GKT  AA +    +  E  D AK         LV 
Sbjct  100  RDYQMELFERAKQ-QNTIAVLDTGSGKTLIAALLLDHTVNQELEDRAKGLPRRIAFFLVE  158

Query  56   RVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRA---GFGHLARC-HDLLICTAELLQMAL  111
            +V L  Q        L    +V   SG+        GF       H++++CTAE+L   L
Sbjct  159  KVALAFQQHAVLECNLAH--SVAVFSGESIKNTWTKGFWETQLADHEVIVCTAEILNQCL  216

Query  112  TSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPG  171
                +  ++ +   +L+V DE HHT K+  Y  I+  Y      R   LP++ G+TASP 
Sbjct  217  ----QYAYIRIDQINLLVFDEAHHTKKNHPYARIIKDYYASGKDRGLRLPRIFGMTASPV  272

Query  172  TG------GASKLDGAINHVLQLCANLD  193
                     A +L+G ++  +   A+ D
Sbjct  273  DALIDVRQAAIELEGLLHSRIATTADPD  300


>sp|A4RN08|MPH1_PYRO7 ATP-dependent DNA helicase MPH1 OS=Pyricularia 
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 
GN=MPH1 PE=3 SV=1
Length=1102

 Score = 89.7 bits (221),  Expect = 4e-17, Method: Compositional matrix adjust.
 Identities = 125/497 (25%), Positives = 210/497 (42%), Gaps = 61/497 (12%)

Query  3    LRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ  62
            +R YQ+ ++   L   N ++ LPTG GKT  AA V          A++V +     L +Q
Sbjct  140  IRDYQFSIVKNGL-FNNTLVALPTGLGKTFIAATVILNFFRWTRNAQMVFVAPTKPLASQ  198

Query  63   HGEEFRRMLD-GRWTVTTLSGDMGP--RAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
              E    +    R   T L+G+  P  R       R   L   T + L   L+    + +
Sbjct  199  QVEACLNIAGIPRSQSTLLTGETKPVLREAEWEGKR---LFFMTPQTLMNDLS----KGY  251

Query  120  VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGT---GGAS  176
             +     L+VVDE H    D  Y     + +E  ++R     +VL LTA+PG+   G   
Sbjct  252  ADPKRIVLLVVDEAHRATGDYAY----VKVIEF-IRRFSKSFRVLALTATPGSTVEGVQD  306

Query  177  KLDG-AINHV-LQLCANLDTW----------CIMSPQNCCPQLQEHSQQPCK--QYNLCH  222
             +D   ++HV ++   ++D             ++ P +   ++ E   Q  K     +  
Sbjct  307  VIDNLGVSHVEIRTEESIDIRNYVHSREIDRVVLEPSDEMLRISELFSQALKPLHSKISQ  366

Query  223  RR---SQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRV  279
            ++    +DP       L+    D ++ P    +F  Q  +  ++      A+  + +   
Sbjct  367  QKIYIGRDPMSITTFGLLKARQDWMKGPG---RFANQGLKMMLM------AIFTILQSLA  417

Query  280  YALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFD--DRKNE  337
            +A+ L  Y+     +D + A    +  +D   +    K Q L  E+    + D   +  +
Sbjct  418  HAIKLLNYHGIRPFYDNLVAF--RSETEDKGQKGSKYKRQ-LIGEQSFQEMMDLASKWLK  474

Query  338  LAHLATHGPENPKLEMLEKILQRQF---SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQ  394
            +   A H    PKL  L   L   F      +S R I+F+  R SA  +   L   + + 
Sbjct  475  IDGFAGH----PKLTHLCDNLLNYFMDAGEGSSTRVIVFSEYRDSAEEITRVLNVHKPM-  529

Query  395  TVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV  454
               I A L +G  +S +S  M Q+ Q E I KF+DG  N+LVATS+ EEGLDI   ++++
Sbjct  530  ---ISASLFVGQADSKKSEGMKQKQQIETIAKFRDGIFNVLVATSIGEEGLDIGQVDLII  586

Query  455  RYGLLTNEISMVQARGR  471
             Y   ++ I M+Q  GR
Sbjct  587  CYDASSSPIRMLQRMGR  603


>sp|Q2UNX5|DCL2_ASPOR Dicer-like protein 2 OS=Aspergillus oryzae 
(strain ATCC 42149 / RIB 40) OX=510516 GN=dcl2 PE=3 SV=1
Length=1377

 Score = 89.4 bits (220),  Expect = 5e-17, Method: Compositional matrix adjust.
 Identities = 156/593 (26%), Positives = 239/593 (40%), Gaps = 105/593 (18%)

Query  4    RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVV-VLVNRVHLVTQ  62
            R YQ+E+   +L+ +NII+ + TG GKT+ A       LE     K+   L   V L  Q
Sbjct  17   RQYQYEMFEASLK-ENIIVAMDTGTGKTQIALLRIAHQLEGGGPRKLTWFLTPTVALCLQ  75

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAG----FGHLARCHDLLICTAELLQMALTSPEEEE  118
              E  R  L      T    D   R      +  L +   +++ T  +L  ALT      
Sbjct  76   QYEVIRSHLPAVRACTITGLDKVERWKSQYIWDELLKDKQVVVSTHAVLFEALT----HG  131

Query  119  HVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQR--AQPLPQVLGLTASPGTGGAS  176
             V ++   L++ DE HH  +    N+IM  +    L++     +P +LGLTASP     S
Sbjct  132  FVRISQLGLLIFDEAHHCMRRHPANMIMLDFYHPTLRKHGRDSVPCILGLTASPVVRSKS  191

Query  177  KLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKL  236
            +       +  L +NLD+ C  +PQ    +L  ++ +P     +C    + P G  L+ L
Sbjct  192  Q------EMKTLESNLDSIC-KTPQVHKQELTTYAHRPELLPIICKAIDEGPGGRALQAL  244

Query  237  ------MDQIHDHLEMPELSRKF-GTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND  289
                   D   D   +P+      G+  Y+  +V+ +         EQ      ++R+ D
Sbjct  245  EHAWDTADIDGDPDAIPQNGSLLNGSGEYKALMVRKTLC------NEQ------IKRFVD  292

Query  290  ALLIHDTVRAVDALAAL----QDFYHREHVTKTQILCAERRLLALFDDRK-----NELAH  340
                    R+    A L     D+Y    V + +    ++ L   ++D +     N L+ 
Sbjct  293  --------RSRHIFAELGEWAADYYICTSVEQLRTTIRDQSLTMDWEDEERAYLSNFLSK  344

Query  341  LATH-------GPEN----PKL----EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLL  385
            L           P N    PKL      L+K    +FS      G+IF + R +   L  
Sbjct  345  LPVAEVQANLADPNNFTMSPKLAALINFLDKFDDPEFS------GLIFVKQRVTVSVLAR  398

Query  386  WLQQQQGLQTVD-IRAQLLIGAGNSSQSTHMT-----QRDQQEVIQKFQDGTLNLLVATS  439
             L      QT D  R    +G    S    M       + Q+  +  F+ G  NL+V TS
Sbjct  399  LLSLHP--QTRDRFRCAAYVGMSVGSCRQDMVGDWHNAKKQRGTMDDFRSGRKNLIVTTS  456

Query  440  VAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYA--FVATEGSRELKRELINE  497
            V EEG+D+  C VVV +    N  S +Q RGRAR  +S YA  F   +   +L+R  I  
Sbjct  457  VLEEGIDVTACRVVVCFDKPANLKSFIQRRGRARQQKSTYAIMFSTADEHGDLRRWQI--  514

Query  498  ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVE  550
                 +EQA+          YQ + R L++A      AQ A  EN  +   VE
Sbjct  515  -----LEQAMVEA-------YQDEERRLREA-----EAQEAVDENVPEMITVE  550


>sp|Q0CWI2|MPH1_ASPTN ATP-dependent DNA helicase mph1 OS=Aspergillus 
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=mph1 
PE=3 SV=2
Length=1100

 Score = 88.6 bits (218),  Expect = 9e-17, Method: Compositional matrix adjust.
 Identities = 136/510 (27%), Positives = 215/510 (42%), Gaps = 81/510 (16%)

Query  4    RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQH  63
            R YQ+ +    L   N+++ LPTG GKT  AA +          A++V +     LV Q 
Sbjct  311  RDYQFNITQKGL-FHNLLVALPTGLGKTFIAATIMLNWFRWTRDAQIVFVAPTKPLVAQQ  369

Query  64   GEE-FRRMLDGRWTVTTLSGDMGP--RAGFGHLARCHDLLICT-AELLQMALTSPEEEEH  119
                F      R   T L+G+  P  RA      R   +   T    L+  +  P+    
Sbjct  370  VSACFGVAGIPRSQTTMLTGEAAPGIRAQEWQDKRVFFMTPQTLINDLKSGIADPKR---  426

Query  120  VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASK--  177
                   L+VVDE H       Y V + ++L    Q  +    VL LTA+PG+   S   
Sbjct  427  -----IVLLVVDEAHRATGGYAY-VEVVKFLRRYNQSFR----VLALTATPGSTVESVQA  476

Query  178  -LDG-AINHV-LQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLK  234
             +DG  I+ V ++   +LD    +  +N   Q  ++S++      LC         DLL 
Sbjct  477  VIDGLEISKVEIRTEQSLDIREYVHARNTEVQTFKNSEEMV----LCM--------DLLS  524

Query  235  KLMDQIHDHLEM--------PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR  286
            K +  + D L          P     +G     QQ + LS+A         R  +  L+ 
Sbjct  525  KTLQPLVDQLRTLNAYWGRDPMALTAYGLTKSRQQWM-LSDAG--------RNSSFGLKG  575

Query  287  YNDALL--IHDTVRAVDALA--ALQDFY----HREHVTKTQILCAERRLLALFDDRKNEL  338
              +A+   +      +D L    +  FY    H +  T  Q     +R +   +  K  +
Sbjct  576  KVNAIFTVLASLAHGIDLLKYHGITPFYRHLLHFQGNTDGQKGGKYQRQIVQDEHFKKLM  635

Query  339  AHLA--THGPE---NPKLEMLEKILQRQF------------SSSNSPRGIIFTRTRQSAH  381
             HL+  T  PE   +PKLE L++++   F            +S ++ R +IF   R SA 
Sbjct  636  NHLSPWTKNPEFIGHPKLEYLKQVVLNHFMDAGEGSAGAEGASQSTTRVMIFVHFRDSAE  695

Query  382  SLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVA  441
             +   L++ + +    IR Q+ +G  ++  S  M Q+ Q  V+QKF+ GT N +VATS+ 
Sbjct  696  EVARVLKRYEPM----IRPQVFVGQASAKGSDGMNQKTQLGVVQKFKQGTYNTIVATSIG  751

Query  442  EEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
            EEGLDI   +++V Y    + I M+Q  GR
Sbjct  752  EEGLDIGEVDLIVCYDSSASPIRMLQRMGR  781


>sp|Q2URJ5|MPH1_ASPOR ATP-dependent DNA helicase mph1 OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=mph1 
PE=3 SV=2
Length=1129

 Score = 88.2 bits (217),  Expect = 1e-16, Method: Compositional matrix adjust.
 Identities = 135/509 (27%), Positives = 216/509 (42%), Gaps = 79/509 (16%)

Query  4    RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQH  63
            R YQ+ +    L   N+++ LPTG GKT  AA +        + A+++ +     LV Q 
Sbjct  325  RDYQFNIAQKGL-FHNLLVALPTGLGKTFIAATIMLNWFRWTESAQIIFVAPTKPLVAQQ  383

Query  64   GEE-FRRMLDGRWTVTTLSGDMGP--RAGFGHLARCHDLLICT-AELLQMALTSPEEEEH  119
                F      R   T L+G+  P  RA      R   +   T    L+  +  P+    
Sbjct  384  ISACFGIAGIPRSQTTMLTGEAAPGIRAEEWQNKRVFFMTPQTLINDLKSGIADPKR---  440

Query  120  VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASK--  177
                   L+VVDE H       Y V + ++L    Q  +    VL LTA+PG+   S   
Sbjct  441  -----IVLLVVDEAHRATGGYAY-VEVVKFLRRYNQSFR----VLALTATPGSTVESVQA  490

Query  178  -LDG-AINHV-LQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLK  234
             +DG  I  V ++   +LD    +  +N   Q  ++S++      LC         DLL 
Sbjct  491  VIDGLDIARVEIRTEQSLDIREYVHSRNTEVQTFKNSEEMV----LCM--------DLLS  538

Query  235  KLMDQIHDHLEM--------PELSRKFG-TQMYEQQVVKLSEAAALAGLQEQRVYALHLR  285
            K +  + D L          P +   FG T+  +Q +   +   A  GL+  +V A+   
Sbjct  539  KTLQPLVDQLRTLNAYWGRDPMMLTAFGLTKSRQQWMASDAGRNAHFGLK-GKVNAIFT-  596

Query  286  RYNDALLIHDTVRAVDALA--ALQDFY----HREHVTKTQILCAERRLLALFDDRKNELA  339
                  ++     A+D L    +  FY    H +  T+ Q     +R +   +  K  + 
Sbjct  597  ------VLASLAHAIDLLKYHGITPFYRHLLHFQSNTEGQKGGKYQRQVVQDESFKKLIN  650

Query  340  HLA--THGPE---NPKLEMLEKILQRQF------------SSSNSPRGIIFTRTRQSAHS  382
            HL   T  PE   +PKLE L+ ++   F             S +S R +IF   R SA  
Sbjct  651  HLQPWTKNPEFIGHPKLEYLKSVVLNHFMDAGEGSNGEASDSQSSTRIMIFVHFRDSAEE  710

Query  383  LLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAE  442
            +   L++ + +    IR  + +G  ++  S  M Q+ Q +++QKF+ GT N +VATS+ E
Sbjct  711  VTRVLKRYEPM----IRPHVFVGQSSAKGSEGMGQKTQLDIVQKFKKGTYNTIVATSIGE  766

Query  443  EGLDIPHCNVVVRYGLLTNEISMVQARGR  471
            EGLDI   +++V Y    + I M+Q  GR
Sbjct  767  EGLDIGEVDLIVCYDSSASPIRMLQRMGR  795


>sp|Q0CEI2|DCL2_ASPTN Dicer-like protein 2 OS=Aspergillus terreus 
(strain NIH 2624 / FGSC A1156) OX=341663 GN=dcl2 PE=3 SV=2
Length=1377

 Score = 87.4 bits (215),  Expect = 2e-16, Method: Compositional matrix adjust.
 Identities = 128/510 (25%), Positives = 211/510 (41%), Gaps = 56/510 (11%)

Query  4    RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVV-VLVNRVHLVTQ  62
            R+YQ E+   +L+ +NII+ + TG+GKT  A       LET    K++  L   V L  Q
Sbjct  17   RNYQTEMFEASLQ-ENIIVAMDTGSGKTHVALLRIMNELETRRPQKLIWFLAPTVALCFQ  75

Query  63   HGEEFRRMLDGRWTVTTLSGD----MGPRAGFGHLARCHDLLICTAELLQMALTSPEEEE  118
              +   + L    + T    D       +A +  + +   +++ T  +L  A+++     
Sbjct  76   QHDVITKNLPAVKSRTLTGQDKVELWTEQAIWDAILKDMQVVVSTHAVLADAMSN----G  131

Query  119  HVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQP--LPQVLGLTASPGTGGAS  176
             V ++   L++ DE HH  +    N IM  +    L +  P  +P +LGLTASP     S
Sbjct  132  FVRVSQLGLLIFDEAHHCMRRHPANRIMQDFYHPTLVKQGPDAVPGILGLTASPVVRTNS  191

Query  177  KLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQP-CKQYNLCHRRSQDPFGDLLKK  235
            +    I       +N++  C  +P+    +L  H+ +P  +Q         DP     + 
Sbjct  192  QELSMIE------SNMNAIC-KTPRAHRQELLTHTHRPHLQQIWYTPVNIDDPTSGT-RT  243

Query  236  LMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDAL--LI  293
            L   IH    +          + +   VK    +   G   Q+         N++L   +
Sbjct  244  LRALIHAWETI---------DLEDDPYVKQLRRSTFDGKALQKALLTRKTYCNESLRRFV  294

Query  294  HDTVRAVDALA--ALQDFYH------REHVTKTQILC----AERRLLALFDDRKNELAHL  341
              +      L   A+  F H      RE +  + ++      E+  LA F      +   
Sbjct  295  ERSCHIFQELGGWAVDYFIHASIRRLREKIDDSALMLDWDNEEKEYLASFLSNIATIQSD  354

Query  342  ATHGPEN----PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD  397
                PE+    PKLE L   L     S+ S  G+IF + R +  ++L  L     L    
Sbjct  355  PPRRPEDFIPSPKLEALISFLSSTDDSTFS--GLIFAKQRATV-TVLATLLSVHPLTKDR  411

Query  398  IRAQLLIG---AGNSSQ--STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNV  452
             R    +G    GN        ++ + Q++ + +F+ G  NL+VAT V EEG+DI  C+V
Sbjct  412  FRCAAFVGWSGGGNRKDLIGELLSMQMQRDTLSEFRSGQKNLIVATDVLEEGIDISACSV  471

Query  453  VVRYGLLTNEISMVQARGRARADQSVYAFV  482
            V+ Y    N  S VQ RGRAR  +S +A +
Sbjct  472  VICYDKPANVKSFVQRRGRARRKESTFAIL  501


>sp|Q8R418|DICER_MOUSE Endoribonuclease Dicer OS=Mus musculus 
OX=10090 GN=Dicer1 PE=1 SV=3
Length=1916

 Score = 86.3 bits (212),  Expect = 6e-16, Method: Compositional matrix adjust.
 Identities = 58/164 (35%), Positives = 90/164 (55%), Gaps = 9/164 (5%)

Query  370  GIIFTRTRQSAHSLLLWLQQ--QQGLQTVDIRAQLLIGAG---NSSQSTHMTQ--RDQQE  422
            GIIF   R +A  L   +++  +Q  +   I +  + G G   N  +S  M    R Q+E
Sbjct  444  GIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRSKQMEAEFRKQEE  503

Query  423  VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFV  482
            V++KF+    NLL+ATSV EEG+DIP CN+VVR+ L T   S VQ++GRARA  S Y  +
Sbjct  504  VLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYVML  563

Query  483  A-TEGSRELKREL-INEALETLMEQAVAAVQKMDQAEYQAKIRD  524
            A T+  +  + +L   +A+E ++    +      +A+  A + D
Sbjct  564  ADTDKIKSFEEDLKTYKAIEKILRNKCSKSADGAEADVHAGVDD  607


 Score = 48.1 bits (113),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 52/176 (30%), Positives = 77/176 (44%), Gaps = 22/176 (13%)

Query  4    RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG------AKVVVLVNRV  57
            R YQ E++  AL+  N I+ L TG+GKT  A  + K     + G       + V LVN  
Sbjct  45   RKYQVELLEAALD-HNTIVCLNTGSGKTFIAVLLTKELAHQIRGDLNPHAKRTVFLVNSA  103

Query  58   HLVTQHGEEFRRMLD---GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP  114
            + V Q     R   D   G ++   ++             + H +LI T  +    L   
Sbjct  104  NQVAQQVSAVRTHSDLKVGEYSDLEVNASWTKERWSQEFTK-HQVLIMTCYVALTVL---  159

Query  115  EEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQP-LPQVLGLTAS  169
             +  ++ L+  +L+V DECH    D  Y  IM      KL  + P  P++LGLTAS
Sbjct  160  -KNGYLSLSDINLLVFDECHLAILDHPYREIM------KLCESCPSCPRILGLTAS  208


>sp|A1D4V5|MPH1_NEOFI ATP-dependent DNA helicase mph1 OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / 
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=mph1 
PE=3 SV=1
Length=1111

 Score = 85.9 bits (211),  Expect = 7e-16, Method: Compositional matrix adjust.
 Identities = 131/503 (26%), Positives = 213/503 (42%), Gaps = 67/503 (13%)

Query  4    RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQH  63
            R YQ+ +    L   N+++ LPTG GKT  AA +          A+++ +     LV Q 
Sbjct  300  RDYQFNIAQRGL-FHNLLVALPTGLGKTFIAATIMLNWYRWTKSAQIIFVAPTKPLVAQQ  358

Query  64   GEE-FRRMLDGRWTVTTLSGDMGP--RAGFGHLARCHDLLICT-AELLQMALTSPEEEEH  119
                F+     R   T L+G+  P  RA      R   +   T    L+  +  P+    
Sbjct  359  ISACFQVAGIPRSQTTMLTGEAAPGIRAEEWKSKRVFFMTPQTLVNDLKSGIADPKR---  415

Query  120  VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASK--  177
                   L+VVDE H       Y  ++       L+R     +VL LTA+PG+   S   
Sbjct  416  -----IVLLVVDEAHRATGGYAYVEVVK-----FLKRYNKSFRVLALTATPGSTVESVQA  465

Query  178  -LDG-AINHV-LQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLK  234
             +DG  I  V ++   +LD    +  ++   Q  ++S +      LC     + F   L+
Sbjct  466  VIDGLGIAKVEIRTEQSLDIREYVHARDTEVQTFKNSDEMV----LC----MELFTRTLQ  517

Query  235  KLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEA-AALAGLQEQRVYALHLRRYNDALL-  292
             L+DQ+ +      L+  +G          L++A     G    R   L L+   +A+  
Sbjct  518  PLVDQLRN------LNAYWGRDPMALTAFGLTKARQQWMGSDAGRNANLGLKGKVNAIFT  571

Query  293  -IHDTVRAVDALA--ALQDFY----HREHVTKTQILCAERRLLALFDDRKNELAHLA--T  343
             +     A+D L    +  FY    H +  T  Q     +R +   +  K  + HL   T
Sbjct  572  VLASLAHAIDLLKYHGITPFYRHLLHFQSNTDGQKGGKYQRQIVQDESFKKLMNHLQPWT  631

Query  344  HGPE---NPKLEMLEKILQRQF------------SSSNSPRGIIFTRTRQSAHSLLLWLQ  388
              PE   +PKLE L++++   F             S ++ R +IF   R SA  ++  L+
Sbjct  632  KNPEFIGHPKLEYLKQVVLNHFMDRGEGTAANGDQSQSATRIMIFVHFRDSAEEVVRVLK  691

Query  389  QQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIP  448
            + + L    IR  + +G  ++  S  M Q+ Q  ++QKF+ GT N +VATS+ EEGLDI 
Sbjct  692  RYEPL----IRPHVFVGQSSAKGSEGMDQKTQLSIVQKFKKGTYNTIVATSIGEEGLDIG  747

Query  449  HCNVVVRYGLLTNEISMVQARGR  471
              +++V Y    + I M+Q  GR
Sbjct  748  EVDLIVCYDSSASPIRMLQRMGR  770


>sp|Q4WKB5|MPH1_ASPFU ATP-dependent DNA helicase mph1 OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 
/ Af293) OX=330879 GN=mph1 PE=3 SV=1
Length=1101

 Score = 84.3 bits (207),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 129/503 (26%), Positives = 211/503 (42%), Gaps = 67/503 (13%)

Query  4    RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQH  63
            R YQ+ +    L   N+++ LPTG GKT  AA +          A+++ +     LV Q 
Sbjct  290  RDYQFNIAQRGL-FHNLLVALPTGLGKTFIAATIMLNWYRWTKSAQIIFVAPTKPLVAQQ  348

Query  64   GEE-FRRMLDGRWTVTTLSGDMGP--RAGFGHLARCHDLLICT-AELLQMALTSPEEEEH  119
                F+     R   T L+G+  P  RA      R   +   T    L+  +  P+    
Sbjct  349  ISACFQVAGIPRSETTMLTGEAAPGIRAEEWKSKRVFFMTPQTLVNDLKSGIADPKR---  405

Query  120  VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKL-  178
                   L+VVDE H       Y  ++       L+R     +VL LTA+PG+   S   
Sbjct  406  -----IVLLVVDEAHRATGGYAYVEVVK-----FLKRYNKSFRVLALTATPGSTVESVQA  455

Query  179  ---DGAINHV-LQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLK  234
               D  I  V ++   +LD    +  ++   Q  ++S +      LC     + F   L+
Sbjct  456  IIDDLGIAKVEIRTEQSLDIREYVHARDTEVQTFQNSDEMV----LC----MELFTRTLQ  507

Query  235  KLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEA-AALAGLQEQRVYALHLRRYNDALL-  292
             L+DQ+ +      L+  +G          L++A     G    R   L L+   +A+  
Sbjct  508  PLVDQLRN------LNAYWGRDPMALTAFGLTKARQQWMGSDAGRNANLALKGKVNAIFT  561

Query  293  -IHDTVRAVDALA--ALQDFY----HREHVTKTQILCAERRLLALFDDRKNELAHLA--T  343
             +     A+D L    +  FY    H +  T  Q     +R +   +  K  + HL   T
Sbjct  562  VLASLAHAIDLLKYHGITPFYRHLLHFQSNTDGQKGGKYQRQIVQDESFKKLMNHLQPWT  621

Query  344  HGPE---NPKLEMLEKILQRQF------------SSSNSPRGIIFTRTRQSAHSLLLWLQ  388
              P+   +PKLE L++++   F             S ++ R +IF   R SA  ++  L+
Sbjct  622  KNPDFIGHPKLEYLKQVVLNHFMDRGEGTAANGDQSQSATRIMIFVHFRDSAEEVVRVLK  681

Query  389  QQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIP  448
            + + L    IR  + +G  ++  S  M Q+ Q  ++QKF+ GT N +VATS+ EEGLDI 
Sbjct  682  RHEPL----IRPHVFVGQSSAKGSEGMDQKTQLSIVQKFKKGTYNTIVATSIGEEGLDIG  737

Query  449  HCNVVVRYGLLTNEISMVQARGR  471
              +++V Y    + I M+Q  GR
Sbjct  738  EVDLIVCYDSSASPIRMLQRMGR  760


>sp|B0XMV6|MPH1_ASPFC ATP-dependent DNA helicase mph1 OS=Aspergillus 
fumigatus (strain CBS 144.89 / FGSC A1163 / CEA10) OX=451804 
GN=mph1 PE=3 SV=1
Length=1101

 Score = 84.3 bits (207),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 129/503 (26%), Positives = 211/503 (42%), Gaps = 67/503 (13%)

Query  4    RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQH  63
            R YQ+ +    L   N+++ LPTG GKT  AA +          A+++ +     LV Q 
Sbjct  290  RDYQFNIAQRGL-FHNLLVALPTGLGKTFIAATIMLNWYRWTKSAQIIFVAPTKPLVAQQ  348

Query  64   GEE-FRRMLDGRWTVTTLSGDMGP--RAGFGHLARCHDLLICT-AELLQMALTSPEEEEH  119
                F+     R   T L+G+  P  RA      R   +   T    L+  +  P+    
Sbjct  349  ISACFQVAGIPRSETTMLTGEAAPGIRAEEWKSKRVFFMTPQTLVNDLKSGIADPKR---  405

Query  120  VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKL-  178
                   L+VVDE H       Y  ++       L+R     +VL LTA+PG+   S   
Sbjct  406  -----IVLLVVDEAHRATGGYAYVEVVK-----FLKRYNKSFRVLALTATPGSTVESVQA  455

Query  179  ---DGAINHV-LQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLK  234
               D  I  V ++   +LD    +  ++   Q  ++S +      LC     + F   L+
Sbjct  456  IIDDLGIAKVEIRTEQSLDIREYVHARDTEVQTFQNSDEMV----LC----MELFTRTLQ  507

Query  235  KLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEA-AALAGLQEQRVYALHLRRYNDALL-  292
             L+DQ+ +      L+  +G          L++A     G    R   L L+   +A+  
Sbjct  508  PLVDQLRN------LNAYWGRDPMALTAFGLTKARQQWMGSDAGRNANLALKGKVNAIFT  561

Query  293  -IHDTVRAVDALA--ALQDFY----HREHVTKTQILCAERRLLALFDDRKNELAHLA--T  343
             +     A+D L    +  FY    H +  T  Q     +R +   +  K  + HL   T
Sbjct  562  VLASLAHAIDLLKYHGITPFYRHLLHFQSNTDGQKGGKYQRQIVQDESFKKLMNHLQPWT  621

Query  344  HGPE---NPKLEMLEKILQRQF------------SSSNSPRGIIFTRTRQSAHSLLLWLQ  388
              P+   +PKLE L++++   F             S ++ R +IF   R SA  ++  L+
Sbjct  622  KNPDFIGHPKLEYLKQVVLNHFMDRGEGTAANGDQSQSATRIMIFVHFRDSAEEVVRVLK  681

Query  389  QQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIP  448
            + + L    IR  + +G  ++  S  M Q+ Q  ++QKF+ GT N +VATS+ EEGLDI 
Sbjct  682  RHEPL----IRPHVFVGQSSAKGSEGMDQKTQLSIVQKFKKGTYNTIVATSIGEEGLDIG  737

Query  449  HCNVVVRYGLLTNEISMVQARGR  471
              +++V Y    + I M+Q  GR
Sbjct  738  EVDLIVCYDSSASPIRMLQRMGR  760


>sp|Q5A1A0|MPH1_CANAL ATP-dependent DNA helicase MPH1 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=MPH1 
PE=3 SV=2
Length=1187

 Score = 84.0 bits (206),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 125/554 (23%), Positives = 226/554 (41%), Gaps = 102/554 (18%)

Query  1    MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV  60
             E+R YQ+ ++  A    N+++ LPTG GKT  A+ V    L     +K++ +     LV
Sbjct  135  FEIRDYQYNIVERAFYD-NLLVALPTGLGKTFIASTVMLNFLRWFPISKIIFMAPTRPLV  193

Query  61   TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
             Q  +    +     +   +  D   R     +     +   T ++++  L S      V
Sbjct  194  AQQIKACCSIAGIPSSKVAILLDKT-RRNRAEIWNSRQVFFTTPQVVENDLAS----GVV  248

Query  121  ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG  180
                 +L+V+DE H    +  YN ++       + R     ++L LTA+P    AS ++G
Sbjct  249  NPKSIALLVIDEAHRAKGNYSYNNVVKF-----INRFSDSYRILALTATP----ASDVEG  299

Query  181  AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQ------------DP  228
                V Q+  NL+   +         +  H ++   +   C+  S+             P
Sbjct  300  ----VQQIIDNLNISKVEVRTEQSIDIVRHMKRKTVERKTCYPSSEITECIELLAEGITP  355

Query  229  FGDLLKK--LMDQIH----DHLEMPELSRKFGTQMYEQQVVKLS-----EAAALAGLQEQ  277
              +  K+  L+D       + L+  E+SRK        + +K S     +   + G   +
Sbjct  356  VLNTAKERGLLDLTDPTRINFLQCMEISRKIVANPTIPEGLKWSNYFILQLLGMVGQCYR  415

Query  278  RVYALHLRRY----NDALLIHDTV----RAVDALAALQDFYHREHVTKTQILCAERRLLA  329
            R+    +R +    N+  L   T     ++ + L A  DFY  + +T             
Sbjct  416  RLNIYGIRSFQSYFNEKFLEFKTKWNAKKSTNKLNA--DFYFSDPITTLM----------  463

Query  330  LFDDRKNELAHLATHGPENPKLEMLEKILQRQFSS--SNSPRGIIFTRTRQSAHSLL---  384
               DR  EL+   T+G  +PK+E L + L   F +  +   R IIFT  R+SA  ++   
Sbjct  464  ---DRVEELSKTLTYG--HPKIEALMEELDDFFKNHETAGSRVIIFTEFRESALEIVQCI  518

Query  385  ----------LWLQQQQGLQTVDIRAQLLI-----------------GAGNSSQSTHMTQ  417
                      +++ Q +  +  D+                        +  ++Q T M+Q
Sbjct  519  EKANDNRKPHIFIGQSKEKEKFDVENFGKKKQKGQTKKKKDERPSTRSSSENAQMTGMSQ  578

Query  418  RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA---RA  474
            + Q+E+I+KF+ G  N+LVATS+ EEGLDI   ++++ Y   ++ I  +Q  GR    R 
Sbjct  579  KLQKEIIKKFKKGVFNILVATSIGEEGLDIGEVDLIICYDSTSSPIKNIQRMGRTGRKRD  638

Query  475  DQSVYAFVATEGSR  488
             + +  F + E S+
Sbjct  639  GKVLMLFSSNEESK  652


>sp|A1CS00|MPH1_ASPCL ATP-dependent DNA helicase mph1 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=mph1 PE=3 SV=1
Length=1119

 Score = 84.0 bits (206),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 130/508 (26%), Positives = 209/508 (41%), Gaps = 77/508 (15%)

Query  4    RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQH  63
            R YQ+ +    L   N+++ LPTG GKT  AA +          ++++ +     LV+Q 
Sbjct  307  RDYQFNITQRGL-FHNLLVALPTGLGKTFIAATIMLNWYRWTKSSQIIFVAPTKPLVSQQ  365

Query  64   GEE-FRRMLDGRWTVTTLSGDMGP--RAGFGHLARCHDLLICT-AELLQMALTSPEEEEH  119
                F      R   T L+G+  P  RA      R   +   T    L+  +  P+    
Sbjct  366  ISACFGIAGIPRSQTTMLTGEAAPGIRAEEWKAKRVFFMTPQTLINDLKSGIADPKR---  422

Query  120  VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASK--  177
                   L+VVDE H       Y  ++       ++R     +VL LTA+PG+   S   
Sbjct  423  -----IVLLVVDEAHRATGGYAYVEVVK-----FIKRYNKSFRVLALTATPGSTVESVQA  472

Query  178  -LDG-AINHV-LQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLK  234
             +DG  I  V ++   +LD    +  +N   Q  ++S +      LC     D F   L+
Sbjct  473  VIDGLDIAKVEIRTEQSLDIREYVHARNTDVQTFQNSDEMV----LC----MDLFSRTLQ  524

Query  235  KLMDQI--------HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR  286
             L+DQ+         D + +      FG     QQ + LS+A   A       Y L  + 
Sbjct  525  PLVDQLCSLNAYWGKDPMAL----TPFGLTKARQQWM-LSDAGRNAN------YGLKGKV  573

Query  287  YNDALLIHDTVRAVDALA--ALQDFY----HREHVTKTQILCAERRLLALFDDRKNELAH  340
                 ++     A+D L    +  FY    H    T  Q     +R +   +  K  + H
Sbjct  574  NAIFTVLASLAHAIDLLKYHGITPFYRHLVHFRSNTDGQKGGKYQRQIVQDESFKKLMNH  633

Query  341  LA--THGPE---NPKLEMLEKILQRQFSSSNSPRG------------IIFTRTRQSAHSL  383
            L   T  PE   +PKLE L++++   F  +    G            ++F   R SA  +
Sbjct  634  LQPWTKNPEFIGHPKLEYLKQVVLNHFMDAGEGSGADGNHTRSATRIMVFAHFRDSAEEI  693

Query  384  LLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEE  443
            +  L++ + L    IR  + +G  ++  S  M Q+ Q  ++QKF+ G  N +VATS+ EE
Sbjct  694  VRVLKRYEPL----IRPHVFVGQSSAKGSEGMDQKTQLSIVQKFKKGDYNTIVATSIGEE  749

Query  444  GLDIPHCNVVVRYGLLTNEISMVQARGR  471
            GLDI   +++V Y    + I M+Q  GR
Sbjct  750  GLDIGEVDLIVCYDSSASPIRMLQRMGR  777


>sp|A0MQH0|DICER_CRIGR Endoribonuclease Dicer OS=Cricetulus griseus 
OX=10029 GN=DICER1 PE=2 SV=3
Length=1917

 Score = 83.6 bits (205),  Expect = 4e-15, Method: Compositional matrix adjust.
 Identities = 58/157 (37%), Positives = 89/157 (57%), Gaps = 11/157 (7%)

Query  370  GIIFTRTRQSAHSLLLWLQQ--QQGLQTVDIRAQLLIGAG---NSSQSTHMTQ--RDQQE  422
            GIIF   R +A  L   +++  +Q  +   I +  + G G   N  +S  M    R Q+E
Sbjct  444  GIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRSKQMEAEFRKQEE  503

Query  423  VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFV  482
            V++KF+    NLL+ATSV EEG+DIP CN+VVR+ L T   S VQ++GRARA  S Y  +
Sbjct  504  VLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYVML  563

Query  483  A-TEGSRELKREL-INEALETLMEQAVAAVQKMDQAE  517
            A T+  +  + +L   +A+E ++    +  + +D AE
Sbjct  564  ADTDKIQSFEEDLKTYKAIEKILRNKCS--KSVDGAE  598


 Score = 48.1 bits (113),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 52/176 (30%), Positives = 77/176 (44%), Gaps = 22/176 (13%)

Query  4    RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG------AKVVVLVNRV  57
            R YQ E++  AL+  N I+ L TG+GKT  A  + K     + G       + V LVN  
Sbjct  45   RKYQVELLEAALD-HNTIVCLNTGSGKTFIAVLLTKELAHQIRGDLNPRAKRTVFLVNSA  103

Query  58   HLVTQHGEEFRRMLD---GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP  114
            + V Q     R   D   G ++   ++             + H +LI T  +    L   
Sbjct  104  NQVAQQVSAVRTHSDLKVGEYSNLEVNASWTKERWSQEFTK-HQVLIMTCYVALNVL---  159

Query  115  EEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQP-LPQVLGLTAS  169
             +  ++ L+  +L+V DECH    D  Y  IM      KL  + P  P++LGLTAS
Sbjct  160  -KNGYLSLSDINLLVFDECHLAILDHPYREIM------KLCESCPSCPRILGLTAS  208


>sp|Q6TUI4|DICER_BOVIN Endoribonuclease Dicer OS=Bos taurus OX=9913 
GN=DICER1 PE=2 SV=3
Length=1923

 Score = 83.6 bits (205),  Expect = 4e-15, Method: Compositional matrix adjust.
 Identities = 55/164 (34%), Positives = 90/164 (55%), Gaps = 9/164 (5%)

Query  370  GIIFTRTRQSAHSLLLWLQQ--QQGLQTVDIRAQLLIGAG---NSSQSTHMTQ--RDQQE  422
            GIIF   R +A  L   +++  +Q  +   I +  + G G   N  ++  M    R Q+E
Sbjct  444  GIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEFRKQEE  503

Query  423  VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFV  482
            V++KF+    NLL+ATS+ EEG+DIP CN+VVR+ L T   S VQ++GRARA  S Y  +
Sbjct  504  VLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYVML  563

Query  483  A-TEGSRELKREL-INEALETLMEQAVAAVQKMDQAEYQAKIRD  524
            A T+  +  + +L   +A+E ++    +      +A+ +  + D
Sbjct  564  ADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGEADTEPVVDD  607


 Score = 48.9 bits (115),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 54/176 (31%), Positives = 77/176 (44%), Gaps = 22/176 (13%)

Query  4    RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAK------RHLETVDGAKVVVLVNRV  57
            R YQ E++  AL+  N I+ L TG+GKT  A  + K      R     +G + V LVN  
Sbjct  45   RKYQVELLEAALD-HNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNRNGKRTVFLVNSA  103

Query  58   HLVTQHGEEFRRMLD---GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP  114
            + V Q     R   D   G ++   +S             + H +LI T  +    L   
Sbjct  104  NQVAQQVSAVRTHSDLKVGEYSNLEVSASWTKEKWNQEFTK-HQVLIMTCYVALNVL---  159

Query  115  EEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQP-LPQVLGLTAS  169
             +  ++ L+  +L+V DECH    D  Y  IM      KL    P  P++LGLTAS
Sbjct  160  -KNGYLSLSDINLLVFDECHLAILDHPYREIM------KLCENCPSCPRILGLTAS  208


>sp|Q8LMR2|DCL1_ORYSJ Endoribonuclease Dicer homolog 1 OS=Oryza 
sativa subsp. japonica OX=39947 GN=DCL1 PE=3 SV=1
Length=1883

 Score = 83.2 bits (204),  Expect = 5e-15, Method: Compositional matrix adjust.
 Identities = 62/165 (38%), Positives = 88/165 (53%), Gaps = 8/165 (5%)

Query  345  GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI  404
            G   P+++ L KIL + +  +   R IIF     +A  L   L +   L    IR   LI
Sbjct  620  GKVTPRVQALIKILLK-YQHTEDFRAIIFVERVVTALVLPKVLAELPSLSF--IRCASLI  676

Query  405  GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
            G  N+ +   M     Q+ I KF+DG + LLVATSVAEEGLDI  CNVV+R+ L    ++
Sbjct  677  GHNNNQE---MRACQMQDTISKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLA  733

Query  465  MVQARGRARADQSVYAFVATEGSRELKRELIN--EALETLMEQAV  507
             +Q+RGRAR   S Y  +   G+   +  L N   + ETL ++A+
Sbjct  734  YIQSRGRARKPGSDYILMLERGNISHETFLRNARNSEETLRKEAM  778


 Score = 51.6 bits (122),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 94/218 (43%), Gaps = 54/218 (25%)

Query  4    RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAK----RHLETVDGAKVVVLVNRVHL  59
            R YQ EV+  A + +N I +L TGAGKT  A  + K    + L+       V LV +V L
Sbjct  268  RQYQLEVLEQA-KSRNTIAFLETGAGKTLIAVLLIKSVCDKMLKENKKMLAVFLVPKVPL  326

Query  60   VTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
            V Q                                    +L+ TA++L   L        
Sbjct  327  VYQ------------------------------------VLVMTAQILLNIL----RHSI  346

Query  120  VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGT--GGASK  177
            +++    L+++DECHH  K   Y+++MS++     +  +  P V G+TASP    G  S+
Sbjct  347  IKMDAIHLLILDECHHAVKKHPYSLVMSEFYHTTPKEKR--PAVFGMTASPVNLKGVTSQ  404

Query  178  LDGAINHVLQLCANLDT-WCIMSPQNCCPQLQEHSQQP  214
             D AI  +  L + LD+  C +  +    +L++H   P
Sbjct  405  EDCAIK-IRNLESKLDSVVCTIKDRK---ELEKHVPMP  438


>sp|Q7SCC1|DCL2_NEUCR Dicer-like protein 2 OS=Neurospora crassa 
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / 
FGSC 987) OX=367110 GN=dcl-2 PE=2 SV=4
Length=1534

 Score = 83.2 bits (204),  Expect = 5e-15, Method: Compositional matrix adjust.
 Identities = 112/403 (28%), Positives = 171/403 (42%), Gaps = 43/403 (11%)

Query  120  VELTVFSLIVVDECHH-THKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKL  178
            V L   SLIV+DE H+ +    +  ++   YL  K +   P+P +LGLTASP        
Sbjct  181  VRLDSLSLIVIDEAHNCSGSHPIARLMTEAYLPAK-KAGLPVPSILGLTASPLKSNN---  236

Query  179  DGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPF-GDLLKKLM  237
               +  + +L   LD  C  +P     +L  H  +P            DP   DL+ + +
Sbjct  237  ---LADIEKLEQVLDAVC-RTPTIHREELLAHVNRPEMLVVSYGDSGTDPTPTDLMTRFL  292

Query  238  DQIH--DHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR-YNDALLIH  294
            +  H  D  + P++      Q  E+   KL +         Q+     LR  YN ALL+ 
Sbjct  293  EAYHRLDISKDPDV-LLLKAQRTERAREKLRQMITKKDTLAQK----ELRGVYNRALLVR  347

Query  295  DTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPE-------  347
               R +   AA  D+Y    V+   +L    R       R    A  +   P        
Sbjct  348  ---REIGPWAA--DYYLTRTVS--HMLAELERGEPPAQHRYIGEALRSIPIPAISKEPIQ  400

Query  348  -NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA  406
             +PK++ L K+L    S    P GI+F + R    S++  +     L     R   +IG 
Sbjct  401  LSPKVQTLLKVLA---SHQQDPVGIVFVKERVMV-SIVTHIISTHPLTKDRYRTASMIGT  456

Query  407  ----GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE  462
                G +     MT+++    ++ F+ G  NLLVATSV EEG+D+P CN+V+ +   +N 
Sbjct  457  ASVPGKARNHMDMTKKEDMTSLEGFRLGRFNLLVATSVLEEGIDVPICNLVICFDEPSNI  516

Query  463  ISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQ  505
             S +Q RGRAR   S    +    S E   +  N  LE LM++
Sbjct  517  KSFIQRRGRAREVSSTLYLMVQNASSESATDWHN--LERLMKE  557


>sp|Q25BN1|DICER_CHICK Endoribonuclease Dicer OS=Gallus gallus 
OX=9031 GN=DICER1 PE=2 SV=3
Length=1921

 Score = 82.4 bits (202),  Expect = 8e-15, Method: Compositional matrix adjust.
 Identities = 55/164 (34%), Positives = 89/164 (54%), Gaps = 9/164 (5%)

Query  370  GIIFTRTRQSAHSLLLWLQQ--QQGLQTVDIRAQLLIGAG---NSSQSTHMTQ--RDQQE  422
            GIIF   R +A  L   +++  +Q  +   I +  + G G   N  ++  M    R Q+E
Sbjct  444  GIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEVEFRKQEE  503

Query  423  VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFV  482
            V++KF+    NLL+ATS+ EEG+DIP CN+VVR+ L T   S VQ++GRARA  S Y  +
Sbjct  504  VLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYIML  563

Query  483  A-TEGSRELKREL-INEALETLMEQAVAAVQKMDQAEYQAKIRD  524
            A T+  +  + +L   +A+E ++    +      + E +  + D
Sbjct  564  ADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTSETETEPIVDD  607


 Score = 52.4 bits (124),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 52/176 (30%), Positives = 79/176 (45%), Gaps = 22/176 (13%)

Query  4    RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAK------RHLETVDGAKVVVLVNRV  57
            R YQ E++  AL+  N I+ L TG+GKT  A  + K      R     +G + V LVN  
Sbjct  45   RKYQVELLEAALD-HNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNKNGKRTVFLVNSA  103

Query  58   HLVTQHGEEFRRMLD---GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP  114
            + V Q     R   D   G ++   ++            ++ H +L+ T  +    L   
Sbjct  104  NQVAQQVSAVRTHSDLKVGEYSSLEVTESWTKEKWSQEFSK-HQVLVMTCHVALTVL---  159

Query  115  EEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQP-LPQVLGLTAS  169
               E++ L+  +L+V DECH   +D  Y  IM      K+    P  P++LGLTAS
Sbjct  160  -RNEYLSLSNINLLVFDECHLAIQDHPYREIM------KICEDYPSCPRILGLTAS  208


>sp|P84634|DCL4_ARATH Dicer-like protein 4 OS=Arabidopsis thaliana 
OX=3702 GN=DCL4 PE=1 SV=2
Length=1702

 Score = 82.4 bits (202),  Expect = 9e-15, Method: Compositional matrix adjust.
 Identities = 46/121 (38%), Positives = 71/121 (59%), Gaps = 4/121 (3%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            + IIF     +A +L   L   + L++   ++  L+G  +  +S  M++R  + ++++FQ
Sbjct  490  KCIIFVNRIVTARTLSCILNNLELLRS--WKSDFLVGLSSGLKS--MSRRSMETILKRFQ  545

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFVATEGSR  488
               LNLLVAT V EEGLDI  C +V+RY L     S +Q+RGRAR  QS YAF+   G+ 
Sbjct  546  SKELNLLVATKVGEEGLDIQTCCLVIRYDLPETVTSFIQSRGRARMPQSEYAFLVDSGNE  605

Query  489  E  489
            +
Sbjct  606  K  606


 Score = 47.4 bits (111),  Expect = 6e-04, Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 83/189 (44%), Gaps = 34/189 (18%)

Query  4    RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKR--HLETVDGAKV-VVLVNRVHLV  60
            R YQ E+   A E +N+I++L TG GKT  A  +     HL       V + L   V LV
Sbjct  125  RRYQVELCKKATE-ENVIVYLGTGCGKTHIAVMLIYELGHLVLSPKKSVCIFLAPTVALV  183

Query  61   TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCH----------DLLICTAELLQMA  110
             Q           +    +++  +    G   + + H          ++L+ T ++L   
Sbjct  184  EQQA---------KVIADSVNFKVAIHCGGKRIVKSHSEWEREIAANEVLVMTPQILLHN  234

Query  111  LTSPEEEEHVELTVFSLIVVDECHHTHKDT--VYNVIMSQYLELK-LQRAQPLPQVLGLT  167
            L    +   +++   SL++ DECHH  + +   Y  IM  + + + LQR    P++ G+T
Sbjct  235  L----QHCFIKMECISLLIFDECHHAQQQSNHPYAEIMKVFYKSESLQR----PRIFGMT  286

Query  168  ASPGTGGAS  176
            ASP  G  S
Sbjct  287  ASPVVGKGS  295


>sp|Q9SP32|DCL1_ARATH Endoribonuclease Dicer homolog 1 OS=Arabidopsis 
thaliana OX=3702 GN=DCL1 PE=1 SV=2
Length=1909

 Score = 82.4 bits (202),  Expect = 1e-14, Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 86/165 (52%), Gaps = 8/165 (5%)

Query  345  GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI  404
            G   PK++ L K+L + +  +   R I+F     +A  L     +   L    IR   +I
Sbjct  643  GKVTPKVQSLIKLLLK-YQHTADFRAIVFVERVVAALVLPKVFAELPSLSF--IRCASMI  699

Query  405  GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
            G  NS +   M     Q+ I KF+DG + LLVATSVAEEGLDI  CNVV+R+ L    ++
Sbjct  700  GHNNSQE---MKSSQMQDTISKFRDGHVTLLVATSVAEEGLDIRQCNVVMRFDLAKTVLA  756

Query  465  MVQARGRARADQSVYAFVATEGSRELKRELIN--EALETLMEQAV  507
             +Q+RGRAR   S Y  +   G+      L N   + ETL ++A+
Sbjct  757  YIQSRGRARKPGSDYILMVERGNVSHAAFLRNARNSEETLRKEAI  801


 Score = 60.8 bits (146),  Expect = 4e-08, Method: Compositional matrix adjust.
 Identities = 67/226 (30%), Positives = 106/226 (47%), Gaps = 28/226 (12%)

Query  4    RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKR-HLETVDGAK---VVVLVNRVHL  59
            R YQ +V+  A + KN I +L TGAGKT  A  + K  H + +   +    V LV +V L
Sbjct  250  RRYQLDVLEQA-KAKNTIAFLETGAGKTLIAILLIKSVHKDLMSQNRKMLSVFLVPKVPL  308

Query  60   VTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLAR------CHDLLICTAELLQMALTS  113
            V Q  E  R      + V    G+MG    F    R         +L+ TA++L   L  
Sbjct  309  VYQQAEVIRNQT--CFQVGHYCGEMG--QDFWDSRRWQREFESKQVLVMTAQILLNIL--  362

Query  114  PEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGT-  172
                  + +    L+++DECHH  K   Y+++MS++     +  +  P + G+TASP   
Sbjct  363  --RHSIIRMETIDLLILDECHHAVKKHPYSLVMSEFYHTTPKDKR--PAIFGMTASPVNL  418

Query  173  -GGASKLDGAINHVLQLCANLD-TWCIMSPQNCCPQLQEHSQQPCK  216
             G +S++D AI  +  L   LD T C +  +    +L++H   P +
Sbjct  419  KGVSSQVDCAIK-IRNLETKLDSTVCTIKDRK---ELEKHVPMPSE  460


>sp|Q9UPY3|DICER_HUMAN Endoribonuclease Dicer OS=Homo sapiens 
OX=9606 GN=DICER1 PE=1 SV=3
Length=1922

 Score = 81.3 bits (199),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 53/143 (37%), Positives = 83/143 (58%), Gaps = 9/143 (6%)

Query  370  GIIFTRTRQSAHSLLLWLQQ--QQGLQTVDIRAQLLIGAG---NSSQSTHMTQ--RDQQE  422
            GIIF   R +A  L   +++  +Q  +   I +  + G G   N  ++  M    R Q+E
Sbjct  444  GIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEFRKQEE  503

Query  423  VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFV  482
            V++KF+    NLL+ATS+ EEG+DIP CN+VVR+ L T   S VQ++GRARA  S Y  +
Sbjct  504  VLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYIML  563

Query  483  A-TEGSRELKREL-INEALETLM  503
            A T+  +  + +L   +A+E ++
Sbjct  564  ADTDKIKSFEEDLKTYKAIEKIL  586


 Score = 48.1 bits (113),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 78/176 (44%), Gaps = 22/176 (13%)

Query  4    RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAK------RHLETVDGAKVVVLVNRV  57
            R YQ E++  AL+  N I+ L TG+GKT  A  + K      R   + +G + V LVN  
Sbjct  45   RKYQVELLEAALD-HNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFSRNGKRTVFLVNSA  103

Query  58   HLVTQHGEEFRRMLD---GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP  114
            + V Q     R   D   G ++   ++             + H +LI T  +    L   
Sbjct  104  NQVAQQVSAVRTHSDLKVGEYSNLEVNASWTKERWNQEFTK-HQVLIMTCYVALNVL---  159

Query  115  EEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQP-LPQVLGLTAS  169
             +  ++ L+  +L+V DECH    D  Y  IM      KL    P  P++LGLTAS
Sbjct  160  -KNGYLSLSDINLLVFDECHLAILDHPYREIM------KLCENCPSCPRILGLTAS  208


>sp|A2Q8R2|MPH1_ASPNC ATP-dependent DNA helicase mph1 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=mph1 PE=3 SV=2
Length=1124

 Score = 80.9 bits (198),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 131/509 (26%), Positives = 213/509 (42%), Gaps = 79/509 (16%)

Query  4    RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQH  63
            R YQ+ +    L   N+++ LPTG GKT  AA +          A++V +     LV Q 
Sbjct  322  RDYQFNIAQKGL-FHNLLVALPTGLGKTFIAATIMLNWFRWTKDAQIVFVAPTKPLVAQQ  380

Query  64   GEE-FRRMLDGRWTVTTLSGDMGP--RAGFGHLARCHDLLICT-AELLQMALTSPEEEEH  119
                F      R   T L+G+  P  RA      R   +   T    L+  +  P+    
Sbjct  381  ISACFEVAGIPRSQTTMLTGEAAPGIRAEEWKAKRVFFMTPQTLINDLKTGIADPKR---  437

Query  120  VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASK--  177
                   L+VVDE H       Y V + ++L    Q  +    VL LTA+PG+   S   
Sbjct  438  -----IVLVVVDEAHRATGGYAY-VEVVKFLRRYNQSFR----VLALTATPGSTVESVQA  487

Query  178  -LDG-AINHV-LQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLK  234
             +DG  I+ V ++   +LD    +  ++   Q  ++S++      LC         DL+ 
Sbjct  488  VIDGLDISRVEIRTEQSLDIREYVHSKDTDVQTFQNSEEMV----LCM--------DLMS  535

Query  235  KLMDQIHDHLEM--------PELSRKFG-TQMYEQQVVKLSEAAALAGLQEQRVYALHLR  285
            K +  + D L          P     +G T+  +Q ++  S   A  G++ +      + 
Sbjct  536  KALQPLLDQLRSTNAYWGRDPMGLTAYGLTKARQQWMLSDSGRNAHFGVKAKMNAIFTVL  595

Query  286  RYNDALLIHDTVRAVDALA--ALQDFY----HREHVTKTQILCAERRLLALFDDRKNELA  339
                A L H     +D L    +  FY    H +  T+ Q     +R +   +  K  + 
Sbjct  596  ----ASLAH----GIDLLKYHGITPFYRHLLHFQSNTEGQKGGKYQRQVVQDESYKKLMN  647

Query  340  HLA--THGPE---NPKLEMLEKILQRQFSSSNSPRG------------IIFTRTRQSAHS  382
            HL   T  PE   +PKLE L++++   F  +    G            +IF   R SA  
Sbjct  648  HLQPWTKNPEFIGHPKLEYLKQVVLNHFMDAGEGSGADENKDQPATRVMIFVHFRDSAEE  707

Query  383  LLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAE  442
            +   L++ + +    IR  + +G  ++  S  M Q+ Q +++QKF+ GT N +VATS+ E
Sbjct  708  VTRVLKRYEPM----IRPHVFVGQSSAKGSEGMGQKTQLDIVQKFKKGTYNTIVATSIGE  763

Query  443  EGLDIPHCNVVVRYGLLTNEISMVQARGR  471
            EGLDI   +++V Y    + I M+Q  GR
Sbjct  764  EGLDIGEVDLIVCYDSSASPIRMLQRMGR  792


>sp|Q2HG76|MPH1_CHAGB ATP-dependent DNA helicase MPH1 OS=Chaetomium 
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 
6347 / NRRL 1970) OX=306901 GN=MPH1 PE=3 SV=1
Length=1134

 Score = 80.5 bits (197),  Expect = 3e-14, Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 86/161 (53%), Gaps = 17/161 (11%)

Query  317  KTQILCAE--RRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQF----SSSNSPRG  370
            K Q+L  E  +R++AL + R   +     H    PKL  L + L   F     +SN+ R 
Sbjct  500  KRQLLADESFQRMMALIE-RWMRMEEFNGH----PKLTYLCETLVNHFIDAGENSNT-RA  553

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            I+F+  R SA  ++  L  Q       IRA + +G  +S +S  M Q+ Q E I+KF++G
Sbjct  554  IVFSEYRDSAEEIVRLLNNQPL-----IRATVFVGQADSKRSEGMKQKQQIETIEKFKNG  608

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
              N+LVATS+ EEGLDI   +++V Y    + I M+Q  GR
Sbjct  609  GFNVLVATSIGEEGLDIGQVDLIVCYDASASPIRMLQRMGR  649


 Score = 44.3 bits (103),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 46/173 (27%), Positives = 77/173 (45%), Gaps = 16/173 (9%)

Query  3    LRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ  62
            +R YQ+ ++   L   N ++ LPTG GKT  AA +   +      +K+V +     L +Q
Sbjct  187  IRDYQFSIVKNGL-FHNTLVALPTGLGKTFIAATIMLNYFRWTKRSKIVFVAPTKPLASQ  245

Query  63   HGEEFRRMLD-GRWTVTTLSGDMGP--RAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
              +    +    R   T L+G+  P  R G     R   L   T + L   L+    + +
Sbjct  246  QVQACLGIAGIPRSQATLLTGETPPVLRQGEWESKR---LFFMTPQTLMNDLS----KGY  298

Query  120  VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGT  172
             +     L+VVDE H    D  Y V + ++    ++R     ++L LTA+PG+
Sbjct  299  ADPKSIVLLVVDEAHRATGDYAY-VKVVEF----IRRFSKSIRILALTATPGS  346


>sp|Q6TV19|DICER_DANRE Endoribonuclease Dicer OS=Danio rerio OX=7955 
GN=dicer1 PE=2 SV=2
Length=1865

 Score = 80.5 bits (197),  Expect = 3e-14, Method: Compositional matrix adjust.
 Identities = 54/164 (33%), Positives = 89/164 (54%), Gaps = 9/164 (5%)

Query  370  GIIFTRTRQSAHSLLLWLQQ--QQGLQTVDIRAQLLIG---AGNSSQSTHMTQ--RDQQE  422
            GIIF   R +A  L   +++  +Q  +   I +  + G     N  ++  M    R Q+E
Sbjct  430  GIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHSIGKNQPRNKQMEVEFRKQEE  489

Query  423  VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFV  482
            V++KF+    NLL+ATS+ EEG+DIP CN+VVR+ L T   S VQ++GRARA  S Y  +
Sbjct  490  VLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPVSNYIML  549

Query  483  A-TEGSRELKREL-INEALETLMEQAVAAVQKMDQAEYQAKIRD  524
            A +E ++  + +L   +A+E ++    +   + +  E +    D
Sbjct  550  ADSERTKTFQEDLKTYKAIEKILRNKCSKSAECNDFELEPVTDD  593


 Score = 47.0 bits (110),  Expect = 6e-04, Method: Compositional matrix adjust.
 Identities = 55/185 (30%), Positives = 78/185 (42%), Gaps = 24/185 (13%)

Query  4    RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKR---HLETVDGAKVVVLVNRVHLV  60
            R YQ E++  ALE  N I+ L TG+GKT  A  + K     +   +G + V LVN    V
Sbjct  35   RKYQVELLEAALE-HNTIVCLNTGSGKTFIAVLLIKELSHQIRGENGKRTVFLVNAASSV  93

Query  61   TQHGEEFRRMLD---GRWTVTTLSGDMG--PRAGFGHLARCHDLLICTAELLQMALTSPE  115
             Q     R   D   G +    +S DM   P   +      + +L+ T  +    L    
Sbjct  94   AQQASTVRTHSDLQVGDY----MSEDMTSWPEEMWNREMIENQVLVMTCHIFLHVL----  145

Query  116  EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQP-LPQVLGLTASPGTGG  174
            +   + L+  +L+V DECH       Y  IM      K+    P  P++LGLTAS   G 
Sbjct  146  KNGVLPLSKINLLVFDECHLAITGHPYREIM------KICEGCPSCPRILGLTASILNGK  199

Query  175  ASKLD  179
                D
Sbjct  200  CDPCD  204


>sp|A7LFZ6|DCL4_ORYSJ Endoribonuclease Dicer homolog 4 OS=Oryza 
sativa subsp. japonica OX=39947 GN=DCL4 PE=2 SV=1
Length=1657

 Score = 79.7 bits (195),  Expect = 6e-14, Method: Compositional matrix adjust.
 Identities = 75/263 (29%), Positives = 118/263 (45%), Gaps = 30/263 (11%)

Query  256  QMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHV  315
            +++E  +  L E  +   LQ  R +   L    D L      R VD   +   F H    
Sbjct  317  RLHENIIFCLQELGSFGALQAARTF---LSFDGDKL----DRREVDLNGSTSSFAHHYLN  369

Query  316  TKTQILCAER---RLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGII  372
              T IL   +        FD  K E    +       K  +L  +L R +    + + I+
Sbjct  370  GATSILSRNKTDGSHAGSFDLEKLEEPFFSN------KFSVLINVLSR-YGLQENMKCIV  422

Query  373  FTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTL  432
            F +    A ++   LQ  + L+    + + L+G    S S +M++     ++Q+F  G +
Sbjct  423  FVKRITVARAISNILQNLKCLEF--WKCEFLVGC--HSGSKNMSRNKMDAIVQRFSSGEV  478

Query  433  NLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFVATEGSRELKR  492
            NLLVATSV EEGLDI  C +VVR+ L     S +Q+RGRAR  +S Y  +       L+R
Sbjct  479  NLLVATSVGEEGLDIQTCCLVVRFDLPETVASFIQSRGRARMTKSKYVVL-------LER  531

Query  493  ELINEALETLMEQAVAAVQKMDQ  515
            E  N++ E L+   +A    M++
Sbjct  532  E--NQSHEKLLNGYIAGESIMNE  552


 Score = 47.8 bits (112),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 79/187 (42%), Gaps = 35/187 (19%)

Query  4    RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKR--HLETVDGAKV-VVLVNRVHLV  60
            R YQ ++   A+E +NII++L TG GKT  A  +     HL      +V + L   + LV
Sbjct  31   RKYQLDLCKRAVE-ENIIVYLGTGCGKTHIAVLLIYELGHLIRKPSREVCIFLAPTIPLV  89

Query  61   TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHD------------LLICTAELLQ  108
             Q              V   S D   +  +G+     D            +L+ T ++L 
Sbjct  90   RQQA-----------VVIASSTDFKVQCYYGNGKNSRDHQEWENDMREFEVLVMTPQILL  138

Query  109  MALTSPEEEEHVELTVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGL  166
             +L        +++   +L+++DECHH    K   Y  IM ++        +  P+V G+
Sbjct  139  QSL----RHCFIKMNSIALLILDECHHAQPQKRHPYAQIMKEF--YNSNSVEKFPRVFGM  192

Query  167  TASPGTG  173
            TASP  G
Sbjct  193  TASPIIG  199


>sp|Q9HE09|MFH2_SCHPO Putative ATP-dependent DNA helicase fml2 
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 
GN=fml2 PE=3 SV=1
Length=783

 Score = 79.0 bits (193),  Expect = 7e-14, Method: Compositional matrix adjust.
 Identities = 48/138 (35%), Positives = 75/138 (54%), Gaps = 8/138 (6%)

Query  349  PKLEMLEKILQRQFSSSN----SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI  404
            PK+  L ++L+  F  ++    + R +IFT  R +A  +   L   + +    +RA L I
Sbjct  449  PKMNHLLELLKEHFKDTSEGYQNQRVMIFTEFRNTAEYITTTLLAIRPM----VRASLFI  504

Query  405  GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
            G  NS+ ST M Q  Q+E I +F+ G +N LVATS+ EEGLDI   ++++ Y   ++ I 
Sbjct  505  GQANSAYSTGMNQMQQKETIDQFRAGVINTLVATSIGEEGLDIGDTDMIICYDASSSPIR  564

Query  465  MVQARGRARADQSVYAFV  482
             +Q  GR    +S   FV
Sbjct  565  TIQRMGRTGRKKSGKVFV  582


 Score = 46.2 bits (108),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 53/179 (30%), Positives = 81/179 (45%), Gaps = 18/179 (10%)

Query  2    ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVT  61
            + R+YQ E    AL   N+++ LPTG GKT  AA V   +      +K++ L     L+ 
Sbjct  110  QYRNYQKEFCEQAL-FHNLLLALPTGLGKTFIAAVVMLNYFRWFPESKIIFLAPTKPLLL  168

Query  62   QHGEEFRRMLDGRWTVTT-LSGDMGP-RAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
            Q       +       T  L+G++ P R  F +  +   +   T + LQ  L     +EH
Sbjct  169  QQRVACSNVAGMSPGATAELNGEVSPDRRLFEYNTK--RVFFMTPQTLQNDL-----KEH  221

Query  120  VELTVFSLI--VVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGAS  176
            + L   S+I  + DE H    +  Y  +M   L     R+    +VLGLTA+PG+  AS
Sbjct  222  L-LDAKSIICLIFDEAHRATGNHSYAQVMRAVL-----RSNSHFRVLGLTATPGSSTAS  274


>sp|B3DLA6|DICER_XENTR Endoribonuclease Dicer OS=Xenopus tropicalis 
OX=8364 GN=dicer1 PE=2 SV=2
Length=1893

 Score = 79.3 bits (194),  Expect = 8e-14, Method: Compositional matrix adjust.
 Identities = 48/121 (40%), Positives = 71/121 (59%), Gaps = 7/121 (6%)

Query  370  GIIFTRTRQSAHSLLLWLQQ--QQGLQTVDIRAQLLIGAG---NSSQSTHMTQ--RDQQE  422
            GIIF   R +A  L   +++  +Q  +   I +  + G G   N  ++  M    R Q+E
Sbjct  435  GIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEVEFRKQEE  494

Query  423  VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFV  482
            V++KF+    NLL+ATS+ EEG+DIP CN+VVR+ L +   S VQ++GRARA  S Y  +
Sbjct  495  VLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPSEYRSYVQSKGRARAPISNYIML  554

Query  483  A  483
            A
Sbjct  555  A  555


 Score = 52.8 bits (125),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 53/185 (29%), Positives = 79/185 (43%), Gaps = 20/185 (11%)

Query  4    RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG------AKVVVLVNRV  57
            R YQ E++  AL+  N I+ L +G+GKT  A  ++K     + G       + V LVN  
Sbjct  35   RKYQVELLEAALD-HNTIVCLNSGSGKTFIAVLLSKELSYQIRGDFSKNTKRTVFLVNSE  93

Query  58   HLVTQHGEEFRRMLD---GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP  114
              V+Q     R   D   G ++    +        +      H +L+ T  +    L S 
Sbjct  94   KQVSQQVSAVRTHTDLKVGEYSDQEKTQCWAKERWYLEF-ETHQVLVMTCHIFLNVLKS-  151

Query  115  EEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGG  174
                +V L+  +L+V DECH   +D  Y  IM        +  QP P++LGLTAS   G 
Sbjct  152  ---GNVSLSNINLLVFDECHLAIQDHPYREIMKI-----CESCQPCPRILGLTASILNGK  203

Query  175  ASKLD  179
                D
Sbjct  204  CDPRD  208


>sp|Q7SDF3|MPH1_NEUCR ATP-dependent DNA helicase mph1 OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / 
DSM 1257 / FGSC 987) OX=367110 GN=mph1 PE=3 SV=1
Length=1168

 Score = 79.0 bits (193),  Expect = 9e-14, Method: Compositional matrix adjust.
 Identities = 49/127 (39%), Positives = 72/127 (57%), Gaps = 10/127 (8%)

Query  349  PKLEMLEKILQRQF----SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI  404
            PKLE L + L   F      SN+ R I+F+  R SA  ++  L +Q       I+A + +
Sbjct  497  PKLEYLCETLVNHFMDAGEGSNT-RAIVFSEYRDSAEEIVRILNKQPL-----IKATVFV  550

Query  405  GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
            G  +S +S  M Q+ Q E I+KF++G  N+LVATS+ EEGLDI   +++V Y    + I 
Sbjct  551  GQADSKRSEGMKQKQQIETIEKFKNGAHNVLVATSIGEEGLDIGQVDLIVCYDASASPIR  610

Query  465  MVQARGR  471
            M+Q  GR
Sbjct  611  MLQRMGR  617


 Score = 43.5 bits (101),  Expect = 0.008, Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 75/171 (44%), Gaps = 12/171 (7%)

Query  3    LRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ  62
            +R YQ+ ++   L   N ++ LPTG GKT  AA +   ++     AK V +     L +Q
Sbjct  155  IRDYQFSIVKNGL-FNNTLVALPTGLGKTFIAATIMLNYIRWTKTAKAVFVAPTKPLASQ  213

Query  63   HGEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVE  121
              +    +    R   T L+G+  P       A    L   T + L   L+    + + +
Sbjct  214  QVQACLSIAGIPRSQATLLTGETPPVLREDEWA-TKRLFFMTPQTLMNDLS----KGYAD  268

Query  122  LTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGT  172
                 L+V+DE H    D  Y V + ++    L+R     ++L LTA+PG+
Sbjct  269  PKSIVLLVIDEAHRATGDYAY-VKVVEF----LRRFSKSFRILALTATPGS  314


>sp|Q8BGE5|FANCM_MOUSE Fanconi anemia group M protein homolog 
OS=Mus musculus OX=10090 GN=Fancm PE=1 SV=3
Length=2021

 Score = 78.6 bits (192),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 124/540 (23%), Positives = 213/540 (39%), Gaps = 91/540 (17%)

Query  3    LRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ  62
            +R YQ ++   AL   N ++ LPTG GKT  AA V           KVV +     LVTQ
Sbjct  79   VRDYQLDISRSALFC-NTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVVFMAPTKPLVTQ  137

Query  63   HGEE-FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVE  121
              E  F  M   +  +  ++G          +     +L  T +++   LT       V 
Sbjct  138  QMEACFHVMGIPQSHMAEMTGSTQA-VNRKEIWSSRRVLFLTPQVMVNDLT----RGAVP  192

Query  122  LTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGA  181
             T    +VVDE H    +  Y  ++ + ++          ++L L+A+PG+         
Sbjct  193  ATHVKCLVVDEAHKALGNYAYCQVVRELVKYTTHF-----RILALSATPGSD--------  239

Query  182  INHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQD---PFGDLLKKLMD  238
            I  V Q+  NL    I       P +  +S +         RR +    P G+ L  +  
Sbjct  240  IKAVQQVITNLLIGKIELRSEESPDILPYSHE---------RRVEKLVVPLGEELGAIQK  290

Query  239  Q------------IHDHL----EMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRV---  279
                         IH ++    ++P L+ K+   +   Q  K + +  + G+Q+  +   
Sbjct  291  TYIQILETFASSLIHRNVLMKRDIPNLT-KYQIILARDQFRK-NPSPNIVGIQQGIIEGE  348

Query  280  YALHLRRYNDALLIHDT-------------------VRAVDALAALQDFYHREHVTKTQI  320
            +AL +  Y+   L+                       RA + L+  +DF       ++  
Sbjct  349  FALCISLYHGYELLQQMGMRSLYFFLSGIMDGTKGMTRARNELSRNEDFMKLYTHLQSAF  408

Query  321  LCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNS----------PRG  370
              A     + F     E   + +H    PKL+ LE+++   F S N+           R 
Sbjct  409  APASTSDASAFQRGNKEKKFVYSH----PKLKKLEEVILEHFKSWNAKATTEKKCHESRV  464

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            +IF+  R S   +   L Q + +    IR    +G  +   +   TQ++Q +V+++F+DG
Sbjct  465  MIFSSFRDSVEEIAEMLLQHRPV----IRVMTFVGHASGKNTKGFTQKEQLQVVRQFRDG  520

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRE  489
              N LV+T V EEGLDI   ++++ +    + I ++Q  GR  R  Q     +  EG  E
Sbjct  521  GYNTLVSTCVGEEGLDIGEVDLIICFDAQKSPIRLIQRMGRTGRKRQGRIVVILAEGREE  580


>sp|Q3EBC8|DCL2_ARATH Endoribonuclease Dicer homolog 2 OS=Arabidopsis 
thaliana OX=3702 GN=At3g03300 PE=1 SV=2
Length=1388

 Score = 77.4 bits (189),  Expect = 3e-13, Method: Compositional matrix adjust.
 Identities = 34/81 (42%), Positives = 54/81 (67%), Gaps = 0/81 (0%)

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM  465
            AGN+S   + T++ Q E+++ F+ G +N++VATS+ EEGLD+  CN+V+R+   +N  S 
Sbjct  423  AGNNSGLQNQTRKKQNEIVEDFRRGLVNIIVATSILEEGLDVQSCNLVIRFDPASNICSF  482

Query  466  VQARGRARADQSVYAFVATEG  486
            +Q+RGRAR   S Y  +   G
Sbjct  483  IQSRGRARMQNSDYLMMVESG  503


 Score = 63.5 bits (153),  Expect = 5e-09, Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 89/189 (47%), Gaps = 23/189 (12%)

Query  4    RSYQWEVIMPALEGKNIIIWLPTGAGKT-------RAAAYVAKRHLETVDGAKVVVLVNR  56
            RSYQ E +  A++ +N I++L TG+GKT       R+ AY+ ++          V LV +
Sbjct  25   RSYQVEALEKAIK-QNTIVFLETGSGKTLIAIMLLRSYAYLFRKP----SPCFCVFLVPQ  79

Query  57   VHLVTQHGEEFRRMLDGRWTVTTLSGDMG----PRAGFGHLARCHDLLICTAELLQMALT  112
            V LVTQ  E  +   D +  V    GDMG      + +      +++L+ T  +L  AL 
Sbjct  80   VVLVTQQAEALKMHTDLK--VGMYWGDMGVDFWDSSTWKQEVDKYEVLVMTPAILLDAL-  136

Query  113  SPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQP-LPQVLGLTASPG  171
                   + L++  +++VDECHH      Y  IM ++   +L      +P++ G+TAS  
Sbjct  137  ---RHSFLSLSMIKVLIVDECHHAGGKHPYACIMREFYHKELNSGTSNVPRIFGMTASLV  193

Query  172  TGGASKLDG  180
                  LD 
Sbjct  194  KTKGENLDS  202


>sp|Q1DY43|MPH1_COCIM ATP-dependent DNA helicase MPH1 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=MPH1 PE=3 SV=1
Length=1110

 Score = 75.5 bits (184),  Expect = 9e-13, Method: Compositional matrix adjust.
 Identities = 47/136 (35%), Positives = 72/136 (53%), Gaps = 18/136 (13%)

Query  349  PKLEMLEKILQRQF-------------SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQT  395
            PKLE L + +   F             S SN+ R +IF+  R SA  ++  L++ Q    
Sbjct  666  PKLEYLRRAILNHFLDAGGKNGGDSEGSDSNT-RVMIFSHFRDSAEEIVRVLRKHQPF--  722

Query  396  VDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVR  455
              +R  + +G  N+  S  M Q+ Q EV+ KF+ GT N +VATS+ EEGLDI   ++++ 
Sbjct  723  --VRPHVFVGQANAKGSEGMDQKTQLEVVGKFKTGTYNTIVATSIGEEGLDIGEVDLIIC  780

Query  456  YGLLTNEISMVQARGR  471
            Y   ++ I M+Q  GR
Sbjct  781  YDGHSSPIRMLQRMGR  796


 Score = 38.9 bits (89),  Expect = 0.17, Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 72/175 (41%), Gaps = 24/175 (14%)

Query  4    RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQH  63
            R YQ+ +   AL   N+++ LPTG GKT  AA V          A++V +     LV+Q 
Sbjct  325  REYQFNIAHRAL-FHNLLVALPTGLGKTFIAATVMLNWFHWTKDAQIVFVAPTKPLVSQQ  383

Query  64   GEE-FRRMLDGRWTVTTLSGDMGP--RAGFGHLARCHDLLICTAEL----LQMALTSPEE  116
             +  F      R   T L+G+  P  RA      R   +   T +     L+  +  P+ 
Sbjct  384  VDACFHIAGIPRSQTTLLTGNTPPGVRA---EEWRSKRVFFMTPQTIMNDLKTGIADPKR  440

Query  117  EEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPG  171
                      L+VVDE H       Y  I+       LQR     +VL LTA+PG
Sbjct  441  --------IVLLVVDEAHRATGAYAYVEIVK-----FLQRFNNSFRVLALTATPG  482


>sp|A7EFH4|MPH1_SCLS1 ATP-dependent DNA helicase mph1 OS=Sclerotinia 
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 
GN=mph1 PE=3 SV=1
Length=1235

 Score = 75.1 bits (183),  Expect = 1e-12, Method: Compositional matrix adjust.
 Identities = 41/106 (39%), Positives = 62/106 (58%), Gaps = 4/106 (4%)

Query  366  NSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQ  425
            +S R I+FT  R SA  +   L +   +    IRA + +G  +S +S  M Q  Q E I+
Sbjct  635  SSTRVIVFTEYRDSAEDIARVLNKHGPM----IRASVFVGQSDSKRSEGMNQEKQLETIR  690

Query  426  KFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
            KF+ G +N++VATS+ EEGLDI   +++V Y   ++ I M+Q  GR
Sbjct  691  KFKAGGINVIVATSIGEEGLDIGEVDLIVCYDSSSSPIRMLQRMGR  736


 Score = 50.1 bits (118),  Expect = 7e-05, Method: Compositional matrix adjust.
 Identities = 50/173 (29%), Positives = 79/173 (46%), Gaps = 18/173 (10%)

Query  4    RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQH  63
            R YQ+ ++   L   N+++ LPTG GKT  AA +          +++V +     LV+Q 
Sbjct  266  RRYQYTIVHKGL-FNNLLVALPTGLGKTFIAATIMLNFFRWTTDSQIVFMAPTKPLVSQQ  324

Query  64   GEE-FRRMLDGRWTVTTLSGDMGP--RAGFGHLARCHDLLICTAEL-LQMALTSPEEEEH  119
             +  F      R + T L+GD  P  RA      R   +   T E  L+  +  P++   
Sbjct  325  VKACFEIAGIPRSSTTMLTGDQSPALRAEEWAEKRVFFMTPQTVENDLKTGIADPKK---  381

Query  120  VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGT  172
                  +LIVVDE H    +  Y  ++ Q+    L+R     +VL LTA+PG+
Sbjct  382  -----IALIVVDEAHRATGNYAYTKVV-QF----LRRFNESFRVLALTATPGS  424


>sp|Q8IYD8|FANCM_HUMAN Fanconi anemia group M protein OS=Homo 
sapiens OX=9606 GN=FANCM PE=1 SV=2
Length=2048

 Score = 74.7 bits (182),  Expect = 2e-12, Method: Compositional matrix adjust.
 Identities = 48/152 (32%), Positives = 76/152 (50%), Gaps = 15/152 (10%)

Query  349  PKLEMLEKILQRQFSSSNS----------PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI  398
            PKL+ LE+++   F S N+           R +IF+  R S   +   L Q Q +    I
Sbjct  448  PKLKKLEEVVIEHFKSWNAENTTEKKRDETRVMIFSSFRDSVQEIAEMLSQHQPI----I  503

Query  399  RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL  458
            R    +G  +   +   TQ++Q EV+++F+DG  N LV+T V EEGLDI   ++++ +  
Sbjct  504  RVMTFVGHASGKSTKGFTQKEQLEVVKQFRDGGYNTLVSTCVGEEGLDIGEVDLIICFDS  563

Query  459  LTNEISMVQARGR-ARADQSVYAFVATEGSRE  489
              + I +VQ  GR  R  Q     + +EG  E
Sbjct  564  QKSPIRLVQRMGRTGRKRQGRIVIILSEGREE  595


 Score = 35.0 bits (79),  Expect = 3.2, Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 29/63 (46%), Gaps = 1/63 (2%)

Query  3    LRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ  62
            +R YQ  +   AL   N ++ LPTG GKT  AA V           KVV +     LVTQ
Sbjct  91   VRDYQLHISRAALFC-NTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVVFMAPTKPLVTQ  149

Query  63   HGE  65
              E
Sbjct  150  QIE  152


>sp|A6RIS1|MPH1_BOTFB ATP-dependent DNA helicase MPH1 OS=Botryotinia 
fuckeliana (strain B05.10) OX=332648 GN=mph1 PE=3 SV=2
Length=1229

 Score = 73.6 bits (179),  Expect = 4e-12, Method: Compositional matrix adjust.
 Identities = 40/106 (38%), Positives = 62/106 (58%), Gaps = 4/106 (4%)

Query  366  NSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQ  425
            +S R I+FT  R SA  +   L +   +    I+A + +G  +S +S  M Q  Q E I+
Sbjct  641  SSTRVIVFTEYRDSAEDIARVLNKHGPM----IKASVFVGQSDSKRSEGMNQEKQLETIR  696

Query  426  KFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
            KF+ G +N++VATS+ EEGLDI   +++V Y   ++ I M+Q  GR
Sbjct  697  KFKAGGINVIVATSIGEEGLDIGEVDLIVCYDSSSSPIRMLQRMGR  742


 Score = 47.4 bits (111),  Expect = 5e-04, Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 77/173 (45%), Gaps = 18/173 (10%)

Query  4    RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQH  63
            R YQ+ ++   L   N+++ LPTG GKT  AA +          +++V +     LV+Q 
Sbjct  272  RRYQYTIVHKGL-FNNLLVALPTGLGKTFIAATIMLNFFRWTKNSQIVFMAPTKPLVSQQ  330

Query  64   GEE-FRRMLDGRWTVTTLSGDMGP--RAGFGHLARCHDLLICTAEL-LQMALTSPEEEEH  119
             +  F      R + T L+GD  P  RA      R   +   T E  L+  +  P+    
Sbjct  331  VKACFEIAGIPRSSTTMLTGDQTPALRAEEWDEKRVFFMTPQTVENDLKTGIADPKR---  387

Query  120  VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGT  172
                  +L+VVDE H       Y    ++ +E  L+R     +VL LTA+PG+
Sbjct  388  -----IALLVVDEAHRATGKYAY----TKVVEF-LRRFNKSFRVLALTATPGS  430


>sp|A2QX45|DCL22_ASPNC Dicer-like protein 2-2 OS=Aspergillus niger 
(strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) OX=425011 
GN=dcl2-2 PE=3 SV=2
Length=1362

 Score = 71.2 bits (173),  Expect = 2e-11, Method: Compositional matrix adjust.
 Identities = 48/155 (31%), Positives = 76/155 (49%), Gaps = 17/155 (11%)

Query  370  GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQS-THMTQ----RDQQEVI  424
            G++F   R +  +L  WL +   L +        IG   +  S T +      R+Q E +
Sbjct  357  GLVFVTQRATVLALK-WLIENHPLTSHLFTCGTFIGMSTTQYSKTELGNLHDIRNQTETL  415

Query  425  QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFVAT  484
            +KF+ G+LNL++ T   EEG+D+P CN V+ +    +  S +Q RGRAR + S +  +  
Sbjct  416  EKFRQGSLNLIITTDALEEGIDVPACNTVLNFNCQLSLKSFIQRRGRARRENSQFIIIME  475

Query  485  E--GSRELKRELINEALETLMEQAVAAVQKMDQAE  517
            +  G R LKR         L  + +  VQK+  AE
Sbjct  476  DESGPRYLKR---------LEMEEIELVQKLQNAE  501


 Score = 61.6 bits (148),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 58/216 (27%), Positives = 102/216 (47%), Gaps = 23/216 (11%)

Query  1    MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVV-VLVNRVHL  59
            + +R YQ E++  +L+ +N+I+ +PTG GKT+ A       ++  +  K V +L   V L
Sbjct  21   LRIREYQLEMLNESLK-RNLIVVMPTGTGKTQVAILRILADIDKGNSDKFVWLLCPTVAL  79

Query  60   VTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
              Q   ++  +         L      +A + +      + + T ++L  AL+       
Sbjct  80   SEQQYIQYATVF--------LPSGAEDKAIWDNALSGIKIAVSTYQVLYDALS----HGF  127

Query  120  VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRA-QPLPQVLGLTASPGTGGASKL  178
            V+L+  SL++ DE HH  KD V N IM  +   + Q   Q LP++LGLTASP     S L
Sbjct  128  VKLSQMSLLIFDEAHHCKKDHVANKIMQVHYHKQHQSGVQNLPKILGLTASPILSDLSSL  187

Query  179  DGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQP  214
            +   +++  +C         +P+    QL + + +P
Sbjct  188  EIVESNLGSICK--------TPRQYYAQLLQFTNRP  215


>sp|I3XHK1|FANCM_ARATH DEAD-box ATP-dependent RNA helicase FANCM 
OS=Arabidopsis thaliana OX=3702 GN=FANCM PE=2 SV=1
Length=1344

 Score = 70.5 bits (171),  Expect = 3e-11, Method: Compositional matrix adjust.
 Identities = 46/150 (31%), Positives = 77/150 (51%), Gaps = 7/150 (5%)

Query  343  THGPENPKLEMLEKILQRQFSSSN--SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRA  400
            +HG  +PKL  + +IL   F   +  + R IIF+  R S   ++  L     +    ++A
Sbjct  443  SHGAPSPKLSKMLEILVDHFKVKDPKTSRVIIFSNFRGSVRDIMNALSNIGDM----VKA  498

Query  401  QLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT  460
               IG  +       +Q+ QQ V++KF+ G  N++VATS+ EEGLDI   ++V+ +    
Sbjct  499  TEFIGQSSGKTLKGQSQKIQQAVLEKFRAGGFNVIVATSIGEEGLDIMEVDLVICFDANV  558

Query  461  NEISMVQARGR-ARADQSVYAFVATEGSRE  489
            + + M+Q  GR  R +      +A EGS +
Sbjct  559  SPLRMIQRMGRTGRKNNGRVVVLACEGSEK  588


 Score = 49.7 bits (117),  Expect = 9e-05, Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 79/173 (46%), Gaps = 16/173 (9%)

Query  3    LRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ  62
            LR YQ+ +   AL   N ++ LPTG GKT  AA V   +       K+V       LV Q
Sbjct  117  LRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVMYNYFRWFPQGKIVFAAPSRPLVMQ  175

Query  63   HGEEFRRM--LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
              E    +  +   WT+  L+G   P +    L +   +   T ++L+  + S       
Sbjct  176  QIEACHNIVGIPQEWTI-DLTGQTCP-SKRAFLWKSKRVFFVTPQVLEKDIQS-----GT  228

Query  121  ELTVFSL-IVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGT  172
             LT + + +V+DE H    +  Y V++ + + + +Q      ++L LTA+PG+
Sbjct  229  CLTNYLVCLVIDEAHRALGNYSYCVVVRELMAVPIQL-----RILALTATPGS  276


>sp|Q6BRF0|MPH1_DEBHA ATP-dependent DNA helicase MPH1 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / 
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=MPH1 PE=3 SV=2
Length=1105

 Score = 68.9 bits (167),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 123/555 (22%), Positives = 215/555 (39%), Gaps = 94/555 (17%)

Query  1    MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV  60
             E+R YQ+ ++  A    N+++ LPTG GKT  A+ V           K++ +     LV
Sbjct  85   FEVRDYQFNIVQRAFYD-NLLVALPTGLGKTFIASTVMLNFTRWFPRGKIIFMAPTKPLV  143

Query  61   TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTS----PEE  116
             Q  +    +     +   +  D   R     +     +   T ++++  LT+    P+E
Sbjct  144  AQQIKACCGITGIPTSEVAILLDKS-RRNRADIWDSKTVFFTTPQVVENDLTAGIIDPKE  202

Query  117  EEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGAS  176
                      L+V+DE H +  +  YN ++       +       ++L LTA+P    AS
Sbjct  203  --------VVLLVIDEAHKSKGNYAYNNVVKFITRFNISF-----RILALTATP----AS  245

Query  177  KLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKL  236
             ++G    V ++  NL    +         + ++ +Q  K+             +L+  L
Sbjct  246  DVEG----VQEIIDNLSISKVEVRTEQSIDITKYMKQ--KKIERVTVSPSVEICELVDML  299

Query  237  MDQIHDHLEMPELSRKFG----TQMYEQQVVKLSE-----AAALAGLQEQRVYALHLRRY  287
               I   L M    R +     +++   QV+  S+          GL+ Q  + L +   
Sbjct  300  CTAIQPVLSMANERRIYDMSDPSKINAFQVIDASQRLLKNPTIPEGLKWQNYFILQILNV  359

Query  288  NDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALF----------DDRKNE  337
                L    +  + +     D  H+E   K +   +  +  A F          D  K  
Sbjct  360  VGQALRRLNIYGIKSFYNYFDQKHKEFTIKFKNKKSNNQTAARFYFHDNIKLILDKCKEL  419

Query  338  LAHLATHGPENPKLEMLEKILQRQF--SSSNSPRGIIFTRTRQSAHSLL-----------  384
            +A     G  +PKLE+L   L   F  + +N  R IIFT  R+SA  ++           
Sbjct  420  IADDNFLG--HPKLEILINELDEFFKENEANDSRVIIFTEFRESALDIVSSIERIGSNLR  477

Query  385  --LWLQQQQGLQTVDIRAQLLI------------GAGNS--------------SQSTHMT  416
              +++ Q +  +  D  A L              G  NS              +Q   M 
Sbjct  478  PHIFIGQSKEKEKFDEEAYLSKGKKGRTKGKATKGKQNSETPERSTSRTSSEDAQIKGMN  537

Query  417  QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA---R  473
            Q+ Q+++I+KF+ G  N+LVATS+ EEGLDI   +++V Y   ++ I  +Q  GR    R
Sbjct  538  QKLQKDLIKKFKKGEYNILVATSIGEEGLDIGEVDLIVCYDSTSSPIKNIQRMGRTGRKR  597

Query  474  ADQSVYAFVATEGSR  488
              + +  F   E S+
Sbjct  598  DGKVLLLFAGNEESK  612


>sp|A1C9M6|DCL2_ASPCL Dicer-like protein 2 OS=Aspergillus clavatus 
(strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / 
NRRL 1 / QM 1276 / 107) OX=344612 GN=dcl2 PE=3 SV=1
Length=1389

 Score = 68.2 bits (165),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 61/182 (34%), Positives = 86/182 (47%), Gaps = 17/182 (9%)

Query  348  NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG  407
            +PKLE L   L        S  G+IF + R +  S++  L           R+   +G  
Sbjct  366  SPKLEALIGFLDAMDDPEFS--GLIFVKQRATV-SVMTDLLAVHPRTRERFRSAAYVGWS  422

Query  408  NSSQSTH-----MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE  462
            NSS S       ++   Q   +  F+ G  NL++AT V EEG+DI  C+VVV Y    N 
Sbjct  423  NSSGSKDFLGNLLSMHGQLSTLDDFRSGHKNLIIATDVLEEGIDISACSVVVCYDKPPNL  482

Query  463  ISMVQARGRARADQSVYA--FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA  520
             S VQ RGRAR  QS YA  F A + + +L +       +TL EQA+    + D+   Q+
Sbjct  483  KSFVQRRGRARQKQSTYAIMFPAEDSAFDLAK------WQTL-EQAMIEAYQDDERHLQS  535

Query  521  KI  522
             I
Sbjct  536  AI  537


 Score = 53.1 bits (126),  Expect = 8e-06, Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 100/218 (46%), Gaps = 19/218 (9%)

Query  4    RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVV-VLVNRVHLVTQ  62
            R+YQ E++  +++ +NII+ + TG+GKT  A    K  L++    K++  L   V L TQ
Sbjct  17   RNYQLEMLEASMK-ENIIVAMDTGSGKTHIAVLRIKAELDSCPPDKIIWFLAPTVALCTQ  75

Query  63   HGEEFRRMLDGRWTVTTLSGD----MGPRAGFGHLARCHDLLICTAELLQMALTSPEEEE  118
              +     L    T T    D       +A +  + +   +++ T  +L  AL+      
Sbjct  76   QHKVIASNLPAVQTRTLTGLDKVELWTEQAIWDAILKDVRVVVSTYAVLADALS----HG  131

Query  119  HVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQP--LPQVLGLTASPGTGGAS  176
             + ++  +LI+ DE HH  +    N IM  +    + +  P  +P+++GLTASP      
Sbjct  132  FMRMSRLALIIFDEAHHCMRKHAANKIMQDFYHPTVSKFGPSAVPRIMGLTASPVVRSNR  191

Query  177  KLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQP  214
            +       +  +  NLD  C  +P+    +L + S +P
Sbjct  192  E------ELFTIETNLDAVC-KTPRAHRQELLKFSHRP  222


>sp|Q10HL3|DCL2A_ORYSJ Endoribonuclease Dicer homolog 2a OS=Oryza 
sativa subsp. japonica OX=39947 GN=DCL2A PE=2 SV=1
Length=1410

 Score = 68.2 bits (165),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 51/84 (61%), Gaps = 0/84 (0%)

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM  465
            AG+       ++++  E+++ F+ G +++++AT + EEGLD+P CN+V+R+       S 
Sbjct  432  AGSRPGLLSQSRKNHTEIVESFRKGKVHIIIATQILEEGLDVPSCNLVIRFDPSATVCSF  491

Query  466  VQARGRARADQSVYAFVATEGSRE  489
            +Q+RGRAR + S Y  +   G  E
Sbjct  492  IQSRGRARMENSDYLLLVGRGDVE  515


 Score = 52.8 bits (125),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 78/176 (44%), Gaps = 17/176 (10%)

Query  4    RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETV---DGAKV-VVLVNRVHL  59
            R YQ E +  A+ G N + +L TG+GKT  A  + + +   V   D  +  V LV  V L
Sbjct  35   RWYQLEALERAVRG-NTLAFLETGSGKTLIAVMLLRAYAHRVRRPDSRRFAVFLVPTVVL  93

Query  60   VTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCH----DLLICTAELLQMALTSPE  115
            V Q      +  D    V    G+MG         R      ++L+ T ++L   L    
Sbjct  94   VGQQARVVEQHTD--LVVKQFCGEMGVDFWDAATWRSQLEDGEVLVMTPQILLDNL----  147

Query  116  EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYL--ELKLQRAQPLPQVLGLTAS  169
                  L   +L++ DECHH   +T Y  I  ++   +L    + PLP++ G++AS
Sbjct  148  RHSFFRLQDIALLIFDECHHARGNTPYACIFKEFYHPQLNSSASDPLPRIFGMSAS  203


>sp|Q69LX2|DCL2B_ORYSJ Endoribonuclease Dicer homolog 2b OS=Oryza 
sativa subsp. japonica OX=39947 GN=DCL2B PE=2 SV=2
Length=1377

 Score = 68.2 bits (165),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 51/84 (61%), Gaps = 0/84 (0%)

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM  465
            AG+       ++++  E+++ F+ G +++++AT + EEGLD+P CN+V+R+       S 
Sbjct  432  AGSRPGLLSQSRKNHTEIVESFRKGKVHIIIATQILEEGLDVPSCNLVIRFDPSATVCSF  491

Query  466  VQARGRARADQSVYAFVATEGSRE  489
            +Q+RGRAR + S Y  +   G  E
Sbjct  492  IQSRGRARMENSDYLLLVGRGDVE  515


 Score = 52.8 bits (125),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 78/176 (44%), Gaps = 17/176 (10%)

Query  4    RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETV---DGAKV-VVLVNRVHL  59
            R YQ E +  A+ G N + +L TG+GKT  A  + + +   V   D  +  V LV  V L
Sbjct  35   RWYQLEALERAVRG-NTLAFLETGSGKTLIAVMLLRAYAHRVRRPDSRRFAVFLVPTVVL  93

Query  60   VTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCH----DLLICTAELLQMALTSPE  115
            V Q      +  D    V    G+MG         R      ++L+ T ++L   L    
Sbjct  94   VGQQARVVEQHTD--LVVKQFCGEMGVDFWDAATWRSQLEDGEVLVMTPQILLDNL----  147

Query  116  EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYL--ELKLQRAQPLPQVLGLTAS  169
                  L   +L++ DECHH   +T Y  I  ++   +L    + PLP++ G++AS
Sbjct  148  RHSFFRLQDIALLIFDECHHARGNTPYACIFKEFYHPQLNSSASDPLPRIFGMSAS  203


>sp|Q0UL22|DCL2_PHANO Dicer-like protein 2 OS=Phaeosphaeria nodorum 
(strain SN15 / ATCC MYA-4574 / FGSC 10173) OX=321614 GN=DCL2 
PE=3 SV=2
Length=1399

 Score = 67.0 bits (162),  Expect = 5e-10, Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 65/133 (49%), Gaps = 17/133 (13%)

Query  418  RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQS  477
            R+QQ  ++ F+ G LNL++ATSV EEG+D+  C++VV +    N  S VQ RGRAR ++S
Sbjct  436  RNQQATLENFRAGKLNLILATSVLEEGIDVSSCHLVVCFESPKNLKSFVQRRGRARKEES  495

Query  478  VYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQA  537
             Y     +  R    E               + Q +++    A + DL+Q  L     Q 
Sbjct  496  KYVIFVPQAGRRRDPE---------------SWQSLEEGMKAAYLDDLRQVKLATEKEQ-  539

Query  538  AQRENQRQQFPVE  550
             Q E   + F V+
Sbjct  540  -QSETGHRNFEVK  551


 Score = 51.2 bits (121),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 85/176 (48%), Gaps = 14/176 (8%)

Query  1    MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVV-VLVNRVHL  59
              LRSYQ E++  +++  NII  + TG+GKT  A    +  LE     K+V  L   V L
Sbjct  9    FRLRSYQAEMVEESMQS-NIICVMDTGSGKTHIAIDRTRAELEICRPDKIVWFLAPTVTL  67

Query  60   VTQHGEEFRRMLDGRWTVTTLSG----DMGPRAG-FGHLARCHDLLICTAELLQMALTSP  114
              Q    F+  L G + +  LSG    D     G +  +     +++ T ++L  AL+  
Sbjct  68   CEQQFAVFKSNLPG-YGIQLLSGKDNLDHWTDQGVWDDVLLNIRIVLSTHQVLLDALS--  124

Query  115  EEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASP  170
                 V++   SL++ DE HH       + IMS + + ++     LP++LGL+ASP
Sbjct  125  --HGFVKMRNLSLLIFDEAHHCSLKHPAHRIMSDFYKPRI--GTELPRILGLSASP  176


>sp|A3GH78|MPH1_PICST ATP-dependent DNA helicase MPH1 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=MPH1 PE=3 SV=3
Length=1050

 Score = 66.2 bits (160),  Expect = 7e-10, Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 100/218 (46%), Gaps = 55/218 (25%)

Query  308  DFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNS  367
            DFY  E + +       +R+  + DD K     + +H    PK+E + + L   F+ +N+
Sbjct  403  DFYFSEPIKQLM-----KRIRTMIDDPK-----VFSH----PKIEAMMEELDEFFTINNA  448

Query  368  --PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG--------------------  405
               + IIFT  R+SA  ++ ++++       +++  + IG                    
Sbjct  449  TDSKVIIFTEFRESALEIVRFIEKVGK----NLKPHIFIGQAKERDKFDESNFGKKSKGK  504

Query  406  ------------AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV  453
                        +  ++Q   M Q+ Q+E+I+ F+ GT N+LVATS+ EEGLDI   +++
Sbjct  505  RVGKKQQDDSKSSSENAQINGMNQKLQKEIIKNFKQGTYNILVATSIGEEGLDIGEVDLI  564

Query  454  VRYGLLTNEISMVQARGRA---RADQSVYAFVATEGSR  488
            + Y   ++ I  +Q  GR    R  + V  F + E S+
Sbjct  565  ICYDSTSSPIKNIQRMGRTGRKRDGKVVLLFSSNEESK  602


 Score = 45.1 bits (105),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 84/199 (42%), Gaps = 31/199 (16%)

Query  1    MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV  60
             E+R YQ+ ++  A    N+++ LPTG GKT  A+ V    L     +K++ +     LV
Sbjct  86   FEVRDYQFNIVQRAF-YHNLLVALPTGLGKTFIASTVMLNFLRWFPESKMIFVAPTKPLV  144

Query  61   TQHGEEFRRMLDGRWTVTTLSGDM------GPRAGFGHLARCHDLLICTAELLQMALTSP  114
             Q        +    ++T +            R   G +     +   T ++++  L S 
Sbjct  145  AQQ-------IKACCSITGIPSSKVAILLDKTRKNRGEIWDEKQVFFTTPQVVENDLASG  197

Query  115  EEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGG  174
                 V+    +L+V+DE H    +  YN I+       + R     ++L LTA+P    
Sbjct  198  ----LVDPKTIALLVIDEAHRAKGNYAYNNIVKF-----MDRFTNSYRILALTATP----  244

Query  175  ASKLDGAINHVLQLCANLD  193
            AS +DG    V ++  NL+
Sbjct  245  ASDVDG----VQEIIDNLN  259


>sp|Q75AA7|MPH1_EREGS ATP-dependent DNA helicase MPH1 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=MPH1 PE=3 SV=2
Length=1077

 Score = 65.9 bits (159),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 124/563 (22%), Positives = 219/563 (39%), Gaps = 132/563 (23%)

Query  2    ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVT  61
            E+R YQ+ ++  AL  +N++  +PTG GKT  A+ V   +     G K++       LV 
Sbjct  91   EVREYQFNIVHRAL-FENVLCAIPTGMGKTFIASTVMLNYYRWTVGTKIIFTAPTRPLVA  149

Query  62   QHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALT----SPEEE  117
            Q  +    +    +  T +  D   R     +     +   T ++++  L     +P++ 
Sbjct  150  QQIKACLGITGIPYNDTAILLDKS-RKHREQIWSEKRVFFATPQVVENDLKRGALNPKD-  207

Query  118  EHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASK  177
                     L+V+DE H       Y V ++++++    R     +VL LTA+P    A+ 
Sbjct  208  -------VVLLVIDEAHRARGSYAY-VELTKFID----RFNTSYRVLALTATP----ATD  251

Query  178  LDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLM  237
            L+G    V ++  NL    I        +L+    +   +Y    RR  +   +++  L+
Sbjct  252  LEG----VQEVVDNLQISKI--------ELRTEESEDIVRY--MKRRDTE---EVIVPLI  294

Query  238  DQIHDHLE------MPELSRKFGTQMYE-------------QQVVK-LSEAAALAGLQEQ  277
             +I D +E       P L       +Y+             QQ  K L+ ++   G++ +
Sbjct  295  PEIEDIIEQLGIAITPVLKEAVQLGLYDDCEPVNINAFIAMQQSQKILANSSIPEGVKWK  354

Query  278  RVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALF------  331
              + L L  +   +L    +  +       D  +RE  TK  I  +  +  A F      
Sbjct  355  NYFILQLLCHVGHMLKRLKIYGIQTFYTYFDNKYREFTTKYGIGKSTNKTAASFYYSSIL  414

Query  332  -DDRKNELAHLAT-----HGPENPKLEMLEKILQRQFSSS-NSPRGIIFTRTRQSAHSLL  384
             +  K   A+ A      HG    KL  +   L   F+S+ +  R IIFT  R+SA  L+
Sbjct  415  KNITKTCQAYTANPSFLGHG----KLYRVRDELSTFFASAGDDSRVIIFTELRESALELV  470

Query  385  --------------LWLQQQQGLQTVD---------------------------------  397
                          +++ Q +G ++ D                                 
Sbjct  471  KCVDNMNDRFIRPHIFIGQAKGKESFDDGEYLRKHAPKGRKKVDRIRRLEEEKRLADEKL  530

Query  398  --------IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPH  449
                     R     G+   +Q + MTQ+ Q+EVI  F+ G  N+LV TS+ EEGLDI  
Sbjct  531  RKKEEEKLARTARRTGSSEEAQISGMTQKQQKEVISLFKKGDYNVLVCTSIGEEGLDIGE  590

Query  450  CNVVVRYGLLTNEISMVQARGRA  472
             ++++ Y   ++ I  +Q  GR 
Sbjct  591  VDMIICYDTTSSPIKNIQRMGRT  613


>sp|Q9VDA0|FANCM_DROME DEAD-box ATP-dependent DNA helicase Fancm 
OS=Drosophila melanogaster OX=7227 GN=Fancm PE=1 SV=2
Length=1489

 Score = 65.5 bits (158),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 75/140 (54%), Gaps = 7/140 (5%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K E L ++L + F ++   R I+F   R+S   +   L Q + +    +R +  +G G++
Sbjct  415  KYEKLRQVLVQHFQANPDSRAIVFCEYRESVMLIHRLLLQHRPV----LRPRCFVGQGST  470

Query  410  SQSTH-MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL-TNEISMVQ  467
              +++ +TQ+ Q +++  F+ GT N+LVATS+ EEGLD+    ++V + +  TN    +Q
Sbjct  471  VGASYALTQKQQLQIMTDFRSGTSNVLVATSIGEEGLDVGEVEMIVCFDICSTNPTRFIQ  530

Query  468  ARGR-ARADQSVYAFVATEG  486
              GR  R        + TEG
Sbjct  531  RIGRTGRKKNGEVVMLVTEG  550


 Score = 51.2 bits (121),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 81/193 (42%), Gaps = 16/193 (8%)

Query  1    MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV  60
            + LRSYQ  ++  AL  KN ++ LPTG GKT  AA V           K+V +     LV
Sbjct  56   LPLRSYQQTIVQSAL-FKNTLVVLPTGLGKTFIAAVVMYNFYRWYPKGKIVFMAPTRPLV  114

Query  61   TQHGEEFRRMLDGRWTVTT-LSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
            +Q     ++++      T  L+G + PR     L     +   T +++   +   + E  
Sbjct  115  SQQIHASQKIMPFPSEDTVQLTGQL-PRPKRAELWASKRVFFATPQVVHSDMLEADGECS  173

Query  120  VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLD  179
                   LIVVDE H       Y    +Q  +  + R +   ++L L+A+PG        
Sbjct  174  FPFGSIKLIVVDEAHRAKGRYAY----TQVADCLMARNRYF-RMLALSATPGR-------  221

Query  180  GAINHVLQLCANL  192
              +  V  +C NL
Sbjct  222  -TMEDVAAVCRNL  233


>sp|Q9LXW7|DCL3_ARATH Endoribonuclease Dicer homolog 3 OS=Arabidopsis 
thaliana OX=3702 GN=DCL3 PE=1 SV=2
Length=1580

 Score = 64.7 bits (156),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 113/517 (22%), Positives = 206/517 (40%), Gaps = 90/517 (17%)

Query  5    SYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLET-VDGAKVVVLVNRVHLVTQH  63
            SY+ +V   A + +NII  L TG  K+     + K    +  D   ++ L   V+LV Q 
Sbjct  46   SYELKVYEVA-KNRNIIAVLGTGIDKSEITKRLIKAMGSSDTDKRLIIFLAPTVNLVKQQ  104

Query  64   GEEFRRMLD------------GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMAL  111
              E R +++             +WT      +             HD+L+ T ++L   L
Sbjct  105  CCEIRALVNLKVEEYFGAKGVDKWTSQRWDEEFSK----------HDVLVMTPQILLDVL  154

Query  112  TSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPG  171
             S      ++L +  L+++DECHHT  +  Y  +M ++       +   P++ GLTAS  
Sbjct  155  RSA----FLKLEMVCLLIIDECHHTTGNHPYAKLMKEF----YHESTSKPKIFGLTAS--  204

Query  172  TGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQ-QPCKQYNLCHRRSQDPFG  230
                              A +    + SP N   Q+ E  +    K +N   R   + F 
Sbjct  205  ------------------AVIRKGIVSSPSNYAAQVSELERLMDSKIFNPEEREGVEKFA  246

Query  231  DLLKK--LMDQIHDHLEMPELSRKFGTQ--MYEQQVVKLSEAAALAGLQEQRVYALHLRR  286
              +K+  ++        + EL  K  T    ++  + +L E    + L     +  + +R
Sbjct  247  TTVKEGPILYNPSPSCSL-ELKEKLETSHLKFDASLRRLQELGKDSFLNMDNKFETYQKR  305

Query  287  ----YNDALLIHDTVRAVDALAALQDFYHREHVTKTQ--------ILCAE--RRLLA---  329
                Y + L   D +  + A  A +    +   TK +        ++C E    +L+   
Sbjct  306  LSIDYREILHCLDNLGLICAHLAAEVCLEKISDTKEESETYKECSMVCKEFLEDILSTIG  365

Query  330  ---------LFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSA  380
                     L D ++N L+ + + G  +PKL+ L  +L   F      + +I      +A
Sbjct  366  VYLPQDDKSLVDLQQNHLSAVIS-GHVSPKLKELFHLLD-SFRGDKQKQCLILVERIITA  423

Query  381  HSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSV  440
              +  +++++  L  +++   L +   N S +    Q+ Q E+   FQ G +NLL  T V
Sbjct  424  KVIERFVKKEASLAYLNV---LYLTENNPSTNVS-AQKMQIEIPDLFQHGKVNLLFITDV  479

Query  441  AEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQS  477
             EEG  +P C+ +V + L     S  Q++  A+   S
Sbjct  480  VEEGFQVPDCSCMVCFDLPKTMCSYSQSQKHAKQSNS  516


>sp|Q6FPQ3|MPH1_CANGA ATP-dependent DNA helicase MPH1 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=MPH1 PE=3 SV=1
Length=1052

 Score = 64.3 bits (155),  Expect = 3e-09, Method: Compositional matrix adjust.
 Identities = 36/104 (35%), Positives = 57/104 (55%), Gaps = 3/104 (3%)

Query  388  QQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDI  447
            ++Q  LQ    R     G+   +Q + M Q+ Q+EVI+KF+ G  N+LV TS+ EEGLDI
Sbjct  519  KKQAALQEKLERTSRRTGSSEEAQLSGMNQKQQKEVIKKFKSGLYNVLVCTSIGEEGLDI  578

Query  448  PHCNVVVRYGLLTNEISMVQARGRA---RADQSVYAFVATEGSR  488
               ++++ Y   ++ I  +Q  GR    R  + V  F + E S+
Sbjct  579  GEVDLIICYDTTSSPIKNIQRMGRTGRKRDGRIVLMFSSNEASK  622


 Score = 35.0 bits (79),  Expect = 2.8, Method: Compositional matrix adjust.
 Identities = 20/63 (32%), Positives = 31/63 (49%), Gaps = 1/63 (2%)

Query  1    MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV  60
             E+R YQ++++   L  +NI+  +PTG GKT  A+ V          AK++       LV
Sbjct  80   FEVRDYQFDIVRKGL-LQNILCAIPTGMGKTFIASTVMLNFFRWTKTAKIIFTAPTRPLV  138

Query  61   TQH  63
             Q 
Sbjct  139  AQQ  141


>sp|Q9VCU9|DCR1_DROME Endoribonuclease Dcr-1 OS=Drosophila melanogaster 
OX=7227 GN=Dcr-1 PE=1 SV=1
Length=2249

 Score = 63.5 bits (153),  Expect = 6e-09, Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 43/64 (67%), Gaps = 0/64 (0%)

Query  411  QSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARG  470
            +   +  R Q+EV+++F+    N+L+ TSV EEG+D+P CN+VVR+   T   S VQ +G
Sbjct  542  KEAELEHRRQEEVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPTTYRSYVQCKG  601

Query  471  RARA  474
            RARA
Sbjct  602  RARA  605


>sp|A0A1D5PRR9|FANCM_CHICK Fanconi anemia group M protein OS=Gallus 
gallus OX=9031 GN=FANCM PE=1 SV=1
Length=2041

 Score = 63.2 bits (152),  Expect = 8e-09, Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 71/156 (46%), Gaps = 19/156 (12%)

Query  349  PKLEMLEKILQRQFSSSN--------------SPRGIIFTRTRQSAHSLLLWLQQQQGLQ  394
            PKL+ LE+I+   F S                  R +IF+  R S   +   L +   + 
Sbjct  443  PKLKKLEEIVIEHFKSRKMGCSDQTTSGGTCVDTRVMIFSSFRDSVQEIAEMLSRFSPV-  501

Query  395  TVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV  454
               +R    +G      +   TQ++Q EV+++F++G  N LV+T V EEGLDI   ++++
Sbjct  502  ---VRVMTFVGHSTGKSTKGFTQKEQLEVVKRFREGGYNTLVSTCVGEEGLDIGEVDLII  558

Query  455  RYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRE  489
             +    + I +VQ  GR  R  Q     +  EG  E
Sbjct  559  CFDAQKSPIRLVQRMGRTGRQRQGRVVVILAEGREE  594


 Score = 33.5 bits (75),  Expect = 9.1, Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 66/174 (38%), Gaps = 20/174 (11%)

Query  4    RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQH  63
            R YQ  +   AL   N ++ LPTG GKT  AA V           KV+ L     LV Q 
Sbjct  85   RPYQLRMARAALFA-NTLLCLPTGLGKTFVAAVVMYNFYRWFPSGKVLFLAPTKALVAQQ  143

Query  64   GEEFRRMLD--GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMAL---TSPEEEE  118
             E   +++   GR       G          L     +   T +++   L   T P  E 
Sbjct  144  MEACAQLMGIPGRDMAEMTGGTQA--LSRRELWASRRVFFLTPQIMVNDLSRGTCPAVE-  200

Query  119  HVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGT  172
                     +VVDE H    +  Y  ++ +     L R     +VL LTA+PG+
Sbjct  201  ------VKCLVVDEAHKALGNHAYCQVVKE-----LSRYTTQFRVLALTATPGS  243


>sp|A2R345|DCL21_ASPNC Dicer-like protein 2-1 OS=Aspergillus niger 
(strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) OX=425011 
GN=dcl2-1 PE=3 SV=2
Length=1387

 Score = 62.0 bits (149),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 46/136 (34%), Positives = 69/136 (51%), Gaps = 11/136 (8%)

Query  351  LEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG-AGNS  409
            LE L+   +  FS      G+IF + R +  S++  L     +     R    +G +G  
Sbjct  375  LEFLDTKGEPNFS------GLIFAKQRATV-SVMEKLLSIHPVTKHRFRCASFVGWSGGG  427

Query  410  SQSTH---MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV  466
            S+      +  R Q++ + +F+ G  NL++AT V EEG+DI  C+VVV +    N  S V
Sbjct  428  SKDVLGELLDARMQRDTLSEFRTGQKNLIIATDVLEEGIDISACSVVVCFDKPPNLKSFV  487

Query  467  QARGRARADQSVYAFV  482
            Q RGRAR  QS YA +
Sbjct  488  QRRGRARHRQSTYAIM  503


 Score = 56.6 bits (135),  Expect = 8e-07, Method: Compositional matrix adjust.
 Identities = 59/220 (27%), Positives = 105/220 (48%), Gaps = 24/220 (11%)

Query  4    RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQH  63
            RSYQ E+   +L+ +NII+ + TG+GKT  A     + LE+     +  L   V L  Q 
Sbjct  20   RSYQVEMFEASLK-ENIIVTMGTGSGKTHIALLRIIKELESNPHKLIWFLTPTVALCLQ-  77

Query  64   GEEFRRMLDG-----RWTVTTLSGD--MGPRAGFGHLARCHDLLICTAELLQMALTSPEE  116
              +F+ + D        T+T+L        +  +  + +   +++ T  +L  A++    
Sbjct  78   --QFKFLSDNIPAVRARTLTSLDKVELWTEQPVWDAILKEMQVVVSTHAVLADAMS----  131

Query  117  EEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQR--AQPLPQVLGLTASPGTGG  174
               V++T   L++ DE HH  +    N IM  +    L+R  A+ +P++LGLTASP    
Sbjct  132  HGFVKITQLGLMIFDEAHHCMRRHPANKIMQDFYHPALERHGAEAVPKILGLTASPVVRS  191

Query  175  ASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQP  214
              +       +L++ +NLD  C  +P+    +L  H+ +P
Sbjct  192  NRQ------ELLKIESNLDAVC-KTPRTHRSELMTHTHRP  224


>sp|Q1DW80|DCL2_COCIM Dicer-like protein 2 OS=Coccidioides immitis 
(strain RS) OX=246410 GN=DCL2 PE=3 SV=3
Length=1435

 Score = 62.0 bits (149),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 83/172 (48%), Gaps = 17/172 (10%)

Query  345  GPENPKLEMLEKILQR----QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGL--QTVDI  398
            G +NP  E+  K+ +          N   GI+F   R    ++++ L Q   L  +T  I
Sbjct  386  GVQNPPDELSRKVHKLIDFLVLEHVNGSIGIVFAEER----TIVIMLAQLLSLHPRTKHI  441

Query  399  RAQLLIGAGNS-SQSTHMTQR----DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV  453
            +    +G+  S S+ + +T+     DQ   I   + G  +L++AT+V EEG+D+P C++V
Sbjct  442  KTTAFLGSSASVSRKSDITELHNPIDQSTAIDDLRTGKKDLIIATAVLEEGIDVPICDLV  501

Query  454  VRYGLLTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQ  505
            + + L  +  S +Q RGRAR   S +A       R    EL    +E  M+Q
Sbjct  502  ICFDLPKDLRSFIQRRGRARKKGSKFALFLHSEDRATSSEL--HLMEKTMKQ  551


 Score = 59.7 bits (143),  Expect = 8e-08, Method: Compositional matrix adjust.
 Identities = 57/180 (32%), Positives = 82/180 (46%), Gaps = 20/180 (11%)

Query  4    RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVV-VLVNRVHLVTQ  62
            R YQ E++  +L  +NII+ + TG+GKT  A    +R LE     K V  +   V LV Q
Sbjct  48   RGYQLEMLSESLR-QNIIVAMDTGSGKTEIAILRIQRELERCPAHKFVWFMAPTVALVEQ  106

Query  63   HGEEFR--------RMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP  114
                          R+L G   V+  S     +  +  +     ++I T ++L  AL++ 
Sbjct  107  QHSAISKQLPAFQTRLLTGAANVSHWST----KKIWDDILLNIRIVISTPQVLLDALSN-  161

Query  115  EEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQR--AQPLPQVLGLTASPGT  172
                 V+L   SL+V DE HH  +D   N IM  +     Q      LP +LGLTASP T
Sbjct  162  ---GFVDLHTISLLVFDEAHHCVRDAPANRIMRDFYHYHRQEEGTDGLPHILGLTASPTT  218


>sp|A1ZAW0|DCR2_DROME Endoribonuclease Dcr-2 OS=Drosophila melanogaster 
OX=7227 GN=Dcr-2 PE=1 SV=1
Length=1722

 Score = 61.2 bits (147),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 43/150 (29%), Positives = 77/150 (51%), Gaps = 11/150 (7%)

Query  349  PKLEMLEKILQRQFSSSNSPRGI---IFTRTRQSA---HSLLL-WLQQQQGLQTVDIRAQ  401
            PK++     L+  F+  + P+ I   +F   R +    + LLL ++Q    L+ V +  Q
Sbjct  365  PKVQRFLMSLKVSFADKD-PKDICCLVFVERRYTCKCIYGLLLNYIQSTPELRNV-LTPQ  422

Query  402  LLIGAGNSSQS--THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL  459
             ++G  N S    + + ++ Q+  IQ+F+DG  NL++ +SV EEG+D+  CN V     +
Sbjct  423  FMVGRNNISPDFESVLERKWQKSAIQQFRDGNANLMICSSVLEEGIDVQACNHVFILDPV  482

Query  460  TNEISMVQARGRARADQSVYAFVATEGSRE  489
                  VQ++GRAR  ++ +     +  RE
Sbjct  483  KTFNMYVQSKGRARTTEAKFVLFTADKERE  512


 Score = 59.3 bits (142),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 80/175 (46%), Gaps = 20/175 (11%)

Query  4    RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVD------GAKVVVLVNRV  57
            R YQ  ++   L   N I++LPTG+GKT  A  V KR  +  D      G + + + N V
Sbjct  9    RGYQLRLV-DHLTKSNGIVYLPTGSGKTFVAILVLKRFSQDFDKPIESGGKRALFMCNTV  67

Query  58   HLVTQHGEEFRRMLDGRWTVTTLSGDMG----PRAGFGHLARCHDLLICTAELLQMALTS  113
             L  Q     RR  +  + V    G+ G     R  +    + + +L+ TA++    +T 
Sbjct  68   ELARQQAMAVRRCTN--FKVGFYVGEQGVDDWTRGMWSDEIKKNQVLVGTAQVFLDMVT-  124

Query  114  PEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTA  168
               + +V L+  S++++DECHH      +   M  +    +     LP+V+GLT 
Sbjct  125  ---QTYVALSSLSVVIIDECHHGTGHHPFREFMRLF---TIANQTKLPRVVGLTG  173


>sp|A7TSV4|MPH1_VANPO ATP-dependent DNA helicase MPH1 OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=MPH1 PE=3 SV=1
Length=1012

 Score = 60.1 bits (144),  Expect = 5e-08, Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 64/120 (53%), Gaps = 3/120 (3%)

Query  399  RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL  458
            R+    G+   +Q + M Q+ Q+EVI KF++G  N+LV TS+ EEGLDI   ++++ +  
Sbjct  535  RSSRRTGSSEEAQISGMNQKQQKEVISKFKNGDYNVLVCTSIGEEGLDIGEVDMIICFDT  594

Query  459  LTNEISMVQARGRA--RADQSVYAFVATEGSRELKRELIN-EALETLMEQAVAAVQKMDQ  515
              + I  +Q  GR   + D  +    +   SR+ ++ + +   L+ L+ Q     +K D+
Sbjct  595  TGSPIKNIQRMGRTGRKRDGKILLLFSGNESRKFEKAMEDYYDLQRLIGQNFVEYKKSDR  654


>sp|A6ZVS0|MPH1_YEAS7 ATP-dependent DNA helicase MPH1 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=MPH1 PE=3 SV=1
Length=993

 Score = 59.7 bits (143),  Expect = 7e-08, Method: Compositional matrix adjust.
 Identities = 57/223 (26%), Positives = 101/223 (45%), Gaps = 40/223 (18%)

Query  295  DTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPEN-PKLEM  353
            + V+ +D++A  Q         +  I   + R    FD    E+ +   H P+   K+E 
Sbjct  463  EIVKFIDSVANDQ--------IRPHIFIGQARAKEGFD----EVKYTRKHAPKGRKKVER  510

Query  354  LEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQST  413
            L +  Q +F  +         RT+++A+  L              R+    G+   +Q +
Sbjct  511  LHRQEQEKFLEAE--------RTKRAANDKLE-------------RSARRTGSSEEAQIS  549

Query  414  HMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA-  472
             M Q+ Q+EVI  F+ G  N+LV TS+ EEGLDI   ++++ Y   ++ I  +Q  GR  
Sbjct  550  GMNQKMQKEVIHNFKKGEYNVLVCTSIGEEGLDIGEVDLIICYDTTSSPIKNIQRMGRTG  609

Query  473  -RADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMD  514
             + D  +    ++  S + +R +  E   TL  QA+ + Q +D
Sbjct  610  RKRDGKIVLLFSSNESYKFERAM--EDYSTL--QALISKQCID  648


 Score = 34.3 bits (77),  Expect = 5.0, Method: Compositional matrix adjust.
 Identities = 19/62 (31%), Positives = 31/62 (50%), Gaps = 1/62 (2%)

Query  2    ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVT  61
            E+R YQ+ ++  +L  +N +  +PTG GKT  A+ V   +      AK++       LV 
Sbjct  86   EVRDYQYTIVHKSL-FQNTLCAIPTGMGKTFIASTVMLNYFRWTKKAKIIFTAPTRPLVA  144

Query  62   QH  63
            Q 
Sbjct  145  QQ  146


>sp|P40562|MPH1_YEAST ATP-dependent DNA helicase MPH1 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=MPH1 
PE=1 SV=1
Length=993

 Score = 59.7 bits (143),  Expect = 7e-08, Method: Compositional matrix adjust.
 Identities = 57/221 (26%), Positives = 100/221 (45%), Gaps = 40/221 (18%)

Query  297  VRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPEN-PKLEMLE  355
            V+ +D++A  Q         +  I   + R    FD    E+ +   H P+   K+E L 
Sbjct  465  VKFIDSVADDQ--------IRPHIFIGQARAKEGFD----EVKYTRKHAPKGRKKVERLH  512

Query  356  KILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHM  415
            +  Q +F  +         RT+++A+  L              R+    G+   +Q + M
Sbjct  513  RQEQEKFLEAE--------RTKRAANDKLE-------------RSARRTGSSEEAQISGM  551

Query  416  TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA--R  473
             Q+ Q+EVI  F+ G  N+LV TS+ EEGLDI   ++++ Y   ++ I  +Q  GR   +
Sbjct  552  NQKMQKEVIHNFKKGEYNVLVCTSIGEEGLDIGEVDLIICYDTTSSPIKNIQRMGRTGRK  611

Query  474  ADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMD  514
             D  +    ++  S + +R +  E   TL  QA+ + Q +D
Sbjct  612  RDGKIVLLFSSNESYKFERAM--EDYSTL--QALISKQCID  648


 Score = 34.3 bits (77),  Expect = 5.0, Method: Compositional matrix adjust.
 Identities = 19/62 (31%), Positives = 31/62 (50%), Gaps = 1/62 (2%)

Query  2    ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVT  61
            E+R YQ+ ++  +L  +N +  +PTG GKT  A+ V   +      AK++       LV 
Sbjct  86   EVRDYQYTIVHKSL-FQNTLCAIPTGMGKTFIASTVMLNYFRWTKKAKIIFTAPTRPLVA  144

Query  62   QH  63
            Q 
Sbjct  145  QQ  146


>sp|Q8GY84|RH10_ARATH DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis 
thaliana OX=3702 GN=RH10 PE=1 SV=2
Length=456

 Score = 56.6 bits (135),  Expect = 4e-07, Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 52/108 (48%), Gaps = 15/108 (14%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            +IFTRT      L L L+   G + + I  Q             MTQ  +   + KF+ G
Sbjct  264  MIFTRTCDGTRFLALVLRSL-GFRAIPISGQ-------------MTQSKRLGALNKFKAG  309

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQS  477
              N+LV T VA  GLDIP  +VV+ Y + TN    +   GR ARA +S
Sbjct  310  ECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRS  357


>sp|Q6CB69|DED1_YARLI ATP-dependent RNA helicase DED1 OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DED1 PE=3 
SV=1
Length=618

 Score = 56.6 bits (135),  Expect = 6e-07, Method: Compositional matrix adjust.
 Identities = 42/128 (33%), Positives = 64/128 (50%), Gaps = 16/128 (13%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            ++F  T++ A  L   LQ +      D  A  + G          +QRD++  ++ F+DG
Sbjct  422  LVFVETKRGADYLCDVLQSE------DFPATSIHG--------DRSQRDRERALEMFRDG  467

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA-DQSVYAFVATEGSR  488
            T  +LVAT+VA  GLDIP+   VV Y L T+    V   GR  RA +  +       G++
Sbjct  468  TTPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNK  527

Query  489  ELKRELIN  496
             + RELI+
Sbjct  528  GIVRELID  535


>sp|A3LS22|RRP3_PICST ATP-dependent rRNA helicase RRP3 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=RRP3 PE=3 SV=3
Length=484

 Score = 55.8 bits (133),  Expect = 8e-07, Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 58/110 (53%), Gaps = 19/110 (17%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQ  428
            IIF RTR  AH+           Q   I  ++L   G S+   H  +TQ  +   + KF+
Sbjct  314  IIFARTR--AHT-----------QRTSILCRIL---GFSAVPLHGDLTQAQRLGSLNKFK  357

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQS  477
             GT N+L+AT VA  GLDIP  +VV+ Y + T+  + V   GR ARA +S
Sbjct  358  SGTANILIATDVAARGLDIPSVDVVINYDIPTDSKAYVHRVGRTARAGRS  407


>sp|P96130|RECG_TREPA ATP-dependent DNA helicase RecG OS=Treponema 
pallidum (strain Nichols) OX=243276 GN=recG PE=3 SV=1
Length=686

 Score = 55.8 bits (133),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 10/76 (13%)

Query  413  THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQ  467
            + MT+ +QQ +++ F +GT+++LVATSV E G+D+P+ N +V     R+GL     ++ Q
Sbjct  529  SKMTEEEQQRIMKYFSEGTVHILVATSVVEVGVDVPNANCIVIEHAERFGL----SALHQ  584

Query  468  ARGR-ARADQSVYAFV  482
             RGR  R D   Y F+
Sbjct  585  LRGRVGRGDVQSYCFL  600


>sp|Q0CIQ3|RRP3_ASPTN ATP-dependent rRNA helicase rrp3 OS=Aspergillus 
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=rrp3 
PE=3 SV=2
Length=445

 Score = 55.1 bits (131),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 55/113 (49%), Gaps = 15/113 (13%)

Query  370  GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD  429
            GIIFTRT      L + L+   G   + I  QL       SQS  +        + KF+ 
Sbjct  269  GIIFTRTVHETQRLSIMLRNL-GFPAIPIHGQL-------SQSARLAS------LNKFRA  314

Query  430  GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF  481
             + NLL+AT VA  GLDIP  + V+ Y L  +  + +   GR ARA +S  AF
Sbjct  315  RSRNLLIATDVAARGLDIPAVDYVLNYDLPQDSKTYIHRVGRTARAGKSGIAF  367


>sp|A7TKR8|DED1_VANPO ATP-dependent RNA helicase DED1 OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=DED1 PE=3 SV=1
Length=650

 Score = 54.7 bits (130),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 52/193 (27%), Positives = 83/193 (43%), Gaps = 28/193 (15%)

Query  363  SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE  422
            S+SN    +IF  T++ A  L  +L  Q      D RA  + G          TQ +++ 
Sbjct  413  SASNDGLTLIFVETKRMADELTDFLIMQ------DFRATAIHG--------DRTQSERER  458

Query  423  VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGRARADQSVY  479
             +  F++G  NLLVAT+VA  GLDIP+   VV Y L   + + +  +   GRA       
Sbjct  459  ALAAFKNGNANLLVATAVAARGLDIPNVTHVVNYDLPSDIDDYVHRIGRTGRAGNTGVAT  518

Query  480  AFVATEGSRELKR---ELINEA-------LETLMEQAVAAVQKMDQAEYQAKIRDLQQAA  529
            AF    G+R + +   EL+ EA       L  +M ++    +    +      RD +++ 
Sbjct  519  AFF-NRGNRNIVKGMYELLAEANQEIPPFLNDVMRESGRGGRTSGFSSRNNSNRDYRRSG  577

Query  530  LTKRAAQAAQREN  542
                 +    R N
Sbjct  578  SNNGGSWGNSRSN  590


>sp|Q55804|CRHR_SYNY3 RNA helicase CrhR OS=Synechocystis sp. (strain 
ATCC 27184 / PCC 6803 / Kazusa) OX=1111708 GN=crhR PE=1 
SV=1
Length=492

 Score = 54.3 bits (129),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 85/176 (48%), Gaps = 24/176 (14%)

Query  356  KILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH-  414
            K LQ      +    IIF RT+Q+A  L   LQ+                AG+S    H 
Sbjct  234  KALQPILEMEDPESAIIFVRTKQTAADLTSRLQE----------------AGHSVDEYHG  277

Query  415  -MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-A  472
             ++Q  ++ ++ +F+DG + L+VAT +A  GLD+ + + VV + L  N  + +   GR  
Sbjct  278  NLSQSQRERLVHRFRDGKIKLVVATDIAARGLDVNNLSHVVNFDLPDNAETYIHRIGRTG  337

Query  473  RADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK-IRDLQQ  527
            RA ++  A    E    + R L+  ++E  ++Q +      ++++ +AK I  LQ+
Sbjct  338  RAGKTGKAIALVE---PIDRRLLR-SIENRLKQQIEVCTIPNRSQVEAKRIEKLQE  389


>sp|Q4I7K4|DED1_GIBZE ATP-dependent RNA helicase DED1 OS=Gibberella 
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / 
NRRL 31084 / PH-1) OX=229533 GN=DED1 PE=3 SV=1
Length=675

 Score = 54.3 bits (129),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 41/130 (32%), Positives = 63/130 (48%), Gaps = 20/130 (15%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQ  428
            +IF  T++ A SL                +  LI     + S H   TQR+++  ++ F+
Sbjct  449  LIFVETKRMADSL----------------SDFLINQNFPATSIHGDRTQRERERALEFFR  492

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA-DQSVYAFVATEG  486
            +G   +LVAT+VA  GLDIPH   V+ Y L T+    V   GR  RA +  +       G
Sbjct  493  NGRCPILVATAVAARGLDIPHVTHVINYDLPTDVDDYVHRIGRTGRAGNTGIATAFFNRG  552

Query  487  SRELKRELIN  496
            +R + REL++
Sbjct  553  NRGIVRELMD  562


>sp|Q54TJ4|DDX27_DICDI Probable ATP-dependent RNA helicase ddx27 
OS=Dictyostelium discoideum OX=44689 GN=ddx27 PE=3 SV=1
Length=783

 Score = 53.9 bits (128),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 72/141 (51%), Gaps = 18/141 (13%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            IIF R+++  H L +      GL   D++A  L G        +++Q  + + +Q+F+DG
Sbjct  440  IIFCRSKKEVHRLRIIF----GLS--DLKAAELHG--------NLSQEQRFDSLQQFRDG  485

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGRARADQSVYAFVATEGS  487
             +N L+A+ VA  GLDI     V+ Y +   + N I  V    RA  D    +F+ T+  
Sbjct  486  QVNYLLASDVASRGLDIIGVKTVINYNMPNNMANYIHRVGRTARAGMDGKSCSFI-TDND  544

Query  488  RELKRELINEALETLMEQAVA  508
            R+L ++++ +A      ++V+
Sbjct  545  RKLLKDIVTKARNKAKSRSVS  565


>sp|Q0UWA6|DED1_PHANO ATP-dependent RNA helicase DED1 OS=Phaeosphaeria 
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) 
OX=321614 GN=DED1 PE=3 SV=1
Length=696

 Score = 53.5 bits (127),  Expect = 5e-06, Method: Compositional matrix adjust.
 Identities = 41/130 (32%), Positives = 64/130 (49%), Gaps = 20/130 (15%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQ  428
            +IF  T++ A SL                +  LI  G  + S H   TQR++++ ++ F+
Sbjct  464  LIFVETKRMADSL----------------SDFLINQGFPATSIHGDRTQREREKALEMFR  507

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA-DQSVYAFVATEG  486
             G   +LVAT+VA  GLDIP+   VV Y L T+    V   GR  RA +  +       G
Sbjct  508  SGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRG  567

Query  487  SRELKRELIN  496
            +R + R+L++
Sbjct  568  NRGVVRDLLD  577


>sp|Q6CQX2|MPH1_KLULA ATP-dependent DNA helicase MPH1 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 
1267 / NRRL Y-1140 / WM37) OX=284590 GN=MPH1 PE=3 SV=2
Length=1002

 Score = 53.5 bits (127),  Expect = 5e-06, Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 0/68 (0%)

Query  405  GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
            G+   +Q + M Q+ Q++VI  F+ G  N+LV TS+ EEGLDI   ++++ +   ++ I 
Sbjct  555  GSSEEAQLSGMNQKQQKKVISDFKKGIYNVLVCTSIGEEGLDIGEVDLIICFDSTSSPIK  614

Query  465  MVQARGRA  472
             +Q  GR 
Sbjct  615  NIQRMGRT  622


 Score = 37.7 bits (86),  Expect = 0.44, Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 84/183 (46%), Gaps = 23/183 (13%)

Query  2    ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVT  61
            E+R YQ++++  AL  +N++  +PTG GKT  A+ V   +      +K++       LV 
Sbjct  100  EVRQYQYDIVRCAL-FENVLCAIPTGTGKTFIASTVMLNYYRWTKSSKIIFTAPTRPLVA  158

Query  62   QHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAEL----LQMALTSPEEE  117
            Q  +    +    ++ T +  D   R     + +   +   T ++    L+  + +P++ 
Sbjct  159  QQIKACLGITGIPYSDTAILLDKS-RKNREEIWQQKRVFFTTPQVVENDLKRGVLNPKD-  216

Query  118  EHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASK  177
                     L+V+DE H    +  Y V ++++++    R     ++L LTA+P    A+ 
Sbjct  217  -------VVLLVIDEAHRARGNYAY-VELTKFID----RFNTSYRLLALTATP----AAD  260

Query  178  LDG  180
            L+G
Sbjct  261  LEG  263


>sp|P0CR00|RRP3_CRYNJ ATP-dependent rRNA helicase RRP3 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=RRP3 PE=3 SV=1
Length=484

 Score = 53.1 bits (126),  Expect = 6e-06, Method: Compositional matrix adjust.
 Identities = 41/121 (34%), Positives = 60/121 (50%), Gaps = 18/121 (15%)

Query  358  LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ  417
            L  + SSS+    +IFTRT   +  L + L++  G   + +  Q             MTQ
Sbjct  271  LANELSSSSM---MIFTRTVADSQRLSIILRRL-GFPAIPLHGQ-------------MTQ  313

Query  418  RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQ  476
              +   + KF+ G  ++LVAT VA  GLDIP  ++V+ Y + TN    V   GR ARA +
Sbjct  314  SLRLASLNKFKSGGRSILVATDVASRGLDIPLVDLVINYDMPTNSKDYVHRVGRTARAGR  373

Query  477  S  477
            S
Sbjct  374  S  374


>sp|P0CR01|RRP3_CRYNB ATP-dependent rRNA helicase RRP3 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=RRP3 PE=3 SV=1
Length=484

 Score = 53.1 bits (126),  Expect = 6e-06, Method: Compositional matrix adjust.
 Identities = 41/121 (34%), Positives = 60/121 (50%), Gaps = 18/121 (15%)

Query  358  LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ  417
            L  + SSS+    +IFTRT   +  L + L++  G   + +  Q             MTQ
Sbjct  271  LANELSSSSM---MIFTRTVADSQRLSIILRRL-GFPAIPLHGQ-------------MTQ  313

Query  418  RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQ  476
              +   + KF+ G  ++LVAT VA  GLDIP  ++V+ Y + TN    V   GR ARA +
Sbjct  314  SLRLASLNKFKSGGRSILVATDVASRGLDIPLVDLVINYDMPTNSKDYVHRVGRTARAGR  373

Query  477  S  477
            S
Sbjct  374  S  374


>sp|P21507|SRMB_ECOLI ATP-dependent RNA helicase SrmB OS=Escherichia 
coli (strain K12) OX=83333 GN=srmB PE=1 SV=1
Length=444

 Score = 53.1 bits (126),  Expect = 6e-06, Method: Compositional matrix adjust.
 Identities = 38/137 (28%), Positives = 58/137 (42%), Gaps = 15/137 (11%)

Query  351  LEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSS  410
            LE    +L        + R I+F R R+  H L  WL++               G  N  
Sbjct  232  LEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREA--------------GINNCY  277

Query  411  QSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARG  470
                M Q  + E I++  +G +N+LVAT VA  G+DIP  + V  + +  +  + +   G
Sbjct  278  LEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIG  337

Query  471  R-ARADQSVYAFVATEG  486
            R ARA +   A    E 
Sbjct  338  RTARAGRKGTAISLVEA  354


>sp|Q6BQ61|RRP3_DEBHA ATP-dependent rRNA helicase RRP3 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 
/ JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=RRP3 PE=3 SV=2
Length=477

 Score = 52.8 bits (125),  Expect = 7e-06, Method: Compositional matrix adjust.
 Identities = 39/109 (36%), Positives = 54/109 (50%), Gaps = 17/109 (16%)

Query  371  IIFTRTRQSAHS-LLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD  429
            IIFTRT   AHS     L +  G   V +  QL             TQ  +   + KF+ 
Sbjct  308  IIFTRT--CAHSQRTALLARILGFSAVPLHGQL-------------TQAQRLGSLNKFKA  352

Query  430  GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQS  477
            G  N+L+AT VA  GLDIP  ++V+ Y + T+  + +   GR ARA +S
Sbjct  353  GKANILIATDVAARGLDIPSVDIVINYDIPTDSKAYIHRVGRTARAGKS  401


>sp|A6QRQ7|RRP3_AJECN ATP-dependent rRNA helicase RRP3 OS=Ajellomyces 
capsulatus (strain NAm1 / WU24) OX=2059318 GN=RRP3 PE=3 
SV=1
Length=485

 Score = 52.8 bits (125),  Expect = 8e-06, Method: Compositional matrix adjust.
 Identities = 37/113 (33%), Positives = 59/113 (52%), Gaps = 15/113 (13%)

Query  370  GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD  429
             I+FTRT      L + L+   G  ++ +  QL       SQS+ +        + KF+ 
Sbjct  302  AIVFTRTVNETQRLAILLRAL-GFGSIPLHGQL-------SQSSRLG------ALSKFRS  347

Query  430  GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF  481
             + ++LVAT VA  GLDIP  +VV+ + L ++  + +   GR ARA +S +AF
Sbjct  348  RSRDILVATDVAARGLDIPSVDVVLNFDLPSDSKTYIHRVGRTARAGKSGHAF  400


>sp|Q54VT4|DDX47_DICDI Probable ATP-dependent RNA helicase ddx47 
OS=Dictyostelium discoideum OX=44689 GN=ddx47 PE=3 SV=1
Length=546

 Score = 52.8 bits (125),  Expect = 9e-06, Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 52/108 (48%), Gaps = 15/108 (14%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            IIFT T  S+  + + L+               +G G    +  M Q  +   + KF+ G
Sbjct  362  IIFTSTCASSTKIAMMLRN--------------LGFGAIPINGDMDQGKRLASLNKFKQG  407

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQS  477
            T ++LVAT VA  GLDIP  ++V+ Y + TN    V   GR ARA  S
Sbjct  408  TKSILVATDVAARGLDIPSVDLVINYDVPTNSKEYVHRVGRTARAGNS  455


>sp|A0A1D6LAB7|RH3B_MAIZE DEAD-box ATP-dependent RNA helicase 
3B, chloroplastic OS=Zea mays OX=4577 GN=RH3B PE=2 SV=1
Length=743

 Score = 52.8 bits (125),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 41/160 (26%), Positives = 76/160 (48%), Gaps = 32/160 (20%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            I+FTRT++ A  + L L       T  I ++ L G         ++Q  ++  +  F+ G
Sbjct  339  IVFTRTKKDADEVSLAL-------TNSIASEALHG--------DISQHQRERTLNGFRQG  383

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR----ARADQSVYAFVATEG  486
               +LVAT VA  GLDIP+ ++++ Y L  +  + V   GR     +A  ++  F +++ 
Sbjct  384  KFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTSSQK  443

Query  487  S--RELKREL-----------INEALETLMEQAVAAVQKM  513
               + L+R++           I E LE+  E  +A ++ +
Sbjct  444  RTVKSLERDVGCNFEFISPPSIEEVLESSAEHVIATLRGV  483


>sp|Q1E1N5|RRP3_COCIM ATP-dependent rRNA helicase RRP3 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=RRP3 PE=3 SV=1
Length=474

 Score = 52.4 bits (124),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 39/112 (35%), Positives = 56/112 (50%), Gaps = 15/112 (13%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            IIFTRT      L + L+   G   + +  QL       SQS  +        + KF+  
Sbjct  292  IIFTRTVNETQRLAILLRAL-GFGAIPLHGQL-------SQSARLG------ALGKFRSR  337

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF  481
            + N+LVAT VA  GLDIP  ++V+ Y L ++  + +   GR ARA +S  AF
Sbjct  338  SRNILVATDVAARGLDIPSVDLVLNYDLPSDSKTYIHRVGRTARAGKSGRAF  389


>sp|A5DQF1|RRP3_PICGU ATP-dependent rRNA helicase RRP3 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=RRP3 PE=3 
SV=2
Length=475

 Score = 52.4 bits (124),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 38/109 (35%), Positives = 54/109 (50%), Gaps = 17/109 (16%)

Query  371  IIFTRTRQSAHS-LLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD  429
            I+FTRT   AH+     L +  G   V +  QL             TQ  +   + KF+ 
Sbjct  307  IVFTRT--CAHTQRSTLLARILGFSAVPLHGQL-------------TQSQRLGSLNKFKS  351

Query  430  GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQS  477
            G  N+L+AT VA  GLDIP  +VV+ Y + T+  + +   GR ARA +S
Sbjct  352  GKANILIATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGKS  400


>sp|A0A1D6GDY8|RH3A_MAIZE DEAD-box ATP-dependent RNA helicase 
3A, chloroplastic OS=Zea mays OX=4577 GN=RH3A PE=3 SV=1
Length=745

 Score = 52.8 bits (125),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 41/160 (26%), Positives = 75/160 (47%), Gaps = 32/160 (20%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            I+FTRT++ A  + L L       T  I ++ L G         ++Q  ++  +  F+ G
Sbjct  339  IVFTRTKKDADEVSLAL-------TTSIASEALHG--------DISQHQRERTLNGFRQG  383

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR----ARADQSVYAFVATEG  486
               +LVAT VA  GLDIP+ ++++ Y L  +  + V   GR     +A  ++  F +++ 
Sbjct  384  KFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTSSQK  443

Query  487  SR--ELKREL-----------INEALETLMEQAVAAVQKM  513
                 L+R++           I E LE+  E  +A ++ +
Sbjct  444  RTVMSLERDVGCKFEFISPPSIEEVLESSAEHVIATLRGV  483


>sp|Q6CH58|RRP3_YARLI ATP-dependent rRNA helicase RRP3 OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=RRP3 
PE=3 SV=1
Length=480

 Score = 52.4 bits (124),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 18/112 (16%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            IIF RT+     + L L+               +G G       ++Q  +   + KF+ G
Sbjct  307  IIFARTKSDTQRISLLLRN--------------LGYGAIPLHGDLSQTARLGALNKFKSG  352

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR----ARADQSV  478
            + N+L+AT VA  GLDIP  ++V+ Y + ++  S +   GR     RA +SV
Sbjct  353  SRNILIATDVASRGLDIPAVDLVINYDIPSDSKSYIHRVGRTARAGRAGKSV  404


>sp|Q2HBE7|DED1_CHAGB ATP-dependent RNA helicase DED1 OS=Chaetomium 
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 
6347 / NRRL 1970) OX=306901 GN=DED1 PE=3 SV=1
Length=688

 Score = 52.4 bits (124),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 40/130 (31%), Positives = 63/130 (48%), Gaps = 20/130 (15%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQ  428
            +IF  T++ A SL                +  LI     + S H   TQR+++  ++ F+
Sbjct  460  LIFVETKRMADSL----------------SDFLINQNFPATSIHGDRTQRERERALELFR  503

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA-DQSVYAFVATEG  486
            +G   +LVAT+VA  GLDIP+   V+ Y L T+    V   GR  RA +  +       G
Sbjct  504  NGKCPILVATAVAARGLDIPNVTHVINYDLPTDVDDYVHRIGRTGRAGNTGIATAFFNRG  563

Query  487  SRELKRELIN  496
            +R + REL++
Sbjct  564  NRGIVRELLD  573


>sp|A7EJY3|DED1_SCLS1 ATP-dependent RNA helicase ded1 OS=Sclerotinia 
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 
GN=ded1 PE=3 SV=1
Length=678

 Score = 52.0 bits (123),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 41/129 (32%), Positives = 62/129 (48%), Gaps = 20/129 (16%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQ  428
            +IF  T++ A SL                +  LI     + S H   TQR+++  ++ F+
Sbjct  449  LIFVETKRMADSL----------------SDFLINQNFPATSIHGDRTQRERERALEMFR  492

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA-DQSVYAFVATEG  486
            +G   +LVAT+VA  GLDIP+   VV Y L T+    V   GR  RA +  +       G
Sbjct  493  NGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGISTAFFNRG  552

Query  487  SRELKRELI  495
            +R + R+LI
Sbjct  553  NRGVVRDLI  561


>sp|Q5JKF2|RH40_ORYSJ DEAD-box ATP-dependent RNA helicase 40 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os01g0549400 PE=2 
SV=2
Length=792

 Score = 52.0 bits (123),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 44/142 (31%), Positives = 66/142 (46%), Gaps = 21/142 (15%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            KL  LE+IL+ Q S S   + +IF  T++    L   L +Q G   +          G+ 
Sbjct  381  KLRRLEQILRSQDSGS---KVLIFCTTKRMCDQLARTLTRQFGASAI---------HGDK  428

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT---NEISMV  466
            SQS      ++++V+  F+ G   +LVAT VA  GLDI    VV+ Y   T   + +  +
Sbjct  429  SQS------EREKVLSHFRSGRSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRI  482

Query  467  QARGRARADQSVYAFVATEGSR  488
               GRA A    Y F   + S+
Sbjct  483  GRTGRAGATGVAYTFFCDQDSK  504


>sp|Q0D8N0|RH53_ORYSJ DEAD-box ATP-dependent RNA helicase 53 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os07g0143700 PE=2 
SV=2
Length=602

 Score = 51.6 bits (122),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 34/119 (29%), Positives = 56/119 (47%), Gaps = 16/119 (13%)

Query  365  SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI  424
            +N  + I+FT+T++ A  L   + +    Q +                  ++Q  ++  +
Sbjct  326  ANGGKCIVFTQTKREADRLAYAMGRSYACQAL---------------HGDISQNQRERTL  370

Query  425  QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFV  482
              F+DG  N+LVAT VA  GLDIP+ ++V+ Y L       V   GR ARA +   A +
Sbjct  371  SGFRDGRFNILVATDVAARGLDIPNVDLVIHYELPNTSELFVHRSGRTARAGKKGSAIL  429


>sp|A6SEH9|DED1_BOTFB ATP-dependent RNA helicase ded1 OS=Botryotinia 
fuckeliana (strain B05.10) OX=332648 GN=ded1 PE=3 SV=1
Length=683

 Score = 51.6 bits (122),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 43/145 (30%), Positives = 68/145 (47%), Gaps = 26/145 (18%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQ  428
            +IF  T++ A SL                +  LI     + S H   TQR+++  ++ F+
Sbjct  449  LIFVETKRMADSL----------------SDFLINQNFPATSIHGDRTQRERERALEMFR  492

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA-DQSVYAFVATEG  486
            +G   +LVAT+VA  GLDIP+   VV Y L T+    V   GR  RA +  +       G
Sbjct  493  NGRCPILVATAVAARGLDIPNVKHVVNYDLPTDIDDYVHRIGRTGRAGNTGISTAFFNRG  552

Query  487  SRELKRELI------NEALETLMEQ  505
            +R + R+LI      N+ + + +E 
Sbjct  553  NRGVCRDLIELLKEANQEIPSFLEN  577


>sp|Q9P6U9|DED1_NEUCR ATP-dependent RNA helicase ded1 OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / 
DSM 1257 / FGSC 987) OX=367110 GN=drh-9 PE=3 SV=1
Length=688

 Score = 51.6 bits (122),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 64/137 (47%), Gaps = 22/137 (16%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQ  428
            +IF  T++ A SL                +  LI     + S H   TQR+++  ++ F+
Sbjct  457  LIFVETKRMADSL----------------SDFLINQNFPATSIHGDRTQRERERALEMFR  500

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGS  487
            +G   +LVAT+VA  GLDIP+   V+ Y L T+    V   GR  RA  +    +AT   
Sbjct  501  NGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTG---IATAFF  557

Query  488  RELKRELINEALETLME  504
                R ++ E LE L E
Sbjct  558  NRGNRGVVRELLELLKE  574


>sp|A4RHF1|DED1_PYRO7 ATP-dependent RNA helicase DED1 OS=Pyricularia 
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 
GN=DED1 PE=3 SV=2
Length=671

 Score = 51.6 bits (122),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 62/129 (48%), Gaps = 17/129 (13%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            +IF  T+++A  L  +LQ Q  L    I                 TQR+++  ++ F+ G
Sbjct  453  LIFVETKRNADELSDFLQNQN-LPATSIHGD-------------RTQRERERALEMFRTG  498

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQS--VYAFVATEGS  487
               +LVAT+VA  GLDIP+   V+ Y L T+    V   GR  RA  +    AF   + +
Sbjct  499  RCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFDMKDN  558

Query  488  RELKRELIN  496
              + +EL+N
Sbjct  559  SGVAQELLN  567


>sp|Q4IFI0|RRP3_GIBZE ATP-dependent rRNA helicase RRP3 OS=Gibberella 
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / 
NRRL 31084 / PH-1) OX=229533 GN=RRP3 PE=3 SV=1
Length=486

 Score = 51.2 bits (121),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 39/112 (35%), Positives = 56/112 (50%), Gaps = 15/112 (13%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            I+FTRT        +W  Q+     V I  + L G G       ++Q  +   + KF+ G
Sbjct  304  IVFTRT--------VWETQR-----VSILLRTL-GFGAIPLHGQLSQSSRLGALNKFRSG  349

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF  481
            T ++LVAT VA  GLDIP  +VV+ Y L  +  + +   GR ARA +S  A 
Sbjct  350  TRDILVATDVAARGLDIPSVDVVLNYDLPQDSKTYIHRVGRTARAGKSGVAI  401


>sp|Q0DB53|RH52A_ORYSJ DEAD-box ATP-dependent RNA helicase 52A 
OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0602400 PE=2 
SV=2
Length=602

 Score = 51.2 bits (121),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 47/163 (29%), Positives = 73/163 (45%), Gaps = 26/163 (16%)

Query  347  ENPKLEMLEKILQRQ-FSSSNS----PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQ  401
            +  K   L  +LQRQ    +NS    P  ++F  T++ A SL  WL  + G     I   
Sbjct  326  DGEKRGYLLDLLQRQSVGVANSKLQQPLTLVFVETKREADSLRYWLYSK-GFPATAIHGD  384

Query  402  LLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---  458
                          TQ++++  ++ F+ G   ++VAT VA  GLD+P+   V+ Y L   
Sbjct  385  -------------RTQQERESALRSFKTGLTPIMVATDVASRGLDVPNVAHVINYDLPKS  431

Query  459  LTNEISMVQARGRARADQSVYAFVATEGSRELKR---ELINEA  498
            + + +  +   GRA    S  AF  TE    L +   EL+ EA
Sbjct  432  IEDYVHRIGRTGRAGKAGSATAFF-TESDHSLAKGLLELMTEA  473


>sp|A7EML8|RRP3_SCLS1 ATP-dependent rRNA helicase rrp3 OS=Sclerotinia 
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 
GN=rrp3 PE=3 SV=1
Length=482

 Score = 51.2 bits (121),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 15/112 (13%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            IIFTRT      + + L+   G   + +  QL       SQS+ +        + KF+ G
Sbjct  300  IIFTRTVNETQRIAILLRTL-GFGAIPLHGQL-------SQSSRLG------ALNKFRAG  345

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF  481
            +  +LVAT VA  GLDIP  +VV+ Y +  +  + +   GR ARA +S +A 
Sbjct  346  SREILVATDVAARGLDIPSVDVVLNYDMPQDSKTYIHRVGRTARAGKSGHAI  397


>sp|Q5ACU6|RRP3_CANAL ATP-dependent rRNA helicase RRP3 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=RRP3 
PE=3 SV=3
Length=534

 Score = 51.2 bits (121),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 53/108 (49%), Gaps = 15/108 (14%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            I+FTRT   A    L L +  G   V +  QL       SQS  +        + KF+  
Sbjct  361  IVFTRTVAHAQRTAL-LARILGFNAVPLHGQL-------SQSQRLGS------LNKFKSN  406

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQS  477
              N+LVAT VA  GLDIP  +VV+ Y + T+  + +   GR ARA +S
Sbjct  407  QANILVATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRS  454


>sp|Q4P3U9|RRP3_USTMA ATP-dependent rRNA helicase RRP3 OS=Ustilago 
maydis (strain 521 / FGSC 9021) OX=237631 GN=RRP3 PE=3 
SV=2
Length=561

 Score = 51.2 bits (121),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 54/108 (50%), Gaps = 15/108 (14%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            I+FTRT   +  L + L+   G   + +  QL             +Q+ +   + KF+ G
Sbjct  357  IVFTRTVHDSQRLSILLRLL-GFPAIPLHGQL-------------SQQARLGALNKFKTG  402

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQS  477
              ++LVAT VA  GLDIP  ++VV Y + TN    +   GR ARA +S
Sbjct  403  GRSILVATDVASRGLDIPAVDLVVNYDIPTNSKDYIHRVGRTARAGRS  450


>sp|P19109|DDX17_DROME ATP-dependent RNA helicase p62 OS=Drosophila 
melanogaster OX=7227 GN=Rm62 PE=1 SV=3
Length=719

 Score = 51.2 bits (121),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 82/173 (47%), Gaps = 27/173 (16%)

Query  347  ENPKLEMLEKILQRQFSSSNSP-RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
            E  K E L+ +L   + +S SP + IIF  T++   +L+ +++      +  +R   +  
Sbjct  509  EFSKEEKLKTLLSDIYDTSESPGKIIIFVETKRRVDNLVRFIR------SFGVRCGAI--  560

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE---  462
             G+ SQS    +RD   V+++F+ G  N+LVAT VA  GLD+     V+ +    N    
Sbjct  561  HGDKSQS----ERD--FVLREFRSGKSNILVATDVAARGLDVDGIKYVINFDYPQNSEDY  614

Query  463  ISMVQARGRARADQSVYAFVATEGSRELK------REL---INEALETLMEQA  506
            I  +   GR+    + +AF     +++ K      RE    IN ALE L   +
Sbjct  615  IHRIGRTGRSNTKGTSFAFFTKNNAKQAKALVDVLREANQEINPALENLARNS  667


>sp|Q15N18|RHLB_PSEA6 ATP-dependent RNA helicase RhlB OS=Pseudoalteromonas 
atlantica (strain T6c / ATCC BAA-1087) OX=3042615 
GN=rhlB PE=3 SV=1
Length=421

 Score = 50.8 bits (120),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 52/182 (29%), Positives = 77/182 (42%), Gaps = 29/182 (16%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            + I+F  T+ S   +  WLQ          R  LL G         + Q  + ++++ F 
Sbjct  255  KAIVFANTKHSCEKVADWLQADGH------RVGLLSG--------DVPQNKRLKILEDFT  300

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGS  487
             G L++LVAT VA  GL IP  + V  Y L  +    V   GR  RA QS      +  S
Sbjct  301  SGKLDILVATDVAARGLHIPMVSHVFNYDLPDDAEDYVHRIGRTGRAGQS-----GSSIS  355

Query  488  RELKRELIN-EALETLMEQAVAAVQKMDQAEYQAK--IRDLQQAALTKRAAQAAQRENQR  544
               +R  +N  A+ET +E A+         EYQA   +RD+       +      R  Q+
Sbjct  356  FACERYALNLPAIETYIEHAIPVT------EYQADALLRDVTPPKPRHKKRMQNGRNPQK  409

Query  545  QQ  546
            +Q
Sbjct  410  RQ  411


>sp|Q1DJF0|DED1_COCIM ATP-dependent RNA helicase DED1 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=DED1 PE=3 SV=2
Length=665

 Score = 50.8 bits (120),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 64/130 (49%), Gaps = 22/130 (17%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQ  428
            +IF  T++ A SL                ++ LI     + + H   TQR+++  ++ F+
Sbjct  446  LIFVETKRMADSL----------------SEFLINQNFPATAIHGDRTQRERERALEYFR  489

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQS--VYAFVATE  485
            +G   +LVAT+VA  GLDIP+   VV Y L T+    V   GR  RA  +    AF    
Sbjct  490  NGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGLSTAFF-NR  548

Query  486  GSRELKRELI  495
            G+R + R+LI
Sbjct  549  GNRGVVRDLI  558


>sp|A6RW56|RRP3_BOTFB ATP-dependent rRNA helicase rrp3 OS=Botryotinia 
fuckeliana (strain B05.10) OX=332648 GN=rrp3 PE=3 SV=1
Length=486

 Score = 50.8 bits (120),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 15/112 (13%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            IIFTRT      + + L+   G   + +  QL       SQS+ +        + KF+ G
Sbjct  304  IIFTRTVNETQRIAILLRTL-GFGAIPLHGQL-------SQSSRLG------ALNKFRAG  349

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF  481
            +  +LVAT VA  GLDIP  +VV+ Y +  +  + +   GR ARA +S +A 
Sbjct  350  SREILVATDVAARGLDIPSVDVVLNYDVPQDSKTYIHRVGRTARAGKSGHAI  401


>sp|A1CXK7|DED1_NEOFI ATP-dependent RNA helicase ded1 OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / 
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=ded1 
PE=3 SV=1
Length=676

 Score = 50.8 bits (120),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 47/83 (57%), Gaps = 2/83 (2%)

Query  416  TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA  474
            TQR+++  ++ F+ G   +LVAT+VA  GLDIP+   V+ Y L T+    V   GR  RA
Sbjct  487  TQRERERALEMFRSGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRA  546

Query  475  -DQSVYAFVATEGSRELKRELIN  496
             +  +       G+R + RELI+
Sbjct  547  GNTGIATAFFNRGNRGVVRELID  569


>sp|Q9LUW6|RH9_ARATH DEAD-box ATP-dependent RNA helicase 9, mitochondrial 
OS=Arabidopsis thaliana OX=3702 GN=RH9 PE=1 SV=1
Length=610

 Score = 50.8 bits (120),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 30/101 (30%), Positives = 51/101 (50%), Gaps = 15/101 (15%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            I+FT+T++ A  L   L +         + + L G         ++Q  ++  +  F+DG
Sbjct  365  IVFTQTKRDADRLAFGLAKS-------YKCEALHG--------DISQAQRERTLAGFRDG  409

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
              ++LVAT VA  GLD+P+ ++V+ Y L  N  + V   GR
Sbjct  410  NFSILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGR  450


>sp|A2RB17|RRP3_ASPNC ATP-dependent rRNA helicase rrp3 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=rrp3 PE=3 SV=1
Length=467

 Score = 50.4 bits (119),  Expect = 4e-05, Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 57/116 (49%), Gaps = 17/116 (15%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            IIFTRT      L  +L +  G   + +  QL       SQS  +        + KF+  
Sbjct  292  IIFTRTVNETQRLA-FLLRALGFGAIPLHGQL-------SQSARLG------ALGKFRAR  337

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYA--FVA  483
            + N+LVAT VA  GLDIP  +VV+ + L  +  S V   GR ARA +S  A  FVA
Sbjct  338  SRNILVATDVAARGLDIPSVDVVLNFDLPGDSPSYVHRVGRTARAGKSGLAISFVA  393


>sp|Q9LUW5|RH53_ARATH DEAD-box ATP-dependent RNA helicase 53, 
mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RH53 PE=1 SV=1
Length=616

 Score = 50.4 bits (119),  Expect = 4e-05, Method: Compositional matrix adjust.
 Identities = 30/101 (30%), Positives = 51/101 (50%), Gaps = 15/101 (15%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            I+FT+T++ A  L   L +         + + L G         ++Q  ++  +  F+DG
Sbjct  353  IVFTQTKRDADRLSYALARS-------FKCEALHG--------DISQSQRERTLAGFRDG  397

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
              N+LVAT VA  GLD+P+ ++++ Y L  N  + V   GR
Sbjct  398  HFNILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGR  438


>sp|A8F0V9|UVRB_RICM5 UvrABC system protein B OS=Rickettsia massiliae 
(strain Mtu5) OX=416276 GN=uvrB PE=3 SV=1
Length=661

 Score = 50.4 bits (119),  Expect = 5e-05, Method: Compositional matrix adjust.
 Identities = 30/109 (28%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            R ++ T T++ A  L  +LQ+              +    S   +H+   ++ E+++  +
Sbjct  447  RVLVTTLTKKMAEDLTAYLQE--------------LKYKTSYLHSHVHTLERIEILRDLR  492

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
             GT+++LV  ++  EGLDIP C +V      + G L +E+S++Q  GRA
Sbjct  493  QGTIDILVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGRA  541


>sp|A8EXS6|UVRB_RICCK UvrABC system protein B OS=Rickettsia canadensis 
(strain McKiel) OX=293613 GN=uvrB PE=3 SV=1
Length=661

 Score = 50.4 bits (119),  Expect = 5e-05, Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 19/109 (17%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            R ++ T T++ A  L  +LQ+            L   +     + H  +R   E+++  +
Sbjct  447  RVLVTTLTKKMAEDLTTYLQE------------LKYKSSYLHSNVHTLER--LEILRDLR  492

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
             GT+N+LV  ++  EGLDIP C +V      + G L +E+S++Q  GRA
Sbjct  493  QGTINILVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGRA  541


>sp|A2QI25|DED1_ASPNC ATP-dependent RNA helicase ded1 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=ded1 PE=3 SV=1
Length=678

 Score = 50.4 bits (119),  Expect = 5e-05, Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 63/128 (49%), Gaps = 16/128 (13%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            +IF  T++ A SL  +L  Q+        A  + G          TQR+++  ++ F+ G
Sbjct  453  LIFVETKRMADSLSDFLLNQR------FPATAIHG--------DRTQRERERALEMFRSG  498

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA-DQSVYAFVATEGSR  488
               +LVAT+VA  GLDIP+   V+ Y L T+    V   GR  RA +  +       G+R
Sbjct  499  RCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNR  558

Query  489  ELKRELIN  496
             + R+LI+
Sbjct  559  GVVRDLID  566


>sp|Q0CLJ6|DED1_ASPTN ATP-dependent RNA helicase ded1 OS=Aspergillus 
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=ded1 
PE=3 SV=1
Length=674

 Score = 50.4 bits (119),  Expect = 5e-05, Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 63/128 (49%), Gaps = 16/128 (13%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            +IF  T++ A SL  +L  Q+        A  + G          TQR+++  ++ F+ G
Sbjct  452  LIFVETKRMADSLSDFLLNQR------FPATAIHG--------DRTQRERERALEMFRSG  497

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA-DQSVYAFVATEGSR  488
               +LVAT+VA  GLDIP+   V+ Y L T+    V   GR  RA +  +       G+R
Sbjct  498  RCPILVATAVAASGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNR  557

Query  489  ELKRELIN  496
             + R+LI+
Sbjct  558  GVVRDLID  565


>sp|P23394|PRP28_YEAST Pre-mRNA-splicing ATP-dependent RNA helicase 
PRP28 OS=Saccharomyces cerevisiae (strain ATCC 204508 
/ S288c) OX=559292 GN=PRP28 PE=1 SV=2
Length=588

 Score = 50.1 bits (118),  Expect = 5e-05, Method: Compositional matrix adjust.
 Identities = 36/130 (28%), Positives = 66/130 (51%), Gaps = 16/130 (12%)

Query  368  PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF  427
            P  IIF   +Q+A     WL ++   +T +++  +L G+ +  Q  H         +Q F
Sbjct  437  PPIIIFINYKQTAD----WLAEKFQKET-NMKVTILHGSKSQEQREHS--------LQLF  483

Query  428  QDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGRARADQSVYAFVAT  484
            +   + +++AT+VA  GLDIP+ ++VV + +   + + I  +   GRA  + +  +FV+ 
Sbjct  484  RTNKVQIMIATNVAARGLDIPNVSLVVNFQISKKMDDYIHRIGRTGRAANEGTAVSFVSA  543

Query  485  EGSRELKREL  494
                 L REL
Sbjct  544  AEDESLIREL  553


>sp|Q2UGK3|DED1_ASPOR ATP-dependent RNA helicase ded1 OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=ded1 
PE=3 SV=1
Length=675

 Score = 50.1 bits (118),  Expect = 6e-05, Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 63/128 (49%), Gaps = 16/128 (13%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            +IF  T++ A SL  +L  Q+        A  + G          TQR+++  ++ F+ G
Sbjct  452  LIFVETKRMADSLSDFLLNQR------FPATAIHG--------DRTQRERERALEMFRSG  497

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA-DQSVYAFVATEGSR  488
               +LVAT+VA  GLDIP+   V+ Y L T+    V   GR  RA +  +       G+R
Sbjct  498  RCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNR  557

Query  489  ELKRELIN  496
             + R+LI+
Sbjct  558  GVVRDLID  565


>sp|Q0DM51|RH3_ORYSJ DEAD-box ATP-dependent RNA helicase 3, chloroplastic 
OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0827700 
PE=2 SV=2
Length=758

 Score = 50.1 bits (118),  Expect = 6e-05, Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 75/160 (47%), Gaps = 32/160 (20%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            I+FT+T++ A  + L L       T  I ++ L G         ++Q  ++  +  F+ G
Sbjct  355  IVFTKTKRDADEVSLAL-------TNSIASEALHG--------DISQHQRERTLNGFRQG  399

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGS--  487
               +LVAT VA  GLDIP+ ++++ Y L  +  + V   GR  RA ++  A +    S  
Sbjct  400  KFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTNSQR  459

Query  488  ---RELKREL-----------INEALETLMEQAVAAVQKM  513
               R L+R++           I + LE+  E  +A ++ +
Sbjct  460  RTVRSLERDVGCRFDFISPPAIEDVLESSAEHVIATLRGV  499


>sp|Q9C551|RH5_ARATH DEAD-box ATP-dependent RNA helicase 5 OS=Arabidopsis 
thaliana OX=3702 GN=RH5 PE=1 SV=1
Length=537

 Score = 49.7 bits (117),  Expect = 7e-05, Method: Compositional matrix adjust.
 Identities = 45/142 (32%), Positives = 67/142 (47%), Gaps = 18/142 (13%)

Query  358  LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ  417
            L  ++  S   R ++F   +  A  L  +LQQ+ G + V I        GN +QS     
Sbjct  357  LLEKYHKSQKNRVLVFALYKVEAERLERFLQQR-GWKAVSIH-------GNKAQS-----  403

Query  418  RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL-LTNE--ISMVQARGRARA  474
             ++   +  F++G+  LLVAT VA  GLDIP   VV+ Y   LT E  +  +   GRA  
Sbjct  404  -ERTRSLSLFKEGSCPLLVATDVAARGLDIPDVEVVINYTFPLTTEDYVHRIGRTGRAGK  462

Query  475  DQSVYAFVATEGSRELKRELIN  496
                + F  T  ++ L  EL+N
Sbjct  463  KGVAHTFF-TPLNKGLAGELVN  483


>sp|C8V8H4|DED1_EMENI ATP-dependent RNA helicase ded1 OS=Emericella 
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 
194 / M139) OX=227321 GN=ded1 PE=3 SV=1
Length=668

 Score = 50.1 bits (118),  Expect = 7e-05, Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 47/83 (57%), Gaps = 2/83 (2%)

Query  416  TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA  474
            TQR+++  ++ F+ G   +LVAT+VA  GLDIP+   V+ Y L T+    V   GR  RA
Sbjct  481  TQRERERALEMFRSGRYPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRA  540

Query  475  -DQSVYAFVATEGSRELKRELIN  496
             +  +       G+R + R+LI+
Sbjct  541  GNTGIATAFFNRGNRGVVRDLID  563


>sp|Q7L014|DDX46_HUMAN Probable ATP-dependent RNA helicase DDX46 
OS=Homo sapiens OX=9606 GN=DDX46 PE=1 SV=2
Length=1031

 Score = 50.1 bits (118),  Expect = 7e-05, Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 55/108 (51%), Gaps = 6/108 (6%)

Query  378  QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLL  435
            Q + S+++++ +Q+     D   + L+ A     S H  + Q D+  +I  F++GT  LL
Sbjct  617  QESGSVIIFVDKQE---HADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLL  673

Query  436  VATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFV  482
            VATSVA  GLD+ H  +VV Y    +    V   GR  RA    YA+ 
Sbjct  674  VATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYT  721


>sp|Q5R6D8|DDX46_PONAB Probable ATP-dependent RNA helicase DDX46 
OS=Pongo abelii OX=9601 GN=DDX46 PE=2 SV=1
Length=1032

 Score = 50.1 bits (118),  Expect = 7e-05, Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 55/108 (51%), Gaps = 6/108 (6%)

Query  378  QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLL  435
            Q + S+++++ +Q+     D   + L+ A     S H  + Q D+  +I  F++GT  LL
Sbjct  617  QESGSVIIFVDKQE---HADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLL  673

Query  436  VATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFV  482
            VATSVA  GLD+ H  +VV Y    +    V   GR  RA    YA+ 
Sbjct  674  VATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYT  721


>sp|Q569Z5|DDX46_MOUSE Probable ATP-dependent RNA helicase DDX46 
OS=Mus musculus OX=10090 GN=Ddx46 PE=1 SV=2
Length=1032

 Score = 50.1 bits (118),  Expect = 7e-05, Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 55/108 (51%), Gaps = 6/108 (6%)

Query  378  QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLL  435
            Q + S+++++ +Q+     D   + L+ A     S H  + Q D+  +I  F++GT  LL
Sbjct  617  QESGSVIIFVDKQE---HADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLL  673

Query  436  VATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFV  482
            VATSVA  GLD+ H  +VV Y    +    V   GR  RA    YA+ 
Sbjct  674  VATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYT  721


>sp|Q970I2|XPB2_SULTO DNA 3'-5' translocase XPB2 OS=Sulfurisphaera 
tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 
7) OX=273063 GN=xpb2 PE=1 SV=1
Length=439

 Score = 49.7 bits (117),  Expect = 7e-05, Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 75/172 (44%), Gaps = 37/172 (22%)

Query  1    MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKV--VVLVNRVH  58
            +ELR YQ E +   L+ K  II LPTGAGKT+ A       L+ V   KV  +++V  + 
Sbjct  67   IELRDYQAEAVKAWLKEKRGIIVLPTGAGKTQVA-------LKIVSIMKVATLIVVPTID  119

Query  59   LVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEE  118
            L+TQ  E   + L           D  P    G       + + T +    A T  EE  
Sbjct  120  LITQWKERINKYL-----------DFDPGIIGGGEDSLKGITVITYD---SAYTRAEELG  165

Query  119  HVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASP  170
            +     F L++ DE HH   +  Y+ IM+Q            P  LGLTA+P
Sbjct  166  N----KFPLLIFDEVHHLPSEG-YS-IMAQLF--------ASPYRLGLTATP  203


 Score = 48.9 bits (115),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 67/146 (46%), Gaps = 31/146 (21%)

Query  333  DRKNELAHLATHGPEN------PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLW  386
            D++   A LA H   N       K+E L +ILQ       + + I+FTR  Q A+     
Sbjct  288  DKEAREALLAWHESLNIAVNSQSKIEKLREILQ----EYKNEKIIVFTRDTQMAYR----  339

Query  387  LQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ-QEVIQKFQDGTLNLLVATSVAEEGL  445
                       I    LI        T+ T +D+ +E++QKF+DG   ++VA++V +EG+
Sbjct  340  -----------ISKTFLIPV-----VTYKTDKDEREEILQKFRDGEYRVIVASTVFDEGV  383

Query  446  DIPHCNVVVRYGLLTNEISMVQARGR  471
            D+P   + +  G    +   +Q  GR
Sbjct  384  DVPDATLAIVMGGYGTKRQFLQRLGR  409


>sp|Q756G5|DBP8_EREGS ATP-dependent RNA helicase DBP8 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=DBP8 PE=3 SV=1
Length=435

 Score = 49.3 bits (116),  Expect = 7e-05, Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 66/141 (47%), Gaps = 19/141 (13%)

Query  346  PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
            PE+ K   L ++L  +   S S   I+F     SA  L   L Q      ++IR      
Sbjct  239  PEHVKEAYLYQVLSSEEYKSKS--AIVFVNRTISAEILRRMLMQ------LEIRV-----  285

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM  465
               +S  + M QR++   +Q+F+     +L+AT VA  GLDIP   +VV Y +  N  + 
Sbjct  286  ---TSLHSQMPQRERTNSLQRFRANAARVLIATDVASRGLDIPAVQLVVNYDIPANPDTY  342

Query  466  VQARGR-ARADQS--VYAFVA  483
            +   GR ARA +     +F+A
Sbjct  343  IHRAGRTARAGRGGEALSFIA  363


>sp|Q9P6N8|RRP3_SCHPO ATP-dependent rRNA helicase rrp3 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=rrp3 
PE=3 SV=1
Length=465

 Score = 49.7 bits (117),  Expect = 7e-05, Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 83/171 (49%), Gaps = 15/171 (9%)

Query  319  QILCAERRLL---ALFDDRKNELAHLATHGPE----NPKLEMLEKILQRQ--FSSSNSPR  369
            +I+  ERR L   A    +  +L   + H P     + K   ++ ++QR   F   +   
Sbjct  215  KIIPHERRTLLFSATMTSKVEKLQRASLHQPVRVAVSSKFSTVDTLIQRYLFFPFKHKDT  274

Query  370  GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKF  427
             +++     + +S++++ +     Q + I   LL   G S+   H  ++Q ++   + KF
Sbjct  275  YLVYLVNELAGNSIIIFARTVNDTQRLAI---LLRTLGFSAIPLHGQLSQSNRLGALNKF  331

Query  428  QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQS  477
            + G  + LVAT VA  GLDIP  +VV+ Y + T+  + +   GR ARA ++
Sbjct  332  KSGARSTLVATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARAGRA  382


>sp|Q62780|DDX46_RAT Probable ATP-dependent RNA helicase DDX46 
OS=Rattus norvegicus OX=10116 GN=Ddx46 PE=1 SV=1
Length=1032

 Score = 50.1 bits (118),  Expect = 7e-05, Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 55/108 (51%), Gaps = 6/108 (6%)

Query  378  QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLL  435
            Q + S+++++ +Q+     D   + L+ A     S H  + Q D+  +I  F++GT  LL
Sbjct  617  QESGSVIIFVDKQE---HADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLL  673

Query  436  VATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFV  482
            VATSVA  GLD+ H  +VV Y    +    V   GR  RA    YA+ 
Sbjct  674  VATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYT  721


>sp|Q84W89|RH37_ARATH DEAD-box ATP-dependent RNA helicase 37 OS=Arabidopsis 
thaliana OX=3702 GN=RH37 PE=2 SV=2
Length=633

 Score = 49.7 bits (117),  Expect = 8e-05, Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 66/140 (47%), Gaps = 21/140 (15%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            ++F  T++ A SL  WL               + G   +S     TQ++++  ++ F+ G
Sbjct  422  LVFVETKRGADSLENWL--------------CINGFPATSIHGDRTQQEREVALKAFKSG  467

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQS--VYAFVATEGS  487
               +LVAT VA  GLDIPH   VV + L  +    V   GR  RA +S    AF   +G+
Sbjct  468  RTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFF-NDGN  526

Query  488  RELKR---ELINEALETLME  504
              L R   EL+ EA + + E
Sbjct  527  TSLARPLAELMQEANQEVPE  546


>sp|A8GMJ1|UVRB_RICAH UvrABC system protein B OS=Rickettsia akari 
(strain Hartford) OX=293614 GN=uvrB PE=3 SV=1
Length=661

 Score = 49.7 bits (117),  Expect = 9e-05, Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 36/56 (64%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E++Q  + GT+++LV  ++  EGLDIP C +V      + G L +E+S++Q  GRA
Sbjct  486  EILQDLRQGTIDILVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGRA  541


>sp|Q6FM43|PRP28_CANGA Pre-mRNA-splicing ATP-dependent RNA helicase 
PRP28 OS=Candida glabrata (strain ATCC 2001 / BCRC 20586 
/ JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=PRP28 
PE=3 SV=1
Length=582

 Score = 49.3 bits (116),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 48/168 (29%), Positives = 77/168 (46%), Gaps = 24/168 (14%)

Query  331  FDDRKNELAHLATH-GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQ  389
            +D  K  +  +  H G ++ KL  L+  L +     N    IIF   +++A  L L L  
Sbjct  400  WDSDKPLITQVVRHTGDDDKKLSFLKDDLIK-----NGLPAIIFINYKETADWLTLRLSD  454

Query  390  QQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPH  449
            +  + T+          G+ SQS    QR  +  IQK + GT N+L+AT+VA  GLDIP 
Sbjct  455  RFNIVTL---------HGSKSQS----QR--ESAIQKLKSGTANVLIATNVAARGLDIPD  499

Query  450  CNVVVRYGL---LTNEISMVQARGRARADQSVYAFVATEGSRELKREL  494
              +VV + +     + I  +   GRA        ++  E   +L ++L
Sbjct  500  VALVVNFQMSKKFDDYIHRIGRTGRAGKTGIAVTYLTGEEDPQLIKQL  547


>sp|Q8DDN6|RHLB_VIBVU ATP-dependent RNA helicase RhlB OS=Vibrio 
vulnificus (strain CMCP6) OX=216895 GN=rhlB PE=3 SV=1
Length=435

 Score = 48.9 bits (115),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 80/326 (25%), Positives = 130/326 (40%), Gaps = 70/326 (21%)

Query  253  FGTQMYEQQVVKL--------SEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALA  304
            +G + Y++Q+ KL             +    +QRV+ L+  +   A+++ +  R  D L 
Sbjct  119  YGGESYDKQLTKLQGGVDVLIGTTGRIIDFYKQRVFNLNNIQ---AVVLDEADRMFD-LG  174

Query  305  ALQD--FYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPEN----PKLEML  354
             ++D  F  R      ++   + RL  LF      R  ELA    H PE+    P+ +  
Sbjct  175  FIKDIRFLFR------RMPAPQERLNMLFSATLSYRVQELAFEHMHNPEHVVVEPEQKTG  228

Query  355  EKILQRQFSSSNSP---------------RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIR  399
             +I +  F  SN                 R IIF  T+    S+  W      L     R
Sbjct  229  HRIQEELFYPSNEDKMALLQTLIEEEWPDRAIIFANTKYKCESI--WAH----LAADGHR  282

Query  400  AQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL-  458
              LL G         + Q+ +++++++F  G+++LLVAT VA  GL IP    V  Y L 
Sbjct  283  VGLLTG--------DVPQKKREKILEQFTQGSVDLLVATDVAARGLHIPQVTHVFNYDLP  334

Query  459  --LTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQA  516
                + +  +   GRA A     +F   + +  L       A+E  +E  +  V   D +
Sbjct  335  DDCEDYVHRIGRTGRAGASGHSISFACEDYAINLP------AIEEYIEHTI-PVSDYDSS  387

Query  517  EYQAKIRDLQQAALTKRAAQAAQREN  542
               A I+DL     T  A    +R N
Sbjct  388  ---ALIQDLPAPVRTPSARNQQRRTN  410


>sp|P44586|DEAD_HAEIN ATP-dependent RNA helicase DeaD OS=Haemophilus 
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) 
OX=71421 GN=deaD PE=3 SV=1
Length=613

 Score = 49.3 bits (116),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 41/142 (29%), Positives = 74/142 (52%), Gaps = 19/142 (13%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            IIF RT+     +   L++               G  +++ +  MTQ+ +++ + + ++G
Sbjct  248  IIFARTKTGTLDITELLEKN--------------GFRSAALNGDMTQQLREQTLDRLRNG  293

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRE  489
            +L+++VAT VA  G+DI   ++VV Y +  +  S V   GR  RA +S  A +  E  RE
Sbjct  294  SLDIVVATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVE-PRE  352

Query  490  LKRELINEALETLMEQAVAAVQ  511
             +R L N  +E LM++ +  V+
Sbjct  353  -RRLLRN--IEHLMKKGINEVE  371


>sp|Q7MGP7|RHLB_VIBVY ATP-dependent RNA helicase RhlB OS=Vibrio 
vulnificus (strain YJ016) OX=196600 GN=rhlB PE=3 SV=1
Length=435

 Score = 48.9 bits (115),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 80/326 (25%), Positives = 130/326 (40%), Gaps = 70/326 (21%)

Query  253  FGTQMYEQQVVKL--------SEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALA  304
            +G + Y++Q+ KL             +    +QRV+ L+  +   A+++ +  R  D L 
Sbjct  119  YGGESYDKQLAKLQGGVDVLIGTTGRIIDFYKQRVFNLNNIQ---AVVLDEADRMFD-LG  174

Query  305  ALQD--FYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPEN----PKLEML  354
             ++D  F  R      ++   + RL  LF      R  ELA    H PE+    P+ +  
Sbjct  175  FIKDIRFLFR------RMPAPQERLNMLFSATLSYRVQELAFEHMHNPEHVVVEPEQKTG  228

Query  355  EKILQRQFSSSNSP---------------RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIR  399
             +I +  F  SN                 R IIF  T+    S+  W      L     R
Sbjct  229  HRIQEELFYPSNEDKMALLQTLIEEEWPDRAIIFANTKYKCESI--WAH----LAADGHR  282

Query  400  AQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL-  458
              LL G         + Q+ +++++++F  G+++LLVAT VA  GL IP    V  Y L 
Sbjct  283  VGLLTG--------DVPQKKREKILEQFTQGSVDLLVATDVAARGLHIPQVTHVFNYDLP  334

Query  459  --LTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQA  516
                + +  +   GRA A     +F   + +  L       A+E  +E  +  V   D +
Sbjct  335  DDCEDYVHRIGRTGRAGASGHSISFACEDYAINLP------AIEEYIEHTI-PVSDYDSS  387

Query  517  EYQAKIRDLQQAALTKRAAQAAQREN  542
               A I+DL     T  A    +R N
Sbjct  388  ---ALIQDLPAPVRTPSARNQQRRTN  410


>sp|Q8L7S8|RH3_ARATH DEAD-box ATP-dependent RNA helicase 3, chloroplastic 
OS=Arabidopsis thaliana OX=3702 GN=RH3 PE=1 SV=2
Length=748

 Score = 49.3 bits (116),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 72/160 (45%), Gaps = 32/160 (20%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            + I+FT+T++ A  + L L          I  + L G         ++Q  ++  +  F+
Sbjct  353  KTIVFTQTKRDADEVSLALSNS-------IATEALHG--------DISQHQRERTLNAFR  397

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGS  487
             G   +LVAT VA  GLDIP+ ++V+ Y L  +  + V   GR  RA +   A +    S
Sbjct  398  QGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSS  457

Query  488  -----RELKREL-----------INEALETLMEQAVAAVQ  511
                 R L+R++           + + LE+  +Q VA + 
Sbjct  458  QKRTVRSLERDVGCHFEFISPPTVGDLLESSADQVVATLN  497


>sp|Q75HJ0|RH37_ORYSJ DEAD-box ATP-dependent RNA helicase 37 OS=Oryza 
sativa subsp. japonica OX=39947 GN=PL10A PE=2 SV=1
Length=637

 Score = 48.9 bits (115),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 60/134 (45%), Gaps = 21/134 (16%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            ++F  T++ A +L  WL    G     I                 TQ++++  ++ F+ G
Sbjct  437  LVFVETKRGADALENWLYTN-GFPATSIHGD-------------RTQQEREYALRSFKSG  482

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGRARADQSVYAFVATEGS  487
               +LVAT VA  GLDIPH   V+ + L   + + +  +   GRA       AF   EG+
Sbjct  483  ATPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSGLATAFF-NEGN  541

Query  488  RELKR---ELINEA  498
              L R   EL+ EA
Sbjct  542  LSLARPLCELMQEA  555


>sp|Q65RG7|RHLB_MANSM ATP-dependent RNA helicase RhlB OS=Mannheimia 
succiniciproducens (strain KCTC 0769BP / MBEL55E) OX=221988 
GN=rhlB PE=3 SV=1
Length=417

 Score = 48.5 bits (114),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 53/204 (26%), Positives = 86/204 (42%), Gaps = 31/204 (15%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L  +L+ ++      R IIF  T+     +  +L           R  LL G    
Sbjct  239  KMPLLITLLEEEWPE----RCIIFANTKHQCEKIWGYLAADGH------RVGLLTG----  284

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q+ +  ++++F DG L++LVAT VA  GL IP    V  Y L  +    V   
Sbjct  285  ----DVAQKKRLSLLKQFTDGALDILVATDVAARGLHIPDVTHVFNYDLPDDREDYVHRI  340

Query  470  GR-ARADQS--VYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQ  526
            GR  RA +S    +F   E +  L       A+E  +   +A    + Q +  + IRDL 
Sbjct  341  GRTGRAGESGVSISFACEEYAMNLP------AIEEYIGHHIA----VSQYDSDSLIRDLA  390

Query  527  QAALTKRAAQAAQRENQRQQFPVE  550
            +    K +  A+ R N+    P +
Sbjct  391  KPYRLKPSLPASNRHNRNGAKPFK  414


>sp|A1CR32|RRP3_ASPCL ATP-dependent rRNA helicase rrp3 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / 
NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=rrp3 PE=3 SV=1
Length=473

 Score = 48.5 bits (114),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 55/111 (50%), Gaps = 15/111 (14%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            IIFTRT      +   L+   G   + +  QL       SQS+ +        + KF+  
Sbjct  297  IIFTRTVHETQRISFLLRAL-GFGAIPLHGQL-------SQSSRLG------ALGKFRSR  342

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYA  480
            + ++LVAT VA  GLDIP  +VV+ + L T+  + V   GR ARA +S  A
Sbjct  343  SRDILVATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVA  393


>sp|Q4PHU9|DBP2_USTMA ATP-dependent RNA helicase DBP2 OS=Ustilago 
maydis (strain 521 / FGSC 9021) OX=237631 GN=DBP2 PE=3 SV=2
Length=552

 Score = 48.5 bits (114),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 44/170 (26%), Positives = 71/170 (42%), Gaps = 41/170 (24%)

Query  331  FDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQ  390
            F+ +   + HL T   EN K+                   IIFT T++ A  L  +L+Q 
Sbjct  359  FEKKGKLIGHLETISAENGKV-------------------IIFTSTKRVADDLTKFLRQD  399

Query  391  QGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE--VIQKFQDGTLNLLVATSVAEEGLDIP  448
                            G  + + H  ++ Q+   V+ +F+ G   ++VAT+VA  GLD+ 
Sbjct  400  ----------------GWPALAIHGDKQQQERDWVLAEFKSGRSPIMVATAVASRGLDVK  443

Query  449  HCNVVVRYGLLTNE---ISMVQARGRARADQSVYAFVATEGSRELKRELI  495
              + V+ Y   TN    +  +   GRA    + Y +   E S+   RELI
Sbjct  444  DISYVINYDFPTNTEDYVHQIGRTGRAGRTGTAYTYFTPENSKS-ARELI  492


>sp|P06634|DED1_YEAST ATP-dependent RNA helicase DED1 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DED1 
PE=1 SV=2
Length=604

 Score = 48.5 bits (114),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 42/133 (32%), Positives = 63/133 (47%), Gaps = 19/133 (14%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            +IF  T++ A  L  +L  Q      + RA  + G          TQ +++  +  F+ G
Sbjct  403  LIFVETKRMADQLTDFLIMQ------NFRATAIHG--------DRTQSERERALAAFRSG  448

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQS--VYAFVATEGS  487
               LLVAT+VA  GLDIP+   V+ Y L ++    V   GR  RA  +    AF  +E S
Sbjct  449  AATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNSENS  508

Query  488  RELK--RELINEA  498
              +K   E++ EA
Sbjct  509  NIVKGLHEILTEA  521


>sp|A6ZP47|DED1_YEAS7 ATP-dependent RNA helicase DED1 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=DED1 PE=3 SV=1
Length=604

 Score = 48.5 bits (114),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 42/133 (32%), Positives = 63/133 (47%), Gaps = 19/133 (14%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            +IF  T++ A  L  +L  Q      + RA  + G          TQ +++  +  F+ G
Sbjct  403  LIFVETKRMADQLTDFLIMQ------NFRATAIHG--------DRTQSERERALAAFRSG  448

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQS--VYAFVATEGS  487
               LLVAT+VA  GLDIP+   V+ Y L ++    V   GR  RA  +    AF  +E S
Sbjct  449  AATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNSENS  508

Query  488  RELK--RELINEA  498
              +K   E++ EA
Sbjct  509  NIVKGLHEILTEA  521


>sp|Q6FNK8|RRP3_CANGA ATP-dependent rRNA helicase RRP3 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=RRP3 PE=3 SV=1
Length=493

 Score = 48.5 bits (114),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 38/109 (35%), Positives = 54/109 (50%), Gaps = 17/109 (16%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGL-QTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD  429
            IIFTRT+ +A  L        GL   ++  A  L G  N +Q T          +  F+ 
Sbjct  317  IIFTRTKANAERL-------SGLCNLLEFSATALHGDLNQNQRTG--------ALDLFKA  361

Query  430  GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQS  477
            G  ++LVAT VA  GLDIP  ++V+ Y +  +  S +   GR ARA +S
Sbjct  362  GKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRS  410


>sp|A1D405|RRP3_NEOFI ATP-dependent rRNA helicase rrp3 OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / 
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=rrp3 
PE=3 SV=1
Length=472

 Score = 48.1 bits (113),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 54/111 (49%), Gaps = 15/111 (14%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            IIFTRT      +   L+   G   + +  QL       SQS  +        + KF+  
Sbjct  296  IIFTRTVHETQRISFLLRSL-GFGAIPLHGQL-------SQSARLG------ALGKFRSR  341

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYA  480
            + ++LVAT VA  GLDIP  +VV+ + L T+  + V   GR ARA +S  A
Sbjct  342  SRDILVATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVA  392


>sp|Q4WJE9|RRP3_ASPFU ATP-dependent rRNA helicase rrp3 OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC 
A1100 / Af293) OX=330879 GN=rrp3 PE=3 SV=1
Length=472

 Score = 48.1 bits (113),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 54/111 (49%), Gaps = 15/111 (14%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            IIFTRT      +   L+   G   + +  QL       SQS  +        + KF+  
Sbjct  296  IIFTRTVHETQRISFLLRSL-GFGAIPLHGQL-------SQSARLG------ALGKFRSR  341

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYA  480
            + ++LVAT VA  GLDIP  +VV+ + L T+  + V   GR ARA +S  A
Sbjct  342  SRDILVATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVA  392


>sp|Q4WP13|DED1_ASPFU ATP-dependent RNA helicase ded1 OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 
/ Af293) OX=330879 GN=ded1 PE=3 SV=1
Length=674

 Score = 48.1 bits (113),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 2/83 (2%)

Query  416  TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA  474
            TQR+++  ++ F+ G   +LVAT+VA  GLDIP+   V+ Y L T+    V   GR  RA
Sbjct  485  TQRERERALEMFRSGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRA  544

Query  475  -DQSVYAFVATEGSRELKRELIN  496
             +  +        +R + RELI+
Sbjct  545  GNTGIATAFFNRSNRGVVRELID  567


>sp|A5DQS0|DED1_PICGU ATP-dependent RNA helicase DED1 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DED1 PE=3 
SV=3
Length=637

 Score = 48.1 bits (113),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 40/134 (30%), Positives = 61/134 (46%), Gaps = 16/134 (12%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            IIFT T++ A +L  +L  Q G     I                 +Q ++++ +  F+ G
Sbjct  430  IIFTETKRMADNLADFLYDQ-GFPATAIHGD-------------RSQYEREKALAAFKSG  475

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFVATEGSREL  490
            T  +LVAT+VA  GLDIP+ + VV Y L  +    V   GR     +V   +AT      
Sbjct  476  TAPILVATAVAARGLDIPNVSHVVNYDLPGDIDDYVHRIGRTGRAGNVG--IATAFFNRN  533

Query  491  KRELINEALETLME  504
             R ++   +E L E
Sbjct  534  NRNVVKGMIELLSE  547


>sp|Q4UKL6|UVRB_RICFE UvrABC system protein B OS=Rickettsia felis 
(strain ATCC VR-1525 / URRWXCal2) OX=315456 GN=uvrB PE=3 
SV=1
Length=661

 Score = 48.1 bits (113),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 29/109 (27%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            R ++ T T++ A  L  +LQ+              +    S   +++   ++ E+++  +
Sbjct  447  RVLVTTLTKKMAEDLTAYLQE--------------LKYKTSYLHSNIHTLERIEILRDLR  492

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
             GT+++LV  ++  EGLDIP C +V      + G L +E+S++Q  GRA
Sbjct  493  QGTIDILVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGRA  541


>sp|Q9VHP0|DDX3_DROME ATP-dependent RNA helicase bel OS=Drosophila 
melanogaster OX=7227 GN=bel PE=1 SV=1
Length=798

 Score = 48.1 bits (113),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 41/134 (31%), Positives = 64/134 (48%), Gaps = 16/134 (12%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            +IF  T++ A SL  +L Q     T              S     TQ++++E ++ F+ G
Sbjct  563  LIFVETKKGADSLEEFLYQCNHPVT--------------SIHGDRTQKEREEALRCFRSG  608

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFVATEGSREL  490
               +LVAT+VA  GLDIPH   V+ + L ++    V   GR     ++   VAT    E 
Sbjct  609  DCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNL--GVATSFFNEK  666

Query  491  KRELINEALETLME  504
             R + ++ LE L+E
Sbjct  667  NRNICSDLLELLIE  680


>sp|A1CH78|DED1_ASPCL ATP-dependent RNA helicase ded1 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=ded1 PE=3 SV=1
Length=681

 Score = 48.1 bits (113),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 2/83 (2%)

Query  416  TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA  474
            TQR+++  ++ F+     +LVAT+VA  GLDIP+   V+ Y L T+    V   GR  RA
Sbjct  486  TQRERERALEMFRSARCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRA  545

Query  475  -DQSVYAFVATEGSRELKRELIN  496
             +  +       G+R + RELI+
Sbjct  546  GNTGIATAFFNRGNRGVVRELID  568


>sp|A3LP87|DBP8_PICST ATP-dependent RNA helicase DBP8 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=DBP8 PE=3 SV=2
Length=445

 Score = 47.8 bits (112),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 53/102 (52%), Gaps = 7/102 (7%)

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
            +S  + M Q ++   +Q+F+ G   +L+AT VA  GLDIP   +VV + +  +    +  
Sbjct  281  ASLHSEMPQSERTNSVQRFKAGAARILIATDVASRGLDIPSVELVVNFDIPADPDDFIHR  340

Query  469  RGR-ARADQSVYAFVATEGSRELKR-----ELINEALETLME  504
             GR ARA +S  A V     +++ R     E IN+ +E L E
Sbjct  341  VGRTARAGRSGDA-VTIIAEKDIDRIASIEERINKKMELLEE  381


>sp|O25029|RHPA_HELPY DEAD-box ATP-dependent RNA helicase RhpA 
OS=Helicobacter pylori (strain ATCC 700392 / 26695) OX=85962 
GN=rhpA PE=1 SV=1
Length=492

 Score = 47.8 bits (112),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 34/104 (33%), Positives = 49/104 (47%), Gaps = 14/104 (13%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            + I+FTRT++ A  L       Q L + + ++  L G         M QRD++  I  F+
Sbjct  259  KSIVFTRTKKEADEL------HQFLASKNYKSTALHG--------DMDQRDRRSSIMAFK  304

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA  472
                ++LVAT VA  GLDI   + V  Y L  N  S +   GR 
Sbjct  305  KNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRT  348


>sp|Q7Y183|RH10_ORYSJ DEAD-box ATP-dependent RNA helicase 10 OS=Oryza 
sativa subsp. japonica OX=39947 GN=RH10 PE=2 SV=1
Length=472

 Score = 47.8 bits (112),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 80/179 (45%), Gaps = 23/179 (13%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            +IF RT +S   L L L+        ++R + +      S S  M+Q  +   + +F+  
Sbjct  286  MIFVRTCESTRLLALTLR--------NLRFKAI------SISGQMSQDKRLGALNRFKTK  331

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRE  489
              N+L+ T VA  GLDI   +VV+ Y +  N    V   GR ARA  + YA         
Sbjct  332  DCNILICTDVASRGLDIQGVDVVINYDIPMNSKDYVHRVGRTARAGNTGYAVSLVNQYEA  391

Query  490  LKRELINEALETLMEQAVAAVQKMDQAEY---QAKIRDLQQAALTKRAAQAAQRENQRQ  545
            +  ++I + L   +       +K+D AE    + +I D ++ ALT        ++ +R+
Sbjct  392  MWFKMIEKLLGYEIPD-----RKVDNAEIMILRERISDSKRIALTTMKEGGGHKKKRRK  445


>sp|A2XKG2|RH10_ORYSI DEAD-box ATP-dependent RNA helicase 10 OS=Oryza 
sativa subsp. indica OX=39946 GN=RH10 PE=1 SV=1
Length=472

 Score = 47.8 bits (112),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 80/179 (45%), Gaps = 23/179 (13%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            +IF RT +S   L L L+        ++R + +      S S  M+Q  +   + +F+  
Sbjct  286  MIFVRTCESTRLLALTLR--------NLRFKAI------SISGQMSQDKRLGALNRFKTK  331

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRE  489
              N+L+ T VA  GLDI   +VV+ Y +  N    V   GR ARA  + YA         
Sbjct  332  DCNILICTDVASRGLDIQGVDVVINYDIPMNSKDYVHRVGRTARAGNTGYAVSLVNQYEA  391

Query  490  LKRELINEALETLMEQAVAAVQKMDQAEY---QAKIRDLQQAALTKRAAQAAQRENQRQ  545
            +  ++I + L   +       +K+D AE    + +I D ++ ALT        ++ +R+
Sbjct  392  MWFKMIEKLLGYEIPD-----RKVDNAEIMILRERISDSKRIALTTMKEGGGHKKKRRK  445


>sp|Q1RHI9|UVRB_RICBR UvrABC system protein B OS=Rickettsia bellii 
(strain RML369-C) OX=336407 GN=uvrB PE=3 SV=1
Length=661

 Score = 47.8 bits (112),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 21/56 (38%), Positives = 36/56 (64%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+++  + GT+++LV  ++  EGLDIP C +V      + G L +E+S++Q  GRA
Sbjct  486  EILRDLRQGTIDILVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGRA  541


>sp|A8GV86|UVRB_RICB8 UvrABC system protein B OS=Rickettsia bellii 
(strain OSU 85-389) OX=391896 GN=uvrB PE=3 SV=1
Length=661

 Score = 47.8 bits (112),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 21/56 (38%), Positives = 36/56 (64%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+++  + GT+++LV  ++  EGLDIP C +V      + G L +E+S++Q  GRA
Sbjct  486  EILRDLRQGTIDILVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGRA  541


>sp|Q6YS30|RH5_ORYSJ DEAD-box ATP-dependent RNA helicase 5 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os07g0301200 PE=2 SV=1
Length=512

 Score = 47.8 bits (112),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 33/95 (35%), Positives = 49/95 (52%), Gaps = 6/95 (6%)

Query  407  GNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL-LTNE-  462
            G S+ S H    Q D+ + +  F++G+  L++AT VA  GLDIP   VV+ Y   LT E 
Sbjct  366  GWSAVSVHGDKAQHDRTKALSLFKEGSCPLMIATDVASRGLDIPDVEVVINYSYPLTTED  425

Query  463  -ISMVQARGRARADQSVYAFVATEGSRELKRELIN  496
             +  +   GRA      + F   E ++ L  EL+N
Sbjct  426  YVHRIGRTGRAGKKGVAHTFFTQE-NKGLAGELVN  459


>sp|Q0UN57|PRP5_PHANO Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 
/ FGSC 10173) OX=321614 GN=PRP5 PE=3 SV=2
Length=1184

 Score = 48.1 bits (113),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 50/99 (51%), Gaps = 13/99 (13%)

Query  358  LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ  417
            L + FS   + + +IFT  +++A  LL  L + +      I      GA +        Q
Sbjct  788  LGQTFSDDENAQVLIFTERQETAEDLLSKLFKAKYFAVNTIH-----GAKD--------Q  834

Query  418  RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY  456
             D+ E I +F+ G LN+L+ATSVA  GLD+P   +V  +
Sbjct  835  TDRNEAINEFKQGLLNILIATSVAARGLDVPGLALVYNF  873


>sp|P44701|SRMB_HAEIN ATP-dependent RNA helicase SrmB OS=Haemophilus 
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) 
OX=71421 GN=srmB PE=3 SV=1
Length=439

 Score = 47.4 bits (111),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 17/130 (13%)

Query  356  KILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHM  415
            K+L R   +    RGI+F R R+ A  L       + L+   IR+  L G         M
Sbjct  237  KLLARFIETEEVTRGIVFIRRREDAREL------SETLRKRGIRSAYLEG--------EM  282

Query  416  TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA  474
             Q  +   I K + G + +LVAT VA  G+DI   + V+ + L  +  + +   GR ARA
Sbjct  283  AQTQRNNAIDKLKSGIVTVLVATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARA  342

Query  475  DQ--SVYAFV  482
             +  +  +FV
Sbjct  343  GKKGTAVSFV  352


>sp|P57453|DEAD_BUCAI ATP-dependent RNA helicase DeaD OS=Buchnera 
aphidicola subsp. Acyrthosiphon pisum (strain APS) OX=107806 
GN=deaD PE=3 SV=1
Length=601

 Score = 47.8 bits (112),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 73/142 (51%), Gaps = 19/142 (13%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            IIF RT+ +   +   L++               G  +++ +  M Q  +++ +++ ++G
Sbjct  248  IIFVRTKNATLEVSEALERN--------------GYNSAALNGDMNQALREQTLERLKNG  293

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRE  489
             L++L+AT VA  GLD+   + V+ Y +  +  S V   GR  RA ++  A +  E +RE
Sbjct  294  RLDILIATDVAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRAGRALLFVE-NRE  352

Query  490  LKRELINEALETLMEQAVAAVQ  511
             +R L N  +E  M+Q++  VQ
Sbjct  353  -RRLLRN--IERTMKQSIPEVQ  371


>sp|B9XXL6|RHPA_HELP8 DEAD-box ATP-dependent RNA helicase RhpA 
OS=Helicobacter pylori (strain B128) OX=544406 GN=rhpA PE=1 
SV=1
Length=492

 Score = 47.4 bits (111),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 14/115 (12%)

Query  358  LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ  417
            + R   +    + I+FTRT++ A  L       Q L + + ++  L G         M Q
Sbjct  248  IMRLLDTQAPKKSIVFTRTKKEADEL------HQFLASKNYKSTALHG--------DMDQ  293

Query  418  RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA  472
            RD++  I  F+    ++LVAT VA  GLDI   + V  Y L  N  S +   GR 
Sbjct  294  RDRRASIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRT  348


>sp|C4K0Z4|UVRB_RICPU UvrABC system protein B OS=Rickettsia peacockii 
(strain Rustic) OX=562019 GN=uvrB PE=3 SV=1
Length=661

 Score = 47.8 bits (112),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 21/56 (38%), Positives = 36/56 (64%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+++  + GT+++LV  ++  EGLDIP C +V      + G L +E+S++Q  GRA
Sbjct  486  EILRDLRQGTIDVLVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGRA  541


>sp|C3PMP5|UVRB_RICAE UvrABC system protein B OS=Rickettsia africae 
(strain ESF-5) OX=347255 GN=uvrB PE=3 SV=1
Length=661

 Score = 47.8 bits (112),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 21/56 (38%), Positives = 36/56 (64%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+++  + GT+++LV  ++  EGLDIP C +V      + G L +E+S++Q  GRA
Sbjct  486  EILRDLRQGTIDVLVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGRA  541


>sp|A8GR53|UVRB_RICRS UvrABC system protein B OS=Rickettsia rickettsii 
(strain Sheila Smith) OX=392021 GN=uvrB PE=3 SV=1
Length=661

 Score = 47.4 bits (111),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 21/56 (38%), Positives = 36/56 (64%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+++  + GT+++LV  ++  EGLDIP C +V      + G L +E+S++Q  GRA
Sbjct  486  EILRDLRQGTIDVLVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGRA  541


>sp|B0BWK0|UVRB_RICRO UvrABC system protein B OS=Rickettsia rickettsii 
(strain Iowa) OX=452659 GN=uvrB PE=3 SV=1
Length=661

 Score = 47.4 bits (111),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 21/56 (38%), Positives = 36/56 (64%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+++  + GT+++LV  ++  EGLDIP C +V      + G L +E+S++Q  GRA
Sbjct  486  EILRDLRQGTIDVLVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGRA  541


>sp|Q92J03|UVRB_RICCN UvrABC system protein B OS=Rickettsia conorii 
(strain ATCC VR-613 / Malish 7) OX=272944 GN=uvrB PE=3 
SV=1
Length=661

 Score = 47.4 bits (111),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 54/109 (50%), Gaps = 19/109 (17%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            R ++ T T++ A  L  +LQ+            L         + H  +R   E+++  +
Sbjct  447  RVLVTTLTKKMAEDLTAYLQE------------LKYKTSYLHSNVHTLER--IEILRDLR  492

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
             GT+++LV  ++  EGLDIP C +V      + G L +E+S++Q  GRA
Sbjct  493  QGTIDVLVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGRA  541


>sp|A6ZSX1|RRP3_YEAS7 ATP-dependent rRNA helicase RRP3 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=RRP3 PE=3 
SV=1
Length=501

 Score = 47.4 bits (111),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 38/109 (35%), Positives = 54/109 (50%), Gaps = 17/109 (16%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGL-QTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD  429
            IIFTRT+ +A  L        GL   ++  A  L G  N +Q        +   +  F+ 
Sbjct  325  IIFTRTKANAERL-------SGLCNLLEFSATALHGDLNQNQ--------RMGALDLFKA  369

Query  430  GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQS  477
            G  ++LVAT VA  GLDIP  ++VV Y +  +  S +   GR ARA +S
Sbjct  370  GKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRS  418


>sp|Q6BU54|DED1_DEBHA ATP-dependent RNA helicase DED1 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / 
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DED1 PE=3 SV=1
Length=630

 Score = 47.4 bits (111),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 14/120 (12%)

Query  352  EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ  411
            E  + +L    S++++   IIFT T++ A +L  +L  Q G     I             
Sbjct  398  EEKKSVLLDLLSANDNGLTIIFTETKRMADNLADFLYDQ-GFPATAIHGD----------  446

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
                +Q ++++ +  F+ GT  +LVAT+VA  GLDIP+ + +V Y L ++    V   GR
Sbjct  447  ---RSQYEREKALAAFKTGTAPILVATAVAARGLDIPNVSHIVNYDLPSDIDDYVHRIGR  503


>sp|Q1DHB2|PRP5_COCIM Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Coccidioides immitis (strain RS) OX=246410 GN=PRP5 
PE=3 SV=1
Length=1197

 Score = 47.8 bits (112),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 56/210 (27%), Positives = 89/210 (42%), Gaps = 32/210 (15%)

Query  312  REHVTK-TQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNS--P  368
            R+ +TK  +I+   R ++A       E+  +    PEN K   L ++L   +S  N+   
Sbjct  759  RKTLTKPVEIIVGGRSVVA------QEITQIVEVRPENTKFVRLLELLGNLYSDDNNEDA  812

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQK  426
            R +IF   +++A  LL  L ++                G    S H    Q D+   I  
Sbjct  813  RALIFVDRQEAADGLLRDLMRK----------------GYPCMSIHGGKDQVDRDSTIDD  856

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGRARADQSVYAFVA  483
            F+ G   +L+ATSVA  GLD+    +V+ Y     L + +      GRA    +   F+ 
Sbjct  857  FKAGIFPVLIATSVAARGLDVKQLKLVINYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLT  916

Query  484  TEGSRELKRELINEALETLMEQAVAAVQKM  513
             E  +E     I +AL+   +    AVQKM
Sbjct  917  EE--QERYSVDIAKALKQSGQSVPEAVQKM  944


>sp|Q4L3G0|MFD_STAHJ Transcription-repair-coupling factor OS=Staphylococcus 
haemolyticus (strain JCSC1435) OX=279808 GN=mfd 
PE=3 SV=1
Length=1169

 Score = 47.4 bits (111),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 25/74 (34%), Positives = 43/74 (58%), Gaps = 10/74 (14%)

Query  414  HMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQA  468
             MT+RD +E +  F +G  ++LV T++ E G+D+P+ N ++     R+GL      + Q 
Sbjct  863  QMTERDLEETMLSFINGEFDILVTTTIIETGVDVPNANTLIIEEADRFGL----SQLYQL  918

Query  469  RGR-ARADQSVYAF  481
            RGR  R+ +  YA+
Sbjct  919  RGRVGRSSRIGYAY  932


>sp|Q4P733|DED1_USTMA ATP-dependent RNA helicase DED1 OS=Ustilago 
maydis (strain 521 / FGSC 9021) OX=237631 GN=DED1 PE=3 SV=1
Length=672

 Score = 47.4 bits (111),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 33/104 (32%), Positives = 55/104 (53%), Gaps = 4/104 (4%)

Query  396  VDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV  453
             D+ +  L+ +   + S H   TQR+++  ++ F+ G   ++VAT+VA  GLDIP+   V
Sbjct  463  ADMLSDFLLRSKIGATSIHGDRTQRERERALELFRSGKTPIMVATAVAARGLDIPNVTHV  522

Query  454  VRYGLLTNEISMVQARGR-ARADQSVYAFV-ATEGSRELKRELI  495
            V Y L ++    V   GR  RA    +A      G++ + R+LI
Sbjct  523  VNYDLPSDVDDYVHRIGRTGRAGNVGHATAFFNRGNKNIVRDLI  566


>sp|Q6Z4K6|RH52B_ORYSJ DEAD-box ATP-dependent RNA helicase 52B 
OS=Oryza sativa subsp. japonica OX=39947 GN=PL10B PE=2 SV=1
Length=638

 Score = 47.4 bits (111),  Expect = 5e-04, Method: Compositional matrix adjust.
 Identities = 39/136 (29%), Positives = 61/136 (45%), Gaps = 25/136 (18%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQ  428
            ++F  T++ A +L  WL                   G  + S H   TQ++++  ++ F+
Sbjct  432  LVFVETKRGADALENWLYNN----------------GFPATSIHGDRTQQEREYALRSFK  475

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGRARADQSVYAFVATE  485
             G   +LVAT VA  GLDIPH   V+ + L   + + +  +   GRA       AF   E
Sbjct  476  SGATPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSGLATAFF-NE  534

Query  486  GSRELKR---ELINEA  498
             +  L R   EL+ EA
Sbjct  535  SNTPLARPLSELMQEA  550


>sp|Q87KH5|RHLB_VIBPA ATP-dependent RNA helicase RhlB OS=Vibrio 
parahaemolyticus serotype O3:K6 (strain RIMD 2210633) OX=223926 
GN=rhlB PE=3 SV=1
Length=437

 Score = 47.0 bits (110),  Expect = 5e-04, Method: Compositional matrix adjust.
 Identities = 80/323 (25%), Positives = 131/323 (41%), Gaps = 69/323 (21%)

Query  253  FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR-YN----DALLIHDTVRAVDALAALQ  307
            +G + Y++Q+ KL +   +      R+   + +R +N     A+++ +  R  D L  ++
Sbjct  119  YGGESYDKQLAKLQDGVDILIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFD-LGFIK  177

Query  308  D--FYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPENPKLEMLEK----I  357
            D  F  R      ++   + RL  LF      R  ELA    H PE+  +E  +K    I
Sbjct  178  DIRFLFR------RMPEPKERLNMLFSATLSYRVQELAFEHMHNPEHVVVEPAQKTGHRI  231

Query  358  LQRQFSSSNSP---------------RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL  402
             +  F  SN                 R I+F  T+    S+  W      L     R  L
Sbjct  232  QEELFYPSNEDKMALLQTLIEEEWPDRAIVFANTKHKCESV--WGH----LAADGHRVGL  285

Query  403  LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---L  459
            L G         + Q+ +++++++F  G +++LVAT VA  GL IP    V  Y L    
Sbjct  286  LTG--------DVPQKKREKILEQFTKGDVDILVATDVAARGLHIPQVTHVFNYDLPDDC  337

Query  460  TNEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQ  519
             + +  +   GRA A     +F   E +  L       A+E  +E  +        +EY 
Sbjct  338  EDYVHRIGRTGRAGASGHSISFACEEYAINLP------AIEEYIEHTIPV------SEYD  385

Query  520  AK--IRDLQQAALTKRAAQAAQR  540
            A   I+DL  A +  RA +  QR
Sbjct  386  ASALIQDL-PAPIRMRAPRVQQR  407


>sp|Q0ILZ4|RH9_ORYSJ DEAD-box ATP-dependent RNA helicase 9 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os12g0611200 PE=2 SV=1
Length=628

 Score = 47.0 bits (110),  Expect = 5e-04, Method: Compositional matrix adjust.
 Identities = 33/115 (29%), Positives = 55/115 (48%), Gaps = 20/115 (17%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQ  428
            I+FT+T++ A                  R    +G     Q+ H  +TQ  ++  ++ F+
Sbjct  346  IVFTQTKRDAD-----------------RLSYTMGRSFQCQALHGDITQAQRERTLKGFR  388

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFV  482
            +G  N+L+AT VA  GLDIP+ ++V+ + L  +    V   GR  RA +   A V
Sbjct  389  EGHFNILIATDVAARGLDIPNVDLVIHFELPNSSELFVHRSGRTGRAGKKGKAIV  443


>sp|Q914K8|Y022_SIFVH Putative helicase 22 OS=Sulfolobus islandicus 
filamentous virus (isolate Iceland/Hveragerdi) OX=654908 
GN=SIFV0022 PE=4 SV=1
Length=559

 Score = 47.0 bits (110),  Expect = 5e-04, Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 81/183 (44%), Gaps = 38/183 (21%)

Query  1    MELRSYQWEVIMPALEGKNII----IWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNR  56
             E+R+YQ   I   +   N+I    I  PTG+GK+  A   A   L+  + AK+V  VN 
Sbjct  172  FEMRNYQINSIKSWVSDVNVIGNGIIKAPTGSGKSVIAILSALEILKNKNNAKIVYAVNS  231

Query  57   VHLVTQHGEEFRRMLDGRWTVTTLSGDM-----GPRAGFGHLARCHDLLICTAELLQMAL  111
              L+ Q  + F +  D  + +  +SG++     G R+ F  L+            +    
Sbjct  232  TTLLKQF-QNFAKKEDLPFVL--VSGEIDEIKKGERSDFIALS------------ISYYY  276

Query  112  TSPEEEEHVEL----TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLT  167
            +  +  EH +L    T   L+++DE HHT  + V ++++            P    LGL+
Sbjct  277  SKKKRNEHEKLKELVTNADLVIIDEAHHTPANIVKSLLLD----------SPNSIRLGLS  326

Query  168  ASP  170
            A+P
Sbjct  327  ATP  329


 Score = 40.0 bits (92),  Expect = 0.078, Method: Compositional matrix adjust.
 Identities = 22/63 (35%), Positives = 37/63 (59%), Gaps = 2/63 (3%)

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
            S  T + +R   E I+  ++  L +L++TS+A+EGLDIP+  +VV      + I ++Q  
Sbjct  454  SSKTKLEER--MEKIEALKNEKLQVLISTSLADEGLDIPNLRLVVLLTQGKSRIKLIQRI  511

Query  470  GRA  472
            GR 
Sbjct  512  GRV  514


>sp|Q54CE0|DDX17_DICDI Probable ATP-dependent RNA helicase ddx17 
OS=Dictyostelium discoideum OX=44689 GN=ddx17 PE=3 SV=1
Length=785

 Score = 47.4 bits (111),  Expect = 5e-04, Method: Compositional matrix adjust.
 Identities = 47/158 (30%), Positives = 71/158 (45%), Gaps = 24/158 (15%)

Query  351  LEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSS  410
             E  E++L    S     + I+F  TR+    L   LQ   G +++ I        GN S
Sbjct  613  FEKKERMLSFLGSVGRDEKVIVFAETRKGVDDLQRVLQFS-GFKSIGIH-------GNKS  664

Query  411  QSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR-  469
            Q     +RD   V+ +F++G + +++AT VA  GLDI     VV Y    N I +   R 
Sbjct  665  QP----ERD--FVLSQFKNGMVPIMIATDVASRGLDIKDIKYVVNYD-FPNTIEVYIHRI  717

Query  470  ---GRARADQSVYAFVATEGSRELKRELINEALETLME  504
                RA A    Y+ + T+ +R     L NE ++ L E
Sbjct  718  GRTARAGASGVSYSLLTTDNAR-----LANELIKVLTE  750


>sp|Q9DF35|DD21A_XENLA Nucleolar RNA helicase 2-A OS=Xenopus laevis 
OX=8355 GN=ddx21-a PE=2 SV=2
Length=759

 Score = 47.0 bits (110),  Expect = 5e-04, Method: Compositional matrix adjust.
 Identities = 38/137 (28%), Positives = 64/137 (47%), Gaps = 20/137 (15%)

Query  338  LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD  397
            + HLA     + K  +L  ++Q    S +  + IIF  ++  AH+L              
Sbjct  404  VEHLAIECTRSQKAAVLGDLVQ--VYSGSHGKTIIFCDSKLEAHTL--------------  447

Query  398  IRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVR  455
              A        S++S H  + Q++++ V++ F+ GT  +L+AT+VA  GLDIP  ++VV 
Sbjct  448  --ATSCGSLKQSAKSLHGDLQQKEREVVLKGFRQGTFEVLIATNVAARGLDIPEVDLVVL  505

Query  456  YGLLTNEISMVQARGRA  472
            Y       + V   GR 
Sbjct  506  YSAPKEADAYVHRSGRT  522


>sp|Q0UK12|RRP3_PHANO ATP-dependent rRNA helicase RRP3 OS=Phaeosphaeria 
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) 
OX=321614 GN=RRP3 PE=3 SV=2
Length=546

 Score = 47.0 bits (110),  Expect = 5e-04, Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 53/108 (49%), Gaps = 15/108 (14%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            I+FTRT      L + L+   G Q + +  QL       SQS  +        + KF+  
Sbjct  360  ILFTRTVNETQRLAVLLRTL-GFQALPLHGQL-------SQSNRLG------ALNKFKAK  405

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQS  477
              ++LVAT VA  GLDIP  ++VV + L  +  + V   GR ARA +S
Sbjct  406  ARDILVATDVAARGLDIPSVDLVVNFDLPHDSETYVHRVGRTARAGKS  453


>sp|Q6FP38|DBP1_CANGA ATP-dependent RNA helicase DBP1 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DBP1 PE=3 SV=1
Length=604

 Score = 47.0 bits (110),  Expect = 6e-04, Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 34/56 (61%), Gaps = 0/56 (0%)

Query  416  TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
            TQ +++  +  F++G  N+LVAT+VA  GLDIP+   V+ Y L T+    V   GR
Sbjct  430  TQAERERALHAFRNGIANILVATAVAARGLDIPNVTNVINYDLPTDIDDYVHRIGR  485


>sp|Q2JN87|UVRB_SYNJB UvrABC system protein B OS=Synechococcus 
sp. (strain JA-2-3B'a(2-13)) OX=321332 GN=uvrB PE=3 SV=1
Length=695

 Score = 47.0 bits (110),  Expect = 6e-04, Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 57/109 (52%), Gaps = 19/109 (17%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            R I+ T T++ A  L  +LQ++       IR + L         + +T  ++ E++Q F+
Sbjct  472  RVIVTTLTKRMAEDLTEYLQER------GIRVRYL--------HSEITSIERIEILQDFR  517

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            +G  ++LV  ++  EGLD+P  ++V      + G L  E S++Q  GRA
Sbjct  518  EGAFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQMIGRA  566


>sp|P38712|RRP3_YEAST ATP-dependent rRNA helicase RRP3 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 
GN=RRP3 PE=1 SV=2
Length=501

 Score = 46.6 bits (109),  Expect = 6e-04, Method: Compositional matrix adjust.
 Identities = 38/109 (35%), Positives = 54/109 (50%), Gaps = 17/109 (16%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGL-QTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD  429
            IIFTRT+ +A  L        GL   ++  A  L G  N +Q        +   +  F+ 
Sbjct  325  IIFTRTKANAERL-------SGLCNLLEFSATALHGDLNQNQ--------RMGSLDLFKA  369

Query  430  GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQS  477
            G  ++LVAT VA  GLDIP  ++VV Y +  +  S +   GR ARA +S
Sbjct  370  GKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRS  418


>sp|P33906|DEAD_KLEPN ATP-dependent RNA helicase DeaD OS=Klebsiella 
pneumoniae OX=573 GN=deaD PE=3 SV=3
Length=643

 Score = 46.6 bits (109),  Expect = 6e-04, Method: Compositional matrix adjust.
 Identities = 43/154 (28%), Positives = 78/154 (51%), Gaps = 20/154 (13%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            IIF RT+ +   +   L++               G  +++ +  M Q  +++ +++ +DG
Sbjct  249  IIFVRTKNATLEVAEALERN--------------GYNSAALNGDMNQALREQALERLKDG  294

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRE  489
             L++L+AT VA  GLD+   ++VV Y +  +  S V   GR  RA ++  A +  E +RE
Sbjct  295  RLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVE-NRE  353

Query  490  LKRELINEALETLMEQAVAAVQKMDQAEYQAKIR  523
             +R L N  +E  M+  +  V+ +  AE  +K R
Sbjct  354  -RRLLRN--IERTMKLTIPEVE-LPNAELLSKRR  383


>sp|Q8XA87|DEAD_ECO57 ATP-dependent RNA helicase DeaD OS=Escherichia 
coli O157:H7 OX=83334 GN=deaD PE=3 SV=3
Length=629

 Score = 46.6 bits (109),  Expect = 7e-04, Method: Compositional matrix adjust.
 Identities = 43/154 (28%), Positives = 77/154 (50%), Gaps = 20/154 (13%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            IIF RT+ +   +   L++               G  +++ +  M Q  +++ +++ +DG
Sbjct  249  IIFVRTKNATLEVAEALERN--------------GYNSAALNGDMNQALREQTLERLKDG  294

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRE  489
             L++L+AT VA  GLD+   ++VV Y +  +  S V   GR  RA ++  A +  E +RE
Sbjct  295  RLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVE-NRE  353

Query  490  LKRELINEALETLMEQAVAAVQKMDQAEYQAKIR  523
             +R L N  +E  M+  +  V+ +  AE   K R
Sbjct  354  -RRLLRN--IERTMKLTIPEVE-LPNAELLGKRR  383


>sp|P0A9P8|DEAD_SHIFL ATP-dependent RNA helicase DeaD OS=Shigella 
flexneri OX=623 GN=deaD PE=3 SV=2
Length=629

 Score = 46.6 bits (109),  Expect = 7e-04, Method: Compositional matrix adjust.
 Identities = 43/154 (28%), Positives = 77/154 (50%), Gaps = 20/154 (13%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            IIF RT+ +   +   L++               G  +++ +  M Q  +++ +++ +DG
Sbjct  249  IIFVRTKNATLEVAEALERN--------------GYNSAALNGDMNQALREQTLERLKDG  294

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRE  489
             L++L+AT VA  GLD+   ++VV Y +  +  S V   GR  RA ++  A +  E +RE
Sbjct  295  RLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVE-NRE  353

Query  490  LKRELINEALETLMEQAVAAVQKMDQAEYQAKIR  523
             +R L N  +E  M+  +  V+ +  AE   K R
Sbjct  354  -RRLLRN--IERTMKLTIPEVE-LPNAELLGKRR  383


>sp|P0A9P6|DEAD_ECOLI ATP-dependent RNA helicase DeaD OS=Escherichia 
coli (strain K12) OX=83333 GN=deaD PE=1 SV=2
Length=629

 Score = 46.6 bits (109),  Expect = 7e-04, Method: Compositional matrix adjust.
 Identities = 43/154 (28%), Positives = 77/154 (50%), Gaps = 20/154 (13%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            IIF RT+ +   +   L++               G  +++ +  M Q  +++ +++ +DG
Sbjct  249  IIFVRTKNATLEVAEALERN--------------GYNSAALNGDMNQALREQTLERLKDG  294

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRE  489
             L++L+AT VA  GLD+   ++VV Y +  +  S V   GR  RA ++  A +  E +RE
Sbjct  295  RLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVE-NRE  353

Query  490  LKRELINEALETLMEQAVAAVQKMDQAEYQAKIR  523
             +R L N  +E  M+  +  V+ +  AE   K R
Sbjct  354  -RRLLRN--IERTMKLTIPEVE-LPNAELLGKRR  383


>sp|P0A9P7|DEAD_ECOL6 ATP-dependent RNA helicase DeaD OS=Escherichia 
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 
GN=deaD PE=3 SV=2
Length=629

 Score = 46.6 bits (109),  Expect = 7e-04, Method: Compositional matrix adjust.
 Identities = 43/154 (28%), Positives = 77/154 (50%), Gaps = 20/154 (13%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            IIF RT+ +   +   L++               G  +++ +  M Q  +++ +++ +DG
Sbjct  249  IIFVRTKNATLEVAEALERN--------------GYNSAALNGDMNQALREQTLERLKDG  294

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRE  489
             L++L+AT VA  GLD+   ++VV Y +  +  S V   GR  RA ++  A +  E +RE
Sbjct  295  RLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVE-NRE  353

Query  490  LKRELINEALETLMEQAVAAVQKMDQAEYQAKIR  523
             +R L N  +E  M+  +  V+ +  AE   K R
Sbjct  354  -RRLLRN--IERTMKLTIPEVE-LPNAELLGKRR  383


>sp|Q7RY59|RRP3_NEUCR ATP-dependent rRNA helicase rrp-3 OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 
/ DSM 1257 / FGSC 987) OX=367110 GN=rrp-3 PE=3 SV=1
Length=515

 Score = 46.6 bits (109),  Expect = 7e-04, Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 15/112 (13%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            IIFTRT      + + L+               +G G       ++Q  +   + KF+ G
Sbjct  334  IIFTRTVLETQRIAILLRT--------------LGMGAIPLHGGLSQSARLGALNKFRAG  379

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF  481
            +  +LVAT VA  GLDIP+ + V+ + L  +  + V   GR ARA +S +A 
Sbjct  380  SREILVATDVAARGLDIPNVDCVINHDLPQDSKTYVHRVGRTARAGKSGHAI  431


>sp|A5E0U9|DBP8_LODEL ATP-dependent RNA helicase DBP8 OS=Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=DBP8 PE=3 SV=1
Length=444

 Score = 46.2 bits (108),  Expect = 7e-04, Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 66/129 (51%), Gaps = 9/129 (7%)

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
            +S  + M Q ++   + +F+ G   +L+AT VA  GLDIP   +VV + +  +    +  
Sbjct  284  ASLHSEMPQTERTNSLHRFKAGAARILIATDVASRGLDIPTVELVVNFDIPADPDDFIHR  343

Query  469  RGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD-LQ  526
             GR ARA +   A ++  G ++++R      +E++ E+    ++ ++  +    I D LQ
Sbjct  344  VGRTARAGRKGDA-ISIIGEKDIER------IESIEERINKKMELLEGVDDDKVINDSLQ  396

Query  527  QAALTKRAA  535
            +A   KR A
Sbjct  397  KATTAKREA  405


>sp|Q6CLR3|DED1_KLULA ATP-dependent RNA helicase DED1 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 
1267 / NRRL Y-1140 / WM37) OX=284590 GN=DED1 PE=3 SV=1
Length=627

 Score = 46.6 bits (109),  Expect = 8e-04, Method: Compositional matrix adjust.
 Identities = 35/137 (26%), Positives = 65/137 (47%), Gaps = 18/137 (13%)

Query  363  SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE  422
            ++SN    +IF  T+++A SL  +L  + G +   I                 TQ +++ 
Sbjct  412  AASNEGLTLIFVETKRAADSLTDFLIME-GFKATAIHGD-------------RTQGERER  457

Query  423  VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGRARADQSVY  479
             +  F+ G   +LVAT+VA  GLDIP+   V+ + L   + + +  +   GRA  +  V 
Sbjct  458  ALSAFKTGRATILVATAVAARGLDIPNVTHVINFDLPNDIDDYVHRIGRTGRA-GNTGVA  516

Query  480  AFVATEGSRELKRELIN  496
                  G++ + +EL++
Sbjct  517  TTFFNRGNKNVAKELVS  533


>sp|Q9VIF6|DDX47_DROME ATP-dependent RNA helicase DDX47 OS=Drosophila 
melanogaster OX=7227 GN=pths PE=1 SV=1
Length=507

 Score = 46.2 bits (108),  Expect = 8e-04, Method: Compositional matrix adjust.
 Identities = 25/70 (36%), Positives = 39/70 (56%), Gaps = 1/70 (1%)

Query  414  HMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-A  472
             M+Q  +   + KF+    ++L++T VA  GLDIPH +VVV + + T+    +   GR A
Sbjct  333  QMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTA  392

Query  473  RADQSVYAFV  482
            RA +S  A  
Sbjct  393  RAGRSGKAIT  402


>sp|Q96GQ7|DDX27_HUMAN Probable ATP-dependent RNA helicase DDX27 
OS=Homo sapiens OX=9606 GN=DDX27 PE=1 SV=2
Length=796

 Score = 46.6 bits (109),  Expect = 8e-04, Method: Compositional matrix adjust.
 Identities = 40/134 (30%), Positives = 67/134 (50%), Gaps = 24/134 (18%)

Query  371  IIFTRTRQSAHSL--LLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            ++FT+T++ AH +  LL L    GLQ  ++        GN SQ+  +      E +++F+
Sbjct  467  MLFTQTKKQAHRMHILLGLM---GLQVGELH-------GNLSQTQRL------EALRRFK  510

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR----ARADQSVYAFVAT  484
            D  +++LVAT VA  GLDI     V+ + +       V   GR     RA +SV   +  
Sbjct  511  DEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVS--LVG  568

Query  485  EGSRELKRELINEA  498
            E  R++ +E++  A
Sbjct  569  EDERKMLKEIVKAA  582


>sp|A6R3L3|DED1_AJECN ATP-dependent RNA helicase DED1 OS=Ajellomyces 
capsulatus (strain NAm1 / WU24) OX=2059318 GN=DED1 PE=3 
SV=1
Length=694

 Score = 46.6 bits (109),  Expect = 8e-04, Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 5/85 (6%)

Query  416  TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS----MVQARGR  471
            TQR+++  ++ F+ G   +LVAT+VA  GLDIP+   V+ Y  L NEI      +   GR
Sbjct  496  TQRERERALELFRTGRCPILVATAVAARGLDIPNVTHVINYD-LPNEIDDYVHRIGRTGR  554

Query  472  ARADQSVYAFVATEGSRELKRELIN  496
            A       AF +   + ++ R L++
Sbjct  555  AGNTGISTAFFSRSKNFKIARSLVD  579


>sp|A4STJ7|RHLB_AERS4 ATP-dependent RNA helicase RhlB OS=Aeromonas 
salmonicida (strain A449) OX=382245 GN=rhlB PE=3 SV=1
Length=429

 Score = 46.2 bits (108),  Expect = 8e-04, Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 49/110 (45%), Gaps = 15/110 (14%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            + I+F  T+     +  WL+          R  LL G         + Q+ + ++++ F 
Sbjct  258  KAIVFANTKHVCEDVHAWLENDGH------RVGLLTG--------DVPQKKRMKILEDFT  303

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQS  477
             GTL++LVAT VA  GL IP    V  Y L  +    V   GR  RA +S
Sbjct  304  KGTLDILVATDVAARGLHIPDVTHVFNYDLPDDAEDYVHRIGRTGRAGKS  353


>sp|Q1DZK8|DBP3_COCIM ATP-dependent RNA helicase DBP3 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=DBP3 PE=3 SV=2
Length=515

 Score = 46.2 bits (108),  Expect = 8e-04, Method: Compositional matrix adjust.
 Identities = 41/149 (28%), Positives = 71/149 (48%), Gaps = 15/149 (10%)

Query  398  IRAQLLIGA-GNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV  454
            +R +  IG+ G      H  M+Q ++   ++ F+ G+++LLVAT VA  GLDIP   +V+
Sbjct  364  MRVERFIGSKGFKVAGIHGDMSQTERFRSLEAFKSGSISLLVATDVAARGLDIPAVKLVL  423

Query  455  RYGL---LTNEISMVQARGRARADQSVYAFVATEGSRELKRELIN-------EALETLME  504
                   + + +  +   GRA A + +   + TE  + L   LIN       +  E+L++
Sbjct  424  NVTFPLTIEDYVHRIGRTGRAGA-EGLAITLFTERDKALSGPLINVLRAADQDVPESLLK  482

Query  505  QAVAAVQKMDQAEYQAKIRDLQQAALTKR  533
               A V+K     Y A  R++    +  R
Sbjct  483  FG-ATVKKKQHESYGAFFREMDTTKVASR  510


>sp|O13370|DED1_SCHPO ATP-dependent RNA helicase ded1 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=ded1 
PE=1 SV=1
Length=636

 Score = 46.6 bits (109),  Expect = 8e-04, Method: Compositional matrix adjust.
 Identities = 31/105 (30%), Positives = 53/105 (50%), Gaps = 6/105 (6%)

Query  396  VDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV  453
             D     L+ +   + S H   TQR+++  ++ F+ G  +++VAT+VA  GLDIP+   V
Sbjct  443  ADTLTDYLLNSNFPATSIHGDRTQRERERALELFRSGRTSIMVATAVASRGLDIPNVTHV  502

Query  454  VRYGLLT---NEISMVQARGRARADQSVYAFVATEGSRELKRELI  495
            + Y L T   + +  +   GRA       AF     ++ + +ELI
Sbjct  503  INYDLPTDIDDYVHRIGRTGRAGNTGQAVAFF-NRNNKGIAKELI  546


>sp|Q4A127|HSDR_STAS1 Type I restriction enzyme SsaAORF53P endonuclease 
subunit OS=Staphylococcus saprophyticus subsp. saprophyticus 
(strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 
7292 / S-41) OX=342451 GN=hsdR PE=3 SV=1
Length=930

 Score = 46.6 bits (109),  Expect = 8e-04, Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 74/185 (40%), Gaps = 18/185 (10%)

Query  1    MELRSYQWE----VIMPALE-GKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVN  55
            M +R YQ      +I  A E   N  IW  TG+GKT  +   ++   E  D  KV+ LV+
Sbjct  239  MAMRPYQVHAVEALIHQATETSNNGYIWHTTGSGKTLTSFKASQVLSEQDDIKKVIFLVD  298

Query  56   RVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE  115
            R  L +Q  EEF +   G    T  +  +  +     L     L++ T + +  A+ +  
Sbjct  299  RKDLDSQTEEEFNKFSKGSVDKTNNTAQLVKQLKDKSLP----LIVTTIQKMSKAIQNNA  354

Query  116  EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGA  175
            E      T   + ++DECH +    ++ ++   +            Q  G T +P     
Sbjct  355  EALDQYKTDKVVFIIDECHRSQFGDMHRIVRQHFNN---------AQYFGFTGTPRFEEN  405

Query  176  SKLDG  180
               DG
Sbjct  406  QSQDG  410


>sp|Q89AF9|DEAD_BUCBP ATP-dependent RNA helicase DeaD OS=Buchnera 
aphidicola subsp. Baizongia pistaciae (strain Bp) OX=224915 
GN=deaD PE=3 SV=1
Length=602

 Score = 46.2 bits (108),  Expect = 8e-04, Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 67/120 (56%), Gaps = 6/120 (5%)

Query  405  GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
            G  +++ +  M Q  +++ ++K +DG L++L+AT VA  GLD+   + V+ Y +  +  S
Sbjct  268  GYNSAALNGDMNQSLREQTLEKLKDGRLDILIATDVAARGLDVDRISFVINYDIPMDSES  327

Query  465  MVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIR  523
             V   GR  RA +   A +  E +RE +R L N  +E  M  +++ V  + ++++ +K R
Sbjct  328  YVHRIGRTGRAGRKGKALLFVE-NRE-RRLLRN--IERAMNISISEVN-LPKSDFLSKRR  382


>sp|Q4E162|IF4A_TRYCC Probable eukaryotic initiation factor 4A 
OS=Trypanosoma cruzi (strain CL Brener) OX=353153 GN=Tc00.1047053511585.190 
PE=3 SV=1
Length=404

 Score = 45.8 bits (107),  Expect = 9e-04, Method: Compositional matrix adjust.
 Identities = 29/105 (28%), Positives = 53/105 (50%), Gaps = 18/105 (17%)

Query  362  FSSSNSPRGIIFTRTRQSAHSLLLWLQQQ--QGLQTVDIRAQLLIGAGNSSQSTHMTQRD  419
            + + +  + +IF  TR+       WL QQ  Q   TV            S   + M ++D
Sbjct  263  YETVSIAQSVIFANTRRKVD----WLAQQLNQSNHTV------------SCMHSEMPKQD  306

Query  420  QQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
            +++V+  F++G+  +LV T +   G+D+ H N+V+ + L TN+ S
Sbjct  307  REKVMSTFRNGSSRVLVTTDLVARGIDVHHVNIVINFDLPTNKES  351


>sp|Q2UNB7|RRP3_ASPOR ATP-dependent rRNA helicase rrp3 OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=rrp3 
PE=3 SV=1
Length=472

 Score = 46.2 bits (108),  Expect = 9e-04, Method: Compositional matrix adjust.
 Identities = 34/111 (31%), Positives = 52/111 (47%), Gaps = 15/111 (14%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            IIF RT      L  +L+              L+G G       ++Q  +   + KF+  
Sbjct  296  IIFCRTVHETQRLSFFLR--------------LLGFGAIPLHGQLSQSARLGALGKFRSR  341

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYA  480
            + ++LVAT VA  GLDIP  +VV+ + L  +  + +   GR ARA +S  A
Sbjct  342  SRDILVATDVAARGLDIPSVDVVLNFDLPGDSKTFIHRIGRTARAGKSGVA  392


>sp|Q6CXW0|DBP8_KLULA ATP-dependent RNA helicase DBP8 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 
1267 / NRRL Y-1140 / WM37) OX=284590 GN=DBP8 PE=3 SV=1
Length=435

 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 49/184 (27%), Positives = 85/184 (46%), Gaps = 21/184 (11%)

Query  346  PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
            PE+ K   L +IL  +    +S   IIF     +A  L      ++ L+++D+R      
Sbjct  237  PEHVKESYLYQILTSEKYVKSS--CIIFVNRTVTAEIL------RRTLKSLDVRV-----  283

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM  465
               +S  + M Q+++   +Q+F+     +L+AT VA  GLDIP   +VV Y +  N  + 
Sbjct  284  ---TSLHSQMPQQERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTF  340

Query  466  VQARGR-ARADQ--SVYAFVATEGSRELK--RELINEALETLMEQAVAAVQKMDQAEYQA  520
            +   GR ARA +      FV  +  + ++   E IN+ +E   +    AV +    +  A
Sbjct  341  IHRAGRTARAGRHGESLCFVTEKDIQRVEAIEERINKKMEEFTDVGDTAVIRKSLTKVTA  400

Query  521  KIRD  524
              R+
Sbjct  401  AKRE  404


>sp|Q75EW9|RRP3_EREGS ATP-dependent rRNA helicase RRP3 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=RRP3 PE=3 SV=2
Length=486

 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 54/109 (50%), Gaps = 17/109 (16%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGL-QTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD  429
            I+FTRT+ +A  +        GL   ++  A  L G  N +Q T          +  F+ 
Sbjct  310  IVFTRTKANAERI-------SGLCNLLEFSATALHGDLNQNQRTG--------ALDLFKA  354

Query  430  GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQS  477
            G  ++LVAT VA  GLDIP  ++V+ Y +  +  S +   GR ARA +S
Sbjct  355  GKKSILVATDVAARGLDIPSVDLVINYDIPVDSKSYIHRVGRTARAGRS  403


>sp|A1A4H6|DDX27_BOVIN Probable ATP-dependent RNA helicase DDX27 
OS=Bos taurus OX=9913 GN=DDX27 PE=2 SV=1
Length=765

 Score = 46.2 bits (108),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 38/132 (29%), Positives = 66/132 (50%), Gaps = 20/132 (15%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            ++FT+T++ AH + + L    GLQ  ++        GN SQ+  +      E +++F+D 
Sbjct  436  MLFTQTKKQAHRMHILLGLM-GLQVGELH-------GNLSQTQRL------EALRRFKDE  481

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR----ARADQSVYAFVATEG  486
             +++LVAT VA  GLDI     V+ + +       V   GR     RA +SV   +  E 
Sbjct  482  QIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVS--LVGEE  539

Query  487  SRELKRELINEA  498
             R++ +E++  A
Sbjct  540  ERKMLKEIVKAA  551


>sp|Q07736|T1RA_ECOLX Type I restriction enzyme EcoAI endonuclease 
subunit OS=Escherichia coli OX=562 GN=hsdR PE=1 SV=1
Length=810

 Score = 46.2 bits (108),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 80/179 (45%), Gaps = 36/179 (20%)

Query  4    RSYQWEVIMPALE----GKN-IIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVH  58
            R YQ + I   +E    G+N +++ + TG GKT  A  +  R  ++ +  +++ L +R  
Sbjct  171  RYYQLQAINKTIEAVSNGQNRVLLVMATGTGKTYTAFQIIWRLWKSKNKKRILFLADRNI  230

Query  59   LVTQ-HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE  117
            LV Q    +F+        +T +SG     A   HLA            L  A+T PEE+
Sbjct  231  LVDQTKNNDFQPFGTA---MTKVSGRTIDPAYEIHLA------------LYQAITGPEED  275

Query  118  E----HVELTVFSLIVVDECHH--THKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASP  170
            +     V    F LIV+DECH     +D+ +  I+  Y     Q        +GLTA+P
Sbjct  276  QKAFKQVAPDFFDLIVIDECHRGSASEDSAWREILD-YFSSATQ--------IGLTATP  325


>sp|Q59PR3|DBP8_CANAL ATP-dependent RNA helicase DBP8 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DBP8 
PE=3 SV=1
Length=440

 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 74/164 (45%), Gaps = 25/164 (15%)

Query  346  PENPKLEMLEKILQ-RQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI  404
            P   K   L  IL   QF  S +   +IF     +A  L      ++ L+ +D R     
Sbjct  234  PSYVKEAYLNSILHLEQFKDSTA---VIFVNRTTTAEVL------RRMLRKLDFRV----  280

Query  405  GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
                +S  + M Q ++   + +F+ G   +L+AT VA  GLDIP   +V+ + +  +   
Sbjct  281  ----ASLHSEMPQSERTNSLHRFKAGAARILIATDVASRGLDIPTVELVINFDIPADPDD  336

Query  465  MVQARGR-ARADQSVYAFVATEGSRELKR-----ELINEALETL  502
             +   GR ARA +   A V+  G +++ R     E IN+ +E L
Sbjct  337  FIHRVGRTARAGRKGDA-VSIIGEKDIDRIQSIEERINKKMELL  379


>sp|Q5A4E2|DED1_CANAL ATP-dependent RNA helicase DED1 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DED1 
PE=3 SV=1
Length=672

 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 30/101 (30%), Positives = 50/101 (50%), Gaps = 14/101 (14%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            I+FT T++ A +L  +L  Q G     I                 +Q ++++ +  F++G
Sbjct  447  IVFTETKRMADNLADYLYDQ-GFPATAIHGD-------------RSQYEREKALAAFKNG  492

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
               +LVAT+VA  GLDIP+ + V+ Y L ++    V   GR
Sbjct  493  AAPILVATAVAARGLDIPNVSHVINYDLPSDIDDYVHRIGR  533


>sp|C4K8M8|RHLB_HAMD5 ATP-dependent RNA helicase RhlB OS=Hamiltonella 
defensa subsp. Acyrthosiphon pisum (strain 5AT) OX=572265 
GN=rhlB PE=3 SV=1
Length=422

 Score = 45.4 bits (106),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 76/185 (41%), Gaps = 44/185 (24%)

Query  323  AERRLLALFDD----RKNELAHLATHGPENPKLEMLEKI---LQRQ-FSSSNSP------  368
            AE+RL  LF      R  EL+    + PE  ++E L+KI   +Q + F  SN        
Sbjct  189  AEKRLNMLFSATLSYRVRELSFEQMNHPEYIEVEPLQKIGSQIQEELFYPSNEDKMRLLQ  248

Query  369  ---------RGIIFTRTRQSAHSL---LLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT  416
                     R IIF  T+Q    +   L+    + GL T D+                  
Sbjct  249  TLIEEEWPDRCIIFANTKQRCEDIWGHLVADGHRVGLLTGDV-----------------A  291

Query  417  QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARAD  475
            QR + +++  F  G L++LVAT VA  GL IP    V  Y L  N    +   GR  RA 
Sbjct  292  QRKRIQILDDFSKGYLDILVATDVAARGLHIPKVTHVFNYDLPENVEDYIHRIGRTGRAG  351

Query  476  QSVYA  480
            +  Y+
Sbjct  352  EKGYS  356


>sp|Q9ZDW2|UVRB_RICPR UvrABC system protein B OS=Rickettsia prowazekii 
(strain Madrid E) OX=272947 GN=uvrB PE=3 SV=1
Length=662

 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 20/56 (36%), Positives = 35/56 (63%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+++  + GT+++LV  ++  EG+DIP C +V      + G L +E S++Q  GRA
Sbjct  486  EILRNLRQGTIDILVGINLLREGIDIPECGLVAILDADKEGFLRSETSLIQTIGRA  541


>sp|P09052|VASA1_DROME ATP-dependent RNA helicase vasa OS=Drosophila 
melanogaster OX=7227 GN=vas PE=1 SV=3
Length=661

 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 61/128 (48%), Gaps = 17/128 (13%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            I+F  T++ A  L  +L +++   T  I    L            +QR+Q   ++ F++G
Sbjct  493  IVFVETKRGADFLASFLSEKE-FPTTSIHGDRL-----------QSQREQ--ALRDFKNG  538

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGRARADQSVYAFVATEGS  487
            ++ +L+ATSVA  GLDI +   V+ Y +   + + +  +   GR   +    +F   E  
Sbjct  539  SMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKD  598

Query  488  RELKRELI  495
            R +  +L+
Sbjct  599  RAIAADLV  606


>sp|B7VME9|RHLB_VIBA3 ATP-dependent RNA helicase RhlB OS=Vibrio 
atlanticus (strain LGP32) OX=575788 GN=rhlB PE=3 SV=1
Length=436

 Score = 45.4 bits (106),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 110/262 (42%), Gaps = 58/262 (22%)

Query  253  FGTQMYEQQVVKLSEAAAL--------AGLQEQRVYALHLRRYNDALLIHDTVRAVDALA  304
            +G + Y++Q+ K+ E A +            +Q+V+ L+   +  A+++ +  R  D L 
Sbjct  119  YGGESYDKQLGKIEEGADILIGTTGRIIDFYKQKVFNLN---HIQAVVLDEADRMFD-LG  174

Query  305  ALQD--FYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPEN----PKLEML  354
             ++D  F  R      ++   + RL  LF      R  ELA    H PE+    P+ +  
Sbjct  175  FIKDIRFLFR------RMPEPKDRLNMLFSATLSYRVQELAFEHMHNPEHVVVEPERKTG  228

Query  355  EKILQRQFSSSNS---------------PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIR  399
             +I +  F  SN                 R IIF  T+    S+  W      L     R
Sbjct  229  HRIQEELFYPSNEHKMALLQTLIEEEWPDRAIIFANTKHKCESV--WGH----LAADGHR  282

Query  400  AQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL  459
              LL G         + Q+ +++++++F  G ++LLVAT VA  GL IP    V  + L 
Sbjct  283  VGLLTG--------DVPQKKREKILEQFTKGDVDLLVATDVAARGLHIPQVTHVFNFDLP  334

Query  460  TNEISMVQARGR-ARADQSVYA  480
             +    V   GR  RA +S ++
Sbjct  335  DDCEDYVHRIGRTGRAGESGHS  356


>sp|Q9H0S4|DDX47_HUMAN Probable ATP-dependent RNA helicase DDX47 
OS=Homo sapiens OX=9606 GN=DDX47 PE=1 SV=1
Length=455

 Score = 45.4 bits (106),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 1/65 (2%)

Query  414  HMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-A  472
             M+Q  +   + KF+    ++L+AT VA  GLDIPH +VVV + + T+    +   GR A
Sbjct  296  QMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTA  355

Query  473  RADQS  477
            RA +S
Sbjct  356  RAGRS  360


>sp|Q8LA13|RH11_ARATH DEAD-box ATP-dependent RNA helicase 11 OS=Arabidopsis 
thaliana OX=3702 GN=RH11 PE=1 SV=1
Length=612

 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 40/140 (29%), Positives = 64/140 (46%), Gaps = 21/140 (15%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            ++F  T++ A +L  WL   +   T              S     TQ++++  ++ F+ G
Sbjct  412  LVFVETKRGADTLENWLCMNEFPAT--------------SIHGDRTQQEREVALRSFKTG  457

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGRARADQSVYAFVATEGS  487
               +LVAT VA  GLDIPH   VV + L   + + +  +   GRA       AF   E +
Sbjct  458  RTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFF-NENN  516

Query  488  RELKR---ELINEALETLME  504
             +L R   EL+ EA + + E
Sbjct  517  AQLARSLAELMQEANQEVPE  536


>sp|Q5VQL1|RH14_ORYSJ DEAD-box ATP-dependent RNA helicase 14 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os01g0172200 PE=2 
SV=1
Length=708

 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 44/142 (31%), Positives = 64/142 (45%), Gaps = 21/142 (15%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K   L++IL+ Q   S   + IIF  T++    L   L +Q G   +          G+ 
Sbjct  411  KSRRLDQILRSQEPGS---KIIIFCSTKRMCDQLARNLARQYGASAIH---------GDK  458

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT---NEISMV  466
            SQ+    +RD   V+ +F+ G   +LVAT VA  GLDI    VVV Y   T   + +  +
Sbjct  459  SQA----ERD--SVLSEFRSGRCPILVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRI  512

Query  467  QARGRARADQSVYAFVATEGSR  488
               GRA A    Y F   + S+
Sbjct  513  GRTGRAGATGVAYTFFCDQDSK  534


>sp|B5FF87|RHLB_ALIFM ATP-dependent RNA helicase RhlB OS=Aliivibrio 
fischeri (strain MJ11) OX=388396 GN=rhlB PE=3 SV=1
Length=432

 Score = 45.4 bits (106),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 88/203 (43%), Gaps = 37/203 (18%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +++ ++      R IIF  T+    S+  W      L     R  LL G    
Sbjct  243  KMALLQTLIEEEWPD----RAIIFANTKHKCESV--WGH----LAADKHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE----ISM  465
                 + Q+ ++ ++++F  G +++LVAT VA  GL IP    V  +  L NE    +  
Sbjct  289  ----DVPQKKRERILEEFTQGNVDILVATDVAARGLHIPQVTHVFNFD-LPNEAEDYVHR  343

Query  466  VQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK--IR  523
            +   GRA A  +  +F   E +  L       A+E  +E ++       Q++Y A   + 
Sbjct  344  IGRTGRAGASGNSISFACEEYAINLP------AIEEYIEHSIP------QSDYDASALLE  391

Query  524  DLQQAALTKRAAQAAQRENQRQQ  546
            DL      +R  Q  +R N  Q+
Sbjct  392  DLPAPLRLQRRPQQNRRNNNGQR  414


>sp|Q6CT85|RRP3_KLULA ATP-dependent rRNA helicase RRP3 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / 
NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=RRP3 PE=3 SV=1
Length=487

 Score = 45.4 bits (106),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 15/108 (14%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            I+FTRT+ +A  +            ++  A  L G  N +Q T          +  F+ G
Sbjct  311  IVFTRTKANAERI------SNLCNLLEFSATALHGDLNQNQRTG--------ALDLFKAG  356

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQS  477
              ++LVAT VA  GLDIP  ++V+ Y +  +  S +   GR ARA +S
Sbjct  357  KRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRS  404


>sp|Q5HJH8|HSDR_STAAC Type I restriction enzyme SauCOLORF180P 
endonuclease subunit OS=Staphylococcus aureus (strain COL) OX=93062 
GN=hsdR PE=3 SV=1
Length=929

 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 43/187 (23%), Positives = 78/187 (42%), Gaps = 22/187 (12%)

Query  1    MELRSYQWEVIMPALE-----GKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVN  55
            M +R YQ   +   ++     G N  +W  TG+GKT  +   ++   +  D  KV+ LV+
Sbjct  239  MAMRPYQVYAVEALIQQATETGNNGYVWHTTGSGKTLTSFKASQILSQQDDIKKVIFLVD  298

Query  56   RVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMAL--TS  113
            R  L +Q  EEF +   G    T  +  +  +     L     L++ T + +  A+   +
Sbjct  299  RKDLDSQTEEEFNKFAKGAVDKTFNTSQLVRQLNDKSLP----LIVTTIQKMAKAIQGNA  354

Query  114  PEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTG  173
            P  E++    V  + ++DECH +    ++ ++   +            Q  G T +P   
Sbjct  355  PLLEQYKTNKV--VFIIDECHRSQFGDMHRLVKQHFKN---------AQYFGFTGTPRFP  403

Query  174  GASKLDG  180
              S  DG
Sbjct  404  ENSSQDG  410


>sp|Q2R1M8|RH52C_ORYSJ DEAD-box ATP-dependent RNA helicase 52C 
OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0599500 PE=3 
SV=1
Length=623

 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 37/124 (30%), Positives = 56/124 (45%), Gaps = 16/124 (13%)

Query  359  QRQFSSSNSPR-GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ  417
            QR  ++   P   ++F  T++ A SL  WL               + G   +S      Q
Sbjct  407  QRDSATPGKPTLTLVFVETKRGADSLEHWL--------------CMNGFPATSIHGDRNQ  452

Query  418  RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQ  476
            ++++  ++ F+ G   +LVAT VA  GLDIPH   VV + L  +    V   GR  RA +
Sbjct  453  QEREYALRSFKSGHTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGK  512

Query  477  SVYA  480
            S  A
Sbjct  513  SGLA  516


>sp|Q5E8U5|RHLB_ALIF1 ATP-dependent RNA helicase RhlB OS=Aliivibrio 
fischeri (strain ATCC 700601 / ES114) OX=312309 GN=rhlB 
PE=3 SV=2
Length=432

 Score = 45.4 bits (106),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 88/203 (43%), Gaps = 37/203 (18%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +++ ++      R IIF  T+    S+  W      L     R  LL G    
Sbjct  243  KMALLQTLIEEEWPD----RAIIFANTKHKCESV--WGH----LAADKHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE----ISM  465
                 + Q+ ++ ++++F  G +++LVAT VA  GL IP    V  +  L NE    +  
Sbjct  289  ----DVPQKKRERILEEFTQGNVDILVATDVAARGLHIPQVTHVFNFD-LPNEAEDYVHR  343

Query  466  VQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK--IR  523
            +   GRA A  +  +F   E +  L       A+E  +E ++       Q++Y A   + 
Sbjct  344  IGRTGRAGASGNSISFACEEYAINLP------AIEEYIEHSIP------QSDYDASALLE  391

Query  524  DLQQAALTKRAAQAAQRENQRQQ  546
            DL      +R  Q  +R N  Q+
Sbjct  392  DLPAPLRLQRRPQQNRRNNNGQR  414


>sp|Q9CWX9|DDX47_MOUSE Probable ATP-dependent RNA helicase DDX47 
OS=Mus musculus OX=10090 GN=Ddx47 PE=2 SV=2
Length=455

 Score = 45.4 bits (106),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 1/65 (2%)

Query  414  HMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-A  472
             M+Q  +   + KF+    ++L+AT VA  GLDIPH +VVV + + T+    +   GR A
Sbjct  296  QMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTA  355

Query  473  RADQS  477
            RA +S
Sbjct  356  RAGRS  360


>sp|A4RK80|PRP28_PYRO7 Pre-mRNA-splicing ATP-dependent RNA helicase 
PRP28 OS=Pyricularia oryzae (strain 70-15 / ATCC MYA-4617 
/ FGSC 8958) OX=242507 GN=PRP28 PE=3 SV=1
Length=674

 Score = 45.4 bits (106),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 30/45 (67%), Gaps = 0/45 (0%)

Query  414  HMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL  458
            + TQ  ++  +Q F+DG  N+LVAT VA  GLDIP  ++V+ + +
Sbjct  564  NKTQDQREAALQSFRDGRTNVLVATDVAARGLDIPDVSLVINFNM  608


>sp|Q6CCZ1|PRP5_YARLI Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) 
OX=284591 GN=PRP5 PE=3 SV=1
Length=974

 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 99/245 (40%), Gaps = 49/245 (20%)

Query  298  RAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKI  357
            R+ D+L  ++       V  ++I     + + +F + K++   L         LE+L K 
Sbjct  592  RSSDSLGPIEIIVGARSVVASEIT----QFVEVFQNEKSKFPRL---------LEVLGKY  638

Query  358  LQRQFSSSNS----------------PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQ  401
              + F    S                P+ +IF   ++SA SLL                +
Sbjct  639  FAQGFFDEQSEGRVGTGESAATPIPNPKCLIFVERQESADSLL----------------K  682

Query  402  LLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL  459
             LI +G    S H    Q D+ + I  F+ G +++L+ATSVA  GLD+    +VV +   
Sbjct  683  ELIQSGYPCLSIHGGKEQADRDQAISDFKSGLVSVLIATSVAARGLDVKGLGLVVNWDSP  742

Query  460  TNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEY  518
             +    V   GR  RA Q   A       +E     I+ A+++      A VQ M +  +
Sbjct  743  NHMEDYVHRVGRTGRAGQKGTALTFLLSDQERLAAEISRAIKSSGNAPPAPVQLMTE-RF  801

Query  519  QAKIR  523
            + K+R
Sbjct  802  EFKVR  806


>sp|D0PV95|DDX3_CAEEL ATP-dependent RNA helicase laf-1 OS=Caenorhabditis 
elegans OX=6239 GN=laf-1 PE=1 SV=1
Length=708

 Score = 45.4 bits (106),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 37/144 (26%), Positives = 67/144 (47%), Gaps = 16/144 (11%)

Query  363  SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE  422
            ++ +S   ++F  T++ A  L  +L +Q   + V I   L              Q ++++
Sbjct  488  ATGDSSLTLVFVETKRGASDLAYYLNRQN-YEVVTIHGDL-------------KQFEREK  533

Query  423  VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRAR--ADQSVYA  480
             +  F+ GT  +LVAT+VA  GLDIP+   V+ Y L ++    V   GR     +  +  
Sbjct  534  HLDLFRTGTAPILVATAVAARGLDIPNVKHVINYDLPSDVDEYVHRIGRTGRVGNVGLAT  593

Query  481  FVATEGSRELKRELINEALETLME  504
                + +R + REL++  +E   E
Sbjct  594  SFFNDKNRNIARELMDLIVEANQE  617


>sp|Q09903|DRS1_SCHPO ATP-dependent RNA helicase drs1 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=drs1 
PE=3 SV=1
Length=754

 Score = 45.4 bits (106),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 38/124 (31%), Positives = 63/124 (51%), Gaps = 16/124 (13%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            R IIF R++  AH + +      GL  + + A  + G+        ++Q  +   ++ F+
Sbjct  506  RTIIFFRSKAFAHKMRVIF----GL--LSLNATEIHGS--------LSQEQRVRALEDFR  551

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRY-GLLTNEISMVQARGRARADQSVYAF-VATEG  486
            DG  N L+AT VA  G+DI    VV+ Y    T+E+ + +    ARA +S  A  +A EG
Sbjct  552  DGKCNYLLATDVASRGIDIKGIEVVINYEAPATHEVYLHRVGRTARAGRSGRAITLAGEG  611

Query  487  SREL  490
             R++
Sbjct  612  DRKV  615


>sp|Q29S22|DDX47_BOVIN Probable ATP-dependent RNA helicase DDX47 
OS=Bos taurus OX=9913 GN=DDX47 PE=2 SV=1
Length=457

 Score = 45.4 bits (106),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 1/65 (2%)

Query  414  HMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-A  472
             M+Q  +   + KF+    ++L+AT VA  GLDIPH +VVV + + T+    +   GR A
Sbjct  298  QMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTA  357

Query  473  RADQS  477
            RA +S
Sbjct  358  RAGRS  362


>sp|A7MXT4|RHLB_VIBC1 ATP-dependent RNA helicase RhlB OS=Vibrio 
campbellii (strain ATCC BAA-1116) OX=2902295 GN=rhlB PE=3 
SV=1
Length=437

 Score = 45.1 bits (105),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 79/321 (25%), Positives = 131/321 (41%), Gaps = 65/321 (20%)

Query  253  FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR-YN----DALLIHDTVRAVDALAALQ  307
            +G + Y++Q+ KL +   +      R+   + +R +N     A+++ +  R  D L  ++
Sbjct  119  YGGESYDKQLAKLQDGVDILIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFD-LGFIK  177

Query  308  D--FYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPEN----PKLEMLEKI  357
            D  F  R      ++   + RL  LF      R  ELA    H PE+    P+ +   +I
Sbjct  178  DIRFLFR------RMPEPKERLNMLFSATLSYRVQELAFEHMHNPEHVVVEPEQKTGHRI  231

Query  358  LQRQFSSSNSP---------------RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL  402
             +  F  SN                 R I+F  T+    S+  W      L     R  L
Sbjct  232  QEELFYPSNEDKMALLQTLIEEEWPDRAIVFANTKHKCESI--WGH----LAADGHRVGL  285

Query  403  LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---L  459
            L G         + Q+ +++++++F  G ++LLVAT VA  GL IP    V  + L    
Sbjct  286  LTG--------DVPQKKREKILEQFTRGEVDLLVATDVAARGLHIPQVTHVFNFDLPDDC  337

Query  460  TNEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQ  519
             + +  +   GRA A     +F   + +  L        +E  +E A+  V   D +   
Sbjct  338  EDYVHRIGRTGRAGASGHSISFACEDYAINLP------PIEEYIEHAI-PVSDYDAS---  387

Query  520  AKIRDLQQAALTKRAAQAAQR  540
            A I+DL  A L  RA +  QR
Sbjct  388  ALIQDL-PAPLRMRAPRTQQR  407


>sp|C4LB49|RHLB_TOLAT ATP-dependent RNA helicase RhlB OS=Tolumonas 
auensis (strain DSM 9187 / NBRC 110442 / TA 4) OX=595494 
GN=rhlB PE=3 SV=1
Length=425

 Score = 45.1 bits (105),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 35/114 (31%), Positives = 51/114 (45%), Gaps = 15/114 (13%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            + IIF  T+     +  WLQ          R  LL G         + Q+ + ++++ F 
Sbjct  258  KAIIFANTKHGCEDVHAWLQADGH------RVGLLTG--------DVPQKKRLKILEDFT  303

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF  481
             G L++LVAT VA  GL IP  + V  Y L  +    V   GR  RA +S +A 
Sbjct  304  AGLLDVLVATDVAARGLHIPDVSHVFNYDLPDDAEDYVHRIGRTGRAGRSGHAI  357


>sp|Q2JRR3|UVRB_SYNJA UvrABC system protein B OS=Synechococcus 
sp. (strain JA-3-3Ab) OX=321327 GN=uvrB PE=3 SV=1
Length=695

 Score = 45.4 bits (106),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 57/109 (52%), Gaps = 19/109 (17%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            R I+ T T++ A  L  +LQ++       IR + L         + ++  ++ E++Q F+
Sbjct  472  RVIVTTLTKRMAEDLTEYLQER------GIRVRYL--------HSEISSIERIEILQDFR  517

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            +G  ++LV  ++  EGLD+P  ++V      + G L  E S++Q  GRA
Sbjct  518  EGAFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQMIGRA  566


>sp|P0CQ79|DBP3_CRYNB ATP-dependent RNA helicase DBP3 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=DBP3 PE=3 SV=1
Length=605

 Score = 45.4 bits (106),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 41/154 (27%), Positives = 69/154 (45%), Gaps = 14/154 (9%)

Query  385  LWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEG  444
            L+ ++ Q L+    RA   +GA +      MTQ  + + ++ F+ G  N+LVAT VA  G
Sbjct  447  LYKKEAQRLEYTIRRAGYAVGALHGD----MTQEARFKALEAFKTGQQNVLVATDVAARG  502

Query  445  LDIPHCNVV--VRYGLLTNEISMVQAR-GRA-RADQSVYAFVATEGSRELKREL------  494
            LDIP   +V  V + L T +      R GRA +  ++V  F      + L  E       
Sbjct  503  LDIPDVGLVINVTFPLTTEDFVHRCGRTGRAGKTGKAVTFFTGENHEKSLAGEFMRVLRD  562

Query  495  INEALETLMEQAVAAVQKMDQAEYQAKIRDLQQA  528
            +   +   M++    ++K +   Y A  ++   A
Sbjct  563  VGAEIPKEMDRFPTTIKKKEHGSYGAFYKETSNA  596


>sp|Q81IT9|CSHA_BACCR DEAD-box ATP-dependent RNA helicase CshA 
OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 
/ JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711) 
OX=226900 GN=cshA PE=2 SV=2
Length=533

 Score = 45.4 bits (106),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 95/208 (46%), Gaps = 34/208 (16%)

Query  347  ENPKLEMLEKILQRQFSSSNSPR-GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
            E  K ++L ++L  Q     SP   I+F RT++                 VD  ++ L  
Sbjct  224  EKKKFDVLTRLLDIQ-----SPELAIVFGRTKRR----------------VDELSEALNL  262

Query  406  AGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI  463
             G +++  H  +TQ  +  V++KF++G++ +LVAT VA  GLDI     V  + +  +  
Sbjct  263  RGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPE  322

Query  464  SMVQARGR-ARADQSVYA--FVATEGSRELK------RELINEALETLMEQAVAAVQKMD  514
            S V   GR  RA +   A  FV    S +LK      +  ++      +++A+   Q++ 
Sbjct  323  SYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLI  382

Query  515  QAEYQAKIRDLQQAALTKRAAQAAQREN  542
              + Q+ I + +  A  KR A+    EN
Sbjct  383  AEKLQSTIEN-ENLAYYKRIAEEMLEEN  409


>sp|Q2H1Q8|RRP3_CHAGB ATP-dependent rRNA helicase RRP3 OS=Chaetomium 
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / 
NBRC 6347 / NRRL 1970) OX=306901 GN=RRP3 PE=3 SV=1
Length=493

 Score = 45.1 bits (105),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 15/112 (13%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            IIFTRT      + + L+               +G G       ++Q  +   + KF+ G
Sbjct  309  IIFTRTVIETQRIAILLRT--------------LGMGAIPLHGGLSQSARLGALNKFRAG  354

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF  481
            + ++LVAT VA  GLDIP+ + V+   L  +  + V   GR ARA +S +A 
Sbjct  355  SRDILVATDVAARGLDIPNVDCVLNLDLPGDSKTYVHRVGRTARAGRSGHAI  406


>sp|Q6BPT8|DBP6_DEBHA ATP-dependent RNA helicase DBP6 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / 
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DBP6 PE=3 SV=2
Length=576

 Score = 45.4 bits (106),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 35/130 (27%), Positives = 63/130 (48%), Gaps = 9/130 (7%)

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
            ST+ T   + ++++ F   T+N+LVAT +   G+DI     V+ Y L  +    V   GR
Sbjct  446  STNNTTSVRSKILKDFSKQTINILVATDLIARGIDILSITDVINYDLPNSSREYVHRVGR  505

Query  472  -ARADQSVYAFVATEGSRELK--RELINEA------LETLMEQAVAAVQKMDQAEYQAKI  522
             ARA+Q  +A+    G  E K  ++L+ +       +E L       ++  D++ Y+  +
Sbjct  506  TARANQEGFAYNFCFGKGEAKWFKKLMAQVGRSEKNIEELELDTKQLIEDNDESMYKESL  565

Query  523  RDLQQAALTK  532
             +LQQ    +
Sbjct  566  DELQQQVFNR  575


>sp|Q9DF36|DD21B_XENLA Nucleolar RNA helicase 2-B OS=Xenopus laevis 
OX=8355 GN=ddx21-b PE=2 SV=2
Length=800

 Score = 45.4 bits (106),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 39/135 (29%), Positives = 65/135 (48%), Gaps = 16/135 (12%)

Query  338  LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD  397
            + HLA     + K  +L  I+Q  +S S+  + IIF  ++  AH L           ++ 
Sbjct  446  VEHLAIECNRSQKAAVLGDIVQ-VYSGSHG-KTIIFCDSKLQAHEL------STNCGSLK  497

Query  398  IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG  457
              A+ L G         + Q++++ V++ F+ GT  +L+AT+VA  GLDIP  ++VV Y 
Sbjct  498  QSAKPLHG--------DLQQKEREVVLKGFRQGTFEVLIATNVAARGLDIPEVDLVVLYS  549

Query  458  LLTNEISMVQARGRA  472
                  + V   GR 
Sbjct  550  APKEADAYVHRSGRT  564


>sp|A0KEG9|RHLB_AERHH ATP-dependent RNA helicase RhlB OS=Aeromonas 
hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 
/ BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB 
9240 / NCTC 8049) OX=380703 GN=rhlB PE=3 SV=1
Length=429

 Score = 45.1 bits (105),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 49/110 (45%), Gaps = 15/110 (14%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            + I+F  T+     +  WL+          R  LL G         + Q+ + ++++ F 
Sbjct  258  KAIVFANTKHVCEDVHAWLENDGH------RVGLLTG--------DVPQKKRMKILEDFT  303

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQS  477
             GT+++LVAT VA  GL IP    V  Y L  +    V   GR  RA +S
Sbjct  304  KGTVDILVATDVAARGLHIPDVTHVFNYDLPDDAEDYVHRIGRTGRAGKS  353


>sp|Q4TVV3|DDX46_DANRE Probable ATP-dependent RNA helicase DDX46 
OS=Danio rerio OX=7955 GN=ddx46 PE=2 SV=1
Length=1018

 Score = 45.4 bits (106),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 37/113 (33%), Positives = 55/113 (49%), Gaps = 7/113 (6%)

Query  378  QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLL  435
            Q   S+++++ +Q+     D   + L+ A     S H  + Q D+  +I  F++G   LL
Sbjct  585  QEKGSVIIFVDKQE---HADGLLKDLMKASYPCMSLHGGIDQYDRDSIINDFKNGACRLL  641

Query  436  VATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFV-ATEG  486
            VATSVA  GLD+    +VV Y    +    V   GR  RA    YA+   TEG
Sbjct  642  VATSVAARGLDVKQLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEG  694


>sp|A7TS37|RRP3_VANPO ATP-dependent rRNA helicase RRP3 OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 
21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=RRP3 PE=3 SV=1
Length=506

 Score = 45.1 bits (105),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 15/108 (14%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            I+FTRT+ +A  +            ++  A  L G  N +Q T          +  F+ G
Sbjct  330  IVFTRTKANAERITTLAN------LLEFSATALHGDLNQNQRTGS--------LDLFKAG  375

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQS  477
              ++LVAT VA  GLDIP  ++V+ Y +  +  S +   GR ARA +S
Sbjct  376  RRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRS  423


>sp|P34580|DDX47_CAEEL Putative ATP-dependent RNA helicase T26G10.1 
OS=Caenorhabditis elegans OX=6239 GN=T26G10.1 PE=3 SV=1
Length=489

 Score = 45.1 bits (105),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 15/112 (13%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            I+F  T  +   + + L+Q  G+Q V +  Q             M+Q  +   + KF+  
Sbjct  287  IVFCATCATTMQIAVMLRQL-GMQAVPLHGQ-------------MSQEKRLGSLNKFKSK  332

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF  481
               +LV T VA  GLDIPH ++V+ Y + +     V   GR ARA +S  A 
Sbjct  333  AREILVCTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGIAI  384


>sp|Q7SBC6|DBP2_NEUCR ATP-dependent RNA helicase dbp2 OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / 
DSM 1257 / FGSC 987) OX=367110 GN=drh-1 PE=3 SV=2
Length=562

 Score = 45.1 bits (105),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 72/148 (49%), Gaps = 21/148 (14%)

Query  351  LEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSS  410
            ++ LEKI++      N  + +IFT T++ A  +  +L+Q  G   + I        G+  
Sbjct  368  IKHLEKIME---GRENQNKILIFTGTKRVADDITRFLRQD-GWPALSIH-------GDKQ  416

Query  411  QSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE---ISMVQ  467
            Q+    +RD   V+ +F+ G   ++VAT VA  G+D+ +   V+ Y    N    I  + 
Sbjct  417  QN----ERDW--VLDQFKTGKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIG  470

Query  468  ARGRARADQSVYAFVATEGSRELKRELI  495
              GRA A  +   F  T+ S++  REL+
Sbjct  471  RTGRAGAKGTAITFFTTDNSKQ-ARELV  497


>sp|Q6HPE6|CSHA_BACHK DEAD-box ATP-dependent RNA helicase CshA 
OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) OX=281309 
GN=cshA PE=3 SV=1
Length=528

 Score = 45.1 bits (105),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 95/208 (46%), Gaps = 34/208 (16%)

Query  347  ENPKLEMLEKILQRQFSSSNSPR-GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
            E  K ++L ++L  Q     SP   I+F RT++                 VD  ++ L  
Sbjct  224  EKKKFDVLTRLLDIQ-----SPELAIVFGRTKRR----------------VDELSEALNL  262

Query  406  AGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI  463
             G +++  H  +TQ  +  V++KF++G++ +LVAT VA  GLDI     V  + +  +  
Sbjct  263  RGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPE  322

Query  464  SMVQARGR-ARADQSVYA--FVATEGSRELK------RELINEALETLMEQAVAAVQKMD  514
            S V   GR  RA +   A  FV    S +LK      +  ++      +++A+   Q++ 
Sbjct  323  SYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLI  382

Query  515  QAEYQAKIRDLQQAALTKRAAQAAQREN  542
              + Q+ I + +  A  KR A+    EN
Sbjct  383  AEKLQSTIEN-ENLAYYKRIAEEMLEEN  409


>sp|Q81VG0|CSHA_BACAN DEAD-box ATP-dependent RNA helicase CshA 
OS=Bacillus anthracis OX=1392 GN=cshA PE=3 SV=1
Length=528

 Score = 45.1 bits (105),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 95/208 (46%), Gaps = 34/208 (16%)

Query  347  ENPKLEMLEKILQRQFSSSNSPR-GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
            E  K ++L ++L  Q     SP   I+F RT++                 VD  ++ L  
Sbjct  224  EKKKFDVLTRLLDIQ-----SPELAIVFGRTKRR----------------VDELSEALNL  262

Query  406  AGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI  463
             G +++  H  +TQ  +  V++KF++G++ +LVAT VA  GLDI     V  + +  +  
Sbjct  263  RGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPE  322

Query  464  SMVQARGR-ARADQSVYA--FVATEGSRELK------RELINEALETLMEQAVAAVQKMD  514
            S V   GR  RA +   A  FV    S +LK      +  ++      +++A+   Q++ 
Sbjct  323  SYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLI  382

Query  515  QAEYQAKIRDLQQAALTKRAAQAAQREN  542
              + Q+ I + +  A  KR A+    EN
Sbjct  383  AEKLQSTIEN-ENLAYYKRIAEEMLEEN  409


>sp|A0R8U6|CSHA_BACAH DEAD-box ATP-dependent RNA helicase CshA 
OS=Bacillus thuringiensis (strain Al Hakam) OX=412694 GN=cshA 
PE=3 SV=1
Length=528

 Score = 45.1 bits (105),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 95/208 (46%), Gaps = 34/208 (16%)

Query  347  ENPKLEMLEKILQRQFSSSNSPR-GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
            E  K ++L ++L  Q     SP   I+F RT++                 VD  ++ L  
Sbjct  224  EKKKFDVLTRLLDIQ-----SPELAIVFGRTKRR----------------VDELSEALNL  262

Query  406  AGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI  463
             G +++  H  +TQ  +  V++KF++G++ +LVAT VA  GLDI     V  + +  +  
Sbjct  263  RGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPE  322

Query  464  SMVQARGR-ARADQSVYA--FVATEGSRELK------RELINEALETLMEQAVAAVQKMD  514
            S V   GR  RA +   A  FV    S +LK      +  ++      +++A+   Q++ 
Sbjct  323  SYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLI  382

Query  515  QAEYQAKIRDLQQAALTKRAAQAAQREN  542
              + Q+ I + +  A  KR A+    EN
Sbjct  383  AEKLQSTIEN-ENLAYYKRIAEEMLEEN  409


>sp|P0CQ78|DBP3_CRYNJ ATP-dependent RNA helicase DBP3 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=DBP3 PE=3 SV=1
Length=605

 Score = 45.1 bits (105),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 41/154 (27%), Positives = 69/154 (45%), Gaps = 14/154 (9%)

Query  385  LWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEG  444
            L+ ++ Q L+    RA   +GA +      MTQ  + + ++ F+ G  N+LVAT VA  G
Sbjct  447  LYKKEAQRLEYTIRRAGYAVGALHGD----MTQEARFKALEAFKTGQQNVLVATDVAARG  502

Query  445  LDIPHCNVV--VRYGLLTNEISMVQAR-GRA-RADQSVYAFVATEGSRELKREL------  494
            LDIP   +V  V + L T +      R GRA +  ++V  F      + L  E       
Sbjct  503  LDIPDVGLVINVTFPLTTEDFVHRCGRTGRAGKTGKAVTFFTGENHEKSLAGEFMRVLRD  562

Query  495  INEALETLMEQAVAAVQKMDQAEYQAKIRDLQQA  528
            +   +   M++    ++K +   Y A  ++   A
Sbjct  563  VGAEIPKEMDRFPTTIKKKEHGSYGAFYKETTNA  596


>sp|Q68XG5|UVRB_RICTY UvrABC system protein B OS=Rickettsia typhi 
(strain ATCC VR-144 / Wilmington) OX=257363 GN=uvrB PE=3 
SV=1
Length=662

 Score = 45.1 bits (105),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 19/56 (34%), Positives = 35/56 (63%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+++  + G +++LV  ++  EG+DIP C +V      + G L +E+S++Q  GRA
Sbjct  486  EILRDLRQGNIDILVGINLLREGIDIPECGLVAILDADKEGFLRSEVSLIQTIGRA  541


>sp|A3LQ01|DED1_PICST ATP-dependent RNA helicase DED1 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=DED1 PE=3 SV=3
Length=647

 Score = 45.1 bits (105),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 56/120 (47%), Gaps = 14/120 (12%)

Query  352  EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ  411
            E  + +L    S+ ++   IIFT T++ A +L  +L  Q G     I             
Sbjct  410  EEKKSVLLDLLSAGDAGLTIIFTETKRMADNLADFLYDQ-GFPATAIHGD----------  458

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
                +Q ++++ +  F+ G   +LVAT+VA  GLDIP+   V+ Y L ++    V   GR
Sbjct  459  ---RSQYEREKALAAFKSGAAPILVATAVAARGLDIPNVAHVINYDLPSDIDDYVHRIGR  515


>sp|P24783|DBP2_YEAST ATP-dependent RNA helicase DBP2 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DBP2 
PE=1 SV=1
Length=546

 Score = 45.1 bits (105),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 27/83 (33%), Positives = 48/83 (58%), Gaps = 4/83 (5%)

Query  417  QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY---GLLTNEISMVQARGRAR  473
            QR++  V+Q+F++G   ++VAT VA  G+D+   N V+ Y   G + + +  +   GRA 
Sbjct  396  QRERDWVLQEFRNGRSPIMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAG  455

Query  474  ADQSVYAFVATEGSRELKRELIN  496
            A  +  +F  TE ++ L  +LI+
Sbjct  456  ATGTAISFF-TEQNKGLGAKLIS  477


>sp|Q75B50|DED1_EREGS ATP-dependent RNA helicase DED1 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=DED1 PE=3 SV=2
Length=623

 Score = 45.1 bits (105),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 46/84 (55%), Gaps = 4/84 (5%)

Query  416  TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGRA  472
            TQ +++  +  F+ G  N+LVAT+VA  GLDIP+   V+ Y L   + + +  +   GRA
Sbjct  437  TQAERERALAFFRTGRANVLVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRA  496

Query  473  RADQSVYAFVATEGSRELKRELIN  496
                   AF    G++ + +EL++
Sbjct  497  GNTGLATAFF-NRGNKNVVKELVD  519


>sp|A6ZRX0|DBP2_YEAS7 ATP-dependent RNA helicase DBP2 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=DBP2 PE=3 SV=1
Length=546

 Score = 45.1 bits (105),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 27/83 (33%), Positives = 48/83 (58%), Gaps = 4/83 (5%)

Query  417  QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY---GLLTNEISMVQARGRAR  473
            QR++  V+Q+F++G   ++VAT VA  G+D+   N V+ Y   G + + +  +   GRA 
Sbjct  396  QRERDWVLQEFRNGRSPIMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAG  455

Query  474  ADQSVYAFVATEGSRELKRELIN  496
            A  +  +F  TE ++ L  +LI+
Sbjct  456  ATGTAISFF-TEQNKGLGAKLIS  477


>sp|Q59W52|PRP28_CANAL Pre-mRNA-splicing ATP-dependent RNA helicase 
PRP28 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) 
OX=237561 GN=PRP28 PE=3 SV=2
Length=581

 Score = 45.1 bits (105),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 17/160 (11%)

Query  331  FDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQ  390
             D+       L++   E  K   L KI++  +  + +P  IIF   +    SL       
Sbjct  405  LDNISQSFEFLSSATTEATKFNKLIKIIRSHWRVTENPLIIIFANFKHVCDSL------S  458

Query  391  QGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHC  450
            Q L + DI   ++ G    S+S  M    +++ I  F++    +L+AT VA  G+DIP+ 
Sbjct  459  QELSSNDINNVVIHG----SKSQDM----REQAITNFRNHESEVLIATDVAARGIDIPNV  510

Query  451  NVVVRYGLLTN---EISMVQARGRARADQSVYAFVATEGS  487
             +V+ Y ++      I  +   GRA      + F++ + +
Sbjct  511  TLVINYQMVKKFDEYIHRIGRTGRAGNLGESFTFISDQDT  550


>sp|Q63GX5|CSHA_BACCZ DEAD-box ATP-dependent RNA helicase CshA 
OS=Bacillus cereus (strain ZK / E33L) OX=288681 GN=cshA PE=3 
SV=1
Length=528

 Score = 44.7 bits (104),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 95/208 (46%), Gaps = 34/208 (16%)

Query  347  ENPKLEMLEKILQRQFSSSNSPR-GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
            E  K ++L ++L  Q     SP   I+F RT++                 VD  ++ L  
Sbjct  224  EKKKFDVLTRLLDIQ-----SPELAIVFGRTKRR----------------VDELSEALNL  262

Query  406  AGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI  463
             G +++  H  +TQ  +  V++KF++G++ +LVAT VA  GLDI     V  + +  +  
Sbjct  263  RGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPE  322

Query  464  SMVQARGR-ARADQSVYA--FVATEGSRELK------RELINEALETLMEQAVAAVQKMD  514
            S V   GR  RA +   A  FV    S +LK      +  ++      +++A+   Q++ 
Sbjct  323  SYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLI  382

Query  515  QAEYQAKIRDLQQAALTKRAAQAAQREN  542
              + Q+ I + +  A  KR A+    EN
Sbjct  383  AEKLQSTIEN-ENLAYYKRIAEEMLEEN  409


>sp|Q465R3|HELS_METBF ATP-dependent DNA helicase Hel308 OS=Methanosarcina 
barkeri (strain Fusaro / DSM 804) OX=269797 GN=hel308 
PE=3 SV=1
Length=729

 Score = 45.1 bits (105),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 47/176 (27%), Positives = 79/176 (45%), Gaps = 20/176 (11%)

Query  1    MELRSYQWEVIMPAL-EGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHL  59
            MEL   Q E +   L EG+N++  +PT +GKT  A     + +  + G K + +V    L
Sbjct  22   MELYPPQAEAVEKGLLEGRNLLAAIPTASGKTLLAELAMLKSI--LAGGKALYIVPLRAL  79

Query  60   VTQHGEEFRRMLDGRWTVTTLSGDMGPR-AGFGHLARCHDLLICTAELLQMALTSPEEEE  118
             ++    FR   +    V   +GD   R  G G     +D+++ T+E     L +    E
Sbjct  80   ASEKFRRFREFSELGIRVGISTGDYDLRDEGLG----VNDIIVATSEKTDSLLRN----E  131

Query  119  HVELTVFSLIVVDECH---HTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPG  171
             V +   S++V DE H      +     V ++     KL++  P  Q+L L+A+ G
Sbjct  132  TVWMQEISVVVADEVHLIDSPDRGPTLEVTLA-----KLRKMNPSCQILALSATVG  182


>sp|Q0I1X0|RHLB_HISS1 ATP-dependent RNA helicase RhlB OS=Histophilus 
somni (strain 129Pt) OX=205914 GN=rhlB PE=3 SV=1
Length=419

 Score = 44.7 bits (104),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 87/203 (43%), Gaps = 32/203 (16%)

Query  346  PEN-PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI  404
            P N  K+ +L  +L+ ++      R IIF+ T+     +  +L           R  LL 
Sbjct  236  PSNQDKMALLMTLLEEEWPE----RCIIFSNTKHRCEEIWGYLSADGH------RVGLLT  285

Query  405  GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
            G         + Q+ +  ++++F DGTL++LVAT VA  GL IP    V  Y L  +   
Sbjct  286  G--------DVMQKKRLSLLKQFTDGTLDILVATDVAARGLHIPDVTHVFNYDLPDDCED  337

Query  465  MVQARGR-ARADQS--VYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK  521
             V   GR  RA +S    +F   E +  L       A+E  +  ++     + Q + +A 
Sbjct  338  YVHRIGRTGRAGESGISISFACEEYAINLP------AIEEYIGHSIP----VSQYDAKAL  387

Query  522  IRDLQQAALTKRAAQAAQRENQR  544
            I DL      KR A  ++   QR
Sbjct  388  IEDLPTPHRIKRGAFDSRSNLQR  410


>sp|Q8CMT1|MFD_STAES Transcription-repair-coupling factor OS=Staphylococcus 
epidermidis (strain ATCC 12228 / FDA PCI 1200) 
OX=176280 GN=mfd PE=3 SV=1
Length=1169

 Score = 45.1 bits (105),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 30/97 (31%), Positives = 52/97 (54%), Gaps = 11/97 (11%)

Query  414  HMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQA  468
             MT+RD +E +  F +   ++LV T++ E G+D+P+ N ++     R+GL      + Q 
Sbjct  863  QMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIEEADRFGLS----QLYQL  918

Query  469  RGR-ARADQSVYAFVATEGSRELKRELINEALETLME  504
            RGR  R+ +  YA+     ++ L  E   E L+T+ E
Sbjct  919  RGRVGRSSRIGYAYFLHPANKVLN-ETAEERLQTIKE  954


>sp|P16381|DDX3L_MOUSE Putative ATP-dependent RNA helicase Pl10 
OS=Mus musculus OX=10090 GN=D1Pas1 PE=1 SV=1
Length=660

 Score = 44.7 bits (104),  Expect = 0.003, Method: Compositional matrix adjust.
 Identities = 27/91 (30%), Positives = 51/91 (56%), Gaps = 5/91 (5%)

Query  383  LLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSV  440
            +L++++ ++G  +++     L   G +  S H   +QRD++E + +F+ G   +LVAT+V
Sbjct  443  ILVFVETKKGADSLE---DFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAV  499

Query  441  AEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
            A  GLDI +   V+ + L ++    V   GR
Sbjct  500  AARGLDISNVKHVINFDLPSDIEEYVHRIGR  530


>sp|Q7SEL0|PRP28_NEUCR Pre-mRNA-splicing ATP-dependent RNA helicase 
prp-28 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A 
/ CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=prp-28 
PE=3 SV=1
Length=728

 Score = 44.7 bits (104),  Expect = 0.003, Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 48/89 (54%), Gaps = 3/89 (3%)

Query  397  DIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV  454
            D+ A+ + G G S+ + H   TQ  ++  +   ++G  ++LVAT +A  G+D+P  ++VV
Sbjct  580  DMVARDIKGMGYSAVTLHGSKTQEQREAALASLRNGQTDILVATDLAGRGIDVPDVSLVV  639

Query  455  RYGLLTNEISMVQARGR-ARADQSVYAFV  482
             + + TN  S     GR  RA +S  A  
Sbjct  640  NFNMATNIESYTHRIGRTGRAGKSGVAIT  668


>sp|Q6FLF3|DBP2_CANGA ATP-dependent RNA helicase DBP2 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DBP2 PE=3 SV=1
Length=544

 Score = 44.7 bits (104),  Expect = 0.003, Method: Compositional matrix adjust.
 Identities = 30/95 (32%), Positives = 51/95 (54%), Gaps = 7/95 (7%)

Query  417  QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY---GLLTNEISMVQARGRAR  473
            QR++  V+ +F+ G   ++VAT VA  G+D+   N VV Y   G + + +  +   GRA 
Sbjct  393  QRERDWVLNEFRTGNSPIMVATDVAARGIDVKGINFVVNYDMPGNIEDYVHRIGRTGRAG  452

Query  474  ADQSVYAFVATEGSRELKRELIN---EALETLMEQ  505
            A  +  +F  TE ++ L   LI+   EA + + E+
Sbjct  453  ATGTAISFF-TEDNKSLGASLISIMREAKQNIPEE  486


>sp|B0UUZ9|RHLB_HISS2 ATP-dependent RNA helicase RhlB OS=Histophilus 
somni (strain 2336) OX=228400 GN=rhlB PE=3 SV=1
Length=419

 Score = 44.3 bits (103),  Expect = 0.003, Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 87/203 (43%), Gaps = 32/203 (16%)

Query  346  PEN-PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI  404
            P N  K+ +L  +L+ ++      R IIF+ T+     +  +L           R  LL 
Sbjct  236  PSNQDKMALLMTLLEEEWPE----RCIIFSNTKHRCEEIWGYLSADGH------RVGLLT  285

Query  405  GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
            G         + Q+ +  ++++F DGTL++LVAT VA  GL IP    V  Y L  +   
Sbjct  286  G--------DVMQKKRLSLLKQFTDGTLDVLVATDVAARGLHIPDVTHVFNYDLPDDCED  337

Query  465  MVQARGR-ARADQS--VYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK  521
             V   GR  RA +S    +F   E +  L       A+E  +  ++     + Q + +A 
Sbjct  338  YVHRIGRTGRAGESGISISFACEEYAINLP------AIEEYIGHSIP----VSQYDAKAL  387

Query  522  IRDLQQAALTKRAAQAAQRENQR  544
            I DL      KR A  ++   QR
Sbjct  388  IEDLPTPHRIKRGAFDSRSNLQR  410


>sp|Q5AWA6|DBP3_EMENI ATP-dependent RNA helicase dbp3 OS=Emericella 
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 
194 / M139) OX=227321 GN=dbp3 PE=3 SV=2
Length=488

 Score = 44.3 bits (103),  Expect = 0.003, Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 58/122 (48%), Gaps = 12/122 (10%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL-LTNE--ISMVQARGR  471
            ++Q+++   ++ F+ G   +LVAT VA  GLDIPH  +VV     LT E  +  +   GR
Sbjct  357  LSQQERFRSLEAFKSGAATVLVATDVAARGLDIPHVKLVVNVTFPLTVEDYVHRIGRTGR  416

Query  472  ARADQSVYAFVATEGSRELKRELIN-------EALETLMEQAVAAVQKMDQAEYQAKIRD  524
            A AD        TE  +     LIN       E  E L++   + V+K     Y A  +D
Sbjct  417  AGADGHAITLF-TETDKAQSGALINVLKAANQEVPEALLKFG-STVKKKQHDAYGAFFKD  474

Query  525  LQ  526
            ++
Sbjct  475  VE  476


>sp|Q9P7C7|PRP11_SCHPO Pre-mRNA-processing ATP-dependent RNA helicase 
prp11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 
24843) OX=284812 GN=prp11 PE=1 SV=1
Length=1014

 Score = 44.7 bits (104),  Expect = 0.003, Method: Compositional matrix adjust.
 Identities = 43/190 (23%), Positives = 81/190 (43%), Gaps = 30/190 (16%)

Query  336  NELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQT  395
            +E+  +    PE  K   L ++L   +++    R ++F   ++SA +LL  L ++     
Sbjct  637  SEVEQIVEVRPEESKFSRLLELLGELYNNQLDVRTLVFVDRQESADALLSDLMKR-----  691

Query  396  VDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV  453
                       G +S S H    Q D+   I  ++ G  ++L+ATSV   GLD+    +V
Sbjct  692  -----------GYTSNSIHGGKDQHDRDSTISDYKAGVFDVLIATSVVARGLDVKSLQLV  740

Query  454  VRYGL---LTNEISMVQARGRARADQSVYAFVATEGSR---------ELKRELINEALET  501
            V Y     + + +  V   GRA        F+  E  +         ++ ++ + + L+T
Sbjct  741  VNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFITPEQEKYAVDIAKALKMSKQPVPKELQT  800

Query  502  LMEQAVAAVQ  511
            L  Q +  V+
Sbjct  801  LASQFLEKVK  810


>sp|Q6DRI7|DDX51_DANRE ATP-dependent RNA helicase DDX51 OS=Danio 
rerio OX=7955 GN=ddx51 PE=2 SV=1
Length=652

 Score = 44.7 bits (104),  Expect = 0.003, Method: Compositional matrix adjust.
 Identities = 34/132 (26%), Positives = 64/132 (48%), Gaps = 19/132 (14%)

Query  351  LEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSS  410
            L +L  +L+ +FS +     + FT +R+ AH L L ++   G++  +  ++L  G     
Sbjct  479  LIILHFLLRLKFSPA-----LCFTNSREGAHRLYLLVKLFGGVEVAEFSSKLSPG-----  528

Query  411  QSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARG  470
                    ++Q+ ++ F+ G + LL++T  A  G+DI     V+ Y       + +   G
Sbjct  529  --------ERQKTLKDFEKGKIPLLISTDAAARGIDINGVKCVINYDAPQYIRTYIHRVG  580

Query  471  R-ARADQSVYAF  481
            R ARA ++  AF
Sbjct  581  RTARAGKAGLAF  592


>sp|Q4PFD9|PRP5_USTMA Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Ustilago maydis (strain 521 / FGSC 9021) OX=237631 
GN=PRP5 PE=3 SV=1
Length=1156

 Score = 44.7 bits (104),  Expect = 0.003, Method: Compositional matrix adjust.
 Identities = 43/154 (28%), Positives = 67/154 (44%), Gaps = 22/154 (14%)

Query  347  ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA  406
            E+ K   L +IL   ++     R +IF   +++A  LL                + LI  
Sbjct  707  EDTKFHRLLEILGELYNREKDARTLIFVDRQEAADDLL----------------KDLIRK  750

Query  407  GNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
            G  + S H    Q D+ E I  F+ G + ++ ATSVA  GLD+    +V+ Y +  +   
Sbjct  751  GYVTMSLHGGKDQVDRDETISDFKAGNVPIVTATSVAARGLDVKQLKLVINYDVPNHMED  810

Query  465  MVQARGR-ARADQ--SVYAFVATEGSRELKRELI  495
             V   GR  RA Q  +   F+  E  R   R++I
Sbjct  811  YVHRAGRTGRAGQKGTCITFITPEQDR-YARDII  843


>sp|C3LQR1|RHLB_VIBCM ATP-dependent RNA helicase RhlB OS=Vibrio 
cholerae serotype O1 (strain M66-2) OX=579112 GN=rhlB PE=3 
SV=1
Length=438

 Score = 44.3 bits (103),  Expect = 0.003, Method: Compositional matrix adjust.
 Identities = 40/161 (25%), Positives = 71/161 (44%), Gaps = 27/161 (17%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +++ ++      R IIF  T+     +  W      L   + R  LL G    
Sbjct  243  KMALLQTLIEEEWPD----RAIIFANTKHRCEQI--WAH----LAADNHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMV  466
                 + Q+ ++ ++++F  G +++LVAT VA  GL IP    V  Y L     + +  +
Sbjct  289  ----DVPQKKRERILEQFTQGDVDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRI  344

Query  467  QARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAV  507
               GRA A     +F   E +  L       A+E+ +E A+
Sbjct  345  GRTGRAGASGHSISFACEEYAINLP------AIESYIEHAI  379


>sp|Q9KV52|RHLB_VIBCH ATP-dependent RNA helicase RhlB OS=Vibrio 
cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) 
OX=243277 GN=rhlB PE=3 SV=1
Length=438

 Score = 44.3 bits (103),  Expect = 0.003, Method: Compositional matrix adjust.
 Identities = 40/161 (25%), Positives = 71/161 (44%), Gaps = 27/161 (17%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +++ ++      R IIF  T+     +  W      L   + R  LL G    
Sbjct  243  KMALLQTLIEEEWPD----RAIIFANTKHRCEQI--WAH----LAADNHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMV  466
                 + Q+ ++ ++++F  G +++LVAT VA  GL IP    V  Y L     + +  +
Sbjct  289  ----DVPQKKRERILEQFTQGDVDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRI  344

Query  467  QARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAV  507
               GRA A     +F   E +  L       A+E+ +E A+
Sbjct  345  GRTGRAGASGHSISFACEEYAINLP------AIESYIEHAI  379


>sp|A5F3R4|RHLB_VIBC3 ATP-dependent RNA helicase RhlB OS=Vibrio 
cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 
395 / O395) OX=345073 GN=rhlB PE=3 SV=1
Length=438

 Score = 44.3 bits (103),  Expect = 0.003, Method: Compositional matrix adjust.
 Identities = 40/161 (25%), Positives = 71/161 (44%), Gaps = 27/161 (17%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +++ ++      R IIF  T+     +  W      L   + R  LL G    
Sbjct  243  KMALLQTLIEEEWPD----RAIIFANTKHRCEQI--WAH----LAADNHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMV  466
                 + Q+ ++ ++++F  G +++LVAT VA  GL IP    V  Y L     + +  +
Sbjct  289  ----DVPQKKRERILEQFTQGDVDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRI  344

Query  467  QARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAV  507
               GRA A     +F   E +  L       A+E+ +E A+
Sbjct  345  GRTGRAGASGHSISFACEEYAINLP------AIESYIEHAI  379


>sp|Q4X195|DBP2_ASPFU ATP-dependent RNA helicase dbp2 OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 
/ Af293) OX=330879 GN=dbp2 PE=3 SV=2
Length=547

 Score = 44.3 bits (103),  Expect = 0.003, Method: Compositional matrix adjust.
 Identities = 40/150 (27%), Positives = 70/150 (47%), Gaps = 27/150 (18%)

Query  351  LEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSS  410
            ++ LEKI++     + S + +IFT T++ A  +  +L+Q                 G  +
Sbjct  357  IKHLEKIME-----NRSNKCLIFTGTKRIADEITRFLRQD----------------GWPA  395

Query  411  QSTHMTQRDQQE--VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE---ISM  465
             S H  ++ Q+   V+ +F+ G   ++VAT VA  G+D+     V+ Y    N    I  
Sbjct  396  LSIHGDKQQQERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYIHR  455

Query  466  VQARGRARADQSVYAFVATEGSRELKRELI  495
            +   GRA A  +   F  TE S++  R+L+
Sbjct  456  IGRTGRAGAKGTAITFFTTENSKQ-ARDLV  484


>sp|Q7V9M1|UVRB_PROMA UvrABC system protein B OS=Prochlorococcus 
marinus (strain SARG / CCMP1375 / SS120) OX=167539 GN=uvrB 
PE=3 SV=1
Length=677

 Score = 44.7 bits (104),  Expect = 0.003, Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 22/126 (17%)

Query  352  EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ  411
            ++L++I +R   S    R +I T T++ A  L  +L +       D+R + L        
Sbjct  432  DLLDEIRER---SRKKQRVLITTLTKRMAEDLTDYLSEN------DVRVRYL------HS  476

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMV  466
              H  +R   E+IQ  + G  ++LV  ++  EGLD+P  ++VV     + G L  E S++
Sbjct  477  EIHSIER--IEIIQDLRMGEYDVLVGVNLLREGLDLPEVSLVVILDADKEGFLRAERSLI  534

Query  467  QARGRA  472
            Q  GRA
Sbjct  535  QTIGRA  540


>sp|A6VKC3|RHLB_ACTSZ ATP-dependent RNA helicase RhlB OS=Actinobacillus 
succinogenes (strain ATCC 55618 / DSM 22257 / CCUG 
43843 / 130Z) OX=339671 GN=rhlB PE=3 SV=1
Length=413

 Score = 44.3 bits (103),  Expect = 0.003, Method: Compositional matrix adjust.
 Identities = 38/132 (29%), Positives = 59/132 (45%), Gaps = 25/132 (19%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQ---QQQGLQTVDIRAQLLIGA  406
            K+ +L  +L+ ++      R IIF  T+     +  +L    Q+ GL T D+        
Sbjct  241  KMALLMTLLEEEWPE----RCIIFANTKHRCEEIWGYLAADGQRVGLLTGDV--------  288

Query  407  GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV  466
                      Q+ +  ++++F DG L++LVAT VA  GL IP    V  Y L  +    V
Sbjct  289  ---------AQKKRLALLKQFTDGELDILVATDVAARGLHIPDVTHVFNYDLPDDREDYV  339

Query  467  QARGR-ARADQS  477
               GR  RA +S
Sbjct  340  HRIGRTGRAGES  351


>sp|A5DZE6|DED1_LODEL ATP-dependent RNA helicase DED1 OS=Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=DED1 PE=3 SV=1
Length=664

 Score = 44.3 bits (103),  Expect = 0.003, Method: Compositional matrix adjust.
 Identities = 30/101 (30%), Positives = 49/101 (49%), Gaps = 14/101 (14%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            I+FT T++ A +L  +L  Q G     I                 +Q ++++ +  F+ G
Sbjct  436  IVFTETKRMADNLADFLYDQ-GFPATAIHGD-------------RSQYEREKALAAFKSG  481

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
               +LVAT+VA  GLDIP+ + V+ Y L ++    V   GR
Sbjct  482  QAPILVATAVAARGLDIPNVSHVINYDLPSDIDDYVHRIGR  522


>sp|Q7A801|HSDR_STAAN Type I restriction enzyme SauN315I endonuclease 
subunit OS=Staphylococcus aureus (strain N315) OX=158879 
GN=hsdR PE=1 SV=1
Length=929

 Score = 44.7 bits (104),  Expect = 0.003, Method: Compositional matrix adjust.
 Identities = 43/188 (23%), Positives = 75/188 (40%), Gaps = 24/188 (13%)

Query  1    MELRSYQWEVIMPALE-----GKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVN  55
            M +R YQ   +   ++     G N  +W  TG+GKT  +   ++   +  D  KV+ LV+
Sbjct  239  MAMRPYQVYAVEALIQQATETGNNGYVWHTTGSGKTLTSFKASQILSQQDDIKKVIFLVD  298

Query  56   RVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE  115
            R  L +Q  EEF +   G    T  +  +  +     L     L++ T + +  A+    
Sbjct  299  RKDLDSQTEEEFNKFAKGAVDKTFNTSQLVRQLNDKSLP----LIVTTIQKMAKAIQGNA  354

Query  116  ---EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGT  172
               E+      VF   ++DECH +    ++ ++   +            Q  G T +P  
Sbjct  355  HLLEQYKTNKVVF---IIDECHRSQFGDMHRLVKQHFKN---------AQYFGFTGTPRF  402

Query  173  GGASKLDG  180
               S  DG
Sbjct  403  PENSSQDG  410


>sp|Q99X26|HSDR_STAAM Type I restriction enzyme SauMu50ORF195P 
endonuclease subunit OS=Staphylococcus aureus (strain Mu50 
/ ATCC 700699) OX=158878 GN=hsdR PE=3 SV=1
Length=929

 Score = 44.7 bits (104),  Expect = 0.003, Method: Compositional matrix adjust.
 Identities = 43/188 (23%), Positives = 75/188 (40%), Gaps = 24/188 (13%)

Query  1    MELRSYQWEVIMPALE-----GKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVN  55
            M +R YQ   +   ++     G N  +W  TG+GKT  +   ++   +  D  KV+ LV+
Sbjct  239  MAMRPYQVYAVEALIQQATETGNNGYVWHTTGSGKTLTSFKASQILSQQDDIKKVIFLVD  298

Query  56   RVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE  115
            R  L +Q  EEF +   G    T  +  +  +     L     L++ T + +  A+    
Sbjct  299  RKDLDSQTEEEFNKFAKGAVDKTFNTSQLVRQLNDKSLP----LIVTTIQKMAKAIQGNA  354

Query  116  ---EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGT  172
               E+      VF   ++DECH +    ++ ++   +            Q  G T +P  
Sbjct  355  HLLEQYKTNKVVF---IIDECHRSQFGDMHRLVKQHFKN---------AQYFGFTGTPRF  402

Query  173  GGASKLDG  180
               S  DG
Sbjct  403  PENSSQDG  410


>sp|A5UNK6|UVRB_METS3 UvrABC system protein B OS=Methanobrevibacter 
smithii (strain ATCC 35061 / DSM 861 / OCM 144 / PS) OX=420247 
GN=uvrB PE=3 SV=1
Length=655

 Score = 44.3 bits (103),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 52/108 (48%), Gaps = 7/108 (6%)

Query  370  GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD  429
            G +  R ++    L+  L ++      D  A+  IG       + +   ++ +++   + 
Sbjct  434  GEVKKRAKKDERVLVTTLTKKMAEDLTDYYAK--IGVKVRYMHSEIDTLERIDIVDDLRR  491

Query  430  GTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            GT ++LV  ++  EGLD+P  ++V      + G L NE S++Q  GRA
Sbjct  492  GTFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNETSLIQTIGRA  539


>sp|Q5QMN3|RH20_ORYSJ DEAD-box ATP-dependent RNA helicase 20 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os01g0197200 PE=3 
SV=2
Length=494

 Score = 44.3 bits (103),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 25/84 (30%), Positives = 42/84 (50%), Gaps = 4/84 (5%)

Query  416  TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY---GLLTNEISMVQARGRA  472
            +Q ++  V+ +F+ G   ++ AT VA  GLD+     V+ Y   G L + +  +   GRA
Sbjct  371  SQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRA  430

Query  473  RADQSVYAFVATEGSRELKRELIN  496
             A  + Y F     +R   ++LIN
Sbjct  431  GAKGTAYTFFTAANAR-FAKDLIN  453


>sp|A4RGD1|RRP3_PYRO7 ATP-dependent rRNA helicase RRP3 OS=Pyricularia 
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 
GN=RRP3 PE=3 SV=1
Length=538

 Score = 44.3 bits (103),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 23/116 (20%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA----GNSSQSTHMTQRDQQEVIQK  426
            I+FTRT   A  + + L+             L  GA    G  SQS  +        + K
Sbjct  354  IVFTRTVNEAQRVSILLRT------------LSFGAIPLHGQLSQSMRLG------ALNK  395

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF  481
            F+  + ++LVAT VA  GLDIP  ++V+ + +  + ++ +   GR ARA +S  A 
Sbjct  396  FKARSRDILVATDVAARGLDIPEVDLVINFDMPQDSMTYIHRVGRTARAGRSGRAI  451


>sp|Q6C4D4|DBP2_YARLI ATP-dependent RNA helicase DBP2 OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DBP2 PE=3 
SV=1
Length=552

 Score = 44.3 bits (103),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 61/130 (47%), Gaps = 22/130 (17%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE--VIQKFQ  428
            +IFT T++ A  +  +L+Q                 G  + + H  ++ Q+   V+ +F+
Sbjct  367  LIFTGTKRVADDITKFLRQD----------------GWPALAIHGDKQQQERDWVLNEFR  410

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE---ISMVQARGRARADQSVYAFVATE  485
             G   ++VAT VA  G+D+   N V+ Y   +N    +  +   GRA    + Y +  TE
Sbjct  411  QGKSPIMVATDVASRGIDVKGINFVINYDYPSNSEDYVHRIGRTGRAGTKGTAYTYF-TE  469

Query  486  GSRELKRELI  495
             +R+  R+L+
Sbjct  470  DNRKQARDLL  479


>sp|Q5HIH2|MFD_STAAC Transcription-repair-coupling factor OS=Staphylococcus 
aureus (strain COL) OX=93062 GN=mfd PE=3 SV=1
Length=1168

 Score = 44.3 bits (103),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 42/74 (57%), Gaps = 10/74 (14%)

Query  414  HMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQA  468
             MT+RD +E +  F +   ++LV T++ E G+D+P+ N ++     R+GL      + Q 
Sbjct  862  QMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIEDADRFGLS----QLYQL  917

Query  469  RGR-ARADQSVYAF  481
            RGR  R+ +  YA+
Sbjct  918  RGRVGRSSRIGYAY  931


>sp|Q8NXZ6|MFD_STAAW Transcription-repair-coupling factor OS=Staphylococcus 
aureus (strain MW2) OX=196620 GN=mfd PE=3 SV=1
Length=1168

 Score = 44.3 bits (103),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 42/74 (57%), Gaps = 10/74 (14%)

Query  414  HMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQA  468
             MT+RD +E +  F +   ++LV T++ E G+D+P+ N ++     R+GL      + Q 
Sbjct  862  QMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIEDADRFGLS----QLYQL  917

Query  469  RGR-ARADQSVYAF  481
            RGR  R+ +  YA+
Sbjct  918  RGRVGRSSRIGYAY  931


>sp|Q6GBY5|MFD_STAAS Transcription-repair-coupling factor OS=Staphylococcus 
aureus (strain MSSA476) OX=282459 GN=mfd PE=3 
SV=1
Length=1168

 Score = 44.3 bits (103),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 42/74 (57%), Gaps = 10/74 (14%)

Query  414  HMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQA  468
             MT+RD +E +  F +   ++LV T++ E G+D+P+ N ++     R+GL      + Q 
Sbjct  862  QMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIEDADRFGLS----QLYQL  917

Query  469  RGR-ARADQSVYAF  481
            RGR  R+ +  YA+
Sbjct  918  RGRVGRSSRIGYAY  931


>sp|Q2G0R8|MFD_STAA8 Transcription-repair-coupling factor OS=Staphylococcus 
aureus (strain NCTC 8325 / PS 47) OX=93061 GN=mfd 
PE=3 SV=1
Length=1168

 Score = 44.3 bits (103),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 42/74 (57%), Gaps = 10/74 (14%)

Query  414  HMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQA  468
             MT+RD +E +  F +   ++LV T++ E G+D+P+ N ++     R+GL      + Q 
Sbjct  862  QMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIEDADRFGLS----QLYQL  917

Query  469  RGR-ARADQSVYAF  481
            RGR  R+ +  YA+
Sbjct  918  RGRVGRSSRIGYAY  931


>sp|Q2FJD8|MFD_STAA3 Transcription-repair-coupling factor OS=Staphylococcus 
aureus (strain USA300) OX=367830 GN=mfd PE=3 SV=1
Length=1168

 Score = 44.3 bits (103),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 42/74 (57%), Gaps = 10/74 (14%)

Query  414  HMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQA  468
             MT+RD +E +  F +   ++LV T++ E G+D+P+ N ++     R+GL      + Q 
Sbjct  862  QMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIEDADRFGLS----QLYQL  917

Query  469  RGR-ARADQSVYAF  481
            RGR  R+ +  YA+
Sbjct  918  RGRVGRSSRIGYAY  931


>sp|Q6GJG8|MFD_STAAR Transcription-repair-coupling factor OS=Staphylococcus 
aureus (strain MRSA252) OX=282458 GN=mfd PE=3 
SV=1
Length=1168

 Score = 44.3 bits (103),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 42/74 (57%), Gaps = 10/74 (14%)

Query  414  HMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQA  468
             MT+RD +E +  F +   ++LV T++ E G+D+P+ N ++     R+GL      + Q 
Sbjct  862  QMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIEDADRFGLS----QLYQL  917

Query  469  RGR-ARADQSVYAF  481
            RGR  R+ +  YA+
Sbjct  918  RGRVGRSSRIGYAY  931


>sp|Q7A7B2|MFD_STAAN Transcription-repair-coupling factor OS=Staphylococcus 
aureus (strain N315) OX=158879 GN=mfd PE=1 SV=1
Length=1168

 Score = 44.3 bits (103),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 42/74 (57%), Gaps = 10/74 (14%)

Query  414  HMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQA  468
             MT+RD +E +  F +   ++LV T++ E G+D+P+ N ++     R+GL      + Q 
Sbjct  862  QMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIEDADRFGLS----QLYQL  917

Query  469  RGR-ARADQSVYAF  481
            RGR  R+ +  YA+
Sbjct  918  RGRVGRSSRIGYAY  931


>sp|Q99WA0|MFD_STAAM Transcription-repair-coupling factor OS=Staphylococcus 
aureus (strain Mu50 / ATCC 700699) OX=158878 GN=mfd 
PE=3 SV=1
Length=1168

 Score = 44.3 bits (103),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 42/74 (57%), Gaps = 10/74 (14%)

Query  414  HMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQA  468
             MT+RD +E +  F +   ++LV T++ E G+D+P+ N ++     R+GL      + Q 
Sbjct  862  QMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIEDADRFGLS----QLYQL  917

Query  469  RGR-ARADQSVYAF  481
            RGR  R+ +  YA+
Sbjct  918  RGRVGRSSRIGYAY  931


>sp|Q8NYL9|HSDR_STAAW Type I restriction enzyme SauMW2ORF169P 
endonuclease subunit OS=Staphylococcus aureus (strain MW2) OX=196620 
GN=hsdR PE=3 SV=1
Length=929

 Score = 44.3 bits (103),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 43/188 (23%), Positives = 75/188 (40%), Gaps = 24/188 (13%)

Query  1    MELRSYQWEVIMPALE-----GKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVN  55
            M +R YQ   +   ++     G N  +W  TG+GKT  +   ++   +  D  KV+ LV+
Sbjct  239  MAMRPYQVYAVEALIQQATETGNNGYVWHTTGSGKTLTSFKASQILSQQDDIKKVIFLVD  298

Query  56   RVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE  115
            R  L +Q  EEF +   G    T  +  +  +     L     L++ T + +  A+    
Sbjct  299  RKDLDSQTEEEFNKFAKGAVDKTFNTSQLVRQLNDKSLP----LIVTTIQKMAKAIQGNA  354

Query  116  ---EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGT  172
               E+      VF   ++DECH +    ++ ++   +            Q  G T +P  
Sbjct  355  HLLEQYKTNKVVF---IIDECHRSQFGDMHRLVKQHFKN---------AQYFGFTGTPRF  402

Query  173  GGASKLDG  180
               S  DG
Sbjct  403  PENSSQDG  410


>sp|Q6GCT1|HSDR_STAAS Type I restriction enzyme SauMSSORF170P 
endonuclease subunit OS=Staphylococcus aureus (strain MSSA476) 
OX=282459 GN=hsdR PE=3 SV=1
Length=929

 Score = 44.3 bits (103),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 43/188 (23%), Positives = 75/188 (40%), Gaps = 24/188 (13%)

Query  1    MELRSYQWEVIMPALE-----GKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVN  55
            M +R YQ   +   ++     G N  +W  TG+GKT  +   ++   +  D  KV+ LV+
Sbjct  239  MAMRPYQVYAVEALIQQATETGNNGYVWHTTGSGKTLTSFKASQILSQQDDIKKVIFLVD  298

Query  56   RVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE  115
            R  L +Q  EEF +   G    T  +  +  +     L     L++ T + +  A+    
Sbjct  299  RKDLDSQTEEEFNKFAKGAVDKTFNTSQLVRQLNDKSLP----LIVTTIQKMAKAIQGNA  354

Query  116  ---EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGT  172
               E+      VF   ++DECH +    ++ ++   +            Q  G T +P  
Sbjct  355  HLLEQYKTNKVVF---IIDECHRSQFGDMHRLVKQHFKN---------AQYFGFTGTPRF  402

Query  173  GGASKLDG  180
               S  DG
Sbjct  403  PENSSQDG  410


>sp|Q2YVY2|MFD_STAAB Transcription-repair-coupling factor OS=Staphylococcus 
aureus (strain bovine RF122 / ET3-1) OX=273036 
GN=mfd PE=3 SV=1
Length=1168

 Score = 44.3 bits (103),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 42/74 (57%), Gaps = 10/74 (14%)

Query  414  HMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQA  468
             MT+RD +E +  F +   ++LV T++ E G+D+P+ N ++     R+GL      + Q 
Sbjct  862  QMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIEDADRFGLS----QLYQL  917

Query  469  RGR-ARADQSVYAF  481
            RGR  R+ +  YA+
Sbjct  918  RGRVGRSSRIGYAY  931


>sp|Q6GKB1|HSDR_STAAR Type I restriction enzyme SauMRSORF196P 
endonuclease subunit OS=Staphylococcus aureus (strain MRSA252) 
OX=282458 GN=hsdR PE=3 SV=1
Length=929

 Score = 44.3 bits (103),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 43/188 (23%), Positives = 75/188 (40%), Gaps = 24/188 (13%)

Query  1    MELRSYQWEVIMPALE-----GKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVN  55
            M +R YQ   +   ++     G N  +W  TG+GKT  +   ++   +  D  KV+ LV+
Sbjct  239  MAMRPYQVYAVEALIQQATETGNNGYVWHTTGSGKTLTSFKASQILSQQDDIKKVIFLVD  298

Query  56   RVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE  115
            R  L +Q  EEF +   G    T  +  +  +     L     L++ T + +  A+    
Sbjct  299  RKDLDSQTEEEFNKFAKGAVDKTFNTSQLVRQLNDKSLP----LIVTTIQKMAKAIQGNA  354

Query  116  ---EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGT  172
               E+      VF   ++DECH +    ++ ++   +            Q  G T +P  
Sbjct  355  HLLEQYKTNKVVF---IIDECHRSQFGDMHRLVKQHFKN---------AQYFGFTGTPRF  402

Query  173  GGASKLDG  180
               S  DG
Sbjct  403  PENSSQDG  410


>sp|Q8Y8N0|CSHA_LISMO ATP-dependent RNA helicase CshA OS=Listeria 
monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) 
OX=169963 GN=cshA PE=2 SV=1
Length=520

 Score = 43.9 bits (102),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 62/127 (49%), Gaps = 22/127 (17%)

Query  347  ENPKLEMLEKILQRQFSSSNSPR-GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
            E  K ++L ++L  Q     +P   I+F RT++    L          + +D+R  +  G
Sbjct  224  EKEKFDVLSRLLDVQ-----APELAIVFGRTKRRVDELS---------RALDMRGYVAEG  269

Query  406  A-GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
              G+ +Q+  M+      V++KF++G +++LVAT VA  GLDI     V  Y +  +  S
Sbjct  270  IHGDLTQAKRMS------VLRKFKEGKIDVLVATDVAARGLDISGVTHVYNYDIPQDPES  323

Query  465  MVQARGR  471
             V   GR
Sbjct  324  YVHRIGR  330


>sp|P21693|DBPA_ECOLI ATP-dependent RNA helicase DbpA OS=Escherichia 
coli (strain K12) OX=83333 GN=dbpA PE=1 SV=2
Length=457

 Score = 43.9 bits (102),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 45/84 (54%), Gaps = 5/84 (6%)

Query  407  GNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
            G S+ S H  + QRD+ + + +F +G+  +LVAT VA  GLDI    +VV + L  +   
Sbjct  265  GQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEV  324

Query  465  MVQARGR-ARADQSVYA--FVATE  485
             V   GR ARA  S  A  F A E
Sbjct  325  HVHRIGRTARAGNSGLAISFCAPE  348


>sp|Q8K9H6|DEAD_BUCAP ATP-dependent RNA helicase DeaD OS=Buchnera 
aphidicola subsp. Schizaphis graminum (strain Sg) OX=198804 
GN=deaD PE=3 SV=1
Length=601

 Score = 43.9 bits (102),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 32/108 (30%), Positives = 59/108 (55%), Gaps = 5/108 (5%)

Query  405  GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
            G  +++ +  M Q  +++ +++ + G L++L+AT VA  GLD+   + V+ Y +  +  S
Sbjct  268  GYNSAALNGDMNQALREQTLERLKSGRLDILIATDVAARGLDVDRISFVINYDIPMDSES  327

Query  465  MVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQ  511
             V   GR  RA ++  A +  E +RE +R L N  +E  + Q +  VQ
Sbjct  328  YVHRIGRTGRAGRAGRALLFVE-NRE-RRLLRN--IERTINQTIPEVQ  371


>sp|Q6FQZ0|DBP8_CANGA ATP-dependent RNA helicase DBP8 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DBP8 PE=3 SV=1
Length=437

 Score = 43.9 bits (102),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 65/130 (50%), Gaps = 17/130 (13%)

Query  346  PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
            PE+ K   L ++L  + S +NS   IIF     +A  L      ++ L+ +D+R      
Sbjct  242  PEHVKEAYLYQLLTCE-SYANST-AIIFVNRTTAAEVL------RRTLKALDVRV-----  288

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM  465
               +S  + M Q+++   + +F+     +L+AT VA  GLDIP   +V+ Y + ++  + 
Sbjct  289  ---ASLHSQMPQQERTNSMHRFRANAARVLIATDVASRGLDIPTVELVINYDIPSDPDTF  345

Query  466  VQARGR-ARA  474
            +   GR ARA
Sbjct  346  IHRSGRTARA  355


>sp|Q6BGU8|DBP8_DEBHA ATP-dependent RNA helicase DBP8 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / 
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DBP8 PE=3 SV=2
Length=441

 Score = 43.9 bits (102),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 55/115 (48%), Gaps = 18/115 (16%)

Query  361  QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ  420
            Q+S S S   IIFT    +A  L      ++ L+ ++ R         +S  + M Q ++
Sbjct  250  QYSDSLS---IIFTNRTATAELL------RRTLRKLEFRV--------ASLHSEMPQTER  292

Query  421  QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA  474
               + +F+ G   +L+AT VA  GLDIP   +VV Y +  +    +   GR ARA
Sbjct  293  TNSLHRFKAGAAKILIATDVASRGLDIPTVELVVNYDIPADADDFIHRVGRTARA  347


>sp|Q73EU1|CSHA_BACC1 DEAD-box ATP-dependent RNA helicase CshA 
OS=Bacillus cereus (strain ATCC 10987 / NRS 248) OX=222523 
GN=cshA PE=3 SV=1
Length=525

 Score = 43.9 bits (102),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 45/151 (30%), Positives = 71/151 (47%), Gaps = 27/151 (18%)

Query  347  ENPKLEMLEKILQRQFSSSNSPR-GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
            E  K ++L ++L  Q     SP   I+F RT++                 VD  ++ L  
Sbjct  224  EKKKFDVLTRLLDIQ-----SPELAIVFGRTKRR----------------VDELSEALNL  262

Query  406  AGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI  463
             G +++  H  +TQ  +  V++KF++G++ +LVAT VA  GLDI     V  + +  +  
Sbjct  263  RGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPE  322

Query  464  SMVQARGR-ARADQSVYA--FVATEGSRELK  491
            S V   GR  RA +   A  FV    S +LK
Sbjct  323  SYVHRIGRTGRAGKKGIAMLFVTPRESGQLK  353


>sp|C5CFR8|UVRB_KOSOT UvrABC system protein B OS=Kosmotoga olearia 
(strain ATCC BAA-1733 / DSM 21960 / TBF 19.5.1) OX=521045 
GN=uvrB PE=3 SV=1
Length=667

 Score = 43.9 bits (102),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 29/127 (23%), Positives = 67/127 (53%), Gaps = 25/127 (20%)

Query  351  LEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSS  410
            +E ++K+++R        R ++   T+++A     +L +      + IRA+ L       
Sbjct  433  IEEVQKVIER------GERALVTVLTKKAAEMFSAYLNE------LGIRAEYL-------  473

Query  411  QSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISM  465
              + +   ++ EV++K ++G+++++V  ++  EGLD+P  ++V      + G L +E ++
Sbjct  474  -HSELDTVERVEVLKKLREGSVDVVVGVNLLREGLDLPEVSLVAIMDADKEGFLRSETTL  532

Query  466  VQARGRA  472
            +Q  GRA
Sbjct  533  IQTIGRA  539


>sp|Q4P184|FAL1_USTMA ATP-dependent RNA helicase FAL1 OS=Ustilago 
maydis (strain 521 / FGSC 9021) OX=237631 GN=FAL1 PE=3 SV=1
Length=397

 Score = 43.5 bits (101),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 21/64 (33%), Positives = 38/64 (59%), Gaps = 0/64 (0%)

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
            SS    M Q+++ EV+ +F+ G+  +L+ T V   G+DI + ++V+ Y L TN  + +  
Sbjct  291  SSMHGEMQQKERDEVMAEFRQGSSRVLITTDVWARGIDIANISLVINYDLPTNRENYIHR  350

Query  469  RGRA  472
             GR+
Sbjct  351  IGRS  354


>sp|Q4PEX7|DBP8_USTMA ATP-dependent RNA helicase DBP8 OS=Ustilago 
maydis (strain 521 / FGSC 9021) OX=237631 GN=DBP8 PE=3 SV=2
Length=531

 Score = 43.9 bits (102),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 48/187 (26%), Positives = 78/187 (42%), Gaps = 32/187 (17%)

Query  368  PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF  427
            P  IIFT   ++A +L   L +              +G  N S  +H+ Q ++ E +Q F
Sbjct  341  PATIIFTARCKTAATLSGMLAE--------------LGIPNVSLHSHLRQSERSENLQTF  386

Query  428  QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFVATEGS  487
            +   + +L+AT V   GLDIP   +V+ + L +     V   GR           A  G 
Sbjct  387  RAQRVPVLIATDVGSRGLDIPDVELVINWDLPSAWQDYVHRVGR----------TARNGK  436

Query  488  RELKRELINE----ALETLMEQAVAAVQKMDQAEYQAKI-RDLQQAALTKRAAQAAQREN  542
            R      I E     + ++ ++    + +++  E + KI   L   A  KR A  A  ++
Sbjct  437  RGFAISFITERDIDVIHSIEDKINTKLTQLEGLEDEDKILEKLNAVATAKRVATMALHDS  496

Query  543  Q---RQQ  546
            Q   RQQ
Sbjct  497  QFGERQQ  503


>sp|O62591|IF4A_LEIMA Probable eukaryotic initiation factor 4A 
OS=Leishmania major OX=5664 GN=LmjF.01.0770 PE=3 SV=1
Length=403

 Score = 43.5 bits (101),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 0/54 (0%)

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE  462
            SS    M + D++ V+  F+ G+  +LV T +   G+D+ H N+V+ + L TN+
Sbjct  295  SSMHAEMPKSDRERVMNTFRSGSSRVLVTTDLVARGIDVHHVNIVINFDLPTNK  348


>sp|A4HRK0|IF4A_LEIIN Probable eukaryotic initiation factor 4A 
OS=Leishmania infantum OX=5671 GN=LinJ01.0780 PE=3 SV=1
Length=403

 Score = 43.5 bits (101),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 0/54 (0%)

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE  462
            SS    M + D++ V+  F+ G+  +LV T +   G+D+ H N+V+ + L TN+
Sbjct  295  SSMHAEMPKSDRERVMNTFRSGSSRVLVTTDLVARGIDVHHVNIVINFDLPTNK  348


>sp|A7TK63|DBP8_VANPO ATP-dependent RNA helicase DBP8 OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=DBP8 PE=3 SV=1
Length=431

 Score = 43.5 bits (101),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 31/101 (31%), Positives = 53/101 (52%), Gaps = 7/101 (7%)

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
            +S  + M Q ++   +Q+F+     +L+AT VA  GLDIP   +V+ Y +  +  + +  
Sbjct  282  ASLHSQMPQSERINSLQRFRANAARVLIATDVAARGLDIPTVELVINYDIPQDPDTFIHR  341

Query  469  RGR-ARADQS--VYAFVATEGSRELKR-ELINEALETLMEQ  505
             GR ARA +S    +FV     R++ R E I E +   M++
Sbjct  342  SGRTARAGRSGDAISFVT---PRDVSRIEAIEERINKKMDE  379


>sp|P0DMI1|HELS_ARCFU ATP-dependent DNA helicase Hel308 OS=Archaeoglobus 
fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 
/ NBRC 100126 / VC-16) OX=224325 GN=hel308 PE=1 SV=1
Length=691

 Score = 43.9 bits (102),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 45/168 (27%), Positives = 74/168 (44%), Gaps = 11/168 (7%)

Query  2    ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVT  61
            EL   Q E +     GKN+++ +PT AGKT  A     R  E + G K + +V    L  
Sbjct  25   ELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVR--EAIKGGKSLYVVPLRALAG  82

Query  62   QHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVE  121
            +  E F++       +   +GD   R    HL  C D+++ T+E     + +        
Sbjct  83   EKYESFKKWEKIGLRIGISTGDYESRD--EHLGDC-DIIVTTSEKADSLIRN----RASW  135

Query  122  LTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS  169
            +   S +VVDE H    D+       + L  K++R     +V+GL+A+
Sbjct  136  IKAVSCLVVDEIHLL--DSEKRGATLEILVTKMRRMNKALRVIGLSAT  181


>sp|Q25225|IF4A_LEIBR Probable eukaryotic initiation factor 4A 
OS=Leishmania braziliensis OX=5660 GN=LbrM01_V2.0740 PE=3 SV=2
Length=403

 Score = 43.5 bits (101),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 0/54 (0%)

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE  462
            SS    M + D++ V+  F+ G+  +LV T +   G+D+ H N+V+ + L TN+
Sbjct  295  SSMHAEMPKSDRERVMNTFRSGSSRVLVTTDLVARGIDVHHVNIVINFDLPTNK  348


>sp|P0CQ74|DED1_CRYNJ ATP-dependent RNA helicase ded1 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=DED1 PE=3 SV=1
Length=637

 Score = 43.9 bits (102),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 63/124 (51%), Gaps = 11/124 (9%)

Query  378  QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLL  435
            QS   +L++++ ++     D     L    +++ S H   TQR+++  +  F+ G   +L
Sbjct  420  QSGGLILVFVETKR---MADTLCDFLCSRRHNATSIHGDRTQREREAALYAFKSGRAPIL  476

Query  436  VATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR----GRARADQSVYAFVATEGSRELK  491
            VAT+VA  GLDIP+   V+ Y  L N+++    R    GRA    +  AF    G+  + 
Sbjct  477  VATAVAARGLDIPNVTHVILYD-LPNDVAEYTHRIGRTGRAGNVGTSTAFF-NRGNTNIG  534

Query  492  RELI  495
            ++LI
Sbjct  535  KDLI  538


>sp|P0CQ75|DED1_CRYNB ATP-dependent RNA helicase ded1 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=DED1 PE=3 SV=1
Length=637

 Score = 43.9 bits (102),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 63/124 (51%), Gaps = 11/124 (9%)

Query  378  QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLL  435
            QS   +L++++ ++     D     L    +++ S H   TQR+++  +  F+ G   +L
Sbjct  420  QSGGLILVFVETKR---MADTLCDFLCSRRHNATSIHGDRTQREREAALYAFKSGRAPIL  476

Query  436  VATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR----GRARADQSVYAFVATEGSRELK  491
            VAT+VA  GLDIP+   V+ Y  L N+++    R    GRA    +  AF    G+  + 
Sbjct  477  VATAVAARGLDIPNVTHVILYD-LPNDVAEYTHRIGRTGRAGNVGTSTAFF-NRGNTNIG  534

Query  492  RELI  495
            ++LI
Sbjct  535  KDLI  538


>sp|Q47281|T1RE_ECOLX Type I restriction enzyme EcoEI endonuclease 
subunit OS=Escherichia coli OX=562 GN=hsdR PE=3 SV=1
Length=813

 Score = 43.9 bits (102),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 78/179 (44%), Gaps = 36/179 (20%)

Query  4    RSYQWEVIMPALE----GKN-IIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVH  58
            R YQ + I   ++    GKN I++ + TG GKT  A  +  R  +  +  +++ L +R  
Sbjct  169  RYYQMQAINRTVDAVSAGKNRILLVMATGTGKTYTAFQIIWRLWKAKNKKRILFLADRNI  228

Query  59   LVTQHG-EEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE  117
            LV Q    +F+   +    VT  + D        HLA            L  A+T PEE 
Sbjct  229  LVDQTKRNDFQPFGNAMTKVTGRTIDPAYEV---HLA------------LYQAITGPEEH  273

Query  118  E----HVELTVFSLIVVDECHH--THKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASP  170
            +     V    F LIV+DECH     +D+ +  I+ +Y     Q        +GLTA+P
Sbjct  274  QKAYKQVAPDFFDLIVIDECHRGSASEDSAWREIL-EYFGSATQ--------VGLTATP  323


>sp|Q9Z6C9|CSHA_LIMRT ATP-dependent RNA helicase CshA OS=Limosilactobacillus 
reuteri OX=1598 GN=cshA PE=3 SV=1
Length=497

 Score = 43.5 bits (101),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 2/79 (3%)

Query  396  VDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV  453
            VD  ++ LI  G ++   H  +TQ  + +++ KF++  L++LVAT VA  GLDI     V
Sbjct  252  VDELSKGLIARGYNAAGIHGDLTQDKRSKIMWKFKNNELDILVATDVAARGLDISGVTHV  311

Query  454  VRYGLLTNEISMVQARGRA  472
              Y + ++  S V   GR 
Sbjct  312  YNYDIPSDPDSYVHRIGRT  330


>sp|Q9M2F9|RH52_ARATH DEAD-box ATP-dependent RNA helicase 52 OS=Arabidopsis 
thaliana OX=3702 GN=RH52 PE=1 SV=1
Length=646

 Score = 43.9 bits (102),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 33/111 (30%), Positives = 51/111 (46%), Gaps = 15/111 (14%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            ++F  T++ A SL  WL               + G   ++     +Q++++  ++ F+ G
Sbjct  409  LVFVETKKGADSLENWL--------------CINGFPATTIHGDRSQQEREVALRSFKTG  454

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYA  480
               +LVAT VA  GLDIPH   VV + L  +    V   GR  RA  S  A
Sbjct  455  RTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNSGLA  505


>sp|Q2H720|DBP2_CHAGB ATP-dependent RNA helicase DBP2 OS=Chaetomium 
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 
6347 / NRRL 1970) OX=306901 GN=DBP2 PE=3 SV=1
Length=562

 Score = 43.9 bits (102),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 41/148 (28%), Positives = 74/148 (50%), Gaps = 21/148 (14%)

Query  351  LEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSS  410
            ++ LEKI++ + S +   + +IFT T++ A  +  +L+Q  G   + I        G+  
Sbjct  372  IKHLEKIMEDKESQN---KILIFTGTKRVADEITRFLRQD-GWPALSIH-------GDKQ  420

Query  411  QSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE---ISMVQ  467
            Q+    +RD   V+ +F+ G   ++VAT VA  G+D+ +   V+ Y    N    I  + 
Sbjct  421  QN----ERDW--VLDQFKTGKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIG  474

Query  468  ARGRARADQSVYAFVATEGSRELKRELI  495
              GRA A  +   F  T+ S++  R+L+
Sbjct  475  RTGRAGAKGTAITFFTTDNSKQ-ARDLV  501


>sp|Q5HGK6|RECG_STAAC ATP-dependent DNA helicase RecG OS=Staphylococcus 
aureus (strain COL) OX=93062 GN=recG PE=3 SV=1
Length=686

 Score = 43.9 bits (102),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 44/71 (62%), Gaps = 10/71 (14%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQAR  469
            ++  ++ EV+QKF +  +N+LV+T+V E G+++P+   ++     R+GL T    + Q R
Sbjct  518  LSADEKDEVMQKFSNHEINVLVSTTVVEVGVNVPNATFMMIYDADRFGLST----LHQLR  573

Query  470  GR-ARADQSVY  479
            GR  R+DQ  Y
Sbjct  574  GRVGRSDQQSY  584


>sp|O50581|RECG_STAA8 ATP-dependent DNA helicase RecG OS=Staphylococcus 
aureus (strain NCTC 8325 / PS 47) OX=93061 GN=recG 
PE=3 SV=1
Length=686

 Score = 43.9 bits (102),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 44/71 (62%), Gaps = 10/71 (14%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQAR  469
            ++  ++ EV+QKF +  +N+LV+T+V E G+++P+   ++     R+GL T    + Q R
Sbjct  518  LSADEKDEVMQKFSNHEINVLVSTTVVEVGVNVPNATFMMIYDADRFGLST----LHQLR  573

Query  470  GR-ARADQSVY  479
            GR  R+DQ  Y
Sbjct  574  GRVGRSDQQSY  584


>sp|Q6CIV2|DBP2_KLULA ATP-dependent RNA helicase DBP2 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 
1267 / NRRL Y-1140 / WM37) OX=284590 GN=DBP2 PE=3 SV=1
Length=554

 Score = 43.9 bits (102),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 30/108 (28%), Positives = 57/108 (53%), Gaps = 11/108 (10%)

Query  417  QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY---GLLTNEISMVQARGRAR  473
            Q ++  V+ +F+ G   ++VAT VA  G+D+   N V+ Y   G + + +  +   GRA 
Sbjct  396  QNERDWVLAEFRSGRSPIMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAG  455

Query  474  ADQSVYAFVATEGSRELKRELIN---EALETLMEQAVAAVQKMDQAEY  518
            +  +  +F  TEG++ L   LI    EA + + E+    +++ D+ +Y
Sbjct  456  STGTAISFF-TEGNKSLGAALIKIMREAKQDIPEE----LRRYDRGQY  498


>sp|P42305|DBPA_BACSU ATP-dependent RNA helicase DbpA OS=Bacillus 
subtilis (strain 168) OX=224308 GN=dbpA PE=1 SV=2
Length=479

 Score = 43.5 bits (101),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 36/135 (27%), Positives = 56/135 (41%), Gaps = 18/135 (13%)

Query  338  LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD  397
            + H      E  K  +L+ +L     + N    IIF RT++  + L   L          
Sbjct  215  IEHAVIQVREENKFSLLKDVLM----TENPDSCIIFCRTKEHVNQLTDELDD--------  262

Query  398  IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG  457
                  +G         M Q D+ +V+ +F+ G    LVAT VA  G+DI + ++V+ Y 
Sbjct  263  ------LGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYD  316

Query  458  LLTNEISMVQARGRA  472
            L   + S V   GR 
Sbjct  317  LPLEKESYVHRTGRT  331


>sp|Q9ZB21|UVRB_MYCPL UvrABC system protein B OS=Mycoplasmopsis 
pulmonis OX=2107 GN=uvrB PE=3 SV=1
Length=660

 Score = 43.9 bits (102),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 35/137 (26%), Positives = 69/137 (50%), Gaps = 21/137 (15%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            R +I T T+++A  L L+LQ+++ +++  I  +  I   N             E+++  +
Sbjct  448  RTLILTTTKKNAEELSLFLQEKK-IKSAYIHDRFKIFERN-------------EILKGLR  493

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGR-ARADQSVYAFV  482
             G  +++V  ++ +EG+D+P  +++        GL+ +  S++Q  GR AR D     F 
Sbjct  494  MGKFDVVVGINLLKEGIDLPEVSLICVLNADSTGLMRDTRSLIQIVGRAARNDHGKVIFY  553

Query  483  ATEGSRELKRELINEAL  499
            A E +  + RE I + L
Sbjct  554  ANEITSSM-RECIEDNL  569


>sp|B3PLX9|UVRB_META1 UvrABC system protein B OS=Metamycoplasma 
arthritidis (strain 158L3-1) OX=243272 GN=uvrB PE=3 SV=1
Length=660

 Score = 43.9 bits (102),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 35/137 (26%), Positives = 69/137 (50%), Gaps = 21/137 (15%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            R +I T T+++A  L L+LQ+++ +++  I  +  I   N             E+++  +
Sbjct  448  RTLILTTTKKNAEELSLFLQEKK-IKSAYIHDRFKIFERN-------------EILKGLR  493

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGR-ARADQSVYAFV  482
             G  +++V  ++ +EG+D+P  +++        GL+ +  S++Q  GR AR D     F 
Sbjct  494  MGKFDVVVGINLLKEGIDLPEVSLICVLNADSTGLMRDTRSLIQIVGRAARNDHGKVIFY  553

Query  483  ATEGSRELKRELINEAL  499
            A E +  + RE I + L
Sbjct  554  ANEITSSM-RECIEDNL  569


>sp|Q6BTL5|DRS1_DEBHA ATP-dependent RNA helicase DRS1 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / 
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DRS1 PE=3 SV=1
Length=771

 Score = 43.9 bits (102),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 68/151 (45%), Gaps = 20/151 (13%)

Query  358  LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ  417
            L +    S   R ++F   ++SAH L + L               L+G   S     +TQ
Sbjct  498  LIKSVDPSQQNRIVVFVARKESAHKLRIILG--------------LLGMRVSELHGSLTQ  543

Query  418  RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL-LTNEISM--VQARGRARA  474
              +   +  F++ T+ +L+ T +A  GLDIP   +V+ Y +  T+EI +  V    RA  
Sbjct  544  EQRLASVNDFKNLTVPVLICTDLAARGLDIPKIEIVINYDMPKTHEIYLHRVGRTARAGR  603

Query  475  DQSVYAFVATEGSRELKRELINEALETLMEQ  505
            +     FV   G     R ++ +A++++ E+
Sbjct  604  EGKSITFV---GESTQDRAIVKDAIKSISEE  631


>sp|Q5RF43|DDX3Y_PONAB ATP-dependent RNA helicase DDX3Y OS=Pongo 
abelii OX=9601 GN=DDX3Y PE=2 SV=1
Length=658

 Score = 43.9 bits (102),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 50/90 (56%), Gaps = 5/90 (6%)

Query  384  LLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVA  441
            L++++ ++G  +++     L   G +  S H   +QRD++E + +F+ G   +LVAT+VA
Sbjct  443  LVFVETKKGADSLE---DFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVA  499

Query  442  EEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
              GLDI +   V+ + L ++    V   GR
Sbjct  500  ARGLDISNVRHVINFDLPSDIEEYVHRIGR  529


>sp|Q12WZ6|HELS_METBU ATP-dependent DNA helicase Hel308 OS=Methanococcoides 
burtonii (strain DSM 6242 / NBRC 107633 / OCM 
468 / ACE-M) OX=259564 GN=hel308 PE=3 SV=1
Length=760

 Score = 43.9 bits (102),  Expect = 0.006, Method: Compositional matrix adjust.
 Identities = 48/178 (27%), Positives = 81/178 (46%), Gaps = 26/178 (15%)

Query  2    ELRSYQWEVI-MPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV  60
            EL   Q E I M  LE KN++  +PT +GKT  A     + +   +G K + +V    L 
Sbjct  23   ELYPPQAEAIEMGLLEKKNLLAAIPTASGKTLLAELAMIKAIR--EGGKALYIVPLRALA  80

Query  61   TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAE----LLQMALTSPEE  116
            ++  E F+ +      V   +GD+  RA +      +D+++ T+E    LL+   +  +E
Sbjct  81   SEKFERFKELAPFGIKVGISTGDLDSRADW---LGVNDIIVATSEKTDSLLRNGTSWMDE  137

Query  117  EEHVELTVFSLIVVDECH---HTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPG  171
                     + +VVDE H     ++     V ++     KL R  P  QV+ L+A+ G
Sbjct  138  --------ITTVVVDEIHLLDSKNRGPTLEVTIT-----KLMRLNPDVQVVALSATVG  182


>sp|O00571|DDX3X_HUMAN ATP-dependent RNA helicase DDX3X OS=Homo 
sapiens OX=9606 GN=DDX3X PE=1 SV=3
Length=662

 Score = 43.9 bits (102),  Expect = 0.006, Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 50/90 (56%), Gaps = 5/90 (6%)

Query  384  LLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVA  441
            L++++ ++G  +++     L   G +  S H   +QRD++E + +F+ G   +LVAT+VA
Sbjct  445  LVFVETKKGADSLE---DFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVA  501

Query  442  EEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
              GLDI +   V+ + L ++    V   GR
Sbjct  502  ARGLDISNVKHVINFDLPSDIEEYVHRIGR  531


>sp|Q62167|DDX3X_MOUSE ATP-dependent RNA helicase DDX3X OS=Mus 
musculus OX=10090 GN=Ddx3x PE=1 SV=3
Length=662

 Score = 43.5 bits (101),  Expect = 0.006, Method: Compositional matrix adjust.
 Identities = 34/128 (27%), Positives = 60/128 (47%), Gaps = 20/128 (16%)

Query  350  KLEMLEKILQRQF------SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLL  403
            K+  +E+I +R F      ++      ++F  T++ A SL  +L  +             
Sbjct  418  KVVWVEEIDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE-------------  464

Query  404  IGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI  463
             G   +S     +QRD++E + +F+ G   +LVAT+VA  GLDI +   V+ + L ++  
Sbjct  465  -GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIE  523

Query  464  SMVQARGR  471
              V   GR
Sbjct  524  EYVHRIGR  531


>sp|Q8PZR7|HELS_METMA ATP-dependent DNA helicase Hel308 OS=Methanosarcina 
mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 
/ JCM 11833 / OCM 88) OX=192952 GN=hel308 PE=3 SV=1
Length=730

 Score = 43.9 bits (102),  Expect = 0.006, Method: Compositional matrix adjust.
 Identities = 52/181 (29%), Positives = 84/181 (46%), Gaps = 30/181 (17%)

Query  1    MELRSYQWEVIMPAL-EGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHL  59
            +EL   Q E +   L EGKN++  +PT +GKT  A     + +  ++G K + +V    L
Sbjct  22   LELYPPQAEAVEKGLLEGKNLLAAIPTASGKTLLAELAMLKSV--LNGGKALYIVPLRAL  79

Query  60   VTQHGEEFRR-----MLDGRWTVTTLSGDMGPR-AGFGHLARCHDLLICTAELLQMALTS  113
             +   E+FRR     +L  R  ++T  GD   R  G G     +D+++ T+E     L +
Sbjct  80   AS---EKFRRFQEFSVLGMRVGIST--GDYDRRDEGLG----INDIIVATSEKTDSLLRN  130

Query  114  PEEEEHVELTVFSLIVVDECH---HTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASP  170
                E   +   S++V DE H      +     + +S     KL+R  P  QVL L+A+ 
Sbjct  131  ----ETAWMQEISVVVADEVHLIDSPDRGPTLEITLS-----KLRRMNPSCQVLALSATV  181

Query  171  G  171
            G
Sbjct  182  G  182


>sp|O15523|DDX3Y_HUMAN ATP-dependent RNA helicase DDX3Y OS=Homo 
sapiens OX=9606 GN=DDX3Y PE=1 SV=2
Length=660

 Score = 43.5 bits (101),  Expect = 0.006, Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 50/90 (56%), Gaps = 5/90 (6%)

Query  384  LLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVA  441
            L++++ ++G  +++     L   G +  S H   +QRD++E + +F+ G   +LVAT+VA
Sbjct  443  LVFVETKKGADSLE---DFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVA  499

Query  442  EEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
              GLDI +   V+ + L ++    V   GR
Sbjct  500  ARGLDISNVRHVINFDLPSDIEEYVHRIGR  529


>sp|Q5HRQ2|MFD_STAEQ Transcription-repair-coupling factor OS=Staphylococcus 
epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 
17069 / CCUG 31568 / BM 3577 / RP62A) OX=176279 GN=mfd PE=3 
SV=1
Length=1169

 Score = 43.9 bits (102),  Expect = 0.006, Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 61/118 (52%), Gaps = 17/118 (14%)

Query  414  HMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQA  468
             MT+RD +E +  F +   ++LV T++ E G+D+P+ N ++     R+GL      + Q 
Sbjct  863  QMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIEEADRFGLS----QLYQL  918

Query  469  RGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDL  525
            RGR  R+ +  YA+     ++     ++NE  E  + QA+    ++    ++  +RDL
Sbjct  919  RGRVGRSSRIGYAYFLHPANK-----VLNETAEERL-QAIKEFTELGSG-FKIAMRDL  969


>sp|Q8TL39|HELS_METAC ATP-dependent DNA helicase Hel308 OS=Methanosarcina 
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 
12185 / C2A) OX=188937 GN=hel308 PE=3 SV=1
Length=730

 Score = 43.5 bits (101),  Expect = 0.006, Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 89/210 (42%), Gaps = 25/210 (12%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGR  74
            LEGKN++  +PT +GKT  A     + +  + G K + +V    L ++    F+   +  
Sbjct  37   LEGKNLLAAIPTASGKTLLAELAMLKSV--LAGGKALYIVPLRALASEKFRRFQDFSELG  94

Query  75   WTVTTLSGDMGPR-AGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC  133
              V   +GD   R  G G     +D+++ T+E     L +    E   +   S++VVDE 
Sbjct  95   IRVGISTGDYDRRDEGLG----INDIIVATSEKTDSLLRN----ETAWMQEISVVVVDEV  146

Query  134  H---HTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLC-  189
            H      +     V ++     KL++  P  Q+L L+A+   G A +L   ++  L L  
Sbjct  147  HLIDSADRGPTLEVTLA-----KLRKMNPFCQILALSAT--VGNADELAAWLDAELVLSE  199

Query  190  ---ANLDTWCIMSPQNCCPQLQEHSQQPCK  216
                +L           C   ++  +QP K
Sbjct  200  WRPTDLMEGVFFDGTFFCKDKEKLIEQPTK  229


>sp|Q9K6X9|UVRB_HALH5 UvrABC system protein B OS=Halalkalibacterium 
halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 
/ JCM 9153 / C-125) OX=272558 GN=uvrB PE=3 SV=1
Length=660

 Score = 43.5 bits (101),  Expect = 0.006, Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 62/123 (50%), Gaps = 19/123 (15%)

Query  365  SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI  424
            + + R ++ T T++ A  L  +L++      V I+ + L         + +   ++ E+I
Sbjct  443  AKNERVLVTTLTKKMAEDLTDYLKE------VGIKVRYL--------HSEVKTLERIEII  488

Query  425  QKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRARADQSVY  479
            ++ + GT N+LV  ++  EGLDIP  ++V      + G L  E S++Q  GRA  + + Y
Sbjct  489  RQLRLGTFNVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAARNANGY  548

Query  480  AFV  482
              +
Sbjct  549  VIM  551


>sp|Q8Y7M8|DBPA_LISMO ATP-dependent RNA helicase DbpA OS=Listeria 
monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) 
OX=169963 GN=dbpA PE=2 SV=1
Length=470

 Score = 43.5 bits (101),  Expect = 0.006, Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 64/154 (42%), Gaps = 22/154 (14%)

Query  355  EKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH  414
            EK L+    + N    IIF  T+     L   L         D++A  + G         
Sbjct  221  EKTLKDVLITENPDSAIIFCNTKNQVDELTDLL---------DVKASKIHGG--------  263

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGR  471
            + Q D+   +  F+ G    L+AT VA  G+D+ + ++V+ Y L     N +  +   GR
Sbjct  264  LRQEDRFRAMDDFKSGKSRFLIATDVAGRGIDVDNVSLVINYDLPIEKENYVHRIGRTGR  323

Query  472  ARADQSVYAFVATEGSRELKRELINEALETLMEQ  505
            A       +FV T  +  L+   I E L+  +E+
Sbjct  324  AGKSGKAISFVKTNENPLLRD--IEEMLDVTIEK  355


>sp|P54509|YQHH_BACSU Uncharacterized ATP-dependent helicase YqhH 
OS=Bacillus subtilis (strain 168) OX=224308 GN=yqhH PE=3 
SV=1
Length=557

 Score = 43.5 bits (101),  Expect = 0.006, Method: Compositional matrix adjust.
 Identities = 27/101 (27%), Positives = 46/101 (46%), Gaps = 15/101 (15%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            IIFT  R +    L W  QQ G+ +V  R                 +R +++ ++    G
Sbjct  376  IIFTEYR-ATQIYLQWFLQQNGISSVPFRGGF--------------KRGKKDWMKDLFRG  420

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
             + +L+AT    EG+++  CN ++ Y L  N + + Q  GR
Sbjct  421  KIQVLIATEAGGEGINLQFCNHMINYDLPWNPMRLEQRIGR  461


>sp|Q8TFK8|DED1_CANGA ATP-dependent RNA helicase DED1 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DED1 PE=3 SV=1
Length=617

 Score = 43.5 bits (101),  Expect = 0.007, Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 14/110 (13%)

Query  362  FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ  421
             ++SN    +IF  T++ A  L  +L  Q      +  A  + G          +Q +++
Sbjct  397  LAASNDNLTLIFVETKRMADQLTDFLIMQ------NFSATAIHG--------DRSQAERE  442

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
              +  F+ G  N+LVAT+VA  GLDIP+   V+ Y L ++    V   GR
Sbjct  443  RALAAFRSGRANILVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGR  492


>sp|Q6GVM6|DDX3Y_PANTR ATP-dependent RNA helicase DDX3Y OS=Pan 
troglodytes OX=9598 GN=DDX3Y PE=2 SV=1
Length=660

 Score = 43.5 bits (101),  Expect = 0.007, Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 50/90 (56%), Gaps = 5/90 (6%)

Query  384  LLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVA  441
            L++++ ++G  +++     L   G +  S H   +QRD++E + +F+ G   +LVAT+VA
Sbjct  443  LVFVETKKGADSLE---DFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVA  499

Query  442  EEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
              GLDI +   V+ + L ++    V   GR
Sbjct  500  ARGLDISNVRHVINFDLPSDIEEYVHRIGR  529


>sp|A5DF03|PRP28_PICGU Pre-mRNA-splicing ATP-dependent RNA helicase 
PRP28 OS=Meyerozyma guilliermondii (strain ATCC 6260 / 
CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 
GN=PRP28 PE=3 SV=2
Length=575

 Score = 43.5 bits (101),  Expect = 0.007, Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 66/145 (46%), Gaps = 17/145 (12%)

Query  349  PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN  408
            P+   +   L++    +  P  IIF   +++   L + L  Q      ++ + ++I    
Sbjct  413  PRTNKMISALRQHIRETEQPLIIIFANFKRTCELLSVELSNQ------NVGSNIVIHGSK  466

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISM  465
            S       Q  ++  I  F++  +N+L+AT VA  G+DIP+ ++VV Y +       I  
Sbjct  467  S-------QEARESAIASFREHKVNVLIATDVAARGIDIPNVSLVVNYHMPKRFDEYIHR  519

Query  466  VQARGRARADQSVYAFVATEGSREL  490
            +   GRA    +  +FV  +G  E+
Sbjct  520  IGRTGRAGKSGASLSFV-DDGDSEI  543


>sp|P0A4D8|CSHA_STRR6 DEAD-box ATP-dependent RNA helicase CshA 
OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) OX=171101 
GN=cshA PE=3 SV=1
Length=524

 Score = 43.1 bits (100),  Expect = 0.007, Method: Compositional matrix adjust.
 Identities = 36/117 (31%), Positives = 56/117 (48%), Gaps = 19/117 (16%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            I+F RT++    L       +GL+    RA+ + G         + Q  +  V++ F++G
Sbjct  243  IVFGRTKRRVDEL------TRGLKIRGFRAEGIHG--------DLDQNKRLRVLRDFKNG  288

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR----ARADQSVYAFVA  483
             L++LVAT VA  GLDI     V  Y +  +  S V   GR     ++ QS+  FVA
Sbjct  289  NLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSI-TFVA  344


>sp|P0A4D7|CSHA_STRPN DEAD-box ATP-dependent RNA helicase CshA 
OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 
/ TIGR4) OX=170187 GN=cshA PE=3 SV=1
Length=524

 Score = 43.1 bits (100),  Expect = 0.007, Method: Compositional matrix adjust.
 Identities = 36/117 (31%), Positives = 56/117 (48%), Gaps = 19/117 (16%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            I+F RT++    L       +GL+    RA+ + G         + Q  +  V++ F++G
Sbjct  243  IVFGRTKRRVDEL------TRGLKIRGFRAEGIHG--------DLDQNKRLRVLRDFKNG  288

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR----ARADQSVYAFVA  483
             L++LVAT VA  GLDI     V  Y +  +  S V   GR     ++ QS+  FVA
Sbjct  289  NLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSI-TFVA  344


>sp|Q7SH33|PRP5_NEUCR Pre-mRNA-processing ATP-dependent RNA helicase 
prp-5 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A 
/ CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=prp-5 
PE=3 SV=1
Length=1194

 Score = 43.5 bits (101),  Expect = 0.007, Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 56/142 (39%), Gaps = 17/142 (12%)

Query  347  ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA  406
            E  K   L ++L   ++  +  R +IF   ++ A  LL  L              L  G 
Sbjct  791  EGKKFNRLLELLGELYADDDDVRSLIFVERQEKADDLLREL--------------LRRGY  836

Query  407  GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEI  463
            G  S      Q D+   I  F+ G   +L+ATS+A  GLD+    +V+ Y     L + +
Sbjct  837  GCMSIHGGKDQEDRNSTISDFKKGVCPILIATSIAARGLDVKQLKLVINYDAPNHLEDYV  896

Query  464  SMVQARGRARADQSVYAFVATE  485
                  GRA    +   F+  E
Sbjct  897  HRAGRTGRAGNTGTAVTFITEE  918


>sp|Q58969|Y1574_METJA Uncharacterized ATP-dependent helicase 
MJ1574 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / 
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ1574 
PE=3 SV=1
Length=684

 Score = 43.5 bits (101),  Expect = 0.007, Method: Compositional matrix adjust.
 Identities = 38/168 (23%), Positives = 80/168 (48%), Gaps = 19/168 (11%)

Query  340  HLATHGPEN-PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI  398
            +LA   P+N    ++L ++++      N+ + ++F  TR+    L+ +L   +    +  
Sbjct  250  YLAILEPKNLDNKQLLRRLIENL--VDNNIKTLVFFDTRKETEKLMRFLLNSKVFYKL--  305

Query  399  RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL  458
                      S+    + +  ++E+ +KF++G +  L+ T+  E G+DI   + V+ YG+
Sbjct  306  ----------STYKGTLPKYVREEIEEKFKNGEILALLTTNALELGIDIGDLDAVINYGI  355

Query  459  LTNEI-SMVQARGRA-RADQSVYAFVA--TEGSRELKRELINEALETL  502
              + I S++Q  GRA R D+     +    +G     +E +NE  E +
Sbjct  356  PPDGIFSLIQRFGRAGRRDKEALNIIVLRKDGLDYYYKEHLNELYERI  403


>sp|P58174|UVRB_MYCPU UvrABC system protein B OS=Mycoplasmopsis 
pulmonis (strain UAB CTIP) OX=272635 GN=uvrB PE=3 SV=1
Length=657

 Score = 43.1 bits (100),  Expect = 0.008, Method: Compositional matrix adjust.
 Identities = 35/141 (25%), Positives = 68/141 (48%), Gaps = 25/141 (18%)

Query  358  LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ  417
            LQ+Q   + + R +I T T++ +  L  + Q++ G +   I             S H T 
Sbjct  436  LQKQ--KAKNERTLILTTTKRFSEELTRYFQEK-GEKVAYI------------HSDHKT-  479

Query  418  RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
             ++ E+++K + G  +L++  ++  EG+D+P  ++V+     +   L N  S++Q  GRA
Sbjct  480  FERNEILRKLRKGVYDLVIGINLLREGIDLPEVSLVIILDADKESFLRNTKSLIQIVGRA  539

Query  473  RADQS----VYAFVATEGSRE  489
              + S     YA   ++  RE
Sbjct  540  SRNSSGKVIFYADFVSKSMRE  560


>sp|A6RJA2|PRP28_BOTFB Pre-mRNA-splicing ATP-dependent RNA helicase 
prp28 OS=Botryotinia fuckeliana (strain B05.10) OX=332648 
GN=prp28 PE=3 SV=2
Length=817

 Score = 43.5 bits (101),  Expect = 0.008, Method: Compositional matrix adjust.
 Identities = 36/118 (31%), Positives = 59/118 (50%), Gaps = 9/118 (8%)

Query  416  TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA  474
            TQ  ++  +   + G  N+LVAT +A  G+D+P  ++VV + + TN  S     GR  RA
Sbjct  688  TQEQREAALASVRSGATNVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIGRTGRA  747

Query  475  DQSVYA--FVATEGSR---ELKRELINEALETLMEQA---VAAVQKMDQAEYQAKIRD  524
             +S  A  F+  E S    +LK+ L   ++  + E+     AA QK  + +   KI +
Sbjct  748  GKSGVAITFLGNEDSDTMYDLKQMLTKSSISRVPEELRKHEAAQQKSQRGQGMKKIEE  805


>sp|A7IB61|HELS_METB6 ATP-dependent DNA helicase Hel308 OS=Methanoregula 
boonei (strain DSM 21154 / JCM 14090 / 6A8) OX=456442 
GN=hel308 PE=3 SV=1
Length=723

 Score = 43.1 bits (100),  Expect = 0.008, Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 76/165 (46%), Gaps = 30/165 (18%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGR  74
            L+GKN+++ +PT +GKT  A     RH+   +G K + +V    L ++  EEF       
Sbjct  37   LDGKNLLVAIPTASGKTLIAEMAMHRHI--ANGGKCLYIVPLKALASEKYEEF-------  87

Query  75   WTVTTLSGDMGPRAGF--GHLAR------CHDLLICTAELLQMALTSPEEEEHVELTVFS  126
                   G+ G + G   G L R       +D+++ T+E +   L +        +   +
Sbjct  88   -------GNKGVKVGLSTGDLDRRDDALGKNDIIVATSEKVDSLLRNGAR----WIPDIT  136

Query  127  LIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPG  171
            L+V+DE H    D+       + +  K++   P  Q++GL+A+ G
Sbjct  137  LVVIDEIHLI--DSPDRGPTLEMVIAKMRSKNPGMQLIGLSATIG  179


>sp|Q55BR9|DDX49_DICDI Probable ATP-dependent RNA helicase ddx49 
OS=Dictyostelium discoideum OX=44689 GN=ddx49 PE=3 SV=1
Length=508

 Score = 43.1 bits (100),  Expect = 0.008, Method: Compositional matrix adjust.
 Identities = 19/60 (32%), Positives = 32/60 (53%), Gaps = 0/60 (0%)

Query  413  THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA  472
            + + Q+ +   ++ F+ G + +LVAT VA  GLDIP   +V+ Y L  +    +   GR 
Sbjct  277  SFLDQKSRLAALKTFKSGKVKVLVATDVASRGLDIPDVQIVINYKLSNSSKDYIHRVGRT  336


>sp|B9KH59|UVRB_ANAMF UvrABC system protein B OS=Anaplasma marginale 
(strain Florida) OX=320483 GN=uvrB PE=3 SV=1
Length=651

 Score = 43.1 bits (100),  Expect = 0.008, Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 62/129 (48%), Gaps = 18/129 (14%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRARADQ  476
            E+I   + G +++LV  ++  EGLDIP C +V      + G L +  S++Q  GRA  + 
Sbjct  485  EIISDLRLGVIDVLVGVNLMREGLDIPECALVGILDADKEGFLRSTTSLIQTIGRAARN-  543

Query  477  SVYAFVATEGSRELKRELINEALETLMEQA--VAAVQKMDQAEYQAKIRDLQ---QAALT  531
                    EG   L   +I +++ T ME+      +Q+    E+    R +Q   Q +L+
Sbjct  544  -------VEGRVILYANVITKSMRTAMEETDRRRDIQRKYNQEHSIVPRTIQKPVQTSLS  596

Query  532  KRAAQAAQR  540
            +R   + ++
Sbjct  597  ERVGSSRKK  605


>sp|Q5U526|I4A3A_XENLA Eukaryotic initiation factor 4A-III-A OS=Xenopus 
laevis OX=8355 GN=eif4a3-a PE=2 SV=1
Length=415

 Score = 42.7 bits (99),  Expect = 0.008, Method: Compositional matrix adjust.
 Identities = 23/86 (27%), Positives = 43/86 (50%), Gaps = 3/86 (3%)

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE---ISM  465
            SS    M Q++++ ++++F+ G   +L++T V   GLD+P  ++++ Y L  N    I  
Sbjct  309  SSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHR  368

Query  466  VQARGRARADQSVYAFVATEGSRELK  491
            +   GR         FV  +  R L+
Sbjct  369  IGRSGRYGGKGVAINFVKNDDIRILR  394


>sp|Q5P9H3|UVRB_ANAMM UvrABC system protein B OS=Anaplasma marginale 
(strain St. Maries) OX=234826 GN=uvrB PE=3 SV=1
Length=651

 Score = 43.1 bits (100),  Expect = 0.008, Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 62/129 (48%), Gaps = 18/129 (14%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRARADQ  476
            E+I   + G +++LV  ++  EGLDIP C +V      + G L +  S++Q  GRA  + 
Sbjct  485  EIISDLRLGVIDVLVGVNLMREGLDIPECALVGILDADKEGFLRSTTSLIQTIGRAARN-  543

Query  477  SVYAFVATEGSRELKRELINEALETLMEQA--VAAVQKMDQAEYQAKIRDLQ---QAALT  531
                    EG   L   +I +++ T ME+      +Q+    E+    R +Q   Q +L+
Sbjct  544  -------VEGRVILYANVITKSMRTAMEETDRRRDIQRKYNQEHSIVPRTIQKPVQTSLS  596

Query  532  KRAAQAAQR  540
            +R   + ++
Sbjct  597  ERVGSSRKK  605


>sp|C6DHF5|RHLB_PECCP ATP-dependent RNA helicase RhlB OS=Pectobacterium 
carotovorum subsp. carotovorum (strain PC1) OX=561230 
GN=rhlB PE=3 SV=1
Length=430

 Score = 42.7 bits (99),  Expect = 0.008, Method: Compositional matrix adjust.
 Identities = 38/133 (29%), Positives = 59/133 (44%), Gaps = 19/133 (14%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +L+ ++      R IIF  T+     +  W      L     R  LL G    
Sbjct  243  KMRLLQTLLEEEWPD----RCIIFANTKHRCEDI--WGH----LAADGHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q+ +  ++++F  G L++LVAT VA  GL IP    V  Y L  +    V   
Sbjct  289  ----DVAQKKRLRILEEFTQGNLDILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRI  344

Query  470  GR-ARADQSVYAF  481
            GR  RA QS ++ 
Sbjct  345  GRTGRAGQSGFSI  357


>sp|Q5ZM36|IF4A3_CHICK Eukaryotic initiation factor 4A-III OS=Gallus 
gallus OX=9031 GN=EIF4A3 PE=2 SV=1
Length=412

 Score = 42.7 bits (99),  Expect = 0.009, Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 37/64 (58%), Gaps = 0/64 (0%)

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
            SS    M Q++++ ++++F+ G   +L++T V   GLD+P  ++++ Y L  N    +  
Sbjct  306  SSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHR  365

Query  469  RGRA  472
             GR+
Sbjct  366  IGRS  369


>sp|B7ZTW1|IF4A3_XENTR Eukaryotic initiation factor 4A-III OS=Xenopus 
tropicalis OX=8364 GN=eif4a3 PE=2 SV=1
Length=415

 Score = 42.7 bits (99),  Expect = 0.009, Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 37/64 (58%), Gaps = 0/64 (0%)

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
            SS    M Q++++ ++++F+ G   +L++T V   GLD+P  ++++ Y L  N    +  
Sbjct  309  SSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHR  368

Query  469  RGRA  472
             GR+
Sbjct  369  IGRS  372


>sp|A1DGZ7|DBP2_NEOFI ATP-dependent RNA helicase dbp2 OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / 
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dbp2 
PE=3 SV=1
Length=545

 Score = 43.1 bits (100),  Expect = 0.009, Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 69/150 (46%), Gaps = 27/150 (18%)

Query  351  LEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSS  410
            ++ LEKI++ + +       +IFT T++ A  +  +L+Q                 G  +
Sbjct  355  IKHLEKIMENRGNKC-----LIFTGTKRIADEITRFLRQD----------------GWPA  393

Query  411  QSTHMTQRDQQE--VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE---ISM  465
             S H  ++ Q+   V+ +F+ G   ++VAT VA  G+D+     V+ Y    N    I  
Sbjct  394  LSIHGDKQQQERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYIHR  453

Query  466  VQARGRARADQSVYAFVATEGSRELKRELI  495
            +   GRA A  +   F  TE S++  R+L+
Sbjct  454  IGRTGRAGAKGTAITFFTTENSKQ-ARDLV  482


>sp|Q8N8A6|DDX51_HUMAN ATP-dependent RNA helicase DDX51 OS=Homo 
sapiens OX=9606 GN=DDX51 PE=1 SV=3
Length=666

 Score = 43.1 bits (100),  Expect = 0.009, Method: Compositional matrix adjust.
 Identities = 43/182 (24%), Positives = 86/182 (47%), Gaps = 34/182 (19%)

Query  351  LEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSS  410
            L +L  +L+  FS     R + FT +R+++H L L +Q   G+   +  ++   G G   
Sbjct  493  LVVLHLVLEMGFS-----RVLCFTNSRENSHRLFLLVQAFGGVDVAEFSSR--YGPGQ--  543

Query  411  QSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARG  470
                     ++ ++++F+ G + LL++T     G+D+    +VV Y       + V   G
Sbjct  544  ---------RRMILKQFEQGKIQLLISTDATARGIDVQGVELVVNYDAPQYLRTYVHRVG  594

Query  471  R-ARADQSVYAF--------------VATEGSRELKR-ELINEALETLMEQAVAAVQKMD  514
            R ARA ++  AF              +   G+ EL+R EL ++ L+ L+ +   A+ +++
Sbjct  595  RTARAGKTGQAFTLLLKVQERRFLRMLTEAGAPELQRHELSSKLLQPLVPRYEEALSQLE  654

Query  515  QA  516
            ++
Sbjct  655  ES  656


>sp|Q9C718|RH20_ARATH DEAD-box ATP-dependent RNA helicase 20 OS=Arabidopsis 
thaliana OX=3702 GN=RH20 PE=2 SV=1
Length=501

 Score = 43.1 bits (100),  Expect = 0.009, Method: Compositional matrix adjust.
 Identities = 25/84 (30%), Positives = 41/84 (49%), Gaps = 4/84 (5%)

Query  416  TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY---GLLTNEISMVQARGRA  472
            +Q ++  V+ +F+ G   ++ AT VA  GLD+     V+ Y   G L + +  +   GRA
Sbjct  379  SQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRA  438

Query  473  RADQSVYAFVATEGSRELKRELIN  496
             A  + Y F     +R   +EL N
Sbjct  439  GAKGTAYTFFTVANAR-FAKELTN  461


>sp|B5FZY7|IF4A3_TAEGU Eukaryotic initiation factor 4A-III OS=Taeniopygia 
guttata OX=59729 GN=EIF4A3 PE=2 SV=1
Length=410

 Score = 42.7 bits (99),  Expect = 0.009, Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 37/64 (58%), Gaps = 0/64 (0%)

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
            SS    M Q++++ ++++F+ G   +L++T V   GLD+P  ++++ Y L  N    +  
Sbjct  304  SSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHR  363

Query  469  RGRA  472
             GR+
Sbjct  364  IGRS  367


>sp|B5DG42|IF4A3_SALSA Eukaryotic initiation factor 4A-III OS=Salmo 
salar OX=8030 GN=eif4a3 PE=2 SV=1
Length=406

 Score = 42.7 bits (99),  Expect = 0.009, Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 37/64 (58%), Gaps = 0/64 (0%)

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
            SS    M Q++++ ++++F+ G   +L++T V   GLD+P  ++++ Y L  N    +  
Sbjct  300  SSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHR  359

Query  469  RGRA  472
             GR+
Sbjct  360  IGRS  363


>sp|O42226|I4A3B_XENLA Eukaryotic initiation factor 4A-III-B OS=Xenopus 
laevis OX=8355 GN=eif4a3-b PE=2 SV=1
Length=414

 Score = 42.7 bits (99),  Expect = 0.009, Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 37/64 (58%), Gaps = 0/64 (0%)

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
            SS    M Q++++ ++++F+ G   +L++T V   GLD+P  ++++ Y L  N    +  
Sbjct  308  SSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHR  367

Query  469  RGRA  472
             GR+
Sbjct  368  IGRS  371


>sp|Q91VC3|IF4A3_MOUSE Eukaryotic initiation factor 4A-III OS=Mus 
musculus OX=10090 GN=Eif4a3 PE=1 SV=3
Length=411

 Score = 42.7 bits (99),  Expect = 0.009, Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 37/64 (58%), Gaps = 0/64 (0%)

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
            SS    M Q++++ ++++F+ G   +L++T V   GLD+P  ++++ Y L  N    +  
Sbjct  305  SSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHR  364

Query  469  RGRA  472
             GR+
Sbjct  365  IGRS  368


>sp|Q6C024|PRP28_YARLI Pre-mRNA-splicing ATP-dependent RNA helicase 
PRP28 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) 
OX=284591 GN=PRP28 PE=3 SV=1
Length=575

 Score = 43.1 bits (100),  Expect = 0.009, Method: Compositional matrix adjust.
 Identities = 28/97 (29%), Positives = 52/97 (54%), Gaps = 5/97 (5%)

Query  377  RQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ--EVIQKFQDGTLNL  434
            RQ    ++++L  ++  + V   +  L+ AG  +   H  ++ +Q  + +Q  + G +++
Sbjct  428  RQYRPPIVVFLNYKRDCEAV---SDALVAAGWRTAIIHGGKQQEQREQAVQHLKRGAVDV  484

Query  435  LVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
            LVAT VA  GLDIP+ ++VV + +  N  S     GR
Sbjct  485  LVATDVAGRGLDIPNVSLVVNFQMANNIESYTHRIGR  521


>sp|Q2GID5|UVRB_ANAPZ UvrABC system protein B OS=Anaplasma phagocytophilum 
(strain HZ) OX=212042 GN=uvrB PE=3 SV=1
Length=653

 Score = 43.1 bits (100),  Expect = 0.009, Method: Compositional matrix adjust.
 Identities = 20/59 (34%), Positives = 36/59 (61%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ ++I + + G +++L+  ++  EGLDIP C +V      + G L +E S+VQ  GRA
Sbjct  482  ERMDIIAQLRTGEIDVLIGVNLLREGLDIPECALVCILDADKEGFLRSETSLVQTIGRA  540


>sp|Q54IV3|DDX42_DICDI Probable ATP-dependent RNA helicase ddx42 
OS=Dictyostelium discoideum OX=44689 GN=ddx42 PE=3 SV=1
Length=986

 Score = 43.1 bits (100),  Expect = 0.009, Method: Compositional matrix adjust.
 Identities = 19/40 (48%), Positives = 27/40 (68%), Gaps = 0/40 (0%)

Query  417  QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY  456
            Q ++ + IQ F++G +N+L+AT VA  GLDIP    VV Y
Sbjct  586  QIERSQTIQTFKEGKINILIATDVAARGLDIPLIKNVVNY  625


>sp|Q3B8Q2|IF4A3_RAT Eukaryotic initiation factor 4A-III OS=Rattus 
norvegicus OX=10116 GN=Eif4a3 PE=1 SV=1
Length=411

 Score = 42.7 bits (99),  Expect = 0.009, Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 37/64 (58%), Gaps = 0/64 (0%)

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
            SS    M Q++++ ++++F+ G   +L++T V   GLD+P  ++++ Y L  N    +  
Sbjct  305  SSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHR  364

Query  469  RGRA  472
             GR+
Sbjct  365  IGRS  368


>sp|A6M931|IF4A3_PIG Eukaryotic initiation factor 4A-III OS=Sus 
scrofa OX=9823 GN=EIF4A3 PE=2 SV=1
Length=411

 Score = 42.7 bits (99),  Expect = 0.009, Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 37/64 (58%), Gaps = 0/64 (0%)

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
            SS    M Q++++ ++++F+ G   +L++T V   GLD+P  ++++ Y L  N    +  
Sbjct  305  SSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHR  364

Query  469  RGRA  472
             GR+
Sbjct  365  IGRS  368


>sp|Q2NL22|IF4A3_BOVIN Eukaryotic initiation factor 4A-III OS=Bos 
taurus OX=9913 GN=EIF4A3 PE=2 SV=3
Length=411

 Score = 42.7 bits (99),  Expect = 0.009, Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 37/64 (58%), Gaps = 0/64 (0%)

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
            SS    M Q++++ ++++F+ G   +L++T V   GLD+P  ++++ Y L  N    +  
Sbjct  305  SSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHR  364

Query  469  RGRA  472
             GR+
Sbjct  365  IGRS  368


>sp|Q4R3Q1|IF4A3_MACFA Eukaryotic initiation factor 4A-III OS=Macaca 
fascicularis OX=9541 GN=EIF4A3 PE=2 SV=3
Length=411

 Score = 42.7 bits (99),  Expect = 0.010, Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 37/64 (58%), Gaps = 0/64 (0%)

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
            SS    M Q++++ ++++F+ G   +L++T V   GLD+P  ++++ Y L  N    +  
Sbjct  305  SSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHR  364

Query  469  RGRA  472
             GR+
Sbjct  365  IGRS  368


>sp|P38919|IF4A3_HUMAN Eukaryotic initiation factor 4A-III OS=Homo 
sapiens OX=9606 GN=EIF4A3 PE=1 SV=4
Length=411

 Score = 42.7 bits (99),  Expect = 0.010, Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 37/64 (58%), Gaps = 0/64 (0%)

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
            SS    M Q++++ ++++F+ G   +L++T V   GLD+P  ++++ Y L  N    +  
Sbjct  305  SSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHR  364

Query  469  RGRA  472
             GR+
Sbjct  365  IGRS  368


>sp|A1CQA9|PRP5_ASPCL Pre-mRNA-processing ATP-dependent RNA helicase 
prp5 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 
513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 
GN=prp5 PE=3 SV=1
Length=1192

 Score = 43.1 bits (100),  Expect = 0.010, Method: Compositional matrix adjust.
 Identities = 48/174 (28%), Positives = 75/174 (43%), Gaps = 25/174 (14%)

Query  347  ENPKLEMLEKILQRQFS--SSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI  404
            E+ K   L +IL   +S  ++   R +IF   +++A +LL  L ++              
Sbjct  787  EDTKFVRLLEILGNLYSDDANEDARSLIFVERQEAADALLRELMRK--------------  832

Query  405  GAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---L  459
              G    S H    Q D+   I+ F+ G   +L+ATSVA  GLD+    +VV Y     L
Sbjct  833  --GYPCMSIHGGKDQIDRDSTIEDFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHL  890

Query  460  TNEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM  513
             + +      GRA    +   F+  E  +E     I +AL+   +Q    VQKM
Sbjct  891  EDYVHRAGRTGRAGNTGTAVTFLTEE--QERYSVDIAKALKQSGQQVPEPVQKM  942


>sp|Q755A5|DBP3_EREGS ATP-dependent RNA helicase DBP3 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=DBP3 PE=3 SV=1
Length=535

 Score = 42.7 bits (99),  Expect = 0.010, Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 45/85 (53%), Gaps = 4/85 (5%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL-LTNE--ISMVQARGR  471
            ++Q+ + + + +F+ GT NLL+AT VA  GLDIP+   V+     LT E  +  +   GR
Sbjct  405  LSQQQRTQALSEFKAGTANLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGR  464

Query  472  ARADQSVYAFVATEGSRELKRELIN  496
            A A    +    TE  + L   L+N
Sbjct  465  AGATGVAHTLF-TEQEKHLAGALVN  488


>sp|Q8H136|RH14_ARATH DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis 
thaliana OX=3702 GN=RH14 PE=1 SV=2
Length=619

 Score = 42.7 bits (99),  Expect = 0.010, Method: Compositional matrix adjust.
 Identities = 41/142 (29%), Positives = 61/142 (43%), Gaps = 21/142 (15%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K   LE+IL+ Q   S     IIF  T++    L   L +Q G   +          G+ 
Sbjct  389  KQRRLEQILRSQEPGSKV---IIFCSTKRMCDQLTRNLTRQFGAAAIH---------GDK  436

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMV  466
            SQ     +RD   V+ +F+ G   +LVAT VA  GLD+     VV Y     + + +  +
Sbjct  437  SQP----ERDN--VLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRI  490

Query  467  QARGRARADQSVYAFVATEGSR  488
               GRA A    + F   + S+
Sbjct  491  GRTGRAGATGQAFTFFGDQDSK  512


 Score = 33.9 bits (76),  Expect = 6.1, Method: Compositional matrix adjust.
 Identities = 37/139 (27%), Positives = 58/139 (42%), Gaps = 17/139 (12%)

Query  3    LRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVD-----GAKVVVLVNRV  57
            +++  W +   A++G++I+    TG+GKT         HL+ +      G  ++VL    
Sbjct  184  IQAQSWPI---AMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTR  240

Query  58   HLVTQHGEE---FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP  114
             L TQ  EE   F R    R + T L G          L R  D+++ T   L   L   
Sbjct  241  ELATQIQEEAVKFGR--SSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDIL---  295

Query  115  EEEEHVELTVFSLIVVDEC  133
             E   + L   S +V+DE 
Sbjct  296  -EMRRISLRQISYLVLDEA  313


>sp|Q0DLB9|RH17_ORYSJ DEAD-box ATP-dependent RNA helicase 17 OS=Oryza 
sativa subsp. japonica OX=39947 GN=RH17 PE=2 SV=2
Length=591

 Score = 42.7 bits (99),  Expect = 0.011, Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 3/110 (3%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSA---HSLLLWLQQQQGLQTVDIRAQLLIGA  406
            +L +L  IL+  F    S + ++F  T  S    H++L  L+   GLQ    + Q  I  
Sbjct  306  RLAILLTILKSLFERQLSHKVVVFLSTCDSVDFHHTVLSQLEWSPGLQLDTDKKQKFISC  365

Query  407  GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY  456
                   +M Q D+++    F      +LV+T VA  GLD P    +++Y
Sbjct  366  KVFRLHGNMDQDDRKKSFLGFSSEKSAILVSTDVAARGLDFPKVKCIIQY  415


>sp|O22907|RH24_ARATH DEAD-box ATP-dependent RNA helicase 24 OS=Arabidopsis 
thaliana OX=3702 GN=RH24 PE=1 SV=2
Length=760

 Score = 42.7 bits (99),  Expect = 0.011, Method: Compositional matrix adjust.
 Identities = 35/113 (31%), Positives = 52/113 (46%), Gaps = 17/113 (15%)

Query  395  TVD-IRAQLLIGA-------GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLD  446
            TVD I AQL + +       G+  Q++ M      E +QKF+ G  ++L+AT VA  GLD
Sbjct  485  TVDEIEAQLTLNSFKVAALHGDKDQASRM------ETLQKFKSGVHHVLIATDVAARGLD  538

Query  447  IPHCNVVVRYGLLTN---EISMVQARGRARADQSVYAFVATEGSRELKRELIN  496
            I     VV Y +  +    +  +   GRA     V   + T+       EL+N
Sbjct  539  IKSLKTVVNYDIAKDMDMHVHRIGRTGRAGDRDGVAYTLVTQREARFAGELVN  591


>sp|Q553B1|DDX46_DICDI ATP-dependent RNA helicase ddx46 OS=Dictyostelium 
discoideum OX=44689 GN=helB1 PE=2 SV=1
Length=1151

 Score = 42.7 bits (99),  Expect = 0.011, Method: Compositional matrix adjust.
 Identities = 36/126 (29%), Positives = 56/126 (44%), Gaps = 11/126 (9%)

Query  374  TRTRQSAHSLLLWLQQQQGL------QTVDIRAQLLIGAGNSSQSTHMT--QRDQQEVIQ  425
            TR R+    L +W  + Q L      +T D   + L  +     S H +  Q D+ E I 
Sbjct  741  TRFRRLIELLSIWYHKGQILIFTNRQETTDNLYRQLSNSQYQCLSLHGSKDQTDRDETIS  800

Query  426  KFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGRARADQSVYAFV  482
             F++    +L+AT +A  GLDI   N+VV +     L + +  V   GRA    + Y F+
Sbjct  801  DFKNKVKTILIATPLASRGLDIKDLNLVVNFDCPDHLEDYVHRVGRTGRAGNRGTAYTFI  860

Query  483  ATEGSR  488
              +  R
Sbjct  861  TPDEER  866


>sp|Q6C9P3|DBP3_YARLI ATP-dependent RNA helicase DBP3 OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DBP3 PE=3 
SV=1
Length=532

 Score = 42.4 bits (98),  Expect = 0.012, Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 6/96 (6%)

Query  405  GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL-LTNE-  462
            G G ++    ++Q+ + + + +F+ G  N+L+AT VA  GLDIP+  +V+     LT E 
Sbjct  392  GYGVAAIHGDLSQQQRTKALDEFKKGEKNILLATDVAARGLDIPNVKLVINLTFPLTVED  451

Query  463  -ISMVQARGRA-RADQSVYAFVATEGSRELKRELIN  496
             +  +   GRA +  Q++  F  TE  + L   LIN
Sbjct  452  YVHRIGRTGRAGKTGQAITLF--TEHEKHLSGALIN  485


>sp|A5DDF4|PRP5_PICGU Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Meyerozyma guilliermondii (strain ATCC 6260 / 
CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 
GN=PRP5 PE=3 SV=2
Length=862

 Score = 42.7 bits (99),  Expect = 0.013, Method: Compositional matrix adjust.
 Identities = 44/152 (29%), Positives = 75/152 (49%), Gaps = 23/152 (15%)

Query  350  KLEMLEKILQRQFSSSNSPRG--IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG  407
            KL+ L KI+  +FS  + P G  +IF   +++A  L++ L   Q      I   ++ G  
Sbjct  505  KLQALLKIVD-EFSVED-PEGKILIFVDKQEAADDLMVRLLNNQ------ISCIVIHGGK  556

Query  408  NSSQSTHMTQRDQQEVIQKFQDGT-LNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEI  463
            +        Q D++  I++F D   L +L+ATS+A  GLD+   N+V+ Y     + + +
Sbjct  557  D--------QVDRKHAIKQFSDKNGLRVLIATSIAARGLDVRGLNLVINYDAPSHMEDYV  608

Query  464  SMVQARGRARADQSVYAFVATEGSRELKRELI  495
              V   GRA A  +    V +   RE+ R+L+
Sbjct  609  HRVGRTGRAGATGTAVTLVLSSQEREI-RDLV  639


>sp|Q59LU0|DBP2_CANAL ATP-dependent RNA helicase DBP2 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DBP2 
PE=3 SV=2
Length=562

 Score = 42.4 bits (98),  Expect = 0.013, Method: Compositional matrix adjust.
 Identities = 30/113 (27%), Positives = 59/113 (52%), Gaps = 11/113 (10%)

Query  417  QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY---GLLTNEISMVQARGRAR  473
            Q ++  V+ +F+ G  +++VAT VA  G+D+     V+ Y   G + + +  +   GR  
Sbjct  410  QNERDWVLDEFRKGKTSIMVATDVAARGIDVKGITHVINYDMPGNIEDYVHRIGRTGRGG  469

Query  474  ADQSVYAFVATEGSRELKREL---INEALETLMEQAVAAVQKMDQAEYQAKIR  523
            A  +  +F  TEG+ +L  +L   + EA +T+  +    +Q+ D+  Y + +R
Sbjct  470  ASGTAISFF-TEGNSKLGGDLCKIMREANQTVPPE----LQRFDRRSYGSHMR  517


>sp|Q814I2|DBPA_BACCR ATP-dependent RNA helicase DbpA OS=Bacillus 
cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 
/ NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711) OX=226900 
GN=dbpA PE=2 SV=1
Length=481

 Score = 42.4 bits (98),  Expect = 0.013, Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 33/64 (52%), Gaps = 1/64 (2%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR  473
            M Q D+ EV+  F+ G    LVAT VA  G+DI +   V+ Y +   + S V   GR  R
Sbjct  276  MVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGR  335

Query  474  ADQS  477
            A  S
Sbjct  336  AGNS  339


>sp|Q0U6X2|MAK5_PHANO ATP-dependent RNA helicase MAK5 OS=Phaeosphaeria 
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) 
OX=321614 GN=MAK5 PE=3 SV=1
Length=817

 Score = 42.7 bits (99),  Expect = 0.013, Method: Compositional matrix adjust.
 Identities = 25/66 (38%), Positives = 38/66 (58%), Gaps = 1/66 (2%)

Query  413  THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-  471
            + M Q+ +   I++F++   ++LVAT VA  GLDIP   +V+ Y L     + V   GR 
Sbjct  573  SSMAQKARLRSIERFKERPGSILVATDVAARGLDIPKVELVIHYHLPRAADTYVHRSGRT  632

Query  472  ARADQS  477
            ARA+ S
Sbjct  633  ARAEAS  638


>sp|Q1DMX8|PRP28_COCIM Pre-mRNA-splicing ATP-dependent RNA helicase 
PRP28 OS=Coccidioides immitis (strain RS) OX=246410 GN=PRP28 
PE=3 SV=2
Length=820

 Score = 42.7 bits (99),  Expect = 0.013, Method: Compositional matrix adjust.
 Identities = 32/107 (30%), Positives = 57/107 (53%), Gaps = 8/107 (7%)

Query  407  GNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
            G SS + H   TQ  ++  +   ++G  ++LVAT +A  G+D+P  ++VV + + TN  S
Sbjct  679  GYSSVTLHGSKTQEQREAALASVRNGNTDVLVATDLAGRGIDVPDVSLVVNFNMATNIES  738

Query  465  MVQARGR-ARADQSVYA--FVATEGSR---ELKRELINEALETLMEQ  505
                 GR  RA +S  A  F+  E +    +LK+ L+  ++  + E+
Sbjct  739  YTHRIGRTGRAGKSGVAITFLGNEDADVMYDLKQMLMKSSISRVPEE  785


>sp|G0SFM2|DBP2_CHATD ATP-dependent RNA helicase DBP2 OS=Chaetomium 
thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) 
OX=759272 GN=DBP2 PE=3 SV=2
Length=556

 Score = 42.4 bits (98),  Expect = 0.013, Method: Compositional matrix adjust.
 Identities = 40/149 (27%), Positives = 71/149 (48%), Gaps = 21/149 (14%)

Query  351  LEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSS  410
            ++ LEKI+    S     + +IF  T++ A  +  +L+Q  G   + I        G+  
Sbjct  365  IKHLEKIMD---SRDTQNKCLIFVGTKRVADDITRFLRQD-GWPALSIH-------GDKQ  413

Query  411  QSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE---ISMVQ  467
            Q+    +RD   V+ +F+ G   ++VAT VA  G+D+ +   V+ Y    N    I  + 
Sbjct  414  QN----ERDW--VLDQFKTGKSPIMVATDVASRGIDVRNITHVINYDYPNNSEDYIHRIG  467

Query  468  ARGRARADQSVYAFVATEGSRELKRELIN  496
              GRA A  +   F  TE +++  R+L++
Sbjct  468  RTGRAGAKGTAITFFTTENAKQ-ARDLVS  495


>sp|A3LQ55|PRP5_PICST Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Scheffersomyces stipitis (strain ATCC 58785 / 
CBS 6054 / NBRC 10063 / NRRL Y-11545) OX=322104 GN=PRP5 PE=3 
SV=2
Length=875

 Score = 42.7 bits (99),  Expect = 0.013, Method: Compositional matrix adjust.
 Identities = 37/151 (25%), Positives = 77/151 (51%), Gaps = 13/151 (9%)

Query  350  KLEMLEKILQRQFSSSNSPR--GIIFTRTRQSAHS-LLLWLQQQQGLQTVDIRAQLLIGA  406
            K+E+ EK    Q       R   I+   + +S HS +L+++++Q     + ++   L+G+
Sbjct  497  KVELFEKGESSQLEDEKFDRLLNILNVFSIESKHSKVLIFVEKQSAADDLLVK---LLGS  553

Query  407  GNSSQSTH--MTQRDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---L  459
             +   + H    Q D++  I++F  +D  +++L+ATS+A  GLD+   ++V+ Y     +
Sbjct  554  NHPCLTIHGGKDQIDRKYAIKEFSSKDSGVDILIATSIAARGLDVKGLDLVINYDPPNHM  613

Query  460  TNEISMVQARGRARADQSVYAFVATEGSREL  490
             + +  V   GRA    +   FV+++  R +
Sbjct  614  EDYVHRVGRTGRAGMKGTAITFVSSDQERSV  644


>sp|Q2HAD8|PRP5_CHAGB Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 
/ DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=PRP5 
PE=3 SV=1
Length=1064

 Score = 42.7 bits (99),  Expect = 0.013, Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 56/142 (39%), Gaps = 17/142 (12%)

Query  347  ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA  406
            E  K   L ++L   ++  +  R +IF   ++ A  LL              R  L  G 
Sbjct  659  EGKKFVRLLELLGELYADDDDVRALIFVERQEKADDLL--------------REVLRRGY  704

Query  407  GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEI  463
            G  S      Q D+   I  F+ G   +++ATSVA  GLD+    +VV Y     L + +
Sbjct  705  GCMSIHGGKDQEDRNSTISDFKKGVCPIMIATSVAARGLDVKQLKLVVNYDAPNHLEDYV  764

Query  464  SMVQARGRARADQSVYAFVATE  485
                  GRA    +   F+  E
Sbjct  765  HRAGRTGRAGNTGTAVTFITEE  786


>sp|P9WH05|DEAD_MYCTU ATP-dependent RNA helicase DeaD OS=Mycobacterium 
tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=deaD 
PE=1 SV=1
Length=563

 Score = 42.4 bits (98),  Expect = 0.014, Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 53/113 (47%), Gaps = 15/113 (13%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            I+F RT+Q+   +   L+ +              G   ++ S  + Q  ++  I   +DG
Sbjct  254  IVFVRTKQATEEIAEKLRAR--------------GFSAAAISGDVPQAQRERTITALRDG  299

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFV  482
             +++LVAT VA  GLD+   + V+ Y +  +  S V   GR  RA +S  A +
Sbjct  300  DIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALI  352


>sp|P9WH04|DEAD_MYCTO ATP-dependent RNA helicase DeaD OS=Mycobacterium 
tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=deaD 
PE=3 SV=1
Length=563

 Score = 42.4 bits (98),  Expect = 0.014, Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 53/113 (47%), Gaps = 15/113 (13%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            I+F RT+Q+   +   L+ +              G   ++ S  + Q  ++  I   +DG
Sbjct  254  IVFVRTKQATEEIAEKLRAR--------------GFSAAAISGDVPQAQRERTITALRDG  299

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFV  482
             +++LVAT VA  GLD+   + V+ Y +  +  S V   GR  RA +S  A +
Sbjct  300  DIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALI  352


>sp|A7EGG4|PRP28_SCLS1 Pre-mRNA-splicing ATP-dependent RNA helicase 
prp28 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 
1980 / Ss-1) OX=665079 GN=prp28 PE=3 SV=1
Length=816

 Score = 42.4 bits (98),  Expect = 0.014, Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 6/96 (6%)

Query  416  TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA  474
            TQ  ++  +   + G  N+LVAT +A  G+D+P  ++VV + + TN  S     GR  RA
Sbjct  687  TQEQREAALASVRSGATNVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIGRTGRA  746

Query  475  DQSVYA--FVATEGSR---ELKRELINEALETLMEQ  505
             +S  A  F+  E +    +LK+ L+  ++  + E+
Sbjct  747  GKSGVAITFLGNEDADTMYDLKQMLMKSSISRVPEE  782


>sp|Q6CJU1|DBP5_KLULA ATP-dependent RNA helicase DBP5 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 
1267 / NRRL Y-1140 / WM37) OX=284590 GN=DBP5 PE=3 SV=1
Length=469

 Score = 42.4 bits (98),  Expect = 0.014, Method: Compositional matrix adjust.
 Identities = 27/91 (30%), Positives = 48/91 (53%), Gaps = 14/91 (15%)

Query  370  GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD  429
             IIF +T+Q+A+ L   L+++          Q+ I  G+      +  +D+  +I  F++
Sbjct  320  SIIFVKTKQTANLLYAKLKKEG--------HQVSILHGD------LQSQDRDRLIDDFRE  365

Query  430  GTLNLLVATSVAEEGLDIPHCNVVVRYGLLT  460
            G   +L+ T+V   G+DIP  ++VV Y L T
Sbjct  366  GRSKVLITTNVLARGIDIPSVSMVVNYDLPT  396


>sp|P34689|GLH1_CAEEL ATP-dependent RNA helicase glh-1 OS=Caenorhabditis 
elegans OX=6239 GN=glh-1 PE=1 SV=3
Length=763

 Score = 42.4 bits (98),  Expect = 0.014, Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 35/55 (64%), Gaps = 0/55 (0%)

Query  417  QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
            QR++ E +++F++G+  +L+AT+VAE GLDI   + V+ Y +  N    +   GR
Sbjct  642  QRERSEALRQFRNGSKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGR  696


>sp|Q84UQ1|RH42_ORYSJ DEAD-box ATP-dependent RNA helicase 42 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os08g0159900 PE=2 
SV=1
Length=1049

 Score = 42.7 bits (99),  Expect = 0.014, Method: Compositional matrix adjust.
 Identities = 32/108 (30%), Positives = 54/108 (50%), Gaps = 12/108 (11%)

Query  417  QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARAD  475
            Q D++  +  F+    +LL+ATSVA  GLD+    +VV Y +  +    V   GR  RA 
Sbjct  707  QTDRESTLADFKSNVCSLLIATSVAARGLDVKELELVVNYDVPNHYEDYVHRVGRTGRAG  766

Query  476  QSVYA--FVATEGSR---------ELKRELINEALETLMEQAVAAVQK  512
            +  +A  F++ E  R         EL  + + E L+ L ++ +A V++
Sbjct  767  RKGFAVTFISEEEERYAPDLVKALELSEQAVPEDLKGLADRFMAKVKQ  814


>sp|Q09719|DBP10_SCHPO ATP-dependent RNA helicase dbp10 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=dbp10 
PE=1 SV=1
Length=848

 Score = 42.4 bits (98),  Expect = 0.014, Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 66/146 (45%), Gaps = 21/146 (14%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQ-----------SAHSLLLWLQQQQGLQTVDI  398
            KL + + +  R+  + N+P+     R R            S  S L+++  +  ++ V  
Sbjct  309  KLPLKDNVRPREIGNVNNPK----KRKRALELALKGSESGSPDSTLVFVPTKHHVEYV--  362

Query  399  RAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY  456
             ++LL+ AG S    +  + Q  +   I  F+ G  NLLV T VA  G+DIP    V+ Y
Sbjct  363  -SELLVQAGYSVSKIYGSLDQEARLNEINNFRLGKTNLLVVTDVASRGIDIPLLANVINY  421

Query  457  GLLTNEISMVQARGR-ARADQSVYAF  481
                     V   GR ARA ++ +A+
Sbjct  422  DFPPQPKVFVHRVGRTARAGRTGWAY  447


>sp|O94761|RECQ4_HUMAN ATP-dependent DNA helicase Q4 OS=Homo sapiens 
OX=9606 GN=RECQL4 PE=1 SV=2
Length=1208

 Score = 42.7 bits (99),  Expect = 0.015, Method: Compositional matrix adjust.
 Identities = 39/135 (29%), Positives = 63/135 (47%), Gaps = 18/135 (13%)

Query  398  IRAQLLIGAGNSSQST-------HMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHC  450
            + A  + G+G  +  T        M  R+++ V + F  G L ++VAT     GLD P  
Sbjct  724  LHAAWVPGSGGRAPKTTAEAYHAGMCSRERRRVQRAFMQGQLRVVVATVAFGMGLDRPDV  783

Query  451  NVVVRYGLLTNEISMVQARGRARADQS---VYAFVATEGS--RELKRELINEALETLMEQ  505
              V+  GL  +  S VQA GRA  D      + F+  +G   REL+R +  ++ + L   
Sbjct  784  RAVLHLGLPPSFESYVQAVGRAGRDGQPAHCHLFLQPQGEDLRELRRHVHADSTDFL---  840

Query  506  AVAAVQKMDQAEYQA  520
               AV+++ Q  + A
Sbjct  841  ---AVKRLVQRVFPA  852


>sp|Q5B3H7|DBP8_EMENI ATP-dependent RNA helicase dbp8 OS=Emericella 
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 
194 / M139) OX=227321 GN=dbp8 PE=3 SV=1
Length=525

 Score = 42.4 bits (98),  Expect = 0.015, Method: Compositional matrix adjust.
 Identities = 34/111 (31%), Positives = 52/111 (47%), Gaps = 19/111 (17%)

Query  370  GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKF  427
             I+FT T +SA                D+  +LL   G+   S H  + Q ++   + +F
Sbjct  353  AIVFTNTTKSA----------------DLLERLLRSLGHRVTSLHSLLPQSERNSNLARF  396

Query  428  QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQS  477
            +     +LVAT VA  GLDIP  ++VV + +  N    V   GR ARA ++
Sbjct  397  RASAARVLVATDVASRGLDIPSVSLVVNFEVPRNPDDYVHRVGRTARAGRT  447


>sp|Q6H874|RH47A_ORYSJ DEAD-box ATP-dependent RNA helicase 47A 
OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0636300 PE=2 
SV=1
Length=573

 Score = 42.4 bits (98),  Expect = 0.015, Method: Compositional matrix adjust.
 Identities = 17/49 (35%), Positives = 28/49 (57%), Gaps = 0/49 (0%)

Query  423  VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
            V++KF+DG   +LV   ++  GLD+P C++V+   L T+        GR
Sbjct  473  VLKKFKDGEFRVLVTNELSARGLDVPECDLVINLDLPTDSTHYAHRAGR  521


>sp|Q2YUH3|CSHA_STAAB DEAD-box ATP-dependent RNA helicase CshA 
OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) OX=273036 
GN=cshA PE=3 SV=1
Length=506

 Score = 42.4 bits (98),  Expect = 0.015, Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 41/79 (52%), Gaps = 2/79 (3%)

Query  396  VDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV  453
            VD     LI  G  ++  H  +TQ  + EV++KF++  +N+LVAT VA  GLDI   + V
Sbjct  253  VDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHV  312

Query  454  VRYGLLTNEISMVQARGRA  472
              + +  +  S     GR 
Sbjct  313  YNFDIPQDTESYTHRIGRT  331


>sp|P24346|DDX3_XENLA Putative ATP-dependent RNA helicase an3 
OS=Xenopus laevis OX=8355 GN=an3 PE=2 SV=1
Length=697

 Score = 42.4 bits (98),  Expect = 0.015, Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 5/90 (6%)

Query  384  LLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVA  441
            L++++ ++G    D     L   G +  S H   +QRD++E + +F+ G   +LVAT+VA
Sbjct  486  LVFVETKKG---ADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVA  542

Query  442  EEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
              GLDI +   V+ + L ++    V   GR
Sbjct  543  ARGLDISNVKHVINFDLPSDIEEYVHRIGR  572


>sp|P37474|MFD_BACSU Transcription-repair-coupling factor OS=Bacillus 
subtilis (strain 168) OX=224308 GN=mfd PE=3 SV=1
Length=1177

 Score = 42.4 bits (98),  Expect = 0.015, Method: Compositional matrix adjust.
 Identities = 22/69 (32%), Positives = 43/69 (62%), Gaps = 2/69 (3%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS-MVQARGR-A  472
            MT+ + + V+  F +G  ++LV+T++ E G+DIP+ N ++ +      +S + Q RGR  
Sbjct  868  MTENELETVMLSFLEGESDVLVSTTIIETGVDIPNVNTLIVFDADKMGLSQLYQLRGRVG  927

Query  473  RADQSVYAF  481
            R+++  YA+
Sbjct  928  RSNRVAYAY  936


>sp|Q755N4|DBP2_EREGS ATP-dependent RNA helicase DBP2 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=DBP2 PE=3 SV=2
Length=557

 Score = 42.4 bits (98),  Expect = 0.015, Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 62/131 (47%), Gaps = 22/131 (17%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE--VIQKFQ  428
            IIF  T+++   +  +L+Q                 G  + + H  ++ Q+   V+ +F+
Sbjct  365  IIFASTKRTCDEITSYLRQD----------------GWPALAIHGDKQQQERDWVLNEFR  408

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRY---GLLTNEISMVQARGRARADQSVYAFVATE  485
             G   ++VAT VA  G+D+   N V+ Y   G + + +  +   GRA A  +  +F  TE
Sbjct  409  TGRSPIMVATDVAARGIDVKGINFVINYDMPGNIEDYVHRIGRTGRAGATGTAISFF-TE  467

Query  486  GSRELKRELIN  496
             ++ L  +LI+
Sbjct  468  ANKTLGAQLIS  478


>sp|Q9ZRZ8|RH28_ARATH DEAD-box ATP-dependent RNA helicase 28 OS=Arabidopsis 
thaliana OX=3702 GN=RH28 PE=2 SV=1
Length=789

 Score = 42.4 bits (98),  Expect = 0.015, Method: Compositional matrix adjust.
 Identities = 39/122 (32%), Positives = 58/122 (48%), Gaps = 16/122 (13%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            IIF+ T+Q+AH L +      GL    ++A  L G        ++TQ  + + ++ F+  
Sbjct  416  IIFSGTKQAAHRLKILF----GL--AGLKAAELHG--------NLTQAQRLDSLELFRKQ  461

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFV-ATEGSR  488
             ++ L+AT VA  GLDI     V+ Y       S V   GR ARA +  YA    T+  R
Sbjct  462  EVDFLIATDVAARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFVTDSDR  521

Query  489  EL  490
             L
Sbjct  522  SL  523


>sp|Q6CZD9|RHLB_PECAS ATP-dependent RNA helicase RhlB OS=Pectobacterium 
atrosepticum (strain SCRI 1043 / ATCC BAA-672) OX=218491 
GN=rhlB PE=3 SV=3
Length=430

 Score = 42.0 bits (97),  Expect = 0.016, Method: Compositional matrix adjust.
 Identities = 37/133 (28%), Positives = 60/133 (45%), Gaps = 19/133 (14%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +L+ ++      R IIF  T+     +  W      L     R  LL G    
Sbjct  243  KMRLLQTLLEEEWPD----RCIIFANTKHRCEDV--WGH----LAADGHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q+ +  ++++F  G++++LVAT VA  GL IP    V  Y L  +    V   
Sbjct  289  ----DVAQKKRLRILEEFTQGSIDILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRI  344

Query  470  GR-ARADQSVYAF  481
            GR  RA QS ++ 
Sbjct  345  GRTGRAGQSGFSI  357


>sp|Q5HPW4|RECG_STAEQ ATP-dependent DNA helicase RecG OS=Staphylococcus 
epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 
17069 / CCUG 31568 / BM 3577 / RP62A) OX=176279 GN=recG PE=3 
SV=1
Length=682

 Score = 42.4 bits (98),  Expect = 0.016, Method: Compositional matrix adjust.
 Identities = 24/71 (34%), Positives = 43/71 (61%), Gaps = 10/71 (14%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQAR  469
            MT  D+ +V+QKF +  +++LV+T+V E G+++P+   ++     R+GL T    + Q R
Sbjct  514  MTAEDKDQVMQKFSEHEIDILVSTTVVEVGVNVPNATFMMIYDADRFGLST----LHQLR  569

Query  470  GR-ARADQSVY  479
            GR  R++   Y
Sbjct  570  GRVGRSEHQSY  580


>sp|Q0V1Z7|DRS1_PHANO ATP-dependent RNA helicase DRS1 OS=Phaeosphaeria 
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) 
OX=321614 GN=DRS1 PE=3 SV=1
Length=808

 Score = 42.4 bits (98),  Expect = 0.016, Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 75/157 (48%), Gaps = 20/157 (13%)

Query  344  HGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLL  403
             G E+ +L  L  I ++ ++     R IIF R ++ AH + +                 L
Sbjct  511  QGKEDKRLAYLMYICEKIYTE----RVIIFFRQKKEAHRVRVVF--------------AL  552

Query  404  IGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY-GLLTNE  462
             G   S    +M+Q  + + ++ F+ G  + L+AT VA  GLDI + + V+ Y    ++E
Sbjct  553  CGLKASELHGNMSQEQRIQAVEAFRSGKSSYLLATDVASRGLDIKNVSTVINYEAPQSHE  612

Query  463  ISMVQARGRARADQSVYA-FVATEGSRELKRELINEA  498
            I + +    ARA +S  A  +A E  R++ ++ + ++
Sbjct  613  IYLHRVGRTARAGRSGRACTLAAEPDRKVVKQAVKQS  649


>sp|A4R8G3|DBP8_PYRO7 ATP-dependent RNA helicase DBP8 OS=Pyricularia 
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 
GN=DBP8 PE=3 SV=3
Length=579

 Score = 42.4 bits (98),  Expect = 0.016, Method: Compositional matrix adjust.
 Identities = 27/66 (41%), Positives = 35/66 (53%), Gaps = 3/66 (5%)

Query  412  STHMTQRDQQEV--IQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
            S H   R QQ +  + +F+     +LVAT VA  GLDIP  +VVV Y L  +    +   
Sbjct  432  SLHSKLRQQQRIDNLGRFRASAARILVATDVASRGLDIPEVSVVVNYDLPRDPDDYIHRV  491

Query  470  GR-ARA  474
            GR ARA
Sbjct  492  GRTARA  497


>sp|Q5B5E7|RRP3_EMENI ATP-dependent rRNA helicase rrp3 OS=Emericella 
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / 
NRRL 194 / M139) OX=227321 GN=rrp3 PE=3 SV=1
Length=465

 Score = 42.0 bits (97),  Expect = 0.016, Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 51/112 (46%), Gaps = 15/112 (13%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            IIFT T      +   L+   G   + +  QL       SQS  +        + KF+  
Sbjct  289  IIFTTTVHETQRVAFMLRAL-GFGAIPLHGQL-------SQSARLG------ALGKFRSR  334

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF  481
            + ++LVAT VA  GLDIP  +VV  + L  +  + +   GR ARA +S  A 
Sbjct  335  SRDILVATDVAARGLDIPSVDVVFNFDLPMDSKTYIHRVGRTARAGKSGVAI  386


>sp|A3LSN3|DRS1_PICST ATP-dependent RNA helicase DRS1 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=DRS1 PE=3 SV=3
Length=741

 Score = 42.4 bits (98),  Expect = 0.016, Method: Compositional matrix adjust.
 Identities = 35/148 (24%), Positives = 67/148 (45%), Gaps = 20/148 (14%)

Query  358  LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ  417
            L ++   +   R ++F   ++SAH L + L               L+G   S     +TQ
Sbjct  462  LLKKLDPAQQSRIVVFVSRKESAHKLRIVLG--------------LLGMKVSELHGSLTQ  507

Query  418  RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL-LTNEISM--VQARGRARA  474
              +   +  F+   + +L+ T +A  GLDIP   +V+ Y +  ++E+ +  V    RA  
Sbjct  508  EQRLNNVNDFKKLIVPVLICTDLAARGLDIPKIEIVINYDMPKSHEVYLHRVGRTARAGR  567

Query  475  DQSVYAFVATEGSRELKRELINEALETL  502
            D +  +FV    S    R ++ +A+++L
Sbjct  568  DGTSISFVGESTS---DRNIVKDAIKSL  592


>sp|Q6GEZ3|CSHA_STAAR DEAD-box ATP-dependent RNA helicase CshA 
OS=Staphylococcus aureus (strain MRSA252) OX=282458 GN=cshA 
PE=3 SV=1
Length=506

 Score = 42.0 bits (97),  Expect = 0.017, Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 41/79 (52%), Gaps = 2/79 (3%)

Query  396  VDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV  453
            VD     LI  G  ++  H  +TQ  + EV++KF++  +N+LVAT VA  GLDI   + V
Sbjct  253  VDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHV  312

Query  454  VRYGLLTNEISMVQARGRA  472
              + +  +  S     GR 
Sbjct  313  YNFDIPQDTESYTHRIGRT  331


>sp|A4RN46|PRP5_PYRO7 Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Pyricularia oryzae (strain 70-15 / ATCC MYA-4617 
/ FGSC 8958) OX=242507 GN=PRP5 PE=3 SV=1
Length=1012

 Score = 42.4 bits (98),  Expect = 0.017, Method: Compositional matrix adjust.
 Identities = 38/142 (27%), Positives = 55/142 (39%), Gaps = 17/142 (12%)

Query  347  ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA  406
            E  K   L ++L   +   +  R +IF   ++ A  LL              R  L  G 
Sbjct  608  EKSKFNRLLELLGELYKDDDDVRSLIFVERQEKADELL--------------RELLRKGY  653

Query  407  GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEI  463
            G  S      Q D+   I  F+ G   +++ATSVA  GLD+    +VV Y     L + +
Sbjct  654  GCMSLHGGKDQVDRDSTISDFKSGVCPVMIATSVAARGLDVKQLKLVVNYDAPNHLEDYV  713

Query  464  SMVQARGRARADQSVYAFVATE  485
                  GRA    +   FV  E
Sbjct  714  HRAGRTGRAGNTGTAVTFVTEE  735


>sp|Q7A0D2|CSHA_STAAW DEAD-box ATP-dependent RNA helicase CshA 
OS=Staphylococcus aureus (strain MW2) OX=196620 GN=cshA PE=3 
SV=1
Length=506

 Score = 42.0 bits (97),  Expect = 0.017, Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 41/79 (52%), Gaps = 2/79 (3%)

Query  396  VDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV  453
            VD     LI  G  ++  H  +TQ  + EV++KF++  +N+LVAT VA  GLDI   + V
Sbjct  253  VDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHV  312

Query  454  VRYGLLTNEISMVQARGRA  472
              + +  +  S     GR 
Sbjct  313  YNFDIPQDTESYTHRIGRT  331


>sp|Q6G7M9|CSHA_STAAS DEAD-box ATP-dependent RNA helicase CshA 
OS=Staphylococcus aureus (strain MSSA476) OX=282459 GN=cshA 
PE=3 SV=1
Length=506

 Score = 42.0 bits (97),  Expect = 0.017, Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 41/79 (52%), Gaps = 2/79 (3%)

Query  396  VDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV  453
            VD     LI  G  ++  H  +TQ  + EV++KF++  +N+LVAT VA  GLDI   + V
Sbjct  253  VDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHV  312

Query  454  VRYGLLTNEISMVQARGRA  472
              + +  +  S     GR 
Sbjct  313  YNFDIPQDTESYTHRIGRT  331


>sp|Q7A4G0|CSHA_STAAN DEAD-box ATP-dependent RNA helicase CshA 
OS=Staphylococcus aureus (strain N315) OX=158879 GN=cshA PE=1 
SV=1
Length=506

 Score = 42.0 bits (97),  Expect = 0.017, Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 41/79 (52%), Gaps = 2/79 (3%)

Query  396  VDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV  453
            VD     LI  G  ++  H  +TQ  + EV++KF++  +N+LVAT VA  GLDI   + V
Sbjct  253  VDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHV  312

Query  454  VRYGLLTNEISMVQARGRA  472
              + +  +  S     GR 
Sbjct  313  YNFDIPQDTESYTHRIGRT  331


>sp|Q99SH6|CSHA_STAAM DEAD-box ATP-dependent RNA helicase CshA 
OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) OX=158878 
GN=cshA PE=1 SV=1
Length=506

 Score = 42.0 bits (97),  Expect = 0.017, Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 41/79 (52%), Gaps = 2/79 (3%)

Query  396  VDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV  453
            VD     LI  G  ++  H  +TQ  + EV++KF++  +N+LVAT VA  GLDI   + V
Sbjct  253  VDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHV  312

Query  454  VRYGLLTNEISMVQARGRA  472
              + +  +  S     GR 
Sbjct  313  YNFDIPQDTESYTHRIGRT  331


>sp|Q5HEB9|CSHA_STAAC DEAD-box ATP-dependent RNA helicase CshA 
OS=Staphylococcus aureus (strain COL) OX=93062 GN=cshA PE=3 
SV=1
Length=506

 Score = 42.0 bits (97),  Expect = 0.017, Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 41/79 (52%), Gaps = 2/79 (3%)

Query  396  VDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV  453
            VD     LI  G  ++  H  +TQ  + EV++KF++  +N+LVAT VA  GLDI   + V
Sbjct  253  VDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHV  312

Query  454  VRYGLLTNEISMVQARGRA  472
              + +  +  S     GR 
Sbjct  313  YNFDIPQDTESYTHRIGRT  331


>sp|Q2FWH5|CSHA_STAA8 DEAD-box ATP-dependent RNA helicase CshA 
OS=Staphylococcus aureus (strain NCTC 8325 / PS 47) OX=93061 
GN=cshA PE=1 SV=1
Length=506

 Score = 42.0 bits (97),  Expect = 0.017, Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 41/79 (52%), Gaps = 2/79 (3%)

Query  396  VDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV  453
            VD     LI  G  ++  H  +TQ  + EV++KF++  +N+LVAT VA  GLDI   + V
Sbjct  253  VDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHV  312

Query  454  VRYGLLTNEISMVQARGRA  472
              + +  +  S     GR 
Sbjct  313  YNFDIPQDTESYTHRIGRT  331


>sp|Q2FF45|CSHA_STAA3 DEAD-box ATP-dependent RNA helicase CshA 
OS=Staphylococcus aureus (strain USA300) OX=367830 GN=cshA 
PE=3 SV=1
Length=506

 Score = 42.0 bits (97),  Expect = 0.017, Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 41/79 (52%), Gaps = 2/79 (3%)

Query  396  VDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV  453
            VD     LI  G  ++  H  +TQ  + EV++KF++  +N+LVAT VA  GLDI   + V
Sbjct  253  VDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHV  312

Query  454  VRYGLLTNEISMVQARGRA  472
              + +  +  S     GR 
Sbjct  313  YNFDIPQDTESYTHRIGRT  331


>sp|Q9QY16|DDX25_RAT ATP-dependent RNA helicase DDX25 OS=Rattus 
norvegicus OX=10116 GN=Ddx25 PE=1 SV=2
Length=483

 Score = 42.0 bits (97),  Expect = 0.017, Method: Compositional matrix adjust.
 Identities = 26/94 (28%), Positives = 45/94 (48%), Gaps = 14/94 (15%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            + IIF +TR++A  L + + Q               G   S  S  +T   +  +IQ+F+
Sbjct  340  QAIIFCQTRRNAKWLTVEMMQD--------------GHQVSLLSGELTVEQRASIIQRFR  385

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE  462
            DG   +L+ T+V   G+D+    +VV + L  N+
Sbjct  386  DGKEKVLITTNVCARGIDVKQVTIVVNFDLPVNQ  419


>sp|Q2U2J6|PRP5_ASPOR Pre-mRNA-processing ATP-dependent RNA helicase 
prp5 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) 
OX=510516 GN=prp5 PE=3 SV=1
Length=1186

 Score = 42.4 bits (98),  Expect = 0.017, Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 6/147 (4%)

Query  370  GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKF  427
            G +++         L+++++Q+G  T+    + L+  G    S H    Q D+   I+ F
Sbjct  796  GNLYSTDENEDARALIFVERQEGADTL---LRELMRKGYPCMSIHGGKDQIDRDSTIEDF  852

Query  428  QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEG  486
            + G   +L+ATSVA  GLD+    +VV Y    +    V   GR  RA  +  A      
Sbjct  853  KAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTE  912

Query  487  SRELKRELINEALETLMEQAVAAVQKM  513
             +E     I +AL+   +     VQKM
Sbjct  913  DQERYSVDIAKALKQSGQSVPEPVQKM  939


>sp|Q10PV9|RH47B_ORYSJ DEAD-box ATP-dependent RNA helicase 47B 
OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0219700 PE=2 
SV=1
Length=573

 Score = 42.0 bits (97),  Expect = 0.018, Method: Compositional matrix adjust.
 Identities = 17/49 (35%), Positives = 28/49 (57%), Gaps = 0/49 (0%)

Query  423  VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
            V++KF+DG   +LV   ++  GLD+P C++V+   L T+        GR
Sbjct  473  VLKKFKDGEFRVLVTNELSARGLDVPECDLVINLDLPTDSTHYAHRAGR  521


>sp|Q98I01|UVRB_RHILO UvrABC system protein B OS=Mesorhizobium 
japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099) OX=266835 
GN=uvrB PE=3 SV=1
Length=870

 Score = 42.4 bits (98),  Expect = 0.018, Method: Compositional matrix adjust.
 Identities = 20/56 (36%), Positives = 32/56 (57%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+++  + G  ++LV  ++  EGLDIP C  V      + G L +E S++Q  GRA
Sbjct  481  EILRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRA  536


>sp|Q4WEB4|FAL1_ASPFU ATP-dependent RNA helicase fal1 OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 
/ Af293) OX=330879 GN=fal1 PE=3 SV=2
Length=398

 Score = 42.0 bits (97),  Expect = 0.018, Method: Compositional matrix adjust.
 Identities = 19/64 (30%), Positives = 36/64 (56%), Gaps = 0/64 (0%)

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
            SS    M Q+++  ++Q F+ G   +L++T V   G+D+   ++V+ Y L TN  + +  
Sbjct  291  SSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHR  350

Query  469  RGRA  472
             GR+
Sbjct  351  IGRS  354


>sp|Q9QY15|DDX25_MOUSE ATP-dependent RNA helicase DDX25 OS=Mus 
musculus OX=10090 GN=Ddx25 PE=1 SV=2
Length=484

 Score = 42.0 bits (97),  Expect = 0.018, Method: Compositional matrix adjust.
 Identities = 26/94 (28%), Positives = 45/94 (48%), Gaps = 14/94 (15%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            + IIF +TR++A  L + + Q               G   S  S  +T   +  +IQ+F+
Sbjct  341  QAIIFCQTRRNAKWLTVEMMQD--------------GHQVSLLSGELTVEQRASIIQRFR  386

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE  462
            DG   +L+ T+V   G+D+    +VV + L  N+
Sbjct  387  DGKEKVLITTNVCARGIDVKQVTIVVNFDLPVNQ  420


>sp|O51568|MFD_BORBU Transcription-repair-coupling factor OS=Borreliella 
burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 
/ B31) OX=224326 GN=mfd PE=3 SV=1
Length=1125

 Score = 42.4 bits (98),  Expect = 0.018, Method: Compositional matrix adjust.
 Identities = 22/82 (27%), Positives = 42/82 (51%), Gaps = 10/82 (12%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQAR  469
            +T  + + ++  F      +L+AT++ E G+DIP+ N ++     ++GL      + Q +
Sbjct  827  LTGEEIENIMHNFIKKAYQILLATTIIENGIDIPNANTIIINNANKFGLA----QLYQLK  882

Query  470  GR-ARADQSVYAFVATEGSREL  490
            GR  R  Q  YA+   + S +L
Sbjct  883  GRVGRGSQKAYAYFLYQDSEKL  904


>sp|Q38F76|IF4A_TRYB2 Probable eukaryotic initiation factor 4A 
OS=Trypanosoma brucei brucei (strain 927/4 GUTat10.1) OX=185431 
GN=Tb09.160.3270 PE=3 SV=1
Length=404

 Score = 41.6 bits (96),  Expect = 0.018, Method: Compositional matrix adjust.
 Identities = 15/50 (30%), Positives = 35/50 (70%), Gaps = 0/50 (0%)

Query  413  THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE  462
            + M+++++++V+  F++G+  +LV T +   G+D+ H N+V+ + L TN+
Sbjct  300  SEMSKQEREKVMGTFRNGSSRVLVTTDLVARGIDVHHVNIVINFDLPTNK  349


>sp|A1C595|FAL1_ASPCL ATP-dependent RNA helicase fal1 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=fal1 PE=3 SV=1
Length=399

 Score = 41.6 bits (96),  Expect = 0.018, Method: Compositional matrix adjust.
 Identities = 19/64 (30%), Positives = 36/64 (56%), Gaps = 0/64 (0%)

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
            SS    M Q+++  ++Q F+ G   +L++T V   G+D+   ++V+ Y L TN  + +  
Sbjct  292  SSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHR  351

Query  469  RGRA  472
             GR+
Sbjct  352  IGRS  355


>sp|Q6C799|DBP8_YARLI ATP-dependent RNA helicase DBP8 OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DBP8 PE=3 
SV=1
Length=442

 Score = 42.0 bits (97),  Expect = 0.019, Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 62/138 (45%), Gaps = 8/138 (6%)

Query  372  IFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGT  431
            I T       S ++++ + Q  +T+  R  + +    +S  + M Q+++   + +F+   
Sbjct  241  ILTHPDNEKKSAIIFVNRTQTAETLR-RMLMALDVKTASLHSEMRQQERVNALGRFRAQA  299

Query  432  LNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR----ARADQSVYAFVATEGS  487
              +LVAT VA  GLDIP   +V+ + L  +    +   GR     R  QSV      + +
Sbjct  300  ARVLVATDVASRGLDIPTVEMVINFDLPADADDYIHRVGRTARAGRKGQSVSLVTERDVT  359

Query  488  RELKRELINEALETLMEQ  505
            R      I E + T ME+
Sbjct  360  RVTN---IEERVGTKMEK  374


>sp|Q6P9R1|DDX51_MOUSE ATP-dependent RNA helicase DDX51 OS=Mus 
musculus OX=10090 GN=Ddx51 PE=1 SV=1
Length=639

 Score = 42.0 bits (97),  Expect = 0.019, Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 55/115 (48%), Gaps = 14/115 (12%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            R + FT +R+++H L L  Q   G+   +  ++   G G            +++++++F+
Sbjct  479  RALCFTNSRENSHRLYLLAQAFGGVSVAEFSSRY--GPGQ-----------RKKILKQFE  525

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFV  482
             G + LL++T     G+D+    +V+ Y       + V   GR ARA ++  AF 
Sbjct  526  QGKIQLLISTDATARGIDVQGVELVINYDAPQYLRTYVHRVGRTARAGKTGQAFT  580


>sp|Q5AUL4|FAL1_EMENI ATP-dependent RNA helicase fal1 OS=Emericella 
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 
194 / M139) OX=227321 GN=fal1 PE=3 SV=1
Length=399

 Score = 41.6 bits (96),  Expect = 0.019, Method: Compositional matrix adjust.
 Identities = 19/64 (30%), Positives = 36/64 (56%), Gaps = 0/64 (0%)

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
            SS    M Q+++  ++Q F+ G   +L++T V   G+D+   ++V+ Y L TN  + +  
Sbjct  292  SSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHR  351

Query  469  RGRA  472
             GR+
Sbjct  352  IGRS  355


>sp|Q4IAA0|FAL1_GIBZE ATP-dependent RNA helicase FAL1 OS=Gibberella 
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / 
NRRL 31084 / PH-1) OX=229533 GN=FAL1 PE=3 SV=1
Length=401

 Score = 41.6 bits (96),  Expect = 0.019, Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 3/86 (3%)

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
            SS    M Q+++  ++Q F+ G   +L++T V   G+D+   ++V+ Y L +N  + +  
Sbjct  294  SSMHGDMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHR  353

Query  469  RGRA-RADQSVYA--FVATEGSRELK  491
             GR+ R  +   A  FV TE  R L+
Sbjct  354  IGRSGRFGRKGVAINFVTTEDVRILR  379


>sp|Q0CAS8|FAL1_ASPTN ATP-dependent RNA helicase fal1 OS=Aspergillus 
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=fal1 
PE=3 SV=1
Length=399

 Score = 41.6 bits (96),  Expect = 0.019, Method: Compositional matrix adjust.
 Identities = 19/64 (30%), Positives = 36/64 (56%), Gaps = 0/64 (0%)

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
            SS    M Q+++  ++Q F+ G   +L++T V   G+D+   ++V+ Y L TN  + +  
Sbjct  292  SSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHR  351

Query  469  RGRA  472
             GR+
Sbjct  352  IGRS  355


>sp|Q8NX11|RECG_STAAW ATP-dependent DNA helicase RecG OS=Staphylococcus 
aureus (strain MW2) OX=196620 GN=recG PE=3 SV=1
Length=686

 Score = 42.0 bits (97),  Expect = 0.019, Method: Compositional matrix adjust.
 Identities = 24/71 (34%), Positives = 44/71 (62%), Gaps = 10/71 (14%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQAR  469
            ++  ++ EV+QKF +  +++LV+T+V E G+++P+   ++     R+GL T    + Q R
Sbjct  518  LSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNVPNATFMMIYDADRFGLST----LHQLR  573

Query  470  GR-ARADQSVY  479
            GR  R+DQ  Y
Sbjct  574  GRVGRSDQQSY  584


>sp|Q6G9Y6|RECG_STAAS ATP-dependent DNA helicase RecG OS=Staphylococcus 
aureus (strain MSSA476) OX=282459 GN=recG PE=3 SV=1
Length=686

 Score = 42.0 bits (97),  Expect = 0.019, Method: Compositional matrix adjust.
 Identities = 24/71 (34%), Positives = 44/71 (62%), Gaps = 10/71 (14%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQAR  469
            ++  ++ EV+QKF +  +++LV+T+V E G+++P+   ++     R+GL T    + Q R
Sbjct  518  LSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNVPNATFMMIYDADRFGLST----LHQLR  573

Query  470  GR-ARADQSVY  479
            GR  R+DQ  Y
Sbjct  574  GRVGRSDQQSY  584


>sp|P64325|RECG_STAAN ATP-dependent DNA helicase RecG OS=Staphylococcus 
aureus (strain N315) OX=158879 GN=recG PE=1 SV=1
Length=686

 Score = 42.0 bits (97),  Expect = 0.019, Method: Compositional matrix adjust.
 Identities = 24/71 (34%), Positives = 44/71 (62%), Gaps = 10/71 (14%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQAR  469
            ++  ++ EV+QKF +  +++LV+T+V E G+++P+   ++     R+GL T    + Q R
Sbjct  518  LSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNVPNATFMMIYDADRFGLST----LHQLR  573

Query  470  GR-ARADQSVY  479
            GR  R+DQ  Y
Sbjct  574  GRVGRSDQQSY  584


>sp|P64324|RECG_STAAM ATP-dependent DNA helicase RecG OS=Staphylococcus 
aureus (strain Mu50 / ATCC 700699) OX=158878 GN=recG 
PE=3 SV=1
Length=686

 Score = 42.0 bits (97),  Expect = 0.019, Method: Compositional matrix adjust.
 Identities = 24/71 (34%), Positives = 44/71 (62%), Gaps = 10/71 (14%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQAR  469
            ++  ++ EV+QKF +  +++LV+T+V E G+++P+   ++     R+GL T    + Q R
Sbjct  518  LSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNVPNATFMMIYDADRFGLST----LHQLR  573

Query  470  GR-ARADQSVY  479
            GR  R+DQ  Y
Sbjct  574  GRVGRSDQQSY  584


>sp|Q2UAK1|FAL1_ASPOR ATP-dependent RNA helicase fal1 OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=fal1 
PE=3 SV=1
Length=398

 Score = 41.6 bits (96),  Expect = 0.019, Method: Compositional matrix adjust.
 Identities = 19/64 (30%), Positives = 36/64 (56%), Gaps = 0/64 (0%)

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
            SS    M Q+++  ++Q F+ G   +L++T V   G+D+   ++V+ Y L TN  + +  
Sbjct  291  SSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHR  350

Query  469  RGRA  472
             GR+
Sbjct  351  IGRS  354


>sp|A5AAE5|FAL1_ASPNC ATP-dependent RNA helicase fal1 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=fal1 PE=3 SV=2
Length=399

 Score = 41.6 bits (96),  Expect = 0.019, Method: Compositional matrix adjust.
 Identities = 19/64 (30%), Positives = 36/64 (56%), Gaps = 0/64 (0%)

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
            SS    M Q+++  ++Q F+ G   +L++T V   G+D+   ++V+ Y L TN  + +  
Sbjct  292  SSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHR  351

Query  469  RGRA  472
             GR+
Sbjct  352  IGRS  355


>sp|Q6GHK8|RECG_STAAR ATP-dependent DNA helicase RecG OS=Staphylococcus 
aureus (strain MRSA252) OX=282458 GN=recG PE=3 SV=1
Length=686

 Score = 42.0 bits (97),  Expect = 0.019, Method: Compositional matrix adjust.
 Identities = 24/71 (34%), Positives = 44/71 (62%), Gaps = 10/71 (14%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQAR  469
            ++  ++ EV+QKF +  +++LV+T+V E G+++P+   ++     R+GL T    + Q R
Sbjct  518  LSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNVPNATFMMIYDADRFGLST----LHQLR  573

Query  470  GR-ARADQSVY  479
            GR  R+DQ  Y
Sbjct  574  GRVGRSDQQSY  584


>sp|A1C6C4|DBP2_ASPCL ATP-dependent RNA helicase dbp2 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=dbp2 PE=3 SV=1
Length=549

 Score = 42.0 bits (97),  Expect = 0.019, Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 69/150 (46%), Gaps = 27/150 (18%)

Query  351  LEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSS  410
            ++ LEKI++       S + +IFT T++ A  +  +L+Q                 G  +
Sbjct  361  IKHLEKIME-----DRSNKILIFTGTKRIADEITRFLRQD----------------GWPA  399

Query  411  QSTHMTQRDQQE--VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE---ISM  465
             S H  ++ Q+   V+ +F+ G   ++VAT VA  G+D+     V+ Y    N    I  
Sbjct  400  LSIHGDKQQQERDWVLNEFKAGKSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYIHR  459

Query  466  VQARGRARADQSVYAFVATEGSRELKRELI  495
            +   GRA A  +   F  T+ S++  R+L+
Sbjct  460  IGRTGRAGAKGTAITFFTTDNSKQ-ARDLV  488


>sp|A1D071|FAL1_NEOFI ATP-dependent RNA helicase fal1 OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / 
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=fal1 
PE=3 SV=1
Length=399

 Score = 41.6 bits (96),  Expect = 0.020, Method: Compositional matrix adjust.
 Identities = 19/64 (30%), Positives = 36/64 (56%), Gaps = 0/64 (0%)

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
            SS    M Q+++  ++Q F+ G   +L++T V   G+D+   ++V+ Y L TN  + +  
Sbjct  292  SSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHR  351

Query  469  RGRA  472
             GR+
Sbjct  352  IGRS  355


>sp|Q8SR63|RRP3_ENCCU ATP-dependent rRNA helicase RRP3 OS=Encephalitozoon 
cuniculi (strain GB-M1) OX=284813 GN=RRP3 PE=3 SV=1
Length=400

 Score = 41.6 bits (96),  Expect = 0.020, Method: Compositional matrix adjust.
 Identities = 29/118 (25%), Positives = 57/118 (48%), Gaps = 12/118 (10%)

Query  372  IFTRTRQSAHSLLLWLQQQQGLQ---------TVDIRAQLLIGAGNSSQSTH--MTQRDQ  420
            +F   +    +L+  L+  QG+          T  + +  L   G  S++ H  ++Q  +
Sbjct  219  LFVAMKWKNSALVELLEMSQGMSVIVFVSMCVTARVMSLALARLGFCSEALHGELSQEKR  278

Query  421  QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQS  477
            +E ++ F++   N+LV T +   GLDI H ++V+ + +  +    +   GR ARA +S
Sbjct  279  EEAMRSFKESRFNVLVCTDLGSRGLDISHVDLVINFDVPKSGKDYIHRVGRTARAGRS  336


>sp|Q99MJ9|DDX50_MOUSE ATP-dependent RNA helicase DDX50 OS=Mus 
musculus OX=10090 GN=Ddx50 PE=2 SV=1
Length=734

 Score = 42.0 bits (97),  Expect = 0.021, Method: Compositional matrix adjust.
 Identities = 30/112 (27%), Positives = 53/112 (47%), Gaps = 15/112 (13%)

Query  361  QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ  420
            Q  S +  R IIF  T+++   + +    +Q        AQ L G         + Q  +
Sbjct  380  QVYSGSEGRAIIFCETKKNVTEMAMNPHIKQN-------AQCLHG--------DIAQSQR  424

Query  421  QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA  472
            +  ++ F++G+  +LVAT+VA  GLDIP  ++V++     +  S +   GR 
Sbjct  425  EITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRT  476


>sp|P0C2N8|DRS1_NEUCR ATP-dependent RNA helicase drs1 OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / 
DSM 1257 / FGSC 987) OX=367110 GN=drh-11 PE=3 SV=1
Length=829

 Score = 42.0 bits (97),  Expect = 0.021, Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 57/124 (46%), Gaps = 16/124 (13%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            R IIF R ++ AH + +                 L G   +     M Q  + + ++ F+
Sbjct  540  RVIIFFRQKKIAHKMRIIFG--------------LFGLSCAELHGSMNQAQRIQSVEDFR  585

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRY-GLLTNEISMVQARGRARADQSVYAF-VATEG  486
            DG +N L+AT +A  GLDI   + V+ Y    T EI + +    ARA +S  A  +A E 
Sbjct  586  DGKVNFLLATDLASRGLDIKGVDTVINYEAPQTPEIYVHRVGRTARAGRSGTAITLAAEP  645

Query  487  SREL  490
             R++
Sbjct  646  DRKV  649


>sp|P0CQ88|PRP28_CRYNJ Pre-mRNA-splicing ATP-dependent RNA helicase 
PRP28 OS=Cryptococcus neoformans var. neoformans serotype 
D (strain JEC21 / ATCC MYA-565) OX=214684 GN=PRP28 PE=3 
SV=1
Length=738

 Score = 42.0 bits (97),  Expect = 0.022, Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 58/115 (50%), Gaps = 22/115 (19%)

Query  344  HGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLL  403
            HG E  K  ++E IL+   +    P  I+F   +++A  ++ ++QQ              
Sbjct  565  HGDEKKKARLIE-ILR---TIGLPPPIIVFVNQKKTADMVVKYVQQ--------------  606

Query  404  IGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY  456
              AG S  + H   +Q  ++  +Q  +DG +++LVAT +A  G+D+P  ++V+ +
Sbjct  607  --AGMSGVTLHSGKSQEQREAALQALRDGEISVLVATDLAGRGIDVPDVSLVINW  659


>sp|P0CQ89|PRP28_CRYNB Pre-mRNA-splicing ATP-dependent RNA helicase 
PRP28 OS=Cryptococcus neoformans var. neoformans serotype 
D (strain B-3501A) OX=283643 GN=PRP28 PE=3 SV=1
Length=738

 Score = 42.0 bits (97),  Expect = 0.022, Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 58/115 (50%), Gaps = 22/115 (19%)

Query  344  HGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLL  403
            HG E  K  ++E IL+   +    P  I+F   +++A  ++ ++QQ              
Sbjct  565  HGDEKKKARLIE-ILR---TIGLPPPIIVFVNQKKTADMVVKYVQQ--------------  606

Query  404  IGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY  456
              AG S  + H   +Q  ++  +Q  +DG +++LVAT +A  G+D+P  ++V+ +
Sbjct  607  --AGMSGVTLHSGKSQEQREAALQALRDGEISVLVATDLAGRGIDVPDVSLVINW  659


>sp|Q8YXS9|UVRB_NOSS1 UvrABC system protein B OS=Nostoc sp. (strain 
PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=uvrB PE=3 
SV=1
Length=665

 Score = 42.0 bits (97),  Expect = 0.022, Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 53/109 (49%), Gaps = 19/109 (17%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            R +I T T++ A  L  +LQ+        ++ + L    NS Q          E++Q  +
Sbjct  446  RVLITTLTKRMAEDLTEYLQEH------GVKVRYLHSEINSIQRI--------EILQDLR  491

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
             G+ ++LV  ++  EGLD+P  ++V      + G L  E S++Q  GRA
Sbjct  492  QGSFDVLVGVNLLREGLDLPEVSLVAIMDADKEGFLRAERSLIQTIGRA  540


>sp|P54475|CSHB_BACSU DEAD-box ATP-dependent RNA helicase CshB 
OS=Bacillus subtilis (strain 168) OX=224308 GN=cshB PE=1 SV=1
Length=438

 Score = 41.6 bits (96),  Expect = 0.022, Method: Compositional matrix adjust.
 Identities = 38/138 (28%), Positives = 60/138 (43%), Gaps = 19/138 (14%)

Query  355  EKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH  414
            +K+L    S  N   GI+F  T+ +A  +                AQ L G G      H
Sbjct  233  DKLLFDIMSHLNPYLGIVFANTKNTADHI----------------AQYLTGKGMKIGLLH  276

Query  415  --MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-  471
              +T R++++V+++  D     ++AT +A  G+DI   + V+ Y L  +    V   GR 
Sbjct  277  GGLTPRERKKVMKQINDLEFTYIIATDLAARGIDIKGVSHVINYELPDDLDFYVHRVGRT  336

Query  472  ARADQSVYAFVATEGSRE  489
            ARA  S  A    E + E
Sbjct  337  ARAGSSGQAMTIYELTDE  354


>sp|Q0INC5|RH28_ORYSJ DEAD-box ATP-dependent RNA helicase 28 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os12g0481100 PE=2 
SV=2
Length=802

 Score = 42.0 bits (97),  Expect = 0.022, Method: Compositional matrix adjust.
 Identities = 40/140 (29%), Positives = 66/140 (47%), Gaps = 16/140 (11%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            IIF+ T+ SAH L +      GL    ++A  L G        ++TQ  + E ++ F+  
Sbjct  443  IIFSGTKHSAHRLKIIF----GLS--GMKAAELHG--------NLTQAQRLEALELFKKQ  488

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFV-ATEGSR  488
             ++ L+AT VA  G+DI     V+ +    +  + +   GR ARA +  YA    T+  R
Sbjct  489  EVDFLIATDVAARGIDIVGVRTVINFSCPRDARTYLHRVGRTARAGREGYAVTFVTDDDR  548

Query  489  ELKRELINEALETLMEQAVA  508
             L + +  +A   L  + VA
Sbjct  549  SLLKAIAKKAGSQLKSRIVA  568


>sp|Q56998|UVRB_ZYMMO UvrABC system protein B OS=Zymomonas mobilis 
subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) OX=264203 
GN=uvrB PE=3 SV=2
Length=740

 Score = 41.6 bits (96),  Expect = 0.023, Method: Compositional matrix adjust.
 Identities = 20/56 (36%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + G  ++L+  ++  EGLDIP C +V      + G L +E S++Q  GRA
Sbjct  517  ELIRDLRLGVYDVLIGINLLREGLDIPECGLVAVLDADKEGFLRSETSLIQTIGRA  572


>sp|Q2TBP1|DDX25_BOVIN ATP-dependent RNA helicase DDX25 OS=Bos 
taurus OX=9913 GN=DDX25 PE=2 SV=1
Length=483

 Score = 41.6 bits (96),  Expect = 0.023, Method: Compositional matrix adjust.
 Identities = 26/94 (28%), Positives = 45/94 (48%), Gaps = 14/94 (15%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            + IIF +TR++A  L + + Q               G   S  S  +T   +  +IQ+F+
Sbjct  340  QAIIFCQTRRNAKWLTVEMMQD--------------GHQVSLLSGELTVDQRASIIQRFR  385

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE  462
            DG   +L+ T+V   G+D+    +VV + L  N+
Sbjct  386  DGKEKVLITTNVCARGIDVKQVTIVVNFDLPVNQ  419


>sp|Q9LYJ9|RH46_ARATH DEAD-box ATP-dependent RNA helicase 46 OS=Arabidopsis 
thaliana OX=3702 GN=RH46 PE=2 SV=2
Length=645

 Score = 41.6 bits (96),  Expect = 0.023, Method: Compositional matrix adjust.
 Identities = 41/142 (29%), Positives = 64/142 (45%), Gaps = 21/142 (15%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K   LE+IL+ Q   S   + IIF  T++    L   L +  G   +          G+ 
Sbjct  392  KHSRLEQILRSQEPGS---KIIIFCSTKRMCDQLARNLTRTFGAAAIH---------GDK  439

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMV  466
            SQ+    +RD  +V+ +F+ G   +LVAT VA  GLD+    VVV Y     + + +  +
Sbjct  440  SQA----ERD--DVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYDFPNGVEDYVHRI  493

Query  467  QARGRARADQSVYAFVATEGSR  488
               GRA A    Y F   + ++
Sbjct  494  GRTGRAGATGLAYTFFGDQDAK  515


>sp|Q966L9|GLH2_CAEEL ATP-dependent RNA helicase glh-2 OS=Caenorhabditis 
elegans OX=6239 GN=glh-2 PE=1 SV=1
Length=974

 Score = 42.0 bits (97),  Expect = 0.023, Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 35/55 (64%), Gaps = 0/55 (0%)

Query  417  QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
            QR++ E +++F++G+  +L+AT+VAE GLDI   + V+ Y +  N    +   GR
Sbjct  853  QRERSEALRQFRNGSKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGR  907


>sp|Q2NQB2|RHLB_SODGM ATP-dependent RNA helicase RhlB OS=Sodalis 
glossinidius (strain morsitans) OX=343509 GN=rhlB PE=3 SV=1
Length=415

 Score = 41.6 bits (96),  Expect = 0.024, Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 60/134 (45%), Gaps = 20/134 (15%)

Query  346  PENP-KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI  404
            P N  K+ +L+ +++ ++      R IIF  T+     +  W      L     R  LL 
Sbjct  238  PSNEEKMRLLQTLIEEEWPD----RCIIFANTKHRCEDI--WGH----LAADGHRVGLLT  287

Query  405  GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
            G         ++Q+ +  +++KF  G L++LVAT VA  GL IP    V  Y L  +   
Sbjct  288  G--------DVSQKRRLRILEKFTQGALDILVATDVAARGLHIPSVTHVFNYDLPDDCED  339

Query  465  MVQARGR-ARADQS  477
             V   GR  RA +S
Sbjct  340  YVHRIGRTGRAGES  353


>sp|A8GZJ0|RHLB_SHEPA ATP-dependent RNA helicase RhlB OS=Shewanella 
pealeana (strain ATCC 700345 / ANG-SQ1) OX=398579 GN=rhlB 
PE=3 SV=1
Length=436

 Score = 41.6 bits (96),  Expect = 0.024, Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 19/128 (15%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L  +L+  +      + I+F+ T+ S   +  WL+          RA LL G    
Sbjct  243  KMPLLLSLLEEDWPE----KAIVFSNTKHSCEKVWSWLEGDGH------RAGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q+ +  ++++F  G +++LVAT VA  GL I   + V  Y L  +    V   
Sbjct  289  ----DVPQKKRLRILEQFTKGDIDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRI  344

Query  470  GR-ARADQ  476
            GR  RA Q
Sbjct  345  GRTGRAGQ  352


>sp|Q55750|MFD_SYNY3 Transcription-repair-coupling factor OS=Synechocystis 
sp. (strain ATCC 27184 / PCC 6803 / Kazusa) OX=1111708 
GN=mfd PE=3 SV=1
Length=1199

 Score = 42.0 bits (97),  Expect = 0.024, Method: Compositional matrix adjust.
 Identities = 46/187 (25%), Positives = 84/187 (45%), Gaps = 34/187 (18%)

Query  400   AQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----  454
             A++ IG G       M + + +  +  F DG  ++LV T++ E GLDIP  N ++     
Sbjct  882   ARIAIGHG------QMEESELESTMLAFNDGEADILVCTTIIEAGLDIPRVNTIIVEDAQ  935

Query  455   RYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM  513
             ++GL      + Q RGR  R+    +A++     ++L  +             + A+Q+ 
Sbjct  936   KFGL----AQLYQLRGRVGRSGIQAHAWLLYPNQKQLTEK---------ARLRLRALQEF  982

Query  514   DQ--AEYQAKIRDLQQAALTK--RAAQAAQRENQRQQFPVEHVQLLCINCMVAVGHGSDL  569
              Q  + YQ   RD++   +     A Q+ Q E    +F +E +Q    + +  +  G ++
Sbjct  983   SQLGSGYQLATRDMEIRGVGNLLGAEQSGQMEAIGYEFYMEMLQ----DAIKEI-QGQEI  1037

Query  570   RKVEGTH  576
              KVE T 
Sbjct  1038  PKVEDTQ  1044


>sp|Q6CT49|PRP28_KLULA Pre-mRNA-splicing ATP-dependent RNA helicase 
PRP28 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 
2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 
GN=PRP28 PE=3 SV=1
Length=539

 Score = 41.6 bits (96),  Expect = 0.024, Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 56/124 (45%), Gaps = 14/124 (11%)

Query  349  PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN  408
            P  E   KIL + F  +     IIF   +++A     WL  +  L+    RA  L G+ +
Sbjct  370  PDEEEKLKILVKDFLPNYKAPIIIFINYKRTAD----WLFDK--LREARFRATTLHGSKS  423

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
              Q  H         +   ++G +++L+AT VA  G+DIP+ ++VV      +  S V  
Sbjct  424  QEQREHS--------LSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHR  475

Query  469  RGRA  472
             GR 
Sbjct  476  VGRT  479


>sp|Q0UY62|DBP3_PHANO ATP-dependent RNA helicase DBP3 OS=Phaeosphaeria 
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) 
OX=321614 GN=DBP3 PE=3 SV=1
Length=592

 Score = 41.6 bits (96),  Expect = 0.024, Method: Compositional matrix adjust.
 Identities = 37/121 (31%), Positives = 56/121 (46%), Gaps = 12/121 (10%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL-LTNE--ISMVQARGR  471
            ++Q  +   +  F++G + LLVAT VA  GLDIP   +V+     LT E  +  +   GR
Sbjct  462  LSQEKRSASLAAFKEGQVPLLVATDVAARGLDIPAVKLVINVTFPLTAEDYVHRIGRTGR  521

Query  472  ARADQSVYAFVATEGSRELKRELIN-------EALETLMEQAVAAVQKMDQAEYQAKIRD  524
            A  +     F  TE  + L   LIN       E  E L++     V+K +   Y A  +D
Sbjct  522  AGKEGLAITFF-TEHDKGLSGSLINVLKAANQEVPEELLKFGT-TVKKKEHGAYGAFYKD  579

Query  525  L  525
            +
Sbjct  580  V  580


>sp|P46942|DB10_NICSY ATP-dependent RNA helicase-like protein 
DB10 OS=Nicotiana sylvestris OX=4096 PE=2 SV=1
Length=607

 Score = 41.6 bits (96),  Expect = 0.025, Method: Compositional matrix adjust.
 Identities = 25/76 (33%), Positives = 39/76 (51%), Gaps = 3/76 (4%)

Query  416  TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT---NEISMVQARGRA  472
            +Q ++  V+ +F+ G   +LVAT VA  GLDI    VV+ Y   T   + +  +   GRA
Sbjct  424  SQGERDYVLSQFRAGRSPVLVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRA  483

Query  473  RADQSVYAFVATEGSR  488
             A    Y F + + S+
Sbjct  484  GASGLAYTFFSDQDSK  499


>sp|Q7ZY47|DDX42_XENLA ATP-dependent RNA helicase DDX42 OS=Xenopus 
laevis OX=8355 GN=ddx42 PE=2 SV=1
Length=947

 Score = 41.6 bits (96),  Expect = 0.025, Method: Compositional matrix adjust.
 Identities = 24/69 (35%), Positives = 36/69 (52%), Gaps = 1/69 (1%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR  473
            M Q ++ +VI  F+  ++ +LVAT VA  GLDIP    VV Y +  +  +     GR  R
Sbjct  529  MDQSERNKVISDFKKKSIPVLVATDVAARGLDIPSIKTVVNYDVARDIDTHTHRIGRTGR  588

Query  474  ADQSVYAFV  482
            A +   A+ 
Sbjct  589  AGEKGVAYT  597


>sp|Q9BQ39|DDX50_HUMAN ATP-dependent RNA helicase DDX50 OS=Homo 
sapiens OX=9606 GN=DDX50 PE=1 SV=1
Length=737

 Score = 41.6 bits (96),  Expect = 0.025, Method: Compositional matrix adjust.
 Identities = 30/112 (27%), Positives = 53/112 (47%), Gaps = 15/112 (13%)

Query  361  QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ  420
            Q  S +  R IIF  T+++   + +    +Q        AQ L G         + Q  +
Sbjct  383  QVYSGSEGRAIIFCETKKNVTEMAMNPHIKQN-------AQCLHG--------DIAQSQR  427

Query  421  QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA  472
            +  ++ F++G+  +LVAT+VA  GLDIP  ++V++     +  S +   GR 
Sbjct  428  EITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRT  479


 Score = 35.0 bits (79),  Expect = 2.5, Method: Compositional matrix adjust.
 Identities = 34/133 (26%), Positives = 61/133 (46%), Gaps = 12/133 (9%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYV----AKRHLETVDGA---KVVVLVNRVHL  59
            Q +   P  EGK++I    TG GKT + A       +R+ ET+  +   KV+VL     L
Sbjct  164  QVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKKSRSPKVLVLAPTREL  223

Query  60   VTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
              Q  ++F+ +   + +V    G    ++   H+    D+L+ T   ++  L S      
Sbjct  224  ANQVAKDFKDITR-KLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSG----R  278

Query  120  VELTVFSLIVVDE  132
            ++L+    +V+DE
Sbjct  279  LDLSKLRHVVLDE  291


>sp|P24784|DBP1_YEAST ATP-dependent RNA helicase DBP1 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DBP1 
PE=1 SV=2
Length=617

 Score = 41.6 bits (96),  Expect = 0.025, Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 61/133 (46%), Gaps = 19/133 (14%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            +IF  T++ A  L  +L  Q      + +A  + G          TQ +++  +  F+  
Sbjct  415  LIFVETKRMADQLTDFLIMQ------NFKATAIHG--------DRTQAERERALSAFKAN  460

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGRARADQSVYAFVATEGS  487
              ++LVAT+VA  GLDIP+   V+ Y L   + + +  +   GRA       +F  +   
Sbjct  461  VADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVATSFFNSNNQ  520

Query  488  RELKR--ELINEA  498
              +K   E++NEA
Sbjct  521  NIVKGLMEILNEA  533


>sp|P0CQ90|MAK5_CRYNJ ATP-dependent RNA helicase MAK5 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=MAK5 PE=3 SV=1
Length=772

 Score = 41.6 bits (96),  Expect = 0.025, Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 37/70 (53%), Gaps = 1/70 (1%)

Query  413  THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-  471
            +H+ Q+ + + + +F+     +L+AT VA  GLDIP  + VV + L     + +   GR 
Sbjct  516  SHLQQKQRLKNLDRFKSNPKGILIATDVAARGLDIPQVDHVVHFNLPRTADAYIHRSGRT  575

Query  472  ARADQSVYAF  481
            ARA    +A 
Sbjct  576  ARAQNEGFAL  585


>sp|B0TJ29|RHLB_SHEHH ATP-dependent RNA helicase RhlB OS=Shewanella 
halifaxensis (strain HAW-EB4) OX=458817 GN=rhlB PE=3 SV=1
Length=436

 Score = 41.2 bits (95),  Expect = 0.025, Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 19/128 (15%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L  +L+  +      + I+F+ T+ S   +  WL+          RA LL G    
Sbjct  243  KMPLLLSLLEEDWPE----KAIVFSNTKHSCEKVWSWLEGDGH------RAGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q+ +  ++++F  G +++LVAT VA  GL I   + V  Y L  +    V   
Sbjct  289  ----DVPQKKRLRILEQFTKGEIDILVATDVAARGLHIADVSHVYNYDLPDDCEDYVHRI  344

Query  470  GR-ARADQ  476
            GR  RA Q
Sbjct  345  GRTGRAGQ  352


>sp|F4JFJ3|Y3206_ARATH ATP-dependent DNA helicase At3g02060, chloroplastic 
OS=Arabidopsis thaliana OX=3702 GN=At3g02060 PE=2 
SV=1
Length=823

 Score = 41.6 bits (96),  Expect = 0.025, Method: Compositional matrix adjust.
 Identities = 21/68 (31%), Positives = 40/68 (59%), Gaps = 10/68 (15%)

Query  421  QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGR-ARA  474
            +E +++F  G + +L+ T++ E GLDI + N ++     ++GL      + Q RGR  RA
Sbjct  522  EETMERFAQGKIKILICTNIVESGLDIQNANTIIIQDVQQFGL----AQLYQLRGRVGRA  577

Query  475  DQSVYAFV  482
            D+  +A++
Sbjct  578  DKEAHAYL  585


>sp|P0CQ91|MAK5_CRYNB ATP-dependent RNA helicase MAK5 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=MAK5 PE=3 SV=1
Length=772

 Score = 41.6 bits (96),  Expect = 0.026, Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 37/70 (53%), Gaps = 1/70 (1%)

Query  413  THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-  471
            +H+ Q+ + + + +F+     +L+AT VA  GLDIP  + VV + L     + +   GR 
Sbjct  516  SHLQQKQRLKNLDRFKSNPKGILIATDVAARGLDIPQVDHVVHFNLPRTADAYIHRSGRT  575

Query  472  ARADQSVYAF  481
            ARA    +A 
Sbjct  576  ARAQNEGFAL  585


>sp|A6ZWD3|DBP1_YEAS7 ATP-dependent RNA helicase DBP1 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=DBP1 PE=3 SV=1
Length=617

 Score = 41.6 bits (96),  Expect = 0.026, Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 61/133 (46%), Gaps = 19/133 (14%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            +IF  T++ A  L  +L  Q      + +A  + G          TQ +++  +  F+  
Sbjct  415  LIFVETKRMADQLTDFLIMQ------NFKATAIHG--------DRTQAERERALSAFKAN  460

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGRARADQSVYAFVATEGS  487
              ++LVAT+VA  GLDIP+   V+ Y L   + + +  +   GRA       +F  +   
Sbjct  461  VADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVATSFFNSNNQ  520

Query  488  RELKR--ELINEA  498
              +K   E++NEA
Sbjct  521  NIVKGLMEILNEA  533


>sp|Q5QYF8|RHLB_IDILO ATP-dependent RNA helicase RhlB OS=Idiomarina 
loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR) OX=283942 
GN=rhlB PE=3 SV=1
Length=425

 Score = 41.2 bits (95),  Expect = 0.027, Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 59/144 (41%), Gaps = 22/144 (15%)

Query  346  PENP-KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI  404
            P  P K  +L  +++  +      + I+F  T+     +  WL   +       RA LL 
Sbjct  237  PSKPEKFPLLLTLIEEDWPD----KAIVFANTKHGCEKVHGWLVANEH------RAGLLT  286

Query  405  GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTN  461
            G         + Q+ +  +++ F +G L+ LVAT VA  GL IP    V  + L     +
Sbjct  287  G--------DVPQKKRLRILEDFAEGKLDFLVATDVAARGLHIPEVTHVYNFDLPDDCED  338

Query  462  EISMVQARGRARADQSVYAFVATE  485
             +  +   GRA A  +  +    E
Sbjct  339  YVHRIGRTGRAGASGAAISLACEE  362


>sp|A4QYM6|DRS1_PYRO7 ATP-dependent RNA helicase DRS1 OS=Pyricularia 
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 
GN=DRS1 PE=3 SV=1
Length=790

 Score = 41.6 bits (96),  Expect = 0.027, Method: Compositional matrix adjust.
 Identities = 41/160 (26%), Positives = 71/160 (44%), Gaps = 16/160 (10%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            R IIF R ++ AH   +                 L+G   +     M+Q  + + ++ F+
Sbjct  502  RVIIFFRQKKIAHHARIIFG--------------LLGLSCAELHGSMSQIQRIQSVEAFR  547

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEG  486
            DG ++ L+AT +A  GLDI   + V+ Y    +    V   GR ARA +S  A  +A E 
Sbjct  548  DGKVSFLLATDLASRGLDIKGVDTVINYEAPQSLEIYVHRVGRTARAGRSGTAITLAAEP  607

Query  487  SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQ  526
             R++ +  +        + +   +   D   +QAKI +L+
Sbjct  608  DRKVVKAAVKAGKAQGAKISSRIIDAADADSWQAKIDELE  647


>sp|A2QC74|DBP2_ASPNC ATP-dependent RNA helicase dbp2 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=dbp2 PE=3 SV=1
Length=565

 Score = 41.6 bits (96),  Expect = 0.027, Method: Compositional matrix adjust.
 Identities = 37/150 (25%), Positives = 70/150 (47%), Gaps = 27/150 (18%)

Query  351  LEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSS  410
            ++ LEKI++     + + + +IFT T++ A  +  +L+Q                 G  +
Sbjct  373  IKHLEKIME-----NRANKCLIFTGTKRIADEITRFLRQD----------------GWPA  411

Query  411  QSTHMTQRDQQE--VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE---ISM  465
             S H  ++ Q+   V+ +F+ G   ++VAT VA  G+D+     V+ Y    N    +  
Sbjct  412  LSIHGDKQQQERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHR  471

Query  466  VQARGRARADQSVYAFVATEGSRELKRELI  495
            +   GRA A  +   F  T+ S++  R+L+
Sbjct  472  IGRTGRAGAKGTAITFFTTDNSKQ-ARDLV  500


>sp|P39145|COMFA_BACSU ComF operon protein 1 OS=Bacillus subtilis 
(strain 168) OX=224308 GN=comFA PE=2 SV=1
Length=463

 Score = 41.2 bits (95),  Expect = 0.027, Method: Compositional matrix adjust.
 Identities = 22/74 (30%), Positives = 39/74 (53%), Gaps = 2/74 (3%)

Query  400  AQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIP--HCNVVVRYG  457
            A    G    + S H   + ++E +Q+F+DG L+LL+ T++ E G+ +P     V+    
Sbjct  346  AACFKGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGVLGAES  405

Query  458  LLTNEISMVQARGR  471
             +  E ++VQ  GR
Sbjct  406  SIFTESALVQIAGR  419


>sp|A1D373|PRP5_NEOFI Pre-mRNA-processing ATP-dependent RNA helicase 
prp5 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 
3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) 
OX=331117 GN=prp5 PE=3 SV=1
Length=1193

 Score = 41.6 bits (96),  Expect = 0.028, Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 74/174 (43%), Gaps = 25/174 (14%)

Query  347  ENPKLEMLEKILQRQFS--SSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI  404
            E+ K   L +IL   +S  ++   R +IF   +++A +LL  L ++              
Sbjct  787  EDTKFVRLLEILGNLYSDDANEDARALIFVDRQEAADTLLRELMRK--------------  832

Query  405  GAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---L  459
              G    S H    Q D+   I+ F+ G   +L+ATSVA  GLD+    +VV Y     L
Sbjct  833  --GYPCMSIHGGKDQIDRDSTIEDFKAGIFPILIATSVAARGLDVKQLKLVVNYDAPNHL  890

Query  460  TNEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM  513
             + +      GRA    +   F+  E  +E     I +AL    ++    VQKM
Sbjct  891  EDYVHRAGRTGRAGNTGTAVTFLTEE--QERYSVDIAKALRQSGQKVPEPVQKM  942


>sp|Q9NR30|DDX21_HUMAN Nucleolar RNA helicase 2 OS=Homo sapiens 
OX=9606 GN=DDX21 PE=1 SV=5
Length=783

 Score = 41.6 bits (96),  Expect = 0.028, Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 19/110 (17%)

Query  364  SSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQ  421
            S +  R IIF  T++ A  L          Q   I+          +QS H  + Q+ ++
Sbjct  435  SGHQGRTIIFCETKKEAQELS---------QNSAIK--------QDAQSLHGDIPQKQRE  477

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
              ++ F++G+  +LVAT+VA  GLDIP  ++V++     +  S +   GR
Sbjct  478  ITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGR  527


>sp|A2QIL2|PRP28_ASPNC Pre-mRNA-splicing ATP-dependent RNA helicase 
prp28 OS=Aspergillus niger (strain ATCC MYA-4892 / CBS 
513.88 / FGSC A1513) OX=425011 GN=prp28 PE=3 SV=1
Length=810

 Score = 41.6 bits (96),  Expect = 0.029, Method: Compositional matrix adjust.
 Identities = 32/107 (30%), Positives = 57/107 (53%), Gaps = 8/107 (7%)

Query  407  GNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
            G SS + H   TQ  ++  +   ++GT ++LVAT +A  G+D+P  ++VV + + T+  S
Sbjct  672  GFSSVTLHGSKTQDQREAALASVRNGTTDVLVATDLAGRGIDVPDVSLVVNFNMATSIES  731

Query  465  MVQARGR-ARADQSVYA--FVATEGSR---ELKRELINEALETLMEQ  505
                 GR  RA +S  A  F+  E +    +LK+ L+   +  + E+
Sbjct  732  YTHRIGRTGRAGKSGVAITFLGNEDADVMYDLKQMLMKSPISRVPEE  778


>sp|P20703|UVSW_BPT4 ATP-dependent DNA helicase uvsW OS=Enterobacteria 
phage T4 OX=10665 GN=uvsW PE=1 SV=2
Length=587

 Score = 41.2 bits (95),  Expect = 0.029, Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 18/144 (13%)

Query  6    YQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            YQ + +   L  +  I+ LPT AGK+   A +A+ +LE  +G K++++V    L TQ  +
Sbjct  117  YQKDAVFEGLVNRRRILNLPTSAGKSLIQALLARYYLENYEG-KILIIVPTTALTTQMAD  175

Query  66   EFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELL----QMALTSPEEEEHVE  121
            +F   +D R      S  M  + G G  A   D     A ++    Q  +  P+E     
Sbjct  176  DF---VDYR----LFSHAMIKKIGGG--ASKDDKYKNDAPVVVGTWQTVVKQPKE----W  222

Query  122  LTVFSLIVVDECHHTHKDTVYNVI  145
             + F +++ DECH     ++ ++I
Sbjct  223  FSQFGMMMNDECHLATGKSISSII  246


>sp|B6EPA4|RHLB_ALISL ATP-dependent RNA helicase RhlB OS=Aliivibrio 
salmonicida (strain LFI1238) OX=316275 GN=rhlB PE=3 SV=1
Length=434

 Score = 41.2 bits (95),  Expect = 0.029, Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 58/129 (45%), Gaps = 19/129 (15%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +++ ++      R IIF  T+      L+W      L     R  LL G    
Sbjct  243  KMALLQTLIEEEWPD----RAIIFANTKHKCE--LVWGH----LAADKHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q+ ++ ++++F  G +++LVAT VA  GL IP    V  + L       V   
Sbjct  289  ----DVPQKKRERILEEFTKGEVDILVATDVAARGLHIPQVTHVFNFDLPNEAEDYVHRI  344

Query  470  GR-ARADQS  477
            GR  RA +S
Sbjct  345  GRTGRAGES  353


>sp|Q4WT99|PRP5_ASPFU Pre-mRNA-processing ATP-dependent RNA helicase 
prp5 OS=Aspergillus fumigatus (strain ATCC MYA-4609 / 
CBS 101355 / FGSC A1100 / Af293) OX=330879 GN=prp5 PE=3 SV=1
Length=1211

 Score = 41.6 bits (96),  Expect = 0.029, Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 74/174 (43%), Gaps = 25/174 (14%)

Query  347  ENPKLEMLEKILQRQFS--SSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI  404
            E+ K   L +IL   +S  ++   R +IF   +++A +LL  L ++              
Sbjct  805  EDTKFVRLLEILGNLYSDDANEDARALIFVDRQEAADTLLRELMRK--------------  850

Query  405  GAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---L  459
              G    S H    Q D+   I+ F+ G   +L+ATSVA  GLD+    +VV Y     L
Sbjct  851  --GYPCMSIHGGKDQIDRDSTIEDFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHL  908

Query  460  TNEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM  513
             + +      GRA    +   F+  E  +E     I +AL    ++    VQKM
Sbjct  909  EDYVHRAGRTGRAGNTGTAVTFLTEE--QERYSVDIAKALRQSGQKVPEPVQKM  960


>sp|A9IR19|UVRB_BORPD UvrABC system protein B OS=Bordetella petrii 
(strain ATCC BAA-461 / DSM 12804 / CCUG 43448) OX=340100 
GN=uvrB PE=3 SV=1
Length=675

 Score = 41.6 bits (96),  Expect = 0.029, Method: Compositional matrix adjust.
 Identities = 21/56 (38%), Positives = 34/56 (61%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + GT ++LV  ++  EGLDIP  ++V      + G L +E S++Q  GRA
Sbjct  495  EIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA  550


>sp|P0CQ98|PRP5_CRYNJ Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Cryptococcus neoformans var. neoformans serotype 
D (strain JEC21 / ATCC MYA-565) OX=214684 GN=PRP5 PE=3 SV=1
Length=1072

 Score = 41.6 bits (96),  Expect = 0.029, Method: Compositional matrix adjust.
 Identities = 23/75 (31%), Positives = 38/75 (51%), Gaps = 3/75 (4%)

Query  417  QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGRAR  473
            Q D+ E I+ F++G + ++VATSVA  GLD+    +V+ Y     + + +      GRA 
Sbjct  692  QVDRDEAIKNFKNGDVPIIVATSVAARGLDVKELKLVINYDAPNHMEDYVHRAGRTGRAG  751

Query  474  ADQSVYAFVATEGSR  488
               +   F+  E  R
Sbjct  752  NKGTCITFITPEQER  766


>sp|P0CQ99|PRP5_CRYNB Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Cryptococcus neoformans var. neoformans serotype 
D (strain B-3501A) OX=283643 GN=PRP5 PE=3 SV=1
Length=1072

 Score = 41.6 bits (96),  Expect = 0.029, Method: Compositional matrix adjust.
 Identities = 23/75 (31%), Positives = 38/75 (51%), Gaps = 3/75 (4%)

Query  417  QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGRAR  473
            Q D+ E I+ F++G + ++VATSVA  GLD+    +V+ Y     + + +      GRA 
Sbjct  692  QVDRDEAIKNFKNGDVPIIVATSVAARGLDVKELKLVINYDAPNHMEDYVHRAGRTGRAG  751

Query  474  ADQSVYAFVATEGSR  488
               +   F+  E  R
Sbjct  752  NKGTCITFITPEQER  766


>sp|Q2U070|DBP2_ASPOR ATP-dependent RNA helicase dbp2 OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=dbp2 
PE=3 SV=1
Length=554

 Score = 41.2 bits (95),  Expect = 0.030, Method: Compositional matrix adjust.
 Identities = 37/150 (25%), Positives = 70/150 (47%), Gaps = 27/150 (18%)

Query  351  LEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSS  410
            ++ LEKI++ + +     + +IFT T++ A  +  +L+Q                 G  +
Sbjct  366  IKHLEKIMENRGN-----KCLIFTGTKRIADEITRFLRQD----------------GWPA  404

Query  411  QSTHMTQRDQQE--VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE---ISM  465
             S H  ++ Q+   V+ +F+ G   ++VAT VA  G+D+     V+ Y    N    +  
Sbjct  405  LSIHGDKQQQERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHR  464

Query  466  VQARGRARADQSVYAFVATEGSRELKRELI  495
            +   GRA A  +   F  T+ S++  R+L+
Sbjct  465  IGRTGRAGAKGTAITFFTTDNSKQ-ARDLV  493


>sp|A9L5D5|RHLB_SHEB9 ATP-dependent RNA helicase RhlB OS=Shewanella 
baltica (strain OS195) OX=399599 GN=rhlB PE=3 SV=1
Length=438

 Score = 41.2 bits (95),  Expect = 0.030, Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 20/106 (19%)

Query  369  RGIIFTRTRQSAHSLLLWLQ---QQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQ  425
            + I+F+ T+ S  +L  WL+    + GL T D+                  Q+ +  +++
Sbjct  258  KAIVFSNTKHSCETLWSWLEGDGHRVGLLTGDV-----------------PQKKRIRILE  300

Query  426  KFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
            +F  G L++LVAT VA  GL I   + V  Y L  +    V   GR
Sbjct  301  QFTSGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGR  346


>sp|A6WTD3|RHLB_SHEB8 ATP-dependent RNA helicase RhlB OS=Shewanella 
baltica (strain OS185) OX=402882 GN=rhlB PE=3 SV=1
Length=438

 Score = 41.2 bits (95),  Expect = 0.030, Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 20/106 (19%)

Query  369  RGIIFTRTRQSAHSLLLWLQ---QQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQ  425
            + I+F+ T+ S  +L  WL+    + GL T D+                  Q+ +  +++
Sbjct  258  KAIVFSNTKHSCETLWSWLEGDGHRVGLLTGDV-----------------PQKKRIRILE  300

Query  426  KFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
            +F  G L++LVAT VA  GL I   + V  Y L  +    V   GR
Sbjct  301  QFTSGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGR  346


>sp|Q5F485|DDX42_CHICK ATP-dependent RNA helicase DDX42 OS=Gallus 
gallus OX=9031 GN=DDX42 PE=2 SV=1
Length=944

 Score = 41.6 bits (96),  Expect = 0.030, Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 17/123 (14%)

Query  361  QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ  420
            +F+SS S   ++F   + +A  L   L+Q+      D    LL G         M Q ++
Sbjct  494  EFTSSGSV--LLFVTKKANAEELANNLKQE------DHNLGLLHG--------DMDQSER  537

Query  421  QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVY  479
             +VI +F+   + +LVAT VA  GLDIP    V+ Y +  +  +     GR  RA +   
Sbjct  538  NKVISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGV  597

Query  480  AFV  482
            A+ 
Sbjct  598  AYT  600


>sp|Q62095|DDX3Y_MOUSE ATP-dependent RNA helicase DDX3Y OS=Mus 
musculus OX=10090 GN=Ddx3y PE=1 SV=2
Length=658

 Score = 41.2 bits (95),  Expect = 0.030, Method: Compositional matrix adjust.
 Identities = 29/101 (29%), Positives = 50/101 (50%), Gaps = 14/101 (14%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            ++F  T++ A SL  +L Q++   T              S     +Q+D++E + +F+ G
Sbjct  444  LVFVETKKGADSLENFLFQERYACT--------------SIHGDRSQKDREEALHQFRSG  489

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
               +LVAT+VA  GLDI +   V+ + L ++    V   GR
Sbjct  490  RKPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGR  530


>sp|A2C5S6|UVRB_PROM3 UvrABC system protein B OS=Prochlorococcus 
marinus (strain MIT 9303) OX=59922 GN=uvrB PE=3 SV=1
Length=679

 Score = 41.2 bits (95),  Expect = 0.031, Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 53/109 (49%), Gaps = 19/109 (17%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            R +I T T++ A  L  +L +       D+R + L          H  +R   E+IQ  +
Sbjct  446  RVLITTLTKRMAEDLTDYLAEN------DVRVRYL------HSEIHSIER--IEIIQDLR  491

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
             G  ++LV  ++  EGLD+P  ++VV     + G L  E S++Q  GRA
Sbjct  492  LGEYDVLVGVNLLREGLDLPEVSLVVILDADKEGFLRAERSLIQTIGRA  540


>sp|P38719|DBP8_YEAST ATP-dependent RNA helicase DBP8 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DBP8 
PE=1 SV=1
Length=431

 Score = 41.2 bits (95),  Expect = 0.031, Method: Compositional matrix adjust.
 Identities = 22/67 (33%), Positives = 37/67 (55%), Gaps = 1/67 (1%)

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
            +S  + M Q+++   + +F+     +L+AT VA  GLDIP   +VV Y + ++    +  
Sbjct  282  ASLHSQMPQQERTNSLHRFRANAARILIATDVASRGLDIPTVELVVNYDIPSDPDVFIHR  341

Query  469  RGR-ARA  474
             GR ARA
Sbjct  342  SGRTARA  348


>sp|A6ZT77|DBP8_YEAS7 ATP-dependent RNA helicase DBP8 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=DBP8 PE=3 SV=1
Length=431

 Score = 41.2 bits (95),  Expect = 0.031, Method: Compositional matrix adjust.
 Identities = 22/67 (33%), Positives = 37/67 (55%), Gaps = 1/67 (1%)

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
            +S  + M Q+++   + +F+     +L+AT VA  GLDIP   +VV Y + ++    +  
Sbjct  282  ASLHSQMPQQERTNSLHRFRANAARILIATDVASRGLDIPTVELVVNYDIPSDPDVFIHR  341

Query  469  RGR-ARA  474
             GR ARA
Sbjct  342  SGRTARA  348


>sp|A3D9I5|RHLB_SHEB5 ATP-dependent RNA helicase RhlB OS=Shewanella 
baltica (strain OS155 / ATCC BAA-1091) OX=325240 GN=rhlB 
PE=3 SV=1
Length=438

 Score = 41.2 bits (95),  Expect = 0.031, Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 20/93 (22%)

Query  369  RGIIFTRTRQSAHSLLLWLQ---QQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQ  425
            + I+F+ T+ S  +L  WL+    + GL T D+                  Q+ +  +++
Sbjct  258  KAIVFSNTKHSCETLWSWLEGDGHRVGLLTGDV-----------------PQKKRIRILE  300

Query  426  KFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL  458
            +F  G L++LVAT VA  GL I   + V  Y L
Sbjct  301  QFTSGQLDILVATDVAARGLHISDVSHVYNYDL  333


>sp|B8E670|RHLB_SHEB2 ATP-dependent RNA helicase RhlB OS=Shewanella 
baltica (strain OS223) OX=407976 GN=rhlB PE=3 SV=1
Length=438

 Score = 41.2 bits (95),  Expect = 0.031, Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 20/93 (22%)

Query  369  RGIIFTRTRQSAHSLLLWLQ---QQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQ  425
            + I+F+ T+ S  +L  WL+    + GL T D+                  Q+ +  +++
Sbjct  258  KAIVFSNTKHSCETLWSWLEGDGHRVGLLTGDV-----------------PQKKRIRILE  300

Query  426  KFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL  458
            +F  G L++LVAT VA  GL I   + V  Y L
Sbjct  301  QFTSGQLDILVATDVAARGLHISDVSHVYNYDL  333


>sp|Q58083|H669_METJA Probable ATP-dependent RNA helicase MJ0669 
OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 
2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ0669 
PE=1 SV=1
Length=367

 Score = 40.8 bits (94),  Expect = 0.031, Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 70/150 (47%), Gaps = 27/150 (18%)

Query  347  ENPKLEMLEKILQ-RQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
            EN + E L ++L+ ++F       G++F +T++    L                A +L  
Sbjct  223  ENERFEALCRLLKNKEFY------GLVFCKTKRDTKEL----------------ASMLRD  260

Query  406  AGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI  463
             G  + + H  ++Q  +++VI+ F+   + +L+AT V   G+D+   N V+ Y L  N  
Sbjct  261  IGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPE  320

Query  464  SMVQARGR-ARADQSVYAFVATEGSRELKR  492
            S +   GR  RA +   A ++    RE K+
Sbjct  321  SYMHRIGRTGRAGKKGKA-ISIINRREYKK  349


>sp|A1CKJ0|DBP8_ASPCL ATP-dependent RNA helicase dbp8 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=dbp8 PE=3 SV=1
Length=523

 Score = 41.2 bits (95),  Expect = 0.031, Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 45/87 (52%), Gaps = 3/87 (3%)

Query  394  QTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN  451
            +T D+  ++L    +   S H  + Q ++   + +F+     +LVAT VA  GLDIP  +
Sbjct  359  KTADLLERMLRRLSHRVTSLHSLLPQSERNANLARFRASAARILVATDVASRGLDIPSVS  418

Query  452  VVVRYGLLTNEISMVQARGR-ARADQS  477
            +VV Y +  N    V   GR ARA +S
Sbjct  419  LVVNYDVPRNPDDYVHRVGRTARAGRS  445


>sp|Q7TV80|UVRB_PROMM UvrABC system protein B OS=Prochlorococcus 
marinus (strain MIT 9313) OX=74547 GN=uvrB PE=3 SV=1
Length=679

 Score = 41.2 bits (95),  Expect = 0.032, Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 53/109 (49%), Gaps = 19/109 (17%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            R +I T T++ A  L  +L +       D+R + L          H  +R   E+IQ  +
Sbjct  446  RVLITTLTKRMAEDLTDYLAEN------DVRVRYL------HSEIHSIER--IEIIQDLR  491

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
             G  ++LV  ++  EGLD+P  ++VV     + G L  E S++Q  GRA
Sbjct  492  LGEYDVLVGVNLLREGLDLPEVSLVVILDADKEGFLRAERSLIQTIGRA  540


>sp|Q49Z29|CSHA_STAS1 DEAD-box ATP-dependent RNA helicase CshA 
OS=Staphylococcus saprophyticus subsp. saprophyticus (strain 
ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41) OX=342451 
GN=cshA PE=3 SV=1
Length=506

 Score = 41.2 bits (95),  Expect = 0.032, Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 41/79 (52%), Gaps = 2/79 (3%)

Query  396  VDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV  453
            VD     LI  G  ++  H  +TQ  + EV++KF++  L++LVAT VA  GLDI   + V
Sbjct  253  VDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQLDILVATDVAARGLDISGVSHV  312

Query  454  VRYGLLTNEISMVQARGRA  472
              + +  +  S     GR 
Sbjct  313  YNFDIPQDTESYTHRIGRT  331


>sp|A6RUH2|DRS1_BOTFB ATP-dependent RNA helicase drs1 OS=Botryotinia 
fuckeliana (strain B05.10) OX=332648 GN=drs1 PE=3 SV=1
Length=801

 Score = 41.2 bits (95),  Expect = 0.032, Method: Compositional matrix adjust.
 Identities = 26/91 (29%), Positives = 45/91 (49%), Gaps = 20/91 (22%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG-AGNSSQSTH--MTQRDQQEVIQ  425
            R I+F R ++ AH                 RA+++ G +G  +   H  M+Q  + + ++
Sbjct  515  RVIVFFRQKKEAH-----------------RARIIFGLSGLKATELHGSMSQEQRIKSVE  557

Query  426  KFQDGTLNLLVATSVAEEGLDIPHCNVVVRY  456
             F+DG  + L+AT +A  GLDI   + V+ Y
Sbjct  558  AFRDGKASFLLATDLASRGLDIKGVDTVINY  588


>sp|A6QSQ0|FAL1_AJECN ATP-dependent RNA helicase FAL1 OS=Ajellomyces 
capsulatus (strain NAm1 / WU24) OX=2059318 GN=FAL1 PE=3 
SV=1
Length=450

 Score = 41.2 bits (95),  Expect = 0.033, Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 3/86 (3%)

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
            SS    M Q+++  ++Q F+ G   +L++T V   G+D+   ++V+ Y L +N  + +  
Sbjct  292  SSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHR  351

Query  469  RGRA-RADQSVYA--FVATEGSRELK  491
             GR+ R  +   A  FV +E  R L+
Sbjct  352  IGRSGRFGRKGVAINFVTSEDVRILR  377


>sp|Q75F95|DRS1_EREGS ATP-dependent RNA helicase DRS1 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=DRS1 PE=3 SV=1
Length=734

 Score = 41.2 bits (95),  Expect = 0.033, Method: Compositional matrix adjust.
 Identities = 36/146 (25%), Positives = 66/146 (45%), Gaps = 16/146 (11%)

Query  358  LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ  417
            L R+  S+   R ++F   ++ AH L + L               L+G         +TQ
Sbjct  458  LLRKLDSTGQKRIVVFVARKEVAHRLRVILG--------------LLGMKAGELHGSLTQ  503

Query  418  RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL-LTNEISMVQARGRARADQ  476
              + + +  F+   + +LV T +A  GLDIP   VV+ Y +  T EI + +    ARA +
Sbjct  504  EQRLQSVNNFKSLDVPVLVCTDLASRGLDIPKIEVVINYDMPKTYEIYLHRVGRTARAGR  563

Query  477  SVYAFVATEGSRELKRELINEALETL  502
               + V   G    +R ++ +A++++
Sbjct  564  EGKS-VTLVGESTQERSIVKDAIKSV  588


>sp|P33919|RADD_ECOLI Putative DNA repair helicase RadD OS=Escherichia 
coli (strain K12) OX=83333 GN=radD PE=1 SV=2
Length=586

 Score = 41.2 bits (95),  Expect = 0.033, Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 78/175 (45%), Gaps = 33/175 (19%)

Query  3    LRSYQWEVIMPALE-----GKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRV  57
            LR YQ E +   L          +I LPTGAGK+   A +A+     +   +V+VL +  
Sbjct  5    LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELAR-----LARGRVLVLAHVK  59

Query  58   HLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE  117
             LV Q+  +++ +         L  D+   AG         ++  + + +   L + + E
Sbjct  60   ELVAQNHAKYQAL--------GLEADIFA-AGLKRKESHGKVVFGSVQSVARNLDAFQGE  110

Query  118  EHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLEL--KLQRAQPLPQVLGLTASP  170
                   FSL++VDECH    D       SQY ++   L +  P  ++LGLTA+P
Sbjct  111  -------FSLLIVDECHRIGDDE-----ESQYQQILTHLTKVNPHLRLLGLTATP  153


>sp|A7F4L5|DRS1_SCLS1 ATP-dependent RNA helicase drs1 OS=Sclerotinia 
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 
GN=drs1 PE=3 SV=1
Length=801

 Score = 41.2 bits (95),  Expect = 0.033, Method: Compositional matrix adjust.
 Identities = 26/91 (29%), Positives = 45/91 (49%), Gaps = 20/91 (22%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG-AGNSSQSTH--MTQRDQQEVIQ  425
            R I+F R ++ AH                 RA+++ G +G  +   H  M+Q  + + ++
Sbjct  515  RVIVFFRQKKEAH-----------------RARIIFGLSGLKATELHGSMSQEQRIKSVE  557

Query  426  KFQDGTLNLLVATSVAEEGLDIPHCNVVVRY  456
             F+DG  + L+AT +A  GLDI   + V+ Y
Sbjct  558  AFRDGKASFLLATDLASRGLDIKGVDTVINY  588


>sp|A5E1W4|DBP3_LODEL ATP-dependent RNA helicase DBP3 OS=Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=DBP3 PE=3 SV=2
Length=535

 Score = 41.2 bits (95),  Expect = 0.034, Method: Compositional matrix adjust.
 Identities = 29/84 (35%), Positives = 41/84 (49%), Gaps = 2/84 (2%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR  473
            ++Q+ + + +Q F+ G  NLL+AT VA  GLDIP+   V+           V   GR  R
Sbjct  408  LSQQQRTQALQSFKSGECNLLLATDVAARGLDIPNVKYVINLTFPLTIEDYVHRLGRTGR  467

Query  474  ADQSVYAFV-ATEGSRELKRELIN  496
            A Q+  A    TE  + L   L N
Sbjct  468  AGQTGIAHTFFTEDEKHLSGALCN  491


>sp|A1RFB3|RHLB_SHESW ATP-dependent RNA helicase RhlB OS=Shewanella 
sp. (strain W3-18-1) OX=351745 GN=rhlB PE=3 SV=1
Length=439

 Score = 40.8 bits (94),  Expect = 0.034, Method: Compositional matrix adjust.
 Identities = 48/188 (26%), Positives = 78/188 (41%), Gaps = 29/188 (15%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            + I+F+ T+ S  +L  WL+          R  LL G         + Q+ +  ++++F 
Sbjct  258  KAIVFSNTKHSCENLWSWLEGDGH------RVGLLTG--------DVPQKKRIRILEQFT  303

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGRARADQSVYAFVATE  485
             G L++LVAT VA  GL I   + V  Y L     + +  +   GRA       +F   E
Sbjct  304  SGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSISFACEE  363

Query  486  GSRELK--RELINEAL-------ETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQ  536
             +  L      IN ++         L+E   A V+     ++ A  R+L++ A   R  Q
Sbjct  364  YALNLPAIESYINHSIPVSNYDSSALLEDIPAPVKI--PRKHPAGTRNLRERAGAGR-PQ  420

Query  537  AAQRENQR  544
             A R   R
Sbjct  421  GAHRSGGR  428


>sp|A4YB09|RHLB_SHEPC ATP-dependent RNA helicase RhlB OS=Shewanella 
putrefaciens (strain CN-32 / ATCC BAA-453) OX=319224 GN=rhlB 
PE=3 SV=1
Length=439

 Score = 40.8 bits (94),  Expect = 0.034, Method: Compositional matrix adjust.
 Identities = 48/188 (26%), Positives = 78/188 (41%), Gaps = 29/188 (15%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            + I+F+ T+ S  +L  WL+          R  LL G         + Q+ +  ++++F 
Sbjct  258  KAIVFSNTKHSCENLWSWLEGDGH------RVGLLTG--------DVPQKKRIRILEQFT  303

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGRARADQSVYAFVATE  485
             G L++LVAT VA  GL I   + V  Y L     + +  +   GRA       +F   E
Sbjct  304  SGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSISFACEE  363

Query  486  GSRELK--RELINEAL-------ETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQ  536
             +  L      IN ++         L+E   A V+     ++ A  R+L++ A   R  Q
Sbjct  364  YALNLPAIESYINHSIPVSNYDSSALLEDIPAPVKI--PRKHPAGTRNLRERAGAGR-PQ  420

Query  537  AAQRENQR  544
             A R   R
Sbjct  421  GAHRSGGR  428


>sp|Q12S35|RHLB_SHEDO ATP-dependent RNA helicase RhlB OS=Shewanella 
denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) 
OX=318161 GN=rhlB PE=3 SV=1
Length=432

 Score = 40.8 bits (94),  Expect = 0.034, Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 43/90 (48%), Gaps = 14/90 (16%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            + I+F+ T+ S  +L  WL+          R  LL G         + Q+ +  ++++F 
Sbjct  258  KAIVFSNTKHSCENLWSWLEGDGH------RVGLLTG--------DVPQKKRIRILEQFT  303

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGL  458
             G L++LVAT VA  GL I   + V  Y L
Sbjct  304  SGDLDVLVATDVAARGLHISDVSHVYNYDL  333


>sp|Q6LLL5|RHLB_PHOPR ATP-dependent RNA helicase RhlB OS=Photobacterium 
profundum (strain SS9) OX=298386 GN=rhlB PE=3 SV=1
Length=437

 Score = 40.8 bits (94),  Expect = 0.034, Method: Compositional matrix adjust.
 Identities = 40/161 (25%), Positives = 69/161 (43%), Gaps = 27/161 (17%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +++ ++      R IIF  T+     +  W      L   + R  LL G    
Sbjct  243  KMRLLQTLIEEEWPD----RAIIFANTKHRCEDI--WGH----LAADNHRVGLLNG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE---ISMV  466
                 + Q+ +  ++++F  G +++LVAT VA  GL IP    V  Y L  +    +  +
Sbjct  289  ----DVPQKKRVRILEQFTQGDIDILVATDVAARGLHIPQVTHVYNYDLPDDAEDYVHRI  344

Query  467  QARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAV  507
               GRA    S  +F   E +  L       A+ET +E  +
Sbjct  345  GRTGRAGESGSSISFACEEYAINLP------AIETYIEHPI  379


>sp|Q9Y6V7|DDX49_HUMAN Probable ATP-dependent RNA helicase DDX49 
OS=Homo sapiens OX=9606 GN=DDX49 PE=1 SV=1
Length=483

 Score = 40.8 bits (94),  Expect = 0.035, Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 67/164 (41%), Gaps = 29/164 (18%)

Query  293  IHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLE  352
            + DT+R +  LA  Q F+       + +   ++R L +               PE  K  
Sbjct  189  LTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLV---------------PEKVKDA  233

Query  353  MLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQS  412
             L  ++QR          IIFT T ++   L + L++     TV + +            
Sbjct  234  YLVHLIQRFQDEHEDWSIIIFTNTCKTCQILCMMLRKF-SFPTVALHSM-----------  281

Query  413  THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY  456
              M Q+++   + KF+     +L+AT VA  GLDIP   VV+ +
Sbjct  282  --MKQKERFAALAKFKSSIYRILIATDVASRGLDIPTVQVVINH  323


>sp|Q54QS3|DDX3_DICDI Probable ATP-dependent RNA helicase ddx3 
OS=Dictyostelium discoideum OX=44689 GN=ddx3 PE=3 SV=1
Length=712

 Score = 41.2 bits (95),  Expect = 0.035, Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 14/102 (14%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            +IF  T++S  +L  +L Q+    T  I   L             TQ +++  +Q F+  
Sbjct  508  LIFVETKRSCDTLTYFLNQRN-FPTTCIHGDL-------------TQPERENALQSFRSF  553

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA  472
                LVAT +A  GL I + N+V+ + L T+    V   GR 
Sbjct  554  ATPFLVATDIASRGLHIGNVNLVINFDLPTDIHIYVHRIGRT  595


>sp|Q6CDN5|DBP6_YARLI ATP-dependent RNA helicase DBP6 OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DBP6 PE=3 
SV=1
Length=607

 Score = 41.2 bits (95),  Expect = 0.035, Method: Compositional matrix adjust.
 Identities = 51/200 (26%), Positives = 91/200 (46%), Gaps = 28/200 (14%)

Query  338  LAHLATH--GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQT  395
            L  + TH    E P L + E ++QR  +     RG++FT++ ++A  +   ++    +  
Sbjct  426  LTEIVTHVSAAEKP-LMLCELLVQRDIN-----RGVVFTKSSETAARVARMME----IMD  475

Query  396  VDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVR  455
             DI  +    A  S++++ + +R     +++F DG ++ LV T +   G+D    N V+ 
Sbjct  476  ADIFHKDWKIAAVSAETSSVHRR---RSMKQFIDGKIDFLVCTDLVSRGIDFVVDN-VIN  531

Query  456  YGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELK--RELINEALETLMEQAVAAVQK  512
            Y + + +   V   GR ARA +   A+    GS E K  RE+          + V   Q+
Sbjct  532  YDIPSGKREYVHRVGRTARAGREGNAYTFLTGSGEAKWFREI---------GEFVGRTQE  582

Query  513  MDQAEYQAKIRDLQQAALTK  532
            +D     +   D  Q AL K
Sbjct  583  VDATHINSSHNDGYQEALAK  602


>sp|Q9HGM5|DBP8_SCHPO ATP-dependent RNA helicase dbp8 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=dbp8 
PE=3 SV=1
Length=453

 Score = 40.8 bits (94),  Expect = 0.035, Method: Compositional matrix adjust.
 Identities = 23/66 (35%), Positives = 36/66 (55%), Gaps = 1/66 (2%)

Query  413  THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-  471
            + M QR++   + +F+     +LVAT VA  GLDIP   +V+ + L  +    +   GR 
Sbjct  290  SEMVQRERINSLGRFRAEAAKILVATDVASRGLDIPSVQLVINFDLPRDPDDYIHRVGRT  349

Query  472  ARADQS  477
            ARA +S
Sbjct  350  ARAGRS  355


>sp|Q5ACK7|DRS1_CANAL ATP-dependent RNA helicase DRS1 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DRS1 
PE=3 SV=1
Length=613

 Score = 41.2 bits (95),  Expect = 0.036, Method: Compositional matrix adjust.
 Identities = 47/184 (26%), Positives = 83/184 (45%), Gaps = 22/184 (12%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K + L+  L  Q     S R ++F   +++AH L + L               L+G   S
Sbjct  356  KRDQLKPALLYQLLKGVSSRVVVFVARKETAHRLRIVLG--------------LLGLKVS  401

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL-LTNEISM--V  466
                 +TQ  + + ++ F+   + +L+ T +A  GLDIP   +V+ Y +  T EI +  V
Sbjct  402  ELHGALTQEQRLQNVKNFKSLEVPVLICTDLAARGLDIPKIELVINYDMPKTFEIYLHRV  461

Query  467  QARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQ  526
                RA  D +   FV  E S+E  R ++  A+  +  + VA      QAE   K+ + +
Sbjct  462  GRTARAGRDGTSITFVG-ESSQE--RAIVKSAI--VNGKGVAKTVDWKQAEETNKLLESK  516

Query  527  QAAL  530
            ++ +
Sbjct  517  ESVI  520


>sp|Q55170|UVRB_SYNY3 UvrABC system protein B OS=Synechocystis 
sp. (strain ATCC 27184 / PCC 6803 / Kazusa) OX=1111708 GN=uvrB 
PE=3 SV=1
Length=669

 Score = 41.2 bits (95),  Expect = 0.036, Method: Compositional matrix adjust.
 Identities = 19/56 (34%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E++Q  +DG  ++L+  ++  EGLD+P  ++V      + G L  E S++Q  GRA
Sbjct  487  EILQALRDGEFDVLIGVNLLREGLDLPEVSLVAIMDADKEGFLRAERSLIQTIGRA  542


>sp|Q54KG1|DDX41_DICDI Probable ATP-dependent RNA helicase ddx41 
OS=Dictyostelium discoideum OX=44689 GN=ddx41 PE=1 SV=1
Length=671

 Score = 41.2 bits (95),  Expect = 0.036, Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 3/112 (3%)

Query  416  TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGRA  472
            +Q +++  I+ F++G  ++LVAT VA +GLD P    V+ + +   + N I  +   GR 
Sbjct  509  SQDERESAIKAFREGKKDVLVATDVASKGLDFPEIQHVINFDMPREIENYIHRIGRTGRR  568

Query  473  RADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD  524
                    F+    +  L  +L    +E   +   A ++  D  +Y  K++D
Sbjct  569  GNKGVATTFINKNNTESLLLDLKYLLIEAKQKVPPALLEIPDDNQYLQKLQD  620


>sp|Q9AKD5|MFD_RICTY Transcription-repair-coupling factor OS=Rickettsia 
typhi (strain ATCC VR-144 / Wilmington) OX=257363 
GN=mfd PE=3 SV=1
Length=1120

 Score = 41.2 bits (95),  Expect = 0.036, Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 42/78 (54%), Gaps = 2/78 (3%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS-MVQARGR-A  472
            MT     EV+ +F  G  ++L++T++ E G+DI   N ++ +   T  +S + Q RGR  
Sbjct  825  MTPSKIDEVMSEFYAGKFDILISTTIIESGIDITEANTMIIHNADTLGLSQLYQLRGRIG  884

Query  473  RADQSVYAFVATEGSREL  490
            R     YA++    +++L
Sbjct  885  RGKIRGYAYLTVASNKKL  902


>sp|Q1DTB3|FAL1_COCIM ATP-dependent RNA helicase FAL1 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=FAL1 PE=3 SV=2
Length=399

 Score = 40.8 bits (94),  Expect = 0.037, Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 3/86 (3%)

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
            SS    M Q+++  ++Q F+ G   +L++T V   G+D+   ++V+ Y L +N  + +  
Sbjct  292  SSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHR  351

Query  469  RGRA-RADQSVYA--FVATEGSRELK  491
             GR+ R  +   A  FV +E  R L+
Sbjct  352  IGRSGRFGRKGVAINFVTSEDVRILR  377


>sp|Q5BCU6|PRP28_EMENI Pre-mRNA-splicing ATP-dependent RNA helicase 
prp28 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 
/ CBS 112.46 / NRRL 194 / M139) OX=227321 GN=prp28 PE=3 
SV=2
Length=782

 Score = 41.2 bits (95),  Expect = 0.038, Method: Compositional matrix adjust.
 Identities = 31/107 (29%), Positives = 57/107 (53%), Gaps = 8/107 (7%)

Query  407  GNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
            G SS + H   TQ  ++  +   ++G+ ++LVAT +A  G+D+P  ++V+ + + T+  S
Sbjct  645  GFSSVTLHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVINFNMATSIES  704

Query  465  MVQARGR-ARADQSVYA--FVATEGSR---ELKRELINEALETLMEQ  505
                 GR  RA +S  A  F+  E +    +LK+ LI   +  + E+
Sbjct  705  YTHRIGRTGRAGKSGVAITFLGNEDADVMYDLKQMLIKSPISRVPEE  751


>sp|Q9SA27|RH36_ARATH DEAD-box ATP-dependent RNA helicase 36 OS=Arabidopsis 
thaliana OX=3702 GN=RH36 PE=2 SV=1
Length=491

 Score = 40.8 bits (94),  Expect = 0.038, Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 69/147 (47%), Gaps = 19/147 (13%)

Query  424  IQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-  481
            + KF+ G + +L+AT VA  GLDIP  ++V+ Y +  +    V   GR ARA +   A  
Sbjct  345  LSKFKSGKVPILLATDVASRGLDIPTVDLVINYDIPRDPRDYVHRVGRTARAGRGGLAVS  404

Query  482  VATEGSREL---------------KRELINEALET--LMEQAVAAVQKMDQAEYQAKIRD  524
            + TE   +L                +++I ++LE   + +    A+ KM    ++ K++D
Sbjct  405  IITETDVKLIHKIEEEVGKKMEPYNKKVITDSLEVTKVSKAKRVAMMKMLDNGFEDKVKD  464

Query  525  LQQAALTKRAAQAAQRENQRQQFPVEH  551
             ++      A +   ++  ++Q   E+
Sbjct  465  RRKLKRKTLADKGLLKKRGKRQKSTEN  491


>sp|A5E6W6|RRP3_LODEL ATP-dependent rRNA helicase RRP3 OS=Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=RRP3 PE=3 SV=1
Length=504

 Score = 40.8 bits (94),  Expect = 0.038, Method: Compositional matrix adjust.
 Identities = 32/90 (36%), Positives = 42/90 (47%), Gaps = 15/90 (17%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            R IIFTRT        L L    G + V++  Q             M Q  +   I KF+
Sbjct  339  RVIIFTRTVVHTRRCCLMLLNL-GFKCVELHGQ-------------MPQSRRLGAINKFK  384

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGL  458
             GT  +LVAT VA  GLDIP  ++V+ Y +
Sbjct  385  AGT-PILVATDVAARGLDIPAVDLVINYDI  413


>sp|Q59MW2|DBP6_CANAL ATP-dependent RNA helicase DBP6 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DBP6 
PE=3 SV=2
Length=606

 Score = 40.8 bits (94),  Expect = 0.039, Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 83/183 (45%), Gaps = 18/183 (10%)

Query  357  ILQRQFSSSNSPRGI-IFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL-LIGAGNSSQSTH  414
            IL +   S+N    + IFT++ +S+  L   L      Q + I  ++  I + N+  S  
Sbjct  430  ILTKFLISTNKLSNVLIFTKSNESSIRLTELLTSL--FQKLSINLKIAFINSTNNRTSI-  486

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR  473
                 + +++++F +  +N+L+ T +   G+D+     V+ Y L  +    V   GR AR
Sbjct  487  -----RSKILKQFSNQEVNILITTDLIARGIDVASITDVINYDLPNSSREYVHRVGRTAR  541

Query  474  ADQ--SVYAFVATEGSRELKRELINEA-----LETLMEQAVAAVQKMDQAEYQAKIRDLQ  526
            A+Q    Y+F   +G     ++L +E      +E +       +   D+  YQ  + +LQ
Sbjct  542  ANQVGYAYSFCFGKGENSWFKKLAHEVSRSKEVENVDLNVKELISDRDEEIYQQALHELQ  601

Query  527  QAA  529
            Q A
Sbjct  602  QQA  604


>sp|A5E726|DBP6_LODEL ATP-dependent RNA helicase DBP6 OS=Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=DBP6 PE=3 SV=1
Length=663

 Score = 40.8 bits (94),  Expect = 0.039, Method: Compositional matrix adjust.
 Identities = 43/168 (26%), Positives = 81/168 (48%), Gaps = 21/168 (13%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN-SSQSTHMTQRDQQEVIQKFQD  429
            ++FT++ +S+  L   LQ       + ++ ++ +G  N ++  T +    + ++++ F  
Sbjct  500  LVFTKSNESSIRLCTLLQAI--FDRICLQEKVKVGFMNLTNNRTSL----RSKILKDFTS  553

Query  430  GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQS--VYAFVATEG  486
              +N+LVAT +   GLD+     VV Y LL +    V   GR ARA+Q+   Y  V  +G
Sbjct  554  QKINILVATDLIARGLDVTSIKDVVNYDLLNSSREYVHRVGRTARANQAGNAYNLVFGKG  613

Query  487  --------SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQ  526
                    S E+ R    + +E  ++Q ++     D+  YQ  ++ LQ
Sbjct  614  EEKWFKTISSEVSRNNDVKDVEVNLKQLIS---DEDEKLYQEALQSLQ  658


>sp|Q8W4R3|RH30_ARATH DEAD-box ATP-dependent RNA helicase 30 OS=Arabidopsis 
thaliana OX=3702 GN=RH30 PE=1 SV=2
Length=591

 Score = 40.8 bits (94),  Expect = 0.040, Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 4/83 (5%)

Query  416  TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGRA  472
            TQ ++  V+ +F+ G   ++ AT VA  GLD+     VV Y     L + I  +   GRA
Sbjct  445  TQSERDRVLAEFKSGRSPIMTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRA  504

Query  473  RADQSVYAFVATEGSRELKRELI  495
             A    + F  T  + +  REL+
Sbjct  505  GAKGMAFTFF-THDNAKFARELV  526


>sp|A0PYA5|UVRB_CLONN UvrABC system protein B OS=Clostridium novyi 
(strain NT) OX=386415 GN=uvrB PE=3 SV=1
Length=657

 Score = 40.8 bits (94),  Expect = 0.040, Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 33/58 (57%), Gaps = 5/58 (9%)

Query  420  QQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            + E+I+  + G  ++LV  ++  EGLDIP   +V      + G L +E S+VQ  GRA
Sbjct  483  RMEIIRDLRKGKFDVLVGINLLREGLDIPEVALVAILDADKEGFLRSETSLVQTIGRA  540


>sp|A5DAC8|DBP3_PICGU ATP-dependent RNA helicase DBP3 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DBP3 PE=3 
SV=2
Length=534

 Score = 40.8 bits (94),  Expect = 0.041, Method: Compositional matrix adjust.
 Identities = 29/84 (35%), Positives = 42/84 (50%), Gaps = 2/84 (2%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR  473
            ++Q+ +   +  F+ G  NLL+AT VA  GLDIP+  VV+           V   GR  R
Sbjct  404  LSQQQRTSALDSFKRGDSNLLLATDVAARGLDIPNVKVVINLTFPLTVEDYVHRIGRTGR  463

Query  474  ADQSVYAF-VATEGSRELKRELIN  496
            A Q+  A  + TE  + L   L+N
Sbjct  464  AGQTGIAHTLFTEHEKHLSGALMN  487


>sp|Q5GRL3|UVRB_WOLTR UvrABC system protein B OS=Wolbachia sp. 
subsp. Brugia malayi (strain TRS) OX=292805 GN=uvrB PE=3 SV=1
Length=645

 Score = 40.8 bits (94),  Expect = 0.042, Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            +++ K +   +++L+  ++  EGLDIP C +V      + G L +E S++Q  GRA
Sbjct  485  DIVYKLRSKEIDVLIGVNLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRA  540


>sp|Q2GWJ5|FAL1_CHAGB ATP-dependent RNA helicase FAL1 OS=Chaetomium 
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 
6347 / NRRL 1970) OX=306901 GN=FAL1 PE=3 SV=1
Length=394

 Score = 40.4 bits (93),  Expect = 0.043, Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 3/86 (3%)

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
            SS    M Q+++  ++Q F+ G   +L++T V   G+D+   ++V+ Y L +N  + +  
Sbjct  294  SSMHGDMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHR  353

Query  469  RGRA-RADQSVYA--FVATEGSRELK  491
             GR+ R  +   A  FV +E  R L+
Sbjct  354  IGRSGRFGRKGVAINFVTSEDVRILR  379


>sp|A6QUM7|DBP10_AJECN ATP-dependent RNA helicase DBP10 OS=Ajellomyces 
capsulatus (strain NAm1 / WU24) OX=2059318 GN=DBP10 
PE=3 SV=1
Length=900

 Score = 40.8 bits (94),  Expect = 0.043, Method: Compositional matrix adjust.
 Identities = 21/59 (36%), Positives = 34/59 (58%), Gaps = 1/59 (2%)

Query  424  IQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF  481
            +Q F+DG  ++LV T VA  G+DIP  + V+ Y   +     V   GR ARA ++ +++
Sbjct  407  VQNFRDGITHILVVTDVAARGIDIPILSNVINYDFPSQPKIFVHRVGRTARAGKTGWSY  465


>sp|Q7MYL2|RHLB_PHOLL ATP-dependent RNA helicase RhlB OS=Photorhabdus 
laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 
/ TT01) OX=243265 GN=rhlB PE=3 SV=1
Length=428

 Score = 40.4 bits (93),  Expect = 0.043, Method: Compositional matrix adjust.
 Identities = 38/138 (28%), Positives = 62/138 (45%), Gaps = 20/138 (14%)

Query  346  PENP-KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI  404
            P N  K+ +L+ +L+ ++      R IIF  T+     +  W      L     R  LL 
Sbjct  238  PSNEEKMRLLQTLLEEEWPD----RCIIFANTKHRCEDI--WAH----LAADGHRVGLLT  287

Query  405  GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
            G         + Q+ +  ++++F +G +++LVAT VA  GL IP    V  Y L  +   
Sbjct  288  G--------DVAQKKRLRILEEFSNGNIDILVATDVAARGLHIPLVTHVFNYDLPDDCED  339

Query  465  MVQARGR-ARADQSVYAF  481
             V   GR  RA +S ++ 
Sbjct  340  YVHRIGRTGRAGESGHSI  357


>sp|A6ZUA1|DBP3_YEAS7 ATP-dependent RNA helicase DBP3 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=DBP3 PE=3 SV=1
Length=523

 Score = 40.8 bits (94),  Expect = 0.044, Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 2/84 (2%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR  473
            ++Q+ + + + +F+ G  NLL+AT VA  GLDIP+   V+           V   GR  R
Sbjct  393  LSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGR  452

Query  474  ADQSVYAF-VATEGSRELKRELIN  496
            A Q+  A  + TE  + L   L+N
Sbjct  453  AGQTGTAHTLFTEQEKHLAGGLVN  476


>sp|Q0HQL1|RHLB_SHESR ATP-dependent RNA helicase RhlB OS=Shewanella 
sp. (strain MR-7) OX=60481 GN=rhlB PE=3 SV=1
Length=439

 Score = 40.4 bits (93),  Expect = 0.045, Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 47/103 (46%), Gaps = 14/103 (14%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            + I+F+ T+ S  +L  WL+          R  LL G         + Q+ +  ++++F 
Sbjct  258  KAIVFSNTKHSCENLWSWLEGDGH------RVGLLTG--------DVPQKKRIRILEQFT  303

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
             G L++LVAT VA  GL I   + V  Y L  +    V   GR
Sbjct  304  QGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGR  346


>sp|Q0HN76|RHLB_SHESM ATP-dependent RNA helicase RhlB OS=Shewanella 
sp. (strain MR-4) OX=60480 GN=rhlB PE=3 SV=1
Length=439

 Score = 40.4 bits (93),  Expect = 0.045, Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 47/103 (46%), Gaps = 14/103 (14%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            + I+F+ T+ S  +L  WL+          R  LL G         + Q+ +  ++++F 
Sbjct  258  KAIVFSNTKHSCENLWSWLEGDGH------RVGLLTG--------DVPQKKRIRILEQFT  303

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
             G L++LVAT VA  GL I   + V  Y L  +    V   GR
Sbjct  304  QGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGR  346


>sp|B5YJW4|UVRB_THEYD UvrABC system protein B OS=Thermodesulfovibrio 
yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) OX=289376 
GN=uvrB PE=3 SV=1
Length=671

 Score = 40.8 bits (94),  Expect = 0.045, Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 63/126 (50%), Gaps = 22/126 (17%)

Query  352  EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ  411
            ++LE+I +R    S   R ++ T T++ A  L  +        TV I+A+ L        
Sbjct  438  DLLEEIHKR---VSRGERVLVTTITKKMAEDLTDYYT------TVGIKAKYL--------  480

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY-----GLLTNEISMV  466
             + +   ++ E+++  + G  ++L+  ++  EGLD+P  ++V  +     G L +E S++
Sbjct  481  HSDIDTLERVEILKDLRLGKFDVLIGVNLLREGLDLPEVSLVAIFDADKEGFLRSERSLI  540

Query  467  QARGRA  472
            Q  GRA
Sbjct  541  QTAGRA  546


>sp|B6J8A0|UVRB_COXB1 UvrABC system protein B OS=Coxiella burnetii 
(strain CbuK_Q154) OX=434924 GN=uvrB PE=3 SV=1
Length=672

 Score = 40.8 bits (94),  Expect = 0.045, Method: Compositional matrix adjust.
 Identities = 20/56 (36%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + G  ++LV  ++  EGLDIP  ++V      + G L +E S++Q  GRA
Sbjct  486  EIIRDLRLGVFDMLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTMGRA  541


>sp|P0CQ86|DBP5_CRYNJ ATP-dependent RNA helicase DBP5 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=DBP5 PE=3 SV=2
Length=518

 Score = 40.8 bits (94),  Expect = 0.045, Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 2/64 (3%)

Query  395  TVDIRAQLLIGAGNSSQSTHMTQRDQQE--VIQKFQDGTLNLLVATSVAEEGLDIPHCNV  452
            T D  A+ LI  G++  S H  +  Q+   ++  F++G   +L+ T+V   G+DIP  N+
Sbjct  372  TADHIAERLISEGHAVASLHGDKLSQERDAILDGFRNGETKVLITTNVIARGIDIPAVNM  431

Query  453  VVRY  456
            VV Y
Sbjct  432  VVNY  435


>sp|Q7W8V6|UVRB_BORPA UvrABC system protein B OS=Bordetella parapertussis 
(strain 12822 / ATCC BAA-587 / NCTC 13253) OX=257311 
GN=uvrB PE=3 SV=1
Length=675

 Score = 40.8 bits (94),  Expect = 0.046, Method: Compositional matrix adjust.
 Identities = 21/56 (38%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + G  ++LV  S+  EGLDIP  ++V      + G L +E S++Q  GRA
Sbjct  495  EIIRDLRLGVFDVLVGISLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA  550


>sp|Q1E2B2|DRS1_COCIM ATP-dependent RNA helicase DRS1 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=DRS1 PE=3 SV=1
Length=840

 Score = 40.8 bits (94),  Expect = 0.046, Method: Compositional matrix adjust.
 Identities = 49/182 (27%), Positives = 83/182 (46%), Gaps = 30/182 (16%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA-GNSSQSTH--MTQRDQQEVIQ  425
            R I+F R ++ AH                 RA+++ G  G  +   H  M+Q  +   ++
Sbjct  566  RVIVFFRQKKEAH-----------------RARIIFGLLGLKAAELHGSMSQEQRINAVE  608

Query  426  KFQDGTLNLLVATSVAEEGLDIPHCNVVVRY-GLLTNEISMVQARGRARADQSVYA-FVA  483
             F+DG +  L+AT +A  GLDI     V+ Y    ++EI + +    ARA +S  A  +A
Sbjct  609  AFRDGKVPFLLATDLASRGLDIKGVESVINYEAPQSHEIYLHRVGRTARAGRSGRACTIA  668

Query  484  TEGSRELKRELINEA-------LETLMEQAVAAVQKMDQAEYQAKIRD-LQQAALTKRAA  535
             E  R++ +  +          +  +++ AVA        E QA+I D L++    K+ A
Sbjct  669  AEPDRKVVKAAVKAGRAQGAKIVSRVVDPAVADEWASKVEEMQAEIEDILKEEKEEKQLA  728

Query  536  QA  537
            QA
Sbjct  729  QA  730


>sp|Q4I662|DBP8_GIBZE ATP-dependent RNA helicase DBP8 OS=Gibberella 
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / 
NRRL 31084 / PH-1) OX=229533 GN=DBP8 PE=3 SV=1
Length=547

 Score = 40.8 bits (94),  Expect = 0.046, Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
            +S  + + QR + + + +F+     +LVAT VA  GLDIP  ++V+ Y L  +    +  
Sbjct  399  TSLHSKLPQRQRIDNLARFRASAARILVATDVAARGLDIPEVSLVINYDLPRDPDDYIHR  458

Query  469  RGR-ARADQSVYAFVATEGSRELKRELINE  497
             GR ARA +   A V+  G R+++  L  E
Sbjct  459  VGRTARAGRKGEA-VSFVGQRDVELALTIE  487


>sp|A5DKW3|DRS1_PICGU ATP-dependent RNA helicase DRS1 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DRS1 PE=3 
SV=2
Length=705

 Score = 40.8 bits (94),  Expect = 0.046, Method: Compositional matrix adjust.
 Identities = 33/138 (24%), Positives = 64/138 (46%), Gaps = 16/138 (12%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            R ++F   ++ AH L + L               L+G   S     +TQ  + + ++ F+
Sbjct  449  RIVVFVSRKEMAHRLRIVLG--------------LLGMKVSELHGSLTQEQRLQSVKDFR  494

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGL-LTNEISMVQARGRARADQSVYAFVATEGS  487
               + +L+ T +A  GLDIP   +V+ + +  T+EI + +    ARA +   +     G 
Sbjct  495  SLAVPVLICTDLAARGLDIPKIEIVINFDMPKTHEIYLHRVGRTARAGREGRSITFV-GE  553

Query  488  RELKRELINEALETLMEQ  505
                R ++ +A+++L EQ
Sbjct  554  SNQDRSIVKDAIKSLEEQ  571


>sp|Q5L3G9|CSHA_GEOKA DEAD-box ATP-dependent RNA helicase CshA 
OS=Geobacillus kaustophilus (strain HTA426) OX=235909 GN=cshA 
PE=3 SV=1
Length=467

 Score = 40.4 bits (93),  Expect = 0.046, Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 65/139 (47%), Gaps = 25/139 (18%)

Query  347  ENPKLEMLEKILQRQFSSSNSPR-GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
            E  K ++L ++L  Q     +P   I+F RT++                 VD  A+ L  
Sbjct  224  EKKKFDILTRLLDIQ-----APELAIVFGRTKRR----------------VDELAEALNL  262

Query  406  AGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI  463
             G +++  H  ++Q  +  V++KF++G + +LVAT VA  GLDI     V  + +  +  
Sbjct  263  RGYAAEGIHGDLSQAKRLSVLRKFKEGAIEILVATDVAARGLDISGVTHVYNFDIPQDPE  322

Query  464  SMVQARGR-ARADQSVYAF  481
            S V   GR  RA ++  A 
Sbjct  323  SYVHRIGRTGRAGKTGVAM  341


>sp|Q63NE3|UVRB_BURPS UvrABC system protein B OS=Burkholderia 
pseudomallei (strain K96243) OX=272560 GN=uvrB PE=3 SV=1
Length=696

 Score = 40.8 bits (94),  Expect = 0.046, Method: Compositional matrix adjust.
 Identities = 37/134 (28%), Positives = 64/134 (48%), Gaps = 9/134 (7%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRARADQ  476
            E+I+  + GT ++LV  ++  EGLDIP  ++V      + G L  E S++Q  GRA  + 
Sbjct  506  EIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAARNV  565

Query  477  SVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA--KIRDLQQAALTKRA  534
            +  A +  +   +  R  I+E  E    + +A  +KM         +I+D+         
Sbjct  566  NGKALLYADRITDSMRRAIDET-ERRRAKQIAYNEKMGITPRGVVKRIKDIIDGVYNADE  624

Query  535  AQAAQRE-NQRQQF  547
            A+A  +E  QR +F
Sbjct  625  ARAELKEAQQRAKF  638


>sp|Q62CK6|UVRB_BURMA UvrABC system protein B OS=Burkholderia 
mallei (strain ATCC 23344) OX=243160 GN=uvrB PE=3 SV=1
Length=696

 Score = 40.8 bits (94),  Expect = 0.046, Method: Compositional matrix adjust.
 Identities = 37/134 (28%), Positives = 64/134 (48%), Gaps = 9/134 (7%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRARADQ  476
            E+I+  + GT ++LV  ++  EGLDIP  ++V      + G L  E S++Q  GRA  + 
Sbjct  506  EIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAARNV  565

Query  477  SVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA--KIRDLQQAALTKRA  534
            +  A +  +   +  R  I+E  E    + +A  +KM         +I+D+         
Sbjct  566  NGKALLYADRITDSMRRAIDET-ERRRAKQIAYNEKMGITPRGVVKRIKDIIDGVYNADE  624

Query  535  AQAAQRE-NQRQQF  547
            A+A  +E  QR +F
Sbjct  625  ARAELKEAQQRAKF  638


>sp|P20447|DBP3_YEAST ATP-dependent RNA helicase DBP3 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DBP3 
PE=1 SV=2
Length=523

 Score = 40.8 bits (94),  Expect = 0.047, Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 2/84 (2%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR  473
            ++Q+ + + + +F+ G  NLL+AT VA  GLDIP+   V+           V   GR  R
Sbjct  393  LSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGR  452

Query  474  ADQSVYAF-VATEGSRELKRELIN  496
            A Q+  A  + TE  + L   L+N
Sbjct  453  AGQTGTAHTLFTEQEKHLAGGLVN  476


>sp|Q921N6|DDX27_MOUSE Probable ATP-dependent RNA helicase DDX27 
OS=Mus musculus OX=10090 GN=Ddx27 PE=1 SV=3
Length=760

 Score = 40.8 bits (94),  Expect = 0.048, Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 63/132 (48%), Gaps = 20/132 (15%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            ++FT+T++ AH + + L             Q+    GN SQ+  +      E +++F+D 
Sbjct  433  MLFTQTKKQAHRMHILLGLLG--------LQVGELHGNLSQTQRL------EALRRFKDE  478

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR----ARADQSVYAFVATEG  486
             +++LVAT VA  GLDI     V+ + +       V   GR     RA +SV   +  E 
Sbjct  479  QIDILVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRSVS--LVGEE  536

Query  487  SRELKRELINEA  498
             R++ +E++  A
Sbjct  537  ERKMLKEIVKAA  548


>sp|P0CQ87|DBP5_CRYNB ATP-dependent RNA helicase DBP5 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=DBP5 PE=3 SV=1
Length=546

 Score = 40.4 bits (93),  Expect = 0.049, Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 2/64 (3%)

Query  395  TVDIRAQLLIGAGNSSQSTHMTQRDQQE--VIQKFQDGTLNLLVATSVAEEGLDIPHCNV  452
            T D  A+ LI  G++  S H  +  Q+   ++  F++G   +L+ T+V   G+DIP  N+
Sbjct  400  TADHIAERLISEGHAVASLHGDKLSQERDAILDGFRNGETKVLITTNVIARGIDIPAVNM  459

Query  453  VVRY  456
            VV Y
Sbjct  460  VVNY  463


>sp|A1D6X9|DBP8_NEOFI ATP-dependent RNA helicase dbp8 OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / 
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dbp8 
PE=3 SV=1
Length=526

 Score = 40.4 bits (93),  Expect = 0.049, Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 36/68 (53%), Gaps = 1/68 (1%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR  473
            + Q ++   + +F+     +LVAT VA  GLDIP  ++V+ Y +  N    V   GR AR
Sbjct  385  LPQSERNANLARFRASAARILVATDVASRGLDIPTVSLVINYDVPRNPDDYVHRVGRTAR  444

Query  474  ADQSVYAF  481
            A +S  A 
Sbjct  445  AGRSGEAI  452


>sp|B1KQF6|RHLB_SHEWM ATP-dependent RNA helicase RhlB OS=Shewanella 
woodyi (strain ATCC 51908 / MS32) OX=392500 GN=rhlB PE=3 
SV=1
Length=441

 Score = 40.4 bits (93),  Expect = 0.049, Method: Compositional matrix adjust.
 Identities = 26/90 (29%), Positives = 44/90 (49%), Gaps = 14/90 (16%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            + I+F+ T+ S  ++  WL+          R  LL G         + Q+ +  ++++F 
Sbjct  258  KAIVFSNTKHSCENVWSWLEGDGH------RVGLLTG--------DVPQKKRIRILEQFT  303

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGL  458
            +G L++LVAT VA  GL I   + V  Y L
Sbjct  304  EGKLDILVATDVAARGLHISDVSHVYNYDL  333


>sp|A4QSS5|DBP2_PYRO7 ATP-dependent RNA helicase DBP2 OS=Pyricularia 
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 
GN=DBP2 PE=3 SV=1
Length=548

 Score = 40.4 bits (93),  Expect = 0.049, Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 67/141 (48%), Gaps = 20/141 (14%)

Query  354  LEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQST  413
            +EK++  + S +   + +IF  T++ A  +  +L+Q  G   + I        G+  Q+ 
Sbjct  364  MEKVMDGKDSKN---KILIFVGTKRVADEITRFLRQD-GWPALSIH-------GDKQQN-  411

Query  414  HMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE---ISMVQARG  470
               +RD   V+ +F+ G   ++VAT VA  G+D+ +   V+ Y    N    I  +   G
Sbjct  412  ---ERDW--VLDQFKTGKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTG  466

Query  471  RARADQSVYAFVATEGSRELK  491
            RA A  +   F  TE S++ +
Sbjct  467  RAGAKGTAITFFTTENSKQAR  487


>sp|Q5APT8|DBP3_CANAL ATP-dependent RNA helicase DBP3 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DBP3 
PE=3 SV=1
Length=564

 Score = 40.4 bits (93),  Expect = 0.050, Method: Compositional matrix adjust.
 Identities = 26/85 (31%), Positives = 42/85 (49%), Gaps = 4/85 (5%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGR  471
            ++Q+ +   +  F+ G  NLL+AT VA  GLDIP+  VV+       + + +  +   GR
Sbjct  434  LSQQQRTAALSAFKSGQSNLLLATDVAARGLDIPNVKVVINLTFPLTIEDYVHRIGRTGR  493

Query  472  ARADQSVYAFVATEGSRELKRELIN  496
            A A  + +    TE  + L   L N
Sbjct  494  AGAKGTAHTLF-TEDEKHLSGALCN  517


>sp|Q9P735|FAL1_NEUCR ATP-dependent RNA helicase fal-1 OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / 
DSM 1257 / FGSC 987) OX=367110 GN=fal-1 PE=3 SV=2
Length=400

 Score = 40.4 bits (93),  Expect = 0.050, Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 3/86 (3%)

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
            SS    M Q+++  ++Q F+ G   +L++T V   G+D+   ++V+ Y L +N  + +  
Sbjct  293  SSMHGDMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHR  352

Query  469  RGRA-RADQSVYA--FVATEGSRELK  491
             GR+ R  +   A  FV +E  R L+
Sbjct  353  IGRSGRFGRKGVAINFVTSEDVRILR  378


>sp|O67708|UVRB_AQUAE UvrABC system protein B OS=Aquifex aeolicus 
(strain VF5) OX=224324 GN=uvrB PE=3 SV=1
Length=663

 Score = 40.8 bits (94),  Expect = 0.050, Method: Compositional matrix adjust.
 Identities = 27/130 (21%), Positives = 68/130 (52%), Gaps = 20/130 (15%)

Query  349  PKLEMLEKILQR-QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG  407
            PK+  LE +++  +       R ++ T T++ A  +  +L +++      IRA+ +    
Sbjct  429  PKMNQLENLVKEIKEVKKRKERALVLTTTKRLAEEIADYLTERK------IRAKYM----  478

Query  408  NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNE  462
                 + +   ++ ++I++ ++G+++++V  ++  EGLD+P  ++V      + G L + 
Sbjct  479  ----HSELDAIERAQLIRELREGSIDVIVGVNLLREGLDLPEVSLVAIMDADKEGFLRSY  534

Query  463  ISMVQARGRA  472
             +++Q  GRA
Sbjct  535  QALIQTIGRA  544


>sp|Q5H9U9|DDX6L_HUMAN Probable ATP-dependent RNA helicase DDX60-like 
OS=Homo sapiens OX=9606 GN=DDX60L PE=1 SV=3
Length=1706

 Score = 40.8 bits (94),  Expect = 0.051, Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 105/251 (42%), Gaps = 33/251 (13%)

Query  5    SYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHG  64
            ++Q E++    + ++ +I  PT +GKT A+ Y  ++ L   D   VV +     LV Q  
Sbjct  746  AWQQELLDVVDKNESAVIVAPTSSGKTYASYYCMEKVLRESDVGVVVYVAPAKSLVGQVA  805

Query  65   EEFRRMLDGRWTVTTLSGDMGPRAGFGHLAR--CHDLLIC-----TAELLQMALTSPEEE  117
                  ++ R+T T  +G    R   G   R  CH++L C       E  ++ L +P  +
Sbjct  806  A----TVENRFTKTLPAG----RTLCGAFTRDYCHNVLNCQVLITVPECFEILLLAPHRQ  857

Query  118  EHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASK  177
            + VE   +  ++ DE H+  ++     + +++ EL L   +    VL  T +        
Sbjct  858  KWVERIRY--VIFDEVHYLGRE-----VGAKFWELLLVIIRCPFLVLSATINNPNLLTKW  910

Query  178  LDGAINHVLQLCANLDTWCIMSPQ--NCCPQLQEHSQQPCKQYN----LCHRRSQDPFGD  231
            L     +  Q    ++  CI   Q   C   LQ+HS +  + Y     LC  R    + D
Sbjct  911  LQSVKQYWKQADKIMEEKCISEKQADKCLNFLQDHSYKN-QSYEVRLVLCGER----YND  965

Query  232  LLKKLMDQIHD  242
            L K +    HD
Sbjct  966  LEKHICSVKHD  976


>sp|A0KS84|RHLB_SHESA ATP-dependent RNA helicase RhlB OS=Shewanella 
sp. (strain ANA-3) OX=94122 GN=rhlB PE=3 SV=1
Length=439

 Score = 40.4 bits (93),  Expect = 0.051, Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 47/103 (46%), Gaps = 14/103 (14%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            + I+F+ T+ S  +L  WL+          R  LL G         + Q+ +  ++++F 
Sbjct  258  KAIVFSNTKHSCENLWSWLEGDGH------RVGLLTG--------DVPQKKRIRILEQFT  303

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
             G L++LVAT VA  GL I   + V  Y L  +    V   GR
Sbjct  304  QGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGR  346


>sp|P30958|MFD_ECOLI Transcription-repair-coupling factor OS=Escherichia 
coli (strain K12) OX=83333 GN=mfd PE=1 SV=2
Length=1148

 Score = 40.8 bits (94),  Expect = 0.052, Method: Compositional matrix adjust.
 Identities = 28/91 (31%), Positives = 45/91 (49%), Gaps = 16/91 (18%)

Query  400  AQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----  454
            A++ IG G       M +R+ + V+  F     N+LV T++ E G+DIP  N ++     
Sbjct  836  ARIAIGHG------QMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERAD  889

Query  455  RYGLLTNEISMVQARGR-ARADQSVYAFVAT  484
             +GL      + Q RGR  R+    YA++ T
Sbjct  890  HFGL----AQLHQLRGRVGRSHHQAYAWLLT  916


>sp|Q8EJQ5|RHLB_SHEON ATP-dependent RNA helicase RhlB OS=Shewanella 
oneidensis (strain ATCC 700550 / JCM 31522 / CIP 106686 
/ LMG 19005 / NCIMB 14063 / MR-1) OX=211586 GN=rhlB PE=3 SV=1
Length=439

 Score = 40.4 bits (93),  Expect = 0.052, Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 47/103 (46%), Gaps = 14/103 (14%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            + I+F+ T+ S  +L  WL+          R  LL G         + Q+ +  ++++F 
Sbjct  258  KAIVFSNTKHSCENLWSWLEGDGH------RVGLLTG--------DVPQKKRIRILEQFT  303

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
             G L++LVAT VA  GL I   + V  Y L  +    V   GR
Sbjct  304  QGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGR  346


>sp|A3LNL1|PRP28_PICST Pre-mRNA-splicing ATP-dependent RNA helicase 
PRP28 OS=Scheffersomyces stipitis (strain ATCC 58785 / 
CBS 6054 / NBRC 10063 / NRRL Y-11545) OX=322104 GN=PRP28 PE=3 
SV=2
Length=482

 Score = 40.4 bits (93),  Expect = 0.053, Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 69/164 (42%), Gaps = 22/164 (13%)

Query  342  ATHGPEN---PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI  398
            AT G E+    + + L +I+Q+    S     IIF   ++    L L L++      V I
Sbjct  310  ATGGSEDFDSKRFDKLVRIIQQHSRESRQFSIIIFANYKRVCDLLSLELEKNGFRDNVVI  369

Query  399  RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL  458
                             TQ  +++ I  F+     +L+AT VA  G+D+P+ ++VV + +
Sbjct  370  HGS-------------KTQELREKAISSFRSHESRILIATDVAARGIDVPNVSLVVNFQM  416

Query  459  ---LTNEISMVQARGRARADQSVYAFVATEGSR---ELKRELIN  496
                   +  +   GRA      Y F+    S    +LK+ L+N
Sbjct  417  SRKFDEYVHRIGRTGRAGNRGESYTFIDDSDSDVFIDLKKFLVN  460


>sp|Q46IE1|UVRB_PROMT UvrABC system protein B OS=Prochlorococcus 
marinus (strain NATL2A) OX=59920 GN=uvrB PE=3 SV=1
Length=678

 Score = 40.4 bits (93),  Expect = 0.053, Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 67/135 (50%), Gaps = 25/135 (19%)

Query  343  THGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL  402
            THG  +   ++L +I +R   +S + R ++ T T++ A  L  +L + +      IR + 
Sbjct  426  THGQVD---DLLFEIRKR---ASKNQRILVTTLTKRMAEDLTDYLSENK------IRVRY  473

Query  403  LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYG  457
            L          H  +R   E+IQ  + G  ++LV  ++  EGLD+P  ++VV     + G
Sbjct  474  L------HSEIHSIER--IEIIQDLRLGEYDVLVGVNLLREGLDLPEVSLVVILDADKEG  525

Query  458  LLTNEISMVQARGRA  472
             L  + S++Q  GRA
Sbjct  526  FLRAQRSLIQTIGRA  540


>sp|A2C5B3|UVRB_PROM1 UvrABC system protein B OS=Prochlorococcus 
marinus (strain NATL1A) OX=167555 GN=uvrB PE=3 SV=1
Length=678

 Score = 40.4 bits (93),  Expect = 0.053, Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 67/135 (50%), Gaps = 25/135 (19%)

Query  343  THGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL  402
            THG  +   ++L +I +R   +S + R ++ T T++ A  L  +L + +      IR + 
Sbjct  426  THGQVD---DLLFEIRKR---ASKNQRILVTTLTKRMAEDLTDYLSENK------IRVRY  473

Query  403  LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYG  457
            L          H  +R   E+IQ  + G  ++LV  ++  EGLD+P  ++VV     + G
Sbjct  474  L------HSEIHSIER--IEIIQDLRLGEYDVLVGVNLLREGLDLPEVSLVVILDADKEG  525

Query  458  LLTNEISMVQARGRA  472
             L  + S++Q  GRA
Sbjct  526  FLRAQRSLIQTIGRA  540


>sp|A4QU31|FAL1_PYRO7 ATP-dependent RNA helicase FAL1 OS=Pyricularia 
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 
GN=FAL1 PE=3 SV=1
Length=401

 Score = 40.4 bits (93),  Expect = 0.053, Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 3/86 (3%)

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
            SS    M Q+++  ++Q F+ G   +L++T V   G+D+   ++V+ Y L +N  + +  
Sbjct  294  SSMHGDMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHR  353

Query  469  RGRA-RADQSVYA--FVATEGSRELK  491
             GR+ R  +   A  FV +E  R L+
Sbjct  354  IGRSGRFGRKGVAINFVTSEDVRILR  379


>sp|Q12TR7|UVRB_METBU UvrABC system protein B OS=Methanococcoides 
burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) 
OX=259564 GN=uvrB PE=3 SV=1
Length=660

 Score = 40.4 bits (93),  Expect = 0.053, Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 5/69 (7%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRAR  473
            ++ E+I+  + G  ++LV  ++  EGLDIP    V      + G L +E S++Q  GRA 
Sbjct  484  ERAEIIRDLRKGVFDVLVGINLLREGLDIPEVAFVAILDADKEGFLRSERSLIQTMGRAS  543

Query  474  ADQSVYAFV  482
             +   Y  +
Sbjct  544  RNADGYVIL  552


>sp|A1SZG4|RHLB_PSYIN ATP-dependent RNA helicase RhlB OS=Psychromonas 
ingrahamii (strain DSM 17664 / CCUG 51855 / 37) OX=357804 
GN=rhlB PE=3 SV=1
Length=418

 Score = 40.4 bits (93),  Expect = 0.054, Method: Compositional matrix adjust.
 Identities = 28/104 (27%), Positives = 47/104 (45%), Gaps = 14/104 (13%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            + I+F  T+ +   +  +L          +R  LL G         + Q  + +++Q+F 
Sbjct  258  KAIVFANTKHTCEKVWGYLAGD------GLRTGLLTG--------DVPQNKRLKILQQFT  303

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA  472
            DG +++LVAT VA  GL IP  + V  + L  +    V   GR 
Sbjct  304  DGEIDILVATDVAARGLHIPKVSHVFNFDLPDDCEDYVHRIGRT  347


>sp|Q3ITS0|UVRB_NATPD UvrABC system protein B OS=Natronomonas 
pharaonis (strain ATCC 35678 / DSM 2160 / CIP 103997 / JCM 8858 
/ NBRC 14720 / NCIMB 2260 / Gabara) OX=348780 GN=uvrB PE=3 
SV=1
Length=683

 Score = 40.4 bits (93),  Expect = 0.054, Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 72/165 (44%), Gaps = 33/165 (20%)

Query  349  PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN  408
            P  + +E +++R  ++    R ++ T T++ A  L  +L+                G   
Sbjct  438  PAEKQVEDLIERIQATPEDERVLVTTLTKRMAEDLTEYLEN--------------AGVDV  483

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEI  463
            +         ++ E+++  + G + +LV  ++  EGLDIP  ++V      + G L +E 
Sbjct  484  AYMHDETDTLERHELVRSLRLGEIQVLVGINLLREGLDIPEVSLVAILDADQEGFLRSET  543

Query  464  SMVQARGRA----------RADQSVYAFVA----TEGSRELKREL  494
            ++VQ  GRA           AD++  +  A    T   RE++RE 
Sbjct  544  TLVQTMGRAARNVEGSVVLYADETTDSMAAAIEETRRRREIQREF  588


>sp|P43809|RECG_HAEIN ATP-dependent DNA helicase RecG OS=Haemophilus 
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) 
OX=71421 GN=recG PE=3 SV=1
Length=693

 Score = 40.4 bits (93),  Expect = 0.054, Method: Compositional matrix adjust.
 Identities = 15/40 (38%), Positives = 32/40 (80%), Gaps = 0/40 (0%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV  454
            M  +++Q+V+ +F++  L+LLVAT+V E G+D+P+ ++++
Sbjct  527  MKPQEKQDVMMRFKNAELDLLVATTVIEVGVDVPNASLMI  566


>sp|B7KC96|UVRB_GLOC7 UvrABC system protein B OS=Gloeothece citriformis 
(strain PCC 7424) OX=65393 GN=uvrB PE=3 SV=1
Length=665

 Score = 40.4 bits (93),  Expect = 0.055, Method: Compositional matrix adjust.
 Identities = 27/109 (25%), Positives = 55/109 (50%), Gaps = 19/109 (17%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            R +I T T++ A  L  + Q++       ++ Q L         + ++  ++ E++Q  +
Sbjct  446  RVLITTLTKRMAEDLTEYFQER------GVKVQYL--------HSEISSIERIEILQNLR  491

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            +G  ++L+  ++  EGLD+P  ++V      + G L  E S++Q  GRA
Sbjct  492  EGEFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRA  540


>sp|Q761Z9|RH18_ORYSJ DEAD-box ATP-dependent RNA helicase 18 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os01g0164500 PE=1 
SV=2
Length=647

 Score = 40.4 bits (93),  Expect = 0.055, Method: Compositional matrix adjust.
 Identities = 24/69 (35%), Positives = 36/69 (52%), Gaps = 1/69 (1%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR  473
            M Q  +++ +  F   +  +LV T VA  GLDIPH +++V+Y    +    +   GR AR
Sbjct  322  MKQGPREKALASFSALSSGILVCTDVAARGLDIPHVDLIVQYDPPQDPNVFIHRAGRTAR  381

Query  474  ADQSVYAFV  482
             DQ   A V
Sbjct  382  YDQEGDAIV  390


>sp|Q473K3|UVRB_CUPPJ UvrABC system protein B OS=Cupriavidus pinatubonensis 
(strain JMP 134 / LMG 1197) OX=264198 GN=uvrB 
PE=3 SV=1
Length=695

 Score = 40.4 bits (93),  Expect = 0.055, Method: Compositional matrix adjust.
 Identities = 21/56 (38%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + GT ++LV  ++  EGLDIP  ++V      + G L  E S++Q  GRA
Sbjct  505  EIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRA  560


>sp|Q0D1K3|PRP5_ASPTN Pre-mRNA-processing ATP-dependent RNA helicase 
prp5 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) 
OX=341663 GN=prp5 PE=3 SV=1
Length=1181

 Score = 40.8 bits (94),  Expect = 0.056, Method: Compositional matrix adjust.
 Identities = 33/114 (29%), Positives = 52/114 (46%), Gaps = 20/114 (18%)

Query  347  ENPKLEMLEKILQRQFSSSNS--PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI  404
            E+ K   L ++L   +SS  +   R +IF   +++A +LL  L ++              
Sbjct  779  EDKKFVRLLELLGNLYSSDENEDARALIFVERQEAADTLLRELMRK--------------  824

Query  405  GAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY  456
              G    S H    Q D+   I+ F+ G   +L+ATSVA  GLD+    +VV Y
Sbjct  825  --GYPCMSIHGGKDQIDRDSTIEDFKAGIFPVLIATSVAARGLDVKQLKLVVNY  876


>sp|P32892|DRS1_YEAST ATP-dependent RNA helicase DRS1 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DRS1 
PE=1 SV=2
Length=752

 Score = 40.4 bits (93),  Expect = 0.058, Method: Compositional matrix adjust.
 Identities = 24/101 (24%), Positives = 46/101 (46%), Gaps = 14/101 (14%)

Query  358  LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ  417
            L R+   +   R ++F   +++AH L + +               L+G         +TQ
Sbjct  470  LIRKLDPTGQKRIVVFVARKETAHRLRIIMG--------------LLGMSVGELHGSLTQ  515

Query  418  RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL  458
              + + + KF++  + +L+ T +A  GLDIP   VV+ Y +
Sbjct  516  EQRLDSVNKFKNLEVPVLICTDLASRGLDIPKIEVVINYDM  556


>sp|A7A0P8|DRS1_YEAS7 ATP-dependent RNA helicase DRS1 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=DRS1 PE=3 SV=1
Length=754

 Score = 40.4 bits (93),  Expect = 0.058, Method: Compositional matrix adjust.
 Identities = 24/101 (24%), Positives = 46/101 (46%), Gaps = 14/101 (14%)

Query  358  LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ  417
            L R+   +   R ++F   +++AH L + +               L+G         +TQ
Sbjct  472  LIRKLDPTGQKRIVVFVARKETAHRLRIIMG--------------LLGMSVGELHGSLTQ  517

Query  418  RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL  458
              + + + KF++  + +L+ T +A  GLDIP   VV+ Y +
Sbjct  518  EQRLDSVNKFKNLEVPVLICTDLASRGLDIPKIEVVINYDM  558


>sp|Q75NR7|RECQ4_MOUSE ATP-dependent DNA helicase Q4 OS=Mus musculus 
OX=10090 GN=Recql4 PE=2 SV=2
Length=1216

 Score = 40.4 bits (93),  Expect = 0.058, Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 13/140 (9%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARA  474
            M+ ++++ V Q F  G L ++VAT     GLD P    V+  GL  +  S VQA GRA  
Sbjct  770  MSSQERRRVQQAFMRGHLRMVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAIGRAGR  829

Query  475  DQS---VYAFVATEGSR--ELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAA  529
            D      + F+  +G    EL+R    ++ + L      AV+++ Q  +        Q  
Sbjct  830  DGKPAHCHLFMHPQGEDLWELRRHAHADSTDFL------AVKRLVQRVFPPCT--CSQRP  881

Query  530  LTKRAAQAAQRENQRQQFPV  549
            ++K + +  +  + +Q +PV
Sbjct  882  VSKSSPEEVKEHSGQQTYPV  901


>sp|Q0CLX0|PRP28_ASPTN Pre-mRNA-splicing ATP-dependent RNA helicase 
prp28 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) 
OX=341663 GN=prp28 PE=3 SV=1
Length=783

 Score = 40.4 bits (93),  Expect = 0.058, Method: Compositional matrix adjust.
 Identities = 31/107 (29%), Positives = 57/107 (53%), Gaps = 8/107 (7%)

Query  407  GNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
            G SS + H   TQ  ++  +   ++G+ ++LVAT +A  G+D+P  ++VV + + T+  S
Sbjct  646  GFSSVTLHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMATSIES  705

Query  465  MVQARGR-ARADQSVYA--FVATEGSR---ELKRELINEALETLMEQ  505
                 GR  RA +S  A  F+  E +    +LK+ LI   +  + ++
Sbjct  706  YTHRIGRTGRAGKSGVAITFLGNEDADVMYDLKQMLIKSPISRVPDE  752


>sp|A5DLE0|DBP8_PICGU ATP-dependent RNA helicase DBP8 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DBP8 PE=3 
SV=2
Length=433

 Score = 40.0 bits (92),  Expect = 0.058, Method: Compositional matrix adjust.
 Identities = 26/88 (30%), Positives = 45/88 (51%), Gaps = 9/88 (10%)

Query  390  QQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPH  449
            ++ L+ +DIR         +S  + M Q ++   + +F+ G   +L+AT VA  GLDIP+
Sbjct  270  RRTLRKLDIRV--------ASLHSEMPQSERTNSLHRFRAGAARVLIATDVASRGLDIPN  321

Query  450  CNVVVRYGLLTNEISMVQARGR-ARADQ  476
              +VV   +  +    +   GR ARA +
Sbjct  322  VELVVNQDIPADPDDYIHRVGRTARAGK  349


>sp|Q6FS54|DBP3_CANGA ATP-dependent RNA helicase DBP3 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DBP3 PE=3 SV=1
Length=540

 Score = 40.4 bits (93),  Expect = 0.059, Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 2/84 (2%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR  473
            ++Q+ + + + +F+ G  NLL+AT VA  GLDIP+   V+           V   GR  R
Sbjct  410  LSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGR  469

Query  474  ADQSVYA-FVATEGSRELKRELIN  496
            A Q+  A  + TE  + L   L+N
Sbjct  470  AGQTGTAHTLFTEQEKHLAGGLVN  493


>sp|Q9PA24|RHLB_XYLFA ATP-dependent RNA helicase RhlB OS=Xylella 
fastidiosa (strain 9a5c) OX=160492 GN=rhlB PE=3 SV=2
Length=543

 Score = 40.4 bits (93),  Expect = 0.059, Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 37/73 (51%), Gaps = 3/73 (4%)

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
            S  + QR ++ ++ +FQ G L +LVAT VA  GL I   N V  Y L  +    V   GR
Sbjct  288  SGDVPQRKRETLLNRFQKGQLEILVATDVAARGLHIDGVNYVYNYDLPFDAEDYVHRIGR  347

Query  472  -AR--ADQSVYAF  481
             AR  AD    +F
Sbjct  348  TARLGADGDAISF  360


>sp|A4XKY5|UVRB_CALS8 UvrABC system protein B OS=Caldicellulosiruptor 
saccharolyticus (strain ATCC 43494 / DSM 8903 / Tp8T 
6331) OX=351627 GN=uvrB PE=3 SV=1
Length=661

 Score = 40.4 bits (93),  Expect = 0.061, Method: Compositional matrix adjust.
 Identities = 29/109 (27%), Positives = 55/109 (50%), Gaps = 19/109 (17%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            R +I T T++ A SL  +L+       V IR + +         + +   ++ ++I+  +
Sbjct  446  RVLITTLTKKMAESLTEYLKD------VGIRVRYM--------HSDIDTIERMQIIRDLR  491

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
             G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  492  LGKFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRA  540


>sp|Q5HK76|HSDR_STAEQ Type I restriction enzyme SepRPIP endonuclease 
subunit OS=Staphylococcus epidermidis (strain ATCC 35984 
/ DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A) 
OX=176279 GN=hsdR PE=3 SV=1
Length=930

 Score = 40.4 bits (93),  Expect = 0.061, Method: Compositional matrix adjust.
 Identities = 52/203 (26%), Positives = 80/203 (39%), Gaps = 33/203 (16%)

Query  1    MELRSYQW---EVIMP-ALE-GKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVN  55
            M LR YQ    E I+  ALE   N  IW  TG+GKT  +   ++   +  +  KV+ LV+
Sbjct  239  MALRPYQVYAVEAILNRALETNNNGYIWHTTGSGKTLTSFKASQLLSQEENIKKVIFLVD  298

Query  56   RVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLAR-CHDLLICTAELLQMALTSP  114
            R  L  Q   EF +  +     T        R     LA     L++ T + +  A+ S 
Sbjct  299  RKDLDNQTLAEFNKFQEDSVDFTD-----NTRKLLKQLADPTLPLIVTTIQKMANAVKSN  353

Query  115  EE--EEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASP--  170
                E + +  V  + ++DECH T    ++ +I   +            Q  G T +P  
Sbjct  354  HSVMESYKQDKV--IFIIDECHRTQFGDMHRLIKQHF---------ENAQYFGFTGTPRF  402

Query  171  -------GTGGASKLDGAINHVL  186
                   G   A   D  ++H L
Sbjct  403  EENKSQDGRATADIFDKCLHHYL  425


>sp|Q8Y0N2|UVRB_RALN1 UvrABC system protein B OS=Ralstonia nicotianae 
(strain ATCC BAA-1114 / GMI1000) OX=267608 GN=uvrB PE=3 
SV=1
Length=696

 Score = 40.4 bits (93),  Expect = 0.062, Method: Compositional matrix adjust.
 Identities = 21/56 (38%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + GT ++LV  ++  EGLDIP  ++V      + G L  E S++Q  GRA
Sbjct  506  EIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRA  561


>sp|A8G0U0|RHLB_SHESH ATP-dependent RNA helicase RhlB OS=Shewanella 
sediminis (strain HAW-EB3) OX=425104 GN=rhlB PE=3 SV=1
Length=435

 Score = 40.0 bits (92),  Expect = 0.062, Method: Compositional matrix adjust.
 Identities = 33/123 (27%), Positives = 54/123 (44%), Gaps = 18/123 (15%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L  +L+  +      + I+F+ T+ S   L  WL+          R  LL G    
Sbjct  243  KMRLLLTLLEEDWPD----KAIVFSNTKHSCEKLWSWLEGDGH------RVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q+ +  +++ F +G L++LVAT VA  GL I   + V  Y L  +    V   
Sbjct  289  ----DVPQKKRIRILELFTEGKLDVLVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRI  344

Query  470  GRA  472
            GR 
Sbjct  345  GRT  347


>sp|P24782|DBP2_SCHPO ATP-dependent RNA helicase dbp2 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=dbp2 
PE=2 SV=2
Length=550

 Score = 40.4 bits (93),  Expect = 0.062, Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 62/129 (48%), Gaps = 18/129 (14%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            +IFT T++ A  +  +L+Q  G   + I        G+ +Q     +RD   V+ +F+ G
Sbjct  373  LIFTGTKRVADDITRFLRQD-GWPALAIH-------GDKAQD----ERDW--VLNEFRTG  418

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE---ISMVQARGRARADQSVYAFVATEGS  487
               ++VAT VA  G+D+     V  Y    N    +  +   GRA A  + Y +  ++ +
Sbjct  419  KSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNA  478

Query  488  RELKRELIN  496
            ++  REL++
Sbjct  479  KQA-RELVS  486


>sp|Q86XP3|DDX42_HUMAN ATP-dependent RNA helicase DDX42 OS=Homo 
sapiens OX=9606 GN=DDX42 PE=1 SV=1
Length=938

 Score = 40.4 bits (93),  Expect = 0.063, Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 35/69 (51%), Gaps = 1/69 (1%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR  473
            M Q ++ +VI  F+   + +LVAT VA  GLDIP    V+ Y +  +  +     GR  R
Sbjct  532  MDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGR  591

Query  474  ADQSVYAFV  482
            A +   A+ 
Sbjct  592  AGEKGVAYT  600


>sp|Q5R7D1|DDX42_PONAB ATP-dependent RNA helicase DDX42 OS=Pongo 
abelii OX=9601 GN=DDX42 PE=2 SV=1
Length=942

 Score = 40.4 bits (93),  Expect = 0.064, Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 35/69 (51%), Gaps = 1/69 (1%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR  473
            M Q ++ +VI  F+   + +LVAT VA  GLDIP    V+ Y +  +  +     GR  R
Sbjct  532  MDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGR  591

Query  474  ADQSVYAFV  482
            A +   A+ 
Sbjct  592  AGEKGVAYT  600


>sp|A9KCU2|UVRB_COXBN UvrABC system protein B OS=Coxiella burnetii 
(strain Dugway 5J108-111) OX=434922 GN=uvrB PE=3 SV=1
Length=672

 Score = 40.4 bits (93),  Expect = 0.064, Method: Compositional matrix adjust.
 Identities = 20/56 (36%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + G  ++LV  ++  EGLDIP  ++V      + G L +E S++Q  GRA
Sbjct  486  EIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTMGRA  541


>sp|Q83E18|UVRB_COXBU UvrABC system protein B OS=Coxiella burnetii 
(strain RSA 493 / Nine Mile phase I) OX=227377 GN=uvrB 
PE=3 SV=1
Length=672

 Score = 40.4 bits (93),  Expect = 0.064, Method: Compositional matrix adjust.
 Identities = 20/56 (36%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + G  ++LV  ++  EGLDIP  ++V      + G L +E S++Q  GRA
Sbjct  486  EIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTMGRA  541


>sp|A9NC09|UVRB_COXBR UvrABC system protein B OS=Coxiella burnetii 
(strain RSA 331 / Henzerling II) OX=360115 GN=uvrB PE=3 
SV=1
Length=672

 Score = 40.4 bits (93),  Expect = 0.064, Method: Compositional matrix adjust.
 Identities = 20/56 (36%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + G  ++LV  ++  EGLDIP  ++V      + G L +E S++Q  GRA
Sbjct  486  EIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTMGRA  541


>sp|B6J1E8|UVRB_COXB2 UvrABC system protein B OS=Coxiella burnetii 
(strain CbuG_Q212) OX=434923 GN=uvrB PE=3 SV=1
Length=672

 Score = 40.4 bits (93),  Expect = 0.064, Method: Compositional matrix adjust.
 Identities = 20/56 (36%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + G  ++LV  ++  EGLDIP  ++V      + G L +E S++Q  GRA
Sbjct  486  EIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTMGRA  541


>sp|Q4JG17|VASAL_PENVA Probable ATP-dependent RNA helicase vasa-like 
OS=Penaeus vannamei OX=6689 GN=vasa PE=2 SV=2
Length=703

 Score = 40.4 bits (93),  Expect = 0.064, Method: Compositional matrix adjust.
 Identities = 35/121 (29%), Positives = 58/121 (48%), Gaps = 18/121 (15%)

Query  351  LEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSS  410
            +EM E+IL     S++  + ++F   ++ A  +  +L +++       RA  + G     
Sbjct  504  VEMCEEILI----SADDEKILVFVEQKRVADFVGTYLCEKK------FRATTMHG-----  548

Query  411  QSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARG  470
               +  QR+Q   + +F+ G  N+LVAT+V   GLDI    VVV Y L  +    V   G
Sbjct  549  -DRYQAQREQ--ALSEFRTGVHNILVATAVTARGLDIKGIGVVVNYDLPKDIDEYVHRIG  605

Query  471  R  471
            R
Sbjct  606  R  606


>sp|Q8SQK9|DHH1_ENCCU ATP-dependent RNA helicase DHH1 OS=Encephalitozoon 
cuniculi (strain GB-M1) OX=284813 GN=DHH1 PE=3 SV=2
Length=487

 Score = 40.0 bits (92),  Expect = 0.065, Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 40/82 (49%), Gaps = 2/82 (2%)

Query  393  LQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHC  450
            ++TV++ A  +   G  S   H  M Q D+  V   F  G   +LVAT +   G+D P+ 
Sbjct  353  IKTVELLAMKITEMGLPSYFIHSKMAQEDRNIVFHNFLKGKCKILVATDLITRGVDAPNT  412

Query  451  NVVVRYGLLTNEISMVQARGRA  472
            N V+ + +  +  S +   GRA
Sbjct  413  NYVINFDISKSPESYLHRIGRA  434


>sp|Q9JIK5|DDX21_MOUSE Nucleolar RNA helicase 2 OS=Mus musculus 
OX=10090 GN=Ddx21 PE=1 SV=3
Length=851

 Score = 40.4 bits (93),  Expect = 0.066, Method: Compositional matrix adjust.
 Identities = 29/94 (31%), Positives = 47/94 (50%), Gaps = 19/94 (20%)

Query  364  SSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQ  421
            S +  R IIF  T++ A  L          Q   I+          +QS H  + Q+ ++
Sbjct  507  SGHQGRTIIFCETKKDAQELS---------QNTCIK--------QDAQSLHGDIPQKQRE  549

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVR  455
              ++ F++G   +LVAT+VA  GLDIP  ++VV+
Sbjct  550  ITLKGFRNGNFGVLVATNVAARGLDIPEVDLVVQ  583


>sp|Q11Z64|UVRB_CYTH3 UvrABC system protein B OS=Cytophaga hutchinsonii 
(strain ATCC 33406 / DSM 1761 / CIP 103989 / NBRC 
15051 / NCIMB 9469 / D465) OX=269798 GN=uvrB PE=3 SV=1
Length=673

 Score = 40.4 bits (93),  Expect = 0.066, Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 43/80 (54%), Gaps = 7/80 (9%)

Query  400  AQLLIGAGNSSQSTHMTQR--DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV---  454
             + L G G  ++  H   +  D+ E++++ + G  ++LV  ++  EGLD+P  ++V    
Sbjct  461  TKFLDGVGVRTRYIHSEVKTLDRVEILRELRLGVFDVLVGVNLLREGLDLPEVSLVAIMD  520

Query  455  --RYGLLTNEISMVQARGRA  472
              + G L N  S+VQ  GRA
Sbjct  521  ADKEGFLRNVRSLVQTIGRA  540


>sp|Q5B0J9|DBP2_EMENI ATP-dependent RNA helicase dbp2 OS=Emericella 
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 
194 / M139) OX=227321 GN=dbp2 PE=3 SV=1
Length=563

 Score = 40.0 bits (92),  Expect = 0.066, Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 70/150 (47%), Gaps = 27/150 (18%)

Query  351  LEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSS  410
            ++ LEKI++ + +     + ++FT T++ A  +  +L+Q                 G  +
Sbjct  376  IKHLEKIMENRGN-----KCLVFTGTKRIADEITRFLRQD----------------GWPA  414

Query  411  QSTHMTQRDQQE--VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE---ISM  465
             S H  ++ Q+   V+ +F+ G   ++VAT VA  G+D+     V+ Y    N    +  
Sbjct  415  LSIHGDKQQQERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVINYDYPNNSEDYVHR  474

Query  466  VQARGRARADQSVYAFVATEGSRELKRELI  495
            +   GRA A  +   F  T+ +++  R+L+
Sbjct  475  IGRTGRAGAKGTAITFFTTDNAKQ-ARDLV  503


>sp|A7EM88|FAL1_SCLS1 ATP-dependent RNA helicase fal1 OS=Sclerotinia 
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 
GN=fal1 PE=3 SV=1
Length=399

 Score = 40.0 bits (92),  Expect = 0.067, Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 3/86 (3%)

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
            SS    M Q+++  ++Q F+ G   +L++T V   G+D+   ++V+ Y L  N  + +  
Sbjct  292  SSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPVNRENYIHR  351

Query  469  RGRA-RADQSVYA--FVATEGSRELK  491
             GR+ R  +   A  FV +E  R L+
Sbjct  352  IGRSGRFGRKGVAINFVTSEDVRILR  377


>sp|A6S4N4|FAL1_BOTFB ATP-dependent RNA helicase fal1 OS=Botryotinia 
fuckeliana (strain B05.10) OX=332648 GN=fal1 PE=3 SV=1
Length=399

 Score = 40.0 bits (92),  Expect = 0.067, Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 3/86 (3%)

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
            SS    M Q+++  ++Q F+ G   +L++T V   G+D+   ++V+ Y L  N  + +  
Sbjct  292  SSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPVNRENYIHR  351

Query  469  RGRA-RADQSVYA--FVATEGSRELK  491
             GR+ R  +   A  FV +E  R L+
Sbjct  352  IGRSGRFGRKGVAINFVTSEDVRILR  377


>sp|Q810A7|DDX42_MOUSE ATP-dependent RNA helicase DDX42 OS=Mus 
musculus OX=10090 GN=Ddx42 PE=1 SV=3
Length=929

 Score = 40.4 bits (93),  Expect = 0.067, Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 35/69 (51%), Gaps = 1/69 (1%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR  473
            M Q ++ +VI  F+   + +LVAT VA  GLDIP    V+ Y +  +  +     GR  R
Sbjct  532  MDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGR  591

Query  474  ADQSVYAFV  482
            A +   A+ 
Sbjct  592  AGEKGVAYT  600


>sp|Q879Y6|RHLB_XYLFT ATP-dependent RNA helicase RhlB OS=Xylella 
fastidiosa (strain Temecula1 / ATCC 700964) OX=183190 GN=rhlB 
PE=3 SV=1
Length=543

 Score = 40.0 bits (92),  Expect = 0.068, Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 37/73 (51%), Gaps = 3/73 (4%)

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
            S  + QR ++ ++ +FQ G L +LVAT VA  GL I   N V  Y L  +    V   GR
Sbjct  288  SGDVPQRKRETLLNRFQKGQLEILVATDVAARGLHIDGVNYVYNYDLPFDAEDYVHRIGR  347

Query  472  -AR--ADQSVYAF  481
             AR  AD    +F
Sbjct  348  TARLGADGDAISF  360


>sp|Q3JC03|UVRB_NITOC UvrABC system protein B OS=Nitrosococcus 
oceani (strain ATCC 19707 / BCRC 17464 / JCM 30415 / NCIMB 
11848 / C-107) OX=323261 GN=uvrB PE=3 SV=1
Length=687

 Score = 40.0 bits (92),  Expect = 0.068, Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 63/126 (50%), Gaps = 22/126 (17%)

Query  352  EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ  411
            ++L +I QR   ++   R ++   T++ A  L  +L+Q +      +R + L        
Sbjct  433  DLLSEIRQR---TAADERVLVTVLTKRMAEDLTQYLEQHE------VRVRYL--------  475

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMV  466
             + +   ++ E+I+  + G  ++LV  ++  EGLDIP  ++V      + G L +E S++
Sbjct  476  HSDIDTVERVEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLI  535

Query  467  QARGRA  472
            Q  GRA
Sbjct  536  QTIGRA  541


>sp|Q3B8Q1|DDX21_RAT Nucleolar RNA helicase 2 OS=Rattus norvegicus 
OX=10116 GN=Ddx21 PE=2 SV=1
Length=782

 Score = 40.4 bits (93),  Expect = 0.069, Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 19/110 (17%)

Query  364  SSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQ  421
            S +  R IIF  T++ A  L          Q   I+          +QS H  + Q+ ++
Sbjct  431  SGHQGRTIIFCETKKDAQELS---------QNTCIK--------QDAQSLHGDIPQKQRE  473

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
              ++ F++G   +LVAT+VA  GLDIP  ++VV+     +  S +   GR
Sbjct  474  ITLKGFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGR  523


>sp|A5DU73|PRP28_LODEL Pre-mRNA-splicing ATP-dependent RNA helicase 
PRP28 OS=Lodderomyces elongisporus (strain ATCC 11503 
/ CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) OX=379508 
GN=PRP28 PE=3 SV=1
Length=597

 Score = 40.0 bits (92),  Expect = 0.071, Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 67/155 (43%), Gaps = 18/155 (12%)

Query  331  FDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQ  390
             D+      +L+T+  E+ +L  L K++Q     + +   IIF   +     L L L+Q 
Sbjct  426  LDNIDQHFDYLSTYA-ESARLSKLIKVVQGHKRRNRNALVIIFANFKHVCDVLSLELEQN  484

Query  391  QGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHC  450
              L  V          G+ SQ        ++E ++ F+     +LVAT VA  G+D+P+ 
Sbjct  485  NLLNVVI--------HGSKSQEA------REEALEDFRTHQAPILVATDVAARGIDVPNV  530

Query  451  NVVVRYGL---LTNEISMVQARGRARADQSVYAFV  482
            ++V+ Y +       I  +   GRA      Y F+
Sbjct  531  SLVINYQMSKKFDEYIHRIGRTGRAGNLGESYTFL  565


>sp|O29889|XPB_ARCFU DNA 3'-5' translocase XPB OS=Archaeoglobus 
fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 
/ VC-16) OX=224325 GN=xpb PE=1 SV=1
Length=452

 Score = 40.0 bits (92),  Expect = 0.071, Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 25/106 (24%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+  L +IL+R        + IIFTR     H+ L++           I    LI A   
Sbjct  316  KIRKLREILERH----RKDKIIIFTR-----HNELVY----------RISKVFLIPA---  353

Query  410  SQSTHMTQRDQ-QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV  454
               TH T R++ +E+++ F+ G    +V++ V +EG+D+P  NV V
Sbjct  354  --ITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGV  397


>sp|Q88LF9|UVRB_PSEPK UvrABC system protein B OS=Pseudomonas putida 
(strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 
/ KT2440) OX=160488 GN=uvrB PE=3 SV=1
Length=671

 Score = 40.0 bits (92),  Expect = 0.071, Method: Compositional matrix adjust.
 Identities = 20/56 (36%), Positives = 34/56 (61%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + GT ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  485  EIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  540


>sp|Q5BDW4|PRP5_EMENI Pre-mRNA-processing ATP-dependent RNA helicase 
prp5 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 
/ CBS 112.46 / NRRL 194 / M139) OX=227321 GN=prp5 PE=3 SV=1
Length=1173

 Score = 40.4 bits (93),  Expect = 0.073, Method: Compositional matrix adjust.
 Identities = 41/148 (28%), Positives = 63/148 (43%), Gaps = 19/148 (13%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQK  426
            R +IF   +++A +LL  L ++                G    S H    Q D+   I+ 
Sbjct  795  RSLIFVDRQEAADTLLRELMRK----------------GYPCMSIHGGKDQIDRDSTIED  838

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATE  485
            F+ G   +L+ATSVA  GLD+    +VV Y    +    V   GR  RA  +  A     
Sbjct  839  FKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLT  898

Query  486  GSRELKRELINEALETLMEQAVAAVQKM  513
              +E     I +AL+   ++   AVQK+
Sbjct  899  EDQERYSVDIAKALKQSGQEVPEAVQKL  926


>sp|Q2H0R2|DBP10_CHAGB ATP-dependent RNA helicase DBP10 OS=Chaetomium 
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / 
NBRC 6347 / NRRL 1970) OX=306901 GN=DBP10 PE=3 SV=1
Length=762

 Score = 40.0 bits (92),  Expect = 0.073, Method: Compositional matrix adjust.
 Identities = 32/116 (28%), Positives = 55/116 (47%), Gaps = 6/116 (5%)

Query  375  RTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTL  432
            + + + HS +++   +  ++ +   A LL  AG S    +  + Q  ++  +  F+ G  
Sbjct  357  KEKPTEHSTIIFTATKHHVEYI---AHLLRHAGFSVSYIYGSLDQTARKIQVDNFRRGRT  413

Query  433  NLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGS  487
            N+LV T VA  G+DIP    V+ Y         V   GR ARA Q  +A+   +G+
Sbjct  414  NILVVTDVAARGIDIPVLANVINYDFPPQPKIFVHRVGRTARAGQRGWAYALLQGT  469


>sp|B4F1V3|RHLB_PROMH ATP-dependent RNA helicase RhlB OS=Proteus 
mirabilis (strain HI4320) OX=529507 GN=rhlB PE=3 SV=1
Length=432

 Score = 40.0 bits (92),  Expect = 0.074, Method: Compositional matrix adjust.
 Identities = 47/197 (24%), Positives = 79/197 (40%), Gaps = 31/197 (16%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +++ ++      R IIF  T+     +  W      L     R  LL G    
Sbjct  243  KMRLLQTLIEEEWPE----RCIIFANTKHRCDDI--WAH----LAADGHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMV  466
                 + Q+ +  +++ F  G +++LVAT VA  GL IP    V  Y L     + +  +
Sbjct  289  ----DVPQKKRLRILEDFTQGNIDILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRI  344

Query  467  QARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQ  526
               GRA    +  +    E +  L       A+ET ++ A+  V K +     A + DL 
Sbjct  345  GRTGRAGKSGNSISLACEEYALNLP------AIETYIQHAI-PVSKYNS---DALLTDLP  394

Query  527  QAALTKRAAQAAQRENQ  543
            +     R  Q   R N 
Sbjct  395  EPKRRHRPRQGQPRRNN  411


>sp|Q8CSV3|RECG_STAES ATP-dependent DNA helicase RecG OS=Staphylococcus 
epidermidis (strain ATCC 12228 / FDA PCI 1200) OX=176280 
GN=recG PE=3 SV=1
Length=682

 Score = 40.0 bits (92),  Expect = 0.075, Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 10/71 (14%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQAR  469
            M+  D+ +V+QKF    +++LV+T+V E G+++P+   ++     R+GL T    + Q R
Sbjct  514  MSAEDKDQVMQKFSKHEIDILVSTTVVEVGVNVPNATFMMIYDADRFGLST----LHQLR  569

Query  470  GR-ARADQSVY  479
            GR  R++   Y
Sbjct  570  GRVGRSEHQSY  580


>sp|Q3KF38|UVRB_PSEPF UvrABC system protein B OS=Pseudomonas fluorescens 
(strain Pf0-1) OX=205922 GN=uvrB PE=3 SV=1
Length=671

 Score = 40.0 bits (92),  Expect = 0.076, Method: Compositional matrix adjust.
 Identities = 20/56 (36%), Positives = 34/56 (61%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + GT ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  485  EIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  540


>sp|Q4KF19|UVRB_PSEF5 UvrABC system protein B OS=Pseudomonas fluorescens 
(strain ATCC BAA-477 / NRRL B-23932 / Pf-5) OX=220664 
GN=uvrB PE=3 SV=1
Length=671

 Score = 40.0 bits (92),  Expect = 0.077, Method: Compositional matrix adjust.
 Identities = 20/56 (36%), Positives = 34/56 (61%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + GT ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  485  EIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  540


>sp|P25888|RHLE_ECOLI ATP-dependent RNA helicase RhlE OS=Escherichia 
coli (strain K12) OX=83333 GN=rhlE PE=1 SV=3
Length=454

 Score = 39.7 bits (91),  Expect = 0.080, Method: Compositional matrix adjust.
 Identities = 36/139 (26%), Positives = 60/139 (43%), Gaps = 17/139 (12%)

Query  356  KILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHM  415
            ++L       N  + ++FTRT+  A+ L   L +  G+++  I        GN SQ    
Sbjct  234  ELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKD-GIRSAAIH-------GNKSQGA--  283

Query  416  TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT---NEISMVQARGRA  472
                +   +  F+ G + +LVAT +A  GLDI     VV Y L     + +  +   GRA
Sbjct  284  ----RTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRA  339

Query  473  RADQSVYAFVATEGSRELK  491
             A     + V  +  + L+
Sbjct  340  AATGEALSLVCVDEHKLLR  358


>sp|Q6CEB8|DRS1_YARLI ATP-dependent RNA helicase DRS1 OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DRS1 PE=3 
SV=1
Length=753

 Score = 40.0 bits (92),  Expect = 0.082, Method: Compositional matrix adjust.
 Identities = 40/144 (28%), Positives = 61/144 (42%), Gaps = 18/144 (13%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            R IIF   +++AH L + L    GL  + +R   L GA        ++Q  + + I  F+
Sbjct  500  RTIIFVARKETAHRLRIML----GL--LGVRIGELHGA--------LSQEQRLQSITAFK  545

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR----ARADQSVYAFVAT  484
               + +LV T +A  GLDIP    VV Y +       +   GR     R  +S+      
Sbjct  546  KLEVPILVCTDLASRGLDIPKIECVVNYDMPQTHAVYLHRVGRTARAGREGRSITLVGEA  605

Query  485  EGSRELKRELINEALETLMEQAVA  508
               R + RE I    E+   +AV 
Sbjct  606  AADRAIVREAIKSVSESKQGKAVG  629


>sp|Q8ENJ5|UVRB_OCEIH UvrABC system protein B OS=Oceanobacillus 
iheyensis (strain DSM 14371 / CIP 107618 / JCM 11309 / KCTC 
3954 / HTE831) OX=221109 GN=uvrB PE=3 SV=1
Length=660

 Score = 40.0 bits (92),  Expect = 0.083, Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 77/177 (44%), Gaps = 52/177 (29%)

Query  331  FDDRKNELAHLAT--------HGPE------------NPKLE----------MLEKILQR  360
            F+D+  +L +++         H PE            +PK+E          ++E+I  R
Sbjct  382  FEDKTKQLVYVSATPGPYELEHSPEMTEQIIRPTGLLDPKVEVRPIEGQIDNLIEEIRIR  441

Query  361  QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ  420
                  + R +I T T++ +  L  +L++              IG   +   + +   ++
Sbjct  442  M---EKNERVLITTLTKKMSEDLTDYLKE--------------IGMKVAYLHSEIKTLER  484

Query  421  QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
             EVI+  + G  ++LV  ++  EGLDIP  ++V      + G L +E S++Q  GRA
Sbjct  485  IEVIRDLRVGKFDVLVGINLLREGLDIPEVSLVSILDADKEGFLRSERSLIQTMGRA  541


>sp|Q5N7W4|RH30_ORYSJ DEAD-box ATP-dependent RNA helicase 30 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os01g0911100 PE=2 
SV=2
Length=666

 Score = 40.0 bits (92),  Expect = 0.085, Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 12/102 (12%)

Query  417  QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT---NEISMVQARGRAR  473
            Q ++  V+ +F+ G   ++ AT VA  GLD+     V+ +   T   + I  +   GRA 
Sbjct  532  QAERDYVLAEFKSGKSPIMAATDVAARGLDVKDIKCVINFDFPTTLEDYIHRIGRTGRAG  591

Query  474  ADQSVYAFVA---TEGSRELKR------ELINEALETLMEQA  506
            A  + + F      + SR L +      +++N ALE++ + A
Sbjct  592  ASGTAFTFFTLSNAKFSRNLVKILREAGQVVNPALESMAKSA  633


>sp|Q9UHL0|DDX25_HUMAN ATP-dependent RNA helicase DDX25 OS=Homo 
sapiens OX=9606 GN=DDX25 PE=1 SV=2
Length=483

 Score = 39.7 bits (91),  Expect = 0.087, Method: Compositional matrix adjust.
 Identities = 26/97 (27%), Positives = 45/97 (46%), Gaps = 14/97 (14%)

Query  362  FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ  421
            + S    + IIF +TR++A  L + + Q               G   S  S  +T   + 
Sbjct  333  YGSITIGQAIIFCQTRRNAKWLTVEMIQD--------------GHQVSLLSGELTVEQRA  378

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL  458
             +IQ+F+DG   +L+ T+V   G+D+    +VV + L
Sbjct  379  SIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDL  415


>sp|B3EFX1|UVRB_CHLL2 UvrABC system protein B OS=Chlorobium limicola 
(strain DSM 245 / NBRC 103803 / 6330) OX=290315 GN=uvrB 
PE=3 SV=1
Length=684

 Score = 40.0 bits (92),  Expect = 0.087, Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 71/146 (49%), Gaps = 26/146 (18%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRAR  473
            ++ +++++ + G +++LV  ++  EGLD+P  ++V      + G L N  S++Q  GRA 
Sbjct  488  ERMQILRELRTGEIDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNTRSLMQIAGRAA  547

Query  474  ADQS----VYAFVATEGSREL-----KRELINEALETLMEQAVAAVQKMDQAEYQAKIRD  524
             +      +YA V T   RE+     +R  I +A     E  +           Q+ I+ 
Sbjct  548  RNSEGFVVLYADVLTRSIREVLDETSRRRKIQQAYNE--EHGIVP---------QSIIKS  596

Query  525  LQQAALTKRAAQAAQRENQRQQFPVE  550
            ++Q   T   A A +R  +R++F +E
Sbjct  597  VEQVLNTTGVADAEER-YRRKRFGLE  621


>sp|Q64060|DDX4_RAT Probable ATP-dependent RNA helicase DDX4 OS=Rattus 
norvegicus OX=10116 GN=Ddx4 PE=1 SV=1
Length=713

 Score = 40.0 bits (92),  Expect = 0.088, Method: Compositional matrix adjust.
 Identities = 32/130 (25%), Positives = 57/130 (44%), Gaps = 17/130 (13%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            R ++F  T++ A  +  +L Q++ + T  I                  QR++++ +  F+
Sbjct  527  RPMVFVETKKKADFIATFLCQEK-ISTTSIHGD-------------REQREREQALGDFR  572

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGRARADQSVYAFVATE  485
             G   +LVATSVA  GLDI +   V+ + L   +   +  +   GR        +F  TE
Sbjct  573  CGKCPVLVATSVAARGLDIENVQHVINFNLPSTIDEYVHRIGRTGRCGNTGRAISFFDTE  632

Query  486  GSRELKRELI  495
                L + L+
Sbjct  633  SDNHLAQPLV  642


>sp|B8CHZ1|RHLB_SHEPW ATP-dependent RNA helicase RhlB OS=Shewanella 
piezotolerans (strain WP3 / JCM 13877) OX=225849 GN=rhlB 
PE=3 SV=1
Length=437

 Score = 39.7 bits (91),  Expect = 0.091, Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 49/109 (45%), Gaps = 15/109 (14%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            + I+F+ T+ S   +  WL+          R  LL G         + Q+ +  ++++F 
Sbjct  258  KAIVFSNTKHSCEKVWSWLEGDGH------RVGLLTG--------DVPQKKRLRILEQFT  303

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQ  476
             G +++LVAT VA  GL I   + V  Y L  +    V   GR  RA Q
Sbjct  304  SGDIDVLVATDVAARGLHIADVSHVYNYDLPDDCEDYVHRIGRTGRAGQ  352


>sp|Q92841|DDX17_HUMAN Probable ATP-dependent RNA helicase DDX17 
OS=Homo sapiens OX=9606 GN=DDX17 PE=1 SV=2
Length=729

 Score = 39.7 bits (91),  Expect = 0.091, Method: Compositional matrix adjust.
 Identities = 30/98 (31%), Positives = 49/98 (50%), Gaps = 9/98 (9%)

Query  416  TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA  474
            +Q ++  V+ +F+ G   +L+AT VA  GLD+     V+ Y    +    V   GR AR+
Sbjct  453  SQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARS  512

Query  475  DQ--SVYAFVATEGSRELKRELINEALETLMEQAVAAV  510
                + Y F  T G+ +  RELI      ++E+A  A+
Sbjct  513  TNKGTAYTFF-TPGNLKQARELIK-----VLEEANQAI  544


>sp|A3LSJ2|DBP6_PICST ATP-dependent RNA helicase DBP6 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=DBP6 PE=3 SV=2
Length=591

 Score = 39.7 bits (91),  Expect = 0.092, Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 58/122 (48%), Gaps = 8/122 (7%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            +IFT++ +++  L   L+   G     +   + I   NS+ +    +    ++++ F   
Sbjct  429  LIFTKSNEASIRLCKLLELMFG----KLHPSMNIAYINSTNNKSAIR---TKILKDFSTQ  481

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRE  489
             +N+LVAT +   G+DI     V+ Y L  +    V   GR ARA+Q+ +A+    G  E
Sbjct  482  KINILVATDLIARGIDILSITDVINYDLPNSSREYVHRVGRTARANQTGHAYTLCFGKGE  541

Query  490  LK  491
             K
Sbjct  542  AK  543


>sp|Q6CJV1|DRS1_KLULA ATP-dependent RNA helicase DRS1 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 
1267 / NRRL Y-1140 / WM37) OX=284590 GN=DRS1 PE=3 SV=1
Length=748

 Score = 39.7 bits (91),  Expect = 0.092, Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 67/150 (45%), Gaps = 16/150 (11%)

Query  358  LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ  417
            L R+  +++  R ++F   +++AH L + L               L+G         +TQ
Sbjct  472  LIRKLDNTSQKRIVVFVARKETAHKLRIVLG--------------LLGMQVGELHGSLTQ  517

Query  418  RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL-LTNEISMVQARGRARADQ  476
              + + +  F+   + +L+ T +A  GLDIP   VV+ + +  T EI + +    ARA +
Sbjct  518  EQRLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGR  577

Query  477  SVYAFVATEGSRELKRELINEALETLMEQA  506
               + V   G     R ++  A+ ++ E A
Sbjct  578  EGRS-VTFVGESSQDRSIVRSAIRSVEENA  606


>sp|P72174|UVRB_PSEAE UvrABC system protein B OS=Pseudomonas aeruginosa 
(strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 
14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=uvrB PE=3 
SV=2
Length=670

 Score = 39.7 bits (91),  Expect = 0.093, Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 22/126 (17%)

Query  352  EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ  411
            ++L +I QR    +   R ++ T T++ A  L  +L         D+R + L        
Sbjct  432  DLLSQIRQR---VAKDERVLVTTLTKRMAEDLTDYLGDH------DVRVRYL--------  474

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMV  466
             + +   ++ E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++
Sbjct  475  HSDIDTVERVEIIRDLRAGAFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLI  534

Query  467  QARGRA  472
            Q  GRA
Sbjct  535  QTIGRA  540


>sp|Q501J6|DDX17_MOUSE Probable ATP-dependent RNA helicase DDX17 
OS=Mus musculus OX=10090 GN=Ddx17 PE=1 SV=1
Length=650

 Score = 39.7 bits (91),  Expect = 0.093, Method: Compositional matrix adjust.
 Identities = 30/98 (31%), Positives = 49/98 (50%), Gaps = 9/98 (9%)

Query  416  TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA  474
            +Q ++  V+ +F+ G   +L+AT VA  GLD+     V+ Y    +    V   GR AR+
Sbjct  374  SQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARS  433

Query  475  DQ--SVYAFVATEGSRELKRELINEALETLMEQAVAAV  510
                + Y F  T G+ +  RELI      ++E+A  A+
Sbjct  434  TNKGTAYTFF-TPGNLKQARELIK-----VLEEANQAI  465


>sp|Q5N3H1|UVRB_SYNP6 UvrABC system protein B OS=Synechococcus 
sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 
GN=uvrB PE=3 SV=1
Length=666

 Score = 39.7 bits (91),  Expect = 0.093, Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E++Q  ++G  ++L+  ++  EGLD+P  ++V      + G L  E S++Q  GRA
Sbjct  485  EILQDLRNGDFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRTERSLIQTIGRA  540


>sp|Q31QS4|UVRB_SYNE7 UvrABC system protein B OS=Synechococcus 
elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805) OX=1140 
GN=uvrB PE=3 SV=1
Length=666

 Score = 39.7 bits (91),  Expect = 0.093, Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E++Q  ++G  ++L+  ++  EGLD+P  ++V      + G L  E S++Q  GRA
Sbjct  485  EILQDLRNGDFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRTERSLIQTIGRA  540


>sp|Q41382|RH7_SPIOL DEAD-box ATP-dependent RNA helicase 7 OS=Spinacia 
oleracea OX=3562 GN=RH7 PE=2 SV=1
Length=685

 Score = 39.7 bits (91),  Expect = 0.094, Method: Compositional matrix adjust.
 Identities = 38/142 (27%), Positives = 65/142 (46%), Gaps = 25/142 (18%)

Query  318  TQILCAERRLLALFDDRKNELA----HLATHGPENPKLEMLEKILQRQFSSSNSPRGIIF  373
            T+ L + ++ + L  D+K + +    H+      + + +++  I+ R + S    R IIF
Sbjct  311  TRFLKSAKKTVDLVSDQKMKASISVRHIVIPCSASARPDLIPDII-RCYGSGG--RSIIF  367

Query  374  TRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN  433
            T T++SA  L                A LL GA         TQR  +  ++ F+ G   
Sbjct  368  TETKESASQL----------------AGLLTGARPLHGDIQQTQR--EVTLKGFRTGKFM  409

Query  434  LLVATSVAEEGLDIPHCNVVVR  455
             LVAT+VA  GLDI    ++++
Sbjct  410  TLVATNVAARGLDINDVQLIIQ  431


>sp|B6EGH8|UVRB_ALISL UvrABC system protein B OS=Aliivibrio salmonicida 
(strain LFI1238) OX=316275 GN=uvrB PE=3 SV=1
Length=676

 Score = 39.7 bits (91),  Expect = 0.095, Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 18/96 (19%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA----  472
            E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++QA GRA    
Sbjct  488  EIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQAIGRAARNL  547

Query  473  ------RADQSVYAFVATEGSRELKRE---LINEAL  499
                   AD+   +     G  E +RE   L NEAL
Sbjct  548  EGKAILYADRITGSMEKAIGETERRREKQILHNEAL  583


>sp|Q7M806|UVRB_WOLSU UvrABC system protein B OS=Wolinella succinogenes 
(strain ATCC 29543 / DSM 1740 / CCUG 13145 / JCM 31913 
/ LMG 7466 / NCTC 11488 / FDC 602W) OX=273121 GN=uvrB PE=3 
SV=1
Length=658

 Score = 39.7 bits (91),  Expect = 0.095, Method: Compositional matrix adjust.
 Identities = 18/59 (31%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ ++I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  486  ERNQIIRGLRTGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTMGRA  544


>sp|Q031G7|UVRB_LACLS UvrABC system protein B OS=Lactococcus lactis 
subsp. cremoris (strain SK11) OX=272622 GN=uvrB PE=3 SV=1
Length=692

 Score = 39.7 bits (91),  Expect = 0.095, Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 61/123 (50%), Gaps = 13/123 (11%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRAR  473
            ++ E+I+  + G  ++LV  ++  EG+D+P  ++V      + G L NE  ++Q  GRA 
Sbjct  489  ERTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAA  548

Query  474  ADQSVYAFVATEGSREL------KRELINEALETLME-QAVAAVQKMDQA-EYQAKIRDL  525
             +   +  + ++ ++ L       +E+++    T  E Q     + M  A +  A+ RD+
Sbjct  549  RNSEGHVILYSDMAKALDENDPADKEILDSGYYTEYEGQKYKITRSMKHAMDETARRRDI  608

Query  526  QQA  528
            Q A
Sbjct  609  QMA  611


>sp|Q10MH8|RH24_ORYSJ DEAD-box ATP-dependent RNA helicase 24 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os03g0308500 PE=2 
SV=1
Length=770

 Score = 39.7 bits (91),  Expect = 0.096, Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 12/81 (15%)

Query  407  GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM-  465
            G+  Q++ M      E +QKF+ G  ++LVAT VA  GLDI     VV +  +  E+ M 
Sbjct  496  GDKDQASRM------ETLQKFKSGVYHVLVATDVAARGLDIKSIKTVVNFD-IAKEMDMH  548

Query  466  ---VQARGRA-RADQSVYAFV  482
               +   GRA   D + Y  +
Sbjct  549  IHRIGRTGRAGDKDGTAYTLI  569


>sp|Q75C39|DBP5_EREGS ATP-dependent RNA helicase DBP5 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=DBP5 PE=3 SV=2
Length=466

 Score = 39.7 bits (91),  Expect = 0.096, Method: Compositional matrix adjust.
 Identities = 28/88 (32%), Positives = 46/88 (52%), Gaps = 14/88 (16%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            IIF +T+Q+A+ L   L+++ G Q   +   L        QS      D+  +I  F++G
Sbjct  319  IIFVQTKQTANMLYTELKRE-GHQVSILHGDL--------QSA-----DRDRLIGDFREG  364

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGL  458
               +L+ T+V   G+DIP  ++VV Y L
Sbjct  365  RSKVLITTNVLARGIDIPTVSMVVNYDL  392


>sp|Q49VV6|UVRB_STAS1 UvrABC system protein B OS=Staphylococcus 
saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 
20229 / NCIMB 8711 / NCTC 7292 / S-41) OX=342451 GN=uvrB PE=3 
SV=1
Length=660

 Score = 39.7 bits (91),  Expect = 0.098, Method: Compositional matrix adjust.
 Identities = 20/56 (36%), Positives = 35/56 (63%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + GT +++V  ++  EG+DIP  ++VV     + G L ++ S+VQ  GRA
Sbjct  487  EIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSQRSLVQTIGRA  542


>sp|B9MS82|UVRB_CALBD UvrABC system protein B OS=Caldicellulosiruptor 
bescii (strain ATCC BAA-1888 / DSM 6725 / KCTC 15123 
/ Z-1320) OX=521460 GN=uvrB PE=3 SV=1
Length=661

 Score = 39.7 bits (91),  Expect = 0.10, Method: Compositional matrix adjust.
 Identities = 28/109 (26%), Positives = 55/109 (50%), Gaps = 19/109 (17%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            R ++ T T++ A SL  +L+       V IR + +         + +   ++ ++I+  +
Sbjct  446  RVLVTTLTKKMAESLTEYLKD------VGIRVRYM--------HSDIDTIERMQIIRDLR  491

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
             G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  492  LGKFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRA  540


>sp|A5E058|PRP5_LODEL Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Lodderomyces elongisporus (strain ATCC 11503 
/ CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) OX=379508 
GN=PRP5 PE=3 SV=1
Length=994

 Score = 39.7 bits (91),  Expect = 0.11, Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 68/149 (46%), Gaps = 20/149 (13%)

Query  348  NPKLEMLEKILQRQFS-SSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA  406
            N K++ LE IL R F    N+ + ++F   +  A  L+  L ++       I    + G 
Sbjct  624  NHKIQKLEDILSRFFDLGKNTGKVLVFVEKQTDADKLVSVLLKKA------IPCIAIHGG  677

Query  407  GNSSQSTHMTQRDQQEVIQKFQD--GTLNLLVATSVAEEGLDIPHCNVVVRY---GLLTN  461
             +        Q D++  I++F D    +N+L+ATS+A  GLD+ + ++VV +     L +
Sbjct  678  KD--------QIDRKHAIREFSDDQSGINVLIATSIAARGLDVRNLDLVVNFEPPSHLED  729

Query  462  EISMVQARGRARADQSVYAFVATEGSREL  490
             +  V   GRA        FV     +E+
Sbjct  730  YVHRVGRTGRAGKHGEAITFVDNTQEKEI  758


>sp|A4W1F7|UVRB_STRS2 UvrABC system protein B OS=Streptococcus 
suis (strain 98HAH33) OX=391296 GN=uvrB PE=3 SV=1
Length=661

 Score = 39.7 bits (91),  Expect = 0.11, Method: Compositional matrix adjust.
 Identities = 31/134 (23%), Positives = 59/134 (44%), Gaps = 23/134 (17%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            R  I T T++ A  L  +L++              +G       + +   ++ E+I+  +
Sbjct  452  RTFITTLTKKMAEDLTDYLKE--------------MGVKVKYMHSDIKTLERTEIIRDLR  497

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRARADQS----VY  479
             G  ++L+  ++  EG+D+P  ++V      + G L NE  ++Q  GRA  +      +Y
Sbjct  498  LGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSEGHVIMY  557

Query  480  AFVATEGSRELKRE  493
            A   TE  R+   E
Sbjct  558  ADKVTESMRKAMEE  571


>sp|Q6MEV1|UVRB_PARUW UvrABC system protein B OS=Protochlamydia 
amoebophila (strain UWE25) OX=264201 GN=uvrB PE=3 SV=1
Length=673

 Score = 39.7 bits (91),  Expect = 0.11, Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 6/79 (8%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGR-ARAD  475
            ++I+  + G  ++LV  ++  EGLDIP  ++V      + G L +E S++Q  GR AR  
Sbjct  489  QIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSETSLIQTCGRAARNA  548

Query  476  QSVYAFVATEGSRELKREL  494
            +      A + ++ +KR L
Sbjct  549  EGRVIMYADKITKSIKRTL  567


>sp|Q7ZVA6|IF4A3_DANRE Eukaryotic initiation factor 4A-III OS=Danio 
rerio OX=7955 GN=eif4a3 PE=2 SV=1
Length=406

 Score = 39.3 bits (90),  Expect = 0.11, Method: Compositional matrix adjust.
 Identities = 17/64 (27%), Positives = 36/64 (56%), Gaps = 0/64 (0%)

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
            SS    M Q++++ ++++F+ G   +L++T V   GLD+   ++++ Y L  N    +  
Sbjct  300  SSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVSQVSLIINYDLPNNRELYIHR  359

Query  469  RGRA  472
             GR+
Sbjct  360  IGRS  363


>sp|Q9Y7T7|PRP28_SCHPO Pre-mRNA-splicing ATP-dependent RNA helicase 
prp28 OS=Schizosaccharomyces pombe (strain 972 / ATCC 
24843) OX=284812 GN=prp28 PE=3 SV=1
Length=662

 Score = 39.7 bits (91),  Expect = 0.11, Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 41/75 (55%), Gaps = 3/75 (4%)

Query  416  TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGRA  472
            +Q  ++  I++ ++ T ++LVAT +A  G+DIP+ ++V+ Y +   + +    +   GRA
Sbjct  551  SQEQRERAIEQLRNKTADILVATDIAGRGIDIPNVSLVLNYNMAKSIEDYTHRIGRTGRA  610

Query  473  RADQSVYAFVATEGS  487
                +   F+  E +
Sbjct  611  GKSGTAITFLGPEDT  625


>sp|Q5WDG7|UVRB_SHOC1 UvrABC system protein B OS=Shouchella clausii 
(strain KSM-K16) OX=66692 GN=uvrB PE=3 SV=1
Length=660

 Score = 39.7 bits (91),  Expect = 0.11, Method: Compositional matrix adjust.
 Identities = 19/56 (34%), Positives = 34/56 (61%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I++ + GT ++L+  ++  EG+DIP  ++V      + G L  E S++Q  GRA
Sbjct  486  EIIRQLRLGTFDVLIGINLLREGIDIPEVSLVAILDADKEGFLRAERSLIQTIGRA  541


>sp|A4REU9|MAK5_PYRO7 ATP-dependent RNA helicase MAK5 OS=Pyricularia 
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 
GN=MAK5 PE=3 SV=2
Length=760

 Score = 39.7 bits (91),  Expect = 0.11, Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 54/113 (48%), Gaps = 18/113 (16%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF-  427
            R ++FT +  S   L   LQQ   L  + + +Q             M Q+ +   +++F 
Sbjct  479  RTLVFTNSISSVRRLTPMLQQLT-LPVIALHSQ-------------MIQKARLRSVERFT  524

Query  428  --QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQS  477
              + G+ ++L+AT VA  GLDI   +VV+ Y +     + V   GR ARAD S
Sbjct  525  SSKPGSASILIATDVAARGLDIRGIDVVIHYHVPRTADAYVHRSGRTARADSS  577


>sp|Q0UAT0|FAL1_PHANO ATP-dependent RNA helicase FAL1 OS=Phaeosphaeria 
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) 
OX=321614 GN=FAL1 PE=3 SV=3
Length=374

 Score = 39.3 bits (90),  Expect = 0.11, Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 35/64 (55%), Gaps = 0/64 (0%)

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
            SS    M QR++  ++Q F+     +L++T V   G+D+   ++V+ Y L +N  + +  
Sbjct  267  SSMHGDMPQRERDSIMQDFRQANSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHR  326

Query  469  RGRA  472
             GR+
Sbjct  327  IGRS  330


>sp|Q5ADL0|PRP5_CANAL Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) 
OX=237561 GN=PRP5 PE=3 SV=1
Length=884

 Score = 39.7 bits (91),  Expect = 0.12, Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 44/79 (56%), Gaps = 5/79 (6%)

Query  417  QRDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGR  471
            Q D++  I++F   D  +N+L+ATS+A  GLD+ +  +V+ +     + + +  V   GR
Sbjct  590  QMDRKYAIKEFASMDSGINILIATSIAARGLDVRNLGLVINFDPPNHMEDYVHRVGRTGR  649

Query  472  ARADQSVYAFVATEGSREL  490
            A A  +   FV++   +E+
Sbjct  650  AGAKGNAITFVSSSQPKEV  668


>sp|P32639|BRR2_YEAST Pre-mRNA-splicing helicase BRR2 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=BRR2 
PE=1 SV=2
Length=2163

 Score = 39.7 bits (91),  Expect = 0.12, Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 77/186 (41%), Gaps = 30/186 (16%)

Query  3    LRSYQWEVIMPALEG-KNIIIWLPTGAGKTRAAA----------YVAKRHLETVDGAKVV  51
            L   Q +V   A EG  N++I  PTG+GKT  A           Y  K     +   K+V
Sbjct  499  LNPIQSKVFHAAFEGDSNMLICAPTGSGKTNIALLTVLKALSHHYNPKTKKLNLSAFKIV  558

Query  52   VLVNRVHLVTQHGEEF-RRMLDGRWTVTTLSGDMGPRAGFGHLARCH----DLLICTAEL  106
             +     LV +   EF RR+      V  L+GD         L+R       +L+ T E 
Sbjct  559  YIAPLKALVQEQVREFQRRLAFLGIKVAELTGD-------SRLSRKQIDETQVLVSTPEK  611

Query  107  LQMALTSPEEEEHVELTVFSLIVVDECHHTHKD---TVYNVIMSQYLELKLQRAQPLPQV  163
              +   +      VEL    L+++DE H  H D    + +++   +   K    Q  P++
Sbjct  612  WDITTRNSNNLAIVELV--RLLIIDEIHLLHDDRGPVLESIVARTFWASKY--GQEYPRI  667

Query  164  LGLTAS  169
            +GL+A+
Sbjct  668  IGLSAT  673


>sp|Q8PRZ9|UVRB_METMA UvrABC system protein B OS=Methanosarcina 
mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 
/ OCM 88) OX=192952 GN=uvrB PE=3 SV=1
Length=670

 Score = 39.3 bits (90),  Expect = 0.12, Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 63/132 (48%), Gaps = 25/132 (19%)

Query  351  LEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSS  410
            ++ + KI++R        R ++ T T++ A  L  +L + +      I+A+ L       
Sbjct  455  MQEIRKIVER------GDRALVTTLTKKLAEELTEFLAKNE------IKARYL-------  495

Query  411  QSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV-----VRYGLLTNEISM  465
              + +   ++ E+I++ + G  ++LV  ++  EGLDIP    +      + G L N  S+
Sbjct  496  -HSDIKTIERTEIIRELRLGKFDVLVGINLLREGLDIPEVGFIGILDADKEGFLRNSKSL  554

Query  466  VQARGRARADQS  477
            +Q  GRA  + S
Sbjct  555  IQIIGRAARNSS  566


>sp|B8HQA9|UVRB_CYAP4 UvrABC system protein B OS=Cyanothece sp. 
(strain PCC 7425 / ATCC 29141) OX=395961 GN=uvrB PE=3 SV=1
Length=665

 Score = 39.3 bits (90),  Expect = 0.12, Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+++  + GT ++L+  ++  EGLD+P  ++V      + G L  E S++Q  GRA
Sbjct  485  EILEDLRKGTFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRA  540


>sp|C1CKX8|UVRB_STRZP UvrABC system protein B OS=Streptococcus 
pneumoniae (strain P1031) OX=488223 GN=uvrB PE=3 SV=1
Length=662

 Score = 39.3 bits (90),  Expect = 0.12, Method: Compositional matrix adjust.
 Identities = 39/178 (22%), Positives = 76/178 (43%), Gaps = 10/178 (6%)

Query  370  GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD  429
            G I  R  ++  + +  L ++      D   ++ I            +R   E+I+  + 
Sbjct  441  GEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLER--TEIIRDLRL  498

Query  430  GTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGR-ARADQSVYAFVA  483
            G  ++LV  ++  EG+D+P  ++V      + G L NE  ++Q  GR AR  +      A
Sbjct  499  GVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSEGHVIMYA  558

Query  484  TEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRE  541
               ++ ++R +   A    ++ A      +     + +IRDL   A+TK  A+   +E
Sbjct  559  DTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDL--IAVTKAVAKEEDKE  614


>sp|Q8DPK7|UVRB_STRR6 UvrABC system protein B OS=Streptococcus 
pneumoniae (strain ATCC BAA-255 / R6) OX=171101 GN=uvrB PE=3 
SV=1
Length=662

 Score = 39.3 bits (90),  Expect = 0.12, Method: Compositional matrix adjust.
 Identities = 32/129 (25%), Positives = 62/129 (48%), Gaps = 8/129 (6%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGR-A  472
            ++ E+I+  + G  ++LV  ++  EG+D+P  ++V      + G L NE  ++Q  GR A
Sbjct  488  ERTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAA  547

Query  473  RADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTK  532
            R  +      A   ++ ++R +   A    ++ A      +     + +IRDL   A+TK
Sbjct  548  RNSEGHVIMYADTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDL--IAVTK  605

Query  533  RAAQAAQRE  541
              A+   +E
Sbjct  606  AVAKEEDKE  614


>sp|Q04K81|UVRB_STRP2 UvrABC system protein B OS=Streptococcus 
pneumoniae serotype 2 (strain D39 / NCTC 7466) OX=373153 GN=uvrB 
PE=3 SV=1
Length=662

 Score = 39.3 bits (90),  Expect = 0.12, Method: Compositional matrix adjust.
 Identities = 32/129 (25%), Positives = 62/129 (48%), Gaps = 8/129 (6%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGR-A  472
            ++ E+I+  + G  ++LV  ++  EG+D+P  ++V      + G L NE  ++Q  GR A
Sbjct  488  ERTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAA  547

Query  473  RADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTK  532
            R  +      A   ++ ++R +   A    ++ A      +     + +IRDL   A+TK
Sbjct  548  RNSEGHVIMYADTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDL--IAVTK  605

Query  533  RAAQAAQRE  541
              A+   +E
Sbjct  606  AVAKEEDKE  614


>sp|Q7VXH4|UVRB_BORPE UvrABC system protein B OS=Bordetella pertussis 
(strain Tohama I / ATCC BAA-589 / NCTC 13251) OX=257313 
GN=uvrB PE=3 SV=1
Length=678

 Score = 39.3 bits (90),  Expect = 0.12, Method: Compositional matrix adjust.
 Identities = 20/56 (36%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + G  ++LV  ++  EGLDIP  ++V      + G L +E S++Q  GRA
Sbjct  495  EIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA  550


>sp|C1C7L7|UVRB_STRP7 UvrABC system protein B OS=Streptococcus 
pneumoniae (strain 70585) OX=488221 GN=uvrB PE=3 SV=1
Length=662

 Score = 39.3 bits (90),  Expect = 0.12, Method: Compositional matrix adjust.
 Identities = 39/178 (22%), Positives = 76/178 (43%), Gaps = 10/178 (6%)

Query  370  GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD  429
            G I  R  ++  + +  L ++      D   ++ I            +R   E+I+  + 
Sbjct  441  GEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLER--TEIIRDLRL  498

Query  430  GTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGR-ARADQSVYAFVA  483
            G  ++LV  ++  EG+D+P  ++V      + G L NE  ++Q  GR AR  +      A
Sbjct  499  GVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSEGHVIMYA  558

Query  484  TEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRE  541
               ++ ++R +   A    ++ A      +     + +IRDL   A+TK  A+   +E
Sbjct  559  DTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDL--IAVTKAVAKEEDKE  614


>sp|B5E4X3|UVRB_STRP4 UvrABC system protein B OS=Streptococcus 
pneumoniae serotype 19F (strain G54) OX=512566 GN=uvrB PE=3 
SV=1
Length=662

 Score = 39.3 bits (90),  Expect = 0.12, Method: Compositional matrix adjust.
 Identities = 39/178 (22%), Positives = 76/178 (43%), Gaps = 10/178 (6%)

Query  370  GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD  429
            G I  R  ++  + +  L ++      D   ++ I            +R   E+I+  + 
Sbjct  441  GEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLER--TEIIRDLRL  498

Query  430  GTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGR-ARADQSVYAFVA  483
            G  ++LV  ++  EG+D+P  ++V      + G L NE  ++Q  GR AR  +      A
Sbjct  499  GVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSEGHVIMYA  558

Query  484  TEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRE  541
               ++ ++R +   A    ++ A      +     + +IRDL   A+TK  A+   +E
Sbjct  559  DTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDL--IAVTKAVAKEEDKE  614


>sp|Q2L244|UVRB_BORA1 UvrABC system protein B OS=Bordetella avium 
(strain 197N) OX=360910 GN=uvrB PE=3 SV=1
Length=676

 Score = 39.3 bits (90),  Expect = 0.12, Method: Compositional matrix adjust.
 Identities = 20/56 (36%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + G  ++LV  ++  EGLDIP  ++V      + G L +E S++Q  GRA
Sbjct  495  EIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA  550


>sp|C1CEJ5|UVRB_STRZJ UvrABC system protein B OS=Streptococcus 
pneumoniae (strain JJA) OX=488222 GN=uvrB PE=3 SV=1
Length=662

 Score = 39.3 bits (90),  Expect = 0.12, Method: Compositional matrix adjust.
 Identities = 39/178 (22%), Positives = 76/178 (43%), Gaps = 10/178 (6%)

Query  370  GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD  429
            G I  R  ++  + +  L ++      D   ++ I            +R   E+I+  + 
Sbjct  441  GEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLER--TEIIRDLRL  498

Query  430  GTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGR-ARADQSVYAFVA  483
            G  ++LV  ++  EG+D+P  ++V      + G L NE  ++Q  GR AR  +      A
Sbjct  499  GVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSEGHVIMYA  558

Query  484  TEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRE  541
               ++ ++R +   A    ++ A      +     + +IRDL   A+TK  A+   +E
Sbjct  559  DTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDL--IAVTKAVAKEEDKE  614


>sp|B2IPP4|UVRB_STRPS UvrABC system protein B OS=Streptococcus 
pneumoniae (strain CGSP14) OX=516950 GN=uvrB PE=3 SV=1
Length=662

 Score = 39.3 bits (90),  Expect = 0.12, Method: Compositional matrix adjust.
 Identities = 39/178 (22%), Positives = 76/178 (43%), Gaps = 10/178 (6%)

Query  370  GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD  429
            G I  R  ++  + +  L ++      D   ++ I            +R   E+I+  + 
Sbjct  441  GEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLER--TEIIRDLRL  498

Query  430  GTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGR-ARADQSVYAFVA  483
            G  ++LV  ++  EG+D+P  ++V      + G L NE  ++Q  GR AR  +      A
Sbjct  499  GVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSEGHVIMYA  558

Query  484  TEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRE  541
               ++ ++R +   A    ++ A      +     + +IRDL   A+TK  A+   +E
Sbjct  559  DTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDL--IAVTKAVAKEEDKE  614


>sp|Q54986|UVRB_STRPN UvrABC system protein B OS=Streptococcus 
pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) OX=170187 
GN=uvrB PE=3 SV=2
Length=662

 Score = 39.3 bits (90),  Expect = 0.12, Method: Compositional matrix adjust.
 Identities = 39/178 (22%), Positives = 76/178 (43%), Gaps = 10/178 (6%)

Query  370  GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD  429
            G I  R  ++  + +  L ++      D   ++ I            +R   E+I+  + 
Sbjct  441  GEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLER--TEIIRDLRL  498

Query  430  GTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGR-ARADQSVYAFVA  483
            G  ++LV  ++  EG+D+P  ++V      + G L NE  ++Q  GR AR  +      A
Sbjct  499  GVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSEGHVIMYA  558

Query  484  TEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRE  541
               ++ ++R +   A    ++ A      +     + +IRDL   A+TK  A+   +E
Sbjct  559  DTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDL--IAVTKAVAKEEDKE  614


>sp|B8ZJQ9|UVRB_STRPJ UvrABC system protein B OS=Streptococcus 
pneumoniae (strain ATCC 700669 / Spain 23F-1) OX=561276 GN=uvrB 
PE=3 SV=1
Length=662

 Score = 39.3 bits (90),  Expect = 0.12, Method: Compositional matrix adjust.
 Identities = 39/178 (22%), Positives = 76/178 (43%), Gaps = 10/178 (6%)

Query  370  GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD  429
            G I  R  ++  + +  L ++      D   ++ I            +R   E+I+  + 
Sbjct  441  GEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLER--TEIIRDLRL  498

Query  430  GTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGR-ARADQSVYAFVA  483
            G  ++LV  ++  EG+D+P  ++V      + G L NE  ++Q  GR AR  +      A
Sbjct  499  GVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSEGHVIMYA  558

Query  484  TEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRE  541
               ++ ++R +   A    ++ A      +     + +IRDL   A+TK  A+   +E
Sbjct  559  DTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDL--IAVTKAVAKEEDKE  614


>sp|Q2UH00|PRP28_ASPOR Pre-mRNA-splicing ATP-dependent RNA helicase 
prp28 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) 
OX=510516 GN=prp28 PE=3 SV=1
Length=803

 Score = 39.3 bits (90),  Expect = 0.13, Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 56/107 (52%), Gaps = 8/107 (7%)

Query  407  GNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
            G SS + H   TQ  ++  +   ++G  ++LVAT +A  G+D+P  ++V+ + + T   S
Sbjct  666  GFSSVTLHGSKTQEQREAALASVRNGQTDVLVATDLAGRGIDVPDVSLVINFNMATTIES  725

Query  465  MVQARGR-ARADQSVYA--FVATEGSR---ELKRELINEALETLMEQ  505
                 GR  RA +S  A  F+  E +    +LK+ ++  ++  L E+
Sbjct  726  YTHRIGRTGRAGKSGVAITFLGNEDTDVMYDLKQMIMKSSISRLPEE  772


>sp|Q7WK66|UVRB_BORBR UvrABC system protein B OS=Bordetella bronchiseptica 
(strain ATCC BAA-588 / NCTC 13252 / RB50) OX=257310 
GN=uvrB PE=3 SV=1
Length=675

 Score = 39.3 bits (90),  Expect = 0.13, Method: Compositional matrix adjust.
 Identities = 20/56 (36%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + G  ++LV  ++  EGLDIP  ++V      + G L +E S++Q  GRA
Sbjct  495  EIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA  550


>sp|B1IC35|UVRB_STRPI UvrABC system protein B OS=Streptococcus 
pneumoniae (strain Hungary19A-6) OX=487214 GN=uvrB PE=3 SV=1
Length=662

 Score = 39.3 bits (90),  Expect = 0.13, Method: Compositional matrix adjust.
 Identities = 32/129 (25%), Positives = 62/129 (48%), Gaps = 8/129 (6%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGR-A  472
            ++ E+I+  + G  ++LV  ++  EG+D+P  ++V      + G L NE  ++Q  GR A
Sbjct  488  ERTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAA  547

Query  473  RADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTK  532
            R  +      A   ++ ++R +   A    ++ A      +     + +IRDL   A+TK
Sbjct  548  RNSEGHVIMYADTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDL--IAVTK  605

Query  533  RAAQAAQRE  541
              A+   +E
Sbjct  606  AVAKEEDKE  614


>sp|A1STV6|UVRB_PSYIN UvrABC system protein B OS=Psychromonas 
ingrahamii (strain DSM 17664 / CCUG 51855 / 37) OX=357804 GN=uvrB 
PE=3 SV=1
Length=670

 Score = 39.3 bits (90),  Expect = 0.13, Method: Compositional matrix adjust.
 Identities = 19/56 (34%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + G  ++L+  ++  EGLDIP  ++V      + G L +E S++Q  GRA
Sbjct  487  EIIRDLRLGIFDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTMGRA  542


>sp|Q6BLU9|PRP28_DEBHA Pre-mRNA-splicing ATP-dependent RNA helicase 
PRP28 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 
767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 
GN=PRP28 PE=3 SV=2
Length=580

 Score = 39.3 bits (90),  Expect = 0.13, Method: Compositional matrix adjust.
 Identities = 18/57 (32%), Positives = 31/57 (54%), Gaps = 0/57 (0%)

Query  416  TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA  472
            +Q  ++  I  F++G   +L+AT VA  G+DIP+ ++VV Y +       +   GR 
Sbjct  472  SQEARERAIDSFREGKDKILIATDVAARGIDIPNVSLVVNYQMTKKFDEYIHRIGRT  528


>sp|A1CHL3|PRP28_ASPCL Pre-mRNA-splicing ATP-dependent RNA helicase 
prp28 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 
513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 
GN=prp28 PE=3 SV=1
Length=798

 Score = 39.3 bits (90),  Expect = 0.13, Method: Compositional matrix adjust.
 Identities = 32/107 (30%), Positives = 60/107 (56%), Gaps = 8/107 (7%)

Query  407  GNSSQSTHMTQ-RDQQEV-IQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
            G SS + H ++ +DQ+E  +   ++G+ ++LVAT +A  G+D+P  ++VV + + T+  S
Sbjct  660  GFSSVTLHGSKTQDQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMATSIES  719

Query  465  MVQARGR-ARADQSVYA--FVATEGSR---ELKRELINEALETLMEQ  505
                 GR  RA +S  A  F+  E +    +LK+ L+   +  + E+
Sbjct  720  YTHRIGRTGRAGKSGVAITFLGNEDADVMYDLKQMLMKSPISRVPEE  766


>sp|Q6LT47|UVRB_PHOPR UvrABC system protein B OS=Photobacterium 
profundum (strain SS9) OX=298386 GN=uvrB PE=3 SV=1
Length=674

 Score = 39.3 bits (90),  Expect = 0.13, Method: Compositional matrix adjust.
 Identities = 20/56 (36%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + G  ++LV  ++  EGLDIP  ++V      + G L +E S++Q  GRA
Sbjct  488  EIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA  543


>sp|Q4WXW1|DBP8_ASPFU ATP-dependent RNA helicase dbp8 OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 
/ Af293) OX=330879 GN=dbp8 PE=3 SV=1
Length=526

 Score = 39.3 bits (90),  Expect = 0.13, Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 3/86 (3%)

Query  394  QTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN  451
            +T D+  ++L    +   S H  + Q ++   + +F+     +LVAT VA  GLDIP  +
Sbjct  362  KTADLLERMLRRLSHRVTSLHSLLPQSERNANLARFRASAARILVATDVASRGLDIPTVS  421

Query  452  VVVRYGLLTNEISMVQARGR-ARADQ  476
            +V+ Y +  N    V   GR ARA +
Sbjct  422  LVINYDVPRNPDDYVHRVGRTARAGR  447


>sp|B8H7K6|UVRB_PSECP UvrABC system protein B OS=Pseudarthrobacter 
chlorophenolicus (strain ATCC 700700 / DSM 12829 / CIP 
107037 / JCM 12360 / KCTC 9906 / NCIMB 13794 / A6) OX=452863 
GN=uvrB PE=3 SV=1
Length=704

 Score = 39.3 bits (90),  Expect = 0.13, Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 11/110 (10%)

Query  370  GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKF  427
            G I TRT ++   L+  L ++      D     L+G G   +  H  +    + E++++ 
Sbjct  444  GEIRTRTERNERVLVTTLTKRMAEDLTD----YLLGHGVKVEYLHSDVDTLRRVELLREL  499

Query  428  QDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            + GT ++LV  ++  EGLD+P  ++V      + G L +  S++Q  GRA
Sbjct  500  RMGTFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSSTSLIQTIGRA  549


>sp|Q89AK2|MFD_BUCBP Transcription-repair-coupling factor OS=Buchnera 
aphidicola subsp. Baizongia pistaciae (strain Bp) OX=224915 
GN=mfd PE=3 SV=1
Length=697

 Score = 39.3 bits (90),  Expect = 0.13, Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 16/100 (16%)

Query  400  AQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----  454
            A + IG G       +   D + ++  F     N+LV +++ E G+DIP+ N ++     
Sbjct  389  ANIRIGHG------QLRSTDLESIMNDFYHKRFNVLVCSTIIETGIDIPNVNTIIIENAN  442

Query  455  RYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRE  493
             +GL      + Q RGR  R+    YA++     +++K +
Sbjct  443  NFGLA----QLHQLRGRVGRSQHQAYAWLLVPSLKDIKSD  478


>sp|Q6CT46|DBP3_KLULA ATP-dependent RNA helicase DBP3 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 
1267 / NRRL Y-1140 / WM37) OX=284590 GN=DBP3 PE=3 SV=1
Length=504

 Score = 39.3 bits (90),  Expect = 0.13, Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 2/84 (2%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR  473
            ++Q+ + + + +F+ G  NLL+AT VA  GLDIP+   V+           V   GR  R
Sbjct  374  LSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGR  433

Query  474  ADQSVYAF-VATEGSRELKRELIN  496
            A Q   A  + TE  + L   L+N
Sbjct  434  AGQYGTAHTLFTEQEKHLAGALVN  457


>sp|O05955|MFD_RICPR Transcription-repair-coupling factor OS=Rickettsia 
prowazekii (strain Madrid E) OX=272947 GN=mfd PE=3 
SV=2
Length=1120

 Score = 39.3 bits (90),  Expect = 0.13, Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 42/78 (54%), Gaps = 2/78 (3%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS-MVQARGR-A  472
            MT     EV+ +F  G  ++L++T++ E G+DI   N ++ +   T  +S + Q RGR  
Sbjct  825  MTPSKIDEVMSEFYVGKFDILISTTIIESGIDIAEANTMIIHKADTLGLSQLYQLRGRIG  884

Query  473  RADQSVYAFVATEGSREL  490
            R     YA++    ++++
Sbjct  885  RGKIRGYAYLTVASNKKI  902


>sp|A5AA68|DBP8_ASPNC ATP-dependent RNA helicase dbp8 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=dbp8 PE=3 SV=1
Length=522

 Score = 39.3 bits (90),  Expect = 0.14, Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 3/84 (4%)

Query  394  QTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN  451
            +T D+  ++L    +   S H  + Q ++   + +F+     LLVAT VA  GLDIP   
Sbjct  358  KTADLLERMLRRLSHRVTSLHSLLPQSERNANLARFRASAARLLVATDVASRGLDIPSVE  417

Query  452  VVVRYGLLTNEISMVQARGR-ARA  474
            +VV + +  N    V   GR ARA
Sbjct  418  LVVNFDVPRNPDDYVHRVGRTARA  441


>sp|Q6C347|FAL1_YARLI ATP-dependent RNA helicase FAL1 OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=FAL1 PE=3 
SV=1
Length=397

 Score = 38.9 bits (89),  Expect = 0.14, Method: Compositional matrix adjust.
 Identities = 24/104 (23%), Positives = 46/104 (44%), Gaps = 14/104 (13%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            + +IF  T++       WL QQ       +           S    M Q+D+  ++ +F+
Sbjct  265  QAVIFCNTKKKVD----WLTQQMKDNNFTV----------CSMHGDMAQKDRDSIMNEFR  310

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA  472
             G   +L++T V   G+D+   ++V+ Y L  N  + +   GR+
Sbjct  311  SGRSRVLISTDVWARGIDVQQVSLVINYDLPPNRENYIHRIGRS  354


>sp|P45125|UVRB_HAEIN UvrABC system protein B OS=Haemophilus influenzae 
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 
GN=uvrB PE=3 SV=1
Length=679

 Score = 39.3 bits (90),  Expect = 0.14, Method: Compositional matrix adjust.
 Identities = 20/56 (36%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + G  ++LV  ++  EGLDIP  ++V      + G L +E S++Q  GRA
Sbjct  492  EIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA  547


>sp|Q605S7|UVRB_METCA UvrABC system protein B OS=Methylococcus 
capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) OX=243233 
GN=uvrB PE=3 SV=1
Length=664

 Score = 39.3 bits (90),  Expect = 0.14, Method: Compositional matrix adjust.
 Identities = 19/56 (34%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + G  ++LV  ++  EGLDIP  ++V      + G L + +S++Q  GRA
Sbjct  481  EIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSAVSLIQTIGRA  536


>sp|Q8W4E1|RH47_ARATH DEAD-box ATP-dependent RNA helicase 47, 
mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RH47 PE=1 SV=2
Length=551

 Score = 39.3 bits (90),  Expect = 0.14, Method: Compositional matrix adjust.
 Identities = 24/94 (26%), Positives = 48/94 (51%), Gaps = 5/94 (5%)

Query  380  AHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVA  437
            A S++ ++   + L+ V  +   L   G +S   H  + +  +  V++KF++G + +LV 
Sbjct  407  AQSVIAFMNHSRQLKDVVYK---LEARGMNSAEMHGDLGKLGRSTVLKKFKNGEIKVLVT  463

Query  438  TSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
              ++  GLD+  C++VV   L T+ +      GR
Sbjct  464  NELSARGLDVAECDLVVNLELPTDAVHYAHRAGR  497


>sp|Q0CNX1|DBP8_ASPTN ATP-dependent RNA helicase dbp8 OS=Aspergillus 
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=dbp8 
PE=3 SV=1
Length=527

 Score = 39.3 bits (90),  Expect = 0.14, Method: Compositional matrix adjust.
 Identities = 23/61 (38%), Positives = 32/61 (52%), Gaps = 1/61 (2%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR  473
            + Q ++   + +F+     +LVAT VA  GLDIP   +VV Y +  N    V   GR AR
Sbjct  386  LPQSERSSNLARFRASAARILVATDVASRGLDIPSVALVVNYDVPRNPDDYVHRVGRTAR  445

Query  474  A  474
            A
Sbjct  446  A  446


>sp|P57844|UVRB_PASMU UvrABC system protein B OS=Pasteurella multocida 
(strain Pm70) OX=272843 GN=uvrB PE=3 SV=1
Length=678

 Score = 39.3 bits (90),  Expect = 0.14, Method: Compositional matrix adjust.
 Identities = 20/56 (36%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + G  ++LV  ++  EGLDIP  ++V      + G L +E S++Q  GRA
Sbjct  492  EIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA  547


>sp|Q4QJX4|UVRB_HAEI8 UvrABC system protein B OS=Haemophilus influenzae 
(strain 86-028NP) OX=281310 GN=uvrB PE=3 SV=1
Length=679

 Score = 39.3 bits (90),  Expect = 0.14, Method: Compositional matrix adjust.
 Identities = 20/56 (36%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + G  ++LV  ++  EGLDIP  ++V      + G L +E S++Q  GRA
Sbjct  492  EIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA  547


>sp|A1D1R8|DRS1_NEOFI ATP-dependent RNA helicase drs1 OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / 
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=drs1 
PE=3 SV=1
Length=819

 Score = 39.3 bits (90),  Expect = 0.14, Method: Compositional matrix adjust.
 Identities = 49/182 (27%), Positives = 86/182 (47%), Gaps = 30/182 (16%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            R I+F R ++ AH + +      GL  + ++A  L G+        M+Q  + + ++ F+
Sbjct  546  RVIVFFRQKREAHRVRIVF----GL--LGLKAAELHGS--------MSQEQRIKSVENFR  591

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRY-GLLTNEISMVQARGRARADQSVYAFVATEGS  487
            +G +  L+AT +A  GLDI     V+ Y    ++EI + +    ARA +S  A      +
Sbjct  592  EGKVAFLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTI---A  648

Query  488  RELKRELINEALETLMEQAVAAVQK-MDQA---EYQAKIRD--------LQQAALTKRAA  535
             E  R+++  A++    Q    V + +D A   E+ AK +         LQ+  L K+ A
Sbjct  649  AEPDRKIVKSAVKAGKAQGAKIVSRVVDPAVADEWAAKAKGLEDEIEEVLQEEKLEKQMA  708

Query  536  QA  537
            QA
Sbjct  709  QA  710


>sp|A6RGE3|DBP2_AJECN ATP-dependent RNA helicase DBP2 OS=Ajellomyces 
capsulatus (strain NAm1 / WU24) OX=2059318 GN=DBP2 PE=3 
SV=1
Length=542

 Score = 39.3 bits (90),  Expect = 0.14, Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 70/152 (46%), Gaps = 18/152 (12%)

Query  347  ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA  406
            E  K + + K L R   ++   + +IFT T++ A  +  +L+Q  G   + I        
Sbjct  353  EFEKRDRMAKHLDRIMEANKHSKVLIFTGTKRVADDITRFLRQD-GWPALSIH-------  404

Query  407  GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE---I  463
            G+  Q+    +RD   V+ +F+ G   ++VAT VA  G+D+     V+ Y    N    +
Sbjct  405  GDKQQN----ERDW--VLNEFKTGKSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYV  458

Query  464  SMVQARGRARADQSVYAFVATEGSRELKRELI  495
              +   GRA A  +      T+ +++  R+L+
Sbjct  459  HRIGRTGRAGAKGTAITLFTTDNAKQ-ARDLV  489


>sp|B7UM74|RECG_ECO27 ATP-dependent DNA helicase RecG OS=Escherichia 
coli O127:H6 (strain E2348/69 / EPEC) OX=574521 GN=recG 
PE=3 SV=1
Length=693

 Score = 39.3 bits (90),  Expect = 0.14, Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 37/62 (60%), Gaps = 9/62 (15%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQAR  469
            M   ++Q V+  F+ G L+LLVAT+V E G+D+P+ ++++     R GL      + Q R
Sbjct  527  MKPAEKQAVMTSFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGL----AQLHQLR  582

Query  470  GR  471
            GR
Sbjct  583  GR  584


>sp|A3LRW2|DBP3_PICST ATP-dependent RNA helicase DBP3 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=DBP3 PE=3 SV=1
Length=526

 Score = 38.9 bits (89),  Expect = 0.14, Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 2/84 (2%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR  473
            ++Q+ +   +  F+ G  +LL+AT VA  GLDIP+  VV+           V   GR  R
Sbjct  396  LSQQQRTNALNSFKKGESSLLLATDVAARGLDIPNVKVVINLTFPLTVEDYVHRIGRTGR  455

Query  474  ADQSVYAF-VATEGSRELKRELIN  496
            A Q+  A  + TE  + L   L+N
Sbjct  456  AGQTGTAHTLFTEHEKHLSGALMN  479


>sp|Q0CZN5|DRS1_ASPTN ATP-dependent RNA helicase drs1 OS=Aspergillus 
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=drs1 
PE=3 SV=1
Length=821

 Score = 39.3 bits (90),  Expect = 0.14, Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 63/124 (51%), Gaps = 16/124 (13%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            R I+F R ++ AH + +      GL  + ++A  L G+        M+Q  + + ++ F+
Sbjct  551  RVIVFFRQKREAHRVRIVF----GL--LGLKAAELHGS--------MSQEQRIKSVENFR  596

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRY-GLLTNEISMVQARGRARADQSVYA-FVATEG  486
            DG +  L+AT +A  GLDI     V+ Y    ++EI + +    ARA +S  A  +A E 
Sbjct  597  DGKVAFLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEP  656

Query  487  SREL  490
             R++
Sbjct  657  DRKV  660


>sp|A6RW79|PRP5_BOTFB Pre-mRNA-processing ATP-dependent RNA helicase 
prp5 OS=Botryotinia fuckeliana (strain B05.10) OX=332648 
GN=prp5 PE=3 SV=2
Length=1179

 Score = 39.3 bits (90),  Expect = 0.14, Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 58/144 (40%), Gaps = 21/144 (15%)

Query  347  ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA  406
            E  K   L ++L   +++    R +IF   ++ A  LL  L ++                
Sbjct  784  EKEKFHRLLELLGELYNTDEDARTLIFVDRQEKADDLLKDLMRK----------------  827

Query  407  GNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTN  461
            G    S H    Q D+   I  F+ G + +++ATSVA  GLD+    +VV +     L +
Sbjct  828  GYPCMSIHGGKDQVDRDSTIDDFKAGVVPIMIATSVAARGLDVKQLKLVVNFDAPNHLED  887

Query  462  EISMVQARGRARADQSVYAFVATE  485
             +      GRA    +   F+  E
Sbjct  888  YVHRAGRTGRAGNTGTAVTFITEE  911


>sp|A6TGG9|RHLB_KLEP7 ATP-dependent RNA helicase RhlB OS=Klebsiella 
pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 
78578) OX=272620 GN=rhlB PE=3 SV=1
Length=421

 Score = 38.9 bits (89),  Expect = 0.14, Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 58/134 (43%), Gaps = 20/134 (15%)

Query  346  PENP-KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI  404
            P N  K+ +L+ +L+ ++      R I+F  T+     +  W      L     R  LL 
Sbjct  238  PSNEEKMRLLQTLLEEEWPD----RAIVFANTKHRCEDI--WGH----LAADGHRVGLLT  287

Query  405  GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
            G         + Q+ +  ++++F  G L++LVAT VA  GL IP    V  Y L  +   
Sbjct  288  G--------DVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCED  339

Query  465  MVQARGR-ARADQS  477
             V   GR  RA  S
Sbjct  340  YVHRIGRTGRAGAS  353


>sp|Q755W0|FAL1_EREGS ATP-dependent RNA helicase FAL1 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=FAL1 PE=3 SV=2
Length=398

 Score = 38.9 bits (89),  Expect = 0.14, Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 48/103 (47%), Gaps = 5/103 (5%)

Query  394  QTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN  451
            + VD  +  LI    +  S H  M Q D+ +V+  F+ G+  +L++T V   G+D+   +
Sbjct  275  KKVDWLSHKLIQNNFAVASIHGDMKQDDRDKVMSDFRSGSSRVLISTDVWARGIDVQQVS  334

Query  452  VVVRYG---LLTNEISMVQARGRARADQSVYAFVATEGSRELK  491
            +V+ Y    LL N I  +   GR         F+  E   +LK
Sbjct  335  LVINYDLPELLENYIHRIGRSGRFGRKGVAINFITREEVTKLK  377


>sp|Q4WH83|DBP3_ASPFU ATP-dependent RNA helicase dbp3 OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 
/ Af293) OX=330879 GN=dbp3 PE=3 SV=1
Length=503

 Score = 38.9 bits (89),  Expect = 0.14, Method: Compositional matrix adjust.
 Identities = 28/85 (33%), Positives = 42/85 (49%), Gaps = 4/85 (5%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL-LTNE--ISMVQARGR  471
            + Q ++ + ++ F+ G+  +LVAT VA  GLDIP   +V+     LT E  +  +   GR
Sbjct  372  LNQHERFKSLEAFKTGSATVLVATDVAARGLDIPSVKLVINVTFPLTVEDYVHRIGRTGR  431

Query  472  ARADQSVYAFVATEGSRELKRELIN  496
            A AD        TE  +     LIN
Sbjct  432  AGADGHAITLF-TEADKAQSGALIN  455


>sp|Q93ZG7|RH38_ARATH DEAD-box ATP-dependent RNA helicase 38 OS=Arabidopsis 
thaliana OX=3702 GN=RH38 PE=1 SV=2
Length=496

 Score = 38.9 bits (89),  Expect = 0.14, Method: Compositional matrix adjust.
 Identities = 24/90 (27%), Positives = 44/90 (49%), Gaps = 14/90 (16%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            IIF +T+ SA  +   L +              +G   +S   ++T+ D+ +++++F++ 
Sbjct  344  IIFVKTKASAQKVHKALAE--------------MGYDVTSVHGNLTESDRDKIVKEFKEC  389

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLT  460
               +L+AT V   G D    N+VV Y L T
Sbjct  390  LTQVLIATDVIARGFDQQRVNLVVNYNLPT  419


>sp|Q65ST2|UVRB_MANSM UvrABC system protein B OS=Mannheimia succiniciproducens 
(strain KCTC 0769BP / MBEL55E) OX=221988 GN=uvrB 
PE=3 SV=1
Length=678

 Score = 39.3 bits (90),  Expect = 0.15, Method: Compositional matrix adjust.
 Identities = 20/56 (36%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + G  ++LV  ++  EGLDIP  ++V      + G L +E S++Q  GRA
Sbjct  492  EIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA  547


>sp|Q5HVA1|UVRB_CAMJR UvrABC system protein B OS=Campylobacter 
jejuni (strain RM1221) OX=195099 GN=uvrB PE=3 SV=1
Length=657

 Score = 39.3 bits (90),  Expect = 0.15, Method: Compositional matrix adjust.
 Identities = 16/59 (27%), Positives = 34/59 (58%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+I+  + G  ++L+  ++  EGLD+P  +++      + G L +  S++Q  GRA
Sbjct  484  ERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGRA  542


>sp|B0JR86|UVRB_MICAN UvrABC system protein B OS=Microcystis aeruginosa 
(strain NIES-843 / IAM M-2473) OX=449447 GN=uvrB PE=3 
SV=1
Length=667

 Score = 39.3 bits (90),  Expect = 0.15, Method: Compositional matrix adjust.
 Identities = 30/109 (28%), Positives = 52/109 (48%), Gaps = 19/109 (17%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            R +I T T++ A  L  +LQ++       I+ + L     S Q          E+IQ  +
Sbjct  446  RVLITTLTKRMAEDLTEYLQER------GIKVRYLHSEIQSIQRI--------EIIQDLR  491

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            +G  ++L+  ++  EGLD+P  ++V      + G L    S++Q  GRA
Sbjct  492  EGVFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRATRSLIQTIGRA  540


>sp|Q8CRP6|CSHA_STAES DEAD-box ATP-dependent RNA helicase CshA 
OS=Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 
1200) OX=176280 GN=cshA PE=3 SV=1
Length=509

 Score = 38.9 bits (89),  Expect = 0.15, Method: Compositional matrix adjust.
 Identities = 25/79 (32%), Positives = 41/79 (52%), Gaps = 2/79 (3%)

Query  396  VDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV  453
            VD     L+  G  ++  H  +TQ  + EV++KF++  +++LVAT VA  GLDI   + V
Sbjct  253  VDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDISGVSHV  312

Query  454  VRYGLLTNEISMVQARGRA  472
              + +  +  S     GR 
Sbjct  313  YNFDIPQDTESYTHRIGRT  331


>sp|Q91372|DDX4_XENLA Probable ATP-dependent RNA helicase DDX4 
OS=Xenopus laevis OX=8355 GN=ddx4 PE=2 SV=1
Length=700

 Score = 39.3 bits (90),  Expect = 0.15, Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 22/112 (20%)

Query  347  ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA  406
            EN K+E L +IL+    SS   R +IF  T++ A  +  +L Q++               
Sbjct  510  ENGKMEKLLEILK----SSEKERTMIFVNTKKKADFIAGYLCQEK---------------  550

Query  407  GNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY  456
              SS S H    Q  ++  +  F+ G   ++V T+VA  GLDI +   V+ Y
Sbjct  551  -FSSTSIHGDREQYQRESALWDFRTGKCTVIVCTAVAARGLDIENVQHVINY  601


>sp|Q5HME0|CSHA_STAEQ DEAD-box ATP-dependent RNA helicase CshA 
OS=Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 
/ BCRC 17069 / CCUG 31568 / BM 3577 / RP62A) OX=176279 GN=cshA 
PE=3 SV=1
Length=509

 Score = 38.9 bits (89),  Expect = 0.15, Method: Compositional matrix adjust.
 Identities = 25/79 (32%), Positives = 41/79 (52%), Gaps = 2/79 (3%)

Query  396  VDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV  453
            VD     L+  G  ++  H  +TQ  + EV++KF++  +++LVAT VA  GLDI   + V
Sbjct  253  VDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDISGVSHV  312

Query  454  VRYGLLTNEISMVQARGRA  472
              + +  +  S     GR 
Sbjct  313  YNFDIPQDTESYTHRIGRT  331


>sp|Q480C7|UVRB_COLP3 UvrABC system protein B OS=Colwellia psychrerythraea 
(strain 34H / ATCC BAA-681) OX=167879 GN=uvrB PE=3 
SV=1
Length=673

 Score = 39.3 bits (90),  Expect = 0.15, Method: Compositional matrix adjust.
 Identities = 19/56 (34%), Positives = 34/56 (61%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+ F+ G  ++LV  ++  EGLD+P  ++V      + G L ++ S++Q  GRA
Sbjct  486  EIIRDFRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRA  541


>sp|P24230|RECG_ECOLI ATP-dependent DNA helicase RecG OS=Escherichia 
coli (strain K12) OX=83333 GN=recG PE=1 SV=1
Length=693

 Score = 39.3 bits (90),  Expect = 0.15, Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 37/62 (60%), Gaps = 9/62 (15%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQAR  469
            M   ++Q V+  F+ G L+LLVAT+V E G+D+P+ ++++     R GL      + Q R
Sbjct  527  MKPAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGL----AQLHQLR  582

Query  470  GR  471
            GR
Sbjct  583  GR  584


>sp|Q9SQV1|RH40_ARATH DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis 
thaliana OX=3702 GN=RH40 PE=2 SV=1
Length=1088

 Score = 39.3 bits (90),  Expect = 0.15, Method: Compositional matrix adjust.
 Identities = 25/68 (37%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query  416  TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA  474
            TQ ++  V+ +F+ G   +L+AT VA  GLDI    VV+ Y   T     V   GR  RA
Sbjct  714  TQGERDWVLNQFRSGKSCVLIATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRA  773

Query  475  DQSVYAFV  482
              +  AF 
Sbjct  774  GATGVAFT  781


 Score = 38.5 bits (88),  Expect = 0.25, Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 61/137 (45%), Gaps = 13/137 (9%)

Query  3    LRSYQWEVIMPALEGKNIIIWLPTGAGKTRA---AAYVAKRHL--ETVDGAKVVVLVNRV  57
            +++  W +   AL+ ++I+    TG+GKT      A++  RH   ++ +G  V++L    
Sbjct  461  IQAQTWPI---ALQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSRNGPTVLILAPTR  517

Query  58   HLVTQ-HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE  116
             L TQ   E  R     R + T L G          L R  D+++ T   L   L    E
Sbjct  518  ELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELERGADIVVATPGRLNDIL----E  573

Query  117  EEHVELTVFSLIVVDEC  133
             + ++    SL+V+DE 
Sbjct  574  MKMIDFQQVSLLVLDEA  590


>sp|Q7NTA7|UVRB_CHRVO UvrABC system protein B OS=Chromobacterium 
violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / CCUG 
213 / NBRC 12614 / NCIMB 9131 / NCTC 9757 / MK) OX=243365 
GN=uvrB PE=3 SV=1
Length=670

 Score = 39.3 bits (90),  Expect = 0.15, Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 9/77 (12%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA----  472
            E+I+  + G  ++L+  ++  EGLDIP  ++V      + G L +E S++Q  GRA    
Sbjct  491  EIIRDLRLGMFDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNL  550

Query  473  RADQSVYAFVATEGSRE  489
            R    +YA   T+  R+
Sbjct  551  RGKALLYADRITDSMRK  567


>sp|Q9PPM7|UVRB_CAMJE UvrABC system protein B OS=Campylobacter 
jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 
11168) OX=192222 GN=uvrB PE=3 SV=1
Length=657

 Score = 38.9 bits (89),  Expect = 0.15, Method: Compositional matrix adjust.
 Identities = 16/59 (27%), Positives = 34/59 (58%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+I+  + G  ++L+  ++  EGLD+P  +++      + G L +  S++Q  GRA
Sbjct  484  ERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGRA  542


>sp|Q72XV1|UVRB_BACC1 UvrABC system protein B OS=Bacillus cereus 
(strain ATCC 10987 / NRS 248) OX=222523 GN=uvrB PE=3 SV=1
Length=658

 Score = 38.9 bits (89),  Expect = 0.15, Method: Compositional matrix adjust.
 Identities = 20/56 (36%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + G  ++LV  ++  EGLDIP  ++V      + G L +E S++Q  GRA
Sbjct  486  EIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA  541


>sp|P41380|IF4A3_NICPL Eukaryotic initiation factor 4A-3 OS=Nicotiana 
plumbaginifolia OX=4092 PE=2 SV=1
Length=391

 Score = 38.9 bits (89),  Expect = 0.15, Method: Compositional matrix adjust.
 Identities = 19/64 (30%), Positives = 34/64 (53%), Gaps = 0/64 (0%)

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
            SS    M Q+++  ++ +F+ GT  +L+ T V   GLD+   ++V+ Y L  N    +  
Sbjct  285  SSMHGDMPQKERDAIMAEFRGGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHR  344

Query  469  RGRA  472
             GR+
Sbjct  345  IGRS  348


>sp|Q8XD86|RECG_ECO57 ATP-dependent DNA helicase RecG OS=Escherichia 
coli O157:H7 OX=83334 GN=recG PE=3 SV=1
Length=693

 Score = 38.9 bits (89),  Expect = 0.15, Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 37/62 (60%), Gaps = 9/62 (15%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQAR  469
            M   ++Q V+  F+ G L+LLVAT+V E G+D+P+ ++++     R GL      + Q R
Sbjct  527  MKPAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGL----AQLHQLR  582

Query  470  GR  471
            GR
Sbjct  583  GR  584


>sp|Q3SIK7|UVRB_THIDA UvrABC system protein B OS=Thiobacillus 
denitrificans (strain ATCC 25259) OX=292415 GN=uvrB PE=3 SV=1
Length=675

 Score = 38.9 bits (89),  Expect = 0.15, Method: Compositional matrix adjust.
 Identities = 20/56 (36%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + G  ++LV  ++  EGLDIP  ++V      + G L +E S++Q  GRA
Sbjct  491  EIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA  546


>sp|Q6FW42|DRS1_CANGA ATP-dependent RNA helicase DRS1 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DRS1 PE=3 SV=1
Length=725

 Score = 38.9 bits (89),  Expect = 0.16, Method: Compositional matrix adjust.
 Identities = 25/101 (25%), Positives = 44/101 (44%), Gaps = 14/101 (14%)

Query  358  LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ  417
            L R+   +   R ++F   +  AH L + L               L+G   +     +TQ
Sbjct  445  LIRKLDPNGQKRIVVFVARKDMAHKLRIILG--------------LLGMAVAELHGSLTQ  490

Query  418  RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL  458
              + + + KF+   + +L+ T +A  GLDIP   VV+ Y +
Sbjct  491  EQRLDSVNKFKSLQVPVLICTDLASRGLDIPKIEVVINYDM  531


>sp|Q8CWX7|UVRB_STRMU UvrABC system protein B OS=Streptococcus 
mutans serotype c (strain ATCC 700610 / UA159) OX=210007 GN=uvrB 
PE=3 SV=1
Length=663

 Score = 38.9 bits (89),  Expect = 0.16, Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 58/128 (45%), Gaps = 11/128 (9%)

Query  370  GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD  429
            G I TR  +   + +  L ++      D   ++  G       + +   ++ E+I+  + 
Sbjct  441  GEINTRADKGERTFITTLTKKMAEDLTDYLKEM--GVKVKYMHSDIKTLERTEIIRDLRL  498

Query  430  GTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGR-ARADQS---VYA  480
            G  ++L+  ++  EG+D+P  ++V      + G L NE  ++Q  GR AR  Q    +YA
Sbjct  499  GVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSQGHVIMYA  558

Query  481  FVATEGSR  488
               T+  R
Sbjct  559  DTVTQSMR  566


>sp|Q631I6|UVRB_BACCZ UvrABC system protein B OS=Bacillus cereus 
(strain ZK / E33L) OX=288681 GN=uvrB PE=3 SV=1
Length=658

 Score = 38.9 bits (89),  Expect = 0.16, Method: Compositional matrix adjust.
 Identities = 20/56 (36%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + G  ++LV  ++  EGLDIP  ++V      + G L +E S++Q  GRA
Sbjct  486  EIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA  541


>sp|A2QQA8|PRP5_ASPNC Pre-mRNA-processing ATP-dependent RNA helicase 
prp5 OS=Aspergillus niger (strain ATCC MYA-4892 / CBS 
513.88 / FGSC A1513) OX=425011 GN=prp5 PE=3 SV=2
Length=1180

 Score = 39.3 bits (90),  Expect = 0.16, Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 41/90 (46%), Gaps = 18/90 (20%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQK  426
            R +IF   +++A +LL  L ++                G    S H    Q D+   I+ 
Sbjct  801  RALIFVDRQEAADALLRELMRK----------------GYPCMSIHGGKDQIDRDSTIED  844

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRY  456
            F+ G   +L+ATSVA  GLD+    +VV Y
Sbjct  845  FKAGIFPVLIATSVAARGLDVKQLKLVVNY  874


>sp|B5XYY9|RHLB_KLEP3 ATP-dependent RNA helicase RhlB OS=Klebsiella 
pneumoniae (strain 342) OX=507522 GN=rhlB PE=3 SV=1
Length=421

 Score = 38.9 bits (89),  Expect = 0.16, Method: Compositional matrix adjust.
 Identities = 37/129 (29%), Positives = 55/129 (43%), Gaps = 19/129 (15%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +L+ ++      R IIF  T+     +  W      L     R  LL G    
Sbjct  243  KMRLLQTLLEEEWPD----RAIIFANTKHRCEDI--WGH----LAADGHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q+ +  ++ +F  G L++LVAT VA  GL IP    V  Y L  +    V   
Sbjct  289  ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI  344

Query  470  GR-ARADQS  477
            GR  RA  S
Sbjct  345  GRTGRAGAS  353


>sp|B0CE09|UVRB_ACAM1 UvrABC system protein B OS=Acaryochloris 
marina (strain MBIC 11017) OX=329726 GN=uvrB PE=3 SV=1
Length=668

 Score = 38.9 bits (89),  Expect = 0.16, Method: Compositional matrix adjust.
 Identities = 27/109 (25%), Positives = 53/109 (49%), Gaps = 19/109 (17%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            R +I T T++ A  L  + +++       +R + L    N+ Q          E+++  +
Sbjct  446  RTLITTLTKRMAEDLTEYFEER------GVRVRYLHSEINAIQRI--------EILRDLR  491

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            +G  ++L+  ++  EGLD+P  ++V      + G L  E S++Q  GRA
Sbjct  492  EGVFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRA  540


>sp|A7ENE0|PRP5_SCLS1 Pre-mRNA-processing ATP-dependent RNA helicase 
prp5 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 
1980 / Ss-1) OX=665079 GN=prp5 PE=3 SV=1
Length=1114

 Score = 39.3 bits (90),  Expect = 0.16, Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 58/144 (40%), Gaps = 21/144 (15%)

Query  347  ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA  406
            E  K   L ++L   +++    R +IF   ++ A  LL  L ++                
Sbjct  713  EKEKFHRLLELLGELYNADEDARTLIFVDRQEKADDLLKDLMRK----------------  756

Query  407  GNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTN  461
            G    S H    Q D+   I  F+ G + +++ATSVA  GLD+    +VV +     L +
Sbjct  757  GYPCMSIHGGKDQVDRDSTIDDFKAGVVPIMIATSVAARGLDVKQLKLVVNFDAPNHLED  816

Query  462  EISMVQARGRARADQSVYAFVATE  485
             +      GRA    +   F+  E
Sbjct  817  YVHRAGRTGRAGNTGTAVTFITEE  840


>sp|A6SFV4|DBP8_BOTFB ATP-dependent RNA helicase dbp8 OS=Botryotinia 
fuckeliana (strain B05.10) OX=332648 GN=dbp8 PE=3 SV=1
Length=545

 Score = 38.9 bits (89),  Expect = 0.16, Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 43/80 (54%), Gaps = 2/80 (3%)

Query  413  THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-  471
            + + QR + + + +F+     +LVAT VA  GLDIP   +V+ Y +  +    +   GR 
Sbjct  403  SKLPQRQRIDNLGRFRASAARILVATDVAARGLDIPEVGLVINYDIPRDPDDYIHRVGRT  462

Query  472  ARADQSVYAFVATEGSRELK  491
            ARA +   A V+  G R+++
Sbjct  463  ARAGRKGEA-VSFVGQRDVQ  481


>sp|Q9CWT6|DDX28_MOUSE Probable ATP-dependent RNA helicase DDX28 
OS=Mus musculus OX=10090 GN=Ddx28 PE=2 SV=2
Length=540

 Score = 38.9 bits (89),  Expect = 0.16, Method: Compositional matrix adjust.
 Identities = 22/65 (34%), Positives = 30/65 (46%), Gaps = 5/65 (8%)

Query  423  VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-----ARADQS  477
            + Q FQ G+ N+LV T +A  GLD  H  VV+ Y         +   GR     +    S
Sbjct  439  IFQSFQKGSQNILVCTDIASRGLDSVHVEVVINYDFPPTLQDYIHRAGRVGRVGSEVPGS  498

Query  478  VYAFV  482
            V +FV
Sbjct  499  VISFV  503


>sp|Q5P0E7|UVRB_AROAE UvrABC system protein B OS=Aromatoleum aromaticum 
(strain DSM 19018 / LMG 30748 / EbN1) OX=76114 GN=uvrB 
PE=3 SV=1
Length=685

 Score = 38.9 bits (89),  Expect = 0.16, Method: Compositional matrix adjust.
 Identities = 20/56 (36%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + G  ++LV  ++  EGLDIP  ++V      + G L +E S++Q  GRA
Sbjct  499  EIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA  554


>sp|Q8NJM2|DBP10_ASPFU ATP-dependent RNA helicase dbp10 OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC 
A1100 / Af293) OX=330879 GN=dbp10 PE=3 SV=1
Length=869

 Score = 39.3 bits (90),  Expect = 0.16, Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 53/113 (47%), Gaps = 6/113 (5%)

Query  372  IFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQD  429
            + TR   + HS +++   +     VD    LL  AG +    +  + Q  ++  +Q F+ 
Sbjct  346  VNTRESPTKHSTIVFAATKH---HVDYLYSLLCEAGFAVSYVYGSLDQTARKIQVQNFRT  402

Query  430  GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF  481
            G  N+LV T VA  G+DIP    V+ Y   +     V   GR ARA +  +++
Sbjct  403  GMTNILVVTDVAARGIDIPILANVINYDFPSQPKIFVHRVGRTARAGRKGWSY  455


>sp|Q6HBC2|UVRB_BACHK UvrABC system protein B OS=Bacillus thuringiensis 
subsp. konkukian (strain 97-27) OX=281309 GN=uvrB 
PE=3 SV=1
Length=658

 Score = 38.9 bits (89),  Expect = 0.17, Method: Compositional matrix adjust.
 Identities = 20/56 (36%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + G  ++LV  ++  EGLDIP  ++V      + G L +E S++Q  GRA
Sbjct  486  EIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA  541


>sp|Q815I3|UVRB_BACCR UvrABC system protein B OS=Bacillus cereus 
(strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 
15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711) OX=226900 GN=uvrB 
PE=3 SV=1
Length=658

 Score = 38.9 bits (89),  Expect = 0.17, Method: Compositional matrix adjust.
 Identities = 20/56 (36%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + G  ++LV  ++  EGLDIP  ++V      + G L +E S++Q  GRA
Sbjct  486  EIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA  541


>sp|Q81X47|UVRB_BACAN UvrABC system protein B OS=Bacillus anthracis 
OX=1392 GN=uvrB PE=3 SV=1
Length=658

 Score = 38.9 bits (89),  Expect = 0.17, Method: Compositional matrix adjust.
 Identities = 20/56 (36%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + G  ++LV  ++  EGLDIP  ++V      + G L +E S++Q  GRA
Sbjct  486  EIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA  541


>sp|Q4I830|DRS1_GIBZE ATP-dependent RNA helicase DRS1 OS=Gibberella 
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / 
NRRL 31084 / PH-1) OX=229533 GN=DRS1 PE=3 SV=2
Length=792

 Score = 38.9 bits (89),  Expect = 0.17, Method: Compositional matrix adjust.
 Identities = 28/91 (31%), Positives = 42/91 (46%), Gaps = 20/91 (22%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA-GNSSQSTH--MTQRDQQEVIQ  425
            R IIF R ++ AH                 RA+++ G  G S    H  M Q  +   ++
Sbjct  503  RVIIFFRQKKDAH-----------------RARIIFGLLGLSCAELHGSMNQTQRISSVE  545

Query  426  KFQDGTLNLLVATSVAEEGLDIPHCNVVVRY  456
             F+DG +  L+AT +A  GLDI   + V+ Y
Sbjct  546  DFRDGKVAYLLATDLASRGLDIKGVDTVINY  576


>sp|Q6BML1|PRP5_DEBHA Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 
767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 
GN=PRP5 PE=3 SV=2
Length=913

 Score = 38.9 bits (89),  Expect = 0.17, Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 5/79 (6%)

Query  417  QRDQQEVIQKFQ--DGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGR  471
            Q D++  I++F   +  +N+L+ATS+A  GLD+   N+V+ Y     + + +  V   GR
Sbjct  610  QIDRKHAIREFSSSNSGVNILIATSIAARGLDVKGLNLVINYEAASHMEDYVHRVGRTGR  669

Query  472  ARADQSVYAFVATEGSREL  490
            A    +   FV+++  R +
Sbjct  670  AGRKGTAITFVSSKQGRAI  688


>sp|Q97LQ2|UVRB_CLOAB UvrABC system protein B OS=Clostridium acetobutylicum 
(strain ATCC 824 / DSM 792 / JCM 1419 / IAM 19013 
/ LMG 5710 / NBRC 13948 / NRRL B-527 / VKM B-1787 / 2291 
/ W) OX=272562 GN=uvrB PE=3 SV=1
Length=666

 Score = 38.9 bits (89),  Expect = 0.17, Method: Compositional matrix adjust.
 Identities = 27/112 (24%), Positives = 52/112 (46%), Gaps = 19/112 (17%)

Query  366  NSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQ  425
            N  R ++ T T++ A  L  +L+               +G   +   + +   ++ ++I+
Sbjct  443  NGFRILVTTLTKKMAEDLTDYLKD--------------LGIKTTYMHSDIDTLERMKIIK  488

Query  426  KFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
              + G  ++LV  ++  EGLDIP   +V      + G L +E S++Q  GRA
Sbjct  489  DVRTGEFDVLVGINLLREGLDIPEVALVAILDADKEGFLRSERSLIQTIGRA  540


>sp|Q48KA6|UVRB_PSE14 UvrABC system protein B OS=Pseudomonas savastanoi 
pv. phaseolicola (strain 1448A / Race 6) OX=264730 
GN=uvrB PE=3 SV=1
Length=671

 Score = 38.9 bits (89),  Expect = 0.17, Method: Compositional matrix adjust.
 Identities = 19/56 (34%), Positives = 34/56 (61%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + GT ++LV  ++  EGLD+P  ++V      + G L ++ S++Q  GRA
Sbjct  485  EIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRA  540


>sp|Q5XBN4|UVRB_STRP6 UvrABC system protein B OS=Streptococcus 
pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394) OX=286636 
GN=uvrB PE=3 SV=1
Length=663

 Score = 38.9 bits (89),  Expect = 0.17, Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 22/126 (17%)

Query  352  EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ  411
            ++L +I QR    +   R  I T T++ A  L  +L++              +G      
Sbjct  438  DLLGEINQR---VARDERTFITTLTKKMAEDLTDYLKE--------------MGVKVKYM  480

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMV  466
             + +   ++ E+I+  + G  ++L+  ++  EG+D+P  ++V      + G L NE  ++
Sbjct  481  HSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLI  540

Query  467  QARGRA  472
            Q  GRA
Sbjct  541  QTIGRA  546


>sp|Q55CP6|DDX1_DICDI Probable ATP-dependent RNA helicase ddx1 
OS=Dictyostelium discoideum OX=44689 GN=ddx1 PE=3 SV=1
Length=765

 Score = 38.9 bits (89),  Expect = 0.17, Method: Compositional matrix adjust.
 Identities = 30/113 (27%), Positives = 52/113 (46%), Gaps = 12/113 (11%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL----LIGAGNSSQSTHMTQRDQQEVI  424
            + IIF RTR     +  +L+   G  T  +  +     L G  N S       R +++ +
Sbjct  536  QAIIFARTRLDCDHIHQFLKDAGGGNTSGLEGEFSSTVLHGGDNIS-------RARKDNL  588

Query  425  QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQ  476
            +KF++G +  L+ T VA  G+DI     ++ Y L  +    +   GR  R+D+
Sbjct  589  EKFRNGDVRFLICTDVAARGIDIRGLPYMINYTLPESFEDYIHRVGRVGRSDR  641


>sp|Q884C9|UVRB_PSESM UvrABC system protein B OS=Pseudomonas syringae 
pv. tomato (strain ATCC BAA-871 / DC3000) OX=223283 
GN=uvrB PE=3 SV=1
Length=671

 Score = 38.9 bits (89),  Expect = 0.17, Method: Compositional matrix adjust.
 Identities = 19/56 (34%), Positives = 34/56 (61%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + GT ++LV  ++  EGLD+P  ++V      + G L ++ S++Q  GRA
Sbjct  485  EIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRA  540


>sp|Q4WRV2|DRS1_ASPFU ATP-dependent RNA helicase drs1 OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 
/ Af293) OX=330879 GN=drs1 PE=3 SV=1
Length=830

 Score = 38.9 bits (89),  Expect = 0.17, Method: Compositional matrix adjust.
 Identities = 49/182 (27%), Positives = 86/182 (47%), Gaps = 30/182 (16%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            R I+F R ++ AH + +      GL  + ++A  L G+        M+Q  + + ++ F+
Sbjct  557  RVIVFFRQKREAHRVRIVF----GL--LGLKAAELHGS--------MSQEQRIKSVENFR  602

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRY-GLLTNEISMVQARGRARADQSVYAFVATEGS  487
            +G +  L+AT +A  GLDI     V+ Y    ++EI + +    ARA +S  A      +
Sbjct  603  EGKVAFLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTI---A  659

Query  488  RELKRELINEALETLMEQAVAAVQK-MDQA---EYQAKIRD--------LQQAALTKRAA  535
             E  R+++  A++    Q    V + +D A   E+ AK +         LQ+  L K+ A
Sbjct  660  AEPDRKIVKSAVKAGKAQGAKIVSRVVDPAVADEWAAKAKGLEDEIEEVLQEEKLEKQMA  719

Query  536  QA  537
            QA
Sbjct  720  QA  721


>sp|A5DE68|FAL1_PICGU ATP-dependent RNA helicase FAL1 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=FAL1 PE=3 
SV=2
Length=397

 Score = 38.5 bits (88),  Expect = 0.17, Method: Compositional matrix adjust.
 Identities = 16/58 (28%), Positives = 35/58 (60%), Gaps = 0/58 (0%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA  472
            M Q D+  ++++F+ G+  +L++T V   G+D+   ++V+ Y L  ++ + V   GR+
Sbjct  297  MKQEDRDSIMKEFRSGSTRVLISTDVWARGIDVQQVSLVINYDLPLDKENYVHRIGRS  354


>sp|Q4L7W0|CSHA_STAHJ DEAD-box ATP-dependent RNA helicase CshA 
OS=Staphylococcus haemolyticus (strain JCSC1435) OX=279808 
GN=cshA PE=3 SV=1
Length=503

 Score = 38.9 bits (89),  Expect = 0.17, Method: Compositional matrix adjust.
 Identities = 25/79 (32%), Positives = 41/79 (52%), Gaps = 2/79 (3%)

Query  396  VDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV  453
            VD     L+  G  ++  H  +TQ  + EV++KF++  +++LVAT VA  GLDI   + V
Sbjct  253  VDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDISGVSHV  312

Query  454  VRYGLLTNEISMVQARGRA  472
              + +  +  S     GR 
Sbjct  313  YNFDIPQDTESYTHRIGRT  331


>sp|Q2UKX3|DBP8_ASPOR ATP-dependent RNA helicase dbp8 OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=dbp8 
PE=3 SV=1
Length=443

 Score = 38.5 bits (88),  Expect = 0.17, Method: Compositional matrix adjust.
 Identities = 28/109 (26%), Positives = 52/109 (48%), Gaps = 6/109 (6%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQ  428
            ++ +  R S    +++    +   T D+  ++L    +   S H  + Q ++   + +F+
Sbjct  259  VLLSTERNSTKPAIIFCNHTK---TADLLERMLRRLSHRVTSLHSLLPQSERNSNLARFR  315

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQ  476
                 +LVAT VA  GLDIP  ++V+ + +  N    V   GR ARA +
Sbjct  316  ASAARILVATDVASRGLDIPSVSLVINFDVPRNPDDYVHRVGRTARAGR  364


>sp|Q1JGE8|UVRB_STRPD UvrABC system protein B OS=Streptococcus 
pyogenes serotype M2 (strain MGAS10270) OX=370552 GN=uvrB PE=3 
SV=1
Length=663

 Score = 38.9 bits (89),  Expect = 0.17, Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 22/126 (17%)

Query  352  EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ  411
            ++L +I QR    +   R  I T T++ A  L  +L++              +G      
Sbjct  438  DLLGEINQR---VARDERTFITTLTKKMAEDLTDYLKE--------------MGVKVKYM  480

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMV  466
             + +   ++ E+I+  + G  ++L+  ++  EG+D+P  ++V      + G L NE  ++
Sbjct  481  HSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLI  540

Query  467  QARGRA  472
            Q  GRA
Sbjct  541  QTIGRA  546


>sp|Q4ZV05|UVRB_PSEU2 UvrABC system protein B OS=Pseudomonas syringae 
pv. syringae (strain B728a) OX=205918 GN=uvrB PE=3 SV=1
Length=671

 Score = 38.9 bits (89),  Expect = 0.17, Method: Compositional matrix adjust.
 Identities = 19/56 (34%), Positives = 34/56 (61%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + GT ++LV  ++  EGLD+P  ++V      + G L ++ S++Q  GRA
Sbjct  485  EIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRA  540


>sp|Q47EI2|UVRB_DECAR UvrABC system protein B OS=Dechloromonas 
aromatica (strain RCB) OX=159087 GN=uvrB PE=3 SV=1
Length=690

 Score = 38.9 bits (89),  Expect = 0.18, Method: Compositional matrix adjust.
 Identities = 20/56 (36%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + G  ++LV  ++  EGLDIP  ++V      + G L +E S++Q  GRA
Sbjct  499  EIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA  554


>sp|Q6LZA2|UVRB_METMP UvrABC system protein B OS=Methanococcus 
maripaludis (strain DSM 14266 / JCM 13030 / NBRC 101832 / S2 
/ LL) OX=267377 GN=uvrB PE=3 SV=1
Length=646

 Score = 38.9 bits (89),  Expect = 0.18, Method: Compositional matrix adjust.
 Identities = 30/109 (28%), Positives = 53/109 (49%), Gaps = 19/109 (17%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            R +I T T++ A  L  +L ++      +++A+ L    ++ + T        E+I+  +
Sbjct  445  RVLITTLTKRLAEELTEYLAKR------NVKARYLHSDIDTIERT--------EIIRNLR  490

Query  429  DGTLNLLVATSVAEEGLDIPHCNVV-----VRYGLLTNEISMVQARGRA  472
             G  + LV  ++  EGLDIP    V      + G L N+ S++Q  GRA
Sbjct  491  LGKFDCLVGINLLREGLDIPEVGFVGILDADKEGFLRNDKSLIQTIGRA  539


>sp|C0MDC6|UVRB_STRS7 UvrABC system protein B OS=Streptococcus 
equi subsp. zooepidemicus (strain H70) OX=553483 GN=uvrB PE=3 
SV=1
Length=663

 Score = 38.9 bits (89),  Expect = 0.18, Method: Compositional matrix adjust.
 Identities = 25/109 (23%), Positives = 50/109 (46%), Gaps = 19/109 (17%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            R  I T T++ A  L  +L++              +G       + +   ++ E+I+  +
Sbjct  452  RTFITTLTKKMAEDLTDYLKE--------------MGVKVKYMHSDIKTLERTEIIRDLR  497

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
             G  ++L+  ++  EG+D+P  ++V      + G L NE  ++Q  GRA
Sbjct  498  LGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRA  546


>sp|A0RPB3|UVRB_CAMFF UvrABC system protein B OS=Campylobacter 
fetus subsp. fetus (strain 82-40) OX=360106 GN=uvrB PE=3 SV=1
Length=658

 Score = 38.9 bits (89),  Expect = 0.18, Method: Compositional matrix adjust.
 Identities = 18/59 (31%), Positives = 34/59 (58%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +  S++Q  GRA
Sbjct  486  ERNELIRGLRKGEFDMLVGINLLREGLDLPEVSLVAVLDADKEGFLRSRTSLIQTMGRA  544


>sp|Q2GUI4|DBP3_CHAGB ATP-dependent RNA helicase DBP3 OS=Chaetomium 
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 
6347 / NRRL 1970) OX=306901 GN=DBP3 PE=3 SV=1
Length=566

 Score = 38.9 bits (89),  Expect = 0.18, Method: Compositional matrix adjust.
 Identities = 29/109 (27%), Positives = 53/109 (49%), Gaps = 14/109 (13%)

Query  346  PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
            P   +  +LE + + Q  S+ + R ++F   ++ A      ++ +Q L+   IR   + G
Sbjct  431  PRGKEQRLLELLKEAQKGSAKNDRILVFCLYKKEA------VRVEQNLERRGIRVCSIHG  484

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV  454
                     + Q  +   ++ F+ GT ++LVAT VA  GLDIP   +V+
Sbjct  485  --------DLRQDQRTRSLESFKAGTTSVLVATDVAARGLDIPEVKLVI  525


>sp|B4U3P4|UVRB_STREM UvrABC system protein B OS=Streptococcus 
equi subsp. zooepidemicus (strain MGCS10565) OX=552526 GN=uvrB 
PE=3 SV=1
Length=663

 Score = 38.9 bits (89),  Expect = 0.18, Method: Compositional matrix adjust.
 Identities = 25/109 (23%), Positives = 50/109 (46%), Gaps = 19/109 (17%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            R  I T T++ A  L  +L++              +G       + +   ++ E+I+  +
Sbjct  452  RTFITTLTKKMAEDLTDYLKE--------------MGVKVKYMHSDIKTLERTEIIRDLR  497

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
             G  ++L+  ++  EG+D+P  ++V      + G L NE  ++Q  GRA
Sbjct  498  LGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRA  546


>sp|Q9DGP9|DDX25_XENLA ATP-dependent RNA helicase DDX25 OS=Xenopus 
laevis OX=8355 GN=deadsouth PE=2 SV=1
Length=483

 Score = 38.5 bits (88),  Expect = 0.18, Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 47/93 (51%), Gaps = 14/93 (15%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            + I+F +TR+ A     WL Q+  L     +  LL G         +   D+ ++IQ+F+
Sbjct  340  QAIVFCQTRKIAS----WLSQK--LSDDGHQVALLSG--------ELPVYDRADMIQRFR  385

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN  461
            +G   +LV T+V   G+D+   ++VV + L  N
Sbjct  386  EGREKVLVTTNVCARGIDVEQVSIVVNFDLPVN  418


>sp|Q87MX6|UVRB_VIBPA UvrABC system protein B OS=Vibrio parahaemolyticus 
serotype O3:K6 (strain RIMD 2210633) OX=223926 GN=uvrB 
PE=3 SV=1
Length=676

 Score = 38.9 bits (89),  Expect = 0.18, Method: Compositional matrix adjust.
 Identities = 28/114 (25%), Positives = 56/114 (49%), Gaps = 19/114 (17%)

Query  364  SSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEV  423
            ++   R ++ T T++ A  L  +L +       D+R + L         + +   ++ E+
Sbjct  444  AAKEERVLVTTLTKRMAEDLTEYLHEH------DVRVRYL--------HSDIDTVERVEI  489

Query  424  IQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  490  IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  543


>sp|Q8P0J7|UVRB_STRP8 UvrABC system protein B OS=Streptococcus 
pyogenes serotype M18 (strain MGAS8232) OX=186103 GN=uvrB PE=3 
SV=1
Length=663

 Score = 38.9 bits (89),  Expect = 0.18, Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 22/126 (17%)

Query  352  EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ  411
            ++L +I QR    +   R  I T T++ A  L  +L++              +G      
Sbjct  438  DLLGEINQR---VARDERTFITTLTKKMAEDLTDYLKE--------------MGVKVKYM  480

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMV  466
             + +   ++ E+I+  + G  ++L+  ++  EG+D+P  ++V      + G L NE  ++
Sbjct  481  HSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLI  540

Query  467  QARGRA  472
            Q  GRA
Sbjct  541  QTIGRA  546


>sp|Q5UYC8|UVRB_HALMA UvrABC system protein B OS=Haloarcula marismortui 
(strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) 
OX=272569 GN=uvrB PE=3 SV=1
Length=686

 Score = 38.9 bits (89),  Expect = 0.18, Method: Compositional matrix adjust.
 Identities = 31/126 (25%), Positives = 58/126 (46%), Gaps = 22/126 (17%)

Query  352  EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ  411
            ++LE+I  R        R ++ T T++ A  L  +L++               G   +  
Sbjct  446  DLLERIDDR---VDRDERVLVTTLTKRMAEDLTEYLEES--------------GVNVAYM  488

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMV  466
                   ++ E+I+  + G +++LV  ++  EGLDIP  ++V      + G L +E ++V
Sbjct  489  HDETDTLERHELIRSLRLGDIDVLVGINLLREGLDIPEVSLVAILDADQEGFLRSETTLV  548

Query  467  QARGRA  472
            Q  GRA
Sbjct  549  QTMGRA  554


>sp|F1NTD6|ASCC3_CHICK Activating signal cointegrator 1 complex 
subunit 3 OS=Gallus gallus OX=9031 GN=ascc3 PE=3 SV=2
Length=2211

 Score = 38.9 bits (89),  Expect = 0.19, Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 77/157 (49%), Gaps = 14/157 (9%)

Query  19    NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRW--T  76
             N+++  PTG+GKT AA     R       +K V +     LV +  E+++  ++ +    
Sbjct  1353  NVLLGAPTGSGKTVAAELAIFRVFNKYPTSKAVYIAPLKALVRERIEDWKVRIEEKLGKK  1412

Query  77    VTTLSGDMGP--RAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECH  134
             V  L+GD+ P  RA    +A+  DL++ T E       S +   +V+    S++++DE H
Sbjct  1413  VVELTGDVTPDMRA----IAQA-DLIVTTPEKWDGVSRSWQNRSYVQKV--SILIIDEIH  1465

Query  135   --HTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS  169
                  +  V  VI+S+   +     +P+ +V+GL+ +
Sbjct  1466  LLGDERGPVLEVIVSRTNFISSHTEKPV-RVVGLSTA  1501


 Score = 38.5 bits (88),  Expect = 0.26, Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 80/173 (46%), Gaps = 34/173 (20%)

Query  17   GKNIIIWLPTGAGKTRAAAYVA----KRHLE----TVDGAKVVVLVNRVHLVTQHGEEFR  68
             +N++I  PTGAGKT  A        ++H++      D  K+V +     L  +    F 
Sbjct  501  NENMLICAPTGAGKTNIAMLTVLHEIRQHVQHGVIKKDEFKIVYVAPMKALAAEMTNYFS  560

Query  69   RMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELT----  123
            + L+    TV  L+GDM  +   G + R            QM +T+PE+ + V       
Sbjct  561  KRLEPLGITVKELTGDM--QLSKGEILRT-----------QMLVTTPEKWDVVTRKSVGD  607

Query  124  -----VFSLIVVDECHHTHKD--TVYNVIMSQYLELKLQRAQPLPQVLGLTAS  169
                 +  L+++DE H  H+D   V   I+++ L  +++  Q + ++LGL+A+
Sbjct  608  VALSQLVKLLILDEVHLLHEDRGPVLESIVARTLR-QVESTQSMIRILGLSAT  659


>sp|Q0SW76|UVRB_CLOPS UvrABC system protein B OS=Clostridium perfringens 
(strain SM101 / Type A) OX=289380 GN=uvrB PE=3 SV=1
Length=659

 Score = 38.9 bits (89),  Expect = 0.19, Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 63/124 (51%), Gaps = 25/124 (20%)

Query  354  LEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQST  413
            +++ +QR F      R +I T T++ A  L  +L+       ++++A  +         +
Sbjct  437  IQRTVQRGF------RVLITTLTKRMAEDLTKYLKD------LNVKATYM--------HS  476

Query  414  HMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQA  468
             +   ++ ++I++ + G +++L+  ++  EGLDIP   +V      + G L +E S++Q 
Sbjct  477  DIDTLERMKIIRELRLGEVDVLIGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQT  536

Query  469  RGRA  472
             GRA
Sbjct  537  IGRA  540


>sp|Q48SZ1|UVRB_STRPM UvrABC system protein B OS=Streptococcus 
pyogenes serotype M28 (strain MGAS6180) OX=319701 GN=uvrB PE=3 
SV=1
Length=663

 Score = 38.9 bits (89),  Expect = 0.19, Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 22/126 (17%)

Query  352  EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ  411
            ++L +I QR    +   R  I T T++ A  L  +L++              +G      
Sbjct  438  DLLGEINQR---VARDERTFITTLTKKMAEDLTDYLKE--------------MGVKVKYM  480

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMV  466
             + +   ++ E+I+  + G  ++L+  ++  EG+D+P  ++V      + G L NE  ++
Sbjct  481  HSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLI  540

Query  467  QARGRA  472
            Q  GRA
Sbjct  541  QTIGRA  546


>sp|C0MBD7|UVRB_STRE4 UvrABC system protein B OS=Streptococcus 
equi subsp. equi (strain 4047) OX=553482 GN=uvrB PE=3 SV=1
Length=663

 Score = 38.9 bits (89),  Expect = 0.19, Method: Compositional matrix adjust.
 Identities = 25/109 (23%), Positives = 50/109 (46%), Gaps = 19/109 (17%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            R  I T T++ A  L  +L++              +G       + +   ++ E+I+  +
Sbjct  452  RTFITTLTKKMAEDLTDYLKE--------------MGVKVKYMHSDIKTLERTEIIRDLR  497

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
             G  ++L+  ++  EG+D+P  ++V      + G L NE  ++Q  GRA
Sbjct  498  LGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRA  546


>sp|P0DH39|UVRB_STRPQ UvrABC system protein B OS=Streptococcus 
pyogenes serotype M3 (strain SSI-1) OX=193567 GN=uvrB PE=3 
SV=1
Length=663

 Score = 38.9 bits (89),  Expect = 0.19, Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 22/126 (17%)

Query  352  EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ  411
            ++L +I QR    +   R  I T T++ A  L  +L++              +G      
Sbjct  438  DLLGEINQR---VARDERTFITTLTKKMAEDLTDYLKE--------------MGVKVKYM  480

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMV  466
             + +   ++ E+I+  + G  ++L+  ++  EG+D+P  ++V      + G L NE  ++
Sbjct  481  HSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLI  540

Query  467  QARGRA  472
            Q  GRA
Sbjct  541  QTIGRA  546


>sp|Q1JLB5|UVRB_STRPC UvrABC system protein B OS=Streptococcus 
pyogenes serotype M12 (strain MGAS9429) OX=370551 GN=uvrB PE=3 
SV=1
Length=663

 Score = 38.9 bits (89),  Expect = 0.19, Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 22/126 (17%)

Query  352  EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ  411
            ++L +I QR    +   R  I T T++ A  L  +L++              +G      
Sbjct  438  DLLGEINQR---VARDERTFITTLTKKMAEDLTDYLKE--------------MGVKVKYM  480

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMV  466
             + +   ++ E+I+  + G  ++L+  ++  EG+D+P  ++V      + G L NE  ++
Sbjct  481  HSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLI  540

Query  467  QARGRA  472
            Q  GRA
Sbjct  541  QTIGRA  546


>sp|Q1JBD1|UVRB_STRPB UvrABC system protein B OS=Streptococcus 
pyogenes serotype M12 (strain MGAS2096) OX=370553 GN=uvrB PE=3 
SV=1
Length=663

 Score = 38.9 bits (89),  Expect = 0.19, Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 22/126 (17%)

Query  352  EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ  411
            ++L +I QR    +   R  I T T++ A  L  +L++              +G      
Sbjct  438  DLLGEINQR---VARDERTFITTLTKKMAEDLTDYLKE--------------MGVKVKYM  480

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMV  466
             + +   ++ E+I+  + G  ++L+  ++  EG+D+P  ++V      + G L NE  ++
Sbjct  481  HSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLI  540

Query  467  QARGRA  472
            Q  GRA
Sbjct  541  QTIGRA  546


>sp|P0DH38|UVRB_STRP3 UvrABC system protein B OS=Streptococcus 
pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315) OX=198466 
GN=uvrB PE=3 SV=1
Length=663

 Score = 38.9 bits (89),  Expect = 0.19, Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 22/126 (17%)

Query  352  EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ  411
            ++L +I QR    +   R  I T T++ A  L  +L++              +G      
Sbjct  438  DLLGEINQR---VARDERTFITTLTKKMAEDLTDYLKE--------------MGVKVKYM  480

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMV  466
             + +   ++ E+I+  + G  ++L+  ++  EG+D+P  ++V      + G L NE  ++
Sbjct  481  HSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLI  540

Query  467  QARGRA  472
            Q  GRA
Sbjct  541  QTIGRA  546


>sp|Q3K051|UVRB_STRA1 UvrABC system protein B OS=Streptococcus 
agalactiae serotype Ia (strain ATCC 27591 / A909 / CDC SS700) 
OX=205921 GN=uvrB PE=3 SV=1
Length=663

 Score = 38.9 bits (89),  Expect = 0.19, Method: Compositional matrix adjust.
 Identities = 24/108 (22%), Positives = 50/108 (46%), Gaps = 7/108 (6%)

Query  370  GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD  429
            G I  RT +   + +  L ++      D   ++  G       + +   ++ E+I+  + 
Sbjct  441  GEINLRTEKGERTFITTLTKRMAEDLTDYLKEM--GVKVKYMHSDIKTLERTEIIRDLRL  498

Query  430  GTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            G  ++L+  ++  EG+D+P  ++V      + G L NE  ++Q  GRA
Sbjct  499  GVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRA  546


>sp|A2RE43|UVRB_STRPG UvrABC system protein B OS=Streptococcus 
pyogenes serotype M5 (strain Manfredo) OX=160491 GN=uvrB PE=3 
SV=1
Length=663

 Score = 38.9 bits (89),  Expect = 0.19, Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 22/126 (17%)

Query  352  EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ  411
            ++L +I QR    +   R  I T T++ A  L  +L++              +G      
Sbjct  438  DLLGEINQR---VARDERTFITTLTKKMAEDLTDYLKE--------------MGVKVKYM  480

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMV  466
             + +   ++ E+I+  + G  ++L+  ++  EG+D+P  ++V      + G L NE  ++
Sbjct  481  HSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLI  540

Query  467  QARGRA  472
            Q  GRA
Sbjct  541  QTIGRA  546


>sp|P67425|UVRB_STAAN UvrABC system protein B OS=Staphylococcus 
aureus (strain N315) OX=158879 GN=uvrB PE=1 SV=1
Length=663

 Score = 38.9 bits (89),  Expect = 0.19, Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 6/76 (8%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGR-ARAD  475
            E+I+  + GT +++V  ++  EG+DIP  ++VV     + G L +  S++Q  GR AR D
Sbjct  490  EIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAARND  549

Query  476  QSVYAFVATEGSRELK  491
            +      A + +  +K
Sbjct  550  KGEVIMYADKMTDSMK  565


>sp|P67424|UVRB_STAAM UvrABC system protein B OS=Staphylococcus 
aureus (strain Mu50 / ATCC 700699) OX=158878 GN=uvrB PE=3 
SV=1
Length=663

 Score = 38.9 bits (89),  Expect = 0.19, Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 6/76 (8%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGR-ARAD  475
            E+I+  + GT +++V  ++  EG+DIP  ++VV     + G L +  S++Q  GR AR D
Sbjct  490  EIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAARND  549

Query  476  QSVYAFVATEGSRELK  491
            +      A + +  +K
Sbjct  550  KGEVIMYADKMTDSMK  565


>sp|A7ESL7|DBP10_SCLS1 ATP-dependent RNA helicase dbp10 OS=Sclerotinia 
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 
GN=dbp10 PE=3 SV=2
Length=920

 Score = 38.9 bits (89),  Expect = 0.19, Method: Compositional matrix adjust.
 Identities = 40/150 (27%), Positives = 67/150 (45%), Gaps = 15/150 (10%)

Query  337  ELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTV  396
            +L  + T  PEN  L   +   +++    + P      + + + HS +++   +     V
Sbjct  325  DLVKMPTGLPENA-LNATDNFSKKRKRGPDGPT----KKLKPTEHSTIIFAATKH---HV  376

Query  397  DIRAQLLIGAG----NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNV  452
            D  A LL  +G    ++  S   T R+ Q  ++ F+ G  N+LV T VA  G+DIP    
Sbjct  377  DYLASLLRMSGFAVSHAYGSLDQTARNIQ--VEDFRTGKSNILVVTDVAARGIDIPVLAN  434

Query  453  VVRYGLLTNEISMVQARGR-ARADQSVYAF  481
            V+ Y         V   GR ARA Q  +++
Sbjct  435  VINYDFPPQPKVFVHRVGRTARAGQRGWSY  464


>sp|Q8DYL6|UVRB_STRA5 UvrABC system protein B OS=Streptococcus 
agalactiae serotype V (strain ATCC BAA-611 / 2603 V/R) OX=208435 
GN=uvrB PE=3 SV=1
Length=663

 Score = 38.9 bits (89),  Expect = 0.19, Method: Compositional matrix adjust.
 Identities = 24/108 (22%), Positives = 50/108 (46%), Gaps = 7/108 (6%)

Query  370  GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD  429
            G I  RT +   + +  L ++      D   ++  G       + +   ++ E+I+  + 
Sbjct  441  GEINLRTEKGERTFITTLTKRMAEDLTDYLKEM--GVKVKYMHSDIKTLERTEIIRDLRL  498

Query  430  GTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            G  ++L+  ++  EG+D+P  ++V      + G L NE  ++Q  GRA
Sbjct  499  GVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRA  546


>sp|Q8E471|UVRB_STRA3 UvrABC system protein B OS=Streptococcus 
agalactiae serotype III (strain NEM316) OX=211110 GN=uvrB PE=3 
SV=1
Length=663

 Score = 38.9 bits (89),  Expect = 0.19, Method: Compositional matrix adjust.
 Identities = 24/108 (22%), Positives = 50/108 (46%), Gaps = 7/108 (6%)

Query  370  GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD  429
            G I  RT +   + +  L ++      D   ++  G       + +   ++ E+I+  + 
Sbjct  441  GEINLRTEKGERTFITTLTKRMAEDLTDYLKEM--GVKVKYMHSDIKTLERTEIIRDLRL  498

Query  430  GTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            G  ++L+  ++  EG+D+P  ++V      + G L NE  ++Q  GRA
Sbjct  499  GVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRA  546


>sp|Q0TUD0|UVRB_CLOP1 UvrABC system protein B OS=Clostridium perfringens 
(strain ATCC 13124 / DSM 756 / JCM 1290 / NCIMB 6125 
/ NCTC 8237 / Type A) OX=195103 GN=uvrB PE=3 SV=1
Length=659

 Score = 38.9 bits (89),  Expect = 0.20, Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 63/124 (51%), Gaps = 25/124 (20%)

Query  354  LEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQST  413
            +++ +QR F      R +I T T++ A  L  +L+       ++++A  +         +
Sbjct  437  IQRTVQRGF------RVLITTLTKRMAEDLTKYLKD------LNVKATYM--------HS  476

Query  414  HMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQA  468
             +   ++ ++I++ + G +++L+  ++  EGLDIP   +V      + G L +E S++Q 
Sbjct  477  DIDTLERMKIIRELRLGEVDVLIGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQT  536

Query  469  RGRA  472
             GRA
Sbjct  537  IGRA  540


>sp|B5XLX7|UVRB_STRPZ UvrABC system protein B OS=Streptococcus 
pyogenes serotype M49 (strain NZ131) OX=471876 GN=uvrB PE=3 
SV=1
Length=663

 Score = 38.9 bits (89),  Expect = 0.20, Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 22/126 (17%)

Query  352  EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ  411
            ++L +I QR    +   R  I T T++ A  L  +L++              +G      
Sbjct  438  DLLGEINQR---VARDERTFITTLTKKMAEDLTDYLKE--------------MGVKVKYM  480

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMV  466
             + +   ++ E+I+  + G  ++L+  ++  EG+D+P  ++V      + G L NE  ++
Sbjct  481  HSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLI  540

Query  467  QARGRA  472
            Q  GRA
Sbjct  541  QTIGRA  546


>sp|Q99ZA5|UVRB_STRP1 UvrABC system protein B OS=Streptococcus 
pyogenes serotype M1 OX=301447 GN=uvrB PE=3 SV=1
Length=663

 Score = 38.9 bits (89),  Expect = 0.20, Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 22/126 (17%)

Query  352  EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ  411
            ++L +I QR    +   R  I T T++ A  L  +L++              +G      
Sbjct  438  DLLGEINQR---VARDERTFITTLTKKMAEDLTDYLKE--------------MGVKVKYM  480

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMV  466
             + +   ++ E+I+  + G  ++L+  ++  EG+D+P  ++V      + G L NE  ++
Sbjct  481  HSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLI  540

Query  467  QARGRA  472
            Q  GRA
Sbjct  541  QTIGRA  546


>sp|Q6GIN3|UVRB_STAAR UvrABC system protein B OS=Staphylococcus 
aureus (strain MRSA252) OX=282458 GN=uvrB PE=3 SV=1
Length=663

 Score = 38.9 bits (89),  Expect = 0.20, Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 6/76 (8%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGR-ARAD  475
            E+I+  + GT +++V  ++  EG+DIP  ++VV     + G L +  S++Q  GR AR D
Sbjct  490  EIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAARND  549

Query  476  QSVYAFVATEGSRELK  491
            +      A + +  +K
Sbjct  550  KGEVIMYADKMTDSMK  565


>sp|Q5HHR0|UVRB_STAAC UvrABC system protein B OS=Staphylococcus 
aureus (strain COL) OX=93062 GN=uvrB PE=3 SV=1
Length=663

 Score = 38.9 bits (89),  Expect = 0.20, Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 6/76 (8%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGR-ARAD  475
            E+I+  + GT +++V  ++  EG+DIP  ++VV     + G L +  S++Q  GR AR D
Sbjct  490  EIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAARND  549

Query  476  QSVYAFVATEGSRELK  491
            +      A + +  +K
Sbjct  550  KGEVIMYADKMTDSMK  565


>sp|P45128|MFD_HAEIN Transcription-repair-coupling factor OS=Haemophilus 
influenzae (strain ATCC 51907 / DSM 11121 / KW20 
/ Rd) OX=71421 GN=mfd PE=3 SV=1
Length=1146

 Score = 38.9 bits (89),  Expect = 0.20, Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 50/100 (50%), Gaps = 16/100 (16%)

Query  400  AQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----  454
            A++++G G       M +R+ + V+  F     N+LV +++ E G+D+P  N ++     
Sbjct  838  ARVIVGHG------QMRERELERVMSDFYHQRYNVLVCSTIIETGIDVPTANTIIIERAD  891

Query  455  RYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRE  493
             +GL      + Q RGR  R+    YA++ T   + + ++
Sbjct  892  HFGL----AQLHQLRGRVGRSHHQAYAYLLTPPPKMMTKD  927


>sp|Q1DP69|DBP2_COCIM ATP-dependent RNA helicase DBP2 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=DBP2 PE=3 SV=2
Length=545

 Score = 38.5 bits (88),  Expect = 0.20, Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 72/154 (47%), Gaps = 23/154 (15%)

Query  351  LEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSS  410
            +  LE+I+  + S     + +IFT T++ A  +  +L+Q  G   + I        G+  
Sbjct  364  INHLERIMDDKKS-----KILIFTGTKRVADDITRFLRQD-GWPALSIH-------GDKQ  410

Query  411  QSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE---ISMVQ  467
            Q+    +RD   V+ +F+ G   ++VAT VA  G+D+     V+ Y    N    +  + 
Sbjct  411  QN----ERDW--VLNEFKTGKSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIG  464

Query  468  ARGRARADQSVYAFVATEGSRELKRELINEALET  501
              GRA A  +      T+ +++  R+L+N   E+
Sbjct  465  RTGRAGAKGTAITLFTTDNAKQ-ARDLVNILTES  497


>sp|Q4P9P3|DRS1_USTMA ATP-dependent RNA helicase DRS1 OS=Ustilago 
maydis (strain 521 / FGSC 9021) OX=237631 GN=DRS1 PE=3 SV=1
Length=932

 Score = 38.9 bits (89),  Expect = 0.20, Method: Compositional matrix adjust.
 Identities = 26/106 (25%), Positives = 46/106 (43%), Gaps = 18/106 (17%)

Query  353  MLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQS  412
            +L  +  R F+S      +IF R+++ AH L +                 L+G       
Sbjct  601  LLLSLCTRTFTSQT----MIFVRSKKLAHQLKIVFG--------------LLGLSAGELH  642

Query  413  THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL  458
              ++Q  + + +  F+DG  + L+AT +A  GLDI     V+ Y +
Sbjct  643  GDLSQEQRIDALTDFRDGKTDFLLATDLASRGLDIKGVQTVINYDM  688


>sp|Q46323|UVRB_CLOPE UvrABC system protein B OS=Clostridium perfringens 
(strain 13 / Type A) OX=195102 GN=uvrB PE=3 SV=2
Length=659

 Score = 38.5 bits (88),  Expect = 0.20, Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 63/124 (51%), Gaps = 25/124 (20%)

Query  354  LEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQST  413
            +++ +QR F      R +I T T++ A  L  +L+       ++++A  +         +
Sbjct  437  IQRTVQRGF------RVLITTLTKRMAEDLTKYLKD------LNVKATYM--------HS  476

Query  414  HMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQA  468
             +   ++ ++I++ + G +++L+  ++  EGLDIP   +V      + G L +E S++Q 
Sbjct  477  DIDTLERMKIIRELRLGEVDVLIGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQT  536

Query  469  RGRA  472
             GRA
Sbjct  537  IGRA  540


>sp|A5DK47|DBP6_PICGU ATP-dependent RNA helicase DBP6 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DBP6 PE=3 
SV=2
Length=631

 Score = 38.5 bits (88),  Expect = 0.20, Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 8/125 (6%)

Query  411  QSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARG  470
             ST+     + ++++ F + T+++LV T +   G+DI     V+ Y L  +    V   G
Sbjct  501  NSTNNAASTRAKILKDFANQTVHILVVTDLIARGIDIATITNVINYDLPNSSRDYVHRVG  560

Query  471  R-ARADQSVYAFVATEGSRELK------RELINEALETLMEQAV-AAVQKMDQAEYQAKI  522
            R ARA+Q   A+    G  E K      RE+  +     +E+     V + D+A+Y   +
Sbjct  561  RTARANQDGEAYTMCFGKGETKWFTQLVREVSRQTEVKDVEKGFRDLVSREDEAKYDTCL  620

Query  523  RDLQQ  527
             +LQ+
Sbjct  621  EELQR  625


>sp|Q8R8M4|UVRB_CALS4 UvrABC system protein B OS=Caldanaerobacter 
subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 
11007 / NBRC 100824 / MB4) OX=273068 GN=uvrB PE=3 SV=1
Length=662

 Score = 38.5 bits (88),  Expect = 0.20, Method: Compositional matrix adjust.
 Identities = 19/56 (34%), Positives = 32/56 (57%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + G  ++L+  ++  EGLDIP   +V      + G L +E S++Q  GRA
Sbjct  485  EIIRDLRLGKFDVLIGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGRA  540


>sp|Q3A8D0|UVRB_SYNC1 UvrABC system protein B OS=Syntrophotalea 
carbinolica (strain DSM 2380 / NBRC 103641 / GraBd1) OX=338963 
GN=uvrB PE=3 SV=1
Length=667

 Score = 38.5 bits (88),  Expect = 0.20, Method: Compositional matrix adjust.
 Identities = 18/59 (31%), Positives = 37/59 (63%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ +++++ ++G  ++LV  ++  EGLDIP  ++V      + G L +E S++Q  GRA
Sbjct  483  ERMQILRELREGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTCGRA  541


>sp|Q8NXM0|UVRB_STAAW UvrABC system protein B OS=Staphylococcus 
aureus (strain MW2) OX=196620 GN=uvrB PE=3 SV=1
Length=663

 Score = 38.5 bits (88),  Expect = 0.20, Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 6/76 (8%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGR-ARAD  475
            E+I+  + GT +++V  ++  EG+DIP  ++VV     + G L +  S++Q  GR AR D
Sbjct  490  EIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAARND  549

Query  476  QSVYAFVATEGSRELK  491
            +      A + +  +K
Sbjct  550  KGEVIMYADKMTDSMK  565


>sp|Q6GB72|UVRB_STAAS UvrABC system protein B OS=Staphylococcus 
aureus (strain MSSA476) OX=282459 GN=uvrB PE=3 SV=1
Length=663

 Score = 38.5 bits (88),  Expect = 0.20, Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 6/76 (8%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGR-ARAD  475
            E+I+  + GT +++V  ++  EG+DIP  ++VV     + G L +  S++Q  GR AR D
Sbjct  490  EIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAARND  549

Query  476  QSVYAFVATEGSRELK  491
            +      A + +  +K
Sbjct  550  KGEVIMYADKMTDSMK  565


>sp|P0CQ76|DBP2_CRYNJ ATP-dependent RNA helicase DBP2-A OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=DBP2 PE=3 SV=1
Length=540

 Score = 38.5 bits (88),  Expect = 0.20, Method: Compositional matrix adjust.
 Identities = 43/168 (26%), Positives = 68/168 (40%), Gaps = 37/168 (22%)

Query  331  FDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQ  390
            FD R   L+HL     EN K+                   +IF  T++ A  L  +L+  
Sbjct  339  FDKRSKLLSHLEKISQENGKV-------------------LIFVATKRVADDLTKFLRMD  379

Query  391  QGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHC  450
             G   + I        G+  Q+    +RD   V+ +F+ G   +++AT VA  GLD+   
Sbjct  380  -GWPALAIH-------GDKQQA----ERDW--VLAEFKSGRSPIMLATDVASRGLDVRDI  425

Query  451  NVVVRYGLLTN---EISMVQARGRARADQSVYAFVATEGSRELKRELI  495
              V+ Y    N    I  +   GRA    + Y +   + S+   REL+
Sbjct  426  GYVINYDFPNNCEDYIHRIGRTGRAGRKGTSYTYFTMDNSKA-ARELV  472


>sp|P0CQ77|DBP2_CRYNB ATP-dependent RNA helicase DBP2-A OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=DBP2 PE=3 SV=1
Length=540

 Score = 38.5 bits (88),  Expect = 0.20, Method: Compositional matrix adjust.
 Identities = 43/168 (26%), Positives = 68/168 (40%), Gaps = 37/168 (22%)

Query  331  FDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQ  390
            FD R   L+HL     EN K+                   +IF  T++ A  L  +L+  
Sbjct  339  FDKRSKLLSHLEKISQENGKV-------------------LIFVATKRVADDLTKFLRMD  379

Query  391  QGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHC  450
             G   + I        G+  Q+    +RD   V+ +F+ G   +++AT VA  GLD+   
Sbjct  380  -GWPALAIH-------GDKQQA----ERDW--VLAEFKSGRSPIMLATDVASRGLDVRDI  425

Query  451  NVVVRYGLLTN---EISMVQARGRARADQSVYAFVATEGSRELKRELI  495
              V+ Y    N    I  +   GRA    + Y +   + S+   REL+
Sbjct  426  GYVINYDFPNNCEDYIHRIGRTGRAGRKGTSYTYFTMDNSKA-ARELV  472


>sp|F4INA9|RECG_ARATH ATP-dependent DNA helicase homolog RECG, 
chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RECG PE=3 
SV=1
Length=973

 Score = 38.9 bits (89),  Expect = 0.21, Method: Compositional matrix adjust.
 Identities = 24/84 (29%), Positives = 42/84 (50%), Gaps = 10/84 (12%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQAR  469
            M   D++E + KF+ G   +L++T V E G+D+P  +++V     R+G+      + Q R
Sbjct  806  MKSDDKEEALNKFRSGETQILLSTQVIEIGVDVPDASMMVVMNAERFGI----AQLHQLR  861

Query  470  GR-ARADQSVYAFVATEGSRELKR  492
            GR  R  +     +    +  LKR
Sbjct  862  GRVGRGTRKSKCLLVGSSTNSLKR  885


>sp|Q83S42|UVRB_SHIFL UvrABC system protein B OS=Shigella flexneri 
OX=623 GN=uvrB PE=3 SV=1
Length=673

 Score = 38.5 bits (88),  Expect = 0.21, Method: Compositional matrix adjust.
 Identities = 25/90 (28%), Positives = 44/90 (49%), Gaps = 15/90 (17%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA-  472
            ++ E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA 
Sbjct  484  ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA  543

Query  473  ---------RADQSVYAFVATEGSRELKRE  493
                       D+S  +     G  E +RE
Sbjct  544  RNVNGKAILYGDRSTPSMAKAIGETERRRE  573


>sp|Q0T6I1|UVRB_SHIF8 UvrABC system protein B OS=Shigella flexneri 
serotype 5b (strain 8401) OX=373384 GN=uvrB PE=3 SV=1
Length=673

 Score = 38.5 bits (88),  Expect = 0.21, Method: Compositional matrix adjust.
 Identities = 25/90 (28%), Positives = 44/90 (49%), Gaps = 15/90 (17%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA-  472
            ++ E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA 
Sbjct  484  ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA  543

Query  473  ---------RADQSVYAFVATEGSRELKRE  493
                       D+S  +     G  E +RE
Sbjct  544  RNVNGKAILYGDRSTPSMAKAIGETERRRE  573


>sp|Q5K5B6|RH57_ORYSJ DEAD-box ATP-dependent RNA helicase 57 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os07g0647900 PE=2 
SV=2
Length=540

 Score = 38.5 bits (88),  Expect = 0.21, Method: Compositional matrix adjust.
 Identities = 31/143 (22%), Positives = 64/143 (45%), Gaps = 20/143 (14%)

Query  358  LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ  417
            L++ F+ S +P  +IF ++++ A  L       + L   D+RA ++           + +
Sbjct  376  LRQSFAESLNPPVLIFVQSKERAKELY------KELAFDDVRADVI--------HADLDE  421

Query  418  RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA----R  473
              +Q+ +   + G   +L+AT V   G+D    N V+ Y    +  + +   GR+    R
Sbjct  422  EQRQDAVDNLRAGKTWVLIATEVIARGMDFKGVNCVINYDFPESASAYIHRIGRSGRAGR  481

Query  474  ADQSVYAFVATEGSRELKRELIN  496
            + +++  F  TE  +   R + N
Sbjct  482  SGEAITFF--TEEDKPFLRNIAN  502


 Score = 37.7 bits (86),  Expect = 0.35, Method: Compositional matrix adjust.
 Identities = 37/144 (26%), Positives = 64/144 (44%), Gaps = 9/144 (6%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAY--VAKRHLETVDGAKVVVLVNRVHLVTQHG  64
            Q + I   L G+      PTG+GKT A  +  + K    + +G K V+L     L  Q  
Sbjct  173  QRQAIPILLSGRECFACAPTGSGKTLAFLFPILMKIKPGSKEGVKAVILCPTRELAAQTT  232

Query  65   EEFRRMLDGR-WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELT  123
             E +++  GR + +  ++ D+     F  +  C D+LI T   L  A+    ++  ++L+
Sbjct  233  RECKKLAKGRKFYIKLMTKDLSKSGNFKDM-HC-DILISTPLRLDHAV----QKRDLDLS  286

Query  124  VFSLIVVDECHHTHKDTVYNVIMS  147
                +V+DE     +     VI S
Sbjct  287  RVEYLVLDESDKLFELGFVEVIDS  310


>sp|A4WG30|RHLB_ENT38 ATP-dependent RNA helicase RhlB OS=Enterobacter 
sp. (strain 638) OX=399742 GN=rhlB PE=3 SV=1
Length=421

 Score = 38.5 bits (88),  Expect = 0.21, Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +++ ++      R IIF  T+     +  W      L     R  LL G    
Sbjct  243  KMRLLQTLIEEEWPD----RAIIFANTKHRCEDI--WGH----LAADGHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q+ +  +++ F  G L++LVAT VA  GL IP    V  Y L  +    V   
Sbjct  289  ----DVAQKKRLRILEDFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI  344

Query  470  GR-ARADQSVYAF  481
            GR  RA  S ++ 
Sbjct  345  GRTGRAGASGHSI  357


>sp|Q7UZL3|UVRB_PROMP UvrABC system protein B OS=Prochlorococcus 
marinus subsp. pastoris (strain CCMP1986 / NIES-2087 / MED4) 
OX=59919 GN=uvrB PE=3 SV=1
Length=679

 Score = 38.5 bits (88),  Expect = 0.21, Method: Compositional matrix adjust.
 Identities = 25/79 (32%), Positives = 41/79 (52%), Gaps = 6/79 (8%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGR-ARAD  475
            E+IQ  + G  ++LV  ++  EGLD+P  ++V      + G L  E S++Q  GR AR  
Sbjct  485  EIIQDLRLGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAARHV  544

Query  476  QSVYAFVATEGSRELKREL  494
            + V    A   +  +KR +
Sbjct  545  EGVALLYADNFTESMKRAI  563


>sp|Q9UJV9|DDX41_HUMAN Probable ATP-dependent RNA helicase DDX41 
OS=Homo sapiens OX=9606 GN=DDX41 PE=1 SV=2
Length=622

 Score = 38.5 bits (88),  Expect = 0.21, Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 7/83 (8%)

Query  396  VDIRAQLLIGAGNSSQSTHMTQRDQQE---VIQKFQDGTLNLLVATSVAEEGLDIPHCNV  452
            VD   + L+  G  + + H   +DQ+E    I+ F++G  ++LVAT VA +GLD P    
Sbjct  445  VDAIHEYLLLKGVEAVAIH-GGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQH  503

Query  453  VVRYGL---LTNEISMVQARGRA  472
            V+ Y +   + N +  +   GR+
Sbjct  504  VINYDMPEEIENYVHRIGRTGRS  526


>sp|A2RIP3|UVRB_LACLM UvrABC system protein B OS=Lactococcus lactis 
subsp. cremoris (strain MG1363) OX=416870 GN=uvrB PE=3 
SV=1
Length=692

 Score = 38.5 bits (88),  Expect = 0.21, Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 61/126 (48%), Gaps = 19/126 (15%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRAR  473
            ++ E+I+  + G  ++LV  ++  EG+D+P  ++V      + G L NE  ++Q  GRA 
Sbjct  489  ERTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAA  548

Query  474  ADQSVYAFVATEGSREL------KRELINEALETLMEQAVAAVQK-----MDQAEYQAKI  522
             +   +  + ++ ++ L       +E+++    T  E     + +     MD+    A+ 
Sbjct  549  RNSEGHVILYSDMAKALDENDPADKEILDSGYYTEYEGKKYKITRSMKHAMDET---ARR  605

Query  523  RDLQQA  528
            RD+Q A
Sbjct  606  RDIQMA  611


>sp|Q61496|DDX4_MOUSE ATP-dependent RNA helicase DDX4 OS=Mus musculus 
OX=10090 GN=Ddx4 PE=1 SV=2
Length=702

 Score = 38.5 bits (88),  Expect = 0.22, Method: Compositional matrix adjust.
 Identities = 31/130 (24%), Positives = 57/130 (44%), Gaps = 17/130 (13%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            R ++F  T++ A  +  +L Q++ + T  I                  QR++++ +  F+
Sbjct  515  RTMVFVETKKKADFIATFLCQEK-ISTTSIHGD-------------REQREREQALGDFR  560

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGRARADQSVYAFVATE  485
             G   +LVATSVA  GLDI +   V+ + L   +   +  +   GR        +F  T+
Sbjct  561  CGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDTD  620

Query  486  GSRELKRELI  495
                L + L+
Sbjct  621  SDNHLAQPLV  630


>sp|B9DSH1|UVRB_STRU0 UvrABC system protein B OS=Streptococcus 
uberis (strain ATCC BAA-854 / 0140J) OX=218495 GN=uvrB PE=3 
SV=1
Length=663

 Score = 38.5 bits (88),  Expect = 0.22, Method: Compositional matrix adjust.
 Identities = 25/109 (23%), Positives = 50/109 (46%), Gaps = 19/109 (17%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            R  I T T++ A  L  +L++              +G       + +   ++ E+I+  +
Sbjct  452  RTFITTLTKKMAEDLTDYLKE--------------MGVKVKYMHSDIKTLERTEIIRDLR  497

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
             G  ++L+  ++  EG+D+P  ++V      + G L NE  ++Q  GRA
Sbjct  498  LGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRA  546


>sp|Q8CGS6|DPOLQ_MOUSE DNA polymerase theta OS=Mus musculus OX=10090 
GN=Polq PE=1 SV=2
Length=2544

 Score = 38.9 bits (89),  Expect = 0.22, Method: Compositional matrix adjust.
 Identities = 38/154 (25%), Positives = 70/154 (45%), Gaps = 17/154 (11%)

Query  4    RSYQWE----VIMPALEGKNIIIWLPTGAGKTRAAA-YVAKRHLETVDGAKVVVLVNRVH  58
            + ++W+    ++   LEGKN++   PT AGKT  A   + KR LET    K + ++  V 
Sbjct  90   KMFEWQAECLLLGHVLEGKNLVYSAPTSAGKTLVAELLILKRVLETR--KKALFILPFVS  147

Query  59   LVTQHGEEFRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE  117
            +  +     + +  +    V    G   P   F  L    D+ +CT E     +    EE
Sbjct  148  VAKEKKCYLQSLFQEVGLKVDGYMGSTSPTGQFSSL----DIAVCTIERANGLVNRLIEE  203

Query  118  EHVELTVFSLIVVDECH---HTHKDTVYNVIMSQ  148
              ++L    ++VVDE H    +H+  +  +++++
Sbjct  204  NKMDL--LGMVVVDELHMLGDSHRGYLLELLLTK  235


>sp|P44922|RHLB_HAEIN ATP-dependent RNA helicase RhlB OS=Haemophilus 
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) 
OX=71421 GN=rhlB PE=3 SV=2
Length=415

 Score = 38.5 bits (88),  Expect = 0.22, Method: Compositional matrix adjust.
 Identities = 23/64 (36%), Positives = 34/64 (53%), Gaps = 1/64 (2%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR  473
            + Q+ +  ++++F DG L++LVAT VA  GL I     V  Y L  +    V   GR  R
Sbjct  289  VAQKKRLSLLKQFTDGDLDILVATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGR  348

Query  474  ADQS  477
            A +S
Sbjct  349  AGES  352


>sp|Q53RK8|RH21_ORYSJ DEAD-box ATP-dependent RNA helicase 21 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os03g0708600 PE=2 
SV=1
Length=736

 Score = 38.5 bits (88),  Expect = 0.22, Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 22/117 (19%)

Query  347  ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA  406
            E+ K+  L+KIL       + P  I+F  T++SA                D RA+ L  A
Sbjct  562  ESEKMSRLQKILT---DLGDKP-AIVFCNTKKSA----------------DARAKDLDKA  601

Query  407  GNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN  461
            G    + H   +Q  ++  +  F++    +LVAT VA  G+DIP    V+ Y + ++
Sbjct  602  GFRVTTLHGGKSQEQRETSLDGFRNRRFTVLVATDVAGRGIDIPDVAHVINYEMPSS  658


>sp|A6QXC1|DBP3_AJECN ATP-dependent RNA helicase DBP3 OS=Ajellomyces 
capsulatus (strain NAm1 / WU24) OX=2059318 GN=DBP3 PE=3 
SV=1
Length=487

 Score = 38.5 bits (88),  Expect = 0.22, Method: Compositional matrix adjust.
 Identities = 29/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (7%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL-LTNE--ISMVQARGR  471
            M Q ++   +  F+ G++ +LVAT VA  GLDIP   +V+     LT E  +  +   GR
Sbjct  356  MNQTERFNSLDAFKSGSVPVLVATDVAARGLDIPAVKLVLNVTFPLTVEDYVHRIGRTGR  415

Query  472  ARADQ-SVYAFVATEGSRELKRELIN  496
            A +D  ++  F  TE  + L   L+N
Sbjct  416  AGSDGLAITMF--TENDKALSGGLVN  439


>sp|Q8CPZ0|UVRB_STAES UvrABC system protein B OS=Staphylococcus 
epidermidis (strain ATCC 12228 / FDA PCI 1200) OX=176280 GN=uvrB 
PE=3 SV=1
Length=661

 Score = 38.5 bits (88),  Expect = 0.22, Method: Compositional matrix adjust.
 Identities = 19/56 (34%), Positives = 34/56 (61%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + GT + +V  ++  EG+DIP  ++VV     + G L ++ S++Q  GRA
Sbjct  488  EIIRDLRMGTYDAIVGINLLREGIDIPEVSLVVILDADKEGFLRSDRSLIQTIGRA  543


>sp|Q6BZ77|DBP3_DEBHA ATP-dependent RNA helicase DBP3 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / 
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DBP3 PE=3 SV=1
Length=527

 Score = 38.5 bits (88),  Expect = 0.22, Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 41/84 (49%), Gaps = 2/84 (2%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR  473
            ++Q+ +   +  F+ G   LL+AT VA  GLDIP+  VV+           V   GR  R
Sbjct  397  LSQQQRTSALGAFKAGKTTLLLATDVAARGLDIPNVKVVINLTFPLTVEDYVHRIGRTGR  456

Query  474  ADQSVYAF-VATEGSRELKRELIN  496
            A Q+  A  + TE  + L   L+N
Sbjct  457  AGQTGIAHTLFTEHEKHLSGALMN  480


>sp|Q55D61|IF4A_DICDI Eukaryotic initiation factor 4A OS=Dictyostelium 
discoideum OX=44689 GN=tifA PE=3 SV=1
Length=405

 Score = 38.1 bits (87),  Expect = 0.22, Method: Compositional matrix adjust.
 Identities = 16/64 (25%), Positives = 36/64 (56%), Gaps = 0/64 (0%)

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
            +S    M Q++++E+I+ F+ G   +L+ T +   G+D+   ++V+ Y L  +  + +  
Sbjct  299  ASMHGDMVQKEREEIIKSFRSGENRVLITTDILARGIDVQQVSLVINYDLPIDRENYIHR  358

Query  469  RGRA  472
             GR+
Sbjct  359  IGRS  362


>sp|A3LX02|SPB4_PICST ATP-dependent rRNA helicase SPB4 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=SPB4 PE=3 SV=2
Length=617

 Score = 38.5 bits (88),  Expect = 0.22, Method: Compositional matrix adjust.
 Identities = 33/108 (31%), Positives = 51/108 (47%), Gaps = 7/108 (6%)

Query  423  VIQKFQDGTLNL----LVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQS  477
             +Q F DG + L    L+ T VA  G+DIP  ++V++    T+    +   GR  RA++ 
Sbjct  324  TLQSFTDGDVALNKHILMTTDVAARGIDIPDVDLVIQLDPPTDPDVFLHRCGRTGRANKV  383

Query  478  VYAFVA-TEGSRELKRELINEALETLM-EQAVAAVQKMDQAEYQAKIR  523
              A V   +GSREL      E     M E     + + D  ++Q K+R
Sbjct  384  GRAIVMLNDGSRELDYVDFMEVKGVAMQEMPTPDLNQSDHQQFQDKLR  431


>sp|B0SLS0|UVRB_LEPBP UvrABC system protein B OS=Leptospira biflexa 
serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) OX=456481 
GN=uvrB PE=3 SV=1
Length=664

 Score = 38.5 bits (88),  Expect = 0.22, Method: Compositional matrix adjust.
 Identities = 20/59 (34%), Positives = 33/59 (56%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+I+  + G  + +V  ++  EGLDIP  ++V      + G L N  S+VQ  GRA
Sbjct  482  ERTEIIRDLRKGVYDCIVGINLLREGLDIPEVSLVAILDADKEGFLRNYKSLVQTIGRA  540


>sp|B0SDE2|UVRB_LEPBA UvrABC system protein B OS=Leptospira biflexa 
serovar Patoc (strain Patoc 1 / Ames) OX=355278 GN=uvrB 
PE=3 SV=1
Length=664

 Score = 38.5 bits (88),  Expect = 0.22, Method: Compositional matrix adjust.
 Identities = 20/59 (34%), Positives = 33/59 (56%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+I+  + G  + +V  ++  EGLDIP  ++V      + G L N  S+VQ  GRA
Sbjct  482  ERTEIIRDLRKGVYDCIVGINLLREGLDIPEVSLVAILDADKEGFLRNYKSLVQTIGRA  540


>sp|P96614|CSHA_BACSU DEAD-box ATP-dependent RNA helicase CshA 
OS=Bacillus subtilis (strain 168) OX=224308 GN=cshA PE=1 SV=2
Length=494

 Score = 38.5 bits (88),  Expect = 0.22, Method: Compositional matrix adjust.
 Identities = 40/140 (29%), Positives = 63/140 (45%), Gaps = 25/140 (18%)

Query  347  ENPKLEMLEKILQRQFSSSNSPR-GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
            E  K + L ++L  Q     SP   I+F RT++                 VD  A+ L  
Sbjct  225  ERKKFDTLTRLLDIQ-----SPELAIVFGRTKRR----------------VDELAEALNL  263

Query  406  AGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI  463
             G +++  H  +TQ  +   ++KF++G + +LVAT VA  GLDI     V  + +  +  
Sbjct  264  RGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPE  323

Query  464  SMVQARGR-ARADQSVYAFV  482
            S V   GR  RA ++  A  
Sbjct  324  SYVHRIGRTGRAGKTGMAMT  343


>sp|Q82WA9|UVRB_NITEU UvrABC system protein B OS=Nitrosomonas 
europaea (strain ATCC 19718 / CIP 103999 / KCTC 2705 / NBRC 
14298) OX=228410 GN=uvrB PE=3 SV=1
Length=695

 Score = 38.5 bits (88),  Expect = 0.22, Method: Compositional matrix adjust.
 Identities = 20/56 (36%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + G  ++LV  ++  EGLDIP  ++V      + G L +E S++Q  GRA
Sbjct  491  EIIRDLRLGKFDVLVGINLLREGLDIPEVSLVGILDADKEGFLRSERSLIQTMGRA  546


>sp|Q5HQX0|UVRB_STAEQ UvrABC system protein B OS=Staphylococcus 
epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / 
CCUG 31568 / BM 3577 / RP62A) OX=176279 GN=uvrB PE=3 SV=1
Length=661

 Score = 38.5 bits (88),  Expect = 0.23, Method: Compositional matrix adjust.
 Identities = 19/56 (34%), Positives = 34/56 (61%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + GT + +V  ++  EG+DIP  ++VV     + G L ++ S++Q  GRA
Sbjct  488  EIIRDLRMGTYDAIVGINLLREGIDIPEVSLVVILDADKEGFLRSDRSLIQTIGRA  543


>sp|B5YY28|RHLB_ECO5E ATP-dependent RNA helicase RhlB OS=Escherichia 
coli O157:H7 (strain EC4115 / EHEC) OX=444450 GN=rhlB 
PE=3 SV=1
Length=421

 Score = 38.1 bits (87),  Expect = 0.23, Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +++ ++      R IIF  T+     +  W      L     R  LL G    
Sbjct  243  KMRLLQTLIEEEWPD----RAIIFANTKHRCEEI--WGH----LAADGHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q+ +  ++ +F  G L++LVAT VA  GL IP    V  Y L  +    V   
Sbjct  289  ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI  344

Query  470  GR-ARADQSVYAF  481
            GR  RA  S ++ 
Sbjct  345  GRTGRAGASGHSI  357


>sp|Q1J665|UVRB_STRPF UvrABC system protein B OS=Streptococcus 
pyogenes serotype M4 (strain MGAS10750) OX=370554 GN=uvrB PE=3 
SV=1
Length=663

 Score = 38.5 bits (88),  Expect = 0.23, Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 22/126 (17%)

Query  352  EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ  411
            ++L +I QR    +   R  I T T++ A  L  +L++              +G      
Sbjct  438  DLLGEINQR---VARDERTFITTLTKKMAEDLTDYLKE--------------MGVKVKYM  480

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMV  466
             + +   ++ E+I+  + G  ++L+  ++  EG+D+P  ++V      + G L NE  ++
Sbjct  481  HSDIKTLERTEIIRDLRLGIFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLI  540

Query  467  QARGRA  472
            Q  GRA
Sbjct  541  QTIGRA  546


>sp|Q0E3X4|RH35A_ORYSJ DEAD-box ATP-dependent RNA helicase 35A 
OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0150100 PE=2 
SV=2
Length=627

 Score = 38.5 bits (88),  Expect = 0.23, Method: Compositional matrix adjust.
 Identities = 24/78 (31%), Positives = 40/78 (51%), Gaps = 2/78 (3%)

Query  396  VDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV  453
            VD   + L+  G  + + H    Q +++  I+ F++G  ++LVAT VA +GLD P    V
Sbjct  446  VDYIHEYLLLKGVEAVAIHGGKDQEERENAIEFFKNGKKDVLVATDVASKGLDFPDIQHV  505

Query  454  VRYGLLTNEISMVQARGR  471
            + Y +     + V   GR
Sbjct  506  INYDMPAEIENYVHRIGR  523


>sp|A3CNJ9|UVRB_STRSV UvrABC system protein B OS=Streptococcus 
sanguinis (strain SK36) OX=388919 GN=uvrB PE=3 SV=1
Length=662

 Score = 38.5 bits (88),  Expect = 0.23, Method: Compositional matrix adjust.
 Identities = 24/108 (22%), Positives = 50/108 (46%), Gaps = 7/108 (6%)

Query  370  GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD  429
            G I  R  ++  + +  L ++      D   ++  G       + +   ++ E+I+  + 
Sbjct  441  GEINARVEKNERTFITTLTKKMAEDLTDYFKEM--GVKVKYMHSDIKTLERTEIIRDLRL  498

Query  430  GTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            G  ++LV  ++  EG+D+P  ++V      + G L NE  ++Q  GRA
Sbjct  499  GVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRA  546


>sp|P0CQ93|DRS1_CRYNB ATP-dependent RNA helicase DRS1 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=DRS1 PE=3 SV=1
Length=808

 Score = 38.5 bits (88),  Expect = 0.23, Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 85/191 (45%), Gaps = 27/191 (14%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            IIF R++  AH + +                 L G   +    ++TQ  + + +  F+ G
Sbjct  473  IIFFRSKALAHQMRIVFG--------------LFGLKAAELHGNLTQEQRLQALNDFKAG  518

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRY---GLLTNEISMVQARGRA-RADQSVYAFVATEG  486
            T++ L+AT +A  GLDI     V+ Y   G L      V    RA R  +SV   +  E 
Sbjct  519  TVDYLLATDLASRGLDIKGVETVINYDMPGQLAQYTHRVGRTARAGRKGRSVS--LVGEA  576

Query  487  SRELKRELINEAL------ETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR  540
             R++ +  I +A         +  +AV A+++  + E++  I+++ +    ++  + A  
Sbjct  577  DRKMLKAAIKQAEADQVRHRIIPSEAVTAMKEKLE-EFKDDIQEILKEEKEEKLLRQADM  635

Query  541  ENQRQQFPVEH  551
            E ++ Q  VEH
Sbjct  636  EIKKGQNMVEH  646


>sp|P53327|ASCC3_YEAST RQC trigger complex helicase SLH1 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 
GN=SLH1 PE=1 SV=2
Length=1967

 Score = 38.5 bits (88),  Expect = 0.24, Method: Compositional matrix adjust.
 Identities = 40/163 (25%), Positives = 72/163 (44%), Gaps = 22/163 (13%)

Query  17    GKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWT  76
              +N  +  PTG+GKT  A        +T  G K+V +     LV +      R+ D R  
Sbjct  1155  NENAFVGSPTGSGKTIVAELAIWHAFKTFPGKKIVYIAPMKALVRE------RVDDWRKK  1208

Query  77    VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVE--------LTVFSLI  128
             +T ++GD         L    D+   T     + +T+PE+ + +         +   SLI
Sbjct  1209  ITPVTGDKVVELTGDSLPDPKDVHDAT-----IVITTPEKFDGISRNWQTRKFVQDVSLI  1263

Query  129   VVDECHHTHKD--TVYNVIMSQYLELKLQRAQPLPQVLGLTAS  169
             ++DE H    D   +  +I+S+   +  Q  QP+ ++LG++ +
Sbjct  1264  IMDEIHLLASDRGPILEMIVSRMNYISSQTKQPV-RLLGMSTA  1305


 Score = 36.2 bits (82),  Expect = 1.2, Method: Compositional matrix adjust.
 Identities = 41/174 (24%), Positives = 83/174 (48%), Gaps = 31/174 (18%)

Query  17   GKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRW-  75
             +N++I  PTGAGKT  A       L  ++  K   +VN  + +    ++F+ +      
Sbjct  303  NENMLICAPTGAGKTDIAL------LTIINTIKQFSVVNGENEIDIQYDDFKVIYVAPLK  356

Query  76   -----TVTTLSGDMGPRAGFGHLAR--CHDLLICTAELL--QMALTSPEEEEHVE-----  121
                  V   S  + P   F    R    D+ +  AE+L  Q+ +T+PE+ + V      
Sbjct  357  ALAAEIVDKFSKKLAP---FNIQVRELTGDMQLTKAEILATQVIVTTPEKWDVVTRKANG  413

Query  122  ----LTVFSLIVVDECHHTHKD--TVYNVIMSQYLELKLQRAQPLPQVLGLTAS  169
                ++   L+++DE H  H+D  +V   ++++ L  +++ +Q + +++GL+A+
Sbjct  414  DNDLVSKVKLLIIDEVHLLHEDRGSVIETLVARTLR-QVESSQSMIRIIGLSAT  466


>sp|Q5KVB5|UVRB_GEOKA UvrABC system protein B OS=Geobacillus kaustophilus 
(strain HTA426) OX=235909 GN=uvrB PE=3 SV=1
Length=658

 Score = 38.5 bits (88),  Expect = 0.24, Method: Compositional matrix adjust.
 Identities = 20/56 (36%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + G  ++LV  ++  EGLDIP  ++V      + G L +E S++Q  GRA
Sbjct  486  EIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA  541


>sp|A5UI36|RHLB_HAEIG ATP-dependent RNA helicase RhlB OS=Haemophilus 
influenzae (strain PittGG) OX=374931 GN=rhlB PE=3 SV=1
Length=415

 Score = 38.1 bits (87),  Expect = 0.24, Method: Compositional matrix adjust.
 Identities = 23/64 (36%), Positives = 34/64 (53%), Gaps = 1/64 (2%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR  473
            + Q+ +  ++++F DG L++LVAT VA  GL I     V  Y L  +    V   GR  R
Sbjct  289  VAQKKRLSLLKQFTDGDLDILVATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGR  348

Query  474  ADQS  477
            A +S
Sbjct  349  AGES  352


>sp|Q91VN6|DDX41_MOUSE Probable ATP-dependent RNA helicase DDX41 
OS=Mus musculus OX=10090 GN=Ddx41 PE=1 SV=2
Length=622

 Score = 38.5 bits (88),  Expect = 0.24, Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 7/83 (8%)

Query  396  VDIRAQLLIGAGNSSQSTHMTQRDQQE---VIQKFQDGTLNLLVATSVAEEGLDIPHCNV  452
            VD   + L+  G  + + H   +DQ+E    I+ F++G  ++LVAT VA +GLD P    
Sbjct  445  VDAIHEYLLLKGVEAVAIH-GGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQH  503

Query  453  VVRYGL---LTNEISMVQARGRA  472
            V+ Y +   + N +  +   GR+
Sbjct  504  VINYDMPEEIENYVHRIGRTGRS  526


>sp|P56981|UVRB_BACCA UvrABC system protein B OS=Bacillus caldotenax 
OX=1395 GN=uvrB PE=1 SV=2
Length=658

 Score = 38.5 bits (88),  Expect = 0.24, Method: Compositional matrix adjust.
 Identities = 20/56 (36%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + G  ++LV  ++  EGLDIP  ++V      + G L +E S++Q  GRA
Sbjct  486  EIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA  541


>sp|P37954|UVRB_BACSU UvrABC system protein B OS=Bacillus subtilis 
(strain 168) OX=224308 GN=uvrB PE=1 SV=2
Length=661

 Score = 38.5 bits (88),  Expect = 0.24, Method: Compositional matrix adjust.
 Identities = 20/56 (36%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + G  ++LV  ++  EGLDIP  ++V      + G L +E S++Q  GRA
Sbjct  486  EIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA  541


>sp|Q6BL34|DBP10_DEBHA ATP-dependent RNA helicase DBP10 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 
/ JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DBP10 PE=3 
SV=2
Length=932

 Score = 38.5 bits (88),  Expect = 0.24, Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 6/106 (6%)

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT--QRDQQEVIQKFQDGTLNLLV  436
            S HS ++++  +  ++ V     LL  AG      + T  Q  +++ + +F+ G  +LLV
Sbjct  389  SKHSTIIFVPTKHHVEYV---TTLLKDAGYLVSYIYGTLDQHARKQQLYQFRIGMTSLLV  445

Query  437  ATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF  481
             T VA  G+DIP    VV Y L  +    +   GR ARA  S +A+
Sbjct  446  VTDVAARGIDIPILANVVNYTLPGSSKIFIHRVGRTARAGNSGWAY  491


>sp|A5UDI1|RHLB_HAEIE ATP-dependent RNA helicase RhlB OS=Haemophilus 
influenzae (strain PittEE) OX=374930 GN=rhlB PE=3 SV=1
Length=415

 Score = 38.1 bits (87),  Expect = 0.24, Method: Compositional matrix adjust.
 Identities = 23/64 (36%), Positives = 34/64 (53%), Gaps = 1/64 (2%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR  473
            + Q+ +  ++++F DG L++LVAT VA  GL I     V  Y L  +    V   GR  R
Sbjct  289  VAQKKRLSLLKQFTDGDLDILVATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGR  348

Query  474  ADQS  477
            A +S
Sbjct  349  AGES  352


>sp|Q5JK84|RH15_ORYSJ DEAD-box ATP-dependent RNA helicase 15 OS=Oryza 
sativa subsp. japonica OX=39947 GN=AIP2 PE=1 SV=1
Length=432

 Score = 38.1 bits (87),  Expect = 0.24, Method: Compositional matrix adjust.
 Identities = 19/58 (33%), Positives = 32/58 (55%), Gaps = 0/58 (0%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA  472
            MTQ ++    + F++G   +LVAT +   G+DI   N+V+ Y +  +  S +   GRA
Sbjct  327  MTQEERLTRYKNFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADSYLHRVGRA  384


>sp|B1LLV3|RHLB_ECOSM ATP-dependent RNA helicase RhlB OS=Escherichia 
coli (strain SMS-3-5 / SECEC) OX=439855 GN=rhlB PE=3 
SV=1
Length=421

 Score = 38.1 bits (87),  Expect = 0.24, Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +++ ++      R IIF  T+     +  W      L     R  LL G    
Sbjct  243  KMRLLQTLIEEEWPD----RAIIFANTKHRCEEI--WGH----LAADGHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q+ +  ++ +F  G L++LVAT VA  GL IP    V  Y L  +    V   
Sbjct  289  ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI  344

Query  470  GR-ARADQSVYAF  481
            GR  RA  S ++ 
Sbjct  345  GRTGRAGASGHSI  357


>sp|B2A713|UVRB_NATTJ UvrABC system protein B OS=Natranaerobius 
thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) 
OX=457570 GN=uvrB PE=3 SV=1
Length=658

 Score = 38.5 bits (88),  Expect = 0.24, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  482  ERMEIIRDLRLGKFDVLVGINLLREGLDLPEVSLVAILDADKEGYLRDERSLIQTMGRA  540


>sp|P0CQ92|DRS1_CRYNJ ATP-dependent RNA helicase DRS1 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=DRS1 PE=3 SV=2
Length=793

 Score = 38.5 bits (88),  Expect = 0.24, Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 85/191 (45%), Gaps = 27/191 (14%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            IIF R++  AH + +                 L G   +    ++TQ  + + +  F+ G
Sbjct  458  IIFFRSKALAHQMRIVFG--------------LFGLKAAELHGNLTQEQRLQALNDFKAG  503

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRY---GLLTNEISMVQARGRA-RADQSVYAFVATEG  486
            T++ L+AT +A  GLDI     V+ Y   G L      V    RA R  +SV   +  E 
Sbjct  504  TVDYLLATDLASRGLDIKGVETVINYDMPGQLAQYTHRVGRTARAGRKGRSVS--LVGEA  561

Query  487  SRELKRELINEAL------ETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR  540
             R++ +  I +A         +  +AV A+++  + E++  I+++ +    ++  + A  
Sbjct  562  DRKMLKAAIKQAEADQVRHRIIPSEAVTAMKEKLE-EFKDDIQEILKEEKEEKLLRQADM  620

Query  541  ENQRQQFPVEH  551
            E ++ Q  VEH
Sbjct  621  EIKKGQNMVEH  631


>sp|Q0JM17|RH56_ORYSJ DEAD-box ATP-dependent RNA helicase 56 OS=Oryza 
sativa subsp. japonica OX=39947 GN=AIP1 PE=1 SV=2
Length=432

 Score = 38.1 bits (87),  Expect = 0.24, Method: Compositional matrix adjust.
 Identities = 19/58 (33%), Positives = 32/58 (55%), Gaps = 0/58 (0%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA  472
            MTQ ++    + F++G   +LVAT +   G+DI   N+V+ Y +  +  S +   GRA
Sbjct  327  MTQEERLTRYKNFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADSYLHRVGRA  384


>sp|Q6FQU5|DHH1_CANGA ATP-dependent RNA helicase DHH1 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DHH1 PE=3 SV=1
Length=507

 Score = 38.1 bits (87),  Expect = 0.24, Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 11/111 (10%)

Query  373  FTRTRQSAH---SLLLWLQQQQGL------QTVDIRAQLLIGAGNSSQSTH--MTQRDQQ  421
            F   RQ  H   +L   LQ  Q +        V++ A+ +   G S   +H  M Q+D+ 
Sbjct  249  FVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQDRN  308

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA  472
            +V   F+ G +  LV + +   G+DI   NVV+ +       + +   GR+
Sbjct  309  KVFHDFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRS  359


>sp|Q4L4I5|UVRB_STAHJ UvrABC system protein B OS=Staphylococcus 
haemolyticus (strain JCSC1435) OX=279808 GN=uvrB PE=3 SV=1
Length=661

 Score = 38.5 bits (88),  Expect = 0.25, Method: Compositional matrix adjust.
 Identities = 19/56 (34%), Positives = 34/56 (61%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + GT +++V  ++  EG+DIP  ++VV     + G L +  S++Q  GRA
Sbjct  488  EIIRDLRMGTYDVVVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRA  543


>sp|Q9V0A9|HELS_PYRAB ATP-dependent DNA helicase Hel308 OS=Pyrococcus 
abyssi (strain GE5 / Orsay) OX=272844 GN=hel308 PE=3 
SV=1
Length=715

 Score = 38.5 bits (88),  Expect = 0.25, Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 74/162 (46%), Gaps = 21/162 (13%)

Query  15   LEGKNIIIWLPTGAGKTRAAAY-VAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDG  73
            LEG+N+++ +PT +GKT  A   +A + LE  +G K V +V    L  +   EF+     
Sbjct  37   LEGENLLVAIPTASGKTLIAEIAIANKLLE--EGGKAVYIVPLKALAEEKFREFKDWERL  94

Query  74   RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC  133
               V   +GD   +  +  L + +D++I TAE     L          +    ++V+DE 
Sbjct  95   GLKVAMATGDYDSKDEW--LGK-YDIIIATAEKFDSLLRHGSS----WIRDVKMLVIDEI  147

Query  134  H---HTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGT  172
            H      +      I++Q     L RA    Q++GL+A+ G 
Sbjct  148  HLIGSRDRGATLEFIITQM----LGRA----QIIGLSATIGN  181


>sp|P10125|UVRB_MICLC UvrABC system protein B OS=Micrococcus luteus 
(strain ATCC 4698 / DSM 20030 / JCM 1464 / CCM 169 / CCUG 
5858 / IAM 1056 / NBRC 3333 / NCIMB 9278 / NCTC 2665 / VKM 
Ac-2230) OX=465515 GN=uvrB PE=3 SV=3
Length=709

 Score = 38.5 bits (88),  Expect = 0.25, Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 34/56 (61%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E++++ + GT ++LV  ++  EGLD+P  ++V      + G L +  S++Q  GRA
Sbjct  494  ELLRELRKGTFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRA  549


>sp|Q329V8|RHLB_SHIDS ATP-dependent RNA helicase RhlB OS=Shigella 
dysenteriae serotype 1 (strain Sd197) OX=300267 GN=rhlB 
PE=3 SV=1
Length=421

 Score = 38.1 bits (87),  Expect = 0.25, Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +++ ++      R IIF  T+     +  W      L     R  LL G    
Sbjct  243  KMRLLQTLIEEEWPD----RAIIFANTKHRCEEI--WGH----LAADGHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q+ +  ++ +F  G L++LVAT VA  GL IP    V  Y L  +    V   
Sbjct  289  ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI  344

Query  470  GR-ARADQSVYAF  481
            GR  RA  S ++ 
Sbjct  345  GRTGRAGASGHSI  357


>sp|Q92H58|MFD_RICCN Transcription-repair-coupling factor OS=Rickettsia 
conorii (strain ATCC VR-613 / Malish 7) OX=272944 
GN=mfd PE=3 SV=1
Length=1122

 Score = 38.5 bits (88),  Expect = 0.25, Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 2/78 (3%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS-MVQARGR-A  472
            MT     EV+ +F  G  ++LV+T++ E G+DI   N ++ +      +S + Q RGR  
Sbjct  827  MTPSKIDEVMSEFYAGKFDILVSTTIIESGIDIAEANTMIIHNADMLGLSQLYQLRGRIG  886

Query  473  RADQSVYAFVATEGSREL  490
            R     YA++     +++
Sbjct  887  RGKMRGYAYLTVASHKKM  904


>sp|P0A2P0|RHLB_SALTY ATP-dependent RNA helicase RhlB OS=Salmonella 
typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 
GN=rhlB PE=3 SV=2
Length=421

 Score = 38.1 bits (87),  Expect = 0.25, Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +++ ++      R IIF  T+     +  W      L     R  LL G    
Sbjct  243  KMRLLQTLIEEEWPD----RAIIFANTKHRCEDI--WGH----LAADGHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q+ +  ++ +F  G L++LVAT VA  GL IP    V  Y L  +    V   
Sbjct  289  ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI  344

Query  470  GR-ARADQSVYAF  481
            GR  RA  S ++ 
Sbjct  345  GRTGRAGASGHSI  357


>sp|P0A2P1|RHLB_SALTI ATP-dependent RNA helicase RhlB OS=Salmonella 
typhi OX=90370 GN=rhlB PE=3 SV=2
Length=421

 Score = 38.1 bits (87),  Expect = 0.25, Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +++ ++      R IIF  T+     +  W      L     R  LL G    
Sbjct  243  KMRLLQTLIEEEWPD----RAIIFANTKHRCEDI--WGH----LAADGHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q+ +  ++ +F  G L++LVAT VA  GL IP    V  Y L  +    V   
Sbjct  289  ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI  344

Query  470  GR-ARADQSVYAF  481
            GR  RA  S ++ 
Sbjct  345  GRTGRAGASGHSI  357


>sp|B4TNT3|RHLB_SALSV ATP-dependent RNA helicase RhlB OS=Salmonella 
schwarzengrund (strain CVM19633) OX=439843 GN=rhlB PE=3 
SV=1
Length=421

 Score = 38.1 bits (87),  Expect = 0.25, Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +++ ++      R IIF  T+     +  W      L     R  LL G    
Sbjct  243  KMRLLQTLIEEEWPD----RAIIFANTKHRCEDI--WGH----LAADGHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q+ +  ++ +F  G L++LVAT VA  GL IP    V  Y L  +    V   
Sbjct  289  ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI  344

Query  470  GR-ARADQSVYAF  481
            GR  RA  S ++ 
Sbjct  345  GRTGRAGASGHSI  357


>sp|C0Q2V9|RHLB_SALPC ATP-dependent RNA helicase RhlB OS=Salmonella 
paratyphi C (strain RKS4594) OX=476213 GN=rhlB PE=3 SV=1
Length=421

 Score = 38.1 bits (87),  Expect = 0.25, Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +++ ++      R IIF  T+     +  W      L     R  LL G    
Sbjct  243  KMRLLQTLIEEEWPD----RAIIFANTKHRCEDI--WGH----LAADGHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q+ +  ++ +F  G L++LVAT VA  GL IP    V  Y L  +    V   
Sbjct  289  ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI  344

Query  470  GR-ARADQSVYAF  481
            GR  RA  S ++ 
Sbjct  345  GRTGRAGASGHSI  357


>sp|A9MXF3|RHLB_SALPB ATP-dependent RNA helicase RhlB OS=Salmonella 
paratyphi B (strain ATCC BAA-1250 / SPB7) OX=1016998 GN=rhlB 
PE=3 SV=1
Length=421

 Score = 38.1 bits (87),  Expect = 0.25, Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +++ ++      R IIF  T+     +  W      L     R  LL G    
Sbjct  243  KMRLLQTLIEEEWPD----RAIIFANTKHRCEDI--WGH----LAADGHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q+ +  ++ +F  G L++LVAT VA  GL IP    V  Y L  +    V   
Sbjct  289  ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI  344

Query  470  GR-ARADQSVYAF  481
            GR  RA  S ++ 
Sbjct  345  GRTGRAGASGHSI  357


>sp|B4SZ26|RHLB_SALNS ATP-dependent RNA helicase RhlB OS=Salmonella 
newport (strain SL254) OX=423368 GN=rhlB PE=3 SV=1
Length=421

 Score = 38.1 bits (87),  Expect = 0.25, Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +++ ++      R IIF  T+     +  W      L     R  LL G    
Sbjct  243  KMRLLQTLIEEEWPD----RAIIFANTKHRCEDI--WGH----LAADGHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q+ +  ++ +F  G L++LVAT VA  GL IP    V  Y L  +    V   
Sbjct  289  ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI  344

Query  470  GR-ARADQSVYAF  481
            GR  RA  S ++ 
Sbjct  345  GRTGRAGASGHSI  357


>sp|B4TB13|RHLB_SALHS ATP-dependent RNA helicase RhlB OS=Salmonella 
heidelberg (strain SL476) OX=454169 GN=rhlB PE=3 SV=1
Length=421

 Score = 38.1 bits (87),  Expect = 0.25, Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +++ ++      R IIF  T+     +  W      L     R  LL G    
Sbjct  243  KMRLLQTLIEEEWPD----RAIIFANTKHRCEDI--WGH----LAADGHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q+ +  ++ +F  G L++LVAT VA  GL IP    V  Y L  +    V   
Sbjct  289  ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI  344

Query  470  GR-ARADQSVYAF  481
            GR  RA  S ++ 
Sbjct  345  GRTGRAGASGHSI  357


>sp|B5RFS3|RHLB_SALG2 ATP-dependent RNA helicase RhlB OS=Salmonella 
gallinarum (strain 287/91 / NCTC 13346) OX=550538 GN=rhlB 
PE=3 SV=1
Length=421

 Score = 38.1 bits (87),  Expect = 0.25, Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +++ ++      R IIF  T+     +  W      L     R  LL G    
Sbjct  243  KMRLLQTLIEEEWPD----RAIIFANTKHRCEDI--WGH----LAADGHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q+ +  ++ +F  G L++LVAT VA  GL IP    V  Y L  +    V   
Sbjct  289  ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI  344

Query  470  GR-ARADQSVYAF  481
            GR  RA  S ++ 
Sbjct  345  GRTGRAGASGHSI  357


>sp|B5QVH2|RHLB_SALEP ATP-dependent RNA helicase RhlB OS=Salmonella 
enteritidis PT4 (strain P125109) OX=550537 GN=rhlB PE=3 
SV=1
Length=421

 Score = 38.1 bits (87),  Expect = 0.25, Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +++ ++      R IIF  T+     +  W      L     R  LL G    
Sbjct  243  KMRLLQTLIEEEWPD----RAIIFANTKHRCEDI--WGH----LAADGHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q+ +  ++ +F  G L++LVAT VA  GL IP    V  Y L  +    V   
Sbjct  289  ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI  344

Query  470  GR-ARADQSVYAF  481
            GR  RA  S ++ 
Sbjct  345  GRTGRAGASGHSI  357


>sp|B5FN74|RHLB_SALDC ATP-dependent RNA helicase RhlB OS=Salmonella 
dublin (strain CT_02021853) OX=439851 GN=rhlB PE=3 SV=1
Length=421

 Score = 38.1 bits (87),  Expect = 0.25, Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +++ ++      R IIF  T+     +  W      L     R  LL G    
Sbjct  243  KMRLLQTLIEEEWPD----RAIIFANTKHRCEDI--WGH----LAADGHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q+ +  ++ +F  G L++LVAT VA  GL IP    V  Y L  +    V   
Sbjct  289  ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI  344

Query  470  GR-ARADQSVYAF  481
            GR  RA  S ++ 
Sbjct  345  GRTGRAGASGHSI  357


>sp|Q57HT6|RHLB_SALCH ATP-dependent RNA helicase RhlB OS=Salmonella 
choleraesuis (strain SC-B67) OX=321314 GN=rhlB PE=3 SV=1
Length=421

 Score = 38.1 bits (87),  Expect = 0.25, Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +++ ++      R IIF  T+     +  W      L     R  LL G    
Sbjct  243  KMRLLQTLIEEEWPD----RAIIFANTKHRCEDI--WGH----LAADGHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q+ +  ++ +F  G L++LVAT VA  GL IP    V  Y L  +    V   
Sbjct  289  ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI  344

Query  470  GR-ARADQSVYAF  481
            GR  RA  S ++ 
Sbjct  345  GRTGRAGASGHSI  357


>sp|B5EZ40|RHLB_SALA4 ATP-dependent RNA helicase RhlB OS=Salmonella 
agona (strain SL483) OX=454166 GN=rhlB PE=3 SV=1
Length=421

 Score = 38.1 bits (87),  Expect = 0.25, Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +++ ++      R IIF  T+     +  W      L     R  LL G    
Sbjct  243  KMRLLQTLIEEEWPD----RAIIFANTKHRCEDI--WGH----LAADGHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q+ +  ++ +F  G L++LVAT VA  GL IP    V  Y L  +    V   
Sbjct  289  ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI  344

Query  470  GR-ARADQSVYAF  481
            GR  RA  S ++ 
Sbjct  345  GRTGRAGASGHSI  357


>sp|A8AX17|UVRB_STRGC UvrABC system protein B OS=Streptococcus 
gordonii (strain Challis / ATCC 35105 / BCRC 15272 / CH1 / 
DL1 / V288) OX=467705 GN=uvrB PE=3 SV=1
Length=662

 Score = 38.5 bits (88),  Expect = 0.25, Method: Compositional matrix adjust.
 Identities = 24/108 (22%), Positives = 50/108 (46%), Gaps = 7/108 (6%)

Query  370  GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD  429
            G I  R  ++  + +  L ++      D   ++  G       + +   ++ E+I+  + 
Sbjct  441  GEINARVEKNERTFITTLTKKMAEDLTDYFKEM--GVKVKYMHSDIKTLERTEIIRDLRL  498

Query  430  GTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            G  ++LV  ++  EG+D+P  ++V      + G L NE  ++Q  GRA
Sbjct  499  GVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRA  546


>sp|Q02748|IF4A_DROME Eukaryotic initiation factor 4A OS=Drosophila 
melanogaster OX=7227 GN=eIF4A PE=1 SV=3
Length=403

 Score = 38.1 bits (87),  Expect = 0.25, Method: Compositional matrix adjust.
 Identities = 15/53 (28%), Positives = 33/53 (62%), Gaps = 0/53 (0%)

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN  461
            S+    M QRD++ ++++F+ G+  +L+ T +   G+D+   ++V+ Y L +N
Sbjct  297  SAMHGDMEQRDREVIMKQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSN  349


>sp|B5BIS9|RHLB_SALPK ATP-dependent RNA helicase RhlB OS=Salmonella 
paratyphi A (strain AKU_12601) OX=554290 GN=rhlB PE=3 
SV=1
Length=421

 Score = 38.1 bits (87),  Expect = 0.26, Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +++ ++      R IIF  T+     +  W      L     R  LL G    
Sbjct  243  KMRLLQTLIEEEWPD----RAIIFANTKHRCEDI--WGH----LAADGHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q+ +  ++ +F  G L++LVAT VA  GL IP    V  Y L  +    V   
Sbjct  289  ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI  344

Query  470  GR-ARADQSVYAF  481
            GR  RA  S ++ 
Sbjct  345  GRTGRAGASGHSI  357


>sp|Q4WPE9|PRP28_ASPFU Pre-mRNA-splicing ATP-dependent RNA helicase 
prp28 OS=Aspergillus fumigatus (strain ATCC MYA-4609 / 
CBS 101355 / FGSC A1100 / Af293) OX=330879 GN=prp28 PE=3 SV=1
Length=796

 Score = 38.5 bits (88),  Expect = 0.26, Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 56/107 (52%), Gaps = 8/107 (7%)

Query  407  GNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
            G SS + H   TQ  ++  +   ++G+ ++LVAT +A  G+D+P  ++VV + +  +  S
Sbjct  658  GFSSVTLHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMANSIES  717

Query  465  MVQARGR-ARADQSVYA--FVATEGSR---ELKRELINEALETLMEQ  505
                 GR  RA +S  A  F+  E +    +LK+ L+   +  + E+
Sbjct  718  YTHRIGRTGRAGKSGVAITFLGNEDADVMYDLKQMLMKSPISRVPEE  764


>sp|Q86IZ9|DDX52_DICDI Probable ATP-dependent RNA helicase ddx52 
OS=Dictyostelium discoideum OX=44689 GN=ddx52 PE=3 SV=1
Length=668

 Score = 38.5 bits (88),  Expect = 0.26, Method: Compositional matrix adjust.
 Identities = 39/159 (25%), Positives = 69/159 (43%), Gaps = 30/159 (19%)

Query  319  QILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQ  378
            +I+  E+   A+  D+K     L   G E  KL  + +++Q+       P  +IFT++++
Sbjct  401  KIIIGEQNAAAITVDQK-----LIYVGKEEGKLLAVRQLIQKGLE----PPILIFTQSKE  451

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHM--TQRDQQEVIQKFQDGTLNLLV  436
             AH L                 Q LI  G +    H   TQ  +  +++KF+ G + +L+
Sbjct  452  RAHDLF----------------QELIFDGINVDVIHSERTQFQRDTIVKKFRMGKIWVLI  495

Query  437  ATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGRA  472
             T +   G+D    N V+ +     L + I  +   GRA
Sbjct  496  CTELMARGMDFKGVNFVINFDFPHTLASYIHRIGRTGRA  534


 Score = 34.3 bits (77),  Expect = 4.5, Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 61/135 (45%), Gaps = 17/135 (13%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-------AAYVAKRHLETVDGAKVVVLVNRVHL  59
            Q +VI   L+ + ++   PTG+GKT +       A Y  K+     +G + V++     L
Sbjct  226  QMQVIPILLKEREVVAIAPTGSGKTASFSIPILQALYEPKK-----EGFRSVIIAPTREL  280

Query  60   VTQHGEEFRRMLDGR-WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEE  118
              Q    FR +  G+ + +  LS ++  ++   +L + +D+LI T     + L    +E 
Sbjct  281  AQQIYRNFRLLSKGKPFRICVLSKNLHNQSTNENLIKNYDILITTP----LRLVYLIKEN  336

Query  119  HVELTVFSLIVVDEC  133
             + L     +V DE 
Sbjct  337  LLSLNKVEYLVFDEA  351


>sp|Q4IP34|PRP5_GIBZE Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 
/ FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=PRP5 PE=3 
SV=3
Length=1191

 Score = 38.5 bits (88),  Expect = 0.26, Method: Compositional matrix adjust.
 Identities = 23/75 (31%), Positives = 42/75 (56%), Gaps = 5/75 (7%)

Query  384  LLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVA  441
            L+++++Q+  +  D+  +L++  G    S H    Q D+   I  F+ G + +L+ATSVA
Sbjct  815  LIFVERQE--KADDLLKELMM-KGYPCMSIHGGKDQIDRDSTISDFKKGVVPILIATSVA  871

Query  442  EEGLDIPHCNVVVRY  456
              GLD+    +V+ Y
Sbjct  872  ARGLDVKQLKLVINY  886


>sp|A5GHU1|UVRB_SYNPW UvrABC system protein B OS=Synechococcus 
sp. (strain WH7803) OX=32051 GN=uvrB PE=3 SV=1
Length=678

 Score = 38.5 bits (88),  Expect = 0.26, Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 19/114 (17%)

Query  364  SSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEV  423
            +S   R ++ T T++ A  L  +L + +      +R + L          H  +R   E+
Sbjct  441  ASKQQRVLVTTLTKRMAEDLTDYLAENE------VRVRYL------HSEIHSIER--IEI  486

Query  424  IQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            IQ  + G  ++LV  ++  EGLD+P  ++V      + G L  E S++Q  GRA
Sbjct  487  IQDLRLGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRA  540


>sp|A9MJ29|RHLB_SALAR ATP-dependent RNA helicase RhlB OS=Salmonella 
arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) OX=41514 
GN=rhlB PE=3 SV=1
Length=421

 Score = 38.1 bits (87),  Expect = 0.26, Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +++ ++      R IIF  T+     +  W      L     R  LL G    
Sbjct  243  KMRLLQTLIEEEWPD----RAIIFANTKHRCEDI--WGH----LAADGHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q+ +  ++ +F  G L++LVAT VA  GL IP    V  Y L  +    V   
Sbjct  289  ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI  344

Query  470  GR-ARADQSVYAF  481
            GR  RA  S ++ 
Sbjct  345  GRTGRAGASGHSI  357


>sp|Q9CMB4|RECG_PASMU ATP-dependent DNA helicase RecG OS=Pasteurella 
multocida (strain Pm70) OX=272843 GN=recG PE=3 SV=1
Length=693

 Score = 38.5 bits (88),  Expect = 0.26, Method: Compositional matrix adjust.
 Identities = 14/40 (35%), Positives = 30/40 (75%), Gaps = 0/40 (0%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV  454
            M   ++Q+++Q F+   ++LLVAT+V E G+D+P+ ++++
Sbjct  527  MKPAEKQDIMQAFKQAEIDLLVATTVIEVGVDVPNASLMI  566


>sp|B1L280|UVRB_CLOBM UvrABC system protein B OS=Clostridium botulinum 
(strain Loch Maree / Type A3) OX=498214 GN=uvrB PE=3 
SV=1
Length=662

 Score = 38.5 bits (88),  Expect = 0.26, Method: Compositional matrix adjust.
 Identities = 26/84 (31%), Positives = 44/84 (52%), Gaps = 9/84 (11%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGR-A  472
            ++ ++I   + G  ++LV  ++  EGLDIP   +V      + G L +E S++Q  GR A
Sbjct  482  ERMKIIHDLRKGEFHVLVGINLLREGLDIPEVALVTILDADKEGFLRSETSLIQTVGRAA  541

Query  473  RADQS---VYAFVATEGSRELKRE  493
            R  +S   +Y  V T+   +  RE
Sbjct  542  RNSESKVIMYGDVITKSMEKTIRE  565


>sp|Q9CI06|UVRB_LACLA UvrABC system protein B OS=Lactococcus lactis 
subsp. lactis (strain IL1403) OX=272623 GN=uvrB PE=3 SV=1
Length=692

 Score = 38.5 bits (88),  Expect = 0.26, Method: Compositional matrix adjust.
 Identities = 18/59 (31%), Positives = 34/59 (58%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+I+  + G  ++LV  ++  EG+D+P  ++V      + G L NE  ++Q  GRA
Sbjct  489  ERTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRA  547


>sp|C1CR65|UVRB_STRZT UvrABC system protein B OS=Streptococcus 
pneumoniae (strain Taiwan19F-14) OX=487213 GN=uvrB PE=3 SV=1
Length=662

 Score = 38.1 bits (87),  Expect = 0.26, Method: Compositional matrix adjust.
 Identities = 18/59 (31%), Positives = 34/59 (58%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+I+  + G  ++LV  ++  EG+D+P  ++V      + G L NE  ++Q  GRA
Sbjct  488  ERTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRA  546


>sp|Q7UA24|UVRB_PARMW UvrABC system protein B OS=Parasynechococcus 
marenigrum (strain WH8102) OX=84588 GN=uvrB PE=3 SV=1
Length=677

 Score = 38.1 bits (87),  Expect = 0.27, Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 19/114 (17%)

Query  364  SSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEV  423
            +S   R ++ T T++ A  L  +L + +      +R + L          H  +R   E+
Sbjct  441  ASKQQRVLVTTLTKRMAEDLTDYLAENE------VRVRYL------HSEIHSIER--IEI  486

Query  424  IQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            IQ  + G  ++LV  ++  EGLD+P  ++V      + G L  E S++Q  GRA
Sbjct  487  IQDLRLGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRA  540


>sp|Q31UK5|RHLB_SHIBS ATP-dependent RNA helicase RhlB OS=Shigella 
boydii serotype 4 (strain Sb227) OX=300268 GN=rhlB PE=3 
SV=1
Length=421

 Score = 38.1 bits (87),  Expect = 0.27, Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +++ ++      R IIF  T+     +  W      L     R  LL G    
Sbjct  243  KMRLLQTLIEEEWPD----RAIIFANTKHRCEEI--WGH----LAADGHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q+ +  ++ +F  G L++LVAT VA  GL IP    V  Y L  +    V   
Sbjct  289  ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI  344

Query  470  GR-ARADQSVYAF  481
            GR  RA  S ++ 
Sbjct  345  GRTGRAGASGHSI  357


>sp|B2TU12|RHLB_SHIB3 ATP-dependent RNA helicase RhlB OS=Shigella 
boydii serotype 18 (strain CDC 3083-94 / BS512) OX=344609 
GN=rhlB PE=3 SV=1
Length=421

 Score = 38.1 bits (87),  Expect = 0.27, Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +++ ++      R IIF  T+     +  W      L     R  LL G    
Sbjct  243  KMRLLQTLIEEEWPD----RAIIFANTKHRCEEI--WGH----LAADGHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q+ +  ++ +F  G L++LVAT VA  GL IP    V  Y L  +    V   
Sbjct  289  ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI  344

Query  470  GR-ARADQSVYAF  481
            GR  RA  S ++ 
Sbjct  345  GRTGRAGASGHSI  357


>sp|Q1E0Z3|DBP8_COCIM ATP-dependent RNA helicase DBP8 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=DBP8 PE=3 SV=1
Length=536

 Score = 38.1 bits (87),  Expect = 0.27, Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (2%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR  473
            + Q ++   + +F+     LLVAT VA  GLDIP   +VV + +  N    +   GR AR
Sbjct  395  LPQSERTSNLARFRASAARLLVATDVAARGLDIPSVGLVVNFDVPRNPDDYIHRVGRTAR  454

Query  474  A  474
            A
Sbjct  455  A  455


>sp|Q03SM9|UVRB_LEVBA UvrABC system protein B OS=Levilactobacillus 
brevis (strain ATCC 367 / BCRC 12310 / CIP 105137 / JCM 
1170 / LMG 11437 / NCIMB 947 / NCTC 947) OX=387344 GN=uvrB 
PE=3 SV=1
Length=668

 Score = 38.1 bits (87),  Expect = 0.27, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+++  + G  ++LV  ++  EG+DIP  ++V      + G L NE S++Q  GRA
Sbjct  488  ERTEIMRDLRLGKYDVLVGINLLREGIDIPEVSLVAILDADKEGFLRNERSLIQTIGRA  546


>sp|Q3YVI4|RHLB_SHISS ATP-dependent RNA helicase RhlB OS=Shigella 
sonnei (strain Ss046) OX=300269 GN=rhlB PE=3 SV=1
Length=421

 Score = 38.1 bits (87),  Expect = 0.27, Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +++ ++      R IIF  T+     +  W      L     R  LL G    
Sbjct  243  KMRLLQTLIEEEWPD----RAIIFANTKHRCEEI--WGH----LAADGHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q+ +  ++ +F  G L++LVAT VA  GL IP    V  Y L  +    V   
Sbjct  289  ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI  344

Query  470  GR-ARADQSVYAF  481
            GR  RA  S ++ 
Sbjct  345  GRTGRAGASGHSI  357


>sp|P0A8K0|RHLB_SHIFL ATP-dependent RNA helicase RhlB OS=Shigella 
flexneri OX=623 GN=rhlB PE=3 SV=2
Length=421

 Score = 38.1 bits (87),  Expect = 0.27, Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +++ ++      R IIF  T+     +  W      L     R  LL G    
Sbjct  243  KMRLLQTLIEEEWPD----RAIIFANTKHRCEEI--WGH----LAADGHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q+ +  ++ +F  G L++LVAT VA  GL IP    V  Y L  +    V   
Sbjct  289  ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI  344

Query  470  GR-ARADQSVYAF  481
            GR  RA  S ++ 
Sbjct  345  GRTGRAGASGHSI  357


>sp|Q1R4F9|RHLB_ECOUT ATP-dependent RNA helicase RhlB OS=Escherichia 
coli (strain UTI89 / UPEC) OX=364106 GN=rhlB PE=3 SV=1
Length=421

 Score = 38.1 bits (87),  Expect = 0.27, Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +++ ++      R IIF  T+     +  W      L     R  LL G    
Sbjct  243  KMRLLQTLIEEEWPD----RAIIFANTKHRCEEI--WGH----LAADGHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q+ +  ++ +F  G L++LVAT VA  GL IP    V  Y L  +    V   
Sbjct  289  ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI  344

Query  470  GR-ARADQSVYAF  481
            GR  RA  S ++ 
Sbjct  345  GRTGRAGASGHSI  357


>sp|B6I4B6|RHLB_ECOSE ATP-dependent RNA helicase RhlB OS=Escherichia 
coli (strain SE11) OX=409438 GN=rhlB PE=3 SV=1
Length=421

 Score = 38.1 bits (87),  Expect = 0.27, Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +++ ++      R IIF  T+     +  W      L     R  LL G    
Sbjct  243  KMRLLQTLIEEEWPD----RAIIFANTKHRCEEI--WGH----LAADGHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q+ +  ++ +F  G L++LVAT VA  GL IP    V  Y L  +    V   
Sbjct  289  ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI  344

Query  470  GR-ARADQSVYAF  481
            GR  RA  S ++ 
Sbjct  345  GRTGRAGASGHSI  357


>sp|P0A8J8|RHLB_ECOLI ATP-dependent RNA helicase RhlB OS=Escherichia 
coli (strain K12) OX=83333 GN=rhlB PE=1 SV=2
Length=421

 Score = 38.1 bits (87),  Expect = 0.27, Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +++ ++      R IIF  T+     +  W      L     R  LL G    
Sbjct  243  KMRLLQTLIEEEWPD----RAIIFANTKHRCEEI--WGH----LAADGHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q+ +  ++ +F  G L++LVAT VA  GL IP    V  Y L  +    V   
Sbjct  289  ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI  344

Query  470  GR-ARADQSVYAF  481
            GR  RA  S ++ 
Sbjct  345  GRTGRAGASGHSI  357


>sp|B1IWC0|RHLB_ECOLC ATP-dependent RNA helicase RhlB OS=Escherichia 
coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 
8545 / WDCM 00012 / Crooks) OX=481805 GN=rhlB PE=3 SV=1
Length=421

 Score = 38.1 bits (87),  Expect = 0.27, Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +++ ++      R IIF  T+     +  W      L     R  LL G    
Sbjct  243  KMRLLQTLIEEEWPD----RAIIFANTKHRCEEI--WGH----LAADGHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q+ +  ++ +F  G L++LVAT VA  GL IP    V  Y L  +    V   
Sbjct  289  ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI  344

Query  470  GR-ARADQSVYAF  481
            GR  RA  S ++ 
Sbjct  345  GRTGRAGASGHSI  357


>sp|P0A8J9|RHLB_ECOL6 ATP-dependent RNA helicase RhlB OS=Escherichia 
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 
GN=rhlB PE=3 SV=2
Length=421

 Score = 38.1 bits (87),  Expect = 0.27, Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +++ ++      R IIF  T+     +  W      L     R  LL G    
Sbjct  243  KMRLLQTLIEEEWPD----RAIIFANTKHRCEEI--WGH----LAADGHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q+ +  ++ +F  G L++LVAT VA  GL IP    V  Y L  +    V   
Sbjct  289  ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI  344

Query  470  GR-ARADQSVYAF  481
            GR  RA  S ++ 
Sbjct  345  GRTGRAGASGHSI  357


>sp|Q0TAU3|RHLB_ECOL5 ATP-dependent RNA helicase RhlB OS=Escherichia 
coli O6:K15:H31 (strain 536 / UPEC) OX=362663 GN=rhlB 
PE=3 SV=1
Length=421

 Score = 38.1 bits (87),  Expect = 0.27, Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +++ ++      R IIF  T+     +  W      L     R  LL G    
Sbjct  243  KMRLLQTLIEEEWPD----RAIIFANTKHRCEEI--WGH----LAADGHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q+ +  ++ +F  G L++LVAT VA  GL IP    V  Y L  +    V   
Sbjct  289  ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI  344

Query  470  GR-ARADQSVYAF  481
            GR  RA  S ++ 
Sbjct  345  GRTGRAGASGHSI  357


>sp|A1AHV0|RHLB_ECOK1 ATP-dependent RNA helicase RhlB OS=Escherichia 
coli O1:K1 / APEC OX=405955 GN=rhlB PE=3 SV=1
Length=421

 Score = 38.1 bits (87),  Expect = 0.27, Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +++ ++      R IIF  T+     +  W      L     R  LL G    
Sbjct  243  KMRLLQTLIEEEWPD----RAIIFANTKHRCEEI--WGH----LAADGHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q+ +  ++ +F  G L++LVAT VA  GL IP    V  Y L  +    V   
Sbjct  289  ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI  344

Query  470  GR-ARADQSVYAF  481
            GR  RA  S ++ 
Sbjct  345  GRTGRAGASGHSI  357


>sp|A8A6N4|RHLB_ECOHS ATP-dependent RNA helicase RhlB OS=Escherichia 
coli O9:H4 (strain HS) OX=331112 GN=rhlB PE=3 SV=1
Length=421

 Score = 38.1 bits (87),  Expect = 0.27, Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +++ ++      R IIF  T+     +  W      L     R  LL G    
Sbjct  243  KMRLLQTLIEEEWPD----RAIIFANTKHRCEEI--WGH----LAADGHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q+ +  ++ +F  G L++LVAT VA  GL IP    V  Y L  +    V   
Sbjct  289  ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI  344

Query  470  GR-ARADQSVYAF  481
            GR  RA  S ++ 
Sbjct  345  GRTGRAGASGHSI  357


>sp|B1X9Z4|RHLB_ECODH ATP-dependent RNA helicase RhlB OS=Escherichia 
coli (strain K12 / DH10B) OX=316385 GN=rhlB PE=3 SV=1
Length=421

 Score = 38.1 bits (87),  Expect = 0.27, Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +++ ++      R IIF  T+     +  W      L     R  LL G    
Sbjct  243  KMRLLQTLIEEEWPD----RAIIFANTKHRCEEI--WGH----LAADGHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q+ +  ++ +F  G L++LVAT VA  GL IP    V  Y L  +    V   
Sbjct  289  ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI  344

Query  470  GR-ARADQSVYAF  481
            GR  RA  S ++ 
Sbjct  345  GRTGRAGASGHSI  357


>sp|C4ZZ48|RHLB_ECOBW ATP-dependent RNA helicase RhlB OS=Escherichia 
coli (strain K12 / MC4100 / BW2952) OX=595496 GN=rhlB 
PE=3 SV=1
Length=421

 Score = 38.1 bits (87),  Expect = 0.27, Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +++ ++      R IIF  T+     +  W      L     R  LL G    
Sbjct  243  KMRLLQTLIEEEWPD----RAIIFANTKHRCEEI--WGH----LAADGHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q+ +  ++ +F  G L++LVAT VA  GL IP    V  Y L  +    V   
Sbjct  289  ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI  344

Query  470  GR-ARADQSVYAF  481
            GR  RA  S ++ 
Sbjct  345  GRTGRAGASGHSI  357


>sp|B7M5C7|RHLB_ECO8A ATP-dependent RNA helicase RhlB OS=Escherichia 
coli O8 (strain IAI1) OX=585034 GN=rhlB PE=3 SV=1
Length=421

 Score = 38.1 bits (87),  Expect = 0.27, Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +++ ++      R IIF  T+     +  W      L     R  LL G    
Sbjct  243  KMRLLQTLIEEEWPD----RAIIFANTKHRCEEI--WGH----LAADGHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q+ +  ++ +F  G L++LVAT VA  GL IP    V  Y L  +    V   
Sbjct  289  ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI  344

Query  470  GR-ARADQSVYAF  481
            GR  RA  S ++ 
Sbjct  345  GRTGRAGASGHSI  357


>sp|B7MR01|RHLB_ECO81 ATP-dependent RNA helicase RhlB OS=Escherichia 
coli O81 (strain ED1a) OX=585397 GN=rhlB PE=3 SV=1
Length=421

 Score = 38.1 bits (87),  Expect = 0.27, Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +++ ++      R IIF  T+     +  W      L     R  LL G    
Sbjct  243  KMRLLQTLIEEEWPD----RAIIFANTKHRCEEI--WGH----LAADGHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q+ +  ++ +F  G L++LVAT VA  GL IP    V  Y L  +    V   
Sbjct  289  ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI  344

Query  470  GR-ARADQSVYAF  481
            GR  RA  S ++ 
Sbjct  345  GRTGRAGASGHSI  357


>sp|B7L8B6|RHLB_ECO55 ATP-dependent RNA helicase RhlB OS=Escherichia 
coli (strain 55989 / EAEC) OX=585055 GN=rhlB PE=3 SV=1
Length=421

 Score = 38.1 bits (87),  Expect = 0.27, Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +++ ++      R IIF  T+     +  W      L     R  LL G    
Sbjct  243  KMRLLQTLIEEEWPD----RAIIFANTKHRCEEI--WGH----LAADGHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q+ +  ++ +F  G L++LVAT VA  GL IP    V  Y L  +    V   
Sbjct  289  ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI  344

Query  470  GR-ARADQSVYAF  481
            GR  RA  S ++ 
Sbjct  345  GRTGRAGASGHSI  357


>sp|B7MGJ1|RHLB_ECO45 ATP-dependent RNA helicase RhlB OS=Escherichia 
coli O45:K1 (strain S88 / ExPEC) OX=585035 GN=rhlB PE=3 
SV=1
Length=421

 Score = 38.1 bits (87),  Expect = 0.27, Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +++ ++      R IIF  T+     +  W      L     R  LL G    
Sbjct  243  KMRLLQTLIEEEWPD----RAIIFANTKHRCEEI--WGH----LAADGHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q+ +  ++ +F  G L++LVAT VA  GL IP    V  Y L  +    V   
Sbjct  289  ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI  344

Query  470  GR-ARADQSVYAF  481
            GR  RA  S ++ 
Sbjct  345  GRTGRAGASGHSI  357


>sp|B7UMN5|RHLB_ECO27 ATP-dependent RNA helicase RhlB OS=Escherichia 
coli O127:H6 (strain E2348/69 / EPEC) OX=574521 GN=rhlB 
PE=3 SV=1
Length=421

 Score = 38.1 bits (87),  Expect = 0.27, Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +++ ++      R IIF  T+     +  W      L     R  LL G    
Sbjct  243  KMRLLQTLIEEEWPD----RAIIFANTKHRCEEI--WGH----LAADGHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q+ +  ++ +F  G L++LVAT VA  GL IP    V  Y L  +    V   
Sbjct  289  ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI  344

Query  470  GR-ARADQSVYAF  481
            GR  RA  S ++ 
Sbjct  345  GRTGRAGASGHSI  357


>sp|A7ZTY2|RHLB_ECO24 ATP-dependent RNA helicase RhlB OS=Escherichia 
coli O139:H28 (strain E24377A / ETEC) OX=331111 GN=rhlB 
PE=3 SV=1
Length=421

 Score = 38.1 bits (87),  Expect = 0.27, Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +++ ++      R IIF  T+     +  W      L     R  LL G    
Sbjct  243  KMRLLQTLIEEEWPD----RAIIFANTKHRCEEI--WGH----LAADGHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q+ +  ++ +F  G L++LVAT VA  GL IP    V  Y L  +    V   
Sbjct  289  ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI  344

Query  470  GR-ARADQSVYAF  481
            GR  RA  S ++ 
Sbjct  345  GRTGRAGASGHSI  357


>sp|Q5NFN4|UVRB_FRATT UvrABC system protein B OS=Francisella tularensis 
subsp. tularensis (strain SCHU S4 / Schu 4) OX=177416 
GN=uvrB PE=3 SV=1
Length=668

 Score = 38.1 bits (87),  Expect = 0.27, Method: Compositional matrix adjust.
 Identities = 22/74 (30%), Positives = 40/74 (54%), Gaps = 9/74 (12%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY-----GLLTNEISMVQARGRARADQ  476
            ++I   + G  ++LV  ++  EGLD+P   V++ +     G L +E S++Q  GR   +Q
Sbjct  485  QIIHDLRHGVFDVLVGINLLREGLDMPEVGVLLIFDADKEGFLRSEKSLIQTIGRVARNQ  544

Query  477  S----VYAFVATEG  486
            +    +YA V T+ 
Sbjct  545  NGRAILYADVVTKS  558


>sp|Q9Y7C4|ROK1_CANAL ATP-dependent RNA helicase CHR1 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=CHR1 
PE=3 SV=2
Length=578

 Score = 38.1 bits (87),  Expect = 0.28, Method: Compositional matrix adjust.
 Identities = 32/140 (23%), Positives = 63/140 (45%), Gaps = 13/140 (9%)

Query  416  TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR----  471
            T + ++EVI++F++G + +L+ T V   G+D    N+V+ Y +  +  + V   GR    
Sbjct  413  TPKQREEVIKRFKNGDIWVLITTDVLARGVDFKGVNLVINYDVPQSAQAYVHRIGRTGRG  472

Query  472  ARADQSVYAFVATEGS------RELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDL  525
             +A ++V  F   +          +K+   N+     ME      +K    + Q K  ++
Sbjct  473  GKAGKAVTFFTKEDDKAIKPILNVMKQSGCNDGYSQWMEDMGKLSKK---EKKQIKTHEI  529

Query  526  QQAALTKRAAQAAQRENQRQ  545
            Q+  ++       Q+  QRQ
Sbjct  530  QRKKISTVPKVIKQKRKQRQ  549


>sp|Q10202|DBP3_SCHPO ATP-dependent RNA helicase dbp3 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=dbp3 
PE=3 SV=1
Length=578

 Score = 38.1 bits (87),  Expect = 0.28, Method: Compositional matrix adjust.
 Identities = 44/194 (23%), Positives = 80/194 (41%), Gaps = 29/194 (15%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA-GN  408
            K  ML+ +L++  SS      I+           +L+ ++   ++    R   ++G  G+
Sbjct  399  KERMLDNLLRKHLSSGGKDDKILI---------FVLYKKEAARVEGTLARKYNVVGIHGD  449

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISM  465
             SQ   +      + +  F+ G   +LVAT VA  GLDIP   +V+       + + +  
Sbjct  450  MSQGARL------QALNDFKSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYVHR  503

Query  466  VQARGRARADQSVYAFVATEGSRELKRELIN-------EALETLMEQAVAAVQKMDQAEY  518
            +   GRA    +   F  T   +    EL+N       +  E L +   A   K++   Y
Sbjct  504  IGRTGRANTKGTAITFF-TPQDKSHAGELVNVLRQAKQDIPEGLFKFGTAVKPKLNA--Y  560

Query  519  QAKIRDLQQAALTK  532
             +++ D+   A TK
Sbjct  561  GSRVVDVPVKAATK  574


>sp|B7LU75|RHLB_ESCF3 ATP-dependent RNA helicase RhlB OS=Escherichia 
fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 
/ IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 
/ CDC 0568-73) OX=585054 GN=rhlB PE=3 SV=1
Length=421

 Score = 38.1 bits (87),  Expect = 0.28, Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +++ ++      R IIF  T+     +  W      L     R  LL G    
Sbjct  243  KMRLLQTLIEEEWPD----RAIIFANTKHRCEEI--WGH----LAADGHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q+ +  ++ +F  G L++LVAT VA  GL IP    V  Y L  +    V   
Sbjct  289  ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI  344

Query  470  GR-ARADQSVYAF  481
            GR  RA  S ++ 
Sbjct  345  GRTGRAGASGHSI  357


>sp|Q054D2|UVRB_LEPBL UvrABC system protein B OS=Leptospira borgpetersenii 
serovar Hardjo-bovis (strain L550) OX=355276 GN=uvrB 
PE=3 SV=1
Length=666

 Score = 38.1 bits (87),  Expect = 0.28, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 33/59 (56%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            D+  +I+  + G  ++L+  ++  EGLDIP  ++V      + G L N  S++Q  GRA
Sbjct  482  DRVAIIRDLRKGIYDVLIGINLLREGLDIPEVSLVAILDADKEGFLRNYKSLIQTVGRA  540


>sp|Q04QJ9|UVRB_LEPBJ UvrABC system protein B OS=Leptospira borgpetersenii 
serovar Hardjo-bovis (strain JB197) OX=355277 GN=uvrB 
PE=3 SV=1
Length=666

 Score = 38.1 bits (87),  Expect = 0.28, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 33/59 (56%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            D+  +I+  + G  ++L+  ++  EGLDIP  ++V      + G L N  S++Q  GRA
Sbjct  482  DRVAIIRDLRKGIYDVLIGINLLREGLDIPEVSLVAILDADKEGFLRNYKSLIQTVGRA  540


>sp|Q8H0U8|RH42_ARATH DEAD-box ATP-dependent RNA helicase 42 OS=Arabidopsis 
thaliana OX=3702 GN=RH42 PE=1 SV=2
Length=1166

 Score = 38.5 bits (88),  Expect = 0.28, Method: Compositional matrix adjust.
 Identities = 17/40 (43%), Positives = 25/40 (63%), Gaps = 0/40 (0%)

Query  417  QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY  456
            Q D++  I  F++   NLL+ATSVA  GLD+    +VV +
Sbjct  812  QTDRESTISDFKNDVCNLLIATSVAARGLDVKELELVVNF  851


>sp|Q9NXZ2|DDX43_HUMAN Probable ATP-dependent RNA helicase DDX43 
OS=Homo sapiens OX=9606 GN=DDX43 PE=1 SV=2
Length=648

 Score = 38.1 bits (87),  Expect = 0.28, Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 5/102 (5%)

Query  417  QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARAD  475
            QRD+++ ++ F+ G + +L+AT +A  GLD+     V  +    N    V   GR  RA 
Sbjct  523  QRDREKALENFKTGKVRILIATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAG  582

Query  476  QSVYAFVA-TEGSRELKRELIN---EALETLMEQAVAAVQKM  513
            ++  +    T     +  ELIN    A +++ E+ V+  ++ 
Sbjct  583  RTGVSITTLTRNDWRVASELINILERANQSIPEELVSMAERF  624


>sp|B7NF85|RHLB_ECOLU ATP-dependent RNA helicase RhlB OS=Escherichia 
coli O17:K52:H18 (strain UMN026 / ExPEC) OX=585056 GN=rhlB 
PE=3 SV=1
Length=421

 Score = 38.1 bits (87),  Expect = 0.28, Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +++ ++      R IIF  T+     +  W      L     R  LL G    
Sbjct  243  KMRLLQTLIEEEWPD----RAIIFANTKHRCEEI--WGH----LAADGHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q+ +  ++ +F  G L++LVAT VA  GL IP    V  Y L  +    V   
Sbjct  289  ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI  344

Query  470  GR-ARADQSVYAF  481
            GR  RA  S ++ 
Sbjct  345  GRTGRAGASGHSI  357


>sp|B7NTG2|RHLB_ECO7I ATP-dependent RNA helicase RhlB OS=Escherichia 
coli O7:K1 (strain IAI39 / ExPEC) OX=585057 GN=rhlB PE=3 
SV=1
Length=421

 Score = 38.1 bits (87),  Expect = 0.28, Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +++ ++      R IIF  T+     +  W      L     R  LL G    
Sbjct  243  KMRLLQTLIEEEWPD----RAIIFANTKHRCEEI--WGH----LAADGHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q+ +  ++ +F  G L++LVAT VA  GL IP    V  Y L  +    V   
Sbjct  289  ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI  344

Query  470  GR-ARADQSVYAF  481
            GR  RA  S ++ 
Sbjct  345  GRTGRAGASGHSI  357


>sp|Q9VHS8|IF4A3_DROME Eukaryotic initiation factor 4A-III OS=Drosophila 
melanogaster OX=7227 GN=CG7483 PE=1 SV=1
Length=399

 Score = 38.1 bits (87),  Expect = 0.28, Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 35/64 (55%), Gaps = 0/64 (0%)

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
            SS    M Q+++ E++++F+ G   +L+ T V   G+D+   ++V+ Y L  N    +  
Sbjct  293  SSMHGDMPQKERDEIMKEFRAGQSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHR  352

Query  469  RGRA  472
             GR+
Sbjct  353  IGRS  356


>sp|Q88YI8|UVRB_LACPL UvrABC system protein B OS=Lactiplantibacillus 
plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1) 
OX=220668 GN=uvrB PE=3 SV=1
Length=667

 Score = 38.1 bits (87),  Expect = 0.28, Method: Compositional matrix adjust.
 Identities = 18/59 (31%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ ++I+  + G  ++LV  ++  EG+D+P  ++V      + G L NE S++Q  GRA
Sbjct  488  ERTQIIRDLRLGKFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERSLIQTIGRA  546


>sp|Q0SYX0|RHLB_SHIF8 ATP-dependent RNA helicase RhlB OS=Shigella 
flexneri serotype 5b (strain 8401) OX=373384 GN=rhlB PE=3 
SV=1
Length=421

 Score = 38.1 bits (87),  Expect = 0.28, Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +++ ++      R IIF  T+     +  W      L     R  LL G    
Sbjct  243  KMRLLQTLIEEEWPD----RAIIFANTKHRCEEI--WGH----LAADGHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q+ +  ++ +F  G L++LVAT VA  GL IP    V  Y L  +    V   
Sbjct  289  ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI  344

Query  470  GR-ARADQSVYAF  481
            GR  RA  S ++ 
Sbjct  345  GRTGRAGASGHSI  357


>sp|A7MQI2|RHLB_CROS8 ATP-dependent RNA helicase RhlB OS=Cronobacter 
sakazakii (strain ATCC BAA-894) OX=290339 GN=rhlB PE=3 
SV=1
Length=421

 Score = 38.1 bits (87),  Expect = 0.28, Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +++ ++      R IIF  T+     +  W      L     R  LL G    
Sbjct  243  KMRLLQTLIEEEWPD----RAIIFANTKHRCEDI--WGH----LAADGHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q+ +  ++ +F  G L++LVAT VA  GL IP    V  Y L  +    V   
Sbjct  289  ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI  344

Query  470  GR-ARADQSVYAF  481
            GR  RA  S ++ 
Sbjct  345  GRTGRAGASGHSI  357


>sp|B7LJY3|UVRB_ESCF3 UvrABC system protein B OS=Escherichia fergusonii 
(strain ATCC 35469 / DSM 13698 / CCUG 18766 / IAM 
14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 / CDC 
0568-73) OX=585054 GN=uvrB PE=3 SV=1
Length=673

 Score = 38.1 bits (87),  Expect = 0.28, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  484  ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  542


>sp|Q32I48|UVRB_SHIDS UvrABC system protein B OS=Shigella dysenteriae 
serotype 1 (strain Sd197) OX=300267 GN=uvrB PE=3 SV=1
Length=673

 Score = 38.1 bits (87),  Expect = 0.28, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  484  ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  542


>sp|Q8FJP8|UVRB_ECOL6 UvrABC system protein B OS=Escherichia coli 
O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=uvrB 
PE=3 SV=3
Length=673

 Score = 38.1 bits (87),  Expect = 0.28, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  484  ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  542


>sp|Q0TJR9|UVRB_ECOL5 UvrABC system protein B OS=Escherichia coli 
O6:K15:H31 (strain 536 / UPEC) OX=362663 GN=uvrB PE=3 SV=1
Length=673

 Score = 38.1 bits (87),  Expect = 0.28, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  484  ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  542


>sp|B7MQN2|UVRB_ECO81 UvrABC system protein B OS=Escherichia coli 
O81 (strain ED1a) OX=585397 GN=uvrB PE=3 SV=1
Length=673

 Score = 38.1 bits (87),  Expect = 0.28, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  484  ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  542


>sp|B7NNK9|UVRB_ECO7I UvrABC system protein B OS=Escherichia coli 
O7:K1 (strain IAI39 / ExPEC) OX=585057 GN=uvrB PE=3 SV=1
Length=673

 Score = 38.1 bits (87),  Expect = 0.28, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  484  ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  542


>sp|A3PFD7|UVRB_PROM0 UvrABC system protein B OS=Prochlorococcus 
marinus (strain MIT 9301) OX=167546 GN=uvrB PE=3 SV=1
Length=679

 Score = 38.1 bits (87),  Expect = 0.29, Method: Compositional matrix adjust.
 Identities = 25/79 (32%), Positives = 41/79 (52%), Gaps = 6/79 (8%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGR-ARAD  475
            E+IQ  + G  ++LV  ++  EGLD+P  ++V      + G L  E S++Q  GR AR  
Sbjct  485  EIIQDLRMGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAARHV  544

Query  476  QSVYAFVATEGSRELKREL  494
            + V    A   +  +KR +
Sbjct  545  EGVALLYADNFTDSMKRAI  563


>sp|Q3Z405|UVRB_SHISS UvrABC system protein B OS=Shigella sonnei 
(strain Ss046) OX=300269 GN=uvrB PE=3 SV=1
Length=673

 Score = 38.1 bits (87),  Expect = 0.29, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  484  ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  542


>sp|Q324B3|UVRB_SHIBS UvrABC system protein B OS=Shigella boydii 
serotype 4 (strain Sb227) OX=300268 GN=uvrB PE=3 SV=1
Length=673

 Score = 38.1 bits (87),  Expect = 0.29, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  484  ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  542


>sp|B2TVF1|UVRB_SHIB3 UvrABC system protein B OS=Shigella boydii 
serotype 18 (strain CDC 3083-94 / BS512) OX=344609 GN=uvrB 
PE=3 SV=1
Length=673

 Score = 38.1 bits (87),  Expect = 0.29, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  484  ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  542


>sp|B4TC52|UVRB_SALHS UvrABC system protein B OS=Salmonella heidelberg 
(strain SL476) OX=454169 GN=uvrB PE=3 SV=1
Length=673

 Score = 38.1 bits (87),  Expect = 0.29, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  484  ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  542


>sp|B5XYX2|UVRB_KLEP3 UvrABC system protein B OS=Klebsiella pneumoniae 
(strain 342) OX=507522 GN=uvrB PE=3 SV=1
Length=673

 Score = 38.1 bits (87),  Expect = 0.29, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  484  ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  542


>sp|Q1REF1|UVRB_ECOUT UvrABC system protein B OS=Escherichia coli 
(strain UTI89 / UPEC) OX=364106 GN=uvrB PE=3 SV=1
Length=673

 Score = 38.1 bits (87),  Expect = 0.29, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  484  ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  542


>sp|B1LM70|UVRB_ECOSM UvrABC system protein B OS=Escherichia coli 
(strain SMS-3-5 / SECEC) OX=439855 GN=uvrB PE=3 SV=1
Length=673

 Score = 38.1 bits (87),  Expect = 0.29, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  484  ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  542


>sp|B6I7T4|UVRB_ECOSE UvrABC system protein B OS=Escherichia coli 
(strain SE11) OX=409438 GN=uvrB PE=3 SV=1
Length=673

 Score = 38.1 bits (87),  Expect = 0.29, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  484  ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  542


>sp|B7NA78|UVRB_ECOLU UvrABC system protein B OS=Escherichia coli 
O17:K52:H18 (strain UMN026 / ExPEC) OX=585056 GN=uvrB PE=3 
SV=1
Length=673

 Score = 38.1 bits (87),  Expect = 0.29, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  484  ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  542


>sp|P0A8F8|UVRB_ECOLI UvrABC system protein B OS=Escherichia coli 
(strain K12) OX=83333 GN=uvrB PE=1 SV=2
Length=673

 Score = 38.1 bits (87),  Expect = 0.29, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  484  ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  542


>sp|B1IXI9|UVRB_ECOLC UvrABC system protein B OS=Escherichia coli 
(strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / 
WDCM 00012 / Crooks) OX=481805 GN=uvrB PE=3 SV=1
Length=673

 Score = 38.1 bits (87),  Expect = 0.29, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  484  ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  542


>sp|A1A921|UVRB_ECOK1 UvrABC system protein B OS=Escherichia coli 
O1:K1 / APEC OX=405955 GN=uvrB PE=3 SV=1
Length=673

 Score = 38.1 bits (87),  Expect = 0.29, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  484  ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  542


>sp|A7ZY35|UVRB_ECOHS UvrABC system protein B OS=Escherichia coli 
O9:H4 (strain HS) OX=331112 GN=uvrB PE=3 SV=1
Length=673

 Score = 38.1 bits (87),  Expect = 0.29, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  484  ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  542


>sp|B1X7A9|UVRB_ECODH UvrABC system protein B OS=Escherichia coli 
(strain K12 / DH10B) OX=316385 GN=uvrB PE=3 SV=1
Length=673

 Score = 38.1 bits (87),  Expect = 0.29, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  484  ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  542


>sp|C4ZXV1|UVRB_ECOBW UvrABC system protein B OS=Escherichia coli 
(strain K12 / MC4100 / BW2952) OX=595496 GN=uvrB PE=3 SV=1
Length=673

 Score = 38.1 bits (87),  Expect = 0.29, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  484  ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  542


>sp|B7M751|UVRB_ECO8A UvrABC system protein B OS=Escherichia coli 
O8 (strain IAI1) OX=585034 GN=uvrB PE=3 SV=1
Length=673

 Score = 38.1 bits (87),  Expect = 0.29, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  484  ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  542


>sp|B5YRL8|UVRB_ECO5E UvrABC system protein B OS=Escherichia coli 
O157:H7 (strain EC4115 / EHEC) OX=444450 GN=uvrB PE=3 SV=1
Length=673

 Score = 38.1 bits (87),  Expect = 0.29, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  484  ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  542


>sp|P0A8F9|UVRB_ECO57 UvrABC system protein B OS=Escherichia coli 
O157:H7 OX=83334 GN=uvrB PE=3 SV=2
Length=673

 Score = 38.1 bits (87),  Expect = 0.29, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  484  ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  542


>sp|B7LC61|UVRB_ECO55 UvrABC system protein B OS=Escherichia coli 
(strain 55989 / EAEC) OX=585055 GN=uvrB PE=3 SV=1
Length=673

 Score = 38.1 bits (87),  Expect = 0.29, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  484  ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  542


>sp|B7MGN7|UVRB_ECO45 UvrABC system protein B OS=Escherichia coli 
O45:K1 (strain S88 / ExPEC) OX=585035 GN=uvrB PE=3 SV=1
Length=673

 Score = 38.1 bits (87),  Expect = 0.29, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  484  ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  542


>sp|B7ULX6|UVRB_ECO27 UvrABC system protein B OS=Escherichia coli 
O127:H6 (strain E2348/69 / EPEC) OX=574521 GN=uvrB PE=3 
SV=1
Length=673

 Score = 38.1 bits (87),  Expect = 0.29, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  484  ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  542


>sp|A7ZJI8|UVRB_ECO24 UvrABC system protein B OS=Escherichia coli 
O139:H28 (strain E24377A / ETEC) OX=331111 GN=uvrB PE=3 
SV=1
Length=673

 Score = 38.1 bits (87),  Expect = 0.29, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  484  ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  542


>sp|B7GSZ2|UVRB_BIFLS UvrABC system protein B OS=Bifidobacterium 
longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 
1222 / NCTC 11817 / S12) OX=391904 GN=uvrB PE=3 SV=1
Length=703

 Score = 38.1 bits (87),  Expect = 0.29, Method: Compositional matrix adjust.
 Identities = 21/82 (26%), Positives = 45/82 (55%), Gaps = 5/82 (6%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRARADQ  476
            E+++  ++G ++++V  ++  EGLD+P  ++V      + G L +  S++Q  GRA  + 
Sbjct  492  ELLRMLREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTIGRAARNV  551

Query  477  SVYAFVATEGSRELKRELINEA  498
            S    +  + + E  R+ I+E 
Sbjct  552  SGVVIMYADETTEAMRQAIDET  573


>sp|Q8Z889|UVRB_SALTI UvrABC system protein B OS=Salmonella typhi 
OX=90370 GN=uvrB PE=3 SV=1
Length=673

 Score = 38.1 bits (87),  Expect = 0.29, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  484  ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  542


>sp|A6T6L9|UVRB_KLEP7 UvrABC system protein B OS=Klebsiella pneumoniae 
subsp. pneumoniae (strain ATCC 700721 / MGH 78578) 
OX=272620 GN=uvrB PE=3 SV=1
Length=673

 Score = 38.1 bits (87),  Expect = 0.29, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  484  ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  542


>sp|A1R6F3|UVRB_PAEAT UvrABC system protein B OS=Paenarthrobacter 
aurescens (strain TC1) OX=290340 GN=uvrB PE=3 SV=1
Length=699

 Score = 38.1 bits (87),  Expect = 0.29, Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 11/110 (10%)

Query  370  GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKF  427
            G I TRT ++   L+  L ++      D     L+G G   +  H  +    + E++++ 
Sbjct  444  GEIRTRTEKNERVLVTTLTKRMAEDLTD----YLVGHGVKVEYLHSDVDTLRRVELLREL  499

Query  428  QDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            + G  ++LV  ++  EGLD+P  ++V      + G L +  S++Q  GRA
Sbjct  500  RMGVFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSSTSLIQTIGRA  549


>sp|Q8XAT4|RHLB_ECO57 ATP-dependent RNA helicase RhlB OS=Escherichia 
coli O157:H7 OX=83334 GN=rhlB PE=3 SV=3
Length=421

 Score = 38.1 bits (87),  Expect = 0.29, Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 52/122 (43%), Gaps = 18/122 (15%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +++ ++      R IIF  T+     +  W      L     R  LL G    
Sbjct  243  KMRLLQTLIEEEWPD----RAIIFANTKHRCEEI--WGH----LAADGHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q+ +  ++ +F  G L++LVAT VA  GL IP    V  Y L  +    V   
Sbjct  289  ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI  344

Query  470  GR  471
            GR
Sbjct  345  GR  346


>sp|Q9LU46|RH35_ARATH DEAD-box ATP-dependent RNA helicase 35 OS=Arabidopsis 
thaliana OX=3702 GN=RH35 PE=2 SV=1
Length=591

 Score = 38.1 bits (87),  Expect = 0.29, Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 3/58 (5%)

Query  417  QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGR  471
            Q D++  I  F+ G  ++LVAT VA +GLD P    V+ Y +   + N +  +   GR
Sbjct  433  QEDREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGR  490


>sp|Q8ZQQ4|UVRB_SALTY UvrABC system protein B OS=Salmonella typhimurium 
(strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=uvrB 
PE=3 SV=1
Length=673

 Score = 38.1 bits (87),  Expect = 0.29, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  484  ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  542


>sp|B4TQU3|UVRB_SALSV UvrABC system protein B OS=Salmonella schwarzengrund 
(strain CVM19633) OX=439843 GN=uvrB PE=3 SV=1
Length=673

 Score = 38.1 bits (87),  Expect = 0.29, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  484  ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  542


>sp|C0PWY7|UVRB_SALPC UvrABC system protein B OS=Salmonella paratyphi 
C (strain RKS4594) OX=476213 GN=uvrB PE=3 SV=1
Length=673

 Score = 38.1 bits (87),  Expect = 0.29, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  484  ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  542


>sp|A9MTI2|UVRB_SALPB UvrABC system protein B OS=Salmonella paratyphi 
B (strain ATCC BAA-1250 / SPB7) OX=1016998 GN=uvrB PE=3 
SV=1
Length=673

 Score = 38.1 bits (87),  Expect = 0.29, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  484  ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  542


>sp|B4SZK1|UVRB_SALNS UvrABC system protein B OS=Salmonella newport 
(strain SL254) OX=423368 GN=uvrB PE=3 SV=1
Length=673

 Score = 38.1 bits (87),  Expect = 0.29, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  484  ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  542


>sp|B5R765|UVRB_SALG2 UvrABC system protein B OS=Salmonella gallinarum 
(strain 287/91 / NCTC 13346) OX=550538 GN=uvrB PE=3 
SV=1
Length=673

 Score = 38.1 bits (87),  Expect = 0.29, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  484  ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  542


>sp|B5QX69|UVRB_SALEP UvrABC system protein B OS=Salmonella enteritidis 
PT4 (strain P125109) OX=550537 GN=uvrB PE=3 SV=1
Length=673

 Score = 38.1 bits (87),  Expect = 0.29, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  484  ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  542


>sp|B5FP65|UVRB_SALDC UvrABC system protein B OS=Salmonella dublin 
(strain CT_02021853) OX=439851 GN=uvrB PE=3 SV=1
Length=673

 Score = 38.1 bits (87),  Expect = 0.29, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  484  ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  542


>sp|Q57RF9|UVRB_SALCH UvrABC system protein B OS=Salmonella choleraesuis 
(strain SC-B67) OX=321314 GN=uvrB PE=3 SV=1
Length=673

 Score = 38.1 bits (87),  Expect = 0.29, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  484  ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  542


>sp|B5F076|UVRB_SALA4 UvrABC system protein B OS=Salmonella agona 
(strain SL483) OX=454166 GN=uvrB PE=3 SV=1
Length=673

 Score = 38.1 bits (87),  Expect = 0.29, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  484  ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  542


>sp|Q10RI7|RH38_ORYSJ DEAD-box ATP-dependent RNA helicase 38 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os03g0158200 PE=3 
SV=1
Length=505

 Score = 38.1 bits (87),  Expect = 0.29, Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 42/88 (48%), Gaps = 14/88 (16%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            IIF RT+QS   +         L   D     + G+        + Q +++++IQ+F++G
Sbjct  354  IIFVRTKQSTKDV------HNALTLEDYVCSSIQGS--------LDQSEREKIIQEFKNG  399

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGL  458
               +L++T V   G D    N+V+ Y +
Sbjct  400  YTKVLISTDVLARGFDQAQVNLVINYDM  427


>sp|P57381|MFD_BUCAI Transcription-repair-coupling factor OS=Buchnera 
aphidicola subsp. Acyrthosiphon pisum (strain APS) OX=107806 
GN=mfd PE=3 SV=1
Length=812

 Score = 38.1 bits (87),  Expect = 0.29, Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 16/89 (18%)

Query  400  AQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----  454
            A + IG G       M   D ++V+ +F +   N+L+ T++ E G+DI   N ++     
Sbjct  501  ASIKIGHG------QMKNIDLKKVMNEFYNNKFNVLICTTIIESGVDIARANTIIIENSD  554

Query  455  RYGLLTNEISMVQARGR-ARADQSVYAFV  482
             +GL      + Q RGR  R++   YA +
Sbjct  555  HFGLS----QLHQLRGRIGRSNNQAYALL  579


>sp|B5BC27|UVRB_SALPK UvrABC system protein B OS=Salmonella paratyphi 
A (strain AKU_12601) OX=554290 GN=uvrB PE=3 SV=1
Length=673

 Score = 38.1 bits (87),  Expect = 0.29, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  484  ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  542


>sp|Q5PG52|UVRB_SALPA UvrABC system protein B OS=Salmonella paratyphi 
A (strain ATCC 9150 / SARB42) OX=295319 GN=uvrB PE=3 
SV=1
Length=673

 Score = 38.1 bits (87),  Expect = 0.29, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  484  ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  542


>sp|A7GIY3|UVRB_CLOBL UvrABC system protein B OS=Clostridium botulinum 
(strain Langeland / NCTC 10281 / Type F) OX=441772 
GN=uvrB PE=3 SV=1
Length=662

 Score = 38.1 bits (87),  Expect = 0.30, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 33/59 (56%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ ++I   + G  ++LV  ++  EGLDIP   +V      + G L +E S++Q  GRA
Sbjct  482  ERMKIIHDLRKGEFHVLVGINLLREGLDIPEVALVTILDADKEGFLRSETSLIQTVGRA  540


>sp|B1IFX3|UVRB_CLOBK UvrABC system protein B OS=Clostridium botulinum 
(strain Okra / Type B1) OX=498213 GN=uvrB PE=3 SV=1
Length=662

 Score = 38.1 bits (87),  Expect = 0.30, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 33/59 (56%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ ++I   + G  ++LV  ++  EGLDIP   +V      + G L +E S++Q  GRA
Sbjct  482  ERMKIIHDLRKGEFHVLVGINLLREGLDIPEVALVTILDADKEGFLRSETSLIQTVGRA  540


>sp|A7FYY1|UVRB_CLOB1 UvrABC system protein B OS=Clostridium botulinum 
(strain ATCC 19397 / Type A) OX=441770 GN=uvrB PE=3 
SV=1
Length=662

 Score = 38.1 bits (87),  Expect = 0.30, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 33/59 (56%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ ++I   + G  ++LV  ++  EGLDIP   +V      + G L +E S++Q  GRA
Sbjct  482  ERMKIIHDLRKGEFHVLVGINLLREGLDIPEVALVTILDADKEGFLRSETSLIQTVGRA  540


>sp|A4W8C2|UVRB_ENT38 UvrABC system protein B OS=Enterobacter 
sp. (strain 638) OX=399742 GN=uvrB PE=3 SV=1
Length=673

 Score = 38.1 bits (87),  Expect = 0.30, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  484  ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  542


>sp|A9BD93|UVRB_PROM4 UvrABC system protein B OS=Prochlorococcus 
marinus (strain MIT 9211) OX=93059 GN=uvrB PE=3 SV=1
Length=679

 Score = 38.1 bits (87),  Expect = 0.30, Method: Compositional matrix adjust.
 Identities = 20/56 (36%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+IQ  + G  ++LV  ++  EGLD+P  ++VV     + G L  + S++Q  GRA
Sbjct  485  EIIQDLRVGEYDVLVGVNLLREGLDLPEVSLVVILDADKEGFLRAKRSLIQTIGRA  540


>sp|B1JQ11|RHLB_YERPY ATP-dependent RNA helicase RhlB OS=Yersinia 
pseudotuberculosis serotype O:3 (strain YPIII) OX=502800 
GN=rhlB PE=3 SV=1
Length=428

 Score = 37.7 bits (86),  Expect = 0.30, Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 58/133 (44%), Gaps = 19/133 (14%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +++ ++      R IIF  T+     +  W      L     R  LL G    
Sbjct  243  KMRLLQTLIEEEWPD----RCIIFANTKHRCEEI--WGH----LAADGHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q+ +  +++ F  G L++LVAT VA  GL IP    V  Y L  +    V   
Sbjct  289  ----DVAQKKRLRILEDFTKGDLDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRI  344

Query  470  GR-ARADQSVYAF  481
            GR  RA +S ++ 
Sbjct  345  GRTGRAGESGHSI  357


>sp|Q66G19|RHLB_YERPS ATP-dependent RNA helicase RhlB OS=Yersinia 
pseudotuberculosis serotype I (strain IP32953) OX=273123 
GN=rhlB PE=3 SV=1
Length=428

 Score = 37.7 bits (86),  Expect = 0.30, Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 58/133 (44%), Gaps = 19/133 (14%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +++ ++      R IIF  T+     +  W      L     R  LL G    
Sbjct  243  KMRLLQTLIEEEWPD----RCIIFANTKHRCEEI--WGH----LAADGHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q+ +  +++ F  G L++LVAT VA  GL IP    V  Y L  +    V   
Sbjct  289  ----DVAQKKRLRILEDFTKGDLDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRI  344

Query  470  GR-ARADQSVYAF  481
            GR  RA +S ++ 
Sbjct  345  GRTGRAGESGHSI  357


>sp|A4TRC8|RHLB_YERPP ATP-dependent RNA helicase RhlB OS=Yersinia 
pestis (strain Pestoides F) OX=386656 GN=rhlB PE=3 SV=1
Length=428

 Score = 37.7 bits (86),  Expect = 0.30, Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 58/133 (44%), Gaps = 19/133 (14%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +++ ++      R IIF  T+     +  W      L     R  LL G    
Sbjct  243  KMRLLQTLIEEEWPD----RCIIFANTKHRCEEI--WGH----LAADGHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q+ +  +++ F  G L++LVAT VA  GL IP    V  Y L  +    V   
Sbjct  289  ----DVAQKKRLRILEDFTKGDLDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRI  344

Query  470  GR-ARADQSVYAF  481
            GR  RA +S ++ 
Sbjct  345  GRTGRAGESGHSI  357


>sp|Q1CNK3|RHLB_YERPN ATP-dependent RNA helicase RhlB OS=Yersinia 
pestis bv. Antiqua (strain Nepal516) OX=377628 GN=rhlB PE=3 
SV=1
Length=428

 Score = 37.7 bits (86),  Expect = 0.30, Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 58/133 (44%), Gaps = 19/133 (14%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +++ ++      R IIF  T+     +  W      L     R  LL G    
Sbjct  243  KMRLLQTLIEEEWPD----RCIIFANTKHRCEEI--WGH----LAADGHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q+ +  +++ F  G L++LVAT VA  GL IP    V  Y L  +    V   
Sbjct  289  ----DVAQKKRLRILEDFTKGDLDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRI  344

Query  470  GR-ARADQSVYAF  481
            GR  RA +S ++ 
Sbjct  345  GRTGRAGESGHSI  357


>sp|Q8ZAD8|RHLB_YERPE ATP-dependent RNA helicase RhlB OS=Yersinia 
pestis OX=632 GN=rhlB PE=3 SV=1
Length=428

 Score = 37.7 bits (86),  Expect = 0.30, Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 58/133 (44%), Gaps = 19/133 (14%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +++ ++      R IIF  T+     +  W      L     R  LL G    
Sbjct  243  KMRLLQTLIEEEWPD----RCIIFANTKHRCEEI--WGH----LAADGHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q+ +  +++ F  G L++LVAT VA  GL IP    V  Y L  +    V   
Sbjct  289  ----DVAQKKRLRILEDFTKGDLDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRI  344

Query  470  GR-ARADQSVYAF  481
            GR  RA +S ++ 
Sbjct  345  GRTGRAGESGHSI  357


>sp|B2K046|RHLB_YERPB ATP-dependent RNA helicase RhlB OS=Yersinia 
pseudotuberculosis serotype IB (strain PB1/+) OX=502801 
GN=rhlB PE=3 SV=1
Length=428

 Score = 37.7 bits (86),  Expect = 0.30, Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 58/133 (44%), Gaps = 19/133 (14%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +++ ++      R IIF  T+     +  W      L     R  LL G    
Sbjct  243  KMRLLQTLIEEEWPD----RCIIFANTKHRCEEI--WGH----LAADGHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q+ +  +++ F  G L++LVAT VA  GL IP    V  Y L  +    V   
Sbjct  289  ----DVAQKKRLRILEDFTKGDLDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRI  344

Query  470  GR-ARADQSVYAF  481
            GR  RA +S ++ 
Sbjct  345  GRTGRAGESGHSI  357


>sp|Q1CBQ4|RHLB_YERPA ATP-dependent RNA helicase RhlB OS=Yersinia 
pestis bv. Antiqua (strain Antiqua) OX=360102 GN=rhlB PE=3 
SV=1
Length=428

 Score = 37.7 bits (86),  Expect = 0.30, Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 58/133 (44%), Gaps = 19/133 (14%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +++ ++      R IIF  T+     +  W      L     R  LL G    
Sbjct  243  KMRLLQTLIEEEWPD----RCIIFANTKHRCEEI--WGH----LAADGHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q+ +  +++ F  G L++LVAT VA  GL IP    V  Y L  +    V   
Sbjct  289  ----DVAQKKRLRILEDFTKGDLDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRI  344

Query  470  GR-ARADQSVYAF  481
            GR  RA +S ++ 
Sbjct  345  GRTGRAGESGHSI  357


>sp|A7FD47|RHLB_YERP3 ATP-dependent RNA helicase RhlB OS=Yersinia 
pseudotuberculosis serotype O:1b (strain IP 31758) OX=349747 
GN=rhlB PE=3 SV=1
Length=428

 Score = 37.7 bits (86),  Expect = 0.30, Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 58/133 (44%), Gaps = 19/133 (14%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +++ ++      R IIF  T+     +  W      L     R  LL G    
Sbjct  243  KMRLLQTLIEEEWPD----RCIIFANTKHRCEEI--WGH----LAADGHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q+ +  +++ F  G L++LVAT VA  GL IP    V  Y L  +    V   
Sbjct  289  ----DVAQKKRLRILEDFTKGDLDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRI  344

Query  470  GR-ARADQSVYAF  481
            GR  RA +S ++ 
Sbjct  345  GRTGRAGESGHSI  357


>sp|C1FMK5|UVRB_CLOBJ UvrABC system protein B OS=Clostridium botulinum 
(strain Kyoto / Type A2) OX=536232 GN=uvrB PE=3 SV=1
Length=662

 Score = 38.1 bits (87),  Expect = 0.30, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 33/59 (56%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ ++I   + G  ++LV  ++  EGLDIP   +V      + G L +E S++Q  GRA
Sbjct  482  ERMKIIHDLRKGEFHVLVGINLLREGLDIPEVALVTILDADKEGFLRSETSLIQTVGRA  540


>sp|C3KV20|UVRB_CLOB6 UvrABC system protein B OS=Clostridium botulinum 
(strain 657 / Type Ba4) OX=515621 GN=uvrB PE=3 SV=1
Length=662

 Score = 38.1 bits (87),  Expect = 0.30, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 33/59 (56%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ ++I   + G  ++LV  ++  EGLDIP   +V      + G L +E S++Q  GRA
Sbjct  482  ERMKIIHDLRKGEFHVLVGINLLREGLDIPEVALVTILDADKEGFLRSETSLIQTVGRA  540


>sp|Q837R9|UVRB_ENTFA UvrABC system protein B OS=Enterococcus 
faecalis (strain ATCC 700802 / V583) OX=226185 GN=uvrB PE=3 
SV=1
Length=665

 Score = 38.1 bits (87),  Expect = 0.30, Method: Compositional matrix adjust.
 Identities = 17/59 (29%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+I+  + G  ++L+  ++  EG+D+P  +++      + G L +E S+VQ  GRA
Sbjct  488  ERTEIIRDLRLGEFDILIGINLLREGIDVPEVSLIAILDADKEGFLRSERSLVQTMGRA  546


>sp|P27639|IF4A_CAEEL Eukaryotic initiation factor 4A OS=Caenorhabditis 
elegans OX=6239 GN=inf-1 PE=2 SV=1
Length=402

 Score = 37.7 bits (86),  Expect = 0.31, Method: Compositional matrix adjust.
 Identities = 30/133 (23%), Positives = 61/133 (46%), Gaps = 17/133 (13%)

Query  362  FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ  421
            ++  N  + +IF  TR+   +L   + + Q           L G         M Q ++ 
Sbjct  263  YNVVNVTQAVIFCNTRRKVDTLTEKMTENQ------FTVSCLHG--------DMDQAERD  308

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA-RADQSVYA  480
             ++++F+ G+  +L+ T +   G+D+   ++V+ Y L +N  + +   GR+ R  +   A
Sbjct  309  TIMREFRSGSSRVLITTDILARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVA  368

Query  481  --FVATEGSRELK  491
              FV    +R+LK
Sbjct  369  INFVTENDARQLK  381


>sp|A9MJE1|UVRB_SALAR UvrABC system protein B OS=Salmonella arizonae 
(strain ATCC BAA-731 / CDC346-86 / RSK2980) OX=41514 
GN=uvrB PE=3 SV=1
Length=673

 Score = 38.1 bits (87),  Expect = 0.31, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  484  ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  542


>sp|O51528|RECG_BORBU ATP-dependent DNA helicase RecG OS=Borreliella 
burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 
/ B31) OX=224326 GN=recG PE=3 SV=1
Length=686

 Score = 38.1 bits (87),  Expect = 0.31, Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 40/69 (58%), Gaps = 10/69 (14%)

Query  420  QQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGR-AR  473
            ++E+++ F    +++LVATSV E G+D P+   +V     R+GL T    + Q RGR  R
Sbjct  521  KEEIMKNFYSKKVDILVATSVIEVGIDCPNATCMVVEHAERFGLST----LHQIRGRVGR  576

Query  474  ADQSVYAFV  482
            ++   + F+
Sbjct  577  SNLQSFFFL  585


>sp|Q088J2|RHLB_SHEFN ATP-dependent RNA helicase RhlB OS=Shewanella 
frigidimarina (strain NCIMB 400) OX=318167 GN=rhlB PE=3 
SV=1
Length=434

 Score = 37.7 bits (86),  Expect = 0.31, Method: Compositional matrix adjust.
 Identities = 48/178 (27%), Positives = 73/178 (41%), Gaps = 38/178 (21%)

Query  323  AERRLLALFDD----RKNELAHLATHGPENPKLEMLEK----ILQRQFSSSNSPR-----  369
            A+ RL  LF      +  ELA+   + PE  ++E LEK    I +  F  S   +     
Sbjct  189  AKSRLNMLFSATLSMKVQELAYDHMNDPEKVEIEPLEKTSKNIKEEIFYPSMEDKMRLLL  248

Query  370  ----------GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRD  419
                       I+F+ T+ S   L  +L+          R  LL G         + Q+ 
Sbjct  249  SLIEEDWPDKAIVFSNTKHSCEKLWSYLEGDGH------RVGLLTG--------DVPQKK  294

Query  420  QQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQ  476
            +  ++++F  G +++LVAT VA  GL I   + V  Y L  +    V   GR  RA Q
Sbjct  295  RIRILEQFTSGEIDVLVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGQ  352


>sp|A6SFW7|DBP2_BOTFB ATP-dependent RNA helicase dbp2 OS=Botryotinia 
fuckeliana (strain B05.10) OX=332648 GN=dbp2 PE=3 SV=3
Length=574

 Score = 38.1 bits (87),  Expect = 0.32, Method: Compositional matrix adjust.
 Identities = 40/145 (28%), Positives = 70/145 (48%), Gaps = 21/145 (14%)

Query  354  LEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQST  413
            LEKI++ + +     + +IFT T++ A  +  +L+Q  G   + I        G+  Q+ 
Sbjct  390  LEKIMEDKDN-----KILIFTGTKRVADDITRFLRQD-GWPALSIH-------GDKQQN-  435

Query  414  HMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-A  472
               +RD   V+ +F+ G   ++VAT VA  G+D+ +   V  Y    N    +   GR  
Sbjct  436  ---ERDW--VLNEFKTGKSPIMVATDVASRGIDVRNITHVFNYDYPNNSEDYIHRIGRTG  490

Query  473  RADQSVYAF-VATEGSRELKRELIN  496
            RA Q   A  + T  +++  R+L+N
Sbjct  491  RAGQKGTAITLFTTDNQKQARDLVN  515


>sp|Q5RC67|DDX23_PONAB Probable ATP-dependent RNA helicase DDX23 
OS=Pongo abelii OX=9601 GN=DDX23 PE=2 SV=1
Length=820

 Score = 38.1 bits (87),  Expect = 0.32, Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 56/110 (51%), Gaps = 8/110 (7%)

Query  383  LLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE--VIQKFQDGTLNLLVATSV  440
            +++++ Q++G    D+ A+ L   G ++ + H  +  +Q    +   + G  ++LVAT V
Sbjct  667  IIIFVNQKKG---CDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDV  723

Query  441  AEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYA--FVATEGS  487
            A  G+DI   ++VV Y +  N    +   GR  RA +S  A  F+  E S
Sbjct  724  AGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDS  773


>sp|A8AJ07|UVRB_CITK8 UvrABC system protein B OS=Citrobacter koseri 
(strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) OX=290338 
GN=uvrB PE=3 SV=1
Length=673

 Score = 38.1 bits (87),  Expect = 0.32, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  484  ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  542


>sp|Q7NJH7|UVRB_GLOVI UvrABC system protein B OS=Gloeobacter violaceus 
(strain ATCC 29082 / PCC 7421) OX=251221 GN=uvrB PE=3 
SV=1
Length=680

 Score = 38.1 bits (87),  Expect = 0.32, Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E++Q  + G  ++L+  ++  EGLD+P  ++V      + G L  E S++Q  GRA
Sbjct  499  EILQALRQGDFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRA  554


>sp|Q54G57|ASCC3_DICDI Activating signal cointegrator 1 complex 
subunit 3 OS=Dictyostelium discoideum OX=44689 GN=ascc3 PE=3 
SV=1
Length=2195

 Score = 38.1 bits (87),  Expect = 0.32, Method: Compositional matrix adjust.
 Identities = 45/175 (26%), Positives = 78/175 (45%), Gaps = 38/175 (22%)

Query  17   GKNIIIWLPTGAGKTRAAAYVAKRHLET---------VDGAKVVVLVNRVHLVTQHGEEF  67
             +NI+I  PTGAGKT  A       +E+          D  K++ +     L ++  E+F
Sbjct  498  NENILISAPTGAGKTNIALLTILHEIESNINPYGYLDKDNFKIIYIAPLKALASEMVEKF  557

Query  68   RRMLDGRWTVTT-LSGDMGPRAGFGHLARCHDLLICTAEL--LQMALTSPE-------EE  117
               L     V+  L+GDM                +   EL   Q+ +T+PE       + 
Sbjct  558  SNSLKYLGIVSKELTGDMQ---------------LTQKELKETQIIVTTPEKWDVITRKS  602

Query  118  EHVELT-VFSLIVVDECH--HTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS  169
              V LT +  LI++DE H  H  +  V   I+++ L  +++  Q + +++GL+A+
Sbjct  603  SDVALTKLVRLIIIDEIHLLHEERGPVLECIVARTLR-QVETTQEMIRIVGLSAT  656


>sp|A8WK63|RECQ1_CAEBR Putative ATP-dependent DNA helicase Q1 
OS=Caenorhabditis briggsae OX=6238 GN=CBG24191 PE=3 SV=1
Length=618

 Score = 38.1 bits (87),  Expect = 0.33, Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 17/135 (13%)

Query  341  LATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRA  400
            L   G E+  +E + + ++R+FS      GII+  +R     L       + L+   IRA
Sbjct  286  LTKPGSEDECVEKIVRTIKRKFSGKT---GIIYCLSRNDCEKL------AKSLKANGIRA  336

Query  401  QLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT  460
            +            +M   D+    QK+  G + ++VAT     G+D P    V+ + L  
Sbjct  337  K--------HYHAYMEPVDRSAAHQKWVSGEIQVIVATVAFGMGIDKPDVRFVIHHSLPK  388

Query  461  NEISMVQARGRARAD  475
            +  +  Q  GRA  D
Sbjct  389  SIENYYQESGRAGRD  403


>sp|A1CX72|PRP28_NEOFI Pre-mRNA-splicing ATP-dependent RNA helicase 
prp28 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 
3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) 
OX=331117 GN=prp28 PE=3 SV=1
Length=796

 Score = 38.1 bits (87),  Expect = 0.33, Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 56/107 (52%), Gaps = 8/107 (7%)

Query  407  GNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
            G SS + H   TQ  ++  +   ++G+ ++LVAT +A  G+D+P  ++VV + +  +  S
Sbjct  658  GFSSVTLHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMANSIES  717

Query  465  MVQARGR-ARADQSVYA--FVATEGSR---ELKRELINEALETLMEQ  505
                 GR  RA +S  A  F+  E +    +LK+ L+   +  + E+
Sbjct  718  YTHRIGRTGRAGKSGVAITFLGNEDADVMYDLKQMLMKSPISRVPEE  764


>sp|O59025|HELS_PYRHO ATP-dependent DNA helicase Hel308 OS=Pyrococcus 
horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 
/ NBRC 100139 / OT-3) OX=70601 GN=hel308 PE=3 SV=1
Length=715

 Score = 38.1 bits (87),  Expect = 0.33, Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 71/161 (44%), Gaps = 21/161 (13%)

Query  15   LEGKNIIIWLPTGAGKTRAAAY-VAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDG  73
            L+G+N +I +PT +GKT  A   +  R L+  +G K V LV    L  +  +EF+   + 
Sbjct  37   LKGENALIAIPTASGKTLIAEIAIVNRLLK--EGGKAVYLVPLKALAEEKFKEFKDWEEL  94

Query  74   RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC  133
               V   +GD   +         +D++I TAE     L          +    ++VVDE 
Sbjct  95   GLKVAMATGDYDSK---DEWLGGYDIIIATAEKFDSLLRHGSS----WIRNVKVLVVDEI  147

Query  134  H---HTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPG  171
            H      +      I++Q     L RA    Q++GL+A+ G
Sbjct  148  HLIGSRDRGATLEFIITQM----LNRA----QIIGLSATIG  180


>sp|A7E436|DBP8_SCLS1 ATP-dependent RNA helicase dbp8 OS=Sclerotinia 
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 
GN=dbp8 PE=3 SV=1
Length=540

 Score = 37.7 bits (86),  Expect = 0.33, Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 34/63 (54%), Gaps = 1/63 (2%)

Query  413  THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-  471
            + + QR + + + +F+     +LVAT VA  GLDIP   +V+ Y +  +    +   GR 
Sbjct  398  SKLPQRQRIDNLGRFRASAARILVATDVAARGLDIPEVGLVINYDVPRDPDDYIHRVGRT  457

Query  472  ARA  474
            ARA
Sbjct  458  ARA  460


>sp|Q03JK4|UVRB_STRTD UvrABC system protein B OS=Streptococcus 
thermophilus (strain ATCC BAA-491 / LMD-9) OX=322159 GN=uvrB 
PE=3 SV=1
Length=668

 Score = 38.1 bits (87),  Expect = 0.33, Method: Compositional matrix adjust.
 Identities = 24/108 (22%), Positives = 49/108 (45%), Gaps = 7/108 (6%)

Query  370  GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD  429
            G I  RT +     +  L ++      D   ++  G       + +   ++ E+I+  + 
Sbjct  446  GEINARTEKGERVFVTTLTKKMAEDLTDYLKEM--GVKVKYMHSDIKTLERTEIIRDLRL  503

Query  430  GTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            G  ++L+  ++  EG+D+P  ++V      + G L NE  ++Q  GRA
Sbjct  504  GVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRA  551


>sp|Q1C942|UVRB_YERPA UvrABC system protein B OS=Yersinia pestis 
bv. Antiqua (strain Antiqua) OX=360102 GN=uvrB PE=3 SV=1
Length=671

 Score = 38.1 bits (87),  Expect = 0.33, Method: Compositional matrix adjust.
 Identities = 19/56 (34%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  487  EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  542


>sp|A4TNQ1|UVRB_YERPP UvrABC system protein B OS=Yersinia pestis 
(strain Pestoides F) OX=386656 GN=uvrB PE=3 SV=1
Length=671

 Score = 38.1 bits (87),  Expect = 0.33, Method: Compositional matrix adjust.
 Identities = 19/56 (34%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  487  EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  542


>sp|Q1CFQ8|UVRB_YERPN UvrABC system protein B OS=Yersinia pestis 
bv. Antiqua (strain Nepal516) OX=377628 GN=uvrB PE=3 SV=1
Length=671

 Score = 38.1 bits (87),  Expect = 0.33, Method: Compositional matrix adjust.
 Identities = 19/56 (34%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  487  EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  542


>sp|A9R3D3|UVRB_YERPG UvrABC system protein B OS=Yersinia pestis 
bv. Antiqua (strain Angola) OX=349746 GN=uvrB PE=3 SV=1
Length=671

 Score = 38.1 bits (87),  Expect = 0.33, Method: Compositional matrix adjust.
 Identities = 19/56 (34%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  487  EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  542


>sp|Q8ZGW7|UVRB_YERPE UvrABC system protein B OS=Yersinia pestis 
OX=632 GN=uvrB PE=3 SV=1
Length=671

 Score = 38.1 bits (87),  Expect = 0.33, Method: Compositional matrix adjust.
 Identities = 19/56 (34%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  487  EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  542


>sp|Q5M3D5|UVRB_STRT2 UvrABC system protein B OS=Streptococcus 
thermophilus (strain ATCC BAA-250 / LMG 18311) OX=264199 GN=uvrB 
PE=3 SV=1
Length=668

 Score = 38.1 bits (87),  Expect = 0.34, Method: Compositional matrix adjust.
 Identities = 24/108 (22%), Positives = 49/108 (45%), Gaps = 7/108 (6%)

Query  370  GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD  429
            G I  RT +     +  L ++      D   ++  G       + +   ++ E+I+  + 
Sbjct  446  GEINARTEKGERVFVTTLTKKMAEDLTDYLKEM--GVKVKYMHSDIKTLERTEIIRDLRL  503

Query  430  GTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            G  ++L+  ++  EG+D+P  ++V      + G L NE  ++Q  GRA
Sbjct  504  GVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRA  551


>sp|Q5LYS1|UVRB_STRT1 UvrABC system protein B OS=Streptococcus 
thermophilus (strain CNRZ 1066) OX=299768 GN=uvrB PE=3 SV=1
Length=668

 Score = 38.1 bits (87),  Expect = 0.34, Method: Compositional matrix adjust.
 Identities = 24/108 (22%), Positives = 49/108 (45%), Gaps = 7/108 (6%)

Query  370  GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD  429
            G I  RT +     +  L ++      D   ++  G       + +   ++ E+I+  + 
Sbjct  446  GEINARTEKGERVFVTTLTKKMAEDLTDYLKEM--GVKVKYMHSDIKTLERTEIIRDLRL  503

Query  430  GTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            G  ++L+  ++  EG+D+P  ++V      + G L NE  ++Q  GRA
Sbjct  504  GVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRA  551


>sp|A7E449|DBP2_SCLS1 ATP-dependent RNA helicase dbp2 OS=Sclerotinia 
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 
GN=dbp2 PE=3 SV=1
Length=572

 Score = 37.7 bits (86),  Expect = 0.34, Method: Compositional matrix adjust.
 Identities = 40/145 (28%), Positives = 70/145 (48%), Gaps = 21/145 (14%)

Query  354  LEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQST  413
            LEKI++ + +     + +IFT T++ A  +  +L+Q  G   + I        G+  Q+ 
Sbjct  388  LEKIMEDKDN-----KILIFTGTKRVADDITRFLRQD-GWPALSIH-------GDKQQN-  433

Query  414  HMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-A  472
               +RD   V+ +F+ G   ++VAT VA  G+D+ +   V  Y    N    +   GR  
Sbjct  434  ---ERDW--VLNEFKTGKSPIMVATDVASRGIDVRNITHVFNYDYPNNSEDYIHRIGRTG  488

Query  473  RADQSVYAF-VATEGSRELKRELIN  496
            RA Q   A  + T  +++  R+L+N
Sbjct  489  RAGQKGTAITLFTTDNQKQARDLVN  513


>sp|Q7S5R1|DBP3_NEUCR ATP-dependent RNA helicase dbp-3 OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / 
DSM 1257 / FGSC 987) OX=367110 GN=dbp-3 PE=3 SV=1
Length=614

 Score = 37.7 bits (86),  Expect = 0.34, Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 2/56 (4%)

Query  401  QLLIGAGNSSQSTHMTQRDQQEV--IQKFQDGTLNLLVATSVAEEGLDIPHCNVVV  454
            Q L   G    S H   R  Q    ++ F+ GT  +LVAT VA  GLDIP   +V+
Sbjct  468  QFLSRKGIKVASIHGDLRQDQRTRSLEAFKSGTTTVLVATDVAARGLDIPEVKLVI  523


>sp|Q86B47|Y8611_DROME Probable ATP-dependent RNA helicase CG8611 
OS=Drosophila melanogaster OX=7227 GN=CG8611 PE=1 SV=1
Length=975

 Score = 38.1 bits (87),  Expect = 0.34, Method: Compositional matrix adjust.
 Identities = 23/61 (38%), Positives = 33/61 (54%), Gaps = 1/61 (2%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR  473
            MTQ ++Q V + F+D    +L+AT V   G+D+P   +VV+Y         V   GR AR
Sbjct  688  MTQTERQGVFRGFRDCASCVLLATDVVGRGIDVPDIKLVVQYTPPQTTADFVHRVGRTAR  747

Query  474  A  474
            A
Sbjct  748  A  748


 Score = 34.3 bits (77),  Expect = 5.5, Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 64/146 (44%), Gaps = 22/146 (15%)

Query  2    ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYV-------AKRHLETVDGAKVVVLV  54
            EL S Q + I   L+GK++++   TG+GKT A A          +  ++  DG   +V+V
Sbjct  350  ELTSVQQKTIPEVLQGKDVLVRSQTGSGKTLAYALPLVELLQKQQPRIQRKDGVLALVIV  409

Query  55   NRVHLVTQHGEEFRRMLDG-RWTVT-TLSGDMGPRAGFGHLARCHDLLICTA-----ELL  107
                LV Q  E  ++++    W V  +L G    ++    L +  ++LI T       LL
Sbjct  410  PTRELVMQTYELIQKLVKPYTWIVPGSLLGGESRKSEKARLRKGINILIGTPGRLVDHLL  469

Query  108  QMALTSPEEEEHVELTVFSLIVVDEC  133
              A          +LT    +++DE 
Sbjct  470  HTA--------SFKLTKLQFLILDEA  487


>sp|C4K6N8|UVRB_HAMD5 UvrABC system protein B OS=Hamiltonella 
defensa subsp. Acyrthosiphon pisum (strain 5AT) OX=572265 GN=uvrB 
PE=3 SV=1
Length=671

 Score = 38.1 bits (87),  Expect = 0.34, Method: Compositional matrix adjust.
 Identities = 19/56 (34%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  487  EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  542


>sp|Q9BUQ8|DDX23_HUMAN Probable ATP-dependent RNA helicase DDX23 
OS=Homo sapiens OX=9606 GN=DDX23 PE=1 SV=3
Length=820

 Score = 38.1 bits (87),  Expect = 0.34, Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 56/110 (51%), Gaps = 8/110 (7%)

Query  383  LLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE--VIQKFQDGTLNLLVATSV  440
            +++++ Q++G    D+ A+ L   G ++ + H  +  +Q    +   + G  ++LVAT V
Sbjct  667  IIIFVNQKKG---CDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDV  723

Query  441  AEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYA--FVATEGS  487
            A  G+DI   ++VV Y +  N    +   GR  RA +S  A  F+  E S
Sbjct  724  AGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDS  773


>sp|Q31ES7|UVRB_HYDCU UvrABC system protein B OS=Hydrogenovibrio 
crunogenus (strain DSM 25203 / XCL-2) OX=317025 GN=uvrB PE=3 
SV=1
Length=678

 Score = 38.1 bits (87),  Expect = 0.34, Method: Compositional matrix adjust.
 Identities = 19/56 (34%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + G  ++LV  ++  EGLDIP  ++V      + G L ++ S++Q  GRA
Sbjct  486  EIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSDRSLIQTIGRA  541


>sp|A8GBD1|UVRB_SERP5 UvrABC system protein B OS=Serratia proteamaculans 
(strain 568) OX=399741 GN=uvrB PE=3 SV=1
Length=670

 Score = 37.7 bits (86),  Expect = 0.35, Method: Compositional matrix adjust.
 Identities = 19/56 (34%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  487  EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  542


>sp|B1JSR9|UVRB_YERPY UvrABC system protein B OS=Yersinia pseudotuberculosis 
serotype O:3 (strain YPIII) OX=502800 GN=uvrB 
PE=3 SV=1
Length=671

 Score = 37.7 bits (86),  Expect = 0.35, Method: Compositional matrix adjust.
 Identities = 19/56 (34%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  487  EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  542


>sp|Q66D62|UVRB_YERPS UvrABC system protein B OS=Yersinia pseudotuberculosis 
serotype I (strain IP32953) OX=273123 GN=uvrB 
PE=3 SV=1
Length=671

 Score = 37.7 bits (86),  Expect = 0.35, Method: Compositional matrix adjust.
 Identities = 19/56 (34%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  487  EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  542


>sp|B2K8T5|UVRB_YERPB UvrABC system protein B OS=Yersinia pseudotuberculosis 
serotype IB (strain PB1/+) OX=502801 GN=uvrB 
PE=3 SV=1
Length=671

 Score = 37.7 bits (86),  Expect = 0.35, Method: Compositional matrix adjust.
 Identities = 19/56 (34%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  487  EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  542


>sp|A7FKM4|UVRB_YERP3 UvrABC system protein B OS=Yersinia pseudotuberculosis 
serotype O:1b (strain IP 31758) OX=349747 GN=uvrB 
PE=3 SV=1
Length=671

 Score = 37.7 bits (86),  Expect = 0.35, Method: Compositional matrix adjust.
 Identities = 19/56 (34%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  487  EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  542


>sp|Q2UQI6|DRS1_ASPOR ATP-dependent RNA helicase drs1 OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=drs1 
PE=3 SV=2
Length=820

 Score = 38.1 bits (87),  Expect = 0.35, Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 63/124 (51%), Gaps = 16/124 (13%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            R I+F R ++ AH + +      GL  + ++A  L G+        M+Q  +   ++ F+
Sbjct  549  RVIVFFRQKKEAHRVRIAF----GL--LGLKAAELHGS--------MSQEQRIRSVENFR  594

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRY-GLLTNEISMVQARGRARADQSVYA-FVATEG  486
            +G ++ L+AT +A  GLDI     V+ Y    ++EI + +    ARA +S  A  +A E 
Sbjct  595  EGKVSFLLATDLAARGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEP  654

Query  487  SREL  490
             R++
Sbjct  655  DRKV  658


>sp|Q7MM80|UVRB_VIBVY UvrABC system protein B OS=Vibrio vulnificus 
(strain YJ016) OX=196600 GN=uvrB PE=3 SV=2
Length=676

 Score = 37.7 bits (86),  Expect = 0.35, Method: Compositional matrix adjust.
 Identities = 19/56 (34%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  488  EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  543


>sp|Q8D891|UVRB_VIBVU UvrABC system protein B OS=Vibrio vulnificus 
(strain CMCP6) OX=216895 GN=uvrB PE=3 SV=1
Length=676

 Score = 37.7 bits (86),  Expect = 0.35, Method: Compositional matrix adjust.
 Identities = 19/56 (34%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  488  EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  543


>sp|Q3MSQ8|DDX4_PELLE Probable ATP-dependent RNA helicase DDX4 
OS=Pelophylax lessonae OX=45623 GN=ddx4 PE=2 SV=1
Length=724

 Score = 37.7 bits (86),  Expect = 0.36, Method: Compositional matrix adjust.
 Identities = 30/127 (24%), Positives = 60/127 (47%), Gaps = 22/127 (17%)

Query  345  GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI  404
            G ++  +E+L++I         S R ++F +T++ A  +  +L Q++   T         
Sbjct  524  GKKDKLMEILQEI--------GSERTMVFVKTKKKADFIATFLCQEKVPST---------  566

Query  405  GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
                 S      Q++++  ++ F+ G   ++VATSVA  GLDI + + V+ + +  +   
Sbjct  567  -----SIHGDREQKERETALRDFRTGQCPVIVATSVAARGLDIENVSYVINFDIPDDIDE  621

Query  465  MVQARGR  471
             V   GR
Sbjct  622  YVHRIGR  628


>sp|Q9NQI0|DDX4_HUMAN Probable ATP-dependent RNA helicase DDX4 
OS=Homo sapiens OX=9606 GN=DDX4 PE=1 SV=2
Length=724

 Score = 37.7 bits (86),  Expect = 0.36, Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 48/103 (47%), Gaps = 14/103 (14%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            R ++F  T++ A  +  +L Q++ + T  I                  QR++++ +  F+
Sbjct  542  RTMVFVETKKKADFIATFLCQEK-ISTTSIHGD-------------REQREREQALGDFR  587

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
             G   +LVATSVA  GLDI +   V+ + L +     V   GR
Sbjct  588  FGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGR  630


>sp|Q5JGV6|HELS_THEKO ATP-dependent DNA helicase Hel308 OS=Thermococcus 
kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) 
OX=69014 GN=hel308 PE=3 SV=1
Length=1125

 Score = 38.1 bits (87),  Expect = 0.36, Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 67/159 (42%), Gaps = 13/159 (8%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGR  74
            LEGKN+++ +PT +GKT  +  V    L + +G K V LV    L  +   EF+      
Sbjct  37   LEGKNLVLAIPTASGKTLVSEIVMVNKLLS-EGGKAVYLVPLKALAEEKYREFKEWEVLG  95

Query  75   WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECH  134
              V   +GD      +  L R +D+++ TAE     L          +    L+V DE H
Sbjct  96   LRVAATTGDYDSTDEW--LGR-YDIIVATAEKFDSLLRHGAS----WIKDVKLVVADEVH  148

Query  135  HTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTG  173
                  + +      LE+ L       Q+L L+A+ G  
Sbjct  149  -----LIGSYDRGATLEMILTHMLGKAQILALSATVGNA  182


>sp|O02494|IF4A_CRYPV Eukaryotic initiation factor 4A OS=Cryptosporidium 
parvum OX=5807 GN=EIF4-A PE=2 SV=1
Length=405

 Score = 37.7 bits (86),  Expect = 0.36, Method: Compositional matrix adjust.
 Identities = 16/64 (25%), Positives = 37/64 (58%), Gaps = 0/64 (0%)

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
            SS    M Q+D++ ++++F+ G+  +L+ T +   G+D+   ++V+ Y L  +  + +  
Sbjct  298  SSMHGDMDQKDREVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPVSPETYIHR  357

Query  469  RGRA  472
             GR+
Sbjct  358  IGRS  361


>sp|Q8G5L9|UVRB_BIFLO UvrABC system protein B OS=Bifidobacterium 
longum (strain NCC 2705) OX=206672 GN=uvrB PE=3 SV=1
Length=703

 Score = 37.7 bits (86),  Expect = 0.36, Method: Compositional matrix adjust.
 Identities = 21/82 (26%), Positives = 45/82 (55%), Gaps = 5/82 (6%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRARADQ  476
            E+++  ++G ++++V  ++  EGLD+P  ++V      + G L +  S++Q  GRA  + 
Sbjct  492  ELLRMLREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTIGRAARNV  551

Query  477  SVYAFVATEGSRELKRELINEA  498
            S    +  + + E  R+ I+E 
Sbjct  552  SGTVIMYADETTEAMRQAIDET  573


>sp|Q8RGR2|UVRB_FUSNN UvrABC system protein B OS=Fusobacterium 
nucleatum subsp. nucleatum (strain ATCC 25586 / DSM 15643 / 
BCRC 10681 / CIP 101130 / JCM 8532 / KCTC 2640 / LMG 13131 
/ VPI 4355) OX=190304 GN=uvrB PE=3 SV=1
Length=663

 Score = 37.7 bits (86),  Expect = 0.36, Method: Compositional matrix adjust.
 Identities = 22/77 (29%), Positives = 42/77 (55%), Gaps = 9/77 (12%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRARADQ  476
            E+I+  + G +++++  ++  EGLDIP  ++V      + G L +  S+VQ  GRA  + 
Sbjct  488  EIIRALRKGEIDVIIGINLLREGLDIPEVSLVAIMEADKEGFLRSRRSLVQTIGRAARNV  547

Query  477  S----VYAFVATEGSRE  489
                 +YA + T+  +E
Sbjct  548  EGRVILYADIMTDSMKE  564


>sp|Q8DHC6|UVRB_THEVB UvrABC system protein B OS=Thermosynechococcus 
vestitus (strain NIES-2133 / IAM M-273 / BP-1) OX=197221 
GN=uvrB PE=3 SV=1
Length=668

 Score = 37.7 bits (86),  Expect = 0.36, Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 9/73 (12%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA----  472
            E+++  + G  ++L+  ++  EGLD+P  ++V      + G L  E S++Q  GRA    
Sbjct  486  EILEALRQGDFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAARHV  545

Query  473  RADQSVYAFVATE  485
            R    +YA   TE
Sbjct  546  RGQAILYADTLTE  558


>sp|A1JSC3|UVRB_YERE8 UvrABC system protein B OS=Yersinia enterocolitica 
serotype O:8 / biotype 1B (strain NCTC 13174 / 8081) 
OX=393305 GN=uvrB PE=3 SV=1
Length=670

 Score = 37.7 bits (86),  Expect = 0.37, Method: Compositional matrix adjust.
 Identities = 19/56 (34%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  487  EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  542


>sp|C6DDU0|UVRB_PECCP UvrABC system protein B OS=Pectobacterium 
carotovorum subsp. carotovorum (strain PC1) OX=561230 GN=uvrB 
PE=3 SV=1
Length=670

 Score = 37.7 bits (86),  Expect = 0.37, Method: Compositional matrix adjust.
 Identities = 19/56 (34%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  487  EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  542


>sp|B2VBW9|UVRB_ERWT9 UvrABC system protein B OS=Erwinia tasmaniensis 
(strain DSM 17950 / CFBP 7177 / CIP 109463 / NCPPB 4357 
/ Et1/99) OX=465817 GN=uvrB PE=3 SV=1
Length=674

 Score = 37.7 bits (86),  Expect = 0.37, Method: Compositional matrix adjust.
 Identities = 19/56 (34%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  487  EIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  542


>sp|Q6D3C4|UVRB_PECAS UvrABC system protein B OS=Pectobacterium 
atrosepticum (strain SCRI 1043 / ATCC BAA-672) OX=218491 GN=uvrB 
PE=3 SV=1
Length=670

 Score = 37.7 bits (86),  Expect = 0.38, Method: Compositional matrix adjust.
 Identities = 19/56 (34%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  487  EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  542


>sp|O75417|DPOLQ_HUMAN DNA polymerase theta OS=Homo sapiens OX=9606 
GN=POLQ PE=1 SV=2
Length=2590

 Score = 38.1 bits (87),  Expect = 0.38, Method: Compositional matrix adjust.
 Identities = 38/141 (27%), Positives = 60/141 (43%), Gaps = 22/141 (16%)

Query  4    RSYQWE----VIMPALEGKNIIIWLPTGAGKTRAAA-YVAKRHLETVDGAKVV-----VL  53
            + ++W+    ++   LEGKN++   PT AGKT  A   + KR LE    A  +     V 
Sbjct  91   KMFEWQAECLLLGQVLEGKNLVYSAPTSAGKTLVAELLILKRVLEMRKKALFILPFVSVA  150

Query  54   VNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTS  113
              + + +    +E    +DG        G   P   F  L    D+ +CT E     +  
Sbjct  151  KEKKYYLQSLFQEVGIKVDGYM------GSTSPSRHFSSL----DIAVCTIERANGLINR  200

Query  114  PEEEEHVELTVFSLIVVDECH  134
              EE  ++L    ++VVDE H
Sbjct  201  LIEENKMDL--LGMVVVDELH  219


>sp|Q5ZI74|DHX30_CHICK ATP-dependent RNA helicase DHX30 OS=Gallus 
gallus OX=9031 GN=DHX30 PE=2 SV=1
Length=1231

 Score = 38.1 bits (87),  Expect = 0.38, Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 76/172 (44%), Gaps = 29/172 (17%)

Query  382  SLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ-----STHMTQRDQQEVIQKFQDGTLNLLV  436
             +L +L   Q ++ V  R   ++G+ NS        +++   DQQ + Q+   G   +++
Sbjct  713  GILCFLPGWQEIKGVQQRLLEMLGSQNSRYLVLPVHSNIPMMDQQNIFQRPPPGVRKIVL  772

Query  437  ATSVAEEGLDIPHCNVVV--------RYGLLT----------NEISMVQARGRARADQSV  478
            AT++AE  + I     VV        RY L T          ++ ++VQ RGRA   QS 
Sbjct  773  ATNIAETSITINDIVHVVDSGTHKEERYDLKTKVSCLETVWVSKSNVVQRRGRAGRCQSG  832

Query  479  YAFVATEGSRELKR------ELINEALETLMEQAVAAVQKMDQAEYQAKIRD  524
            +A+     SR  K       E++   LE L+ QA   + +    E+ +K  D
Sbjct  833  FAYHLFPRSRLDKMPTYQVPEILRTPLENLVVQAKIHMPEKTAVEFLSKALD  884


>sp|A6SCT6|DBP3_BOTFB ATP-dependent RNA helicase dbp3 OS=Botryotinia 
fuckeliana (strain B05.10) OX=332648 GN=dbp3 PE=3 SV=2
Length=603

 Score = 37.7 bits (86),  Expect = 0.39, Method: Compositional matrix adjust.
 Identities = 26/109 (24%), Positives = 50/109 (46%), Gaps = 14/109 (13%)

Query  346  PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
            P + +  +++ + Q Q  S    R ++F   ++ A  +  +++Q+ G +   I   L   
Sbjct  418  PRDKEYRLMQLLKQYQSGSQKDDRILVFCLYKKEATRVESFIRQK-GFRVAGIHGDL---  473

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV  454
                      +Q  +   ++ F+ G   +LVAT VA  GLDIP   +V+
Sbjct  474  ----------SQEQRTRSLEAFKSGNTPVLVATDVAARGLDIPAVKLVI  512


>sp|A3Q9R3|RHLB_SHELP ATP-dependent RNA helicase RhlB OS=Shewanella 
loihica (strain ATCC BAA-1088 / PV-4) OX=323850 GN=rhlB 
PE=3 SV=1
Length=435

 Score = 37.7 bits (86),  Expect = 0.39, Method: Compositional matrix adjust.
 Identities = 36/129 (28%), Positives = 56/129 (43%), Gaps = 15/129 (12%)

Query  349  PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN  408
            P +E   ++L          + I+F+ T+ S  +L  W      L+    R  LL G   
Sbjct  238  PSMEDKMRLLLTLIEEDWPEKAIVFSNTKHSCENL--WAH----LEGDGHRVGLLTG---  288

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
                  + Q+ +  ++++F  G L++LVAT VA  GL I   + V  Y L  +    V  
Sbjct  289  -----DVPQKKRIRILEQFTKGELDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHR  343

Query  469  RGR-ARADQ  476
             GR  RA Q
Sbjct  344  IGRTGRAGQ  352


>sp|A1DG51|DBP3_NEOFI ATP-dependent RNA helicase dbp3 OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / 
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dbp3 
PE=3 SV=1
Length=503

 Score = 37.7 bits (86),  Expect = 0.39, Method: Compositional matrix adjust.
 Identities = 28/85 (33%), Positives = 41/85 (48%), Gaps = 4/85 (5%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL-LTNE--ISMVQARGR  471
            + Q ++ + ++ F+ G   +LVAT VA  GLDIP   +V+     LT E  +  +   GR
Sbjct  372  LNQHERFKSLEAFKTGAATVLVATDVAARGLDIPSVKLVINVTFPLTVEDYVHRIGRTGR  431

Query  472  ARADQSVYAFVATEGSRELKRELIN  496
            A AD        TE  +     LIN
Sbjct  432  AGADGHAITLF-TETDKAQSGALIN  455


>sp|B4ESU7|UVRB_PROMH UvrABC system protein B OS=Proteus mirabilis 
(strain HI4320) OX=529507 GN=uvrB PE=3 SV=1
Length=669

 Score = 37.7 bits (86),  Expect = 0.40, Method: Compositional matrix adjust.
 Identities = 19/56 (34%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  487  EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  542


>sp|A4R5B8|DBP10_PYRO7 ATP-dependent RNA helicase DBP10 OS=Pyricularia 
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 
GN=DBP10 PE=3 SV=1
Length=914

 Score = 37.7 bits (86),  Expect = 0.40, Method: Compositional matrix adjust.
 Identities = 21/59 (36%), Positives = 30/59 (51%), Gaps = 1/59 (2%)

Query  424  IQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF  481
            ++ F+ G  N+LV T VA  G+DIP    V+ Y         V   GR ARA Q  +++
Sbjct  408  VEDFRRGKTNILVVTDVAARGIDIPVLANVINYDFCDQPKVFVHRVGRTARAGQKGWSY  466


>sp|Q5E6B5|UVRB_ALIF1 UvrABC system protein B OS=Aliivibrio fischeri 
(strain ATCC 700601 / ES114) OX=312309 GN=uvrB PE=3 SV=1
Length=676

 Score = 37.7 bits (86),  Expect = 0.40, Method: Compositional matrix adjust.
 Identities = 19/56 (34%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  488  EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  543


>sp|B2TQS8|UVRB_CLOBB UvrABC system protein B OS=Clostridium botulinum 
(strain Eklund 17B / Type B) OX=935198 GN=uvrB PE=3 
SV=1
Length=657

 Score = 37.7 bits (86),  Expect = 0.40, Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 44/82 (54%), Gaps = 6/82 (7%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGR-A  472
            ++ ++I+  + G  ++LV  ++  EGLDIP   +V      + G L +E S++Q  GR A
Sbjct  482  ERMKIIRDLRLGEYDVLVGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGRAA  541

Query  473  RADQSVYAFVATEGSRELKREL  494
            R  +S     A   ++ +K+ +
Sbjct  542  RNSESKVIMYADNITKSMKKAI  563


>sp|Q7N6Q1|UVRB_PHOLL UvrABC system protein B OS=Photorhabdus 
laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / 
TT01) OX=243265 GN=uvrB PE=3 SV=1
Length=669

 Score = 37.7 bits (86),  Expect = 0.40, Method: Compositional matrix adjust.
 Identities = 19/56 (34%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  487  EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  542


>sp|A8ACT3|RHLB_CITK8 ATP-dependent RNA helicase RhlB OS=Citrobacter 
koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) 
OX=290338 GN=rhlB PE=3 SV=1
Length=421

 Score = 37.4 bits (85),  Expect = 0.41, Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 57/133 (43%), Gaps = 19/133 (14%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +++ ++      R I+F  T+     +  W      L     R  LL G    
Sbjct  243  KMRLLQTLIEEEWPD----RAIVFANTKHRCEDI--WGH----LAADGHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q+ +  ++ +F  G L++LVAT VA  GL IP    V  Y L  +    V   
Sbjct  289  ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI  344

Query  470  GR-ARADQSVYAF  481
            GR  RA  S ++ 
Sbjct  345  GRTGRAGASGHSI  357


>sp|A7EYW0|DBP3_SCLS1 ATP-dependent RNA helicase dbp3 OS=Sclerotinia 
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 
GN=dbp3 PE=3 SV=2
Length=596

 Score = 37.7 bits (86),  Expect = 0.41, Method: Compositional matrix adjust.
 Identities = 26/109 (24%), Positives = 50/109 (46%), Gaps = 14/109 (13%)

Query  346  PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
            P + +  +++ + Q Q  S    R ++F   ++ A  +  +++Q+ G +   I   L   
Sbjct  411  PRDKEYRLMQLLKQYQSGSQKDDRILVFCLYKKEATRVEGFIRQK-GFRVAGIHGDL---  466

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV  454
                      +Q  +   ++ F+ G   +LVAT VA  GLDIP   +V+
Sbjct  467  ----------SQEQRTRSLEAFKSGNTPVLVATDVAARGLDIPAVKLVI  505


>sp|A7I3X8|UVRB_CAMHC UvrABC system protein B OS=Campylobacter 
hominis (strain ATCC BAA-381 / DSM 21671 / CCUG 45161 / LMG 
19568 / NCTC 13146 / CH001A) OX=360107 GN=uvrB PE=3 SV=1
Length=657

 Score = 37.7 bits (86),  Expect = 0.41, Method: Compositional matrix adjust.
 Identities = 16/59 (27%), Positives = 34/59 (58%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+I+  + G  ++L+  ++  EGLD+P  +++      + G L +  S++Q  GRA
Sbjct  486  ERNELIRGLRTGDFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSRTSLIQTMGRA  544


>sp|Q8F8A9|UVRB_LEPIN UvrABC system protein B OS=Leptospira interrogans 
serogroup Icterohaemorrhagiae serovar Lai (strain 
56601) OX=189518 GN=uvrB PE=3 SV=1
Length=666

 Score = 37.7 bits (86),  Expect = 0.41, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 33/59 (56%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            D+  +I+  + G  ++L+  ++  EGLDIP  ++V      + G L N  S++Q  GRA
Sbjct  482  DRVGIIRDLRKGIYDVLIGINLLREGLDIPEVSLVAILDADKEGFLRNYKSLIQTIGRA  540


>sp|Q72N95|UVRB_LEPIC UvrABC system protein B OS=Leptospira interrogans 
serogroup Icterohaemorrhagiae serovar copenhageni 
(strain Fiocruz L1-130) OX=267671 GN=uvrB PE=3 SV=1
Length=666

 Score = 37.7 bits (86),  Expect = 0.41, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 33/59 (56%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            D+  +I+  + G  ++L+  ++  EGLDIP  ++V      + G L N  S++Q  GRA
Sbjct  482  DRVGIIRDLRKGIYDVLIGINLLREGLDIPEVSLVAILDADKEGFLRNYKSLIQTIGRA  540


>sp|A3N031|UVRB_ACTP2 UvrABC system protein B OS=Actinobacillus 
pleuropneumoniae serotype 5b (strain L20) OX=416269 GN=uvrB 
PE=3 SV=1
Length=673

 Score = 37.7 bits (86),  Expect = 0.42, Method: Compositional matrix adjust.
 Identities = 19/56 (34%), Positives = 32/56 (57%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I   + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  490  EIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  545


>sp|B2UZZ0|UVRB_CLOBA UvrABC system protein B OS=Clostridium botulinum 
(strain Alaska E43 / Type E3) OX=508767 GN=uvrB PE=3 
SV=1
Length=657

 Score = 37.7 bits (86),  Expect = 0.42, Method: Compositional matrix adjust.
 Identities = 23/80 (29%), Positives = 43/80 (54%), Gaps = 6/80 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGR-A  472
            ++ ++I+  + G  ++LV  ++  EGLDIP   +V      + G L +E S++Q  GR A
Sbjct  482  ERMKIIRDLRLGEYDVLVGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGRAA  541

Query  473  RADQSVYAFVATEGSRELKR  492
            R  +S     A   ++ +K+
Sbjct  542  RNSESKVIMYADNITKSMKK  561


>sp|A8G828|RHLB_SERP5 ATP-dependent RNA helicase RhlB OS=Serratia 
proteamaculans (strain 568) OX=399741 GN=rhlB PE=3 SV=1
Length=428

 Score = 37.4 bits (85),  Expect = 0.43, Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +++ ++      R IIF  T+     +  W      L     R  LL G    
Sbjct  243  KMRLLQTLIEEEWPD----RCIIFANTKHRCEDV--WGH----LAADGHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q+ +  ++  F  G L++LVAT VA  GL IP    V  Y L  +    V   
Sbjct  289  ----DVAQKKRLRILDDFTKGNLDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRI  344

Query  470  GR-ARADQSVYAF  481
            GR  RA +S ++ 
Sbjct  345  GRTGRAGESGHSI  357


>sp|Q9V3C0|DDX41_DROME ATP-dependent RNA helicase abstrakt OS=Drosophila 
melanogaster OX=7227 GN=abs PE=1 SV=1
Length=619

 Score = 37.7 bits (86),  Expect = 0.43, Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 55/102 (54%), Gaps = 10/102 (10%)

Query  377  RQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE---VIQKFQDGTLN  433
            +++A  +L++ +++Q    VD   + L+  G  + + H   +DQ+E    +  ++ G  +
Sbjct  425  QKTAPPVLIFAEKKQ---DVDCIHEYLLLKGVEAVAIH-GGKDQEERSRAVDAYRVGKKD  480

Query  434  LLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGRA  472
            +LVAT VA +GLD P+   V+ Y +   + N +  +   GR+
Sbjct  481  VLVATDVASKGLDFPNVQHVINYDMPDDIENYVHRIGRTGRS  522


>sp|Q5W5U4|DDX4_BOVIN Probable ATP-dependent RNA helicase DDX4 
OS=Bos taurus OX=9913 GN=DDX4 PE=2 SV=1
Length=729

 Score = 37.7 bits (86),  Expect = 0.44, Method: Compositional matrix adjust.
 Identities = 31/130 (24%), Positives = 57/130 (44%), Gaps = 17/130 (13%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            R ++F  T++ A  +  +L Q++ + T  I                  QR++++ +  F+
Sbjct  544  RTMVFVETKKKADFIATFLCQEK-ISTTSIHGD-------------REQREREQALGDFR  589

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGRARADQSVYAFVATE  485
             G   +LVATSVA  GLDI +   V+ + L   +   +  +   GR        +F   E
Sbjct  590  CGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLE  649

Query  486  GSRELKRELI  495
               +L + L+
Sbjct  650  SDSQLAQPLV  659


>sp|Q4UMJ0|MFD_RICFE Transcription-repair-coupling factor OS=Rickettsia 
felis (strain ATCC VR-1525 / URRWXCal2) OX=315456 
GN=mfd PE=3 SV=1
Length=1142

 Score = 37.7 bits (86),  Expect = 0.44, Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 2/78 (3%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN-VVVRYGLLTNEISMVQARGR-A  472
            MT     EV+ +F  G  ++LV+T++ E G+DI   N +V+    +     + Q RGR  
Sbjct  826  MTPSKIDEVMSEFYAGKFDILVSTTIIESGIDIAEANTMVIHKADMLGLSQLYQLRGRIG  885

Query  473  RADQSVYAFVATEGSREL  490
            R     YA++     +++
Sbjct  886  RGKVRGYAYLTVASHKKM  903


>sp|A7EAY2|MAK5_SCLS1 ATP-dependent RNA helicase mak5 OS=Sclerotinia 
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 
GN=mak5 PE=3 SV=1
Length=780

 Score = 37.7 bits (86),  Expect = 0.45, Method: Compositional matrix adjust.
 Identities = 38/112 (34%), Positives = 51/112 (46%), Gaps = 17/112 (15%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            R +IFT +  S   L   LQ      T++I A  L         + M Q+ +   I+KF 
Sbjct  505  RTLIFTNSIHSVRRLTPMLQ------TLNIPAHSL--------HSQMIQKARMRSIEKFS  550

Query  429  --DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQS  477
              + T ++LVAT VA  GLDI    +V+ Y L       V   GR ARA  S
Sbjct  551  RTNNTGSVLVATDVAARGLDIGGVQLVIHYHLPRTADMYVHRSGRTARAAAS  602


>sp|Q9SZB4|RH43_ARATH Putative DEAD-box ATP-dependent RNA helicase 
43 OS=Arabidopsis thaliana OX=3702 GN=RH43 PE=3 SV=1
Length=542

 Score = 37.4 bits (85),  Expect = 0.46, Method: Compositional matrix adjust.
 Identities = 22/69 (32%), Positives = 32/69 (46%), Gaps = 3/69 (4%)

Query  417  QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY---GLLTNEISMVQARGRAR  473
            Q D+   I  F+ G  ++LVAT VA +GLD P    V+ Y   G + N +  +   GR  
Sbjct  384  QEDRDYAISLFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGRCG  443

Query  474  ADQSVYAFV  482
                   F+
Sbjct  444  KTGIATTFI  452


>sp|Q4HZ42|DBP10_GIBZE ATP-dependent RNA helicase DBP10 OS=Gibberella 
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 
/ NRRL 31084 / PH-1) OX=229533 GN=DBP10 PE=3 SV=1
Length=897

 Score = 37.7 bits (86),  Expect = 0.46, Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 56/122 (46%), Gaps = 6/122 (5%)

Query  363  SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQ  420
             S    RG      + + HS +++   +  ++ +   A LLI AG +    +  + Q  +
Sbjct  338  GSKKRKRGADGGSGKPTEHSTIIFTATKHHVEYL---ANLLIYAGFAVSYVYGSLDQTAR  394

Query  421  QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVY  479
            +  ++ F+ G  N+LV T VA  G+DIP    V+ +         V   GR ARA Q  +
Sbjct  395  RIQVEDFRMGKTNILVVTDVAARGIDIPVLANVINFDFPPQPKVFVHRVGRTARAGQRGW  454

Query  480  AF  481
            ++
Sbjct  455  SY  456


>sp|Q84TG1|RH57_ARATH DEAD-box ATP-dependent RNA helicase 57 OS=Arabidopsis 
thaliana OX=3702 GN=RH57 PE=2 SV=1
Length=541

 Score = 37.4 bits (85),  Expect = 0.46, Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 60/129 (47%), Gaps = 9/129 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA--AAYVAKRHLETVDGAKVVVLVNRVHLVTQHG  64
            Q + I   L G+      PTG+GKT A     + K    + DG + V+L     L  Q  
Sbjct  168  QRQAIPILLSGRECFACAPTGSGKTFAFICPMLIKLKRPSTDGIRAVILSPARELAAQTA  227

Query  65   EEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELT  123
             E ++++ G  + +  ++  +   A F  L  C D+LI T   L+ A+ +    + ++L+
Sbjct  228  REGKKLIKGSNFHIRLMTKPLVKTADFSKLW-C-DVLISTPMRLKRAIKA----KKIDLS  281

Query  124  VFSLIVVDE  132
                +V+DE
Sbjct  282  KVEYLVLDE  290


 Score = 37.0 bits (84),  Expect = 0.69, Method: Compositional matrix adjust.
 Identities = 28/121 (23%), Positives = 58/121 (48%), Gaps = 15/121 (12%)

Query  358  LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ  417
            L++ F+ S +P  +IF ++++ A  L         L+  +IRA ++         + +  
Sbjct  371  LRQSFAESLNPPVLIFVQSKERAKELY------DELKCENIRAGVI--------HSDLPP  416

Query  418  RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA-RADQ  476
             +++  + +F+ G   +L+AT V   G+D    N V+ Y    +  + +   GR+ RA +
Sbjct  417  GERENAVDQFRAGEKWVLIATDVIARGMDFKGINCVINYDFPDSASAYIHRIGRSGRAGR  476

Query  477  S  477
            S
Sbjct  477  S  477


>sp|Q4R5S7|DDX4_MACFA Probable ATP-dependent RNA helicase DDX4 
OS=Macaca fascicularis OX=9541 GN=DDX4 PE=2 SV=1
Length=725

 Score = 37.4 bits (85),  Expect = 0.46, Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 48/103 (47%), Gaps = 14/103 (14%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            R ++F  T++ A  +  +L Q++ + T  I                  QR++++ +  F+
Sbjct  543  RTMVFVETKKKADFIATFLCQEK-ISTTSIHGD-------------REQREREQALGDFR  588

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
             G   +LVATSVA  GLDI +   V+ + L +     V   GR
Sbjct  589  CGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGR  631


>sp|A1DNG2|DBP10_NEOFI ATP-dependent RNA helicase dbp10 OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 
/ FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dbp10 
PE=3 SV=1
Length=934

 Score = 37.7 bits (86),  Expect = 0.47, Method: Compositional matrix adjust.
 Identities = 20/59 (34%), Positives = 31/59 (53%), Gaps = 1/59 (2%)

Query  424  IQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF  481
            +Q F+ G  N+LV T VA  G+DIP    V+ Y   +     +   GR ARA +  +++
Sbjct  417  VQNFRTGMTNILVVTDVAARGIDIPILANVINYDFPSQPKIFIHRVGRTARAGRKGWSY  475


>sp|Q6GWX0|DDX4_PIG Probable ATP-dependent RNA helicase DDX4 OS=Sus 
scrofa OX=9823 GN=DDX4 PE=2 SV=1
Length=722

 Score = 37.4 bits (85),  Expect = 0.47, Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 48/103 (47%), Gaps = 14/103 (14%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            R ++F  T++ A  +  +L Q++ + T  I                  QR++++ +  F+
Sbjct  540  RTMVFVETKKKADFIATFLCQEK-ISTTSIHGD-------------REQREREQALGDFR  585

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
             G   +LVATSVA  GLDI +   V+ + L +     V   GR
Sbjct  586  FGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGR  628


>sp|Q7UFR2|UVRB_RHOBA UvrABC system protein B OS=Rhodopirellula 
baltica (strain DSM 10527 / NCIMB 13988 / SH1) OX=243090 GN=uvrB 
PE=3 SV=1
Length=708

 Score = 37.4 bits (85),  Expect = 0.48, Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            +++Q+ + G  + LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  492  DLLQELRAGQFDCLVGVNLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRA  547


>sp|Q5BFU7|DBP10_EMENI ATP-dependent RNA helicase dbp10 OS=Emericella 
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / 
NRRL 194 / M139) OX=227321 GN=dbp10 PE=3 SV=1
Length=936

 Score = 37.4 bits (85),  Expect = 0.49, Method: Compositional matrix adjust.
 Identities = 21/59 (36%), Positives = 31/59 (53%), Gaps = 1/59 (2%)

Query  424  IQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF  481
            +Q F+ G  N+LV T VA  G+DIP    V+ Y   +     V   GR ARA +  +++
Sbjct  416  VQNFRTGISNILVVTDVAARGIDIPILANVINYDFPSQPKIFVHRVGRTARAGRKGWSY  474


>sp|E7F8F4|ASCC3_DANRE Activating signal cointegrator 1 complex 
subunit 3 OS=Danio rerio OX=7955 GN=ascc3 PE=3 SV=2
Length=1534

 Score = 37.7 bits (86),  Expect = 0.49, Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 68/137 (50%), Gaps = 15/137 (11%)

Query  19    NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLD---GRW  75
             N+++  PTG+GKT AA     R       +KVV +     LV +  E+++  ++   GR 
Sbjct  906   NVLLGAPTGSGKTIAAEMAIFRVFNMYPTSKVVYIAPLKALVRERIEDWKIRIEEKLGR-  964

Query  76    TVTTLSGDMGP--RAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC  133
              V  L+GD  P  RA    +A+  DL++ T E       S +   +V+    +++++DE 
Sbjct  965   KVVELTGDNTPDMRA----IAQA-DLIVTTPEKWDGVSRSWQNRSYVQKV--AILIIDEI  1017

Query  134   HHTHKD--TVYNVIMSQ  148
             H   +D   V  VI+S+
Sbjct  1018  HLLGEDRGPVLEVIVSR  1034


 Score = 36.2 bits (82),  Expect = 1.3, Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 79/173 (46%), Gaps = 35/173 (20%)

Query  18   KNIIIWLPTGAGKTRAAAYV----AKRHLET-----VDGAKVVVLVNRVHLVTQHGEEFR  68
            +N++I  PTGAGKT  A        ++HL+       D  K+V +     L  +    F 
Sbjct  90   ENLLICAPTGAGKTNIAMLTILHEIRQHLQPGGVIRKDQFKIVYVAPMKALAAEMTNYFS  149

Query  69   RMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELT----  123
            + L+     V  L+GDM  +   G + R            QM +T+PE+ + V       
Sbjct  150  KRLEPLGIAVKELTGDM--QLTKGEILRT-----------QMLVTTPEKWDVVTRKSVGD  196

Query  124  -----VFSLIVVDECHHTHKD--TVYNVIMSQYLELKLQRAQPLPQVLGLTAS  169
                 V  L+++DE H  H+D   V   ++++ L  +++  Q + ++LGL+A+
Sbjct  197  VALSQVVRLLILDEVHLLHEDRGPVLESLVARTLR-QVESTQSMIRILGLSAT  248


>sp|Q9SF41|RH45_ARATH DEAD-box ATP-dependent RNA helicase 45 OS=Arabidopsis 
thaliana OX=3702 GN=RH45 PE=3 SV=1
Length=989

 Score = 37.4 bits (85),  Expect = 0.49, Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 53/109 (49%), Gaps = 6/109 (6%)

Query  418  RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGRARA  474
            R Q++ I  F+    NLL+ATSVA  GLD+    +VV +       + +  V   GRA  
Sbjct  651  RSQEKSISDFKSDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGR  710

Query  475  DQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIR  523
                  F++ + ++    +L+ +ALE L EQ V    K     + AK++
Sbjct  711  KGCAVTFISEDDAK-YAPDLV-KALE-LSEQPVPDDVKAVAEGFMAKVK  756


>sp|Q76PD3|DBP6_SCHPO ATP-dependent RNA helicase dbp6 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=dbp6 
PE=2 SV=1
Length=604

 Score = 37.4 bits (85),  Expect = 0.49, Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 41/71 (58%), Gaps = 1/71 (1%)

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
            ++ +++ +++++I +F  G LNLLV + +   G+D+ +   V+ Y    +  S V   GR
Sbjct  468  TSSLSRDERKKIISRFATGDLNLLVCSDLMARGIDVANTQNVINYDPPLSVRSYVHRIGR  527

Query  472  -ARADQSVYAF  481
             ARA +  +A+
Sbjct  528  TARAGREGFAW  538


>sp|Q8TKS3|UVRB_METAC UvrABC system protein B OS=Methanosarcina 
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) 
OX=188937 GN=uvrB PE=3 SV=1
Length=670

 Score = 37.4 bits (85),  Expect = 0.50, Method: Compositional matrix adjust.
 Identities = 31/135 (23%), Positives = 62/135 (46%), Gaps = 19/135 (14%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            R ++ T T++ A  L  +L + +      I+A+ L     + + T        E+I++ +
Sbjct  467  RALVTTLTKKLAEELTEFLARNE------IKARYLHSDIKTIERT--------EIIRELR  512

Query  429  DGTLNLLVATSVAEEGLDIPHCNVV-----VRYGLLTNEISMVQARGRARADQSVYAFVA  483
             G  ++LV  ++  EGLDIP    +      + G L +  S++Q  GRA  + S    + 
Sbjct  513  LGKFDVLVGINLLREGLDIPEVGFIGILDADKEGFLRDSKSLIQIIGRAARNSSSKVVLY  572

Query  484  TEGSRELKRELINEA  498
             +   E  ++ ++E 
Sbjct  573  ADNMTESIKKAVDET  587


>sp|Q9HMT9|UVRB_HALSA UvrABC system protein B OS=Halobacterium 
salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) OX=64091 
GN=uvrB PE=3 SV=1
Length=689

 Score = 37.4 bits (85),  Expect = 0.50, Method: Compositional matrix adjust.
 Identities = 20/59 (34%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+++  + G  ++LV  ++  EGLDIP  ++V      + G L +E S+VQ  GRA
Sbjct  496  ERHELVRGLRLGEYDVLVGINLLREGLDIPEVSLVAILDADQQGFLRSETSLVQTMGRA  554


>sp|Q5X906|UVRB_LEGPA UvrABC system protein B OS=Legionella pneumophila 
(strain Paris) OX=297246 GN=uvrB PE=3 SV=1
Length=663

 Score = 37.4 bits (85),  Expect = 0.51, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 34/59 (58%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+I+  + G  ++LV  ++  EGLD+P   +V      + G L +E S++Q  GRA
Sbjct  483  ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTIGRA  541


>sp|Q4FZF3|DDX49_MOUSE Probable ATP-dependent RNA helicase DDX49 
OS=Mus musculus OX=10090 GN=Ddx49 PE=2 SV=1
Length=480

 Score = 37.4 bits (85),  Expect = 0.52, Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 0/44 (0%)

Query  413  THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY  456
            + M Q+++   + KF+     +L+AT VA  GLDIP   VV+ +
Sbjct  280  SMMKQKERFAALAKFKSSIYRILIATDVASRGLDIPTVQVVINH  323


>sp|Q65ED8|UVRB_BACLD UvrABC system protein B OS=Bacillus licheniformis 
(strain ATCC 14580 / DSM 13 / JCM 2505 / CCUG 7422 
/ NBRC 12200 / NCIMB 9375 / NCTC 10341 / NRRL NRS-1264 / Gibson 
46) OX=279010 GN=uvrB PE=3 SV=1
Length=661

 Score = 37.4 bits (85),  Expect = 0.52, Method: Compositional matrix adjust.
 Identities = 20/56 (36%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + G  ++LV  ++  EGLDIP  ++V      + G L +E S++Q  GRA
Sbjct  486  EIIRDLRLGKHDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA  541


>sp|A5I9P3|UVRB_LEGPC UvrABC system protein B OS=Legionella pneumophila 
(strain Corby) OX=400673 GN=uvrB PE=3 SV=1
Length=663

 Score = 37.4 bits (85),  Expect = 0.52, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 34/59 (58%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+I+  + G  ++LV  ++  EGLD+P   +V      + G L +E S++Q  GRA
Sbjct  483  ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTIGRA  541


>sp|C5BEJ2|UVRB_EDWI9 UvrABC system protein B OS=Edwardsiella 
ictaluri (strain 93-146) OX=634503 GN=uvrB PE=3 SV=1
Length=672

 Score = 37.4 bits (85),  Expect = 0.52, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 34/59 (58%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+I+  + G  + LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  484  ERMEIIRDLRLGEFDALVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  542


>sp|Q5X0E6|UVRB_LEGPL UvrABC system protein B OS=Legionella pneumophila 
(strain Lens) OX=297245 GN=uvrB PE=3 SV=1
Length=663

 Score = 37.4 bits (85),  Expect = 0.54, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 34/59 (58%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+I+  + G  ++LV  ++  EGLD+P   +V      + G L +E S++Q  GRA
Sbjct  483  ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTIGRA  541


>sp|O60072|ASCC3_SCHPO RQC trigger complex helicase rqt2 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 
GN=rqt2 PE=1 SV=1
Length=1935

 Score = 37.4 bits (85),  Expect = 0.54, Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 74/155 (48%), Gaps = 10/155 (6%)

Query  19    NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEF-RRMLDGR-WT  76
             NI +  PTG+GKT AA     R L     +KVV +     LV +  +++  R+++    +
Sbjct  1152  NIFVGAPTGSGKTMAAELATWRALHNYPKSKVVYIAPMKALVKERVKDWGHRLVEPMGIS  1211

Query  77    VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHT  136
             +  L+GD  P           +++I T E       S +  ++V+    SLI++DE H  
Sbjct  1212  MIELTGDTNPDV---KAVTNANIIITTPEKWDGITRSWKSRKYVQDV--SLIILDEIHLL  1266

Query  137   HKD--TVYNVIMSQYLELKLQRAQPLPQVLGLTAS  169
               D   V  +I+S+   +  Q  + + +VLGL+ +
Sbjct  1267  GSDRGPVLEMIVSRMNYVASQTNKKV-RVLGLSTA  1300


>sp|Q65N62|CSHA_BACLD DEAD-box ATP-dependent RNA helicase CshA 
OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 
2505 / CCUG 7422 / NBRC 12200 / NCIMB 9375 / NCTC 10341 / NRRL 
NRS-1264 / Gibson 46) OX=279010 GN=cshA PE=3 SV=1
Length=487

 Score = 37.0 bits (84),  Expect = 0.55, Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 25/140 (18%)

Query  347  ENPKLEMLEKILQRQFSSSNSPR-GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
            E  K + L ++L  Q     SP   I+F RT++    L          + +++R      
Sbjct  225  ERKKFDTLTRLLDIQ-----SPELAIVFGRTKRRVDELT---------EALNLR------  264

Query  406  AGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI  463
             G +++  H  +TQ  +   ++KF+ G + +LVAT VA  GLDI     V  + +  +  
Sbjct  265  -GYTAEGIHGDLTQAKRMVALRKFKQGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPE  323

Query  464  SMVQARGR-ARADQSVYAFV  482
            S V   GR  RA ++  A  
Sbjct  324  SYVHRIGRTGRAGKTGMAMT  343


>sp|Q4P7Z8|DBP5_USTMA ATP-dependent RNA helicase DBP5 OS=Ustilago 
maydis (strain 521 / FGSC 9021) OX=237631 GN=DBP5 PE=3 SV=1
Length=456

 Score = 37.0 bits (84),  Expect = 0.55, Method: Compositional matrix adjust.
 Identities = 20/67 (30%), Positives = 34/67 (51%), Gaps = 2/67 (3%)

Query  394  QTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN  451
            +T D  AQ +   G+   S H  +   D+   I  F+DG   +L++T+V   G+DI    
Sbjct  313  ETADRIAQKMTQEGHKVDSLHGRLETADRDRTIDAFRDGKSKVLISTNVIARGIDIQQVT  372

Query  452  VVVRYGL  458
            +V+ Y +
Sbjct  373  LVINYDM  379


>sp|C4ZHN1|UVRB_AGARV UvrABC system protein B OS=Agathobacter 
rectalis (strain ATCC 33656 / DSM 3377 / JCM 17463 / KCTC 5835 
/ VPI 0990) OX=515619 GN=uvrB PE=3 SV=1
Length=660

 Score = 37.4 bits (85),  Expect = 0.55, Method: Compositional matrix adjust.
 Identities = 28/114 (25%), Positives = 55/114 (48%), Gaps = 19/114 (17%)

Query  364  SSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEV  423
            ++N  + +I T T++ A  L  ++ +      + IR + L         + +   ++ E+
Sbjct  440  TANHHKVLITTLTKRMAEDLTNYMAE------LGIRVKYL--------HSDIDTLERAEI  485

Query  424  IQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            I+  +    ++LV  ++  EGLDIP   +V      + G L +E S++Q  GRA
Sbjct  486  IRDLRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRA  539


>sp|Q4R8K5|IF4A1_MACFA Eukaryotic initiation factor 4A-I OS=Macaca 
fascicularis OX=9541 GN=EIF4A1 PE=2 SV=1
Length=406

 Score = 37.0 bits (84),  Expect = 0.55, Method: Compositional matrix adjust.
 Identities = 22/93 (24%), Positives = 46/93 (49%), Gaps = 14/93 (15%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            + +IF  TR+       WL ++  +   D  A  + G         M Q+++  ++++F+
Sbjct  274  QAVIFINTRRKVD----WLTEK--MHARDFTASAMHG--------DMDQKERDVIMREFR  319

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN  461
             G+  +L+ T +   G+D+   ++V+ Y L TN
Sbjct  320  SGSSRVLITTDLLARGIDVQQVSLVINYDLPTN  352


>sp|Q8N3C0|ASCC3_HUMAN Activating signal cointegrator 1 complex 
subunit 3 OS=Homo sapiens OX=9606 GN=ASCC3 PE=1 SV=3
Length=2202

 Score = 37.4 bits (85),  Expect = 0.56, Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 75/155 (48%), Gaps = 10/155 (6%)

Query  19    NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRW--T  76
             N+++  PTG+GKT AA     R       +K V +     LV +  ++++  ++ +    
Sbjct  1344  NVLLGAPTGSGKTVAAELAIFRVFNKYPTSKAVYIAPLKALVRERMDDWKVRIEEKLGKK  1403

Query  77    VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECH--  134
             V  L+GD+ P      +A+  DL++ T E       S +   +V+    +++++DE H  
Sbjct  1404  VIELTGDVTP--DMKSIAKA-DLIVTTPEKWDGVSRSWQNRNYVQQV--TILIIDEIHLL  1458

Query  135   HTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS  169
                +  V  VI+S+   +     +P+ +++GL+ +
Sbjct  1459  GEERGPVLEVIVSRTNFISSHTEKPV-RIVGLSTA  1492


 Score = 37.0 bits (84),  Expect = 0.89, Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 80/175 (46%), Gaps = 38/175 (22%)

Query  17   GKNIIIWLPTGAGKTRAAAYVA----KRHLE----TVDGAKVVVLVNRVHLVTQHGEEFR  68
             +N++I  PTGAGKT  A        ++H +      +  K+V +     L  +  + F 
Sbjct  492  NENMLICAPTGAGKTNIAMLTVLHEIRQHFQQGVIKKNEFKIVYVAPMKALAAEMTDYFS  551

Query  69   RMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELL--QMALTSPEEEEHVELT--  123
            R L+     V  L+GDM                +  +E+L  QM +T+PE+ + V     
Sbjct  552  RRLEPLGIIVKELTGDMQ---------------LSKSEILRTQMLVTTPEKWDVVTRKSV  596

Query  124  -------VFSLIVVDECHHTHKD--TVYNVIMSQYLELKLQRAQPLPQVLGLTAS  169
                   +  L+++DE H  H+D   V   I+++ L  +++  Q + ++LGL+A+
Sbjct  597  GDVALSQIVRLLILDEVHLLHEDRGPVLESIVARTLR-QVESTQSMIRILGLSAT  650


>sp|Q5ZZD9|UVRB_LEGPH UvrABC system protein B OS=Legionella pneumophila 
subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 
/ DSM 7513) OX=272624 GN=uvrB PE=3 SV=1
Length=663

 Score = 37.4 bits (85),  Expect = 0.57, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 34/59 (58%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+I+  + G  ++LV  ++  EGLD+P   +V      + G L +E S++Q  GRA
Sbjct  483  ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTIGRA  541


>sp|Q9VNV3|DDX1_DROME ATP-dependent RNA helicase Ddx1 OS=Drosophila 
melanogaster OX=7227 GN=Ddx1 PE=2 SV=1
Length=727

 Score = 37.4 bits (85),  Expect = 0.57, Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 64/152 (42%), Gaps = 25/152 (16%)

Query  333  DRKNELAHLATHGPENPKLEMLEKILQRQF-----SSSNSPRGIIFTRTRQSAHSLLLWL  387
            DR N   H   H  E   L    K+L+ ++        N  R IIF RT+Q   +L  +L
Sbjct  470  DRDN--VHPGNHSKET--LSQAVKLLKGEYCVHAIDKHNMDRAIIFCRTKQDCDNLERFL  525

Query  388  QQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ--EVIQKFQDGTLNLLVATSVAEEGL  445
            +Q+ G                S    H  ++ Q+  E ++ F+   +  L+ T VA  GL
Sbjct  526  RQRGGKHY-------------SCVCLHGDRKPQERKENLEMFKRQQVKFLICTDVAARGL  572

Query  446  DIPHCNVVVRYGLLTNEISMVQARGR-ARADQ  476
            DI     ++   L  ++ + V   GR  RA++
Sbjct  573  DITGLPFMINVTLPDDKTNYVHRIGRVGRAER  604


>sp|Q9CJS1|RHLB_PASMU ATP-dependent RNA helicase RhlB OS=Pasteurella 
multocida (strain Pm70) OX=272843 GN=rhlB PE=3 SV=1
Length=423

 Score = 37.0 bits (84),  Expect = 0.58, Method: Compositional matrix adjust.
 Identities = 48/178 (27%), Positives = 71/178 (40%), Gaps = 38/178 (21%)

Query  324  ERRLLALFDD----RKNELAHLATHGPENPKLEMLEK----ILQRQFSSSN---------  366
            + RL  LF      +  ELA    + PE  ++E L+K    I +  F  SN         
Sbjct  188  QHRLTMLFSATLSYKVRELAFEDMNDPEYVEIEPLQKTGHRIKEELFYPSNQDKMALLLT  247

Query  367  ------SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ  420
                    R IIF  T+     +  +L           R  LL G         + Q+ +
Sbjct  248  LLEEEWPERCIIFANTKHRCEDIWGYLAADGH------RVGLLTG--------DVAQKKR  293

Query  421  QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQS  477
              ++++F +G L++LVAT VA  GL I   + V  Y L  +    V   GR  RA +S
Sbjct  294  LSLLKQFTEGHLDILVATDVAARGLHISDVSHVFNYDLPDDREDYVHRIGRTGRAGES  351


>sp|Q38YA4|UVRB_LATSS UvrABC system protein B OS=Latilactobacillus 
sakei subsp. sakei (strain 23K) OX=314315 GN=uvrB PE=3 
SV=1
Length=667

 Score = 37.4 bits (85),  Expect = 0.59, Method: Compositional matrix adjust.
 Identities = 17/59 (29%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+I+  + G  ++L+  ++  EG+D+P  ++V      + G L +E S++Q  GRA
Sbjct  488  ERTEIIRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRSERSLIQTIGRA  546


>sp|O26542|UVRB_METTH UvrABC system protein B OS=Methanothermobacter 
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 
10044 / NBRC 100330 / Delta H) OX=187420 GN=uvrB PE=3 SV=1
Length=646

 Score = 37.4 bits (85),  Expect = 0.59, Method: Compositional matrix adjust.
 Identities = 19/56 (34%), Positives = 30/56 (54%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I   + G  + LV  ++  EGLD+P   +V      + G L +E S++Q  GRA
Sbjct  484  EIIDDLRRGEFDCLVGVNLLREGLDLPEVALVAILDADKEGFLRSETSLIQTIGRA  539


>sp|Q7VLL3|UVRB_HAEDU UvrABC system protein B OS=Haemophilus ducreyi 
(strain 35000HP / ATCC 700724) OX=233412 GN=uvrB PE=3 
SV=1
Length=675

 Score = 37.4 bits (85),  Expect = 0.59, Method: Compositional matrix adjust.
 Identities = 19/56 (34%), Positives = 31/56 (55%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I   + G  ++LV  ++  EGLD+P   +V      + G L +E S++Q  GRA
Sbjct  490  EIIHDLRIGMFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSESSLIQTIGRA  545


>sp|A6M2Z0|UVRB_CLOB8 UvrABC system protein B OS=Clostridium beijerinckii 
(strain ATCC 51743 / NCIMB 8052) OX=290402 GN=uvrB 
PE=3 SV=1
Length=657

 Score = 37.0 bits (84),  Expect = 0.60, Method: Compositional matrix adjust.
 Identities = 20/74 (27%), Positives = 39/74 (53%), Gaps = 5/74 (7%)

Query  404  IGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGL  458
            +G   +   + +   ++ ++I+  + G  ++LV  ++  EGLDIP   +V      + G 
Sbjct  467  LGVKTTYMHSDIDTIERMKIIRDLRLGEYDVLVGINLLREGLDIPEVALVAILDADKEGF  526

Query  459  LTNEISMVQARGRA  472
            L +E S++Q  GRA
Sbjct  527  LRSETSLIQTIGRA  540


>sp|A1CNV8|DRS1_ASPCL ATP-dependent RNA helicase drs1 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=drs1 PE=3 SV=1
Length=826

 Score = 37.4 bits (85),  Expect = 0.60, Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 14/88 (16%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            R I+F R ++ AH + +      GL  + ++A  L G+        M+Q  + + ++ F+
Sbjct  553  RVIVFFRQKKEAHRVRIVF----GL--LGLKAAELHGS--------MSQEQRIKSVESFR  598

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRY  456
            +G +  L+AT +A  GLDI     V+ Y
Sbjct  599  EGKVAFLLATDLASRGLDIKGVETVINY  626


>sp|Q7RZH4|MAK5_NEUCR ATP-dependent RNA helicase mak-5 OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / 
DSM 1257 / FGSC 987) OX=367110 GN=mak-5 PE=3 SV=1
Length=805

 Score = 37.4 bits (85),  Expect = 0.60, Method: Compositional matrix adjust.
 Identities = 22/53 (42%), Positives = 30/53 (57%), Gaps = 1/53 (2%)

Query  426  KFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQS  477
            K ++G+  +LVAT VA  GLDIP  ++V+ Y +       V   GR ARA  S
Sbjct  573  KKKNGSAAILVATDVAARGLDIPDVDLVIHYHVPRAAEDYVHRSGRTARASNS  625


>sp|Q6CX73|FAL1_KLULA ATP-dependent RNA helicase FAL1 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 
1267 / NRRL Y-1140 / WM37) OX=284590 GN=FAL1 PE=3 SV=1
Length=398

 Score = 37.0 bits (84),  Expect = 0.61, Method: Compositional matrix adjust.
 Identities = 23/86 (27%), Positives = 40/86 (47%), Gaps = 3/86 (3%)

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISM  465
            SS    M Q ++ +V+  F+ G   +L++T V   G+D+   ++V+ Y +   L N I  
Sbjct  292  SSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHR  351

Query  466  VQARGRARADQSVYAFVATEGSRELK  491
            +   GR         F+  E   +LK
Sbjct  352  IGRSGRFGRKGVAINFITKEERPKLK  377


>sp|Q0IE10|UVRB_SYNS3 UvrABC system protein B OS=Synechococcus 
sp. (strain CC9311) OX=64471 GN=uvrB PE=3 SV=1
Length=679

 Score = 37.0 bits (84),  Expect = 0.61, Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 19/114 (17%)

Query  364  SSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEV  423
            +S   R ++ T T++ A  L  +L + +      +R + L          H  +R   E+
Sbjct  441  ASKKQRVLVTTLTKRMAEDLTDYLAENK------VRVRYL------HSEIHSIER--IEI  486

Query  424  IQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            IQ  + G  ++LV  ++  EGLD+P  ++V      + G L  + S++Q  GRA
Sbjct  487  IQDLRLGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAQRSLIQTIGRA  540


>sp|Q650T9|RH7_ORYSJ DEAD-box ATP-dependent RNA helicase 7 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os09g0520700 PE=2 SV=1
Length=696

 Score = 37.0 bits (84),  Expect = 0.61, Method: Compositional matrix adjust.
 Identities = 27/91 (30%), Positives = 43/91 (47%), Gaps = 18/91 (20%)

Query  365  SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI  424
            S   R IIFT T++SA  L        GL            AG+ +    + Q  ++ ++
Sbjct  367  SRGGRTIIFTETKESASDL-------SGLI-----------AGSRALHGDVAQAQREVIL  408

Query  425  QKFQDGTLNLLVATSVAEEGLDIPHCNVVVR  455
              F+ G   +LVAT+VA  GLDI    ++++
Sbjct  409  AGFRSGKFLVLVATNVAARGLDINDVQLIIQ  439


>sp|A1CTZ6|DBP10_ASPCL ATP-dependent RNA helicase dbp10 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / 
NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=dbp10 PE=3 
SV=1
Length=935

 Score = 37.4 bits (85),  Expect = 0.62, Method: Compositional matrix adjust.
 Identities = 20/59 (34%), Positives = 31/59 (53%), Gaps = 1/59 (2%)

Query  424  IQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF  481
            +Q F+ G  N+LV T VA  G+DIP    V+ Y   +     +   GR ARA +  +++
Sbjct  416  VQNFRSGLSNILVVTDVAARGIDIPILANVINYDFPSQPKIFIHRVGRTARAGRKGWSY  474


>sp|A0JWN0|UVRB_ARTS2 UvrABC system protein B OS=Arthrobacter 
sp. (strain FB24) OX=290399 GN=uvrB PE=3 SV=1
Length=693

 Score = 37.0 bits (84),  Expect = 0.62, Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 11/110 (10%)

Query  370  GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKF  427
            G I TRT ++   L+  L ++      D     L+G G   +  H  +    + E++++ 
Sbjct  444  GEIKTRTAKNERVLVTTLTKRMAEDLTD----YLLGHGVKVEYLHSDVDTLRRVELLREL  499

Query  428  QDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            + G  ++LV  ++  EGLD+P  ++V      + G L +  S++Q  GRA
Sbjct  500  RMGVFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSSTSLIQTIGRA  549


>sp|E1BNG3|ASCC3_BOVIN Activating signal cointegrator 1 complex 
subunit 3 OS=Bos taurus OX=9913 GN=ascc3 PE=3 SV=1
Length=2201

 Score = 37.4 bits (85),  Expect = 0.62, Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 75/155 (48%), Gaps = 10/155 (6%)

Query  19    NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRW--T  76
             N+++  PTG+GKT AA     R       +K V +     LV +  ++++  ++ +    
Sbjct  1344  NVLLGAPTGSGKTVAAELAIFRVFNKYPTSKAVYIAPLKALVRERMDDWKVRIEEKLGKK  1403

Query  77    VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECH--  134
             V  L+GD+ P      +A+  DL++ T E       S +   +V+    +++++DE H  
Sbjct  1404  VIELTGDVTP--DMKSIAKA-DLIVTTPEKWDGVSRSWQNRNYVKQV--TILIIDEIHLL  1458

Query  135   HTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS  169
                +  V  VI+S+   +     +P+ +++GL+ +
Sbjct  1459  GEERGPVLEVIVSRTNFISSHTEKPV-RIVGLSTA  1492


 Score = 34.3 bits (77),  Expect = 5.3, Method: Compositional matrix adjust.
 Identities = 43/175 (25%), Positives = 78/175 (45%), Gaps = 38/175 (22%)

Query  17   GKNIIIWLPTGAGKTRAAAYVA----KRHLE----TVDGAKVVVLVNRVHLVTQHGEEFR  68
             +N++I  PTGAGKT  A        ++H +      +  K+V +     L  +    F 
Sbjct  492  NENMLICAPTGAGKTNIAMLTVLHEIRQHFQQGVIKKNEFKIVYVAPMKALAAEMTNYFS  551

Query  69   RMLDGRWTVTT-LSGDMGPRAGFGHLARCHDLLICTAELL--QMALTSPEEEEHVELT--  123
            + L+    V   L+GDM                +   E+L  QM +T+PE+ + V     
Sbjct  552  KRLEPLGIVVKELTGDMQ---------------LSKNEILRTQMLVTTPEKWDVVTRKSV  596

Query  124  -------VFSLIVVDECHHTHKD--TVYNVIMSQYLELKLQRAQPLPQVLGLTAS  169
                   +  L+++DE H  H+D   V   I+++ L  +++  Q + ++LGL+A+
Sbjct  597  GDVALSQIVKLLILDEVHLLHEDRGPVLESIVARTLR-QVESTQSMIRILGLSAT  650


>sp|B2VG58|RHLB_ERWT9 ATP-dependent RNA helicase RhlB OS=Erwinia 
tasmaniensis (strain DSM 17950 / CFBP 7177 / CIP 109463 / 
NCPPB 4357 / Et1/99) OX=465817 GN=rhlB PE=3 SV=1
Length=430

 Score = 37.0 bits (84),  Expect = 0.62, Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 51/122 (42%), Gaps = 18/122 (15%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+ +L+ +++ ++      R IIF  T+     +  W      L     R  LL G    
Sbjct  243  KMRLLQTLIEEEWPD----RTIIFANTKHRCEDV--WGH----LAADGHRVGLLTG----  288

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q+ +  ++  F  G +++LVAT VA  GL IP    V  Y L  +    V   
Sbjct  289  ----DVAQKKRLRILDDFTKGDVDILVATDVAARGLHIPAVTHVFNYDLPDDREDYVHRI  344

Query  470  GR  471
            GR
Sbjct  345  GR  346


>sp|Q4I7F9|PRP28_GIBZE Pre-mRNA-splicing ATP-dependent RNA helicase 
PRP28 OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 
/ FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=PRP28 PE=3 
SV=1
Length=721

 Score = 37.0 bits (84),  Expect = 0.64, Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%)

Query  416  TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA  474
            TQ  ++  +   + G   +LVAT +A  G+D+P  ++VV + + TN  S     GR  RA
Sbjct  596  TQEQREAALGSVRAGHTQVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIGRTGRA  655

Query  475  DQSVYAFV  482
             +S  A  
Sbjct  656  GKSGVAIT  663


>sp|E9PZJ8|ASCC3_MOUSE Activating signal cointegrator 1 complex 
subunit 3 OS=Mus musculus OX=10090 GN=Ascc3 PE=1 SV=1
Length=2198

 Score = 37.4 bits (85),  Expect = 0.64, Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 75/155 (48%), Gaps = 10/155 (6%)

Query  19    NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRW--T  76
             N+++  PTG+GKT AA     R       +K V +     LV +  ++++  ++ +    
Sbjct  1345  NVLLGAPTGSGKTVAAELAIFRVFNKYPTSKAVYIAPLKALVRERMDDWKIRIEEKLGKK  1404

Query  77    VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECH--  134
             V  L+GD+ P      +A+  DL++ T E       S +   +V+    +++++DE H  
Sbjct  1405  VIELTGDVTP--DMKSIAKA-DLIVTTPEKWDGVSRSWQNRSYVQQV--NILIIDEIHLL  1459

Query  135   HTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS  169
                +  V  VI+S+   +     +P+ +++GL+ +
Sbjct  1460  GEERGPVLEVIVSRTNFISSHTEKPV-RIVGLSTA  1493


 Score = 34.7 bits (78),  Expect = 4.4, Method: Compositional matrix adjust.
 Identities = 43/175 (25%), Positives = 78/175 (45%), Gaps = 38/175 (22%)

Query  17   GKNIIIWLPTGAGKTRAAAYV----AKRHLE----TVDGAKVVVLVNRVHLVTQHGEEFR  68
             +N++I  PTGAGKT  A        ++H        +  K+V +     L  +    F 
Sbjct  493  NENMLICAPTGAGKTNIAMLTILHEIRQHFHQGVIKKNEFKIVYVAPMKALAAEMTNYFS  552

Query  69   RMLDGRWTVTT-LSGDMGPRAGFGHLARCHDLLICTAELL--QMALTSPEEEEHVELT--  123
            + L+    V   L+GDM                +  +E+L  QM +T+PE+ + V     
Sbjct  553  KRLEPLGIVVKELTGDMQ---------------LSKSEILRTQMLVTTPEKWDVVTRKSV  597

Query  124  -------VFSLIVVDECHHTHKD--TVYNVIMSQYLELKLQRAQPLPQVLGLTAS  169
                   +  L+++DE H  H+D   V   I+++ L  +++  Q + ++LGL+A+
Sbjct  598  GDVALSQIVKLLILDEVHLLHEDRGPVLESIVARTLR-QVESTQSMIRILGLSAT  651


>sp|Q4IJH1|DBP3_GIBZE ATP-dependent RNA helicase DBP3 OS=Gibberella 
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / 
NRRL 31084 / PH-1) OX=229533 GN=DBP3 PE=3 SV=1
Length=581

 Score = 37.0 bits (84),  Expect = 0.65, Method: Compositional matrix adjust.
 Identities = 33/146 (23%), Positives = 63/146 (43%), Gaps = 18/146 (12%)

Query  346  PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
            P   +  +LE + + Q  S  + R ++F   ++ A  +  +L ++ G++   I   L   
Sbjct  396  PRGKEFRLLEVLKEHQQGSKKNDRILVFCLYKKEATRIENFLSRK-GIRVGGIHGDL---  451

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNE  462
                       Q  +   ++ F+ G   +LVAT VA  GLDIP   +V+       + + 
Sbjct  452  ----------RQEQRTRSLEAFKSGQTPVLVATDVAARGLDIPEVKLVINVTFPLTIEDY  501

Query  463  ISMVQARGRA-RADQSVYAFVATEGS  487
            +  +   GRA +  Q++  F   + S
Sbjct  502  VHRIGRTGRAGKTGQAITFFTVEDKS  527


>sp|Q10055|FAL1_SCHPO ATP-dependent RNA helicase fal1 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=tif412 
PE=1 SV=1
Length=394

 Score = 37.0 bits (84),  Expect = 0.65, Method: Compositional matrix adjust.
 Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 0/64 (0%)

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
            +S    M Q+++  ++Q F+ G   +L+ T +   G+D+   ++V+ Y L  N  + +  
Sbjct  288  TSMHGEMPQKERDAIMQDFRQGNSRVLICTDIWARGIDVQQVSLVINYDLPANRENYIHR  347

Query  469  RGRA  472
             GR+
Sbjct  348  IGRS  351


>sp|P05470|YKP4_KLULA Uncharacterized killer plasmid pGKL-2 helicase 
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 
/ DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 PE=3 
SV=1
Length=597

 Score = 37.0 bits (84),  Expect = 0.65, Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 76/164 (46%), Gaps = 29/164 (18%)

Query  20   IIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRR-MLDGRWTVT  78
            +I+    G GKT AAA +A  +L++  G KV+ L N ++ +     E+ + +LD R  + 
Sbjct  57   LIVCYDVGLGKTYAAACLAHMYLDS--GFKVLYLSNSLNSIDNFSNEYEKVVLDSR--LN  112

Query  79   TLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHTHK  138
            +L  ++  ++ F     C                   E ++V+   + LI++DE H+  +
Sbjct  113  SLKKNITIKS-FSKFYNCE---------------KRGESDNVD---YGLIILDEVHNL-R  152

Query  139  DTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAI  182
            ++ Y     + ++ KL       ++L +TA+P      +LD  +
Sbjct  153  ESAYRY---KLIKNKLDTMNN-SKILVITATPMIDSKDELDSIL  192


>sp|Q54TF8|DDX19_DICDI ATP-dependent RNA helicase ddx19 OS=Dictyostelium 
discoideum OX=44689 GN=helC PE=2 SV=1
Length=465

 Score = 37.0 bits (84),  Expect = 0.65, Method: Compositional matrix adjust.
 Identities = 15/49 (31%), Positives = 31/49 (63%), Gaps = 0/49 (0%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI  463
            +T  ++ + I+ F+DG   +L+ T+V   G+DIP  ++V+ Y +  +E+
Sbjct  342  LTTEERFKQIKDFKDGKSKVLITTNVLARGIDIPQVSLVINYDVPLDEM  390


>sp|Q7RYZ7|DBP8_NEUCR ATP-dependent RNA helicase dbp-8 OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / 
DSM 1257 / FGSC 987) OX=367110 GN=dbp-8 PE=3 SV=1
Length=626

 Score = 37.0 bits (84),  Expect = 0.66, Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
            +S  + + Q  + + + +F+     +LVAT VA  GLDIP   +V+ Y +  +    +  
Sbjct  478  TSLHSKLPQSQRIDNLGRFRASAARILVATDVAARGLDIPEVKIVINYDIPRDPDDYIHR  537

Query  469  RGR-ARA  474
             GR ARA
Sbjct  538  VGRTARA  544


>sp|Q6F9D2|UVRB_ACIAD UvrABC system protein B OS=Acinetobacter 
baylyi (strain ATCC 33305 / BD413 / ADP1) OX=62977 GN=uvrB 
PE=3 SV=1
Length=675

 Score = 37.0 bits (84),  Expect = 0.66, Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++I + + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  490  KIIHELRTGVYDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA  545


>sp|P73421|RECQ_SYNY3 ATP-dependent DNA helicase RecQ OS=Synechocystis 
sp. (strain ATCC 27184 / PCC 6803 / Kazusa) OX=1111708 
GN=recQ PE=3 SV=1
Length=478

 Score = 37.0 bits (84),  Expect = 0.67, Method: Compositional matrix adjust.
 Identities = 46/207 (22%), Positives = 85/207 (41%), Gaps = 40/207 (19%)

Query  346  PENPKLEMLEKILQRQFSSSNSPR----------GIIFTRTRQSAHSLLLWLQQQQGLQT  395
            P  P+L +  K++  ++      R          G+I+ RTR  A +L  WLQ++     
Sbjct  208  PHRPQLHLKVKMVLSEYCRRQQLRRFLLKHLQESGLIYVRTRTMAINLAQWLQER-----  262

Query  396  VDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV  453
                       G  S++ H  +    ++++ QK+  G ++ +V T+    G+D P    V
Sbjct  263  -----------GFDSEAYHGGLGPHQRRQLEQKWLTGQISSVVCTNAFGLGIDKPDTRWV  311

Query  454  VRYGLLTNEISMVQARGRARAD---QSVYAFVA------TEGSRELKRELINEALETLME  504
            + Y      +  +Q  GRA  D         V+        G R+L++  +++A + L  
Sbjct  312  LHYQAPLMLMDYLQEVGRAGRDLQPAECLTLVSEPTGWLDSGDRQLRQYFLSQASKYLQR  371

Query  505  QAVAAVQKMDQ---AEYQAKIRDLQQA  528
              V + Q   Q    + +A   DL+ A
Sbjct  372  AEVLSQQIPSQGNLGQLKAHFPDLEMA  398


>sp|Q2UHC1|DBP10_ASPOR ATP-dependent RNA helicase dbp10 OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=dbp10 
PE=3 SV=1
Length=929

 Score = 37.0 bits (84),  Expect = 0.67, Method: Compositional matrix adjust.
 Identities = 21/59 (36%), Positives = 31/59 (53%), Gaps = 1/59 (2%)

Query  424  IQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF  481
            +Q F+ G  N+LV T VA  G+DIP    V+ Y   +     V   GR ARA +  +++
Sbjct  415  VQNFRAGLSNILVVTDVAARGIDIPILANVINYDFPSQPKIFVHRVGRTARAGRKGWSY  473


>sp|Q8PFZ3|RHLB_XANAC ATP-dependent RNA helicase RhlB OS=Xanthomonas 
axonopodis pv. citri (strain 306) OX=190486 GN=rhlB PE=3 
SV=1
Length=571

 Score = 37.0 bits (84),  Expect = 0.68, Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 0/60 (0%)

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
            S  + Q+ ++ ++ +FQ G L +LVAT VA  GL I     V  Y L  +    V   GR
Sbjct  288  SGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGR  347


>sp|A3GHW9|ROK1_PICST ATP-dependent RNA helicase ROK1 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=ROK1 PE=3 SV=1
Length=558

 Score = 37.0 bits (84),  Expect = 0.68, Method: Compositional matrix adjust.
 Identities = 20/70 (29%), Positives = 38/70 (54%), Gaps = 4/70 (6%)

Query  416  TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR----  471
            T + ++EVI++F++G + +L+ T V   G+D    N+V+ Y +     + V   GR    
Sbjct  403  TPKQREEVIKRFKNGDIWVLITTDVLARGVDFKGVNMVINYDVPQTAQAYVHRIGRTGRG  462

Query  472  ARADQSVYAF  481
             +A ++V  F
Sbjct  463  GKAGRAVTFF  472


>sp|P56996|UVRB_NEIMA UvrABC system protein B OS=Neisseria meningitidis 
serogroup A / serotype 4A (strain DSM 15465 / Z2491) 
OX=122587 GN=uvrB PE=3 SV=1
Length=675

 Score = 37.0 bits (84),  Expect = 0.68, Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 7/106 (7%)

Query  372  IFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGT  431
            I  R ++    L+  L ++   Q  D  ++L I            +R   E+I+  + G 
Sbjct  444  INDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVER--VEIIRDLRLGL  501

Query  432  LNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
             ++LV  ++  EGLDIP  ++V      + G L +  S++Q  GRA
Sbjct  502  FDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRA  547


>sp|O73946|HELS_PYRFU ATP-dependent DNA helicase Hel308 OS=Pyrococcus 
furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / 
Vc1) OX=186497 GN=hel308 PE=1 SV=1
Length=720

 Score = 37.0 bits (84),  Expect = 0.69, Method: Compositional matrix adjust.
 Identities = 30/91 (33%), Positives = 45/91 (49%), Gaps = 4/91 (4%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGR  74
            LEGKN +I +PT +GKT  A  +A  H     G K V +V    L  +  +EF+      
Sbjct  37   LEGKNALISIPTASGKTLIAE-IAMVHRILTQGGKAVYIVPLKALAEEKFQEFQDWEKIG  95

Query  75   WTVTTLSGDMGPRAGFGHLARCHDLLICTAE  105
              V   +GD   +  +  L + +D++I TAE
Sbjct  96   LRVAMATGDYDSKDEW--LGK-YDIIIATAE  123


>sp|Q5QXB8|UVRB_IDILO UvrABC system protein B OS=Idiomarina loihiensis 
(strain ATCC BAA-735 / DSM 15497 / L2-TR) OX=283942 
GN=uvrB PE=3 SV=1
Length=677

 Score = 37.0 bits (84),  Expect = 0.71, Method: Compositional matrix adjust.
 Identities = 18/59 (31%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L ++ S++Q  GRA
Sbjct  485  ERMEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRA  543


>sp|A7Z985|UVRB_BACVZ UvrABC system protein B OS=Bacillus velezensis 
(strain DSM 23117 / BGSC 10A6 / LMG 26770 / FZB42) OX=326423 
GN=uvrB PE=3 SV=1
Length=661

 Score = 37.0 bits (84),  Expect = 0.71, Method: Compositional matrix adjust.
 Identities = 19/56 (34%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + G  ++L+  ++  EGLDIP  ++V      + G L +E S++Q  GRA
Sbjct  486  EIIRDLRLGKHDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA  541


>sp|P39517|DHH1_YEAST ATP-dependent RNA helicase DHH1 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DHH1 
PE=1 SV=1
Length=506

 Score = 37.0 bits (84),  Expect = 0.71, Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 11/111 (10%)

Query  373  FTRTRQSAH---SLLLWLQQQQGL------QTVDIRAQLLIGAGNSSQSTH--MTQRDQQ  421
            F   RQ  H   +L   LQ  Q +        V++ A+ +   G S   +H  M Q+++ 
Sbjct  264  FVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERN  323

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA  472
            +V  +F+ G +  LV + +   G+DI   NVV+ +       + +   GR+
Sbjct  324  KVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRS  374


>sp|A6ZXG9|DHH1_YEAS7 ATP-dependent RNA helicase DHH1 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=DHH1 PE=3 SV=1
Length=506

 Score = 37.0 bits (84),  Expect = 0.71, Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 11/111 (10%)

Query  373  FTRTRQSAH---SLLLWLQQQQGL------QTVDIRAQLLIGAGNSSQSTH--MTQRDQQ  421
            F   RQ  H   +L   LQ  Q +        V++ A+ +   G S   +H  M Q+++ 
Sbjct  264  FVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERN  323

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA  472
            +V  +F+ G +  LV + +   G+DI   NVV+ +       + +   GR+
Sbjct  324  KVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRS  374


>sp|Q3BNH8|RHLB_XANE5 ATP-dependent RNA helicase RhlB OS=Xanthomonas 
euvesicatoria pv. vesicatoria (strain 85-10) OX=316273 
GN=rhlB PE=3 SV=1
Length=573

 Score = 37.0 bits (84),  Expect = 0.71, Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 0/60 (0%)

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
            S  + Q+ ++ ++ +FQ G L +LVAT VA  GL I     V  Y L  +    V   GR
Sbjct  288  SGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGR  347


>sp|Q6AF52|UVRB_LEIXX UvrABC system protein B OS=Leifsonia xyli 
subsp. xyli (strain CTCB07) OX=281090 GN=uvrB PE=3 SV=1
Length=688

 Score = 37.0 bits (84),  Expect = 0.72, Method: Compositional matrix adjust.
 Identities = 22/77 (29%), Positives = 42/77 (55%), Gaps = 9/77 (12%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRARADQ  476
            E++ + + G  ++LV  ++  EGLD+P  ++V      + G L +  S++Q  GRA  + 
Sbjct  490  ELLTELRSGVFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSTSLIQTIGRAARNV  549

Query  477  S----VYAFVATEGSRE  489
            S    +YA V T+  ++
Sbjct  550  SGEVHMYADVLTDSMKK  566


>sp|A8F8W9|UVRB_PSELT UvrABC system protein B OS=Pseudothermotoga 
lettingae (strain ATCC BAA-301 / DSM 14385 / NBRC 107922 
/ TMO) OX=416591 GN=uvrB PE=3 SV=1
Length=656

 Score = 37.0 bits (84),  Expect = 0.72, Method: Compositional matrix adjust.
 Identities = 26/109 (24%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            R +I   T+++A  L  +L +  G++++ I ++L                ++ EV++K +
Sbjct  443  RALITVLTKKTAEKLSEYLVEM-GIKSLYIHSEL-------------DAIERIEVLKKLR  488

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
             G ++ +V  ++  EGLD+P  ++V      + G L +E +++Q  GR 
Sbjct  489  RGDVDAVVGINLLREGLDLPEVSLVAILDSDKEGFLRSETTLIQIIGRV  537


>sp|F1LPQ2|ASCC3_RAT Activating signal cointegrator 1 complex 
subunit 3 OS=Rattus norvegicus OX=10116 GN=Ascc3 PE=3 SV=1
Length=2197

 Score = 37.0 bits (84),  Expect = 0.72, Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 75/155 (48%), Gaps = 10/155 (6%)

Query  19    NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRW--T  76
             N+++  PTG+GKT AA     R       +K V +     LV +  ++++  ++ +    
Sbjct  1345  NVLLGAPTGSGKTVAAELAIFRVFNKYPTSKAVYIAPLKALVRERMDDWKIRIEEKLGKK  1404

Query  77    VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECH--  134
             V  L+GD+ P      +A+  DL++ T E       S +   +V+    +++++DE H  
Sbjct  1405  VIELTGDVTP--DMKSIAKA-DLIVTTPEKWDGVSRSWQNRSYVQQV--NILIIDEIHLL  1459

Query  135   HTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS  169
                +  V  VI+S+   +     +P+ +++GL+ +
Sbjct  1460  GEERGPVLEVIVSRTNFISSHTEKPV-RIVGLSTA  1493


 Score = 34.7 bits (78),  Expect = 3.6, Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 80/175 (46%), Gaps = 38/175 (22%)

Query  17   GKNIIIWLPTGAGKTRAAAYVA----KRHLE----TVDGAKVVVLVNRVHLVTQHGEEFR  68
             +N++I  PTGAGKT  A        ++H        +  K+V +     L  +    F 
Sbjct  493  NENMLICAPTGAGKTNIAMLTVLHEIRQHFHQGVLKKNEFKIVYVAPMKALAAEMTNYFS  552

Query  69   RMLDGRWTVTT-LSGDMGPRAGFGHLARCHDLLICTAELL--QMALTSPEEEE-------  118
            + L+    V   L+GDM                +  +E+L  QM +T+PE+ +       
Sbjct  553  KRLEPLGIVVKELTGDMQ---------------LSKSEILRTQMLVTTPEKWDVVTRKSV  597

Query  119  -HVELT-VFSLIVVDECHHTHKD--TVYNVIMSQYLELKLQRAQPLPQVLGLTAS  169
              V L+ +  L+++DE H  H+D   V   I+++ L  +++  Q + ++LGL+A+
Sbjct  598  GDVALSQIVKLLILDEVHLLHEDRGPVLESIVARTLR-QVESTQSMIRILGLSAT  651


>sp|O13983|HRQ1_SCHPO ATP-dependent helicase hrq1 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=hrq1 
PE=1 SV=4
Length=1063

 Score = 37.0 bits (84),  Expect = 0.73, Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 61/119 (51%), Gaps = 8/119 (7%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQ-QGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF  427
            R I+F R R++  SL+  ++Q+ +  Q  D+ +++       S     T ++++++  + 
Sbjct  553  RTIVFCRVRKTCESLMRLVRQELKTKQKGDLLSKI------QSYRAGYTVQERRKIESEM  606

Query  428  QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA-RADQSVYAFVATE  485
             +G L  ++AT+  E G+DI   + V+  G   +  ++ Q  GRA R ++S  A    E
Sbjct  607  FNGKLYGIIATNALELGIDIGSLDAVITIGFPYSLSNLRQQFGRAGRRNKSSLAVYIVE  665


>sp|Q50939|UVRB_NEIGO UvrABC system protein B OS=Neisseria gonorrhoeae 
OX=485 GN=uvrB PE=3 SV=1
Length=675

 Score = 37.0 bits (84),  Expect = 0.73, Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 7/106 (7%)

Query  372  IFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGT  431
            I  R ++    L+  L ++   Q  D  ++L I            +R   E+I+  + G 
Sbjct  444  INDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVER--VEIIRDLRLGL  501

Query  432  LNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
             ++LV  ++  EGLDIP  ++V      + G L +  S++Q  GRA
Sbjct  502  FDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRA  547


>sp|Q56243|UVRB_THET8 UvrABC system protein B OS=Thermus thermophilus 
(strain ATCC 27634 / DSM 579 / HB8) OX=300852 GN=uvrB 
PE=1 SV=2
Length=665

 Score = 37.0 bits (84),  Expect = 0.75, Method: Compositional matrix adjust.
 Identities = 35/131 (27%), Positives = 62/131 (47%), Gaps = 22/131 (17%)

Query  347  ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA  406
            EN  L+++E I +R   ++   R ++   T + A  L  +L +        IRA+ L   
Sbjct  423  ENQILDLMEGIRER---AARGERTLVTVLTVRMAEELTSFLVEH------GIRARYL---  470

Query  407  GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTN  461
                    +   ++Q +I+  + G  + LV  ++  EGLDIP  ++V      + G L +
Sbjct  471  -----HHELDAFERQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRS  525

Query  462  EISMVQARGRA  472
            E S++Q  GRA
Sbjct  526  ERSLIQTIGRA  536


>sp|Q5F931|UVRB_NEIG1 UvrABC system protein B OS=Neisseria gonorrhoeae 
(strain ATCC 700825 / FA 1090) OX=242231 GN=uvrB PE=3 
SV=1
Length=675

 Score = 37.0 bits (84),  Expect = 0.76, Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 7/106 (7%)

Query  372  IFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGT  431
            I  R ++    L+  L ++   Q  D  ++L I            +R   E+I+  + G 
Sbjct  444  INDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVER--VEIIRDLRLGL  501

Query  432  LNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
             ++LV  ++  EGLDIP  ++V      + G L +  S++Q  GRA
Sbjct  502  FDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRA  547


>sp|Q9PER1|UVRB_XYLFA UvrABC system protein B OS=Xylella fastidiosa 
(strain 9a5c) OX=160492 GN=uvrB PE=3 SV=1
Length=669

 Score = 37.0 bits (84),  Expect = 0.77, Method: Compositional matrix adjust.
 Identities = 28/109 (26%), Positives = 54/109 (50%), Gaps = 19/109 (17%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            R ++ T T++ A +L  +L +Q       IR + L         + +   ++ E+I+  +
Sbjct  448  RVLVTTLTKRMAENLTEYLSEQ------GIRIRYL--------HSEIDTVERVEIIRDLR  493

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
             G  ++LV  ++  EGLD+P  ++V      + G L +  S++Q  GRA
Sbjct  494  LGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTSSLIQTIGRA  542


>sp|Q75BS4|DHH1_EREGS ATP-dependent RNA helicase DHH1 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=DHH1 PE=3 SV=1
Length=484

 Score = 36.6 bits (83),  Expect = 0.78, Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 11/111 (10%)

Query  373  FTRTRQSAH---SLLLWLQQQQGL------QTVDIRAQLLIGAGNSSQSTH--MTQRDQQ  421
            F   RQ  H   +L   LQ  Q +        V++ A+ +   G S   +H  M Q+++ 
Sbjct  247  FVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERN  306

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA  472
            +V  +F+ G +  LV + +   G+DI   NVV+ +       + +   GR+
Sbjct  307  KVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRS  357


>sp|Q87AT6|UVRB_XYLFT UvrABC system protein B OS=Xylella fastidiosa 
(strain Temecula1 / ATCC 700964) OX=183190 GN=uvrB PE=3 
SV=1
Length=669

 Score = 36.6 bits (83),  Expect = 0.79, Method: Compositional matrix adjust.
 Identities = 28/109 (26%), Positives = 54/109 (50%), Gaps = 19/109 (17%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            R ++ T T++ A +L  +L +Q       IR + L         + +   ++ E+I+  +
Sbjct  448  RVLVTTLTKRMAENLTEYLSEQ------GIRIRYL--------HSEIDTVERVEIIRDLR  493

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
             G  ++LV  ++  EGLD+P  ++V      + G L +  S++Q  GRA
Sbjct  494  LGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTSSLIQTIGRA  542


>sp|B2I8F9|UVRB_XYLF2 UvrABC system protein B OS=Xylella fastidiosa 
(strain M23) OX=405441 GN=uvrB PE=3 SV=1
Length=669

 Score = 36.6 bits (83),  Expect = 0.79, Method: Compositional matrix adjust.
 Identities = 28/109 (26%), Positives = 54/109 (50%), Gaps = 19/109 (17%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            R ++ T T++ A +L  +L +Q       IR + L         + +   ++ E+I+  +
Sbjct  448  RVLVTTLTKRMAENLTEYLSEQ------GIRIRYL--------HSEIDTVERVEIIRDLR  493

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
             G  ++LV  ++  EGLD+P  ++V      + G L +  S++Q  GRA
Sbjct  494  LGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTSSLIQTIGRA  542


>sp|Q5GUR8|RHLB_XANOR ATP-dependent RNA helicase RhlB OS=Xanthomonas 
oryzae pv. oryzae (strain KACC10331 / KXO85) OX=291331 
GN=rhlB PE=3 SV=2
Length=574

 Score = 36.6 bits (83),  Expect = 0.79, Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 0/60 (0%)

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
            S  + Q+ ++ ++ +FQ G L +LVAT VA  GL I     V  Y L  +    V   GR
Sbjct  288  SGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGR  347


>sp|B0U4J3|UVRB_XYLFM UvrABC system protein B OS=Xylella fastidiosa 
(strain M12) OX=405440 GN=uvrB PE=3 SV=1
Length=669

 Score = 36.6 bits (83),  Expect = 0.80, Method: Compositional matrix adjust.
 Identities = 28/109 (26%), Positives = 54/109 (50%), Gaps = 19/109 (17%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            R ++ T T++ A +L  +L +Q       IR + L         + +   ++ E+I+  +
Sbjct  448  RVLVTTLTKRMAENLTEYLSEQ------GIRIRYL--------HSEIDTVERVEIIRDLR  493

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
             G  ++LV  ++  EGLD+P  ++V      + G L +  S++Q  GRA
Sbjct  494  LGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTSSLIQTIGRA  542


>sp|Q6A9K7|UVRB_CUTAK UvrABC system protein B OS=Cutibacterium 
acnes (strain DSM 16379 / KPA171202) OX=267747 GN=uvrB PE=3 
SV=1
Length=701

 Score = 36.6 bits (83),  Expect = 0.83, Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 34/56 (61%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E++++ + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  494  ELLKELRMGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTVGRA  549


>sp|Q47QN5|UVRB_THEFY UvrABC system protein B OS=Thermobifida 
fusca (strain YX) OX=269800 GN=uvrB PE=3 SV=1
Length=701

 Score = 36.6 bits (83),  Expect = 0.84, Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 34/56 (61%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E++++ + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  495  ELLRELRVGVFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRA  550


>sp|Q2NGT1|UVRB_METST UvrABC system protein B OS=Methanosphaera 
stadtmanae (strain ATCC 43021 / DSM 3091 / JCM 11832 / MCB-3) 
OX=339860 GN=uvrB PE=3 SV=1
Length=649

 Score = 36.6 bits (83),  Expect = 0.86, Method: Compositional matrix adjust.
 Identities = 18/65 (28%), Positives = 36/65 (55%), Gaps = 5/65 (8%)

Query  413  THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQ  467
            + ++  ++ E+I + + G  + LV  ++  EGLD+P   +V      + G L ++ S++Q
Sbjct  475  SEISTLERTEIIDELRRGDFDCLVGVNLLREGLDLPEVALVAILDADKEGFLRSQTSLIQ  534

Query  468  ARGRA  472
              GRA
Sbjct  535  TIGRA  539


>sp|Q8P4D4|RHLB_XANCP ATP-dependent RNA helicase RhlB OS=Xanthomonas 
campestris pv. campestris (strain ATCC 33913 / DSM 3586 
/ NCPPB 528 / LMG 568 / P 25) OX=190485 GN=rhlB PE=3 SV=1
Length=573

 Score = 36.6 bits (83),  Expect = 0.86, Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 0/60 (0%)

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
            S  + Q+ ++ ++ +FQ G L +LVAT VA  GL I     V  Y L  +    V   GR
Sbjct  288  SGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGR  347


>sp|B0RWT6|RHLB_XANCB ATP-dependent RNA helicase RhlB OS=Xanthomonas 
campestris pv. campestris (strain B100) OX=509169 GN=rhlB 
PE=3 SV=1
Length=573

 Score = 36.6 bits (83),  Expect = 0.86, Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 0/60 (0%)

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
            S  + Q+ ++ ++ +FQ G L +LVAT VA  GL I     V  Y L  +    V   GR
Sbjct  288  SGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGR  347


>sp|Q4UPY5|RHLB_XANC8 ATP-dependent RNA helicase RhlB OS=Xanthomonas 
campestris pv. campestris (strain 8004) OX=314565 GN=rhlB 
PE=3 SV=1
Length=573

 Score = 36.6 bits (83),  Expect = 0.86, Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 0/60 (0%)

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
            S  + Q+ ++ ++ +FQ G L +LVAT VA  GL I     V  Y L  +    V   GR
Sbjct  288  SGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGR  347


>sp|Q3ATT8|UVRB_CHLCH UvrABC system protein B OS=Chlorobium chlorochromatii 
(strain CaD3) OX=340177 GN=uvrB PE=3 SV=1
Length=681

 Score = 36.6 bits (83),  Expect = 0.87, Method: Compositional matrix adjust.
 Identities = 32/143 (22%), Positives = 76/143 (53%), Gaps = 20/143 (14%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRAR  473
            ++ +++++ + G +++LV  ++  EGLD+P  ++V      + G L N  S++Q  GRA 
Sbjct  488  ERMQILRELRAGDIDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNTRSLMQIAGRAA  547

Query  474  ADQSVYAFVATEGSRELKRELINEALETLMEQAV--AAVQKMDQAEY----QAKIRDLQQ  527
              +++  FV       L  ++I  +++ ++++     A+Q+    E+    ++ ++ + Q
Sbjct  548  --RNLDGFVV------LYADVITRSIQEVLDETARRRAIQQRYNEEHGITPRSIVKSVDQ  599

Query  528  AALTKRAAQAAQRENQRQQFPVE  550
               T   A A +R  +R++F +E
Sbjct  600  ILDTTGVADAEER-YRRRRFGLE  621


>sp|Q928A4|UVRB_LISIN UvrABC system protein B OS=Listeria innocua 
serovar 6a (strain ATCC BAA-680 / CLIP 11262) OX=272626 
GN=uvrB PE=3 SV=1
Length=658

 Score = 36.6 bits (83),  Expect = 0.88, Method: Compositional matrix adjust.
 Identities = 21/76 (28%), Positives = 42/76 (55%), Gaps = 9/76 (12%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRARADQ  476
            E+I+  + G  +++V  ++  EG+D+P  ++V      + G L +E S++Q  GRA  ++
Sbjct  486  EIIRDLRLGVYDVIVGINLLREGIDLPEVSLVAILDADKEGFLRSERSLIQTMGRAARNE  545

Query  477  S----VYAFVATEGSR  488
            +    +YA   T+  R
Sbjct  546  NGRVIMYADKMTDSMR  561


>sp|Q67T57|UVRB_SYMTH UvrABC system protein B OS=Symbiobacterium 
thermophilum (strain DSM 24528 / JCM 14929 / IAM 14863 / 
T) OX=292459 GN=uvrB PE=3 SV=1
Length=659

 Score = 36.6 bits (83),  Expect = 0.88, Method: Compositional matrix adjust.
 Identities = 18/59 (31%), Positives = 34/59 (58%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ ++++  + G  ++LV  ++  EGLDIP  ++V      + G L  E S++Q  GRA
Sbjct  484  ERMQIVRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRA  542


>sp|Q8Y4F5|UVRB_LISMO UvrABC system protein B OS=Listeria monocytogenes 
serovar 1/2a (strain ATCC BAA-679 / EGD-e) OX=169963 
GN=uvrB PE=3 SV=1
Length=658

 Score = 36.6 bits (83),  Expect = 0.90, Method: Compositional matrix adjust.
 Identities = 21/76 (28%), Positives = 42/76 (55%), Gaps = 9/76 (12%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRARADQ  476
            E+I+  + G  +++V  ++  EG+D+P  ++V      + G L +E S++Q  GRA  ++
Sbjct  486  EIIRDLRLGVYDVIVGINLLREGIDLPEVSLVAILDADKEGFLRSERSLIQTMGRAARNE  545

Query  477  S----VYAFVATEGSR  488
            +    +YA   T+  R
Sbjct  546  NGRVIMYADKMTDSMR  561


>sp|Q8SR01|DBP4_ENCCU ATP-dependent RNA helicase DBP4 OS=Encephalitozoon 
cuniculi (strain GB-M1) OX=284813 GN=DBP4 PE=3 SV=2
Length=449

 Score = 36.6 bits (83),  Expect = 0.90, Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 54/126 (43%), Gaps = 22/126 (17%)

Query  362  FSSSNSP-RGIIFTRTRQSA--HSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQR  418
            F  SN   +GI+F  T +    H LL         + + +R ++   +G       M+Q+
Sbjct  235  FIGSNPEVKGIVFFSTCKEVKFHCLLF--------ERLKLRNRIFCLSGG------MSQK  280

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA-----R  473
             + +V ++F      +L  T +   GLD P  +VV++Y    N  + V   GR      R
Sbjct  281  QRIDVFKRFVKEKNGILFCTDLGSRGLDFPKVDVVIQYDCPCNVETYVHRVGRTARNSER  340

Query  474  ADQSVY  479
             +  VY
Sbjct  341  GESYVY  346


>sp|Q71WT9|UVRB_LISMF UvrABC system protein B OS=Listeria monocytogenes 
serotype 4b (strain F2365) OX=265669 GN=uvrB PE=3 
SV=1
Length=658

 Score = 36.6 bits (83),  Expect = 0.91, Method: Compositional matrix adjust.
 Identities = 21/76 (28%), Positives = 42/76 (55%), Gaps = 9/76 (12%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRARADQ  476
            E+I+  + G  +++V  ++  EG+D+P  ++V      + G L +E S++Q  GRA  ++
Sbjct  486  EIIRDLRLGVYDVIVGINLLREGIDLPEVSLVAILDADKEGFLRSERSLIQTMGRAARNE  545

Query  477  S----VYAFVATEGSR  488
            +    +YA   T+  R
Sbjct  546  NGRVIMYADKMTDSMR  561


>sp|Q4HVW2|SPB4_GIBZE ATP-dependent rRNA helicase SPB4 OS=Gibberella 
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / 
NRRL 31084 / PH-1) OX=229533 GN=SPB4 PE=3 SV=1
Length=637

 Score = 36.6 bits (83),  Expect = 0.91, Method: Compositional matrix adjust.
 Identities = 28/97 (29%), Positives = 43/97 (44%), Gaps = 4/97 (4%)

Query  433  NLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA-RADQSVYAFVATEGSRELK  491
             +L+ T +A  GLDIP  ++VV+    ++    +   GRA RA +   A V     RE  
Sbjct  351  TILLTTDLAARGLDIPQVDLVVQIDAPSDPKVFIHRSGRAGRAGRKGLAVVMLHPGREED  410

Query  492  RELINEALET---LMEQAVAAVQKMDQAEYQAKIRDL  525
                 E  +T    +E+      + D AE+  K RD 
Sbjct  411  YVQFLEIRKTPIAPLEKPTITTSEDDAAEFAKKTRDF  447


>sp|Q58524|HELS_METJA ATP-dependent DNA helicase Hel308 OS=Methanocaldococcus 
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 
/ JCM 10045 / NBRC 100440) OX=243232 GN=hel308 PE=3 SV=1
Length=1195

 Score = 36.6 bits (83),  Expect = 0.91, Method: Compositional matrix adjust.
 Identities = 50/181 (28%), Positives = 81/181 (45%), Gaps = 23/181 (13%)

Query  1    MELRSYQWEVIMPAL--EGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG------AKVVV  52
            +ELR  Q + +   L  + KN +I +PT +GKT         HL  +DG       K + 
Sbjct  14   VELRPPQKKALERGLLDKNKNFLISIPTASGKTLIGEMALINHL--LDGNKNPTNKKGIF  71

Query  53   LVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALT  112
            +V    L ++  EEF+   +       LS  +G       L++ H L+I TAE     L 
Sbjct  72   IVPLKALASEKYEEFKSKYERYGLRIALS--IGDYDEDEDLSKYH-LIITTAE----KLD  124

Query  113  SPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLP-QVLGLTASPG  171
            S    +   +   S++VVDE H  + +T         LE+ L + +    Q++GL+A+ G
Sbjct  125  SLWRHKIDWINDVSVVVVDEIHLINDET-----RGGTLEILLTKLKEFNVQIIGLSATIG  179

Query  172  T  172
             
Sbjct  180  N  180


>sp|Q6FQQ6|IF4A_CANGA ATP-dependent RNA helicase eIF4A OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=TIF1 PE=3 SV=1
Length=396

 Score = 36.2 bits (82),  Expect = 0.92, Method: Compositional matrix adjust.
 Identities = 14/54 (26%), Positives = 35/54 (65%), Gaps = 0/54 (0%)

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE  462
            SS  + + Q+++  ++++F+ G+  +L++T +   G+D+   ++V+ Y L TN+
Sbjct  289  SSIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPTNK  342


>sp|O33395|UVRB_NEIMB UvrABC system protein B OS=Neisseria meningitidis 
serogroup B (strain ATCC BAA-335 / MC58) OX=122586 
GN=uvrB PE=3 SV=3
Length=675

 Score = 36.6 bits (83),  Expect = 0.92, Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 7/106 (7%)

Query  372  IFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGT  431
            I  R  +    L+  L ++   Q  D  ++L I            +R   E+I+  + G 
Sbjct  444  INDRIEKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVER--VEIIRDLRLGL  501

Query  432  LNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
             ++LV  ++  EGLDIP  ++V      + G L +  S++Q  GRA
Sbjct  502  FDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRA  547


>sp|Q2NJ77|UVRB_AYWBP UvrABC system protein B OS=Aster yellows 
witches'-broom phytoplasma (strain AYWB) OX=322098 GN=uvrB 
PE=3 SV=1
Length=667

 Score = 36.6 bits (83),  Expect = 0.94, Method: Compositional matrix adjust.
 Identities = 19/56 (34%), Positives = 31/56 (55%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+++  + G  + LV  ++  EGLD+P   +V      + G L NE S++Q  GRA
Sbjct  488  EILKDLRLGKYDCLVGVNLLREGLDLPEVALVAILDADKQGFLRNERSLIQTIGRA  543


>sp|Q971U1|XPB1_SULTO DNA 3'-5' helicase/translocase StoXPB1 OS=Sulfurisphaera 
tokodaii (strain DSM 16993 / JCM 10545 / NBRC 
100140 / 7) OX=273063 GN=xpb1 PE=1 SV=1
Length=543

 Score = 36.6 bits (83),  Expect = 0.95, Method: Compositional matrix adjust.
 Identities = 44/170 (26%), Positives = 72/170 (42%), Gaps = 32/170 (19%)

Query  2    ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVT  61
            ELR YQ E +   L+  + +I LPTGAGK             TV G K++  V +  L+ 
Sbjct  158  ELRDYQKEAVDTWLQRGSGVIALPTGAGK-------------TVIGIKIITEVRKSTLIV  204

Query  62   QHGEEFRRMLDGRWTVTTLSGDMGPRAGFG-HLARCHDLLICTAELLQMALTSPEEEEHV  120
               ++  +ML  +W    L      R+  G + +   ++   T      A    +E    
Sbjct  205  TFTKD--QML--QWRDAILKFTDANRSDIGLYYSEEKNIRPITITTYHTAYRHIDELSG-  259

Query  121  ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASP  170
                F L+++DE HH   D        ++ E+ L+      + LGL+A+P
Sbjct  260  ---KFELLIIDEAHHLPAD--------RFKEIALKCIA--SKRLGLSATP  296


 Score = 35.8 bits (81),  Expect = 1.6, Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 49/103 (48%), Gaps = 23/103 (22%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            KL+ L+ I+Q++    N  + +IFT+    A  +                A L+ G  N 
Sbjct  398  KLKALDDIIQKE----NGNKILIFTQYVDQAEEI-----------AKKYNAYLITGKTNK  442

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNV  452
            ++        ++++++ F+     +LV T+V +EGLDIP  NV
Sbjct  443  NE--------REKILRIFKTLKSGILVLTTVGDEGLDIPDANV  477


>sp|Q0UG00|MS116_PHANO ATP-dependent RNA helicase MSS116, mitochondrial 
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 
/ FGSC 10173) OX=321614 GN=MSS116 PE=3 SV=1
Length=550

 Score = 36.6 bits (83),  Expect = 0.96, Method: Compositional matrix adjust.
 Identities = 20/65 (31%), Positives = 35/65 (54%), Gaps = 1/65 (2%)

Query  413  THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-  471
            + M+Q  +     +F++ T  +L A+ V   G+D P+  +VV+ GL ++    V   GR 
Sbjct  365  SRMSQPMRTRTTAQFKEATSGILFASDVVGRGMDFPNVGLVVQLGLPSSTEQYVHRVGRT  424

Query  472  ARADQ  476
            ARA +
Sbjct  425  ARAGK  429


>sp|Q6YQE1|UVRB_ONYPE UvrABC system protein B OS=Onion yellows 
phytoplasma (strain OY-M) OX=262768 GN=uvrB PE=3 SV=2
Length=670

 Score = 36.6 bits (83),  Expect = 0.96, Method: Compositional matrix adjust.
 Identities = 19/56 (34%), Positives = 31/56 (55%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+++  + G  + LV  ++  EGLD+P   +V      + G L NE S++Q  GRA
Sbjct  488  EILKDLRLGKYDCLVGVNLLREGLDLPEVALVAILDADKQGFLRNERSLIQTIGRA  543


>sp|Q3AFF4|UVRB_CARHZ UvrABC system protein B OS=Carboxydothermus 
hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901) 
OX=246194 GN=uvrB PE=3 SV=1
Length=662

 Score = 36.6 bits (83),  Expect = 0.99, Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+++  + G  ++LV  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  485  EILRDLRLGVFDVLVGINLLREGLDLPEVSLVAILDADKEGYLRSERSLIQTIGRA  540


>sp|B7IEY7|UVRB_THEAB UvrABC system protein B OS=Thermosipho africanus 
(strain TCF52B) OX=484019 GN=uvrB PE=3 SV=1
Length=661

 Score = 36.6 bits (83),  Expect = 1.0, Method: Compositional matrix adjust.
 Identities = 23/86 (27%), Positives = 45/86 (52%), Gaps = 7/86 (8%)

Query  394  QTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN  451
            +T +  A+ LI  G  +   H  +   ++ EV++K + G + ++V  ++  EGLD+P  +
Sbjct  452  KTAEKLAEYLIEMGIKALYIHSELDTIERVEVLKKLRRGDVEVVVGVNLLREGLDLPEVS  511

Query  452  VVV-----RYGLLTNEISMVQARGRA  472
            +V        G L +E +++Q  GR 
Sbjct  512  LVAILDSDTEGFLRSETTLIQIIGRV  537


>sp|Q5Z6G5|RH35B_ORYSJ DEAD-box ATP-dependent RNA helicase 35B 
OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0697200 PE=3 
SV=1
Length=619

 Score = 36.2 bits (82),  Expect = 1.0, Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 41/81 (51%), Gaps = 5/81 (6%)

Query  396  VDIRAQLLIGAGNSSQSTHMTQRDQQ--EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV  453
            VD   + L+  G  + + H  + D++  +  + F+    ++LVAT VA +GLDIP    V
Sbjct  437  VDYIQEFLLLKGVEAVAIHGGKDDEERKDAFKSFKASEKDVLVATDVASKGLDIPDIQHV  496

Query  454  VRYGL---LTNEISMVQARGR  471
            + Y +   + N +  +   GR
Sbjct  497  INYDMPAEIENYVHRIGRTGR  517


>sp|P60843|IF4A1_MOUSE Eukaryotic initiation factor 4A-I OS=Mus 
musculus OX=10090 GN=Eif4a1 PE=1 SV=1
Length=406

 Score = 36.2 bits (82),  Expect = 1.0, Method: Compositional matrix adjust.
 Identities = 20/93 (22%), Positives = 45/93 (48%), Gaps = 14/93 (15%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            + +IF  TR+       WL ++   +   +          S+    M Q+++  ++++F+
Sbjct  274  QAVIFINTRRKVD----WLTEKMHARDFTV----------SAMHGDMDQKERDVIMREFR  319

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN  461
             G+  +L+ T +   G+D+   ++V+ Y L TN
Sbjct  320  SGSSRVLITTDLLARGIDVQQVSLVINYDLPTN  352


>sp|P60842|IF4A1_HUMAN Eukaryotic initiation factor 4A-I OS=Homo 
sapiens OX=9606 GN=EIF4A1 PE=1 SV=1
Length=406

 Score = 36.2 bits (82),  Expect = 1.0, Method: Compositional matrix adjust.
 Identities = 20/93 (22%), Positives = 45/93 (48%), Gaps = 14/93 (15%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            + +IF  TR+       WL ++   +   +          S+    M Q+++  ++++F+
Sbjct  274  QAVIFINTRRKVD----WLTEKMHARDFTV----------SAMHGDMDQKERDVIMREFR  319

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN  461
             G+  +L+ T +   G+D+   ++V+ Y L TN
Sbjct  320  SGSSRVLITTDLLARGIDVQQVSLVINYDLPTN  352


>sp|Q3SZ54|IF4A1_BOVIN Eukaryotic initiation factor 4A-I OS=Bos 
taurus OX=9913 GN=EIF4A1 PE=2 SV=1
Length=406

 Score = 36.2 bits (82),  Expect = 1.0, Method: Compositional matrix adjust.
 Identities = 20/93 (22%), Positives = 45/93 (48%), Gaps = 14/93 (15%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            + +IF  TR+       WL ++   +   +          S+    M Q+++  ++++F+
Sbjct  274  QAVIFINTRRKVD----WLTEKMHARDFTV----------SAMHGDMDQKERDVIMREFR  319

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN  461
             G+  +L+ T +   G+D+   ++V+ Y L TN
Sbjct  320  SGSSRVLITTDLLARGIDVQQVSLVINYDLPTN  352


>sp|A5DLR3|DBP10_PICGU ATP-dependent RNA helicase DBP10 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DBP10 PE=3 
SV=2
Length=914

 Score = 36.6 bits (83),  Expect = 1.1, Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 6/106 (6%)

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT--QRDQQEVIQKFQDGTLNLLV  436
            S HS ++++  +  ++ V     LL  AG+     + T  Q  +++ + +F+    N+LV
Sbjct  387  SEHSTIVFVPTKHHVEYV---TTLLRDAGHLVSYIYGTLDQHARKQQLYQFRAAYTNILV  443

Query  437  ATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF  481
             T VA  G+DIP    VV Y L  +    +   GR ARA    +A+
Sbjct  444  VTDVAARGIDIPVLANVVNYTLPGSSKIFIHRVGRTARAGNKGWAY  489


>sp|P29562|IF4A1_RABIT Eukaryotic initiation factor 4A-I (Fragment) 
OS=Oryctolagus cuniculus OX=9986 GN=EIF4A1 PE=1 SV=2
Length=398

 Score = 36.2 bits (82),  Expect = 1.1, Method: Compositional matrix adjust.
 Identities = 20/93 (22%), Positives = 45/93 (48%), Gaps = 14/93 (15%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            + +IF  TR+       WL ++   +   +          S+    M Q+++  ++++F+
Sbjct  266  QAVIFINTRRKVD----WLTEKMHARDFTV----------SAMHGDMDQKERDVIMREFR  311

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN  461
             G+  +L+ T +   G+D+   ++V+ Y L TN
Sbjct  312  SGSSRVLITTDLLARGIDVQQVSLVINYDLPTN  344


>sp|A9B464|UVRB_HERA2 UvrABC system protein B OS=Herpetosiphon 
aurantiacus (strain ATCC 23779 / DSM 785 / 114-95) OX=316274 
GN=uvrB PE=3 SV=1
Length=698

 Score = 36.2 bits (82),  Expect = 1.1, Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++++  + G  ++LV  ++  EGLD+P  ++V      + G L +E S+VQ  GRA
Sbjct  484  DILRDLRLGVFDVLVGINLLREGLDLPEVSLVAILDADKAGFLRSESSLVQIIGRA  539


>sp|A6UN73|HELS_METVS ATP-dependent DNA helicase Hel308 OS=Methanococcus 
vannielii (strain ATCC 35089 / DSM 1224 / JCM 13029 
/ OCM 148 / SB) OX=406327 GN=hel308 PE=3 SV=1
Length=751

 Score = 36.2 bits (82),  Expect = 1.1, Method: Compositional matrix adjust.
 Identities = 45/182 (25%), Positives = 80/182 (44%), Gaps = 27/182 (15%)

Query  2    ELRSYQWEVIMPAL--EGKNIIIWLPTGAGKTRAAAYVAKRHL----ETVDGAKVVVLVN  55
            ELR  Q +VI   L  + KN +I +PT +GKT         H+      + G K + +V 
Sbjct  15   ELRPPQKKVIEEGLLDKSKNFLICIPTASGKTLIGEMALLNHVLDENYNLTGKKGLFIVP  74

Query  56   RVHLVTQHGEEFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSP  114
               L ++  +EF++  +       +S GD   +         ++++I T+E L   +   
Sbjct  75   LKALASEKFDEFQKKYETYGIKVGMSIGDYDTKEDLSK----YNIIITTSEKLDSLM---  127

Query  115  EEEEHVE-LTVFSLIVVDECH---HTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASP  170
                ++E +   SL V+DE H      +     VI++     KL+      Q++GL+A+ 
Sbjct  128  --RHNIEWIKDLSLAVIDEIHLIGDNERGGTLEVILT-----KLKNIN--AQIVGLSATV  178

Query  171  GT  172
            G 
Sbjct  179  GN  180


>sp|Q1EB38|DBP10_COCIM ATP-dependent RNA helicase DBP10 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=DBP10 PE=3 SV=1
Length=927

 Score = 36.2 bits (82),  Expect = 1.1, Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 59/126 (47%), Gaps = 10/126 (8%)

Query  359  QRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MT  416
            +R+ S  N+P      +   + HS ++++  +     VD  A LL  +G +    +  + 
Sbjct  345  KRKRSEQNNPN----PQESPTEHSTIIFVATKH---HVDYIASLLRESGFAVSYAYGSLD  397

Query  417  QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARAD  475
            Q  ++  +  F+ G  N+LV T VA  G+DIP    V+ Y   +     V   GR ARA 
Sbjct  398  QTARKIQVSNFRTGISNILVVTDVAARGIDIPILENVINYDFPSQAKIFVHRVGRTARAG  457

Query  476  QSVYAF  481
            +  +++
Sbjct  458  RKGWSY  463


>sp|Q5R5F5|IF4A1_PONAB Eukaryotic initiation factor 4A-I OS=Pongo 
abelii OX=9601 GN=EIF4A1 PE=2 SV=1
Length=406

 Score = 36.2 bits (82),  Expect = 1.1, Method: Compositional matrix adjust.
 Identities = 20/93 (22%), Positives = 45/93 (48%), Gaps = 14/93 (15%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            + +IF  TR+       WL ++   +   +          S+    M Q+++  ++++F+
Sbjct  274  QAVIFINTRRKVD----WLTEKMHARDFTV----------SAMHGDMDQKERDVIMREFR  319

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN  461
             G+  +L+ T +   G+D+   ++V+ Y L TN
Sbjct  320  SGSSRVLITTDLLARGIDVQQVSLVINYDLPTN  352


>sp|A5A6N4|IF4A1_PANTR Eukaryotic initiation factor 4A-I OS=Pan 
troglodytes OX=9598 GN=EIF4A1 PE=2 SV=1
Length=406

 Score = 36.2 bits (82),  Expect = 1.1, Method: Compositional matrix adjust.
 Identities = 20/93 (22%), Positives = 45/93 (48%), Gaps = 14/93 (15%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            + +IF  TR+       WL ++   +   +          S+    M Q+++  ++++F+
Sbjct  274  QAVIFINTRRKVD----WLTEKMHARDFTV----------SAMHGDMDQKERDVIMREFR  319

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN  461
             G+  +L+ T +   G+D+   ++V+ Y L TN
Sbjct  320  SGSSRVLITTDLLARGIDVQQVSLVINYDLPTN  352


>sp|A1CFV3|DBP5_ASPCL ATP-dependent RNA helicase dbp5 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=dbp5 PE=3 SV=1
Length=487

 Score = 36.2 bits (82),  Expect = 1.1, Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 44/92 (48%), Gaps = 22/92 (24%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQS----THMTQRDQQEVIQK  426
            IIF +TR SA  +                 + ++  G++  S      +T+RD  E+I K
Sbjct  325  IIFVQTRTSASEI----------------EKRMVAEGHTVASLTGGIDVTKRD--EIIDK  366

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL  458
            F+ G   +L+ T+V   G+D+   ++V+ Y +
Sbjct  367  FRSGEAKVLITTNVLARGIDVSTVSMVINYDI  398


>sp|O74393|MAK5_SCHPO ATP-dependent RNA helicase mak5 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=mak5 
PE=1 SV=1
Length=648

 Score = 36.2 bits (82),  Expect = 1.1, Method: Compositional matrix adjust.
 Identities = 23/77 (30%), Positives = 40/77 (52%), Gaps = 2/77 (3%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR  473
            + Q+ + + ++KF++    +LV T VA  G+DIP    V+ Y +       V   GR AR
Sbjct  423  LDQKKRLQSLEKFKNNPKGVLVCTDVAARGIDIPSVTHVIHYHVPHTADMYVHRSGRTAR  482

Query  474  ADQSVYAFVATEGSREL  490
            A++   + +   G +EL
Sbjct  483  ANEDGVSILMC-GPKEL  498


>sp|Q6BP45|ROK1_DEBHA ATP-dependent RNA helicase ROK1 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / 
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=ROK1 PE=3 SV=2
Length=550

 Score = 36.2 bits (82),  Expect = 1.1, Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 4/71 (6%)

Query  416  TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR----  471
            T + + EVI++F+ G + +L+ T V   G+D    N+V+ Y +  +  + V   GR    
Sbjct  396  TPKQRDEVIKRFKSGDIWVLITTDVIARGVDFKGVNLVINYDVPQSAQAYVHRIGRTGRG  455

Query  472  ARADQSVYAFV  482
             +A ++V  F 
Sbjct  456  GKAGKAVTFFT  466


>sp|Q8VDW0|DX39A_MOUSE ATP-dependent RNA helicase DDX39A OS=Mus 
musculus OX=10090 GN=Ddx39a PE=1 SV=1
Length=427

 Score = 36.2 bits (82),  Expect = 1.2, Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 38/75 (51%), Gaps = 2/75 (3%)

Query  400  AQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG  457
            AQLL+     + + H  M Q ++    Q+F+D    +LVAT++   G+DI   N+V  Y 
Sbjct  303  AQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYD  362

Query  458  LLTNEISMVQARGRA  472
            +  +  + +    RA
Sbjct  363  MPEDSDTYLHRVARA  377


>sp|Q10I26|IF43B_ORYSJ Eukaryotic initiation factor 4A-III homolog 
B OS=Oryza sativa subsp. japonica OX=39947 GN=EIF4A3B PE=1 
SV=1
Length=404

 Score = 35.8 bits (81),  Expect = 1.2, Method: Compositional matrix adjust.
 Identities = 23/86 (27%), Positives = 39/86 (45%), Gaps = 3/86 (3%)

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE---ISM  465
            S+    M Q+++  ++ +F+ G   +L+ T V   GLD+   ++V+ Y L  N    I  
Sbjct  298  SAMHGDMPQKERDAIMGEFRSGATRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHR  357

Query  466  VQARGRARADQSVYAFVATEGSRELK  491
            +   GR         FV  E  R L+
Sbjct  358  IGRSGRFGRKGVAINFVKKEDIRILR  383


>sp|Q5VNM3|IF43A_ORYSJ Eukaryotic initiation factor 4A-III homolog 
A OS=Oryza sativa subsp. japonica OX=39947 GN=EIF4A3A PE=1 
SV=1
Length=404

 Score = 35.8 bits (81),  Expect = 1.2, Method: Compositional matrix adjust.
 Identities = 23/86 (27%), Positives = 39/86 (45%), Gaps = 3/86 (3%)

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE---ISM  465
            S+    M Q+++  ++ +F+ G   +L+ T V   GLD+   ++V+ Y L  N    I  
Sbjct  298  SAMHGDMPQKERDAIMGEFRSGATRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHR  357

Query  466  VQARGRARADQSVYAFVATEGSRELK  491
            +   GR         FV  E  R L+
Sbjct  358  IGRSGRFGRKGVAINFVKKEDIRILR  383


>sp|Q5U216|DX39A_RAT ATP-dependent RNA helicase DDX39A OS=Rattus 
norvegicus OX=10116 GN=Ddx39a PE=2 SV=1
Length=427

 Score = 36.2 bits (82),  Expect = 1.2, Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 38/75 (51%), Gaps = 2/75 (3%)

Query  400  AQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG  457
            AQLL+     + + H  M Q ++    Q+F+D    +LVAT++   G+DI   N+V  Y 
Sbjct  303  AQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYD  362

Query  458  LLTNEISMVQARGRA  472
            +  +  + +    RA
Sbjct  363  MPEDSDTYLHRVARA  377


>sp|F1LNJ2|U520_RAT U5 small nuclear ribonucleoprotein 200 kDa 
helicase OS=Rattus norvegicus OX=10116 GN=Snrnp200 PE=1 SV=1
Length=2139

 Score = 36.6 bits (83),  Expect = 1.2, Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 61/148 (41%), Gaps = 16/148 (11%)

Query  3    LRSYQWEVIMPALE-GKNIIIWLPTGAGKTRAAAYVAKRHLE---------TVDGAKVVV  52
            L   Q ++   ALE  +N+++  PTGAGKT  A     R +           VD  K++ 
Sbjct  481  LNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIY  540

Query  53   LVNRVHLVTQHGEEF-RRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMAL  111
            +     LV +    F +R+     TV  L+GD               +++CT E   +  
Sbjct  541  IAPMRSLVQEMVGSFGKRLATYGITVAELTGD---HQLCKEEISATQIIVCTPEKWDIIT  597

Query  112  TSPEEEEHVELTVFSLIVVDECHHTHKD  139
                E  + +L    LIV+DE H  H D
Sbjct  598  RKGGERTYTQLV--RLIVLDEIHLLHDD  623


>sp|P0CR06|DBP10_CRYNJ ATP-dependent RNA helicase DBP10 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=DBP10 PE=3 SV=1
Length=802

 Score = 36.2 bits (82),  Expect = 1.2, Method: Compositional matrix adjust.
 Identities = 34/126 (27%), Positives = 55/126 (44%), Gaps = 21/126 (17%)

Query  365  SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ--STHMTQRDQQE  422
            S++P+ I+F  T+                  VD  A+LL   G  +    + + Q  +Q+
Sbjct  303  SSAPQAIVFVATKHH----------------VDYVAELLRTTGYRTSLIYSSLDQVARQQ  346

Query  423  VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQ--SVY  479
             +  F+    ++LV T VA  GLDIP  + V+ Y         V   GR ARA +  + Y
Sbjct  347  QLAGFRSHQSDVLVVTDVAARGLDIPIMDHVINYDFPAGPRIFVHRVGRTARAGRKGTAY  406

Query  480  AFVATE  485
            + +  E
Sbjct  407  SLIVKE  412


>sp|P0CR07|DBP10_CRYNB ATP-dependent RNA helicase DBP10 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=DBP10 PE=3 SV=1
Length=802

 Score = 36.2 bits (82),  Expect = 1.2, Method: Compositional matrix adjust.
 Identities = 34/126 (27%), Positives = 55/126 (44%), Gaps = 21/126 (17%)

Query  365  SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ--STHMTQRDQQE  422
            S++P+ I+F  T+                  VD  A+LL   G  +    + + Q  +Q+
Sbjct  303  SSAPQAIVFVATKHH----------------VDYVAELLRTTGYRTSLIYSSLDQVARQQ  346

Query  423  VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQ--SVY  479
             +  F+    ++LV T VA  GLDIP  + V+ Y         V   GR ARA +  + Y
Sbjct  347  QLAGFRSHQSDVLVVTDVAARGLDIPIMDHVINYDFPAGPRIFVHRVGRTARAGRKGTAY  406

Query  480  AFVATE  485
            + +  E
Sbjct  407  SLIVKE  412


>sp|O00148|DX39A_HUMAN ATP-dependent RNA helicase DDX39A OS=Homo 
sapiens OX=9606 GN=DDX39A PE=1 SV=2
Length=427

 Score = 35.8 bits (81),  Expect = 1.2, Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 38/75 (51%), Gaps = 2/75 (3%)

Query  400  AQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG  457
            AQLL+     + + H  M Q ++    Q+F+D    +LVAT++   G+DI   N+V  Y 
Sbjct  303  AQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYD  362

Query  458  LLTNEISMVQARGRA  472
            +  +  + +    RA
Sbjct  363  MPEDSDTYLHRVARA  377


>sp|Q9LFN6|RH56_ARATH DEAD-box ATP-dependent RNA helicase 56 OS=Arabidopsis 
thaliana OX=3702 GN=RH56 PE=1 SV=2
Length=427

 Score = 35.8 bits (81),  Expect = 1.2, Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 2/74 (3%)

Query  401  QLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL  458
            +LL+     S   H  M+Q ++    + F++G   +LVAT +   G+DI   N+V+ Y +
Sbjct  306  KLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDM  365

Query  459  LTNEISMVQARGRA  472
              +  + +   GRA
Sbjct  366  PDSADTYLHRVGRA  379


>sp|Q56XG6|RH15_ARATH DEAD-box ATP-dependent RNA helicase 15 OS=Arabidopsis 
thaliana OX=3702 GN=RH15 PE=1 SV=3
Length=427

 Score = 35.8 bits (81),  Expect = 1.2, Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 2/74 (3%)

Query  401  QLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL  458
            +LL+     S   H  M+Q ++    + F++G   +LVAT +   G+DI   N+V+ Y +
Sbjct  306  KLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDM  365

Query  459  LTNEISMVQARGRA  472
              +  + +   GRA
Sbjct  366  PDSADTYLHRVGRA  379


>sp|Q1E5R1|DHH1_COCIM ATP-dependent RNA helicase DHH1 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=DHH1 PE=3 SV=1
Length=512

 Score = 36.2 bits (82),  Expect = 1.2, Method: Compositional matrix adjust.
 Identities = 32/119 (27%), Positives = 52/119 (44%), Gaps = 15/119 (13%)

Query  369  RGII----FTRTRQSAH---SLLLWLQQQQGL------QTVDIRAQLLIGAGNSSQSTH-  414
            RGI     F   RQ  H   +L   LQ  Q +        V++ A+ +   G S   +H 
Sbjct  257  RGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHA  316

Query  415  -MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA  472
             M Q+++  V   F++G    LV + +   G+DI   NVV+ +    N  + +   GR+
Sbjct  317  RMLQQNRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRS  375


>sp|Q6P4T2|U520_MOUSE U5 small nuclear ribonucleoprotein 200 kDa 
helicase OS=Mus musculus OX=10090 GN=Snrnp200 PE=1 SV=1
Length=2136

 Score = 36.2 bits (82),  Expect = 1.2, Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 61/148 (41%), Gaps = 16/148 (11%)

Query  3    LRSYQWEVIMPALE-GKNIIIWLPTGAGKTRAAAYVAKRHLE---------TVDGAKVVV  52
            L   Q ++   ALE  +N+++  PTGAGKT  A     R +           VD  K++ 
Sbjct  481  LNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIY  540

Query  53   LVNRVHLVTQHGEEF-RRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMAL  111
            +     LV +    F +R+     TV  L+GD               +++CT E   +  
Sbjct  541  IAPMRSLVQEMVGSFGKRLATYGITVAELTGD---HQLCKEEISATQIIVCTPEKWDIIT  597

Query  112  TSPEEEEHVELTVFSLIVVDECHHTHKD  139
                E  + +L    LIV+DE H  H D
Sbjct  598  RKGGERTYTQLV--RLIVLDEIHLLHDD  623


>sp|A2QRY2|DBP10_ASPNC ATP-dependent RNA helicase dbp10 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=dbp10 PE=3 SV=1
Length=932

 Score = 36.2 bits (82),  Expect = 1.2, Method: Compositional matrix adjust.
 Identities = 20/59 (34%), Positives = 31/59 (53%), Gaps = 1/59 (2%)

Query  424  IQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF  481
            +  F+ G  N+LV T VA  G+DIP    V+ Y   +     V   GR ARA ++ +++
Sbjct  417  VHNFRTGISNILVVTDVAARGIDIPILANVINYDFPSQAKIFVHRVGRTARAGRTGWSY  475


>sp|Q6BT27|FAL1_DEBHA ATP-dependent RNA helicase FAL1 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / 
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=FAL1 PE=3 SV=1
Length=399

 Score = 35.8 bits (81),  Expect = 1.2, Method: Compositional matrix adjust.
 Identities = 16/58 (28%), Positives = 33/58 (57%), Gaps = 0/58 (0%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA  472
            M Q ++  ++  F+ G   +L++T V   G+D+   ++V+ Y L T++ + V   GR+
Sbjct  299  MKQDERDSIMNDFRTGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENYVHRIGRS  356


>sp|Q9W3Y5|Y4443_DROME Putative ATP-dependent RNA helicase CG14443 
OS=Drosophila melanogaster OX=7227 GN=CG14443 PE=3 SV=2
Length=736

 Score = 36.2 bits (82),  Expect = 1.3, Method: Compositional matrix adjust.
 Identities = 18/57 (32%), Positives = 26/57 (46%), Gaps = 0/57 (0%)

Query  416  TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA  472
            T ++ Q +I  F  G  N++VAT +    LD+P    V+ Y    N    VQ   R 
Sbjct  613  TAQENQGIIHDFGTGAYNIIVATQMTSNCLDVPGIRYVINYDFPDNIDKYVQRMSRT  669


>sp|Q0CL13|DBP3_ASPTN ATP-dependent RNA helicase dbp3 OS=Aspergillus 
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=dbp3 
PE=3 SV=1
Length=493

 Score = 35.8 bits (81),  Expect = 1.3, Method: Compositional matrix adjust.
 Identities = 35/121 (29%), Positives = 54/121 (45%), Gaps = 12/121 (10%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL-LTNE--ISMVQARGR  471
            ++Q+++   +  F+ G   +LVAT VA  GLDIP   +V+     LT E  +  +   GR
Sbjct  362  LSQQERFRSLDAFKTGAATVLVATDVAARGLDIPAVKLVINVTFPLTVEDYVHRIGRTGR  421

Query  472  ARADQSVYAFVATEGSRELKRELIN-------EALETLMEQAVAAVQKMDQAEYQAKIRD  524
            A A+        TE  +     LIN       E  E L++     V+K     Y A  +D
Sbjct  422  AGAEGHAITLF-TETDKAQSGALINVLKAAGQEVPEELLKFG-GTVKKKQHDAYGAFFKD  479

Query  525  L  525
            +
Sbjct  480  V  480


>sp|Q6CIR0|DBP10_KLULA ATP-dependent RNA helicase DBP10 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / 
NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=DBP10 PE=3 SV=1
Length=973

 Score = 36.2 bits (82),  Expect = 1.3, Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR  473
            + Q  +++ +  F+ G  ++LV T VA  G+DIP    V+ Y L  +    +   GR AR
Sbjct  452  LNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRTAR  511

Query  474  ADQSVYAF  481
            A    +AF
Sbjct  512  AGNRGWAF  519


>sp|Q1EB85|DBP5_COCIM ATP-dependent RNA helicase DBP5 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=DBP5 PE=3 SV=1
Length=495

 Score = 35.8 bits (81),  Expect = 1.3, Method: Compositional matrix adjust.
 Identities = 28/113 (25%), Positives = 53/113 (47%), Gaps = 25/113 (22%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS--SQSTHMTQRDQQEVIQKFQ  428
            IIF +TR SA  +                 + ++  G++  S +  +  + + E+I +F+
Sbjct  338  IIFVKTRASAAEI----------------ERRMVAEGHTVVSLTGGIEGQKRDEIIDRFR  381

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRAR--ADQSVY  479
            +GT  +L+ T+V   G+D+   ++V+ Y     +I  +   G AR  AD   Y
Sbjct  382  NGTAKVLITTNVLARGIDVSTVSMVINY-----DIPELHLPGAARRMADAQTY  429


>sp|A5A6J2|DDX5_PANTR Probable ATP-dependent RNA helicase DDX5 
OS=Pan troglodytes OX=9598 GN=DDX5 PE=2 SV=1
Length=614

 Score = 36.2 bits (82),  Expect = 1.3, Method: Compositional matrix adjust.
 Identities = 19/68 (28%), Positives = 36/68 (53%), Gaps = 1/68 (1%)

Query  416  TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA  474
            +Q+++  V+ +F+ G   +L+AT VA  GLD+     V+ Y    +    +   GR AR+
Sbjct  376  SQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARS  435

Query  475  DQSVYAFV  482
             ++  A+ 
Sbjct  436  TKTGTAYT  443


>sp|Q5ANB2|DBP10_CANAL ATP-dependent RNA helicase DBP10 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DBP10 
PE=3 SV=1
Length=908

 Score = 36.2 bits (82),  Expect = 1.3, Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 6/106 (6%)

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT--QRDQQEVIQKFQDGTLNLLV  436
            S HS ++++  +  ++ V    +LL  AG      + T  Q  ++  + +F+ G  N+LV
Sbjct  393  SPHSTIVFVPTKHHVEYV---TKLLRDAGYLVSYIYGTLDQHARKNQLYQFRVGLTNVLV  449

Query  437  ATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF  481
             T VA  G+DIP    V+ + L  +    +   GR ARA    +A+
Sbjct  450  VTDVAARGIDIPVLANVINFTLPASSKIFIHRVGRTARAGNKGWAY  495


>sp|Q5R4I9|DDX5_PONAB Probable ATP-dependent RNA helicase DDX5 
OS=Pongo abelii OX=9601 GN=DDX5 PE=2 SV=1
Length=614

 Score = 36.2 bits (82),  Expect = 1.3, Method: Compositional matrix adjust.
 Identities = 19/68 (28%), Positives = 36/68 (53%), Gaps = 1/68 (1%)

Query  416  TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA  474
            +Q+++  V+ +F+ G   +L+AT VA  GLD+     V+ Y    +    +   GR AR+
Sbjct  376  SQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARS  435

Query  475  DQSVYAFV  482
             ++  A+ 
Sbjct  436  TKTGTAYT  443


>sp|C5BV49|UVRB_BEUC1 UvrABC system protein B OS=Beutenbergia 
cavernae (strain ATCC BAA-8 / DSM 12333 / CCUG 43141 / JCM 11478 
/ NBRC 16432 / NCIMB 13614 / HKI 0122) OX=471853 GN=uvrB 
PE=3 SV=1
Length=698

 Score = 36.2 bits (82),  Expect = 1.3, Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E++++ + G  ++LV  ++  EGLD+P  ++V      + G L +  S++Q  GRA
Sbjct  494  ELLRELRTGVFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRA  549


>sp|Q6C0X2|DHH1_YARLI ATP-dependent RNA helicase DHH1 OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DHH1 PE=3 
SV=1
Length=522

 Score = 35.8 bits (81),  Expect = 1.3, Method: Compositional matrix adjust.
 Identities = 22/79 (28%), Positives = 39/79 (49%), Gaps = 2/79 (3%)

Query  396  VDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV  453
            V++ A+ +   G S   +H  M Q  +  V  +F++GT   LV + +   G+DI   NVV
Sbjct  278  VELLARKITELGYSCYYSHAKMIQSHRNRVFHEFRNGTCRNLVCSDLLTRGIDIQAVNVV  337

Query  454  VRYGLLTNEISMVQARGRA  472
            + +    N  + +   GR+
Sbjct  338  INFDFPKNAETYLHRIGRS  356


>sp|Q61656|DDX5_MOUSE Probable ATP-dependent RNA helicase DDX5 
OS=Mus musculus OX=10090 GN=Ddx5 PE=1 SV=2
Length=614

 Score = 35.8 bits (81),  Expect = 1.3, Method: Compositional matrix adjust.
 Identities = 19/68 (28%), Positives = 36/68 (53%), Gaps = 1/68 (1%)

Query  416  TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA  474
            +Q+++  V+ +F+ G   +L+AT VA  GLD+     V+ Y    +    +   GR AR+
Sbjct  376  SQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARS  435

Query  475  DQSVYAFV  482
             ++  A+ 
Sbjct  436  TKTGTAYT  443


>sp|Q94A52|RH2_ARATH Eukaryotic initiation factor 4A-III homolog 
OS=Arabidopsis thaliana OX=3702 GN=EIF4A3 PE=1 SV=2
Length=408

 Score = 35.8 bits (81),  Expect = 1.4, Method: Compositional matrix adjust.
 Identities = 17/64 (27%), Positives = 33/64 (52%), Gaps = 0/64 (0%)

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
            SS    M Q+++  ++ +F+ G   +L+ T V   G+D+   ++V+ Y L  N    +  
Sbjct  302  SSMHGDMPQKERDAIMNEFRSGDSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHR  361

Query  469  RGRA  472
             GR+
Sbjct  362  IGRS  365


>sp|P17844|DDX5_HUMAN Probable ATP-dependent RNA helicase DDX5 
OS=Homo sapiens OX=9606 GN=DDX5 PE=1 SV=1
Length=614

 Score = 35.8 bits (81),  Expect = 1.4, Method: Compositional matrix adjust.
 Identities = 19/68 (28%), Positives = 36/68 (53%), Gaps = 1/68 (1%)

Query  416  TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA  474
            +Q+++  V+ +F+ G   +L+AT VA  GLD+     V+ Y    +    +   GR AR+
Sbjct  376  SQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARS  435

Query  475  DQSVYAFV  482
             ++  A+ 
Sbjct  436  TKTGTAYT  443


>sp|A7HKC0|UVRB_FERNB UvrABC system protein B OS=Fervidobacterium 
nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) OX=381764 
GN=uvrB PE=3 SV=1
Length=661

 Score = 35.8 bits (81),  Expect = 1.4, Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            EV++K + G ++++V  ++  EGLD+P  ++V        G L +E +++Q  GR 
Sbjct  483  EVLKKLRAGEIDVVVGVNLLREGLDLPEVSLVAILDADTEGFLRSETTLIQIIGRT  538


>sp|A3GFV3|FAL1_PICST ATP-dependent RNA helicase FAL1 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=FAL1 PE=3 SV=1
Length=399

 Score = 35.8 bits (81),  Expect = 1.4, Method: Compositional matrix adjust.
 Identities = 15/58 (26%), Positives = 33/58 (57%), Gaps = 0/58 (0%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA  472
            M Q ++  ++  F+ G   +L++T V   G+D+   ++V+ Y L T++ + +   GR+
Sbjct  299  MKQDERDSIMNDFRTGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENYIHRIGRS  356


>sp|Q7VFX7|UVRB_HELHP UvrABC system protein B OS=Helicobacter 
hepaticus (strain ATCC 51449 / 3B1) OX=235279 GN=uvrB PE=3 SV=1
Length=658

 Score = 35.8 bits (81),  Expect = 1.4, Method: Compositional matrix adjust.
 Identities = 16/59 (27%), Positives = 34/59 (58%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++  +I+  + G  ++L+  ++  EGLD+P  +++      + G L +E S++Q  GRA
Sbjct  486  ERNHLIRALRLGEFDVLIGINLLREGLDLPEVSLIAIMDADKEGFLRSETSLIQTMGRA  544


>sp|Q8GXD6|RH49_ARATH DEAD-box ATP-dependent RNA helicase 49 OS=Arabidopsis 
thaliana OX=3702 GN=RH49 PE=2 SV=2
Length=558

 Score = 35.8 bits (81),  Expect = 1.4, Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query  412  STH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY  456
            STH  M Q+ +   +  F + +  +L+ T VA  GLDIP  + VV+Y
Sbjct  298  STHGKMDQKGRDTALASFTEASSGVLLCTDVAARGLDIPGIDYVVQY  344


>sp|Q9Y2R4|DDX52_HUMAN Probable ATP-dependent RNA helicase DDX52 
OS=Homo sapiens OX=9606 GN=DDX52 PE=1 SV=4
Length=599

 Score = 35.8 bits (81),  Expect = 1.4, Method: Compositional matrix adjust.
 Identities = 22/83 (27%), Positives = 39/83 (47%), Gaps = 2/83 (2%)

Query  416  TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA  474
            TQ+ +   +  F+ G + +L+ T++   G+D    N+V+ Y   T+ +  +   GR  RA
Sbjct  447  TQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRA  506

Query  475  DQSVYAFV-ATEGSRELKRELIN  496
                 A    TE  + L R + N
Sbjct  507  GNKGKAITFFTEDDKPLLRSVAN  529


>sp|Q821H8|UVRB_CHLCV UvrABC system protein B OS=Chlamydia caviae 
(strain ATCC VR-813 / DSM 19441 / 03DC25 / GPIC) OX=227941 
GN=uvrB PE=3 SV=1
Length=656

 Score = 35.8 bits (81),  Expect = 1.4, Method: Compositional matrix adjust.
 Identities = 33/149 (22%), Positives = 73/149 (49%), Gaps = 22/149 (15%)

Query  352  EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ  411
            ++LE+I +R   S +  + ++ + T++ A  +  +L +      +DI A  L     +++
Sbjct  429  DLLEEIRKRL--SKSQEKILVISITKKLAEDIAAFLSE------LDIAAAYLHSGIETAE  480

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMV  466
             T         ++   + G +++L+  ++  EGLD+P  ++V      + G L +  S++
Sbjct  481  RTR--------ILADLRLGNIDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSTSSLI  532

Query  467  QARGR-ARADQSVYAFVATEGSRELKREL  494
            Q  GR AR  +    F A + +R +++ L
Sbjct  533  QFCGRAARNVEGKVIFYADQKTRSIEQTL  561


>sp|B3EMK1|UVRB_CHLPB UvrABC system protein B OS=Chlorobium phaeobacteroides 
(strain BS1) OX=331678 GN=uvrB PE=3 SV=1
Length=690

 Score = 35.8 bits (81),  Expect = 1.4, Method: Compositional matrix adjust.
 Identities = 16/59 (27%), Positives = 36/59 (61%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ +++++ + G +++LV  ++  EGLD+P  ++V      + G L +  S++Q  GRA
Sbjct  488  ERMQILRELRTGEIDILVGVNLLREGLDLPEVSLVAILDADKEGFLRDSKSLMQIAGRA  546


>sp|Q4IF76|DBP2_GIBZE ATP-dependent RNA helicase DBP2 OS=Gibberella 
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / 
NRRL 31084 / PH-1) OX=229533 GN=DBP2 PE=3 SV=2
Length=554

 Score = 35.8 bits (81),  Expect = 1.5, Method: Compositional matrix adjust.
 Identities = 23/83 (28%), Positives = 41/83 (49%), Gaps = 4/83 (5%)

Query  417  QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE---ISMVQARGRAR  473
            Q ++  V+ +F+ G   ++VAT VA  G+D+ +   V+ Y    N    I  +   GRA 
Sbjct  419  QNERDWVLDQFKTGKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAG  478

Query  474  ADQSVYAFVATEGSRELKRELIN  496
            A  +      T+  ++  R+L+N
Sbjct  479  AMGTAITLFTTDNQKQ-ARDLVN  500


>sp|Q0U8V9|DBP8_PHANO ATP-dependent RNA helicase DBP8 OS=Phaeosphaeria 
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) 
OX=321614 GN=DBP8 PE=3 SV=1
Length=508

 Score = 35.8 bits (81),  Expect = 1.5, Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 34/63 (54%), Gaps = 1/63 (2%)

Query  413  THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-  471
            + + Q+D+   + +F+     +LVAT VA  GLDIP   +VV + +  +    +   GR 
Sbjct  363  SGLKQQDRISNLARFRAQAARILVATDVAARGLDIPEVGLVVNFDVPRDPDDYIHRVGRT  422

Query  472  ARA  474
            ARA
Sbjct  423  ARA  425


>sp|P0CQ72|FAL1_CRYNJ ATP-dependent RNA helicase FAL1 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=FAL1 PE=3 SV=1
Length=396

 Score = 35.8 bits (81),  Expect = 1.5, Method: Compositional matrix adjust.
 Identities = 17/64 (27%), Positives = 35/64 (55%), Gaps = 0/64 (0%)

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
            SS    M Q+++  ++ +F+ G   +L+ T V   G+D+   ++V+ Y L T+  + +  
Sbjct  290  SSMHGEMVQKERDAIMAEFRGGQSRVLITTDVWARGIDVQQVSLVINYDLPTSRENYLHR  349

Query  469  RGRA  472
             GR+
Sbjct  350  IGRS  353


>sp|P0CQ73|FAL1_CRYNB ATP-dependent RNA helicase FAL1 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=FAL1 PE=3 SV=1
Length=396

 Score = 35.8 bits (81),  Expect = 1.5, Method: Compositional matrix adjust.
 Identities = 17/64 (27%), Positives = 35/64 (55%), Gaps = 0/64 (0%)

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
            SS    M Q+++  ++ +F+ G   +L+ T V   G+D+   ++V+ Y L T+  + +  
Sbjct  290  SSMHGEMVQKERDAIMAEFRGGQSRVLITTDVWARGIDVQQVSLVINYDLPTSRENYLHR  349

Query  469  RGRA  472
             GR+
Sbjct  350  IGRS  353


>sp|A7TJ36|DBP3_VANPO ATP-dependent RNA helicase DBP3 OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=DBP3 PE=3 SV=1
Length=530

 Score = 35.8 bits (81),  Expect = 1.5, Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 63/131 (48%), Gaps = 13/131 (10%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL-LTNE--ISMVQARGR  471
            ++Q+ +   + +F+ G  ++L+AT VA  GLDIP+   V+     LT E  +  +   GR
Sbjct  400  LSQQQRTNALDEFKTGRSSILLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGR  459

Query  472  ARADQSVYAFVATEGSRELKRELIN------EALETLMEQAVAAVQKMDQAEYQAKIRDL  525
            A    + +    TE  + L   L+N      + +   +++     +K + + Y A  +D+
Sbjct  460  AGKTGTAHTLF-TEQEKHLAGSLVNVLNGAGQPVPEELKKFGTHTKKKEHSAYGAFYKDV  518

Query  526  QQAALTKRAAQ  536
                +TK+A +
Sbjct  519  D---MTKKAKK  526


>sp|B7J0S9|UVRB_BORBZ UvrABC system protein B OS=Borreliella burgdorferi 
(strain ZS7) OX=445985 GN=uvrB PE=3 SV=1
Length=668

 Score = 35.8 bits (81),  Expect = 1.5, Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 7/80 (9%)

Query  400  AQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV---  454
             + L+  G  ++  H  +   ++ EVI   +   ++++V  ++  EGLDIP  ++V    
Sbjct  461  TEYLVNLGVRAKYLHSELDTLERVEVISLLRKSEIDVIVGINLLREGLDIPEVSLVAILD  520

Query  455  --RYGLLTNEISMVQARGRA  472
              + G L +  S++Q  GRA
Sbjct  521  ADKVGFLRSTTSLIQTIGRA  540


>sp|A5CRU3|UVRB_CLAM3 UvrABC system protein B OS=Clavibacter michiganensis 
subsp. michiganensis (strain NCPPB 382) OX=443906 
GN=uvrB PE=3 SV=1
Length=688

 Score = 35.8 bits (81),  Expect = 1.5, Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 40/73 (55%), Gaps = 9/73 (12%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRARADQ  476
            E++ + + G  ++LV  ++  EGLD+P  ++V      + G L +  S++Q  GRA  + 
Sbjct  490  ELLSELRAGVYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSTSLIQTIGRAARNV  549

Query  477  S----VYAFVATE  485
            S    +YA V T+
Sbjct  550  SGEVHMYADVLTD  562


>sp|Q59ZH9|MAK5_CANAL ATP-dependent RNA helicase MAK5 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=MAK5 
PE=3 SV=2
Length=782

 Score = 35.8 bits (81),  Expect = 1.5, Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 38/67 (57%), Gaps = 5/67 (7%)

Query  413  THMTQRDQQEVIQKFQDGT----LNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
            + M Q+ +   ++KF++ +    + +LVA+ VA  GLDIP+ + VV Y L  +    +  
Sbjct  519  SSMIQKQRLRALEKFKEASQKNEVAVLVASDVAARGLDIPNIDHVVHYHLPRSADVYIHR  578

Query  469  RGR-ARA  474
             GR ARA
Sbjct  579  SGRTARA  585


>sp|Q9H8H2|DDX31_HUMAN ATP-dependent DNA helicase DDX31 OS=Homo 
sapiens OX=9606 GN=DDX31 PE=1 SV=2
Length=851

 Score = 35.8 bits (81),  Expect = 1.6, Method: Compositional matrix adjust.
 Identities = 17/57 (30%), Positives = 28/57 (49%), Gaps = 0/57 (0%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
            M Q ++  V Q+F      +L+ T VA  GLD+P    +V+Y   ++    +   GR
Sbjct  562  MEQEERTAVFQEFSHSRRGVLLCTDVAARGLDLPQVTWIVQYNAPSSPAEYIHRIGR  618


>sp|O51776|UVRB_BORBU UvrABC system protein B OS=Borreliella burgdorferi 
(strain ATCC 35210 / DSM 4680 / CIP 102532 / B31) 
OX=224326 GN=uvrB PE=3 SV=1
Length=673

 Score = 35.8 bits (81),  Expect = 1.6, Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 7/80 (9%)

Query  400  AQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV---  454
             + L+  G  ++  H  +   ++ EVI   +   ++++V  ++  EGLDIP  ++V    
Sbjct  466  TEYLVNLGVRAKYLHSELDTLERVEVISLLRKSEIDVIVGINLLREGLDIPEVSLVAILD  525

Query  455  --RYGLLTNEISMVQARGRA  472
              + G L +  S++Q  GRA
Sbjct  526  ADKVGFLRSTTSLIQTIGRA  545


>sp|Q2HFP1|IF4A_CHAGB ATP-dependent RNA helicase eIF4A OS=Chaetomium 
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / 
NBRC 6347 / NRRL 1970) OX=306901 GN=TIF1 PE=3 SV=1
Length=397

 Score = 35.4 bits (80),  Expect = 1.6, Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 54/115 (47%), Gaps = 18/115 (16%)

Query  347  ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA  406
            E+ KL+ L  +    + +    + +IF  TR+       WL  +  LQ  D     + G 
Sbjct  247  EDWKLDTLSDL----YETVTITQAVIFCNTRRKVD----WLTDK--LQARDFTVSAMHGD  296

Query  407  GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN  461
             +       TQRD   ++++F+ G+  +L+AT +   G+D+   ++V+ Y L  N
Sbjct  297  MDQ------TQRDL--IMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPAN  343


>sp|Q65ZT8|UVRB_BORGP UvrABC system protein B OS=Borrelia garinii 
subsp. bavariensis (strain ATCC BAA-2496 / DSM 23469 / PBi) 
OX=290434 GN=uvrB PE=3 SV=1
Length=664

 Score = 35.8 bits (81),  Expect = 1.6, Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 7/80 (9%)

Query  400  AQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV---  454
             + L+  G  ++  H  +   ++ EVI   +   ++++V  ++  EGLDIP  ++V    
Sbjct  461  TEYLVSLGVRAKYLHSELDTLERVEVISLLRKSEIDVIVGINLLREGLDIPEVSLVAILD  520

Query  455  --RYGLLTNEISMVQARGRA  472
              + G L +  S++Q  GRA
Sbjct  521  ADKVGFLRSTTSLIQTIGRA  540


>sp|A2QFL3|DBP3_ASPNC ATP-dependent RNA helicase dbp3 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=dbp3 PE=3 SV=1
Length=495

 Score = 35.8 bits (81),  Expect = 1.6, Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 3/64 (5%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL-LTNE--ISMVQARGR  471
            + Q+++ + ++ F+ G   +LVAT VA  GLDIP   +V+     LT E  +  +   GR
Sbjct  364  LGQQERFKSLESFKKGVSTVLVATDVAARGLDIPSVKLVINVTFPLTVEDYVHRIGRTGR  423

Query  472  ARAD  475
            A A+
Sbjct  424  AGAE  427


>sp|B0RES6|UVRB_CLASE UvrABC system protein B OS=Clavibacter sepedonicus 
OX=31964 GN=uvrB PE=3 SV=1
Length=688

 Score = 35.8 bits (81),  Expect = 1.6, Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 40/73 (55%), Gaps = 9/73 (12%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRARADQ  476
            E++ + + G  ++LV  ++  EGLD+P  ++V      + G L +  S++Q  GRA  + 
Sbjct  490  ELLSELRAGVYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSTSLIQTIGRAARNV  549

Query  477  S----VYAFVATE  485
            S    +YA V T+
Sbjct  550  SGEVHMYADVLTD  562


>sp|Q6CDV4|IF4A_YARLI ATP-dependent RNA helicase eIF4A OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=TIF1 
PE=3 SV=1
Length=395

 Score = 35.4 bits (80),  Expect = 1.6, Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 18/102 (18%)

Query  362  FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH-MTQRDQ  420
            + + N  + +IF  TR+                 VD   Q L  A  +  S H  T++ Q
Sbjct  256  YETINVSQAVIFCNTRRK----------------VDYLTQALTEADFTVSSMHGETEQSQ  299

Query  421  QEVIQK-FQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN  461
            ++VI K F+ G+  +L+ T +   G+D+   ++V+ + L +N
Sbjct  300  RDVIMKAFRTGSSRILITTDLLARGIDVQQVSLVINFDLPSN  341


>sp|A5D7C1|DDX52_BOVIN Probable ATP-dependent RNA helicase DDX52 
OS=Bos taurus OX=9913 GN=DDX52 PE=2 SV=1
Length=596

 Score = 35.8 bits (81),  Expect = 1.6, Method: Compositional matrix adjust.
 Identities = 22/83 (27%), Positives = 39/83 (47%), Gaps = 2/83 (2%)

Query  416  TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA  474
            TQ+ +   +  F+ G + +L+ T++   G+D    N+V+ Y   T+ +  +   GR  RA
Sbjct  445  TQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRA  504

Query  475  DQSVYAFV-ATEGSRELKRELIN  496
                 A    TE  + L R + N
Sbjct  505  GHKGKAVTFFTEDDKPLLRSVAN  527


 Score = 33.9 bits (76),  Expect = 5.2, Method: Compositional matrix adjust.
 Identities = 33/142 (23%), Positives = 61/142 (43%), Gaps = 16/142 (11%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLE--TVDGAKVVVLVNRVHLVTQHG  64
            Q + I   L G+ ++   PTG+GKT A +     HL+  T  G + +++     L +Q  
Sbjct  190  QMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMHLKQPTNKGFRALIISPTRELASQIH  249

Query  65   EEFRRMLDGRW-------TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE  117
             E  ++ +G              +   GP++     ++  D+L+ T   L   L   ++ 
Sbjct  250  RELVKLSEGTGFRIHMIHKAAVAAKKFGPKS-----SKKFDILVTTPNRLIYLLK--QDP  302

Query  118  EHVELTVFSLIVVDECHHTHKD  139
              ++LT    +VVDE     +D
Sbjct  303  PGIDLTSVEWLVVDESDKLFED  324


>sp|Q8JFP1|IF4A2_CHICK Eukaryotic initiation factor 4A-II OS=Gallus 
gallus OX=9031 GN=EIF4A2 PE=2 SV=1
Length=407

 Score = 35.4 bits (80),  Expect = 1.6, Method: Compositional matrix adjust.
 Identities = 22/93 (24%), Positives = 45/93 (48%), Gaps = 14/93 (15%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            + +IF  TR+       WL ++  +   D     L G         M Q+++  ++++F+
Sbjct  275  QAVIFLNTRRKVD----WLTEK--MHARDFTVSALHG--------DMDQKERDVIMREFR  320

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN  461
             G+  +L+ T +   G+D+   ++V+ Y L TN
Sbjct  321  SGSSRVLITTDLLARGIDVQQVSLVINYDLPTN  353


>sp|A1C5V3|DBP3_ASPCL ATP-dependent RNA helicase dbp3 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=dbp3 PE=3 SV=1
Length=503

 Score = 35.8 bits (81),  Expect = 1.6, Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 4/75 (5%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL-LTNE--ISMVQARGR  471
            + Q ++ + +  F+ G   +LVAT VA  GLDIP   +V+     LT E  +  +   GR
Sbjct  372  LNQHERFKSLDAFKSGAATVLVATDVAARGLDIPSVKLVINVTFPLTVEDYVHRIGRTGR  431

Query  472  ARAD-QSVYAFVATE  485
            A A+ +++  F  T+
Sbjct  432  AGAEGRAITLFTETD  446


>sp|Q07886|DDX49_DROME Probable ATP-dependent RNA helicase Dbp45A 
OS=Drosophila melanogaster OX=7227 GN=Dbp45A PE=2 SV=2
Length=521

 Score = 35.8 bits (81),  Expect = 1.6, Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 37/73 (51%), Gaps = 6/73 (8%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR  473
            M Q+++   + +F+   +  L+AT VA  GLDIP   +V+ + L       +   GR AR
Sbjct  285  MRQKERVAALSRFKSNQIRTLIATDVAARGLDIPSVELVMNHMLPRTPKEYIHRVGRTAR  344

Query  474  ADQ-----SVYAF  481
            A +     S++ F
Sbjct  345  AGRKGMSISIFRF  357


>sp|A7TK55|IF4A_VANPO ATP-dependent RNA helicase eIF4A OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 
21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=TIF1 PE=3 SV=1
Length=396

 Score = 35.4 bits (80),  Expect = 1.6, Method: Compositional matrix adjust.
 Identities = 14/54 (26%), Positives = 35/54 (65%), Gaps = 0/54 (0%)

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE  462
            SS  + + Q+++  ++++F+ G+  +L++T +   G+D+   ++V+ Y L TN+
Sbjct  289  SSIYSDLPQQERDVIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPTNK  342


>sp|O75643|U520_HUMAN U5 small nuclear ribonucleoprotein 200 kDa 
helicase OS=Homo sapiens OX=9606 GN=SNRNP200 PE=1 SV=2
Length=2136

 Score = 35.8 bits (81),  Expect = 1.6, Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 61/148 (41%), Gaps = 16/148 (11%)

Query  3    LRSYQWEVIMPALE-GKNIIIWLPTGAGKTRAAAYVAKRHLE---------TVDGAKVVV  52
            L   Q ++   ALE  +N+++  PTGAGKT  A     R +           VD  K++ 
Sbjct  481  LNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIY  540

Query  53   LVNRVHLVTQHGEEF-RRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMAL  111
            +     LV +    F +R+     TV  L+GD               +++CT E   +  
Sbjct  541  IAPMRSLVQEMVGSFGKRLATYGITVAELTGD---HQLCKEEISATQIIVCTPEKWDIIT  597

Query  112  TSPEEEEHVELTVFSLIVVDECHHTHKD  139
                E  + +L    LI++DE H  H D
Sbjct  598  RKGGERTYTQLV--RLIILDEIHLLHDD  623


>sp|Q4R4Y9|IF4A2_MACFA Eukaryotic initiation factor 4A-II OS=Macaca 
fascicularis OX=9541 GN=EIF4A2 PE=2 SV=1
Length=408

 Score = 35.4 bits (80),  Expect = 1.6, Method: Compositional matrix adjust.
 Identities = 22/93 (24%), Positives = 45/93 (48%), Gaps = 14/93 (15%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            + +IF  TR+       WL ++  +   D     L G         M Q+++  ++++F+
Sbjct  276  QAVIFLNTRRKVD----WLTEK--MHARDFTVSALHG--------DMDQKERDVIMREFR  321

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN  461
             G+  +L+ T +   G+D+   ++V+ Y L TN
Sbjct  322  SGSSRVLITTDLLARGIDVQQVSLVINYDLPTN  354


>sp|Q5A9Z6|FAL1_CANAL ATP-dependent RNA helicase FAL1 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=FAL1 
PE=3 SV=1
Length=399

 Score = 35.4 bits (80),  Expect = 1.6, Method: Compositional matrix adjust.
 Identities = 15/58 (26%), Positives = 33/58 (57%), Gaps = 0/58 (0%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA  472
            M Q ++  ++  F+ G   +L++T V   G+D+   ++V+ Y L T++ + +   GR+
Sbjct  299  MKQDERDSIMNDFRRGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENYIHRIGRS  356


>sp|Q1MTR1|IRC3_SCHPO Putative mitochondrial ATP-dependent helicase 
irc3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) 
OX=284812 GN=irc3 PE=3 SV=2
Length=606

 Score = 35.8 bits (81),  Expect = 1.6, Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 93/210 (44%), Gaps = 33/210 (16%)

Query  1    MELRSYQWEVIMPAL----EGKN-IIIWLPTGAGKTRAAAYVAKRHLETV--DGAKVVVL  53
            ++LR YQ E +   L    EGK  I + L TG+GKT    +  K +  T+  +  + ++L
Sbjct  25   LKLRPYQEECLSACLNAFDEGKRRIAVSLATGSGKTALFPHFIK-YAPTLRPNSEQCLIL  83

Query  54   VNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTS  113
            V+R  L  Q  +  R  L  +    ++  DMG +   G            A++   ++ S
Sbjct  84   VHRKELALQALKHCRESLPNK----SIEIDMGNQCASG-----------LADVTVASVFS  128

Query  114  PEEEEHVELTV--FSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS--  169
             + E  ++     F L++ DE HH    +   ++  ++   + ++++    V+GLTA+  
Sbjct  129  LKNERLLKYNPLNFKLLIFDEVHHMASPSYLRIL--EHFGAESEKSK--VNVIGLTATLF  184

Query  170  --PGTGGASKLDGAINHVLQLCANLDTWCI  197
               G G A  LD  + H   +    D W +
Sbjct  185  RADGKGLACGLDEIVYHRHFVDMIKDNWLV  214


>sp|Q5RKI1|IF4A2_RAT Eukaryotic initiation factor 4A-II OS=Rattus 
norvegicus OX=10116 GN=Eif4a2 PE=1 SV=1
Length=407

 Score = 35.4 bits (80),  Expect = 1.7, Method: Compositional matrix adjust.
 Identities = 22/93 (24%), Positives = 45/93 (48%), Gaps = 14/93 (15%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            + +IF  TR+       WL ++  +   D     L G         M Q+++  ++++F+
Sbjct  275  QAVIFLNTRRKVD----WLTEK--MHARDFTVSALHG--------DMDQKERDVIMREFR  320

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN  461
             G+  +L+ T +   G+D+   ++V+ Y L TN
Sbjct  321  SGSSRVLITTDLLARGIDVQQVSLVINYDLPTN  353


>sp|Q5R4X1|IF4A2_PONAB Eukaryotic initiation factor 4A-II OS=Pongo 
abelii OX=9601 GN=EIF4A2 PE=2 SV=1
Length=407

 Score = 35.4 bits (80),  Expect = 1.7, Method: Compositional matrix adjust.
 Identities = 22/93 (24%), Positives = 45/93 (48%), Gaps = 14/93 (15%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            + +IF  TR+       WL ++  +   D     L G         M Q+++  ++++F+
Sbjct  275  QAVIFLNTRRKVD----WLTEK--MHARDFTVSALHG--------DMDQKERDVIMREFR  320

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN  461
             G+  +L+ T +   G+D+   ++V+ Y L TN
Sbjct  321  SGSSRVLITTDLLARGIDVQQVSLVINYDLPTN  353


>sp|P10630|IF4A2_MOUSE Eukaryotic initiation factor 4A-II OS=Mus 
musculus OX=10090 GN=Eif4a2 PE=1 SV=2
Length=407

 Score = 35.4 bits (80),  Expect = 1.7, Method: Compositional matrix adjust.
 Identities = 22/93 (24%), Positives = 45/93 (48%), Gaps = 14/93 (15%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            + +IF  TR+       WL ++  +   D     L G         M Q+++  ++++F+
Sbjct  275  QAVIFLNTRRKVD----WLTEK--MHARDFTVSALHG--------DMDQKERDVIMREFR  320

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN  461
             G+  +L+ T +   G+D+   ++V+ Y L TN
Sbjct  321  SGSSRVLITTDLLARGIDVQQVSLVINYDLPTN  353


>sp|Q14240|IF4A2_HUMAN Eukaryotic initiation factor 4A-II OS=Homo 
sapiens OX=9606 GN=EIF4A2 PE=1 SV=2
Length=407

 Score = 35.4 bits (80),  Expect = 1.7, Method: Compositional matrix adjust.
 Identities = 22/93 (24%), Positives = 45/93 (48%), Gaps = 14/93 (15%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            + +IF  TR+       WL ++  +   D     L G         M Q+++  ++++F+
Sbjct  275  QAVIFLNTRRKVD----WLTEK--MHARDFTVSALHG--------DMDQKERDVIMREFR  320

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN  461
             G+  +L+ T +   G+D+   ++V+ Y L TN
Sbjct  321  SGSSRVLITTDLLARGIDVQQVSLVINYDLPTN  353


>sp|Q3SZ65|IF4A2_BOVIN Eukaryotic initiation factor 4A-II OS=Bos 
taurus OX=9913 GN=EIF4A2 PE=2 SV=1
Length=407

 Score = 35.4 bits (80),  Expect = 1.7, Method: Compositional matrix adjust.
 Identities = 22/93 (24%), Positives = 45/93 (48%), Gaps = 14/93 (15%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            + +IF  TR+       WL ++  +   D     L G         M Q+++  ++++F+
Sbjct  275  QAVIFLNTRRKVD----WLTEK--MHARDFTVSALHG--------DMDQKERDVIMREFR  320

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN  461
             G+  +L+ T +   G+D+   ++V+ Y L TN
Sbjct  321  SGSSRVLITTDLLARGIDVQQVSLVINYDLPTN  353


>sp|Q6FKN8|DBP5_CANGA ATP-dependent RNA helicase DBP5 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DBP5 PE=3 SV=1
Length=504

 Score = 35.4 bits (80),  Expect = 1.7, Method: Compositional matrix adjust.
 Identities = 17/44 (39%), Positives = 28/44 (64%), Gaps = 2/44 (5%)

Query  417  QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT  460
            +RD+  +I  F++G   +L+ T+V   G+DIP  ++VV Y L T
Sbjct  390  ERDR--LIDDFREGRSKVLITTNVLARGIDIPSVSMVVNYDLPT  431


>sp|A1AZF8|SYGB_PARDP Glycine--tRNA ligase beta subunit OS=Paracoccus 
denitrificans (strain Pd 1222) OX=318586 GN=glyS PE=3 
SV=1
Length=685

 Score = 35.8 bits (81),  Expect = 1.7, Method: Compositional matrix adjust.
 Identities = 31/130 (24%), Positives = 56/130 (43%), Gaps = 14/130 (11%)

Query  304  AALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFS  363
            AAL+ F     +T+ Q        L   DD+K ++       P  P  E++ ++L+R   
Sbjct  80   AALEGFLRSTGLTREQ--------LEARDDKKGQVWFAVVTKPGRPAAEIVAEVLERAIR  131

Query  364  SSNSPRGIIFT----RTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRD  419
                P+ + +     R  +  HS++  L  + G   V +  +  IGAGN+++       D
Sbjct  132  DFPWPKSMRWGSGSLRWVRPLHSIICLLSDESGASVVPLEIE-GIGAGNTTRGHRFMAPD  190

Query  420  QQEVIQKFQD  429
            +  V   F+D
Sbjct  191  EIAV-SGFED  199


>sp|Q4PDT1|DBP3_USTMA ATP-dependent RNA helicase DBP3 OS=Ustilago 
maydis (strain 521 / FGSC 9021) OX=237631 GN=DBP3 PE=3 SV=1
Length=585

 Score = 35.4 bits (80),  Expect = 1.7, Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 25/42 (60%), Gaps = 0/42 (0%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY  456
            + Q ++   +++F+     LLVAT VA  GLDIP+   VV Y
Sbjct  454  LGQNERIASLERFKSAETPLLVATDVAARGLDIPNVEHVVNY  495


>sp|A7TJM9|DRS1_VANPO ATP-dependent RNA helicase DRS1 OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=DRS1 PE=3 SV=1
Length=752

 Score = 35.8 bits (81),  Expect = 1.7, Method: Compositional matrix adjust.
 Identities = 33/150 (22%), Positives = 65/150 (43%), Gaps = 16/150 (11%)

Query  358  LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ  417
            L R+   +   R ++F   ++ AH L + L               L+G         +TQ
Sbjct  470  LIRKLDGTGQKRIVVFVARKEMAHKLRIILG--------------LLGMKVGELHGSLTQ  515

Query  418  RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN-EISMVQARGRARADQ  476
              + + +  F+   + +L+ T +A  GLDIP   VV+ + +  + EI + +    ARA +
Sbjct  516  EQRLQSVNNFKSLEVPVLICTDLASRGLDIPKIEVVINFDMPKSYEIYLHRVGRTARAGR  575

Query  477  SVYAFVATEGSRELKRELINEALETLMEQA  506
               + V   G     R ++  A++++ E +
Sbjct  576  EGRS-VTFVGESSQDRSIVRSAIKSVEESS  604


>sp|Q7XJN0|RH17_ARATH DEAD-box ATP-dependent RNA helicase 17 OS=Arabidopsis 
thaliana OX=3702 GN=RH17 PE=2 SV=1
Length=609

 Score = 35.4 bits (80),  Expect = 1.8, Method: Compositional matrix adjust.
 Identities = 31/136 (23%), Positives = 57/136 (42%), Gaps = 16/136 (12%)

Query  346  PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSA---HSLLLWLQ-------QQQGLQT  395
            P   +L  L  +L+  F    S + ++F  TR +    +SLL   Q       +++G + 
Sbjct  310  PCGARLVALLSVLKNLFEREASQKVVVFFSTRDAVDFHYSLLSEFQWPPNSETEEEGTKE  369

Query  396  VDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVR  455
            + ++ +     G+      M Q D++     F+     +L++T VA  GLD P    +++
Sbjct  370  LFLKCKTFRLHGS------MEQEDRRSAFGTFKTEKQAVLLSTDVAARGLDFPKVRCIIQ  423

Query  456  YGLLTNEISMVQARGR  471
            Y         V   GR
Sbjct  424  YDCPGEATEYVHRVGR  439


>sp|Q0SM15|UVRB_BORAP UvrABC system protein B OS=Borreliella afzelii 
(strain PKo) OX=390236 GN=uvrB PE=3 SV=1
Length=664

 Score = 35.4 bits (80),  Expect = 1.8, Method: Compositional matrix adjust.
 Identities = 27/109 (25%), Positives = 53/109 (49%), Gaps = 19/109 (17%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            R +I T T++ +  L  +L       T+ ++A+ L         + +   ++ EVI   +
Sbjct  446  RVLITTLTKKMSEDLTEYLV------TLGVKAKYL--------HSELDTLERVEVISLLR  491

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
               ++++V  ++  EGLDIP  ++V      + G L +  S++Q  GRA
Sbjct  492  KSEIDVIVGINLLREGLDIPEVSLVAILDADKVGFLRSATSLIQTIGRA  540


>sp|P15043|RECQ_ECOLI ATP-dependent DNA helicase RecQ OS=Escherichia 
coli (strain K12) OX=83333 GN=recQ PE=1 SV=5
Length=609

 Score = 35.4 bits (80),  Expect = 1.8, Method: Compositional matrix adjust.
 Identities = 37/155 (24%), Positives = 59/155 (38%), Gaps = 23/155 (15%)

Query  326  RLLALFDDRKNELAHLATHGPENPKLEMLEKI-----LQRQFSSSNSPRGIIFTRTRQSA  380
            RLL L D     L  +++    N +  ++EK      L R         GII+  +R   
Sbjct  194  RLLGLND----PLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKV  249

Query  381  HSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSV  440
                  LQ +              G   ++    +    + +V +KFQ   L ++VAT  
Sbjct  250  EDTAARLQSK--------------GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVA  295

Query  441  AEEGLDIPHCNVVVRYGLLTNEISMVQARGRARAD  475
               G++ P+   VV + +  N  S  Q  GRA  D
Sbjct  296  FGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRD  330


>sp|B2SUN1|UVRB_XANOP UvrABC system protein B OS=Xanthomonas oryzae 
pv. oryzae (strain PXO99A) OX=360094 GN=uvrB PE=3 SV=1
Length=673

 Score = 35.4 bits (80),  Expect = 1.9, Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +  S++Q  GRA
Sbjct  487  EIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRA  542


>sp|Q2P0Z3|UVRB_XANOM UvrABC system protein B OS=Xanthomonas oryzae 
pv. oryzae (strain MAFF 311018) OX=342109 GN=uvrB PE=3 
SV=1
Length=673

 Score = 35.4 bits (80),  Expect = 1.9, Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +  S++Q  GRA
Sbjct  487  EIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRA  542


>sp|Q12099|FAL1_YEAST ATP-dependent RNA helicase FAL1 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=FAL1 
PE=1 SV=1
Length=399

 Score = 35.4 bits (80),  Expect = 1.9, Method: Compositional matrix adjust.
 Identities = 24/83 (29%), Positives = 43/83 (52%), Gaps = 5/83 (6%)

Query  394  QTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN  451
            + VD  +Q LI +  +  S H  M Q ++ +V+  F+ G   +L++T V   G+D+   +
Sbjct  276  KKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVS  335

Query  452  VVVRYGL---LTNEISMVQARGR  471
            +V+ Y L   + N I  +   GR
Sbjct  336  LVINYDLPEIIENYIHRIGRSGR  358


>sp|A6ZXY5|FAL1_YEAS7 ATP-dependent RNA helicase FAL1 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=FAL1 PE=3 SV=1
Length=399

 Score = 35.4 bits (80),  Expect = 1.9, Method: Compositional matrix adjust.
 Identities = 24/83 (29%), Positives = 43/83 (52%), Gaps = 5/83 (6%)

Query  394  QTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN  451
            + VD  +Q LI +  +  S H  M Q ++ +V+  F+ G   +L++T V   G+D+   +
Sbjct  276  KKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVS  335

Query  452  VVVRYGL---LTNEISMVQARGR  471
            +V+ Y L   + N I  +   GR
Sbjct  336  LVINYDLPEIIENYIHRIGRSGR  358


>sp|B0RRD9|UVRB_XANCB UvrABC system protein B OS=Xanthomonas campestris 
pv. campestris (strain B100) OX=509169 GN=uvrB PE=3 
SV=1
Length=673

 Score = 35.4 bits (80),  Expect = 1.9, Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +  S++Q  GRA
Sbjct  487  EIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRA  542


>sp|A0AKW5|DCUP_LISW6 Uroporphyrinogen decarboxylase OS=Listeria 
welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / CCUG 
15529 / CIP 8149 / NCTC 11857 / SLCC 5334 / V8) OX=386043 
GN=hemE PE=3 SV=1
Length=350

 Score = 35.0 bits (79),  Expect = 1.9, Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 4/61 (7%)

Query  190  ANLDTWCIMSPQNCCPQ----LQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLE  245
             NLD   +++P+ C  +    +QE   +P   +NL H    +   ++LKKL + IHD  E
Sbjct  285  GNLDPSTLLAPEKCLEEAERIIQEGILKPGYIFNLGHGVFPEVQPEMLKKLTNYIHDRSE  344

Query  246  M  246
            +
Sbjct  345  I  345


>sp|Q890X8|UVRB_CLOTE UvrABC system protein B OS=Clostridium tetani 
(strain Massachusetts / E88) OX=212717 GN=uvrB PE=3 SV=1
Length=661

 Score = 35.4 bits (80),  Expect = 1.9, Method: Compositional matrix adjust.
 Identities = 26/112 (23%), Positives = 56/112 (50%), Gaps = 19/112 (17%)

Query  366  NSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQ  425
            N  R ++ T T++ A  L  + ++      ++I+ + L         + +   ++ ++I+
Sbjct  443  NGFRVLVTTLTKKMAEDLTEYFKE------MNIKTRYL--------HSDIDTIERMKIIR  488

Query  426  KFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            + + G  ++LV  ++  EGLDIP   +V      + G L ++ S++Q  GRA
Sbjct  489  ELRLGEFDVLVGINLLREGLDIPEVALVAILDADKEGFLRSDRSLIQIIGRA  540


>sp|Q3IKF4|UVRB_PSET1 UvrABC system protein B OS=Pseudoalteromonas 
translucida (strain TAC 125) OX=326442 GN=uvrB PE=3 SV=1
Length=664

 Score = 35.4 bits (80),  Expect = 1.9, Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + G  ++LV  ++  EGLD+P   +V      + G L +  S++Q  GRA
Sbjct  487  EIIRDLRAGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSARSIIQTVGRA  542


>sp|Q4R6M5|DDX5_MACFA Probable ATP-dependent RNA helicase DDX5 
OS=Macaca fascicularis OX=9541 GN=DDX5 PE=2 SV=1
Length=614

 Score = 35.4 bits (80),  Expect = 1.9, Method: Compositional matrix adjust.
 Identities = 19/68 (28%), Positives = 36/68 (53%), Gaps = 1/68 (1%)

Query  416  TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA  474
            +Q+++  V+ +F+ G   +L+AT VA  GLD+     V+ Y    +    +   GR AR+
Sbjct  376  SQQERGWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARS  435

Query  475  DQSVYAFV  482
             ++  A+ 
Sbjct  436  TKTGTAYT  443


>sp|Q5GXX4|UVRB_XANOR UvrABC system protein B OS=Xanthomonas oryzae 
pv. oryzae (strain KACC10331 / KXO85) OX=291331 GN=uvrB 
PE=3 SV=1
Length=688

 Score = 35.4 bits (80),  Expect = 1.9, Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +  S++Q  GRA
Sbjct  502  EIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRA  557


>sp|Q0CMM8|DBP10_ASPTN ATP-dependent RNA helicase dbp10 OS=Aspergillus 
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=dbp10 
PE=3 SV=1
Length=928

 Score = 35.4 bits (80),  Expect = 1.9, Method: Compositional matrix adjust.
 Identities = 20/59 (34%), Positives = 30/59 (51%), Gaps = 1/59 (2%)

Query  424  IQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF  481
            +  F+ G  N+LV T VA  G+DIP    V+ Y   +     V   GR ARA +  +++
Sbjct  417  VNNFRTGLSNILVVTDVAARGIDIPILANVINYDFPSQPKIFVHRVGRTARAGRKGWSY  475


>sp|Q8P7X1|UVRB_XANCP UvrABC system protein B OS=Xanthomonas campestris 
pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 
528 / LMG 568 / P 25) OX=190485 GN=uvrB PE=3 SV=1
Length=673

 Score = 35.4 bits (80),  Expect = 1.9, Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +  S++Q  GRA
Sbjct  487  EIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRA  542


>sp|Q4UW79|UVRB_XANC8 UvrABC system protein B OS=Xanthomonas campestris 
pv. campestris (strain 8004) OX=314565 GN=uvrB PE=3 
SV=1
Length=673

 Score = 35.4 bits (80),  Expect = 1.9, Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +  S++Q  GRA
Sbjct  487  EIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRA  542


>sp|Q4IPI1|ROK1_GIBZE ATP-dependent RNA helicase ROK1 OS=Gibberella 
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / 
NRRL 31084 / PH-1) OX=229533 GN=ROK1 PE=3 SV=1
Length=693

 Score = 35.4 bits (80),  Expect = 1.9, Method: Compositional matrix adjust.
 Identities = 39/152 (26%), Positives = 65/152 (43%), Gaps = 12/152 (8%)

Query  325  RRLLALFDDRKNELAH-LATHGPENPKLEMLEKILQRQFSSSNSPR----GIIFTRTRQS  379
            R ++ L D     +AH L     E  KL  L ++L    S  + P      ++FT+T   
Sbjct  425  RLVVGLKDTAVPNIAHKLIYTASEQGKLLALRQLLHPTASDDSGPPLRPPFLVFTQTIDR  484

Query  380  AHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATS  439
            A +L   LQ        DI  +    A  ++  + +T   +  +++KF+ G + +L+ T 
Sbjct  485  ATALHEELQ-------YDIPLEAGGAARIAALHSGLTDSARSSIMRKFRAGDIWILITTD  537

Query  440  VAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
            V   G+D    N VV Y +  +    V   GR
Sbjct  538  VLARGVDFAGVNGVVNYDVPGSSAGYVHRAGR  569


>sp|P0C2N7|DRS1_CHAGB ATP-dependent RNA helicase DRS1 OS=Chaetomium 
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 
6347 / NRRL 1970) OX=306901 GN=DRS1 PE=3 SV=1
Length=795

 Score = 35.4 bits (80),  Expect = 2.0, Method: Compositional matrix adjust.
 Identities = 25/66 (38%), Positives = 36/66 (55%), Gaps = 2/66 (3%)

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VAT  484
            F+DG +N L+AT +A  GLDI   + V+ Y    +    V   GR ARA +S  A  +A 
Sbjct  561  FRDGKVNYLLATDLASRGLDIKGIDTVINYEAPQSLEIYVHRVGRTARAGRSGVAITLAA  620

Query  485  EGSREL  490
            E  R++
Sbjct  621  EPDRKV  626


>sp|Q8PJB1|UVRB_XANAC UvrABC system protein B OS=Xanthomonas axonopodis 
pv. citri (strain 306) OX=190486 GN=uvrB PE=3 SV=1
Length=673

 Score = 35.4 bits (80),  Expect = 2.0, Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+I+  + G  ++LV  ++  EGLD+P  ++V      + G L +  S++Q  GRA
Sbjct  487  EIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRA  542


>sp|A5E1N2|ROK1_LODEL ATP-dependent RNA helicase ROK1 OS=Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=ROK1 PE=3 SV=1
Length=553

 Score = 35.4 bits (80),  Expect = 2.0, Method: Compositional matrix adjust.
 Identities = 14/43 (33%), Positives = 27/43 (63%), Gaps = 0/43 (0%)

Query  416  TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL  458
            T + + EVI++F++G + +L+ T V   G+D    N+V+ Y +
Sbjct  401  TPKQRDEVIKRFKNGDIWVLITTDVLARGVDFKGVNMVINYDV  443


>sp|P20449|DBP5_YEAST ATP-dependent RNA helicase DBP5 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DBP5 
PE=1 SV=2
Length=482

 Score = 35.4 bits (80),  Expect = 2.0, Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 14/91 (15%)

Query  370  GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD  429
             IIF  T+++A+ L   L+ +              G   S     +  +++  +I  F++
Sbjct  333  SIIFVATKKTANVLYGKLKSE--------------GHEVSILHGDLQTQERDRLIDDFRE  378

Query  430  GTLNLLVATSVAEEGLDIPHCNVVVRYGLLT  460
            G   +L+ T+V   G+DIP  ++VV Y L T
Sbjct  379  GRSKVLITTNVLARGIDIPTVSMVVNYDLPT  409


>sp|A6ZNQ1|DBP5_YEAS7 ATP-dependent RNA helicase DBP5 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=DBP5 PE=3 SV=1
Length=482

 Score = 35.4 bits (80),  Expect = 2.0, Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 14/91 (15%)

Query  370  GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD  429
             IIF  T+++A+ L   L+ +              G   S     +  +++  +I  F++
Sbjct  333  SIIFVATKKTANVLYGKLKSE--------------GHEVSILHGDLQTQERDRLIDDFRE  378

Query  430  GTLNLLVATSVAEEGLDIPHCNVVVRYGLLT  460
            G   +L+ T+V   G+DIP  ++VV Y L T
Sbjct  379  GRSKVLITTNVLARGIDIPTVSMVVNYDLPT  409


>sp|Q9PJF4|UVRB_CHLMU UvrABC system protein B OS=Chlamydia muridarum 
(strain MoPn / Nigg) OX=243161 GN=uvrB PE=3 SV=1
Length=676

 Score = 35.4 bits (80),  Expect = 2.0, Method: Compositional matrix adjust.
 Identities = 21/78 (27%), Positives = 40/78 (51%), Gaps = 7/78 (9%)

Query  400  AQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----  454
            A+L I A          +R Q  ++   + GT+++L+  ++  EG+D+P  ++V      
Sbjct  478  AELGIAAAYLHSGIETAERTQ--ILTDLRLGTIDVLIGVNLLREGIDLPEVSLVAILDAD  535

Query  455  RYGLLTNEISMVQARGRA  472
            + G L +  S++Q  GRA
Sbjct  536  KEGFLRSSASLIQFCGRA  553


>sp|Q8K301|DDX52_MOUSE Probable ATP-dependent RNA helicase DDX52 
OS=Mus musculus OX=10090 GN=Ddx52 PE=2 SV=2
Length=598

 Score = 35.4 bits (80),  Expect = 2.1, Method: Compositional matrix adjust.
 Identities = 22/83 (27%), Positives = 39/83 (47%), Gaps = 2/83 (2%)

Query  416  TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA  474
            TQ+ +   +  F+ G + +L+ T++   G+D    N+V+ Y   T+ +  +   GR  RA
Sbjct  448  TQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRA  507

Query  475  DQSVYAFV-ATEGSRELKRELIN  496
                 A    TE  + L R + N
Sbjct  508  GNRGKAVTFFTEDDKPLLRSVAN  530


>sp|Q8RXK6|RH8_ARATH DEAD-box ATP-dependent RNA helicase 8 OS=Arabidopsis 
thaliana OX=3702 GN=RH8 PE=2 SV=1
Length=505

 Score = 35.4 bits (80),  Expect = 2.1, Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 11/111 (10%)

Query  373  FTRTRQSAH---SLLLWLQQQQGL------QTVDIRAQLLIGAGNSSQSTH--MTQRDQQ  421
            F   RQ  H   +L   LQ  Q +        V++ A+ +   G S    H  M Q  + 
Sbjct  349  FVEERQKIHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRN  408

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA  472
             V   F++G    LV T +   G+DI   NVV+ +    N  + +   GR+
Sbjct  409  RVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRS  459


>sp|A5DS77|DBP2_LODEL ATP-dependent RNA helicase DBP2 OS=Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=DBP2 PE=3 SV=1
Length=552

 Score = 35.4 bits (80),  Expect = 2.1, Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 55/115 (48%), Gaps = 15/115 (13%)

Query  347  ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA  406
            E  K ++L K L+   + SNS + ++F  T+++   +  +L+   G   + I        
Sbjct  344  EYQKRDLLVKHLESALADSNS-KVLVFASTKRTCDEVTSYLRAD-GWPALAIHGD-----  396

Query  407  GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN  461
                      Q ++  V+++F+ G+ +++VAT VA  G+D+     VV Y +  N
Sbjct  397  --------KEQHERDWVLKEFRQGSHSIMVATDVAARGIDVKGITHVVNYDMPGN  443


>sp|Q9FT69|RQSIM_ARATH ATP-dependent DNA helicase Q-like SIM OS=Arabidopsis 
thaliana OX=3702 GN=RECQSIM PE=2 SV=1
Length=858

 Score = 35.4 bits (80),  Expect = 2.2, Method: Compositional matrix adjust.
 Identities = 24/84 (29%), Positives = 44/84 (52%), Gaps = 3/84 (4%)

Query  394  QTVDIRAQLLIGAG--NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN  451
            ++V+I A+ L G G   ++ +  + ++  ++V Q F D  L ++VAT     G+D  +  
Sbjct  509  ESVNI-AKYLCGVGLKAAAYNASLPKKHLRQVHQDFHDNKLQVVVATIAFGMGIDKKNVR  567

Query  452  VVVRYGLLTNEISMVQARGRARAD  475
             ++ YG L +  +  Q  GRA  D
Sbjct  568  KIIHYGWLQSLEAYYQEAGRAGRD  591


>sp|Q7S9J4|DBP10_NEUCR ATP-dependent RNA helicase dbp-10 OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 
/ DSM 1257 / FGSC 987) OX=367110 GN=dbp-10 PE=3 SV=1
Length=934

 Score = 35.4 bits (80),  Expect = 2.2, Method: Compositional matrix adjust.
 Identities = 20/59 (34%), Positives = 30/59 (51%), Gaps = 1/59 (2%)

Query  424  IQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF  481
            +  F+ G  ++LV T VA  G+D+P    V+ Y   +     V   GR ARA Q  +A+
Sbjct  417  VDNFRRGRTHILVVTDVAARGIDMPALANVINYDFPSQPKIFVHRVGRTARAGQRGWAY  475


>sp|Q9U2G0|U520_CAEEL U5 small nuclear ribonucleoprotein 200 kDa 
helicase OS=Caenorhabditis elegans OX=6239 GN=snrp-200 PE=3 
SV=1
Length=2145

 Score = 35.4 bits (80),  Expect = 2.2, Method: Compositional matrix adjust.
 Identities = 20/69 (29%), Positives = 34/69 (49%), Gaps = 2/69 (3%)

Query  17    GKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRW-  75
              +N+I+  P G+GKT  A     RH E    AK V +     + T+   +++R L+    
Sbjct  1337  NENVIVCAPNGSGKTAIAELAVLRHFENTPEAKAVYITPMEDMATKVYADWKRRLEPAIG  1396

Query  76    -TVTTLSGD  83
              T+  L+G+
Sbjct  1397  HTIVLLTGE  1405


>sp|Q86TM3|DDX53_HUMAN Probable ATP-dependent RNA helicase DDX53 
OS=Homo sapiens OX=9606 GN=DDX53 PE=1 SV=3
Length=631

 Score = 35.4 bits (80),  Expect = 2.2, Method: Compositional matrix adjust.
 Identities = 17/57 (30%), Positives = 28/57 (49%), Gaps = 2/57 (4%)

Query  407  GNSSQSTHMT--QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN  461
            G S++S H    Q DQ+  ++ F+ G + +L+ T +   GLD+     V  Y    N
Sbjct  491  GISAESLHGNSEQSDQERAVEDFKSGNIKILITTDIVSRGLDLNDVTHVYNYDFPRN  547


>sp|Q8KC79|UVRB_CHLTE UvrABC system protein B OS=Chlorobaculum 
tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS) 
OX=194439 GN=uvrB PE=3 SV=1
Length=684

 Score = 35.4 bits (80),  Expect = 2.2, Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 53/99 (54%), Gaps = 9/99 (9%)

Query  407  GNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLL  459
            G  SQ  H  +   ++ +++++ + G + +LV  ++  EGLD+P   +V      + G L
Sbjct  476  GLRSQYLHSEIKSLERMQILRELRAGDIEVLVGVNLLREGLDLPEVALVAILDADKEGFL  535

Query  460  TNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE  497
             +  S++Q  GR AR  + +  F A + +  + RE+++E
Sbjct  536  RDATSLMQIAGRAARNVEGLVLFYADKITDSM-REVLDE  573


>sp|Q8SRB2|DBP2_ENCCU ATP-dependent RNA helicase DBP2 OS=Encephalitozoon 
cuniculi (strain GB-M1) OX=284813 GN=DBP2 PE=3 SV=1
Length=495

 Score = 35.0 bits (79),  Expect = 2.3, Method: Compositional matrix adjust.
 Identities = 23/94 (24%), Positives = 42/94 (45%), Gaps = 3/94 (3%)

Query  405  GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY---GLLTN  461
            G G ++     +Q  + +V+  F+ G   +L+AT VA  GLD+    +V+ +   G   +
Sbjct  355  GYGAAALHGDKSQNIRDKVLDDFRSGRRPILIATEVAGRGLDVNDVKLVINFDFPGSCED  414

Query  462  EISMVQARGRARADQSVYAFVATEGSRELKRELI  495
             +  +    R    + +     T G +   RELI
Sbjct  415  YVHRIGRTARGNTKEGISHTFFTVGDKANARELI  448


>sp|Q72BN0|UVRB_NITV2 UvrABC system protein B OS=Nitratidesulfovibrio 
vulgaris (strain ATCC 29579 / DSM 644 / CCUG 34227 / 
NCIMB 8303 / VKM B-1760 / Hildenborough) OX=882 GN=uvrB PE=3 
SV=1
Length=677

 Score = 35.4 bits (80),  Expect = 2.3, Method: Compositional matrix adjust.
 Identities = 19/55 (35%), Positives = 31/55 (56%), Gaps = 5/55 (9%)

Query  423  VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            +IQ  + G  ++LV  ++  EGLDIP  ++V      + G L +  S++Q  GRA
Sbjct  489  IIQALRRGECDVLVGINLLREGLDIPEVSLVSILDADKEGFLRSTGSLIQTFGRA  543


>sp|Q6C7X8|DBP10_YARLI ATP-dependent RNA helicase DBP10 OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DBP10 
PE=3 SV=1
Length=926

 Score = 35.4 bits (80),  Expect = 2.3, Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR  473
            + Q  ++  + +F+ G  ++LV T VA  G+D+P    V+ Y L  +    +   GR AR
Sbjct  426  LDQHARKNQLYRFRTGKTSILVVTDVAARGIDVPVLANVINYSLPPSPKVFIHRVGRTAR  485

Query  474  ADQSVYAF  481
            A    +A+
Sbjct  486  AGNRGWAY  493


>sp|A1VDN0|UVRB_NITV4 UvrABC system protein B OS=Nitratidesulfovibrio 
vulgaris (strain DP4) OX=391774 GN=uvrB PE=3 SV=1
Length=677

 Score = 35.4 bits (80),  Expect = 2.3, Method: Compositional matrix adjust.
 Identities = 19/55 (35%), Positives = 31/55 (56%), Gaps = 5/55 (9%)

Query  423  VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            +IQ  + G  ++LV  ++  EGLDIP  ++V      + G L +  S++Q  GRA
Sbjct  489  IIQALRRGECDVLVGINLLREGLDIPEVSLVSILDADKEGFLRSTGSLIQTFGRA  543


>sp|Q99PT0|DDX52_RAT Probable ATP-dependent RNA helicase DDX52 
OS=Rattus norvegicus OX=10116 GN=Ddx52 PE=2 SV=1
Length=598

 Score = 35.0 bits (79),  Expect = 2.4, Method: Compositional matrix adjust.
 Identities = 22/83 (27%), Positives = 39/83 (47%), Gaps = 2/83 (2%)

Query  416  TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA  474
            TQ+ +   +  F+ G + +L+ T++   G+D    N+V+ Y   T+ +  +   GR  RA
Sbjct  448  TQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRA  507

Query  475  DQSVYAFV-ATEGSRELKRELIN  496
                 A    TE  + L R + N
Sbjct  508  GNRGKAVTFFTEDDKPLLRSVAN  530


>sp|Q83NI7|UVRB_TROW8 UvrABC system protein B OS=Tropheryma whipplei 
(strain TW08/27) OX=218496 GN=uvrB PE=3 SV=1
Length=677

 Score = 35.0 bits (79),  Expect = 2.4, Method: Compositional matrix adjust.
 Identities = 30/126 (24%), Positives = 58/126 (46%), Gaps = 22/126 (17%)

Query  352  EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ  411
            ++LE+I +R+  S    R ++ T T++ A  L  +L +               G   S  
Sbjct  437  DLLEEIRKRKLLSE---RVLVTTLTKRMAEELTDFLSEA--------------GVNVSYL  479

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMV  466
             + +    + E++   + G +++LV  ++  EGLD+P  ++V      + G L +  S +
Sbjct  480  HSDIDTLHRVELLTSLRMGRIDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSFI  539

Query  467  QARGRA  472
            Q  GRA
Sbjct  540  QTIGRA  545


>sp|P94846|UVRB_HELPY UvrABC system protein B OS=Helicobacter 
pylori (strain ATCC 700392 / 26695) OX=85962 GN=uvrB PE=3 SV=2
Length=658

 Score = 35.0 bits (79),  Expect = 2.4, Method: Compositional matrix adjust.
 Identities = 16/59 (27%), Positives = 33/59 (56%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++  +I+  +    ++L+  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  486  ERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQTMGRA  544


>sp|Q6NZQ2|DDX31_MOUSE ATP-dependent DNA helicase DDX31 OS=Mus 
musculus OX=10090 GN=Ddx31 PE=2 SV=2
Length=687

 Score = 35.0 bits (79),  Expect = 2.5, Method: Compositional matrix adjust.
 Identities = 16/58 (28%), Positives = 28/58 (48%), Gaps = 0/58 (0%)

Query  414  HMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
            +M Q ++  V  +F      +L+ T VA  GLD+P    +V+Y   ++    +   GR
Sbjct  425  NMEQEERTSVFHEFSHSETGVLLCTDVASRGLDLPQVTWIVQYSAPSSPAEYIHRIGR  482


>sp|Q71XF3|DCUP_LISMF Uroporphyrinogen decarboxylase OS=Listeria 
monocytogenes serotype 4b (strain F2365) OX=265669 GN=hemE 
PE=3 SV=1
Length=353

 Score = 35.0 bits (79),  Expect = 2.5, Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 4/61 (7%)

Query  190  ANLDTWCIMSPQNCCPQ----LQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLE  245
             NLD   +++P+ C  +    LQE   +P   +NL H    +   ++LKKL + IH+  E
Sbjct  285  GNLDPSTLLAPEKCLKEANRILQEGVLEPGYIFNLGHGVFPEVPPEMLKKLTNYIHERSE  344

Query  246  M  246
            +
Sbjct  345  I  345


>sp|Q1CSF2|UVRB_HELPH UvrABC system protein B OS=Helicobacter 
pylori (strain HPAG1) OX=357544 GN=uvrB PE=3 SV=1
Length=658

 Score = 35.0 bits (79),  Expect = 2.5, Method: Compositional matrix adjust.
 Identities = 16/59 (27%), Positives = 33/59 (56%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++  +I+  +    ++L+  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  486  ERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQTMGRA  544


>sp|O26066|MFD_HELPY Transcription-repair-coupling factor OS=Helicobacter 
pylori (strain ATCC 700392 / 26695) OX=85962 GN=mfd 
PE=3 SV=1
Length=999

 Score = 35.4 bits (80),  Expect = 2.5, Method: Compositional matrix adjust.
 Identities = 20/93 (22%), Positives = 43/93 (46%), Gaps = 10/93 (11%)

Query  413  THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQ  467
            + +   + +E++ +F  G   +L+ TS+ E G+ +P+ N ++      +GL      + Q
Sbjct  723  SQINANESEEIMLEFAKGNYQVLLCTSIVESGIHLPNANTIIIDNAQNFGL----ADLHQ  778

Query  468  ARGR-ARADQSVYAFVATEGSRELKRELINEAL  499
             RGR  R  +  + +   E  + L  + +   L
Sbjct  779  LRGRVGRGKKEGFCYFLIEDQKSLNEQALKRLL  811


>sp|C1KXG7|DCUP_LISMC Uroporphyrinogen decarboxylase OS=Listeria 
monocytogenes serotype 4b (strain CLIP80459) OX=568819 GN=hemE 
PE=3 SV=1
Length=353

 Score = 34.7 bits (78),  Expect = 2.5, Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 4/61 (7%)

Query  190  ANLDTWCIMSPQNCCPQ----LQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLE  245
             NLD   +++P+ C  +    LQE   +P   +NL H    +   ++LKKL + IH+  E
Sbjct  285  GNLDPSTLLAPEKCLKEANRILQEGVLEPGYIFNLGHGVFPEVPPEMLKKLTNYIHERSE  344

Query  246  M  246
            +
Sbjct  345  I  345


>sp|B8G8R1|UVRB_CHLAD UvrABC system protein B OS=Chloroflexus 
aggregans (strain MD-66 / DSM 9485) OX=326427 GN=uvrB PE=3 SV=1
Length=664

 Score = 35.0 bits (79),  Expect = 2.5, Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+++  + G  +++V  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  483  EILRDLRLGVYDVVVGINLLREGLDLPEVSLVAILDADKEGYLRSETSLIQIIGRA  538


>sp|C1A4H0|UVRB_GEMAT UvrABC system protein B OS=Gemmatimonas 
aurantiaca (strain DSM 14586 / JCM 11422 / NBRC 100505 / T-27) 
OX=379066 GN=uvrB PE=3 SV=1
Length=700

 Score = 35.0 bits (79),  Expect = 2.6, Method: Compositional matrix adjust.
 Identities = 17/59 (29%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E+++  + G  ++LV  ++  EGLD+P  ++V      + G L ++ S++Q  GRA
Sbjct  483  ERMEIVRGLRLGEFDVLVGINLLREGLDMPEVSLVAILDADQEGFLRSDRSLIQTIGRA  541


>sp|Q9HPZ2|RAD25_HALSA Putative DNA 3'-5' helicase Rad25 OS=Halobacterium 
salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) 
OX=64091 GN=rad25 PE=3 SV=2
Length=600

 Score = 35.0 bits (79),  Expect = 2.6, Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query  407  GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN-VVVRYGLLTNEISM  465
            G +  S   T  DQ      F+ G L+ LV + + +EG+D+P     VV  GL  +    
Sbjct  494  GETPHSRRETHFDQ------FRTGALDALVVSRIGDEGIDLPDAEFAVVASGLGGSRRQG  547

Query  466  VQARGRAR--ADQSVYAFVATEGSRE  489
             Q  GR      QS+   +AT G+ E
Sbjct  548  AQRAGRTMRPGSQSLLFVLATRGTEE  573


>sp|Q9UMR2|DD19B_HUMAN ATP-dependent RNA helicase DDX19B OS=Homo 
sapiens OX=9606 GN=DDX19B PE=1 SV=1
Length=479

 Score = 35.0 bits (79),  Expect = 2.6, Method: Compositional matrix adjust.
 Identities = 22/90 (24%), Positives = 45/90 (50%), Gaps = 14/90 (16%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            + +IF  TR++A  L   L ++ G Q   +  ++++               +  VI++F+
Sbjct  335  QAMIFCHTRKTASWLAAELSKE-GHQVALLSGEMMV-------------EQRAAVIERFR  380

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGL  458
            +G   +LV T+V   G+D+   +VV+ + L
Sbjct  381  EGKEKVLVTTNVCARGIDVEQVSVVINFDL  410


>sp|Q73MY7|UVRB_TREDE UvrABC system protein B OS=Treponema denticola 
(strain ATCC 35405 / DSM 14222 / CIP 103919 / JCM 8153 
/ KCTC 15104) OX=243275 GN=uvrB PE=3 SV=1
Length=662

 Score = 35.0 bits (79),  Expect = 2.6, Method: Compositional matrix adjust.
 Identities = 25/115 (22%), Positives = 54/115 (47%), Gaps = 11/115 (10%)

Query  370  GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKF  427
            G +  R   +  SL+L L ++      D     L G G   +  H  +   ++ E+++  
Sbjct  434  GEVKKRIALNERSLILTLTKKMAEDLTD----YLTGLGLKVKYIHSEVETIERVEILKGL  489

Query  428  QDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRARADQS  477
            + G  ++L+  ++  EG+D+P  + +      + G L +  S++Q  GRA  +++
Sbjct  490  RAGEFDVLIGINLLREGIDLPEVSFIGILDADKIGFLRSTTSLIQIVGRAARNEN  544


>sp|Q9M2E0|RH12_ARATH DEAD-box ATP-dependent RNA helicase 12 OS=Arabidopsis 
thaliana OX=3702 GN=RH12 PE=2 SV=1
Length=498

 Score = 35.0 bits (79),  Expect = 2.7, Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 11/111 (10%)

Query  373  FTRTRQSAH---SLLLWLQQQQGL------QTVDIRAQLLIGAGNSSQSTH--MTQRDQQ  421
            F   RQ  H   +L   LQ  Q +        V++ A+ +   G S    H  M Q  + 
Sbjct  342  FVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRN  401

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA  472
             V  +F++G    LV T +   G+DI   NVV+ +       S +   GR+
Sbjct  402  RVFHEFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRS  452


>sp|Q6BRE4|DBP5_DEBHA ATP-dependent RNA helicase DBP5 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / 
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DBP5 PE=3 SV=1
Length=493

 Score = 35.0 bits (79),  Expect = 2.7, Method: Compositional matrix adjust.
 Identities = 24/89 (27%), Positives = 46/89 (52%), Gaps = 14/89 (16%)

Query  370  GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD  429
             IIF +T+ +A+ +L    +++G +   + A L             ++RD+  +I  F++
Sbjct  344  SIIFVKTKDTAN-ILYAKMKKEGHKCSILHAGL-----------ETSERDR--LIDDFRE  389

Query  430  GTLNLLVATSVAEEGLDIPHCNVVVRYGL  458
            G   +L+ T+V   G+DI   ++VV Y L
Sbjct  390  GRSKVLITTNVLARGIDIASVSMVVNYDL  418


>sp|Q9ZJ57|MFD_HELPJ Transcription-repair-coupling factor OS=Helicobacter 
pylori (strain J99 / ATCC 700824) OX=85963 GN=mfd 
PE=3 SV=1
Length=1001

 Score = 35.0 bits (79),  Expect = 2.7, Method: Compositional matrix adjust.
 Identities = 20/93 (22%), Positives = 43/93 (46%), Gaps = 10/93 (11%)

Query  413  THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQ  467
            + +   + +E++ +F  G   +L+ TS+ E G+ +P+ N ++      +GL      + Q
Sbjct  725  SQINANESEEIMLEFAKGNYQVLLCTSIVESGIHLPNANTIIIDNAQNFGL----ADLHQ  780

Query  468  ARGR-ARADQSVYAFVATEGSRELKRELINEAL  499
             RGR  R  +  + +   E  + L  + +   L
Sbjct  781  LRGRVGRGKKEGFCYFLIEDQKSLNEQALKRLL  813


>sp|Q95YF3|CGH1_CAEEL ATP-dependent RNA helicase cgh-1 OS=Caenorhabditis 
elegans OX=6239 GN=cgh-1 PE=1 SV=1
Length=430

 Score = 35.0 bits (79),  Expect = 2.7, Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 11/111 (10%)

Query  373  FTRTRQSAH---SLLLWLQQQQGL------QTVDIRAQLLIGAGNSSQSTH--MTQRDQQ  421
            F + +Q  H   +L   LQ  Q +      Q V++ A+ +   G S    H  M Q  + 
Sbjct  261  FVQEKQKVHCLNTLFRKLQINQSIIFCNSTQRVELLAKKITEIGYSCYYIHSKMAQNHRN  320

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA  472
             V   F+ G    LV + +   G+DI   NVV+ +    N  + +   GR+
Sbjct  321  RVFHDFRQGNCRNLVCSDLLTRGIDIQAVNVVINFDFPRNAETYLHRIGRS  371


>sp|Q042E2|UVRB_LACGA UvrABC system protein B OS=Lactobacillus 
gasseri (strain ATCC 33323 / DSM 20243 / BCRC 14619 / CIP 102991 
/ JCM 1131 / KCTC 3163 / NCIMB 11718 / NCTC 13722 / AM63) 
OX=324831 GN=uvrB PE=3 SV=1
Length=671

 Score = 35.0 bits (79),  Expect = 2.7, Method: Compositional matrix adjust.
 Identities = 32/141 (23%), Positives = 57/141 (40%), Gaps = 25/141 (18%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRAR---  473
            E+I+  + G  ++L+  ++  EG+D+P  ++V      + G L +   +VQ  GRA    
Sbjct  491  EIIRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRSTRPLVQTIGRAARNS  550

Query  474  -----------ADQSVYAFVATEGSRELKRELINE------ALETLMEQAVAAVQKMDQA  516
                        D    A  ATE  R L+ +   E       +   +   ++  +  D+ 
Sbjct  551  NGKVIMYADSITDSMREAIDATERRRSLQMKFNKEHGITPKTIVKPIRDVISITKDSDEK  610

Query  517  EYQAKIRDLQQAALTKRAAQA  537
            E +    DL    LTK+  Q 
Sbjct  611  ENKESFADLNFDELTKKQKQT  631


>sp|P41381|IF4A8_TOBAC Eukaryotic initiation factor 4A-8 OS=Nicotiana 
tabacum OX=4097 PE=2 SV=1
Length=413

 Score = 34.7 bits (78),  Expect = 2.7, Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 56/125 (45%), Gaps = 21/125 (17%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQ  428
            +IF  TR+       WL  +  ++T D          ++  +TH  M Q  +  ++++F+
Sbjct  283  VIFVNTRRKVD----WLTDK--MRTRD----------HTVSATHGDMDQNTRDIIMREFR  326

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT---NEISMVQARGRARADQSVYAFVATE  485
             G+  +L+ T +   G+D+   ++V+ Y L T   N +  +   GR         FV T+
Sbjct  327  SGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTD  386

Query  486  GSREL  490
              R L
Sbjct  387  DERML  391


>sp|Q27268|DX39B_DROME ATP-dependent RNA helicase WM6 OS=Drosophila 
melanogaster OX=7227 GN=Hel25E PE=1 SV=1
Length=424

 Score = 34.7 bits (78),  Expect = 2.8, Method: Compositional matrix adjust.
 Identities = 23/83 (28%), Positives = 39/83 (47%), Gaps = 3/83 (4%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE---ISMVQARGR  471
            MTQ ++    Q+F+D    +LVAT++   G+DI   N+V  Y +  +    +  V   GR
Sbjct  318  MTQEERLNRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGR  377

Query  472  ARADQSVYAFVATEGSRELKREL  494
                     FV+ E   ++  E+
Sbjct  378  FGTKGLAITFVSDENDAKILNEV  400


>sp|Q9NUU7|DD19A_HUMAN ATP-dependent RNA helicase DDX19A OS=Homo 
sapiens OX=9606 GN=DDX19A PE=1 SV=1
Length=478

 Score = 35.0 bits (79),  Expect = 2.8, Method: Compositional matrix adjust.
 Identities = 22/90 (24%), Positives = 45/90 (50%), Gaps = 14/90 (16%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            + +IF  TR++A  L   L ++ G Q   +  ++++               +  VI++F+
Sbjct  334  QAMIFCHTRKTASWLAAELSKE-GHQVALLSGEMMV-------------EQRAAVIERFR  379

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGL  458
            +G   +LV T+V   G+D+   +VV+ + L
Sbjct  380  EGKEKVLVTTNVCARGIDVEQVSVVINFDL  409


>sp|Q61655|DD19A_MOUSE ATP-dependent RNA helicase DDX19A OS=Mus 
musculus OX=10090 GN=Ddx19a PE=1 SV=2
Length=478

 Score = 34.7 bits (78),  Expect = 2.9, Method: Compositional matrix adjust.
 Identities = 22/90 (24%), Positives = 45/90 (50%), Gaps = 14/90 (16%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            + +IF  TR++A  L   L ++ G Q   +  ++++               +  VI++F+
Sbjct  334  QAMIFCHTRKTASWLAAELSKE-GHQVALLSGEMMV-------------EQRAAVIERFR  379

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGL  458
            +G   +LV T+V   G+D+   +VV+ + L
Sbjct  380  EGKEKVLVTTNVCARGIDVEQVSVVINFDL  409


>sp|P24125|V51K_BPL79 51.5 kDa protein OS=Lactococcus phage (isolate 
7-9) OX=12375 PE=4 SV=1
Length=452

 Score = 34.7 bits (78),  Expect = 2.9, Method: Compositional matrix adjust.
 Identities = 20/98 (20%), Positives = 46/98 (47%), Gaps = 14/98 (14%)

Query  357  ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT  416
            ++Q     +N  + I++  + +++ S     Q+  G++ V + A+           T   
Sbjct  178  VVQEYVKHANGQKAILYAHSVEASQSFAKEFQEA-GIKAVHVDAK-----------TPKN  225

Query  417  QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV  454
            +RD+  ++  F++G + +L    +  EG D+P C V +
Sbjct  226  ERDK--LMLDFRNGRIKVLCNVDLISEGFDVPDCTVTI  261


>sp|Q887N8|RHLB_PSESM ATP-dependent RNA helicase RhlB OS=Pseudomonas 
syringae pv. tomato (strain ATCC BAA-871 / DC3000) OX=223283 
GN=rhlB PE=3 SV=1
Length=397

 Score = 34.7 bits (78),  Expect = 2.9, Method: Compositional matrix adjust.
 Identities = 26/97 (27%), Positives = 49/97 (51%), Gaps = 4/97 (4%)

Query  398  IRAQLLIGAGNSSQ-STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY  456
            I  +L+    N++Q S  + Q  + + ++ F++G + +LVAT VA  G+ I   + V+ +
Sbjct  272  IEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINF  331

Query  457  GL---LTNEISMVQARGRARADQSVYAFVATEGSREL  490
             L     + +  +   GRA AD    +F   + S +L
Sbjct  332  TLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSYQL  368


>sp|A2QAX7|DRS1_ASPNC ATP-dependent RNA helicase drs1 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=drs1 PE=3 SV=1
Length=824

 Score = 35.0 bits (79),  Expect = 2.9, Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 42/88 (48%), Gaps = 17/88 (19%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            R I+F R ++ AH + +      GL  + ++A  L G+ +  QS           ++ F+
Sbjct  556  RVIVFFRQKKEAHRVRIIF----GL--LGLKAAELHGSMSQEQS-----------VENFR  598

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRY  456
            +G    L+AT +A  GLDI     V+ Y
Sbjct  599  EGKAAFLLATDLASRGLDIKGVETVINY  626


>sp|A7TGU7|DHH1_VANPO ATP-dependent RNA helicase DHH1 OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=DHH1 PE=3 SV=1
Length=484

 Score = 34.7 bits (78),  Expect = 2.9, Method: Compositional matrix adjust.
 Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 11/111 (10%)

Query  373  FTRTRQSAH---SLLLWLQQQQGL------QTVDIRAQLLIGAGNSSQSTH--MTQRDQQ  421
            F   +Q  H   +L   LQ  Q +        V++ A+ +   G S   +H  M Q+++ 
Sbjct  252  FVEEKQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERN  311

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA  472
             V  +F+ G +  LV + +   G+DI   NVV+ +       + +   GR+
Sbjct  312  RVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRS  362


>sp|O01836|GLH3_CAEEL ATP-dependent RNA helicase glh-3 OS=Caenorhabditis 
elegans OX=6239 GN=glh-3 PE=1 SV=1
Length=720

 Score = 35.0 bits (79),  Expect = 3.0, Method: Compositional matrix adjust.
 Identities = 17/55 (31%), Positives = 30/55 (55%), Gaps = 0/55 (0%)

Query  417  QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
            Q+++   ++ F+ G   +L+AT+V E GLDI   + V+ Y +  N    +   GR
Sbjct  599  QKERSAALKLFRSGAKPVLIATAVVERGLDIKGVDHVINYDMPNNIDDYIHRIGR  653


>sp|Q6FU81|MS116_CANGA ATP-dependent RNA helicase MSS116, mitochondrial 
OS=Candida glabrata (strain ATCC 2001 / BCRC 20586 
/ JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=MSS116 
PE=3 SV=1
Length=666

 Score = 35.0 bits (79),  Expect = 3.0, Method: Compositional matrix adjust.
 Identities = 19/74 (26%), Positives = 36/74 (49%), Gaps = 3/74 (4%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGR  471
            + Q+ +  ++ +F+     LLV T V   G+D P+   V++ GL   + N I  +    R
Sbjct  460  IDQKKRTRIVNEFKTMKKGLLVCTDVGARGMDFPNITEVLQIGLPSEIPNYIHRIGRTAR  519

Query  472  ARADQSVYAFVATE  485
            +  + S   F++ E
Sbjct  520  SGKEGSSVTFISKE  533


>sp|A1SAL1|RHLB_SHEAM ATP-dependent RNA helicase RhlB OS=Shewanella 
amazonensis (strain ATCC BAA-1098 / SB2B) OX=326297 GN=rhlB 
PE=3 SV=1
Length=439

 Score = 34.7 bits (78),  Expect = 3.0, Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 54/129 (42%), Gaps = 15/129 (12%)

Query  349  PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN  408
            P +E   K+L          + I+F  T+    +L  W      L+    R  LL G   
Sbjct  238  PSMEDKLKLLHSLIEEDWPEKAIVFANTKYQCENL--W----ASLEADGHRVGLLTG---  288

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
                  + Q+ + +++++F    L++LVAT VA  GL I   + V  Y L  +    V  
Sbjct  289  -----DVPQKKRLKILEQFTQSELDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHR  343

Query  469  RGR-ARADQ  476
             GR  RA Q
Sbjct  344  IGRTGRAGQ  352


>sp|A3BT52|RH29_ORYSJ DEAD-box ATP-dependent RNA helicase 29 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os08g0416100 PE=2 
SV=2
Length=851

 Score = 35.0 bits (79),  Expect = 3.0, Method: Compositional matrix adjust.
 Identities = 38/124 (31%), Positives = 54/124 (44%), Gaps = 17/124 (14%)

Query  365  SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI  424
            S+  + IIF  T+     L + L +++GL+       L  GA        M Q  +   I
Sbjct  290  SSEEQTIIFVSTKHHVEFLNI-LFREEGLE-----PSLSYGA--------MDQEARNIHI  335

Query  425  QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQS--VYAF  481
             KF+     +L+ T VA  GLDIP  + VV +         V   GR AR  +S   Y F
Sbjct  336  SKFRARKTMILIVTDVAARGLDIPLLDNVVNWDFPAKPKLFVHRVGRVARQGRSGTAYTF  395

Query  482  VATE  485
            V +E
Sbjct  396  VTSE  399


>sp|A7TGW7|DBP10_VANPO ATP-dependent RNA helicase DBP10 OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 
21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=DBP10 PE=3 SV=1
Length=977

 Score = 35.0 bits (79),  Expect = 3.1, Method: Compositional matrix adjust.
 Identities = 20/56 (36%), Positives = 29/56 (52%), Gaps = 1/56 (2%)

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF  481
            F+ G  ++LV T VA  G+DIP    V+ Y L  +    +   GR ARA    +A+
Sbjct  464  FRAGLTSILVVTDVAARGVDIPMLANVINYSLPASSKIFIHRVGRTARAGNRGWAY  519


>sp|Q6FNA2|DBP10_CANGA ATP-dependent RNA helicase DBP10 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DBP10 PE=3 SV=1
Length=969

 Score = 35.0 bits (79),  Expect = 3.1, Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR  473
            + Q  ++  +  F+ G  ++LV T VA  G+DIP    VV Y L  +    +   GR AR
Sbjct  441  LDQHARKSQLYNFRIGLTSILVVTDVAARGVDIPMLANVVNYSLPASSKIFIHRVGRTAR  500

Query  474  ADQSVYAF  481
            A    +A+
Sbjct  501  AGNRGWAY  508


>sp|Q9Z7A5|UVRB_CHLPN UvrABC system protein B OS=Chlamydia pneumoniae 
OX=83558 GN=uvrB PE=3 SV=1
Length=657

 Score = 34.7 bits (78),  Expect = 3.1, Method: Compositional matrix adjust.
 Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 6/82 (7%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGR-A  472
            ++ +++   + G +++L+  ++  EGLD+P  ++V      + G L +  S++Q  GR A
Sbjct  480  ERTQILTDLRSGVIDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSTSSLIQFCGRAA  539

Query  473  RADQSVYAFVATEGSRELKREL  494
            R       F A + +R ++  L
Sbjct  540  RNINGKVIFYADQKTRSIEETL  561


>sp|Q17YL7|UVRB_HELAH UvrABC system protein B OS=Helicobacter 
acinonychis (strain Sheeba) OX=382638 GN=uvrB PE=3 SV=1
Length=658

 Score = 34.7 bits (78),  Expect = 3.1, Method: Compositional matrix adjust.
 Identities = 16/59 (27%), Positives = 33/59 (56%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++  +I+  +    ++L+  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  486  ERNHIIRSLRLKEFDVLIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQTMGRA  544


>sp|Q5BCI0|MAK5_EMENI ATP-dependent RNA helicase mak5 OS=Emericella 
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 
194 / M139) OX=227321 GN=mak5 PE=3 SV=1
Length=770

 Score = 35.0 bits (79),  Expect = 3.1, Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 36/74 (49%), Gaps = 4/74 (5%)

Query  413  THMTQRDQQEVIQKFQDGTLN---LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
            + M Q+ +   +++F   T N   +LVAT VA  GLDI   + V+ Y       + V   
Sbjct  531  SSMAQKARLRSVERFSSSTANPGTILVATDVAARGLDIKGIDFVIHYHAPRTADTYVHRS  590

Query  470  GR-ARADQSVYAFV  482
            GR ARA  S  + +
Sbjct  591  GRTARAGASGKSVI  604


>sp|Q747K3|UVRB_GEOSL UvrABC system protein B OS=Geobacter sulfurreducens 
(strain ATCC 51573 / DSM 12127 / PCA) OX=243231 
GN=uvrB PE=3 SV=1
Length=664

 Score = 34.7 bits (78),  Expect = 3.1, Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 33/58 (57%), Gaps = 5/58 (9%)

Query  420  QQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            + ++I+  + G  ++LV  ++  EGLDIP  ++V      + G L +  S++Q  GRA
Sbjct  484  RMQIIRDLRMGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSARSLIQTCGRA  541


>sp|A1BI09|UVRB_CHLPD UvrABC system protein B OS=Chlorobium phaeobacteroides 
(strain DSM 266 / SMG 266 / 2430) OX=290317 GN=uvrB 
PE=3 SV=1
Length=685

 Score = 34.7 bits (78),  Expect = 3.2, Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            +++++ + G + +LV  ++  EGLD+P  ++V      + G L N  S++Q  GRA
Sbjct  491  QILRELRAGDVEVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNTRSLMQIAGRA  546


>sp|Q3ZBV2|DD19A_BOVIN ATP-dependent RNA helicase DDX19A OS=Bos 
taurus OX=9913 GN=DDX19A PE=2 SV=1
Length=478

 Score = 34.7 bits (78),  Expect = 3.2, Method: Compositional matrix adjust.
 Identities = 26/90 (29%), Positives = 44/90 (49%), Gaps = 14/90 (16%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            + +IF  TR++A  L   L ++ G Q       LL G         M    +  VI++F+
Sbjct  334  QAMIFCHTRKTASWLAAELSKE-GHQVA-----LLSG--------EMVVEQRAAVIERFR  379

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGL  458
            +G   +LV T+V   G+D+   +VV+ + L
Sbjct  380  EGKEKVLVTTNVCARGIDVEQVSVVINFDL  409


>sp|Q40469|IF4A6_TOBAC Eukaryotic initiation factor 4A-6 (Fragment) 
OS=Nicotiana tabacum OX=4097 PE=2 SV=1
Length=253

 Score = 34.3 bits (77),  Expect = 3.2, Method: Compositional matrix adjust.
 Identities = 23/105 (22%), Positives = 48/105 (46%), Gaps = 18/105 (17%)

Query  370  GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKF  427
             +IF  TR+       WL  +            + G  ++  +TH  M Q  +  ++++F
Sbjct  123  SVIFVNTRRKVD----WLTDK------------MRGRDHTVSATHGDMDQNTRDIIMREF  166

Query  428  QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA  472
            + G+  +L+ T +   G+D+   ++V+ Y L T   + +   GR+
Sbjct  167  RSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRS  211


>sp|Q2UST1|MS116_ASPOR ATP-dependent RNA helicase mss116, mitochondrial 
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) 
OX=510516 GN=mss116 PE=3 SV=1
Length=633

 Score = 34.7 bits (78),  Expect = 3.2, Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 36/71 (51%), Gaps = 1/71 (1%)

Query  413  THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-  471
            + ++Q  + +    F++    ++ A+ V   G+D P+ ++V++ GL +N    V   GR 
Sbjct  384  SRLSQSARTKTTALFKEAATGIMFASDVIGRGMDFPNVDLVIQVGLPSNGEQYVHRVGRT  443

Query  472  ARADQSVYAFV  482
            ARA     A +
Sbjct  444  ARAGNDGRAII  454


>sp|A2YV85|RH29_ORYSI DEAD-box ATP-dependent RNA helicase 29 OS=Oryza 
sativa subsp. indica OX=39946 GN=OsI_028228 PE=2 SV=2
Length=851

 Score = 35.0 bits (79),  Expect = 3.2, Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 61/139 (44%), Gaps = 19/139 (14%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            KL  L  +++ + SS    + IIF  T+     L + L +++GL+       L  GA   
Sbjct  277  KLAALLYLVRERISSEE--QTIIFVSTKHHVEFLNI-LFREEGLE-----PSLSYGA---  325

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 M Q  +   I KF+     +L+ T VA  GLDIP  + VV +         V   
Sbjct  326  -----MDQEARNIHISKFRARKTMILIVTDVAARGLDIPLLDNVVNWDFPAKPKLFVHRV  380

Query  470  GR-ARADQS--VYAFVATE  485
            GR AR  +S   Y FV +E
Sbjct  381  GRVARQGRSGTAYTFVTSE  399


>sp|A5DL80|DBP2_PICGU ATP-dependent RNA helicase DBP2 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DBP2 PE=3 
SV=3
Length=554

 Score = 34.7 bits (78),  Expect = 3.2, Method: Compositional matrix adjust.
 Identities = 30/112 (27%), Positives = 57/112 (51%), Gaps = 9/112 (8%)

Query  417  QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARAD  475
            Q ++  V+++F+ G   ++VAT VA  G+D+   + V+ Y +  N    V   GR  RA 
Sbjct  408  QNERDWVLREFKTGKSPIMVATDVAARGIDVKGISYVINYDMPGNIEDYVHRIGRTGRAG  467

Query  476  QSVYAF-VATEGSRELKREL---INEALETLMEQAVAAVQKMDQAEYQAKIR  523
             +  A  + TE + +L  +L   + EA +T+  + +    + D+  + + IR
Sbjct  468  TTGTAVSLFTEANSKLGGDLCKIMREANQTVPPELL----RYDRRSFGSHIR  515


>sp|A5DZX2|DBP5_LODEL ATP-dependent RNA helicase DBP5 OS=Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=DBP5 PE=3 SV=1
Length=511

 Score = 34.7 bits (78),  Expect = 3.3, Method: Compositional matrix adjust.
 Identities = 26/88 (30%), Positives = 43/88 (49%), Gaps = 14/88 (16%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            IIF   + +A SL L ++++    TV I    L G         +   D+  +I  F++G
Sbjct  358  IIFVEQKATADSLYLRMKEEG--HTVSI----LHGG--------LEVADRDRLIDDFREG  403

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGL  458
               +L+ T+V   G+DI   ++VV Y L
Sbjct  404  RSKVLITTNVLARGIDIATVSMVVNYDL  431


>sp|Q8L4E9|RH36_ORYSJ DEAD-box ATP-dependent RNA helicase 36 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os07g0633500 PE=3 
SV=1
Length=501

 Score = 34.7 bits (78),  Expect = 3.3, Method: Compositional matrix adjust.
 Identities = 43/195 (22%), Positives = 80/195 (41%), Gaps = 27/195 (14%)

Query  336  NELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQT  395
            + L  L  H P + K E+    L  + +  N    I+F  T ++   L   L++      
Sbjct  291  DTLKQLYIHVPPDAK-ELYLFYLLSKMNEDNIRSVIVFVSTCRTCQYLDFLLEE------  343

Query  396  VDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVR  455
                    +G    S  +H  Q  +   +  F+   + +L+AT VA  GLDI   ++V+ 
Sbjct  344  --------LGHPAVSLHSHKPQSRRLAALHNFKSSKVPVLLATDVASRGLDIQTVDLVIN  395

Query  456  YGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMD  514
            Y +       +   GR ARA +   +       R+++  L++E  + + +Q  A      
Sbjct  396  YDVPRYPRDYIHRVGRTARATRGGLSISFITTQRDIR--LLHEIEDVVGKQLGA------  447

Query  515  QAEYQAKIRDLQQAA  529
               Y  ++RD+ + A
Sbjct  448  ---YDGEMRDVNKDA  459


>sp|Q9ZKA0|UVRB_HELPJ UvrABC system protein B OS=Helicobacter 
pylori (strain J99 / ATCC 700824) OX=85963 GN=uvrB PE=3 SV=1
Length=658

 Score = 34.7 bits (78),  Expect = 3.3, Method: Compositional matrix adjust.
 Identities = 16/59 (27%), Positives = 33/59 (56%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++  +I+  +    ++L+  ++  EGLD+P  ++V      + G L +E S++Q  GRA
Sbjct  486  ERNHIIRSLRLKEFDVLIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQTMGRA  544


>sp|Q94BV4|RH6_ARATH DEAD-box ATP-dependent RNA helicase 6 OS=Arabidopsis 
thaliana OX=3702 GN=RH6 PE=2 SV=2
Length=528

 Score = 34.7 bits (78),  Expect = 3.3, Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 45/111 (41%), Gaps = 11/111 (10%)

Query  373  FTRTRQSAH---SLLLWLQQQQGL------QTVDIRAQLLIGAGNSSQSTH--MTQRDQQ  421
            F   RQ  H   +L   LQ  Q +        V++ A+ +   G S    H  M Q  + 
Sbjct  372  FVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRN  431

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA  472
             V   F++G    LV T +   G+DI   NVV+ +       S +   GR+
Sbjct  432  RVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRS  482


>sp|Q54BD6|DDX51_DICDI Probable ATP-dependent RNA helicase ddx51 
OS=Dictyostelium discoideum OX=44689 GN=ddx51 PE=3 SV=1
Length=563

 Score = 34.7 bits (78),  Expect = 3.3, Method: Compositional matrix adjust.
 Identities = 28/152 (18%), Positives = 67/152 (44%), Gaps = 12/152 (8%)

Query  340  HLATHGPENPKLEM---LEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTV  396
            ++ ++G + P + +    E +L+   +  N  + I FT++    H L   L+    +  +
Sbjct  296  YIISNGDQKPLVLLNIIYESLLKNNANGENKKKIICFTKSVDITHRLNTLLKLIGQVDKL  355

Query  397  DIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY  456
                +          S+ ++  ++ +++ +F+   +++L+ + +   G+DI   +VV+ Y
Sbjct  356  KFTCE--------EYSSSLSTVERADLLSRFKLNQIDILICSDIMSRGMDIQDIDVVINY  407

Query  457  GLLTNEISMVQARGR-ARADQSVYAFVATEGS  487
                N    V   GR ARA     ++   + S
Sbjct  408  NTPPNITLYVHRVGRTARAGNFGVSYTIVDKS  439


>sp|B4GEU5|SPNE_DROPE Probable ATP-dependent RNA helicase spindle-E 
OS=Drosophila persimilis OX=7234 GN=spn-E PE=3 SV=1
Length=1434

 Score = 35.0 bits (79),  Expect = 3.3, Method: Compositional matrix adjust.
 Identities = 14/44 (32%), Positives = 26/44 (59%), Gaps = 0/44 (0%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL  458
            MT  DQ+E+ Q    G   +++AT+VAE  + +P  + ++ + L
Sbjct  407  MTSEDQREIFQPSPPGYRKIIMATNVAESSITVPDVSYIIDFCL  450


>sp|Q6CWQ5|MRH4_KLULA ATP-dependent RNA helicase MRH4, mitochondrial 
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 
/ DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=MRH4 
PE=3 SV=1
Length=584

 Score = 34.7 bits (78),  Expect = 3.4, Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 31/65 (48%), Gaps = 2/65 (3%)

Query  425  QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVA  483
            + F + TL +LV T V   G++   C  VV Y +    + +V   GR  R +Q    F+ 
Sbjct  502  EAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKGSVFII  561

Query  484  TEGSR  488
            T G R
Sbjct  562  T-GKR  565


>sp|O34750|YFML_BACSU Probable ATP-dependent RNA helicase YfmL 
OS=Bacillus subtilis (strain 168) OX=224308 GN=yfmL PE=1 SV=1
Length=376

 Score = 34.3 bits (77),  Expect = 3.4, Method: Compositional matrix adjust.
 Identities = 23/77 (30%), Positives = 40/77 (52%), Gaps = 4/77 (5%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR---GRARAD  475
            ++ ++I  F+DG   LL+AT +A  GLDI +   V+ +  + +E   V      GRA  +
Sbjct  279  ERAKIIATFEDGEFPLLLATDIAARGLDIENLPYVI-HADIPDEDGYVHRSGRTGRAGKE  337

Query  476  QSVYAFVATEGSRELKR  492
             +V + V      +LK+
Sbjct  338  GNVLSLVTKLEESKLKK  354


>sp|P40724|RECQ_SALTY ATP-dependent DNA helicase RecQ OS=Salmonella 
typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 
GN=recQ PE=3 SV=3
Length=609

 Score = 34.7 bits (78),  Expect = 3.4, Method: Compositional matrix adjust.
 Identities = 37/155 (24%), Positives = 59/155 (38%), Gaps = 23/155 (15%)

Query  326  RLLALFDDRKNELAHLATHGPENPKLEMLEKI-----LQRQFSSSNSPRGIIFTRTRQSA  380
            RLL L D     L  +++    N +  ++EK      L R         GII+  +R   
Sbjct  194  RLLGLND----PLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKV  249

Query  381  HSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSV  440
                  LQ +              G   ++    +    + +V +KFQ   L ++VAT  
Sbjct  250  EDTAARLQSR--------------GISAAAYHAGLENAIRVDVQEKFQRDDLQIVVATVA  295

Query  441  AEEGLDIPHCNVVVRYGLLTNEISMVQARGRARAD  475
               G++ P+   VV + +  N  S  Q  GRA  D
Sbjct  296  FGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRD  330


>sp|Q9VVK8|DDX52_DROME Probable ATP-dependent RNA helicase DDX52 
OS=Drosophila melanogaster OX=7227 GN=ais PE=1 SV=1
Length=594

 Score = 34.7 bits (78),  Expect = 3.5, Method: Compositional matrix adjust.
 Identities = 29/129 (22%), Positives = 59/129 (46%), Gaps = 16/129 (12%)

Query  417  QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARAD  475
            QRD    ++ F++G++ +L+ T +   G+D    N+V+ Y      IS +   GR  RA 
Sbjct  404  QRDN--CVKAFREGSIWVLICTELMGRGIDFKGVNLVINYDFPPTTISYIHRIGRTGRAG  461

Query  476  QSVYA--FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKR  533
            +   A  F   E +  L+       +  +++ +   V      EY  +++ ++++    R
Sbjct  462  RPGRAITFFTQEDTSNLR------GIALIIKNSGGTV-----PEYMLQMKKVRKSEAKMR  510

Query  534  AAQAAQREN  542
            A +   RE+
Sbjct  511  AKKPLDRED  519


>sp|A9WT85|UVRB_RENSM UvrABC system protein B OS=Renibacterium 
salmoninarum (strain ATCC 33209 / DSM 20767 / JCM 11484 / NBRC 
15589 / NCIMB 2235) OX=288705 GN=uvrB PE=3 SV=1
Length=693

 Score = 34.7 bits (78),  Expect = 3.6, Method: Compositional matrix adjust.
 Identities = 22/79 (28%), Positives = 42/79 (53%), Gaps = 7/79 (9%)

Query  401  QLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV----  454
            + L+G G   Q  H  +    + E++++ + G  ++LV  ++  EGLD+P  ++V     
Sbjct  471  EYLLGHGVKVQYLHSDVDTLRRVELLRELRLGVFDVLVGINLLREGLDLPEVSLVSILDA  530

Query  455  -RYGLLTNEISMVQARGRA  472
             + G L +  S++Q  GRA
Sbjct  531  DKEGFLRSATSLIQTIGRA  549


>sp|Q2UMH8|DBP3_ASPOR ATP-dependent RNA helicase dbp3 OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=dbp3 
PE=3 SV=1
Length=498

 Score = 34.7 bits (78),  Expect = 3.6, Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 4/75 (5%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL-LTNE--ISMVQARGR  471
            ++Q+++   +  F+ G   +LVAT VA  GLDIP    V+     LT E  +  +   GR
Sbjct  367  LSQQERFRSLDAFKTGAATVLVATDVAARGLDIPSVKQVINVTFPLTVEDYVHRIGRTGR  426

Query  472  ARAD-QSVYAFVATE  485
            A A+  +V  F  T+
Sbjct  427  AGAEGHAVTLFTETD  441


>sp|Q829Y6|UVRB_STRAW UvrABC system protein B OS=Streptomyces 
avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NBRC 
14893 / NCIMB 12804 / NRRL 8165 / MA-4680) OX=227882 GN=uvrB 
PE=3 SV=1
Length=713

 Score = 34.7 bits (78),  Expect = 3.7, Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E++++ + G  ++LV  ++  EGLD+P  ++V      + G L +  S++Q  GRA
Sbjct  494  ELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRA  549


>sp|A5DB98|IF4A_PICGU ATP-dependent RNA helicase eIF4A OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=TIF1 PE=3 
SV=1
Length=396

 Score = 34.3 bits (77),  Expect = 3.7, Method: Compositional matrix adjust.
 Identities = 13/48 (27%), Positives = 29/48 (60%), Gaps = 0/48 (0%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE  462
            + Q D+  ++ +F+ G+  +L+AT +   G+D+   ++V+ Y L  N+
Sbjct  295  LPQSDRDTIMNEFRSGSSRILIATDLLARGIDVQQVSLVINYDLPANK  342


>sp|B2S264|UVRB_TREPS UvrABC system protein B OS=Treponema pallidum 
subsp. pallidum (strain SS14) OX=455434 GN=uvrB PE=3 SV=1
Length=668

 Score = 34.7 bits (78),  Expect = 3.7, Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 64/151 (42%), Gaps = 34/151 (23%)

Query  354  LEKILQR-QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQS  412
            +E I QR +  S+ + R ++ T T++ A  L  +                  G G  ++ 
Sbjct  429  IEDICQRVKACSARNERSLVLTLTKKMAEDLTDYFN----------------GLGIRTKY  472

Query  413  TH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPH--------CNVVVRYGLLTNE  462
             H  +   ++ E++   + G   +LV  ++  EG+D+P          N+V   G L + 
Sbjct  473  VHSEIETIERVEILTSLRAGECEVLVGINLLREGIDLPEVAFIAILDANIV---GFLRST  529

Query  463  ISMVQARGR----ARADQSVYAFVATEGSRE  489
             S++Q  GR    AR    +YA   ++  RE
Sbjct  530  TSLIQIIGRAARNARGTVVMYADAISDAMRE  560


>sp|O83154|UVRB_TREPA UvrABC system protein B OS=Treponema pallidum 
(strain Nichols) OX=243276 GN=uvrB PE=3 SV=1
Length=668

 Score = 34.7 bits (78),  Expect = 3.7, Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 64/151 (42%), Gaps = 34/151 (23%)

Query  354  LEKILQR-QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQS  412
            +E I QR +  S+ + R ++ T T++ A  L  +                  G G  ++ 
Sbjct  429  IEDICQRVKACSARNERSLVLTLTKKMAEDLTDYFN----------------GLGIRTKY  472

Query  413  TH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPH--------CNVVVRYGLLTNE  462
             H  +   ++ E++   + G   +LV  ++  EG+D+P          N+V   G L + 
Sbjct  473  VHSEIETIERVEILTSLRAGECEVLVGINLLREGIDLPEVAFIAILDANIV---GFLRST  529

Query  463  ISMVQARGR----ARADQSVYAFVATEGSRE  489
             S++Q  GR    AR    +YA   ++  RE
Sbjct  530  TSLIQIIGRAARNARGTVVMYADAISDAMRE  560


>sp|Q929G1|DCUP_LISIN Uroporphyrinogen decarboxylase OS=Listeria 
innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262) OX=272626 
GN=hemE PE=3 SV=1
Length=350

 Score = 34.3 bits (77),  Expect = 3.7, Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 31/61 (51%), Gaps = 4/61 (7%)

Query  190  ANLDTWCIMSPQNCCPQ----LQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLE  245
             NLD   +++P+ C  +    LQE   +P   +NL H    +   ++LKKL   IH+  E
Sbjct  285  GNLDPSTLLAPEKCIAETERILQEGILEPGYIFNLGHGVFPEVPPEMLKKLTKYIHERSE  344

Query  246  M  246
            +
Sbjct  345  I  345


>sp|Q1RI82|MFD_RICBR Transcription-repair-coupling factor OS=Rickettsia 
bellii (strain RML369-C) OX=336407 GN=mfd PE=3 SV=1
Length=1120

 Score = 34.7 bits (78),  Expect = 3.8, Method: Compositional matrix adjust.
 Identities = 18/78 (23%), Positives = 39/78 (50%), Gaps = 2/78 (3%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN-VVVRYGLLTNEISMVQARGR-A  472
            M+     E++ +F  G  ++L++T++ E G+DI   N +++    +     + Q RGR  
Sbjct  825  MSPNKIDEIMSEFYAGKFDILISTTIIESGIDIQDANTMIIHKADMLGLSQLYQLRGRIG  884

Query  473  RADQSVYAFVATEGSREL  490
            R     YA++     +++
Sbjct  885  RGKMRGYAYLTLPSHKKM  902


>sp|Q30ZK3|UVRB_OLEA2 UvrABC system protein B OS=Oleidesulfovibrio 
alaskensis (strain ATCC BAA-1058 / DSM 17464 / G20) OX=207559 
GN=uvrB PE=3 SV=1
Length=682

 Score = 34.7 bits (78),  Expect = 3.8, Method: Compositional matrix adjust.
 Identities = 22/79 (28%), Positives = 40/79 (51%), Gaps = 7/79 (9%)

Query  401  QLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV----  454
            + L   G S++  H  +   ++  +IQ  +    ++LV  ++  EGLDIP  ++V     
Sbjct  465  EYLTSMGVSARYLHSDIDTMERMAIIQALRRKEFDVLVGINLLREGLDIPEVSLVAILDA  524

Query  455  -RYGLLTNEISMVQARGRA  472
             + G L +  S++Q  GRA
Sbjct  525  DKEGFLRSTGSLIQTFGRA  543


>sp|Q81DF9|CSHE_BACCR DEAD-box ATP-dependent RNA helicase CshE 
OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 
/ JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711) 
OX=226900 GN=cshE PE=2 SV=1
Length=458

 Score = 34.3 bits (77),  Expect = 3.9, Method: Compositional matrix adjust.
 Identities = 31/126 (25%), Positives = 52/126 (41%), Gaps = 21/126 (17%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQ  428
            +IF RT+  A  L   L+                G G +    H  + Q  ++ V++ F+
Sbjct  248  VIFCRTKVRASKLYDNLK----------------GLGYNCAELHGDIPQAKRERVMKSFR  291

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGRARADQSVYAFVATE  485
            +  +  L+AT VA  GLD+     V  Y +   + + I  +   GRA        FVA +
Sbjct  292  EAKIQYLIATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAK  351

Query  486  GSRELK  491
              + L+
Sbjct  352  DEKHLE  357


>sp|P0CQ94|DBP7_CRYNJ ATP-dependent RNA helicase DBP7 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=DBP7 PE=3 SV=1
Length=948

 Score = 34.7 bits (78),  Expect = 3.9, Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 30/56 (54%), Gaps = 5/56 (9%)

Query  433  NLLVATSVAEEGLDIPHCNVVVRYGLLT----NE-ISMVQARGRARADQSVYAFVA  483
            ++L ATSVA  GLD+P    VV+Y L T    NE +  V    RA      +AFV+
Sbjct  671  SVLFATSVASRGLDLPLVRAVVQYDLPTEGGANEYVHRVGRTARAGKGGEAWAFVS  726


>sp|P0CQ95|DBP7_CRYNB ATP-dependent RNA helicase DBP7 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=DBP7 PE=3 SV=1
Length=948

 Score = 34.7 bits (78),  Expect = 3.9, Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 30/56 (54%), Gaps = 5/56 (9%)

Query  433  NLLVATSVAEEGLDIPHCNVVVRYGLLT----NE-ISMVQARGRARADQSVYAFVA  483
            ++L ATSVA  GLD+P    VV+Y L T    NE +  V    RA      +AFV+
Sbjct  671  SVLFATSVASRGLDLPLVRAVVQYDLPTEGGANEYVHRVGRTARAGKGGEAWAFVS  726


>sp|Q8CK11|UVRB_STRCO UvrABC system protein B OS=Streptomyces 
coelicolor (strain ATCC BAA-471 / A3(2) / M145) OX=100226 GN=uvrB 
PE=3 SV=1
Length=712

 Score = 34.7 bits (78),  Expect = 3.9, Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E++++ + G  ++LV  ++  EGLD+P  ++V      + G L +  S++Q  GRA
Sbjct  494  ELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRA  549


>sp|Q03AL7|UVRB_LACP3 UvrABC system protein B OS=Lacticaseibacillus 
paracasei (strain ATCC 334 / BCRC 17002 / CCUG 31169 / 
CIP 107868 / KCTC 3260 / NRRL B-441) OX=321967 GN=uvrB PE=3 
SV=1
Length=671

 Score = 34.7 bits (78),  Expect = 4.0, Method: Compositional matrix adjust.
 Identities = 15/59 (25%), Positives = 34/59 (58%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ ++I+  + G  ++L+  ++  EG+D+P  +++      + G L  E S++Q  GRA
Sbjct  490  ERTQIIRDLRLGKFDVLIGINLLREGIDVPEVSLIAILDADKEGFLRAERSLIQTIGRA  548


>sp|B3WCQ5|UVRB_LACCB UvrABC system protein B OS=Lacticaseibacillus 
casei (strain BL23) OX=543734 GN=uvrB PE=3 SV=1
Length=671

 Score = 34.7 bits (78),  Expect = 4.0, Method: Compositional matrix adjust.
 Identities = 15/59 (25%), Positives = 34/59 (58%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ ++I+  + G  ++L+  ++  EG+D+P  +++      + G L  E S++Q  GRA
Sbjct  490  ERTQIIRDLRLGKFDVLIGINLLREGIDVPEVSLIAILDADKEGFLRAERSLIQTIGRA  548


>sp|Q74K90|UVRB_LACJO UvrABC system protein B OS=Lactobacillus 
johnsonii (strain CNCM I-12250 / La1 / NCC 533) OX=257314 GN=uvrB 
PE=3 SV=1
Length=671

 Score = 34.3 bits (77),  Expect = 4.1, Method: Compositional matrix adjust.
 Identities = 21/77 (27%), Positives = 40/77 (52%), Gaps = 9/77 (12%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRARADQ  476
            E+I+  + G  ++L+  ++  EG+D+P  ++V      + G L +   +VQ  GRA  + 
Sbjct  491  EIIRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRSTRPLVQTIGRAARNS  550

Query  477  S----VYAFVATEGSRE  489
            +    +YA   T+  RE
Sbjct  551  NGKVIMYADSITDSMRE  567


>sp|A3LQW7|DBP2_PICST ATP-dependent RNA helicase DBP2 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=DBP2 PE=3 SV=1
Length=530

 Score = 34.3 bits (77),  Expect = 4.1, Method: Compositional matrix adjust.
 Identities = 29/112 (26%), Positives = 59/112 (53%), Gaps = 11/112 (10%)

Query  417  QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY---GLLTNEISMVQARGRAR  473
            Q ++  V+++F+ G   ++VAT VA  G+D+   N V+ +   G + + +  +   GR  
Sbjct  380  QSERDWVLREFKTGKSPIMVATDVAARGIDVKGINFVINFDMPGNIEDYVHRIGRTGRGG  439

Query  474  ADQSVYAFVATEGSRELKREL---INEALETLMEQAVAAVQKMDQAEYQAKI  522
            A  +  +F  T+G+ +L  +L   + EA +T+  +    +Q+ D+  + A I
Sbjct  440  ATGTAVSFF-TDGNNKLGGDLCKIMREAKQTIPPE----LQRFDRKSFGAHI  486


>sp|O76743|GLH4_CAEEL ATP-dependent RNA helicase glh-4 OS=Caenorhabditis 
elegans OX=6239 GN=glh-4 PE=1 SV=2
Length=1156

 Score = 34.7 bits (78),  Expect = 4.2, Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 53/118 (45%), Gaps = 10/118 (8%)

Query  397   DIRAQLLIGAGNSSQSTHMTQRDQQE--VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV  454
             D  A L+  AG S+ S H  Q  +Q    +  F+ G    +VA++V   GL+I   + VV
Sbjct  1016  DTLAALISSAGVSTISMHSYQNQEQRDRTLDDFRRGKYQCMVASNVCARGLNIAGLDHVV  1075

Query  455   RYGL-----LTNEISMVQARGRARADQSVYAFVATEGSRELKR---ELINEALETLME  504
              Y +         ++ +   GRA    +  AFV  E   ++      ++NEA + + E
Sbjct  1076  NYDMPDKNGFDEYVNRIGRTGRAGFTGTSTAFVDVENDTDIIPCLVSILNEAKKEVPE  1133


>sp|Q757U8|DBP10_EREGS ATP-dependent RNA helicase DBP10 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=DBP10 PE=3 SV=1
Length=960

 Score = 34.7 bits (78),  Expect = 4.3, Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR  473
            + Q  +++ +  F+ G  N+LV T VA  G+DIP    VV   L  +    V   GR AR
Sbjct  444  LDQHARRQQLHNFRCGLTNILVVTDVAARGVDIPLLANVVNMSLPASSKIFVHRVGRTAR  503

Query  474  ADQSVYAFV  482
            A    +A+ 
Sbjct  504  AGNKGWAYT  512


>sp|A7TEF4|FAL1_VANPO ATP-dependent RNA helicase FAL1 OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=FAL1 PE=3 SV=1
Length=399

 Score = 34.3 bits (77),  Expect = 4.3, Method: Compositional matrix adjust.
 Identities = 19/80 (24%), Positives = 38/80 (48%), Gaps = 3/80 (4%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG---LLTNEISMVQARGR  471
            M Q D+ +V+  F+ G   +L++T V   G+D+   ++V+ Y    ++ N I  +   GR
Sbjct  299  MKQEDRNKVMSDFRSGHSRVLISTDVWARGIDVQQVSLVINYDIPEIMENYIHRIGRSGR  358

Query  472  ARADQSVYAFVATEGSRELK  491
                     F+ +    ++K
Sbjct  359  FGRKGVAINFITSSDLSKMK  378


>sp|B8DF98|DCUP_LISMH Uroporphyrinogen decarboxylase OS=Listeria 
monocytogenes serotype 4a (strain HCC23) OX=552536 GN=hemE 
PE=3 SV=1
Length=350

 Score = 33.9 bits (76),  Expect = 4.4, Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 31/61 (51%), Gaps = 4/61 (7%)

Query  190  ANLDTWCIMSPQNCCPQ----LQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLE  245
             NLD   +++P  C  +    LQE   +P   +NL H    +   ++LKKL + IH+  E
Sbjct  285  GNLDPSTLLAPAKCLEEAERILQEGVLEPGYIFNLGHGVFPEVPPEMLKKLTNYIHERSE  344

Query  246  M  246
            +
Sbjct  345  I  345


>sp|A1CTL8|MAK5_ASPCL ATP-dependent RNA helicase mak5 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=mak5 PE=3 SV=1
Length=774

 Score = 34.3 bits (77),  Expect = 4.4, Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 4/74 (5%)

Query  413  THMTQRDQQEVIQKFQDGTLN---LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
            + M Q+ +   +++F   T N   +L+AT VA  GLDI   ++V+ Y       + V   
Sbjct  535  SSMAQKARLRSVERFSSPTANPGTILIATDVAARGLDIKGIDLVIHYHAPRTADTYVHRS  594

Query  470  GR-ARADQSVYAFV  482
            GR ARA  S  + +
Sbjct  595  GRTARAGASGKSVI  608


>sp|P10081|IF4A_YEAST ATP-dependent RNA helicase eIF4A OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 
GN=TIF1 PE=1 SV=3
Length=395

 Score = 34.3 bits (77),  Expect = 4.5, Method: Compositional matrix adjust.
 Identities = 21/101 (21%), Positives = 50/101 (50%), Gaps = 14/101 (14%)

Query  362  FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ  421
            + S +  + +IF  TR+    L   L+  +   TV            S+  + + Q+++ 
Sbjct  255  YDSISVTQAVIFCNTRRKVEELTTKLRNDKF--TV------------SAIYSDLPQQERD  300

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE  462
             ++++F+ G+  +L++T +   G+D+   ++V+ Y L  N+
Sbjct  301  TIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANK  341


>sp|A6ZQJ1|IF4A_YEAS7 ATP-dependent RNA helicase eIF4A OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=TIF1 PE=3 
SV=1
Length=395

 Score = 34.3 bits (77),  Expect = 4.5, Method: Compositional matrix adjust.
 Identities = 21/101 (21%), Positives = 50/101 (50%), Gaps = 14/101 (14%)

Query  362  FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ  421
            + S +  + +IF  TR+    L   L+  +   TV            S+  + + Q+++ 
Sbjct  255  YDSISVTQAVIFCNTRRKVEELTTKLRNDKF--TV------------SAIYSDLPQQERD  300

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE  462
             ++++F+ G+  +L++T +   G+D+   ++V+ Y L  N+
Sbjct  301  TIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANK  341


>sp|Q6FY67|MAK5_CANGA ATP-dependent RNA helicase MAK5 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=MAK5 PE=3 SV=1
Length=733

 Score = 34.3 bits (77),  Expect = 4.5, Method: Compositional matrix adjust.
 Identities = 29/91 (32%), Positives = 44/91 (48%), Gaps = 11/91 (12%)

Query  403  LIGAGNSSQSTH--MTQRDQQEVIQKFQD--------GTLNLLVATSVAEEGLDIPHCNV  452
            LI  G +S   H  MTQ+++ + ++KF+         G   +L+A+ VA  GLDI     
Sbjct  459  LINLGINSFQIHSSMTQKNRLKNLEKFEAMASKNNHLGKPTVLIASDVAARGLDIKGIKH  518

Query  453  VVRYGLLTNEISMVQARGR-ARADQSVYAFV  482
            VV Y L  +  + +   GR AR D    A +
Sbjct  519  VVHYHLPHSADTYIHRSGRTARGDNEGVAVM  549


>sp|Q0E2Q3|IF4A2_ORYSJ Putative eukaryotic initiation factor 4A-2 
OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0221300 
PE=3 SV=2
Length=416

 Score = 34.3 bits (77),  Expect = 4.5, Method: Compositional matrix adjust.
 Identities = 29/104 (28%), Positives = 45/104 (43%), Gaps = 20/104 (19%)

Query  362  FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRD  419
            F +    R IIF  TR  A SL           T  IR     G G +  + H  + QR 
Sbjct  280  FDTMEITRSIIFVNTRHHAKSL-----------TEKIR-----GKGYTVSAIHGGIHQRA  323

Query  420  QQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI  463
            + + +Q+FQ G+  +L+ T +   G+D+      + Y L T  +
Sbjct  324  RDKAVQEFQSGSSRILITTDL--RGIDVLRAPAAIFYDLPTQPV  365


>sp|Q9VUV9|U520_DROME U5 small nuclear ribonucleoprotein 200 kDa 
helicase OS=Drosophila melanogaster OX=7227 GN=Brr2 PE=2 
SV=4
Length=2142

 Score = 34.7 bits (78),  Expect = 4.6, Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 26/168 (15%)

Query  18   KNIIIWLPTGAGKTRAAAYVAKRHLE---TVDGA------KVVVLVNRVHLVTQHGEEF-  67
            +N+++  PTGAGKT  A     R +      DG       K++ +     LV +    F 
Sbjct  497  ENMLLCAPTGAGKTNVALLTMMREIGKHINEDGTINAQDFKIIYVAPMKSLVQEMVGNFG  556

Query  68   RRMLDGRWTVTTLSGDMGPRAGFGHLAR----CHDLLICTAELLQMALTSPEEEEHVELT  123
            RR+     TV+ L+GD         L R       +++CT E   +      E   V L 
Sbjct  557  RRLACYNLTVSELTGD-------HQLTREQIAATQVIVCTPEKWDIITRKGGERTFVSLV  609

Query  124  VFSLIVVDECH--HTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS  169
               L+++DE H  H  +  V   ++++ +   ++  Q   +++GL+A+
Sbjct  610  --RLVIIDEIHLLHDERGPVLEALVARTIR-NIETTQEEVRLVGLSAT  654


>sp|Q12389|DBP10_YEAST ATP-dependent RNA helicase DBP10 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 
GN=DBP10 PE=1 SV=2
Length=995

 Score = 34.3 bits (77),  Expect = 4.6, Method: Compositional matrix adjust.
 Identities = 21/56 (38%), Positives = 29/56 (52%), Gaps = 1/56 (2%)

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF  481
            F+ G  ++LV T VA  G+DIP    V+ Y L  +    V   GR ARA    +A+
Sbjct  478  FRAGLTSILVVTDVAARGVDIPMLANVINYTLPGSSKIFVHRVGRTARAGNKGWAY  533


>sp|A6ZXU0|DBP10_YEAS7 ATP-dependent RNA helicase DBP10 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=DBP10 PE=3 
SV=1
Length=995

 Score = 34.3 bits (77),  Expect = 4.6, Method: Compositional matrix adjust.
 Identities = 21/56 (38%), Positives = 29/56 (52%), Gaps = 1/56 (2%)

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF  481
            F+ G  ++LV T VA  G+DIP    V+ Y L  +    V   GR ARA    +A+
Sbjct  478  FRAGLTSILVVTDVAARGVDIPMLANVINYTLPGSSKIFVHRVGRTARAGNKGWAY  533


>sp|Q3Z9B4|UVRB_DEHM1 UvrABC system protein B OS=Dehalococcoides 
mccartyi (strain ATCC BAA-2266 / KCTC 15142 / 195) OX=243164 
GN=uvrB PE=3 SV=1
Length=668

 Score = 34.3 bits (77),  Expect = 4.7, Method: Compositional matrix adjust.
 Identities = 16/56 (29%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E+++  + G  +++V  ++  EGLD+P  ++V      + G L +E +++Q  GRA
Sbjct  484  EILRDLRLGVYDVIVGINLLREGLDLPEVSLVAILDADKEGYLRSEQALIQTMGRA  539


>sp|P9WFC7|UVRB_MYCTU UvrABC system protein B OS=Mycobacterium 
tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=uvrB PE=1 
SV=2
Length=719

 Score = 34.3 bits (77),  Expect = 4.8, Method: Compositional matrix adjust.
 Identities = 23/77 (30%), Positives = 42/77 (55%), Gaps = 9/77 (12%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRARADQ  476
            E++++ + G  ++LV  ++  EGLD+P  ++V      + G L +  S++Q  GRA  + 
Sbjct  509  ELLRQLRLGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSRSLIQTIGRAARNV  568

Query  477  S----VYAFVATEGSRE  489
            S    +YA   T+  RE
Sbjct  569  SGEVHMYADKITDSMRE  585


>sp|P9WFC6|UVRB_MYCTO UvrABC system protein B OS=Mycobacterium 
tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=uvrB PE=3 
SV=2
Length=719

 Score = 34.3 bits (77),  Expect = 4.8, Method: Compositional matrix adjust.
 Identities = 23/77 (30%), Positives = 42/77 (55%), Gaps = 9/77 (12%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRARADQ  476
            E++++ + G  ++LV  ++  EGLD+P  ++V      + G L +  S++Q  GRA  + 
Sbjct  509  ELLRQLRLGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSRSLIQTIGRAARNV  568

Query  477  S----VYAFVATEGSRE  489
            S    +YA   T+  RE
Sbjct  569  SGEVHMYADKITDSMRE  585


>sp|P67423|UVRB_MYCBO UvrABC system protein B OS=Mycobacterium 
bovis (strain ATCC BAA-935 / AF2122/97) OX=233413 GN=uvrB PE=3 
SV=2
Length=719

 Score = 34.3 bits (77),  Expect = 4.8, Method: Compositional matrix adjust.
 Identities = 23/77 (30%), Positives = 42/77 (55%), Gaps = 9/77 (12%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRARADQ  476
            E++++ + G  ++LV  ++  EGLD+P  ++V      + G L +  S++Q  GRA  + 
Sbjct  509  ELLRQLRLGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSRSLIQTIGRAARNV  568

Query  477  S----VYAFVATEGSRE  489
            S    +YA   T+  RE
Sbjct  569  SGEVHMYADKITDSMRE  585


>sp|Q3ZZK7|UVRB_DEHMC UvrABC system protein B OS=Dehalococcoides 
mccartyi (strain CBDB1) OX=255470 GN=uvrB PE=3 SV=1
Length=664

 Score = 34.3 bits (77),  Expect = 4.8, Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 42/81 (52%), Gaps = 9/81 (11%)

Query  400  AQLLIGAGNSSQSTHMTQRDQQEVIQKFQD---GTLNLLVATSVAEEGLDIPHCNVVV--  454
            A  L+  G  +   H ++ D  E I+  +D   G  +++V  ++  EGLD+P  ++V   
Sbjct  460  ADYLVEMGVKTHYLH-SEVDTLERIEILRDLRLGVYDVIVGINLLREGLDLPEVSLVAIL  518

Query  455  ---RYGLLTNEISMVQARGRA  472
               + G L +E +++Q  GRA
Sbjct  519  DADKEGYLRSEQALIQTMGRA  539


>sp|Q4WWD3|DHH1_ASPFU ATP-dependent RNA helicase dhh1 OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 
/ Af293) OX=330879 GN=dhh1 PE=3 SV=1
Length=507

 Score = 34.3 bits (77),  Expect = 4.8, Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 51/119 (43%), Gaps = 15/119 (13%)

Query  369  RGII----FTRTRQSAH---SLLLWLQQQQGL------QTVDIRAQLLIGAGNSSQSTH-  414
            RGI     F   +Q  H   +L   LQ  Q +        V++ A+ +   G S   +H 
Sbjct  257  RGITQYYAFVEEKQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHA  316

Query  415  -MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA  472
             M Q+ +  V   F++G    LV + +   G+DI   NVV+ +    N  + +   GR+
Sbjct  317  RMLQQHRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRS  375


>sp|A5E2I8|SPB4_LODEL ATP-dependent rRNA helicase SPB4 OS=Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=SPB4 PE=3 SV=1
Length=637

 Score = 34.3 bits (77),  Expect = 4.8, Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 17/144 (12%)

Query  346  PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQ--QQGLQTVDIRAQLL  403
            PE+    ML+ +   QF      + I++  T  S       L +  +     +DI A L 
Sbjct  263  PEHKLTTMLQMLRDNQFK-----KAIVYFPTCTSVKHFYQMLSKLCKSSANDIDISALLF  317

Query  404  IGAGNSSQSTHMTQRDQQEVIQKFQDGTLN----LLVATSVAEEGLDIPHCNVVVRYGLL  459
                  S    +T + +   ++KF +G       +L+AT VA  G+DIP  ++V++    
Sbjct  318  F-----SLHGQLTTKSRLNTLEKFTEGNDESKKYILMATDVAARGIDIPDVDLVIQIDPP  372

Query  460  TNEISMVQARGR-ARADQSVYAFV  482
            T+    +   GR  RA++   A V
Sbjct  373  TDPSVFLHRCGRTGRANKVGRAIV  396


>sp|Q0CBE1|DHH1_ASPTN ATP-dependent RNA helicase dhh1 OS=Aspergillus 
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=dhh1 
PE=3 SV=1
Length=509

 Score = 34.3 bits (77),  Expect = 4.8, Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 51/119 (43%), Gaps = 15/119 (13%)

Query  369  RGII----FTRTRQSAH---SLLLWLQQQQGL------QTVDIRAQLLIGAGNSSQSTH-  414
            RGI     F   +Q  H   +L   LQ  Q +        V++ A+ +   G S   +H 
Sbjct  257  RGITQYYAFVEEKQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHA  316

Query  415  -MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA  472
             M Q+ +  V   F++G    LV + +   G+DI   NVV+ +    N  + +   GR+
Sbjct  317  RMLQQHRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRS  375


>sp|Q6CSZ7|DHH1_KLULA ATP-dependent RNA helicase DHH1 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 
1267 / NRRL Y-1140 / WM37) OX=284590 GN=DHH1 PE=3 SV=1
Length=514

 Score = 34.3 bits (77),  Expect = 4.9, Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 2/79 (3%)

Query  396  VDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV  453
            V++ A+ +   G S   +H  M Q ++ +V  +F+ G +  LV + +   G+DI   NVV
Sbjct  286  VELLAKKITELGFSCYYSHARMKQSERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVV  345

Query  454  VRYGLLTNEISMVQARGRA  472
            + +       + +   GR+
Sbjct  346  INFDFPKTAETYLHRIGRS  364


>sp|Q109G2|RH12_ORYSJ DEAD-box ATP-dependent RNA helicase 12 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os10g0503700 PE=2 
SV=2
Length=521

 Score = 34.3 bits (77),  Expect = 5.0, Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 45/111 (41%), Gaps = 11/111 (10%)

Query  373  FTRTRQSAH---SLLLWLQQQQGL------QTVDIRAQLLIGAGNSSQSTH--MTQRDQQ  421
            F   RQ  H   +L   LQ  Q +        V++ A+ +   G S    H  M Q  + 
Sbjct  365  FVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRN  424

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA  472
             V   F++G    LV T +   G+DI   NVV+ +       + +   GR+
Sbjct  425  RVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKTSETYLHRVGRS  475


>sp|Q9FNQ1|DEXHE_ARATH DExH-box ATP-dependent RNA helicase DExH14 
OS=Arabidopsis thaliana OX=3702 GN=BRR2C PE=2 SV=1
Length=2157

 Score = 34.3 bits (77),  Expect = 5.0, Method: Compositional matrix adjust.
 Identities = 43/173 (25%), Positives = 76/173 (44%), Gaps = 37/173 (21%)

Query  18   KNIIIWLPTGAGKTRAAA----YVAKRHLETVDGA------KVVVLVNRVHLVTQHGEEF  67
            +NI++  PTGAGKT  A     +  K+H    DG       K+V +     L  +    F
Sbjct  524  ENILVCAPTGAGKTNIAMISVLHEIKQHFR--DGYLHKNEFKIVYVAPMKALAAEVTSAF  581

Query  68   -RRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELT---  123
             RR+      V  L+GDM              L     E  QM +T+PE+ + +      
Sbjct  582  SRRLAPLNMVVKELTGDM-------------QLTKTELEETQMIVTTPEKWDVITRKSSD  628

Query  124  -----VFSLIVVDECHHTHKD--TVYNVIMSQYLELKLQRAQPLPQVLGLTAS  169
                 +  L+++DE H  + D   V   ++++ L  +++  Q + +++GL+A+
Sbjct  629  MSMSMLVKLLIIDEVHLLNDDRGAVIEALVARTLR-QVESTQTMIRIVGLSAT  680


>sp|A1D8G1|DHH1_NEOFI ATP-dependent RNA helicase dhh1 OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / 
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dhh1 
PE=3 SV=1
Length=507

 Score = 33.9 bits (76),  Expect = 5.0, Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 51/119 (43%), Gaps = 15/119 (13%)

Query  369  RGII----FTRTRQSAH---SLLLWLQQQQGL------QTVDIRAQLLIGAGNSSQSTH-  414
            RGI     F   +Q  H   +L   LQ  Q +        V++ A+ +   G S   +H 
Sbjct  257  RGITQYYAFVEEKQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHA  316

Query  415  -MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA  472
             M Q+ +  V   F++G    LV + +   G+DI   NVV+ +    N  + +   GR+
Sbjct  317  RMLQQHRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRS  375


>sp|Q6CDS6|ROK1_YARLI ATP-dependent RNA helicase ROK1 OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=ROK1 PE=3 
SV=1
Length=547

 Score = 34.3 bits (77),  Expect = 5.0, Method: Compositional matrix adjust.
 Identities = 18/57 (32%), Positives = 30/57 (53%), Gaps = 0/57 (0%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
            MT   +  VI +F++G + +L+ T V   G+D    N+V+ Y +  +  S V   GR
Sbjct  398  MTAAKRASVIDRFRNGEVWVLICTDVLARGIDFRGINLVINYDVPQSAQSYVHRIGR  454


>sp|P34668|YO12_CAEEL Putative ATP-dependent RNA helicase ZK686.2 
OS=Caenorhabditis elegans OX=6239 GN=ZK686.2 PE=3 SV=2
Length=593

 Score = 33.9 bits (76),  Expect = 5.2, Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 57/127 (45%), Gaps = 10/127 (8%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYA  480
            ++++KF      +L+ + V   G D+   + V+ Y L  ++   V   GR  RA Q  Y 
Sbjct  440  KMLEKFNKNENRVLICSDVLARGTDLNKVDCVINYNLPADDKLFVHRAGRTGRAGQDGY-  498

Query  481  FVATEGSRELKR------ELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRA  534
             V + G +E KR      ++ N   +T+ EQ    + + D   Y   +  L +A ++ +A
Sbjct  499  -VISVGDKESKRLFVKMLKVTNLWGDTVEEQMEEYIFEKDMDRYSKALESL-KATVSSQA  556

Query  535  AQAAQRE  541
                 R+
Sbjct  557  KTGGSRQ  563


>sp|A2QY39|DHH1_ASPNC ATP-dependent RNA helicase dhh1 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=dhh1 PE=3 SV=1
Length=505

 Score = 33.9 bits (76),  Expect = 5.2, Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 51/119 (43%), Gaps = 15/119 (13%)

Query  369  RGII----FTRTRQSAH---SLLLWLQQQQGL------QTVDIRAQLLIGAGNSSQSTH-  414
            RGI     F   +Q  H   +L   LQ  Q +        V++ A+ +   G S   +H 
Sbjct  257  RGITQYYAFVEEKQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHA  316

Query  415  -MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA  472
             M Q+ +  V   F++G    LV + +   G+DI   NVV+ +    N  + +   GR+
Sbjct  317  RMLQQHRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRS  375


>sp|Q6CXT4|IF4A_KLULA ATP-dependent RNA helicase eIF4A OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / 
NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=TIF1 PE=3 SV=1
Length=396

 Score = 33.9 bits (76),  Expect = 5.2, Method: Compositional matrix adjust.
 Identities = 21/101 (21%), Positives = 51/101 (50%), Gaps = 14/101 (14%)

Query  362  FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ  421
            + S +  + +IF  TR+    L   L++     TV            S+  + + Q+++ 
Sbjct  256  YDSISVTQAVIFCNTRRKVEELTERLRENNF--TV------------SAIYSDLQQQERD  301

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE  462
             ++++F+ G+  +L++T +   G+D+   ++V+ Y L +N+
Sbjct  302  TIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNK  342


>sp|Q2GQ93|DHH1_CHAGB ATP-dependent RNA helicase DHH1 OS=Chaetomium 
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 
6347 / NRRL 1970) OX=306901 GN=DHH1 PE=3 SV=1
Length=512

 Score = 33.9 bits (76),  Expect = 5.2, Method: Compositional matrix adjust.
 Identities = 21/79 (27%), Positives = 38/79 (48%), Gaps = 2/79 (3%)

Query  396  VDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV  453
            V++ A+ +   G S   +H  M Q+ +  V   F++G    LV + +   G+DI   NVV
Sbjct  261  VELLAKKITELGYSCFYSHAKMAQQARNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVV  320

Query  454  VRYGLLTNEISMVQARGRA  472
            + +    N  + +   GR+
Sbjct  321  INFDFPKNAETYLHRIGRS  339


>sp|A1CJ18|DHH1_ASPCL ATP-dependent RNA helicase dhh1 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=dhh1 PE=3 SV=1
Length=503

 Score = 33.9 bits (76),  Expect = 5.3, Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 51/119 (43%), Gaps = 15/119 (13%)

Query  369  RGII----FTRTRQSAH---SLLLWLQQQQGL------QTVDIRAQLLIGAGNSSQSTH-  414
            RGI     F   +Q  H   +L   LQ  Q +        V++ A+ +   G S   +H 
Sbjct  257  RGITQYYAFVEEKQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHA  316

Query  415  -MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA  472
             M Q+ +  V   F++G    LV + +   G+DI   NVV+ +    N  + +   GR+
Sbjct  317  RMLQQHRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRS  375


>sp|Q0U7S9|DHH1_PHANO ATP-dependent RNA helicase DHH1 OS=Phaeosphaeria 
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) 
OX=321614 GN=DHH1 PE=3 SV=1
Length=522

 Score = 33.9 bits (76),  Expect = 5.4, Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 51/119 (43%), Gaps = 15/119 (13%)

Query  369  RGII----FTRTRQSAH---SLLLWLQQQQGL------QTVDIRAQLLIGAGNSSQSTH-  414
            RGI     F   +Q  H   +L   LQ  Q +        V++ A+ +   G S   +H 
Sbjct  259  RGITQYYAFVEEKQKVHCLNTLFNKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHA  318

Query  415  -MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA  472
             M Q ++  V   F++G    LV + +   G+DI   NVV+ +    N  + +   GR+
Sbjct  319  RMLQHNRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRS  377


>sp|Q1E306|ROK1_COCIM ATP-dependent RNA helicase ROK1 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=ROK1 PE=3 SV=1
Length=730

 Score = 33.9 bits (76),  Expect = 5.5, Method: Compositional matrix adjust.
 Identities = 31/111 (28%), Positives = 51/111 (46%), Gaps = 21/111 (19%)

Query  368  PRGIIFTRTRQSA---HSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ----STHMTQRDQ  420
            P  +IFT+T   A   HS L++          DI A+    AG SS+     + ++   +
Sbjct  501  PPFLIFTQTIARAIALHSELMY----------DIPAE----AGGSSRIAVLHSELSDSKR  546

Query  421  QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
             +V+  F+ G + +L+ T +   G+D    N VV Y +  +  S V   GR
Sbjct  547  SDVMAGFRKGEIWVLITTDLLARGVDFRGINGVVNYDIPNSSASYVHRVGR  597


>sp|Q6FL17|SUB2_CANGA ATP-dependent RNA helicase SUB2 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=SUB2 PE=3 SV=1
Length=439

 Score = 33.9 bits (76),  Expect = 5.5, Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 3/73 (4%)

Query  403  LIGAGNSSQST---HMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL  459
            L+ A N    T   HM Q ++    + F+D    + V+T V   G+DI   N+ + Y LL
Sbjct  318  LLNASNFPAITVHGHMKQEERIARYKAFKDFEKRICVSTDVFGRGIDIERINLAINYDLL  377

Query  460  TNEISMVQARGRA  472
                  +   GRA
Sbjct  378  NEADQYLHRVGRA  390


>sp|Q6BJX6|DHH1_DEBHA ATP-dependent RNA helicase DHH1 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / 
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DHH1 PE=3 SV=2
Length=516

 Score = 33.9 bits (76),  Expect = 5.6, Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 52/119 (44%), Gaps = 15/119 (13%)

Query  369  RGI----IFTRTRQSAH---SLLLWLQQQQGL------QTVDIRAQLLIGAGNSSQSTH-  414
            RGI     F   +Q  H   +L   LQ  Q +        V++ A+ +   G S   +H 
Sbjct  240  RGISQFYAFVEEKQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITELGYSCYYSHA  299

Query  415  -MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA  472
             M Q  + +V  +F+ G + +LV + +   G+DI   NVV+ +       + +   GR+
Sbjct  300  KMPQHARNKVFHEFRQGKVRVLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRS  358


>sp|Q9SYP1|DEXHC_ARATH DExH-box ATP-dependent RNA helicase DExH12 
OS=Arabidopsis thaliana OX=3702 GN=BRR2A PE=1 SV=1
Length=2171

 Score = 34.3 bits (77),  Expect = 5.6, Method: Compositional matrix adjust.
 Identities = 41/167 (25%), Positives = 76/167 (46%), Gaps = 18/167 (11%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRHLE---TVDGA------KVVVLVNRVHLVTQ-HG  64
             + +NI++  PTGAGKT  A     + LE     DG       K+V +     LV +  G
Sbjct  518  FKAENILLCAPTGAGKTNVAMLTILQQLEMNRNTDGTYNHGDYKIVYVAPMKALVAEVVG  577

Query  65   EEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
                R+ D    V  LSGD   ++  G       +++ T E   +      +  + +L  
Sbjct  578  NLSNRLKDYGVIVRELSGD---QSLTGREIEETQIIVTTPEKWDIITRKSGDRTYTQLV-  633

Query  125  FSLIVVDECH--HTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS  169
              L+++DE H  H ++  V   I+++ L  +++  +   +++GL+A+
Sbjct  634  -RLLIIDEIHLLHDNRGPVLESIVARTLR-QIETTKENIRLVGLSAT  678


>sp|A5DBI5|DBP5_PICGU ATP-dependent RNA helicase DBP5 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DBP5 PE=3 
SV=1
Length=482

 Score = 33.9 bits (76),  Expect = 5.6, Method: Compositional matrix adjust.
 Identities = 20/89 (22%), Positives = 42/89 (47%), Gaps = 14/89 (16%)

Query  370  GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD  429
             IIF +T+ +A+ L   ++ +              G   S   + +   ++ ++I  F++
Sbjct  333  SIIFVKTKATANYLYAKMKSE--------------GHACSILHSDLDNSERDKLIDDFRE  378

Query  430  GTLNLLVATSVAEEGLDIPHCNVVVRYGL  458
            G   +L+ T+V   G+DI   ++VV Y +
Sbjct  379  GRSKVLITTNVLARGIDIASVSMVVNYDI  407


>sp|A6R9U4|MAK5_AJECN ATP-dependent RNA helicase MAK5 OS=Ajellomyces 
capsulatus (strain NAm1 / WU24) OX=2059318 GN=MAK5 PE=3 
SV=1
Length=772

 Score = 33.9 bits (76),  Expect = 5.8, Method: Compositional matrix adjust.
 Identities = 22/69 (32%), Positives = 36/69 (52%), Gaps = 4/69 (6%)

Query  413  THMTQRDQQEVIQKFQDGTLN---LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
            + M Q+ +   +++F   T +   +LVAT VA  GLDI   ++++ Y +     + V   
Sbjct  522  SSMAQKARLRSVERFSSPTADPSSILVATDVAARGLDIKGIDLIIHYHVPRTADTYVHRS  581

Query  470  GR-ARADQS  477
            GR ARA  S
Sbjct  582  GRTARASAS  590


>sp|Q2HEB0|PRP28_CHAGB Pre-mRNA-splicing ATP-dependent RNA helicase 
PRP28 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 
/ DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=PRP28 
PE=3 SV=1
Length=705

 Score = 33.9 bits (76),  Expect = 5.8, Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 3/75 (4%)

Query  416  TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA  474
            TQ  ++  +   ++G  N+LVAT +A  G+D+   ++VV + + ++  +     GR  RA
Sbjct  577  TQEQREASLASVRNGQANILVATDLAGRGIDVADVSLVVNFNMPSSIEAYTHRIGRTGRA  636

Query  475  DQSVYA--FVATEGS  487
             +S  A  F+  E S
Sbjct  637  GKSGVAITFLGNEDS  651


>sp|Q0E2Z7|RH41_ORYSJ DEAD-box ATP-dependent RNA helicase 41 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os02g0201900 PE=2 
SV=2
Length=536

 Score = 33.9 bits (76),  Expect = 6.0, Method: Compositional matrix adjust.
 Identities = 29/130 (22%), Positives = 53/130 (41%), Gaps = 15/130 (12%)

Query  368  PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF  427
            P  ++F  +R  A  L   +    GL+ V I                 T  +++E +++F
Sbjct  384  PPAVVFVSSRIGADLLSEAITVATGLKVVSIHGD-------------KTMNERRESLRRF  430

Query  428  QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRAR--ADQSVYAFVATE  485
              G ++++V T V   G+D+     V+ + +  +    V   GRA     + +      E
Sbjct  431  LTGEVSVVVCTGVLGRGMDLLKVRQVILFDMPNSIDEYVHQVGRASRMGVEGMAIVFVNE  490

Query  486  GSRELKRELI  495
              R L REL+
Sbjct  491  EDRNLFRELV  500


>sp|Q5L4S6|UVRB_CHLAB UvrABC system protein B OS=Chlamydia abortus 
(strain DSM 27085 / S26/3) OX=218497 GN=uvrB PE=3 SV=1
Length=656

 Score = 33.9 bits (76),  Expect = 6.1, Method: Compositional matrix adjust.
 Identities = 28/126 (22%), Positives = 62/126 (49%), Gaps = 21/126 (17%)

Query  352  EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ  411
            ++LE+I +R   S +  + ++ + T++ A  +  +L +      +DI A  L     +++
Sbjct  429  DLLEEIRKRL--SKSQEKILVISITKKLAEDIAAFLSE------LDIAAAYLHSGIETAE  480

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMV  466
             T         ++   + G +++L+  ++  EGLD+P  ++V      + G L +  S++
Sbjct  481  RTR--------ILSDLRLGNIDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSTSSLI  532

Query  467  QARGRA  472
            Q  GRA
Sbjct  533  QFCGRA  538


>sp|Q7L2E3|DHX30_HUMAN ATP-dependent RNA helicase DHX30 OS=Homo 
sapiens OX=9606 GN=DHX30 PE=1 SV=1
Length=1194

 Score = 33.9 bits (76),  Expect = 6.1, Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 76/183 (42%), Gaps = 29/183 (16%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ-----STHMTQRDQQEVIQ  425
            ++    R     +L +L   Q ++ V  R Q  +G   S        +++   DQ+ + Q
Sbjct  659  VLHIDARGEPGGILCFLPGWQEIKGVQQRLQEALGMHESKYLILPVHSNIPMMDQKAIFQ  718

Query  426  KFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL-------LTNEIS-----------MVQ  467
            +   G   +++AT++AE  + I     VV  GL       L  ++S           ++Q
Sbjct  719  QPPVGVRKIVLATNIAETSITINDIVHVVDSGLHKEERYDLKTKVSCLETVWVSRANVIQ  778

Query  468  ARGRARADQSVYAFVATEGSRELKR------ELINEALETLMEQAVAAVQKMDQAEYQAK  521
             RGRA   QS +A+     SR  K       E++   LE L+ QA   + +    E+ +K
Sbjct  779  RRGRAGRCQSGFAYHLFPRSRLEKMVPFQVPEILRTPLENLVLQAKIHMPEKTAVEFLSK  838

Query  522  IRD  524
              D
Sbjct  839  AVD  841


>sp|Q5ZHZ0|DX39B_CHICK Spliceosome RNA helicase DDX39B OS=Gallus 
gallus OX=9031 GN=DDX39B PE=2 SV=1
Length=428

 Score = 33.9 bits (76),  Expect = 6.1, Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 2/75 (3%)

Query  400  AQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG  457
            AQLL+     + + H  M Q ++    Q+F+D    +LVAT++   G+DI   N+   Y 
Sbjct  304  AQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYD  363

Query  458  LLTNEISMVQARGRA  472
            +  +  + +    RA
Sbjct  364  MPEDSDTYLHRVARA  378


>sp|Q63413|DX39B_RAT Spliceosome RNA helicase Ddx39b OS=Rattus 
norvegicus OX=10116 GN=Ddx39b PE=2 SV=3
Length=428

 Score = 33.5 bits (75),  Expect = 6.3, Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 2/75 (3%)

Query  400  AQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG  457
            AQLL+     + + H  M Q ++    Q+F+D    +LVAT++   G+DI   N+   Y 
Sbjct  304  AQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYD  363

Query  458  LLTNEISMVQARGRA  472
            +  +  + +    RA
Sbjct  364  MPEDSDTYLHRVARA  378


>sp|Q9Z1N5|DX39B_MOUSE Spliceosome RNA helicase Ddx39b OS=Mus 
musculus OX=10090 GN=Ddx39b PE=1 SV=1
Length=428

 Score = 33.5 bits (75),  Expect = 6.3, Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 2/75 (3%)

Query  400  AQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG  457
            AQLL+     + + H  M Q ++    Q+F+D    +LVAT++   G+DI   N+   Y 
Sbjct  304  AQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYD  363

Query  458  LLTNEISMVQARGRA  472
            +  +  + +    RA
Sbjct  364  MPEDSDTYLHRVARA  378


>sp|A3LZT3|DBP10_PICST ATP-dependent RNA helicase DBP10 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=DBP10 PE=3 SV=2
Length=931

 Score = 33.9 bits (76),  Expect = 6.4, Method: Compositional matrix adjust.
 Identities = 35/127 (28%), Positives = 56/127 (44%), Gaps = 13/127 (10%)

Query  365  SNSPRGIIFTRTR-------QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT-  416
            S S R   F + R        S HS ++++  +  ++ +     LL  AG      + T 
Sbjct  371  SGSKRKYKFKKERLPSANVLPSPHSTIVFVPTKHHVEYI---TTLLRDAGYLVSYIYGTL  427

Query  417  -QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA  474
             Q  ++  + +F+ G   +LV T VA  G+DIP    VV Y L  +    +   GR ARA
Sbjct  428  DQHARKNQLYQFRLGMTTVLVVTDVAARGIDIPVLANVVNYTLPGSSKIFIHRVGRTARA  487

Query  475  DQSVYAF  481
                +A+
Sbjct  488  GNKGWAY  494


>sp|Q3T147|DX39B_BOVIN Spliceosome RNA helicase DDX39B OS=Bos 
taurus OX=9913 GN=DDX39B PE=2 SV=1
Length=428

 Score = 33.5 bits (75),  Expect = 6.4, Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 2/75 (3%)

Query  400  AQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG  457
            AQLL+     + + H  M Q ++    Q+F+D    +LVAT++   G+DI   N+   Y 
Sbjct  304  AQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYD  363

Query  458  LLTNEISMVQARGRA  472
            +  +  + +    RA
Sbjct  364  MPEDSDTYLHRVARA  378


>sp|Q09747|DBP5_SCHPO ATP-dependent RNA helicase dbp5 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=dbp5 
PE=1 SV=1
Length=503

 Score = 33.9 bits (76),  Expect = 6.4, Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 25/42 (60%), Gaps = 2/42 (5%)

Query  417  QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL  458
            QRD   ++  F+ GT  +LV T+V   G+D+   N+VV Y +
Sbjct  390  QRDA--IMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDM  429


>sp|Q6MS38|UVRB_MYCMS UvrABC system protein B OS=Mycoplasma mycoides 
subsp. mycoides SC (strain CCUG 32753 / NCTC 10114 / 
PG1) OX=272632 GN=uvrB PE=3 SV=1
Length=671

 Score = 33.9 bits (76),  Expect = 6.5, Method: Compositional matrix adjust.
 Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 5/59 (8%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            ++ E++   + G  +++V  ++  EGLD+P  ++V      + G L N  S++Q  GR 
Sbjct  493  ERSEILNDLRKGVYDVVVGVNLLREGLDLPEVSLVCILDADKQGFLRNYRSLIQTIGRV  551


>sp|O80902|CIPKM_ARATH CBL-interacting serine/threonine-protein 
kinase 22 OS=Arabidopsis thaliana OX=3702 GN=CIPK22 PE=1 SV=1
Length=431

 Score = 33.5 bits (75),  Expect = 6.5, Method: Compositional matrix adjust.
 Identities = 31/94 (33%), Positives = 48/94 (51%), Gaps = 12/94 (13%)

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEE-GLDIPH--CNVVVRYGLLTNEISM  465
            S +ST +  R  +EV ++     LNL +A        L+ PH   NVVV+   LTNE+ M
Sbjct  340  SDESTAVIMRKVEEVAKQ-----LNLRIAKKKERAIKLEGPHGVANVVVKVRRLTNELVM  394

Query  466  VQARGRARADQSVYAFVATEGSRELKRELINEAL  499
            V+ + + R    V+A    +  R+  R LIN+ +
Sbjct  395  VEMKNKQRDVGLVWA----DALRQKLRRLINQPV  424


>sp|A6R3R5|IF4A_AJECN ATP-dependent RNA helicase eIF4A OS=Ajellomyces 
capsulatus (strain NAm1 / WU24) OX=2059318 GN=TIF1 PE=3 
SV=1
Length=385

 Score = 33.5 bits (75),  Expect = 6.5, Method: Compositional matrix adjust.
 Identities = 14/53 (26%), Positives = 31/53 (58%), Gaps = 0/53 (0%)

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN  461
            S+    M Q+ +  ++++F+ G+  +L+AT +   G+D+   ++V+ Y L  N
Sbjct  292  SAMHGDMEQQQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPAN  344


>sp|Q5RE47|DX39B_PONAB Spliceosome RNA helicase DDX39B OS=Pongo 
abelii OX=9601 GN=DDX39B PE=2 SV=1
Length=428

 Score = 33.5 bits (75),  Expect = 6.6, Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 2/75 (3%)

Query  400  AQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG  457
            AQLL+     + + H  M Q ++    Q+F+D    +LVAT++   G+DI   N+   Y 
Sbjct  304  AQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYD  363

Query  458  LLTNEISMVQARGRA  472
            +  +  + +    RA
Sbjct  364  MPEDSDTYLHRVARA  378


>sp|Q29024|DX39B_PIG Spliceosome RNA helicase DDX39B OS=Sus scrofa 
OX=9823 GN=DDX39B PE=3 SV=2
Length=428

 Score = 33.5 bits (75),  Expect = 6.6, Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 2/75 (3%)

Query  400  AQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG  457
            AQLL+     + + H  M Q ++    Q+F+D    +LVAT++   G+DI   N+   Y 
Sbjct  304  AQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYD  363

Query  458  LLTNEISMVQARGRA  472
            +  +  + +    RA
Sbjct  364  MPEDSDTYLHRVARA  378


>sp|P60024|DX39B_PANTR Spliceosome RNA helicase DDX39B OS=Pan 
troglodytes OX=9598 GN=DDX39B PE=3 SV=1
Length=428

 Score = 33.5 bits (75),  Expect = 6.6, Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 2/75 (3%)

Query  400  AQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG  457
            AQLL+     + + H  M Q ++    Q+F+D    +LVAT++   G+DI   N+   Y 
Sbjct  304  AQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYD  363

Query  458  LLTNEISMVQARGRA  472
            +  +  + +    RA
Sbjct  364  MPEDSDTYLHRVARA  378


>sp|Q5TM17|DX39B_MACMU Spliceosome RNA helicase DDX39B OS=Macaca 
mulatta OX=9544 GN=DDX39B PE=3 SV=1
Length=428

 Score = 33.5 bits (75),  Expect = 6.6, Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 2/75 (3%)

Query  400  AQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG  457
            AQLL+     + + H  M Q ++    Q+F+D    +LVAT++   G+DI   N+   Y 
Sbjct  304  AQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYD  363

Query  458  LLTNEISMVQARGRA  472
            +  +  + +    RA
Sbjct  364  MPEDSDTYLHRVARA  378


>sp|Q13838|DX39B_HUMAN Spliceosome RNA helicase DDX39B OS=Homo 
sapiens OX=9606 GN=DDX39B PE=1 SV=1
Length=428

 Score = 33.5 bits (75),  Expect = 6.6, Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 2/75 (3%)

Query  400  AQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG  457
            AQLL+     + + H  M Q ++    Q+F+D    +LVAT++   G+DI   N+   Y 
Sbjct  304  AQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYD  363

Query  458  LLTNEISMVQARGRA  472
            +  +  + +    RA
Sbjct  364  MPEDSDTYLHRVARA  378


>sp|Q7N8V1|RAPA_PHOLL RNA polymerase-associated protein RapA OS=Photorhabdus 
laumondii subsp. laumondii (strain DSM 15139 
/ CIP 105565 / TT01) OX=243265 GN=rapA PE=3 SV=1
Length=970

 Score = 33.9 bits (76),  Expect = 6.6, Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 11/147 (7%)

Query  26   TGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMG  85
             G GKT  A  +  + L      +V+V+V    L  Q   E  R  + R+ +   S  + 
Sbjct  179  VGLGKTIEAGMIIHQQLLAGRAERVLVIVPD-SLQHQWLVEMLRRFNLRFALFDDSRYIE  237

Query  86   PRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHT--HKDTVYN  143
             R    +      L++C+   L  A  + +  EH+    + L+VVDE HH    +D    
Sbjct  238  ARHDSDNPFETEQLVLCS---LDFARRNKQRFEHMLEASWDLMVVDEAHHLVWSEDAP--  292

Query  144  VIMSQYLELKLQRAQPLPQVLGLTASP  170
               S+  ++  Q A+ +P VL LTA+P
Sbjct  293  ---SREYQVVEQLAEQIPSVLLLTATP  316


>sp|Q2NKY8|DHX30_BOVIN ATP-dependent RNA helicase DHX30 OS=Bos 
taurus OX=9913 GN=DHX30 PE=2 SV=1
Length=1220

 Score = 33.9 bits (76),  Expect = 6.6, Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 76/183 (42%), Gaps = 29/183 (16%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ-----STHMTQRDQQEVIQ  425
            ++    R     +L +L   Q ++ V  R Q  +G   S        +++   DQ+ + Q
Sbjct  685  VLHIDARGEPGGILCFLPGWQEIKGVQQRLQEALGMHESKYLILPVHSNIPMMDQKAIFQ  744

Query  426  KFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL-------LTNEIS-----------MVQ  467
            +   G   +++AT++AE  + I     VV  GL       L  ++S           ++Q
Sbjct  745  QPPIGVRKIVLATNIAETSITINDIVHVVDSGLHKEERYDLKTKVSCLETVWVSRANVIQ  804

Query  468  ARGRARADQSVYAFVATEGSRELKR------ELINEALETLMEQAVAAVQKMDQAEYQAK  521
             RGRA   QS +A+     SR  K       E++   LE L+ QA   + +    E+ +K
Sbjct  805  RRGRAGRCQSGFAYHLFPRSRLEKMAPFQVPEILRTPLENLVLQAKIHMPEKTAVEFLSK  864

Query  522  IRD  524
              D
Sbjct  865  AVD  867


>sp|Q5WR10|DX39B_CANLF Spliceosome RNA helicase DDX39B OS=Canis 
lupus familiaris OX=9615 GN=DDX39B PE=3 SV=1
Length=428

 Score = 33.5 bits (75),  Expect = 6.7, Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 2/75 (3%)

Query  400  AQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG  457
            AQLL+     + + H  M Q ++    Q+F+D    +LVAT++   G+DI   N+   Y 
Sbjct  304  AQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYD  363

Query  458  LLTNEISMVQARGRA  472
            +  +  + +    RA
Sbjct  364  MPEDSDTYLHRVARA  378


>sp|Q5AJD0|DBP5_CANAL ATP-dependent RNA helicase DBP5 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DBP5 
PE=3 SV=2
Length=540

 Score = 33.5 bits (75),  Expect = 6.7, Method: Compositional matrix adjust.
 Identities = 14/44 (32%), Positives = 27/44 (61%), Gaps = 0/44 (0%)

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE  462
            D+  +I  F++G   +L+ T+V   G+DI   ++VV Y + T++
Sbjct  426  DRDRLIDDFREGRSKVLITTNVLARGIDIASVSMVVNYDMPTDK  469


>sp|A4R715|DHH1_PYRO7 ATP-dependent RNA helicase DHH1 OS=Pyricularia 
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 
GN=DHH1 PE=3 SV=2
Length=535

 Score = 33.5 bits (75),  Expect = 6.8, Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 51/119 (43%), Gaps = 15/119 (13%)

Query  369  RGII----FTRTRQSAH---SLLLWLQQQQGL------QTVDIRAQLLIGAGNSSQSTH-  414
            RGI     F   +Q  H   +L   LQ  Q +        V++ A+ +   G S   +H 
Sbjct  257  RGITQYYAFVEEKQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHA  316

Query  415  -MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA  472
             M Q+ +  V   F++G    LV + +   G+DI   NVV+ +    N  + +   GR+
Sbjct  317  KMQQQARNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRS  375


>sp|A5DIX5|ROK1_PICGU ATP-dependent RNA helicase ROK1 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=ROK1 PE=3 
SV=2
Length=537

 Score = 33.5 bits (75),  Expect = 6.8, Method: Compositional matrix adjust.
 Identities = 16/56 (29%), Positives = 30/56 (54%), Gaps = 0/56 (0%)

Query  416  TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
            T + ++E I++F++G   +L+ T V   G+D    N+V+ Y +     + V   GR
Sbjct  387  TPKQREEAIRRFKNGDAWVLITTDVLARGVDFKGVNLVINYDVPQTSQAYVHRIGR  442


 Score = 33.5 bits (75),  Expect = 8.5, Method: Compositional matrix adjust.
 Identities = 39/140 (28%), Positives = 61/140 (44%), Gaps = 13/140 (9%)

Query  2    ELRSYQWEVIMPALEGKNIIIWLPTGAGKT------RAAAYVAKRHLETVDGAKVVVLVN  55
            E  + Q E I  + EG+++I   PTG+GKT       A A ++    +   G + VV+  
Sbjct  128  EPTAIQCEAIPASAEGRDLIACAPTGSGKTLAYLIPMAQALISSPKTKNY-GIRGVVIAP  186

Query  56   RVHLVTQHGEEFRRMLDG-RWTVTTLSGDMG-PRAGFGHLARCHDLLICTAELLQMALTS  113
               L  Q  +    M  G    VT LS  +    +     A   D+LICT     + L  
Sbjct  187  TNELAIQIYQTLAPMCRGSNLNVTLLSKQVASKISSSIISANKFDVLICTP----LRLID  242

Query  114  PEEEEHVELTVFSLIVVDEC  133
              ++E V+L+    +V+DE 
Sbjct  243  LVKKEQVDLSKVEHLVIDEA  262


>sp|Q18212|DX39B_CAEEL Spliceosome RNA helicase DDX39B homolog 
OS=Caenorhabditis elegans OX=6239 GN=hel-1 PE=1 SV=1
Length=425

 Score = 33.5 bits (75),  Expect = 6.8, Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 34/74 (46%), Gaps = 2/74 (3%)

Query  401  QLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL  458
            QLL      S + H  M Q ++    Q F+D    +LVAT +   G+DI   N+V  Y +
Sbjct  301  QLLTEQNFPSIAIHRQMAQEERLSRYQAFKDFQKRILVATDLFGRGMDIERVNIVFNYDM  360

Query  459  LTNEISMVQARGRA  472
              +  S +    RA
Sbjct  361  PEDSDSYLHRVARA  374


>sp|Q0DBS1|RH51_ORYSJ Putative DEAD-box ATP-dependent RNA helicase 
51 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0535100 
PE=3 SV=2
Length=590

 Score = 33.5 bits (75),  Expect = 6.8, Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 60/157 (38%), Gaps = 41/157 (26%)

Query  320  ILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQS  379
            ++ +ERR L L+   K  L+       E  K+ +        FSS NS +          
Sbjct  320  VIPSERRFLVLYAFLKKALS-------EKTKVMVF-------FSSCNSVK----------  355

Query  380  AHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATS  439
             H+ LL   Q   ++  DI  QL              Q  +     KF      +L+ T+
Sbjct  356  FHAQLLNFIQ---IECYDIHGQL-------------KQHQRTSTFFKFHKAEHGILLCTN  399

Query  440  VAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARAD  475
            VA  GLDIP  + +V+Y         +   GR AR D
Sbjct  400  VAARGLDIPDVDYIVQYDPPDETKDYIHRVGRTARGD  436


>sp|Q89RY1|AROC_BRADU Chorismate synthase OS=Bradyrhizobium diazoefficiens 
(strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 
14792 / USDA 110) OX=224911 GN=aroC PE=3 SV=1
Length=362

 Score = 33.5 bits (75),  Expect = 6.9, Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 6/68 (9%)

Query  601  FKDWKPGGVISCRNCGEVWGLQMIYKSVKLPVLKVRSMLLETPQGRIQAKKW-----SRV  655
             +D++ GG  S R          I + V LP +KVR  L++    +I  +KW     +R 
Sbjct  123  LRDYRGGGRSSARETATRVAAGAIARKV-LPDVKVRGALVQMGPHKIDREKWDWDEVARN  181

Query  656  PFSVPDFD  663
            PF  PD D
Sbjct  182  PFFCPDKD  189


>sp|Q6BME5|SUB2_DEBHA ATP-dependent RNA helicase SUB2 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / 
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=SUB2 PE=3 SV=2
Length=435

 Score = 33.5 bits (75),  Expect = 6.9, Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 60/143 (42%), Gaps = 22/143 (15%)

Query  336  NELAHLATHGPENPKLEMLEKILQRQFS----SSNSPRGIIFTRTRQSAHSLLLWLQQQQ  391
            ++ A L  HG +   +++ EK   R+ S    S    + IIF R+ Q A+ L        
Sbjct  260  DDEAKLTLHGLQQYYIKLDEKEKNRKLSDLLDSLEFNQVIIFVRSTQRANEL--------  311

Query  392  GLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPH  449
                     +LL  +   S + H  + Q ++ E  + F++    + V+T V   G+DI  
Sbjct  312  --------NKLLCSSNFPSIAVHSGLPQEERIERYKSFKEFNKRICVSTDVFGRGIDIER  363

Query  450  CNVVVRYGLLTNEISMVQARGRA  472
             N+ + Y L       +   GRA
Sbjct  364  INLAINYDLPNEADQYLHRVGRA  386


>sp|P0CQ70|IF4A_CRYNJ ATP-dependent RNA helicase eIF4A OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=TIF1 PE=3 SV=1
Length=401

 Score = 33.5 bits (75),  Expect = 7.0, Method: Compositional matrix adjust.
 Identities = 20/97 (21%), Positives = 45/97 (46%), Gaps = 14/97 (14%)

Query  362  FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ  421
            + +    + +IF  TR+       WL QQ   +   +          S+    M Q +++
Sbjct  262  YETVTITQAVIFCSTRRKVD----WLTQQLHDRQFTV----------SAMHGDMKQEERE  307

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL  458
             ++++F+ G+  +L+ T +   G+D+   ++V+ Y L
Sbjct  308  VIMKEFRSGSSRVLITTDLLARGIDVQQVSLVINYDL  344


>sp|P0CQ71|IF4A_CRYNB ATP-dependent RNA helicase eIF4A OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=TIF1 PE=3 SV=1
Length=401

 Score = 33.5 bits (75),  Expect = 7.0, Method: Compositional matrix adjust.
 Identities = 20/97 (21%), Positives = 45/97 (46%), Gaps = 14/97 (14%)

Query  362  FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ  421
            + +    + +IF  TR+       WL QQ   +   +          S+    M Q +++
Sbjct  262  YETVTITQAVIFCSTRRKVD----WLTQQLHDRQFTV----------SAMHGDMKQEERE  307

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL  458
             ++++F+ G+  +L+ T +   G+D+   ++V+ Y L
Sbjct  308  VIMKEFRSGSSRVLITTDLLARGIDVQQVSLVINYDL  344


>sp|Q75AE1|ROK1_EREGS ATP-dependent RNA helicase ROK1 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=ROK1 PE=3 SV=1
Length=569

 Score = 33.5 bits (75),  Expect = 7.0, Method: Compositional matrix adjust.
 Identities = 14/43 (33%), Positives = 26/43 (60%), Gaps = 0/43 (0%)

Query  416  TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL  458
            TQ  ++++I++F+ G L  L+ T V   G+D    N+V+ Y +
Sbjct  409  TQVQREKIIERFKSGDLWCLICTDVLARGIDFKGINLVINYDV  451


>sp|A5DIP0|DHH1_PICGU ATP-dependent RNA helicase DHH1 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DHH1 PE=3 
SV=1
Length=547

 Score = 33.5 bits (75),  Expect = 7.1, Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 40/79 (51%), Gaps = 2/79 (3%)

Query  396  VDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV  453
            V++ A+ +   G S   +H  M Q+ + +V  +F+ G++  LV + +   G+DI   NVV
Sbjct  279  VELLAKKITELGYSCYYSHAKMPQQARNKVFHEFRQGSVRTLVCSDLLTRGIDIQAVNVV  338

Query  454  VRYGLLTNEISMVQARGRA  472
            + +       + +   GR+
Sbjct  339  INFDFPKTAETYLHRIGRS  357


>sp|Q0UU86|IF4A_PHANO ATP-dependent RNA helicase eIF4A OS=Phaeosphaeria 
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) 
OX=321614 GN=TIF1 PE=3 SV=1
Length=396

 Score = 33.5 bits (75),  Expect = 7.3, Method: Compositional matrix adjust.
 Identities = 27/115 (23%), Positives = 54/115 (47%), Gaps = 18/115 (16%)

Query  347  ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA  406
            E+ KL+ L  +    + +    + +IF  TR+       WL  +   +   + A      
Sbjct  246  EDWKLDTLSDL----YETVTITQAVIFCNTRRKVD----WLTDKLTARDFTVSAM----H  293

Query  407  GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN  461
            G+  Q+    QRD   ++++F+ G+  +L+AT +   G+D+   ++V+ Y L  N
Sbjct  294  GDMDQA----QRDV--IMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPAN  342


>sp|A5DWJ1|FAL1_LODEL ATP-dependent RNA helicase FAL1 OS=Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=FAL1 PE=3 SV=1
Length=399

 Score = 33.5 bits (75),  Expect = 7.3, Method: Compositional matrix adjust.
 Identities = 14/58 (24%), Positives = 32/58 (55%), Gaps = 0/58 (0%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA  472
            M Q ++  ++  F+ G   +L++T V   G+D+   ++V+ Y L  ++ + +   GR+
Sbjct  299  MKQEERDAIMNDFRSGNSRVLISTDVWARGIDVQQISLVINYDLPLDKENYIHRIGRS  356


>sp|Q4HW67|DHH1_GIBZE ATP-dependent RNA helicase DHH1 OS=Gibberella 
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / 
NRRL 31084 / PH-1) OX=229533 GN=DHH1 PE=3 SV=2
Length=522

 Score = 33.5 bits (75),  Expect = 7.3, Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 15/119 (13%)

Query  369  RGII----FTRTRQSAH---SLLLWLQQQQGL------QTVDIRAQLLIGAGNSSQSTH-  414
            RGI     F   +Q  H   +L   LQ  Q +        V++ A+ +   G S   +H 
Sbjct  259  RGITQYYAFVEEKQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHA  318

Query  415  -MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA  472
             M Q  +  V   F++G    LV + +   G+DI   NVV+ +    N  + +   GR+
Sbjct  319  KMQQHARNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRS  377


>sp|Q2U5A2|DHH1_ASPOR ATP-dependent RNA helicase dhh1 OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=dhh1 
PE=3 SV=1
Length=511

 Score = 33.5 bits (75),  Expect = 7.4, Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 51/119 (43%), Gaps = 15/119 (13%)

Query  369  RGII----FTRTRQSAH---SLLLWLQQQQGL------QTVDIRAQLLIGAGNSSQSTH-  414
            RGI     F   +Q  H   +L   LQ  Q +        V++ A+ +   G S   +H 
Sbjct  257  RGITQYYAFVEEKQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHA  316

Query  415  -MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA  472
             M Q+ +  V   F++G    LV + +   G+DI   NVV+ +    N  + +   GR+
Sbjct  317  RMLQQHRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRS  375


>sp|Q2HCV7|ROK1_CHAGB ATP-dependent RNA helicase ROK1 OS=Chaetomium 
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 
6347 / NRRL 1970) OX=306901 GN=ROK1 PE=3 SV=1
Length=667

 Score = 33.5 bits (75),  Expect = 7.5, Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 40/79 (51%), Gaps = 4/79 (5%)

Query  397  DIRAQLLIGAGNSSQS----THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNV  452
            +++  + + AG S++     + M    + +++ +F+ G + +LV T V   G+D    N 
Sbjct  458  ELKYDIPLEAGGSARVAVLHSSMADSARSKIMARFRAGEVWVLVTTDVLARGVDFAGVNG  517

Query  453  VVRYGLLTNEISMVQARGR  471
            VV Y + T+  + V   GR
Sbjct  518  VVNYDVPTSAAAYVHRAGR  536


>sp|P35683|IF4A1_ORYSJ Eukaryotic initiation factor 4A-1 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os06g0701100 PE=2 SV=2
Length=414

 Score = 33.5 bits (75),  Expect = 7.7, Method: Compositional matrix adjust.
 Identities = 23/104 (22%), Positives = 48/104 (46%), Gaps = 18/104 (17%)

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQ  428
            +IF  TR+       WL  +            + G  ++  +TH  M Q  +  ++++F+
Sbjct  284  VIFVNTRRKVD----WLTDK------------MRGRDHTVSATHGDMDQNTRDIIMREFR  327

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA  472
             G+  +L+ T +   G+D+   ++V+ Y L T   + +   GR+
Sbjct  328  SGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRS  371


>sp|O48534|DEXHD_ARATH DExH-box ATP-dependent RNA helicase DExH13 
OS=Arabidopsis thaliana OX=3702 GN=BRR2B PE=2 SV=1
Length=2172

 Score = 33.9 bits (76),  Expect = 7.8, Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 30/51 (59%), Gaps = 3/51 (6%)

Query  19    NIIIWLPTGAGKTRAAAY-VAKRHLETVDGAKVVVLVNRVHLVTQHGEEFR  68
             N+++  PTG+GKT  A + + + HLE  D A  VV +  +  + +  E+FR
Sbjct  1369  NVVVAAPTGSGKTICAEFAILRNHLEGPDSAMRVVYIAPLEAIAK--EQFR  1417


>sp|P0CQ96|SUB2_CRYNJ ATP-dependent RNA helicase SUB2 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=SUB2 PE=3 SV=1
Length=442

 Score = 33.5 bits (75),  Expect = 8.0, Method: Compositional matrix adjust.
 Identities = 20/65 (31%), Positives = 31/65 (48%), Gaps = 1/65 (2%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG-AKVVVLVNRVHLVTQHGE  65
            Q E I  A+ G +++    +G GKT      A + +E VDG   +++L +   L  Q   
Sbjct  86   QQECIPQAILGTDVLCQAKSGMGKTAVFVLAALQQIEPVDGEVSIIILCHTRELAYQIKN  145

Query  66   EFRRM  70
            EF R 
Sbjct  146  EFTRF  150


>sp|P0CQ97|SUB2_CRYNB ATP-dependent RNA helicase SUB2 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=SUB2 PE=3 SV=1
Length=442

 Score = 33.5 bits (75),  Expect = 8.0, Method: Compositional matrix adjust.
 Identities = 20/65 (31%), Positives = 31/65 (48%), Gaps = 1/65 (2%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG-AKVVVLVNRVHLVTQHGE  65
            Q E I  A+ G +++    +G GKT      A + +E VDG   +++L +   L  Q   
Sbjct  86   QQECIPQAILGTDVLCQAKSGMGKTAVFVLAALQQIEPVDGEVSIIILCHTRELAYQIKN  145

Query  66   EFRRM  70
            EF R 
Sbjct  146  EFTRF  150


>sp|A3GH91|DBP5_PICST ATP-dependent RNA helicase DBP5 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=DBP5 PE=3 SV=2
Length=500

 Score = 33.5 bits (75),  Expect = 8.0, Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 10/64 (16%)

Query  416  TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARAD  475
            ++RD+  +I  F++G   +L+ T+V   G+DI   ++VV Y L T++           AD
Sbjct  385  SERDR--LIDDFREGRSKVLITTNVLARGIDIASVSMVVNYDLPTDK--------DGNAD  434

Query  476  QSVY  479
             S Y
Sbjct  435  PSTY  438


>sp|Q975X3|CDC61_SULTO ORC1-type DNA replication protein 1 OS=Sulfurisphaera 
tokodaii (strain DSM 16993 / JCM 10545 / NBRC 
100140 / 7) OX=273063 GN=cdc6-1 PE=3 SV=1
Length=398

 Score = 33.1 bits (74),  Expect = 8.0, Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 63/148 (43%), Gaps = 31/148 (21%)

Query  9    EVIMPALEGK---NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            E++ P + G+   NI I+  TG GKT    +V K+  E +  + + V +N      Q   
Sbjct  45   EILSPLMRGEKPNNIFIYGLTGTGKTAVTKFVVKKLHEKISNSFIYVYIN----TRQTDT  100

Query  66   EFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF  125
             +R + D       L  ++G +  F          I TAEL +  +     ++ +EL   
Sbjct  101  PYRILAD-------LLENLGSKVPFTG--------ISTAELYRRFI-----KKVLELKPI  140

Query  126  SLIVVDECHHTHK----DTVYNVIMSQY  149
             +IV+DE     K    D +Y +  + Y
Sbjct  141  LVIVLDEIDALVKKHGDDILYRLTRANY  168


>sp|A3GFI4|IF4A_PICST ATP-dependent RNA helicase eIF4A OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=TIF1 PE=3 SV=1
Length=397

 Score = 33.1 bits (74),  Expect = 8.1, Method: Compositional matrix adjust.
 Identities = 12/48 (25%), Positives = 31/48 (65%), Gaps = 0/48 (0%)

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE  462
            + Q ++  ++++F+ G+  +L+AT +   G+D+   ++V+ Y L +N+
Sbjct  296  LPQAERDTIMKEFRSGSSRILIATDLLARGIDVQQVSLVINYDLPSNK  343


>sp|Q1DQ20|IF4A_COCIM ATP-dependent RNA helicase eIF4A OS=Coccidioides 
immitis (strain RS) OX=246410 GN=TIF1 PE=3 SV=1
Length=398

 Score = 33.1 bits (74),  Expect = 8.1, Method: Compositional matrix adjust.
 Identities = 14/53 (26%), Positives = 30/53 (57%), Gaps = 0/53 (0%)

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN  461
            S+    M Q  +  ++++F+ G+  +L+AT +   G+D+   ++V+ Y L  N
Sbjct  292  SAMHGEMEQNQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPAN  344


>sp|F4ZCI3|NNHA_MYCS0 2-nitroimidazole nitrohydrolase OS=Mycobacterium 
sp. (strain JS330) OX=1004011 GN=nnhA PE=1 SV=1
Length=379

 Score = 33.1 bits (74),  Expect = 8.2, Method: Compositional matrix adjust.
 Identities = 24/94 (26%), Positives = 39/94 (41%), Gaps = 3/94 (3%)

Query  421  QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYA  480
             E + K+   TLN+    ++ E  ++   CN++    L+T   +    RG    DQ V A
Sbjct  172  SEYLAKWAWNTLNIPPLVAITEGAMEPGACNMIADEVLVTCLSASYDQRG---TDQLVAA  228

Query  481  FVATEGSRELKRELINEALETLMEQAVAAVQKMD  514
               T G+ E     +  A+E    +A  A    D
Sbjct  229  ISKTSGTEEFHNLQLRPAVEGFFNKATGACAHPD  262


>sp|Q0CXD0|IF4A_ASPTN ATP-dependent RNA helicase eIF4A OS=Aspergillus 
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=tif1 
PE=3 SV=2
Length=396

 Score = 33.1 bits (74),  Expect = 8.2, Method: Compositional matrix adjust.
 Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 14/100 (14%)

Query  362  FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ  421
            + +    + +IF  TR+       WL  +   +   + A      G+  QS    QRD  
Sbjct  257  YETVTITQAVIFCNTRRKVD----WLTDKLTARDFTVSAM----HGDMEQS----QRDI-  303

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN  461
             ++++F+ G+  +L+AT +   G+D+   ++V+ Y L  N
Sbjct  304  -IMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPAN  342


>sp|Q7XMK8|RH6_ORYSJ DEAD-box ATP-dependent RNA helicase 6 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os04g0533000 PE=2 SV=1
Length=498

 Score = 33.5 bits (75),  Expect = 8.3, Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 11/111 (10%)

Query  373  FTRTRQSAH---SLLLWLQQQQGL------QTVDIRAQLLIGAGNSSQSTH--MTQRDQQ  421
            F   RQ  H   +L   LQ  Q +        V++ A+ +   G S    H  M Q  + 
Sbjct  342  FVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRN  401

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA  472
             V   F++G    LV T +   G+DI   NVV+ +    +  + +   GR+
Sbjct  402  RVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKSAETYLHRVGRS  452


>sp|Q8SQM5|IF4A_ENCCU ATP-dependent RNA helicase eIF4A OS=Encephalitozoon 
cuniculi (strain GB-M1) OX=284813 GN=TIF1 PE=1 SV=1
Length=425

 Score = 33.1 bits (74),  Expect = 8.4, Method: Compositional matrix adjust.
 Identities = 24/105 (23%), Positives = 50/105 (48%), Gaps = 18/105 (17%)

Query  349  PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN  408
            PKL  L  I ++Q       + I+F  +++ A  +  WL + +         +L+     
Sbjct  276  PKLVTLYDIFRKQ----RLGQSIVFINSKEDARIVYDWLIRHEW------ECELI-----  320

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV  453
               S  +TQ +++  + +F+ GT   L+++ +   G+DI + +VV
Sbjct  321  ---SAELTQAERERTLNRFRGGTGRCLISSGLLSRGIDIQNLSVV  362


>sp|A1CJT5|IF4A_ASPCL ATP-dependent RNA helicase eIF4A OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / 
NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=tif1 PE=3 SV=1
Length=398

 Score = 33.1 bits (74),  Expect = 8.4, Method: Compositional matrix adjust.
 Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 14/100 (14%)

Query  362  FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ  421
            + +    + +IF  TR+       WL  +   +   + A      G+  QS    QRD  
Sbjct  259  YETVTITQAVIFCNTRRKVD----WLTDKLTARDFTVSAM----HGDMEQS----QRDV-  305

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN  461
             ++++F+ G+  +L+AT +   G+D+   ++V+ Y L  N
Sbjct  306  -IMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPAN  344


>sp|Q0UWC8|PRP28_PHANO Pre-mRNA-splicing ATP-dependent RNA helicase 
PRP28 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 
/ FGSC 10173) OX=321614 GN=PRP28 PE=3 SV=1
Length=746

 Score = 33.5 bits (75),  Expect = 8.5, Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 46/89 (52%), Gaps = 3/89 (3%)

Query  397  DIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV  454
            D  A+ +   G SS + H   TQ  ++  + + ++  +++LVAT +A  G+DI   ++VV
Sbjct  609  DAIARDIKNMGFSSVTLHGSKTQEQREAALAQLREHRVDVLVATDLAGRGIDITDVSLVV  668

Query  455  RYGLLTNEISMVQARGR-ARADQSVYAFV  482
             + + T+  S     GR  RA +S  A  
Sbjct  669  NFNMATSIESYTHRIGRTGRAGKSGVAIT  697


>sp|Q1RKN3|TLH2_SCHPO ATP-dependent DNA helicase tlh2 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=tlh2 
PE=2 SV=1
Length=1919

 Score = 33.5 bits (75),  Expect = 8.7, Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 13/132 (10%)

Query  354   LEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQST  413
             L  +++R        R IIF RT++    +   L Q            + I  G+ S   
Sbjct  1402  LRTLMKRTKVFEGDGRAIIFCRTKKDVEYIHRRLHQSDLFA----HTHVTIYTGDVSDE-  1456

Query  414   HMTQRDQQEVIQKFQD--GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
                  ++Q     F++  G   +++AT     G++     +VV YGL  + +  VQ  GR
Sbjct  1457  -----ERQMNFDAFRNANGKTRIMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQETGR  1511

Query  472   ARADQSVYAFVA  483
             A  D   YA  A
Sbjct  1512  AGRDGK-YAIAA  1522


>sp|Q6H7S2|RH8_ORYSJ DEAD-box ATP-dependent RNA helicase 8 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os02g0641800 PE=2 SV=2
Length=508

 Score = 33.1 bits (74),  Expect = 8.7, Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 45/111 (41%), Gaps = 11/111 (10%)

Query  373  FTRTRQSAH---SLLLWLQQQQGL------QTVDIRAQLLIGAGNSSQSTH--MTQRDQQ  421
            F   RQ  H   +L   LQ  Q +        V++ A+ +   G S    H  M Q  + 
Sbjct  352  FVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRN  411

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA  472
             V   F++G    LV T +   G+DI   NVV+ +       + +   GR+
Sbjct  412  RVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKTAETYLHRVGRS  462


>sp|P0CT33|TLH1_SCHPO ATP-dependent DNA helicase tlh1 (Fragment) 
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 
GN=tlh1 PE=3 SV=1
Length=1887

 Score = 33.5 bits (75),  Expect = 8.7, Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 54/132 (41%), Gaps = 13/132 (10%)

Query  354   LEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQST  413
             L  +++R        R IIF RT++    +   L Q      +     + I  G+ S   
Sbjct  1402  LRTLMKRTKVFEGDGRAIIFCRTKKDVEYIHRRLHQSD----LFAHTHVTIYTGDVSDE-  1456

Query  414   HMTQRDQQEVIQKFQD--GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
                  ++Q     F++  G   +++AT     G++     +VV YGL  + +  VQ  GR
Sbjct  1457  -----ERQMNFDAFRNANGKTRIMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQETGR  1511

Query  472   ARADQSVYAFVA  483
             A  D   YA  A
Sbjct  1512  AGRDGK-YAIAA  1522


>sp|Q4IBS2|MAK5_GIBZE ATP-dependent RNA helicase MAK5 OS=Gibberella 
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / 
NRRL 31084 / PH-1) OX=229533 GN=MAK5 PE=3 SV=2
Length=781

 Score = 33.5 bits (75),  Expect = 8.8, Method: Compositional matrix adjust.
 Identities = 19/71 (27%), Positives = 37/71 (52%), Gaps = 1/71 (1%)

Query  413  THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-  471
            + M Q+ +   +++F     ++L+AT VA  GLDI   + V+ Y +  +  + +   GR 
Sbjct  538  SQMAQKARHRSLERFTASRNSILIATDVAARGLDIKEVDQVLHYHVPRSADTYIHRSGRT  597

Query  472  ARADQSVYAFV  482
            AR + S  + +
Sbjct  598  ARGESSGISVI  608


>sp|Q91VR5|DDX1_MOUSE ATP-dependent RNA helicase DDX1 OS=Mus musculus 
OX=10090 GN=Ddx1 PE=1 SV=1
Length=740

 Score = 33.5 bits (75),  Expect = 8.9, Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 56/122 (46%), Gaps = 12/122 (10%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQR--DQQEVIQK  426
            + IIF RT+    +L  +  QQ G    D +         S    H  ++  ++++ +++
Sbjct  508  QAIIFCRTKIDCDNLEQYFMQQGG--GPDKKGHQF-----SCVCLHGDRKPHERKQNLER  560

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYA--FVA  483
            F+ G +  L+ T VA  G+DI     V+   L   + + V   GR  RA++   A   VA
Sbjct  561  FKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620

Query  484  TE  485
            TE
Sbjct  621  TE  622


>sp|A5DUB2|MAK5_LODEL ATP-dependent RNA helicase MAK5 OS=Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=MAK5 PE=3 SV=1
Length=855

 Score = 33.5 bits (75),  Expect = 8.9, Method: Compositional matrix adjust.
 Identities = 22/67 (33%), Positives = 36/67 (54%), Gaps = 5/67 (7%)

Query  413  THMTQRDQQEVIQKFQDGT----LNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
            + M Q+ +   +++F+D +      +LVA+ VA  GLDIP+ + V  Y L  +    +  
Sbjct  556  SSMIQKQRLRSLERFKDASEKNQTAVLVASDVAARGLDIPNIDHVAHYHLPRSADVYIHR  615

Query  469  RGR-ARA  474
             GR ARA
Sbjct  616  SGRTARA  622


>sp|B8DJT9|UVRB_NITV9 UvrABC system protein B OS=Nitratidesulfovibrio 
vulgaris (strain DSM 19637 / Miyazaki F) OX=883 GN=uvrB 
PE=3 SV=1
Length=680

 Score = 33.5 bits (75),  Expect = 9.0, Method: Compositional matrix adjust.
 Identities = 18/55 (33%), Positives = 30/55 (55%), Gaps = 5/55 (9%)

Query  423  VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            +IQ  +    ++LV  ++  EGLDIP  ++V      + G L +  S++Q  GRA
Sbjct  489  IIQALRRKEFDVLVGINLLREGLDIPEVSLVSILDADKEGFLRSAGSLIQTFGRA  543


>sp|Q818H2|CSHB_BACCR DEAD-box ATP-dependent RNA helicase CshB 
OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 
/ JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711) 
OX=226900 GN=cshB PE=2 SV=1
Length=436

 Score = 33.1 bits (74),  Expect = 9.0, Method: Compositional matrix adjust.
 Identities = 34/137 (25%), Positives = 63/137 (46%), Gaps = 22/137 (16%)

Query  370  GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD  429
             ++FT T++ A  +   L ++ GL+   I   L             + RD+++++++ +D
Sbjct  249  AVVFTNTKKMADQVADGLMER-GLKVGRIHGDL-------------SPRDRKKMMKQIRD  294

Query  430  GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSR  488
                 +VAT +A  G+DI   + V+ Y   ++    V    R ARA  S  A    + + 
Sbjct  295  LEFQYIVATDLAARGIDIQGISHVINYQPPSDLDFFVHRVARTARAGHSGIAVTIYDPAN  354

Query  489  ELKRELINEALETLMEQ  505
            E       EAL++L +Q
Sbjct  355  E-------EALDSLEKQ  364


>sp|Q03099|YMN3_YEAST Y' element ATP-dependent helicase YML133C 
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 
GN=YML133C PE=2 SV=1
Length=1374

 Score = 33.5 bits (75),  Expect = 9.2, Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 25/45 (56%), Gaps = 0/45 (0%)

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRAR  473
            DG++ +L+ T +  EG+DI    +V+      N I ++Q  GR R
Sbjct  668  DGSMRVLIGTKLVTEGIDIKQLMMVIMLDNRLNIIELIQGVGRLR  712


>sp|Q99208|YL066_YEAST Y' element ATP-dependent helicase YLL066C 
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 
OX=559292 GN=YLL066C PE=2 SV=2
Length=1374

 Score = 33.5 bits (75),  Expect = 9.2, Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 25/45 (56%), Gaps = 0/45 (0%)

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRAR  473
            DG++ +L+ T +  EG+DI    +V+      N I ++Q  GR R
Sbjct  668  DGSMRVLIGTKLVTEGIDIKQLMMVIMLDNRLNIIELIQGVGRLR  712


>sp|Q6BY27|DBP2_DEBHA ATP-dependent RNA helicase DBP2 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / 
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DBP2 PE=3 SV=1
Length=536

 Score = 33.1 bits (74),  Expect = 9.3, Method: Compositional matrix adjust.
 Identities = 26/113 (23%), Positives = 58/113 (51%), Gaps = 11/113 (10%)

Query  417  QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY---GLLTNEISMVQARGRAR  473
            Q ++  V+++F+ G   ++VAT VA  G+D+   + V+     G + + +  +   GRA 
Sbjct  388  QGERDWVLKEFKTGKSPIMVATDVAARGIDVKGISYVINLDMPGNIEDYVHRIGRTGRAG  447

Query  474  ADQSVYAFVATEGSRELKREL---INEALETLMEQAVAAVQKMDQAEYQAKIR  523
            +  +  +F  T+ + +L  +L   + EA +T+  +    + + D+  + + IR
Sbjct  448  STGTAVSFF-TDNNSKLGGDLCKIMREANQTIPPE----LMRFDRRSFGSHIR  495


>sp|A6RY31|DHH1_BOTFB ATP-dependent RNA helicase dhh1 OS=Botryotinia 
fuckeliana (strain B05.10) OX=332648 GN=dhh1 PE=3 SV=1
Length=538

 Score = 33.1 bits (74),  Expect = 9.3, Method: Compositional matrix adjust.
 Identities = 21/79 (27%), Positives = 38/79 (48%), Gaps = 2/79 (3%)

Query  396  VDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV  453
            V++ A+ +   G S   +H  M Q ++  V   F++G    LV + +   G+DI   NVV
Sbjct  297  VELLAKKITELGYSCFYSHARMIQANRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVV  356

Query  454  VRYGLLTNEISMVQARGRA  472
            + +    N  + +   GR+
Sbjct  357  INFDFPKNAETYLHRIGRS  375


>sp|Q6NHI3|UVRB_CORDI UvrABC system protein B OS=Corynebacterium 
diphtheriae (strain ATCC 700971 / NCTC 13129 / Biotype gravis) 
OX=257309 GN=uvrB PE=3 SV=1
Length=681

 Score = 33.1 bits (74),  Expect = 9.6, Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 33/56 (59%), Gaps = 5/56 (9%)

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA  472
            E++++ + G  ++LV  ++  EGLD+P  ++V      + G L +  S++Q  GRA
Sbjct  492  ELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTKSLIQTIGRA  547


>sp|Q641Y8|DDX1_RAT ATP-dependent RNA helicase DDX1 OS=Rattus 
norvegicus OX=10116 GN=Ddx1 PE=1 SV=1
Length=740

 Score = 33.1 bits (74),  Expect = 9.7, Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 56/122 (46%), Gaps = 12/122 (10%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQR--DQQEVIQK  426
            + IIF RT+    +L  +  QQ G    D +         S    H  ++  ++++ +++
Sbjct  508  QAIIFCRTKIDCDNLEQYFMQQGG--GPDKKGHQF-----SCVCLHGDRKPHERKQNLER  560

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYA--FVA  483
            F+ G +  L+ T VA  G+DI     V+   L   + + V   GR  RA++   A   VA
Sbjct  561  FKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620

Query  484  TE  485
            TE
Sbjct  621  TE  622


>sp|Q07888|YL067_YEAST Y' element ATP-dependent helicase YLL067C 
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 
OX=559292 GN=YLL067C PE=2 SV=2
Length=1374

 Score = 33.5 bits (75),  Expect = 9.8, Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 25/45 (56%), Gaps = 0/45 (0%)

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRAR  473
            DG++ +L+ T +  EG+DI    +V+      N I ++Q  GR R
Sbjct  668  DGSMRVLIGTKLVTEGIDIKQLMMVIMLDNRLNIIELIQGVGRLR  712


>sp|O13559|YRF14_YEAST Y' element ATP-dependent helicase protein 
1 copy 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 
/ S288c) OX=559292 GN=YRF1-4 PE=2 SV=1
Length=1382

 Score = 33.5 bits (75),  Expect = 9.8, Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 25/45 (56%), Gaps = 0/45 (0%)

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRAR  473
            DG++ +L+ T +  EG+DI    +V+      N I ++Q  GR R
Sbjct  676  DGSMRVLIGTKLVTEGIDIKQLMMVIMLDNRLNIIELIQGVGRLR  720


>sp|P43538|YFG6_YEAST Y' element ATP-dependent helicase YFL066C 
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 
GN=YFL066C PE=2 SV=1
Length=392

 Score = 33.1 bits (74),  Expect = 9.8, Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 26/51 (51%), Gaps = 0/51 (0%)

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVY  479
            DG++ +L+ T +  EG+DI    +V+      N I ++Q  GR R     Y
Sbjct  291  DGSMQVLIGTKLVTEGIDIKQLMMVIMLDNRLNIIELIQGVGRLRDGGLCY  341


>sp|Q66HG7|DDX59_RAT Probable ATP-dependent RNA helicase DDX59 
OS=Rattus norvegicus OX=10116 GN=Ddx59 PE=2 SV=1
Length=589

 Score = 33.1 bits (74),  Expect = 10.0, Method: Compositional matrix adjust.
 Identities = 21/109 (19%), Positives = 52/109 (48%), Gaps = 3/109 (3%)

Query  383  LLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAE  442
            +L+++  + G   +    Q + G  ++S  +  +Q +++E+++   +G   ++V+T +  
Sbjct  417  VLVFVDCKLGADLLSEAVQKITGLSSTSIHSEKSQVERREILKGLLEGDYEVVVSTGILG  476

Query  443  EGLDIPHCNVVVRYGL---LTNEISMVQARGRARADQSVYAFVATEGSR  488
             GLD+ +  +VV + +   L   +  V   GR   + +   F+     R
Sbjct  477  RGLDLVNVKLVVNFDMPSSLDEYVHQVGRVGRLGQNGTAITFINNNSKR  525


>sp|A7TT88|ROK1_VANPO ATP-dependent RNA helicase ROK1 OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=ROK1 PE=3 SV=1
Length=570

 Score = 33.1 bits (74),  Expect = 10.0, Method: Compositional matrix adjust.
 Identities = 14/43 (33%), Positives = 25/43 (58%), Gaps = 0/43 (0%)

Query  416  TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL  458
            TQ  + ++I++F+ G L  L+ T V   G+D    N+V+ Y +
Sbjct  416  TQVQRNKIIERFKSGDLWCLITTDVLARGVDFKGVNLVINYDV  458



Lambda      K        H        a         alpha
   0.321    0.133    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 75046754048
Results from round 2


Query= sp|Q96C10|DHX58_HUMAN ATP-dependent RNA helicase DHX58 OS=Homo
sapiens OX=9606 GN=DHX58 PE=1 SV=1

Length=678
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value
Sequences used in model and found again:

sp|Q96C10|DHX58_HUMAN ATP-dependent RNA helicase DHX58 OS=Homo sa...  894     0.0   
sp|Q99J87|DHX58_MOUSE ATP-dependent RNA helicase DHX58 OS=Mus mus...  832     0.0   
sp|Q9BYX4|IFIH1_HUMAN Interferon-induced helicase C domain-contai...  659     0.0   
sp|Q8R5F7|IFIH1_MOUSE Interferon-induced helicase C domain-contai...  655     0.0   
sp|O95786|RIGI_HUMAN Antiviral innate immune response receptor RI...  612     0.0   
sp|Q6Q899|RIGI_MOUSE Antiviral innate immune response receptor RI...  595     0.0   
sp|Q9GLV6|RIGI_PIG Antiviral innate immune response receptor RIG-...  583     0.0   
sp|Q4WA22|DCL2_ASPFU Dicer-like protein 2 OS=Aspergillus fumigatu...  419     4e-130
sp|A1D9Z6|DCL2_NEOFI Dicer-like protein 2 OS=Neosartorya fischeri...  419     6e-130
sp|A1DE13|DCL1_NEOFI Dicer-like protein 1 OS=Neosartorya fischeri...  405     7e-124
sp|Q4WVE3|DCL1_ASPFU Dicer-like protein 1 OS=Aspergillus fumigatu...  401     1e-122
sp|A1CBC9|DCL1_ASPCL Dicer-like protein 1 OS=Aspergillus clavatus...  399     1e-121
sp|A2RAF3|DCL1_ASPNC Dicer-like protein 1 OS=Aspergillus niger (s...  397     5e-121
sp|Q2U6C4|DCL1_ASPOR Dicer-like protein 1 OS=Aspergillus oryzae (...  395     3e-120
sp|Q1DKI1|DCL1_COCIM Dicer-like protein 1 OS=Coccidioides immitis...  392     3e-119
sp|A1C9M6|DCL2_ASPCL Dicer-like protein 2 OS=Aspergillus clavatus...  389     1e-118
sp|Q0CW42|DCL1_ASPTN Dicer-like protein 1 OS=Aspergillus terreus ...  386     6e-117
sp|Q0CEI2|DCL2_ASPTN Dicer-like protein 2 OS=Aspergillus terreus ...  380     2e-115
sp|A1D4V5|MPH1_NEOFI ATP-dependent DNA helicase mph1 OS=Neosartor...  373     9e-115
sp|P0C5H7|DCL2_EMENI Dicer-like protein 2 OS=Emericella nidulans ...  378     1e-114
sp|Q4WKB5|MPH1_ASPFU ATP-dependent DNA helicase mph1 OS=Aspergill...  372     3e-114
sp|B0XMV6|MPH1_ASPFC ATP-dependent DNA helicase mph1 OS=Aspergill...  372     3e-114
sp|Q2URJ5|MPH1_ASPOR ATP-dependent DNA helicase mph1 OS=Aspergill...  372     4e-114
sp|A1CS00|MPH1_ASPCL ATP-dependent DNA helicase mph1 OS=Aspergill...  369     4e-113
sp|Q2VF18|DCL2_CRYPA Dicer-like protein 2 OS=Cryphonectria parasi...  373     1e-112
sp|A2Q8R2|MPH1_ASPNC ATP-dependent DNA helicase mph1 OS=Aspergill...  368     1e-112
sp|Q2UNX5|DCL2_ASPOR Dicer-like protein 2 OS=Aspergillus oryzae (...  372     1e-112
sp|Q0CWI2|MPH1_ASPTN ATP-dependent DNA helicase mph1 OS=Aspergill...  366     3e-112
sp|Q0UI93|DCL1_PHANO Dicer-like protein 1 OS=Phaeosphaeria nodoru...  364     4e-109
sp|A2R345|DCL21_ASPNC Dicer-like protein 2-1 OS=Aspergillus niger...  362     6e-109
sp|A4RHU9|DCL2_PYRO7 Dicer-like protein 2 OS=Pyricularia oryzae (...  362     1e-108
sp|Q5N870|DCL3A_ORYSJ Endoribonuclease Dicer homolog 3a OS=Oryza ...  364     1e-108
sp|Q2H0G2|DCL1_CHAGB Dicer-like protein 1 OS=Chaetomium globosum ...  362     4e-108
sp|Q7XD96|DCL3B_ORYSJ Endoribonuclease Dicer homolog 3b OS=Oryza ...  361     1e-107
sp|Q7S8J7|DCL1_NEUCR Dicer-like protein 1 OS=Neurospora crassa (s...  356     4e-106
sp|Q0UL22|DCL2_PHANO Dicer-like protein 2 OS=Phaeosphaeria nodoru...  353     1e-105
sp|Q2VF19|DCL1_CRYPA Dicer-like protein 1 OS=Cryphonectria parasi...  354     2e-105
sp|Q2HG76|MPH1_CHAGB ATP-dependent DNA helicase MPH1 OS=Chaetomiu...  349     2e-105
sp|Q9UT23|MPH1_SCHPO ATP-dependent DNA helicase fml1 OS=Schizosac...  342     3e-105
sp|A4RN08|MPH1_PYRO7 ATP-dependent DNA helicase MPH1 OS=Pyricular...  346     1e-104
sp|Q7SDF3|MPH1_NEUCR ATP-dependent DNA helicase mph1 OS=Neurospor...  342     1e-102
sp|Q6BRF0|MPH1_DEBHA ATP-dependent DNA helicase MPH1 OS=Debaryomy...  336     5e-101
sp|A4RKC3|DCL1_PYRO7 Dicer-like protein 1 OS=Pyricularia oryzae (...  342     6e-101
sp|Q1DY43|MPH1_COCIM ATP-dependent DNA helicase MPH1 OS=Coccidioi...  335     1e-100
sp|A6RIS1|MPH1_BOTFB ATP-dependent DNA helicase MPH1 OS=Botryotin...  335     1e-99 
sp|Q8BGE5|FANCM_MOUSE Fanconi anemia group M protein homolog OS=M...  339     1e-99 
sp|Q9SP32|DCL1_ARATH Endoribonuclease Dicer homolog 1 OS=Arabidop...  337     3e-99 
sp|A7LFZ6|DCL4_ORYSJ Endoribonuclease Dicer homolog 4 OS=Oryza sa...  337     4e-99 
sp|Q5A1A0|MPH1_CANAL ATP-dependent DNA helicase MPH1 OS=Candida a...  332     7e-99 
sp|A7EFH4|MPH1_SCLS1 ATP-dependent DNA helicase mph1 OS=Sclerotin...  331     2e-98 
sp|Q7SCC1|DCL2_NEUCR Dicer-like protein 2 OS=Neurospora crassa (s...  334     2e-98 
sp|Q1DW80|DCL2_COCIM Dicer-like protein 2 OS=Coccidioides immitis...  332     4e-98 
sp|A3GH78|MPH1_PICST ATP-dependent DNA helicase MPH1 OS=Scheffers...  327     8e-98 
sp|P84634|DCL4_ARATH Dicer-like protein 4 OS=Arabidopsis thaliana...  327     9e-96 
sp|Q9HE09|MFH2_SCHPO Putative ATP-dependent DNA helicase fml2 OS=...  315     2e-95 
sp|Q3EBC8|DCL2_ARATH Endoribonuclease Dicer homolog 2 OS=Arabidop...  324     2e-95 
sp|Q6TUI4|DICER_BOVIN Endoribonuclease Dicer OS=Bos taurus OX=991...  322     6e-94 
sp|Q25BN1|DICER_CHICK Endoribonuclease Dicer OS=Gallus gallus OX=...  321     2e-93 
sp|Q8IYD8|FANCM_HUMAN Fanconi anemia group M protein OS=Homo sapi...  320     3e-93 
sp|Q8R418|DICER_MOUSE Endoribonuclease Dicer OS=Mus musculus OX=1...  319     5e-93 
sp|Q9UPY3|DICER_HUMAN Endoribonuclease Dicer OS=Homo sapiens OX=9...  316     8e-92 
sp|Q9VDA0|FANCM_DROME DEAD-box ATP-dependent DNA helicase Fancm O...  315     8e-92 
sp|A0MQH0|DICER_CRIGR Endoribonuclease Dicer OS=Cricetulus griseu...  314     3e-91 
sp|A0A1D5PRR9|FANCM_CHICK Fanconi anemia group M protein OS=Gallu...  314     3e-91 
sp|Q6TV19|DICER_DANRE Endoribonuclease Dicer OS=Danio rerio OX=79...  313     8e-91 
sp|B3DLA6|DICER_XENTR Endoribonuclease Dicer OS=Xenopus tropicali...  313     1e-90 
sp|Q8LMR2|DCL1_ORYSJ Endoribonuclease Dicer homolog 1 OS=Oryza sa...  312     1e-90 
sp|Q9LXW7|DCL3_ARATH Endoribonuclease Dicer homolog 3 OS=Arabidop...  310     4e-90 
sp|Q69LX2|DCL2B_ORYSJ Endoribonuclease Dicer homolog 2b OS=Oryza ...  309     5e-90 
sp|Q09884|DCR1_SCHPO Protein Dicer OS=Schizosaccharomyces pombe (...  309     7e-90 
sp|Q10HL3|DCL2A_ORYSJ Endoribonuclease Dicer homolog 2a OS=Oryza ...  308     1e-89 
sp|A2QX45|DCL22_ASPNC Dicer-like protein 2-2 OS=Aspergillus niger...  307     2e-89 
sp|I3XHK1|FANCM_ARATH DEAD-box ATP-dependent RNA helicase FANCM O...  307     4e-89 
sp|Q75AA7|MPH1_EREGS ATP-dependent DNA helicase MPH1 OS=Eremothec...  302     1e-88 
sp|P34529|DCR1_CAEEL Endoribonuclease dcr-1 OS=Caenorhabditis ele...  304     1e-87 
sp|A7TSV4|MPH1_VANPO ATP-dependent DNA helicase MPH1 OS=Vanderwal...  289     3e-84 
sp|Q6CQX2|MPH1_KLULA ATP-dependent DNA helicase MPH1 OS=Kluyverom...  289     4e-84 
sp|Q58900|Y1505_METJA Putative ATP-dependent RNA helicase MJ1505 ...  272     2e-79 
sp|Q6FPQ3|MPH1_CANGA ATP-dependent DNA helicase MPH1 OS=Candida g...  275     6e-79 
sp|A6ZVS0|MPH1_YEAS7 ATP-dependent DNA helicase MPH1 OS=Saccharom...  274     8e-79 
sp|P40562|MPH1_YEAST ATP-dependent DNA helicase MPH1 OS=Saccharom...  270     1e-77 
sp|A1ZAW0|DCR2_DROME Endoribonuclease Dcr-2 OS=Drosophila melanog...  260     6e-73 
sp|Q7MGP7|RHLB_VIBVY ATP-dependent RNA helicase RhlB OS=Vibrio vu...  182     1e-49 
sp|Q87KH5|RHLB_VIBPA ATP-dependent RNA helicase RhlB OS=Vibrio pa...  182     1e-49 
sp|Q8DDN6|RHLB_VIBVU ATP-dependent RNA helicase RhlB OS=Vibrio vu...  182     2e-49 
sp|A7MXT4|RHLB_VIBC1 ATP-dependent RNA helicase RhlB OS=Vibrio ca...  180     8e-49 
sp|B7VME9|RHLB_VIBA3 ATP-dependent RNA helicase RhlB OS=Vibrio at...  175     5e-47 
sp|A4STJ7|RHLB_AERS4 ATP-dependent RNA helicase RhlB OS=Aeromonas...  173     2e-46 
sp|B5FF87|RHLB_ALIFM ATP-dependent RNA helicase RhlB OS=Aliivibri...  173     4e-46 
sp|Q5E8U5|RHLB_ALIF1 ATP-dependent RNA helicase RhlB OS=Aliivibri...  172     4e-46 
sp|A0KEG9|RHLB_AERHH ATP-dependent RNA helicase RhlB OS=Aeromonas...  171     1e-45 
sp|C4LB49|RHLB_TOLAT ATP-dependent RNA helicase RhlB OS=Tolumonas...  169     6e-45 
sp|Q15N18|RHLB_PSEA6 ATP-dependent RNA helicase RhlB OS=Pseudoalt...  168     1e-44 
sp|Q65RG7|RHLB_MANSM ATP-dependent RNA helicase RhlB OS=Mannheimi...  166     5e-44 
sp|Q970I2|XPB2_SULTO DNA 3'-5' translocase XPB2 OS=Sulfurisphaera...  166     7e-44 
sp|C4K8M8|RHLB_HAMD5 ATP-dependent RNA helicase RhlB OS=Hamiltone...  156     3e-40 
sp|A7TKR8|DED1_VANPO ATP-dependent RNA helicase DED1 OS=Vanderwal...  154     2e-38 
sp|Q4I7K4|DED1_GIBZE ATP-dependent RNA helicase DED1 OS=Gibberell...  153     8e-38 
sp|A7EJY3|DED1_SCLS1 ATP-dependent RNA helicase ded1 OS=Sclerotin...  152     2e-37 
sp|A1CXK7|DED1_NEOFI ATP-dependent RNA helicase ded1 OS=Neosartor...  152     2e-37 
sp|Q6CLR3|DED1_KLULA ATP-dependent RNA helicase DED1 OS=Kluyverom...  151     2e-37 
sp|Q2HBE7|DED1_CHAGB ATP-dependent RNA helicase DED1 OS=Chaetomiu...  151     3e-37 
sp|Q0UWA6|DED1_PHANO ATP-dependent RNA helicase DED1 OS=Phaeospha...  151     3e-37 
sp|Q9P6U9|DED1_NEUCR ATP-dependent RNA helicase ded1 OS=Neurospor...  151     5e-37 
sp|Q4WP13|DED1_ASPFU ATP-dependent RNA helicase ded1 OS=Aspergill...  151     5e-37 
sp|Q2UGK3|DED1_ASPOR ATP-dependent RNA helicase ded1 OS=Aspergill...  151     5e-37 
sp|A2QI25|DED1_ASPNC ATP-dependent RNA helicase ded1 OS=Aspergill...  151     5e-37 
sp|A6SEH9|DED1_BOTFB ATP-dependent RNA helicase ded1 OS=Botryotin...  150     8e-37 
sp|C8V8H4|DED1_EMENI ATP-dependent RNA helicase ded1 OS=Emericell...  149     1e-36 
sp|A1CH78|DED1_ASPCL ATP-dependent RNA helicase ded1 OS=Aspergill...  149     2e-36 
sp|Q1DJF0|DED1_COCIM ATP-dependent RNA helicase DED1 OS=Coccidioi...  148     3e-36 
sp|Q4P733|DED1_USTMA ATP-dependent RNA helicase DED1 OS=Ustilago ...  148     5e-36 
sp|Q0CLJ6|DED1_ASPTN ATP-dependent RNA helicase ded1 OS=Aspergill...  147     6e-36 
sp|Q8LA13|RH11_ARATH DEAD-box ATP-dependent RNA helicase 11 OS=Ar...  146     7e-36 
sp|O13370|DED1_SCHPO ATP-dependent RNA helicase ded1 OS=Schizosac...  146     8e-36 
sp|Q8XA87|DEAD_ECO57 ATP-dependent RNA helicase DeaD OS=Escherich...  146     2e-35 
sp|P0A9P8|DEAD_SHIFL ATP-dependent RNA helicase DeaD OS=Shigella ...  145     2e-35 
sp|P0A9P6|DEAD_ECOLI ATP-dependent RNA helicase DeaD OS=Escherich...  145     2e-35 
sp|P0A9P7|DEAD_ECOL6 ATP-dependent RNA helicase DeaD OS=Escherich...  145     2e-35 
sp|Q6CB69|DED1_YARLI ATP-dependent RNA helicase DED1 OS=Yarrowia ...  144     6e-35 
sp|Q2R1M8|RH52C_ORYSJ DEAD-box ATP-dependent RNA helicase 52C OS=...  143     8e-35 
sp|P33906|DEAD_KLEPN ATP-dependent RNA helicase DeaD OS=Klebsiell...  143     1e-34 
sp|A4RHF1|DED1_PYRO7 ATP-dependent RNA helicase DED1 OS=Pyricular...  143     1e-34 
sp|Q75HJ0|RH37_ORYSJ DEAD-box ATP-dependent RNA helicase 37 OS=Or...  143     1e-34 
sp|Q84W89|RH37_ARATH DEAD-box ATP-dependent RNA helicase 37 OS=Ar...  143     2e-34 
sp|Q6FP38|DBP1_CANGA ATP-dependent RNA helicase DBP1 OS=Candida g...  142     2e-34 
sp|Q6BU54|DED1_DEBHA ATP-dependent RNA helicase DED1 OS=Debaryomy...  142     2e-34 
sp|P06634|DED1_YEAST ATP-dependent RNA helicase DED1 OS=Saccharom...  141     3e-34 
sp|A6ZP47|DED1_YEAS7 ATP-dependent RNA helicase DED1 OS=Saccharom...  141     3e-34 
sp|A5E0U9|DBP8_LODEL ATP-dependent RNA helicase DBP8 OS=Lodderomy...  139     3e-34 
sp|A5DQS0|DED1_PICGU ATP-dependent RNA helicase DED1 OS=Meyerozym...  142     3e-34 
sp|Q9VHP0|DDX3_DROME ATP-dependent RNA helicase bel OS=Drosophila...  141     1e-33 
sp|Q1DHB2|PRP5_COCIM Pre-mRNA-processing ATP-dependent RNA helica...  141     1e-33 
sp|Q6Z4K6|RH52B_ORYSJ DEAD-box ATP-dependent RNA helicase 52B OS=...  140     1e-33 
sp|P44586|DEAD_HAEIN ATP-dependent RNA helicase DeaD OS=Haemophil...  139     1e-33 
sp|P19109|DDX17_DROME ATP-dependent RNA helicase p62 OS=Drosophil...  140     2e-33 
sp|Q89AF9|DEAD_BUCBP ATP-dependent RNA helicase DeaD OS=Buchnera ...  139     2e-33 
sp|Q5A4E2|DED1_CANAL ATP-dependent RNA helicase DED1 OS=Candida a...  139     3e-33 
sp|Q0CIQ3|RRP3_ASPTN ATP-dependent rRNA helicase rrp3 OS=Aspergil...  136     3e-33 
sp|Q2H1Q8|RRP3_CHAGB ATP-dependent rRNA helicase RRP3 OS=Chaetomi...  136     7e-33 
sp|A6R3L3|DED1_AJECN ATP-dependent RNA helicase DED1 OS=Ajellomyc...  138     8e-33 
sp|Q59PR3|DBP8_CANAL ATP-dependent RNA helicase DBP8 OS=Candida a...  135     9e-33 
sp|Q55804|CRHR_SYNY3 RNA helicase CrhR OS=Synechocystis sp. (stra...  136     1e-32 
sp|Q2UNB7|RRP3_ASPOR ATP-dependent rRNA helicase rrp3 OS=Aspergil...  135     1e-32 
sp|Q81IT9|CSHA_BACCR DEAD-box ATP-dependent RNA helicase CshA OS=...  136     1e-32 
sp|Q6CXW0|DBP8_KLULA ATP-dependent RNA helicase DBP8 OS=Kluyverom...  134     1e-32 
sp|Q4IFI0|RRP3_GIBZE ATP-dependent rRNA helicase RRP3 OS=Gibberel...  135     2e-32 
sp|D0PV95|DDX3_CAEEL ATP-dependent RNA helicase laf-1 OS=Caenorha...  137     2e-32 
sp|Q0DB53|RH52A_ORYSJ DEAD-box ATP-dependent RNA helicase 52A OS=...  136     3e-32 
sp|P57453|DEAD_BUCAI ATP-dependent RNA helicase DeaD OS=Buchnera ...  135     3e-32 
sp|Q0UK12|RRP3_PHANO ATP-dependent rRNA helicase RRP3 OS=Phaeosph...  134     3e-32 
sp|A6QRQ7|RRP3_AJECN ATP-dependent rRNA helicase RRP3 OS=Ajellomy...  134     4e-32 
sp|Q4A127|HSDR_STAS1 Type I restriction enzyme SsaAORF53P endonuc...  136     5e-32 
sp|Q1E1N5|RRP3_COCIM ATP-dependent rRNA helicase RRP3 OS=Coccidio...  133     5e-32 
sp|Q1DZK8|DBP3_COCIM ATP-dependent RNA helicase DBP3 OS=Coccidioi...  133     6e-32 
sp|Q9LUW5|RH53_ARATH DEAD-box ATP-dependent RNA helicase 53, mito...  134     7e-32 
sp|A1D405|RRP3_NEOFI ATP-dependent rRNA helicase rrp3 OS=Neosarto...  132     1e-31 
sp|Q4WJE9|RRP3_ASPFU ATP-dependent rRNA helicase rrp3 OS=Aspergil...  132     1e-31 
sp|Q5HJH8|HSDR_STAAC Type I restriction enzyme SauCOLORF180P endo...  135     1e-31 
sp|Q0D8N0|RH53_ORYSJ DEAD-box ATP-dependent RNA helicase 53 OS=Or...  134     1e-31 
sp|Q756G5|DBP8_EREGS ATP-dependent RNA helicase DBP8 OS=Eremothec...  131     1e-31 
sp|P21507|SRMB_ECOLI ATP-dependent RNA helicase SrmB OS=Escherich...  131     1e-31 
sp|Q7Y183|RH10_ORYSJ DEAD-box ATP-dependent RNA helicase 10 OS=Or...  131     2e-31 
sp|A2XKG2|RH10_ORYSI DEAD-box ATP-dependent RNA helicase 10 OS=Or...  131     2e-31 
sp|Q9P6N8|RRP3_SCHPO ATP-dependent rRNA helicase rrp3 OS=Schizosa...  131     3e-31 
sp|A7EML8|RRP3_SCLS1 ATP-dependent rRNA helicase rrp3 OS=Scleroti...  131     3e-31 
sp|P0CQ79|DBP3_CRYNB ATP-dependent RNA helicase DBP3 OS=Cryptococ...  132     4e-31 
sp|A2RB17|RRP3_ASPNC ATP-dependent rRNA helicase rrp3 OS=Aspergil...  130     4e-31 
sp|Q8GY84|RH10_ARATH DEAD-box ATP-dependent RNA helicase 10 OS=Ar...  130     4e-31 
sp|Q6CCZ1|PRP5_YARLI Pre-mRNA-processing ATP-dependent RNA helica...  132     9e-31 
sp|Q0ILZ4|RH9_ORYSJ DEAD-box ATP-dependent RNA helicase 9 OS=Oryz...  131     1e-30 
sp|Q7SBC6|DBP2_NEUCR ATP-dependent RNA helicase dbp2 OS=Neurospor...  130     1e-30 
sp|A3LP87|DBP8_PICST ATP-dependent RNA helicase DBP8 OS=Scheffers...  128     1e-30 
sp|Q5VQL1|RH14_ORYSJ DEAD-box ATP-dependent RNA helicase 14 OS=Or...  131     2e-30 
sp|A1CR32|RRP3_ASPCL ATP-dependent rRNA helicase rrp3 OS=Aspergil...  128     2e-30 
sp|Q0UN57|PRP5_PHANO Pre-mRNA-processing ATP-dependent RNA helica...  132     2e-30 
sp|Q5JKF2|RH40_ORYSJ DEAD-box ATP-dependent RNA helicase 40 OS=Or...  131     2e-30 
sp|Q7RY59|RRP3_NEUCR ATP-dependent rRNA helicase rrp-3 OS=Neurosp...  129     2e-30 
sp|Q0DM51|RH3_ORYSJ DEAD-box ATP-dependent RNA helicase 3, chloro...  131     2e-30 
sp|Q9C551|RH5_ARATH DEAD-box ATP-dependent RNA helicase 5 OS=Arab...  129     3e-30 
sp|Q9LUW6|RH9_ARATH DEAD-box ATP-dependent RNA helicase 9, mitoch...  129     3e-30 
sp|A3LS22|RRP3_PICST ATP-dependent rRNA helicase RRP3 OS=Scheffer...  128     4e-30 
sp|Q6YS30|RH5_ORYSJ DEAD-box ATP-dependent RNA helicase 5 OS=Oryz...  128     5e-30 
sp|A0A1D6LAB7|RH3B_MAIZE DEAD-box ATP-dependent RNA helicase 3B, ...  129     5e-30 
sp|Q4PHU9|DBP2_USTMA ATP-dependent RNA helicase DBP2 OS=Ustilago ...  128     6e-30 
sp|A0A1D6GDY8|RH3A_MAIZE DEAD-box ATP-dependent RNA helicase 3A, ...  129     9e-30 
sp|A6RW56|RRP3_BOTFB ATP-dependent rRNA helicase rrp3 OS=Botryoti...  126     1e-29 
sp|Q54VT4|DDX47_DICDI Probable ATP-dependent RNA helicase ddx47 O...  127     2e-29 
sp|P34580|DDX47_CAEEL Putative ATP-dependent RNA helicase T26G10....  126     2e-29 
sp|Q8L7S8|RH3_ARATH DEAD-box ATP-dependent RNA helicase 3, chloro...  127     2e-29 
sp|Q6CH58|RRP3_YARLI ATP-dependent rRNA helicase RRP3 OS=Yarrowia...  124     4e-29 
sp|Q6FNK8|RRP3_CANGA ATP-dependent rRNA helicase RRP3 OS=Candida ...  124     5e-29 
sp|Q6CT85|RRP3_KLULA ATP-dependent rRNA helicase RRP3 OS=Kluyvero...  124     6e-29 
sp|Q54CE0|DDX17_DICDI Probable ATP-dependent RNA helicase ddx17 O...  126     9e-29 
sp|Q6FM43|PRP28_CANGA Pre-mRNA-splicing ATP-dependent RNA helicas...  124     1e-28 
sp|P09052|VASA1_DROME ATP-dependent RNA helicase vasa OS=Drosophi...  124     2e-28 
sp|A5DQF1|RRP3_PICGU ATP-dependent rRNA helicase RRP3 OS=Meyerozy...  123     2e-28 
sp|Q4P3U9|RRP3_USTMA ATP-dependent rRNA helicase RRP3 OS=Ustilago...  123     2e-28 
sp|Q75EW9|RRP3_EREGS ATP-dependent rRNA helicase RRP3 OS=Eremothe...  122     3e-28 
sp|Q5ACU6|RRP3_CANAL ATP-dependent rRNA helicase RRP3 OS=Candida ...  122     3e-28 
sp|Q6BQ61|RRP3_DEBHA ATP-dependent rRNA helicase RRP3 OS=Debaryom...  121     5e-28 
sp|P44701|SRMB_HAEIN ATP-dependent RNA helicase SrmB OS=Haemophil...  121     5e-28 
sp|A7TS37|RRP3_VANPO ATP-dependent rRNA helicase RRP3 OS=Vanderwa...  121     6e-28 
sp|A6ZSX1|RRP3_YEAS7 ATP-dependent rRNA helicase RRP3 OS=Saccharo...  121     1e-27 
sp|P38712|RRP3_YEAST ATP-dependent rRNA helicase RRP3 OS=Saccharo...  120     2e-27 
sp|P0CR00|RRP3_CRYNJ ATP-dependent rRNA helicase RRP3 OS=Cryptoco...  119     2e-27 
sp|P0CR01|RRP3_CRYNB ATP-dependent rRNA helicase RRP3 OS=Cryptoco...  119     2e-27 
sp|Q9CWX9|DDX47_MOUSE Probable ATP-dependent RNA helicase DDX47 O...  119     3e-27 
sp|Q9H0S4|DDX47_HUMAN Probable ATP-dependent RNA helicase DDX47 O...  118     4e-27 
sp|Q29S22|DDX47_BOVIN Probable ATP-dependent RNA helicase DDX47 O...  118     6e-27 
sp|Q9DF35|DD21A_XENLA Nucleolar RNA helicase 2-A OS=Xenopus laevi...  120     8e-27 
sp|Q54TJ4|DDX27_DICDI Probable ATP-dependent RNA helicase ddx27 O...  119     2e-26 
sp|Q9DF36|DD21B_XENLA Nucleolar RNA helicase 2-B OS=Xenopus laevi...  118     2e-26 
sp|Q9VIF6|DDX47_DROME ATP-dependent RNA helicase DDX47 OS=Drosoph...  116     3e-26 
sp|Q96GQ7|DDX27_HUMAN Probable ATP-dependent RNA helicase DDX27 O...  117     5e-26 
sp|A1A4H6|DDX27_BOVIN Probable ATP-dependent RNA helicase DDX27 O...  116     9e-26 
sp|O25029|RHPA_HELPY DEAD-box ATP-dependent RNA helicase RhpA OS=...  113     3e-25 
sp|B9XXL6|RHPA_HELP8 DEAD-box ATP-dependent RNA helicase RhpA OS=...  112     4e-25 
sp|A4RK80|PRP28_PYRO7 Pre-mRNA-splicing ATP-dependent RNA helicas...  112     1e-24 
sp|P23394|PRP28_YEAST Pre-mRNA-splicing ATP-dependent RNA helicas...  112     2e-24 
sp|Q09903|DRS1_SCHPO ATP-dependent RNA helicase drs1 OS=Schizosac...  111     6e-24 
sp|Q4TVV3|DDX46_DANRE Probable ATP-dependent RNA helicase DDX46 O...  111     9e-24 
sp|Q07736|T1RA_ECOLX Type I restriction enzyme EcoAI endonuclease...  109     2e-23 
sp|Q5R6D8|DDX46_PONAB Probable ATP-dependent RNA helicase DDX46 O...  107     1e-22 
sp|Q7L014|DDX46_HUMAN Probable ATP-dependent RNA helicase DDX46 O...  107     1e-22 
sp|Q62780|DDX46_RAT Probable ATP-dependent RNA helicase DDX46 OS=...  107     1e-22 
sp|Q569Z5|DDX46_MOUSE Probable ATP-dependent RNA helicase DDX46 O...  107     1e-22 
sp|Q6BPT8|DBP6_DEBHA ATP-dependent RNA helicase DBP6 OS=Debaryomy...  106     1e-22 
sp|Q914K8|Y022_SIFVH Putative helicase 22 OS=Sulfolobus islandicu...  104     6e-22 
sp|Q9VCU9|DCR1_DROME Endoribonuclease Dcr-1 OS=Drosophila melanog...  101     9e-21 

Sequences not found previously or not previously below threshold:

sp|C3LQR1|RHLB_VIBCM ATP-dependent RNA helicase RhlB OS=Vibrio ch...  178     7e-48
sp|Q9KV52|RHLB_VIBCH ATP-dependent RNA helicase RhlB OS=Vibrio ch...  178     7e-48
sp|A5F3R4|RHLB_VIBC3 ATP-dependent RNA helicase RhlB OS=Vibrio ch...  178     7e-48
sp|Q2NQB2|RHLB_SODGM ATP-dependent RNA helicase RhlB OS=Sodalis g...  169     4e-45
sp|A1SZG4|RHLB_PSYIN ATP-dependent RNA helicase RhlB OS=Psychromo...  164     2e-43
sp|Q6LLL5|RHLB_PHOPR ATP-dependent RNA helicase RhlB OS=Photobact...  164     4e-43
sp|C6DHF5|RHLB_PECCP ATP-dependent RNA helicase RhlB OS=Pectobact...  162     2e-42
sp|Q0I1X0|RHLB_HISS1 ATP-dependent RNA helicase RhlB OS=Histophil...  161     3e-42
sp|B6EPA4|RHLB_ALISL ATP-dependent RNA helicase RhlB OS=Aliivibri...  162     3e-42
sp|Q6CZD9|RHLB_PECAS ATP-dependent RNA helicase RhlB OS=Pectobact...  161     4e-42
sp|B4F1V3|RHLB_PROMH ATP-dependent RNA helicase RhlB OS=Proteus m...  161     6e-42
sp|B0UUZ9|RHLB_HISS2 ATP-dependent RNA helicase RhlB OS=Histophil...  160     8e-42
sp|Q088J2|RHLB_SHEFN ATP-dependent RNA helicase RhlB OS=Shewanell...  160     1e-41
sp|A0KS84|RHLB_SHESA ATP-dependent RNA helicase RhlB OS=Shewanell...  159     4e-41
sp|A6VKC3|RHLB_ACTSZ ATP-dependent RNA helicase RhlB OS=Actinobac...  158     5e-41
sp|B1JQ11|RHLB_YERPY ATP-dependent RNA helicase RhlB OS=Yersinia ...  158     5e-41
sp|Q66G19|RHLB_YERPS ATP-dependent RNA helicase RhlB OS=Yersinia ...  158     5e-41
sp|A4TRC8|RHLB_YERPP ATP-dependent RNA helicase RhlB OS=Yersinia ...  158     5e-41
sp|Q1CNK3|RHLB_YERPN ATP-dependent RNA helicase RhlB OS=Yersinia ...  158     5e-41
sp|Q8ZAD8|RHLB_YERPE ATP-dependent RNA helicase RhlB OS=Yersinia ...  158     5e-41
sp|B2K046|RHLB_YERPB ATP-dependent RNA helicase RhlB OS=Yersinia ...  158     5e-41
sp|Q1CBQ4|RHLB_YERPA ATP-dependent RNA helicase RhlB OS=Yersinia ...  158     5e-41
sp|A7FD47|RHLB_YERP3 ATP-dependent RNA helicase RhlB OS=Yersinia ...  158     5e-41
sp|Q7MYL2|RHLB_PHOLL ATP-dependent RNA helicase RhlB OS=Photorhab...  158     5e-41
sp|Q0HQL1|RHLB_SHESR ATP-dependent RNA helicase RhlB OS=Shewanell...  158     5e-41
sp|Q0HN76|RHLB_SHESM ATP-dependent RNA helicase RhlB OS=Shewanell...  158     5e-41
sp|Q8EJQ5|RHLB_SHEON ATP-dependent RNA helicase RhlB OS=Shewanell...  158     7e-41
sp|B0TJ29|RHLB_SHEHH ATP-dependent RNA helicase RhlB OS=Shewanell...  156     2e-40
sp|A1RFB3|RHLB_SHESW ATP-dependent RNA helicase RhlB OS=Shewanell...  156     2e-40
sp|A4YB09|RHLB_SHEPC ATP-dependent RNA helicase RhlB OS=Shewanell...  156     2e-40
sp|A8GZJ0|RHLB_SHEPA ATP-dependent RNA helicase RhlB OS=Shewanell...  156     2e-40
sp|B2VG58|RHLB_ERWT9 ATP-dependent RNA helicase RhlB OS=Erwinia t...  156     2e-40
sp|B8CHZ1|RHLB_SHEPW ATP-dependent RNA helicase RhlB OS=Shewanell...  156     2e-40
sp|A8G828|RHLB_SERP5 ATP-dependent RNA helicase RhlB OS=Serratia ...  156     3e-40
sp|P0A2P0|RHLB_SALTY ATP-dependent RNA helicase RhlB OS=Salmonell...  155     4e-40
sp|P0A2P1|RHLB_SALTI ATP-dependent RNA helicase RhlB OS=Salmonell...  155     4e-40
sp|B4TNT3|RHLB_SALSV ATP-dependent RNA helicase RhlB OS=Salmonell...  155     4e-40
sp|C0Q2V9|RHLB_SALPC ATP-dependent RNA helicase RhlB OS=Salmonell...  155     4e-40
sp|A9MXF3|RHLB_SALPB ATP-dependent RNA helicase RhlB OS=Salmonell...  155     4e-40
sp|B4SZ26|RHLB_SALNS ATP-dependent RNA helicase RhlB OS=Salmonell...  155     4e-40
sp|B4TB13|RHLB_SALHS ATP-dependent RNA helicase RhlB OS=Salmonell...  155     4e-40
sp|B5RFS3|RHLB_SALG2 ATP-dependent RNA helicase RhlB OS=Salmonell...  155     4e-40
sp|B5QVH2|RHLB_SALEP ATP-dependent RNA helicase RhlB OS=Salmonell...  155     4e-40
sp|Q57HT6|RHLB_SALCH ATP-dependent RNA helicase RhlB OS=Salmonell...  155     4e-40
sp|B5EZ40|RHLB_SALA4 ATP-dependent RNA helicase RhlB OS=Salmonell...  155     4e-40
sp|A9L5D5|RHLB_SHEB9 ATP-dependent RNA helicase RhlB OS=Shewanell...  156     4e-40
sp|A6WTD3|RHLB_SHEB8 ATP-dependent RNA helicase RhlB OS=Shewanell...  156     4e-40
sp|A3D9I5|RHLB_SHEB5 ATP-dependent RNA helicase RhlB OS=Shewanell...  156     5e-40
sp|B8E670|RHLB_SHEB2 ATP-dependent RNA helicase RhlB OS=Shewanell...  156     5e-40
sp|B5FN74|RHLB_SALDC ATP-dependent RNA helicase RhlB OS=Salmonell...  155     6e-40
sp|A9MJ29|RHLB_SALAR ATP-dependent RNA helicase RhlB OS=Salmonell...  154     7e-40
sp|A4WG30|RHLB_ENT38 ATP-dependent RNA helicase RhlB OS=Enterobac...  154     9e-40
sp|B5BIS9|RHLB_SALPK ATP-dependent RNA helicase RhlB OS=Salmonell...  154     1e-39
sp|A3Q9R3|RHLB_SHELP ATP-dependent RNA helicase RhlB OS=Shewanell...  154     1e-39
sp|B1KQF6|RHLB_SHEWM ATP-dependent RNA helicase RhlB OS=Shewanell...  154     2e-39
sp|A7MQI2|RHLB_CROS8 ATP-dependent RNA helicase RhlB OS=Cronobact...  154     2e-39
sp|Q9CJS1|RHLB_PASMU ATP-dependent RNA helicase RhlB OS=Pasteurel...  154     2e-39
sp|Q329V8|RHLB_SHIDS ATP-dependent RNA helicase RhlB OS=Shigella ...  153     2e-39
sp|Q3YVI4|RHLB_SHISS ATP-dependent RNA helicase RhlB OS=Shigella ...  153     2e-39
sp|P0A8K0|RHLB_SHIFL ATP-dependent RNA helicase RhlB OS=Shigella ...  153     2e-39
sp|Q1R4F9|RHLB_ECOUT ATP-dependent RNA helicase RhlB OS=Escherich...  153     2e-39
sp|B6I4B6|RHLB_ECOSE ATP-dependent RNA helicase RhlB OS=Escherich...  153     2e-39
sp|P0A8J8|RHLB_ECOLI ATP-dependent RNA helicase RhlB OS=Escherich...  153     2e-39
sp|B1IWC0|RHLB_ECOLC ATP-dependent RNA helicase RhlB OS=Escherich...  153     2e-39
sp|P0A8J9|RHLB_ECOL6 ATP-dependent RNA helicase RhlB OS=Escherich...  153     2e-39
sp|Q0TAU3|RHLB_ECOL5 ATP-dependent RNA helicase RhlB OS=Escherich...  153     2e-39
sp|A1AHV0|RHLB_ECOK1 ATP-dependent RNA helicase RhlB OS=Escherich...  153     2e-39
sp|A8A6N4|RHLB_ECOHS ATP-dependent RNA helicase RhlB OS=Escherich...  153     2e-39
sp|B1X9Z4|RHLB_ECODH ATP-dependent RNA helicase RhlB OS=Escherich...  153     2e-39
sp|C4ZZ48|RHLB_ECOBW ATP-dependent RNA helicase RhlB OS=Escherich...  153     2e-39
sp|B7M5C7|RHLB_ECO8A ATP-dependent RNA helicase RhlB OS=Escherich...  153     2e-39
sp|B7MR01|RHLB_ECO81 ATP-dependent RNA helicase RhlB OS=Escherich...  153     2e-39
sp|B7L8B6|RHLB_ECO55 ATP-dependent RNA helicase RhlB OS=Escherich...  153     2e-39
sp|B7MGJ1|RHLB_ECO45 ATP-dependent RNA helicase RhlB OS=Escherich...  153     2e-39
sp|B7UMN5|RHLB_ECO27 ATP-dependent RNA helicase RhlB OS=Escherich...  153     2e-39
sp|A7ZTY2|RHLB_ECO24 ATP-dependent RNA helicase RhlB OS=Escherich...  153     2e-39
sp|Q31UK5|RHLB_SHIBS ATP-dependent RNA helicase RhlB OS=Shigella ...  153     3e-39
sp|B2TU12|RHLB_SHIB3 ATP-dependent RNA helicase RhlB OS=Shigella ...  153     3e-39
sp|B7NF85|RHLB_ECOLU ATP-dependent RNA helicase RhlB OS=Escherich...  153     3e-39
sp|B5YY28|RHLB_ECO5E ATP-dependent RNA helicase RhlB OS=Escherich...  153     3e-39
sp|Q0SYX0|RHLB_SHIF8 ATP-dependent RNA helicase RhlB OS=Shigella ...  153     3e-39
sp|B7LU75|RHLB_ESCF3 ATP-dependent RNA helicase RhlB OS=Escherich...  153     4e-39
sp|Q8XAT4|RHLB_ECO57 ATP-dependent RNA helicase RhlB OS=Escherich...  153     4e-39
sp|A8G0U0|RHLB_SHESH ATP-dependent RNA helicase RhlB OS=Shewanell...  153     4e-39
sp|B7NTG2|RHLB_ECO7I ATP-dependent RNA helicase RhlB OS=Escherich...  153     5e-39
sp|A8ACT3|RHLB_CITK8 ATP-dependent RNA helicase RhlB OS=Citrobact...  152     5e-39
sp|B1LLV3|RHLB_ECOSM ATP-dependent RNA helicase RhlB OS=Escherich...  152     5e-39
sp|B5XYY9|RHLB_KLEP3 ATP-dependent RNA helicase RhlB OS=Klebsiell...  152     5e-39
sp|A5UI36|RHLB_HAEIG ATP-dependent RNA helicase RhlB OS=Haemophil...  152     5e-39
sp|A6TGG9|RHLB_KLEP7 ATP-dependent RNA helicase RhlB OS=Klebsiell...  152     7e-39
sp|A5UDI1|RHLB_HAEIE ATP-dependent RNA helicase RhlB OS=Haemophil...  151     1e-38
sp|Q12S35|RHLB_SHEDO ATP-dependent RNA helicase RhlB OS=Shewanell...  151     2e-38
sp|A1SAL1|RHLB_SHEAM ATP-dependent RNA helicase RhlB OS=Shewanell...  149     1e-37
sp|P44922|RHLB_HAEIN ATP-dependent RNA helicase RhlB OS=Haemophil...  145     2e-36
sp|Q75B50|DED1_EREGS ATP-dependent RNA helicase DED1 OS=Eremothec...  148     3e-36
sp|Q5QYF8|RHLB_IDILO ATP-dependent RNA helicase RhlB OS=Idiomarin...  144     5e-36
sp|Q8TFK8|DED1_CANGA ATP-dependent RNA helicase DED1 OS=Candida g...  144     3e-35
sp|Q9M2F9|RH52_ARATH DEAD-box ATP-dependent RNA helicase 52 OS=Ar...  141     4e-34
sp|A3LQ01|DED1_PICST ATP-dependent RNA helicase DED1 OS=Scheffers...  141     6e-34
sp|Q62167|DDX3X_MOUSE ATP-dependent RNA helicase DDX3X OS=Mus mus...  138     5e-33
sp|A5DZE6|DED1_LODEL ATP-dependent RNA helicase DED1 OS=Lodderomy...  138     7e-33
sp|Q2U2J6|PRP5_ASPOR Pre-mRNA-processing ATP-dependent RNA helica...  139     8e-33
sp|Q3BNH8|RHLB_XANE5 ATP-dependent RNA helicase RhlB OS=Xanthomon...  137     8e-33
sp|Q8P4D4|RHLB_XANCP ATP-dependent RNA helicase RhlB OS=Xanthomon...  137     8e-33
sp|B0RWT6|RHLB_XANCB ATP-dependent RNA helicase RhlB OS=Xanthomon...  137     8e-33
sp|Q4UPY5|RHLB_XANC8 ATP-dependent RNA helicase RhlB OS=Xanthomon...  137     8e-33
sp|Q501J6|DDX17_MOUSE Probable ATP-dependent RNA helicase DDX17 O...  137     1e-32
sp|Q8PFZ3|RHLB_XANAC ATP-dependent RNA helicase RhlB OS=Xanthomon...  136     1e-32
sp|P24346|DDX3_XENLA Putative ATP-dependent RNA helicase an3 OS=X...  138     1e-32
sp|A1D373|PRP5_NEOFI Pre-mRNA-processing ATP-dependent RNA helica...  138     1e-32
sp|A1CQA9|PRP5_ASPCL Pre-mRNA-processing ATP-dependent RNA helica...  138     1e-32
sp|Q6HPE6|CSHA_BACHK DEAD-box ATP-dependent RNA helicase CshA OS=...  136     2e-32
sp|Q81VG0|CSHA_BACAN DEAD-box ATP-dependent RNA helicase CshA OS=...  136     2e-32
sp|A0R8U6|CSHA_BACAH DEAD-box ATP-dependent RNA helicase CshA OS=...  136     2e-32
sp|Q92841|DDX17_HUMAN Probable ATP-dependent RNA helicase DDX17 O...  137     2e-32
sp|Q73EU1|CSHA_BACC1 DEAD-box ATP-dependent RNA helicase CshA OS=...  135     2e-32
sp|Q63GX5|CSHA_BACCZ DEAD-box ATP-dependent RNA helicase CshA OS=...  135     2e-32
sp|O15523|DDX3Y_HUMAN ATP-dependent RNA helicase DDX3Y OS=Homo sa...  137     2e-32
sp|Q6CIV2|DBP2_KLULA ATP-dependent RNA helicase DBP2 OS=Kluyverom...  136     2e-32
sp|Q59LU0|DBP2_CANAL ATP-dependent RNA helicase DBP2 OS=Candida a...  135     2e-32
sp|Q5RF43|DDX3Y_PONAB ATP-dependent RNA helicase DDX3Y OS=Pongo a...  136     3e-32
sp|Q6GVM6|DDX3Y_PANTR ATP-dependent RNA helicase DDX3Y OS=Pan tro...  136     3e-32
sp|Q5GUR8|RHLB_XANOR ATP-dependent RNA helicase RhlB OS=Xanthomon...  135     4e-32
sp|O00571|DDX3X_HUMAN ATP-dependent RNA helicase DDX3X OS=Homo sa...  136     4e-32
sp|P16381|DDX3L_MOUSE Putative ATP-dependent RNA helicase Pl10 OS...  136     4e-32
sp|Q4WT99|PRP5_ASPFU Pre-mRNA-processing ATP-dependent RNA helica...  137     4e-32
sp|Q5BDW4|PRP5_EMENI Pre-mRNA-processing ATP-dependent RNA helica...  137     5e-32
sp|Q0D1K3|PRP5_ASPTN Pre-mRNA-processing ATP-dependent RNA helica...  136     5e-32
sp|G0SFM2|DBP2_CHATD ATP-dependent RNA helicase DBP2 OS=Chaetomiu...  134     5e-32
sp|Q9PA24|RHLB_XYLFA ATP-dependent RNA helicase RhlB OS=Xylella f...  134     5e-32
sp|A4RN46|PRP5_PYRO7 Pre-mRNA-processing ATP-dependent RNA helica...  136     6e-32
sp|Q62095|DDX3Y_MOUSE ATP-dependent RNA helicase DDX3Y OS=Mus mus...  135     7e-32
sp|Q8NYL9|HSDR_STAAW Type I restriction enzyme SauMW2ORF169P endo...  136     8e-32
sp|Q6GCT1|HSDR_STAAS Type I restriction enzyme SauMSSORF170P endo...  136     8e-32
sp|Q6GKB1|HSDR_STAAR Type I restriction enzyme SauMRSORF196P endo...  136     8e-32
sp|Q0UY62|DBP3_PHANO ATP-dependent RNA helicase DBP3 OS=Phaeospha...  134     8e-32
sp|Q7A801|HSDR_STAAN Type I restriction enzyme SauN315I endonucle...  136     8e-32
sp|Q99X26|HSDR_STAAM Type I restriction enzyme SauMu50ORF195P end...  136     8e-32
sp|A7ENE0|PRP5_SCLS1 Pre-mRNA-processing ATP-dependent RNA helica...  136     9e-32
sp|P24784|DBP1_YEAST ATP-dependent RNA helicase DBP1 OS=Saccharom...  134     9e-32
sp|A6ZWD3|DBP1_YEAS7 ATP-dependent RNA helicase DBP1 OS=Saccharom...  134     9e-32
sp|Q879Y6|RHLB_XYLFT ATP-dependent RNA helicase RhlB OS=Xylella f...  133     1e-31
sp|A2QQA8|PRP5_ASPNC Pre-mRNA-processing ATP-dependent RNA helica...  136     1e-31
sp|Q7SH33|PRP5_NEUCR Pre-mRNA-processing ATP-dependent RNA helica...  136     1e-31
sp|P24783|DBP2_YEAST ATP-dependent RNA helicase DBP2 OS=Saccharom...  133     1e-31
sp|A6ZRX0|DBP2_YEAS7 ATP-dependent RNA helicase DBP2 OS=Saccharom...  133     1e-31
sp|A6RW79|PRP5_BOTFB Pre-mRNA-processing ATP-dependent RNA helica...  135     2e-31
sp|A7TK63|DBP8_VANPO ATP-dependent RNA helicase DBP8 OS=Vanderwal...  131     2e-31
sp|Q8K9H6|DEAD_BUCAP ATP-dependent RNA helicase DeaD OS=Buchnera ...  133     2e-31
sp|P0CQ78|DBP3_CRYNJ ATP-dependent RNA helicase DBP3 OS=Cryptococ...  132     3e-31
sp|Q8SRB2|DBP2_ENCCU ATP-dependent RNA helicase DBP2 OS=Encephali...  131     3e-31
sp|Q6BGU8|DBP8_DEBHA ATP-dependent RNA helicase DBP8 OS=Debaryomy...  129     5e-31
sp|A6SFW7|DBP2_BOTFB ATP-dependent RNA helicase dbp2 OS=Botryotin...  131     6e-31
sp|P0CQ74|DED1_CRYNJ ATP-dependent RNA helicase ded1 OS=Cryptococ...  132     6e-31
sp|P0CQ75|DED1_CRYNB ATP-dependent RNA helicase ded1 OS=Cryptococ...  132     6e-31
sp|A7E449|DBP2_SCLS1 ATP-dependent RNA helicase dbp2 OS=Sclerotin...  131     7e-31
sp|Q2H720|DBP2_CHAGB ATP-dependent RNA helicase DBP2 OS=Chaetomiu...  131     7e-31
sp|Q6FLF3|DBP2_CANGA ATP-dependent RNA helicase DBP2 OS=Candida g...  131     7e-31
sp|A6RGE3|DBP2_AJECN ATP-dependent RNA helicase DBP2 OS=Ajellomyc...  130     9e-31
sp|Q5B5E7|RRP3_EMENI ATP-dependent rRNA helicase rrp3 OS=Emericel...  129     1e-30
sp|Q755N4|DBP2_EREGS ATP-dependent RNA helicase DBP2 OS=Eremothec...  130     1e-30
sp|Q6C4D4|DBP2_YARLI ATP-dependent RNA helicase DBP2 OS=Yarrowia ...  130     1e-30
sp|Q4X195|DBP2_ASPFU ATP-dependent RNA helicase dbp2 OS=Aspergill...  130     2e-30
sp|P38719|DBP8_YEAST ATP-dependent RNA helicase DBP8 OS=Saccharom...  128     2e-30
sp|A6ZT77|DBP8_YEAS7 ATP-dependent RNA helicase DBP8 OS=Saccharom...  128     2e-30
sp|Q5W5U4|DDX4_BOVIN Probable ATP-dependent RNA helicase DDX4 OS=...  131     2e-30
sp|Q2HAD8|PRP5_CHAGB Pre-mRNA-processing ATP-dependent RNA helica...  132     2e-30
sp|Q5B0J9|DBP2_EMENI ATP-dependent RNA helicase dbp2 OS=Emericell...  129     2e-30
sp|A1DGZ7|DBP2_NEOFI ATP-dependent RNA helicase dbp2 OS=Neosartor...  129     2e-30
sp|A5DLE0|DBP8_PICGU ATP-dependent RNA helicase DBP8 OS=Meyerozym...  127     2e-30
sp|A5E1W4|DBP3_LODEL ATP-dependent RNA helicase DBP3 OS=Lodderomy...  129     2e-30
sp|Q61496|DDX4_MOUSE ATP-dependent RNA helicase DDX4 OS=Mus muscu...  130     2e-30
sp|Q5R4I9|DDX5_PONAB Probable ATP-dependent RNA helicase DDX5 OS=...  130     3e-30
sp|Q61656|DDX5_MOUSE Probable ATP-dependent RNA helicase DDX5 OS=...  130     3e-30
sp|P17844|DDX5_HUMAN Probable ATP-dependent RNA helicase DDX5 OS=...  130     3e-30
sp|Q4PFD9|PRP5_USTMA Pre-mRNA-processing ATP-dependent RNA helica...  131     3e-30
sp|Q4IP34|PRP5_GIBZE Pre-mRNA-processing ATP-dependent RNA helica...  131     3e-30
sp|A6QXC1|DBP3_AJECN ATP-dependent RNA helicase DBP3 OS=Ajellomyc...  128     3e-30
sp|A7TJ36|DBP3_VANPO ATP-dependent RNA helicase DBP3 OS=Vanderwal...  128     4e-30
sp|A5A6J2|DDX5_PANTR Probable ATP-dependent RNA helicase DDX5 OS=...  129     4e-30
sp|Q9SA27|RH36_ARATH DEAD-box ATP-dependent RNA helicase 36 OS=Ar...  127     5e-30
sp|Q4R6M5|DDX5_MACFA Probable ATP-dependent RNA helicase DDX5 OS=...  129     6e-30
sp|Q3MSQ8|DDX4_PELLE Probable ATP-dependent RNA helicase DDX4 OS=...  129     6e-30
sp|A4QSS5|DBP2_PYRO7 ATP-dependent RNA helicase DBP2 OS=Pyricular...  128     6e-30
sp|Q5L3G9|CSHA_GEOKA DEAD-box ATP-dependent RNA helicase CshA OS=...  126     8e-30
sp|Q2U070|DBP2_ASPOR ATP-dependent RNA helicase dbp2 OS=Aspergill...  127     8e-30
sp|P96614|CSHA_BACSU DEAD-box ATP-dependent RNA helicase CshA OS=...  127     9e-30
sp|Q6GWX0|DDX4_PIG Probable ATP-dependent RNA helicase DDX4 OS=Su...  128     1e-29
sp|Q5AWA6|DBP3_EMENI ATP-dependent RNA helicase dbp3 OS=Emericell...  126     1e-29
sp|Q6C9P3|DBP3_YARLI ATP-dependent RNA helicase DBP3 OS=Yarrowia ...  127     1e-29
sp|Q8W4R3|RH30_ARATH DEAD-box ATP-dependent RNA helicase 30 OS=Ar...  127     1e-29
sp|Q1DP69|DBP2_COCIM ATP-dependent RNA helicase DBP2 OS=Coccidioi...  127     1e-29
sp|Q4R5S7|DDX4_MACFA Probable ATP-dependent RNA helicase DDX4 OS=...  128     1e-29
sp|Q9C718|RH20_ARATH DEAD-box ATP-dependent RNA helicase 20 OS=Ar...  126     2e-29
sp|A1C6C4|DBP2_ASPCL ATP-dependent RNA helicase dbp2 OS=Aspergill...  127     2e-29
sp|Q9NQI0|DDX4_HUMAN Probable ATP-dependent RNA helicase DDX4 OS=...  128     2e-29
sp|A2QC74|DBP2_ASPNC ATP-dependent RNA helicase dbp2 OS=Aspergill...  127     2e-29
sp|Q6FQZ0|DBP8_CANGA ATP-dependent RNA helicase DBP8 OS=Candida g...  125     2e-29
sp|Q8H136|RH14_ARATH DEAD-box ATP-dependent RNA helicase 14 OS=Ar...  127     2e-29
sp|Q5APT8|DBP3_CANAL ATP-dependent RNA helicase DBP3 OS=Candida a...  126     3e-29
sp|P24782|DBP2_SCHPO ATP-dependent RNA helicase dbp2 OS=Schizosac...  126     3e-29
sp|Q6BY27|DBP2_DEBHA ATP-dependent RNA helicase DBP2 OS=Debaryomy...  126     3e-29
sp|Q9LYJ9|RH46_ARATH DEAD-box ATP-dependent RNA helicase 46 OS=Ar...  127     3e-29
sp|Q5QMN3|RH20_ORYSJ DEAD-box ATP-dependent RNA helicase 20 OS=Or...  125     3e-29
sp|Q814I2|DBPA_BACCR ATP-dependent RNA helicase DbpA OS=Bacillus ...  125     3e-29
sp|Q7S5R1|DBP3_NEUCR ATP-dependent RNA helicase dbp-3 OS=Neurospo...  126     3e-29
sp|A4RGD1|RRP3_PYRO7 ATP-dependent rRNA helicase RRP3 OS=Pyricula...  126     4e-29
sp|Q4IJH1|DBP3_GIBZE ATP-dependent RNA helicase DBP3 OS=Gibberell...  126     4e-29
sp|A5DAC8|DBP3_PICGU ATP-dependent RNA helicase DBP3 OS=Meyerozym...  125     4e-29
sp|Q64060|DDX4_RAT Probable ATP-dependent RNA helicase DDX4 OS=Ra...  127     4e-29
sp|A5DL80|DBP2_PICGU ATP-dependent RNA helicase DBP2 OS=Meyerozym...  125     5e-29
sp|P9WH05|DEAD_MYCTU ATP-dependent RNA helicase DeaD OS=Mycobacte...  125     6e-29
sp|P9WH04|DEAD_MYCTO ATP-dependent RNA helicase DeaD OS=Mycobacte...  125     6e-29
sp|P20447|DBP3_YEAST ATP-dependent RNA helicase DBP3 OS=Saccharom...  124     6e-29
sp|Q91372|DDX4_XENLA Probable ATP-dependent RNA helicase DDX4 OS=...  126     6e-29
sp|Q755A5|DBP3_EREGS ATP-dependent RNA helicase DBP3 OS=Eremothec...  125     6e-29
sp|P0A4D8|CSHA_STRR6 DEAD-box ATP-dependent RNA helicase CshA OS=...  124     7e-29
sp|P0A4D7|CSHA_STRPN DEAD-box ATP-dependent RNA helicase CshA OS=...  124     7e-29
sp|Q6FS54|DBP3_CANGA ATP-dependent RNA helicase DBP3 OS=Candida g...  124     7e-29
sp|A6ZUA1|DBP3_YEAS7 ATP-dependent RNA helicase DBP3 OS=Saccharom...  124     7e-29
sp|Q0CL13|DBP3_ASPTN ATP-dependent RNA helicase dbp3 OS=Aspergill...  124     8e-29
sp|Q966L9|GLH2_CAEEL ATP-dependent RNA helicase glh-2 OS=Caenorha...  126     9e-29
sp|P25888|RHLE_ECOLI ATP-dependent RNA helicase RhlE OS=Escherich...  123     9e-29
sp|Q6CT49|PRP28_KLULA Pre-mRNA-splicing ATP-dependent RNA helicas...  124     9e-29
sp|P42305|DBPA_BACSU ATP-dependent RNA helicase DbpA OS=Bacillus ...  123     1e-28
sp|Q9P7C7|PRP11_SCHPO Pre-mRNA-processing ATP-dependent RNA helic...  126     1e-28
sp|P34689|GLH1_CAEEL ATP-dependent RNA helicase glh-1 OS=Caenorha...  126     1e-28
sp|Q54QS3|DDX3_DICDI Probable ATP-dependent RNA helicase ddx3 OS=...  125     1e-28
sp|Q6C799|DBP8_YARLI ATP-dependent RNA helicase DBP8 OS=Yarrowia ...  122     1e-28
sp|Q65N62|CSHA_BACLD DEAD-box ATP-dependent RNA helicase CshA OS=...  123     2e-28
sp|Q8Y8N0|CSHA_LISMO ATP-dependent RNA helicase CshA OS=Listeria ...  123     2e-28
sp|A3LRW2|DBP3_PICST ATP-dependent RNA helicase DBP3 OS=Scheffers...  123     2e-28
sp|Q9ZRZ8|RH28_ARATH DEAD-box ATP-dependent RNA helicase 28 OS=Ar...  125     2e-28
sp|Q84UQ1|RH42_ORYSJ DEAD-box ATP-dependent RNA helicase 42 OS=Or...  125     2e-28
sp|Q6BZ77|DBP3_DEBHA ATP-dependent RNA helicase DBP3 OS=Debaryomy...  123     2e-28
sp|Q6CT46|DBP3_KLULA ATP-dependent RNA helicase DBP3 OS=Kluyverom...  122     3e-28
sp|P0CQ76|DBP2_CRYNJ ATP-dependent RNA helicase DBP2-A OS=Cryptoc...  122     4e-28
sp|P0CQ77|DBP2_CRYNB ATP-dependent RNA helicase DBP2-A OS=Cryptoc...  122     4e-28
sp|Q4IF76|DBP2_GIBZE ATP-dependent RNA helicase DBP2 OS=Gibberell...  122     4e-28
sp|Q9NXZ2|DDX43_HUMAN Probable ATP-dependent RNA helicase DDX43 O...  123     4e-28
sp|P46942|DB10_NICSY ATP-dependent RNA helicase-like protein DB10...  123     4e-28
sp|A6SCT6|DBP3_BOTFB ATP-dependent RNA helicase dbp3 OS=Botryotin...  123     4e-28
sp|A2QFL3|DBP3_ASPNC ATP-dependent RNA helicase dbp3 OS=Aspergill...  122     4e-28
sp|Q8Y7M8|DBPA_LISMO ATP-dependent RNA helicase DbpA OS=Listeria ...  121     6e-28
sp|Q9HGM5|DBP8_SCHPO ATP-dependent RNA helicase dbp8 OS=Schizosac...  121     6e-28
sp|Q4WH83|DBP3_ASPFU ATP-dependent RNA helicase dbp3 OS=Aspergill...  121     6e-28
sp|Q10202|DBP3_SCHPO ATP-dependent RNA helicase dbp3 OS=Schizosac...  121     9e-28
sp|P0CQ98|PRP5_CRYNJ Pre-mRNA-processing ATP-dependent RNA helica...  123     1e-27
sp|P0CQ99|PRP5_CRYNB Pre-mRNA-processing ATP-dependent RNA helica...  123     1e-27
sp|Q5N7W4|RH30_ORYSJ DEAD-box ATP-dependent RNA helicase 30 OS=Or...  122     1e-27
sp|A6SFV4|DBP8_BOTFB ATP-dependent RNA helicase dbp8 OS=Botryotin...  121     2e-27
sp|A7EYW0|DBP3_SCLS1 ATP-dependent RNA helicase dbp3 OS=Sclerotin...  121     2e-27
sp|Q7A0D2|CSHA_STAAW DEAD-box ATP-dependent RNA helicase CshA OS=...  120     2e-27
sp|Q6G7M9|CSHA_STAAS DEAD-box ATP-dependent RNA helicase CshA OS=...  120     2e-27
sp|Q6GEZ3|CSHA_STAAR DEAD-box ATP-dependent RNA helicase CshA OS=...  120     2e-27
sp|Q7A4G0|CSHA_STAAN DEAD-box ATP-dependent RNA helicase CshA OS=...  120     2e-27
sp|Q99SH6|CSHA_STAAM DEAD-box ATP-dependent RNA helicase CshA OS=...  120     2e-27
sp|Q5HEB9|CSHA_STAAC DEAD-box ATP-dependent RNA helicase CshA OS=...  120     2e-27
sp|Q2YUH3|CSHA_STAAB DEAD-box ATP-dependent RNA helicase CshA OS=...  120     2e-27
sp|Q2FWH5|CSHA_STAA8 DEAD-box ATP-dependent RNA helicase CshA OS=...  120     2e-27
sp|Q2FF45|CSHA_STAA3 DEAD-box ATP-dependent RNA helicase CshA OS=...  120     2e-27
sp|A1C5V3|DBP3_ASPCL ATP-dependent RNA helicase dbp3 OS=Aspergill...  120     2e-27
sp|Q4I662|DBP8_GIBZE ATP-dependent RNA helicase DBP8 OS=Gibberell...  120     3e-27
sp|Q0INC5|RH28_ORYSJ DEAD-box ATP-dependent RNA helicase 28 OS=Or...  121     3e-27
sp|Q0U8V9|DBP8_PHANO ATP-dependent RNA helicase DBP8 OS=Phaeospha...  119     3e-27
sp|Q9SQV1|RH40_ARATH DEAD-box ATP-dependent RNA helicase 40 OS=Ar...  121     3e-27
sp|A7E436|DBP8_SCLS1 ATP-dependent RNA helicase dbp8 OS=Sclerotin...  119     3e-27
sp|A1DG51|DBP3_NEOFI ATP-dependent RNA helicase dbp3 OS=Neosartor...  119     4e-27
sp|Q49Z29|CSHA_STAS1 DEAD-box ATP-dependent RNA helicase CshA OS=...  119     5e-27
sp|Q2UMH8|DBP3_ASPOR ATP-dependent RNA helicase dbp3 OS=Aspergill...  118     6e-27
sp|Q8L4E9|RH36_ORYSJ DEAD-box ATP-dependent RNA helicase 36 OS=Or...  118     7e-27
sp|Q59W52|PRP28_CANAL Pre-mRNA-splicing ATP-dependent RNA helicas...  119     9e-27
sp|P0CQ92|DRS1_CRYNJ ATP-dependent RNA helicase DRS1 OS=Cryptococ...  119     1e-26
sp|Q5HK76|HSDR_STAEQ Type I restriction enzyme SepRPIP endonuclea...  120     1e-26
sp|A1D6X9|DBP8_NEOFI ATP-dependent RNA helicase dbp8 OS=Neosartor...  118     1e-26
sp|P0CQ93|DRS1_CRYNB ATP-dependent RNA helicase DRS1 OS=Cryptococ...  119     1e-26
sp|Q887N8|RHLB_PSESM ATP-dependent RNA helicase RhlB OS=Pseudomon...  116     1e-26
sp|Q88NB7|RHLB_PSEPK ATP-dependent RNA helicase RhlB OS=Pseudomon...  116     1e-26
sp|A5DU73|PRP28_LODEL Pre-mRNA-splicing ATP-dependent RNA helicas...  118     1e-26
sp|Q4JG17|VASAL_PENVA Probable ATP-dependent RNA helicase vasa-li...  119     1e-26
sp|A5DF03|PRP28_PICGU Pre-mRNA-splicing ATP-dependent RNA helicas...  118     1e-26
sp|Q2GUI4|DBP3_CHAGB ATP-dependent RNA helicase DBP3 OS=Chaetomiu...  118     1e-26
sp|Q4L7W0|CSHA_STAHJ DEAD-box ATP-dependent RNA helicase CshA OS=...  117     1e-26
sp|Q9HXE5|RHLB_PSEAE ATP-dependent RNA helicase RhlB OS=Pseudomon...  115     2e-26
sp|Q02S21|RHLB_PSEAB ATP-dependent RNA helicase RhlB OS=Pseudomon...  115     2e-26
sp|B7UUT0|RHLB_PSEA8 ATP-dependent RNA helicase RhlB OS=Pseudomon...  115     2e-26
sp|Q1DMX8|PRP28_COCIM Pre-mRNA-splicing ATP-dependent RNA helicas...  118     2e-26
sp|Q9Y6V7|DDX49_HUMAN Probable ATP-dependent RNA helicase DDX49 O...  116     2e-26
sp|P21693|DBPA_ECOLI ATP-dependent RNA helicase DbpA OS=Escherich...  116     2e-26
sp|Q81DF9|CSHE_BACCR DEAD-box ATP-dependent RNA helicase CshE OS=...  116     2e-26
sp|Q6BLU9|PRP28_DEBHA Pre-mRNA-splicing ATP-dependent RNA helicas...  117     3e-26
sp|O02494|IF4A_CRYPV Eukaryotic initiation factor 4A OS=Cryptospo...  114     4e-26
sp|Q4PEX7|DBP8_USTMA ATP-dependent RNA helicase DBP8 OS=Ustilago ...  116     4e-26
sp|A5DKW3|DRS1_PICGU ATP-dependent RNA helicase DRS1 OS=Meyerozym...  117     5e-26
sp|Q5HME0|CSHA_STAEQ DEAD-box ATP-dependent RNA helicase CshA OS=...  116     5e-26
sp|Q5RC67|DDX23_PONAB Probable ATP-dependent RNA helicase DDX23 O...  117     5e-26
sp|Q9BUQ8|DDX23_HUMAN Probable ATP-dependent RNA helicase DDX23 O...  117     5e-26
sp|P93008|RH21_ARATH DEAD-box ATP-dependent RNA helicase 21 OS=Ar...  117     5e-26
sp|P0CQ88|PRP28_CRYNJ Pre-mRNA-splicing ATP-dependent RNA helicas...  117     7e-26
sp|P0CQ89|PRP28_CRYNB Pre-mRNA-splicing ATP-dependent RNA helicas...  117     7e-26
sp|P27639|IF4A_CAEEL Eukaryotic initiation factor 4A OS=Caenorhab...  114     7e-26
sp|Q4WEB4|FAL1_ASPFU ATP-dependent RNA helicase fal1 OS=Aspergill...  114     7e-26
sp|Q54KG1|DDX41_DICDI Probable ATP-dependent RNA helicase ddx41 O...  116     8e-26
sp|Q53RK8|RH21_ORYSJ DEAD-box ATP-dependent RNA helicase 21 OS=Or...  116     9e-26
sp|Q8SR63|RRP3_ENCCU ATP-dependent rRNA helicase RRP3 OS=Encephal...  113     9e-26
sp|Q8CRP6|CSHA_STAES DEAD-box ATP-dependent RNA helicase CshA OS=...  115     9e-26
sp|Q2UAK1|FAL1_ASPOR ATP-dependent RNA helicase fal1 OS=Aspergill...  113     1e-25
sp|Q5B3H7|DBP8_EMENI ATP-dependent RNA helicase dbp8 OS=Emericell...  115     1e-25
sp|Q9Z6C9|CSHA_LIMRT ATP-dependent RNA helicase CshA OS=Limosilac...  114     1e-25
sp|Q5AUL4|FAL1_EMENI ATP-dependent RNA helicase fal1 OS=Emericell...  113     1e-25
sp|Q58083|H669_METJA Probable ATP-dependent RNA helicase MJ0669 O...  112     1e-25
sp|Q1DTB3|FAL1_COCIM ATP-dependent RNA helicase FAL1 OS=Coccidioi...  113     1e-25
sp|Q0CAS8|FAL1_ASPTN ATP-dependent RNA helicase fal1 OS=Aspergill...  113     1e-25
sp|A5AAE5|FAL1_ASPNC ATP-dependent RNA helicase fal1 OS=Aspergill...  113     1e-25
sp|A1C595|FAL1_ASPCL ATP-dependent RNA helicase fal1 OS=Aspergill...  113     1e-25
sp|A1CKJ0|DBP8_ASPCL ATP-dependent RNA helicase dbp8 OS=Aspergill...  114     1e-25
sp|Q2GWJ5|FAL1_CHAGB ATP-dependent RNA helicase FAL1 OS=Chaetomiu...  112     1e-25
sp|Q5U526|I4A3A_XENLA Eukaryotic initiation factor 4A-III-A OS=Xe...  113     1e-25
sp|A1D071|FAL1_NEOFI ATP-dependent RNA helicase fal1 OS=Neosartor...  112     1e-25
sp|Q91VC3|IF4A3_MOUSE Eukaryotic initiation factor 4A-III OS=Mus ...  112     2e-25
sp|A6QSQ0|FAL1_AJECN ATP-dependent RNA helicase FAL1 OS=Ajellomyc...  113     2e-25
sp|Q3B8Q2|IF4A3_RAT Eukaryotic initiation factor 4A-III OS=Rattus...  112     2e-25
sp|A6M931|IF4A3_PIG Eukaryotic initiation factor 4A-III OS=Sus sc...  112     2e-25
sp|Q2NL22|IF4A3_BOVIN Eukaryotic initiation factor 4A-III OS=Bos ...  112     2e-25
sp|Q6CX73|FAL1_KLULA ATP-dependent RNA helicase FAL1 OS=Kluyverom...  112     2e-25
sp|Q4R3Q1|IF4A3_MACFA Eukaryotic initiation factor 4A-III OS=Maca...  112     2e-25
sp|P38919|IF4A3_HUMAN Eukaryotic initiation factor 4A-III OS=Homo...  112     2e-25
sp|B7ZTW1|IF4A3_XENTR Eukaryotic initiation factor 4A-III OS=Xeno...  112     2e-25
sp|Q99MJ9|DDX50_MOUSE ATP-dependent RNA helicase DDX50 OS=Mus mus...  115     2e-25
sp|B5DG42|IF4A3_SALSA Eukaryotic initiation factor 4A-III OS=Salm...  112     2e-25
sp|A7EM88|FAL1_SCLS1 ATP-dependent RNA helicase fal1 OS=Sclerotin...  112     3e-25
sp|Q6FW42|DRS1_CANGA ATP-dependent RNA helicase DRS1 OS=Candida g...  115     3e-25
sp|O42226|I4A3B_XENLA Eukaryotic initiation factor 4A-III-B OS=Xe...  112     3e-25
sp|Q55BR9|DDX49_DICDI Probable ATP-dependent RNA helicase ddx49 O...  113     3e-25
sp|B5FZY7|IF4A3_TAEGU Eukaryotic initiation factor 4A-III OS=Taen...  112     3e-25
sp|Q5BCU6|PRP28_EMENI Pre-mRNA-splicing ATP-dependent RNA helicas...  115     3e-25
sp|Q5ZM36|IF4A3_CHICK Eukaryotic initiation factor 4A-III OS=Gall...  112     3e-25
sp|Q9P735|FAL1_NEUCR ATP-dependent RNA helicase fal-1 OS=Neurospo...  112     3e-25
sp|A4QU31|FAL1_PYRO7 ATP-dependent RNA helicase FAL1 OS=Pyricular...  112     3e-25
sp|Q1E0Z3|DBP8_COCIM ATP-dependent RNA helicase DBP8 OS=Coccidioi...  113     3e-25
sp|Q4P184|FAL1_USTMA ATP-dependent RNA helicase FAL1 OS=Ustilago ...  111     3e-25
sp|Q9BQ39|DDX50_HUMAN ATP-dependent RNA helicase DDX50 OS=Homo sa...  114     3e-25
sp|Q2UKX3|DBP8_ASPOR ATP-dependent RNA helicase dbp8 OS=Aspergill...  112     4e-25
sp|Q4WPE9|PRP28_ASPFU Pre-mRNA-splicing ATP-dependent RNA helicas...  114     4e-25
sp|Q0UAT0|FAL1_PHANO ATP-dependent RNA helicase FAL1 OS=Phaeospha...  111     4e-25
sp|A5DS77|DBP2_LODEL ATP-dependent RNA helicase DBP2 OS=Lodderomy...  113     4e-25
sp|A3LNL1|PRP28_PICST Pre-mRNA-splicing ATP-dependent RNA helicas...  112     4e-25
sp|O01836|GLH3_CAEEL ATP-dependent RNA helicase glh-3 OS=Caenorha...  114     5e-25
sp|Q4WXW1|DBP8_ASPFU ATP-dependent RNA helicase dbp8 OS=Aspergill...  113     5e-25
sp|Q4IAA0|FAL1_GIBZE ATP-dependent RNA helicase FAL1 OS=Gibberell...  111     5e-25
sp|A1CX72|PRP28_NEOFI Pre-mRNA-splicing ATP-dependent RNA helicas...  114     5e-25
sp|Q86XP3|DDX42_HUMAN ATP-dependent RNA helicase DDX42 OS=Homo sa...  114     5e-25
sp|Q6CEB8|DRS1_YARLI ATP-dependent RNA helicase DRS1 OS=Yarrowia ...  114     5e-25
sp|A7EGG4|PRP28_SCLS1 Pre-mRNA-splicing ATP-dependent RNA helicas...  114     5e-25
sp|Q810A7|DDX42_MOUSE ATP-dependent RNA helicase DDX42 OS=Mus mus...  114     6e-25
sp|Q94A52|RH2_ARATH Eukaryotic initiation factor 4A-III homolog O...  111     7e-25
sp|P41381|IF4A8_TOBAC Eukaryotic initiation factor 4A-8 OS=Nicoti...  111     7e-25
sp|Q5ACK7|DRS1_CANAL ATP-dependent RNA helicase DRS1 OS=Candida a...  113     7e-25
sp|Q40469|IF4A6_TOBAC Eukaryotic initiation factor 4A-6 (Fragment...  107     8e-25
sp|Q26696|DDX17_TRYBB Putative DEAD-box RNA helicase HEL64 OS=Try...  112     8e-25
sp|Q0V1Z7|DRS1_PHANO ATP-dependent RNA helicase DRS1 OS=Phaeospha...  113     8e-25
sp|Q4FZF3|DDX49_MOUSE Probable ATP-dependent RNA helicase DDX49 O...  112     8e-25
sp|Q10055|FAL1_SCHPO ATP-dependent RNA helicase fal1 OS=Schizosac...  110     9e-25
sp|A4R8G3|DBP8_PYRO7 ATP-dependent RNA helicase DBP8 OS=Pyricular...  112     1e-24
sp|A6S4N4|FAL1_BOTFB ATP-dependent RNA helicase fal1 OS=Botryotin...  110     1e-24
sp|Q7SEL0|PRP28_NEUCR Pre-mRNA-splicing ATP-dependent RNA helicas...  113     1e-24
sp|Q10I26|IF43B_ORYSJ Eukaryotic initiation factor 4A-III homolog...  110     1e-24
sp|Q5VNM3|IF43A_ORYSJ Eukaryotic initiation factor 4A-III homolog...  110     1e-24
sp|P41380|IF4A3_NICPL Eukaryotic initiation factor 4A-3 OS=Nicoti...  110     1e-24
sp|P41382|IF410_TOBAC Eukaryotic initiation factor 4A-10 OS=Nicot...  110     1e-24
sp|Q91VN6|DDX41_MOUSE Probable ATP-dependent RNA helicase DDX41 O...  112     1e-24
sp|Q40467|IF414_TOBAC Eukaryotic initiation factor 4A-14 OS=Nicot...  110     1e-24
sp|Q2UH00|PRP28_ASPOR Pre-mRNA-splicing ATP-dependent RNA helicas...  113     1e-24
sp|Q9UJV9|DDX41_HUMAN Probable ATP-dependent RNA helicase DDX41 O...  112     1e-24
sp|Q0CLX0|PRP28_ASPTN Pre-mRNA-splicing ATP-dependent RNA helicas...  113     1e-24
sp|P32892|DRS1_YEAST ATP-dependent RNA helicase DRS1 OS=Saccharom...  113     1e-24
sp|A7A0P8|DRS1_YEAS7 ATP-dependent RNA helicase DRS1 OS=Saccharom...  113     1e-24
sp|Q5R7D1|DDX42_PONAB ATP-dependent RNA helicase DDX42 OS=Pongo a...  113     1e-24
sp|Q9NR30|DDX21_HUMAN Nucleolar RNA helicase 2 OS=Homo sapiens OX...  112     1e-24
sp|Q40468|IF415_TOBAC Eukaryotic initiation factor 4A-15 OS=Nicot...  110     1e-24
sp|A6RJA2|PRP28_BOTFB Pre-mRNA-splicing ATP-dependent RNA helicas...  113     1e-24
sp|P41379|IF4A2_NICPL Eukaryotic initiation factor 4A-2 OS=Nicoti...  110     2e-24
sp|Q9JIK5|DDX21_MOUSE Nucleolar RNA helicase 2 OS=Mus musculus OX...  112     2e-24
sp|Q7ZY47|DDX42_XENLA ATP-dependent RNA helicase DDX42 OS=Xenopus...  112     2e-24
sp|A5AA68|DBP8_ASPNC ATP-dependent RNA helicase dbp8 OS=Aspergill...  111     2e-24
sp|Q4P9P3|DRS1_USTMA ATP-dependent RNA helicase DRS1 OS=Ustilago ...  112     2e-24
sp|Q7ZVA6|IF4A3_DANRE Eukaryotic initiation factor 4A-III OS=Dani...  109     2e-24
sp|A4QYM6|DRS1_PYRO7 ATP-dependent RNA helicase DRS1 OS=Pyricular...  112     2e-24
sp|A3LQW7|DBP2_PICST ATP-dependent RNA helicase DBP2 OS=Scheffers...  111     2e-24
sp|A2QIL2|PRP28_ASPNC Pre-mRNA-splicing ATP-dependent RNA helicas...  112     2e-24
sp|P54509|YQHH_BACSU Uncharacterized ATP-dependent helicase YqhH ...  111     2e-24
sp|Q3B8Q1|DDX21_RAT Nucleolar RNA helicase 2 OS=Rattus norvegicus...  112     2e-24
sp|Q40471|IF4A9_TOBAC Eukaryotic initiation factor 4A-9 OS=Nicoti...  109     2e-24
sp|Q7FGZ2|RH1_ARATH DEAD-box ATP-dependent RNA helicase 1 OS=Arab...  111     3e-24
sp|Q40470|IF4A7_TOBAC Eukaryotic initiation factor 4A-7 OS=Nicoti...  109     3e-24
sp|Q55D61|IF4A_DICDI Eukaryotic initiation factor 4A OS=Dictyoste...  109     3e-24
sp|Q9VHS8|IF4A3_DROME Eukaryotic initiation factor 4A-III OS=Dros...  109     3e-24
sp|P0C2N8|DRS1_NEUCR ATP-dependent RNA helicase drs1 OS=Neurospor...  112     3e-24
sp|Q9LU46|RH35_ARATH DEAD-box ATP-dependent RNA helicase 35 OS=Ar...  111     3e-24
sp|Q650T9|RH7_ORYSJ DEAD-box ATP-dependent RNA helicase 7 OS=Oryz...  111     4e-24
sp|Q5F485|DDX42_CHICK ATP-dependent RNA helicase DDX42 OS=Gallus ...  112     4e-24
sp|Q75F95|DRS1_EREGS ATP-dependent RNA helicase DRS1 OS=Eremothec...  111     5e-24
sp|Q4PDT1|DBP3_USTMA ATP-dependent RNA helicase DBP3 OS=Ustilago ...  110     5e-24
sp|Q6C347|FAL1_YARLI ATP-dependent RNA helicase FAL1 OS=Yarrowia ...  108     5e-24
sp|A7TJM9|DRS1_VANPO ATP-dependent RNA helicase DRS1 OS=Vanderwal...  111     5e-24
sp|Q6CJV1|DRS1_KLULA ATP-dependent RNA helicase DRS1 OS=Kluyverom...  111     5e-24
sp|Q9CAI7|IF4A3_ARATH Eukaryotic initiation factor 4A-3 OS=Arabid...  108     5e-24
sp|Q6BTL5|DRS1_DEBHA ATP-dependent RNA helicase DRS1 OS=Debaryomy...  111     5e-24
sp|A1CHL3|PRP28_ASPCL Pre-mRNA-splicing ATP-dependent RNA helicas...  111     6e-24
sp|Q921N6|DDX27_MOUSE Probable ATP-dependent RNA helicase DDX27 O...  111     6e-24
sp|A5E6W6|RRP3_LODEL ATP-dependent rRNA helicase RRP3 OS=Lodderom...  109     6e-24
sp|P35683|IF4A1_ORYSJ Eukaryotic initiation factor 4A-1 OS=Oryza ...  108     6e-24
sp|Q9SZB4|RH43_ARATH Putative DEAD-box ATP-dependent RNA helicase...  109     7e-24
sp|P41376|IF4A1_ARATH Eukaryotic initiation factor 4A-1 OS=Arabid...  108     7e-24
sp|Q6CJU1|DBP5_KLULA ATP-dependent RNA helicase DBP5 OS=Kluyverom...  109     8e-24
sp|Q6Z2Z4|IF4A3_ORYSJ Eukaryotic initiation factor 4A-3 OS=Oryza ...  107     8e-24
sp|A5DDF4|PRP5_PICGU Pre-mRNA-processing ATP-dependent RNA helica...  110     1e-23
sp|Q41741|IF4A_MAIZE Eukaryotic initiation factor 4A OS=Zea mays ...  107     1e-23
sp|A3LQ55|PRP5_PICST Pre-mRNA-processing ATP-dependent RNA helica...  110     1e-23
sp|Q07886|DDX49_DROME Probable ATP-dependent RNA helicase Dbp45A ...  109     1e-23
sp|Q2HEB0|PRP28_CHAGB Pre-mRNA-splicing ATP-dependent RNA helicas...  109     1e-23
sp|A7TEF4|FAL1_VANPO ATP-dependent RNA helicase FAL1 OS=Vanderwal...  107     1e-23
sp|P41377|IF4A2_ARATH Eukaryotic initiation factor 4A-2 OS=Arabid...  107     1e-23
sp|Q5K5B6|RH57_ORYSJ DEAD-box ATP-dependent RNA helicase 57 OS=Or...  108     1e-23
sp|Q7RYZ7|DBP8_NEUCR ATP-dependent RNA helicase dbp-8 OS=Neurospo...  109     1e-23
sp|Q40465|IF411_TOBAC Eukaryotic initiation factor 4A-11 OS=Nicot...  107     2e-23
sp|A3LSN3|DRS1_PICST ATP-dependent RNA helicase DRS1 OS=Scheffers...  109     2e-23
sp|Q755W0|FAL1_EREGS ATP-dependent RNA helicase FAL1 OS=Eremothec...  106     2e-23
sp|Q8H0U8|RH42_ARATH DEAD-box ATP-dependent RNA helicase 42 OS=Ar...  109     2e-23
sp|P41378|IF4A_WHEAT Eukaryotic initiation factor 4A OS=Triticum ...  106     2e-23
sp|Q4I7F9|PRP28_GIBZE Pre-mRNA-splicing ATP-dependent RNA helicas...  109     2e-23
sp|A5E058|PRP5_LODEL Pre-mRNA-processing ATP-dependent RNA helica...  109     2e-23
sp|Q9FZ92|RH44_ARATH Putative DEAD-box ATP-dependent RNA helicase...  108     3e-23
sp|Q47281|T1RE_ECOLX Type I restriction enzyme EcoEI endonuclease...  108     5e-23
sp|Q553B1|DDX46_DICDI ATP-dependent RNA helicase ddx46 OS=Dictyos...  108     5e-23
sp|Q09747|DBP5_SCHPO ATP-dependent RNA helicase dbp5 OS=Schizosac...  106     5e-23
sp|Q0UWC8|PRP28_PHANO Pre-mRNA-splicing ATP-dependent RNA helicas...  107     5e-23
sp|Q4I830|DRS1_GIBZE ATP-dependent RNA helicase DRS1 OS=Gibberell...  107     6e-23
sp|Q84TG1|RH57_ARATH DEAD-box ATP-dependent RNA helicase 57 OS=Ar...  106     7e-23
sp|Q12099|FAL1_YEAST ATP-dependent RNA helicase FAL1 OS=Saccharom...  104     8e-23
sp|A6ZXY5|FAL1_YEAS7 ATP-dependent RNA helicase FAL1 OS=Saccharom...  104     8e-23
sp|A5DWJ1|FAL1_LODEL ATP-dependent RNA helicase FAL1 OS=Lodderomy...  104     9e-23
sp|P0CR02|DBP8_CRYNJ ATP-dependent RNA helicase DBP8 OS=Cryptococ...  106     1e-22
sp|P0CR03|DBP8_CRYNB ATP-dependent RNA helicase DBP8 OS=Cryptococ...  106     1e-22
sp|Q9Y2R4|DDX52_HUMAN Probable ATP-dependent RNA helicase DDX52 O...  106     1e-22
sp|Q0UCB9|DBP5_PHANO ATP-dependent RNA helicase DBP5 OS=Phaeospha...  105     1e-22
sp|Q0E3X4|RH35A_ORYSJ DEAD-box ATP-dependent RNA helicase 35A OS=...  106     1e-22
sp|Q9C8J1|RH34_ARATH DEAD-box ATP-dependent RNA helicase 34 OS=Ar...  104     1e-22
sp|Q9Y7T7|PRP28_SCHPO Pre-mRNA-splicing ATP-dependent RNA helicas...  106     2e-22
sp|Q0CNX1|DBP8_ASPTN ATP-dependent RNA helicase dbp8 OS=Aspergill...  105     2e-22
sp|Q99PT0|DDX52_RAT Probable ATP-dependent RNA helicase DDX52 OS=...  105     2e-22
sp|Q75BS4|DHH1_EREGS ATP-dependent RNA helicase DHH1 OS=Eremothec...  104     2e-22
sp|Q4P7Z8|DBP5_USTMA ATP-dependent RNA helicase DBP5 OS=Ustilago ...  104     2e-22
sp|A6SBT4|DBP5_BOTFB ATP-dependent RNA helicase dbp5 OS=Botryotin...  104     2e-22
sp|Q2UQI6|DRS1_ASPOR ATP-dependent RNA helicase drs1 OS=Aspergill...  106     2e-22
sp|P0CQ72|FAL1_CRYNJ ATP-dependent RNA helicase FAL1 OS=Cryptococ...  103     2e-22
sp|P0CQ73|FAL1_CRYNB ATP-dependent RNA helicase FAL1 OS=Cryptococ...  103     2e-22
sp|Q41382|RH7_SPIOL DEAD-box ATP-dependent RNA helicase 7 OS=Spin...  105     3e-22
sp|Q93ZG7|RH38_ARATH DEAD-box ATP-dependent RNA helicase 38 OS=Ar...  104     3e-22
sp|A6RUH2|DRS1_BOTFB ATP-dependent RNA helicase drs1 OS=Botryotin...  105     3e-22
sp|Q86TM3|DDX53_HUMAN Probable ATP-dependent RNA helicase DDX53 O...  105     3e-22
sp|A5D7C1|DDX52_BOVIN Probable ATP-dependent RNA helicase DDX52 O...  105     3e-22
sp|Q8K301|DDX52_MOUSE Probable ATP-dependent RNA helicase DDX52 O...  105     3e-22
sp|A7F4L5|DRS1_SCLS1 ATP-dependent RNA helicase drs1 OS=Sclerotin...  105     3e-22
sp|A3GFV3|FAL1_PICST ATP-dependent RNA helicase FAL1 OS=Scheffers...  102     4e-22
sp|Q5ADL0|PRP5_CANAL Pre-mRNA-processing ATP-dependent RNA helica...  105     4e-22
sp|P0CQ86|DBP5_CRYNJ ATP-dependent RNA helicase DBP5 OS=Cryptococ...  104     4e-22
sp|Q0JM17|RH56_ORYSJ DEAD-box ATP-dependent RNA helicase 56 OS=Or...  103     4e-22
sp|P0CQ90|MAK5_CRYNJ ATP-dependent RNA helicase MAK5 OS=Cryptococ...  105     4e-22
sp|Q5Z6G5|RH35B_ORYSJ DEAD-box ATP-dependent RNA helicase 35B OS=...  104     5e-22
sp|Q9GZR7|DDX24_HUMAN ATP-dependent RNA helicase DDX24 OS=Homo sa...  105     5e-22
sp|Q5JK84|RH15_ORYSJ DEAD-box ATP-dependent RNA helicase 15 OS=Or...  102     5e-22
sp|P0CQ87|DBP5_CRYNB ATP-dependent RNA helicase DBP5 OS=Cryptococ...  104     5e-22
sp|A5DE68|FAL1_PICGU ATP-dependent RNA helicase FAL1 OS=Meyerozym...  102     5e-22
sp|Q4WRV2|DRS1_ASPFU ATP-dependent RNA helicase drs1 OS=Aspergill...  104     5e-22
sp|Q6FJG1|FAL1_CANGA ATP-dependent RNA helicase FAL1 OS=Candida g...  102     6e-22
sp|Q59MW2|DBP6_CANAL ATP-dependent RNA helicase DBP6 OS=Candida a...  104     6e-22
sp|Q09775|ROK1_SCHPO ATP-dependent RNA helicase rok1 OS=Schizosac...  103     6e-22
sp|A1D1R8|DRS1_NEOFI ATP-dependent RNA helicase drs1 OS=Neosartor...  104     7e-22
sp|Q9V3C0|DDX41_DROME ATP-dependent RNA helicase abstrakt OS=Dros...  104     7e-22
sp|P0CQ91|MAK5_CRYNB ATP-dependent RNA helicase MAK5 OS=Cryptococ...  104     7e-22
sp|Q6BT27|FAL1_DEBHA ATP-dependent RNA helicase FAL1 OS=Debaryomy...  102     7e-22
sp|Q5RDL2|DDX24_PONAB ATP-dependent RNA helicase DDX24 OS=Pongo a...  104     7e-22
sp|P0CR06|DBP10_CRYNJ ATP-dependent RNA helicase DBP10 OS=Cryptoc...  104     7e-22
sp|P0CR07|DBP10_CRYNB ATP-dependent RNA helicase DBP10 OS=Cryptoc...  104     7e-22
sp|Q6BJX6|DHH1_DEBHA ATP-dependent RNA helicase DHH1 OS=Debaryomy...  103     7e-22
sp|Q1E2B2|DRS1_COCIM ATP-dependent RNA helicase DRS1 OS=Coccidioi...  104     8e-22
sp|Q5AAW3|DHH1_CANAL ATP-dependent RNA helicase DHH1 OS=Candida a...  103     8e-22
sp|Q0CZN5|DRS1_ASPTN ATP-dependent RNA helicase drs1 OS=Aspergill...  104     8e-22
sp|Q54IV3|DDX42_DICDI Probable ATP-dependent RNA helicase ddx42 O...  104     8e-22
sp|Q2HGF7|DBP5_CHAGB ATP-dependent RNA helicase DBP5 OS=Chaetomiu...  102     9e-22
sp|Q10RI7|RH38_ORYSJ DEAD-box ATP-dependent RNA helicase 38 OS=Or...  102     1e-21
sp|O22907|RH24_ARATH DEAD-box ATP-dependent RNA helicase 24 OS=Ar...  103     1e-21
sp|Q2TBP1|DDX25_BOVIN ATP-dependent RNA helicase DDX25 OS=Bos tau...  102     1e-21
sp|A4RIF1|DBP5_PYRO7 ATP-dependent RNA helicase DBP5 OS=Pyricular...  102     1e-21
sp|A1CNV8|DRS1_ASPCL ATP-dependent RNA helicase drs1 OS=Aspergill...  103     1e-21
sp|Q9QY16|DDX25_RAT ATP-dependent RNA helicase DDX25 OS=Rattus no...  102     1e-21
sp|Q2GQ93|DHH1_CHAGB ATP-dependent RNA helicase DHH1 OS=Chaetomiu...  102     1e-21
sp|A7EY76|DBP5_SCLS1 ATP-dependent RNA helicase dbp5 OS=Sclerotin...  102     1e-21
sp|Q6C0X2|DHH1_YARLI ATP-dependent RNA helicase DHH1 OS=Yarrowia ...  102     1e-21
sp|P0CQ80|DHH1_CRYNJ ATP-dependent RNA helicase DHH1 OS=Cryptococ...  103     1e-21
sp|P0CQ81|DHH1_CRYNB ATP-dependent RNA helicase DHH1 OS=Cryptococ...  103     1e-21
sp|Q6CSZ7|DHH1_KLULA ATP-dependent RNA helicase DHH1 OS=Kluyverom...  102     1e-21
sp|A4RMV8|ROK1_PYRO7 ATP-dependent RNA helicase ROK1 OS=Pyricular...  103     2e-21
sp|A6RC50|DBP5_AJECN ATP-dependent RNA helicase DBP5 OS=Ajellomyc...  102     2e-21
sp|Q75C39|DBP5_EREGS ATP-dependent RNA helicase DBP5 OS=Eremothec...  101     2e-21
sp|Q58Z64|DHH1_CRYNH ATP-dependent RNA helicase VAD1 OS=Cryptococ...  102     2e-21
sp|Q8Y755|CSHB_LISMO DEAD-box ATP-dependent RNA helicase CshB OS=...  101     2e-21
sp|Q9QY15|DDX25_MOUSE ATP-dependent RNA helicase DDX25 OS=Mus mus...  101     2e-21
sp|A1CFV3|DBP5_ASPCL ATP-dependent RNA helicase dbp5 OS=Aspergill...  101     2e-21
sp|Q5AVM1|DBP5_EMENI ATP-dependent RNA helicase dbp5 OS=Emericell...  101     3e-21
sp|Q6C7X8|DBP10_YARLI ATP-dependent RNA helicase DBP10 OS=Yarrowi...  102     3e-21
sp|Q9LFN6|RH56_ARATH DEAD-box ATP-dependent RNA helicase 56 OS=Ar...  100     3e-21
sp|Q56XG6|RH15_ARATH DEAD-box ATP-dependent RNA helicase 15 OS=Ar...  100     3e-21
sp|Q4WIN6|DBP5_ASPFU ATP-dependent RNA helicase dbp5 OS=Aspergill...  101     3e-21
sp|A5DZX2|DBP5_LODEL ATP-dependent RNA helicase DBP5 OS=Lodderomy...  101     3e-21
sp|Q5A9Z6|FAL1_CANAL ATP-dependent RNA helicase FAL1 OS=Candida a...  99.9    4e-21
sp|A7TGU7|DHH1_VANPO ATP-dependent RNA helicase DHH1 OS=Vanderwal...  101     4e-21
sp|A3LWX3|DHH1_PICST ATP-dependent RNA helicase DHH1 OS=Scheffers...  101     4e-21
sp|Q4R8K5|IF4A1_MACFA Eukaryotic initiation factor 4A-I OS=Macaca...  99.9    4e-21
sp|P29562|IF4A1_RABIT Eukaryotic initiation factor 4A-I (Fragment...  99.5    5e-21
sp|Q4WCW2|SUB2_ASPFU ATP-dependent RNA helicase sub2 OS=Aspergill...  100     5e-21
sp|A5DIP0|DHH1_PICGU ATP-dependent RNA helicase DHH1 OS=Meyerozym...  101     5e-21
sp|P20449|DBP5_YEAST ATP-dependent RNA helicase DBP5 OS=Saccharom...  100     5e-21
sp|A6ZNQ1|DBP5_YEAS7 ATP-dependent RNA helicase DBP5 OS=Saccharom...  100     5e-21
sp|A2QUY7|DBP5_ASPNC ATP-dependent RNA helicase dbp5 OS=Aspergill...  100     5e-21
sp|P60843|IF4A1_MOUSE Eukaryotic initiation factor 4A-I OS=Mus mu...  99.5    5e-21
sp|P60842|IF4A1_HUMAN Eukaryotic initiation factor 4A-I OS=Homo s...  99.5    5e-21
sp|Q3SZ54|IF4A1_BOVIN Eukaryotic initiation factor 4A-I OS=Bos ta...  99.5    5e-21
sp|Q54TF8|DDX19_DICDI ATP-dependent RNA helicase ddx19 OS=Dictyos...  100     6e-21
sp|A5A6N4|IF4A1_PANTR Eukaryotic initiation factor 4A-I OS=Pan tr...  99.5    6e-21
sp|Q5R5F5|IF4A1_PONAB Eukaryotic initiation factor 4A-I OS=Pongo ...  99.5    6e-21
sp|Q6FKN8|DBP5_CANGA ATP-dependent RNA helicase DBP5 OS=Candida g...  100     7e-21
sp|Q54Y81|DDX23_DICDI ATP-dependent RNA helicase ddx23 OS=Dictyos...  101     7e-21
sp|Q9UHL0|DDX25_HUMAN ATP-dependent RNA helicase DDX25 OS=Homo sa...  99.9    7e-21
sp|Q8RXK6|RH8_ARATH DEAD-box ATP-dependent RNA helicase 8 OS=Arab...  100     7e-21
sp|A1CYG5|DBP5_NEOFI ATP-dependent RNA helicase dbp5 OS=Neosartor...  99.9    8e-21
sp|Q5AJD0|DBP5_CANAL ATP-dependent RNA helicase DBP5 OS=Candida a...  100     8e-21
sp|A4R715|DHH1_PYRO7 ATP-dependent RNA helicase DHH1 OS=Pyricular...  100     8e-21
sp|Q0CBE1|DHH1_ASPTN ATP-dependent RNA helicase dhh1 OS=Aspergill...  99.9    8e-21
sp|Q6BML1|PRP5_DEBHA Pre-mRNA-processing ATP-dependent RNA helica...  101     9e-21
sp|Q1EB85|DBP5_COCIM ATP-dependent RNA helicase DBP5 OS=Coccidioi...  99.9    9e-21
sp|Q10MH8|RH24_ORYSJ DEAD-box ATP-dependent RNA helicase 24 OS=Or...  101     9e-21
sp|A6QUM7|DBP10_AJECN ATP-dependent RNA helicase DBP10 OS=Ajellom...  101     1e-20
sp|Q6C024|PRP28_YARLI Pre-mRNA-splicing ATP-dependent RNA helicas...  100     1e-20
sp|P54475|CSHB_BACSU DEAD-box ATP-dependent RNA helicase CshB OS=...  99.1    1e-20
sp|Q2U5A2|DHH1_ASPOR ATP-dependent RNA helicase dhh1 OS=Aspergill...  99.9    1e-20
sp|Q7S5D9|DHH1_NEUCR ATP-dependent RNA helicase dhh1 OS=Neurospor...  99.9    1e-20
sp|Q0CGJ9|SUB2_ASPTN ATP-dependent RNA helicase sub2 OS=Aspergill...  99.1    1e-20
sp|Q4IPI1|ROK1_GIBZE ATP-dependent RNA helicase ROK1 OS=Gibberell...  100     1e-20
sp|A5DIX5|ROK1_PICGU ATP-dependent RNA helicase ROK1 OS=Meyerozym...  99.9    1e-20
sp|Q6H7S2|RH8_ORYSJ DEAD-box ATP-dependent RNA helicase 8 OS=Oryz...  99.5    1e-20
sp|Q7RZH4|MAK5_NEUCR ATP-dependent RNA helicase mak-5 OS=Neurospo...  100     1e-20
sp|Q09719|DBP10_SCHPO ATP-dependent RNA helicase dbp10 OS=Schizos...  100     1e-20
sp|A4RBS3|SUB2_PYRO7 ATP-dependent RNA helicase SUB2 OS=Pyricular...  98.7    1e-20
sp|P39517|DHH1_YEAST ATP-dependent RNA helicase DHH1 OS=Saccharom...  99.1    1e-20
sp|A6ZXG9|DHH1_YEAS7 ATP-dependent RNA helicase DHH1 OS=Saccharom...  99.1    1e-20
sp|A2QY39|DHH1_ASPNC ATP-dependent RNA helicase dhh1 OS=Aspergill...  99.1    1e-20
sp|Q39189|RH7_ARATH DEAD-box ATP-dependent RNA helicase 7 OS=Arab...  100     1e-20
sp|Q0U6X2|MAK5_PHANO ATP-dependent RNA helicase MAK5 OS=Phaeospha...  100     2e-20
sp|Q55CP6|DDX1_DICDI Probable ATP-dependent RNA helicase ddx1 OS=...  100     2e-20
sp|Q8N8A6|DDX51_HUMAN ATP-dependent RNA helicase DDX51 OS=Homo sa...  99.9    2e-20
sp|Q0U7S9|DHH1_PHANO ATP-dependent RNA helicase DHH1 OS=Phaeospha...  99.1    2e-20
sp|A3LSJ2|DBP6_PICST ATP-dependent RNA helicase DBP6 OS=Scheffers...  99.5    2e-20
sp|Q4R4Y9|IF4A2_MACFA Eukaryotic initiation factor 4A-II OS=Macac...  97.9    2e-20
sp|A1CMQ7|SUB2_ASPCL ATP-dependent RNA helicase sub2 OS=Aspergill...  98.3    2e-20
sp|Q09181|DHH1_SCHPO Putative ATP-dependent RNA helicase ste13 OS...  98.7    2e-20
sp|A6R3R5|IF4A_AJECN ATP-dependent RNA helicase eIF4A OS=Ajellomy...  97.6    2e-20
sp|Q1E5R1|DHH1_COCIM ATP-dependent RNA helicase DHH1 OS=Coccidioi...  98.7    2e-20
sp|P10486|T1R1_ECOLX Type I restriction enzyme EcoR124I/EcoR124II...  100     2e-20
sp|A1DL85|SUB2_NEOFI ATP-dependent RNA helicase sub2 OS=Neosartor...  97.9    2e-20
sp|A6R603|SUB2_AJECN ATP-dependent RNA helicase SUB2 OS=Ajellomyc...  97.9    3e-20
sp|Q6DRI7|DDX51_DANRE ATP-dependent RNA helicase DDX51 OS=Danio r...  99.1    3e-20
sp|Q4P331|IF4A_USTMA ATP-dependent RNA helicase eIF4A OS=Ustilago...  97.6    3e-20
sp|Q4HY71|DBP5_GIBZE ATP-dependent RNA helicase DBP5 OS=Gibberell...  98.3    3e-20
sp|Q2U8K6|DBP5_ASPOR ATP-dependent RNA helicase dbp5 OS=Aspergill...  98.3    3e-20
sp|Q0CDT1|DBP5_ASPTN ATP-dependent RNA helicase dbp5 OS=Aspergill...  98.3    3e-20
sp|Q5VRY0|RH39_ORYSJ DEAD-box ATP-dependent RNA helicase 39 OS=Or...  99.1    3e-20
sp|Q2H4D0|SUB2_CHAGB ATP-dependent RNA helicase SUB2 OS=Chaetomiu...  97.6    3e-20
sp|Q1EB38|DBP10_COCIM ATP-dependent RNA helicase DBP10 OS=Coccidi...  99.5    3e-20
sp|Q6FQU5|DHH1_CANGA ATP-dependent RNA helicase DHH1 OS=Candida g...  97.9    3e-20
sp|A5DBI5|DBP5_PICGU ATP-dependent RNA helicase DBP5 OS=Meyerozym...  97.9    3e-20
sp|Q9Y7C4|ROK1_CANAL ATP-dependent RNA helicase CHR1 OS=Candida a...  98.3    3e-20
sp|Q95YF3|CGH1_CAEEL ATP-dependent RNA helicase cgh-1 OS=Caenorha...  97.2    4e-20
sp|A1CJT5|IF4A_ASPCL ATP-dependent RNA helicase eIF4A OS=Aspergil...  96.8    4e-20
sp|Q6BRE4|DBP5_DEBHA ATP-dependent RNA helicase DBP5 OS=Debaryomy...  97.9    4e-20
sp|Q2UPY3|IF4A_ASPOR ATP-dependent RNA helicase eIF4A OS=Aspergil...  97.2    4e-20
sp|Q0CXD0|IF4A_ASPTN ATP-dependent RNA helicase eIF4A OS=Aspergil...  96.8    4e-20
sp|Q7RV88|IF4A_NEUCR ATP-dependent RNA helicase eIF4A OS=Neurospo...  96.8    4e-20
sp|A4QVP2|IF4A_PYRO7 ATP-dependent RNA helicase eIF4A OS=Pyricula...  96.8    4e-20
sp|Q6C3X7|DBP5_YARLI ATP-dependent RNA helicase DBP5 OS=Yarrowia ...  97.6    4e-20
sp|Q641Y8|DDX1_RAT ATP-dependent RNA helicase DDX1 OS=Rattus norv...  98.7    4e-20


>sp|Q96C10|DHX58_HUMAN ATP-dependent RNA helicase DHX58 OS=Homo 
sapiens OX=9606 GN=DHX58 PE=1 SV=1
Length=678

 Score = 894 bits (2311),  Expect = 0.0, Method: Composition-based stats.
 Identities = 678/678 (100%), Positives = 678/678 (100%), Gaps = 0/678 (0%)

Query  1    MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV  60
            MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV
Sbjct  1    MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV  60

Query  61   TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
            TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV
Sbjct  61   TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120

Query  121  ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG  180
            ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG
Sbjct  121  ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG  180

Query  181  AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI  240
            AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI
Sbjct  181  AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI  240

Query  241  HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV  300
            HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV
Sbjct  241  HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV  300

Query  301  DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQR  360
            DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQR
Sbjct  301  DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQR  360

Query  361  QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ  420
            QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ
Sbjct  361  QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ  420

Query  421  QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYA  480
            QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYA
Sbjct  421  QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYA  480

Query  481  FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR  540
            FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR
Sbjct  481  FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR  540

Query  541  ENQRQQFPVEHVQLLCINCMVAVGHGSDLRKVEGTHHVNVNPNFSNYYNVSRDPVVINKV  600
            ENQRQQFPVEHVQLLCINCMVAVGHGSDLRKVEGTHHVNVNPNFSNYYNVSRDPVVINKV
Sbjct  541  ENQRQQFPVEHVQLLCINCMVAVGHGSDLRKVEGTHHVNVNPNFSNYYNVSRDPVVINKV  600

Query  601  FKDWKPGGVISCRNCGEVWGLQMIYKSVKLPVLKVRSMLLETPQGRIQAKKWSRVPFSVP  660
            FKDWKPGGVISCRNCGEVWGLQMIYKSVKLPVLKVRSMLLETPQGRIQAKKWSRVPFSVP
Sbjct  601  FKDWKPGGVISCRNCGEVWGLQMIYKSVKLPVLKVRSMLLETPQGRIQAKKWSRVPFSVP  660

Query  661  DFDFLQHCAENLSDLSLD  678
            DFDFLQHCAENLSDLSLD
Sbjct  661  DFDFLQHCAENLSDLSLD  678


>sp|Q99J87|DHX58_MOUSE ATP-dependent RNA helicase DHX58 OS=Mus 
musculus OX=10090 GN=Dhx58 PE=1 SV=2
Length=678

 Score = 832 bits (2149),  Expect = 0.0, Method: Composition-based stats.
 Identities = 533/678 (79%), Positives = 593/678 (87%), Gaps = 0/678 (0%)

Query  1    MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV  60
            MELR YQWEVI+PALEGKNIIIWLPTGAGKTRAAA+VAKRHLETVD  KVVVLVNRVHLV
Sbjct  1    MELRPYQWEVILPALEGKNIIIWLPTGAGKTRAAAFVAKRHLETVDRGKVVVLVNRVHLV  60

Query  61   TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
            +QH EEFRRMLD  WTVTTLSGDMG RAGFG +AR HDLLICTAELLQ+AL S EE+EHV
Sbjct  61   SQHAEEFRRMLDKHWTVTTLSGDMGSRAGFGLMARSHDLLICTAELLQLALNSSEEDEHV  120

Query  121  ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG  180
            EL  FSLIVVDECHHTHKDTVYN I+S+YLE KL++A+PLPQVLGLTASPGTGGA+KL G
Sbjct  121  ELREFSLIVVDECHHTHKDTVYNTILSRYLEQKLKKAEPLPQVLGLTASPGTGGATKLQG  180

Query  181  AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI  240
            AI+H+LQLCANLDT  IMSP+NC  QL  H+ +PCKQY+LC RR+QDPFGDL+KKLM+QI
Sbjct  181  AIDHILQLCANLDTCHIMSPKNCYSQLLMHNPKPCKQYDLCQRRAQDPFGDLIKKLMNQI  240

Query  241  HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV  300
            H  LEMP+L ++FGTQMYEQQVV+L + AA AGLQEQRVYALHLRRYNDAL IHDTVRA 
Sbjct  241  HQQLEMPDLKQQFGTQMYEQQVVQLCKDAAEAGLQEQRVYALHLRRYNDALFIHDTVRAR  300

Query  301  DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQR  360
            DAL  LQDFY RE  TKTQ++ AE  LL LFDD KN L  LA  GPENPKLEMLE+IL +
Sbjct  301  DALDMLQDFYDRERTTKTQMVRAESWLLKLFDDHKNVLGQLAARGPENPKLEMLERILLK  360

Query  361  QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ  420
            QF S    RGIIFTRTRQ+A SLLLWL+QQ  LQTV I+ Q+LIGAGN+SQSTHMTQ+DQ
Sbjct  361  QFGSPGHTRGIIFTRTRQTASSLLLWLRQQPCLQTVGIKPQMLIGAGNTSQSTHMTQKDQ  420

Query  421  QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYA  480
            QEVIQ+F+DG L+LLVATSVAEEGLDI  CNVVVRYGLLTNEISMVQARGRARA QSVY+
Sbjct  421  QEVIQEFRDGILSLLVATSVAEEGLDIAQCNVVVRYGLLTNEISMVQARGRARAGQSVYS  480

Query  481  FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR  540
            F+ATEGSRE+KREL NEALE LME+AVAAVQKMD  E++AKIRDLQQA+L KRAA+AA R
Sbjct  481  FLATEGSREMKRELTNEALEVLMEKAVAAVQKMDPDEFKAKIRDLQQASLVKRAARAAHR  540

Query  541  ENQRQQFPVEHVQLLCINCMVAVGHGSDLRKVEGTHHVNVNPNFSNYYNVSRDPVVINKV  600
            E Q+ QF  EHVQLLCINCMVAVG+GSDLRKVEGTHHVNVNPNFS YY  S++PVVINKV
Sbjct  541  EIQQGQFLPEHVQLLCINCMVAVGYGSDLRKVEGTHHVNVNPNFSVYYTTSQNPVVINKV  600

Query  601  FKDWKPGGVISCRNCGEVWGLQMIYKSVKLPVLKVRSMLLETPQGRIQAKKWSRVPFSVP  660
            FKDW+PGG I C NCGEVWG QMIYKSV LPVLK+ S+LLETP+G+IQAKKWSRVPFS+P
Sbjct  601  FKDWRPGGTIRCSNCGEVWGFQMIYKSVTLPVLKIGSILLETPRGKIQAKKWSRVPFSIP  660

Query  661  DFDFLQHCAENLSDLSLD  678
             FD LQ C ++LS+LSLD
Sbjct  661  VFDILQDCTQSLSELSLD  678


>sp|Q9BYX4|IFIH1_HUMAN Interferon-induced helicase C domain-containing 
protein 1 OS=Homo sapiens OX=9606 GN=IFIH1 PE=1 SV=3
Length=1025

 Score = 659 bits (1700),  Expect = 0.0, Method: Composition-based stats.
 Identities = 291/717 (41%), Positives = 425/717 (59%), Gaps = 52/717 (7%)

Query  1     MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG----AKVVVLVNR  56
             ++LR YQ EV  PALEGKNIII LPTG+GKTR A Y+AK HL+         KV+VLVN+
Sbjct  306   LQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNK  365

Query  57    VHLVTQ-HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE  115
             V LV Q   +EF+  L   + V  LSGD   +  F  + +  D++I TA++L+ +L + E
Sbjct  366   VLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLE  425

Query  116   --EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQ---------PLPQVL  164
               E+  V+L+ FSLI++DECHHT+K+ VYN IM  YL  KL+  +         PLPQ+L
Sbjct  426   NGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQIL  485

Query  165   GLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRR  224
             GLTASPG GGA+K   A  H+L+LCANLD + I + +    QL+   Q+PCK++ +    
Sbjct  486   GLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIADAT  545

Query  225   SQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHL  284
              +DPF + L ++M +I  + +M  +S  FGTQ YEQ  +++ + AA  G +++RV A HL
Sbjct  546   REDPFKEKLLEIMTRIQTYCQMSPMS-DFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHL  604

Query  285   RRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQIL-----------------------  321
             R+YN+AL I+DT+R +DA   L+ FY+ E   K  ++                       
Sbjct  605   RKYNEALQINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDSDEGGDDEYCDGDEDEDDLK  664

Query  322   ------CAERRLLALFDDRKNELAHLATHG-PENPKLEMLEKILQRQF-SSSNSPRGIIF  373
                     +R L+ LF +    L  LA +   EN KL  L   +  Q+  +  S RGIIF
Sbjct  665   KPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARGIIF  724

Query  374   TRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN  433
             T+TRQSA++L  W+ + +    V ++A  LIGAG+SS+   MTQ +Q+EVI KF+ G +N
Sbjct  725   TKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKIN  784

Query  434   LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFVATEGSRELKRE  493
             LL+AT+VAEEGLDI  CN+V+RYGL+TNEI+MVQARGRARAD+S Y  VA  GS  ++ E
Sbjct  785   LLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADESTYVLVAHSGSGVIEHE  844

Query  494   LINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQ  553
              +N+  E +M +A+  VQ M   EY  KI +LQ  ++ ++  +  +   +  +     + 
Sbjct  845   TVNDFREKMMYKAIHCVQNMKPEEYAHKILELQMQSIMEKKMKTKRNIAKHYKNNPSLIT  904

Query  554   LLCINCMVAVGHGSDLRKVEGTHHVNVNPNFSNYYNVSRDPVVINKVFKDWKPGGVISCR  613
              LC NC V    G D+  +E  HHVN+ P F   Y + R+   + K   D++  G I C+
Sbjct  905   FLCKNCSVLACSGEDIHVIEKMHHVNMTPEFKELY-IVRENKALQKKCADYQINGEIICK  963

Query  614   NCGEVWGLQMIYKSVKLPVLKVRSMLL--ETPQGRIQAKKWSRVPFSVPDFDFLQHC  668
              CG+ WG  M++K + LP LK+R+ ++  +    + Q KKW  +P + P+ D+ + C
Sbjct  964   -CGQAWGTMMVHKGLDLPCLKIRNFVVVFKNNSTKKQYKKWVELPITFPNLDYSECC  1019


>sp|Q8R5F7|IFIH1_MOUSE Interferon-induced helicase C domain-containing 
protein 1 OS=Mus musculus OX=10090 GN=Ifih1 PE=1 SV=1
Length=1025

 Score = 655 bits (1689),  Expect = 0.0, Method: Composition-based stats.
 Identities = 287/722 (40%), Positives = 423/722 (59%), Gaps = 51/722 (7%)

Query  1     MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETV----DGAKVVVLVNR  56
             ++LR YQ EV  PAL+GKNIII LPTG+GKTR A Y+ K HL+      +  KV+VLVN+
Sbjct  307   LQLRPYQMEVAQPALDGKNIIICLPTGSGKTRVAVYITKDHLDKKKQASESGKVIVLVNK  366

Query  57    VHLVTQ-HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE  115
             V L  Q   +EF   L   + +  LSGD   +  F  + + +D++I TA++L+ +L + E
Sbjct  367   VMLAEQLFRKEFNPYLKKWYRIIGLSGDTQLKISFPEVVKSYDVIISTAQILENSLLNLE  426

Query  116   --EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQ---------PLPQVL  164
               +++ V+L+ FSLI++DECHHT+K+ VYN IM +YL+ KL+            PLPQ+L
Sbjct  427   SGDDDGVQLSDFSLIIIDECHHTNKEAVYNNIMRRYLKQKLRNNDLKKQNKPAIPLPQIL  486

Query  165   GLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRR  224
             GLTASPG G A K   A  H+L +CANLD + I + +    QL+   ++PCK++ +    
Sbjct  487   GLTASPGVGAAKKQSEAEKHILNICANLDAFTIKTVKENLGQLKHQIKEPCKKFVIADDT  546

Query  225   SQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHL  284
              ++PF + L ++M  I  + +   +S  FGTQ YEQ  +++ + AA  G ++ RV A HL
Sbjct  547   RENPFKEKLLEIMASIQTYCQKSPMS-DFGTQHYEQWAIQMEKKAAKDGNRKDRVCAEHL  605

Query  285   RRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQIL-----------------------  321
             R+YN+AL I+DT+R +DA + L+ FY  E   K  +L                       
Sbjct  606   RKYNEALQINDTIRMIDAYSHLETFYTDEKEKKFAVLNDSDKSDDEASSCNDQLKGDVKK  665

Query  322   -----CAERRLLALFDDRKNELAHLATHG-PENPKLEMLEKILQRQF-SSSNSPRGIIFT  374
                    +  L+ LF D K  L  LA +   EN KL  L   +  QF  S  S RGIIFT
Sbjct  666   SLKLDETDEFLMNLFFDNKKMLKKLAENPKYENEKLIKLRNTILEQFTRSEESSRGIIFT  725

Query  375   RTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNL  434
             +TRQS ++L  W+ +      V ++A  LIGAG+SS+   MTQ +Q+EVI KF+ G +NL
Sbjct  726   KTRQSTYALSQWIMENAKFAEVGVKAHHLIGAGHSSEVKPMTQTEQKEVISKFRTGEINL  785

Query  435   LVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFVATEGSRELKREL  494
             L+AT+VAEEGLDI  CN+V+RYGL+TNEI+MVQARGRARAD+S Y  V + GS   +RE+
Sbjct  786   LIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADESTYVLVTSSGSGVTEREI  845

Query  495   INEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQL  554
             +N+  E +M +A+  VQ M   EY  KI +LQ  ++ ++  +  +   ++       + L
Sbjct  846   VNDFREKMMYKAINRVQNMKPEEYAHKILELQVQSILEKKMKVKRSIAKQYNDNPSLITL  905

Query  555   LCINCMVAVGHGSDLRKVEGTHHVNVNPNFSNYYNVSRDPVVINKVFKDWKPGGVISCRN  614
             LC NC + V  G ++  +E  HHVN+ P F   Y + R+   + K F D++  G I C+ 
Sbjct  906   LCKNCSMLVCSGENIHVIEKMHHVNMTPEFKGLY-IVRENKALQKKFADYQTNGEIICK-  963

Query  615   CGEVWGLQMIYKSVKLPVLKVRSMLLETPQG--RIQAKKWSRVPFSVPDFDFLQHCAENL  672
             CG+ WG  M++K + LP LK+R+ ++       + Q KKW  +P   PD D+ ++C  + 
Sbjct  964   CGQAWGTMMVHKGLDLPCLKIRNFVVNFKNNSPKKQYKKWVELPIRFPDLDYSEYCLYSD  1023

Query  673   SD  674
              D
Sbjct  1024  ED  1025


>sp|O95786|RIGI_HUMAN Antiviral innate immune response receptor 
RIG-I OS=Homo sapiens OX=9606 GN=RIGI PE=1 SV=2
Length=925

 Score = 612 bits (1579),  Expect = 0.0, Method: Composition-based stats.
 Identities = 217/699 (31%), Positives = 357/699 (51%), Gaps = 50/699 (7%)

Query  1    MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVD---GAKVVVLVNRV  57
             + R+YQ E+ +PA++GKN II  PTG GKT  +  + + HL+        KVV   N++
Sbjct  241  FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQI  300

Query  58   HLVTQHGEEFRRMLDGR-WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE  116
             +  Q    F +  +   + VT +SG          +   +D++I T ++L   L   ++
Sbjct  301  PVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL---KK  357

Query  117  EEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQ-RAQPLPQVLGLTASPGTGGA  175
                 L++F+L++ DECH+T K   YN+IM  YL+ KL   + PLPQV+GLTAS G G A
Sbjct  358  GTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDA  417

Query  176  SKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKK  235
               D A++++ +LCA+LD   I + ++   +L++   +P K +     R  D F  ++ +
Sbjct  418  KNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQ  477

Query  236  LMDQI----HDHLEMPEL-----SRKFGTQMYEQQVVKLSEAAALAGL----QEQRV---  279
            LM           +  E      +R+FGTQ YEQ +V + +A  +  +    +E R+   
Sbjct  478  LMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKA  537

Query  280  ---YALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKN  336
               Y  HLR+YNDAL+I +  R  DAL  L+DF+   +V        E+ L   F+++  
Sbjct  538  LFLYTSHLRKYNDALIISEHARMKDALDYLKDFF--SNVRAAGFDEIEQDLTQRFEEKLQ  595

Query  337  ELAHLAT-HGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQT  395
            EL  ++     ENPKLE L  ILQ ++  +     I+F +TR    +L  W++    L  
Sbjct  596  ELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSF  655

Query  396  VDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ-DGTLNLLVATSVAEEGLDIPHCNVVV  454
              ++  +L G G ++Q+T MT   Q+ ++  F+  G  N+L+ATSVA+EG+DI  CN+V+
Sbjct  656  --LKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVI  713

Query  455  RYGLLTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMD  514
             Y  + N I M+Q RGR RA  S   F+ T  +  +++E IN   E +M  ++  +Q  D
Sbjct  714  LYEYVGNVIKMIQTRGRGRARGSK-CFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWD  772

Query  515  QAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPV---EHVQLLCINCMVAVGHGSDLRK  571
            +A ++ KI  +Q         +   R++Q +  PV   E+ +LLC  C     + +D+R 
Sbjct  773  EAVFREKILHIQT-------HEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRV  825

Query  572  VEGTHHVNVNPNFSNYYNVSRDPVVINKVFKDWKPGGVISC--RNCGEVWGLQMIYKSVK  629
            +E  H+  +   F   +     P    K F  ++    I C  +NC   WG+ + YK+ +
Sbjct  826  IEECHYTVLGDAFKECFVSRPHPK--PKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFE  883

Query  630  LPVLKVRSMLLETPQGRIQ--AKKWSRVPFSVPDFDFLQ  666
            +PV+K+ S ++E     +Q    KW    F    FD  +
Sbjct  884  IPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE  922


>sp|Q6Q899|RIGI_MOUSE Antiviral innate immune response receptor 
RIG-I OS=Mus musculus OX=10090 GN=Rigi PE=1 SV=2
Length=926

 Score = 595 bits (1534),  Expect = 0.0, Method: Composition-based stats.
 Identities = 211/699 (30%), Positives = 361/699 (52%), Gaps = 50/699 (7%)

Query  1    MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVD---GAKVVVLVNRV  57
            ++ R+YQ E+ +PA +GKN II  PTG GKT  +  + + HL+        KVV   N++
Sbjct  242  LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQI  301

Query  58   HLVTQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE  116
             +  Q    F R  +   + + ++SG         H+   +D++I T ++L   L +   
Sbjct  302  PVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNG--  359

Query  117  EEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQ-PLPQVLGLTASPGTGGA  175
                 L+VF+L++ DECH+T K+  YN IM +YL+ KL  ++ PLPQV+GLTAS G G A
Sbjct  360  -AIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRDPLPQVVGLTASVGVGDA  418

Query  176  SKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKK  235
               + A+ H+ +LCA LD   I + ++   +L++   +P K       R+ + F  ++ +
Sbjct  419  KTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQ  478

Query  236  LMDQIHDHLEMPEL---------SRKFGTQMYEQQVVKLSEAAALAGL----QEQRV---  279
            LM +     +             +R+FGTQ YEQ +V + +A ++  +    +E RV   
Sbjct  479  LMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKA  538

Query  280  ---YALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKN  336
               Y  HLR+YNDAL+I +  +  DAL  L+ F+H   V +      ER L   F+++  
Sbjct  539  LFLYTSHLRKYNDALIISEDAQMTDALNYLKAFFHD--VREAAFDETERELTRRFEEKLE  596

Query  337  ELAHLAT-HGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQT  395
            EL  ++     ENPKL  L  +LQ ++      + I+F +TR    +L  W+++   L  
Sbjct  597  ELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSF  656

Query  396  VDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ-DGTLNLLVATSVAEEGLDIPHCNVVV  454
              ++  +L G G ++++T MT   Q+ V++ F+  G  N+L+ATSVA+EG+DI  CN+V+
Sbjct  657  --LKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVI  714

Query  455  RYGLLTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMD  514
             Y  + N I M+Q RGR RA  S   F+ T  +  +++E  N   E +M +++  +Q  D
Sbjct  715  LYEYVGNVIKMIQTRGRGRARDSK-CFLLTSSADVIEKEKANMIKEKIMNESILRLQTWD  773

Query  515  QAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPV---EHVQLLCINCMVAVGHGSDLRK  571
            + ++   +  +Q         +   R++Q +  PV   E+ +LLC  C     + +D+R 
Sbjct  774  EMKFGKTVHRIQ-------VNEKLLRDSQHKPQPVPDKENKKLLCGKCKNFACYTADIRV  826

Query  572  VEGTHHVNVNPNFSNYYNVSRDPVVINKVFKDWKPGGVISC--RNCGEVWGLQMIYKSVK  629
            VE +H+  +   F   +     P    K++ +++    I C  +NC   WG+ + YK+ +
Sbjct  827  VETSHYTVLGDAFKERFVCKPHPK--PKIYDNFEKKAKIFCAKQNCSHDWGIFVRYKTFE  884

Query  630  LPVLKVRSMLLETPQGRIQAK--KWSRVPFSVPDFDFLQ  666
            +PV+K+ S ++E     +Q +  KW    F    FD  +
Sbjct  885  IPVIKIESFVVEDIVSGVQNRHSKWKDFHFERIQFDPAE  923


>sp|Q9GLV6|RIGI_PIG Antiviral innate immune response receptor 
RIG-I OS=Sus scrofa OX=9823 GN=RIGI PE=2 SV=1
Length=940

 Score = 583 bits (1503),  Expect = 0.0, Method: Composition-based stats.
 Identities = 215/704 (31%), Positives = 342/704 (49%), Gaps = 55/704 (8%)

Query  1    MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVD---GAKVVVLVNRV  57
            ++ R YQ E+ +PA  GKN II  PTG GKT  +  + + HL+        KVV    ++
Sbjct  239  LKPRKYQLELALPAQNGKNTIICAPTGCGKTFVSLLICEHHLKKFPRGRKGKVVFFAIQL  298

Query  58   HLVTQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE  116
             +  Q    F +  +   + V  +SG          +    D++I T ++L   LT+   
Sbjct  299  PVYEQQKSVFSKHFERLGYKVAGISGATSDTVCVEQIVENSDIIILTPQILVNCLTNGT-  357

Query  117  EEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQ-RAQPLPQVLGLTASPGTGGA  175
                 L+VF+L++ DECH+T K   YNVIM  YL+ KL   +  LPQV+GLTAS G G A
Sbjct  358  --IPSLSVFTLMIFDECHNTSKQHPYNVIMFSYLDRKLGGSSDSLPQVIGLTASVGVGDA  415

Query  176  SKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKK  235
                 A  ++ +LCA+LDT  I + ++   +L+E   +P K +     R+ D F  ++ +
Sbjct  416  KNKAEATEYICKLCASLDTSVIATVRDNLEELEEVVYKPQKFFRKVELRTTDRFKCIISQ  475

Query  236  LMDQIHDHLEMPEL--------------SRKFGTQMYEQQVVKLSEAAALAGL----QEQ  277
            LM +I    +                  +  FGTQ YEQ +VK+ +  A+  +    +E 
Sbjct  476  LMMEIESLAKSIFEELGTITLGGLFQIQNSNFGTQKYEQWIVKVQKECAVFQMPDKDKES  535

Query  278  RV------YALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALF  331
            R+      Y  HLR YNDAL+I++  R  DAL  L+DF+   ++        E+ L   F
Sbjct  536  RICKALFSYMSHLRIYNDALIINEHARMKDALDYLKDFFR--NIRAAGFDEIEQDLTQRF  593

Query  332  DDRKNELAHLAT-HGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQ  390
            +++  EL  ++     ENPKL  L  ILQ ++  +   R I+F +TR    +L  W+++ 
Sbjct  594  EEKLQELESISIDPSNENPKLRDLCFILQEEYHLNPETRTILFVKTRALVDALKKWIKEN  653

Query  391  QGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN-LLVATSVAEEGLDIPH  449
              L    ++  +L G G ++Q+  MT   Q+ V+  F+    N +L+ TSVA+EG+DI  
Sbjct  654  PKLSF--LKPSILTGRGKTNQNIGMTLPAQKCVLDTFRTDKDNKILITTSVADEGIDIAQ  711

Query  450  CNVVVRYGLLTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAA  509
            CN+V+ Y  + N I M+Q RGR RA  S   F+ T  +  + +E +N   E +M  A+  
Sbjct  712  CNLVILYEYVGNVIKMIQTRGRGRARGSK-CFLLTANADLIDKEKMNMYKEEMMNGAILI  770

Query  510  VQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEH---VQLLCINCMVAVGHG  566
            +Q  D+A ++ KI  +Q         +   R+NQ +  PV      +LLC  C     + 
Sbjct  771  LQTWDEAVFKEKIHQIQ-------IREKIIRDNQGKPEPVPDKKTKKLLCKKCKAFACYT  823

Query  567  SDLRKVEGTHHVNVNPNFSNYYNVSRDPVVINKVFKDWKPGGVISCR--NCGEVWGLQMI  624
            +D+R VE  H   V   F   +     P    K F + +    I C   +C   WG+ + 
Sbjct  824  ADIRMVEKCHFTVVGDAFRERFVSKLHPK--PKSFGNIEKRAKIYCARPDCSHDWGIYVR  881

Query  625  YKSVKLPVLKVRSMLLETPQGRIQA--KKWSRVPFSVPDFDFLQ  666
            YK+ ++P +K+ S ++E     +Q    KW    F    FD  +
Sbjct  882  YKAFEMPFIKIESFVVEDIATGVQTVHAKWKDFNFEKLSFDAAE  925


>sp|Q4WA22|DCL2_ASPFU Dicer-like protein 2 OS=Aspergillus fumigatus 
(strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293) 
OX=330879 GN=dcl2 PE=3 SV=2
Length=1388

 Score = 419 bits (1078),  Expect = 4e-130, Method: Composition-based stats.
 Identities = 140/572 (24%), Positives = 236/572 (41%), Gaps = 56/572 (10%)

Query  2    ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVV-VLVNRVHLV  60
            + R+YQ E++  +++ +NII+ + TG+GKT  A    K  L+     KVV  L   V L 
Sbjct  15   QPRNYQLEMLEASMK-ENIIVAMDTGSGKTHIAVLRIKAELDICSPDKVVWFLAPTVALC  73

Query  61   TQHGEEFRRMLDGRWTVTTLSGD----MGPRAGFGHLARCHDLLICTAELLQMALTSPEE  116
             Q  E     L    T T    D       ++ +  +   + +++ T  +L  AL+    
Sbjct  74   IQQHEVIASNLPAVRTRTLTGLDKVELWTDQSIWDAVLNGYRVIVSTHAVLADALS----  129

Query  117  EEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQP--LPQVLGLTASPGTGG  174
               V+++  +L++ DE HH  +    N IM  +    L ++ P  +P+++GLTASP    
Sbjct  130  HGFVKMSQLALLIFDEAHHCTRRHAANKIMQDFYHPTLTKSGPAAVPRIMGLTASPVVRS  189

Query  175  ASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLK  234
              +       +L + +NLD  C  +P+    +L + + +P  Q         DP G    
Sbjct  190  NHQ------ELLMVESNLDAVC-RTPRLHRQELLKFTHRPHLQQIWY--TPTDPAGFRSA  240

Query  235  KLMDQIHDHLEMPELSRKFGTQMYEQQVVK--LSEAAALAGLQEQRVYAL-HLRRYND--  289
             L       L     +   G   Y Q++ K  L + A    L   + Y    LRR+ D  
Sbjct  241  SL---TLGALYHAWENLDIGDDPYIQRLRKSPLDDRALKKALLTGKTYCREQLRRFVDRS  297

Query  290  -ALLIHDTVRAVD-----ALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLAT  343
              +       A +     ++  L+D     +++       +  L+           H A 
Sbjct  298  RHIFEELGEWAAEYYIYASIKQLRDRVRDSYMSGDWDEAEKAYLVDFLSKIPTSDIHFAL  357

Query  344  HGPE----NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIR  399
            + P+    +PK E L   L    S      G+IF + R +  ++   L           R
Sbjct  358  NDPDGFRISPKFESLLNFLDS--SDQREFSGLIFVKQRVTVSAMTSLLS-VHPYTRERFR  414

Query  400  AQLLIGAGNSSQSTH-----MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV  454
                +G  NSS S       +  + Q++ +  F+ G  NL++AT V EEG+D+  C+VVV
Sbjct  415  CAAYVGWSNSSASKDILGDLLNMQLQRDTLDDFRSGRKNLIIATDVLEEGIDLSACSVVV  474

Query  455  RYGLLTNEISMVQARGRARADQSVYAFVA----TEGSRELKRELINEALETLME-----Q  505
             Y    N  S +Q RGRAR  QS +A +     T       ++L    +E   +     Q
Sbjct  475  CYDKPPNLKSFIQRRGRARRKQSTFAIMFPTDDTSADVSRWQDLEQAMIEAYQDDERQLQ  534

Query  506  AVAAVQKMDQAEYQAKIRDLQQAALTKRAAQA  537
            +V+A++ +D+   +    D   A LT   A A
Sbjct  535  SVSALESLDEEVMERLTGDSTSAVLTADMAMA  566


>sp|A1D9Z6|DCL2_NEOFI Dicer-like protein 2 OS=Neosartorya fischeri 
(strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 
/ JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dcl2 PE=3 SV=1
Length=1388

 Score = 419 bits (1077),  Expect = 6e-130, Method: Composition-based stats.
 Identities = 139/572 (24%), Positives = 233/572 (41%), Gaps = 56/572 (10%)

Query  2    ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK-VVVLVNRVHLV  60
            + R+YQ E++  +++ +NII+ + TG+GKT  A    K  L+     K V  L   V L 
Sbjct  15   QPRNYQLEMLEASMK-ENIIVAMDTGSGKTHIAVLRIKAELDICPPDKLVWFLAPTVALC  73

Query  61   TQHGEEFRRMLDGRWTVTTLSGD----MGPRAGFGHLARCHDLLICTAELLQMALTSPEE  116
             Q  E     L    T T    D       ++ +  +   + +++ T  +L  AL+    
Sbjct  74   IQQHEVIASNLPAVRTRTLTGLDKVELWTEQSIWDAVLNGYRVIVSTHAVLADALS----  129

Query  117  EEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQP--LPQVLGLTASPGTGG  174
               V+++  +L++ DE HH  +    N IM  +    L ++ P  +P+++GLTASP    
Sbjct  130  HGFVKMSRLALLIFDEAHHCTRRHAANKIMRDFYHPTLTKSGPGAVPRIMGLTASPVVRS  189

Query  175  ASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLK  234
              +       +L + +NLD  C  +P+    +L + + +P  Q         DP G    
Sbjct  190  NHQ------ELLTVESNLDAVC-RTPRVHRQELVKFTHRPHLQQIWY--TPTDPAG---F  237

Query  235  KLMDQIHDHLEMPELSRKFGTQMYEQQVVK--LSEAAALAGLQEQRVYAL-HLRRYND--  289
            K   Q    L     +   G   Y Q++ K  L + A    L   + Y    LRR+ D  
Sbjct  238  KSASQTLGALYHAWETLDIGDDPYIQRLRKSPLDDTALKKALLTGKTYCREQLRRFVDRS  297

Query  290  -ALLIHDTVRAVD-----ALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLAT  343
              +       A +     ++  L D     +++       +  L+            LA 
Sbjct  298  RHIFEELGEWAAEYYIYASIKQLGDRVRNSYMSGDWDEAEKAYLVDFLSKIPASEIQLAL  357

Query  344  HGP----ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIR  399
            + P     +PK E L   L        S  G+IF + R +  ++   L      +    R
Sbjct  358  NDPGSFRISPKFESLLNFLDSLDEREFS--GLIFVKQRATVSAMTSLLSVHPCTRE-RFR  414

Query  400  AQLLIGAGNSSQSTH-----MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV  454
                +G  N S S       +  + Q++ +  F+ G  NL++AT V EEG+DI  C+VVV
Sbjct  415  CAAYVGWSNGSASKDILGDLLNMQLQRDTLDDFRSGRKNLIIATDVLEEGIDISACSVVV  474

Query  455  RYGLLTNEISMVQARGRARADQSVYAFVATEGSRELK----RELINEALETLME-----Q  505
             Y    N  S VQ RGRAR  QS +A +             ++L    +E   +     Q
Sbjct  475  CYDKPPNLKSFVQRRGRARRKQSTFAIMFPTDDASADVSKWQDLEQAMIEAYQDDERQLQ  534

Query  506  AVAAVQKMDQAEYQAKIRDLQQAALTKRAAQA  537
            +V+A++ +D+   +    +   A LT   A A
Sbjct  535  SVSALESLDEEVMERLTVESTSAVLTADMAMA  566


>sp|A1DE13|DCL1_NEOFI Dicer-like protein 1 OS=Neosartorya fischeri 
(strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 
/ JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dcl1 PE=3 SV=1
Length=1538

 Score = 405 bits (1040),  Expect = 7e-124, Method: Composition-based stats.
 Identities = 136/524 (26%), Positives = 221/524 (42%), Gaps = 50/524 (10%)

Query  1    MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYV----AKRHLETVDGAK----VVV  52
            ++ R YQ E+   A + +N I  L TG+GKT  A  +        L+     K       
Sbjct  125  LDPREYQIELFERA-KTQNTIAVLDTGSGKTLIAVLLLRHTILNELDNRANGKPHRVSFF  183

Query  53   LVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMG----PRAGFGHLARCHDLLICTAELLQ  108
            LV+ V L  Q     R  +D    V    G MG     +  +    + + +++CTAE+L 
Sbjct  184  LVDSVTLAYQQAAVLRNNIDQ--NVAHFFGAMGTDLWDKRTWDEHLQRNMVIVCTAEILN  241

Query  109  MALTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTA  168
              L +     +V++   +L++ DE HH  KD  Y  I+         +    P+V G+TA
Sbjct  242  QCLLN----SYVKMDQINLLIFDEAHHAKKDHPYARIIRDSY--FKAQPSQRPRVFGMTA  295

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
            SP        + A     +L   LD+    + +     L+E   +P ++    + R + P
Sbjct  296  SPIDTKGDITEAAT----RLETLLDSRIATTSKITL--LREVVSRPIEKV-WAYNRLESP  348

Query  229  FGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN  288
            F   L KLMD  + ++++ E   +F      +     S+ A    L +  +  L     N
Sbjct  349  FATELYKLMDTRYGNIKVLEGVYRFAWHASSELGKWCSDRAWWHALADDVLPKLE---GN  405

Query  289  DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPEN  348
             + L+       +  A  +D       ++T               +    A     G  +
Sbjct  406  ISKLVESNTLNAEHGAVFKDIIRIREASET--------------VKNYSFADPELPGELS  451

Query  349  PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN  408
            PK+++L   L + FS +   + I+FT+ R +A  L         L    +R  +LIG   
Sbjct  452  PKVQLLRMELSKHFSDTTGTKCIVFTQKRYTAKILNELFTV---LNIPHLRPGVLIGVRP  508

Query  409  SS-QSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
                  ++T R Q   + KF+ G +N L ATSVAEEGLDIP CN+VVR+ L    I  VQ
Sbjct  509  GDIGGMNVTFRQQFLALVKFRTGEINCLFATSVAEEGLDIPDCNLVVRFDLYRTLIQYVQ  568

Query  468  ARGRARADQSVYAFVATEGSRELKRELIN-EALETLMEQAVAAV  510
            +RGRAR   S YA +  + + E +  L      E +M++    +
Sbjct  569  SRGRARHCTSTYAIMVEKDNAEHEGRLKEIREAEKIMQRFCETL  612


>sp|Q4WVE3|DCL1_ASPFU Dicer-like protein 1 OS=Aspergillus fumigatus 
(strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293) 
OX=330879 GN=dcl1 PE=3 SV=3
Length=1537

 Score = 401 bits (1031),  Expect = 1e-122, Method: Composition-based stats.
 Identities = 134/524 (26%), Positives = 217/524 (41%), Gaps = 50/524 (10%)

Query  1    MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYV----AKRHLETVDGAKV----VV  52
            ++ R YQ E+   A + +N I  L TG+GKT  A  +        L+     K       
Sbjct  124  LDPREYQIELFERA-KTQNTIAVLDTGSGKTLIAVLLLRHTILNELDDRANGKTHRVSFF  182

Query  53   LVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMG----PRAGFGHLARCHDLLICTAELLQ  108
            LV+ V L  Q     R  +D    V    G MG     +  +    + + +++CTAE+L 
Sbjct  183  LVDSVTLAYQQAAVLRNNIDQ--NVAHFFGAMGTDLWDKRTWDKHLQRNMVIVCTAEILN  240

Query  109  MALTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTA  168
              L +     +V +   +L++ DE HH  KD  Y  I+         +    P+V G+TA
Sbjct  241  QCLLN----SYVRMDQINLLIFDEAHHAKKDHPYARIIRDSY--FKAQPSQRPRVFGMTA  294

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
            SP        + A     +L   LD+    + +     L+E   +P ++    + R + P
Sbjct  295  SPIDTKGDITEAAT----RLETFLDSRIATTSKITL--LREVVSRPIEKV-WAYNRLEPP  347

Query  229  FGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN  288
            F   L KLMD  + ++++ E   +F      +     S+ A    L +  +  L     N
Sbjct  348  FATELYKLMDTRYGNIKVLEGVYRFAWNASSELGKWCSDRAWWHALADDVLPKLE---GN  404

Query  289  DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPEN  348
               LI       +  A  +D       ++T               +          G  +
Sbjct  405  INKLIESNTMKAEHGAVFKDIIRIREASET--------------VKNYFFTDPELPGELS  450

Query  349  PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN  408
            PK++ L   L + F+ +   + I+FT+ R +A  L         L   ++R  +LIG   
Sbjct  451  PKVQRLRMELSKHFNDTTGTKCIVFTQKRYTAKILNELFTV---LNIPNLRPGVLIGVRP  507

Query  409  SS-QSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
                  ++T R Q   + KF+ G +N L ATSVAEEGLDIP CN+V+R+ L    I  VQ
Sbjct  508  GDIGGMNITFRQQFLALVKFRTGEINCLFATSVAEEGLDIPDCNLVIRFDLYRTLIQYVQ  567

Query  468  ARGRARADQSVYAFVATEGSRELKRELIN-EALETLMEQAVAAV  510
            +RGRAR   S YA +  + + E +  L      E +M +    +
Sbjct  568  SRGRARHCTSTYAIMVEKDNAEHEGRLKEIREAENIMRRFCEIL  611


>sp|A1CBC9|DCL1_ASPCL Dicer-like protein 1 OS=Aspergillus clavatus 
(strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / 
NRRL 1 / QM 1276 / 107) OX=344612 GN=dcl1 PE=3 SV=2
Length=1534

 Score = 399 bits (1024),  Expect = 1e-121, Method: Composition-based stats.
 Identities = 133/524 (25%), Positives = 212/524 (40%), Gaps = 50/524 (10%)

Query  1    MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLET--------VDGAKVVV  52
            ++ R YQ E+   A + +N I  L TG+GKT  A  + +  L+                 
Sbjct  121  LDPREYQIELFERA-KAQNTIAVLDTGSGKTLIAVLLLRHVLQNELNDRANGKPHRVSFF  179

Query  53   LVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMG----PRAGFGHLARCHDLLICTAELLQ  108
            LV+ V L  Q     R  +D    V    G MG     R  +    + + +++CTAE+L 
Sbjct  180  LVDSVTLAYQQAAVLRNNIDQ--NVAHFFGAMGTDLWDRQVWEEHLQQNMVIVCTAEILN  237

Query  109  MALTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTA  168
              L +     HV +   +L++ DE HHT KD  Y  I+              P++ G+TA
Sbjct  238  QCLLN----SHVRMNQINLLIFDEAHHTKKDHPYARIIRDSY--FKASPPQRPRIFGMTA  291

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
            SP       +  A     +L   LD+    + +     L++   +P ++    + R + P
Sbjct  292  SPIDTKGDIIAAAT----RLETLLDSRIATTSKITL--LRQVVSRPIEKV-WAYDRLESP  344

Query  229  FGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN  288
            F   L KLM+    +++  E   +F      +     S+ A L  L +  +  L      
Sbjct  345  FKTNLHKLMENRFGNVKALEGVFRFAWYASSELGRWCSDRAWLYALADDVLPKLEGHVNK  404

Query  289  DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPEN  348
             A           A   +       ++ K                           G  +
Sbjct  405  LAESTAAATERDMAFKEITLIKEASNIVKAHT-----------------FNDPEFPGELS  447

Query  349  PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN  408
            PK+ +L+  L + FS +   + IIFT+ R +A +L         L    +R  +LIG  +
Sbjct  448  PKVRLLQTELSKHFSHAPETKCIIFTQKRYTAKTLHELFT---ILSIPHLRPGVLIGVRS  504

Query  409  SS-QSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
                  ++T R Q   + KF+ G +N L ATSVAEEGLDIP CN+VVR+ L    I  VQ
Sbjct  505  GDIGGMNITFRQQFLALVKFRKGEINCLFATSVAEEGLDIPDCNLVVRFDLYHTLIQYVQ  564

Query  468  ARGRARADQSVYAFVATEGSRELKRELIN-EALETLMEQAVAAV  510
            +RGRAR   S YA +  + + + +  L      E  M+     +
Sbjct  565  SRGRARHYHSTYASMVEKDNSDHEARLREVREAEKTMQNFCETL  608


>sp|A2RAF3|DCL1_ASPNC Dicer-like protein 1 OS=Aspergillus niger 
(strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) OX=425011 
GN=dcl1 PE=3 SV=2
Length=1525

 Score = 397 bits (1020),  Expect = 5e-121, Method: Composition-based stats.
 Identities = 135/530 (25%), Positives = 224/530 (42%), Gaps = 63/530 (12%)

Query  1    MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLET--------VDGAKVVV  52
            ++ R YQ E+   A + +N I  L TG+GKT  A  + K  LE                 
Sbjct  115  LDPREYQLELFERA-KVQNTIAVLDTGSGKTLIAVLLLKHTLEKELNDRMEGKPHRIAFF  173

Query  53   LVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAG----FGHLARCHDLLICTAELLQ  108
            LV+ V L  Q     R  LD   +V    G MG        +    + + +++CTAE+L 
Sbjct  174  LVDSVTLAYQQAAVLRNNLDQ--SVGHFFGAMGTDLWSKSVWDQHFQKNMVIVCTAEILN  231

Query  109  MALTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTA  168
              L +     +++++  ++++ DE HHT KD  Y  I+      ++      P++ G+TA
Sbjct  232  QCLLN----SYIKMSQINILIFDEAHHTKKDHPYARIIRDSYLEEV--YSKRPRIFGMTA  285

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
            SP       +D A     +L   LD+    +       L++ +++P ++      + + P
Sbjct  286  SPIDTKGDIVDEAT----RLEKLLDSRIATTS--NMSLLRQVARRPVERV-WSFNKLEQP  338

Query  229  FGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN  288
            F   L K ++     +   E   +F  Q   +     S+ A    L              
Sbjct  339  FATSLYKHLEDRFGDMACLEGIFRFAWQASSELGRWCSDRAWARAL--------------  384

Query  289  DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAE---RRLLALFDD----RKNELAHL  341
                      A D L  L+    +   ++T     E   + +L + +     +    +  
Sbjct  385  ----------ADDVLPKLEGSVRKTANSETSSNVPESAYKEILRITEASEIVKSYAFSSP  434

Query  342  ATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQ  401
             T G  +PK+++L + L R F      + I+FT+ R +A  L    Q    L    +R  
Sbjct  435  ETFGQLSPKVQVLREELARYFGRQTETKCIVFTQKRYTALILAELFQT---LNIPFLRPG  491

Query  402  LLIGAGNSSQ-STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT  460
            +LIG  +      ++T R Q   + KF+ G +N L ATSVAEEGLDIP CN+VVR+ L  
Sbjct  492  VLIGVRSGDLAGMNITFRQQFISLVKFRTGEINCLFATSVAEEGLDIPDCNLVVRFDLYQ  551

Query  461  NEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAV  510
              I  VQ+RGRAR   S YA +   G+ E ++ L+      +M+     +
Sbjct  552  TLIQYVQSRGRARHFNSTYASMVERGNLEHEQRLLEVQDAEMMQSFCRTL  601


>sp|Q2U6C4|DCL1_ASPOR Dicer-like protein 1 OS=Aspergillus oryzae 
(strain ATCC 42149 / RIB 40) OX=510516 GN=dcl1 PE=3 SV=2
Length=1523

 Score = 395 bits (1014),  Expect = 3e-120, Method: Composition-based stats.
 Identities = 129/530 (24%), Positives = 220/530 (42%), Gaps = 63/530 (12%)

Query  1    MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLET--------VDGAKVVV  52
            ++ R YQ E+   A + +N I  L TG+GKT  A  + K  ++                 
Sbjct  114  LDPREYQVELFERA-KSQNTIAVLDTGSGKTLIAVLLLKHIIQNELIDRANGKPPRISFF  172

Query  53   LVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAG----FGHLARCHDLLICTAELLQ  108
            LV+ V L  Q     R  LD    V    G MG        + H    + +++CTAE+L 
Sbjct  173  LVDSVTLAFQQAAVLRNNLDQ--NVAQFFGAMGTDLWSKQTWDHQFENNMVIVCTAEILN  230

Query  109  MALTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTA  168
              L +     ++ +   +L++ DE HHT KD  Y  I+ +            P++ G+TA
Sbjct  231  QCLLN----SYIRMDQINLLIFDEAHHTKKDHPYARIIRESY--LKADPTKRPRIFGMTA  284

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
            SP       ++ A     +L   LD+    + +     L+E  ++P ++ +  + +   P
Sbjct  285  SPIDTKGDIIESAT----KLEVLLDSKIATTSKPNL--LREVVRRPIEE-SWEYDKLDPP  337

Query  229  FGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN  288
            F   L +++      +   +   +F           L  ++ L      R +A  L    
Sbjct  338  FATKLYQILQARFGDISSLQPVFRFT----------LQASSELGPCCADRAWAYAL----  383

Query  289  DALLIHDTVRAVDALAALQDFYHR--EHVTKTQILCAERRLLALFDD----RKNELAHLA  342
                      A D L  L+    +  + ++     CA + +  + +     + +      
Sbjct  384  ----------ADDVLPKLEGNVRKLAQSISSPIPQCALKEISRIQEASDIVKNHSFNSPN  433

Query  343  THGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL  402
              G  +PK+++L + L + F      + I+FT+ R +A  L         L+   +R  +
Sbjct  434  VPGELSPKVQLLRQKLIKYFEHPTKTKCIVFTQKRYTAKMLFDLFST---LEIPYLRPGV  490

Query  403  LIGAGNSSQ-STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN  461
            LIG  +      +++ R Q   + KF+ G +N L ATSVAEEGLDIP CN+VVR+ L   
Sbjct  491  LIGVRSGDIVGMNVSFRQQFLALVKFRSGEINCLFATSVAEEGLDIPDCNLVVRFDLYNT  550

Query  462  EISMVQARGRARADQSVYAFVATEGSRELKRELIN-EALETLMEQAVAAV  510
             I  VQ+RGRAR   S YA +    + +    L+     E LM+     +
Sbjct  551  LIQYVQSRGRARHSSSTYASMIERYNADHAARLVEVREAEKLMQSFCETL  600


>sp|Q1DKI1|DCL1_COCIM Dicer-like protein 1 OS=Coccidioides immitis 
(strain RS) OX=246410 GN=DCL1 PE=3 SV=3
Length=1500

 Score = 392 bits (1006),  Expect = 3e-119, Method: Composition-based stats.
 Identities = 125/526 (24%), Positives = 208/526 (40%), Gaps = 51/526 (10%)

Query  2    ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLET--------VDGAKVVVL  53
            + R YQ E+   A +  NII  L TG+GKT  A  + K  +E                 L
Sbjct  98   DPREYQVELFEKAKKD-NIIAVLDTGSGKTLIAVLLLKHIIEQELIDRSAEKPHRVSFFL  156

Query  54   VNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAG----FGHLARCHDLLICTAELLQM  109
            V+ V LV Q     +  ++ R  V    G M         +      + +++CTAE+L  
Sbjct  157  VDSVTLVFQQAAVLQNNINQR--VDKFCGAMETDLWNGETWERHLAKNMVIVCTAEVLYQ  214

Query  110  ALTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS  169
             L        V++   +L++ DE H+  KD  Y  I+  +           P++ G+TAS
Sbjct  215  CLL----HAFVKMENINLLIFDEAHNAKKDHPYARIVKDFY--LKDGNAKRPKIFGMTAS  268

Query  170  PGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPF  229
            P       +  A N    L + + T            L++   +P ++    + R   PF
Sbjct  269  PVDAKMDVVKAARNLETLLNSQIATAS------NLSLLRQSVPRPNEEV-WSYDRLDQPF  321

Query  230  GDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND  289
               L K +      L   E    F  +         ++      L E+ +  L  R    
Sbjct  322  ETRLYKELRSRFGDLRALEKLFTFSLKASSNLGAWCADWVWSYALTEESLPKLEGRAART  381

Query  290  ALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENP  349
            A+      + V   A +Q       + ++           L                 +P
Sbjct  382  AMGNLPIAKIVRPEAEIQRIREASEIIRSHKFGDPAVRPELL----------------SP  425

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG-AGN  408
            K+  L   L + F      + I+FT  R +A  L     +     T  +R  +LIG   +
Sbjct  426  KVRRLHHELLKYFERHTDTKCIVFTEQRHTARILCDLFSRIG---TKHLRPGVLIGVRSD  482

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
            +S   +++ R Q   +  F+ G +N L ATSVAEEGLDIP CN++VR+ L +     +Q+
Sbjct  483  ASGGMNISFRQQVLAVVSFRKGEVNCLFATSVAEEGLDIPDCNLIVRFDLASTLTQYIQS  542

Query  469  RGRARADQSVYAFVATEGSRELKRELIN--EALETLMEQAVAAVQK  512
            RGRAR   S +A +    +  + RE +N  ++ E +M++   ++ K
Sbjct  543  RGRARHMNSTFAHLVERDNF-VHRESVNHLQSSEEIMKRFCISLPK  587


>sp|A1C9M6|DCL2_ASPCL Dicer-like protein 2 OS=Aspergillus clavatus 
(strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / 
NRRL 1 / QM 1276 / 107) OX=344612 GN=dcl2 PE=3 SV=1
Length=1389

 Score = 389 bits (998),  Expect = 1e-118, Method: Composition-based stats.
 Identities = 130/573 (23%), Positives = 231/573 (40%), Gaps = 58/573 (10%)

Query  2    ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVV-VLVNRVHLV  60
            + R+YQ E++  +++ +NII+ + TG+GKT  A    K  L++    K++  L   V L 
Sbjct  15   QARNYQLEMLEASMK-ENIIVAMDTGSGKTHIAVLRIKAELDSCPPDKIIWFLAPTVALC  73

Query  61   TQHGEEFRRMLDGRWTVTTLSGD----MGPRAGFGHLARCHDLLICTAELLQMALTSPEE  116
            TQ  +     L    T T    D       +A +  + +   +++ T  +L  AL+    
Sbjct  74   TQQHKVIASNLPAVQTRTLTGLDKVELWTEQAIWDAILKDVRVVVSTYAVLADALS----  129

Query  117  EEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQP--LPQVLGLTASPGTGG  174
               + ++  +LI+ DE HH  +    N IM  +    + +  P  +P+++GLTASP    
Sbjct  130  HGFMRMSRLALIIFDEAHHCMRKHAANKIMQDFYHPTVSKFGPSAVPRIMGLTASPVVRS  189

Query  175  ASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFG-DLL  233
                      +  +  NLD  C  +P+    +L + S +P  +  L      DP G  + 
Sbjct  190  NR------EELFTIETNLDAVC-KTPRAHRQELLKFSHRPELKQLLYE--PPDPMGLQVS  240

Query  234  KKLMDQIHDHLEMPELSRKFGTQMYEQQVVK--LSEAAALAGLQEQRVYAL-HLRRYND-  289
             + +  + +  E  ++        Y +++ K  L   A    L   + +    L+R+ D 
Sbjct  241  SQTLRALIEAWETLDI----EDDPYVKRLRKSSLDGGALEKALMTGKTFCREQLKRFVDR  296

Query  290  --ALLIHDTVRAVD-----ALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLA  342
               +       A D     ++  L+      ++T          L++           + 
Sbjct  297  SRHIFEELGEWAADYYIYTSIQHLKTRVQTSYMTGDWDEAERAYLVSFLSKLPAADIQIT  356

Query  343  THGP----ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI  398
                     +PKLE L   L           G+IF + R +   +   L      +    
Sbjct  357  LSDAACLRISPKLEALIGFLDAM--DDPEFSGLIFVKQRATVSVMTDLLAVHPRTRE-RF  413

Query  399  RAQLLIGAGNSSQSTH-----MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV  453
            R+   +G  NSS S       ++   Q   +  F+ G  NL++AT V EEG+DI  C+VV
Sbjct  414  RSAAYVGWSNSSGSKDFLGNLLSMHGQLSTLDDFRSGHKNLIIATDVLEEGIDISACSVV  473

Query  454  VRYGLLTNEISMVQARGRARADQSVYAFVA--TEGSRELKRE--LINEALETLME-----  504
            V Y    N  S VQ RGRAR  QS YA +    + + +L +   L    +E   +     
Sbjct  474  VCYDKPPNLKSFVQRRGRARQKQSTYAIMFPAEDSAFDLAKWQTLEQAMIEAYQDDERHL  533

Query  505  QAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQA  537
            Q+   ++++++   +    +   A LT   A A
Sbjct  534  QSAIELERVNEEVVERFTVESTSAVLTADTAMA  566


>sp|Q0CW42|DCL1_ASPTN Dicer-like protein 1 OS=Aspergillus terreus 
(strain NIH 2624 / FGSC A1156) OX=341663 GN=dcl1 PE=3 SV=2
Length=1519

 Score = 386 bits (990),  Expect = 6e-117, Method: Composition-based stats.
 Identities = 138/558 (25%), Positives = 225/558 (40%), Gaps = 67/558 (12%)

Query  1    MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETV--------DGAKVVV  52
            +  R YQ E+   A + +N I  L TG+GKT  A  + K  ++T                
Sbjct  107  LNPREYQIELFERA-KVQNTIAVLDTGSGKTLIAVLLLKHVIQTELIDRANGNPPRISFF  165

Query  53   LVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAG----FGHLARCHDLLICTAELLQ  108
            LV+ V LV Q     R  LD    V    G MG        +      + +++CTAE+L 
Sbjct  166  LVDSVTLVYQQASVLRNNLDQ--NVAHFFGAMGVDLWNKQTWAEHFEKNMVIVCTAEILN  223

Query  109  MALTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTA  168
              L +     ++ +   +L+V DE HHT KD  Y  I+          ++  P++ G+TA
Sbjct  224  QCLLN----AYITMQQINLLVFDEAHHTKKDHPYARIIRDSYLRVPPSSR--PRIFGMTA  277

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
            SP       L+ A N    L A LD+    + +     L++   +P ++  + + + Q  
Sbjct  278  SPVDTKGDVLEAARN----LEALLDSKIATTSKLTI--LRQVVNRPNEEVWI-YDKLQPT  330

Query  229  FGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN  288
            F   L KLM+     +   E   +F      +          L      RV+   L    
Sbjct  331  FTSDLYKLMESRFGDISHLEPMFRFARHATSE----------LGTWCADRVWVSAL----  376

Query  289  DALLIHDTVRAVDALAALQDFY--HREHVTKTQILCAERRLLALFDDRKNELAHLATHGP  346
                      A D L  ++      R+     Q+     R +    +    +     + P
Sbjct  377  ----------ADDVLPKVEGSIGGKRQSTGLGQLPKDVHRDITRIKEASELVESHPPNDP  426

Query  347  -----ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQ  401
                  + K+ +L K + + F    + + I+FT  R +A  L         L    +R  
Sbjct  427  GAPEALSSKVRVLWKEISQCFGQETNTKCIVFTEKRYTAKVLFDLFTV---LNVPGLRPG  483

Query  402  LLIGAGNSSQ-STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT  460
            +LIG  +S +   ++T R Q   + +F+ G +N L AT+VAEEGLDIP CN+VVR+ L  
Sbjct  484  VLIGVRSSDRIGMNVTFRQQILTMVRFRTGEINCLFATAVAEEGLDIPDCNLVVRFDLYK  543

Query  461  NEISMVQARGRARADQSVYAFVATEGSRELKRELIN-EALETLMEQAVAAVQKMDQAEYQ  519
              I  VQ+RGRAR   S YA +  + + + +  L+     E +M+      Q + +    
Sbjct  544  TLIQYVQSRGRARHADSTYASMIEKDNADHESILVQVNDAEKIMQSFC---QLLPEDRIL  600

Query  520  AKIRDLQQAALTKRAAQA  537
                D   A L +   + 
Sbjct  601  HGNDDDTDAVLDREEWEE  618


>sp|Q0CEI2|DCL2_ASPTN Dicer-like protein 2 OS=Aspergillus terreus 
(strain NIH 2624 / FGSC A1156) OX=341663 GN=dcl2 PE=3 SV=2
Length=1377

 Score = 380 bits (975),  Expect = 2e-115, Method: Composition-based stats.
 Identities = 136/576 (24%), Positives = 227/576 (39%), Gaps = 55/576 (10%)

Query  1    MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK-VVVLVNRVHL  59
               R+YQ E+   +L+ +NII+ + TG+GKT  A       LET    K +  L   V L
Sbjct  14   FCPRNYQTEMFEASLQ-ENIIVAMDTGSGKTHVALLRIMNELETRRPQKLIWFLAPTVAL  72

Query  60   VTQHGEEFRRMLDGRWTVTTLSGD----MGPRAGFGHLARCHDLLICTAELLQMALTSPE  115
              Q  +   + L    + T    D       +A +  + +   +++ T  +L  A+++  
Sbjct  73   CFQQHDVITKNLPAVKSRTLTGQDKVELWTEQAIWDAILKDMQVVVSTHAVLADAMSN--  130

Query  116  EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQP--LPQVLGLTASPGTG  173
                V ++   L++ DE HH  +    N IM  +    L +  P  +P +LGLTASP   
Sbjct  131  --GFVRVSQLGLLIFDEAHHCMRRHPANRIMQDFYHPTLVKQGPDAVPGILGLTASPVVR  188

Query  174  GASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLL  233
              S+       +  + +N++  C  +P+    +L  H+ +P  Q       + D      
Sbjct  189  TNSQ------ELSMIESNMNAIC-KTPRAHRQELLTHTHRPHLQQIWYTPVNIDDPTSGT  241

Query  234  KKLMDQIHDHLEMPELSRKFGTQMYEQQVVK--LSEAAALAGLQEQRVYALH-LRRYND-  289
            + L   IH    +           Y +Q+ +      A    L  ++ Y    LRR+ + 
Sbjct  242  RTLRALIHAWETI-----DLEDDPYVKQLRRSTFDGKALQKALLTRKTYCNESLRRFVER  296

Query  290  --ALLIHDTVRAVDALAALQDFYHREHVTKTQILC----AERRLLALFDDRKNELAHLAT  343
               +       AVD          RE +  + ++      E+  LA F      +     
Sbjct  297  SCHIFQELGGWAVDYFIHASIRRLREKIDDSALMLDWDNEEKEYLASFLSNIATIQSDPP  356

Query  344  HGPE----NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIR  399
              PE    +PKLE L   L     S+ S  G+IF + R +   L   L     L     R
Sbjct  357  RRPEDFIPSPKLEALISFLSSTDDSTFS--GLIFAKQRATVTVLATLLS-VHPLTKDRFR  413

Query  400  AQLLIGAGNSSQSTHM-----TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV  454
                +G         +     + + Q++ + +F+ G  NL+VAT V EEG+DI  C+VV+
Sbjct  414  CAAFVGWSGGGNRKDLIGELLSMQMQRDTLSEFRSGQKNLIVATDVLEEGIDISACSVVI  473

Query  455  RYGLLTNEISMVQARGRARADQSVYAFVATEGSR-------ELKRELINEALETLMEQAV  507
             Y    N  S VQ RGRAR  +S +A + +           +L  E + EA +    +  
Sbjct  474  CYDKPANVKSFVQRRGRARRKESTFAILFSTDDELCDLRKWQLLEEAMIEAYQDDERKRC  533

Query  508  A--AVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRE  541
               A++ M +   +    +   A LT   A A    
Sbjct  534  EALALETMAEVVTERFEVESTGAVLTADTAVARLHH  569


>sp|A1D4V5|MPH1_NEOFI ATP-dependent DNA helicase mph1 OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / 
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=mph1 
PE=3 SV=1
Length=1111

 Score = 373 bits (958),  Expect = 9e-115, Method: Composition-based stats.
 Identities = 134/591 (23%), Positives = 230/591 (39%), Gaps = 76/591 (13%)

Query  4    RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQH  63
            R YQ+ +    L   N+++ LPTG GKT  AA +          A+++ +     LV Q 
Sbjct  300  RDYQFNIAQRGL-FHNLLVALPTGLGKTFIAATIMLNWYRWTKSAQIIFVAPTKPLVAQQ  358

Query  64   GEE-FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
                F+     R   T L+G+  P        +   +   T + L   L S       + 
Sbjct  359  ISACFQVAGIPRSQTTMLTGEAAP-GIRAEEWKSKRVFFMTPQTLVNDLKS----GIADP  413

Query  123  TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLD---  179
                L+VVDE H       Y  ++       L+R     +VL LTA+PG+   S      
Sbjct  414  KRIVLLVVDEAHRATGGYAYVEVVKF-----LKRYNKSFRVLALTATPGSTVESVQAVID  468

Query  180  --GAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLM  237
              G     ++   +LD    +  ++   Q  ++S +             + F   L+ L+
Sbjct  469  GLGIAKVEIRTEQSLDIREYVHARDTEVQTFKNSDEMV--------LCMELFTRTLQPLV  520

Query  238  DQIHD----HLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALL-  292
            DQ+ +        P     FG     QQ +         G    R   L L+   +A+  
Sbjct  521  DQLRNLNAYWGRDPMALTAFGLTKARQQWM---------GSDAGRNANLGLKGKVNAIFT  571

Query  293  -IHDTVRAVDALAA--LQDFY----HREHVTKTQILCAERRLLALFDDRKNELAHLA--T  343
             +     A+D L    +  FY    H +  T  Q     +R +   +  K  + HL   T
Sbjct  572  VLASLAHAIDLLKYHGITPFYRHLLHFQSNTDGQKGGKYQRQIVQDESFKKLMNHLQPWT  631

Query  344  HGPE---NPKLEMLEKILQRQF------------SSSNSPRGIIFTRTRQSAHSLLLWLQ  388
              PE   +PKLE L++++   F             S ++ R +IF   R SA  ++  L+
Sbjct  632  KNPEFIGHPKLEYLKQVVLNHFMDRGEGTAANGDQSQSATRIMIFVHFRDSAEEVVRVLK  691

Query  389  QQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIP  448
            + + L    IR  + +G  ++  S  M Q+ Q  ++QKF+ GT N +VATS+ EEGLDI 
Sbjct  692  RYEPL----IRPHVFVGQSSAKGSEGMDQKTQLSIVQKFKKGTYNTIVATSIGEEGLDIG  747

Query  449  HCNVVVRYGLLTNEISMVQARGRARADQSV-YAFVATEGSRELKRELINEALETLMEQAV  507
              +++V Y    + I M+Q  GR    ++     +  +G  E       +  E + +   
Sbjct  748  EVDLIVCYDSSASPIRMLQRMGRTGRKRAGNIVLLLMQGKEEESYIKAKDNYEKMQQMIA  807

Query  508  AAVQKMDQAEYQAKIR--------DLQQAALTKRAAQAAQRENQRQQFPVE  550
            +  +     +   +I         + +Q  +     QA   E +++  P +
Sbjct  808  SGTRFTFHDDTSPRILPPGVRPVAEKRQIDIPVENTQADLPEPRKRARPPK  858


>sp|P0C5H7|DCL2_EMENI Dicer-like protein 2 OS=Emericella nidulans 
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) 
OX=227321 GN=dcl2 PE=3 SV=1
Length=1429

 Score = 378 bits (971),  Expect = 1e-114, Method: Composition-based stats.
 Identities = 128/529 (24%), Positives = 213/529 (40%), Gaps = 56/529 (11%)

Query  2    ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVT  61
              RSYQ E+   +L+G NII+ + TG+GKT+ A       LE  DG  +  L   V L  
Sbjct  13   RARSYQLEMFEASLKG-NIIVVMGTGSGKTQIALLRIIHELENSDGKLIWFLAPTVPLCL  71

Query  62   QHGEEFRRMLDGRWTVTTLSGD----MGPRAGFGHLARCHDLLICTAELLQMALTSPEEE  117
            Q      + +    + T L  D       +A +  +     +++ T  +L  A+T     
Sbjct  72   QQHRVISQHIPAVKSRTLLGSDKVELWTEQAVWDAVLEGLQVIVSTPAVLHDAMT----H  127

Query  118  EHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQP--LPQVLGLTASPGTGGA  175
              V ++   L++ DE HH  +    N+IM  +    LQ   P  +P++LGLTAS G+   
Sbjct  128  GFVRISRLGLLIFDEAHHCIRKHPTNMIMRNFYHPALQEYGPGAVPRILGLTASAGSSR-  186

Query  176  SKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKK  235
                     +  +  NL++ C  +PQ    +L E++  P  +  L               
Sbjct  187  -------EGLQTIEMNLNSVCT-TPQAHRQELLEYTHMPELRRVLY------------TP  226

Query  236  LMDQIHDHLEMPELSRKFG-TQMYEQQVVKLSEAAALAGLQEQRVYA--LHLRRYNDALL  292
            LM +     E   L +       Y    +K     A+   QE  ++A    +R   + LL
Sbjct  227  LMKENASLWEGSTLQKLLERDNTYCSGQMKTFVCKAVHIFQELGIWAAEYFIRASVEELL  286

Query  293  IHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLE  352
             H  V +   L   +  Y    ++K+ +   +       D             P +PK E
Sbjct  287  SHAYVHSKIDLDYDEREYLVNILSKSPVPDIDVHSTDPKDF------------PVSPKFE  334

Query  353  MLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQS  412
             L   L      + S  G+IF   R  A +++ +L           R    IG  NS+  
Sbjct  335  ALISFLMSTEDINFS--GLIFVEQRA-AVTVMSYLLSTHPSTRDRFRTGSFIGMSNSTNR  391

Query  413  THM-----TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
              M     + + Q + +  F+ G  NL+VAT V +EG+D+  C+VV+ Y +     S +Q
Sbjct  392  KTMLGDLLSAKMQPDTLDDFRYGRKNLIVATDVLKEGIDVSACSVVICYNIPKGFESFIQ  451

Query  468  ARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQA  516
             RGRAR   S Y+ + +        +   +  E +ME+A    ++  + 
Sbjct  452  RRGRARRQNSTYSMMLSTEDDGSTLDKWQK-FEKIMEEACLEDRRRTEE  499


>sp|Q4WKB5|MPH1_ASPFU ATP-dependent DNA helicase mph1 OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 
/ Af293) OX=330879 GN=mph1 PE=3 SV=1
Length=1101

 Score = 372 bits (954),  Expect = 3e-114, Method: Composition-based stats.
 Identities = 135/586 (23%), Positives = 229/586 (39%), Gaps = 77/586 (13%)

Query  4    RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQH  63
            R YQ+ +    L   N+++ LPTG GKT  AA +          A+++ +     LV Q 
Sbjct  290  RDYQFNIAQRGL-FHNLLVALPTGLGKTFIAATIMLNWYRWTKSAQIIFVAPTKPLVAQQ  348

Query  64   GEE-FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
                F+     R   T L+G+  P        +   +   T + L   L S       + 
Sbjct  349  ISACFQVAGIPRSETTMLTGEAAP-GIRAEEWKSKRVFFMTPQTLVNDLKS----GIADP  403

Query  123  TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLD---  179
                L+VVDE H       Y  ++       L+R     +VL LTA+PG+   S      
Sbjct  404  KRIVLLVVDEAHRATGGYAYVEVVKF-----LKRYNKSFRVLALTATPGSTVESVQAIID  458

Query  180  --GAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLM  237
              G     ++   +LD    +  ++   Q  ++S +             + F   L+ L+
Sbjct  459  DLGIAKVEIRTEQSLDIREYVHARDTEVQTFQNSDEMV--------LCMELFTRTLQPLV  510

Query  238  DQIHD----HLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALL-  292
            DQ+ +        P     FG     QQ +         G    R   L L+   +A+  
Sbjct  511  DQLRNLNAYWGRDPMALTAFGLTKARQQWM---------GSDAGRNANLALKGKVNAIFT  561

Query  293  -IHDTVRAVDALAA--LQDFY----HREHVTKTQILCAERRLLALFDDRKNELAHLA--T  343
             +     A+D L    +  FY    H +  T  Q     +R +   +  K  + HL   T
Sbjct  562  VLASLAHAIDLLKYHGITPFYRHLLHFQSNTDGQKGGKYQRQIVQDESFKKLMNHLQPWT  621

Query  344  HGPE---NPKLEMLEKILQRQF------------SSSNSPRGIIFTRTRQSAHSLLLWLQ  388
              P+   +PKLE L++++   F             S ++ R +IF   R SA  ++  L+
Sbjct  622  KNPDFIGHPKLEYLKQVVLNHFMDRGEGTAANGDQSQSATRIMIFVHFRDSAEEVVRVLK  681

Query  389  QQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIP  448
            + + L    IR  + +G  ++  S  M Q+ Q  ++QKF+ GT N +VATS+ EEGLDI 
Sbjct  682  RHEPL----IRPHVFVGQSSAKGSEGMDQKTQLSIVQKFKKGTYNTIVATSIGEEGLDIG  737

Query  449  HCNVVVRYGLLTNEISMVQARGRARADQSV-YAFVATEGSRELKRELINEALETLMEQAV  507
              +++V Y    + I M+Q  GR    ++     +  +G  E       +  E +     
Sbjct  738  EVDLIVCYDSSASPIRMLQRMGRTGRKRAGNIVLLLMQGKEEESYIKAKDNYEKM-----  792

Query  508  AAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQ  553
               Q+M  +  +    D +   +     +    E ++   PVE+ Q
Sbjct  793  ---QQMIASGTRFTFHDDKSPRILPPGVRP-VAEKRQIDIPVENTQ  834


>sp|B0XMV6|MPH1_ASPFC ATP-dependent DNA helicase mph1 OS=Aspergillus 
fumigatus (strain CBS 144.89 / FGSC A1163 / CEA10) OX=451804 
GN=mph1 PE=3 SV=1
Length=1101

 Score = 372 bits (954),  Expect = 3e-114, Method: Composition-based stats.
 Identities = 135/586 (23%), Positives = 229/586 (39%), Gaps = 77/586 (13%)

Query  4    RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQH  63
            R YQ+ +    L   N+++ LPTG GKT  AA +          A+++ +     LV Q 
Sbjct  290  RDYQFNIAQRGL-FHNLLVALPTGLGKTFIAATIMLNWYRWTKSAQIIFVAPTKPLVAQQ  348

Query  64   GEE-FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
                F+     R   T L+G+  P        +   +   T + L   L S       + 
Sbjct  349  ISACFQVAGIPRSETTMLTGEAAP-GIRAEEWKSKRVFFMTPQTLVNDLKS----GIADP  403

Query  123  TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLD---  179
                L+VVDE H       Y  ++       L+R     +VL LTA+PG+   S      
Sbjct  404  KRIVLLVVDEAHRATGGYAYVEVVKF-----LKRYNKSFRVLALTATPGSTVESVQAIID  458

Query  180  --GAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLM  237
              G     ++   +LD    +  ++   Q  ++S +             + F   L+ L+
Sbjct  459  DLGIAKVEIRTEQSLDIREYVHARDTEVQTFQNSDEMV--------LCMELFTRTLQPLV  510

Query  238  DQIHD----HLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALL-  292
            DQ+ +        P     FG     QQ +         G    R   L L+   +A+  
Sbjct  511  DQLRNLNAYWGRDPMALTAFGLTKARQQWM---------GSDAGRNANLALKGKVNAIFT  561

Query  293  -IHDTVRAVDALAA--LQDFY----HREHVTKTQILCAERRLLALFDDRKNELAHLA--T  343
             +     A+D L    +  FY    H +  T  Q     +R +   +  K  + HL   T
Sbjct  562  VLASLAHAIDLLKYHGITPFYRHLLHFQSNTDGQKGGKYQRQIVQDESFKKLMNHLQPWT  621

Query  344  HGPE---NPKLEMLEKILQRQF------------SSSNSPRGIIFTRTRQSAHSLLLWLQ  388
              P+   +PKLE L++++   F             S ++ R +IF   R SA  ++  L+
Sbjct  622  KNPDFIGHPKLEYLKQVVLNHFMDRGEGTAANGDQSQSATRIMIFVHFRDSAEEVVRVLK  681

Query  389  QQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIP  448
            + + L    IR  + +G  ++  S  M Q+ Q  ++QKF+ GT N +VATS+ EEGLDI 
Sbjct  682  RHEPL----IRPHVFVGQSSAKGSEGMDQKTQLSIVQKFKKGTYNTIVATSIGEEGLDIG  737

Query  449  HCNVVVRYGLLTNEISMVQARGRARADQSV-YAFVATEGSRELKRELINEALETLMEQAV  507
              +++V Y    + I M+Q  GR    ++     +  +G  E       +  E +     
Sbjct  738  EVDLIVCYDSSASPIRMLQRMGRTGRKRAGNIVLLLMQGKEEESYIKAKDNYEKM-----  792

Query  508  AAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQ  553
               Q+M  +  +    D +   +     +    E ++   PVE+ Q
Sbjct  793  ---QQMIASGTRFTFHDDKSPRILPPGVRP-VAEKRQIDIPVENTQ  834


>sp|Q2URJ5|MPH1_ASPOR ATP-dependent DNA helicase mph1 OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=mph1 
PE=3 SV=2
Length=1129

 Score = 372 bits (955),  Expect = 4e-114, Method: Composition-based stats.
 Identities = 132/575 (23%), Positives = 221/575 (38%), Gaps = 56/575 (10%)

Query  4    RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQH  63
            R YQ+ +    L   N+++ LPTG GKT  AA +        + A+++ +     LV Q 
Sbjct  325  RDYQFNIAQKGL-FHNLLVALPTGLGKTFIAATIMLNWFRWTESAQIIFVAPTKPLVAQQ  383

Query  64   GEE-FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
                F      R   T L+G+  P        +   +   T + L   L S       + 
Sbjct  384  ISACFGIAGIPRSQTTMLTGEAAP-GIRAEEWQNKRVFFMTPQTLINDLKS----GIADP  438

Query  123  TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG--  180
                L+VVDE H       Y  ++       L+R     +VL LTA+PG+   S      
Sbjct  439  KRIVLLVVDEAHRATGGYAYVEVVKF-----LRRYNQSFRVLALTATPGSTVESVQAVID  493

Query  181  --AINHV-LQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLM  237
               I  V ++   +LD    +  +N   Q  ++S++      LC          L+ +L 
Sbjct  494  GLDIARVEIRTEQSLDIREYVHSRNTEVQTFKNSEEMV----LCMDLLSKTLQPLVDQLR  549

Query  238  DQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTV  297
                     P +   FG     QQ +            + +V A+         ++    
Sbjct  550  TLNAYWGRDPMMLTAFGLTKSRQQWMASDAGRNAHFGLKGKVNAIF-------TVLASLA  602

Query  298  RAVDALAA--LQDFY----HREHVTKTQILCAERRLLALFDDRKNELAHLA--THGPE--  347
             A+D L    +  FY    H +  T+ Q     +R +   +  K  + HL   T  PE  
Sbjct  603  HAIDLLKYHGITPFYRHLLHFQSNTEGQKGGKYQRQVVQDESFKKLINHLQPWTKNPEFI  662

Query  348  -NPKLEMLEKILQRQF------------SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQ  394
             +PKLE L+ ++   F             S +S R +IF   R SA  +   L++ + + 
Sbjct  663  GHPKLEYLKSVVLNHFMDAGEGSNGEASDSQSSTRIMIFVHFRDSAEEVTRVLKRYEPM-  721

Query  395  TVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV  454
               IR  + +G  ++  S  M Q+ Q +++QKF+ GT N +VATS+ EEGLDI   +++V
Sbjct  722  ---IRPHVFVGQSSAKGSEGMGQKTQLDIVQKFKKGTYNTIVATSIGEEGLDIGEVDLIV  778

Query  455  RYGLLTNEISMVQARGRARADQSV-YAFVATEGSRELKRELINEALETLMEQAVAAVQKM  513
             Y    + I M+Q  GR    ++     +  EG  E       +  E + +   +  +  
Sbjct  779  CYDSSASPIRMLQRMGRTGRKRAGNIVLLLMEGKEEESYIKAKDNYEKMQQMIASGSRFT  838

Query  514  DQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFP  548
               +   +I       +  +       EN  Q  P
Sbjct  839  FHDDISPRILPAGIRPVADKRHIDIPDENAEQSLP  873


>sp|A1CS00|MPH1_ASPCL ATP-dependent DNA helicase mph1 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=mph1 PE=3 SV=1
Length=1119

 Score = 369 bits (947),  Expect = 4e-113, Method: Composition-based stats.
 Identities = 131/582 (23%), Positives = 220/582 (38%), Gaps = 69/582 (12%)

Query  4    RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQH  63
            R YQ+ +    L   N+++ LPTG GKT  AA +          ++++ +     LV+Q 
Sbjct  307  RDYQFNITQRGL-FHNLLVALPTGLGKTFIAATIMLNWYRWTKSSQIIFVAPTKPLVSQQ  365

Query  64   GEE-FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
                F      R   T L+G+  P        +   +   T + L   L S       + 
Sbjct  366  ISACFGIAGIPRSQTTMLTGEAAP-GIRAEEWKAKRVFFMTPQTLINDLKS----GIADP  420

Query  123  TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLD---  179
                L+VVDE H       Y  ++       ++R     +VL LTA+PG+   S      
Sbjct  421  KRIVLLVVDEAHRATGGYAYVEVVKF-----IKRYNKSFRVLALTATPGSTVESVQAVID  475

Query  180  --GAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLM  237
                    ++   +LD    +  +N   Q  ++S +      LC          L+ +L 
Sbjct  476  GLDIAKVEIRTEQSLDIREYVHARNTDVQTFQNSDEMV----LCMDLFSRTLQPLVDQLC  531

Query  238  DQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALL--IHD  295
                   + P     FG     QQ + LS+          R     L+   +A+   +  
Sbjct  532  SLNAYWGKDPMALTPFGLTKARQQWM-LSD--------AGRNANYGLKGKVNAIFTVLAS  582

Query  296  TVRAVDALAA--LQDFY----HREHVTKTQILCAERRLLALFDDRKNELAHLA--THGPE  347
               A+D L    +  FY    H    T  Q     +R +   +  K  + HL   T  PE
Sbjct  583  LAHAIDLLKYHGITPFYRHLVHFRSNTDGQKGGKYQRQIVQDESFKKLMNHLQPWTKNPE  642

Query  348  ---NPKLEMLEKILQRQFSSSNS------------PRGIIFTRTRQSAHSLLLWLQQQQG  392
               +PKLE L++++   F  +               R ++F   R SA  ++  L++ + 
Sbjct  643  FIGHPKLEYLKQVVLNHFMDAGEGSGADGNHTRSATRIMVFAHFRDSAEEIVRVLKRYEP  702

Query  393  LQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNV  452
            L    IR  + +G  ++  S  M Q+ Q  ++QKF+ G  N +VATS+ EEGLDI   ++
Sbjct  703  L----IRPHVFVGQSSAKGSEGMDQKTQLSIVQKFKKGDYNTIVATSIGEEGLDIGEVDL  758

Query  453  VVRYGLLTNEISMVQARGRARADQSV-YAFVATEGSRELKRELINEALETLMEQAVAAVQ  511
            +V Y    + I M+Q  GR    ++     +  +G  E       +  E + E   +  +
Sbjct  759  IVCYDSSASPIRMLQRMGRTGRKRAGNIVLLLMQGKEEESYIRAKDNYEKMQEMIASGTR  818

Query  512  KMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQ  553
                    A   D     L       A  + ++   PVE+ Q
Sbjct  819  F-------AFHDDTSPRILPPGIRPTA--DKKQIDIPVENTQ  851


>sp|Q2VF18|DCL2_CRYPA Dicer-like protein 2 OS=Cryphonectria parasitica 
OX=5116 GN=DCL-2 PE=3 SV=1
Length=1451

 Score = 373 bits (958),  Expect = 1e-112, Method: Composition-based stats.
 Identities = 130/557 (23%), Positives = 231/557 (41%), Gaps = 61/557 (11%)

Query  1    MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVV-VLVNRVHL  59
            M+ R+YQ E++  +L+ +NII  + TG+GKT  A    K  LE +   +VV  L   V L
Sbjct  61   MDARAYQLEMLEASLK-ENIICAMDTGSGKTHVAILRIKAELEEMPEGQVVWFLTPTVSL  119

Query  60   VTQHGEEFRRMLDGRWTVTTLSGDMGPRA---GFGHLARCHDLLICTAELLQMALTSPEE  116
              Q     +  +    T      D         +        ++I T ++L  AL     
Sbjct  120  CAQQYAVVKAQIPSVQTKIVTGADKVDSWSSTTWDGALLNVKVIITTPQVLLDALL----  175

Query  117  EEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGAS  176
               V ++  +L+V DE HH +K+  Y+ +M ++      + +P+P++LGLTASP      
Sbjct  176  HGFVNISSLALMVFDEAHHCNKNHAYSRVMKEFYWESKTKHEPVPRILGLTASPVVR---  232

Query  177  KLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP---FGDLL  233
                 I+ + +L + LD  C  SP     +L  +SQ+P     + + + Q     F + L
Sbjct  233  ---SDISSLKRLESTLDAVC-RSPTRHREELIANSQRPALFSIIYNPKLQPYAAGFSESL  288

Query  234  KKLMDQIH--DHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVY-----------  280
             KLM   +  + LE P +      ++ ++   KL +A     ++E+R Y           
Sbjct  289  TKLMAARNKLNILEDPYVVS-LRAEISDRSRRKLEKA-----IKEKRTYVQDTMKSFCRR  342

Query  281  ----ALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKN  336
                A  L  +     I + +R       L   Y +   +K+        L  +F D   
Sbjct  343  SMEMAKELGAWAADWFISEAIRLF-----LAGIYRQGASSKSFRDAEVIFLARVFQDANI  397

Query  337  ELAH-LATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQT  395
            E    L TH   + K++ + ++L          R I F + R +   L   L     + +
Sbjct  398  EPPPPLTTHSGLSEKVQRIIEVLLNY---DKDARAICFVKERATTVVLSHILTTHPEVSS  454

Query  396  VDIRAQLLIGAGNSSQST----HMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN  451
               R   ++G             + +    + ++ F++G  N+LVATSV EEG+D+P CN
Sbjct  455  -KFRIGTMVGTSFVPGVKRDFLDLPETGGSQCLEAFREGRKNMLVATSVLEEGIDVPACN  513

Query  452  VVVRYGLLTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEAL-----ETLMEQA  506
            +++ +    N  + +Q RGRAR  QS       + +      L  +       E    + 
Sbjct  514  LIICFDKPNNLRAFIQRRGRARMRQSHLYLFVEDEAEADWEALEAQMKLQYEDEKREHER  573

Query  507  VAAVQKMDQAEYQAKIR  523
            + A++  +  +Y  ++R
Sbjct  574  LEAIENSEALDYPEELR  590


>sp|A2Q8R2|MPH1_ASPNC ATP-dependent DNA helicase mph1 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=mph1 PE=3 SV=2
Length=1124

 Score = 368 bits (945),  Expect = 1e-112, Method: Composition-based stats.
 Identities = 129/576 (22%), Positives = 223/576 (39%), Gaps = 58/576 (10%)

Query  4    RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQH  63
            R YQ+ +    L   N+++ LPTG GKT  AA +          A++V +     LV Q 
Sbjct  322  RDYQFNIAQKGL-FHNLLVALPTGLGKTFIAATIMLNWFRWTKDAQIVFVAPTKPLVAQQ  380

Query  64   GEE-FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
                F      R   T L+G+  P        +   +   T + L   L    +    + 
Sbjct  381  ISACFEVAGIPRSQTTMLTGEAAP-GIRAEEWKAKRVFFMTPQTLINDL----KTGIADP  435

Query  123  TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG--  180
                L+VVDE H       Y  ++       L+R     +VL LTA+PG+   S      
Sbjct  436  KRIVLVVVDEAHRATGGYAYVEVVKF-----LRRYNQSFRVLALTATPGSTVESVQAVID  490

Query  181  --AINHV-LQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLM  237
               I+ V ++   +LD    +  ++   Q  ++S++      LC          LL +L 
Sbjct  491  GLDISRVEIRTEQSLDIREYVHSKDTDVQTFQNSEEMV----LCMDLMSKALQPLLDQLR  546

Query  238  DQIHDHLEMPELSRKFG-TQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDT  296
                     P     +G T+  +Q ++  S   A  G++ +              ++   
Sbjct  547  STNAYWGRDPMGLTAYGLTKARQQWMLSDSGRNAHFGVKAKMNAIFT--------VLASL  598

Query  297  VRAVDALAA--LQDFY----HREHVTKTQILCAERRLLALFDDRKNELAHLA--THGPE-  347
               +D L    +  FY    H +  T+ Q     +R +   +  K  + HL   T  PE 
Sbjct  599  AHGIDLLKYHGITPFYRHLLHFQSNTEGQKGGKYQRQVVQDESYKKLMNHLQPWTKNPEF  658

Query  348  --NPKLEMLEKILQRQF------------SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGL  393
              +PKLE L++++   F                + R +IF   R SA  +   L++ + +
Sbjct  659  IGHPKLEYLKQVVLNHFMDAGEGSGADENKDQPATRVMIFVHFRDSAEEVTRVLKRYEPM  718

Query  394  QTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV  453
                IR  + +G  ++  S  M Q+ Q +++QKF+ GT N +VATS+ EEGLDI   +++
Sbjct  719  ----IRPHVFVGQSSAKGSEGMGQKTQLDIVQKFKKGTYNTIVATSIGEEGLDIGEVDLI  774

Query  454  VRYGLLTNEISMVQARGRARADQSV-YAFVATEGSRELKRELINEALETLMEQAVAAVQK  512
            V Y    + I M+Q  GR    +S     +  +G  E       +  E + +   +  + 
Sbjct  775  VCYDSSASPIRMLQRMGRTGRKRSGKITLLLMQGKEEESYIKAKDNYEKMQQMIASGTRF  834

Query  513  MDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFP  548
                +   +I       +  + A     EN  +  P
Sbjct  835  TFHDDMSPRILPPGVRPVADKRAIDIPEENTVRDLP  870


>sp|Q2UNX5|DCL2_ASPOR Dicer-like protein 2 OS=Aspergillus oryzae 
(strain ATCC 42149 / RIB 40) OX=510516 GN=dcl2 PE=3 SV=1
Length=1377

 Score = 372 bits (955),  Expect = 1e-112, Method: Composition-based stats.
 Identities = 144/651 (22%), Positives = 237/651 (36%), Gaps = 97/651 (15%)

Query  3    LRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETV-DGAKVVVLVNRVHLVT  61
             R YQ+E+   +L+ +NII+ + TG GKT+ A       LE          L   V L  
Sbjct  16   PRQYQYEMFEASLK-ENIIVAMDTGTGKTQIALLRIAHQLEGGGPRKLTWFLTPTVALCL  74

Query  62   QHGEEFRRMLDGRWTVTTLSGD----MGPRAGFGHLARCHDLLICTAELLQMALTSPEEE  117
            Q  E  R  L      T    D       +  +  L +   +++ T  +L  ALT     
Sbjct  75   QQYEVIRSHLPAVRACTITGLDKVERWKSQYIWDELLKDKQVVVSTHAVLFEALT----H  130

Query  118  EHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRA--QPLPQVLGLTASPGTGGA  175
              V ++   L++ DE HH  +    N+IM  +    L++     +P +LGLTASP     
Sbjct  131  GFVRISQLGLLIFDEAHHCMRRHPANMIMLDFYHPTLRKHGRDSVPCILGLTASPVVRSK  190

Query  176  SKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKK  235
            S+       +  L +NLD+ C  +PQ    +L  ++ +P     +C    + P G  L+ 
Sbjct  191  SQ------EMKTLESNLDSIC-KTPQVHKQELTTYAHRPELLPIICKAIDEGPGGRALQA  243

Query  236  L------MDQIHDHLEMPELSRKF-GTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN  288
            L       D   D   +P+      G+  Y+  +V+            + +    ++R+ 
Sbjct  244  LEHAWDTADIDGDPDAIPQNGSLLNGSGEYKALMVR------------KTLCNEQIKRFV  291

Query  289  DALLIHDTVRAVDALAA-LQDFYHREHVTKTQILCAERRLLALFDDRKNE-LAHLATHGP  346
            D      +      L     D+Y    V + +    ++ L   ++D +   L++  +  P
Sbjct  292  D-----RSRHIFAELGEWAADYYICTSVEQLRTTIRDQSLTMDWEDEERAYLSNFLSKLP  346

Query  347  E---------------NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQ  391
                            +PKL  L   L +         G+IF + R +   L   L    
Sbjct  347  VAEVQANLADPNNFTMSPKLAALINFLDKF--DDPEFSGLIFVKQRVTVSVLARLLSLHP  404

Query  392  GLQTVDIRAQLLIGAGNSSQSTHM-----TQRDQQEVIQKFQDGTLNLLVATSVAEEGLD  446
              +    R    +G    S    M       + Q+  +  F+ G  NL+V TSV EEG+D
Sbjct  405  QTR-DRFRCAAYVGMSVGSCRQDMVGDWHNAKKQRGTMDDFRSGRKNLIVTTSVLEEGID  463

Query  447  IPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQA  506
            +  C VVV +    N  S +Q RGRAR  +S YA + +                      
Sbjct  464  VTACRVVVCFDKPANLKSFIQRRGRARQQKSTYAIMFSTADEHGD---------------  508

Query  507  VAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQLLCINCMVAVGHG  566
            +   Q ++QA  +A   + ++  L +  AQ A  EN  +   VE                
Sbjct  509  LRRWQILEQAMVEAYQDEERR--LREAEAQEAVDENVPEMITVE---------ATGAVIT  557

Query  567  SDLRKVEGTHHVNVNPNFSNYYNVSRDPVVINKVFKDWKPGGVISCRNCGE  617
             D       H   V P     Y  +R      K  +     G +   +C  
Sbjct  558  PDSVVTHLYHFCAVLPE--ERYVDNRPEFSFEKDRQGL-IKGTVILPSCVH  605


>sp|Q0CWI2|MPH1_ASPTN ATP-dependent DNA helicase mph1 OS=Aspergillus 
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=mph1 
PE=3 SV=2
Length=1100

 Score = 366 bits (940),  Expect = 3e-112, Method: Composition-based stats.
 Identities = 135/577 (23%), Positives = 226/577 (39%), Gaps = 60/577 (10%)

Query  4    RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQH  63
            R YQ+ +    L   N+++ LPTG GKT  AA +          A++V +     LV Q 
Sbjct  311  RDYQFNITQKGL-FHNLLVALPTGLGKTFIAATIMLNWFRWTRDAQIVFVAPTKPLVAQQ  369

Query  64   GEE-FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
                F      R   T L+G+  P        +   +   T + L   L S       + 
Sbjct  370  VSACFGVAGIPRSQTTMLTGEAAP-GIRAQEWQDKRVFFMTPQTLINDLKS----GIADP  424

Query  123  TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGAS---KLD  179
                L+VVDE H       Y  ++       L+R     +VL LTA+PG+   S    +D
Sbjct  425  KRIVLLVVDEAHRATGGYAYVEVVKF-----LRRYNQSFRVLALTATPGSTVESVQAVID  479

Query  180  GAI--NHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLM  237
            G       ++   +LD    +  +N   Q  ++S++      LC          L+ +L 
Sbjct  480  GLEISKVEIRTEQSLDIREYVHARNTEVQTFKNSEEMV----LCMDLLSKTLQPLVDQLR  535

Query  238  DQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALL--IHD  295
                     P     +G     QQ + LS+          R  +  L+   +A+   +  
Sbjct  536  TLNAYWGRDPMALTAYGLTKSRQQWM-LSD--------AGRNSSFGLKGKVNAIFTVLAS  586

Query  296  TVRAVDALAA--LQDFY----HREHVTKTQILCAERRLLALFDDRKNELAHLA--THGPE  347
                +D L    +  FY    H +  T  Q     +R +   +  K  + HL+  T  PE
Sbjct  587  LAHGIDLLKYHGITPFYRHLLHFQGNTDGQKGGKYQRQIVQDEHFKKLMNHLSPWTKNPE  646

Query  348  ---NPKLEMLEKILQRQF------------SSSNSPRGIIFTRTRQSAHSLLLWLQQQQG  392
               +PKLE L++++   F            +S ++ R +IF   R SA  +   L++ + 
Sbjct  647  FIGHPKLEYLKQVVLNHFMDAGEGSAGAEGASQSTTRVMIFVHFRDSAEEVARVLKRYEP  706

Query  393  LQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNV  452
            +    IR Q+ +G  ++  S  M Q+ Q  V+QKF+ GT N +VATS+ EEGLDI   ++
Sbjct  707  M----IRPQVFVGQASAKGSDGMNQKTQLGVVQKFKQGTYNTIVATSIGEEGLDIGEVDL  762

Query  453  VVRYGLLTNEISMVQARGRARADQSV-YAFVATEGSRELKRELINEALETLMEQAVAAVQ  511
            +V Y    + I M+Q  GR    ++     +  EG  E       +  E + +   +  +
Sbjct  763  IVCYDSSASPIRMLQRMGRTGRKRAGNIVLLLMEGKEEESYIKAKDNYEKMQQMIASGTR  822

Query  512  KMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFP  548
                 +   +I       +  +       EN+ Q  P
Sbjct  823  FTFHDDKSPRILPPGVKPIVDKRHIDIPEENEEQALP  859


>sp|Q0UI93|DCL1_PHANO Dicer-like protein 1 OS=Phaeosphaeria nodorum 
(strain SN15 / ATCC MYA-4574 / FGSC 10173) OX=321614 GN=DCL1 
PE=3 SV=2
Length=1522

 Score = 364 bits (934),  Expect = 4e-109, Method: Composition-based stats.
 Identities = 132/530 (25%), Positives = 216/530 (41%), Gaps = 67/530 (13%)

Query  3    LRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLE--TVDGAK------VVVLV  54
             R YQ E+ + A + +N I  L TG GKT  A  + +  LE    + AK         LV
Sbjct  69   PRDYQMELFLRA-KMQNTIAVLDTGTGKTHIATLLLRHVLEEELENRAKGCAHKMAFFLV  127

Query  55   NRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGP----RAGFGHLARCHDLLICTAELLQMA  110
            + V+LV Q     R  LD    V  +SG MG     +  +  L   + +++CTA++L   
Sbjct  128  DSVNLVFQQANVLRCGLDQ--GVEGISGAMGQSLFQKQTWDKLFAVNMVIVCTAQVLVDC  185

Query  111  LTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASP  170
            +        + ++  +L++ DE HH   +  Y  +M  Y   +L  +   P++  +TASP
Sbjct  186  MM----HSFMSISRMNLLIFDEAHHAKSNHPYARVMKDYYAHELDTS-KRPRIFAMTASP  240

Query  171  GTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFG  230
                    +       +L   L +    +  +     +    +P ++    + R ++ F 
Sbjct  241  VDVKGQSAEHVREAARELETLLHSRIATTSDSALA--RNSITRPEEEVA-VYTRLRNEFE  297

Query  231  DLLKKLMDQ------------IHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQR  278
              L + +              I   L   EL R + + MY        ++  L  ++E+ 
Sbjct  298  TPLHQKVKAKYGDVAPFRKLFITAKLHASELGR-WASDMYWSFAFADEQSRKL-QIREEL  355

Query  279  VYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNEL  338
             Y    R ++ A L     R  +A A +Q +         Q L                 
Sbjct  356  KYNRSKRDWSAAELDAQMARLKEATAFVQQYEIGAPTLSEQDL-----------------  398

Query  339  AHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI  398
                     + K+  L+  L   +  +   R I+F   R +A  L L      G    ++
Sbjct  399  ---------SSKVMKLQYWLNLYYERTTLARCIVFVEKRHTAQLLKLIFDHIGG---PNL  446

Query  399  RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL  458
               +L+G  N +   +++ R Q   +QKF+ G LN L ATSVAEEGLDIP CN+VVR+ L
Sbjct  447  HCDVLVGINNRAGEENVSLRSQILTLQKFRRGELNCLFATSVAEEGLDIPQCNLVVRFDL  506

Query  459  LTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEAL-ETLMEQAV  507
                I  VQ+RGRAR   S Y  +    ++E    L+N    E +M +  
Sbjct  507  YRTMIGYVQSRGRARHRNSKYLHMLEAENKEHTERLMNARHDENIMREFC  556


>sp|A2R345|DCL21_ASPNC Dicer-like protein 2-1 OS=Aspergillus niger 
(strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) OX=425011 
GN=dcl2-1 PE=3 SV=2
Length=1387

 Score = 362 bits (929),  Expect = 6e-109, Method: Composition-based stats.
 Identities = 124/579 (21%), Positives = 220/579 (38%), Gaps = 64/579 (11%)

Query  2    ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVT  61
              RSYQ E+   +L+ +NII+ + TG+GKT  A     + LE+     +  L   V L  
Sbjct  18   RPRSYQVEMFEASLK-ENIIVTMGTGSGKTHIALLRIIKELESNPHKLIWFLTPTVALCL  76

Query  62   QHGEEFRRMLDGRWTVTTLSGD----MGPRAGFGHLARCHDLLICTAELLQMALTSPEEE  117
            Q  +     +      T  S D       +  +  + +   +++ T  +L  A++     
Sbjct  77   QQFKFLSDNIPAVRARTLTSLDKVELWTEQPVWDAILKEMQVVVSTHAVLADAMS----H  132

Query  118  EHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQR--AQPLPQVLGLTASPGTGGA  175
              V++T   L++ DE HH  +    N IM  +    L+R  A+ +P++LGLTASP     
Sbjct  133  GFVKITQLGLMIFDEAHHCMRRHPANKIMQDFYHPALERHGAEAVPKILGLTASPVVRSN  192

Query  176  SKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKK  235
             +       +L++ +NLD  C  +P+    +L  H+ +P  Q  L      D      K 
Sbjct  193  RQ------ELLKIESNLDAVC-KTPRTHRSELMTHTHRPHLQQILFTPVLLDDLQVGSKT  245

Query  236  LMDQIHDHLEMPELSRKFGTQMYEQQVVK--LSEAAALAGLQEQRVYAL-HLRRYNDALL  292
            L   +     +     +     Y +++ K  L   A    L+  + Y    L+R+     
Sbjct  246  LKALVSAWTSL-----RLEDDPYIKKLRKSPLDGRALQKVLESGKTYCNDQLKRFAT---  297

Query  293  IHDTVRAVDALAA-LQDFYHREHVTKTQILCAERRLLALFDDRKNE-----LAHLATHG-  345
               ++   + L     D++    + + +           + D +       ++ L     
Sbjct  298  --RSLHIFEELGEWAADYFIHASIEQLKARAGNSADTMGWTDEEKAYLLDIVSKLPIPNI  355

Query  346  ----------PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQT  395
                      P + K   L + L        +  G+IF + R +   +   L     +  
Sbjct  356  DLTHSDPDRIPISSKFRSLLEFLDT--KGEPNFSGLIFAKQRATVSVMEKLLS-IHPVTK  412

Query  396  VDIRAQLLIGAGNSSQSTHMTQ----RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN  451
               R    +G         + +    R Q++ + +F+ G  NL++AT V EEG+DI  C+
Sbjct  413  HRFRCASFVGWSGGGSKDVLGELLDARMQRDTLSEFRTGQKNLIIATDVLEEGIDISACS  472

Query  452  VVVRYGLLTNEISMVQARGRARADQSVYAFVATEGSRELK----RELINEALETLMEQAV  507
            VVV +    N  S VQ RGRAR  QS YA +              +L    +E   +   
Sbjct  473  VVVCFDKPPNLKSFVQRRGRARHRQSTYAIMFATDDESSALSKWEDLEQAMIEAYEDDER  532

Query  508  A-----AVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRE  541
                  A++ +++   +        A LT   A A    
Sbjct  533  RLREAWALEAINEEVVERLEVQSTGAVLTADTAVAHLNH  571


>sp|A4RHU9|DCL2_PYRO7 Dicer-like protein 2 OS=Pyricularia oryzae 
(strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 GN=DCL2 
PE=3 SV=3
Length=1485

 Score = 362 bits (930),  Expect = 1e-108, Method: Composition-based stats.
 Identities = 136/563 (24%), Positives = 230/563 (41%), Gaps = 63/563 (11%)

Query  4    RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG-AKVVVLVNRVHLVTQ  62
            R+YQ E+   +++ +NII+ + TG+GKT+ A    +  LE      +V  L   V L  Q
Sbjct  66   RAYQLEMFQASMQ-QNIIVSMDTGSGKTQVAVLRIRAELERTPPEKRVWFLAPTVALCAQ  124

Query  63   HGEEFRRMLDGRWTVTTLSGD----MGPRAGFGHLARCHDLLICTAELLQMALTSPEEEE  118
              E  R  +    ++     D          +  +     +++CT  +L  AL+      
Sbjct  125  QYEVIRSQIKVANSIVMTGDDNVDSWSDVQTWDAVLANVRVVVCTYMILFEALS----HA  180

Query  119  HVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKL  178
             V +   SL+V+DE H+        +IM ++   +      +P +LGLTASP       +
Sbjct  181  FVTMDSISLLVMDEAHNCTGKFPGRLIMKRFYMPRKSAGDHVPHILGLTASPV------M  234

Query  179  DGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQP---CKQYNLCHRRSQDPFGDLLKK  235
               ++ +  L ++LD+ C   P     +L  +  QP      Y  C  RS   +     +
Sbjct  235  KSDLSSMEDLESSLDSVC-RGPTLQREELFANVHQPTMTVTTYKECDLRSPVQY----TR  289

Query  236  LMDQIHDHLEMPELSRK-----FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDA  290
             M+ +H   E  +++          Q   + + +L           Q      L+R + +
Sbjct  290  NMNNLHLAFENLDIAEDPYVLHLMGQRTPKSLRELDRILTKLDTYTQNQ-MKALQRKSSS  348

Query  291  LLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG-----  345
            L       AVD+       Y    V K   L A    L  + D +    H A  G     
Sbjct  349  LFRELGQWAVDS-------YIYNVVEKVSNLDARSSWLGGWLDDEQRYLHRAIQGINALP  401

Query  346  -------PE--NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTV  396
                   PE  + KL++L +IL+       SP GI+F + R +A  L   L     +   
Sbjct  402  VSAAIPAPEMTSIKLQVLLRILRGY---EGSPVGIVFVKERATAGILSQLLAIIPDINA-  457

Query  397  DIRAQLLIGAG-----NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN  451
              +   ++G         +    + Q D    ++KF+ G +NLLVATSV EEG+D+P CN
Sbjct  458  RYKVGCMVGTSRYMSRKMNIHEVLQQGDDLLALEKFRSGAINLLVATSVLEEGIDVPVCN  517

Query  452  VVVRYGLLTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAA-V  510
            +V+ + +  N  S +Q RGRAR  +S    +  E S    ++    ALE  M+Q     +
Sbjct  518  LVICFDMPANLKSFIQRRGRARMRESKLHLMIEEDSLVSVKDW--GALEAAMKQRYENDM  575

Query  511  QKMDQAEYQAKIRDLQQAALTKR  533
            +++D      +  ++    L  R
Sbjct  576  RELDHLAQVEEEDEMDVPPLHSR  598


>sp|Q5N870|DCL3A_ORYSJ Endoribonuclease Dicer homolog 3a OS=Oryza 
sativa subsp. japonica OX=39947 GN=DCL3A PE=2 SV=1
Length=1651

 Score = 364 bits (933),  Expect = 1e-108, Method: Composition-based stats.
 Identities = 119/521 (23%), Positives = 212/521 (41%), Gaps = 53/521 (10%)

Query  1    MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVD----GAKVVVLVNR  56
               R YQ +V   A+  +N I  L TGAGKT  A  + K   +       G  ++ L   
Sbjct  30   FTPRRYQLDVYEVAMR-RNTIAMLDTGAGKTMIAVMLIKEFGKINRTKNAGKVIIFLAPT  88

Query  57   VHLVTQHGEEFRRMLDGR----WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALT  112
            V LVTQ  E      D      +    +    GPR  +      + +++ T ++   AL 
Sbjct  89   VQLVTQQCEVIEIHTDFEVEQYYGAKGVDQWTGPR--WQEQISKYQVMVMTPQVFLQAL-  145

Query  113  SPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGT  172
                   + L + SL++ DECHH   +  Y  IM ++      +++  P V G+TASP  
Sbjct  146  ---RNAFLILDMVSLMIFDECHHATGNHPYTRIMKEFYH----KSEHKPSVFGMTASPVI  198

Query  173  GGA-SKLDGAINHVLQLCANLDTWCI-MSPQNCCPQLQEHSQQPCKQYN---LCHRRSQD  227
                S          +L   LD     +S +         +++ C+ Y+   +C     +
Sbjct  199  RKGISSHLDCEGQFCELENLLDAKIYTVSDREEIEFCVPSAKEMCRYYDSKPVCFEDLSE  258

Query  228  PFG-----------DLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQE  276
              G           +L  K  D   D  ++ + S++  ++   +    L +   +   + 
Sbjct  259  ELGVLCSKYDALITELQNKRSDMYKDADDITKESKRRLSKSIAKICYCLDDVGLICASEA  318

Query  277  QRVYALHLRRYNDALLIHDTVRAVDA--------LAALQDFYHREHVTKTQILCAE--RR  326
             ++    + R  +   + + V A D         L A     H +   +   L  +  ++
Sbjct  319  TKIC---IERGQEKGWLKEVVDATDQQTDANGSRLFAENSALHMKFFEEALHLIDKRLQQ  375

Query  327  LLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLW  386
             + +  + ++     A  G  +PKL  L +I    FS+S   R +IF   + +A  +   
Sbjct  376  GIDMLLNSESGCVEAAKTGYISPKLYELIQIFH-SFSNSRHARCLIFVDRKITARVIDRM  434

Query  387  LQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLD  446
            +++   L         L G  +S  +  +T + Q++ +  F+ G +NLL  T VAEEG+ 
Sbjct  435  IKKIGHLAH--FTVSFLTGGRSSVDA--LTPKMQKDTLDSFRSGKVNLLFTTDVAEEGIH  490

Query  447  IPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFVATEGS  487
            +P C+ V+R+ L     S VQ+RGRAR + S Y  +   G+
Sbjct  491  VPECSCVIRFDLPRTTRSYVQSRGRARQEDSQYILMIERGN  531


>sp|Q2H0G2|DCL1_CHAGB Dicer-like protein 1 OS=Chaetomium globosum 
(strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / 
NRRL 1970) OX=306901 GN=DCL1 PE=3 SV=2
Length=1607

 Score = 362 bits (928),  Expect = 4e-108, Method: Composition-based stats.
 Identities = 142/602 (24%), Positives = 227/602 (38%), Gaps = 102/602 (17%)

Query  2    ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETV--------DGAKVVVL  53
              R YQ E+   A + +N I  L TG+GKT  AA + +  ++                 L
Sbjct  134  SPRDYQLELFERA-KTQNTIAVLDTGSGKTLIAALLLRWTIQNELEDRSKRLPKRIAFFL  192

Query  54   VNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAG---FGHLARCHDLLICTAELLQMA  110
            V++V LV Q        LD  + +    GDM        +      +  ++CTAE+L   
Sbjct  193  VDKVALVFQQHAVLACNLD--YPLEKFCGDMVEDVTQDFWHKTFDENMAIVCTAEILYQC  250

Query  111  LTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASP  170
            LT      ++ +   +L+V DE HHT K+  Y  I+  +        + L     +TASP
Sbjct  251  LT----HSYIRMDQVNLLVFDEAHHTKKNHPYARIIKDFYAEVKDLNKRLRISRAMTASP  306

Query  171  GTG-------GASKLDGAINHVLQLCAN----------LDTWCIMSPQNCCPQLQEHSQQ  213
                       + +L+G ++  +   A+          L     +    C P+ +    +
Sbjct  307  VDAQIDPKIARSPELEGLLHSQIATVADPTALHNSSTKLKREVTVEYGKCLPEFETGLNR  366

Query  214  PCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAG  273
              K     HR  Q PF                                      A+ L  
Sbjct  367  ALKDLVGEHRLFQKPFAFTATA--------------------------------ASELGP  394

Query  274  LQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD  333
                R + L  R      L   T R +           R+     +I     ++      
Sbjct  395  WCADRYWQLFFRGEEVVKLEAKTEREI----------LRKSAYSQEIAAQVNKVREAHRL  444

Query  334  RKNELAHLATHGPENPKLEMLEKILQRQFSS-SNSPRGIIFTRTRQSAHSLLLWLQQQQG  392
                     +    + K+ +L +IL+ +F    +  R I+F R R  A  L   LQQ   
Sbjct  445  VGQHEFASPSSDLLSSKVVILLRILRGEFRGVDHKRRCIVFVRQRNVASLLTDLLQQ-PE  503

Query  393  LQTVDIRAQLLIGAGNSSQSTH---MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPH  449
            ++   +   +L+G G    S     +T RDQ   I KF+ G LN + ATSVAEEGLDIP 
Sbjct  504  MRIPGLEPGILVGGGRPEASYDNAKVTYRDQVLTIIKFKKGELNCIFATSVAEEGLDIPD  563

Query  450  CNVVVRYGLLTNEISMVQARGRARADQSVYAFVATEGSRELKRELI-NEALETLMEQAVA  508
            CNV++RY L    I  +Q+RGRAR + S+Y  +    + E  +++  N+  E  + +   
Sbjct  564  CNVIIRYDLNNTLIQYIQSRGRARQEGSIYIHMVESENEEHVKKVCQNQESEDALRKFCE  623

Query  509  AV--------QKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQLLCINCM  560
            A+           D   +  K +D +Q  + +  A    R N +Q        L+C+   
Sbjct  624  ALPADRKLTGNNFDMEYFLRKEKDQRQYTVPETGA----RLNYKQ-------SLICLAAF  672

Query  561  VA  562
            VA
Sbjct  673  VA  674


>sp|Q7XD96|DCL3B_ORYSJ Endoribonuclease Dicer homolog 3b OS=Oryza 
sativa subsp. japonica OX=39947 GN=DCL3B PE=3 SV=2
Length=1637

 Score = 361 bits (925),  Expect = 1e-107, Method: Composition-based stats.
 Identities = 132/558 (24%), Positives = 223/558 (40%), Gaps = 46/558 (8%)

Query  3    LRSYQW-EVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETV-----DGAKVVVLVNR  56
             R+ Q  EV   AL G N I  L TG+GKT  A  +A+ H   V         VV L   
Sbjct  38   PRTSQLVEVFEAALRG-NTIAVLDTGSGKTMVAVMLAREHARRVRAGEAPRRIVVFLAPT  96

Query  57   VHLVTQHGEEFRRMLDGRWTV---TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTS  113
            VHLV Q  E  R   D    +    +  G+ G    +      +++++ T ++L  AL  
Sbjct  97   VHLVHQQFEVIREYTDLDVMMCSGASRVGEWGAD-HWKEEVGRNEIVVMTPQILLDAL--  153

Query  114  PEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTG  173
                  + ++  SL++ DECH       Y  IM ++       +Q  P V G+TASP   
Sbjct  154  --RHAFLTMSAVSLLIFDECHRACGSHPYARIMKEFY----FGSQWRPDVFGMTASPVAT  207

Query  174  G-ASKLDGAINHVLQLCANLDTWC-IMSPQNCCPQLQEHSQQPCKQYNLCH---------  222
              AS L     H+ QL   LD    I+  +N        +    K Y+            
Sbjct  208  KGASTLHNCEAHISQLELTLDAKIYIVEDRNELESFSPPTTIVNKYYDAYMVDFDNLKSK  267

Query  223  -RRSQDPFGDLLKKLMDQ----IHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQ  277
             +   D F  LL  L +       D   + E SRK  ++ + + +  L++   L  +   
Sbjct  268  LQIFSDEFDSLLVGLQESPSNKFKDTDNILETSRKSLSRYHGKILYSLND---LGPIITS  324

Query  278  RVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNE  337
             V  +H+          D + +  +L  L   Y +E ++  + +  +     +  +  +E
Sbjct  325  EVVKIHIESVKPLCDSEDCIFSKASL-CLHMSYFKEALSLIEEILPQGYGELMKSESGSE  383

Query  338  LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD  397
               L   G  + K+  L  I  + F SSN    +IF     +A ++  +++         
Sbjct  384  E--LTKRGYISSKVNTLINIF-KSFGSSNEVLCLIFVDRIITAKAVERFMRGIVNFSCFS  440

Query  398  IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG  457
            I    L G   S  +  ++   Q+  +  F+ G +NLL  T V EEG+D+P+C+ V+R+ 
Sbjct  441  IS--YLTGGSTSKDA--LSPAVQRFTLDLFRAGKVNLLFTTDVTEEGVDVPNCSCVIRFD  496

Query  458  LLTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAE  517
            L     S VQ+RGRAR + S +  +   G+ + +  +          +  A  +  +   
Sbjct  497  LPRTVCSYVQSRGRARRNNSEFILMIERGNLQQQEHIFRMIQTGYYVKNCALYRHPNALS  556

Query  518  YQAKIRDLQQAALTKRAA  535
            Y   I+ +    +    A
Sbjct  557  YDLSIQGMYTYQVQSTGA  574


>sp|Q7S8J7|DCL1_NEUCR Dicer-like protein 1 OS=Neurospora crassa 
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / 
FGSC 987) OX=367110 GN=dcl-1 PE=2 SV=1
Length=1584

 Score = 356 bits (913),  Expect = 4e-106, Method: Composition-based stats.
 Identities = 147/568 (26%), Positives = 243/568 (43%), Gaps = 73/568 (13%)

Query  2    ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHL--------ETVDGAKVVVL  53
              R YQ E+   A + +N I  L TG+GKT  AA + +  +        + +       L
Sbjct  121  SPREYQVELFERA-KQQNTIAVLDTGSGKTLIAAMLLRWVITGELEDREKGLPRRIAFFL  179

Query  54   VNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGP----RAGFGHLARCHDLLICTAELLQM  109
            V++V LV Q      + LD  + +  L G+M      +A +      +++++CTAE+L  
Sbjct  180  VDKVALVFQQHSFLTKNLD--FPMEKLCGEMVEGVESKAFWKEALEQNEVVVCTAEILST  237

Query  110  ALTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS  169
            AL        + +   +L++ DE HHT KD  Y  I+  +     ++ +  P++LGLTAS
Sbjct  238  AL----HHSWIRMDQINLLIFDEAHHTKKDHPYARIIKNFY--IDEQLERRPRILGLTAS  291

Query  170  PGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPF  229
            P          A      L + + T            LQ    +P  +  + + R +   
Sbjct  292  PVDAKVDPRRAAAELEALLHSQIATA------ADPAALQHTICKPKTELVVEYVRGRPDS  345

Query  230  GDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND  289
              +L K + ++    E+ +    F T          S A+ L      R + L  ++ + 
Sbjct  346  ETVLNKQLRKLVGGQELFKKPLNFTT----------SAASKLGTWCADRYWQLFFKQEDI  395

Query  290  ALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGP---  346
              L   T R +  +AAL +   + HV + +                +EL +  T  P   
Sbjct  396  VKLESRTERDLMKVAALDEITEK-HVKQVR--------------EAHELVNAHTFSPAAL  440

Query  347  ----ENPKLEMLEKILQRQFSSS-NSPRGIIFTRTRQSAHSLLLWLQQQQGLQT-VDIRA  400
                 + K+ ML +IL+ QF     + R IIF R R +A  L   LQQ +       I A
Sbjct  441  DPTMLSSKVIMLVRILRDQFERGVGAQRCIIFVRQRNTAMLLADLLQQPEIKSHIPSIAA  500

Query  401  QLLIG---AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG  457
            ++L+G    G+S  +  +  + Q  +I+KF+ G +N L ATSVAEEGLDIP CN+V+R+ 
Sbjct  501  EVLVGGGTTGSSYVNAKINFQQQNRIIRKFKLGEINCLFATSVAEEGLDIPDCNIVIRFD  560

Query  458  LLTNEISMVQARGRARADQSVYAFVATEGSREL---------KRELINEALETLMEQAVA  508
            L    I  +Q+RGRAR   S Y  +  +G+ E            +++ +  E L E    
Sbjct  561  LYDTLIQCIQSRGRARRPDSRYIQMIEKGNYEHHSRILRAKGAEDVLRKFCEALPEDRKL  620

Query  509  AVQKMDQAEYQAKIRDLQQAALTKRAAQ  536
                M+      K +  +Q  +    A+
Sbjct  621  TGNHMNLDYLLRKEKGKRQYTVPDTGAK  648


>sp|Q0UL22|DCL2_PHANO Dicer-like protein 2 OS=Phaeosphaeria nodorum 
(strain SN15 / ATCC MYA-4574 / FGSC 10173) OX=321614 GN=DCL2 
PE=3 SV=2
Length=1399

 Score = 353 bits (906),  Expect = 1e-105, Method: Composition-based stats.
 Identities = 130/574 (23%), Positives = 227/574 (40%), Gaps = 55/574 (10%)

Query  1    MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVV-VLVNRVHL  59
              LRSYQ E++  +++  NII  + TG+GKT  A    +  LE     K+V  L   V L
Sbjct  9    FRLRSYQAEMVEESMQS-NIICVMDTGSGKTHIAIDRTRAELEICRPDKIVWFLAPTVTL  67

Query  60   VTQHGEEFRRMLDGRWTVTTLSGD-----MGPRAGFGHLARCHDLLICTAELLQMALTSP  114
              Q    F+  L G + +  LSG         +  +  +     +++ T ++L  AL+  
Sbjct  68   CEQQFAVFKSNLPG-YGIQLLSGKDNLDHWTDQGVWDDVLLNIRIVLSTHQVLLDALS--  124

Query  115  EEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGG  174
                 V++   SL++ DE HH       + IMS + + ++     LP++LGL+ASP    
Sbjct  125  --HGFVKMRNLSLLIFDEAHHCSLKHPAHRIMSDFYKPRI--GTELPRILGLSASPIKTA  180

Query  175  ASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLK  234
                +     + Q+  NL    + +P+    +L  +  +P           QD   ++L 
Sbjct  181  KVTSE----DLQQIERNLCAT-VKTPKLHRSELLRYVHRPHLMRIDYPVEPQDLQSNMLS  235

Query  235  KLMDQI--HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALL  292
             L      +D  + P +S     +     V K      + G    R     L    +A+ 
Sbjct  236  FLKSAYTNYDLQKDPWVSELLQQRQQGHDVTKNIHKVFIGGKTYCRDQLRSLALKAEAMS  295

Query  293  IHDTVRAVD--ALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENP-  349
                +  +D      +  F    H++ +Q+L           +    L  +  +  + P 
Sbjct  296  QELGMSVMDWYLRGCITQFSKMVHMSDSQLLDWSADEKRHLLEILRTLPSIDLNSHDIPP  355

Query  350  --------KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQ  401
                    KL++L K L  +         ++F   R     +   L      + + +R  
Sbjct  356  MSLGSMSHKLQLLIKFLVAEAKHDPEFTCLVFVEQRVWVACIAEVLAIHPETRDL-LRVG  414

Query  402  LLIGAGNSSQSTHM-----TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY  456
              +G   +S+           R+QQ  ++ F+ G LNL++ATSV EEG+D+  C++VV +
Sbjct  415  TFVGESENSKRKANIASISEPRNQQATLENFRAGKLNLILATSVLEEGIDVSSCHLVVCF  474

Query  457  GLLTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQA  516
                N  S VQ RGRAR ++S Y     +  R                +   + Q +++ 
Sbjct  475  ESPKNLKSFVQRRGRARKEESKYVIFVPQAGR---------------RRDPESWQSLEEG  519

Query  517  EYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVE  550
               A + DL+Q  L     Q  Q E   + F V+
Sbjct  520  MKAAYLDDLRQVKLATEKEQ--QSETGHRNFEVK  551


>sp|Q2VF19|DCL1_CRYPA Dicer-like protein 1 OS=Cryphonectria parasitica 
OX=5116 GN=DCL-1 PE=3 SV=1
Length=1548

 Score = 354 bits (908),  Expect = 2e-105, Method: Composition-based stats.
 Identities = 139/570 (24%), Positives = 227/570 (40%), Gaps = 72/570 (13%)

Query  2    ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHL--ETVDGAK------VVVL  53
              R YQ E+   A + +N I  L TG+GKT  AA +    +  E  D AK         L
Sbjct  98   SPRDYQMELFERA-KQQNTIAVLDTGSGKTLIAALLLDHTVNQELEDRAKGLPRRIAFFL  156

Query  54   VNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAG----FGHLARCHDLLICTAELLQM  109
            V +V L  Q        L    +V   SG+          +      H++++CTAE+L  
Sbjct  157  VEKVALAFQQHAVLECNL--AHSVAVFSGESIKNTWTKGFWETQLADHEVIVCTAEILNQ  214

Query  110  ALTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS  169
             L    +  ++ +   +L+V DE HHT K+  Y  I+  Y      R   LP++ G+TAS
Sbjct  215  CL----QYAYIRIDQINLLVFDEAHHTKKNHPYARIIKDYYASGKDRGLRLPRIFGMTAS  270

Query  170  PGTG------GASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHR  223
            P          A +L+G ++  +   A+ D             L+    +P K+    + 
Sbjct  271  PVDALIDVRQAAIELEGLLHSRIATTADPDA------------LRRAVGRPKKEIIYKYN  318

Query  224  RSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALH  283
                P   +L   +  +  + +          Q  +      + A  L      R++ L 
Sbjct  319  PLVKPIQTMLTFKLRPLIANNK----------QFSKAFAFSEAAARELGTWFVDRMWQLF  368

Query  284  LRRYNDALLIHDTVRA--VDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHL  341
            L       L   T R+   D  A      HR  V   + L            R +E    
Sbjct  369  LEDEELLKLEAKTERSLSKDMAAPEVVEKHRNAVRSARELI-----------RSHEFPKP  417

Query  342  ATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQ  401
               G  + KL+ L K+L+  F+ S S R I+F   R +A  L  +  +    +   ++  
Sbjct  418  E-PGLLSSKLKTLSKLLEEYFTDS-SIRCIVFVERRWTAKLLTDFF-ESHAAEIPGLKVG  474

Query  402  LLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN  461
             L+GA     S+  + R+Q   I  F+ G  N + ATSVAEEGLDIP CN+++R+ +   
Sbjct  475  SLMGANAEGGSSQTSFREQIRTILSFKKGNTNCIFATSVAEEGLDIPDCNLIIRFDICKT  534

Query  462  EISMVQARGRARADQSVYAFVATEGSRELKRELI-NEALETLMEQAVAAV--------QK  512
             I  +Q+RGRAR   S Y  +   G+ + +R +  N   E L+ +               
Sbjct  535  MIQYIQSRGRARQADSTYIHLIEGGNGDHRRIMHQNAENEKLLRRFCNTQPEDRLLKGSD  594

Query  513  MDQAEYQAKIRDLQQAALTKRAAQAAQREN  542
             D   +  + R+ +Q  +    A+   + +
Sbjct  595  YDMDFFLRQERNQRQYTIKSTGARLTYKNS  624


>sp|Q2HG76|MPH1_CHAGB ATP-dependent DNA helicase MPH1 OS=Chaetomium 
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 
6347 / NRRL 1970) OX=306901 GN=MPH1 PE=3 SV=1
Length=1134

 Score = 349 bits (894),  Expect = 2e-105, Method: Composition-based stats.
 Identities = 130/671 (19%), Positives = 241/671 (36%), Gaps = 53/671 (8%)

Query  2    ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVT  61
             +R YQ+ ++   L   N ++ LPTG GKT  AA +   +      +K+V +     L +
Sbjct  186  AIRDYQFSIVKNGL-FHNTLVALPTGLGKTFIAATIMLNYFRWTKRSKIVFVAPTKPLAS  244

Query  62   QHGEEFRRM-LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
            Q  +    +    R   T L+G+  P            L   T + L   L+      + 
Sbjct  245  QQVQACLGIAGIPRSQATLLTGET-PPVLRQGEWESKRLFFMTPQTLMNDLSK----GYA  299

Query  121  ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLD-  179
            +     L+VVDE H    D  Y  ++       ++R     ++L LTA+PG+      D 
Sbjct  300  DPKSIVLLVVDEAHRATGDYAYVKVVEF-----IRRFSKSIRILALTATPGSTVEGVQDI  354

Query  180  ----GAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKK  235
                G  +  ++   ++D    +  +N    +   +  P  + +            L+ K
Sbjct  355  IDNLGISHVEIRTEESIDIRQYVHSRN----IDTVTFDPSDEMHEVRGLFSKALKPLVDK  410

Query  236  LMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHD  295
            L  Q   +   P     FG     Q+ +      A  G++   +    + +    L+   
Sbjct  411  LSAQNIYYGRDPMNLTTFGLLKSRQEWLAGPGGHANQGVKFMMMAVFSILQSLAHLIKLL  470

Query  296  TVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLAT-----HGPENPK  350
                +         +      K       +R L   +  +  +A +           +PK
Sbjct  471  NFHGIKPFYNGLAEFRSSEEGKPGQGSKLKRQLLADESFQRMMALIERWMRMEEFNGHPK  530

Query  351  LEMLEKILQRQF---SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG  407
            L  L + L   F     +++ R I+F+  R SA  ++  L  Q       IRA + +G  
Sbjct  531  LTYLCETLVNHFIDAGENSNTRAIVFSEYRDSAEEIVRLLNNQPL-----IRATVFVGQA  585

Query  408  NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
            +S +S  M Q+ Q E I+KF++G  N+LVATS+ EEGLDI   +++V Y    + I M+Q
Sbjct  586  DSKRSEGMKQKQQIETIEKFKNGGFNVLVATSIGEEGLDIGQVDLIVCYDASASPIRMLQ  645

Query  468  ARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQ  527
              GR    ++    +     +E ++ L  +     M+Q +         +      DL  
Sbjct  646  RMGRTGRKRAGNIVLLLMKGKEEEKFLEAKDNYQKMQQLIC------NGDGFTFRHDLST  699

Query  528  AALTKRAAQAAQR-------ENQRQQFPVEHVQLLCINCMVAVGHGSDLRKVEGTHHVNV  580
              + +       +       EN +     E  +              ++     T  VN+
Sbjct  700  RIVPRDIRPEVDKRHVDIPIENSQNTSLPEPKKTAAGLRKKVAKKKFNMPDDVETGFVNL  759

Query  581  NPNF----SNYYNVSRDPVVINKVFKDWKPGGVISCRNCGEVWGLQMIYKSV-KLPVLKV  635
              +F    +        P        +  P   +      +    + +YK++ K P  KV
Sbjct  760  KASFFGQPAERAANIPKPPAETDFLVEVPPLEKVLLSK-SQTERFERLYKTLPKTPFDKV  818

Query  636  RSMLLETPQGR  646
            + +  +     
Sbjct  819  QELGFDDINLG  829


>sp|Q9UT23|MPH1_SCHPO ATP-dependent DNA helicase fml1 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=fml1 
PE=1 SV=2
Length=834

 Score = 342 bits (876),  Expect = 3e-105, Method: Composition-based stats.
 Identities = 128/582 (22%), Positives = 233/582 (40%), Gaps = 65/582 (11%)

Query  1    MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV  60
            +  R YQ+ ++  AL  +N+++ LPTG GKT  AA V   +L     + +V +     LV
Sbjct  71   VSFRDYQFNIVQKAL-FENVLVALPTGLGKTFIAAVVMMNYLRWFPKSYIVFMAPTKPLV  129

Query  61   TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
            TQ  E   ++     + T       P        +  ++   T + +   +    +    
Sbjct  130  TQQMEACYKITGIPKSQTAELSGHVPVTTRNQYYQSRNVFFVTPQTILNDI----KHGIC  185

Query  121  ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG  180
            + T  S +V+DE H +  +  Y  ++       L  +    ++L L+A+PG         
Sbjct  186  DRTRISCLVIDEAHRSTGNYAYVEVV-----HLLSLSNKNFRILALSATPGNK-------  233

Query  181  AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI  240
             +  +  +  +L    I         + ++ Q+          +  D F   L   +  I
Sbjct  234  -LEAIQNVIDSLHISRIEIRTENSIDISQYVQK----------KEVDFFPVDLSAEITDI  282

Query  241  HDHLEM---PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTV  297
             D       P L +      Y  Q  K  +  +   +Q ++ +     +   A    D +
Sbjct  283  RDRFSSILEPMLQKLNKGNYYRIQNAK--DITSFTVVQAKQAFLAMSGQNFPANQKWDIL  340

Query  298  RAVDALA------------ALQDFYHREHVTKTQILCA----ERRLL------ALFDDRK  335
               DALA             ++ FY +    + +        ++R++       L DD +
Sbjct  341  NTFDALATFAYPLNLLLNHGIRPFYQKLREVEEECFVGRSGYKKRIINHENYRPLMDDIE  400

Query  336  NELAHLATHGPENPKLEMLEKILQRQFSSS--NSPRGIIFTRTRQSAHSLLLWLQQQQGL  393
              L   +  G  +PKLE LE+I+   F        R +IF   R SA  +L +L    G 
Sbjct  401  ILLRDQSFVG--HPKLEHLERIVTEYFEKEQTKDTRIMIFVEIRSSAEEILRFL----GK  454

Query  394  QTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV  453
               ++R  + IG     ++  M+Q+ Q E +++FQ G +N L+ATS+ EEGLDI   +++
Sbjct  455  FYPNVRPAIFIGQSAVRKAAGMSQKLQNETVKQFQKGEVNTLIATSIGEEGLDIGEVDMI  514

Query  454  VRYGLLTNEISMVQARGRARADQSVYAFV-ATEGSRELKRELINEALETLMEQAVAAVQK  512
            + Y    + I M+Q  GR    +  Y ++  T G  E K E   +A  TL +  V+  + 
Sbjct  515  ICYDASASPIRMLQRMGRTGRKRKGYIYMLLTRGKEEAKWERAKDAYRTLQDNIVSG-RG  573

Query  513  MDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQL  554
            +  +E   +I   +   +  +      +EN+      + VQL
Sbjct  574  LSLSEKSYRILPEKFRPVCDKRVIEIPKENEEVVVAPKKVQL  615


>sp|A4RN08|MPH1_PYRO7 ATP-dependent DNA helicase MPH1 OS=Pyricularia 
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 
GN=MPH1 PE=3 SV=1
Length=1102

 Score = 346 bits (888),  Expect = 1e-104, Method: Composition-based stats.
 Identities = 130/574 (23%), Positives = 226/574 (39%), Gaps = 57/574 (10%)

Query  2    ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVT  61
             +R YQ+ ++   L   N ++ LPTG GKT  AA V          A++V +     L +
Sbjct  139  PIRDYQFSIVKNGL-FNNTLVALPTGLGKTFIAATVILNFFRWTRNAQMVFVAPTKPLAS  197

Query  62   QHGEEFRRM-LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
            Q  E    +    R   T L+G+  P            L   T + L   L+      + 
Sbjct  198  QQVEACLNIAGIPRSQSTLLTGETKP-VLREAEWEGKRLFFMTPQTLMNDLSK----GYA  252

Query  121  ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLD-  179
            +     L+VVDE H    D  Y  ++       ++R     +VL LTA+PG+      D 
Sbjct  253  DPKRIVLLVVDEAHRATGDYAYVKVIEF-----IRRFSKSFRVLALTATPGSTVEGVQDV  307

Query  180  ----GAINHVLQLCANLDT----------WCIMSPQNCCPQLQEHSQQPCK--QYNLCHR  223
                G  +  ++   ++D             ++ P +   ++ E   Q  K     +  +
Sbjct  308  IDNLGVSHVEIRTEESIDIRNYVHSREIDRVVLEPSDEMLRISELFSQALKPLHSKISQQ  367

Query  224  R---SQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVY  280
            +    +DP       L+    D ++ P    +F  Q  +  ++      A+  + +   +
Sbjct  368  KIYIGRDPMSITTFGLLKARQDWMKGPG---RFANQGLKMMLM------AIFTILQSLAH  418

Query  281  ALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH  340
            A+ L  Y+     +D + A  +    +D   +    K Q L  E+    + D     L  
Sbjct  419  AIKLLNYHGIRPFYDNLVAFRS--ETEDKGQKGSKYKRQ-LIGEQSFQEMMDLASKWLKI  475

Query  341  LATHGPENPKLEMLEKILQRQF---SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD  397
                G  +PKL  L   L   F      +S R I+F+  R SA  +   L   + +    
Sbjct  476  DGFAG--HPKLTHLCDNLLNYFMDAGEGSSTRVIVFSEYRDSAEEITRVLNVHKPM----  529

Query  398  IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG  457
            I A L +G  +S +S  M Q+ Q E I KF+DG  N+LVATS+ EEGLDI   ++++ Y 
Sbjct  530  ISASLFVGQADSKKSEGMKQKQQIETIAKFRDGIFNVLVATSIGEEGLDIGQVDLIICYD  589

Query  458  LLTNEISMVQARGRARADQSV-YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQA  516
              ++ I M+Q  GR    ++     +  +G  E       +  E + +      +   + 
Sbjct  590  ASSSPIRMLQRMGRTGRKRAGKITLLLMKGKEEDNYAKAQDNYEKMQKLICEGSRFNFRH  649

Query  517  EYQAKI--RDLQQAALTKRAAQAAQRENQRQQFP  548
            +  ++I  RD+ +  + KR  +      Q    P
Sbjct  650  DLSSRIVPRDV-KPEVDKRMVEIPIENTQDTSLP  682


>sp|Q7SDF3|MPH1_NEUCR ATP-dependent DNA helicase mph1 OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / 
DSM 1257 / FGSC 987) OX=367110 GN=mph1 PE=3 SV=1
Length=1168

 Score = 342 bits (877),  Expect = 1e-102, Method: Composition-based stats.
 Identities = 113/569 (20%), Positives = 212/569 (37%), Gaps = 39/569 (7%)

Query  2    ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVT  61
             +R YQ+ ++   L   N ++ LPTG GKT  AA +   ++     AK V +     L +
Sbjct  154  PIRDYQFSIVKNGL-FNNTLVALPTGLGKTFIAATIMLNYIRWTKTAKAVFVAPTKPLAS  212

Query  62   QHGEEFRRM-LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
            Q  +    +    R   T L+G+  P            L   T + L   L+      + 
Sbjct  213  QQVQACLSIAGIPRSQATLLTGET-PPVLREDEWATKRLFFMTPQTLMNDLSK----GYA  267

Query  121  ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLD-  179
            +     L+V+DE H    D  Y  ++       L+R     ++L LTA+PG+      D 
Sbjct  268  DPKSIVLLVIDEAHRATGDYAYVKVVEF-----LRRFSKSFRILALTATPGSSLEGVQDV  322

Query  180  ----GAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKK  235
                G  +  ++   ++D    +  ++    +   +  P  +              L+ K
Sbjct  323  IDNLGISHVEIRTEESIDIRQYVHSRD----INTITFDPSDEMMEVRDLFSKALKPLVTK  378

Query  236  LMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHD  295
            L  Q   +   P     +G        +         G +   +    + +     +   
Sbjct  379  LSSQNIYYGRDPMSLTTYGLMKARNDWMAGPGRHVNQGTKFSVIATFAILQSLAHSIKLL  438

Query  296  TVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPE-----NPK  350
                +         +      K       +R +   ++ +  +  +           +PK
Sbjct  439  NFHGIKPFYNNLAEFRTTEEEKGGKGSKLKRQVLEDENFQKMMDMIEGWMKIDGFLGHPK  498

Query  351  LEMLEKILQRQF---SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG  407
            LE L + L   F      ++ R I+F+  R SA  ++  L +Q       I+A + +G  
Sbjct  499  LEYLCETLVNHFMDAGEGSNTRAIVFSEYRDSAEEIVRILNKQPL-----IKATVFVGQA  553

Query  408  NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
            +S +S  M Q+ Q E I+KF++G  N+LVATS+ EEGLDI   +++V Y    + I M+Q
Sbjct  554  DSKRSEGMKQKQQIETIEKFKNGAHNVLVATSIGEEGLDIGQVDLIVCYDASASPIRMLQ  613

Query  468  ARGRARADQSV-YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKI--RD  524
              GR    ++     +  +G  E K     +   T+        +   + +  ++I  RD
Sbjct  614  RMGRTGRKRAGNIVLLLMKGKEEDKFNEAKDNYATMQRMICEGSRFTFRHDLSSRIVPRD  673

Query  525  LQQAALTKRAAQAAQRENQRQQFPVEHVQ  553
            ++     ++       EN +     E  +
Sbjct  674  IRPEV--EKKVVEIPLENSQNPELPEPKR  700


>sp|Q6BRF0|MPH1_DEBHA ATP-dependent DNA helicase MPH1 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / 
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=MPH1 PE=3 SV=2
Length=1105

 Score = 336 bits (862),  Expect = 5e-101, Method: Composition-based stats.
 Identities = 114/573 (20%), Positives = 208/573 (36%), Gaps = 91/573 (16%)

Query  1    MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV  60
             E+R YQ+ ++  A    N+++ LPTG GKT  A+ V           K++ +     LV
Sbjct  85   FEVRDYQFNIVQRAFYD-NLLVALPTGLGKTFIASTVMLNFTRWFPRGKIIFMAPTKPLV  143

Query  61   TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
             Q  +    +     +   +  D   R     +     +   T ++++  LT+      +
Sbjct  144  AQQIKACCGITGIPTSEVAILLDKS-RRNRADIWDSKTVFFTTPQVVENDLTA----GII  198

Query  121  ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG  180
            +     L+V+DE H +  +  YN ++       + R     ++L LTA+P +        
Sbjct  199  DPKEVVLLVIDEAHKSKGNYAYNNVVKF-----ITRFNISFRILALTATPAS--------  245

Query  181  AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI  240
             +  V ++  NL    +         + ++ +Q  K+             +L+  L   I
Sbjct  246  DVEGVQEIIDNLSISKVEVRTEQSIDITKYMKQ--KKIERVTVSPSVEICELVDMLCTAI  303

Query  241  HDHLEMPELSRKF---------GTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDAL  291
               L M    R +           Q+ +     L       GL+ Q  + L +       
Sbjct  304  QPVLSMANERRIYDMSDPSKINAFQVIDASQRLLKNPTIPEGLKWQNYFILQILNVVGQA  363

Query  292  LIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALF----------DDRKNELAHL  341
            L    +  + +     D  H+E   K +   +  +  A F          D  K  +A  
Sbjct  364  LRRLNIYGIKSFYNYFDQKHKEFTIKFKNKKSNNQTAARFYFHDNIKLILDKCKELIADD  423

Query  342  ATHGPENPKLEMLEKILQRQFSSS--NSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIR  399
               G  +PKLE+L   L   F  +  N  R IIFT  R+SA  ++  +++       ++R
Sbjct  424  NFLG--HPKLEILINELDEFFKENEANDSRVIIFTEFRESALDIVSSIERIGS----NLR  477

Query  400  AQLLIGAGNS-------------------------------------------SQSTHMT  416
              + IG                                               +Q   M 
Sbjct  478  PHIFIGQSKEKEKFDEEAYLSKGKKGRTKGKATKGKQNSETPERSTSRTSSEDAQIKGMN  537

Query  417  QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQ  476
            Q+ Q+++I+KF+ G  N+LVATS+ EEGLDI   +++V Y   ++ I  +Q  GR    +
Sbjct  538  QKLQKDLIKKFKKGEYNILVATSIGEEGLDIGEVDLIVCYDSTSSPIKNIQRMGRTGRKR  597

Query  477  SVYAFVATEGSRELKRELINEALETLMEQAVAA  509
                 +   G+ E K +      E + +  +  
Sbjct  598  DGKVLLLFAGNEESKFDKAMAGYEFIQQHIMNG  630


>sp|A4RKC3|DCL1_PYRO7 Dicer-like protein 1 OS=Pyricularia oryzae 
(strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 GN=DCL1 
PE=3 SV=2
Length=1591

 Score = 342 bits (876),  Expect = 6e-101, Method: Composition-based stats.
 Identities = 143/553 (26%), Positives = 238/553 (43%), Gaps = 61/553 (11%)

Query  3    LRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK--------VVVLV  54
             R YQ E+   A + KN I  L TG GKT  A  + +  +E   GA+           LV
Sbjct  108  PREYQIELFERA-KQKNTIAVLDTGTGKTLIAILLIRHIIELELGARWQGREKRITFFLV  166

Query  55   NRVHLVTQHGEEFRRMLDGRWTVTTLSGD-----MGPRAGFGHLARCHDLLICTAELLQM  109
            ++V LV Q  +  R  LD  + VT L GD        +  F  L +  ++++CTAE+L  
Sbjct  167  DKVALVRQQTDHIRANLD--FPVTGLHGDTVRNLWYSKEYFEKLLQEQEVVVCTAEILYR  224

Query  110  ALTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS  169
             L       ++ ++  SL+V DE HH  K+ VY  I+  +  L  +  Q  P++ G+TAS
Sbjct  225  CL----HRSYLNISQVSLVVFDEAHHAKKNHVYARIIKDFY-LMEEDCQKRPRIFGMTAS  279

Query  170  PGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHS-QQPCKQYNLCHRRSQDP  228
            P        D  I++                      L +    +P +         +  
Sbjct  280  PIDTK----DTCISYERATHELESLLHSEIATISDRDLLKVIGSRPQE--------VRKS  327

Query  229  FGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN  288
            +  +L++   ++ + L     +     Q ++     ++E   L      +++ L  R   
Sbjct  328  YARVLRQENTELCNQLRELVGNHPLFKQTFDSAEFAVTE---LGAWCADKLWELCFREEA  384

Query  289  DALL--IHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGP  346
             + L    +  RA D    + +  H     +  +   ++   +  +D           G 
Sbjct  385  VSTLDGRVEGSRARDP-DEVGESSHEVSNAREALSLVQQWSFSPPED-----------GS  432

Query  347  ENPKLEMLEKILQRQFSSS---NSPRGIIFTRTRQSAHSLLLWLQQQQGLQT--VDIRAQ  401
             + K   L +IL   FS +   N+ + I+F + R +A  LL  L +Q  ++T   D++  
Sbjct  433  LSTKTHKLIEILAECFSQASAGNAIQCIVFVKRRDTA-VLLNALCEQAEIRTKIPDLKGA  491

Query  402  LLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN  461
             LIGAG    +   T R Q++ + +F+DG +N L ATS+AEEGLDIP CNVV+R+ L   
Sbjct  492  FLIGAGRGGNAAFTTTRQQEQTVSRFRDGEINCLFATSIAEEGLDIPGCNVVIRFDLHGT  551

Query  462  EISMVQARGRARADQSVYAFVATEGSRELKRELINE-ALETLMEQAVAAVQK---MDQAE  517
             I  +Q+RGRAR   S +  +   G+ E  R    +   E  M     ++ K   M++AE
Sbjct  552  TIQYIQSRGRARMRNSWFIHMTEFGNPEHNRRWFQDRVNEQKMRDFCLSLPKDRIMEKAE  611

Query  518  YQAKIRDLQQAAL  530
                +R  Q   +
Sbjct  612  VDDVLRGDQSQKI  624


>sp|Q1DY43|MPH1_COCIM ATP-dependent DNA helicase MPH1 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=MPH1 PE=3 SV=1
Length=1110

 Score = 335 bits (859),  Expect = 1e-100, Method: Composition-based stats.
 Identities = 128/580 (22%), Positives = 221/580 (38%), Gaps = 59/580 (10%)

Query  4    RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQH  63
            R YQ+ +   AL   N+++ LPTG GKT  AA V          A++V +     LV+Q 
Sbjct  325  REYQFNIAHRAL-FHNLLVALPTGLGKTFIAATVMLNWFHWTKDAQIVFVAPTKPLVSQQ  383

Query  64   GEE-FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
             +  F      R   T L+G+  P        R   +   T + +   L    +    + 
Sbjct  384  VDACFHIAGIPRSQTTLLTGNT-PPGVRAEEWRSKRVFFMTPQTIMNDL----KTGIADP  438

Query  123  TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLD---  179
                L+VVDE H       Y  I+       LQR     +VL LTA+PG    +  +   
Sbjct  439  KRIVLLVVDEAHRATGAYAYVEIVKF-----LQRFNNSFRVLALTATPGATVEAVQEVID  493

Query  180  --GAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLM  237
                    ++   +LD    +  +N      E+S+       L  +  Q     ++ +L 
Sbjct  494  GLSISRIEIRTEKSLDIRGFVHQRNVETITFENSRDMITSMELFAKALQP----VVDRLR  549

Query  238  DQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTV  297
            +Q       P     FG     Q+    S A   A    +              ++    
Sbjct  550  NQNAYWGRDPMALTPFGLTKARQEWNS-SPAGRAASWPVKGTINSMFT------VLASLA  602

Query  298  RAVDALAA--LQDFY-----HREHVTKTQILCAERRLLALFDDRKNELAHL-ATHGPE--  347
             A+D L    +  FY       + V K +        +    + K  ++ L +    E  
Sbjct  603  HAIDLLKYHGIGPFYRNLVSFEDSVLKEKKGGKCASQIVADGNFKVLMSKLRSWTNTEEF  662

Query  348  --NPKLEMLEKILQRQF------------SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGL  393
              +PKLE L + +   F             S ++ R +IF+  R SA  ++  L++ Q  
Sbjct  663  IGHPKLEYLRRAILNHFLDAGGKNGGDSEGSDSNTRVMIFSHFRDSAEEIVRVLRKHQPF  722

Query  394  QTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV  453
                +R  + +G  N+  S  M Q+ Q EV+ KF+ GT N +VATS+ EEGLDI   +++
Sbjct  723  ----VRPHVFVGQANAKGSEGMDQKTQLEVVGKFKTGTYNTIVATSIGEEGLDIGEVDLI  778

Query  454  VRYGLLTNEISMVQARGRARADQSV-YAFVATEGSRELKRELINEALETLMEQAVAAVQK  512
            + Y   ++ I M+Q  GR    ++     + ++G  E       ++ E + +   +  + 
Sbjct  779  ICYDGHSSPIRMLQRMGRTGRKRAGNIILLLSKGKEEESYSKAKDSYEKMQQLIASGSRF  838

Query  513  MDQAEYQAKI--RDLQQAALTKRAAQAAQRENQRQQFPVE  550
                +  ++I  +D+Q  A  K      +        P +
Sbjct  839  TFHTDKSSRIVPQDIQPEAEEKMIEIPIENSQLGLPEPAK  878


>sp|A6RIS1|MPH1_BOTFB ATP-dependent DNA helicase MPH1 OS=Botryotinia 
fuckeliana (strain B05.10) OX=332648 GN=mph1 PE=3 SV=2
Length=1229

 Score = 335 bits (858),  Expect = 1e-99, Method: Composition-based stats.
 Identities = 117/578 (20%), Positives = 218/578 (38%), Gaps = 61/578 (11%)

Query  4    RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQH  63
            R YQ+ ++   L   N+++ LPTG GKT  AA +          +++V +     LV+Q 
Sbjct  272  RRYQYTIVHKGL-FNNLLVALPTGLGKTFIAATIMLNFFRWTKNSQIVFMAPTKPLVSQQ  330

Query  64   GEE-FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
             +  F      R + T L+GD  P A          +   T + ++  L    +    + 
Sbjct  331  VKACFEIAGIPRSSTTMLTGDQTP-ALRAEEWDEKRVFFMTPQTVENDL----KTGIADP  385

Query  123  TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAI  182
               +L+VVDE H       Y  ++       L+R     +VL LTA+PG+         +
Sbjct  386  KRIALLVVDEAHRATGKYAYTKVVEF-----LRRFNKSFRVLALTATPGST--------V  432

Query  183  NHVLQLCANLDTWCIMSPQNCCPQLQEHSQQ---------PCKQYNLCHRRSQDPFGDLL  233
              V ++  NL+   +         ++E+  +         P  +  +           L+
Sbjct  433  EAVQEVIDNLEIAEVEIRTEESIDIKEYVHRRDITEILIDPSDEIIMVRDLFSKALQPLV  492

Query  234  KKLMDQIHDHLEMPELSRKFGTQMYEQ-QVVKLSEAAALAGLQEQRVYALHLRRYNDALL  292
              L  Q   + + P    +FG     +  +   +  +A  G++        +       +
Sbjct  493  NLLCSQKAYYNKDPMSLTQFGMLTARKTWMASGAGKSANMGVKGMMNALFTVLTSMGHAI  552

Query  293  IHDTVRAVDA-LAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHL-ATHGPE---  347
                   +    + ++DF  R  V   +     +  +    D K  +  + +    E   
Sbjct  553  KILNFHGIGPFFSNIKDF--RAEVEGNKKGGKYKNQVVNDPDFKKMMDRIQSWINKEEFI  610

Query  348  -NPKLEMLEKILQRQFSSS-----------NSPRGIIFTRTRQSAHSLLLWLQQQQGLQT  395
             +PKL  L   +   F  +           +S R I+FT  R SA  +   L +   +  
Sbjct  611  GHPKLTHLCDTVLNHFLDAGAGLTGDNMPPSSTRVIVFTEYRDSAEDIARVLNKHGPM--  668

Query  396  VDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVR  455
              I+A + +G  +S +S  M Q  Q E I+KF+ G +N++VATS+ EEGLDI   +++V 
Sbjct  669  --IKASVFVGQSDSKRSEGMNQEKQLETIRKFKAGGINVIVATSIGEEGLDIGEVDLIVC  726

Query  456  YGLLTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQ  515
            Y   ++ I M+Q  GR    ++    +       L R    ++ +   +      + +  
Sbjct  727  YDSSSSPIRMLQRMGRTGRKRAGKIVLL------LMRGKEEDSYKKSKDNYEQMQRMISS  780

Query  516  AEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQ  553
                    DL    + +        E +  + P E+ Q
Sbjct  781  GSRFTFRHDLSARIIPRDVKPEV--EKRFIEIPPENTQ  816


>sp|Q8BGE5|FANCM_MOUSE Fanconi anemia group M protein homolog 
OS=Mus musculus OX=10090 GN=Fancm PE=1 SV=3
Length=2021

 Score = 339 bits (868),  Expect = 1e-99, Method: Composition-based stats.
 Identities = 119/560 (21%), Positives = 215/560 (38%), Gaps = 82/560 (15%)

Query  2    ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVT  61
             +R YQ ++   AL   N ++ LPTG GKT  AA V           KVV +     LVT
Sbjct  78   PVRDYQLDISRSAL-FCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVVFMAPTKPLVT  136

Query  62   QHGEE-FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
            Q  E  F  M   +  +  ++G          +     +L  T +++   LT       V
Sbjct  137  QQMEACFHVMGIPQSHMAEMTGSTQA-VNRKEIWSSRRVLFLTPQVMVNDLT----RGAV  191

Query  121  ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG  180
              T    +VVDE H    +  Y  ++ + ++          ++L L+A+PG+        
Sbjct  192  PATHVKCLVVDEAHKALGNYAYCQVVRELVKYTTH-----FRILALSATPGS--------  238

Query  181  AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI  240
             I  V Q+  NL    I       P +  +S +   +      +   P G+ L  +    
Sbjct  239  DIKAVQQVITNLLIGKIELRSEESPDILPYSHERRVE------KLVVPLGEELGAIQKTY  292

Query  241  HDHLEMP---------------ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRV---YAL  282
               LE                     K+   +   Q  K + +  + G+Q+  +   +AL
Sbjct  293  IQILETFASSLIHRNVLMKRDIPNLTKYQIILARDQFRK-NPSPNIVGIQQGIIEGEFAL  351

Query  283  HLRRYNDALLIHD-------------------TVRAVDALAALQDFYHREHVTKTQILCA  323
             +  Y+   L+                       RA + L+  +DF       ++    A
Sbjct  352  CISLYHGYELLQQMGMRSLYFFLSGIMDGTKGMTRARNELSRNEDFMKLYTHLQSAFAPA  411

Query  324  ERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSN----------SPRGIIF  373
                 + F     E   + +H    PKL+ LE+++   F S N            R +IF
Sbjct  412  STSDASAFQRGNKEKKFVYSH----PKLKKLEEVILEHFKSWNAKATTEKKCHESRVMIF  467

Query  374  TRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN  433
            +  R S   +   L Q + +    IR    +G  +   +   TQ++Q +V+++F+DG  N
Sbjct  468  SSFRDSVEEIAEMLLQHRPV----IRVMTFVGHASGKNTKGFTQKEQLQVVRQFRDGGYN  523

Query  434  LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFVATEGSRELKRE  493
             LV+T V EEGLDI   ++++ +    + I ++Q  GR    +     V     RE +  
Sbjct  524  TLVSTCVGEEGLDIGEVDLIICFDAQKSPIRLIQRMGRTGRKRQGRIVVILAEGREERTY  583

Query  494  LINEALETLMEQAVAAVQKM  513
              +++ +  + +A++  +++
Sbjct  584  NQSQSNKKNIYKAISGNRQV  603


>sp|Q9SP32|DCL1_ARATH Endoribonuclease Dicer homolog 1 OS=Arabidopsis 
thaliana OX=3702 GN=DCL1 PE=1 SV=2
Length=1909

 Score = 337 bits (865),  Expect = 3e-99, Method: Composition-based stats.
 Identities = 141/576 (24%), Positives = 227/576 (39%), Gaps = 88/576 (15%)

Query  2    ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAK----RHLETVDGAKVVVLVNRV  57
            + R YQ +V+  A + KN I +L TGAGKT  A  + K      +        V LV +V
Sbjct  248  QARRYQLDVLEQA-KAKNTIAFLETGAGKTLIAILLIKSVHKDLMSQNRKMLSVFLVPKV  306

Query  58   HLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAG----FGHLARCHDLLICTAELLQMALTS  113
             LV Q  E  R      + V    G+MG        +        +L+ TA++L   L  
Sbjct  307  PLVYQQAEVIRNQT--CFQVGHYCGEMGQDFWDSRRWQREFESKQVLVMTAQILLNIL--  362

Query  114  PEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGT-  172
                  + +    L+++DECHH  K   Y+++MS++     +     P + G+TASP   
Sbjct  363  --RHSIIRMETIDLLILDECHHAVKKHPYSLVMSEFYHTTPK--DKRPAIFGMTASPVNL  418

Query  173  -GGASKLDGAINHVLQLCANLD-TWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFG  230
             G +S++D AI  +  L   LD T C +  +    +L++H   P +     + ++   + 
Sbjct  419  KGVSSQVDCAIK-IRNLETKLDSTVCTIKDRK---ELEKHVPMPSEIVV-EYDKAATMWS  473

Query  231  --DLLKKLMDQIHDHLEMPELSRKF--------GTQMYEQQVVKLSEA------------  268
              + +K+++  + +  +      K+        G +   +QV  +SE             
Sbjct  474  LHETIKQMIAAVEEAAQASSRKSKWQFMGARDAGAKDELRQVYGVSERTESDGAANLIHK  533

Query  269  --------AALAGLQEQRVYALHLRRY---------NDALLIHDTVRAVDALAALQDFYH  311
                    A L      +V    L             D       +  V +L   +    
Sbjct  534  LRAINYTLAELGQWCAYKVGQSFLSALQSDERVNFQVDVKFQESYLSEVVSLLQCELLEG  593

Query  312  REHVTKTQILCAERRLLALFDDRKNELAHLAT----------------HGPENPKLEMLE  355
                     +       A  +  + EL                      G   PK++ L 
Sbjct  594  AAAEKVAAEVGKPENGNAHDEMEEGELPDDPVVSGGEHVDEVIGAAVADGKVTPKVQSLI  653

Query  356  KILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHM  415
            K+L + +  +   R I+F     +A  L     +   L    IR   +IG  N   S  M
Sbjct  654  KLLLK-YQHTADFRAIVFVERVVAALVLPKVFAELPSLSF--IRCASMIGHNN---SQEM  707

Query  416  TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARAD  475
                 Q+ I KF+DG + LLVATSVAEEGLDI  CNVV+R+ L    ++ +Q+RGRAR  
Sbjct  708  KSSQMQDTISKFRDGHVTLLVATSVAEEGLDIRQCNVVMRFDLAKTVLAYIQSRGRARKP  767

Query  476  QSVYAFVATEGSRELKRELIN--EALETLMEQAVAA  509
             S Y  +   G+      L N   + ETL ++A+  
Sbjct  768  GSDYILMVERGNVSHAAFLRNARNSEETLRKEAIER  803


>sp|A7LFZ6|DCL4_ORYSJ Endoribonuclease Dicer homolog 4 OS=Oryza 
sativa subsp. japonica OX=39947 GN=DCL4 PE=2 SV=1
Length=1657

 Score = 337 bits (863),  Expect = 4e-99, Method: Composition-based stats.
 Identities = 125/563 (22%), Positives = 215/563 (38%), Gaps = 78/563 (14%)

Query  4    RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKR--HLETVDGAKV-VVLVNRVHLV  60
            R YQ ++   A+E +NII++L TG GKT  A  +     HL      +V + L   + LV
Sbjct  31   RKYQLDLCKRAVE-ENIIVYLGTGCGKTHIAVLLIYELGHLIRKPSREVCIFLAPTIPLV  89

Query  61   TQHGEEFRRMLDGRWTVTTLSGDMG-PRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
             Q         D +      +G        + +  R  ++L+ T ++L  +L        
Sbjct  90   RQQAVVIASSTDFKVQCYYGNGKNSRDHQEWENDMREFEVLVMTPQILLQSL----RHCF  145

Query  120  VELTVFSLIVVDECHHTH--KDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGA--  175
            +++   +L+++DECHH    K   Y  IM ++        +  P+V G+TASP  G    
Sbjct  146  IKMNSIALLILDECHHAQPQKRHPYAQIMKEFYNSN--SVEKFPRVFGMTASPIIGKGVM  203

Query  176  -------------------------SKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEH  210
                                     S        +  L   L             +L+  
Sbjct  204  PSHSFTEKGGRSPCQPLIFFLPKGGSNKLNYTKCINSLEELLHAKVCSVDNE---ELESV  260

Query  211  SQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDH-----------LEMPELSRKFGTQMYE  259
               P  +       +      +  K +D +               +  +   K   +++E
Sbjct  261  VASPDMEVYFYGPVNHSNLTTICIKELDSLKLQSERMLRASLCDFKDSQKKLKSLWRLHE  320

Query  260  QQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQ  319
              +  L E  +   LQ  R +        D        R VD   +   F H      T 
Sbjct  321  NIIFCLQELGSFGALQAARTFLSFDGDKLD-------RREVDLNGSTSSFAHHYLNGATS  373

Query  320  ILCAER---RLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRT  376
            IL   +        FD  K E    +       K  +L  +L R +    + + I+F + 
Sbjct  374  ILSRNKTDGSHAGSFDLEKLEEPFFSN------KFSVLINVLSR-YGLQENMKCIVFVKR  426

Query  377  RQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLV  436
               A ++   LQ  + L+    + + L+G    S S +M++     ++Q+F  G +NLLV
Sbjct  427  ITVARAISNILQNLKCLEF--WKCEFLVGC--HSGSKNMSRNKMDAIVQRFSSGEVNLLV  482

Query  437  ATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFVATEGSRELKRELIN  496
            ATSV EEGLDI  C +VVR+ L     S +Q+RGRAR  +S Y  +    ++  ++ L+N
Sbjct  483  ATSVGEEGLDIQTCCLVVRFDLPETVASFIQSRGRARMTKSKYVVLLERENQSHEK-LLN  541

Query  497  EAL--ETLMEQAVAAVQKMDQAE  517
              +  E++M + + +    D  +
Sbjct  542  GYIAGESIMNEEIDSRTSNDMFD  564


>sp|Q5A1A0|MPH1_CANAL ATP-dependent DNA helicase MPH1 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=MPH1 
PE=3 SV=2
Length=1187

 Score = 332 bits (850),  Expect = 7e-99, Method: Composition-based stats.
 Identities = 112/561 (20%), Positives = 215/561 (38%), Gaps = 77/561 (14%)

Query  1    MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV  60
             E+R YQ+ ++  A    N+++ LPTG GKT  A+ V    L     +K++ +     LV
Sbjct  135  FEIRDYQYNIVERAFYD-NLLVALPTGLGKTFIASTVMLNFLRWFPISKIIFMAPTRPLV  193

Query  61   TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
             Q  +    +     +   +  D   R     +     +   T ++++  L S      V
Sbjct  194  AQQIKACCSIAGIPSSKVAILLDKT-RRNRAEIWNSRQVFFTTPQVVENDLAS----GVV  248

Query  121  ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG  180
                 +L+V+DE H    +  YN ++       + R     ++L LTA+P +        
Sbjct  249  NPKSIALLVIDEAHRAKGNYSYNNVVKF-----INRFSDSYRILALTATPAS--------  295

Query  181  AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQ-----DPFGDLLKK  235
             +  V Q+  NL+   +         +  H ++   +   C+  S+     +   + +  
Sbjct  296  DVEGVQQIIDNLNISKVEVRTEQSIDIVRHMKRKTVERKTCYPSSEITECIELLAEGITP  355

Query  236  LMDQIH--DHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLI  293
            +++       L++ + +R    Q  E     ++      GL+    + L L         
Sbjct  356  VLNTAKERGLLDLTDPTRINFLQCMEISRKIVANPTIPEGLKWSNYFILQLLGMVGQCYR  415

Query  294  HDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALF---------DDRKNELAHLATH  344
               +  + +  +  +    E  TK     +  +L A F          DR  EL+   T+
Sbjct  416  RLNIYGIRSFQSYFNEKFLEFKTKWNAKKSTNKLNADFYFSDPITTLMDRVEELSKTLTY  475

Query  345  GPENPKLEMLEKILQRQF--SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL  402
            G  +PK+E L + L   F    +   R IIFT  R+SA  ++  +++       + +  +
Sbjct  476  G--HPKIEALMEELDDFFKNHETAGSRVIIFTEFRESALEIVQCIEK----ANDNRKPHI  529

Query  403  LIGAG----------------------------------NSSQSTHMTQRDQQEVIQKFQ  428
             IG                                     ++Q T M+Q+ Q+E+I+KF+
Sbjct  530  FIGQSKEKEKFDVENFGKKKQKGQTKKKKDERPSTRSSSENAQMTGMSQKLQKEIIKKFK  589

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFVATEGSR  488
             G  N+LVATS+ EEGLDI   ++++ Y   ++ I  +Q  GR    +     +    + 
Sbjct  590  KGVFNILVATSIGEEGLDIGEVDLIICYDSTSSPIKNIQRMGRTGRKRDGKVLMLFSSNE  649

Query  489  ELKRELINEALETLMEQAVAA  509
            E K +      E + +  +  
Sbjct  650  ESKFDKAMGGYEYIQQHIMKG  670


>sp|A7EFH4|MPH1_SCLS1 ATP-dependent DNA helicase mph1 OS=Sclerotinia 
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 
GN=mph1 PE=3 SV=1
Length=1235

 Score = 331 bits (849),  Expect = 2e-98, Method: Composition-based stats.
 Identities = 115/578 (20%), Positives = 219/578 (38%), Gaps = 61/578 (11%)

Query  4    RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQH  63
            R YQ+ ++   L   N+++ LPTG GKT  AA +          +++V +     LV+Q 
Sbjct  266  RRYQYTIVHKGL-FNNLLVALPTGLGKTFIAATIMLNFFRWTTDSQIVFMAPTKPLVSQQ  324

Query  64   GEE-FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
             +  F      R + T L+GD  P A          +   T + ++  L    +    + 
Sbjct  325  VKACFEIAGIPRSSTTMLTGDQSP-ALRAEEWAEKRVFFMTPQTVENDL----KTGIADP  379

Query  123  TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAI  182
               +LIVVDE H    +  Y  ++       L+R     +VL LTA+PG+         +
Sbjct  380  KKIALIVVDEAHRATGNYAYTKVVQF-----LRRFNESFRVLALTATPGSS--------V  426

Query  183  NHVLQLCANLDTWCIMSPQNCCPQLQEHSQQ---------PCKQYNLCHRRSQDPFGDLL  233
              V ++  NL+   +         ++E+  +         P  +  +           L+
Sbjct  427  EAVQEVIDNLEIAEVEIRTEDSIDIKEYVHRRDITEILIDPSDEIIMIRELFSKALQPLV  486

Query  234  KKLMDQIHDHLEMPELSRKFG-TQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALL  292
              L  Q   + + P    ++G     +  +   +  +A   ++        +       +
Sbjct  487  NLLCSQKAYYNKDPMGLTQYGMLTARKAWMASGAGKSAQMSIKGMMNALFTVLTSMGHAI  546

Query  293  IHDTVRAVDA-LAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLA-THGPE---  347
                   +    + ++DF  R  V   +     +  +    + K  +  +      E   
Sbjct  547  KLLNFHGIGPFFSNIKDF--RAEVEGNKKGGKYKNQIVNSPEFKKMMERIQGWINKEDFI  604

Query  348  -NPKLEMLEKILQRQFSSS-----------NSPRGIIFTRTRQSAHSLLLWLQQQQGLQT  395
             +PKL  L   +   F  +           +S R I+FT  R SA  +   L +   +  
Sbjct  605  GHPKLTYLCDTVLNHFLDAGAGLMGDNMPPSSTRVIVFTEYRDSAEDIARVLNKHGPM--  662

Query  396  VDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVR  455
              IRA + +G  +S +S  M Q  Q E I+KF+ G +N++VATS+ EEGLDI   +++V 
Sbjct  663  --IRASVFVGQSDSKRSEGMNQEKQLETIRKFKAGGINVIVATSIGEEGLDIGEVDLIVC  720

Query  456  YGLLTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQ  515
            Y   ++ I M+Q  GR    ++    +       L R    ++ +   +      + +  
Sbjct  721  YDSSSSPIRMLQRMGRTGRKRAGKIVLL------LMRGKEEDSYKKSKDNYEQIQRMISS  774

Query  516  AEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQ  553
                    DL    + ++       + +  + P+E+ Q
Sbjct  775  GSRFTFRHDLSARIIPRKVKPEV--DKRFIEIPLENTQ  810


>sp|Q7SCC1|DCL2_NEUCR Dicer-like protein 2 OS=Neurospora crassa 
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / 
FGSC 987) OX=367110 GN=dcl-2 PE=2 SV=4
Length=1534

 Score = 334 bits (856),  Expect = 2e-98, Method: Composition-based stats.
 Identities = 132/526 (25%), Positives = 211/526 (40%), Gaps = 58/526 (11%)

Query  1    MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV  60
            +  R+YQ E+   +L+ +NII+ L +          VA  H +  D  ++  L   V L 
Sbjct  69   LTARAYQLEMFEASLK-QNIIVALFSDR------VMVADGHWQWQDSGRIWFLTPTVALA  121

Query  61   TQHGEEFRRMLDGRWTVTTLSGD-----MGPRAGFGHLARCHDLLICTAELLQMALTSPE  115
             Q     +  +        L G         +A +  +     +++ T ++L  A     
Sbjct  122  RQQHRVLQSQIP-SVKAIMLCGQDGVDSWSEQAVWDAVLLNVRIVVSTYQILFDA----N  176

Query  116  EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGA  175
                V L   SLIV+DE H+         +M++      +   P+P +LGLTASP     
Sbjct  177  AHSFVRLDSLSLIVIDEAHNCSGSHPIARLMTEAYLPAKKAGLPVPSILGLTASPLKSNN  236

Query  176  SKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPF-GDLLK  234
                  +  + +L   LD  C  +P     +L  H  +P            DP   DL+ 
Sbjct  237  ------LADIEKLEQVLDAVC-RTPTIHREELLAHVNRPEMLVVSYGDSGTDPTPTDLMT  289

Query  235  KLMDQIH--DHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR-YNDAL  291
            + ++  H  D  + P++      Q  E+   KL +         Q+     LR  YN AL
Sbjct  290  RFLEAYHRLDISKDPDVLL-LKAQRTERAREKLRQMITKKDTLAQK----ELRGVYNRAL  344

Query  292  LIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGP-----  346
            L+    R +   AA  D+Y    V+   +L    R       R    A  +   P     
Sbjct  345  LVR---REIGPWAA--DYYLTRTVS--HMLAELERGEPPAQHRYIGEALRSIPIPAISKE  397

Query  347  ---ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLL  403
                +PK++ L K+L         P GI+F + R    S++  +     L     R   +
Sbjct  398  PIQLSPKVQTLLKVLASH---QQDPVGIVFVKERVMV-SIVTHIISTHPLTKDRYRTASM  453

Query  404  IGA----GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL  459
            IG     G +     MT+++    ++ F+ G  NLLVATSV EEG+D+P CN+V+ +   
Sbjct  454  IGTASVPGKARNHMDMTKKEDMTSLEGFRLGRFNLLVATSVLEEGIDVPICNLVICFDEP  513

Query  460  TNEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQ  505
            +N  S +Q RGRAR   S    +    S E   +  N  LE LM++
Sbjct  514  SNIKSFIQRRGRAREVSSTLYLMVQNASSESATDWHN--LERLMKE  557


>sp|Q1DW80|DCL2_COCIM Dicer-like protein 2 OS=Coccidioides immitis 
(strain RS) OX=246410 GN=DCL2 PE=3 SV=3
Length=1435

 Score = 332 bits (852),  Expect = 4e-98, Method: Composition-based stats.
 Identities = 127/548 (23%), Positives = 223/548 (41%), Gaps = 47/548 (9%)

Query  2    ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK-VVVLVNRVHLV  60
              R YQ E++  +L  +NII+ + TG+GKT  A    +R LE     K V  +   V LV
Sbjct  46   RARGYQLEMLSESLR-QNIIVAMDTGSGKTEIAILRIQRELERCPAHKFVWFMAPTVALV  104

Query  61   TQHGEEFRRMLDGRWTVTTLSGD-----MGPRAGFGHLARCHDLLICTAELLQMALTSPE  115
             Q      + L   +    L+G         +  +  +     ++I T ++L  AL++  
Sbjct  105  EQQHSAISKQLPA-FQTRLLTGAANVSHWSTKKIWDDILLNIRIVISTPQVLLDALSN--  161

Query  116  EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQR--AQPLPQVLGLTASPGTG  173
                V+L   SL+V DE HH  +D   N IM  +     Q      LP +LGLTASP T 
Sbjct  162  --GFVDLHTISLLVFDEAHHCVRDAPANRIMRDFYHYHRQEEGTDGLPHILGLTASPTTR  219

Query  174  GASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLL  233
                       +  L  NL+  C+ +P+    ++ +    P +  ++ ++     F  ++
Sbjct  220  ARQT------DLEVLEINLNAVCV-TPKMHREEMMQFVHMP-EYRSIEYQPDVQNFSSIV  271

Query  234  KKLMDQIH--DHLEMPELS--RKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND  289
            +KL   I+  D    P +   R+       Q+++   E      L + +      R  + 
Sbjct  272  EKLSVIINELDIENDPFVKFMRRRNDLKSRQRLLDALENKKTPCLDQLKRCLRRSRVIHR  331

Query  290  ALLIHDTVRAVDALAALQDFYHREHV-TKTQILCAERRLLALFDDRKNELAHLATHGPEN  348
             L    + R       +     ++   +  Q    +R   +   +  +++      G +N
Sbjct  332  ELGPWASERF--LTRCIMGLKSKQTNASGPQWADWDREDNSYMLNVLSQVVSSTEMGVQN  389

Query  349  P------KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL  402
            P      K+  L   L       N   GI+F   R     L   L      +T  I+   
Sbjct  390  PPDELSRKVHKLIDFLV--LEHVNGSIGIVFAEERTIVIMLAQLLSLHP--RTKHIKTTA  445

Query  403  LIGAGNS-SQSTHMTQ----RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG  457
             +G+  S S+ + +T+     DQ   I   + G  +L++AT+V EEG+D+P C++V+ + 
Sbjct  446  FLGSSASVSRKSDITELHNPIDQSTAIDDLRTGKKDLIIATAVLEEGIDVPICDLVICFD  505

Query  458  LLTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQ-AVAAVQKMDQA  516
            L  +  S +Q RGRAR   S +A       R    EL    +E  M+Q  +   + ++  
Sbjct  506  LPKDLRSFIQRRGRARKKGSKFALFLHSEDRATSSEL--HLMEKTMKQLYLENKRALEHI  563

Query  517  EYQAKIRD  524
            +Y   + +
Sbjct  564  QYLENVEE  571


>sp|A3GH78|MPH1_PICST ATP-dependent DNA helicase MPH1 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=MPH1 PE=3 SV=3
Length=1050

 Score = 327 bits (837),  Expect = 8e-98, Method: Composition-based stats.
 Identities = 117/584 (20%), Positives = 226/584 (39%), Gaps = 77/584 (13%)

Query  1    MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV  60
             E+R YQ+ ++  A    N+++ LPTG GKT  A+ V    L     +K++ +     LV
Sbjct  86   FEVRDYQFNIVQRAFY-HNLLVALPTGLGKTFIASTVMLNFLRWFPESKMIFVAPTKPLV  144

Query  61   TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
             Q  +    +     +   +  D   R   G +     +   T ++++  L S      V
Sbjct  145  AQQIKACCSITGIPSSKVAILLDKT-RKNRGEIWDEKQVFFTTPQVVENDLAS----GLV  199

Query  121  ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG  180
            +    +L+V+DE H    +  YN I+       + R     ++L LTA+P    AS +DG
Sbjct  200  DPKTIALLVIDEAHRAKGNYAYNNIVKF-----MDRFTNSYRILALTATP----ASDVDG  250

Query  181  AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI  240
                V ++  NL+   +         + ++ ++  K+    +    D   + +  L   I
Sbjct  251  ----VQEIIDNLNISKVEVRSEESIDIIKYMKR--KRIIRRNIYQSDEIKECIDLLCTAI  304

Query  241  HDHLEMPELSRKFG-TQMYEQQVVKLSEAAAL--------AGLQEQRVYALHLRRYNDAL  291
               L++         T        +  +A+           G +    + L L       
Sbjct  305  APVLKVANGKGILEITDPSRINFFQCMDASRKIVANPTIPEGTKWSNFFTLQLLGVVGQC  364

Query  292  LIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALF---DDRKNELAHLAT--HGP  346
                 V  + +  +  +  + E + K     +  +L A F   +  K  +  + T    P
Sbjct  365  FRRLNVYGLRSFFSYFNEKYTEFMAKHSKKKSSNKLNADFYFSEPIKQLMKRIRTMIDDP  424

Query  347  E---NPKLEMLEKILQRQFSSSN--SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQ  401
            +   +PK+E + + L   F+ +N    + IIFT  R+SA  ++ ++++       +++  
Sbjct  425  KVFSHPKIEAMMEELDEFFTINNATDSKVIIFTEFRESALEIVRFIEKVG----KNLKPH  480

Query  402  LLIGA--------------------------------GNSSQSTHMTQRDQQEVIQKFQD  429
            + IG                                   ++Q   M Q+ Q+E+I+ F+ 
Sbjct  481  IFIGQAKERDKFDESNFGKKSKGKRVGKKQQDDSKSSSENAQINGMNQKLQKEIIKNFKQ  540

Query  430  GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFVATEGSRE  489
            GT N+LVATS+ EEGLDI   ++++ Y   ++ I  +Q  GR    +     +    + E
Sbjct  541  GTYNILVATSIGEEGLDIGEVDLIICYDSTSSPIKNIQRMGRTGRKRDGKVVLLFSSNEE  600

Query  490  LKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKR  533
             K +      E  ++Q +   Q +D  E    I    +  +  R
Sbjct  601  SKFDKAMNGYE-YIQQHIMKGQLIDLKEQNRMIPKDWEPKVEMR  643


>sp|P84634|DCL4_ARATH Dicer-like protein 4 OS=Arabidopsis thaliana 
OX=3702 GN=DCL4 PE=1 SV=2
Length=1702

 Score = 327 bits (838),  Expect = 9e-96, Method: Composition-based stats.
 Identities = 126/546 (23%), Positives = 223/546 (41%), Gaps = 57/546 (10%)

Query  4    RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKR--HLETVDGAKV-VVLVNRVHLV  60
            R YQ E+   A E +N+I++L TG GKT  A  +     HL       V + L   V LV
Sbjct  125  RRYQVELCKKATE-ENVIVYLGTGCGKTHIAVMLIYELGHLVLSPKKSVCIFLAPTVALV  183

Query  61   TQHGEEFRRMLDGRWTVTTLSGDMGP-RAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
             Q  +     ++ +  +      +    + +      +++L+ T ++L   L    +   
Sbjct  184  EQQAKVIADSVNFKVAIHCGGKRIVKSHSEWEREIAANEVLVMTPQILLHNL----QHCF  239

Query  120  VELTVFSLIVVDECHHTH--KDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASK  177
            +++   SL++ DECHH     +  Y  IM  + +     +   P++ G+TASP  G  S 
Sbjct  240  IKMECISLLIFDECHHAQQQSNHPYAEIMKVFYK---SESLQRPRIFGMTASPVVGKGSF  296

Query  178  LDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLK---  234
                ++  +    NL    + S ++   QL      P  +         D     ++   
Sbjct  297  QSENLSKSINSLENLLNAKVYSVESN-VQLDGFVSSPLVKVYYYRSALSDASQSTIRYEN  355

Query  235  -------------KLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYA  281
                         KL+   H    +  + R    + ++  +  L        +Q  ++  
Sbjct  356  MLEDIKQRCLASLKLLIDTHQTQTLLSMKRLLK-RSHDNLIYTLLNLGLWGAIQAAKI--  412

Query  282  LHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHL  341
                + N    + D     +  + + D Y       +    A    +A  ++  + L+  
Sbjct  413  ----QLNSDHNVQDEPVGKNPKSKICDTYL------SMAAEALSSGVAKDENASDLLSLA  462

Query  342  ATHGPENP-KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRA  400
            A   P    KL  L KIL   F      + IIF     +A +L   L   + L++   ++
Sbjct  463  ALKEPLFSRKLVQLIKILS-VFRLEPHMKCIIFVNRIVTARTLSCILNNLELLRS--WKS  519

Query  401  QLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT  460
              L+G  +  +S  M++R  + ++++FQ   LNLLVAT V EEGLDI  C +V+RY L  
Sbjct  520  DFLVGLSSGLKS--MSRRSMETILKRFQSKELNLLVATKVGEEGLDIQTCCLVIRYDLPE  577

Query  461  NEISMVQARGRARADQSVYAFVATEGSRE----LKRELINEA---LETLMEQAVAAVQKM  513
               S +Q+RGRAR  QS YAF+   G+ +    ++   +NE    LE     +     ++
Sbjct  578  TVTSFIQSRGRARMPQSEYAFLVDSGNEKEMDLIENFKVNEDRMNLEITYRSSEETCPRL  637

Query  514  DQAEYQ  519
            D+  Y+
Sbjct  638  DEELYK  643


>sp|Q9HE09|MFH2_SCHPO Putative ATP-dependent DNA helicase fml2 
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 
GN=fml2 PE=3 SV=1
Length=783

 Score = 315 bits (806),  Expect = 2e-95, Method: Composition-based stats.
 Identities = 107/527 (20%), Positives = 200/527 (38%), Gaps = 38/527 (7%)

Query  2    ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVT  61
            + R+YQ E    AL   N+++ LPTG GKT  AA V   +      +K++ L     L+ 
Sbjct  110  QYRNYQKEFCEQAL-FHNLLLALPTGLGKTFIAAVVMLNYFRWFPESKIIFLAPTKPLLL  168

Query  62   QHGEEFRRMLDGRWTVT-TLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
            Q       +       T  L+G++ P            +   T + LQ  L     +   
Sbjct  169  QQRVACSNVAGMSPGATAELNGEVSPDR-RLFEYNTKRVFFMTPQTLQNDLKEHLLDA--  225

Query  121  ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG  180
                   ++ DE H    +  Y  +M   L     R+    +VLGLTA+PG+  AS    
Sbjct  226  --KSIICLIFDEAHRATGNHSYAQVMRAVL-----RSNSHFRVLGLTATPGSSTAS----  274

Query  181  AINHVLQLCANLDTWCIMSPQNCCPQLQEHS-QQPCKQYNLCHRRSQDPFGDLLKKLMDQ  239
                V ++   L    ++        ++ +   +  +   +      +        L   
Sbjct  275  ----VQKVVDCLHISKLIVRNEESIDIRSYVFHKKIQLIKVTISSEMNILKSDFANLYRP  330

Query  240  IHDHL---EMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDT  296
              + L   ++  ++ +          V L + +  +   + +  +  +  +   +     
Sbjct  331  YFNFLRQKKLIPINCECLNIKAYTLFVSLRKYSFSSKNVQSKEKSKIMSCFTLLISCAHI  390

Query  297  VRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGP------ENPK  350
               +D    +Q +                +   LF  +         H         +PK
Sbjct  391  TYLLDCHGIIQFYQKLVETKNKAEGKGSGQSFWLFTSKPFAFYLEHLHNKIQGLSLNHPK  450

Query  351  LEMLEKILQRQFSSSNSP----RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA  406
            +  L ++L+  F  ++      R +IFT  R +A  +   L   + +    +RA L IG 
Sbjct  451  MNHLLELLKEHFKDTSEGYQNQRVMIFTEFRNTAEYITTTLLAIRPM----VRASLFIGQ  506

Query  407  GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV  466
             NS+ ST M Q  Q+E I +F+ G +N LVATS+ EEGLDI   ++++ Y   ++ I  +
Sbjct  507  ANSAYSTGMNQMQQKETIDQFRAGVINTLVATSIGEEGLDIGDTDMIICYDASSSPIRTI  566

Query  467  QARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM  513
            Q  GR    +S   FV      E  +   ++     +++ + + +K+
Sbjct  567  QRMGRTGRKKSGKVFVLLTEDCEDSKWERSQVSYRRVQKVIESGKKI  613


>sp|Q3EBC8|DCL2_ARATH Endoribonuclease Dicer homolog 2 OS=Arabidopsis 
thaliana OX=3702 GN=At3g03300 PE=1 SV=2
Length=1388

 Score = 324 bits (831),  Expect = 2e-95, Method: Composition-based stats.
 Identities = 116/538 (22%), Positives = 214/538 (40%), Gaps = 34/538 (6%)

Query  4    RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRH---LETVDGAKVVVLVNRVHLV  60
            RSYQ E +  A++ +N I++L TG+GKT  A  + + +            V LV +V LV
Sbjct  25   RSYQVEALEKAIK-QNTIVFLETGSGKTLIAIMLLRSYAYLFRKPSPCFCVFLVPQVVLV  83

Query  61   TQHGEEFRRMLDGRWTVTTLSGDMGPRAG----FGHLARCHDLLICTAELLQMALTSPEE  116
            TQ  E  +   D +  V    GDMG        +      +++L+ T  +L  AL     
Sbjct  84   TQQAEALKMHTDLK--VGMYWGDMGVDFWDSSTWKQEVDKYEVLVMTPAILLDAL----R  137

Query  117  EEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQP-LPQVLGLTASPGTGGA  175
               + L++  +++VDECHH      Y  IM ++   +L      +P++ G+TAS      
Sbjct  138  HSFLSLSMIKVLIVDECHHAGGKHPYACIMREFYHKELNSGTSNVPRIFGMTASLVKTKG  197

Query  176  SKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKK  235
              LD     + +L   +++                   P  +Y   H +   P    L +
Sbjct  198  ENLDSYWKKIHELETLMNSKVYTCENESVLAGFVPFSTPSFKY-YQHIKIPSPKRASLVE  256

Query  236  LMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHD  295
             ++++     +   +    +   +    +L   ++        +  L  ++   +L    
Sbjct  257  KLERLTIKHRLSLGTLDLNSSTVDSVEKRLLRISSTLTYCLDDLGILLAQKAAQSLSASQ  316

Query  296  TVRAVDALAALQDFYHREHVTKTQILCAERRLLA----LFDDRKNELAHLATHGPENPKL  351
                 D+    +       + K     A +  LA      +     +   A  G    K 
Sbjct  317  N----DSFLWGELNMFSVALVKKFCSDASQEFLAEIPQGLNWSVANINGNAEAGLLTLKT  372

Query  352  EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ  411
              L + L   +SS  + R IIF     +A  L   L +       + + + + G  +  Q
Sbjct  373  VCLIETLLG-YSSLENIRCIIFVDRVITAIVLESLLAEILP-NCNNWKTKYVAGNNSGLQ  430

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
            +   T++ Q E+++ F+ G +N++VATS+ EEGLD+  CN+V+R+   +N  S +Q+RGR
Sbjct  431  NQ--TRKKQNEIVEDFRRGLVNIIVATSILEEGLDVQSCNLVIRFDPASNICSFIQSRGR  488

Query  472  ARADQSVYAFVATEGSRELKRELI------NEALETLMEQAVAAVQKMDQAEYQAKIR  523
            AR   S Y  +   G    +  L+          E  ++ ++     +     +   R
Sbjct  489  ARMQNSDYLMMVESGDLLTQSRLMKYLSGGKRMREESLDHSLVPCPPLPDDSDEPLFR  546


>sp|Q6TUI4|DICER_BOVIN Endoribonuclease Dicer OS=Bos taurus OX=9913 
GN=DICER1 PE=2 SV=3
Length=1923

 Score = 322 bits (825),  Expect = 6e-94, Method: Composition-based stats.
 Identities = 138/594 (23%), Positives = 229/594 (39%), Gaps = 102/594 (17%)

Query  3    LRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETV------DGAKVVVLVNR  56
             R YQ E++  AL+  N I+ L TG+GKT  A  + K     +      +G + V LVN 
Sbjct  44   PRKYQVELLEAALD-HNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNRNGKRTVFLVNS  102

Query  57   VHLVTQHGEEFRRMLD---GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTS  113
             + V Q     R   D   G ++   +S        +      H +LI T  +    L  
Sbjct  103  ANQVAQQVSAVRTHSDLKVGEYSNLEVSASWTKEK-WNQEFTKHQVLIMTCYVALNVL--  159

Query  114  PEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTG  173
              +  ++ L+  +L+V DECH    D  Y  IM        +     P++LGLTAS   G
Sbjct  160  --KNGYLSLSDINLLVFDECHLAILDHPYREIMK-----LCENCPSCPRILGLTASILNG  212

Query  174  GASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLC--HRRSQDPFGD  231
                 +     + +L   L +            L  ++ QPC+    C         +  
Sbjct  213  KCDP-EELEEKIQKLEKILKS--NAETATDLVVLDRYTSQPCEIVVDCGPFTDRSGLYER  269

Query  232  LLKKLMDQIH--DHLEMPELSRKFGTQMYEQQVVKLSEAAA--LAGLQEQRVYALHLRRY  287
            LL +L + ++  +   +   S++  + +  +Q++    A    L      +V  + +R  
Sbjct  270  LLMELEEALNFINDCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVREL  329

Query  288  NDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPE  347
               +           L     F       K   LC E    A  D +             
Sbjct  330  QKHIKHEQEELHRKFLLFTDTFLR-----KIHALCEEHFSPASLDLKF-----------V  373

Query  348  NPKLEMLEKILQRQ-------FSS------------------------------------  364
             PK+  L +IL++        F S                                    
Sbjct  374  TPKVIKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDEEDEEIEEKEKPETN  433

Query  365  -----SNSPRGIIFTRTRQSAHSLLLWLQQ--QQGLQTVDIRAQLLIGAG---NSSQSTH  414
                 +N   GIIF   R +A  L   +++  +Q  +   I +  + G G   N  ++  
Sbjct  434  FPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQ  493

Query  415  MT--QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA  472
            M    R Q+EV++KF+    NLL+ATS+ EEG+DIP CN+VVR+ L T   S VQ++GRA
Sbjct  494  MEAEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRA  553

Query  473  RADQSVYAFVA-TEGSRELKREL-INEALETLMEQAVAAVQKMDQAEYQAKIRD  524
            RA  S Y  +A T+  +  + +L   +A+E ++    +      +A+ +  + D
Sbjct  554  RAPISNYVMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGEADTEPVVDD  607


>sp|Q25BN1|DICER_CHICK Endoribonuclease Dicer OS=Gallus gallus 
OX=9031 GN=DICER1 PE=2 SV=3
Length=1921

 Score = 321 bits (822),  Expect = 2e-93, Method: Composition-based stats.
 Identities = 137/594 (23%), Positives = 227/594 (38%), Gaps = 102/594 (17%)

Query  3    LRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLE------TVDGAKVVVLVNR  56
             R YQ E++  AL+  N I+ L TG+GKT  A  + K            +G + V LVN 
Sbjct  44   PRKYQVELLEAALD-HNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNKNGKRTVFLVNS  102

Query  57   VHLVTQHGEEFRRMLD---GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTS  113
             + V Q     R   D   G ++   ++        +      H +L+ T  +    L  
Sbjct  103  ANQVAQQVSAVRTHSDLKVGEYSSLEVTESWTKEK-WSQEFSKHQVLVMTCHVALTVL--  159

Query  114  PEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTG  173
                E++ L+  +L+V DECH   +D  Y  IM        +     P++LGLTAS   G
Sbjct  160  --RNEYLSLSNINLLVFDECHLAIQDHPYREIMK-----ICEDYPSCPRILGLTASILNG  212

Query  174  GASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLC--HRRSQDPFGD  231
                 +                   +       L  ++ QPC+    C  +      +G 
Sbjct  213  KCDPAELEEKIKKLEKILKSNAETATD---LVVLDRYTSQPCEIVVDCGPYTDKSGLYGR  269

Query  232  LLKKLMDQIH--DHLEMPELSRKFGTQMYEQQVVKLSEAAA--LAGLQEQRVYALHLRRY  287
            LL++L + +H  +   +   S++  + +  +Q++    A    L      +V  + +R  
Sbjct  270  LLRELDEALHFLNDCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVREL  329

Query  288  NDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPE  347
               +           L     F       K   LC E    A  D +             
Sbjct  330  QKYIKHEQEELHRKFLLFTDTFLR-----KIHALCEEHFSPASLDLKF-----------V  373

Query  348  NPKLEMLEKILQRQ-------FSS------------------------------------  364
             PK+  L +IL++        F S                                    
Sbjct  374  TPKVIKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDEDEEIEEKEKPETN  433

Query  365  -----SNSPRGIIFTRTRQSAHSLLLWLQQ--QQGLQTVDIRAQLLIGAG---NSSQSTH  414
                 +N   GIIF   R +A  L   +++  +Q  +   I +  + G G   N  ++  
Sbjct  434  FPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQ  493

Query  415  M--TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA  472
            M    R Q+EV++KF+    NLL+ATS+ EEG+DIP CN+VVR+ L T   S VQ++GRA
Sbjct  494  MEVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRA  553

Query  473  RADQSVYAFVA-TEGSRELKREL-INEALETLMEQAVAAVQKMDQAEYQAKIRD  524
            RA  S Y  +A T+  +  + +L   +A+E ++    +      + E +  + D
Sbjct  554  RAPISNYIMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTSETETEPIVDD  607


>sp|Q8IYD8|FANCM_HUMAN Fanconi anemia group M protein OS=Homo 
sapiens OX=9606 GN=FANCM PE=1 SV=2
Length=2048

 Score = 320 bits (820),  Expect = 3e-93, Method: Composition-based stats.
 Identities = 110/560 (20%), Positives = 209/560 (37%), Gaps = 79/560 (14%)

Query  2    ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVT  61
             +R YQ  +   AL   N ++ LPTG GKT  AA V           KVV +     LVT
Sbjct  90   PVRDYQLHISRAAL-FCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVVFMAPTKPLVT  148

Query  62   QHGEEF-RRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
            Q  E   + M   +  +  ++G     +    +     +L  T +++   L+        
Sbjct  149  QQIEACYQVMGIPQSHMAEMTGSTQA-STRKEIWCSKRVLFLTPQVMVNDLS----RGAC  203

Query  121  ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG  180
                   +V+DE H    +  Y  ++ + ++          ++L L+A+PG+        
Sbjct  204  PAAEIKCLVIDEAHKALGNYAYCQVVRELVKYTNH-----FRILALSATPGS--------  250

Query  181  AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI  240
             I  V Q+  NL    I       P +  +S +   +      +   P G+ L  +    
Sbjct  251  DIKAVQQVITNLLIGQIELRSEDSPDILTYSHERKVE------KLIVPLGEELAAIQKTY  304

Query  241  HDHLE---------------MPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRV---YAL  282
               LE                     K+   +   Q  K + +  + G+Q+  +   +A+
Sbjct  305  IQILESFARSLIQRNVLMRRDIPNLTKYQIILARDQFRK-NPSPNIVGIQQGIIEGEFAI  363

Query  283  HLRRYNDALLIHD-------------------TVRAVDALAALQDFYHREHVTKTQILCA  323
             +  Y+   L+                       R+ + L   +DF    +  +      
Sbjct  364  CISLYHGYELLQQMGMRSLYFFLCGIMDGTKGMTRSKNELGRNEDFMKLYNHLECMFART  423

Query  324  ERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSN----------SPRGIIF  373
                       +    +       +PKL+ LE+++   F S N            R +IF
Sbjct  424  RSTSANGISAIQQGDKN-KKFVYSHPKLKKLEEVVIEHFKSWNAENTTEKKRDETRVMIF  482

Query  374  TRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN  433
            +  R S   +   L Q Q +    IR    +G  +   +   TQ++Q EV+++F+DG  N
Sbjct  483  SSFRDSVQEIAEMLSQHQPI----IRVMTFVGHASGKSTKGFTQKEQLEVVKQFRDGGYN  538

Query  434  LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFVATEGSRELKRE  493
             LV+T V EEGLDI   ++++ +    + I +VQ  GR    +     +     RE +  
Sbjct  539  TLVSTCVGEEGLDIGEVDLIICFDSQKSPIRLVQRMGRTGRKRQGRIVIILSEGREERIY  598

Query  494  LINEALETLMEQAVAAVQKM  513
              +++ +  + +A+++ +++
Sbjct  599  NQSQSNKRSIYKAISSNRQV  618


>sp|Q8R418|DICER_MOUSE Endoribonuclease Dicer OS=Mus musculus 
OX=10090 GN=Dicer1 PE=1 SV=3
Length=1916

 Score = 319 bits (818),  Expect = 5e-93, Method: Composition-based stats.
 Identities = 139/594 (23%), Positives = 224/594 (38%), Gaps = 102/594 (17%)

Query  3    LRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG------AKVVVLVNR  56
             R YQ E++  AL+  N I+ L TG+GKT  A  + K     + G       + V LVN 
Sbjct  44   PRKYQVELLEAALD-HNTIVCLNTGSGKTFIAVLLTKELAHQIRGDLNPHAKRTVFLVNS  102

Query  57   VHLVTQHGEEFRRMLD---GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTS  113
             + V Q     R   D   G ++   ++        +      H +LI T  +    L  
Sbjct  103  ANQVAQQVSAVRTHSDLKVGEYSDLEVNASWTKER-WSQEFTKHQVLIMTCYVALTVL--  159

Query  114  PEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTG  173
              +  ++ L+  +L+V DECH    D  Y  IM        +     P++LGLTAS   G
Sbjct  160  --KNGYLSLSDINLLVFDECHLAILDHPYREIMK-----LCESCPSCPRILGLTASILNG  212

Query  174  GASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLC--HRRSQDPFGD  231
                 +     + +L   L              L  ++ QPC+    C         +  
Sbjct  213  KCDP-EELEEKIQKLERIL--RSDAETATDLVVLDRYTSQPCEIVVDCGPFTDRSGLYER  269

Query  232  LLKKLMDQIH--DHLEMPELSRKFGTQMYEQQVVKLSEAAA--LAGLQEQRVYALHLRRY  287
            LL +L   +   +   +   S++  + +  +Q++    A    L      +V  + +R  
Sbjct  270  LLMELEAALDFINDCNVAVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVREL  329

Query  288  NDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPE  347
               +           L             K   LC E    A  D +             
Sbjct  330  QKYIKHEQEELHRKFLLFTDTLLR-----KIHALCEEYFSPASLDLK-----------YV  373

Query  348  NPKLEMLEKILQRQ-------FSS------------------------------------  364
             PK+  L +IL++        F S                                    
Sbjct  374  TPKVMKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDDDEEIEEKEKPETN  433

Query  365  -----SNSPRGIIFTRTRQSAHSLLLWLQQ--QQGLQTVDIRAQLLIGAG---NSSQSTH  414
                 +N   GIIF   R +A  L   +++  +Q  +   I +  + G G   N  +S  
Sbjct  434  FPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRSKQ  493

Query  415  M--TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA  472
            M    R Q+EV++KF+    NLL+ATSV EEG+DIP CN+VVR+ L T   S VQ++GRA
Sbjct  494  MEAEFRKQEEVLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRA  553

Query  473  RADQSVYAFVA-TEGSRELKREL-INEALETLMEQAVAAVQKMDQAEYQAKIRD  524
            RA  S Y  +A T+  +  + +L   +A+E ++    +      +A+  A + D
Sbjct  554  RAPISNYVMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSADGAEADVHAGVDD  607


>sp|Q9UPY3|DICER_HUMAN Endoribonuclease Dicer OS=Homo sapiens 
OX=9606 GN=DICER1 PE=1 SV=3
Length=1922

 Score = 316 bits (809),  Expect = 8e-92, Method: Composition-based stats.
 Identities = 135/579 (23%), Positives = 223/579 (39%), Gaps = 102/579 (18%)

Query  3    LRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETV------DGAKVVVLVNR  56
             R YQ E++  AL+  N I+ L TG+GKT  A  + K     +      +G + V LVN 
Sbjct  44   PRKYQVELLEAALD-HNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFSRNGKRTVFLVNS  102

Query  57   VHLVTQHGEEFRRMLD---GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTS  113
             + V Q     R   D   G ++   ++        +      H +LI T  +    L  
Sbjct  103  ANQVAQQVSAVRTHSDLKVGEYSNLEVNASWTKER-WNQEFTKHQVLIMTCYVALNVL--  159

Query  114  PEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTG  173
              +  ++ L+  +L+V DECH    D  Y  IM        +     P++LGLTAS   G
Sbjct  160  --KNGYLSLSDINLLVFDECHLAILDHPYREIMK-----LCENCPSCPRILGLTASILNG  212

Query  174  GASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLC--HRRSQDPFGD  231
                 +     + +L   L +            L  ++ QPC+    C         +  
Sbjct  213  KCDP-EELEEKIQKLEKILKS--NAETATDLVVLDRYTSQPCEIVVDCGPFTDRSGLYER  269

Query  232  LLKKLMDQIH--DHLEMPELSRKFGTQMYEQQVVKLSEAAA--LAGLQEQRVYALHLRRY  287
            LL +L + ++  +   +   S++  + +  +Q++    A    L      +V  + +R  
Sbjct  270  LLMELEEALNFINDCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVREL  329

Query  288  NDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPE  347
               +           L     F       K   LC E    A  D +             
Sbjct  330  QKYIKHEQEELHRKFLLFTDTFLR-----KIHALCEEHFSPASLDLKF-----------V  373

Query  348  NPKLEMLEKILQRQ-------FSS------------------------------------  364
             PK+  L +IL++        F S                                    
Sbjct  374  TPKVIKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDEDEEIEEKEKPETN  433

Query  365  -----SNSPRGIIFTRTRQSAHSLLLWLQQ--QQGLQTVDIRAQLLIGAG---NSSQSTH  414
                 +N   GIIF   R +A  L   +++  +Q  +   I +  + G G   N  ++  
Sbjct  434  FPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQ  493

Query  415  M--TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA  472
            M    R Q+EV++KF+    NLL+ATS+ EEG+DIP CN+VVR+ L T   S VQ++GRA
Sbjct  494  MEAEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRA  553

Query  473  RADQSVYAFVA-TEGSRELKREL-INEALETLMEQAVAA  509
            RA  S Y  +A T+  +  + +L   +A+E ++    + 
Sbjct  554  RAPISNYIMLADTDKIKSFEEDLKTYKAIEKILRNKCSK  592


>sp|Q9VDA0|FANCM_DROME DEAD-box ATP-dependent DNA helicase Fancm 
OS=Drosophila melanogaster OX=7227 GN=Fancm PE=1 SV=2
Length=1489

 Score = 315 bits (807),  Expect = 8e-92, Method: Composition-based stats.
 Identities = 121/593 (20%), Positives = 239/593 (40%), Gaps = 65/593 (11%)

Query  1    MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV  60
            + LRSYQ  ++  AL  KN ++ LPTG GKT  AA V           K+V +     LV
Sbjct  56   LPLRSYQQTIVQSAL-FKNTLVVLPTGLGKTFIAAVVMYNFYRWYPKGKIVFMAPTRPLV  114

Query  61   TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
            +Q     ++++      T       PR     L     +   T +++   +   + E   
Sbjct  115  SQQIHASQKIMPFPSEDTVQLTGQLPRPKRAELWASKRVFFATPQVVHSDMLEADGECSF  174

Query  121  ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG  180
                  LIVVDE H       Y  +        L       ++L L+A+PG         
Sbjct  175  PFGSIKLIVVDEAHRAKGRYAYTQVAD-----CLMARNRYFRMLALSATPGRT-------  222

Query  181  AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI  240
             +  V  +C NL    +    +    +Q +  +  +         ++   +  ++L+  I
Sbjct  223  -MEDVAAVCRNLYISNLQVRWDTSIDVQPYIHR--RTIRTIVVSLKERIKEPRERLLQII  279

Query  241  HDHLEMPELSRKFGTQM---YEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTV  297
              +L     +  F           ++   ++      Q QR    ++   N A+ I    
Sbjct  280  EPYLRQLMEAEIFKGNKGTVSRNSLLFEQKSFVERSAQGQRHPDHNIIMGNFAMCIS-MY  338

Query  298  RAVDALA------ALQDFYHREHVTKTQILCAERRLLALFDDRKNEL--------AHLAT  343
             ++D +        + +F   +   +  +L  +  L  L +  + EL         H  T
Sbjct  339  HSLDLMERHGLRVFVNNFDADDDGREKFVLARDGNLRNLVEQVRQELGANPLDYTTHAMT  398

Query  344  HGPENP----------KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGL  393
            +G   P          K E L ++L + F ++   R I+F   R+S   +   L Q + +
Sbjct  399  NGEVPPLPSDLDFGHAKYEKLRQVLVQHFQANPDSRAIVFCEYRESVMLIHRLLLQHRPV  458

Query  394  QTVDIRAQLLIGAGNSSQSTH-MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNV  452
                +R +  +G G++  +++ +TQ+ Q +++  F+ GT N+LVATS+ EEGLD+    +
Sbjct  459  ----LRPRCFVGQGSTVGASYALTQKQQLQIMTDFRSGTSNVLVATSIGEEGLDVGEVEM  514

Query  453  VVRYGLL-TNEISMVQARGR-ARADQSVYAFVATEG-SRELKRELI---NEALETLMEQA  506
            +V + +  TN    +Q  GR  R        + TEG  +++ ++++   ++  + L+  +
Sbjct  515  IVCFDICSTNPTRFIQRIGRTGRKKNGEVVMLVTEGREQQVLKDVLANKDQINKKLLNSS  574

Query  507  VAAVQ------KMDQAEYQAKIRDLQQAALTKRAAQ----AAQRENQRQQFPV  549
            V  +       +M  +++Q K  +     + +   +    A  +E+++++ PV
Sbjct  575  VVKLSLYEQNPRMVPSKFQPKCEEKHMEPVAEEKPKPKSAAKTKESRKRKQPV  627


>sp|A0MQH0|DICER_CRIGR Endoribonuclease Dicer OS=Cricetulus griseus 
OX=10029 GN=DICER1 PE=2 SV=3
Length=1917

 Score = 314 bits (805),  Expect = 3e-91, Method: Composition-based stats.
 Identities = 137/579 (24%), Positives = 221/579 (38%), Gaps = 102/579 (18%)

Query  3    LRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG------AKVVVLVNR  56
             R YQ E++  AL+  N I+ L TG+GKT  A  + K     + G       + V LVN 
Sbjct  44   PRKYQVELLEAALD-HNTIVCLNTGSGKTFIAVLLTKELAHQIRGDLNPRAKRTVFLVNS  102

Query  57   VHLVTQHGEEFRRMLD---GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTS  113
             + V Q     R   D   G ++   ++        +      H +LI T  +    L  
Sbjct  103  ANQVAQQVSAVRTHSDLKVGEYSNLEVNASWTKER-WSQEFTKHQVLIMTCYVALNVL--  159

Query  114  PEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTG  173
              +  ++ L+  +L+V DECH    D  Y  IM        +     P++LGLTAS   G
Sbjct  160  --KNGYLSLSDINLLVFDECHLAILDHPYREIMK-----LCESCPSCPRILGLTASILNG  212

Query  174  GASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLC--HRRSQDPFGD  231
                 +     + +L   L +            L  ++ QPC+    C         +  
Sbjct  213  KCDP-EELEEKIQKLEKILKS--NAETATDLVVLDRYASQPCEIVVDCGPFTDRSGLYER  269

Query  232  LLKKLMDQIH--DHLEMPELSRKFGTQMYEQQVVKLSEAAA--LAGLQEQRVYALHLRRY  287
            LL +L + I+  +   +   S++  + +  +Q++    A    L      +V  + +R  
Sbjct  270  LLMELEEAINFINDCNVSVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVREL  329

Query  288  NDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPE  347
               +           L             K   LC E    A  D +             
Sbjct  330  QKYIKHEQEELHRKFLLFTDTLLR-----KIHALCEEHFSPASLDLK-----------YV  373

Query  348  NPKLEMLEKILQRQ-------FSS------------------------------------  364
             PK+  L +IL++        F S                                    
Sbjct  374  TPKVMKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDDDEEIEEKEKPETN  433

Query  365  -----SNSPRGIIFTRTRQSAHSLLLWLQQ--QQGLQTVDIRAQLLIGAG---NSSQSTH  414
                 +N   GIIF   R +A  L   +++  +Q  +   I +  + G G   N  +S  
Sbjct  434  FPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRSKQ  493

Query  415  MT--QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA  472
            M    R Q+EV++KF+    NLL+ATSV EEG+DIP CN+VVR+ L T   S VQ++GRA
Sbjct  494  MEAEFRKQEEVLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRA  553

Query  473  RADQSVYAFVA-TEGSRELKREL-INEALETLMEQAVAA  509
            RA  S Y  +A T+  +  + +L   +A+E ++    + 
Sbjct  554  RAPISNYVMLADTDKIQSFEEDLKTYKAIEKILRNKCSK  592


>sp|A0A1D5PRR9|FANCM_CHICK Fanconi anemia group M protein OS=Gallus 
gallus OX=9031 GN=FANCM PE=1 SV=1
Length=2041

 Score = 314 bits (805),  Expect = 3e-91, Method: Composition-based stats.
 Identities = 122/614 (20%), Positives = 207/614 (34%), Gaps = 93/614 (15%)

Query  4    RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQH  63
            R YQ  +   AL   N ++ LPTG GKT  AA V           KV+ L     LV Q 
Sbjct  85   RPYQLRMARAAL-FANTLLCLPTGLGKTFVAAVVMYNFYRWFPSGKVLFLAPTKALVAQQ  143

Query  64   GEEFRR-MLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
             E   + M      +  ++G          L     +   T +++   L+          
Sbjct  144  MEACAQLMGIPGRDMAEMTGGTQA-LSRRELWASRRVFFLTPQIMVNDLS----RGTCPA  198

Query  123  TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAI  182
                 +VVDE H    +  Y  ++ +     L R     +VL LTA+PG+          
Sbjct  199  VEVKCLVVDEAHKALGNHAYCQVVKE-----LSRYTTQFRVLALTATPGS--------DT  245

Query  183  NHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHD  242
              V Q+ +NL    I       P++Q +S +   +      +   P G+ L  +      
Sbjct  246  KAVQQVVSNLLIAQIELCSEDSPEIQPYSHERQVE------KIVVPLGEELGGIQRAYIH  299

Query  243  HLEMP---------------ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRV---YALHL  284
             LE                     K+   +   Q  K + +    G+Q   +   +AL +
Sbjct  300  VLETFAGRLIKLGVLARRDVPSLTKYQIILARDQYRK-NPSPQNVGMQPGIIEGDFALCI  358

Query  285  RRYNDALLIHDT-------------------VRAVDALAALQDFYHREHVTKTQILCAER  325
              Y+   L+                       R  + L   +DF               +
Sbjct  359  SLYHGYELLQQMGVRSLFIYLCGIMDGSKGLTRTKNELGRNEDFMRLYQQLTDMFSDTCQ  418

Query  326  RLLALFDDRKNELAHLAT-HGPENPKLEMLEKILQRQFSSSN--------------SPRG  370
                    +   ++         +PKL+ LE+I+   F S                  R 
Sbjct  419  TSANGNLHKSRTVSENKKEFIYSHPKLKKLEEIVIEHFKSRKMGCSDQTTSGGTCVDTRV  478

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            +IF+  R S   +   L +   +    +R    +G      +   TQ++Q EV+++F++G
Sbjct  479  MIFSSFRDSVQEIAEMLSRFSPV----VRVMTFVGHSTGKSTKGFTQKEQLEVVKRFREG  534

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRE  489
              N LV+T V EEGLDI   ++++ +    + I +VQ  GR  R  Q     +  EG  E
Sbjct  535  GYNTLVSTCVGEEGLDIGEVDLIICFDAQKSPIRLVQRMGRTGRQRQGRVVVILAEGREE  594

Query  490  L-------KRELINEALE-TLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRE  541
                     R  I +A+    M        +M       ++  +      K     + R 
Sbjct  595  RTYNQSQSNRRSIQKAISGNKMLHFYQHSPRMIPEGINPELHRM-FITAEKYKPNDSGRL  653

Query  542  NQRQQFPVEHVQLL  555
             + +   + H   L
Sbjct  654  PKGRPSSLHHKSAL  667


>sp|Q6TV19|DICER_DANRE Endoribonuclease Dicer OS=Danio rerio OX=7955 
GN=dicer1 PE=2 SV=2
Length=1865

 Score = 313 bits (801),  Expect = 8e-91, Method: Composition-based stats.
 Identities = 129/578 (22%), Positives = 214/578 (37%), Gaps = 74/578 (13%)

Query  3    LRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAK---RHLETVDGAKVVVLVNRVHL  59
             R YQ E++  ALE  N I+ L TG+GKT  A  + K     +   +G + V LVN    
Sbjct  34   PRKYQVELLEAALE-HNTIVCLNTGSGKTFIAVLLIKELSHQIRGENGKRTVFLVNAASS  92

Query  60   VTQHGEEFRRMLDGRWTVTTLSGDMG--PRAGFGHLARCHDLLICTAELLQMALTSPEEE  117
            V Q     R   D +     +S DM   P   +      + +L+ T  +    L    + 
Sbjct  93   VAQQASTVRTHSDLQVGD-YMSEDMTSWPEEMWNREMIENQVLVMTCHIFLHVL----KN  147

Query  118  EHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQP-LPQVLGLTASPGTGGAS  176
              + L+  +L+V DECH       Y  IM       +    P  P++LGLTAS   G   
Sbjct  148  GVLPLSKINLLVFDECHLAITGHPYREIMK------ICEGCPSCPRILGLTASILNGKCD  201

Query  177  KLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLC-HRRSQDPFGDLLKK  235
              D     +  L   L +            L  ++ QP ++   C   + Q    + L  
Sbjct  202  PCD-LEEKIQNLEKILQS--NAETATDLVVLDRYASQPREEVLDCGQYQDQSGLSERLLN  258

Query  236  LMDQIHDHLEMPELSRKFGTQ----MYEQQVVKLSE-AAALAGLQEQRVYALHLRRYNDA  290
             +D+  + L    LS     +    + +Q +         L      +   + +R     
Sbjct  259  ELDEALNFLNDCNLSVHREDRDPTFISKQVLNDCRAVLTVLGPWCADKAAGIMVRELQKY  318

Query  291  LLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPK  350
            +           L        + H    +        L     +   L  +     E   
Sbjct  319  IKHEQEELNRKFLLFTDTILRKIHALCEEHFSPASLDLKFVTPKVIRLLEIL---HEYKP  375

Query  351  LEMLEKILQRQFSSSNSPR-----------------------------------GIIFTR  375
             E  +      +++ N                                      GIIF  
Sbjct  376  FERQQFESVEWYNNRNQDNYVSWSDSEDDDEDEEAEAKEKTEANFPSPFTNILCGIIFVE  435

Query  376  TRQSAHSLLLWLQQ--QQGLQTVDIRAQLLIGAG---NSSQSTHMT--QRDQQEVIQKFQ  428
             R +A  L   +++  +Q  +   I +  + G     N  ++  M    R Q+EV++KF+
Sbjct  436  RRYTAVVLNRLIKEAGKQDPELAYISSNFITGHSIGKNQPRNKQMEVEFRKQEEVLRKFR  495

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFVA-TEGS  487
                NLL+ATS+ EEG+DIP CN+VVR+ L T   S VQ++GRARA  S Y  +A +E +
Sbjct  496  AHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPVSNYIMLADSERT  555

Query  488  RELKREL-INEALETLMEQAVAAVQKMDQAEYQAKIRD  524
            +  + +L   +A+E ++    +   + +  E +    D
Sbjct  556  KTFQEDLKTYKAIEKILRNKCSKSAECNDFELEPVTDD  593


>sp|B3DLA6|DICER_XENTR Endoribonuclease Dicer OS=Xenopus tropicalis 
OX=8364 GN=dicer1 PE=2 SV=2
Length=1893

 Score = 313 bits (801),  Expect = 1e-90, Method: Composition-based stats.
 Identities = 130/579 (22%), Positives = 226/579 (39%), Gaps = 71/579 (12%)

Query  3    LRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG------AKVVVLVNR  56
             R YQ E++  AL+  N I+ L +G+GKT  A  ++K     + G       + V LVN 
Sbjct  34   PRKYQVELLEAALD-HNTIVCLNSGSGKTFIAVLLSKELSYQIRGDFSKNTKRTVFLVNS  92

Query  57   VHLVTQHGEEFRRMLD---GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTS  113
               V+Q     R   D   G ++    +        +      H +L+ T  +    L S
Sbjct  93   EKQVSQQVSAVRTHTDLKVGEYSDQEKTQCWAKERWYLEF-ETHQVLVMTCHIFLNVLKS  151

Query  114  PEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTG  173
                 +V L+  +L+V DECH   +D  Y  IM        +  QP P++LGLTAS   G
Sbjct  152  ----GNVSLSNINLLVFDECHLAIQDHPYREIMK-----ICESCQPCPRILGLTASILNG  202

Query  174  GASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLC--HRRSQDPFGD  231
                 D     + +L   L              L  ++ QPC+    C  +      +  
Sbjct  203  KCDPRD-LEEKIQKLEEIL--RSNAETATDLVVLDRYASQPCEIVLDCGPYIDKSGLYQR  259

Query  232  LLKKLMDQIH--DHLEMPELSRKFGTQMYEQQVVKLSEAAAL--AGLQEQRVYALHLRRY  287
            LL +L + ++      +   S++  + +  +Q++   +   L        +V  + +R  
Sbjct  260  LLNELDEALNFLIDCNISTHSKERDSTLISKQILSDCQTVLLVLGPWCADKVAGMMVREL  319

Query  288  NDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATH--G  345
               +           L        + H    +        +     +  +L  +      
Sbjct  320  QKYIKHEQEELHRKFLLFTDTILRKIHALCEEHFSPASLDMKFVTPKVIKLLEILRKYKP  379

Query  346  PENPKLEMLE-----------------------------KILQRQFSS--SNSPRGIIFT  374
             E  + E +E                             +  +  F S  +N   GIIF 
Sbjct  380  YERQQFESVEWYNNRNQDNYVSWSDSEDDDDEDEEIEEKEKTETSFPSPFTNILCGIIFV  439

Query  375  RTRQSAHSLLLWLQQ--QQGLQTVDIRAQLLIGAG---NSSQSTHMT--QRDQQEVIQKF  427
              R +A  L   +++  +Q  +   I +  + G G   N  ++  M    R Q+EV++KF
Sbjct  440  ERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEVEFRKQEEVLRKF  499

Query  428  QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFVA-TEG  486
            +    NLL+ATS+ EEG+DIP CN+VVR+ L +   S VQ++GRARA  S Y  +A ++ 
Sbjct  500  RAHETNLLIATSIVEEGVDIPKCNLVVRFDLPSEYRSYVQSKGRARAPISNYIMLADSDK  559

Query  487  SRELKREL-INEALETLMEQAVAAVQKMDQAEYQAKIRD  524
             +  + +L   +A+E ++    +        E +  + D
Sbjct  560  IKAFEEDLKTYKAIEKILRNKCSKSIDCGNTESEPIVDD  598


>sp|Q8LMR2|DCL1_ORYSJ Endoribonuclease Dicer homolog 1 OS=Oryza 
sativa subsp. japonica OX=39947 GN=DCL1 PE=3 SV=1
Length=1883

 Score = 312 bits (800),  Expect = 1e-90, Method: Composition-based stats.
 Identities = 137/568 (24%), Positives = 212/568 (37%), Gaps = 113/568 (20%)

Query  2    ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAK----RHLETVDGAKVVVLVNRV  57
              R YQ EV+  A + +N I +L TGAGKT  A  + K    + L+       V LV +V
Sbjct  266  RARQYQLEVLEQA-KSRNTIAFLETGAGKTLIAVLLIKSVCDKMLKENKKMLAVFLVPKV  324

Query  58   HLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE  117
             LV Q                                    +L+ TA++L   L      
Sbjct  325  PLVYQ------------------------------------VLVMTAQILLNIL----RH  344

Query  118  EHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGT--GGA  175
              +++    L+++DECHH  K   Y+++MS++     +     P V G+TASP    G  
Sbjct  345  SIIKMDAIHLLILDECHHAVKKHPYSLVMSEFYHTTPKE--KRPAVFGMTASPVNLKGVT  402

Query  176  SKLDGAINHVLQLCANLDTW-CIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLK  234
            S+ D AI  +  L + LD+  C +  +    +L++H   P +      + +         
Sbjct  403  SQEDCAIK-IRNLESKLDSVVCTIKDRK---ELEKHVPMPLEVVVQYDKAATLWSLHEQI  458

Query  235  KLMDQI-------------------HDHLEMPELSRKFG-------------TQMYEQQV  262
            K M+                      D     EL   +G              Q      
Sbjct  459  KQMESTVEEAALSSSKRTKWQFMGARDAGSRDELRLVYGVSERTESDGAANLIQKLRAIN  518

Query  263  VKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILC  322
              L E       +  + +   L+    A    D       L  + D  H +      +  
Sbjct  519  YALGELGQWCAYKVAQSFLTALQNDERANYQVDVKFQESYLKKVVDLLHCQLTEGAAMKS  578

Query  323  AERRLLALFDDRKNE-------------------LAHLATHGPENPKLEMLEKILQRQFS  363
                +     ++ N                    +      G   P+++ L KIL + + 
Sbjct  579  ETSDVEMQNTEKHNTNDLEEGELPDSHGEHVDEVIGAAVADGKVTPRVQALIKILLK-YQ  637

Query  364  SSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEV  423
             +   R IIF     +A  L   L +   L    IR   LIG  N   +  M     Q+ 
Sbjct  638  HTEDFRAIIFVERVVTALVLPKVLAELPSLSF--IRCASLIGHNN---NQEMRACQMQDT  692

Query  424  IQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFVA  483
            I KF+DG + LLVATSVAEEGLDI  CNVV+R+ L    ++ +Q+RGRAR   S Y  + 
Sbjct  693  ISKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILML  752

Query  484  TEGSRELKRELIN--EALETLMEQAVAA  509
              G+   +  L N   + ETL ++A+  
Sbjct  753  ERGNISHETFLRNARNSEETLRKEAMER  780


>sp|Q9LXW7|DCL3_ARATH Endoribonuclease Dicer homolog 3 OS=Arabidopsis 
thaliana OX=3702 GN=DCL3 PE=1 SV=2
Length=1580

 Score = 310 bits (795),  Expect = 4e-90, Method: Composition-based stats.
 Identities = 115/566 (20%), Positives = 218/566 (39%), Gaps = 77/566 (14%)

Query  5    SYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRH-LETVDGAKVVVLVNRVHLVTQH  63
            SY+ +V   A + +NII  L TG  K+     + K       D   ++ L   V+LV Q 
Sbjct  46   SYELKVYEVA-KNRNIIAVLGTGIDKSEITKRLIKAMGSSDTDKRLIIFLAPTVNLVKQQ  104

Query  64   GEEFRRMLDGRWTVTTLSGDMGPRAG----FGHLARCHDLLICTAELLQMALTSPEEEEH  119
              E R +++ +  V    G  G        +      HD+L+ T ++L   L        
Sbjct  105  CCEIRALVNLK--VEEYFGAKGVDKWTSQRWDEEFSKHDVLVMTPQILLDVL----RSAF  158

Query  120  VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLD  179
            ++L +  L+++DECHHT  +  Y  +M ++       +   P++ GLTAS          
Sbjct  159  LKLEMVCLLIIDECHHTTGNHPYAKLMKEFYH----ESTSKPKIFGLTASAVIRKG----  210

Query  180  GAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQ-QPCKQYNLCHRRSQDPFGDLLKK--L  236
                             + SP N   Q+ E  +    K +N   R   + F   +K+  +
Sbjct  211  ----------------IVSSPSNYAAQVSELERLMDSKIFNPEEREGVEKFATTVKEGPI  254

Query  237  MDQIHDHLEMPELSRKFGTQ--MYEQQVVKLSEAAALAGLQEQRVYALHLRR----YNDA  290
            +        + EL  K  T    ++  + +L E    + L     +  + +R    Y + 
Sbjct  255  LYNPSPSCSL-ELKEKLETSHLKFDASLRRLQELGKDSFLNMDNKFETYQKRLSIDYREI  313

Query  291  LLIHDTVRAVDALAALQDFYHREHVTKTQ--------ILCAE--------------RRLL  328
            L   D +  + A  A +    +   TK +        ++C E              +   
Sbjct  314  LHCLDNLGLICAHLAAEVCLEKISDTKEESETYKECSMVCKEFLEDILSTIGVYLPQDDK  373

Query  329  ALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQ  388
            +L D ++N L+ + + G  +PKL+ L  +L   F      + +I      +A  +  +++
Sbjct  374  SLVDLQQNHLSAVIS-GHVSPKLKELFHLLD-SFRGDKQKQCLILVERIITAKVIERFVK  431

Query  389  QQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIP  448
            ++  L  +++   L +   N S +    Q+ Q E+   FQ G +NLL  T V EEG  +P
Sbjct  432  KEASLAYLNV---LYLTENNPSTNVS-AQKMQIEIPDLFQHGKVNLLFITDVVEEGFQVP  487

Query  449  HCNVVVRYGLLTNEISMVQARGRARADQSVYAFVATEGS---RELKRELINEALETLMEQ  505
             C+ +V + L     S  Q++  A+   S        G+   R+   +L+   +     +
Sbjct  488  DCSCMVCFDLPKTMCSYSQSQKHAKQSNSKSIMFLERGNPKQRDHLHDLMRREVLIQDPE  547

Query  506  AVAAVQKMDQAEYQAKIRDLQQAALT  531
            A          +    ++++    + 
Sbjct  548  APNLKSCPPPVKNGHGVKEIGSMVIP  573


>sp|Q69LX2|DCL2B_ORYSJ Endoribonuclease Dicer homolog 2b OS=Oryza 
sativa subsp. japonica OX=39947 GN=DCL2B PE=2 SV=2
Length=1377

 Score = 309 bits (792),  Expect = 5e-90, Method: Composition-based stats.
 Identities = 102/501 (20%), Positives = 191/501 (38%), Gaps = 35/501 (7%)

Query  4    RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHL----ETVDGAKVVVLVNRVHL  59
            R YQ E +  A+ G N + +L TG+GKT  A  + + +             V LV  V L
Sbjct  35   RWYQLEALERAVRG-NTLAFLETGSGKTLIAVMLLRAYAHRVRRPDSRRFAVFLVPTVVL  93

Query  60   VTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCH----DLLICTAELLQMALTSPE  115
            V Q      +  D    V    G+MG         R      ++L+ T ++L   L    
Sbjct  94   VGQQARVVEQHTDL--VVKQFCGEMGVDFWDAATWRSQLEDGEVLVMTPQILLDNL----  147

Query  116  EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRA--QPLPQVLGLTASPGTG  173
                  L   +L++ DECHH   +T Y  I  ++   +L  +   PLP++ G++AS    
Sbjct  148  RHSFFRLQDIALLIFDECHHARGNTPYACIFKEFYHPQLNSSASDPLPRIFGMSASLIYS  207

Query  174  GASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRR--SQDPFGD  231
                       + ++   +++            L E+      +         S +   +
Sbjct  208  KDLNQHNYSKQISEIENLMNSKVYTVDSESA--LSEYIPFASTKIVHFDDSNISSELHAN  265

Query  232  LLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDAL  291
            +L  L      H+E  +      +    +Q +       +  L    V+         + 
Sbjct  266  ILSCLNRLTKKHIEALDRKLHGSSLENAKQRISKLHRTFVYCLYNLGVWLAAKAAEVQSY  325

Query  292  LIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRK---NELAHLATHGPEN  348
              +      + L    + + R +  +        R L+ F        +    +  G   
Sbjct  326  EENSLSFWGETLDKNVEGFIRNYSEEVH------RELSCFLKNGHIGEKFPADSQDGILT  379

Query  349  PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN  408
            PK+  L + L  Q+      R I+F +   ++  L   L     +   +++      AG+
Sbjct  380  PKVHCLIRTLL-QYRHMQDLRCIVFVQRVITSIVLEPLLSSIHQMSGWNVK----HMAGS  434

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
                   ++++  E+++ F+ G +++++AT + EEGLD+P CN+V+R+       S +Q+
Sbjct  435  RPGLLSQSRKNHTEIVESFRKGKVHIIIATQILEEGLDVPSCNLVIRFDPSATVCSFIQS  494

Query  469  RGRARADQSVYAFVATEGSRE  489
            RGRAR + S Y  +   G  E
Sbjct  495  RGRARMENSDYLLLVGRGDVE  515


>sp|Q09884|DCR1_SCHPO Protein Dicer OS=Schizosaccharomyces pombe 
(strain 972 / ATCC 24843) OX=284812 GN=dcr1 PE=1 SV=1
Length=1374

 Score = 309 bits (791),  Expect = 7e-90, Method: Composition-based stats.
 Identities = 130/529 (25%), Positives = 230/529 (43%), Gaps = 53/529 (10%)

Query  3    LRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLE--------TVDGAKV-VVL  53
            LR YQ +V   A + +N ++ + TGAGKT  A  + K+ LE         ++  K+ V L
Sbjct  12   LRKYQQDVYNIASK-QNTLLVMRTGAGKTLLAVKLIKQKLEEQILIQESNLEHKKISVFL  70

Query  54   VNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFG---HLARCHDLLICTAELLQMA  110
            VN+V LV Q  E  R  L  +  V    G++          ++   +++++ TA+L  + 
Sbjct  71   VNKVPLVFQQAEYIRSQLPAK--VGMFYGELSIEMSEQLLTNIILKYNVIVITADLFYLF  128

Query  111  LTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKL----QRAQPLPQVLGL  166
            L        + +   +LI+ DECHH   +  Y  IM+ +         ++   LP++ G+
Sbjct  129  LA----RGFLSINDLNLIIFDECHHAIGNDAYARIMNDFYHRAKAVLSKKHFTLPRIFGM  184

Query  167  TASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQ  226
            TASP TG    L    + + Q     D+   +  +N   +L ++   P + Y +   +  
Sbjct  185  TASPFTGKKGNL---YHRLYQWEQLFDSKAHVVSEN---ELADYFCLPEESYVMYSNKLV  238

Query  227  DPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR  286
             P  D + K  ++     ++   + K          +   E   L  +     +    R 
Sbjct  239  VPPSDSIIKKCEETLQGCKLISRAVKTALAETIDMGLWFGEQVWLYLVD----FVETKRL  294

Query  287  YNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGP  346
               AL    +     A+  L+ F       K          + +FD              
Sbjct  295  KKKALGKQLSDDEELAIDRLKIFVEDWKNNKYSDNGPR---IPVFDST-----------D  340

Query  347  ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA  406
               K+  L ++L+  +  S+S R +IF   + +A +L L+++    L   +IRA   IG 
Sbjct  341  VTDKVFKLLELLKATYRKSDSVRTVIFVERKATAFTLSLFMKT---LNLPNIRAHSFIGH  397

Query  407  GNSSQST-HMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM  465
            G S Q    MT R Q++ + KF+ G  N+L+AT+VAEEG+D+P CN+V+R+ +       
Sbjct  398  GPSDQGEFSMTFRRQKDTLHKFKTGKYNVLIATAVAEEGIDVPSCNLVIRFNICRTVTQY  457

Query  466  VQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMD  514
            VQ+RGRARA  S +          +   +++E  E  ++ A++ +   +
Sbjct  458  VQSRGRARAMASKFLIFLNTEELLIHERILHE--EKNLKFALSELSNSN  504


>sp|Q10HL3|DCL2A_ORYSJ Endoribonuclease Dicer homolog 2a OS=Oryza 
sativa subsp. japonica OX=39947 GN=DCL2A PE=2 SV=1
Length=1410

 Score = 308 bits (789),  Expect = 1e-89, Method: Composition-based stats.
 Identities = 107/531 (20%), Positives = 201/531 (38%), Gaps = 44/531 (8%)

Query  4    RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHL----ETVDGAKVVVLVNRVHL  59
            R YQ E +  A+ G N + +L TG+GKT  A  + + +             V LV  V L
Sbjct  35   RWYQLEALERAVRG-NTLAFLETGSGKTLIAVMLLRAYAHRVRRPDSRRFAVFLVPTVVL  93

Query  60   VTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCH----DLLICTAELLQMALTSPE  115
            V Q      +  D    V    G+MG         R      ++L+ T ++L   L    
Sbjct  94   VGQQARVVEQHTDL--VVKQFCGEMGVDFWDAATWRSQLEDGEVLVMTPQILLDNL----  147

Query  116  EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRA--QPLPQVLGLTASPGTG  173
                  L   +L++ DECHH   +T Y  I  ++   +L  +   PLP++ G++AS    
Sbjct  148  RHSFFRLQDIALLIFDECHHARGNTPYACIFKEFYHPQLNSSASDPLPRIFGMSASLIYS  207

Query  174  GASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRR--SQDPFGD  231
                       + ++   +++            L E+      +         S +   +
Sbjct  208  KDLNPHNYSKQISEIENLMNSKVYTVDSESA--LSEYIPFASTKIVDFDDSNISSELHAN  265

Query  232  LLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDAL  291
            +L  L      H+E  +      +    +Q +       +  L    V+         + 
Sbjct  266  ILSCLNRLNKKHIEALDRKLHGSSLENAKQRISKLHHTFVYCLYNLGVWLAAKAAEVQSY  325

Query  292  LIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRK---NELAHLATHGPEN  348
              +      + L    + + R +  +        R L+ F        +    +  G   
Sbjct  326  EENSLSFWGETLDKNVEGFIRNYSEEVH------RELSCFLKNGHIGEKFPADSQDGILT  379

Query  349  PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN  408
            PK+  L + L  Q+      R I+F     ++  L   L     +   +++      AG+
Sbjct  380  PKVHCLIRTLL-QYRHMQDLRCIVFVERVITSIVLEHLLSSIHQMSGWNVK----HMAGS  434

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
                   ++++  E+++ F+ G +++++AT + EEGLD+P CN+V+R+       S +Q+
Sbjct  435  RPGLLSQSRKNHTEIVESFRKGKVHIIIATQILEEGLDVPSCNLVIRFDPSATVCSFIQS  494

Query  469  RGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQ  519
            RGRAR + S Y  +   G  E          +T  E+ +A+ Q M +   +
Sbjct  495  RGRARMENSDYLLLVGRGDVEA---------QTNAEKFLASGQIMREESLR  536


>sp|A2QX45|DCL22_ASPNC Dicer-like protein 2-2 OS=Aspergillus niger 
(strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) OX=425011 
GN=dcl2-2 PE=3 SV=2
Length=1362

 Score = 307 bits (787),  Expect = 2e-89, Method: Composition-based stats.
 Identities = 116/528 (22%), Positives = 216/528 (41%), Gaps = 54/528 (10%)

Query  1    MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK-VVVLVNRVHL  59
            + +R YQ E++  +L+ +N+I+ +PTG GKT+ A       ++  +  K V +L   V L
Sbjct  21   LRIREYQLEMLNESLK-RNLIVVMPTGTGKTQVAILRILADIDKGNSDKFVWLLCPTVAL  79

Query  60   VTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
              Q           ++    L      +A + +      + + T ++L  AL+       
Sbjct  80   SEQQY--------IQYATVFLPSGAEDKAIWDNALSGIKIAVSTYQVLYDALS----HGF  127

Query  120  VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRA-QPLPQVLGLTASPGTGGASKL  178
            V+L+  SL++ DE HH  KD V N IM  +   + Q   Q LP++LGLTASP     S L
Sbjct  128  VKLSQMSLLIFDEAHHCKKDHVANKIMQVHYHKQHQSGVQNLPKILGLTASPILSDLSSL  187

Query  179  DGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMD  238
            +        + +NL + C  +P+    QL + + +P     L       P   +   +++
Sbjct  188  EI-------VESNLGSIC-KTPRQYYAQLLQFTNRPLILPRL--PTYTIPNCSVKAPILE  237

Query  239  QIHDHLEMPELSRKFGTQMYEQQ--VVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDT  296
            ++   L   +          +Q   + +  + +  +  QE  ++A         +   ++
Sbjct  238  KLCGILSSEDEVPSSSKMKSKQLKHIRRFMQTSE-SINQELGIWAATEYMRKSIMHFKES  296

Query  297  VRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEK  356
            +R       + ++     +     L   +         +            +P  + L  
Sbjct  297  MRMGAEKTNISNYGKDFAMEILTRLGKLQDCSPAIQPEE-----------ISPMCQCLLD  345

Query  357  ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHM-  415
             L + +       G++F   R +  +L  WL +   L +        IG   +  S    
Sbjct  346  ELSKAYREGFC--GLVFVTQRATVLAL-KWLIENHPLTSHLFTCGTFIGMSTTQYSKTEL  402

Query  416  ----TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
                  R+Q E ++KF+ G+LNL++ T   EEG+D+P CN V+ +    +  S +Q RGR
Sbjct  403  GNLHDIRNQTETLEKFRQGSLNLIITTDALEEGIDVPACNTVLNFNCQLSLKSFIQRRGR  462

Query  472  ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQ  519
            AR + S +  +  + S           L+ L  + +  VQK+  AE +
Sbjct  463  ARRENSQFIIIMEDESGP-------RYLKRLEMEEIELVQKLQNAERR  503


>sp|I3XHK1|FANCM_ARATH DEAD-box ATP-dependent RNA helicase FANCM 
OS=Arabidopsis thaliana OX=3702 GN=FANCM PE=2 SV=1
Length=1344

 Score = 307 bits (785),  Expect = 4e-89, Method: Composition-based stats.
 Identities = 107/582 (18%), Positives = 213/582 (37%), Gaps = 40/582 (7%)

Query  1    MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV  60
            + LR YQ+ +   AL   N ++ LPTG GKT  AA V   +       K+V       LV
Sbjct  115  VPLRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVMYNYFRWFPQGKIVFAAPSRPLV  173

Query  61   TQHGEEFRRMLDGRWT-VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
             Q  E    ++         L+G   P +    L +   +   T ++L+  + S      
Sbjct  174  MQQIEACHNIVGIPQEWTIDLTGQTCP-SKRAFLWKSKRVFFVTPQVLEKDIQS----GT  228

Query  120  VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLD  179
                    +V+DE H    +  Y V++ + + + +Q      ++L LTA+PG+       
Sbjct  229  CLTNYLVCLVIDEAHRALGNYSYCVVVRELMAVPIQL-----RILALTATPGSK------  277

Query  180  GAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQ-QPCKQYNLCHRRSQDPFGDLLKKLMD  238
                 +  +  NL    +         +  +   +  +   +   +  D     L  ++ 
Sbjct  278  --TQAIQGIIDNLQISTLEYRNESDHDVCPYVHDRKLEVIEVPLGQDADDVSKRLFHVIR  335

Query  239  QIHDHLEMPELSRKFGTQ---MYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHD  295
                 L+   ++     Q    +E  + +     A         +      +   + ++ 
Sbjct  336  PYAVRLKNFGVNLNRDIQTLSPHEVLMARDKFRQAPLPGLPHVNHGDVESCFAALITLYH  395

Query  296  TVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLE  355
              + + +      +   E   K                 K  +    +HG  +PKL  + 
Sbjct  396  IRKLLSSHGIRPAYEMLEEKLKEGPFARLMSKNEDIRMTKLLMQQRLSHGAPSPKLSKML  455

Query  356  KILQRQF--SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQST  413
            +IL   F      + R IIF+  R S   ++  L     +    ++A   IG  +     
Sbjct  456  EILVDHFKVKDPKTSRVIIFSNFRGSVRDIMNALSNIGDM----VKATEFIGQSSGKTLK  511

Query  414  HMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-A  472
              +Q+ QQ V++KF+ G  N++VATS+ EEGLDI   ++V+ +    + + M+Q  GR  
Sbjct  512  GQSQKIQQAVLEKFRAGGFNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTG  571

Query  473  RADQSVYAFVATEGSRE---LKRELINEALETLMEQA------VAAVQKMDQAEYQAKIR  523
            R +      +A EGS +   ++++    A++  M              +M    Y+ +++
Sbjct  572  RKNNGRVVVLACEGSEKNSYMRKQASGRAIKKHMRNGGTNSFNFHPSPRMIPHVYKPEVQ  631

Query  524  DLQQAALTKRAAQAAQRENQRQQFPVEHVQLLCINCMVAVGH  565
             ++ +           +E    + P    +L      +   +
Sbjct  632  HVEFSIKQFVPRGKKLQEEYATETPAFQKKLTPAETHMLAKY  673


>sp|Q75AA7|MPH1_EREGS ATP-dependent DNA helicase MPH1 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=MPH1 PE=3 SV=2
Length=1077

 Score = 302 bits (773),  Expect = 1e-88, Method: Composition-based stats.
 Identities = 111/597 (19%), Positives = 210/597 (35%), Gaps = 103/597 (17%)

Query  2    ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVT  61
            E+R YQ+ ++  AL  +N++  +PTG GKT  A+ V   +     G K++       LV 
Sbjct  91   EVREYQFNIVHRAL-FENVLCAIPTGMGKTFIASTVMLNYYRWTVGTKIIFTAPTRPLVA  149

Query  62   QHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVE  121
            Q  +    +    +  T +  D   R     +     +   T ++++  L    +   + 
Sbjct  150  QQIKACLGITGIPYNDTAILLDKS-RKHREQIWSEKRVFFATPQVVENDL----KRGALN  204

Query  122  LTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGA  181
                 L+V+DE H       Y  +        + R     +VL LTA+P T         
Sbjct  205  PKDVVLLVIDEAHRARGSYAYVELTKF-----IDRFNTSYRVLALTATPAT--------D  251

Query  182  INHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQ-----DPFGDLLKKL  236
            +  V ++  NL    I         +  + ++   +  +     +     +  G  +  +
Sbjct  252  LEGVQEVVDNLQISKIELRTEESEDIVRYMKRRDTEEVIVPLIPEIEDIIEQLGIAITPV  311

Query  237  MDQ-----IHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDAL  291
            + +     ++D  E   ++     Q  ++    L+ ++   G++ +  + L L  +   +
Sbjct  312  LKEAVQLGLYDDCEPVNINAFIAMQQSQKI---LANSSIPEGVKWKNYFILQLLCHVGHM  368

Query  292  LIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALF-----DDRKNELAHLATHGP  346
            L    +  +       D  +RE  TK  I  +  +  A F          +     T  P
Sbjct  369  LKRLKIYGIQTFYTYFDNKYREFTTKYGIGKSTNKTAASFYYSSILKNITKTCQAYTANP  428

Query  347  E---NPKLEMLEKILQRQFSSS-NSPRGIIFTRTRQSAHSLL------------------  384
                + KL  +   L   F+S+ +  R IIFT  R+SA  L+                  
Sbjct  429  SFLGHGKLYRVRDELSTFFASAGDDSRVIIFTELRESALELVKCVDNMNDRFIRPHIFIG  488

Query  385  -----------LWLQQQQGLQTVDI--------------------------RAQLLIGAG  407
                        +L++        +                          R     G+ 
Sbjct  489  QAKGKESFDDGEYLRKHAPKGRKKVDRIRRLEEEKRLADEKLRKKEEEKLARTARRTGSS  548

Query  408  NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
              +Q + MTQ+ Q+EVI  F+ G  N+LV TS+ EEGLDI   ++++ Y   ++ I  +Q
Sbjct  549  EEAQISGMTQKQQKEVISLFKKGDYNVLVCTSIGEEGLDIGEVDMIICYDTTSSPIKNIQ  608

Query  468  ARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD  524
              GR    +     +    +   K        E  ME      + + +     K+ D
Sbjct  609  RMGRTGRKRDGRIVLLLSDNEPRK-------FEQAMEDYAQLQRLIGEESLNYKVTD  658


>sp|P34529|DCR1_CAEEL Endoribonuclease dcr-1 OS=Caenorhabditis 
elegans OX=6239 GN=dcr-1 PE=1 SV=3
Length=1910

 Score = 304 bits (777),  Expect = 1e-87, Method: Composition-based stats.
 Identities = 121/581 (21%), Positives = 229/581 (39%), Gaps = 65/581 (11%)

Query  1    MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETV------DGAKVVVLV  54
               R YQ E++  A + KN I+ L TG+GKT  A  + K +   +       G +   +V
Sbjct  11   FNPRDYQVELLDKATK-KNTIVQLGTGSGKTFIAVLLLKEYGVQLFAPLDQGGKRAFFVV  69

Query  55   NRVHLVTQHG---EEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMAL  111
             +V+LV Q     E       G+    T SG    +       + H +++ TA+ L   +
Sbjct  70   EKVNLVEQQAIHIEVHTSFKVGQVHGQTSSGLWDSKEQCDQFMKRHHVVVITAQCLLDLI  129

Query  112  TSPEEEEHVELTVFSLIVVDECHHTHK-DTVYNVIMSQYLELKLQRAQPLPQVLGLTASP  170
                   ++++    +++ DECHH       Y  IM  Y    L++ +P+P+VLGLTAS 
Sbjct  130  ----RHAYLKIEDMCVLIFDECHHALGSQHPYRSIMVDY--KLLKKDKPVPRVLGLTASL  183

Query  171  GTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFG  230
                 +  +  +  + +L + +D+  I +  +    L ++  +P +   +C        G
Sbjct  184  IKAKVAP-EKLMEQLKKLESAMDSV-IETASD-LVSLSKYGAKPYEVVIICKDFEIGCLG  240

Query  231  ----DLLKKLMDQIHDHLEMP-ELSRKFGTQMYEQQVVKL-------SEAAALAGLQEQR  278
                D + ++ D+    +    E                L        +    A  +  +
Sbjct  241  IPNFDTVIEIFDETVAFVNTTTEFHPDLDLDPRRPIKDSLKTTRAVFRQLGPWAAWRTAQ  300

Query  279  VYALHLRRYNDALLIHDTV---------RAVDALAALQDFYHREHVTKTQILCAERRLLA  329
            V+   L +   + ++ D             +     L+    +    +       +R++ 
Sbjct  301  VWEKELGKIIKSQVLPDKTLRFLNMAKTSMITIKRLLEPEMKKIKSIEALRPYVPQRVIR  360

Query  330  LFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQ  389
            LF+        L T  PE  K  M       +   +     IIF   R  A+SLLL ++ 
Sbjct  361  LFEI-------LETFNPEFQKERM-------KLEKAEHLSAIIFVDQRYIAYSLLLMMRH  406

Query  390  QQGLQ--TVDIRAQLLIGAGNSSQSTHMTQ---RDQQEVIQKFQDGTLNLLVATSVAEEG  444
             +  +     +    ++GA   + ++  +Q   + Q EV+++F    +N L+ATSV EEG
Sbjct  407  IKSWEPKFKFVNPDYVVGASGRNLASSDSQGLHKRQTEVLRRFHRNEINCLIATSVLEEG  466

Query  445  LDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFVATEGS-RELKRELIN-EALETL  502
            +D+  CN+V+++    +  S VQ++GRAR   S Y     E        +L + + +E +
Sbjct  467  VDVKQCNLVIKFDRPLDMRSYVQSKGRARRAGSRYVITVEEKDTAACDSDLKDFQQIEKI  526

Query  503  M---EQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR  540
            +    + V    + D   ++    D Q          A  +
Sbjct  527  LLSRHRTVNNPIEDDSDRFEEFDVDSQMEPYVVEKTGATLK  567


>sp|A7TSV4|MPH1_VANPO ATP-dependent DNA helicase MPH1 OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=MPH1 PE=3 SV=1
Length=1012

 Score = 289 bits (740),  Expect = 3e-84, Method: Composition-based stats.
 Identities = 108/596 (18%), Positives = 207/596 (35%), Gaps = 107/596 (18%)

Query  1    MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV  60
             E+R YQ+ ++  +L  +N +  +PTG GKT  A+ V           K++       LV
Sbjct  85   FEVREYQFNIVQKSLY-QNTLCAIPTGMGKTFIASTVMLNFFRWSKNGKIIFTAPTRPLV  143

Query  61   TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
             Q  +    +         +  D   R     +     +   T ++++  L    +   +
Sbjct  144  AQQIKACLGITGIPHDQAAILLDKS-RKNREDIWTQKRVFFTTPQVIENDL----KRGVL  198

Query  121  ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG  180
                   +V DE H       Y  ++       + R     ++L LTA+PGT        
Sbjct  199  NPKDIICLVFDEAHRATGSYAYTNVVKF-----IDRFNSSYRILALTATPGT--------  245

Query  181  AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQ-----DPFGDLLKK  235
             I  V ++  NL+   I         +  + ++  K+       ++     +  G  +K 
Sbjct  246  DIASVQEVVNNLNISNIEIRTEESMDIIRYMKKRYKEKIEIGLTTEIEMIIEQLGIAVKP  305

Query  236  LMDQ-----IHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDA  290
            ++ Q     I+D     +++     Q  +Q +   +      G++ +  + L L  +   
Sbjct  306  VLQQAVELGIYDECHPSQINSFVAMQKSQQII---ANPTIAEGIKWRNFFILQLLNHVGQ  362

Query  291  LLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPE---  347
            +L    +  + +          E  TK  +  +  ++ A F      L  L  +      
Sbjct  363  MLKRIKIYGIRSFYGYFRNKFSEFTTKYNMGKSTNKIAASFYYHPI-LKILMKNCDVYTS  421

Query  348  ------NPKLEMLEKILQRQFSSSN-SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRA  400
                  + KL+ +   L   F +S    R IIFT  R+SA  ++  +     + +  IR 
Sbjct  422  NSSFIGHDKLQKIINELSDFFLNSRLDSRVIIFTELRESALEIVKTIDN---MGSSSIRP  478

Query  401  QLLIGAGNSSQS--------------------------------THMTQRDQQ-------  421
             + IG     ++                                +   Q++Q+       
Sbjct  479  HIFIGQARGKENFDDEGFIRKNKPKGRKKADRLKRLEEDKQKQLSKAKQKEQEKVERSSR  538

Query  422  -------------------EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE  462
                               EVI KF++G  N+LV TS+ EEGLDI   ++++ +    + 
Sbjct  539  RTGSSEEAQISGMNQKQQKEVISKFKNGDYNVLVCTSIGEEGLDIGEVDMIICFDTTGSP  598

Query  463  ISMVQARGRARADQSVYAFVATEGSRELKRELINE---ALETLMEQAVAAVQKMDQ  515
            I  +Q  GR    +     +   G+   K E   E    L+ L+ Q     +K D+
Sbjct  599  IKNIQRMGRTGRKRDGKILLLFSGNESRKFEKAMEDYYDLQRLIGQNFVEYKKSDR  654


>sp|Q6CQX2|MPH1_KLULA ATP-dependent DNA helicase MPH1 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 
1267 / NRRL Y-1140 / WM37) OX=284590 GN=MPH1 PE=3 SV=2
Length=1002

 Score = 289 bits (738),  Expect = 4e-84, Method: Composition-based stats.
 Identities = 105/578 (18%), Positives = 207/578 (36%), Gaps = 100/578 (17%)

Query  2    ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVT  61
            E+R YQ++++  AL  +N++  +PTG GKT  A+ V   +      +K++       LV 
Sbjct  100  EVRQYQYDIVRCAL-FENVLCAIPTGTGKTFIASTVMLNYYRWTKSSKIIFTAPTRPLVA  158

Query  62   QHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVE  121
            Q  +    +    ++ T +  D   R     + +   +   T ++++  L    +   + 
Sbjct  159  QQIKACLGITGIPYSDTAILLDKS-RKNREEIWQQKRVFFTTPQVVENDL----KRGVLN  213

Query  122  LTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGA  181
                 L+V+DE H    +  Y  +        + R     ++L LTA+P           
Sbjct  214  PKDVVLLVIDEAHRARGNYAYVELTKF-----IDRFNTSYRLLALTATP--------AAD  260

Query  182  INHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQ-----YNLCHRRSQDPFGDLLKKL  236
            +  V ++  NL    I         +  +  +  ++              +  G  +  +
Sbjct  261  LEGVQEVVNNLHISKIELRTEDSLDVARYMMRRDREMIEIGLIPEIEEVVEQIGIAIAPV  320

Query  237  MDQ-----IHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDAL  291
            + +     I++  E  +++     Q  ++ ++     +   GL+ +  + L L      +
Sbjct  321  LQEAIQLGIYESCEPHQINAFVAMQQSQKIIL---NPSIPEGLKWKNFFILQLLSQVGHM  377

Query  292  LIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALF----------DDRKNELAHL  341
                 +  + A        + E  TK  +  +  +  A F          D  K  L   
Sbjct  378  YRRLRIYGLRAFYNYFQNKYTEFTTKYSMKKSTNKTAANFFYSPILKTVIDKCKRRLEEP  437

Query  342  ATHGPENPKLEMLEKILQRQFSSS-NSPRGIIFTRTRQSAHSLL--------------LW  386
              +  E  KLE L   L   F+ + +  R IIFT  R+SA  ++              ++
Sbjct  438  EFYSHE--KLEYLNNELADFFTMAPSDSRAIIFTELRESALEIVKSIDILNDGALRPHIF  495

Query  387  LQQQQGLQTVD-----------------------------------------IRAQLLIG  405
            + Q +G +  D                                          R     G
Sbjct  496  IGQAKGKEHFDEETYIRKNKPKGRTKAARLRRIEEENRVEEEKKRQKEQAKLERTGRRTG  555

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM  465
            +   +Q + M Q+ Q++VI  F+ G  N+LV TS+ EEGLDI   ++++ +   ++ I  
Sbjct  556  SSEEAQLSGMNQKQQKKVISDFKKGIYNVLVCTSIGEEGLDIGEVDLIICFDSTSSPIKN  615

Query  466  VQARGRARADQSVYAFVATEGSRELKRELINEALETLM  503
            +Q  GR    +     +   G+ + K E      E L 
Sbjct  616  IQRMGRTGRKRDGRIVLLFSGNEKFKFEQAMNDYENLQ  653


>sp|Q58900|Y1505_METJA Putative ATP-dependent RNA helicase MJ1505 
OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 
2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ1505 
PE=3 SV=2
Length=778

 Score = 272 bits (694),  Expect = 2e-79, Method: Composition-based stats.
 Identities = 112/485 (23%), Positives = 213/485 (44%), Gaps = 39/485 (8%)

Query  1    MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV  60
            +E R YQ  +   AL+ K  +  L TG GKT  A  V    L   D  KV++L     LV
Sbjct  13   LEARLYQQIIAANALKKK-TLCVLSTGLGKTAIAILVIAGILTKKD-GKVLILAPSRPLV  70

Query  61   TQHGEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
             QH    +++L+     +  L+G + P+     L +   + I T ++++  + +      
Sbjct  71   EQHYNRLKQVLNIDEDKIIALTGKIQPKK-RAELYKKGKIFIATPQVIENDIIA----GR  125

Query  120  VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLD  179
            + +  F L++ DE HHT  D  Y  +  ++ +           +LGLTASPG+       
Sbjct  126  INVDEFILLIADEAHHTTGDHAYAFVAKKFKD--------KCHILGLTASPGS-------  170

Query  180  GAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQ  239
              I+ V+++C NL    +         ++ +  +   +         + F   LK + + 
Sbjct  171  -DIDKVMEICENLGIEHVEVRTEDDEDVKPYIAK--VKLIPIRIDLPNEFKRALKLINEA  227

Query  240  IHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRA  299
            + + L++ + +    +     +   +     L    E+  Y L ++  ++AL +   + A
Sbjct  228  LKERLKILKDAGVINSIADVTKTELIELNNKLFSYDEEVKYEL-IKVCSEALKL---MHA  283

Query  300  VDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNE-LAHLATHGPENPKLEMLEKIL  358
             + L +        ++ K  +   +     + D++  E +  L     E+PKL  +  ++
Sbjct  284  KELLESQGKSVFLNYINKLSMQRTKSAKSIVNDEKVREAVNLLMKSDVEHPKLGKVVDMV  343

Query  359  QRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQR  418
            +     +   R IIF + R +   ++  L Q        I+A   IG  N  +   M+Q+
Sbjct  344  KNILEKNKDERIIIFAQYRDTVEKIVNLLTQN------GIKAIRFIGQANK-EGKGMSQK  396

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSV  478
            +Q E I++F+    ++LV+TSV+EEG+DIP  N ++ Y  + +EI  +Q RGRA   +  
Sbjct  397  EQIEAIERFKK-EGSVLVSTSVSEEGIDIPSVNYIIFYEPVPSEIRFIQRRGRAMRGEGG  455

Query  479  YAFVA  483
              +V 
Sbjct  456  KVYVL  460


>sp|Q6FPQ3|MPH1_CANGA ATP-dependent DNA helicase MPH1 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=MPH1 PE=3 SV=1
Length=1052

 Score = 275 bits (703),  Expect = 6e-79, Method: Composition-based stats.
 Identities = 103/596 (17%), Positives = 210/596 (35%), Gaps = 107/596 (18%)

Query  1    MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV  60
             E+R YQ++++   L  +NI+  +PTG GKT  A+ V          AK++       LV
Sbjct  80   FEVRDYQFDIVRKGL-LQNILCAIPTGMGKTFIASTVMLNFFRWTKTAKIIFTAPTRPLV  138

Query  61   TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
             Q  +    +       T +  D   R     +     +   T ++++  L    +   +
Sbjct  139  AQQIKACLGITGIPHDQTAILLDKT-RKNREEIWANKRVFFTTPQVVENDL----KRGVL  193

Query  121  ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG  180
                   +V+DE H       Y  ++       + R     ++L LTA+P T        
Sbjct  194  NPKDIVCLVIDEAHRATGSYAYANLVKF-----INRFNSSYRLLALTATPAT--------  240

Query  181  AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI  240
             I  V ++  NL+   I         + ++ ++  K  +  + ++     +++++L   I
Sbjct  241  DIEGVQEVVNNLNISKIEIRTEESMDIVKYMKKKIK--DRVNIQTTVEIENIVEQLGIAI  298

Query  241  HDHLEMPELSRKFGT---------QMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDAL  291
               L        + +         +  ++    +   +   G++ +  + L L  +   +
Sbjct  299  LPVLNQAVELGIYESCPPSAINAFKAMQKSQAIIMNPSIPEGIKWRNYFILQLLNHVGQM  358

Query  292  LIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALF----------DDRKNELAHL  341
            L    +  +    +      +E  TK  +  +  ++ A F           + + ++   
Sbjct  359  LKRIKIYGIRTFFSYFQNKVKEFTTKYDLGKSTNKIAAGFYYHPMIQAITKECEEKIKDP  418

Query  342  ATHGPENPKLEMLEKILQRQFSSSN-SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRA  400
               G  + KLE L   L + F  +    R IIFT  R+SA  ++  +     ++  +IR 
Sbjct  419  NFLG--HGKLEHLRDELTQFFYENPFESRVIIFTELRESALEIVKCID---SMENSEIRP  473

Query  401  QLLIGAGNSSQSTH---------------------------MTQRDQQEVIQ--------  425
             + IG     +                              M +  +Q  +Q        
Sbjct  474  HIFIGQAKGKEGFDEVKFVRKHGPKGRKKSDREKRLEEERRMDEEKKQAALQEKLERTSR  533

Query  426  -----------------------KFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE  462
                                   KF+ G  N+LV TS+ EEGLDI   ++++ Y   ++ 
Sbjct  534  RTGSSEEAQLSGMNQKQQKEVIKKFKSGLYNVLVCTSIGEEGLDIGEVDLIICYDTTSSP  593

Query  463  ISMVQARGR-ARADQSVYAFVATEGSRELKRELINEA--LETLMEQAVAAVQKMDQ  515
            I  +Q  GR  R        + +        + +N+   L+ L+ Q +   +K D+
Sbjct  594  IKNIQRMGRTGRKRDGRIVLMFSSNEASKFDQSMNDYYNLQKLISQHLVQYRKSDR  649


>sp|A6ZVS0|MPH1_YEAS7 ATP-dependent DNA helicase MPH1 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=MPH1 PE=3 SV=1
Length=993

 Score = 274 bits (700),  Expect = 8e-79, Method: Composition-based stats.
 Identities = 105/597 (18%), Positives = 209/597 (35%), Gaps = 98/597 (16%)

Query  2    ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVT  61
            E+R YQ+ ++  +L  +N +  +PTG GKT  A+ V   +      AK++       LV 
Sbjct  86   EVRDYQYTIVHKSL-FQNTLCAIPTGMGKTFIASTVMLNYFRWTKKAKIIFTAPTRPLVA  144

Query  62   QHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVE  121
            Q  +    +       T +  D   R     +     +   T ++++  L    +   ++
Sbjct  145  QQIKACLGITGIPSDQTAILLDKS-RKNREEIWANKRVFFATPQVVENDL----KRGVLD  199

Query  122  LTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGA  181
                  +V+DE H       Y  ++       + R     ++L LTA+P +         
Sbjct  200  PKDIVCLVIDEAHRATGSYAYTNVVKF-----IDRFNSSYRLLALTATPAS--------D  246

Query  182  INHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQ-----DPFGDLLKKL  236
            +  V ++  NLD   I         + ++ ++  K+        +     +  G  +K +
Sbjct  247  LEGVQEVVNNLDISKIEIRTEESMDIVKYMKKRKKEKIEVPLLLEIEDIIEQLGIAVKPV  306

Query  237  MDQI--HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIH  294
            + Q       E  + S+    +  +Q    ++      G++ +  + L L      +L  
Sbjct  307  LQQAIELGIYEECDPSQINAFKAMQQSQKIIANPTIPEGIKWRNFFILQLLNNVGQMLKR  366

Query  295  DTVRAVDALAALQDFYHREHVTKTQILCAERRLLALF-------DDRKNELAHLATHGPE  347
              +  +            E  TK  +  +  ++ A F       + +     +L+     
Sbjct  367  LKIYGIRTFFNYFQNKCTEFTTKYNLKKSTNKIAAEFYYHPILKNIKNQCENYLSDPKFV  426

Query  348  -NPKLEMLEKILQRQF-SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
             + KL+ +   L   F    +  R IIFT  R+SA  ++ ++     +    IR  + IG
Sbjct  427  GHGKLQCVRDELMEFFQKRGSDSRVIIFTELRESALEIVKFID---SVANDQIRPHIFIG  483

Query  406  AGNSSQSTH------------------MTQRDQQ--------------------------  421
               + +                     + +++Q+                          
Sbjct  484  QARAKEGFDEVKYTRKHAPKGRKKVERLHRQEQEKFLEAERTKRAANDKLERSARRTGSS  543

Query  422  --------------EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
                          EVI  F+ G  N+LV TS+ EEGLDI   ++++ Y   ++ I  +Q
Sbjct  544  EEAQISGMNQKMQKEVIHNFKKGEYNVLVCTSIGEEGLDIGEVDLIICYDTTSSPIKNIQ  603

Query  468  ARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD  524
              GR    +     +    +   K E   E   TL  QA+ + Q +D  +    I +
Sbjct  604  RMGRTGRKRDGKIVLLFSSNESYKFERAMEDYSTL--QALISKQCIDYKKSDRIIPE  658


>sp|P40562|MPH1_YEAST ATP-dependent DNA helicase MPH1 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=MPH1 
PE=1 SV=1
Length=993

 Score = 270 bits (691),  Expect = 1e-77, Method: Composition-based stats.
 Identities = 103/599 (17%), Positives = 209/599 (35%), Gaps = 102/599 (17%)

Query  2    ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVT  61
            E+R YQ+ ++  +L  +N +  +PTG GKT  A+ V   +      AK++       LV 
Sbjct  86   EVRDYQYTIVHKSL-FQNTLCAIPTGMGKTFIASTVMLNYFRWTKKAKIIFTAPTRPLVA  144

Query  62   QHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVE  121
            Q  +    +       T +  D   R     +     +   T ++++  L    +   ++
Sbjct  145  QQIKACLGITGIPSDQTAILLDKS-RKNREEIWANKRVFFATPQVVENDL----KRGVLD  199

Query  122  LTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGA  181
                  +V+DE H     + Y  ++       + R     ++L LTA+P +         
Sbjct  200  PKDIVCLVIDEAHRATGSSAYTNVVKF-----IDRFNSSYRLLALTATPAS--------D  246

Query  182  INHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIH  241
            +  V ++  NLD   I         + ++ ++  K+        +    D++++L   + 
Sbjct  247  LEGVQEVVNNLDISKIEIRTEESMDIVKYMKKRKKEKIEVPLLLE--IEDIIEQLGMAVK  304

Query  242  DHLEMPELSRKFGT---------QMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALL  292
              L+       +           +  +Q    ++      G++ +  + L L      +L
Sbjct  305  PVLQQAIELGIYEECDPSQINAFKAMQQSQKIIANPTIPEGIKWRNFFILQLLNNVGQML  364

Query  293  IHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALF-------DDRKNELAHLATHG  345
                +  +            E  TK  +  +  ++ A F       + +     +L+   
Sbjct  365  KRLKIYGIRTFFNYFQNKCTEFTTKYNLKKSTNKIAAEFYYHPILKNIKNQCENYLSDPK  424

Query  346  PE-NPKLEMLEKILQRQF-SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLL  403
               + KL+ +   L   F    +  R IIFT  R+SA  ++ ++     +    IR  + 
Sbjct  425  FVGHGKLQCVRDELMDFFQKRGSDSRVIIFTELRESALEIVKFID---SVADDQIRPHIF  481

Query  404  IGAGNSSQSTH------------------MTQRDQQ------------------------  421
            IG   + +                     + +++Q+                        
Sbjct  482  IGQARAKEGFDEVKYTRKHAPKGRKKVERLHRQEQEKFLEAERTKRAANDKLERSARRTG  541

Query  422  ----------------EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM  465
                            EVI  F+ G  N+LV TS+ EEGLDI   ++++ Y   ++ I  
Sbjct  542  SSEEAQISGMNQKMQKEVIHNFKKGEYNVLVCTSIGEEGLDIGEVDLIICYDTTSSPIKN  601

Query  466  VQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD  524
            +Q  GR    +     +    +   K E   E   TL  QA+ + Q +D  +    I +
Sbjct  602  IQRMGRTGRKRDGKIVLLFSSNESYKFERAMEDYSTL--QALISKQCIDYKKSDRIIPE  658


>sp|A1ZAW0|DCR2_DROME Endoribonuclease Dcr-2 OS=Drosophila melanogaster 
OX=7227 GN=Dcr-2 PE=1 SV=1
Length=1722

 Score = 260 bits (665),  Expect = 6e-73, Method: Composition-based stats.
 Identities = 109/569 (19%), Positives = 224/569 (39%), Gaps = 59/569 (10%)

Query  1    MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG------AKVVVLV  54
            ++ R YQ  ++   L   N I++LPTG+GKT  A  V KR  +  D        + + + 
Sbjct  6    IKPRGYQLRLVD-HLTKSNGIVYLPTGSGKTFVAILVLKRFSQDFDKPIESGGKRALFMC  64

Query  55   NRVHLVTQHGEEFRRMLDGRWTVTTLSGDMG----PRAGFGHLARCHDLLICTAELLQMA  110
            N V L  Q     RR  +  + V    G+ G     R  +    + + +L+ TA++    
Sbjct  65   NTVELARQQAMAVRRCTN--FKVGFYVGEQGVDDWTRGMWSDEIKKNQVLVGTAQVFLDM  122

Query  111  LTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASP  170
            +T    + +V L+  S++++DECHH      +   M  +    +     LP+V+GLT   
Sbjct  123  VT----QTYVALSSLSVVIIDECHHGTGHHPFREFMRLF---TIANQTKLPRVVGLTGVL  175

Query  171  GTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQ-YNLCHRRSQDPF  229
              G            L++    +    +S       +  ++ +P +   +  H+      
Sbjct  176  IKGNEITNVATKLKELEITYRGNI-ITVSDTKEMENVMLYATKPTEVMVSFPHQEQVLTV  234

Query  230  GDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND  289
              L+   +++ +  L++  +          + +  L + +  + +++  ++   L +  +
Sbjct  235  TRLISAEIEKFYVSLDLMNIG--VQPIRRSKSLQCLRDPSKKSFVKQ--LFNDFLYQMKE  290

Query  290  ALLIHDTVRAVDALAALQDFYHREHVTKTQILCAE------RRLLALFDDRKNELAHLAT  343
              +   ++ A+ +L    D   R+  T +  L          ++  L   +  ++ +   
Sbjct  291  YGIYAASI-AIISLIVEFDIKRRQAETLSVKLMHRTALTLCEKIRHLLVQKLQDMTYDDD  349

Query  344  HGPEN----------PKLEMLEKILQRQF--SSSNSPRGIIFTRTRQSAH----SLLLWL  387
                N          PK++     L+  F          ++F   R +       LL ++
Sbjct  350  DDNVNTEEVIMNFSTPKVQRFLMSLKVSFADKDPKDICCLVFVERRYTCKCIYGLLLNYI  409

Query  388  QQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGL  445
            Q    L+ V +  Q ++G  N S      + ++ Q+  IQ+F+DG  NL++ +SV EEG+
Sbjct  410  QSTPELRNV-LTPQFMVGRNNISPDFESVLERKWQKSAIQQFRDGNANLMICSSVLEEGI  468

Query  446  DIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFVATEGSRELK-------RELINEA  498
            D+  CN V     +      VQ++GRAR  ++ +     +  RE         R+  N+ 
Sbjct  469  DVQACNHVFILDPVKTFNMYVQSKGRARTTEAKFVLFTADKEREKTIQQIYQYRKAHNDI  528

Query  499  LETLMEQAVAAVQKMDQAEYQAKIRDLQQ  527
             E L ++ +   +            D+  
Sbjct  529  AEYLKDRVLEKTEPELYEIKGHFQDDIDP  557


>sp|Q7MGP7|RHLB_VIBVY ATP-dependent RNA helicase RhlB OS=Vibrio 
vulnificus (strain YJ016) OX=196600 GN=rhlB PE=3 SV=1
Length=435

 Score = 182 bits (462),  Expect = 1e-49, Method: Composition-based stats.
 Identities = 74/333 (22%), Positives = 123/333 (37%), Gaps = 60/333 (18%)

Query  252  KFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR-----YNDALLIHDTVRAVDALAAL  306
             +G + Y++Q+ KL     +      R+   + +R        A+++ +  R  D L  +
Sbjct  118  AYGGESYDKQLAKLQGGVDVLIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFD-LGFI  176

Query  307  QDFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPEN----PKLEMLEKIL  358
            +D          ++   + RL  LF      R  ELA    H PE+    P+ +   +I 
Sbjct  177  KDIRFLFR----RMPAPQERLNMLFSATLSYRVQELAFEHMHNPEHVVVEPEQKTGHRIQ  232

Query  359  QRQFSSSNSP---------------RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLL  403
            +  F  SN                 R IIF  T+    S+         L     R  LL
Sbjct  233  EELFYPSNEDKMALLQTLIEEEWPDRAIIFANTKYKCESIW------AHLAADGHRVGLL  286

Query  404  IGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI  463
             G         + Q+ +++++++F  G+++LLVAT VA  GL IP    V  Y L  +  
Sbjct  287  TG--------DVPQKKREKILEQFTQGSVDLLVATDVAARGLHIPQVTHVFNYDLPDDCE  338

Query  464  SMVQAR---GRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA  520
              V      GRA A     +F   + +  L       A+E  +E  +     +   +  A
Sbjct  339  DYVHRIGRTGRAGASGHSISFACEDYAINLP------AIEEYIEHTIP----VSDYDSSA  388

Query  521  KIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQ  553
             I+DL     T  A    +R N       +   
Sbjct  389  LIQDLPAPVRTPSARNQQRRTNTGGARSGDRKS  421


 Score = 37.9 bits (86),  Expect = 0.33, Method: Composition-based stats.
 Identities = 21/120 (18%), Positives = 36/120 (30%), Gaps = 15/120 (13%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRML--DGRW  75
            TG GKT A       HL              + +++     L  Q   +   ++   G  
Sbjct  55   TGTGKTLAFLTATFNHLLTTHAHEGRQPTQPRAIIMAPTRELAIQIYNDAEPLIASTGIK  114

Query  76   TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH  135
                  G+   +     L    D+LI T   +        ++    L     +V+DE   
Sbjct  115  AALAYGGESYDKQL-AKLQGGVDVLIGTTGRIIDFY----KQRVFNLNNIQAVVLDEADR  169


>sp|Q87KH5|RHLB_VIBPA ATP-dependent RNA helicase RhlB OS=Vibrio 
parahaemolyticus serotype O3:K6 (strain RIMD 2210633) OX=223926 
GN=rhlB PE=3 SV=1
Length=437

 Score = 182 bits (462),  Expect = 1e-49, Method: Composition-based stats.
 Identities = 74/351 (21%), Positives = 129/351 (37%), Gaps = 62/351 (18%)

Query  228  PFGDLLKKLMDQIHDHLEMPELS--RKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR  285
            P  +L  ++ +     +    L     +G + Y++Q+ KL +   +      R+   + +
Sbjct  92   PTRELAIQIFNDAEPLIASTGLKAALAYGGESYDKQLAKLQDGVDILIGTTGRIIDFYKQ  151

Query  286  R-----YNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKN  336
            R        A+++ +  R  D L  ++D          ++   + RL  LF      R  
Sbjct  152  RVFNLNNIQAVVLDEADRMFD-LGFIKDIRFLFR----RMPEPKERLNMLFSATLSYRVQ  206

Query  337  ELAHLATHGPEN----PKLEMLEKILQRQFSSSNSP---------------RGIIFTRTR  377
            ELA    H PE+    P  +   +I +  F  SN                 R I+F  T+
Sbjct  207  ELAFEHMHNPEHVVVEPAQKTGHRIQEELFYPSNEDKMALLQTLIEEEWPDRAIVFANTK  266

Query  378  QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA  437
                S+         L     R  LL G         + Q+ +++++++F  G +++LVA
Sbjct  267  HKCESVW------GHLAADGHRVGLLTG--------DVPQKKREKILEQFTKGDVDILVA  312

Query  438  TSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR---GRARADQSVYAFVATEGSRELKREL  494
            T VA  GL IP    V  Y L  +    V      GRA A     +F   E +  L    
Sbjct  313  TDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINLP---  369

Query  495  INEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQ  545
               A+E  +E  +     + + +  A I+DL      +      +R N   
Sbjct  370  ---AIEEYIEHTIP----VSEYDASALIQDLPAPIRMRAPRVQQRRTNTGG  413


 Score = 37.5 bits (85),  Expect = 0.45, Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 37/120 (31%), Gaps = 15/120 (13%)

Query  26   TGAGKTRAAAYVAKRHLETVDGA--------KVVVLVNRVHLVTQHGEEFRRML--DGRW  75
            TG GKT A       HL T            + +++     L  Q   +   ++   G  
Sbjct  55   TGTGKTLAFLTATFNHLLTTPEHEGRQPTQPRAIIMAPTRELAIQIFNDAEPLIASTGLK  114

Query  76   TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH  135
                  G+   +     L    D+LI T   +        ++    L     +V+DE   
Sbjct  115  AALAYGGESYDKQL-AKLQDGVDILIGTTGRIIDFY----KQRVFNLNNIQAVVLDEADR  169


>sp|Q8DDN6|RHLB_VIBVU ATP-dependent RNA helicase RhlB OS=Vibrio 
vulnificus (strain CMCP6) OX=216895 GN=rhlB PE=3 SV=1
Length=435

 Score = 182 bits (462),  Expect = 2e-49, Method: Composition-based stats.
 Identities = 74/333 (22%), Positives = 123/333 (37%), Gaps = 60/333 (18%)

Query  252  KFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR-----YNDALLIHDTVRAVDALAAL  306
             +G + Y++Q+ KL     +      R+   + +R        A+++ +  R  D L  +
Sbjct  118  AYGGESYDKQLTKLQGGVDVLIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFD-LGFI  176

Query  307  QDFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPEN----PKLEMLEKIL  358
            +D          ++   + RL  LF      R  ELA    H PE+    P+ +   +I 
Sbjct  177  KDIRFLFR----RMPAPQERLNMLFSATLSYRVQELAFEHMHNPEHVVVEPEQKTGHRIQ  232

Query  359  QRQFSSSNSP---------------RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLL  403
            +  F  SN                 R IIF  T+    S+         L     R  LL
Sbjct  233  EELFYPSNEDKMALLQTLIEEEWPDRAIIFANTKYKCESIW------AHLAADGHRVGLL  286

Query  404  IGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI  463
             G         + Q+ +++++++F  G+++LLVAT VA  GL IP    V  Y L  +  
Sbjct  287  TG--------DVPQKKREKILEQFTQGSVDLLVATDVAARGLHIPQVTHVFNYDLPDDCE  338

Query  464  SMVQAR---GRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA  520
              V      GRA A     +F   + +  L       A+E  +E  +     +   +  A
Sbjct  339  DYVHRIGRTGRAGASGHSISFACEDYAINLP------AIEEYIEHTIP----VSDYDSSA  388

Query  521  KIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQ  553
             I+DL     T  A    +R N       +   
Sbjct  389  LIQDLPAPVRTPSARNQQRRTNTGGARSGDRKS  421


 Score = 37.5 bits (85),  Expect = 0.37, Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 37/120 (31%), Gaps = 15/120 (13%)

Query  26   TGAGKTRAAAYVAKRHLETVDGA--------KVVVLVNRVHLVTQHGEEFRRML--DGRW  75
            TG GKT A       HL T            + +++     L  Q   +   ++   G  
Sbjct  55   TGTGKTLAFLTATFNHLLTTPAHEGRQPTQPRAIIMAPTRELAIQIYNDAEPLIASTGIK  114

Query  76   TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH  135
                  G+   +     L    D+LI T   +        ++    L     +V+DE   
Sbjct  115  AALAYGGESYDKQL-TKLQGGVDVLIGTTGRIIDFY----KQRVFNLNNIQAVVLDEADR  169


>sp|A7MXT4|RHLB_VIBC1 ATP-dependent RNA helicase RhlB OS=Vibrio 
campbellii (strain ATCC BAA-1116) OX=2902295 GN=rhlB PE=3 
SV=1
Length=437

 Score = 180 bits (456),  Expect = 8e-49, Method: Composition-based stats.
 Identities = 73/351 (21%), Positives = 129/351 (37%), Gaps = 62/351 (18%)

Query  228  PFGDLLKKLMDQIHDHLEMPELS--RKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR  285
            P  +L  ++ +     +    L     +G + Y++Q+ KL +   +      R+   + +
Sbjct  92   PTRELAIQIFNDAAPLIASTGLKAALAYGGESYDKQLAKLQDGVDILIGTTGRIIDFYKQ  151

Query  286  R-----YNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKN  336
            R        A+++ +  R  D L  ++D          ++   + RL  LF      R  
Sbjct  152  RVFNLNNIQAVVLDEADRMFD-LGFIKDIRFLFR----RMPEPKERLNMLFSATLSYRVQ  206

Query  337  ELAHLATHGPEN----PKLEMLEKILQRQFSSSNSP---------------RGIIFTRTR  377
            ELA    H PE+    P+ +   +I +  F  SN                 R I+F  T+
Sbjct  207  ELAFEHMHNPEHVVVEPEQKTGHRIQEELFYPSNEDKMALLQTLIEEEWPDRAIVFANTK  266

Query  378  QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA  437
                S+         L     R  LL G         + Q+ +++++++F  G ++LLVA
Sbjct  267  HKCESIW------GHLAADGHRVGLLTG--------DVPQKKREKILEQFTRGEVDLLVA  312

Query  438  TSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR---GRARADQSVYAFVATEGSRELKREL  494
            T VA  GL IP    V  + L  +    V      GRA A     +F   + +  L    
Sbjct  313  TDVAARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGASGHSISFACEDYAINLP---  369

Query  495  INEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQ  545
                +E  +E A+     +   +  A I+DL      +      +R N   
Sbjct  370  ---PIEEYIEHAIP----VSDYDASALIQDLPAPLRMRAPRTQQRRTNTGG  413


 Score = 37.5 bits (85),  Expect = 0.47, Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 37/120 (31%), Gaps = 15/120 (13%)

Query  26   TGAGKTRAAAYVAKRHLETVDGA--------KVVVLVNRVHLVTQHGEEFRRML--DGRW  75
            TG GKT A       HL T            + +++     L  Q   +   ++   G  
Sbjct  55   TGTGKTLAFLTATFNHLLTTPEHEGRKPTQPRAIIMAPTRELAIQIFNDAAPLIASTGLK  114

Query  76   TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH  135
                  G+   +     L    D+LI T   +        ++    L     +V+DE   
Sbjct  115  AALAYGGESYDKQL-AKLQDGVDILIGTTGRIIDFY----KQRVFNLNNIQAVVLDEADR  169


>sp|C3LQR1|RHLB_VIBCM ATP-dependent RNA helicase RhlB OS=Vibrio 
cholerae serotype O1 (strain M66-2) OX=579112 GN=rhlB PE=3 
SV=1
Length=438

 Score = 178 bits (450),  Expect = 7e-48, Method: Composition-based stats.
 Identities = 78/348 (22%), Positives = 134/348 (39%), Gaps = 63/348 (18%)

Query  228  PFGDLLKKLMDQIHDHLEMPELS--RKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR  285
            P  +L  ++ +     L    L     +G + Y++Q+ KL     +      R+   + +
Sbjct  92   PTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLAKLQSGVDILIGTTGRIIDFYKQ  151

Query  286  R-----YNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKN  336
            R     +  A+++ +  R  D L  ++D          ++   + RL  LF      R  
Sbjct  152  RVFNLNHIQAVVLDEADRMFD-LGFIKDIRFLFR----RMPEPKDRLNMLFSATLSYRVQ  206

Query  337  ELAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTR  377
            ELA    + PE+    P+ +   +I +  F  SN                 R IIF  T+
Sbjct  207  ELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQTLIEEEWPDRAIIFANTK  266

Query  378  QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA  437
                 +         L   + R  LL G         + Q+ ++ ++++F  G +++LVA
Sbjct  267  HRCEQIW------AHLAADNHRVGLLTG--------DVPQKKRERILEQFTQGDVDILVA  312

Query  438  TSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR---GRARADQSVYAFVATEGSRELKREL  494
            T VA  GL IP    V  Y L  +    V      GRA A     +F   E +  L    
Sbjct  313  TDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINLP---  369

Query  495  INEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQREN  542
               A+E+ +E A+      D +   A + DL  A L+ R++   +R N
Sbjct  370  ---AIESYIEHAIPT-SDYDPS---ALLTDL-PAPLSLRSSPQQRRTN  409


 Score = 38.6 bits (88),  Expect = 0.16, Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 38/120 (32%), Gaps = 15/120 (13%)

Query  26   TGAGKTRAAAYVAKRHLETVDGA--------KVVVLVNRVHLVTQHGEEFRRML--DGRW  75
            TG GKT A       HL T   A        + +++     L  Q   +   +L   G  
Sbjct  55   TGTGKTLAFLTATFNHLLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLK  114

Query  76   TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH  135
                  G+   +     L    D+LI T   +        ++    L     +V+DE   
Sbjct  115  AALAYGGESYDKQL-AKLQSGVDILIGTTGRIIDFY----KQRVFNLNHIQAVVLDEADR  169


>sp|Q9KV52|RHLB_VIBCH ATP-dependent RNA helicase RhlB OS=Vibrio 
cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) 
OX=243277 GN=rhlB PE=3 SV=1
Length=438

 Score = 178 bits (450),  Expect = 7e-48, Method: Composition-based stats.
 Identities = 78/348 (22%), Positives = 134/348 (39%), Gaps = 63/348 (18%)

Query  228  PFGDLLKKLMDQIHDHLEMPELS--RKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR  285
            P  +L  ++ +     L    L     +G + Y++Q+ KL     +      R+   + +
Sbjct  92   PTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLAKLQSGVDILIGTTGRIIDFYKQ  151

Query  286  R-----YNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKN  336
            R     +  A+++ +  R  D L  ++D          ++   + RL  LF      R  
Sbjct  152  RVFNLNHIQAVVLDEADRMFD-LGFIKDIRFLFR----RMPEPKDRLNMLFSATLSYRVQ  206

Query  337  ELAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTR  377
            ELA    + PE+    P+ +   +I +  F  SN                 R IIF  T+
Sbjct  207  ELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQTLIEEEWPDRAIIFANTK  266

Query  378  QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA  437
                 +         L   + R  LL G         + Q+ ++ ++++F  G +++LVA
Sbjct  267  HRCEQIW------AHLAADNHRVGLLTG--------DVPQKKRERILEQFTQGDVDILVA  312

Query  438  TSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR---GRARADQSVYAFVATEGSRELKREL  494
            T VA  GL IP    V  Y L  +    V      GRA A     +F   E +  L    
Sbjct  313  TDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINLP---  369

Query  495  INEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQREN  542
               A+E+ +E A+      D +   A + DL  A L+ R++   +R N
Sbjct  370  ---AIESYIEHAIPT-SDYDPS---ALLTDL-PAPLSLRSSPQQRRTN  409


 Score = 38.6 bits (88),  Expect = 0.16, Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 38/120 (32%), Gaps = 15/120 (13%)

Query  26   TGAGKTRAAAYVAKRHLETVDGA--------KVVVLVNRVHLVTQHGEEFRRML--DGRW  75
            TG GKT A       HL T   A        + +++     L  Q   +   +L   G  
Sbjct  55   TGTGKTLAFLTATFNHLLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLK  114

Query  76   TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH  135
                  G+   +     L    D+LI T   +        ++    L     +V+DE   
Sbjct  115  AALAYGGESYDKQL-AKLQSGVDILIGTTGRIIDFY----KQRVFNLNHIQAVVLDEADR  169


>sp|A5F3R4|RHLB_VIBC3 ATP-dependent RNA helicase RhlB OS=Vibrio 
cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 
395 / O395) OX=345073 GN=rhlB PE=3 SV=1
Length=438

 Score = 178 bits (450),  Expect = 7e-48, Method: Composition-based stats.
 Identities = 78/348 (22%), Positives = 134/348 (39%), Gaps = 63/348 (18%)

Query  228  PFGDLLKKLMDQIHDHLEMPELS--RKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR  285
            P  +L  ++ +     L    L     +G + Y++Q+ KL     +      R+   + +
Sbjct  92   PTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLAKLQSGVDILIGTTGRIIDFYKQ  151

Query  286  R-----YNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKN  336
            R     +  A+++ +  R  D L  ++D          ++   + RL  LF      R  
Sbjct  152  RVFNLNHIQAVVLDEADRMFD-LGFIKDIRFLFR----RMPEPKDRLNMLFSATLSYRVQ  206

Query  337  ELAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTR  377
            ELA    + PE+    P+ +   +I +  F  SN                 R IIF  T+
Sbjct  207  ELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQTLIEEEWPDRAIIFANTK  266

Query  378  QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA  437
                 +         L   + R  LL G         + Q+ ++ ++++F  G +++LVA
Sbjct  267  HRCEQIW------AHLAADNHRVGLLTG--------DVPQKKRERILEQFTQGDVDILVA  312

Query  438  TSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR---GRARADQSVYAFVATEGSRELKREL  494
            T VA  GL IP    V  Y L  +    V      GRA A     +F   E +  L    
Sbjct  313  TDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINLP---  369

Query  495  INEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQREN  542
               A+E+ +E A+      D +   A + DL  A L+ R++   +R N
Sbjct  370  ---AIESYIEHAIPT-SDYDPS---ALLTDL-PAPLSLRSSPQQRRTN  409


 Score = 38.6 bits (88),  Expect = 0.16, Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 38/120 (32%), Gaps = 15/120 (13%)

Query  26   TGAGKTRAAAYVAKRHLETVDGA--------KVVVLVNRVHLVTQHGEEFRRML--DGRW  75
            TG GKT A       HL T   A        + +++     L  Q   +   +L   G  
Sbjct  55   TGTGKTLAFLTATFNHLLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLK  114

Query  76   TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH  135
                  G+   +     L    D+LI T   +        ++    L     +V+DE   
Sbjct  115  AALAYGGESYDKQL-AKLQSGVDILIGTTGRIIDFY----KQRVFNLNHIQAVVLDEADR  169


>sp|B7VME9|RHLB_VIBA3 ATP-dependent RNA helicase RhlB OS=Vibrio 
atlanticus (strain LGP32) OX=575788 GN=rhlB PE=3 SV=1
Length=436

 Score = 175 bits (444),  Expect = 5e-47, Method: Composition-based stats.
 Identities = 79/409 (19%), Positives = 145/409 (35%), Gaps = 65/409 (16%)

Query  171  GTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFG  230
            G    + +      VL    ++              L        K      R+   P  
Sbjct  28   GFDYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNHLLKTPEHEGRKPNQPRA  87

Query  231  DLL---KKLMDQIHDHLEMP------ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYA  281
             ++   ++L  QI++  +        + +  +G + Y++Q+ K+ E A +      R+  
Sbjct  88   IIMAPTRELAIQIYNDADSLVASTGIKAALAYGGESYDKQLGKIEEGADILIGTTGRIID  147

Query  282  LHLRR-----YNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD---  333
             + ++     +  A+++ +  R  D L  ++D          ++   + RL  LF     
Sbjct  148  FYKQKVFNLNHIQAVVLDEADRMFD-LGFIKDIRFLFR----RMPEPKDRLNMLFSATLS  202

Query  334  -RKNELAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIF  373
             R  ELA    H PE+    P+ +   +I +  F  SN                 R IIF
Sbjct  203  YRVQELAFEHMHNPEHVVVEPERKTGHRIQEELFYPSNEHKMALLQTLIEEEWPDRAIIF  262

Query  374  TRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN  433
              T+    S+         L     R  LL G         + Q+ +++++++F  G ++
Sbjct  263  ANTKHKCESVW------GHLAADGHRVGLLTG--------DVPQKKREKILEQFTKGDVD  308

Query  434  LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKR  492
            LLVAT VA  GL IP    V  + L  +    V   GR  RA +S ++         +  
Sbjct  309  LLVATDVAARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGESGHSISFACEDYAIN-  367

Query  493  ELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRE  541
                  +E  +E A+     M   +  A + DL      +      +R 
Sbjct  368  ---LPPIEEYIEHAIP----MSDYDASALLEDLPAPMRLRTRNPQQRRS  409


 Score = 37.5 bits (85),  Expect = 0.37, Method: Composition-based stats.
 Identities = 21/120 (18%), Positives = 37/120 (31%), Gaps = 15/120 (13%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRR--MLDGRW  75
            TG GKT A       HL           +  + +++     L  Q   +        G  
Sbjct  55   TGTGKTLAFLTATFNHLLKTPEHEGRKPNQPRAIIMAPTRELAIQIYNDADSLVASTGIK  114

Query  76   TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH  135
                  G+   +   G +    D+LI T   +        +++   L     +V+DE   
Sbjct  115  AALAYGGESYDKQL-GKIEEGADILIGTTGRIIDFY----KQKVFNLNHIQAVVLDEADR  169


>sp|A4STJ7|RHLB_AERS4 ATP-dependent RNA helicase RhlB OS=Aeromonas 
salmonicida (strain A449) OX=382245 GN=rhlB PE=3 SV=1
Length=429

 Score = 173 bits (439),  Expect = 2e-46, Method: Composition-based stats.
 Identities = 71/340 (21%), Positives = 123/340 (36%), Gaps = 60/340 (18%)

Query  247  PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND-----ALLIHDTVRAVD  301
             +L   +G + Y++Q+  L +   +      R+      +  D      +++ +  R  D
Sbjct  113  LKLGLAYGGEGYDKQLAVLEQGVDILIGTTGRIIDYFKSKVIDLSNIQVVVLDEADRMFD  172

Query  302  ALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPEN----PKLEM  353
             L  ++D          ++     RL  LF      R  ELA+   + PE+    P+   
Sbjct  173  -LGFIKDIRFLFR----RMPAPTERLSMLFSATLSLRVQELAYEHMNHPEHVQIEPEQMT  227

Query  354  LEKILQRQFSSSNSPR---------------GIIFTRTRQSAHSLLLWLQQQQGLQTVDI  398
              +I +  F  SN  +                I+F  T+     +  WL+          
Sbjct  228  GIRIQEELFYPSNEDKMLLLLSLMEEEWPEKAIVFANTKHVCEDVHAWLEN------DGH  281

Query  399  RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL  458
            R  LL G         + Q+ + ++++ F  GTL++LVAT VA  GL IP    V  Y L
Sbjct  282  RVGLLTG--------DVPQKKRMKILEDFTKGTLDILVATDVAARGLHIPDVTHVFNYDL  333

Query  459  LTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAE  517
              +    V   GR  RA +S ++                 A+E  +   +  V K D+  
Sbjct  334  PDDAEDYVHRIGRTGRAGKSGHSISLACEDYAFN----LPAIEEYIHHPIP-VSKYDREA  388

Query  518  Y-------QAKIRDLQQAALTKRAAQAAQRENQRQQFPVE  550
                    +  +R+ Q      R  Q     N R++ P +
Sbjct  389  LLDDVTAPKRVVRNRQPVNRNMRDRQGGGNSNNRRRPPRK  428


>sp|B5FF87|RHLB_ALIFM ATP-dependent RNA helicase RhlB OS=Aliivibrio 
fischeri (strain MJ11) OX=388396 GN=rhlB PE=3 SV=1
Length=432

 Score = 173 bits (437),  Expect = 4e-46, Method: Composition-based stats.
 Identities = 74/353 (21%), Positives = 128/353 (36%), Gaps = 62/353 (18%)

Query  228  PFGDLLKKLMDQIHDHLEMPELS--RKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR  285
            P  +L  ++ +     +    L     +G + YE+Q   + +   +      R+   + +
Sbjct  92   PTRELAIQIFNDAESLIASTGLKAALAYGGERYEKQQQVIEQGVDILIGTTGRIIDFYKQ  151

Query  286  RYND-----ALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKN  336
             + D     A+++ +  R  D L  ++D          ++     RL  LF      R  
Sbjct  152  GHIDFKMIQAVVLDEADRMFD-LGFIKDIRF----IFRRMPAPTERLNMLFSATLSYRVQ  206

Query  337  ELAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTR  377
            ELA      PE+    P+ +   +I +  F  SN                 R IIF  T+
Sbjct  207  ELAFEHMQEPEHVVVEPEQKTGHRIKEELFYPSNDHKMALLQTLIEEEWPDRAIIFANTK  266

Query  378  QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA  437
                S+         L     R  LL G         + Q+ ++ ++++F  G +++LVA
Sbjct  267  HKCESVW------GHLAADKHRVGLLTG--------DVPQKKRERILEEFTQGNVDILVA  312

Query  438  TSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR---GRARADQSVYAFVATEGSRELKREL  494
            T VA  GL IP    V  + L       V      GRA A  +  +F   E +  L    
Sbjct  313  TDVAARGLHIPQVTHVFNFDLPNEAEDYVHRIGRTGRAGASGNSISFACEEYAINLP---  369

Query  495  INEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQF  547
               A+E  +E ++         +  A + DL      +R  Q  +R N  Q+ 
Sbjct  370  ---AIEEYIEHSIPQ----SDYDASALLEDLPAPLRLQRRPQQNRRNNNGQRQ  415


 Score = 41.7 bits (96),  Expect = 0.019, Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 45/140 (32%), Gaps = 17/140 (12%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVH  58
            Q + +   L G++I     TG GKT A       HL          +   + +++     
Sbjct  36   QAKALPVLLAGQDIAGQAQTGTGKTLAFLTATFNHLLTTPAPEGRKITQPRAIIMAPTRE  95

Query  59   LVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPE  115
            L  Q         D    + +         G     +   ++    ++L      +    
Sbjct  96   LAIQ------IFNDAESLIASTGLKAALAYGGERYEKQQQVIEQGVDILIGTTGRIIDFY  149

Query  116  EEEHVELTVFSLIVVDECHH  135
            ++ H++  +   +V+DE   
Sbjct  150  KQGHIDFKMIQAVVLDEADR  169


>sp|Q5E8U5|RHLB_ALIF1 ATP-dependent RNA helicase RhlB OS=Aliivibrio 
fischeri (strain ATCC 700601 / ES114) OX=312309 GN=rhlB 
PE=3 SV=2
Length=432

 Score = 172 bits (436),  Expect = 4e-46, Method: Composition-based stats.
 Identities = 74/353 (21%), Positives = 128/353 (36%), Gaps = 62/353 (18%)

Query  228  PFGDLLKKLMDQIHDHLEMPELS--RKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR  285
            P  +L  ++ +     +    L     +G + YE+Q   + +   +      R+   + +
Sbjct  92   PTRELAIQIFNDAESLIASTGLKAALAYGGERYEKQQQVIEQGVDILIGTTGRIIDFYKQ  151

Query  286  RYND-----ALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKN  336
             + D     A+++ +  R  D L  ++D          ++     RL  LF      R  
Sbjct  152  GHIDFKMIQAVVLDEADRMFD-LGFIKDIRF----IFRRMPAPTERLNMLFSATLSYRVQ  206

Query  337  ELAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTR  377
            ELA      PE+    P+ +   +I +  F  SN                 R IIF  T+
Sbjct  207  ELAFEHMQEPEHVVVEPEQKTGHRIKEELFYPSNDHKMALLQTLIEEEWPDRAIIFANTK  266

Query  378  QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA  437
                S+         L     R  LL G         + Q+ ++ ++++F  G +++LVA
Sbjct  267  HKCESVW------GHLAADKHRVGLLTG--------DVPQKKRERILEEFTQGNVDILVA  312

Query  438  TSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR---GRARADQSVYAFVATEGSRELKREL  494
            T VA  GL IP    V  + L       V      GRA A  +  +F   E +  L    
Sbjct  313  TDVAARGLHIPQVTHVFNFDLPNEAEDYVHRIGRTGRAGASGNSISFACEEYAINLP---  369

Query  495  INEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQF  547
               A+E  +E ++         +  A + DL      +R  Q  +R N  Q+ 
Sbjct  370  ---AIEEYIEHSIPQ----SDYDASALLEDLPAPLRLQRRPQQNRRNNNGQRQ  415


 Score = 41.7 bits (96),  Expect = 0.019, Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 45/140 (32%), Gaps = 17/140 (12%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVH  58
            Q + +   L G++I     TG GKT A       HL          +   + +++     
Sbjct  36   QAKALPVLLAGQDIAGQAQTGTGKTLAFLTATFNHLLTTPAPEGRKITQPRAIIMAPTRE  95

Query  59   LVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPE  115
            L  Q         D    + +         G     +   ++    ++L      +    
Sbjct  96   LAIQ------IFNDAESLIASTGLKAALAYGGERYEKQQQVIEQGVDILIGTTGRIIDFY  149

Query  116  EEEHVELTVFSLIVVDECHH  135
            ++ H++  +   +V+DE   
Sbjct  150  KQGHIDFKMIQAVVLDEADR  169


>sp|A0KEG9|RHLB_AERHH ATP-dependent RNA helicase RhlB OS=Aeromonas 
hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 
/ BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB 
9240 / NCTC 8049) OX=380703 GN=rhlB PE=3 SV=1
Length=429

 Score = 171 bits (434),  Expect = 1e-45, Method: Composition-based stats.
 Identities = 71/340 (21%), Positives = 123/340 (36%), Gaps = 60/340 (18%)

Query  247  PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND-----ALLIHDTVRAVD  301
             +L   +G + Y++Q+  L +   +      R+      +  D      +++ +  R  D
Sbjct  113  LKLGLAYGGEGYDKQLAVLEQGVDILIGTTGRIIDYFKSKVIDLSNIQVVVLDEADRMFD  172

Query  302  ALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPEN----PKLEM  353
             L  ++D          ++  A  RL  LF      R  ELA+   + PE+    P+   
Sbjct  173  -LGFIKDIRFLFR----RMPPATERLSMLFSATLSLRVQELAYEHMNHPEHVQIEPEQMT  227

Query  354  LEKILQRQFSSSNSPR---------------GIIFTRTRQSAHSLLLWLQQQQGLQTVDI  398
              +I +  F  SN  +                I+F  T+     +  WL+          
Sbjct  228  GVRIKEELFYPSNEDKMLLLLSLMEEEWPEKAIVFANTKHVCEDVHAWLEN------DGH  281

Query  399  RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL  458
            R  LL G         + Q+ + ++++ F  GT+++LVAT VA  GL IP    V  Y L
Sbjct  282  RVGLLTG--------DVPQKKRMKILEDFTKGTVDILVATDVAARGLHIPDVTHVFNYDL  333

Query  459  LTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAE  517
              +    V   GR  RA +S ++                 A+E  +   +  V K D+  
Sbjct  334  PDDAEDYVHRIGRTGRAGKSGHSISLACEDYAFN----LPAIEEYIHHPIP-VSKYDREA  388

Query  518  Y-------QAKIRDLQQAALTKRAAQAAQRENQRQQFPVE  550
                    +   R+ Q      R  Q     N R++ P +
Sbjct  389  LLDDVTAPKRVFRNRQPVNRNMRDRQGGGNSNNRRRPPRK  428


 Score = 40.9 bits (94),  Expect = 0.035, Method: Composition-based stats.
 Identities = 25/121 (21%), Positives = 42/121 (35%), Gaps = 17/121 (14%)

Query  26   TGAGKT--RAAAY---VAKRHL---ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV  77
            TG GKT    AA    +    L     ++  + +++     L  Q   +   M     T 
Sbjct  55   TGTGKTLAFLAATFNYLLTHPLTKPRLINQPRAIIMAPTRELAVQIYNDAESMS--ASTG  112

Query  78   TTLSGDMGPRAGFGHLA---RCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECH  134
              L    G       LA   +  D+LI T   +     S      ++L+   ++V+DE  
Sbjct  113  LKLGLAYGGEGYDKQLAVLEQGVDILIGTTGRIIDYFKSKV----IDLSNIQVVVLDEAD  168

Query  135  H  135
             
Sbjct  169  R  169


>sp|Q2NQB2|RHLB_SODGM ATP-dependent RNA helicase RhlB OS=Sodalis 
glossinidius (strain morsitans) OX=343509 GN=rhlB PE=3 SV=1
Length=415

 Score = 169 bits (428),  Expect = 4e-45, Method: Composition-based stats.
 Identities = 70/329 (21%), Positives = 115/329 (35%), Gaps = 56/329 (17%)

Query  247  PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN-----DALLIHDTVRAVD  301
             ++   +G   Y++Q+  L     +      R+     + Y        +++ +  R  D
Sbjct  113  LKMGLAYGGDGYDKQLKVLEAGVDILVGTTGRLIDYTKQNYVNMSAIQVVVLDEADRMFD  172

Query  302  ALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPENPKLEML---  354
             L  ++D          ++  A  RL  LF      R  ELA    +  E  ++E L   
Sbjct  173  -LGFIKDIRWLFR----RMPAAAGRLNMLFSATLSYRVRELAFEHMNNAEYVEVEPLQKT  227

Query  355  -EKILQRQFSSSNS---------------PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI  398
              +I +  F  SN                 R IIF  T+     +         L     
Sbjct  228  GHRIQEELFYPSNEEKMRLLQTLIEEEWPDRCIIFANTKHRCEDIW------GHLAADGH  281

Query  399  RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL  458
            R  LL G         ++Q+ +  +++KF  G L++LVAT VA  GL IP    V  Y L
Sbjct  282  RVGLLTG--------DVSQKRRLRILEKFTQGALDILVATDVAARGLHIPSVTHVFNYDL  333

Query  459  LTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAE  517
              +    V   GR  RA +S  +         L       A+E+ +   +   +      
Sbjct  334  PDDCEDYVHRIGRTGRAGESGCSISLACEEYALN----LTAIESYIGHQIPVSKYNS---  386

Query  518  YQAKIRDLQQAALTKRAAQAAQRENQRQQ  546
              A + DL       R    A R N+++ 
Sbjct  387  -DALLTDLPAPKRLTRRRSGAPRHNRKRP  414


 Score = 50.2 bits (118),  Expect = 5e-05, Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV  77
            TG GKT A       HL           +  + +++     L  Q         D     
Sbjct  55   TGTGKTLAFLTATFHHLLTHPAAEGRQTNQPRALIMAPTRELAVQ------IHSDAEPLA  108

Query  78   TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH  134
                  MG   G     +   +L    ++L      L    ++ +V ++   ++V+DE  
Sbjct  109  QATGLKMGLAYGGDGYDKQLKVLEAGVDILVGTTGRLIDYTKQNYVNMSAIQVVVLDEAD  168

Query  135  H  135
             
Sbjct  169  R  169


>sp|C4LB49|RHLB_TOLAT ATP-dependent RNA helicase RhlB OS=Tolumonas 
auensis (strain DSM 9187 / NBRC 110442 / TA 4) OX=595494 
GN=rhlB PE=3 SV=1
Length=425

 Score = 169 bits (428),  Expect = 6e-45, Method: Composition-based stats.
 Identities = 79/375 (21%), Positives = 135/375 (36%), Gaps = 62/375 (17%)

Query  207  LQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVK  264
            L  HS    ++ N        P  +L  ++ +      E    ++   +G   Y++Q+  
Sbjct  71   LLTHSASAERRQNQPRVLIMAPTRELAVQIYNDAVPMSESCGFKMGLAYGGDGYDKQLAV  130

Query  265  LSEAAALAGLQEQRVYALHLRRYND-----ALLIHDTVRAVDALAALQDFYHREHVTKTQ  319
            L E   L      R+     +   D      +++ +  R  D L  ++D          +
Sbjct  131  LQEGVDLLIGTTGRIIDYLKQGIIDLGAIQVVVLDEADRMFD-LGFIKDIRFLFR----R  185

Query  320  ILCAERRLLALFDD----RKNELAHLATHGPEN----PKLEMLEKILQRQFSSSNSPR--  369
            +    +RL  LF      R  ELA+   + P++    P+    ++I +  F  SN  +  
Sbjct  186  MPPPAQRLNMLFSATLSLRVQELAYEHMNEPQHIQIEPEQMTGQRIKEELFYPSNEDKML  245

Query  370  -------------GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT  416
                          IIF  T+     +  WLQ          R  LL G         + 
Sbjct  246  LLLTLMEEDWPEKAIIFANTKHGCEDVHAWLQ------ADGHRVGLLTG--------DVP  291

Query  417  QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARAD  475
            Q+ + ++++ F  G L++LVAT VA  GL IP  + V  Y L  +    V   GR  RA 
Sbjct  292  QKKRLKILEDFTAGLLDVLVATDVAARGLHIPDVSHVFNYDLPDDAEDYVHRIGRTGRAG  351

Query  476  QSVYA--FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKR  533
            +S +A  F   + +  L        +E      +  V K D +   A + D+       R
Sbjct  352  RSGHAISFACEDYAFNLPE------IEEYTHHPIP-VSKYDPS---ALLDDVTAPKRVVR  401

Query  534  AAQAAQRENQRQQFP  548
                  R  + +Q  
Sbjct  402  HRLPVNRNMRDRQST  416


 Score = 48.3 bits (113),  Expect = 2e-04, Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 50/139 (36%), Gaps = 15/139 (11%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYV-AKRHL--------ETVDGAKVVVLVNRV  57
            Q E I   L GKNI     TG GKT  A       +L           +  +V+++    
Sbjct  36   QAETIPLLLTGKNIAGQAQTGTGKT-IAFLAGTFNYLLTHSASAERRQNQPRVLIMAPTR  94

Query  58   HLVTQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE  116
             L  Q   +   M +   + +    G  G       L    DLLI T   +   L    +
Sbjct  95   ELAVQIYNDAVPMSESCGFKMGLAYGGDGYDKQLAVLQEGVDLLIGTTGRIIDYL----K  150

Query  117  EEHVELTVFSLIVVDECHH  135
            +  ++L    ++V+DE   
Sbjct  151  QGIIDLGAIQVVVLDEADR  169


>sp|Q15N18|RHLB_PSEA6 ATP-dependent RNA helicase RhlB OS=Pseudoalteromonas 
atlantica (strain T6c / ATCC BAA-1087) OX=3042615 
GN=rhlB PE=3 SV=1
Length=421

 Score = 168 bits (425),  Expect = 1e-44, Method: Composition-based stats.
 Identities = 74/369 (20%), Positives = 132/369 (36%), Gaps = 64/369 (17%)

Query  211  SQQPCKQYNLCHRRSQDPFGDLLKKLMD--QIHDHLEMPELSRKFGTQMYEQQVVKLSEA  268
            + QP K+          P  +L  ++ +  ++        L   +G + Y+ Q  KL E 
Sbjct  74   NPQPTKKQPRA--IIMAPTRELAVQIFNDAELLSQHTGLSLGLIYGGEGYQSQREKLEEG  131

Query  269  AALAGLQEQRVYALHLRR-----YNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCA  323
              +      R+   + +           ++ +  R  D L  ++D  +  +    ++   
Sbjct  132  VDIIIGTTGRIIDYYKQNIFSLAGIQVAVLDEADRMFD-LGFIKDIRYLFN----RMPKP  186

Query  324  ERRLLALFDD----RKNELAHLATHGPEN----PKLEMLEKILQRQFSSSNSPR------  369
              RL  LF      R  ELA+     P +    P+ +   +I +  F  S+  +      
Sbjct  187  TERLSMLFSATLSYRVQELAYEHMDNPTHVQVEPERKTGTRIKEELFYPSDEDKMALLLS  246

Query  370  ---------GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ  420
                      I+F  T+ S   +  WLQ                G      S  + Q  +
Sbjct  247  LMEEEWPDKAIVFANTKHSCEKVADWLQAD--------------GHRVGLLSGDVPQNKR  292

Query  421  QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR---GRARADQS  477
             ++++ F  G L++LVAT VA  GL IP  + V  Y L  +    V      GRA    S
Sbjct  293  LKILEDFTSGKLDILVATDVAARGLHIPMVSHVFNYDLPDDAEDYVHRIGRTGRAGQSGS  352

Query  478  VYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQA  537
              +F     +  L       A+ET +E A+     + + +  A +RD+       +    
Sbjct  353  SISFACERYALNLP------AIETYIEHAIP----VTEYQADALLRDVTPPKPRHKKRMQ  402

Query  538  AQRENQRQQ  546
              R  Q++Q
Sbjct  403  NGRNPQKRQ  411


 Score = 35.5 bits (80),  Expect = 1.6, Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 48/138 (35%), Gaps = 16/138 (12%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA------KVVVLVNRVHLV  60
            Q   + P LEG +I     TG GKT  A  VA  H    +        + +++     L 
Sbjct  36   QALSLPPLLEGNDIAGQAQTGTGKT-IAFLVATFHYLLSNPQPTKKQPRAIIMAPTRELA  94

Query  61   TQ---HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE  117
             Q     E   +      ++  + G  G ++    L    D++I T   +        ++
Sbjct  95   VQIFNDAELLSQHTGL--SLGLIYGGEGYQSQREKLEEGVDIIIGTTGRIIDYY----KQ  148

Query  118  EHVELTVFSLIVVDECHH  135
                L    + V+DE   
Sbjct  149  NIFSLAGIQVAVLDEADR  166


>sp|Q65RG7|RHLB_MANSM ATP-dependent RNA helicase RhlB OS=Mannheimia 
succiniciproducens (strain KCTC 0769BP / MBEL55E) OX=221988 
GN=rhlB PE=3 SV=1
Length=417

 Score = 166 bits (421),  Expect = 5e-44, Method: Composition-based stats.
 Identities = 77/356 (22%), Positives = 133/356 (37%), Gaps = 62/356 (17%)

Query  228  PFGDLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR  285
            P  +L  ++       ++   L     +G   Y++Q+  +   A +      R+     +
Sbjct  88   PTRELAVQIAHDAERMVKTTGLKTALAYGGDGYDKQLKAIEAGADIIIGTTGRIIDYVKQ  147

Query  286  R-----YNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKN  336
                  +   +++ +  R  D L  ++D  +       +    ++RL  LF      +  
Sbjct  148  NIIALSHIQVVVLDEADRMFD-LGFIKDIRY----LMRKCPSPKQRLTLLFSATLSYKVR  202

Query  337  ELAHLATHGPENPKLEML----EKILQRQFSSSNSP---------------RGIIFTRTR  377
            ELA    + PE  ++E L     +I +  F  SN                 R IIF  T+
Sbjct  203  ELAFEDMNDPEYVEVEPLQKTGHRIKEELFYPSNEDKMPLLITLLEEEWPERCIIFANTK  262

Query  378  QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA  437
                 +  +L           R  LL G         + Q+ +  ++++F DG L++LVA
Sbjct  263  HQCEKIWGYL------AADGHRVGLLTG--------DVAQKKRLSLLKQFTDGALDILVA  308

Query  438  TSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSV--YAFVATEGSRELKREL  494
            T VA  GL IP    V  Y L  +    V   GR  RA +S    +F   E +  L    
Sbjct  309  TDVAARGLHIPDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMNLP---  365

Query  495  INEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVE  550
               A+E  +   +A  Q     +  + IRDL +    K +  A+ R N+    P +
Sbjct  366  ---AIEEYIGHHIAVSQ----YDSDSLIRDLAKPYRLKPSLPASNRHNRNGAKPFK  414


 Score = 35.9 bits (81),  Expect = 1.3, Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 38/116 (33%), Gaps = 11/116 (9%)

Query  26   TGAGKTRAAAYVAKRHL----ETVDGAKVVVLVNRVHLVTQHGEEFRRM--LDGRWTVTT  79
            TG GKT A       HL       +  + +++     L  Q   +  RM    G  T   
Sbjct  55   TGTGKTMAFLTATFHHLLEHPVKTNHPRALIMAPTRELAVQIAHDAERMVKTTGLKTALA  114

Query  80   LSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH  135
              GD     G+    +  +            +    ++  + L+   ++V+DE   
Sbjct  115  YGGD-----GYDKQLKAIEAGADIIIGTTGRIIDYVKQNIIALSHIQVVVLDEADR  165


>sp|Q970I2|XPB2_SULTO DNA 3'-5' translocase XPB2 OS=Sulfurisphaera 
tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 
7) OX=273063 GN=xpb2 PE=1 SV=1
Length=439

 Score = 166 bits (421),  Expect = 7e-44, Method: Composition-based stats.
 Identities = 101/486 (21%), Positives = 168/486 (35%), Gaps = 132/486 (27%)

Query  1    MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKV--VVLVNRVH  58
            +ELR YQ E +   L+ K  II LPTGAGKT+ A       L+ V   KV  +++V  + 
Sbjct  67   IELRDYQAEAVKAWLKEKRGIIVLPTGAGKTQVA-------LKIVSIMKVATLIVVPTID  119

Query  59   LVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEE  118
            L+TQ  E   + L           D  P    G       + + T +    A T  EE  
Sbjct  120  LITQWKERINKYL-----------DFDPGIIGGGEDSLKGITVITYD---SAYTRAEELG  165

Query  119  HVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKL  178
                  F L++ DE HH   +  Y+++   +           P  LGLTA+P        
Sbjct  166  ----NKFPLLIFDEVHHLPSEG-YSIMAQLF---------ASPYRLGLTATPERDDG---  208

Query  179  DGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMD  238
                                          +H   P     + +R+S +           
Sbjct  209  ------------------------------KHELYPILVGPIVYRKSVEELAGKYIAKYK  238

Query  239  QIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVR  298
                ++ +    +K     Y+    KL +  +  GL+ Q +                   
Sbjct  239  IKKLYVSLTNEEKK----RYDGLRKKLKDFLSSRGLKLQNL-------------------  275

Query  299  AVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKIL  358
                     D +HR      +   A   LLA  +     +   +       K+E L +IL
Sbjct  276  ---------DDFHRLVKLAAKDKEAREALLAWHESLNIAVNSQS-------KIEKLREIL  319

Query  359  QRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQR  418
            Q       + + I+FTR  Q A+ +                   LI              
Sbjct  320  QEY----KNEKIIVFTRDTQMAYRISK---------------TFLIPVVTYKTDKD----  356

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSV  478
            +++E++QKF+DG   ++VA++V +EG+D+P   + +  G    +   +Q  GR    +  
Sbjct  357  EREEILQKFRDGEYRVIVASTVFDEGVDVPDATLAIVMGGYGTKRQFLQRLGRILRKKDK  416

Query  479  YAFVAT  484
             A +  
Sbjct  417  EALLIE  422


>sp|A1SZG4|RHLB_PSYIN ATP-dependent RNA helicase RhlB OS=Psychromonas 
ingrahamii (strain DSM 17664 / CCUG 51855 / 37) OX=357804 
GN=rhlB PE=3 SV=1
Length=418

 Score = 164 bits (416),  Expect = 2e-43, Method: Composition-based stats.
 Identities = 82/423 (19%), Positives = 148/423 (35%), Gaps = 69/423 (16%)

Query  163  VLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCH  222
            + GLT S G    + +      +     ++              L              +
Sbjct  21   ISGLT-SQGYEYCTPIQALSLPITLTGKDIAGQAQTGTGKTLAFLPAVFHHLLTNAQPEN  79

Query  223  RRSQDPFGDLL---KKLMDQIHD------HLEMPELSRKFGTQMYEQQVVKLSEAAALAG  273
            RR   P   +L   ++L  QIH        +    L   +G +  E Q  KL +   +  
Sbjct  80   RRKNQPRAIILAPTRELAIQIHKDAMVLASMSNLRLGLAYGGEKVEIQRTKLEKGVDILI  139

Query  274  LQEQRVYALHLRRYND-----ALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLL  328
                R      +   D     ++++ +  R  D L  ++D  +       ++  A+ RL 
Sbjct  140  GTTGRTIDFVKQGVIDMGSIQSVVLDEADRMFD-LGFIKDIRYLFR----RMPEAKSRLN  194

Query  329  ALFD----DRKNELAHLATHGPEN----PKLEMLEKILQRQFSSSNSPR-----------  369
             LF      +  ELA    + PE+    P++     I +  F  SN  +           
Sbjct  195  MLFSATLSHKVQELAFEHMNDPESIQIEPEVMTSVNITEELFYPSNQDKILLLLSLIEED  254

Query  370  ----GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQ  425
                 I+F  T+ +   +  +L          +R  LL G         + Q  + +++Q
Sbjct  255  WPDKAIVFANTKHTCEKVWGYL------AGDGLRTGLLTG--------DVPQNKRLKILQ  300

Query  426  KFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVAT  484
            +F DG +++LVAT VA  GL IP  + V  + L  +    V   GR  RA +   A    
Sbjct  301  QFTDGEIDILVATDVAARGLHIPKVSHVFNFDLPDDCEDYVHRIGRTGRAGEKGLAISFA  360

Query  485  EGSRELKRELIN-EALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR-EN  542
                  ++ + N  A+E  ++  +       + +  A +  L    +TK  A    R +N
Sbjct  361  -----CEKYVFNLPAIEEYIKHPIP----CSEYDKNAMLDSLPVMKVTKYKAHPNSRKDN  411

Query  543  QRQ  545
              +
Sbjct  412  YHR  414


 Score = 40.6 bits (93),  Expect = 0.049, Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 39/121 (32%), Gaps = 17/121 (14%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGE---EFRRMLDGR  74
            TG GKT A       HL           +  + ++L     L  Q  +       M + R
Sbjct  55   TGTGKTLAFLPAVFHHLLTNAQPENRRKNQPRAIILAPTRELAIQIHKDAMVLASMSNLR  114

Query  75   WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECH  134
              +    G          L +  D+LI T       +    ++  +++     +V+DE  
Sbjct  115  LGLA--YGGEKVEIQRTKLEKGVDILIGTTGRTIDFV----KQGVIDMGSIQSVVLDEAD  168

Query  135  H  135
             
Sbjct  169  R  169


>sp|Q6LLL5|RHLB_PHOPR ATP-dependent RNA helicase RhlB OS=Photobacterium 
profundum (strain SS9) OX=298386 GN=rhlB PE=3 SV=1
Length=437

 Score = 164 bits (415),  Expect = 4e-43, Method: Composition-based stats.
 Identities = 70/333 (21%), Positives = 121/333 (36%), Gaps = 62/333 (19%)

Query  247  PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND-----ALLIHDTVRAVD  301
             +    +G + YE+Q    +E   +      R+   + +R  D      +++ +  R  D
Sbjct  113  LKAGLAYGGEAYEKQQKVFAEGVDILIGTCGRIIDFYKQRVIDLASIQVVVLDEADRMFD  172

Query  302  ALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPENPKLE-----  352
             L  ++D          ++   + RL  LF      R  ELA    + PE+  +E     
Sbjct  173  -LGFIKDIRFLFR----RMPAPKARLNMLFSATLSYRVKELAFEHMNSPESVVVEPNQKT  227

Query  353  --------------MLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI  398
                             ++LQ         R IIF  T+     +         L   + 
Sbjct  228  GHLIQEELFYPSNQEKMRLLQTLIEEEWPDRAIIFANTKHRCEDIW------GHLAADNH  281

Query  399  RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL  458
            R  LL G         + Q+ +  ++++F  G +++LVAT VA  GL IP    V  Y L
Sbjct  282  RVGLLNG--------DVPQKKRVRILEQFTQGDIDILVATDVAARGLHIPQVTHVYNYDL  333

Query  459  LTNEISMVQARGR-ARADQSV--YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQ  515
              +    V   GR  RA +S    +F   E +  L       A+ET +E  +   +   +
Sbjct  334  PDDAEDYVHRIGRTGRAGESGSSISFACEEYAINLP------AIETYIEHPIPLSKYNSE  387

Query  516  AEYQAKIRDLQQAALTKRAAQA--AQRENQRQQ  546
                A + +L      +R  +    +R N  +Q
Sbjct  388  ----ALLDELPAPLRLQRTPRQGGNRRPNGNRQ  416


 Score = 43.6 bits (101),  Expect = 0.005, Method: Composition-based stats.
 Identities = 21/120 (18%), Positives = 40/120 (33%), Gaps = 15/120 (13%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRML--DGRW  75
            TG GKT A       +L           +  + +++     L  Q   +   +L   G  
Sbjct  55   TGTGKTLAFLTATFNYLLLNPASDERKTNQPRAIIMAPTRELAIQIYNDAAPLLASTGLK  114

Query  76   TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH  135
                  G+   +      A   D+LI T   +        ++  ++L    ++V+DE   
Sbjct  115  AGLAYGGEAYEKQQ-KVFAEGVDILIGTCGRIIDFY----KQRVIDLASIQVVVLDEADR  169


>sp|C6DHF5|RHLB_PECCP ATP-dependent RNA helicase RhlB OS=Pectobacterium 
carotovorum subsp. carotovorum (strain PC1) OX=561230 
GN=rhlB PE=3 SV=1
Length=430

 Score = 162 bits (410),  Expect = 2e-42, Method: Composition-based stats.
 Identities = 68/335 (20%), Positives = 114/335 (34%), Gaps = 56/335 (17%)

Query  243  HLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN-----DALLIHDTV  297
            HL   +L   +G   Y++Q+  L     +      R+     + +        +++ +  
Sbjct  109  HLTGLKLGLAYGGDGYDKQLKVLENGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD  168

Query  298  RAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPENPKLE-  352
            R  D L  ++D          ++  A +RL  LF      R  ELA    +  E  ++E 
Sbjct  169  RMYD-LGFIKDIRWLFR----RMPPAAQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEP  223

Query  353  ------------------MLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQ  394
                                 ++LQ         R IIF  T+     +         L 
Sbjct  224  EQKTGHRIKEELFYPSNEEKMRLLQTLLEEEWPDRCIIFANTKHRCEDIW------GHLA  277

Query  395  TVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV  454
                R  LL G         + Q+ +  ++++F  G L++LVAT VA  GL IP    V 
Sbjct  278  ADGHRVGLLTG--------DVAQKKRLRILEEFTQGNLDILVATDVAARGLHIPSVTHVF  329

Query  455  RYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM  513
             Y L  +    V   GR  RA QS ++         L       A+ET +  ++   +  
Sbjct  330  NYDLPDDCEDYVHRIGRTGRAGQSGFSISLACEEYALN----LPAIETYIGHSIPVSKYN  385

Query  514  DQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFP  548
                  A + DL       R  ++     +    P
Sbjct  386  S----DALMNDLPAPKRLTRPPRSNNGPRRHNNAP  416


 Score = 43.2 bits (100),  Expect = 0.006, Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 45/133 (34%), Gaps = 17/133 (13%)

Query  14   ALEGKNIIIWLPTGAGKTRAAAYVAKRHL---------ETVDGAKVVVLVNRVHLVTQHG  64
            AL G+++     TG GKT  A   +  H             +  + +++     L  Q  
Sbjct  43   ALSGRDVAGQAQTGTGKTL-AFLASTFHYLLSHPANAERQTNQPRALIMAPTRELAVQIH  101

Query  65   EEFR--RMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
             +      L G        GD   +     L    D+LI T   L        ++ H+ L
Sbjct  102  SDAEALSHLTGLKLGLAYGGDGYDKQL-KVLENGVDILIGTTGRLIDY----AKQNHINL  156

Query  123  TVFSLIVVDECHH  135
                ++V+DE   
Sbjct  157  GAIQVVVLDEADR  169


>sp|Q0I1X0|RHLB_HISS1 ATP-dependent RNA helicase RhlB OS=Histophilus 
somni (strain 129Pt) OX=205914 GN=rhlB PE=3 SV=1
Length=419

 Score = 161 bits (408),  Expect = 3e-42, Method: Composition-based stats.
 Identities = 77/350 (22%), Positives = 136/350 (39%), Gaps = 62/350 (18%)

Query  228  PFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR  285
            P  +L+ ++ +  +  ++   L     +G + Y++Q+  + +   +      RV     +
Sbjct  90   PTRELVVQIANDANFLVQATGLKTGLAYGGEGYDKQLKVIDQGIDILIGTTGRVIDYVKQ  149

Query  286  R-----YNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKN  336
                  Y   +++ +  R  D L  ++D  +       +    ++RL  LF      +  
Sbjct  150  GIIRLDYIQVVVLDEADRMFD-LGFIRDIRY----LLRKCPVPQQRLTMLFSATLSYKVR  204

Query  337  ELAHLATHGPENPKLEML----EKILQRQFSSSNSP---------------RGIIFTRTR  377
            ELA    + P+  ++E L     +I +  F  SN                 R IIF+ T+
Sbjct  205  ELAFEHMNDPQYVEIEPLQKTGHRIREELFYPSNQDKMALLMTLLEEEWPERCIIFSNTK  264

Query  378  QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA  437
                 +  +L           R  LL G         + Q+ +  ++++F DGTL++LVA
Sbjct  265  HRCEEIWGYL------SADGHRVGLLTG--------DVMQKKRLSLLKQFTDGTLDILVA  310

Query  438  TSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSV--YAFVATEGSRELKREL  494
            T VA  GL IP    V  Y L  +    V   GR  RA +S    +F   E +  L    
Sbjct  311  TDVAARGLHIPDVTHVFNYDLPDDCEDYVHRIGRTGRAGESGISISFACEEYAINLP---  367

Query  495  INEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQR  544
               A+E  +  ++   Q     + +A I DL      KR A  ++   QR
Sbjct  368  ---AIEEYIGHSIPVSQ----YDAKALIEDLPTPHRIKRGAFDSRSNLQR  410


 Score = 46.7 bits (109),  Expect = 6e-04, Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 52/129 (40%), Gaps = 13/129 (10%)

Query  15   LEGKNIIIWLPTGAGKTRAAAY-------VAKRHLETVDGAKVVVLVNRVHLVTQHGEEF  67
            L+G++I     TG GKT  A         + K ++ + +  + ++L     LV Q   + 
Sbjct  44   LKGQDIAGQAQTGTGKT-IAFLTATFHHLLQKNNINSSEQPRALILAPTRELVVQIANDA  102

Query  68   RRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS  126
              ++      T L+ G  G       + +  D+LI T   +   +    ++  + L    
Sbjct  103  NFLVQATGLKTGLAYGGEGYDKQLKVIDQGIDILIGTTGRVIDYV----KQGIIRLDYIQ  158

Query  127  LIVVDECHH  135
            ++V+DE   
Sbjct  159  VVVLDEADR  167


>sp|B6EPA4|RHLB_ALISL ATP-dependent RNA helicase RhlB OS=Aliivibrio 
salmonicida (strain LFI1238) OX=316275 GN=rhlB PE=3 SV=1
Length=434

 Score = 162 bits (409),  Expect = 3e-42, Method: Composition-based stats.
 Identities = 83/430 (19%), Positives = 142/430 (33%), Gaps = 73/430 (17%)

Query  161  PQVL-GLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYN  219
            PQVL GL A  G    + +      VL    ++              L            
Sbjct  18   PQVLDGLNAK-GFINCTPIQAKALPVLLAGQDIAGQAQTGTGKTLAFLAATFNHLLTTPA  76

Query  220  LCHRRSQDPFGDLL---KKLMDQIHDHLEMP------ELSRKFGTQMYEQQVVKLSEAAA  270
               R+   P   ++   ++L  QI++  E        + +  +G + YE+Q   +     
Sbjct  77   PEGRKITQPRAIIMAPTRELAIQIYNDAESLIASTGLKAALAYGGERYEKQQKVIEAGVD  136

Query  271  LAGLQEQRVYALHLR-----RYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAER  325
            +      R+   + +     +    +++ +  R  D L  ++D          ++     
Sbjct  137  ILIGTTGRIIDFYKQGQIDFKAIQVVVLDEADRMFD-LGFIKDIRF----VFRRMPAPAE  191

Query  326  RLLALFDD----RKNELAHLATHGPENPKLE-------------------MLEKILQRQF  362
            RL  LF      R  ELA      PE+  +E                       +LQ   
Sbjct  192  RLNMLFSATLSYRVQELAFEHMQEPEHVVVEPDQKTGHLITEELFYPSNDHKMALLQTLI  251

Query  363  SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE  422
                  R IIF  T+     +         L     R  LL G         + Q+ ++ 
Sbjct  252  EEEWPDRAIIFANTKHKCELVW------GHLAADKHRVGLLTG--------DVPQKKRER  297

Query  423  VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSV--Y  479
            ++++F  G +++LVAT VA  GL IP    V  + L       V   GR  RA +S    
Sbjct  298  ILEEFTKGEVDILVATDVAARGLHIPQVTHVFNFDLPNEAEDYVHRIGRTGRAGESGNSI  357

Query  480  AFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQ  539
            +F   E +  L       A+E  +E ++         +  A + DL      +R     +
Sbjct  358  SFACEEYAINLP------AIEEYIEHSIPQ----SDYDTSALLEDLPAPIRLQRRPPQNR  407

Query  540  RE--NQRQQF  547
            R   N  Q+ 
Sbjct  408  RNGSNNGQRQ  417


 Score = 39.8 bits (91),  Expect = 0.074, Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 44/140 (31%), Gaps = 17/140 (12%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVH  58
            Q + +   L G++I     TG GKT A       HL          +   + +++     
Sbjct  36   QAKALPVLLAGQDIAGQAQTGTGKTLAFLAATFNHLLTTPAPEGRKITQPRAIIMAPTRE  95

Query  59   LVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPE  115
            L  Q         D    + +         G     +   ++    ++L      +    
Sbjct  96   LAIQ------IYNDAESLIASTGLKAALAYGGERYEKQQKVIEAGVDILIGTTGRIIDFY  149

Query  116  EEEHVELTVFSLIVVDECHH  135
            ++  ++     ++V+DE   
Sbjct  150  KQGQIDFKAIQVVVLDEADR  169


>sp|Q6CZD9|RHLB_PECAS ATP-dependent RNA helicase RhlB OS=Pectobacterium 
atrosepticum (strain SCRI 1043 / ATCC BAA-672) OX=218491 
GN=rhlB PE=3 SV=3
Length=430

 Score = 161 bits (408),  Expect = 4e-42, Method: Composition-based stats.
 Identities = 66/335 (20%), Positives = 114/335 (34%), Gaps = 56/335 (17%)

Query  243  HLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN-----DALLIHDTV  297
            HL   +L   +G   Y++Q+  L     +      R+     + +        +++ +  
Sbjct  109  HLTGLKLGLAYGGDGYDKQLKVLENGVDILVGTTGRLIDYAKQNHINLGAIQVVVLDEAD  168

Query  298  RAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPENPKLE-  352
            R  D L  ++D          ++    +RL  LF      R  ELA    +  E  ++E 
Sbjct  169  RMYD-LGFIKDIRWLFR----RMPATSQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEP  223

Query  353  ------------------MLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQ  394
                                 ++LQ         R IIF  T+     +         L 
Sbjct  224  EQKTGHRITEELFYPSNEEKMRLLQTLLEEEWPDRCIIFANTKHRCEDVW------GHLA  277

Query  395  TVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV  454
                R  LL G         + Q+ +  ++++F  G++++LVAT VA  GL IP    V 
Sbjct  278  ADGHRVGLLTG--------DVAQKKRLRILEEFTQGSIDILVATDVAARGLHIPSVTHVF  329

Query  455  RYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM  513
             Y L  +    V   GR  RA QS ++         L       A+ET +   +     +
Sbjct  330  NYDLPDDCEDYVHRIGRTGRAGQSGFSISLACEEYALN----LPAIETYIGHGIP----L  381

Query  514  DQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFP  548
             +    A + DL       R  ++     +    P
Sbjct  382  SKYNSDALMNDLPAPKRLTRPPRSNNGPRRHNSAP  416


 Score = 44.0 bits (102),  Expect = 0.004, Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 39/121 (32%), Gaps = 17/121 (14%)

Query  26   TGAGKTRAAAYVAKRHL---------ETVDGAKVVVLVNRVHLVTQHGEEFR--RMLDGR  74
            TG GKT  A   +  H             +  + +++     L  Q   +      L G 
Sbjct  55   TGTGKTL-AFLASTFHYLLSHPANAERQTNQPRALIMAPTRELAVQIHSDAEALSHLTGL  113

Query  75   WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECH  134
                   GD   +     L    D+L+ T   L        ++ H+ L    ++V+DE  
Sbjct  114  KLGLAYGGDGYDKQL-KVLENGVDILVGTTGRLIDY----AKQNHINLGAIQVVVLDEAD  168

Query  135  H  135
             
Sbjct  169  R  169


>sp|B4F1V3|RHLB_PROMH ATP-dependent RNA helicase RhlB OS=Proteus 
mirabilis (strain HI4320) OX=529507 GN=rhlB PE=3 SV=1
Length=432

 Score = 161 bits (406),  Expect = 6e-42, Method: Composition-based stats.
 Identities = 68/337 (20%), Positives = 116/337 (34%), Gaps = 60/337 (18%)

Query  248  ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN-----DALLIHDTVRAVDA  302
            ++   +G   Y++Q+  L+    +      R+     + +        +++ +  R  D 
Sbjct  114  KMGLAYGGDGYDEQLKVLNNGVDIVIGTTGRLIDYVKQGHINLNAIQVVVLDEADRMYD-  172

Query  303  LAALQDFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPENPKLE------  352
            L  ++D          ++  A  R+  LF      R  ELA    + PE  ++E      
Sbjct  173  LGFIKDIRWLFR----RMPNAAERMNMLFSATLSYRVRELAFEQMNNPEYVEVEPEQKTG  228

Query  353  -------------MLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIR  399
                            ++LQ         R IIF  T+     +         L     R
Sbjct  229  FSIKEELFYPSNEEKMRLLQTLIEEEWPERCIIFANTKHRCDDIW------AHLAADGHR  282

Query  400  AQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL  459
              LL G         + Q+ +  +++ F  G +++LVAT VA  GL IP    V  Y L 
Sbjct  283  VGLLTG--------DVPQKKRLRILEDFTQGNIDILVATDVAARGLHIPSVTHVFNYDLP  334

Query  460  TNEISMVQARGR-ARADQSV--YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQA  516
             +    V   GR  RA +S    +    E +  L       A+ET ++ A+   +     
Sbjct  335  DDCEDYVHRIGRTGRAGKSGNSISLACEEYALNLP------AIETYIQHAIPVSKYNS--  386

Query  517  EYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQ  553
               A + DL +     R  Q   R N        + Q
Sbjct  387  --DALLTDLPEPKRRHRPRQGQPRRNNSAPRRGNNTQ  421


 Score = 42.5 bits (98),  Expect = 0.010, Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 45/130 (35%), Gaps = 13/130 (10%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA--------KVVVLVNRVHLVTQHGEE  66
            ++G +I     TG GKT A       +L T            + +++     L  Q   +
Sbjct  44   VKGHDIAGQAQTGTGKTLAFLTSTFHYLLTHPAKEGHEKNQPRALIMAPTRELAVQIYTD  103

Query  67   FRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF  125
             + +       +    G  G       L    D++I T   L   +    ++ H+ L   
Sbjct  104  AQPLAQSTGVKMGLAYGGDGYDEQLKVLNNGVDIVIGTTGRLIDYV----KQGHINLNAI  159

Query  126  SLIVVDECHH  135
             ++V+DE   
Sbjct  160  QVVVLDEADR  169


>sp|B0UUZ9|RHLB_HISS2 ATP-dependent RNA helicase RhlB OS=Histophilus 
somni (strain 2336) OX=228400 GN=rhlB PE=3 SV=1
Length=419

 Score = 160 bits (405),  Expect = 8e-42, Method: Composition-based stats.
 Identities = 77/350 (22%), Positives = 135/350 (39%), Gaps = 62/350 (18%)

Query  228  PFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR  285
            P  +L+ ++ +  +  ++   L     +G + Y++Q+  +     +      RV     +
Sbjct  90   PTRELVVQIANDANFLVQATGLKTGLAYGGEGYDKQLKVIDRGIDILIGTTGRVIDYVKQ  149

Query  286  R-----YNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKN  336
                  Y   +++ +  R  D L  ++D  +       +    ++RL  LF      +  
Sbjct  150  GIIRLDYIQVVVLDEADRMFD-LGFIRDIRY----LLRKCPVPQQRLTMLFSATLSYKVR  204

Query  337  ELAHLATHGPENPKLEML----EKILQRQFSSSNSP---------------RGIIFTRTR  377
            ELA    + P+  ++E L     +I +  F  SN                 R IIF+ T+
Sbjct  205  ELAFEHMNDPQYVEIEPLQKTGHRIREELFYPSNQDKMALLMTLLEEEWPERCIIFSNTK  264

Query  378  QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA  437
                 +  +L           R  LL G         + Q+ +  ++++F DGTL++LVA
Sbjct  265  HRCEEIWGYL------SADGHRVGLLTG--------DVMQKKRLSLLKQFTDGTLDVLVA  310

Query  438  TSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSV--YAFVATEGSRELKREL  494
            T VA  GL IP    V  Y L  +    V   GR  RA +S    +F   E +  L    
Sbjct  311  TDVAARGLHIPDVTHVFNYDLPDDCEDYVHRIGRTGRAGESGISISFACEEYAINLP---  367

Query  495  INEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQR  544
               A+E  +  ++   Q     + +A I DL      KR A  ++   QR
Sbjct  368  ---AIEEYIGHSIPVSQ----YDAKALIEDLPTPHRIKRGAFDSRSNLQR  410


 Score = 47.1 bits (110),  Expect = 4e-04, Method: Composition-based stats.
 Identities = 27/129 (21%), Positives = 52/129 (40%), Gaps = 13/129 (10%)

Query  15   LEGKNIIIWLPTGAGKTRAAAY-------VAKRHLETVDGAKVVVLVNRVHLVTQHGEEF  67
            L+G++I     TG GKT  A         + K ++ + +  + ++L     LV Q   + 
Sbjct  44   LKGQDIAGQAQTGTGKT-IAFLTATFHHLLQKNNINSSEQPRALILAPTRELVVQIANDA  102

Query  68   RRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS  126
              ++      T L+ G  G       + R  D+LI T   +   +    ++  + L    
Sbjct  103  NFLVQATGLKTGLAYGGEGYDKQLKVIDRGIDILIGTTGRVIDYV----KQGIIRLDYIQ  158

Query  127  LIVVDECHH  135
            ++V+DE   
Sbjct  159  VVVLDEADR  167


>sp|Q088J2|RHLB_SHEFN ATP-dependent RNA helicase RhlB OS=Shewanella 
frigidimarina (strain NCIMB 400) OX=318167 GN=rhlB PE=3 
SV=1
Length=434

 Score = 160 bits (404),  Expect = 1e-41, Method: Composition-based stats.
 Identities = 65/318 (20%), Positives = 118/318 (37%), Gaps = 60/318 (19%)

Query  253  FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR-----RYNDALLIHDTVRAVDALAALQ  307
            +G + YE Q   L +   +      R+     +      +  A+++ +  R  D L  ++
Sbjct  119  YGGESYETQRAVLDKGVDILIGTTGRIIDYVRQGVISLSHIQAVVLDEADRMFD-LGFIK  177

Query  308  DFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPENPKLEMLE--------  355
            D          ++  A+ RL  LF      +  ELA+   + PE  ++E LE        
Sbjct  178  DIRFLFR----RMPDAKSRLNMLFSATLSMKVQELAYDHMNDPEKVEIEPLEKTSKNIKE  233

Query  356  -----------KILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI  404
                       ++L          + I+F+ T+ S   L  +L      +    R  LL 
Sbjct  234  EIFYPSMEDKMRLLLSLIEEDWPDKAIVFSNTKHSCEKLWSYL------EGDGHRVGLLT  287

Query  405  GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
            G         + Q+ +  ++++F  G +++LVAT VA  GL I   + V  Y L  +   
Sbjct  288  G--------DVPQKKRIRILEQFTSGEIDVLVATDVAARGLHISDVSHVYNYDLPDDCED  339

Query  465  MVQARGR-ARADQSV--YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK  521
             V   GR  RA Q     +F   E +  L        +ET +  ++     +   +  A 
Sbjct  340  YVHRIGRTGRAGQKGISISFACEEYALNLPE------IETYINHSIP----VSNYDKDAL  389

Query  522  IRDLQQAALTKRAAQAAQ  539
            + D+   A   R    ++
Sbjct  390  LDDIPPPARIHRKPPTSR  407


 Score = 42.5 bits (98),  Expect = 0.010, Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 37/121 (31%), Gaps = 17/121 (14%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQ---HGEEFRRMLDGR  74
            TG GKT A       HL              + +++     L  Q     +        +
Sbjct  55   TGTGKTMAFLVATFNHLLNVAAPESRKATEPRAIIMAPTRELAIQIAKDAKLLAAHTGLK  114

Query  75   WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECH  134
              V  + G          L +  D+LI T   +   +     +  + L+    +V+DE  
Sbjct  115  --VGIVYGGESYETQRAVLDKGVDILIGTTGRIIDYV----RQGVISLSHIQAVVLDEAD  168

Query  135  H  135
             
Sbjct  169  R  169


>sp|A0KS84|RHLB_SHESA ATP-dependent RNA helicase RhlB OS=Shewanella 
sp. (strain ANA-3) OX=94122 GN=rhlB PE=3 SV=1
Length=439

 Score = 159 bits (401),  Expect = 4e-41, Method: Composition-based stats.
 Identities = 65/332 (20%), Positives = 118/332 (36%), Gaps = 60/332 (18%)

Query  245  EMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR-----YNDALLIHDTVRA  299
               ++   +G + Y+ Q   L +   +      R+     +         A+++ +  R 
Sbjct  111  SHLKVGIVYGGESYDVQRKTLDQGVDILIGTTGRIIDYVRQGIINLGGIQAVVLDEADRM  170

Query  300  VDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPE--------  347
             D L  ++D          ++  A++RL  LF      +  ELA+   + P         
Sbjct  171  FD-LGFIKDIRFLFR----RMPSADQRLNMLFSATLSMKVQELAYDHMNEPVKVEIAPEE  225

Query  348  -----------NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTV  396
                        P  E   ++L          + I+F+ T+ S  +L  WL      +  
Sbjct  226  KTSKNIKEEIFYPSQEDKMRLLLTLIEEDWPEKAIVFSNTKHSCENLWSWL------EGD  279

Query  397  DIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY  456
              R  LL G         + Q+ +  ++++F  G L++LVAT VA  GL I   + V  Y
Sbjct  280  GHRVGLLTG--------DVPQKKRIRILEQFTQGQLDILVATDVAARGLHISDVSHVYNY  331

Query  457  GLLTNEISMVQARGR-ARADQSV--YAFVATEGSRELKRELINEALETLMEQAVAAVQKM  513
             L  +    V   GR  RA       +F   E +  L       A+ET +  ++     +
Sbjct  332  DLPDDCEDYVHRIGRTGRAGNKGVSVSFACEEYALNLP------AIETYINHSIP----V  381

Query  514  DQAEYQAKIRDLQQAALTKRAAQAAQRENQRQ  545
               +  A + D+       R   A  R  + +
Sbjct  382  SNYDRDALLEDIPPPVKIHRRHPAGARNLRER  413


 Score = 44.4 bits (103),  Expect = 0.003, Method: Composition-based stats.
 Identities = 33/212 (16%), Positives = 62/212 (29%), Gaps = 19/212 (9%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGE-EFRRMLDGRWT  76
            TG GKT A       HL          ++  + +++     L  Q  +            
Sbjct  55   TGTGKTMAFLVATFNHLLSTPVPENRQLNQPRAIIMAPTRELAIQIAKDAILLAKHSHLK  114

Query  77   VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHT  136
            V  + G          L +  D+LI T   +   +     +  + L     +V+DE    
Sbjct  115  VGIVYGGESYDVQRKTLDQGVDILIGTTGRIIDYV----RQGIINLGGIQAVVLDEADR-  169

Query  137  HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWC  196
              D  +   +           Q L  +   T S         + A +H+ +         
Sbjct  170  MFDLGFIKDIRFLFRRMPSADQRLNMLFSATLS-----MKVQELAYDHMNEPVKVEIAPE  224

Query  197  IMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
              + +N   ++   SQ+   +  L       P
Sbjct  225  EKTSKNIKEEIFYPSQEDKMRLLLTLIEEDWP  256


>sp|A6VKC3|RHLB_ACTSZ ATP-dependent RNA helicase RhlB OS=Actinobacillus 
succinogenes (strain ATCC 55618 / DSM 22257 / CCUG 
43843 / 130Z) OX=339671 GN=rhlB PE=3 SV=1
Length=413

 Score = 158 bits (398),  Expect = 5e-41, Method: Composition-based stats.
 Identities = 75/369 (20%), Positives = 129/369 (35%), Gaps = 62/369 (17%)

Query  211  SQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELS--RKFGTQMYEQQVVKLSEA  268
            + QP    N        P  +L  ++        +  +L     +G   Y++Q+  +   
Sbjct  73   THQPDFITNQPRALILAPTRELAVQIAHDAESLAQTTKLRIALAYGGDGYDKQLKTIENG  132

Query  269  AALAGLQEQRVYAL---HLRRYNDA--LLIHDTVRAVDALAALQDFYHREHVTKTQILCA  323
              +      RV       + R+ND   +++ +  R  D L  ++D  +       +    
Sbjct  133  VDILIGTTGRVIDYVKQGIIRFNDIQVVVLDEADRMFD-LGFIKDIRY----LLRKCPAP  187

Query  324  ERRLLALFDD----RKNELAHLATHGPENPKLEMLEK-------------------ILQR  360
            + RL  LF      +  ELA    + PE  ++E L+K                   +L  
Sbjct  188  KSRLTMLFSATLSYKVRELAFEDMNDPEYIEIEPLQKTGHRIKEELFYPSNRDKMALLMT  247

Query  361  QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ  420
                    R IIF  T+     +  +L           R  LL G         + Q+ +
Sbjct  248  LLEEEWPERCIIFANTKHRCEEIWGYL------AADGQRVGLLTG--------DVAQKKR  293

Query  421  QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSV-  478
              ++++F DG L++LVAT VA  GL IP    V  Y L  +    V   GR  RA +S  
Sbjct  294  LALLKQFTDGELDILVATDVAARGLHIPDVTHVFNYDLPDDREDYVHRIGRTGRAGESGM  353

Query  479  -YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQA  537
              +F   + +  L       A+E  +   +   Q     +  + I DL +    KR    
Sbjct  354  SISFACEQYAMNLP------AIEEYIGHHIPVSQ----YDPDSLINDLPKPYRIKRNHTI  403

Query  538  AQRENQRQQ  546
                   ++
Sbjct  404  PHSSRDYKK  412


 Score = 41.3 bits (95),  Expect = 0.026, Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 38/117 (32%), Gaps = 11/117 (9%)

Query  26   TGAGKTRAAAYVAKRHL------ETVDGAKVVVLVNRVHLVTQHGEEFRRML-DGRWTVT  78
            TG GKT A       HL         +  + ++L     L  Q   +   +    +  + 
Sbjct  55   TGTGKTMAFLTATFHHLLTHQPDFITNQPRALILAPTRELAVQIAHDAESLAQTTKLRIA  114

Query  79   TLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH  135
               G  G       +    D+LI T   +   +    ++  +      ++V+DE   
Sbjct  115  LAYGGDGYDKQLKTIENGVDILIGTTGRVIDYV----KQGIIRFNDIQVVVLDEADR  167


>sp|B1JQ11|RHLB_YERPY ATP-dependent RNA helicase RhlB OS=Yersinia 
pseudotuberculosis serotype O:3 (strain YPIII) OX=502800 
GN=rhlB PE=3 SV=1
Length=428

 Score = 158 bits (399),  Expect = 5e-41, Method: Composition-based stats.
 Identities = 68/331 (21%), Positives = 114/331 (34%), Gaps = 58/331 (18%)

Query  247  PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN-----DALLIHDTVRAVD  301
             +L   +G   Y++Q+  L     +      R+     + Y        +++ +  R  D
Sbjct  113  LKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYD  172

Query  302  ALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPENPKLEML---  354
             L  ++D          ++   ++RL  LF      R  ELA    +  E  ++E L   
Sbjct  173  -LGFIKDIRWLFR----RMPSVDKRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPLQKT  227

Query  355  -EKILQRQFSSSNS---------------PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI  398
              +I +  F  SN                 R IIF  T+     +         L     
Sbjct  228  GHRIKEELFYPSNEEKMRLLQTLIEEEWPDRCIIFANTKHRCEEIW------GHLAADGH  281

Query  399  RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL  458
            R  LL G         + Q+ +  +++ F  G L++LVAT VA  GL IP    V  Y L
Sbjct  282  RVGLLTG--------DVAQKKRLRILEDFTKGDLDILVATDVAARGLHIPLVTHVFNYDL  333

Query  459  LTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAE  517
              +    V   GR  RA +S ++         L       A+ET    ++   +      
Sbjct  334  PDDCEDYVHRIGRTGRAGESGHSISLACEEYALN----LPAIETYTGHSIPVSKYNS---  386

Query  518  YQAKIRDLQQAALTKRAAQAA--QRENQRQQ  546
              A + DL       R       +R +  ++
Sbjct  387  -DALLTDLPAPKRLARTRTGNGPRRNSAPRR  416


 Score = 44.4 bits (103),  Expect = 0.003, Method: Composition-based stats.
 Identities = 19/121 (16%), Positives = 37/121 (31%), Gaps = 17/121 (14%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV  77
            TG GKT A       +L           +  + +++     L  Q         D     
Sbjct  55   TGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRALIMAPTRELAVQ------IHSDAESLS  108

Query  78   TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH  134
                  +G   G     +   +L    ++L      L    ++ ++ L    ++V+DE  
Sbjct  109  QVTGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEAD  168

Query  135  H  135
             
Sbjct  169  R  169


>sp|Q66G19|RHLB_YERPS ATP-dependent RNA helicase RhlB OS=Yersinia 
pseudotuberculosis serotype I (strain IP32953) OX=273123 
GN=rhlB PE=3 SV=1
Length=428

 Score = 158 bits (399),  Expect = 5e-41, Method: Composition-based stats.
 Identities = 68/331 (21%), Positives = 114/331 (34%), Gaps = 58/331 (18%)

Query  247  PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN-----DALLIHDTVRAVD  301
             +L   +G   Y++Q+  L     +      R+     + Y        +++ +  R  D
Sbjct  113  LKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYD  172

Query  302  ALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPENPKLEML---  354
             L  ++D          ++   ++RL  LF      R  ELA    +  E  ++E L   
Sbjct  173  -LGFIKDIRWLFR----RMPSVDKRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPLQKT  227

Query  355  -EKILQRQFSSSNS---------------PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI  398
              +I +  F  SN                 R IIF  T+     +         L     
Sbjct  228  GHRIKEELFYPSNEEKMRLLQTLIEEEWPDRCIIFANTKHRCEEIW------GHLAADGH  281

Query  399  RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL  458
            R  LL G         + Q+ +  +++ F  G L++LVAT VA  GL IP    V  Y L
Sbjct  282  RVGLLTG--------DVAQKKRLRILEDFTKGDLDILVATDVAARGLHIPLVTHVFNYDL  333

Query  459  LTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAE  517
              +    V   GR  RA +S ++         L       A+ET    ++   +      
Sbjct  334  PDDCEDYVHRIGRTGRAGESGHSISLACEEYALN----LPAIETYTGHSIPVSKYNS---  386

Query  518  YQAKIRDLQQAALTKRAAQAA--QRENQRQQ  546
              A + DL       R       +R +  ++
Sbjct  387  -DALLTDLPAPKRLARTRTGNGPRRNSAPRR  416


 Score = 44.4 bits (103),  Expect = 0.003, Method: Composition-based stats.
 Identities = 19/121 (16%), Positives = 37/121 (31%), Gaps = 17/121 (14%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV  77
            TG GKT A       +L           +  + +++     L  Q         D     
Sbjct  55   TGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRALIMAPTRELAVQ------IHSDAESLS  108

Query  78   TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH  134
                  +G   G     +   +L    ++L      L    ++ ++ L    ++V+DE  
Sbjct  109  QVTGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEAD  168

Query  135  H  135
             
Sbjct  169  R  169


>sp|A4TRC8|RHLB_YERPP ATP-dependent RNA helicase RhlB OS=Yersinia 
pestis (strain Pestoides F) OX=386656 GN=rhlB PE=3 SV=1
Length=428

 Score = 158 bits (399),  Expect = 5e-41, Method: Composition-based stats.
 Identities = 68/331 (21%), Positives = 114/331 (34%), Gaps = 58/331 (18%)

Query  247  PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN-----DALLIHDTVRAVD  301
             +L   +G   Y++Q+  L     +      R+     + Y        +++ +  R  D
Sbjct  113  LKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYD  172

Query  302  ALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPENPKLEML---  354
             L  ++D          ++   ++RL  LF      R  ELA    +  E  ++E L   
Sbjct  173  -LGFIKDIRWLFR----RMPSVDKRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPLQKT  227

Query  355  -EKILQRQFSSSNS---------------PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI  398
              +I +  F  SN                 R IIF  T+     +         L     
Sbjct  228  GHRIKEELFYPSNEEKMRLLQTLIEEEWPDRCIIFANTKHRCEEIW------GHLAADGH  281

Query  399  RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL  458
            R  LL G         + Q+ +  +++ F  G L++LVAT VA  GL IP    V  Y L
Sbjct  282  RVGLLTG--------DVAQKKRLRILEDFTKGDLDILVATDVAARGLHIPLVTHVFNYDL  333

Query  459  LTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAE  517
              +    V   GR  RA +S ++         L       A+ET    ++   +      
Sbjct  334  PDDCEDYVHRIGRTGRAGESGHSISLACEEYALN----LPAIETYTGHSIPVSKYNS---  386

Query  518  YQAKIRDLQQAALTKRAAQAA--QRENQRQQ  546
              A + DL       R       +R +  ++
Sbjct  387  -DALLTDLPAPKRLARTRTGNGPRRNSAPRR  416


 Score = 44.4 bits (103),  Expect = 0.003, Method: Composition-based stats.
 Identities = 19/121 (16%), Positives = 37/121 (31%), Gaps = 17/121 (14%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV  77
            TG GKT A       +L           +  + +++     L  Q         D     
Sbjct  55   TGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRALIMAPTRELAVQ------IHSDAESLS  108

Query  78   TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH  134
                  +G   G     +   +L    ++L      L    ++ ++ L    ++V+DE  
Sbjct  109  QVTGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEAD  168

Query  135  H  135
             
Sbjct  169  R  169


>sp|Q1CNK3|RHLB_YERPN ATP-dependent RNA helicase RhlB OS=Yersinia 
pestis bv. Antiqua (strain Nepal516) OX=377628 GN=rhlB PE=3 
SV=1
Length=428

 Score = 158 bits (399),  Expect = 5e-41, Method: Composition-based stats.
 Identities = 68/331 (21%), Positives = 114/331 (34%), Gaps = 58/331 (18%)

Query  247  PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN-----DALLIHDTVRAVD  301
             +L   +G   Y++Q+  L     +      R+     + Y        +++ +  R  D
Sbjct  113  LKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYD  172

Query  302  ALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPENPKLEML---  354
             L  ++D          ++   ++RL  LF      R  ELA    +  E  ++E L   
Sbjct  173  -LGFIKDIRWLFR----RMPSVDKRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPLQKT  227

Query  355  -EKILQRQFSSSNS---------------PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI  398
              +I +  F  SN                 R IIF  T+     +         L     
Sbjct  228  GHRIKEELFYPSNEEKMRLLQTLIEEEWPDRCIIFANTKHRCEEIW------GHLAADGH  281

Query  399  RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL  458
            R  LL G         + Q+ +  +++ F  G L++LVAT VA  GL IP    V  Y L
Sbjct  282  RVGLLTG--------DVAQKKRLRILEDFTKGDLDILVATDVAARGLHIPLVTHVFNYDL  333

Query  459  LTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAE  517
              +    V   GR  RA +S ++         L       A+ET    ++   +      
Sbjct  334  PDDCEDYVHRIGRTGRAGESGHSISLACEEYALN----LPAIETYTGHSIPVSKYNS---  386

Query  518  YQAKIRDLQQAALTKRAAQAA--QRENQRQQ  546
              A + DL       R       +R +  ++
Sbjct  387  -DALLTDLPAPKRLARTRTGNGPRRNSAPRR  416


 Score = 44.4 bits (103),  Expect = 0.003, Method: Composition-based stats.
 Identities = 19/121 (16%), Positives = 37/121 (31%), Gaps = 17/121 (14%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV  77
            TG GKT A       +L           +  + +++     L  Q         D     
Sbjct  55   TGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRALIMAPTRELAVQ------IHSDAESLS  108

Query  78   TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH  134
                  +G   G     +   +L    ++L      L    ++ ++ L    ++V+DE  
Sbjct  109  QVTGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEAD  168

Query  135  H  135
             
Sbjct  169  R  169


>sp|Q8ZAD8|RHLB_YERPE ATP-dependent RNA helicase RhlB OS=Yersinia 
pestis OX=632 GN=rhlB PE=3 SV=1
Length=428

 Score = 158 bits (399),  Expect = 5e-41, Method: Composition-based stats.
 Identities = 68/331 (21%), Positives = 114/331 (34%), Gaps = 58/331 (18%)

Query  247  PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN-----DALLIHDTVRAVD  301
             +L   +G   Y++Q+  L     +      R+     + Y        +++ +  R  D
Sbjct  113  LKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYD  172

Query  302  ALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPENPKLEML---  354
             L  ++D          ++   ++RL  LF      R  ELA    +  E  ++E L   
Sbjct  173  -LGFIKDIRWLFR----RMPSVDKRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPLQKT  227

Query  355  -EKILQRQFSSSNS---------------PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI  398
              +I +  F  SN                 R IIF  T+     +         L     
Sbjct  228  GHRIKEELFYPSNEEKMRLLQTLIEEEWPDRCIIFANTKHRCEEIW------GHLAADGH  281

Query  399  RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL  458
            R  LL G         + Q+ +  +++ F  G L++LVAT VA  GL IP    V  Y L
Sbjct  282  RVGLLTG--------DVAQKKRLRILEDFTKGDLDILVATDVAARGLHIPLVTHVFNYDL  333

Query  459  LTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAE  517
              +    V   GR  RA +S ++         L       A+ET    ++   +      
Sbjct  334  PDDCEDYVHRIGRTGRAGESGHSISLACEEYALN----LPAIETYTGHSIPVSKYNS---  386

Query  518  YQAKIRDLQQAALTKRAAQAA--QRENQRQQ  546
              A + DL       R       +R +  ++
Sbjct  387  -DALLTDLPAPKRLARTRTGNGPRRNSAPRR  416


 Score = 44.4 bits (103),  Expect = 0.003, Method: Composition-based stats.
 Identities = 19/121 (16%), Positives = 37/121 (31%), Gaps = 17/121 (14%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV  77
            TG GKT A       +L           +  + +++     L  Q         D     
Sbjct  55   TGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRALIMAPTRELAVQ------IHSDAESLS  108

Query  78   TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH  134
                  +G   G     +   +L    ++L      L    ++ ++ L    ++V+DE  
Sbjct  109  QVTGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEAD  168

Query  135  H  135
             
Sbjct  169  R  169


>sp|B2K046|RHLB_YERPB ATP-dependent RNA helicase RhlB OS=Yersinia 
pseudotuberculosis serotype IB (strain PB1/+) OX=502801 
GN=rhlB PE=3 SV=1
Length=428

 Score = 158 bits (399),  Expect = 5e-41, Method: Composition-based stats.
 Identities = 68/331 (21%), Positives = 114/331 (34%), Gaps = 58/331 (18%)

Query  247  PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN-----DALLIHDTVRAVD  301
             +L   +G   Y++Q+  L     +      R+     + Y        +++ +  R  D
Sbjct  113  LKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYD  172

Query  302  ALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPENPKLEML---  354
             L  ++D          ++   ++RL  LF      R  ELA    +  E  ++E L   
Sbjct  173  -LGFIKDIRWLFR----RMPSVDKRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPLQKT  227

Query  355  -EKILQRQFSSSNS---------------PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI  398
              +I +  F  SN                 R IIF  T+     +         L     
Sbjct  228  GHRIKEELFYPSNEEKMRLLQTLIEEEWPDRCIIFANTKHRCEEIW------GHLAADGH  281

Query  399  RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL  458
            R  LL G         + Q+ +  +++ F  G L++LVAT VA  GL IP    V  Y L
Sbjct  282  RVGLLTG--------DVAQKKRLRILEDFTKGDLDILVATDVAARGLHIPLVTHVFNYDL  333

Query  459  LTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAE  517
              +    V   GR  RA +S ++         L       A+ET    ++   +      
Sbjct  334  PDDCEDYVHRIGRTGRAGESGHSISLACEEYALN----LPAIETYTGHSIPVSKYNS---  386

Query  518  YQAKIRDLQQAALTKRAAQAA--QRENQRQQ  546
              A + DL       R       +R +  ++
Sbjct  387  -DALLTDLPAPKRLARTRTGNGPRRNSAPRR  416


 Score = 44.4 bits (103),  Expect = 0.003, Method: Composition-based stats.
 Identities = 19/121 (16%), Positives = 37/121 (31%), Gaps = 17/121 (14%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV  77
            TG GKT A       +L           +  + +++     L  Q         D     
Sbjct  55   TGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRALIMAPTRELAVQ------IHSDAESLS  108

Query  78   TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH  134
                  +G   G     +   +L    ++L      L    ++ ++ L    ++V+DE  
Sbjct  109  QVTGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEAD  168

Query  135  H  135
             
Sbjct  169  R  169


>sp|Q1CBQ4|RHLB_YERPA ATP-dependent RNA helicase RhlB OS=Yersinia 
pestis bv. Antiqua (strain Antiqua) OX=360102 GN=rhlB PE=3 
SV=1
Length=428

 Score = 158 bits (399),  Expect = 5e-41, Method: Composition-based stats.
 Identities = 68/331 (21%), Positives = 114/331 (34%), Gaps = 58/331 (18%)

Query  247  PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN-----DALLIHDTVRAVD  301
             +L   +G   Y++Q+  L     +      R+     + Y        +++ +  R  D
Sbjct  113  LKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYD  172

Query  302  ALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPENPKLEML---  354
             L  ++D          ++   ++RL  LF      R  ELA    +  E  ++E L   
Sbjct  173  -LGFIKDIRWLFR----RMPSVDKRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPLQKT  227

Query  355  -EKILQRQFSSSNS---------------PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI  398
              +I +  F  SN                 R IIF  T+     +         L     
Sbjct  228  GHRIKEELFYPSNEEKMRLLQTLIEEEWPDRCIIFANTKHRCEEIW------GHLAADGH  281

Query  399  RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL  458
            R  LL G         + Q+ +  +++ F  G L++LVAT VA  GL IP    V  Y L
Sbjct  282  RVGLLTG--------DVAQKKRLRILEDFTKGDLDILVATDVAARGLHIPLVTHVFNYDL  333

Query  459  LTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAE  517
              +    V   GR  RA +S ++         L       A+ET    ++   +      
Sbjct  334  PDDCEDYVHRIGRTGRAGESGHSISLACEEYALN----LPAIETYTGHSIPVSKYNS---  386

Query  518  YQAKIRDLQQAALTKRAAQAA--QRENQRQQ  546
              A + DL       R       +R +  ++
Sbjct  387  -DALLTDLPAPKRLARTRTGNGPRRNSAPRR  416


 Score = 44.4 bits (103),  Expect = 0.003, Method: Composition-based stats.
 Identities = 19/121 (16%), Positives = 37/121 (31%), Gaps = 17/121 (14%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV  77
            TG GKT A       +L           +  + +++     L  Q         D     
Sbjct  55   TGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRALIMAPTRELAVQ------IHSDAESLS  108

Query  78   TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH  134
                  +G   G     +   +L    ++L      L    ++ ++ L    ++V+DE  
Sbjct  109  QVTGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEAD  168

Query  135  H  135
             
Sbjct  169  R  169


>sp|A7FD47|RHLB_YERP3 ATP-dependent RNA helicase RhlB OS=Yersinia 
pseudotuberculosis serotype O:1b (strain IP 31758) OX=349747 
GN=rhlB PE=3 SV=1
Length=428

 Score = 158 bits (399),  Expect = 5e-41, Method: Composition-based stats.
 Identities = 68/331 (21%), Positives = 114/331 (34%), Gaps = 58/331 (18%)

Query  247  PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN-----DALLIHDTVRAVD  301
             +L   +G   Y++Q+  L     +      R+     + Y        +++ +  R  D
Sbjct  113  LKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYD  172

Query  302  ALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPENPKLEML---  354
             L  ++D          ++   ++RL  LF      R  ELA    +  E  ++E L   
Sbjct  173  -LGFIKDIRWLFR----RMPSVDKRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPLQKT  227

Query  355  -EKILQRQFSSSNS---------------PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI  398
              +I +  F  SN                 R IIF  T+     +         L     
Sbjct  228  GHRIKEELFYPSNEEKMRLLQTLIEEEWPDRCIIFANTKHRCEEIW------GHLAADGH  281

Query  399  RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL  458
            R  LL G         + Q+ +  +++ F  G L++LVAT VA  GL IP    V  Y L
Sbjct  282  RVGLLTG--------DVAQKKRLRILEDFTKGDLDILVATDVAARGLHIPLVTHVFNYDL  333

Query  459  LTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAE  517
              +    V   GR  RA +S ++         L       A+ET    ++   +      
Sbjct  334  PDDCEDYVHRIGRTGRAGESGHSISLACEEYALN----LPAIETYTGHSIPVSKYNS---  386

Query  518  YQAKIRDLQQAALTKRAAQAA--QRENQRQQ  546
              A + DL       R       +R +  ++
Sbjct  387  -DALLTDLPAPKRLARTRTGNGPRRNSAPRR  416


 Score = 44.4 bits (103),  Expect = 0.003, Method: Composition-based stats.
 Identities = 19/121 (16%), Positives = 37/121 (31%), Gaps = 17/121 (14%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV  77
            TG GKT A       +L           +  + +++     L  Q         D     
Sbjct  55   TGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRALIMAPTRELAVQ------IHSDAESLS  108

Query  78   TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH  134
                  +G   G     +   +L    ++L      L    ++ ++ L    ++V+DE  
Sbjct  109  QVTGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEAD  168

Query  135  H  135
             
Sbjct  169  R  169


>sp|Q7MYL2|RHLB_PHOLL ATP-dependent RNA helicase RhlB OS=Photorhabdus 
laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 
/ TT01) OX=243265 GN=rhlB PE=3 SV=1
Length=428

 Score = 158 bits (399),  Expect = 5e-41, Method: Composition-based stats.
 Identities = 70/379 (18%), Positives = 128/379 (34%), Gaps = 61/379 (16%)

Query  207  LQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVK  264
            L  H     +Q N        P  +L  ++     D  +    ++   +G   Y++Q+  
Sbjct  71   LLTHPAAEERQTNQPRALIMAPTRELAVQIYSDAEDLAQATGLKMGLAYGGDGYDKQLKI  130

Query  265  LSEAAALAGLQEQRVYALHLRRY-----NDALLIHDTVRAVDALAALQDFYHREHVTKTQ  319
            L     +      R+     + +        +++ +  R  D L  ++D          +
Sbjct  131  LESGVDILIGTTGRLIDYTKQGHINLNAVQVVVLDEADRMYD-LGFIKDIRWLFR----R  185

Query  320  ILCAERRLLALFDD----RKNELAHLATHGPENPKLEMLE-------------------K  356
            +     R+  LF      R  ELA    +  E  ++E L+                   +
Sbjct  186  MPPVNERMNLLFSATLSYRVRELAFEQMNHAEYIEVEPLQKTGHRIREELFYPSNEEKMR  245

Query  357  ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT  416
            +LQ         R IIF  T+     +         L     R  LL G         + 
Sbjct  246  LLQTLLEEEWPDRCIIFANTKHRCEDIW------AHLAADGHRVGLLTG--------DVA  291

Query  417  QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARAD  475
            Q+ +  ++++F +G +++LVAT VA  GL IP    V  Y L  +    V   GR  RA 
Sbjct  292  QKKRLRILEEFSNGNIDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAG  351

Query  476  QSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAA  535
            +S ++         L       A+E  ++ ++   +       QA ++DL       R+ 
Sbjct  352  ESGHSISLACEEYALN----LPAIEDYIQHSIPVSKYNS----QALLKDLPAPKRRYRSR  403

Query  536  QAAQ--REN-QRQQFPVEH  551
                  R N   +     +
Sbjct  404  SGNHQRRNNLSHRNNTPRN  422


 Score = 44.0 bits (102),  Expect = 0.004, Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 37/122 (30%), Gaps = 19/122 (16%)

Query  26   TGAGKTRAAAYVAKRHL---------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWT  76
            TG GKT  A   +  H             +  + +++     L  Q         D    
Sbjct  55   TGTGKTL-AFLASAFHYLLTHPAAEERQTNQPRALIMAPTRELAVQ------IYSDAEDL  107

Query  77   VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDEC  133
                   MG   G     +   +L    ++L      L    ++ H+ L    ++V+DE 
Sbjct  108  AQATGLKMGLAYGGDGYDKQLKILESGVDILIGTTGRLIDYTKQGHINLNAVQVVVLDEA  167

Query  134  HH  135
              
Sbjct  168  DR  169


>sp|Q0HQL1|RHLB_SHESR ATP-dependent RNA helicase RhlB OS=Shewanella 
sp. (strain MR-7) OX=60481 GN=rhlB PE=3 SV=1
Length=439

 Score = 158 bits (400),  Expect = 5e-41, Method: Composition-based stats.
 Identities = 64/324 (20%), Positives = 116/324 (36%), Gaps = 60/324 (19%)

Query  253  FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR-----RYNDALLIHDTVRAVDALAALQ  307
            +G + Y+ Q   L +   +      R+     +         A+++ +  R  D L  ++
Sbjct  119  YGGESYDVQRKVLDQGVDILIGTTGRIIDYVRQGIISLNAIQAVVLDEADRMFD-LGFIK  177

Query  308  DFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPE----------------  347
            D          ++  A++RL  LF      +  ELA+   + P                 
Sbjct  178  DIRFLFR----RMPNADQRLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSKNIKE  233

Query  348  ---NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI  404
                P  E   ++L          + I+F+ T+ S  +L  WL      +    R  LL 
Sbjct  234  EIFYPSQEDKIRLLLTLIEEDWPEKAIVFSNTKHSCENLWSWL------EGDGHRVGLLT  287

Query  405  GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
            G         + Q+ +  ++++F  G L++LVAT VA  GL I   + V  Y L  +   
Sbjct  288  G--------DVPQKKRIRILEQFTQGQLDILVATDVAARGLHISDVSHVYNYDLPDDCED  339

Query  465  MVQARGR-ARADQSV--YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK  521
             V   GR  RA       +F   E +  L       A+E+ +  ++     +   +  A 
Sbjct  340  YVHRIGRTGRAGNKGVSVSFACEEYALNLP------AIESYINHSIP----VSNYDRDAL  389

Query  522  IRDLQQAALTKRAAQAAQRENQRQ  545
            + D+       R   A  R  + +
Sbjct  390  LDDIPPPVKIHRKHPAGARNLRER  413


 Score = 44.0 bits (102),  Expect = 0.004, Method: Composition-based stats.
 Identities = 21/119 (18%), Positives = 37/119 (31%), Gaps = 13/119 (11%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGE-EFRRMLDGRWT  76
            TG GKT A       HL          ++  + +++     L  Q  +            
Sbjct  55   TGTGKTMAFLVATFNHLLSTPIPENRQLNQPRAIIMAPTRELAIQIAKDAILLAKHTHLK  114

Query  77   VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH  135
            V  + G          L +  D+LI T   +   +     +  + L     +V+DE   
Sbjct  115  VGIVYGGESYDVQRKVLDQGVDILIGTTGRIIDYV----RQGIISLNAIQAVVLDEADR  169


>sp|Q0HN76|RHLB_SHESM ATP-dependent RNA helicase RhlB OS=Shewanella 
sp. (strain MR-4) OX=60480 GN=rhlB PE=3 SV=1
Length=439

 Score = 158 bits (400),  Expect = 5e-41, Method: Composition-based stats.
 Identities = 64/324 (20%), Positives = 116/324 (36%), Gaps = 60/324 (19%)

Query  253  FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR-----RYNDALLIHDTVRAVDALAALQ  307
            +G + Y+ Q   L +   +      R+     +         A+++ +  R  D L  ++
Sbjct  119  YGGESYDVQRKVLDQGVDILIGTTGRIIDYVRQGIISLNAIQAVVLDEADRMFD-LGFIK  177

Query  308  DFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPE----------------  347
            D          ++  A++RL  LF      +  ELA+   + P                 
Sbjct  178  DIRFLFR----RMPNADQRLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSKNIKE  233

Query  348  ---NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI  404
                P  E   ++L          + I+F+ T+ S  +L  WL      +    R  LL 
Sbjct  234  EIFYPSQEDKIRLLLTLIEEDWPEKAIVFSNTKHSCENLWSWL------EGDGHRVGLLT  287

Query  405  GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
            G         + Q+ +  ++++F  G L++LVAT VA  GL I   + V  Y L  +   
Sbjct  288  G--------DVPQKKRIRILEQFTQGQLDILVATDVAARGLHISDVSHVYNYDLPDDCED  339

Query  465  MVQARGR-ARADQSV--YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK  521
             V   GR  RA       +F   E +  L       A+E+ +  ++     +   +  A 
Sbjct  340  YVHRIGRTGRAGNKGVSVSFACEEYALNLP------AIESYINHSIP----VSNYDRDAL  389

Query  522  IRDLQQAALTKRAAQAAQRENQRQ  545
            + D+       R   A  R  + +
Sbjct  390  LDDIPPPVKIHRKHPAGARNLRER  413


 Score = 44.0 bits (102),  Expect = 0.004, Method: Composition-based stats.
 Identities = 21/119 (18%), Positives = 37/119 (31%), Gaps = 13/119 (11%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGE-EFRRMLDGRWT  76
            TG GKT A       HL          ++  + +++     L  Q  +            
Sbjct  55   TGTGKTMAFLVATFNHLLSTPIPENRQLNQPRAIIMAPTRELAIQIAKDAILLAKHTHLK  114

Query  77   VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH  135
            V  + G          L +  D+LI T   +   +     +  + L     +V+DE   
Sbjct  115  VGIVYGGESYDVQRKVLDQGVDILIGTTGRIIDYV----RQGIISLNAIQAVVLDEADR  169


>sp|Q8EJQ5|RHLB_SHEON ATP-dependent RNA helicase RhlB OS=Shewanella 
oneidensis (strain ATCC 700550 / JCM 31522 / CIP 106686 
/ LMG 19005 / NCIMB 14063 / MR-1) OX=211586 GN=rhlB PE=3 SV=1
Length=439

 Score = 158 bits (399),  Expect = 7e-41, Method: Composition-based stats.
 Identities = 65/324 (20%), Positives = 116/324 (36%), Gaps = 60/324 (19%)

Query  253  FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR-----RYNDALLIHDTVRAVDALAALQ  307
            +G + Y+ Q   L +   +      R+     +         A+++ +  R  D L  ++
Sbjct  119  YGGESYDVQRKVLDQGVDILIGTTGRIIDYVRQGIINLNAIQAVVLDEADRMFD-LGFIK  177

Query  308  DFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPE----------------  347
            D          ++  A++RL  LF      +  ELA+   + P                 
Sbjct  178  DIRFLFR----RMPNADQRLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSKNIKE  233

Query  348  ---NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI  404
                P  E   ++L          + I+F+ T+ S  +L  WL      +    R  LL 
Sbjct  234  EIFYPSQEDKMRLLLTLIEEDWPEKAIVFSNTKHSCENLWSWL------EGDGHRVGLLT  287

Query  405  GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
            G         + Q+ +  ++++F  G L++LVAT VA  GL I   + V  Y L  +   
Sbjct  288  G--------DVPQKKRIRILEQFTQGQLDILVATDVAARGLHISDVSHVYNYDLPDDCED  339

Query  465  MVQARGR-ARADQSV--YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK  521
             V   GR  RA       +F   E +  L       A+ET +  ++     +   +  A 
Sbjct  340  YVHRIGRTGRAGNKGVSVSFACEEYALNLP------AIETYINHSIP----VSNYDRDAL  389

Query  522  IRDLQQAALTKRAAQAAQRENQRQ  545
            + D+       R   A  R  + +
Sbjct  390  LDDIPSPVKIHRKHPAGARNLRER  413


 Score = 44.4 bits (103),  Expect = 0.003, Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 38/119 (32%), Gaps = 13/119 (11%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGE-EFRRMLDGRWT  76
            TG GKT A       HL          ++  + +++     L  Q  +         R  
Sbjct  55   TGTGKTMAFLVATFNHLLSSSIPEGRQLNQPRAIIMAPTRELAIQIAKDAILLAKHTRLK  114

Query  77   VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH  135
            V  + G          L +  D+LI T   +   +     +  + L     +V+DE   
Sbjct  115  VGIVYGGESYDVQRKVLDQGVDILIGTTGRIIDYV----RQGIINLNAIQAVVLDEADR  169


>sp|B0TJ29|RHLB_SHEHH ATP-dependent RNA helicase RhlB OS=Shewanella 
halifaxensis (strain HAW-EB4) OX=458817 GN=rhlB PE=3 SV=1
Length=436

 Score = 156 bits (395),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 65/324 (20%), Positives = 117/324 (36%), Gaps = 60/324 (19%)

Query  253  FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR-----RYNDALLIHDTVRAVDALAALQ  307
            +G + YE Q   L +   +      R+     +         A+++ +  R  D L  ++
Sbjct  119  YGGEGYEVQRKVLDKGVDILIGTTGRIIDYVRQGVINVSCIQAVVLDEADRMFD-LGFIK  177

Query  308  DFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPE----------------  347
            D          ++  A+ RL  LF      +  ELA+   + PE                
Sbjct  178  DIRFLFR----RMPDAKSRLNMLFSATLSMKVQELAYDHMNEPEKVEIAPNEKTSKNIKE  233

Query  348  ---NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI  404
                P +E    +L          + I+F+ T+ S   +  WL      +    RA LL 
Sbjct  234  EIFYPSMEEKMPLLLSLLEEDWPEKAIVFSNTKHSCEKVWSWL------EGDGHRAGLLT  287

Query  405  GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
            G         + Q+ +  ++++F  G +++LVAT VA  GL I   + V  Y L  +   
Sbjct  288  G--------DVPQKKRLRILEQFTKGEIDILVATDVAARGLHIADVSHVYNYDLPDDCED  339

Query  465  MVQARGR-ARADQSV--YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK  521
             V   GR  RA Q     +F   E +  L       A+E+ ++ ++     +   +  A 
Sbjct  340  YVHRIGRTGRAGQKGISVSFACEEYALNLP------AIESYIQHSIP----VTSYDSDAL  389

Query  522  IRDLQQAALTKRAAQAAQRENQRQ  545
            + D+       R      R  + +
Sbjct  390  LDDIPPPVRIHRKPSTHTRNTRDR  413


 Score = 45.2 bits (105),  Expect = 0.002, Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 40/121 (33%), Gaps = 17/121 (14%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQ---HGEEFRRMLDGR  74
            TG GKT A       HL          ++  + +++     L  Q         +    +
Sbjct  55   TGTGKTLAFLVATFNHLLSTPIPAERQLNQPRAIIMAPTRELAIQIAKDANLLAKHTGLK  114

Query  75   WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECH  134
              V  + G  G       L +  D+LI T   +   +     +  + ++    +V+DE  
Sbjct  115  --VGIVYGGEGYEVQRKVLDKGVDILIGTTGRIIDYV----RQGVINVSCIQAVVLDEAD  168

Query  135  H  135
             
Sbjct  169  R  169


>sp|A1RFB3|RHLB_SHESW ATP-dependent RNA helicase RhlB OS=Shewanella 
sp. (strain W3-18-1) OX=351745 GN=rhlB PE=3 SV=1
Length=439

 Score = 156 bits (395),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 64/325 (20%), Positives = 115/325 (35%), Gaps = 60/325 (18%)

Query  253  FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR-----YNDALLIHDTVRAVDALAALQ  307
            +G + Y+ Q   L +   +      R+     +         A+++ +  R  D L  ++
Sbjct  119  YGGESYDVQRKVLDQGVDILIGTTGRIIDYVRQGIISLTAIQAVVLDEADRMFD-LGFIK  177

Query  308  DFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPE----------------  347
            D          ++  A +RL  LF      +  ELA+   + P                 
Sbjct  178  DIRFLFR----RMPDANQRLNMLFSATLSMKVQELAYDHMNDPVKVDIAPDEKTSKNIKE  233

Query  348  ---NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI  404
                P  E   ++L          + I+F+ T+ S  +L  WL      +    R  LL 
Sbjct  234  EVFYPSQEDKMRLLLTLIEEDWPEKAIVFSNTKHSCENLWSWL------EGDGHRVGLLT  287

Query  405  GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
            G         + Q+ +  ++++F  G L++LVAT VA  GL I   + V  Y L  +   
Sbjct  288  G--------DVPQKKRIRILEQFTSGQLDILVATDVAARGLHISDVSHVYNYDLPDDCED  339

Query  465  MVQARGR-ARADQSV--YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK  521
             V   GR  RA       +F   E +  L       A+E+ +  ++     +   +  A 
Sbjct  340  YVHRIGRTGRAGNKGVSISFACEEYALNLP------AIESYINHSIP----VSNYDSSAL  389

Query  522  IRDLQQAALTKRAAQAAQRENQRQQ  546
            + D+       R   A  R  + + 
Sbjct  390  LEDIPAPVKIPRKHPAGTRNLRERA  414


 Score = 45.2 bits (105),  Expect = 0.001, Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 39/119 (33%), Gaps = 13/119 (11%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGE-EFRRMLDGRWT  76
            TG GKT A       HL          ++  + +++     L  Q  +         R  
Sbjct  55   TGTGKTMAFLVATFNHLLSTPIPEGRQINQPRAIIMAPTRELAIQIAKDAILLAKHTRLK  114

Query  77   VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH  135
            V  + G          L +  D+LI T   +   +     +  + LT    +V+DE   
Sbjct  115  VGIVYGGESYDVQRKVLDQGVDILIGTTGRIIDYV----RQGIISLTAIQAVVLDEADR  169


>sp|A4YB09|RHLB_SHEPC ATP-dependent RNA helicase RhlB OS=Shewanella 
putrefaciens (strain CN-32 / ATCC BAA-453) OX=319224 GN=rhlB 
PE=3 SV=1
Length=439

 Score = 156 bits (395),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 64/325 (20%), Positives = 115/325 (35%), Gaps = 60/325 (18%)

Query  253  FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR-----YNDALLIHDTVRAVDALAALQ  307
            +G + Y+ Q   L +   +      R+     +         A+++ +  R  D L  ++
Sbjct  119  YGGESYDVQRKVLDQGVDILIGTTGRIIDYVRQGIISLTAIQAVVLDEADRMFD-LGFIK  177

Query  308  DFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPE----------------  347
            D          ++  A +RL  LF      +  ELA+   + P                 
Sbjct  178  DIRFLFR----RMPDANQRLNMLFSATLSMKVQELAYDHMNDPVKVDIAPDEKTSKNIKE  233

Query  348  ---NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI  404
                P  E   ++L          + I+F+ T+ S  +L  WL      +    R  LL 
Sbjct  234  EVFYPSQEDKMRLLLTLIEEDWPEKAIVFSNTKHSCENLWSWL------EGDGHRVGLLT  287

Query  405  GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
            G         + Q+ +  ++++F  G L++LVAT VA  GL I   + V  Y L  +   
Sbjct  288  G--------DVPQKKRIRILEQFTSGQLDILVATDVAARGLHISDVSHVYNYDLPDDCED  339

Query  465  MVQARGR-ARADQSV--YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK  521
             V   GR  RA       +F   E +  L       A+E+ +  ++     +   +  A 
Sbjct  340  YVHRIGRTGRAGNKGVSISFACEEYALNLP------AIESYINHSIP----VSNYDSSAL  389

Query  522  IRDLQQAALTKRAAQAAQRENQRQQ  546
            + D+       R   A  R  + + 
Sbjct  390  LEDIPAPVKIPRKHPAGTRNLRERA  414


 Score = 45.2 bits (105),  Expect = 0.001, Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 39/119 (33%), Gaps = 13/119 (11%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGE-EFRRMLDGRWT  76
            TG GKT A       HL          ++  + +++     L  Q  +         R  
Sbjct  55   TGTGKTMAFLVATFNHLLSTPIPEGRQINQPRAIIMAPTRELAIQIAKDAILLAKHTRLK  114

Query  77   VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH  135
            V  + G          L +  D+LI T   +   +     +  + LT    +V+DE   
Sbjct  115  VGIVYGGESYDVQRKVLDQGVDILIGTTGRIIDYV----RQGIISLTAIQAVVLDEADR  169


>sp|A8GZJ0|RHLB_SHEPA ATP-dependent RNA helicase RhlB OS=Shewanella 
pealeana (strain ATCC 700345 / ANG-SQ1) OX=398579 GN=rhlB 
PE=3 SV=1
Length=436

 Score = 156 bits (395),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 65/324 (20%), Positives = 117/324 (36%), Gaps = 60/324 (19%)

Query  253  FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR-----RYNDALLIHDTVRAVDALAALQ  307
            +G + YE Q   L +   +      R+     +         A+++ +  R  D L  ++
Sbjct  119  YGGEGYEVQRKVLDKGVDILIGTTGRIIDYVRQGVINVSCIQAVVLDEADRMFD-LGFIK  177

Query  308  DFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPE----------------  347
            D          ++  A+ RL  LF      +  ELA+   + PE                
Sbjct  178  DIRFLFR----RMPDAKSRLNMLFSATLSMKVQELAYDHMNEPEKVEIAPNEKTSKNIKE  233

Query  348  ---NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI  404
                P +E    +L          + I+F+ T+ S   +  WL      +    RA LL 
Sbjct  234  EIFYPSMEEKMPLLLSLLEEDWPEKAIVFSNTKHSCEKVWSWL------EGDGHRAGLLT  287

Query  405  GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
            G         + Q+ +  ++++F  G +++LVAT VA  GL I   + V  Y L  +   
Sbjct  288  G--------DVPQKKRLRILEQFTKGDIDILVATDVAARGLHISDVSHVYNYDLPDDCED  339

Query  465  MVQARGR-ARADQSV--YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK  521
             V   GR  RA Q     +F   E +  L       A+E+ ++ ++     +   +  A 
Sbjct  340  YVHRIGRTGRAGQKGVSVSFACEEYALNLP------AIESYIQHSIP----VTSYDSDAL  389

Query  522  IRDLQQAALTKRAAQAAQRENQRQ  545
            + D+       R      R  + +
Sbjct  390  LDDIPPPVRIHRKPSTHTRNTRDR  413


 Score = 45.2 bits (105),  Expect = 0.002, Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 40/121 (33%), Gaps = 17/121 (14%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQ---HGEEFRRMLDGR  74
            TG GKT A       HL          ++  + +++     L  Q         +    +
Sbjct  55   TGTGKTLAFLVATFNHLLSTPIPAERQLNQPRAIIMAPTRELAIQIAKDANLLAKHTGLK  114

Query  75   WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECH  134
              V  + G  G       L +  D+LI T   +   +     +  + ++    +V+DE  
Sbjct  115  --VGIVYGGEGYEVQRKVLDKGVDILIGTTGRIIDYV----RQGVINVSCIQAVVLDEAD  168

Query  135  H  135
             
Sbjct  169  R  169


>sp|B2VG58|RHLB_ERWT9 ATP-dependent RNA helicase RhlB OS=Erwinia 
tasmaniensis (strain DSM 17950 / CFBP 7177 / CIP 109463 / 
NCPPB 4357 / Et1/99) OX=465817 GN=rhlB PE=3 SV=1
Length=430

 Score = 156 bits (394),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 64/332 (19%), Positives = 108/332 (33%), Gaps = 60/332 (18%)

Query  247  PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN-----DALLIHDTVRAVD  301
             +L   +G   Y++Q+  L     +      R+     + +        +++ +  R  D
Sbjct  113  LKLGLAYGGDGYDKQLKVLENGVDVLIGTTGRLIDYAKQNHVNLGAIQVVVLDEADRMFD  172

Query  302  ALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPENPKLE----M  353
             L  ++D          ++  A +RL  LF      R  ELA    +  E  ++E     
Sbjct  173  -LGFIKDIRWLFR----RMPAANQRLNMLFSATLSFRVRELAFENMNNAEYVEVEPDQKT  227

Query  354  LEKILQRQFSSSNS---------------PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI  398
              +I +  F  SN                 R IIF  T+     +         L     
Sbjct  228  GHRIKEELFYPSNEEKMRLLQTLIEEEWPDRTIIFANTKHRCEDVW------GHLAADGH  281

Query  399  RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL  458
            R  LL G         + Q+ +  ++  F  G +++LVAT VA  GL IP    V  Y L
Sbjct  282  RVGLLTG--------DVAQKKRLRILDDFTKGDVDILVATDVAARGLHIPAVTHVFNYDL  333

Query  459  LTNEISMVQAR---GRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQ  515
              +    V      GRA A+    +    E +  L       A+E  +  ++     + +
Sbjct  334  PDDREDYVHRIGRTGRAGANGHSISLACEEYALNLP------AIEEYIGHSI----TVSR  383

Query  516  AEYQAKIRDLQQAALTKRAAQAAQRENQRQQF  547
                A + DL       R              
Sbjct  384  YNSDALMTDLPPPKRLTRNRSGNGPRRGGNNN  415


 Score = 44.0 bits (102),  Expect = 0.004, Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 38/119 (32%), Gaps = 13/119 (11%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRML-DGRWT  76
            TG GKT A       HL           +  + ++L     L  Q   +   +       
Sbjct  55   TGTGKTMAFLTSTFHHLLSHPAPEGRQTNQPRALILAPTRELAVQIHADAEPLAQITGLK  114

Query  77   VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH  135
            +    G  G       L    D+LI T   L        ++ HV L    ++V+DE   
Sbjct  115  LGLAYGGDGYDKQLKVLENGVDVLIGTTGRLIDY----AKQNHVNLGAIQVVVLDEADR  169


>sp|B8CHZ1|RHLB_SHEPW ATP-dependent RNA helicase RhlB OS=Shewanella 
piezotolerans (strain WP3 / JCM 13877) OX=225849 GN=rhlB 
PE=3 SV=1
Length=437

 Score = 156 bits (395),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 65/324 (20%), Positives = 120/324 (37%), Gaps = 60/324 (19%)

Query  253  FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND-----ALLIHDTVRAVDALAALQ  307
            +G + YE Q   L +   +      R+     +   D     A+++ +  R  D L  ++
Sbjct  119  YGGEGYEAQRKVLDKGIDILIGTTGRIIDYVRQGVIDVSAIQAVVLDEADRMFD-LGFIK  177

Query  308  DFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPE----------------  347
            D          ++  A+ RL  LF      +  ELA+   + PE                
Sbjct  178  DIRFLFR----RMPDAKSRLNMLFSATLSMKVQELAYDHMNEPEKVEIAPNEKTSKNIKE  233

Query  348  ---NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI  404
                P +E    +L          + I+F+ T+ S   +  WL      +    R  LL 
Sbjct  234  EIFYPSMEEKMPLLLSLLEEDWPEKAIVFSNTKHSCEKVWSWL------EGDGHRVGLLT  287

Query  405  GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
            G         + Q+ +  ++++F  G +++LVAT VA  GL I   + V  Y L  +   
Sbjct  288  G--------DVPQKKRLRILEQFTSGDIDVLVATDVAARGLHIADVSHVYNYDLPDDCED  339

Query  465  MVQARGR-ARADQSV--YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK  521
             V   GR  RA Q     +F   E +  L       A+E+ ++ ++     +   + +A 
Sbjct  340  YVHRIGRTGRAGQKGVSVSFACEEYALNLP------AIESYIQHSIP----VTSYDSEAL  389

Query  522  IRDLQQAALTKRAAQAAQRENQRQ  545
            + D+       R   +  R ++ +
Sbjct  390  LDDIPAPKRIHRKPSSHSRNSRDR  413


 Score = 45.9 bits (107),  Expect = 0.001, Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 42/121 (35%), Gaps = 17/121 (14%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQ---HGEEFRRMLDGR  74
            TG GKT A       HL          ++  + +++     L  Q         +    +
Sbjct  55   TGTGKTLAFLVATFNHLLTEAAPTERKINQPRAIIMAPTRELAIQIAKDANLLAKHTGLK  114

Query  75   WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECH  134
              V  + G  G  A    L +  D+LI T   +   +     +  ++++    +V+DE  
Sbjct  115  --VGIVYGGEGYEAQRKVLDKGIDILIGTTGRIIDYV----RQGVIDVSAIQAVVLDEAD  168

Query  135  H  135
             
Sbjct  169  R  169


>sp|C4K8M8|RHLB_HAMD5 ATP-dependent RNA helicase RhlB OS=Hamiltonella 
defensa subsp. Acyrthosiphon pisum (strain 5AT) OX=572265 
GN=rhlB PE=3 SV=1
Length=422

 Score = 156 bits (394),  Expect = 3e-40, Method: Composition-based stats.
 Identities = 73/338 (22%), Positives = 119/338 (35%), Gaps = 60/338 (18%)

Query  243  HLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN-----DALLIHDTV  297
                 ++   +G   Y++Q+  L     +      R+     + +        +++ +  
Sbjct  109  QFTSLKMGLAYGGDGYDKQLKILESGVDILIGTPGRIIDYAKQNFIHLNALQVIVLDEAD  168

Query  298  RAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPENPKLEM  353
            R  D L  ++D          ++  AE+RL  LF      R  EL+    + PE  ++E 
Sbjct  169  RMYD-LGFIKDIRWLFR----RMPPAEKRLNMLFSATLSYRVRELSFEQMNHPEYIEVEP  223

Query  354  LEKI----LQRQFSSSNSP---------------RGIIFTRTRQSAHSLLLWLQQQQGLQ  394
            L+KI     +  F  SN                 R IIF  T+Q    +         L 
Sbjct  224  LQKIGSQIQEELFYPSNEDKMRLLQTLIEEEWPDRCIIFANTKQRCEDIW------GHLV  277

Query  395  TVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV  454
                R  LL G         + QR + +++  F  G L++LVAT VA  GL IP    V 
Sbjct  278  ADGHRVGLLTG--------DVAQRKRIQILDDFSKGYLDILVATDVAARGLHIPKVTHVF  329

Query  455  RYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQK  512
             Y L  N    +   GR  RA +  Y+  +A E             +E      +     
Sbjct  330  NYDLPENVEDYIHRIGRTGRAGEKGYSISLACEAFASHL-----STIEACTGHRIPT---  381

Query  513  MDQAEYQAKIRDLQQAALTKRAAQ--AAQRENQRQQFP  548
              +   +A + DL Q    +R  +  A  R     + P
Sbjct  382  -SEYNKEALLTDLPQPKRLQRHHRHYAGSRNQGASRKP  418


 Score = 43.2 bits (100),  Expect = 0.007, Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 43/132 (33%), Gaps = 17/132 (13%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEE  66
            L G+++     TG GKT A       +L           +  + +++V    L  Q    
Sbjct  44   LAGRDVAAQAQTGTGKTLAFLASVFNYLLTNAADETRQCEQPRALIMVPTRELAIQ----  99

Query  67   FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELT  123
                 D        S  MG   G     +   +L    ++L      +    ++  + L 
Sbjct  100  --IYTDAETLSQFTSLKMGLAYGGDGYDKQLKILESGVDILIGTPGRIIDYAKQNFIHLN  157

Query  124  VFSLIVVDECHH  135
               +IV+DE   
Sbjct  158  ALQVIVLDEADR  169


>sp|A8G828|RHLB_SERP5 ATP-dependent RNA helicase RhlB OS=Serratia 
proteamaculans (strain 568) OX=399741 GN=rhlB PE=3 SV=1
Length=428

 Score = 156 bits (394),  Expect = 3e-40, Method: Composition-based stats.
 Identities = 67/331 (20%), Positives = 113/331 (34%), Gaps = 58/331 (18%)

Query  247  PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND-----ALLIHDTVRAVD  301
             ++   +G   Y++Q+  L     +      R+     + Y D      +++ +  R  D
Sbjct  113  LKMGLAYGGDGYDKQLKVLESGVDILVGTTGRLIDYAKQNYIDLGAIQVVVLDEADRMYD  172

Query  302  ALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPEN----PKLEM  353
             L  ++D          ++   ++RL  LF      R  ELA    +  E     P+ + 
Sbjct  173  -LGFIKDIRWLFR----RMPAVDQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKT  227

Query  354  LEKILQRQFSSSNS---------------PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI  398
              +I +  F  SN                 R IIF  T+     +         L     
Sbjct  228  GHRIKEELFYPSNEEKMRLLQTLIEEEWPDRCIIFANTKHRCEDVW------GHLAADGH  281

Query  399  RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL  458
            R  LL G         + Q+ +  ++  F  G L++LVAT VA  GL IP    V  Y L
Sbjct  282  RVGLLTG--------DVAQKKRLRILDDFTKGNLDILVATDVAARGLHIPLVTHVFNYDL  333

Query  459  LTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAE  517
              +    V   GR  RA +S ++         L       A+ET    ++   +      
Sbjct  334  PDDCEDYVHRIGRTGRAGESGHSISLACEEYALN----LPAIETYTGHSIPVSKYNS---  386

Query  518  YQAKIRDLQQAALTKRAAQAA--QRENQRQQ  546
              A + DL       R       +R +  ++
Sbjct  387  -DALLSDLPAPKRLARPRGGNGPRRNSAPRR  416


 Score = 46.3 bits (108),  Expect = 6e-04, Method: Composition-based stats.
 Identities = 20/121 (17%), Positives = 40/121 (33%), Gaps = 17/121 (14%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV  77
            TG GKT A       +L          ++  + +++     L  Q         D     
Sbjct  55   TGTGKTLAFLTSTFHYLLSHPAKQDRKINQPRALIMAPTRELAVQ------IHSDAEALS  108

Query  78   TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH  134
             +    MG   G     +   +L    ++L      L    ++ +++L    ++V+DE  
Sbjct  109  QSTGLKMGLAYGGDGYDKQLKVLESGVDILVGTTGRLIDYAKQNYIDLGAIQVVVLDEAD  168

Query  135  H  135
             
Sbjct  169  R  169


>sp|P0A2P0|RHLB_SALTY ATP-dependent RNA helicase RhlB OS=Salmonella 
typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 
GN=rhlB PE=3 SV=2
Length=421

 Score = 155 bits (392),  Expect = 4e-40, Method: Composition-based stats.
 Identities = 75/401 (19%), Positives = 130/401 (32%), Gaps = 58/401 (14%)

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
            +P    A  L  A   V           +    +    L  H     ++ N        P
Sbjct  33   TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAP  92

Query  229  FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR  286
              +L  ++        +    +L   +G   Y++Q+  L     +      R+     + 
Sbjct  93   TRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN  152

Query  287  YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE  337
            +        +++ +  R  D L  ++D          ++  A +RL  LF      R  E
Sbjct  153  HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPAAQRLNMLFSATLSYRVRE  207

Query  338  LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ  378
            LA    +  E     P+ +   +I +  F  SN                 R IIF  T+ 
Sbjct  208  LAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH  267

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT  438
                +         L     R  LL G         + Q+ +  ++ +F  G L++LVAT
Sbjct  268  RCEDIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT  313

Query  439  SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE  497
             VA  GL IP    V  Y L  +    V   GR  RA  S ++         L       
Sbjct  314  DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP  369

Query  498  ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA  538
            A+E+ +  ++   +   +    A + DL +     R+    
Sbjct  370  AIESYIGHSIPVSKYNPE----ALMNDLPKPLRLTRSRPGN  406


 Score = 43.6 bits (101),  Expect = 0.005, Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV  77
            TG GKT A       +L          V+  + +++     L  Q         D     
Sbjct  55   TGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQ------IHADAEPLA  108

Query  78   TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH  134
                  +G   G     +   +L    ++L      L    ++ H+ L    ++V+DE  
Sbjct  109  QATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD  168

Query  135  H  135
             
Sbjct  169  R  169


>sp|P0A2P1|RHLB_SALTI ATP-dependent RNA helicase RhlB OS=Salmonella 
typhi OX=90370 GN=rhlB PE=3 SV=2
Length=421

 Score = 155 bits (392),  Expect = 4e-40, Method: Composition-based stats.
 Identities = 75/401 (19%), Positives = 130/401 (32%), Gaps = 58/401 (14%)

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
            +P    A  L  A   V           +    +    L  H     ++ N        P
Sbjct  33   TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAP  92

Query  229  FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR  286
              +L  ++        +    +L   +G   Y++Q+  L     +      R+     + 
Sbjct  93   TRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN  152

Query  287  YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE  337
            +        +++ +  R  D L  ++D          ++  A +RL  LF      R  E
Sbjct  153  HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPAAQRLNMLFSATLSYRVRE  207

Query  338  LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ  378
            LA    +  E     P+ +   +I +  F  SN                 R IIF  T+ 
Sbjct  208  LAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH  267

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT  438
                +         L     R  LL G         + Q+ +  ++ +F  G L++LVAT
Sbjct  268  RCEDIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT  313

Query  439  SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE  497
             VA  GL IP    V  Y L  +    V   GR  RA  S ++         L       
Sbjct  314  DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP  369

Query  498  ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA  538
            A+E+ +  ++   +   +    A + DL +     R+    
Sbjct  370  AIESYIGHSIPVSKYNPE----ALMNDLPKPLRLTRSRPGN  406


 Score = 43.6 bits (101),  Expect = 0.005, Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV  77
            TG GKT A       +L          V+  + +++     L  Q         D     
Sbjct  55   TGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQ------IHADAEPLA  108

Query  78   TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH  134
                  +G   G     +   +L    ++L      L    ++ H+ L    ++V+DE  
Sbjct  109  QATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD  168

Query  135  H  135
             
Sbjct  169  R  169


>sp|B4TNT3|RHLB_SALSV ATP-dependent RNA helicase RhlB OS=Salmonella 
schwarzengrund (strain CVM19633) OX=439843 GN=rhlB PE=3 
SV=1
Length=421

 Score = 155 bits (392),  Expect = 4e-40, Method: Composition-based stats.
 Identities = 75/401 (19%), Positives = 130/401 (32%), Gaps = 58/401 (14%)

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
            +P    A  L  A   V           +    +    L  H     ++ N        P
Sbjct  33   TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAP  92

Query  229  FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR  286
              +L  ++        +    +L   +G   Y++Q+  L     +      R+     + 
Sbjct  93   TRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN  152

Query  287  YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE  337
            +        +++ +  R  D L  ++D          ++  A +RL  LF      R  E
Sbjct  153  HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPAAQRLNMLFSATLSYRVRE  207

Query  338  LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ  378
            LA    +  E     P+ +   +I +  F  SN                 R IIF  T+ 
Sbjct  208  LAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH  267

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT  438
                +         L     R  LL G         + Q+ +  ++ +F  G L++LVAT
Sbjct  268  RCEDIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT  313

Query  439  SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE  497
             VA  GL IP    V  Y L  +    V   GR  RA  S ++         L       
Sbjct  314  DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP  369

Query  498  ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA  538
            A+E+ +  ++   +   +    A + DL +     R+    
Sbjct  370  AIESYIGHSIPVSKYNPE----ALMNDLPKPLRLTRSRPGN  406


 Score = 43.6 bits (101),  Expect = 0.005, Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV  77
            TG GKT A       +L          V+  + +++     L  Q         D     
Sbjct  55   TGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQ------IHADAEPLA  108

Query  78   TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH  134
                  +G   G     +   +L    ++L      L    ++ H+ L    ++V+DE  
Sbjct  109  QATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD  168

Query  135  H  135
             
Sbjct  169  R  169


>sp|C0Q2V9|RHLB_SALPC ATP-dependent RNA helicase RhlB OS=Salmonella 
paratyphi C (strain RKS4594) OX=476213 GN=rhlB PE=3 SV=1
Length=421

 Score = 155 bits (392),  Expect = 4e-40, Method: Composition-based stats.
 Identities = 75/401 (19%), Positives = 130/401 (32%), Gaps = 58/401 (14%)

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
            +P    A  L  A   V           +    +    L  H     ++ N        P
Sbjct  33   TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAP  92

Query  229  FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR  286
              +L  ++        +    +L   +G   Y++Q+  L     +      R+     + 
Sbjct  93   TRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN  152

Query  287  YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE  337
            +        +++ +  R  D L  ++D          ++  A +RL  LF      R  E
Sbjct  153  HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPAAQRLNMLFSATLSYRVRE  207

Query  338  LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ  378
            LA    +  E     P+ +   +I +  F  SN                 R IIF  T+ 
Sbjct  208  LAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH  267

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT  438
                +         L     R  LL G         + Q+ +  ++ +F  G L++LVAT
Sbjct  268  RCEDIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT  313

Query  439  SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE  497
             VA  GL IP    V  Y L  +    V   GR  RA  S ++         L       
Sbjct  314  DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP  369

Query  498  ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA  538
            A+E+ +  ++   +   +    A + DL +     R+    
Sbjct  370  AIESYIGHSIPVSKYNPE----ALMNDLPKPLRLTRSRPGN  406


 Score = 43.6 bits (101),  Expect = 0.005, Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV  77
            TG GKT A       +L          V+  + +++     L  Q         D     
Sbjct  55   TGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQ------IHADAEPLA  108

Query  78   TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH  134
                  +G   G     +   +L    ++L      L    ++ H+ L    ++V+DE  
Sbjct  109  QATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD  168

Query  135  H  135
             
Sbjct  169  R  169


>sp|A9MXF3|RHLB_SALPB ATP-dependent RNA helicase RhlB OS=Salmonella 
paratyphi B (strain ATCC BAA-1250 / SPB7) OX=1016998 GN=rhlB 
PE=3 SV=1
Length=421

 Score = 155 bits (392),  Expect = 4e-40, Method: Composition-based stats.
 Identities = 75/401 (19%), Positives = 130/401 (32%), Gaps = 58/401 (14%)

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
            +P    A  L  A   V           +    +    L  H     ++ N        P
Sbjct  33   TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAP  92

Query  229  FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR  286
              +L  ++        +    +L   +G   Y++Q+  L     +      R+     + 
Sbjct  93   TRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN  152

Query  287  YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE  337
            +        +++ +  R  D L  ++D          ++  A +RL  LF      R  E
Sbjct  153  HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPAAQRLNMLFSATLSYRVRE  207

Query  338  LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ  378
            LA    +  E     P+ +   +I +  F  SN                 R IIF  T+ 
Sbjct  208  LAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH  267

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT  438
                +         L     R  LL G         + Q+ +  ++ +F  G L++LVAT
Sbjct  268  RCEDIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT  313

Query  439  SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE  497
             VA  GL IP    V  Y L  +    V   GR  RA  S ++         L       
Sbjct  314  DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP  369

Query  498  ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA  538
            A+E+ +  ++   +   +    A + DL +     R+    
Sbjct  370  AIESYIGHSIPVSKYNPE----ALMNDLPKPLRLTRSRPGN  406


 Score = 43.6 bits (101),  Expect = 0.005, Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV  77
            TG GKT A       +L          V+  + +++     L  Q         D     
Sbjct  55   TGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQ------IHADAEPLA  108

Query  78   TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH  134
                  +G   G     +   +L    ++L      L    ++ H+ L    ++V+DE  
Sbjct  109  QATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD  168

Query  135  H  135
             
Sbjct  169  R  169


>sp|B4SZ26|RHLB_SALNS ATP-dependent RNA helicase RhlB OS=Salmonella 
newport (strain SL254) OX=423368 GN=rhlB PE=3 SV=1
Length=421

 Score = 155 bits (392),  Expect = 4e-40, Method: Composition-based stats.
 Identities = 75/401 (19%), Positives = 130/401 (32%), Gaps = 58/401 (14%)

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
            +P    A  L  A   V           +    +    L  H     ++ N        P
Sbjct  33   TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAP  92

Query  229  FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR  286
              +L  ++        +    +L   +G   Y++Q+  L     +      R+     + 
Sbjct  93   TRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN  152

Query  287  YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE  337
            +        +++ +  R  D L  ++D          ++  A +RL  LF      R  E
Sbjct  153  HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPAAQRLNMLFSATLSYRVRE  207

Query  338  LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ  378
            LA    +  E     P+ +   +I +  F  SN                 R IIF  T+ 
Sbjct  208  LAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH  267

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT  438
                +         L     R  LL G         + Q+ +  ++ +F  G L++LVAT
Sbjct  268  RCEDIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT  313

Query  439  SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE  497
             VA  GL IP    V  Y L  +    V   GR  RA  S ++         L       
Sbjct  314  DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP  369

Query  498  ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA  538
            A+E+ +  ++   +   +    A + DL +     R+    
Sbjct  370  AIESYIGHSIPVSKYNPE----ALMNDLPKPLRLTRSRPGN  406


 Score = 43.6 bits (101),  Expect = 0.005, Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV  77
            TG GKT A       +L          V+  + +++     L  Q         D     
Sbjct  55   TGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQ------IHADAEPLA  108

Query  78   TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH  134
                  +G   G     +   +L    ++L      L    ++ H+ L    ++V+DE  
Sbjct  109  QATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD  168

Query  135  H  135
             
Sbjct  169  R  169


>sp|B4TB13|RHLB_SALHS ATP-dependent RNA helicase RhlB OS=Salmonella 
heidelberg (strain SL476) OX=454169 GN=rhlB PE=3 SV=1
Length=421

 Score = 155 bits (392),  Expect = 4e-40, Method: Composition-based stats.
 Identities = 75/401 (19%), Positives = 130/401 (32%), Gaps = 58/401 (14%)

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
            +P    A  L  A   V           +    +    L  H     ++ N        P
Sbjct  33   TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAP  92

Query  229  FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR  286
              +L  ++        +    +L   +G   Y++Q+  L     +      R+     + 
Sbjct  93   TRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN  152

Query  287  YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE  337
            +        +++ +  R  D L  ++D          ++  A +RL  LF      R  E
Sbjct  153  HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPAAQRLNMLFSATLSYRVRE  207

Query  338  LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ  378
            LA    +  E     P+ +   +I +  F  SN                 R IIF  T+ 
Sbjct  208  LAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH  267

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT  438
                +         L     R  LL G         + Q+ +  ++ +F  G L++LVAT
Sbjct  268  RCEDIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT  313

Query  439  SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE  497
             VA  GL IP    V  Y L  +    V   GR  RA  S ++         L       
Sbjct  314  DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP  369

Query  498  ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA  538
            A+E+ +  ++   +   +    A + DL +     R+    
Sbjct  370  AIESYIGHSIPVSKYNPE----ALMNDLPKPLRLTRSRPGN  406


 Score = 43.6 bits (101),  Expect = 0.005, Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV  77
            TG GKT A       +L          V+  + +++     L  Q         D     
Sbjct  55   TGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQ------IHADAEPLA  108

Query  78   TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH  134
                  +G   G     +   +L    ++L      L    ++ H+ L    ++V+DE  
Sbjct  109  QATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD  168

Query  135  H  135
             
Sbjct  169  R  169


>sp|B5RFS3|RHLB_SALG2 ATP-dependent RNA helicase RhlB OS=Salmonella 
gallinarum (strain 287/91 / NCTC 13346) OX=550538 GN=rhlB 
PE=3 SV=1
Length=421

 Score = 155 bits (392),  Expect = 4e-40, Method: Composition-based stats.
 Identities = 75/401 (19%), Positives = 130/401 (32%), Gaps = 58/401 (14%)

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
            +P    A  L  A   V           +    +    L  H     ++ N        P
Sbjct  33   TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAP  92

Query  229  FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR  286
              +L  ++        +    +L   +G   Y++Q+  L     +      R+     + 
Sbjct  93   TRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN  152

Query  287  YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE  337
            +        +++ +  R  D L  ++D          ++  A +RL  LF      R  E
Sbjct  153  HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPAAQRLNMLFSATLSYRVRE  207

Query  338  LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ  378
            LA    +  E     P+ +   +I +  F  SN                 R IIF  T+ 
Sbjct  208  LAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH  267

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT  438
                +         L     R  LL G         + Q+ +  ++ +F  G L++LVAT
Sbjct  268  RCEDIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT  313

Query  439  SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE  497
             VA  GL IP    V  Y L  +    V   GR  RA  S ++         L       
Sbjct  314  DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP  369

Query  498  ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA  538
            A+E+ +  ++   +   +    A + DL +     R+    
Sbjct  370  AIESYIGHSIPVSKYNPE----ALMNDLPKPLRLTRSRPGN  406


 Score = 43.6 bits (101),  Expect = 0.005, Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV  77
            TG GKT A       +L          V+  + +++     L  Q         D     
Sbjct  55   TGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQ------IHADAEPLA  108

Query  78   TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH  134
                  +G   G     +   +L    ++L      L    ++ H+ L    ++V+DE  
Sbjct  109  QATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD  168

Query  135  H  135
             
Sbjct  169  R  169


>sp|B5QVH2|RHLB_SALEP ATP-dependent RNA helicase RhlB OS=Salmonella 
enteritidis PT4 (strain P125109) OX=550537 GN=rhlB PE=3 
SV=1
Length=421

 Score = 155 bits (392),  Expect = 4e-40, Method: Composition-based stats.
 Identities = 75/401 (19%), Positives = 130/401 (32%), Gaps = 58/401 (14%)

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
            +P    A  L  A   V           +    +    L  H     ++ N        P
Sbjct  33   TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAP  92

Query  229  FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR  286
              +L  ++        +    +L   +G   Y++Q+  L     +      R+     + 
Sbjct  93   TRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN  152

Query  287  YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE  337
            +        +++ +  R  D L  ++D          ++  A +RL  LF      R  E
Sbjct  153  HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPAAQRLNMLFSATLSYRVRE  207

Query  338  LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ  378
            LA    +  E     P+ +   +I +  F  SN                 R IIF  T+ 
Sbjct  208  LAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH  267

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT  438
                +         L     R  LL G         + Q+ +  ++ +F  G L++LVAT
Sbjct  268  RCEDIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT  313

Query  439  SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE  497
             VA  GL IP    V  Y L  +    V   GR  RA  S ++         L       
Sbjct  314  DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP  369

Query  498  ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA  538
            A+E+ +  ++   +   +    A + DL +     R+    
Sbjct  370  AIESYIGHSIPVSKYNPE----ALMNDLPKPLRLTRSRPGN  406


 Score = 43.6 bits (101),  Expect = 0.005, Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV  77
            TG GKT A       +L          V+  + +++     L  Q         D     
Sbjct  55   TGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQ------IHADAEPLA  108

Query  78   TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH  134
                  +G   G     +   +L    ++L      L    ++ H+ L    ++V+DE  
Sbjct  109  QATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD  168

Query  135  H  135
             
Sbjct  169  R  169


>sp|Q57HT6|RHLB_SALCH ATP-dependent RNA helicase RhlB OS=Salmonella 
choleraesuis (strain SC-B67) OX=321314 GN=rhlB PE=3 SV=1
Length=421

 Score = 155 bits (392),  Expect = 4e-40, Method: Composition-based stats.
 Identities = 75/401 (19%), Positives = 130/401 (32%), Gaps = 58/401 (14%)

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
            +P    A  L  A   V           +    +    L  H     ++ N        P
Sbjct  33   TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAP  92

Query  229  FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR  286
              +L  ++        +    +L   +G   Y++Q+  L     +      R+     + 
Sbjct  93   TRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN  152

Query  287  YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE  337
            +        +++ +  R  D L  ++D          ++  A +RL  LF      R  E
Sbjct  153  HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPAAQRLNMLFSATLSYRVRE  207

Query  338  LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ  378
            LA    +  E     P+ +   +I +  F  SN                 R IIF  T+ 
Sbjct  208  LAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH  267

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT  438
                +         L     R  LL G         + Q+ +  ++ +F  G L++LVAT
Sbjct  268  RCEDIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT  313

Query  439  SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE  497
             VA  GL IP    V  Y L  +    V   GR  RA  S ++         L       
Sbjct  314  DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP  369

Query  498  ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA  538
            A+E+ +  ++   +   +    A + DL +     R+    
Sbjct  370  AIESYIGHSIPVSKYNPE----ALMNDLPKPLRLTRSRPGN  406


 Score = 43.6 bits (101),  Expect = 0.005, Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV  77
            TG GKT A       +L          V+  + +++     L  Q         D     
Sbjct  55   TGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQ------IHADAEPLA  108

Query  78   TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH  134
                  +G   G     +   +L    ++L      L    ++ H+ L    ++V+DE  
Sbjct  109  QATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD  168

Query  135  H  135
             
Sbjct  169  R  169


>sp|B5EZ40|RHLB_SALA4 ATP-dependent RNA helicase RhlB OS=Salmonella 
agona (strain SL483) OX=454166 GN=rhlB PE=3 SV=1
Length=421

 Score = 155 bits (392),  Expect = 4e-40, Method: Composition-based stats.
 Identities = 75/401 (19%), Positives = 130/401 (32%), Gaps = 58/401 (14%)

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
            +P    A  L  A   V           +    +    L  H     ++ N        P
Sbjct  33   TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAP  92

Query  229  FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR  286
              +L  ++        +    +L   +G   Y++Q+  L     +      R+     + 
Sbjct  93   TRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN  152

Query  287  YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE  337
            +        +++ +  R  D L  ++D          ++  A +RL  LF      R  E
Sbjct  153  HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPAAQRLNMLFSATLSYRVRE  207

Query  338  LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ  378
            LA    +  E     P+ +   +I +  F  SN                 R IIF  T+ 
Sbjct  208  LAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH  267

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT  438
                +         L     R  LL G         + Q+ +  ++ +F  G L++LVAT
Sbjct  268  RCEDIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT  313

Query  439  SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE  497
             VA  GL IP    V  Y L  +    V   GR  RA  S ++         L       
Sbjct  314  DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP  369

Query  498  ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA  538
            A+E+ +  ++   +   +    A + DL +     R+    
Sbjct  370  AIESYIGHSIPVSKYNPE----ALMNDLPKPLRLTRSRPGN  406


 Score = 43.6 bits (101),  Expect = 0.005, Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV  77
            TG GKT A       +L          V+  + +++     L  Q         D     
Sbjct  55   TGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQ------IHADAEPLA  108

Query  78   TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH  134
                  +G   G     +   +L    ++L      L    ++ H+ L    ++V+DE  
Sbjct  109  QATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD  168

Query  135  H  135
             
Sbjct  169  R  169


>sp|A9L5D5|RHLB_SHEB9 ATP-dependent RNA helicase RhlB OS=Shewanella 
baltica (strain OS195) OX=399599 GN=rhlB PE=3 SV=1
Length=438

 Score = 156 bits (393),  Expect = 4e-40, Method: Composition-based stats.
 Identities = 64/324 (20%), Positives = 117/324 (36%), Gaps = 60/324 (19%)

Query  253  FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR-----RYNDALLIHDTVRAVDALAALQ  307
            +G + Y+ Q   L +   +      R+     +         A+++ +  R  D L  ++
Sbjct  119  YGGESYDVQRKVLDQGVDILIGTTGRIIDYVRQGIIGLNSIQAVVLDEADRMFD-LGFIK  177

Query  308  DFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPE----------------  347
            D          ++  A +RL  LF      +  ELA+   + P                 
Sbjct  178  DIRFLFR----RMPEANQRLNMLFSATLSMKVQELAYDHMNEPVKVEIAPEEKTSKNIKE  233

Query  348  ---NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI  404
                P  E   ++L          + I+F+ T+ S  +L  WL      +    R  LL 
Sbjct  234  EIFYPSQEEKMRLLLTLIEEDWPEKAIVFSNTKHSCETLWSWL------EGDGHRVGLLT  287

Query  405  GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
            G         + Q+ +  ++++F  G L++LVAT VA  GL I   + V  Y L  +   
Sbjct  288  G--------DVPQKKRIRILEQFTSGQLDILVATDVAARGLHISDVSHVYNYDLPDDCED  339

Query  465  MVQARGR-ARADQSV--YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK  521
             V   GR  RA       +F   E +  L       A+E+ +  ++     +   + +A 
Sbjct  340  YVHRIGRTGRAGNKGMSISFACEEYALNLP------AIESYINHSIP----VSNYDSEAL  389

Query  522  IRDLQQAALTKRAAQAAQRENQRQ  545
            + D+   A   R   +  R  + +
Sbjct  390  LADIPTPAKIHRKHPSGTRNLRDR  413


 Score = 43.2 bits (100),  Expect = 0.006, Method: Composition-based stats.
 Identities = 21/119 (18%), Positives = 37/119 (31%), Gaps = 13/119 (11%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGE-EFRRMLDGRWT  76
            TG GKT A       HL          ++  + +++     L  Q  +            
Sbjct  55   TGTGKTMAFLVATFNHLLSTPVPEGRLINQPRAIIMAPTRELAIQIAKDAILLAKHTHLK  114

Query  77   VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH  135
            V  + G          L +  D+LI T   +   +     +  + L     +V+DE   
Sbjct  115  VGIVYGGESYDVQRKVLDQGVDILIGTTGRIIDYV----RQGIIGLNSIQAVVLDEADR  169


>sp|A6WTD3|RHLB_SHEB8 ATP-dependent RNA helicase RhlB OS=Shewanella 
baltica (strain OS185) OX=402882 GN=rhlB PE=3 SV=1
Length=438

 Score = 156 bits (393),  Expect = 4e-40, Method: Composition-based stats.
 Identities = 64/324 (20%), Positives = 117/324 (36%), Gaps = 60/324 (19%)

Query  253  FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR-----RYNDALLIHDTVRAVDALAALQ  307
            +G + Y+ Q   L +   +      R+     +         A+++ +  R  D L  ++
Sbjct  119  YGGESYDVQRKVLDQGVDILIGTTGRIIDYVRQGIIGLNSIQAVVLDEADRMFD-LGFIK  177

Query  308  DFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPE----------------  347
            D          ++  A +RL  LF      +  ELA+   + P                 
Sbjct  178  DIRFLFR----RMPEANQRLNMLFSATLSMKVQELAYDHMNEPVKVEIAPEEKTSKNIKE  233

Query  348  ---NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI  404
                P  E   ++L          + I+F+ T+ S  +L  WL      +    R  LL 
Sbjct  234  EIFYPSQEEKMRLLLTLIEEDWPEKAIVFSNTKHSCETLWSWL------EGDGHRVGLLT  287

Query  405  GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
            G         + Q+ +  ++++F  G L++LVAT VA  GL I   + V  Y L  +   
Sbjct  288  G--------DVPQKKRIRILEQFTSGQLDILVATDVAARGLHISDVSHVYNYDLPDDCED  339

Query  465  MVQARGR-ARADQSV--YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK  521
             V   GR  RA       +F   E +  L       A+E+ +  ++     +   + +A 
Sbjct  340  YVHRIGRTGRAGNKGMSISFACEEYALNLP------AIESYINHSIP----VSNYDSEAL  389

Query  522  IRDLQQAALTKRAAQAAQRENQRQ  545
            + D+   A   R   +  R  + +
Sbjct  390  LADIPTPAKIHRKHPSGTRNLRDR  413


 Score = 43.2 bits (100),  Expect = 0.006, Method: Composition-based stats.
 Identities = 21/119 (18%), Positives = 37/119 (31%), Gaps = 13/119 (11%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGE-EFRRMLDGRWT  76
            TG GKT A       HL          ++  + +++     L  Q  +            
Sbjct  55   TGTGKTMAFLVATFNHLLSTPVPEGRLINQPRAIIMAPTRELAIQIAKDAILLAKHTHLK  114

Query  77   VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH  135
            V  + G          L +  D+LI T   +   +     +  + L     +V+DE   
Sbjct  115  VGIVYGGESYDVQRKVLDQGVDILIGTTGRIIDYV----RQGIIGLNSIQAVVLDEADR  169


>sp|A3D9I5|RHLB_SHEB5 ATP-dependent RNA helicase RhlB OS=Shewanella 
baltica (strain OS155 / ATCC BAA-1091) OX=325240 GN=rhlB 
PE=3 SV=1
Length=438

 Score = 156 bits (393),  Expect = 5e-40, Method: Composition-based stats.
 Identities = 64/324 (20%), Positives = 117/324 (36%), Gaps = 60/324 (19%)

Query  253  FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR-----RYNDALLIHDTVRAVDALAALQ  307
            +G + Y+ Q   L +   +      R+     +         A+++ +  R  D L  ++
Sbjct  119  YGGESYDVQRKVLDQGVDILIGTTGRIIDYVRQGIIGLNSIQAVVLDEADRMFD-LGFIK  177

Query  308  DFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPE----------------  347
            D          ++  A +RL  LF      +  ELA+   + P                 
Sbjct  178  DIRFLFR----RMPEANQRLNMLFSATLSMKVQELAYDHMNEPVKVEIAPEEKTSKNIKE  233

Query  348  ---NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI  404
                P  E   ++L          + I+F+ T+ S  +L  WL      +    R  LL 
Sbjct  234  EIFYPSQEEKMRLLLTLIEEDWPEKAIVFSNTKHSCETLWSWL------EGDGHRVGLLT  287

Query  405  GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
            G         + Q+ +  ++++F  G L++LVAT VA  GL I   + V  Y L  +   
Sbjct  288  G--------DVPQKKRIRILEQFTSGQLDILVATDVAARGLHISDVSHVYNYDLPDDCED  339

Query  465  MVQARGR-ARADQSV--YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK  521
             V   GR  RA       +F   E +  L       A+E+ +  ++     +   + +A 
Sbjct  340  YVHRIGRTGRAGNKGMSISFACEEYALNLP------AIESYINHSIP----VSNYDSEAL  389

Query  522  IRDLQQAALTKRAAQAAQRENQRQ  545
            + D+   A   R   +  R  + +
Sbjct  390  LADIPTPAKIHRKHPSGTRNLRDR  413


 Score = 43.2 bits (100),  Expect = 0.006, Method: Composition-based stats.
 Identities = 21/119 (18%), Positives = 37/119 (31%), Gaps = 13/119 (11%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGE-EFRRMLDGRWT  76
            TG GKT A       HL          ++  + +++     L  Q  +            
Sbjct  55   TGTGKTMAFLVATFNHLLSTPVPEGRLINQPRAIIMAPTRELAIQIAKDAILLAKHTHLK  114

Query  77   VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH  135
            V  + G          L +  D+LI T   +   +     +  + L     +V+DE   
Sbjct  115  VGIVYGGESYDVQRKVLDQGVDILIGTTGRIIDYV----RQGIIGLNSIQAVVLDEADR  169


>sp|B8E670|RHLB_SHEB2 ATP-dependent RNA helicase RhlB OS=Shewanella 
baltica (strain OS223) OX=407976 GN=rhlB PE=3 SV=1
Length=438

 Score = 156 bits (393),  Expect = 5e-40, Method: Composition-based stats.
 Identities = 64/324 (20%), Positives = 117/324 (36%), Gaps = 60/324 (19%)

Query  253  FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR-----RYNDALLIHDTVRAVDALAALQ  307
            +G + Y+ Q   L +   +      R+     +         A+++ +  R  D L  ++
Sbjct  119  YGGESYDVQRKVLDQGVDILIGTTGRIIDYVRQGIIGLNSIQAVVLDEADRMFD-LGFIK  177

Query  308  DFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPE----------------  347
            D          ++  A +RL  LF      +  ELA+   + P                 
Sbjct  178  DIRFLFR----RMPEANQRLNMLFSATLSMKVQELAYDHMNEPVKVEIAPEEKTSKNIKE  233

Query  348  ---NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI  404
                P  E   ++L          + I+F+ T+ S  +L  WL      +    R  LL 
Sbjct  234  EIFYPSQEEKMRLLLTLIEEDWPEKAIVFSNTKHSCETLWSWL------EGDGHRVGLLT  287

Query  405  GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
            G         + Q+ +  ++++F  G L++LVAT VA  GL I   + V  Y L  +   
Sbjct  288  G--------DVPQKKRIRILEQFTSGQLDILVATDVAARGLHISDVSHVYNYDLPDDCED  339

Query  465  MVQARGR-ARADQSV--YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK  521
             V   GR  RA       +F   E +  L       A+E+ +  ++     +   + +A 
Sbjct  340  YVHRIGRTGRAGNKGMSISFACEEYALNLP------AIESYINHSIP----VSNYDSEAL  389

Query  522  IRDLQQAALTKRAAQAAQRENQRQ  545
            + D+   A   R   +  R  + +
Sbjct  390  LADIPTPAKIHRKHPSGTRNLRDR  413


 Score = 43.2 bits (100),  Expect = 0.006, Method: Composition-based stats.
 Identities = 21/119 (18%), Positives = 37/119 (31%), Gaps = 13/119 (11%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGE-EFRRMLDGRWT  76
            TG GKT A       HL          ++  + +++     L  Q  +            
Sbjct  55   TGTGKTMAFLVATFNHLLSTPVPEGRLINQPRAIIMAPTRELAIQIAKDAILLAKHTHLK  114

Query  77   VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH  135
            V  + G          L +  D+LI T   +   +     +  + L     +V+DE   
Sbjct  115  VGIVYGGESYDVQRKVLDQGVDILIGTTGRIIDYV----RQGIIGLNSIQAVVLDEADR  169


>sp|B5FN74|RHLB_SALDC ATP-dependent RNA helicase RhlB OS=Salmonella 
dublin (strain CT_02021853) OX=439851 GN=rhlB PE=3 SV=1
Length=421

 Score = 155 bits (391),  Expect = 6e-40, Method: Composition-based stats.
 Identities = 75/401 (19%), Positives = 130/401 (32%), Gaps = 58/401 (14%)

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
            +P    A  L  A   V           +    +    L  H     ++ N        P
Sbjct  33   TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAP  92

Query  229  FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR  286
              +L  ++        +    +L   +G   Y++Q+  L     +      R+     + 
Sbjct  93   TRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN  152

Query  287  YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE  337
            +        +++ +  R  D L  ++D          ++  A +RL  LF      R  E
Sbjct  153  HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPAAQRLNMLFSATLSYRVRE  207

Query  338  LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ  378
            LA    +  E     P+ +   +I +  F  SN                 R IIF  T+ 
Sbjct  208  LAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH  267

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT  438
                +         L     R  LL G         + Q+ +  ++ +F  G L++LVAT
Sbjct  268  RCEDIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT  313

Query  439  SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE  497
             VA  GL IP    V  Y L  +    V   GR  RA  S ++         L       
Sbjct  314  DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP  369

Query  498  ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA  538
            A+E+ +  ++   +   +    A + DL +     R+    
Sbjct  370  AIESYIGHSIPVSKYNPE----ALMNDLPKPLRLTRSRPGN  406


 Score = 43.6 bits (101),  Expect = 0.005, Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV  77
            TG GKT A       +L          V+  + +++     L  Q         D     
Sbjct  55   TGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQ------IHADAEPLA  108

Query  78   TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH  134
                  +G   G     +   +L    ++L      L    ++ H+ L    ++V+DE  
Sbjct  109  QATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD  168

Query  135  H  135
             
Sbjct  169  R  169


>sp|A9MJ29|RHLB_SALAR ATP-dependent RNA helicase RhlB OS=Salmonella 
arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) OX=41514 
GN=rhlB PE=3 SV=1
Length=421

 Score = 154 bits (390),  Expect = 7e-40, Method: Composition-based stats.
 Identities = 75/401 (19%), Positives = 131/401 (33%), Gaps = 58/401 (14%)

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
            +P    A  L  A   V           +    +    L  H     ++ N        P
Sbjct  33   TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAP  92

Query  229  FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR  286
              +L  ++        ++   +L   +G   Y++Q+  L     +      R+     + 
Sbjct  93   TRELAVQIHADAEPLAQVTGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN  152

Query  287  YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE  337
            +        +++ +  R  D L  ++D          ++  A +RL  LF      R  E
Sbjct  153  HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPAAQRLNMLFSATLSYRVRE  207

Query  338  LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ  378
            LA    +  E     P+ +   +I +  F  SN                 R IIF  T+ 
Sbjct  208  LAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH  267

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT  438
                +         L     R  LL G         + Q+ +  ++ +F  G L++LVAT
Sbjct  268  RCEDIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT  313

Query  439  SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE  497
             VA  GL IP    V  Y L  +    V   GR  RA  S ++         L       
Sbjct  314  DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP  369

Query  498  ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA  538
            A+E+ +  ++   +   +    A + DL +     R+    
Sbjct  370  AIESYIGHSIPVSKYNPE----ALMTDLPKPLRLTRSRPGN  406


 Score = 43.2 bits (100),  Expect = 0.006, Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV  77
            TG GKT A       +L          V+  + +++     L  Q         D     
Sbjct  55   TGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQ------IHADAEPLA  108

Query  78   TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH  134
                  +G   G     +   +L    ++L      L    ++ H+ L    ++V+DE  
Sbjct  109  QVTGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD  168

Query  135  H  135
             
Sbjct  169  R  169


>sp|A4WG30|RHLB_ENT38 ATP-dependent RNA helicase RhlB OS=Enterobacter 
sp. (strain 638) OX=399742 GN=rhlB PE=3 SV=1
Length=421

 Score = 154 bits (390),  Expect = 9e-40, Method: Composition-based stats.
 Identities = 70/363 (19%), Positives = 119/363 (33%), Gaps = 58/363 (16%)

Query  207  LQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVK  264
            L  +     ++ N        P  +L  ++        +    +L   +G   Y++Q+  
Sbjct  71   LLSNPAMADRKVNQPRALIMAPTRELAVQIHADAEPLAQTTGLKLGLAYGGDGYDKQLKV  130

Query  265  LSEAAALAGLQEQRVYALHLRRYN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQ  319
            L     +      R+     + +        +++ +  R  D L  ++D          +
Sbjct  131  LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----R  185

Query  320  ILCAERRLLALFDD----RKNELAHLATHGPEN----PKLEMLEKILQRQFSSSNS----  367
            +    +RL  LF      R  ELA    +  E     P+ +   +I +  F  SN     
Sbjct  186  MPPTPQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMR  245

Query  368  -----------PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT  416
                        R IIF  T+     +         L     R  LL G         + 
Sbjct  246  LLQTLIEEEWPDRAIIFANTKHRCEDIW------GHLAADGHRVGLLTG--------DVA  291

Query  417  QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARAD  475
            Q+ +  +++ F  G L++LVAT VA  GL IP    V  Y L  +    V   GR  RA 
Sbjct  292  QKKRLRILEDFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAG  351

Query  476  QSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAA  535
             S ++         L       A+ET +  +V   +        A + +L       RA 
Sbjct  352  ASGHSISLACEEYALN----LTAIETYIGHSVPQSKYNP----DALLSELPPPKRLTRAR  403

Query  536  QAA  538
               
Sbjct  404  SGN  406


 Score = 45.9 bits (107),  Expect = 0.001, Method: Composition-based stats.
 Identities = 31/157 (20%), Positives = 57/157 (36%), Gaps = 24/157 (15%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV  77
            TG GKT A    A  +L          V+  + +++     L  Q         D     
Sbjct  55   TGTGKTMAFLTSAFHYLLSNPAMADRKVNQPRALIMAPTRELAVQ------IHADAEPLA  108

Query  78   TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH  134
             T    +G   G     +   +L    ++L      L    ++ H+ L    ++V+DE  
Sbjct  109  QTTGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEA-  167

Query  135  HTHKDTVYNVIMSQYLELKLQRAQPLPQVLGL--TAS  169
                D +Y++   + +    +R  P PQ L +  +A+
Sbjct  168  ----DRMYDLGFIKDIRWLFRRMPPTPQRLNMLFSAT  200


>sp|B5BIS9|RHLB_SALPK ATP-dependent RNA helicase RhlB OS=Salmonella 
paratyphi A (strain AKU_12601) OX=554290 GN=rhlB PE=3 
SV=1
Length=421

 Score = 154 bits (389),  Expect = 1e-39, Method: Composition-based stats.
 Identities = 75/401 (19%), Positives = 130/401 (32%), Gaps = 58/401 (14%)

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
            +P    A  L  A   V           +    +    L  H     ++ N        P
Sbjct  33   TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAP  92

Query  229  FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR  286
              +L  ++        +    +L   +G   Y++Q+  L     +      R+     + 
Sbjct  93   TRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN  152

Query  287  YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE  337
            +        +++ +  R  D L  ++D          ++  A +RL  LF      R  E
Sbjct  153  HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RVPPAAQRLNMLFSATLSYRVRE  207

Query  338  LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ  378
            LA    +  E     P+ +   +I +  F  SN                 R IIF  T+ 
Sbjct  208  LAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH  267

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT  438
                +         L     R  LL G         + Q+ +  ++ +F  G L++LVAT
Sbjct  268  RCEDIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT  313

Query  439  SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE  497
             VA  GL IP    V  Y L  +    V   GR  RA  S ++         L       
Sbjct  314  DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP  369

Query  498  ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA  538
            A+E+ +  ++   +   +    A + DL +     R+    
Sbjct  370  AIESYIGHSIPVSKYNPE----ALMNDLPKPLRLTRSRPGN  406


 Score = 43.6 bits (101),  Expect = 0.005, Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV  77
            TG GKT A       +L          V+  + +++     L  Q         D     
Sbjct  55   TGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQ------IHADAEPLA  108

Query  78   TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH  134
                  +G   G     +   +L    ++L      L    ++ H+ L    ++V+DE  
Sbjct  109  QATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD  168

Query  135  H  135
             
Sbjct  169  R  169


>sp|A3Q9R3|RHLB_SHELP ATP-dependent RNA helicase RhlB OS=Shewanella 
loihica (strain ATCC BAA-1088 / PV-4) OX=323850 GN=rhlB 
PE=3 SV=1
Length=435

 Score = 154 bits (389),  Expect = 1e-39, Method: Composition-based stats.
 Identities = 65/328 (20%), Positives = 116/328 (35%), Gaps = 62/328 (19%)

Query  253  FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN-----DALLIHDTVRAVDALAALQ  307
            +G + YE Q   L +   +      R+     +         A+++ +  R  D L  ++
Sbjct  119  YGGESYEVQRKVLDKGVDILIGTTGRIIDYVRQGVINLSAIQAVVLDEADRMFD-LGFIK  177

Query  308  DFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPE----------------  347
            D          ++  A  RL  LF      +  ELA+   + PE                
Sbjct  178  DIRFLFR----RMPDANERLNMLFSATLSMKVQELAYDHMNDPEKVEIAPSEKTSKNITE  233

Query  348  ---NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI  404
                P +E   ++L          + I+F+ T+ S  +L         L+    R  LL 
Sbjct  234  EIFYPSMEDKMRLLLTLIEEDWPEKAIVFSNTKHSCENLW------AHLEGDGHRVGLLT  287

Query  405  GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
            G         + Q+ +  ++++F  G L++LVAT VA  GL I   + V  Y L  +   
Sbjct  288  G--------DVPQKKRIRILEQFTKGELDILVATDVAARGLHISDVSHVYNYDLPDDCED  339

Query  465  MVQARGR-ARADQSV--YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK  521
             V   GR  RA Q     +F   E +  L       A+E  ++ ++     +   + +A 
Sbjct  340  YVHRIGRTGRAGQKGVSVSFACEEYALNLP------AIEHYIQHSIP----VTNYDSEAL  389

Query  522  IRDLQQAALTKRA--AQAAQRENQRQQF  547
            + D+       R    +   R    +  
Sbjct  390  LDDIPPPVRIHRKHSPRPTGRSGGGKPQ  417


 Score = 46.3 bits (108),  Expect = 7e-04, Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 40/121 (33%), Gaps = 17/121 (14%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHG---EEFRRMLDGR  74
            TG GKT A       HL          ++  + +V+     L  Q     E   +    +
Sbjct  55   TGTGKTLAFLVATFNHLLTTPIPDGRQLNQPRAIVMAPTRELAIQIAKDGELLAKHTGLK  114

Query  75   WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECH  134
              V  + G          L +  D+LI T   +   +     +  + L+    +V+DE  
Sbjct  115  --VGIVYGGESYEVQRKVLDKGVDILIGTTGRIIDYV----RQGVINLSAIQAVVLDEAD  168

Query  135  H  135
             
Sbjct  169  R  169


>sp|B1KQF6|RHLB_SHEWM ATP-dependent RNA helicase RhlB OS=Shewanella 
woodyi (strain ATCC 51908 / MS32) OX=392500 GN=rhlB PE=3 
SV=1
Length=441

 Score = 154 bits (389),  Expect = 2e-39, Method: Composition-based stats.
 Identities = 62/329 (19%), Positives = 117/329 (36%), Gaps = 63/329 (19%)

Query  253  FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR-----RYNDALLIHDTVRAVDALAALQ  307
            +G + Y+ Q   L +   +      R+     +         A+++ +  R  D L  ++
Sbjct  119  YGGESYDVQRKVLDKGVDILIGTTGRIIDYVRQGIINLSAIQAVVLDEADRMFD-LGFIK  177

Query  308  DFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPE----------------  347
            D          ++  A+ RL  LF      +  ELA+   + PE                
Sbjct  178  DIRFLFR----RMPDAKSRLNMLFSATLSMKVQELAYDHMNEPEKVVIAPNEKTSKNIKE  233

Query  348  ---NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI  404
                P ++   ++L          + I+F+ T+ S  ++  WL      +    R  LL 
Sbjct  234  EIFYPSMDEKMRLLLSLIEEDWPEKAIVFSNTKHSCENVWSWL------EGDGHRVGLLT  287

Query  405  GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
            G         + Q+ +  ++++F +G L++LVAT VA  GL I   + V  Y L  +   
Sbjct  288  G--------DVPQKKRIRILEQFTEGKLDILVATDVAARGLHISDVSHVYNYDLPDDCED  339

Query  465  MVQARGR-ARADQSV--YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK  521
             V   GR  RA +     +F   E +  L       A+E  +  ++     +   + +  
Sbjct  340  YVHRIGRTGRAGKKGVSVSFACEEYALNLP------AIEEYITHSIP----VTNYDSEGL  389

Query  522  IRDLQQAALTKRA---AQAAQRENQRQQF  547
            + D+       R         R N  +  
Sbjct  390  LDDIPAPIRVHRKHNNRPQQGRNNSGRPQ  418


 Score = 43.2 bits (100),  Expect = 0.006, Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 60/194 (31%), Gaps = 23/194 (12%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEE---FRRMLDGR  74
            TG GKT A       HL          ++  + +++     L  Q  ++     +    +
Sbjct  55   TGTGKTLAFLVATFDHLLSTPVPEGRQLNQPRAMIMAPTRELAIQIAKDATLLAKHTGLK  114

Query  75   WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECH  134
              V  + G          L +  D+LI T   +   +     +  + L+    +V+DE  
Sbjct  115  --VGIVYGGESYDVQRKVLDKGVDILIGTTGRIIDYV----RQGIINLSAIQAVVLDEAD  168

Query  135  HTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDT  194
                D  +   +             L  +   T S         + A +H+ +    +  
Sbjct  169  R-MFDLGFIKDIRFLFRRMPDAKSRLNMLFSATLS-----MKVQELAYDHMNEPEKVVIA  222

Query  195  WCIMSPQNCCPQLQ  208
                + +N   ++ 
Sbjct  223  PNEKTSKNIKEEIF  236


>sp|A7MQI2|RHLB_CROS8 ATP-dependent RNA helicase RhlB OS=Cronobacter 
sakazakii (strain ATCC BAA-894) OX=290339 GN=rhlB PE=3 
SV=1
Length=421

 Score = 154 bits (388),  Expect = 2e-39, Method: Composition-based stats.
 Identities = 77/401 (19%), Positives = 126/401 (31%), Gaps = 58/401 (14%)

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
            +P    A  L  A   V           +    +    L  H     +Q N        P
Sbjct  33   TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAAENRQVNQPRALIMAP  92

Query  229  FGDLLKKLMDQIHDHLEMP--ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR  286
              +L  ++        E    +L   +G   Y++Q+  L     +      R+     + 
Sbjct  93   TRELAVQIHSDAEPLAEATGIKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYTKQN  152

Query  287  YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE  337
            +        +++ +  R  D L  ++D          ++  A  RL  LF      R  E
Sbjct  153  HVNLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPAATERLNMLFSATLSYRVRE  207

Query  338  LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ  378
            LA    +  E     P+ +   +I +  F  SN                 R IIF  T+ 
Sbjct  208  LAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH  267

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT  438
                +         L     R  LL G         + Q+ +  ++ +F  G L++LVAT
Sbjct  268  RCEDIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT  313

Query  439  SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE  497
             VA  GL IP    V  Y L  +    V   GR  RA  S ++         L       
Sbjct  314  DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP  369

Query  498  ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA  538
            A+ET +  ++   +        A + +L       R     
Sbjct  370  AIETYIGHSIPVSKYNP----DALLSELPPPKRLSRPRTGN  406


 Score = 43.6 bits (101),  Expect = 0.005, Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 41/119 (34%), Gaps = 13/119 (11%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV  77
            TG GKT A       +L          V+  + +++     L  Q   +   + +     
Sbjct  55   TGTGKTMAFLTSTFHYLLSHPAAENRQVNQPRALIMAPTRELAVQIHSDAEPLAEATGIK  114

Query  78   TTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH  135
              L+ G  G       L    D+LI T   L        ++ HV L    ++V+DE   
Sbjct  115  LGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDY----TKQNHVNLGAIQVVVLDEADR  169


>sp|Q9CJS1|RHLB_PASMU ATP-dependent RNA helicase RhlB OS=Pasteurella 
multocida (strain Pm70) OX=272843 GN=rhlB PE=3 SV=1
Length=423

 Score = 154 bits (388),  Expect = 2e-39, Method: Composition-based stats.
 Identities = 63/296 (21%), Positives = 108/296 (36%), Gaps = 56/296 (19%)

Query  247  PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN-----DALLIHDTVRAVD  301
             +    +G   YE+Q+  + +   +      RV     +          +++ +  R  D
Sbjct  111  LKTGLAYGGDGYEKQLKAIEQGVDILIGTTGRVIDYVKQGIVRLDKIQVVVLDEADRMFD  170

Query  302  ALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPENPKLEML---  354
             L  ++D  +       +    + RL  LF      +  ELA    + PE  ++E L   
Sbjct  171  -LGFIKDIRY----LLRKCPAPQHRLTMLFSATLSYKVRELAFEDMNDPEYVEIEPLQKT  225

Query  355  -EKILQRQFSSSNSP---------------RGIIFTRTRQSAHSLLLWLQQQQGLQTVDI  398
              +I +  F  SN                 R IIF  T+     +  +L           
Sbjct  226  GHRIKEELFYPSNQDKMALLLTLLEEEWPERCIIFANTKHRCEDIWGYL------AADGH  279

Query  399  RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL  458
            R  LL G         + Q+ +  ++++F +G L++LVAT VA  GL I   + V  Y L
Sbjct  280  RVGLLTG--------DVAQKKRLSLLKQFTEGHLDILVATDVAARGLHISDVSHVFNYDL  331

Query  459  LTNEISMVQARGR-ARADQSV--YAFVATEGSRELKRELINEALETLMEQAVAAVQ  511
              +    V   GR  RA +S    +F   E +  L       A+E  +  ++   Q
Sbjct  332  PDDREDYVHRIGRTGRAGESGVSISFACEEYAMNLP------AIEEYISHSIPVSQ  381


 Score = 45.9 bits (107),  Expect = 8e-04, Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 42/117 (36%), Gaps = 11/117 (9%)

Query  26   TGAGKTRAAAYVAKRHLETVDGAK------VVVLVNRVHLVTQHGEEFRRMLDGRWTVTT  79
            TG GKT A       HL T  G K       ++L     L  Q   +   +       T 
Sbjct  55   TGTGKTMAFLTATFHHLLTQQGDKGGRQPRALILAPTRELAVQINNDAALLTKATGLKTG  114

Query  80   LS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH  135
            L+ G  G       + +  D+LI T   +   +    ++  V L    ++V+DE   
Sbjct  115  LAYGGDGYEKQLKAIEQGVDILIGTTGRVIDYV----KQGIVRLDKIQVVVLDEADR  167


>sp|Q329V8|RHLB_SHIDS ATP-dependent RNA helicase RhlB OS=Shigella 
dysenteriae serotype 1 (strain Sd197) OX=300267 GN=rhlB 
PE=3 SV=1
Length=421

 Score = 153 bits (387),  Expect = 2e-39, Method: Composition-based stats.
 Identities = 72/363 (20%), Positives = 120/363 (33%), Gaps = 58/363 (16%)

Query  207  LQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVK  264
            L  H     ++ N        P  +L  ++        E    +L   +G   Y++Q+  
Sbjct  71   LLSHPAIADRKVNKPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKV  130

Query  265  LSEAAALAGLQEQRVYALHLRRYN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQ  319
            L     +      R+     + +        +++ +  R  D L  ++D          +
Sbjct  131  LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----R  185

Query  320  ILCAERRLLALFDD----RKNELAHLATHGPEN----PKLEMLEKILQRQFSSSNS----  367
            +  A +RL  LF      R  ELA    +  E     P+ +   +I +  F  SN     
Sbjct  186  MPPANQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMR  245

Query  368  -----------PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT  416
                        R IIF  T+     +         L     R  LL G         + 
Sbjct  246  LLQTLIEEEWPDRAIIFANTKHRCEEIW------GHLAADGHRVGLLTG--------DVA  291

Query  417  QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARAD  475
            Q+ +  ++ +F  G L++LVAT VA  GL IP    V  Y L  +    V   GR  RA 
Sbjct  292  QKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAG  351

Query  476  QSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAA  535
             S ++         L       A+ET +  ++   +        A + DL +     R  
Sbjct  352  ASGHSISLACEEYALN----LPAIETYIGHSIPVSKYNP----DALMTDLPKPLRLTRPR  403

Query  536  QAA  538
               
Sbjct  404  TGN  406


 Score = 45.9 bits (107),  Expect = 0.001, Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV  77
            TG GKT A       +L          V+  + +++     L  Q         D     
Sbjct  55   TGTGKTMAFLTSMFHYLLSHPAIADRKVNKPRALIMAPTRELAVQ------IHADAEPLA  108

Query  78   TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH  134
                  +G   G     +   +L    ++L      L    ++ H+ L    ++V+DE  
Sbjct  109  EATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD  168

Query  135  H  135
             
Sbjct  169  R  169


>sp|Q3YVI4|RHLB_SHISS ATP-dependent RNA helicase RhlB OS=Shigella 
sonnei (strain Ss046) OX=300269 GN=rhlB PE=3 SV=1
Length=421

 Score = 153 bits (387),  Expect = 2e-39, Method: Composition-based stats.
 Identities = 77/401 (19%), Positives = 128/401 (32%), Gaps = 58/401 (14%)

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
            +P    A  L  A   V           +    +    L  H     ++ N        P
Sbjct  33   TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAP  92

Query  229  FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR  286
              +L  ++        E    +L   +G   Y++Q+  L     +      R+     + 
Sbjct  93   TRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN  152

Query  287  YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE  337
            +        +++ +  R  D L  ++D          ++  A +RL  LF      R  E
Sbjct  153  HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPANQRLNMLFSATLSYRVRE  207

Query  338  LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ  378
            LA    +  E     P+ +   +I +  F  SN                 R IIF  T+ 
Sbjct  208  LAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH  267

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT  438
                +         L     R  LL G         + Q+ +  ++ +F  G L++LVAT
Sbjct  268  RCEEIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT  313

Query  439  SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE  497
             VA  GL IP    V  Y L  +    V   GR  RA  S ++         L       
Sbjct  314  DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP  369

Query  498  ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA  538
            A+ET +  ++   +        A + DL +     R     
Sbjct  370  AIETYIGHSIPVSKYNP----DALMTDLPKPLRLTRPRTGN  406


 Score = 43.2 bits (100),  Expect = 0.007, Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV  77
            TG GKT A       +L          V+  + +++     L  Q         D     
Sbjct  55   TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQ------IHADAEPLA  108

Query  78   TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH  134
                  +G   G     +   +L    ++L      L    ++ H+ L    ++V+DE  
Sbjct  109  EATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD  168

Query  135  H  135
             
Sbjct  169  R  169


>sp|P0A8K0|RHLB_SHIFL ATP-dependent RNA helicase RhlB OS=Shigella 
flexneri OX=623 GN=rhlB PE=3 SV=2
Length=421

 Score = 153 bits (387),  Expect = 2e-39, Method: Composition-based stats.
 Identities = 77/401 (19%), Positives = 128/401 (32%), Gaps = 58/401 (14%)

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
            +P    A  L  A   V           +    +    L  H     ++ N        P
Sbjct  33   TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAP  92

Query  229  FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR  286
              +L  ++        E    +L   +G   Y++Q+  L     +      R+     + 
Sbjct  93   TRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN  152

Query  287  YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE  337
            +        +++ +  R  D L  ++D          ++  A +RL  LF      R  E
Sbjct  153  HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPANQRLNMLFSATLSYRVRE  207

Query  338  LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ  378
            LA    +  E     P+ +   +I +  F  SN                 R IIF  T+ 
Sbjct  208  LAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH  267

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT  438
                +         L     R  LL G         + Q+ +  ++ +F  G L++LVAT
Sbjct  268  RCEEIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT  313

Query  439  SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE  497
             VA  GL IP    V  Y L  +    V   GR  RA  S ++         L       
Sbjct  314  DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP  369

Query  498  ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA  538
            A+ET +  ++   +        A + DL +     R     
Sbjct  370  AIETYIGHSIPVSKYNP----DALMTDLPKPLRLTRPRTGN  406


 Score = 43.2 bits (100),  Expect = 0.007, Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV  77
            TG GKT A       +L          V+  + +++     L  Q         D     
Sbjct  55   TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQ------IHADAEPLA  108

Query  78   TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH  134
                  +G   G     +   +L    ++L      L    ++ H+ L    ++V+DE  
Sbjct  109  EATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD  168

Query  135  H  135
             
Sbjct  169  R  169


>sp|Q1R4F9|RHLB_ECOUT ATP-dependent RNA helicase RhlB OS=Escherichia 
coli (strain UTI89 / UPEC) OX=364106 GN=rhlB PE=3 SV=1
Length=421

 Score = 153 bits (387),  Expect = 2e-39, Method: Composition-based stats.
 Identities = 77/401 (19%), Positives = 128/401 (32%), Gaps = 58/401 (14%)

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
            +P    A  L  A   V           +    +    L  H     ++ N        P
Sbjct  33   TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAP  92

Query  229  FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR  286
              +L  ++        E    +L   +G   Y++Q+  L     +      R+     + 
Sbjct  93   TRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN  152

Query  287  YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE  337
            +        +++ +  R  D L  ++D          ++  A +RL  LF      R  E
Sbjct  153  HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPANQRLNMLFSATLSYRVRE  207

Query  338  LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ  378
            LA    +  E     P+ +   +I +  F  SN                 R IIF  T+ 
Sbjct  208  LAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH  267

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT  438
                +         L     R  LL G         + Q+ +  ++ +F  G L++LVAT
Sbjct  268  RCEEIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT  313

Query  439  SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE  497
             VA  GL IP    V  Y L  +    V   GR  RA  S ++         L       
Sbjct  314  DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP  369

Query  498  ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA  538
            A+ET +  ++   +        A + DL +     R     
Sbjct  370  AIETYIGHSIPVSKYNP----DALMTDLPKPLRLTRPRTGN  406


 Score = 43.2 bits (100),  Expect = 0.007, Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV  77
            TG GKT A       +L          V+  + +++     L  Q         D     
Sbjct  55   TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQ------IHADAEPLA  108

Query  78   TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH  134
                  +G   G     +   +L    ++L      L    ++ H+ L    ++V+DE  
Sbjct  109  EATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD  168

Query  135  H  135
             
Sbjct  169  R  169


>sp|B6I4B6|RHLB_ECOSE ATP-dependent RNA helicase RhlB OS=Escherichia 
coli (strain SE11) OX=409438 GN=rhlB PE=3 SV=1
Length=421

 Score = 153 bits (387),  Expect = 2e-39, Method: Composition-based stats.
 Identities = 77/401 (19%), Positives = 128/401 (32%), Gaps = 58/401 (14%)

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
            +P    A  L  A   V           +    +    L  H     ++ N        P
Sbjct  33   TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAP  92

Query  229  FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR  286
              +L  ++        E    +L   +G   Y++Q+  L     +      R+     + 
Sbjct  93   TRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN  152

Query  287  YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE  337
            +        +++ +  R  D L  ++D          ++  A +RL  LF      R  E
Sbjct  153  HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPANQRLNMLFSATLSYRVRE  207

Query  338  LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ  378
            LA    +  E     P+ +   +I +  F  SN                 R IIF  T+ 
Sbjct  208  LAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH  267

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT  438
                +         L     R  LL G         + Q+ +  ++ +F  G L++LVAT
Sbjct  268  RCEEIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT  313

Query  439  SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE  497
             VA  GL IP    V  Y L  +    V   GR  RA  S ++         L       
Sbjct  314  DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP  369

Query  498  ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA  538
            A+ET +  ++   +        A + DL +     R     
Sbjct  370  AIETYIGHSIPVSKYNP----DALMTDLPKPLRLTRPRTGN  406


 Score = 43.2 bits (100),  Expect = 0.007, Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV  77
            TG GKT A       +L          V+  + +++     L  Q         D     
Sbjct  55   TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQ------IHADAEPLA  108

Query  78   TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH  134
                  +G   G     +   +L    ++L      L    ++ H+ L    ++V+DE  
Sbjct  109  EATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD  168

Query  135  H  135
             
Sbjct  169  R  169


>sp|P0A8J8|RHLB_ECOLI ATP-dependent RNA helicase RhlB OS=Escherichia 
coli (strain K12) OX=83333 GN=rhlB PE=1 SV=2
Length=421

 Score = 153 bits (387),  Expect = 2e-39, Method: Composition-based stats.
 Identities = 77/401 (19%), Positives = 128/401 (32%), Gaps = 58/401 (14%)

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
            +P    A  L  A   V           +    +    L  H     ++ N        P
Sbjct  33   TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAP  92

Query  229  FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR  286
              +L  ++        E    +L   +G   Y++Q+  L     +      R+     + 
Sbjct  93   TRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN  152

Query  287  YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE  337
            +        +++ +  R  D L  ++D          ++  A +RL  LF      R  E
Sbjct  153  HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPANQRLNMLFSATLSYRVRE  207

Query  338  LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ  378
            LA    +  E     P+ +   +I +  F  SN                 R IIF  T+ 
Sbjct  208  LAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH  267

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT  438
                +         L     R  LL G         + Q+ +  ++ +F  G L++LVAT
Sbjct  268  RCEEIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT  313

Query  439  SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE  497
             VA  GL IP    V  Y L  +    V   GR  RA  S ++         L       
Sbjct  314  DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP  369

Query  498  ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA  538
            A+ET +  ++   +        A + DL +     R     
Sbjct  370  AIETYIGHSIPVSKYNP----DALMTDLPKPLRLTRPRTGN  406


 Score = 43.2 bits (100),  Expect = 0.007, Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV  77
            TG GKT A       +L          V+  + +++     L  Q         D     
Sbjct  55   TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQ------IHADAEPLA  108

Query  78   TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH  134
                  +G   G     +   +L    ++L      L    ++ H+ L    ++V+DE  
Sbjct  109  EATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD  168

Query  135  H  135
             
Sbjct  169  R  169


>sp|B1IWC0|RHLB_ECOLC ATP-dependent RNA helicase RhlB OS=Escherichia 
coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 
8545 / WDCM 00012 / Crooks) OX=481805 GN=rhlB PE=3 SV=1
Length=421

 Score = 153 bits (387),  Expect = 2e-39, Method: Composition-based stats.
 Identities = 77/401 (19%), Positives = 128/401 (32%), Gaps = 58/401 (14%)

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
            +P    A  L  A   V           +    +    L  H     ++ N        P
Sbjct  33   TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAP  92

Query  229  FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR  286
              +L  ++        E    +L   +G   Y++Q+  L     +      R+     + 
Sbjct  93   TRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN  152

Query  287  YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE  337
            +        +++ +  R  D L  ++D          ++  A +RL  LF      R  E
Sbjct  153  HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPANQRLNMLFSATLSYRVRE  207

Query  338  LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ  378
            LA    +  E     P+ +   +I +  F  SN                 R IIF  T+ 
Sbjct  208  LAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH  267

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT  438
                +         L     R  LL G         + Q+ +  ++ +F  G L++LVAT
Sbjct  268  RCEEIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT  313

Query  439  SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE  497
             VA  GL IP    V  Y L  +    V   GR  RA  S ++         L       
Sbjct  314  DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP  369

Query  498  ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA  538
            A+ET +  ++   +        A + DL +     R     
Sbjct  370  AIETYIGHSIPVSKYNP----DALMTDLPKPLRLTRPRTGN  406


 Score = 43.2 bits (100),  Expect = 0.007, Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV  77
            TG GKT A       +L          V+  + +++     L  Q         D     
Sbjct  55   TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQ------IHADAEPLA  108

Query  78   TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH  134
                  +G   G     +   +L    ++L      L    ++ H+ L    ++V+DE  
Sbjct  109  EATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD  168

Query  135  H  135
             
Sbjct  169  R  169


>sp|P0A8J9|RHLB_ECOL6 ATP-dependent RNA helicase RhlB OS=Escherichia 
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 
GN=rhlB PE=3 SV=2
Length=421

 Score = 153 bits (387),  Expect = 2e-39, Method: Composition-based stats.
 Identities = 77/401 (19%), Positives = 128/401 (32%), Gaps = 58/401 (14%)

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
            +P    A  L  A   V           +    +    L  H     ++ N        P
Sbjct  33   TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAP  92

Query  229  FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR  286
              +L  ++        E    +L   +G   Y++Q+  L     +      R+     + 
Sbjct  93   TRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN  152

Query  287  YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE  337
            +        +++ +  R  D L  ++D          ++  A +RL  LF      R  E
Sbjct  153  HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPANQRLNMLFSATLSYRVRE  207

Query  338  LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ  378
            LA    +  E     P+ +   +I +  F  SN                 R IIF  T+ 
Sbjct  208  LAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH  267

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT  438
                +         L     R  LL G         + Q+ +  ++ +F  G L++LVAT
Sbjct  268  RCEEIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT  313

Query  439  SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE  497
             VA  GL IP    V  Y L  +    V   GR  RA  S ++         L       
Sbjct  314  DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP  369

Query  498  ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA  538
            A+ET +  ++   +        A + DL +     R     
Sbjct  370  AIETYIGHSIPVSKYNP----DALMTDLPKPLRLTRPRTGN  406


 Score = 43.2 bits (100),  Expect = 0.007, Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV  77
            TG GKT A       +L          V+  + +++     L  Q         D     
Sbjct  55   TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQ------IHADAEPLA  108

Query  78   TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH  134
                  +G   G     +   +L    ++L      L    ++ H+ L    ++V+DE  
Sbjct  109  EATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD  168

Query  135  H  135
             
Sbjct  169  R  169


>sp|Q0TAU3|RHLB_ECOL5 ATP-dependent RNA helicase RhlB OS=Escherichia 
coli O6:K15:H31 (strain 536 / UPEC) OX=362663 GN=rhlB 
PE=3 SV=1
Length=421

 Score = 153 bits (387),  Expect = 2e-39, Method: Composition-based stats.
 Identities = 77/401 (19%), Positives = 128/401 (32%), Gaps = 58/401 (14%)

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
            +P    A  L  A   V           +    +    L  H     ++ N        P
Sbjct  33   TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAP  92

Query  229  FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR  286
              +L  ++        E    +L   +G   Y++Q+  L     +      R+     + 
Sbjct  93   TRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN  152

Query  287  YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE  337
            +        +++ +  R  D L  ++D          ++  A +RL  LF      R  E
Sbjct  153  HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPANQRLNMLFSATLSYRVRE  207

Query  338  LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ  378
            LA    +  E     P+ +   +I +  F  SN                 R IIF  T+ 
Sbjct  208  LAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH  267

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT  438
                +         L     R  LL G         + Q+ +  ++ +F  G L++LVAT
Sbjct  268  RCEEIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT  313

Query  439  SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE  497
             VA  GL IP    V  Y L  +    V   GR  RA  S ++         L       
Sbjct  314  DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP  369

Query  498  ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA  538
            A+ET +  ++   +        A + DL +     R     
Sbjct  370  AIETYIGHSIPVSKYNP----DALMTDLPKPLRLTRPRTGN  406


 Score = 43.2 bits (100),  Expect = 0.007, Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV  77
            TG GKT A       +L          V+  + +++     L  Q         D     
Sbjct  55   TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQ------IHADAEPLA  108

Query  78   TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH  134
                  +G   G     +   +L    ++L      L    ++ H+ L    ++V+DE  
Sbjct  109  EATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD  168

Query  135  H  135
             
Sbjct  169  R  169


>sp|A1AHV0|RHLB_ECOK1 ATP-dependent RNA helicase RhlB OS=Escherichia 
coli O1:K1 / APEC OX=405955 GN=rhlB PE=3 SV=1
Length=421

 Score = 153 bits (387),  Expect = 2e-39, Method: Composition-based stats.
 Identities = 77/401 (19%), Positives = 128/401 (32%), Gaps = 58/401 (14%)

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
            +P    A  L  A   V           +    +    L  H     ++ N        P
Sbjct  33   TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAP  92

Query  229  FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR  286
              +L  ++        E    +L   +G   Y++Q+  L     +      R+     + 
Sbjct  93   TRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN  152

Query  287  YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE  337
            +        +++ +  R  D L  ++D          ++  A +RL  LF      R  E
Sbjct  153  HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPANQRLNMLFSATLSYRVRE  207

Query  338  LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ  378
            LA    +  E     P+ +   +I +  F  SN                 R IIF  T+ 
Sbjct  208  LAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH  267

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT  438
                +         L     R  LL G         + Q+ +  ++ +F  G L++LVAT
Sbjct  268  RCEEIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT  313

Query  439  SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE  497
             VA  GL IP    V  Y L  +    V   GR  RA  S ++         L       
Sbjct  314  DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP  369

Query  498  ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA  538
            A+ET +  ++   +        A + DL +     R     
Sbjct  370  AIETYIGHSIPVSKYNP----DALMTDLPKPLRLTRPRTGN  406


 Score = 43.2 bits (100),  Expect = 0.007, Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV  77
            TG GKT A       +L          V+  + +++     L  Q         D     
Sbjct  55   TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQ------IHADAEPLA  108

Query  78   TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH  134
                  +G   G     +   +L    ++L      L    ++ H+ L    ++V+DE  
Sbjct  109  EATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD  168

Query  135  H  135
             
Sbjct  169  R  169


>sp|A8A6N4|RHLB_ECOHS ATP-dependent RNA helicase RhlB OS=Escherichia 
coli O9:H4 (strain HS) OX=331112 GN=rhlB PE=3 SV=1
Length=421

 Score = 153 bits (387),  Expect = 2e-39, Method: Composition-based stats.
 Identities = 77/401 (19%), Positives = 128/401 (32%), Gaps = 58/401 (14%)

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
            +P    A  L  A   V           +    +    L  H     ++ N        P
Sbjct  33   TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAP  92

Query  229  FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR  286
              +L  ++        E    +L   +G   Y++Q+  L     +      R+     + 
Sbjct  93   TRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN  152

Query  287  YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE  337
            +        +++ +  R  D L  ++D          ++  A +RL  LF      R  E
Sbjct  153  HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPANQRLNMLFSATLSYRVRE  207

Query  338  LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ  378
            LA    +  E     P+ +   +I +  F  SN                 R IIF  T+ 
Sbjct  208  LAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH  267

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT  438
                +         L     R  LL G         + Q+ +  ++ +F  G L++LVAT
Sbjct  268  RCEEIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT  313

Query  439  SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE  497
             VA  GL IP    V  Y L  +    V   GR  RA  S ++         L       
Sbjct  314  DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP  369

Query  498  ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA  538
            A+ET +  ++   +        A + DL +     R     
Sbjct  370  AIETYIGHSIPVSKYNP----DALMTDLPKPLRLTRPRTGN  406


 Score = 43.2 bits (100),  Expect = 0.007, Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV  77
            TG GKT A       +L          V+  + +++     L  Q         D     
Sbjct  55   TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQ------IHADAEPLA  108

Query  78   TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH  134
                  +G   G     +   +L    ++L      L    ++ H+ L    ++V+DE  
Sbjct  109  EATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD  168

Query  135  H  135
             
Sbjct  169  R  169


>sp|B1X9Z4|RHLB_ECODH ATP-dependent RNA helicase RhlB OS=Escherichia 
coli (strain K12 / DH10B) OX=316385 GN=rhlB PE=3 SV=1
Length=421

 Score = 153 bits (387),  Expect = 2e-39, Method: Composition-based stats.
 Identities = 77/401 (19%), Positives = 128/401 (32%), Gaps = 58/401 (14%)

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
            +P    A  L  A   V           +    +    L  H     ++ N        P
Sbjct  33   TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAP  92

Query  229  FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR  286
              +L  ++        E    +L   +G   Y++Q+  L     +      R+     + 
Sbjct  93   TRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN  152

Query  287  YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE  337
            +        +++ +  R  D L  ++D          ++  A +RL  LF      R  E
Sbjct  153  HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPANQRLNMLFSATLSYRVRE  207

Query  338  LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ  378
            LA    +  E     P+ +   +I +  F  SN                 R IIF  T+ 
Sbjct  208  LAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH  267

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT  438
                +         L     R  LL G         + Q+ +  ++ +F  G L++LVAT
Sbjct  268  RCEEIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT  313

Query  439  SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE  497
             VA  GL IP    V  Y L  +    V   GR  RA  S ++         L       
Sbjct  314  DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP  369

Query  498  ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA  538
            A+ET +  ++   +        A + DL +     R     
Sbjct  370  AIETYIGHSIPVSKYNP----DALMTDLPKPLRLTRPRTGN  406


 Score = 43.2 bits (100),  Expect = 0.007, Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV  77
            TG GKT A       +L          V+  + +++     L  Q         D     
Sbjct  55   TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQ------IHADAEPLA  108

Query  78   TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH  134
                  +G   G     +   +L    ++L      L    ++ H+ L    ++V+DE  
Sbjct  109  EATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD  168

Query  135  H  135
             
Sbjct  169  R  169


>sp|C4ZZ48|RHLB_ECOBW ATP-dependent RNA helicase RhlB OS=Escherichia 
coli (strain K12 / MC4100 / BW2952) OX=595496 GN=rhlB 
PE=3 SV=1
Length=421

 Score = 153 bits (387),  Expect = 2e-39, Method: Composition-based stats.
 Identities = 77/401 (19%), Positives = 128/401 (32%), Gaps = 58/401 (14%)

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
            +P    A  L  A   V           +    +    L  H     ++ N        P
Sbjct  33   TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAP  92

Query  229  FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR  286
              +L  ++        E    +L   +G   Y++Q+  L     +      R+     + 
Sbjct  93   TRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN  152

Query  287  YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE  337
            +        +++ +  R  D L  ++D          ++  A +RL  LF      R  E
Sbjct  153  HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPANQRLNMLFSATLSYRVRE  207

Query  338  LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ  378
            LA    +  E     P+ +   +I +  F  SN                 R IIF  T+ 
Sbjct  208  LAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH  267

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT  438
                +         L     R  LL G         + Q+ +  ++ +F  G L++LVAT
Sbjct  268  RCEEIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT  313

Query  439  SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE  497
             VA  GL IP    V  Y L  +    V   GR  RA  S ++         L       
Sbjct  314  DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP  369

Query  498  ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA  538
            A+ET +  ++   +        A + DL +     R     
Sbjct  370  AIETYIGHSIPVSKYNP----DALMTDLPKPLRLTRPRTGN  406


 Score = 43.2 bits (100),  Expect = 0.007, Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV  77
            TG GKT A       +L          V+  + +++     L  Q         D     
Sbjct  55   TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQ------IHADAEPLA  108

Query  78   TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH  134
                  +G   G     +   +L    ++L      L    ++ H+ L    ++V+DE  
Sbjct  109  EATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD  168

Query  135  H  135
             
Sbjct  169  R  169


>sp|B7M5C7|RHLB_ECO8A ATP-dependent RNA helicase RhlB OS=Escherichia 
coli O8 (strain IAI1) OX=585034 GN=rhlB PE=3 SV=1
Length=421

 Score = 153 bits (387),  Expect = 2e-39, Method: Composition-based stats.
 Identities = 77/401 (19%), Positives = 128/401 (32%), Gaps = 58/401 (14%)

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
            +P    A  L  A   V           +    +    L  H     ++ N        P
Sbjct  33   TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAP  92

Query  229  FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR  286
              +L  ++        E    +L   +G   Y++Q+  L     +      R+     + 
Sbjct  93   TRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN  152

Query  287  YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE  337
            +        +++ +  R  D L  ++D          ++  A +RL  LF      R  E
Sbjct  153  HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPANQRLNMLFSATLSYRVRE  207

Query  338  LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ  378
            LA    +  E     P+ +   +I +  F  SN                 R IIF  T+ 
Sbjct  208  LAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH  267

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT  438
                +         L     R  LL G         + Q+ +  ++ +F  G L++LVAT
Sbjct  268  RCEEIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT  313

Query  439  SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE  497
             VA  GL IP    V  Y L  +    V   GR  RA  S ++         L       
Sbjct  314  DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP  369

Query  498  ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA  538
            A+ET +  ++   +        A + DL +     R     
Sbjct  370  AIETYIGHSIPVSKYNP----DALMTDLPKPLRLTRPRTGN  406


 Score = 43.2 bits (100),  Expect = 0.007, Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV  77
            TG GKT A       +L          V+  + +++     L  Q         D     
Sbjct  55   TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQ------IHADAEPLA  108

Query  78   TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH  134
                  +G   G     +   +L    ++L      L    ++ H+ L    ++V+DE  
Sbjct  109  EATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD  168

Query  135  H  135
             
Sbjct  169  R  169


>sp|B7MR01|RHLB_ECO81 ATP-dependent RNA helicase RhlB OS=Escherichia 
coli O81 (strain ED1a) OX=585397 GN=rhlB PE=3 SV=1
Length=421

 Score = 153 bits (387),  Expect = 2e-39, Method: Composition-based stats.
 Identities = 77/401 (19%), Positives = 128/401 (32%), Gaps = 58/401 (14%)

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
            +P    A  L  A   V           +    +    L  H     ++ N        P
Sbjct  33   TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAP  92

Query  229  FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR  286
              +L  ++        E    +L   +G   Y++Q+  L     +      R+     + 
Sbjct  93   TRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN  152

Query  287  YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE  337
            +        +++ +  R  D L  ++D          ++  A +RL  LF      R  E
Sbjct  153  HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPANQRLNMLFSATLSYRVRE  207

Query  338  LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ  378
            LA    +  E     P+ +   +I +  F  SN                 R IIF  T+ 
Sbjct  208  LAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH  267

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT  438
                +         L     R  LL G         + Q+ +  ++ +F  G L++LVAT
Sbjct  268  RCEEIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT  313

Query  439  SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE  497
             VA  GL IP    V  Y L  +    V   GR  RA  S ++         L       
Sbjct  314  DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP  369

Query  498  ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA  538
            A+ET +  ++   +        A + DL +     R     
Sbjct  370  AIETYIGHSIPVSKYNP----DALMTDLPKPLRLTRPRTGN  406


 Score = 43.2 bits (100),  Expect = 0.007, Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV  77
            TG GKT A       +L          V+  + +++     L  Q         D     
Sbjct  55   TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQ------IHADAEPLA  108

Query  78   TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH  134
                  +G   G     +   +L    ++L      L    ++ H+ L    ++V+DE  
Sbjct  109  EATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD  168

Query  135  H  135
             
Sbjct  169  R  169


>sp|B7L8B6|RHLB_ECO55 ATP-dependent RNA helicase RhlB OS=Escherichia 
coli (strain 55989 / EAEC) OX=585055 GN=rhlB PE=3 SV=1
Length=421

 Score = 153 bits (387),  Expect = 2e-39, Method: Composition-based stats.
 Identities = 77/401 (19%), Positives = 128/401 (32%), Gaps = 58/401 (14%)

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
            +P    A  L  A   V           +    +    L  H     ++ N        P
Sbjct  33   TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAP  92

Query  229  FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR  286
              +L  ++        E    +L   +G   Y++Q+  L     +      R+     + 
Sbjct  93   TRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN  152

Query  287  YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE  337
            +        +++ +  R  D L  ++D          ++  A +RL  LF      R  E
Sbjct  153  HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPANQRLNMLFSATLSYRVRE  207

Query  338  LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ  378
            LA    +  E     P+ +   +I +  F  SN                 R IIF  T+ 
Sbjct  208  LAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH  267

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT  438
                +         L     R  LL G         + Q+ +  ++ +F  G L++LVAT
Sbjct  268  RCEEIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT  313

Query  439  SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE  497
             VA  GL IP    V  Y L  +    V   GR  RA  S ++         L       
Sbjct  314  DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP  369

Query  498  ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA  538
            A+ET +  ++   +        A + DL +     R     
Sbjct  370  AIETYIGHSIPVSKYNP----DALMTDLPKPLRLTRPRTGN  406


 Score = 43.2 bits (100),  Expect = 0.007, Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV  77
            TG GKT A       +L          V+  + +++     L  Q         D     
Sbjct  55   TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQ------IHADAEPLA  108

Query  78   TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH  134
                  +G   G     +   +L    ++L      L    ++ H+ L    ++V+DE  
Sbjct  109  EATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD  168

Query  135  H  135
             
Sbjct  169  R  169


>sp|B7MGJ1|RHLB_ECO45 ATP-dependent RNA helicase RhlB OS=Escherichia 
coli O45:K1 (strain S88 / ExPEC) OX=585035 GN=rhlB PE=3 
SV=1
Length=421

 Score = 153 bits (387),  Expect = 2e-39, Method: Composition-based stats.
 Identities = 77/401 (19%), Positives = 128/401 (32%), Gaps = 58/401 (14%)

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
            +P    A  L  A   V           +    +    L  H     ++ N        P
Sbjct  33   TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAP  92

Query  229  FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR  286
              +L  ++        E    +L   +G   Y++Q+  L     +      R+     + 
Sbjct  93   TRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN  152

Query  287  YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE  337
            +        +++ +  R  D L  ++D          ++  A +RL  LF      R  E
Sbjct  153  HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPANQRLNMLFSATLSYRVRE  207

Query  338  LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ  378
            LA    +  E     P+ +   +I +  F  SN                 R IIF  T+ 
Sbjct  208  LAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH  267

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT  438
                +         L     R  LL G         + Q+ +  ++ +F  G L++LVAT
Sbjct  268  RCEEIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT  313

Query  439  SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE  497
             VA  GL IP    V  Y L  +    V   GR  RA  S ++         L       
Sbjct  314  DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP  369

Query  498  ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA  538
            A+ET +  ++   +        A + DL +     R     
Sbjct  370  AIETYIGHSIPVSKYNP----DALMTDLPKPLRLTRPRTGN  406


 Score = 43.2 bits (100),  Expect = 0.007, Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV  77
            TG GKT A       +L          V+  + +++     L  Q         D     
Sbjct  55   TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQ------IHADAEPLA  108

Query  78   TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH  134
                  +G   G     +   +L    ++L      L    ++ H+ L    ++V+DE  
Sbjct  109  EATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD  168

Query  135  H  135
             
Sbjct  169  R  169


>sp|B7UMN5|RHLB_ECO27 ATP-dependent RNA helicase RhlB OS=Escherichia 
coli O127:H6 (strain E2348/69 / EPEC) OX=574521 GN=rhlB 
PE=3 SV=1
Length=421

 Score = 153 bits (387),  Expect = 2e-39, Method: Composition-based stats.
 Identities = 77/401 (19%), Positives = 128/401 (32%), Gaps = 58/401 (14%)

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
            +P    A  L  A   V           +    +    L  H     ++ N        P
Sbjct  33   TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAP  92

Query  229  FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR  286
              +L  ++        E    +L   +G   Y++Q+  L     +      R+     + 
Sbjct  93   TRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN  152

Query  287  YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE  337
            +        +++ +  R  D L  ++D          ++  A +RL  LF      R  E
Sbjct  153  HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPANQRLNMLFSATLSYRVRE  207

Query  338  LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ  378
            LA    +  E     P+ +   +I +  F  SN                 R IIF  T+ 
Sbjct  208  LAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH  267

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT  438
                +         L     R  LL G         + Q+ +  ++ +F  G L++LVAT
Sbjct  268  RCEEIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT  313

Query  439  SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE  497
             VA  GL IP    V  Y L  +    V   GR  RA  S ++         L       
Sbjct  314  DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP  369

Query  498  ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA  538
            A+ET +  ++   +        A + DL +     R     
Sbjct  370  AIETYIGHSIPVSKYNP----DALMTDLPKPLRLTRPRTGN  406


 Score = 43.2 bits (100),  Expect = 0.007, Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV  77
            TG GKT A       +L          V+  + +++     L  Q         D     
Sbjct  55   TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQ------IHADAEPLA  108

Query  78   TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH  134
                  +G   G     +   +L    ++L      L    ++ H+ L    ++V+DE  
Sbjct  109  EATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD  168

Query  135  H  135
             
Sbjct  169  R  169


>sp|A7ZTY2|RHLB_ECO24 ATP-dependent RNA helicase RhlB OS=Escherichia 
coli O139:H28 (strain E24377A / ETEC) OX=331111 GN=rhlB 
PE=3 SV=1
Length=421

 Score = 153 bits (387),  Expect = 2e-39, Method: Composition-based stats.
 Identities = 77/401 (19%), Positives = 128/401 (32%), Gaps = 58/401 (14%)

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
            +P    A  L  A   V           +    +    L  H     ++ N        P
Sbjct  33   TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAP  92

Query  229  FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR  286
              +L  ++        E    +L   +G   Y++Q+  L     +      R+     + 
Sbjct  93   TRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN  152

Query  287  YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE  337
            +        +++ +  R  D L  ++D          ++  A +RL  LF      R  E
Sbjct  153  HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPANQRLNMLFSATLSYRVRE  207

Query  338  LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ  378
            LA    +  E     P+ +   +I +  F  SN                 R IIF  T+ 
Sbjct  208  LAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH  267

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT  438
                +         L     R  LL G         + Q+ +  ++ +F  G L++LVAT
Sbjct  268  RCEEIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT  313

Query  439  SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE  497
             VA  GL IP    V  Y L  +    V   GR  RA  S ++         L       
Sbjct  314  DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP  369

Query  498  ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA  538
            A+ET +  ++   +        A + DL +     R     
Sbjct  370  AIETYIGHSIPVSKYNP----DALMTDLPKPLRLTRPRTGN  406


 Score = 43.2 bits (100),  Expect = 0.007, Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV  77
            TG GKT A       +L          V+  + +++     L  Q         D     
Sbjct  55   TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQ------IHADAEPLA  108

Query  78   TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH  134
                  +G   G     +   +L    ++L      L    ++ H+ L    ++V+DE  
Sbjct  109  EATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD  168

Query  135  H  135
             
Sbjct  169  R  169


>sp|Q31UK5|RHLB_SHIBS ATP-dependent RNA helicase RhlB OS=Shigella 
boydii serotype 4 (strain Sb227) OX=300268 GN=rhlB PE=3 
SV=1
Length=421

 Score = 153 bits (386),  Expect = 3e-39, Method: Composition-based stats.
 Identities = 77/401 (19%), Positives = 128/401 (32%), Gaps = 58/401 (14%)

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
            +P    A  L  A   V           +    +    L  H     ++ N        P
Sbjct  33   TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAP  92

Query  229  FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR  286
              +L  ++        E    +L   +G   Y++Q+  L     +      R+     + 
Sbjct  93   TRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN  152

Query  287  YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE  337
            +        +++ +  R  D L  ++D          ++  A +RL  LF      R  E
Sbjct  153  HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPANQRLNMLFSATLSYRVRE  207

Query  338  LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ  378
            LA    +  E     P+ +   +I +  F  SN                 R IIF  T+ 
Sbjct  208  LAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH  267

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT  438
                +         L     R  LL G         + Q+ +  ++ +F  G L++LVAT
Sbjct  268  RCEEIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT  313

Query  439  SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE  497
             VA  GL IP    V  Y L  +    V   GR  RA  S ++         L       
Sbjct  314  DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP  369

Query  498  ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA  538
            A+ET +  ++   +        A + DL +     R     
Sbjct  370  AIETYIGHSIPVSKYNP----DALMTDLPKPLRLTRPRTGN  406


 Score = 43.2 bits (100),  Expect = 0.007, Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV  77
            TG GKT A       +L          V+  + +++     L  Q         D     
Sbjct  55   TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQ------IHADAEPLA  108

Query  78   TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH  134
                  +G   G     +   +L    ++L      L    ++ H+ L    ++V+DE  
Sbjct  109  EATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD  168

Query  135  H  135
             
Sbjct  169  R  169


>sp|B2TU12|RHLB_SHIB3 ATP-dependent RNA helicase RhlB OS=Shigella 
boydii serotype 18 (strain CDC 3083-94 / BS512) OX=344609 
GN=rhlB PE=3 SV=1
Length=421

 Score = 153 bits (386),  Expect = 3e-39, Method: Composition-based stats.
 Identities = 77/401 (19%), Positives = 128/401 (32%), Gaps = 58/401 (14%)

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
            +P    A  L  A   V           +    +    L  H     ++ N        P
Sbjct  33   TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAP  92

Query  229  FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR  286
              +L  ++        E    +L   +G   Y++Q+  L     +      R+     + 
Sbjct  93   TRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN  152

Query  287  YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE  337
            +        +++ +  R  D L  ++D          ++  A +RL  LF      R  E
Sbjct  153  HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPANQRLNMLFSATLSYRVRE  207

Query  338  LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ  378
            LA    +  E     P+ +   +I +  F  SN                 R IIF  T+ 
Sbjct  208  LAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH  267

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT  438
                +         L     R  LL G         + Q+ +  ++ +F  G L++LVAT
Sbjct  268  RCEEIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT  313

Query  439  SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE  497
             VA  GL IP    V  Y L  +    V   GR  RA  S ++         L       
Sbjct  314  DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP  369

Query  498  ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA  538
            A+ET +  ++   +        A + DL +     R     
Sbjct  370  AIETYIGHSIPVSKYNP----DALMTDLPKPLRLTRPRTGN  406


 Score = 43.2 bits (100),  Expect = 0.007, Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV  77
            TG GKT A       +L          V+  + +++     L  Q         D     
Sbjct  55   TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQ------IHADAEPLA  108

Query  78   TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH  134
                  +G   G     +   +L    ++L      L    ++ H+ L    ++V+DE  
Sbjct  109  EATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD  168

Query  135  H  135
             
Sbjct  169  R  169


>sp|B7NF85|RHLB_ECOLU ATP-dependent RNA helicase RhlB OS=Escherichia 
coli O17:K52:H18 (strain UMN026 / ExPEC) OX=585056 GN=rhlB 
PE=3 SV=1
Length=421

 Score = 153 bits (386),  Expect = 3e-39, Method: Composition-based stats.
 Identities = 77/401 (19%), Positives = 128/401 (32%), Gaps = 58/401 (14%)

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
            +P    A  L  A   V           +    +    L  H     ++ N        P
Sbjct  33   TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAP  92

Query  229  FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR  286
              +L  ++        E    +L   +G   Y++Q+  L     +      R+     + 
Sbjct  93   TRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN  152

Query  287  YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE  337
            +        +++ +  R  D L  ++D          ++  A +RL  LF      R  E
Sbjct  153  HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPANQRLNMLFSATLSYRVRE  207

Query  338  LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ  378
            LA    +  E     P+ +   +I +  F  SN                 R IIF  T+ 
Sbjct  208  LAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH  267

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT  438
                +         L     R  LL G         + Q+ +  ++ +F  G L++LVAT
Sbjct  268  RCEEIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT  313

Query  439  SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE  497
             VA  GL IP    V  Y L  +    V   GR  RA  S ++         L       
Sbjct  314  DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP  369

Query  498  ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA  538
            A+ET +  ++   +        A + DL +     R     
Sbjct  370  AIETYIGHSIPVSKYNP----DALMTDLPKPLRLTRPRTGN  406


 Score = 43.2 bits (100),  Expect = 0.007, Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV  77
            TG GKT A       +L          V+  + +++     L  Q         D     
Sbjct  55   TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQ------IHADAEPLA  108

Query  78   TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH  134
                  +G   G     +   +L    ++L      L    ++ H+ L    ++V+DE  
Sbjct  109  EATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD  168

Query  135  H  135
             
Sbjct  169  R  169


>sp|B5YY28|RHLB_ECO5E ATP-dependent RNA helicase RhlB OS=Escherichia 
coli O157:H7 (strain EC4115 / EHEC) OX=444450 GN=rhlB 
PE=3 SV=1
Length=421

 Score = 153 bits (386),  Expect = 3e-39, Method: Composition-based stats.
 Identities = 72/363 (20%), Positives = 120/363 (33%), Gaps = 58/363 (16%)

Query  207  LQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVK  264
            L  H     ++ N        P  +L  ++        E    +L   +G   Y++Q+  
Sbjct  71   LLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKV  130

Query  265  LSEAAALAGLQEQRVYALHLRRYN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQ  319
            L     +      R+     + +        +++ +  R  D L  ++D          +
Sbjct  131  LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----R  185

Query  320  ILCAERRLLALFDD----RKNELAHLATHGPEN----PKLEMLEKILQRQFSSSNS----  367
            +  A +RL  LF      R  ELA    +  E     P+ +   +I +  F  SN     
Sbjct  186  MPPANQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMR  245

Query  368  -----------PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT  416
                        R IIF  T+     +         L     R  LL G         + 
Sbjct  246  LLQTLIEEEWPDRAIIFANTKHRCEEIW------GHLAADGHRVGLLTG--------DVA  291

Query  417  QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARAD  475
            Q+ +  ++ +F  G L++LVAT VA  GL IP    V  Y L  +    V   GR  RA 
Sbjct  292  QKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAG  351

Query  476  QSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAA  535
             S ++         L       A+ET +  ++   +        A + DL +     R  
Sbjct  352  ASGHSISLACEEYALN----LPAIETYIGHSIPVSKYNP----DALMTDLPKPLRLTRPR  403

Query  536  QAA  538
               
Sbjct  404  TGN  406


>sp|Q0SYX0|RHLB_SHIF8 ATP-dependent RNA helicase RhlB OS=Shigella 
flexneri serotype 5b (strain 8401) OX=373384 GN=rhlB PE=3 
SV=1
Length=421

 Score = 153 bits (385),  Expect = 3e-39, Method: Composition-based stats.
 Identities = 77/401 (19%), Positives = 128/401 (32%), Gaps = 58/401 (14%)

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
            +P    A  L  A   V           +    +    L  H     ++ N        P
Sbjct  33   TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAP  92

Query  229  FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR  286
              +L  ++        E    +L   +G   Y++Q+  L     +      R+     + 
Sbjct  93   TRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN  152

Query  287  YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE  337
            +        +++ +  R  D L  ++D          ++  A +RL  LF      R  E
Sbjct  153  HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPANQRLNMLFSATLSYRVRE  207

Query  338  LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ  378
            LA    +  E     P+ +   +I +  F  SN                 R IIF  T+ 
Sbjct  208  LAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH  267

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT  438
                +         L     R  LL G         + Q+ +  ++ +F  G L++LVAT
Sbjct  268  RCEEIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT  313

Query  439  SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE  497
             VA  GL IP    V  Y L  +    V   GR  RA  S ++         L       
Sbjct  314  DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP  369

Query  498  ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA  538
            A+E  +  ++   +        A + DL +     RA    
Sbjct  370  AIENYIGHSILVSKYNP----DALMTDLPKPLRLTRARTGN  406


 Score = 43.2 bits (100),  Expect = 0.007, Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV  77
            TG GKT A       +L          V+  + +++     L  Q         D     
Sbjct  55   TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQ------IHADAEPLA  108

Query  78   TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH  134
                  +G   G     +   +L    ++L      L    ++ H+ L    ++V+DE  
Sbjct  109  EATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD  168

Query  135  H  135
             
Sbjct  169  R  169


>sp|B7LU75|RHLB_ESCF3 ATP-dependent RNA helicase RhlB OS=Escherichia 
fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 
/ IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 
/ CDC 0568-73) OX=585054 GN=rhlB PE=3 SV=1
Length=421

 Score = 153 bits (385),  Expect = 4e-39, Method: Composition-based stats.
 Identities = 76/401 (19%), Positives = 128/401 (32%), Gaps = 58/401 (14%)

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
            +P    A  L  A   V           +    +    L  H     ++ N        P
Sbjct  33   TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAP  92

Query  229  FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR  286
              +L  ++        +    +L   +G   Y++Q+  L     +      R+     + 
Sbjct  93   TRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN  152

Query  287  YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE  337
            +        +++ +  R  D L  ++D          ++  A +RL  LF      R  E
Sbjct  153  HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPANQRLNMLFSATLSYRVRE  207

Query  338  LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ  378
            LA    +  E     P+ +   +I +  F  SN                 R IIF  T+ 
Sbjct  208  LAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH  267

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT  438
                +         L     R  LL G         + Q+ +  ++ +F  G L++LVAT
Sbjct  268  RCEEIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT  313

Query  439  SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE  497
             VA  GL IP    V  Y L  +    V   GR  RA  S ++         L       
Sbjct  314  DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP  369

Query  498  ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA  538
            A+ET +  ++   +        A + DL +     R     
Sbjct  370  AIETYIGHSIPVSKYNP----DALMTDLPKPLRLTRPRTGN  406


 Score = 43.6 bits (101),  Expect = 0.005, Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV  77
            TG GKT A       +L          V+  + +++     L  Q         D     
Sbjct  55   TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQ------IHADAEPLA  108

Query  78   TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH  134
                  +G   G     +   +L    ++L      L    ++ H+ L    ++V+DE  
Sbjct  109  QATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD  168

Query  135  H  135
             
Sbjct  169  R  169


>sp|Q8XAT4|RHLB_ECO57 ATP-dependent RNA helicase RhlB OS=Escherichia 
coli O157:H7 OX=83334 GN=rhlB PE=3 SV=3
Length=421

 Score = 153 bits (385),  Expect = 4e-39, Method: Composition-based stats.
 Identities = 72/365 (20%), Positives = 121/365 (33%), Gaps = 62/365 (17%)

Query  207  LQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVK  264
            L  H     ++ N        P  +L  ++        E    +L   +G   Y++Q+  
Sbjct  71   LLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKV  130

Query  265  LSEAAALAGLQEQRVYALHLRRYN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQ  319
            L     +      R+     + +        +++ +  R  D L  ++D          +
Sbjct  131  LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----R  185

Query  320  ILCAERRLLALFDD----RKNELAHLATHGPEN----PKLEMLEKILQRQFSSSNS----  367
            +  A +RL  LF      R  ELA    +  E     P+ +   +I +  F  SN     
Sbjct  186  MPPANQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMR  245

Query  368  -----------PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT  416
                        R IIF  T+     +         L     R  LL G         + 
Sbjct  246  LLQTLIEEEWPDRAIIFANTKHRCEEIW------GHLAADGHRVGLLTG--------DVA  291

Query  417  QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR---GRAR  473
            Q+ +  ++ +F  G L++LVAT VA  GL IP    V  Y L  +    V      GRA 
Sbjct  292  QKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAG  351

Query  474  ADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKR  533
            A+    +    E +  L       A+ET +  ++   +        A + DL +     R
Sbjct  352  ANGHSISLACEEYALNLP------AIETYIGHSIPVSKYNP----DALMTDLPKPLRLTR  401

Query  534  AAQAA  538
                 
Sbjct  402  PRTGN  406


>sp|A8G0U0|RHLB_SHESH ATP-dependent RNA helicase RhlB OS=Shewanella 
sediminis (strain HAW-EB3) OX=425104 GN=rhlB PE=3 SV=1
Length=435

 Score = 153 bits (386),  Expect = 4e-39, Method: Composition-based stats.
 Identities = 63/317 (20%), Positives = 113/317 (36%), Gaps = 60/317 (19%)

Query  253  FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR-----RYNDALLIHDTVRAVDALAALQ  307
            +G + YE Q   L +   +      R+     +         A+++ +  R  D L  ++
Sbjct  119  YGGESYEVQRKVLDKGVDILIGTTGRIIDYVRQGIINVSAIQAVVLDEADRMFD-LGFIK  177

Query  308  DFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPE----------------  347
            D          ++  A+ RL  LF      +  ELA+   + PE                
Sbjct  178  DIRFLFR----RMPDAKSRLNMLFSATLSMKVQELAYDHMNEPEKVEIAPNEKTSKNIKE  233

Query  348  ---NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI  404
                P ++   ++L          + I+F+ T+ S   L  WL      +    R  LL 
Sbjct  234  EIFYPSMDEKMRLLLTLLEEDWPDKAIVFSNTKHSCEKLWSWL------EGDGHRVGLLT  287

Query  405  GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
            G         + Q+ +  +++ F +G L++LVAT VA  GL I   + V  Y L  +   
Sbjct  288  G--------DVPQKKRIRILELFTEGKLDVLVATDVAARGLHISDVSHVYNYDLPDDCED  339

Query  465  MVQARGR-ARADQSV--YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK  521
             V   GR  RA +     +F   E +  L       A+E  +   +     +   + +A 
Sbjct  340  YVHRIGRTGRAGKKGVSVSFACEEYALNLP------AIEEYINHTIP----VTNYDSEAL  389

Query  522  IRDLQQAALTKRAAQAA  538
            + D+       R   + 
Sbjct  390  LDDIPAPVRVHRKHNSR  406


 Score = 45.2 bits (105),  Expect = 0.002, Method: Composition-based stats.
 Identities = 20/121 (17%), Positives = 41/121 (34%), Gaps = 17/121 (14%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEE---FRRMLDGR  74
            TG GKT A       HL          ++  + +++     L  Q  ++     +    +
Sbjct  55   TGTGKTLAFLVATFNHLLTTPIPEGRQLNQPRAIIMAPTRELAIQIAKDADLLAKHTGLK  114

Query  75   WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECH  134
              V  + G          L +  D+LI T   +   +     +  + ++    +V+DE  
Sbjct  115  --VGIVYGGESYEVQRKVLDKGVDILIGTTGRIIDYV----RQGIINVSAIQAVVLDEAD  168

Query  135  H  135
             
Sbjct  169  R  169


>sp|B7NTG2|RHLB_ECO7I ATP-dependent RNA helicase RhlB OS=Escherichia 
coli O7:K1 (strain IAI39 / ExPEC) OX=585057 GN=rhlB PE=3 
SV=1
Length=421

 Score = 153 bits (385),  Expect = 5e-39, Method: Composition-based stats.
 Identities = 76/401 (19%), Positives = 128/401 (32%), Gaps = 58/401 (14%)

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
            +P    A  L  A   V           +    +    L  H     ++ N        P
Sbjct  33   TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAP  92

Query  229  FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR  286
              +L  ++        +    +L   +G   Y++Q+  L     +      R+     + 
Sbjct  93   TRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN  152

Query  287  YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE  337
            +        +++ +  R  D L  ++D          ++  A +RL  LF      R  E
Sbjct  153  HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPANQRLNMLFSATLSYRVRE  207

Query  338  LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ  378
            LA    +  E     P+ +   +I +  F  SN                 R IIF  T+ 
Sbjct  208  LAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH  267

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT  438
                +         L     R  LL G         + Q+ +  ++ +F  G L++LVAT
Sbjct  268  RCEEIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT  313

Query  439  SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE  497
             VA  GL IP    V  Y L  +    V   GR  RA  S ++         L       
Sbjct  314  DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP  369

Query  498  ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA  538
            A+ET +  ++   +        A + DL +     R     
Sbjct  370  AIETYIGHSIPVSKYNP----DALMTDLPKPLRLTRPRTGN  406


 Score = 43.6 bits (101),  Expect = 0.005, Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV  77
            TG GKT A       +L          V+  + +++     L  Q         D     
Sbjct  55   TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQ------IHADAEPLA  108

Query  78   TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH  134
                  +G   G     +   +L    ++L      L    ++ H+ L    ++V+DE  
Sbjct  109  QATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD  168

Query  135  H  135
             
Sbjct  169  R  169


>sp|A8ACT3|RHLB_CITK8 ATP-dependent RNA helicase RhlB OS=Citrobacter 
koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) 
OX=290338 GN=rhlB PE=3 SV=1
Length=421

 Score = 152 bits (384),  Expect = 5e-39, Method: Composition-based stats.
 Identities = 68/363 (19%), Positives = 121/363 (33%), Gaps = 58/363 (16%)

Query  207  LQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVK  264
            L  H     ++ N        P  +L  ++        +    +L   +G   Y++Q+  
Sbjct  71   LLSHPAIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQTTGLKLGLAYGGDGYDKQLKV  130

Query  265  LSEAAALAGLQEQRVYALHLRRYN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQ  319
            L     +      R+     + +        +++ +  R  D L  ++D          +
Sbjct  131  LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----R  185

Query  320  ILCAERRLLALFDD----RKNELAHLATHGPEN----PKLEMLEKILQRQFSSSNS----  367
            +  A +RL  LF      R  ELA    +  E     P+ +   +I +  F  SN     
Sbjct  186  MPPANQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMR  245

Query  368  -----------PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT  416
                        R I+F  T+     +         L     R  LL G         + 
Sbjct  246  LLQTLIEEEWPDRAIVFANTKHRCEDIW------GHLAADGHRVGLLTG--------DVA  291

Query  417  QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARAD  475
            Q+ +  ++ +F  G L++LVAT VA  GL IP    V  Y L  +    V   GR  RA 
Sbjct  292  QKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAG  351

Query  476  QSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAA  535
             S ++         L       A+E  +  ++   +   +    A + +L +     R+ 
Sbjct  352  ASGHSISLACEEYALN----LPAIEAYIGHSIPVSKYNPE----ALMTNLPKPLRLTRSR  403

Query  536  QAA  538
               
Sbjct  404  PGN  406


 Score = 43.6 bits (101),  Expect = 0.005, Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 40/121 (33%), Gaps = 17/121 (14%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV  77
            TG GKT A    +  +L          V+  + +++     L  Q         D     
Sbjct  55   TGTGKTMAFLTSSFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQ------IHADAEPLA  108

Query  78   TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH  134
             T    +G   G     +   +L    ++L      L    ++ H+ L    ++V+DE  
Sbjct  109  QTTGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD  168

Query  135  H  135
             
Sbjct  169  R  169


>sp|B1LLV3|RHLB_ECOSM ATP-dependent RNA helicase RhlB OS=Escherichia 
coli (strain SMS-3-5 / SECEC) OX=439855 GN=rhlB PE=3 
SV=1
Length=421

 Score = 152 bits (384),  Expect = 5e-39, Method: Composition-based stats.
 Identities = 76/401 (19%), Positives = 128/401 (32%), Gaps = 58/401 (14%)

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
            +P    A  L  A   V           +    +    L  H     ++ N        P
Sbjct  33   TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAP  92

Query  229  FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR  286
              +L  ++        +    +L   +G   Y++Q+  L     +      R+     + 
Sbjct  93   TRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN  152

Query  287  YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE  337
            +        +++ +  R  D L  ++D          ++  A +RL  LF      R  E
Sbjct  153  HINLCAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPANQRLNMLFSATLSYRVRE  207

Query  338  LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ  378
            LA    +  E     P+ +   +I +  F  SN                 R IIF  T+ 
Sbjct  208  LAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH  267

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT  438
                +         L     R  LL G         + Q+ +  ++ +F  G L++LVAT
Sbjct  268  RCEEIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT  313

Query  439  SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE  497
             VA  GL IP    V  Y L  +    V   GR  RA  S ++         L       
Sbjct  314  DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP  369

Query  498  ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA  538
            A+ET +  ++   +        A + DL +     R     
Sbjct  370  AIETYIGHSIPVSKYNP----DALMTDLPKPLRLTRPRTGN  406


 Score = 42.9 bits (99),  Expect = 0.009, Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV  77
            TG GKT A       +L          V+  + +++     L  Q         D     
Sbjct  55   TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQ------IHADAEPLA  108

Query  78   TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH  134
                  +G   G     +   +L    ++L      L    ++ H+ L    ++V+DE  
Sbjct  109  QATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLCAIQVVVLDEAD  168

Query  135  H  135
             
Sbjct  169  R  169


>sp|B5XYY9|RHLB_KLEP3 ATP-dependent RNA helicase RhlB OS=Klebsiella 
pneumoniae (strain 342) OX=507522 GN=rhlB PE=3 SV=1
Length=421

 Score = 152 bits (384),  Expect = 5e-39, Method: Composition-based stats.
 Identities = 71/361 (20%), Positives = 120/361 (33%), Gaps = 62/361 (17%)

Query  207  LQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVK  264
            L  H     +Q N        P  +L  ++        +    +L   +G   Y++Q+  
Sbjct  71   LLSHPAIADRQVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKV  130

Query  265  LSEAAALAGLQEQRVYALHLRRYN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQ  319
            L     +      R+     + +        +++ +  R  D L  ++D          +
Sbjct  131  LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----R  185

Query  320  ILCAERRLLALFDD----RKNELAHLATHGPENPKLE-------------------MLEK  356
            +  A +RL  LF      R  ELA    +  E  ++E                      +
Sbjct  186  MPPATQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMR  245

Query  357  ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT  416
            +LQ         R IIF  T+     +         L     R  LL G         + 
Sbjct  246  LLQTLLEEEWPDRAIIFANTKHRCEDIW------GHLAADGHRVGLLTG--------DVA  291

Query  417  QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR---GRAR  473
            Q+ +  ++ +F  G L++LVAT VA  GL IP    V  Y L  +    V      GRA 
Sbjct  292  QKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAG  351

Query  474  ADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKR  533
            A  +  +    E +  L       A+ET +  ++   +        A + DL +     R
Sbjct  352  ASGNSISLACEEYALNLP------AIETYIGHSIPVSKYNP----DALMTDLPKPLRLTR  401

Query  534  A  534
            A
Sbjct  402  A  402


 Score = 43.6 bits (101),  Expect = 0.005, Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV  77
            TG GKT A       +L          V+  + +++     L  Q         D     
Sbjct  55   TGTGKTMAFLTSTFHYLLSHPAIADRQVNQPRALIMAPTRELAVQ------IHADAEPLA  108

Query  78   TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH  134
                  +G   G     +   +L    ++L      L    ++ H+ L    ++V+DE  
Sbjct  109  QATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD  168

Query  135  H  135
             
Sbjct  169  R  169


>sp|A5UI36|RHLB_HAEIG ATP-dependent RNA helicase RhlB OS=Haemophilus 
influenzae (strain PittGG) OX=374931 GN=rhlB PE=3 SV=1
Length=415

 Score = 152 bits (384),  Expect = 5e-39, Method: Composition-based stats.
 Identities = 70/354 (20%), Positives = 125/354 (35%), Gaps = 63/354 (18%)

Query  214  PCKQYNLCHRRSQDPFGDLLKKLMD--QIHDHLEMPELSRKFGTQMYEQQVVKLSEAAAL  271
            P  +Y         P  +L  ++ +  +        + +  +G   Y++Q+  +     +
Sbjct  77   PNLEYPHPRALILAPTRELAVQISNDAEFLAKASGLKTALAYGGDGYDKQLQVIECGVDI  136

Query  272  AGLQEQRVYALHLRRYN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERR  326
                  RV     +          +++ +  R  D L  ++D  +       +    + R
Sbjct  137  LIGTTGRVIDYVKQGVIGLDEIQVVVLDEADRMFD-LGFIRDIRY----LLRKCPAPQAR  191

Query  327  LLALFDD----RKNELAHLATHGPEN----PKLEMLEKILQRQFSSSNSP----------  368
            L  LF      +  ELA    + PE     P+ +   +I +  F  SN            
Sbjct  192  LTMLFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKEELFYPSNQDKMALLLTLME  251

Query  369  -----RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEV  423
                 R I+F  T+     +  +L           R  LL G         + Q+ +  +
Sbjct  252  DEWPERCIVFANTKHRCEEIWGYL------AADGHRVGLLTG--------DVAQKKRLSL  297

Query  424  IQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSV--YA  480
            +++F DG L++LVAT VA  GL I     V  Y L  +    V   GR  RA +S    +
Sbjct  298  LKQFTDGDLDILVATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSIS  357

Query  481  FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRA  534
            F   E +  L       A+E  +  ++   Q   +A     + +L +    KRA
Sbjct  358  FACEEYAMNLP------AIEEYIGHSIPVSQYETEA-----LLELPKPYRLKRA  400


 Score = 41.3 bits (95),  Expect = 0.029, Method: Composition-based stats.
 Identities = 20/120 (17%), Positives = 36/120 (30%), Gaps = 16/120 (13%)

Query  26   TGAGKTRAAAYVAKRHLET-------VDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTVT  78
            TG GKT A       HL T           + ++L     L  Q         D  +   
Sbjct  55   TGTGKTMAFLTATFHHLLTHQDPNLEYPHPRALILAPTRELAVQ------ISNDAEFLAK  108

Query  79   TLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECHH  135
                      G     +   ++ C  ++L      +    ++  + L    ++V+DE   
Sbjct  109  ASGLKTALAYGGDGYDKQLQVIECGVDILIGTTGRVIDYVKQGVIGLDEIQVVVLDEADR  168


>sp|A6TGG9|RHLB_KLEP7 ATP-dependent RNA helicase RhlB OS=Klebsiella 
pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 
78578) OX=272620 GN=rhlB PE=3 SV=1
Length=421

 Score = 152 bits (383),  Expect = 7e-39, Method: Composition-based stats.
 Identities = 70/359 (19%), Positives = 120/359 (33%), Gaps = 58/359 (16%)

Query  207  LQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVK  264
            L  H     +Q N        P  +L  ++        +    +L   +G   Y++Q+  
Sbjct  71   LLSHPAIADRQVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKV  130

Query  265  LSEAAALAGLQEQRVYALHLRRYN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQ  319
            L     +      R+     + +        +++ +  R  D L  ++D          +
Sbjct  131  LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----R  185

Query  320  ILCAERRLLALFDD----RKNELAHLATHGPENPKLE-------------------MLEK  356
            +  A +RL  LF      R  ELA    +  E  ++E                      +
Sbjct  186  MPPATQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMR  245

Query  357  ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT  416
            +LQ         R I+F  T+     +         L     R  LL G         + 
Sbjct  246  LLQTLLEEEWPDRAIVFANTKHRCEDIW------GHLAADGHRVGLLTG--------DVA  291

Query  417  QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARAD  475
            Q+ +  ++++F  G L++LVAT VA  GL IP    V  Y L  +    V   GR  RA 
Sbjct  292  QKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAG  351

Query  476  QSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRA  534
             S ++         L       A+ET +  ++   +        A + DL +     RA
Sbjct  352  ASGHSISLACEEYALN----LPAIETYIGHSIPVSKYNP----DALMTDLPKPLRLTRA  402


 Score = 43.6 bits (101),  Expect = 0.005, Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV  77
            TG GKT A       +L          V+  + +++     L  Q         D     
Sbjct  55   TGTGKTMAFLTSTFHYLLSHPAIADRQVNQPRALIMAPTRELAVQ------IHADAEPLA  108

Query  78   TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH  134
                  +G   G     +   +L    ++L      L    ++ H+ L    ++V+DE  
Sbjct  109  QATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD  168

Query  135  H  135
             
Sbjct  169  R  169


>sp|A5UDI1|RHLB_HAEIE ATP-dependent RNA helicase RhlB OS=Haemophilus 
influenzae (strain PittEE) OX=374930 GN=rhlB PE=3 SV=1
Length=415

 Score = 151 bits (381),  Expect = 1e-38, Method: Composition-based stats.
 Identities = 66/319 (21%), Positives = 115/319 (36%), Gaps = 61/319 (19%)

Query  247  PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN-----DALLIHDTVRAVD  301
             + +  +G   Y++Q+  +     +      RV     +          +++ +  R  D
Sbjct  112  LKTALAYGGDGYDKQLQAIERGVDILIGTTGRVIDYVKQGVIGLDEIQVVVLDEADRMFD  171

Query  302  ALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPEN----PKLEM  353
             L  ++D  +       +    + RL  LF      +  ELA    + PE     P+ + 
Sbjct  172  -LGFIRDIRY----LLRKCPTPQVRLTMLFSATLSYKVRELAFEDMNDPEYIEIEPEQKT  226

Query  354  LEKILQRQFSSSNSP---------------RGIIFTRTRQSAHSLLLWLQQQQGLQTVDI  398
              +I +  F  SN                 R I+F  T+     +  +L           
Sbjct  227  GHRIKEELFYPSNQDKMALLLTLMEDEWPERCIVFANTKHRCEEIWGYL------AADGH  280

Query  399  RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL  458
            R  LL G         + Q+ +  ++++F DG L++LVAT VA  GL I     V  Y L
Sbjct  281  RVGLLTG--------DVAQKKRLSLLKQFTDGDLDILVATDVAARGLHISDVTHVFNYDL  332

Query  459  LTNEISMVQARGR-ARADQSV--YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQ  515
              +    V   GR  RA +S    +F   E +  L       A+E  +  ++   Q   +
Sbjct  333  PDDREDYVHRIGRTGRAGESGVSISFACEEYAMNLP------AIEEYIGHSIPVSQYETE  386

Query  516  AEYQAKIRDLQQAALTKRA  534
            A     + +L +    KRA
Sbjct  387  A-----LLELPKPYRLKRA  400


 Score = 38.6 bits (88),  Expect = 0.20, Method: Composition-based stats.
 Identities = 27/119 (23%), Positives = 43/119 (36%), Gaps = 14/119 (12%)

Query  26   TGAGKTRAAAYVAKRHLET-------VDGAKVVVLVNRVHLVTQ--HGEEFRRMLDGRWT  76
            TG GKT A       HL T           + ++L +   L  Q  +  EF     G  T
Sbjct  55   TGTGKTMAFLTATFHHLLTHQDPNLEYPHPRALILASTRELAVQISNDAEFLAKACGLKT  114

Query  77   VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH  135
                 GD   +     + R  D+LI T   +   +    ++  + L    ++V+DE   
Sbjct  115  ALAYGGDGYDKQL-QAIERGVDILIGTTGRVIDYV----KQGVIGLDEIQVVVLDEADR  168


>sp|A7TKR8|DED1_VANPO ATP-dependent RNA helicase DED1 OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=DED1 PE=3 SV=1
Length=650

 Score = 154 bits (390),  Expect = 2e-38, Method: Composition-based stats.
 Identities = 76/356 (21%), Positives = 127/356 (36%), Gaps = 57/356 (16%)

Query  228  PFGDLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR  285
            P  +L  ++ D+         +     +G      Q+  LS    L      R+  L  R
Sbjct  251  PTRELATQIYDEAKKFTYRSWVRPTVVYGGSDIGSQIRDLSRGCDLLVATPGRLSDLLER  310

Query  286  -----RYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH  340
                      L++ +  R +D     +    +           ER+ L       +++ H
Sbjct  311  GRVSLANVKYLVLDEADRMLDM--GFEPQIRQIVDGCDMPPVGERQTLMFSATFPDDIQH  368

Query  341  LATH---------------GPENPKLEML-------EKILQRQFSSSNSPRGIIFTRTRQ  378
            LA                   EN    +L       +  L    S+SN    +IF  T++
Sbjct  369  LARDFLSDYIFLSVGKVGSTSENITQRILYVEDMDKKSTLLDLLSASNDGLTLIFVETKR  428

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT  438
             A  L  +L  Q      D RA  + G          TQ +++  +  F++G  NLLVAT
Sbjct  429  MADELTDFLIMQ------DFRATAIHG--------DRTQSERERALAAFKNGNANLLVAT  474

Query  439  SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKR---E  493
            +VA  GLDIP+   VV Y L ++    V   GR  RA  +  A      G+R + +   E
Sbjct  475  AVAARGLDIPNVTHVVNYDLPSDIDDYVHRIGRTGRAGNTGVATAFFNRGNRNIVKGMYE  534

Query  494  LINEALETL-------MEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQREN  542
            L+ EA + +       M ++    +    +      RD +++      +    R N
Sbjct  535  LLAEANQEIPPFLNDVMRESGRGGRTSGFSSRNNSNRDYRRSGSNNGGSWGNSRSN  590


 Score = 49.0 bits (115),  Expect = 1e-04, Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 47/138 (34%), Gaps = 23/138 (17%)

Query  16   EGKNIIIWLPTGAGKT--RAAAYVAKRHLETVDG-----------AK----VVVLVNRVH  58
             G++++    TG+GKT       V     +                K     +VL     
Sbjct  196  RGRDLMACAQTGSGKTGGFL-FPVLSESFKNGPSPMPESARKSFVKKAYPTALVLAPTRE  254

Query  59   LVTQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE  117
            L TQ  +E ++     W   T + G     +    L+R  DLL+ T   L   L    E 
Sbjct  255  LATQIYDEAKKFTYRSWVRPTVVYGGSDIGSQIRDLSRGCDLLVATPGRLSDLL----ER  310

Query  118  EHVELTVFSLIVVDECHH  135
              V L     +V+DE   
Sbjct  311  GRVSLANVKYLVLDEADR  328


>sp|Q12S35|RHLB_SHEDO ATP-dependent RNA helicase RhlB OS=Shewanella 
denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) 
OX=318161 GN=rhlB PE=3 SV=1
Length=432

 Score = 151 bits (380),  Expect = 2e-38, Method: Composition-based stats.
 Identities = 64/316 (20%), Positives = 115/316 (36%), Gaps = 56/316 (18%)

Query  253  FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR-----RYNDALLIHDTVRAVDALAALQ  307
            +G + YE Q   L +   +      R+     +         A+++ +  R  D L  ++
Sbjct  119  YGGESYEVQREVLDKGVDILIGTTGRIIDYVRQGVISLNSIQAVVLDEADRMFD-LGFIK  177

Query  308  DFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPE----NPKLEMLEKILQ  359
            D          ++  A  RL  LF      +  ELA+   + PE     P+ +  + I +
Sbjct  178  DIRFLFR----RMPDASSRLNMLFSATLSMKVQELAYDHMNDPEKVEVTPEEKTSKNIKE  233

Query  360  RQFSSSNSPR---------------GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI  404
              F  S   +                I+F+ T+ S  +L  WL      +    R  LL 
Sbjct  234  EIFYPSTEDKMRLLLTLMEEDWPEKAIVFSNTKHSCENLWSWL------EGDGHRVGLLT  287

Query  405  GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
            G         + Q+ +  ++++F  G L++LVAT VA  GL I   + V  Y L  +   
Sbjct  288  G--------DVPQKKRIRILEQFTSGDLDVLVATDVAARGLHISDVSHVYNYDLPDDCED  339

Query  465  MVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIR  523
             V   GR  RA     +      +  L       A+E  +  +V     + + + +A + 
Sbjct  340  YVHRIGRTGRAGNKGVSVSFACETYALN----LPAIEQYIGHSVP----VSRYDREALLD  391

Query  524  DLQQAALTKRAAQAAQ  539
            D+       R    ++
Sbjct  392  DIPTPVKIHRKHPTSR  407


 Score = 46.7 bits (109),  Expect = 5e-04, Method: Composition-based stats.
 Identities = 35/225 (16%), Positives = 67/225 (30%), Gaps = 23/225 (10%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQ---H  63
            L+ K+I     TG GKT A       HL          ++  + +++     L  Q    
Sbjct  44   LKAKDIAGQAQTGTGKTMAFLVATFNHLLTTPAPQARELNQPRAIIMAPTRELAIQIAKD  103

Query  64   GEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELT  123
                 +    +  V  + G          L +  D+LI T   +   +     +  + L 
Sbjct  104  ANLLAKHTGLK--VGIVYGGESYEVQREVLDKGVDILIGTTGRIIDYV----RQGVISLN  157

Query  124  VFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAIN  183
                +V+DE      D  +   +          +  L  +   T S         + A +
Sbjct  158  SIQAVVLDEADR-MFDLGFIKDIRFLFRRMPDASSRLNMLFSATLS-----MKVQELAYD  211

Query  184  HVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
            H+        T    + +N   ++   S +   +  L       P
Sbjct  212  HMNDPEKVEVTPEEKTSKNIKEEIFYPSTEDKMRLLLTLMEEDWP  256


>sp|Q4I7K4|DED1_GIBZE ATP-dependent RNA helicase DED1 OS=Gibberella 
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / 
NRRL 31084 / PH-1) OX=229533 GN=DED1 PE=3 SV=1
Length=675

 Score = 153 bits (386),  Expect = 8e-38, Method: Composition-based stats.
 Identities = 67/308 (22%), Positives = 113/308 (37%), Gaps = 47/308 (15%)

Query  228  PFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR  285
            P  +L+ ++ D+         +     +G      Q+ ++     L      R+  L  R
Sbjct  279  PTRELVSQIFDESRKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIER  338

Query  286  -----RYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH  340
                 +    L++ +  R +D     +    R    +      +R+ L        ++  
Sbjct  339  GRISLQNIKYLVLDEADRMLDM--GFEPQIRRIVEGEDMPQVQDRQTLMFSATFPRDIQM  396

Query  341  LA-----------------THGPENPKLEMLEKI-----LQRQFSSSNSPRGIIFTRTRQ  378
            LA                 T      K+E +E +     L     S  +   +IF  T++
Sbjct  397  LARDFLKDYIFLSVGRVGSTSENITQKVEYVEDVDKRSVLLDILHSHANGLTLIFVETKR  456

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT  438
             A SL  +L  Q    T              S     TQR+++  ++ F++G   +LVAT
Sbjct  457  MADSLSDFLINQNFPAT--------------SIHGDRTQRERERALEFFRNGRCPILVAT  502

Query  439  SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELIN  496
            +VA  GLDIPH   V+ Y L T+    V   GR  RA  +  A      G+R + REL++
Sbjct  503  AVAARGLDIPHVTHVINYDLPTDVDDYVHRIGRTGRAGNTGIATAFFNRGNRGIVRELMD  562

Query  497  EALETLME  504
               E   E
Sbjct  563  LLKEANQE  570


 Score = 50.2 bits (118),  Expect = 5e-05, Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 48/138 (35%), Gaps = 23/138 (17%)

Query  17   GKNIIIWLPTGAGKT-----------RA---AAYVAKRHLETVDGAKV----VVLVNRVH  58
            G++++    TG+GKT                +A  A    +     K     ++L     
Sbjct  223  GRDLMACAQTGSGKTGGFLFPILSQAFINGPSAVPANAAGQFGRQRKAYPTSLILAPTRE  282

Query  59   LVTQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE  117
            LV+Q  +E R+     W     + G     +    + R  DLL+ T   L   +    E 
Sbjct  283  LVSQIFDESRKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLI----ER  338

Query  118  EHVELTVFSLIVVDECHH  135
              + L     +V+DE   
Sbjct  339  GRISLQNIKYLVLDEADR  356


>sp|A1SAL1|RHLB_SHEAM ATP-dependent RNA helicase RhlB OS=Shewanella 
amazonensis (strain ATCC BAA-1098 / SB2B) OX=326297 GN=rhlB 
PE=3 SV=1
Length=439

 Score = 149 bits (375),  Expect = 1e-37, Method: Composition-based stats.
 Identities = 63/329 (19%), Positives = 114/329 (35%), Gaps = 61/329 (19%)

Query  253  FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN-----DALLIHDTVRAVDALAALQ  307
            +G + YE Q   L +   +      R+     +         A+++ +  R  D L  ++
Sbjct  119  YGGEGYEAQRKVLDKGVDVLIGTTGRIIDYVRQGVINLGAIQAVVLDEADRMFD-LGFIK  177

Query  308  DFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPE----------------  347
            D     +    ++  A+ RL  LF      +  ELA+   + P                 
Sbjct  178  DIRFLFN----RMPGAKERLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSRNIKE  233

Query  348  ---NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI  404
                P +E   K+L          + I+F  T+    +L         L+    R  LL 
Sbjct  234  EIFYPSMEDKLKLLHSLIEEDWPEKAIVFANTKYQCENLW------ASLEADGHRVGLLT  287

Query  405  GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
            G         + Q+ + +++++F    L++LVAT VA  GL I   + V  Y L  +   
Sbjct  288  G--------DVPQKKRLKILEQFTQSELDILVATDVAARGLHISDVSHVYNYDLPDDCED  339

Query  465  MVQARGR-ARADQSV--YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK  521
             V   GR  RA Q     +F   E +  L       A+E  ++ ++        +  +  
Sbjct  340  YVHRIGRTGRAGQKGVSVSFACEEYALNLP------AIEDYIKHSIPVT-----SYDRDA  388

Query  522  IRDLQQAALTKRAAQAAQRENQRQQFPVE  550
            + D+       R   A  R  + +     
Sbjct  389  LIDIPPPVKIHRKPHAGGRNLRDRNGSPR  417


 Score = 45.6 bits (106),  Expect = 0.001, Method: Composition-based stats.
 Identities = 24/121 (20%), Positives = 42/121 (35%), Gaps = 17/121 (14%)

Query  26   TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEE---FRRMLDGR  74
            TG GKT A       HL          ++  + +V+     L  Q  ++     +    +
Sbjct  55   TGTGKTLAFLVATFNHLLTTPVPEHRQLNQPRAIVMAPTRELAIQIAKDATLLSKHSGLK  114

Query  75   WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECH  134
              V  + G  G  A    L +  D+LI T   +   +     +  + L     +V+DE  
Sbjct  115  --VGIVYGGEGYEAQRKVLDKGVDVLIGTTGRIIDYV----RQGVINLGAIQAVVLDEAD  168

Query  135  H  135
             
Sbjct  169  R  169


>sp|A7EJY3|DED1_SCLS1 ATP-dependent RNA helicase ded1 OS=Sclerotinia 
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 
GN=ded1 PE=3 SV=1
Length=678

 Score = 152 bits (384),  Expect = 2e-37, Method: Composition-based stats.
 Identities = 66/309 (21%), Positives = 111/309 (36%), Gaps = 49/309 (16%)

Query  228  PFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR  285
            P  +L+ ++ D+         +     +G      Q+ ++     L      R+  L  R
Sbjct  279  PTRELVSQIFDESRKFAYRSWVRPCVVYGGADIGSQLRQMERGCDLLVATPGRLVDLIER  338

Query  286  -----RYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH  340
                 +    L++ +  R +D     Q    R  V    +   + R   +F         
Sbjct  339  GRISLQNIKYLVLDEADRMLDMGFEPQ---IRRIVEGEDMPGVQNRQTLMFSATFPRDIQ  395

Query  341  L------------------ATHGPENPKLEMLEKI-----LQRQFSSSNSPRGIIFTRTR  377
            +                  +T      K+E +E I     L     +  +   +IF  T+
Sbjct  396  MLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDIDKRSVLLDILHTHGAGLTLIFVETK  455

Query  378  QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA  437
            + A SL  +L  Q    T              S     TQR+++  ++ F++G   +LVA
Sbjct  456  RMADSLSDFLINQNFPAT--------------SIHGDRTQRERERALEMFRNGRCPILVA  501

Query  438  TSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELI  495
            T+VA  GLDIP+   VV Y L T+    V   GR  RA  +  +      G+R + R+LI
Sbjct  502  TAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGISTAFFNRGNRGVVRDLI  561

Query  496  NEALETLME  504
                E   E
Sbjct  562  ELLKEANQE  570


 Score = 48.3 bits (113),  Expect = 2e-04, Method: Composition-based stats.
 Identities = 25/140 (18%), Positives = 47/140 (34%), Gaps = 23/140 (16%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKV------------------VVLVNR  56
            + G++++    TG+GKT    +           + +                  ++L   
Sbjct  221  MGGRDLMACAQTGSGKTGGFLFPILSQAFQTGPSPIPANAAGSFGRTRKAYPTSLILAPT  280

Query  57   VHLVTQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE  115
              LV+Q  +E R+     W     + G     +    + R  DLL+ T   L   +    
Sbjct  281  RELVSQIFDESRKFAYRSWVRPCVVYGGADIGSQLRQMERGCDLLVATPGRLVDLI----  336

Query  116  EEEHVELTVFSLIVVDECHH  135
            E   + L     +V+DE   
Sbjct  337  ERGRISLQNIKYLVLDEADR  356


>sp|A1CXK7|DED1_NEOFI ATP-dependent RNA helicase ded1 OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / 
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=ded1 
PE=3 SV=1
Length=676

 Score = 152 bits (384),  Expect = 2e-37, Method: Composition-based stats.
 Identities = 66/309 (21%), Positives = 112/309 (36%), Gaps = 48/309 (16%)

Query  228  PFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR  285
            P  +L+ ++ D+         +     +G      Q+ ++     L      R+  L  R
Sbjct  285  PTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIER  344

Query  286  R-----YNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH  340
                      L++ +  R +D     +    R    +      ER+ L        ++  
Sbjct  345  GRISLVNIKYLVLDEADRMLDM--GFEPQIRRIVEGEDMPNVNERQTLMFSATFPRDIQM  402

Query  341  LA-----------------THGPENPKLEMLEK------ILQRQFSSSNSPRGIIFTRTR  377
            LA                 T      K+E +E       +L    +   S   +IF  T+
Sbjct  403  LARDFLKDYVFLSVGRVGSTSENITQKVEYVEDHDKRSVLLDILHTHGTSGLTLIFVETK  462

Query  378  QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA  437
            + A +L  +L  Q+   T              +     TQR+++  ++ F+ G   +LVA
Sbjct  463  RMADALSDFLLNQRFPAT--------------AIHGDRTQRERERALEMFRSGRCPILVA  508

Query  438  TSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELI  495
            T+VA  GLDIP+   V+ Y L T+    V   GR  RA  +  A      G+R + RELI
Sbjct  509  TAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVRELI  568

Query  496  NEALETLME  504
            +   E   E
Sbjct  569  DLLKEAHQE  577


 Score = 47.5 bits (111),  Expect = 4e-04, Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 47/142 (33%), Gaps = 25/142 (18%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKV--------------------VVLV  54
            + G++++    TG+GKT    +           + V                    ++L 
Sbjct  225  MNGRDLMACAQTGSGKTGGFLFPILSQAFQTGPSAVPAQASGQFGYGRQRKAYPTSLILA  284

Query  55   NRVHLVTQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTS  113
                LV+Q  +E R+     W     + G     +    + R  DLL+ T   L   +  
Sbjct  285  PTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLI--  342

Query  114  PEEEEHVELTVFSLIVVDECHH  135
              E   + L     +V+DE   
Sbjct  343  --ERGRISLVNIKYLVLDEADR  362


>sp|Q6CLR3|DED1_KLULA ATP-dependent RNA helicase DED1 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 
1267 / NRRL Y-1140 / WM37) OX=284590 GN=DED1 PE=3 SV=1
Length=627

 Score = 151 bits (381),  Expect = 2e-37, Method: Composition-based stats.
 Identities = 63/308 (20%), Positives = 113/308 (37%), Gaps = 47/308 (15%)

Query  228  PFGDLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR  285
            P  +L  ++ D+         +     +G    + Q+ ++     L      R+  L  R
Sbjct  250  PTRELATQIYDEAKKFTYRSWVKPMVVYGGASIDNQIKQMRYGCNLLVATPGRLTDLLER  309

Query  286  RY-----NDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH  340
            RY        L++ +  R +D     +    R            R+ L       +E+ H
Sbjct  310  RYISLANVKYLVLDEADRMLDM--GFEPQIRRIVEGSDMPSVDNRQTLMFSATFPSEIQH  367

Query  341  LA-----------------THGPENPKLEMLEKI-----LQRQFSSSNSPRGIIFTRTRQ  378
            LA                 T      K+  +E       L    ++SN    +IF  T++
Sbjct  368  LASDFLKDYVFLSVGRVGSTSENITQKILYVEDFDKNDTLLDLLAASNEGLTLIFVETKR  427

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT  438
            +A SL  +L              ++ G   ++     TQ +++  +  F+ G   +LVAT
Sbjct  428  AADSLTDFL--------------IMEGFKATAIHGDRTQGERERALSAFKTGRATILVAT  473

Query  439  SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYA-FVATEGSRELKRELIN  496
            +VA  GLDIP+   V+ + L  +    V   GR  RA  +  A      G++ + +EL++
Sbjct  474  AVAARGLDIPNVTHVINFDLPNDIDDYVHRIGRTGRAGNTGVATTFFNRGNKNVAKELVS  533

Query  497  EALETLME  504
               E   E
Sbjct  534  LLSEANQE  541


 Score = 46.7 bits (109),  Expect = 6e-04, Method: Composition-based stats.
 Identities = 27/151 (18%), Positives = 51/151 (34%), Gaps = 24/151 (16%)

Query  2    ELRSYQWEVIMPALEGKNIIIWLPTGAGKT--RAAAYVAKRHLE----------TVDGAK  49
             ++ Y   ++     G++++    TG+GKT       +++                   K
Sbjct  184  PVQKYSVPIVAA---GRDLMACAQTGSGKTGGFLFPVLSESFSSGPASTPEAAGNSYIKK  240

Query  50   V----VVLVNRVHLVTQHGEEFRRMLDGRWTVTT-LSGDMGPRAGFGHLARCHDLLICTA  104
            V    V+L     L TQ  +E ++     W     + G          +    +LL+ T 
Sbjct  241  VYPTAVILAPTRELATQIYDEAKKFTYRSWVKPMVVYGGASIDNQIKQMRYGCNLLVATP  300

Query  105  ELLQMALTSPEEEEHVELTVFSLIVVDECHH  135
              L   L    E  ++ L     +V+DE   
Sbjct  301  GRLTDLL----ERRYISLANVKYLVLDEADR  327


>sp|Q2HBE7|DED1_CHAGB ATP-dependent RNA helicase DED1 OS=Chaetomium 
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 
6347 / NRRL 1970) OX=306901 GN=DED1 PE=3 SV=1
Length=688

 Score = 151 bits (382),  Expect = 3e-37, Method: Composition-based stats.
 Identities = 63/281 (22%), Positives = 102/281 (36%), Gaps = 45/281 (16%)

Query  253  FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR-----RYNDALLIHDTVRAVDALAALQ  307
            +G      Q+ ++     L      R+  L  R          L++ +  R +D     +
Sbjct  317  YGGADIGSQLRQMERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDM--GFE  374

Query  308  DFYHREHVTKTQILCAERRLLAL---FDDRKNELAHL--------------ATHGPENPK  350
                R    +      +R+ L     F      LA                +T      K
Sbjct  375  PQIRRIVQGEDMPTTGQRQTLMFSATFPRDIQMLAQDFLNDYVFLSVGRVGSTSENITQK  434

Query  351  LEMLEKI-----LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
            +E +E +     L     +      +IF  T++ A SL  +L  Q    T          
Sbjct  435  VEYVEDVDKRSVLLDILHTHAGGLTLIFVETKRMADSLSDFLINQNFPAT----------  484

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM  465
                S     TQR+++  ++ F++G   +LVAT+VA  GLDIP+   V+ Y L T+    
Sbjct  485  ----SIHGDRTQRERERALELFRNGKCPILVATAVAARGLDIPNVTHVINYDLPTDVDDY  540

Query  466  VQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLME  504
            V   GR  RA  +  A      G+R + REL++   E   E
Sbjct  541  VHRIGRTGRAGNTGIATAFFNRGNRGIVRELLDLLKEANQE  581


 Score = 51.0 bits (120),  Expect = 4e-05, Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 54/159 (34%), Gaps = 28/159 (18%)

Query  1    MELRSYQW------EVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKV----  50
            +EL  YQ         I   + G++++    TG+GKT    +       T   + +    
Sbjct  213  IELARYQIPTPVQKYSIPIVINGRDLMACAQTGSGKTGGFLFPIMHQSFTQGPSPIPAQS  272

Query  51   -------------VVLVNRVHLVTQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARC  96
                         ++L     LV+Q  EE R+     W     + G     +    + R 
Sbjct  273  GGGYRQRKAYPTALILAPTRELVSQIYEEARKFAYRSWVRPCVVYGGADIGSQLRQMERG  332

Query  97   HDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH  135
             DLL+ T   L   +    E   + L     +V+DE   
Sbjct  333  CDLLVATPGRLVDLI----ERGRISLCNIKYLVLDEADR  367


>sp|Q0UWA6|DED1_PHANO ATP-dependent RNA helicase DED1 OS=Phaeosphaeria 
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) 
OX=321614 GN=DED1 PE=3 SV=1
Length=696

 Score = 151 bits (382),  Expect = 3e-37, Method: Composition-based stats.
 Identities = 67/308 (22%), Positives = 113/308 (37%), Gaps = 47/308 (15%)

Query  228  PFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR  285
            P  +L+ ++ D+         +     +G      Q+ ++     L      R+  L  R
Sbjct  294  PTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIER  353

Query  286  -----RYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCA-----------ERRLLA  329
                      L++ +  R +D     +    R    +     A            R +  
Sbjct  354  GRISLASIKYLVLDEADRMLDM--GFEPQIRRIVEGEDMPPTAGRQTLMFSATFPRDIQM  411

Query  330  LFDDRKNELAHLA------THGPENPKLEMLEK-----ILQRQFSSSNSPRGIIFTRTRQ  378
            L  D   E   L+      T      K+E +E      +L     +  +   +IF  T++
Sbjct  412  LARDFLKEYIFLSVGRVGSTSENITQKIEYVEDADKRSVLLDILHTHGAGLSLIFVETKR  471

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT  438
             A SL  +L  Q              G   +S     TQR++++ ++ F+ G   +LVAT
Sbjct  472  MADSLSDFLINQ--------------GFPATSIHGDRTQREREKALEMFRSGRCPILVAT  517

Query  439  SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELIN  496
            +VA  GLDIP+   VV Y L T+    V   GR  RA  +  A      G+R + R+L++
Sbjct  518  AVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVRDLLD  577

Query  497  EALETLME  504
               E   E
Sbjct  578  LLKEANQE  585


 Score = 48.6 bits (114),  Expect = 2e-04, Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 48/140 (34%), Gaps = 23/140 (16%)

Query  15   LEGKNIIIWLPTGAGKT-----RAAAYVAKRHLETVDGAKV-------------VVLVNR  56
            + G++++    TG+GKT        A   +        A+              ++L   
Sbjct  236  MGGRDLMACAQTGSGKTGGFLFPILAQAFQNGPSPPPTAQAGGYGRQRKAYPTSLILAPT  295

Query  57   VHLVTQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE  115
              LV+Q  +E R+     W     + G     +    + R  DLL+ T   L   +    
Sbjct  296  RELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLI----  351

Query  116  EEEHVELTVFSLIVVDECHH  135
            E   + L     +V+DE   
Sbjct  352  ERGRISLASIKYLVLDEADR  371


>sp|Q9P6U9|DED1_NEUCR ATP-dependent RNA helicase ded1 OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / 
DSM 1257 / FGSC 987) OX=367110 GN=drh-9 PE=3 SV=1
Length=688

 Score = 151 bits (380),  Expect = 5e-37, Method: Composition-based stats.
 Identities = 66/308 (21%), Positives = 110/308 (36%), Gaps = 47/308 (15%)

Query  228  PFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR  285
            P  +L+ ++ D+         +     +G      Q+ ++     L      R+  L  R
Sbjct  287  PTRELVSQIYDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIER  346

Query  286  -----RYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH  340
                      L++ +  R +D     +    R    +      +R+ L        ++  
Sbjct  347  GRISLCNIKYLVLDEADRMLDM--GFEPQIRRIVEGEDMPKVNDRQTLMFSATFPRDIQI  404

Query  341  LA-----------------THGPENPKLEMLEKI-----LQRQFSSSNSPRGIIFTRTRQ  378
            LA                 T      K+E +E I     L     +      +IF  T++
Sbjct  405  LARDFLKDYIFLSVGRVGSTSENITQKVEYVEDIDKRSVLLDILHTHAGGLTLIFVETKR  464

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT  438
             A SL  +L  Q    T              S     TQR+++  ++ F++G   +LVAT
Sbjct  465  MADSLSDFLINQNFPAT--------------SIHGDRTQRERERALEMFRNGRCPILVAT  510

Query  439  SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELIN  496
            +VA  GLDIP+   V+ Y L T+    V   GR  RA  +  A      G+R + REL+ 
Sbjct  511  AVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVRELLE  570

Query  497  EALETLME  504
               E   E
Sbjct  571  LLKEANQE  578


 Score = 47.9 bits (112),  Expect = 3e-04, Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 47/140 (34%), Gaps = 23/140 (16%)

Query  15   LEGKNIIIWLPTGAGKT-----------------RAAAYVAKRHLETVDG-AKVVVLVNR  56
            + G++++    TG+GKT                    A  A  +          ++L   
Sbjct  229  MGGRDLMACAQTGSGKTGGFLFPILSQSFHTGPSPIPASAAGAYGRQRKAYPTALILAPT  288

Query  57   VHLVTQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE  115
              LV+Q  +E R+     W     + G     +    + R  DLL+ T   L   +    
Sbjct  289  RELVSQIYDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLI----  344

Query  116  EEEHVELTVFSLIVVDECHH  135
            E   + L     +V+DE   
Sbjct  345  ERGRISLCNIKYLVLDEADR  364


>sp|Q4WP13|DED1_ASPFU ATP-dependent RNA helicase ded1 OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 
/ Af293) OX=330879 GN=ded1 PE=3 SV=1
Length=674

 Score = 151 bits (380),  Expect = 5e-37, Method: Composition-based stats.
 Identities = 65/309 (21%), Positives = 111/309 (36%), Gaps = 48/309 (16%)

Query  228  PFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR  285
            P  +L+ ++ D+         +     +G      Q+ ++     L      R+  L  R
Sbjct  283  PTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIER  342

Query  286  R-----YNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH  340
                      L++ +  R +D     +    R    +      ER+ L        ++  
Sbjct  343  GRISLVNIKYLVLDEADRMLDM--GFEPQIRRIVEGEDMPNVNERQTLMFSATFPRDIQM  400

Query  341  LA-----------------THGPENPKLEMLEK------ILQRQFSSSNSPRGIIFTRTR  377
            LA                 T      K+E +E       +L    +   S   +IF  T+
Sbjct  401  LARDFLKDYVFLSVGRVGSTSENITQKVEYVEDHDKRSVLLDILHTHGTSGLTLIFVETK  460

Query  378  QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA  437
            + A +L  +L  Q+   T              +     TQR+++  ++ F+ G   +LVA
Sbjct  461  RMADALSDFLLNQRFPAT--------------AIHGDRTQRERERALEMFRSGRCPILVA  506

Query  438  TSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELI  495
            T+VA  GLDIP+   V+ Y L T+    V   GR  RA  +  A       +R + RELI
Sbjct  507  TAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRSNRGVVRELI  566

Query  496  NEALETLME  504
            +   E   E
Sbjct  567  DLLKEAHQE  575


 Score = 47.5 bits (111),  Expect = 4e-04, Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 47/142 (33%), Gaps = 25/142 (18%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKV--------------------VVLV  54
            + G++++    TG+GKT    +           + V                    ++L 
Sbjct  223  MNGRDLMACAQTGSGKTGGFLFPILSQAFQTGPSPVPAQASGQFGYGRQRKAYPTSLILA  282

Query  55   NRVHLVTQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTS  113
                LV+Q  +E R+     W     + G     +    + R  DLL+ T   L   +  
Sbjct  283  PTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLI--  340

Query  114  PEEEEHVELTVFSLIVVDECHH  135
              E   + L     +V+DE   
Sbjct  341  --ERGRISLVNIKYLVLDEADR  360


>sp|Q2UGK3|DED1_ASPOR ATP-dependent RNA helicase ded1 OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=ded1 
PE=3 SV=1
Length=675

 Score = 151 bits (380),  Expect = 5e-37, Method: Composition-based stats.
 Identities = 65/309 (21%), Positives = 112/309 (36%), Gaps = 48/309 (16%)

Query  228  PFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR  285
            P  +L+ ++ D+         +     +G      Q+ ++     L      R+  L  R
Sbjct  281  PTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIER  340

Query  286  R-----YNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH  340
                      L++ +  R +D     +    R    +      +R+ L        ++  
Sbjct  341  GRISLVNIKYLILDEADRMLDM--GFEPQIRRIVEGEDMPHVNDRQTLMFSATFPRDIQM  398

Query  341  LA-----------------THGPENPKLEMLEK------ILQRQFSSSNSPRGIIFTRTR  377
            LA                 T      K+E +E       +L    +   S   +IF  T+
Sbjct  399  LARDFLKDYVFLSVGRVGSTSENITQKVEYVEDHDKRSVLLDILHTHGTSGLTLIFVETK  458

Query  378  QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA  437
            + A SL  +L  Q+   T              +     TQR+++  ++ F+ G   +LVA
Sbjct  459  RMADSLSDFLLNQRFPAT--------------AIHGDRTQRERERALEMFRSGRCPILVA  504

Query  438  TSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELI  495
            T+VA  GLDIP+   V+ Y L T+    V   GR  RA  +  A      G+R + R+LI
Sbjct  505  TAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVRDLI  564

Query  496  NEALETLME  504
            +   E   E
Sbjct  565  DLLKEAHQE  573


 Score = 48.6 bits (114),  Expect = 2e-04, Method: Composition-based stats.
 Identities = 25/142 (18%), Positives = 48/142 (34%), Gaps = 25/142 (18%)

Query  15   LEGKNIIIWLPTGAGKT--RAAAYVAKRH--------------LETVDGAKV----VVLV  54
            + G++++    TG+GKT       +++                       K     ++L 
Sbjct  221  MNGRDLMACAQTGSGKTGGFLFPILSQAFQNGPSPTPAPASGQFSYGRQRKAYPTSLILA  280

Query  55   NRVHLVTQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTS  113
                LV+Q  +E R+     W     + G     +    + R  DLL+ T   L   +  
Sbjct  281  PTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLI--  338

Query  114  PEEEEHVELTVFSLIVVDECHH  135
              E   + L     +++DE   
Sbjct  339  --ERGRISLVNIKYLILDEADR  358


>sp|A2QI25|DED1_ASPNC ATP-dependent RNA helicase ded1 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=ded1 PE=3 SV=1
Length=678

 Score = 151 bits (380),  Expect = 5e-37, Method: Composition-based stats.
 Identities = 65/309 (21%), Positives = 112/309 (36%), Gaps = 48/309 (16%)

Query  228  PFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR  285
            P  +L+ ++ D+         +     +G      Q+ ++     L      R+  L  R
Sbjct  282  PTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIER  341

Query  286  R-----YNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH  340
                      L++ +  R +D     +    R    +      +R+ L        ++  
Sbjct  342  GRISLVNIKYLILDEADRMLDM--GFEPQIRRIVEGEDMPHVNDRQTLMFSATFPRDIQM  399

Query  341  LA-----------------THGPENPKLEMLEK------ILQRQFSSSNSPRGIIFTRTR  377
            LA                 T      K+E +E       +L    +   S   +IF  T+
Sbjct  400  LARDFLKDYVFLSVGRVGSTSENITQKVEYVEDHDKRSVLLDILHTHGTSGLTLIFVETK  459

Query  378  QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA  437
            + A SL  +L  Q+   T              +     TQR+++  ++ F+ G   +LVA
Sbjct  460  RMADSLSDFLLNQRFPAT--------------AIHGDRTQRERERALEMFRSGRCPILVA  505

Query  438  TSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELI  495
            T+VA  GLDIP+   V+ Y L T+    V   GR  RA  +  A      G+R + R+LI
Sbjct  506  TAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVRDLI  565

Query  496  NEALETLME  504
            +   E   E
Sbjct  566  DLLKEAHQE  574


 Score = 47.9 bits (112),  Expect = 3e-04, Method: Composition-based stats.
 Identities = 25/142 (18%), Positives = 49/142 (35%), Gaps = 25/142 (18%)

Query  15   LEGKNIIIWLPTGAGKT--RAAAYVAKRH--------------LETVDGAKV----VVLV  54
            + G++++    TG+GKT       +++ +                     K     ++L 
Sbjct  222  MNGRDLMACAQTGSGKTGGFLFPILSQAYQNGPSAAPAQAGGQFGYGRQRKAYPTSLILA  281

Query  55   NRVHLVTQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTS  113
                LV+Q  +E R+     W     + G     +    + R  DLL+ T   L   +  
Sbjct  282  PTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLI--  339

Query  114  PEEEEHVELTVFSLIVVDECHH  135
              E   + L     +++DE   
Sbjct  340  --ERGRISLVNIKYLILDEADR  359


>sp|A6SEH9|DED1_BOTFB ATP-dependent RNA helicase ded1 OS=Botryotinia 
fuckeliana (strain B05.10) OX=332648 GN=ded1 PE=3 SV=1
Length=683

 Score = 150 bits (378),  Expect = 8e-37, Method: Composition-based stats.
 Identities = 66/309 (21%), Positives = 111/309 (36%), Gaps = 49/309 (16%)

Query  228  PFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR  285
            P  +L+ ++ D+         +     +G      Q+ ++     L      R+  L  R
Sbjct  279  PTRELVSQIYDESRKFAYRSWVRPCVVYGGADIGSQLRQMERGCDLLVATPGRLVDLIER  338

Query  286  -----RYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH  340
                 +    L++ +  R +D     Q    R  V    +   + R   +F         
Sbjct  339  GRISLQNIKYLVLDEADRMLDMGFEPQ---IRRIVEGEDMPGVQNRQTLMFSATFPRDIQ  395

Query  341  L------------------ATHGPENPKLEMLEKI-----LQRQFSSSNSPRGIIFTRTR  377
            +                  +T      K+E +E I     L     +  +   +IF  T+
Sbjct  396  MLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDIDKRSVLLDILHTHGAGLTLIFVETK  455

Query  378  QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA  437
            + A SL  +L  Q    T              S     TQR+++  ++ F++G   +LVA
Sbjct  456  RMADSLSDFLINQNFPAT--------------SIHGDRTQRERERALEMFRNGRCPILVA  501

Query  438  TSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELI  495
            T+VA  GLDIP+   VV Y L T+    V   GR  RA  +  +      G+R + R+LI
Sbjct  502  TAVAARGLDIPNVKHVVNYDLPTDIDDYVHRIGRTGRAGNTGISTAFFNRGNRGVCRDLI  561

Query  496  NEALETLME  504
                E   E
Sbjct  562  ELLKEANQE  570


 Score = 48.6 bits (114),  Expect = 2e-04, Method: Composition-based stats.
 Identities = 26/140 (19%), Positives = 47/140 (34%), Gaps = 23/140 (16%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKV------------------VVLVNR  56
            + G++++    TG+GKT    +           + V                  ++L   
Sbjct  221  MGGRDLMACAQTGSGKTGGFLFPILSQAFQTGPSPVPANAAGSFGRTRKAYPTSLILAPT  280

Query  57   VHLVTQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE  115
              LV+Q  +E R+     W     + G     +    + R  DLL+ T   L   +    
Sbjct  281  RELVSQIYDESRKFAYRSWVRPCVVYGGADIGSQLRQMERGCDLLVATPGRLVDLI----  336

Query  116  EEEHVELTVFSLIVVDECHH  135
            E   + L     +V+DE   
Sbjct  337  ERGRISLQNIKYLVLDEADR  356


>sp|C8V8H4|DED1_EMENI ATP-dependent RNA helicase ded1 OS=Emericella 
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 
194 / M139) OX=227321 GN=ded1 PE=3 SV=1
Length=668

 Score = 149 bits (377),  Expect = 1e-36, Method: Composition-based stats.
 Identities = 63/309 (20%), Positives = 112/309 (36%), Gaps = 48/309 (16%)

Query  228  PFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR  285
            P  +L+ ++ D+         +     +G      Q+ ++     L      R+  L  R
Sbjct  279  PTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIER  338

Query  286  R-----YNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH  340
                      L++ +  R +D     +    R    +      +R+ L        ++  
Sbjct  339  GRISLVNIKYLILDEADRMLDM--GFEPQIRRIVEGEDMPNVNDRQTLMFSATFPRDIQM  396

Query  341  LA-----------------THGPENPKLEMLEK------ILQRQFSSSNSPRGIIFTRTR  377
            LA                 T      K+E +E       +L    +   +   +IF  T+
Sbjct  397  LARDFLKDYVFLSVGRVGSTSENITQKVEYVEDHDKRSVLLDILHTHGTTGLTLIFVETK  456

Query  378  QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA  437
            + A +L  +L  Q+   T              +     TQR+++  ++ F+ G   +LVA
Sbjct  457  RMADALSEFLINQRFPAT--------------AIHGDRTQRERERALEMFRSGRYPILVA  502

Query  438  TSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELI  495
            T+VA  GLDIP+   V+ Y L T+    V   GR  RA  +  A      G+R + R+LI
Sbjct  503  TAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVRDLI  562

Query  496  NEALETLME  504
            +   E   E
Sbjct  563  DLLKEAHQE  571


 Score = 48.6 bits (114),  Expect = 2e-04, Method: Composition-based stats.
 Identities = 25/140 (18%), Positives = 50/140 (36%), Gaps = 23/140 (16%)

Query  15   LEGKNIIIWLPTGAGKT--RAAAYVAKRH------------LETVDGAKV----VVLVNR  56
            + G++++    TG+GKT       +++ +             +     K     ++L   
Sbjct  221  MNGRDLMACAQTGSGKTGGFLFPILSQAYQNGPAAPPPSAAGQFGRQRKAYPTSLILAPT  280

Query  57   VHLVTQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE  115
              LV+Q  +E R+     W     + G     +    + R  DLL+ T   L   +    
Sbjct  281  RELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLI----  336

Query  116  EEEHVELTVFSLIVVDECHH  135
            E   + L     +++DE   
Sbjct  337  ERGRISLVNIKYLILDEADR  356


>sp|P44922|RHLB_HAEIN ATP-dependent RNA helicase RhlB OS=Haemophilus 
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) 
OX=71421 GN=rhlB PE=3 SV=2
Length=415

 Score = 145 bits (365),  Expect = 2e-36, Method: Composition-based stats.
 Identities = 69/354 (19%), Positives = 125/354 (35%), Gaps = 63/354 (18%)

Query  214  PCKQYNLCHRRSQDPFGDLLKKLMD--QIHDHLEMPELSRKFGTQMYEQQVVKLSEAAAL  271
            P  +Y         P  +L  ++ +  +        + +  +G   Y++Q+  +     +
Sbjct  77   PNLKYPHPRALILAPTRELAVQISNDAEFLAKASGLKTALAYGGDGYDKQLQAIERGVDI  136

Query  272  AGLQEQRVYALHLRRYN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERR  326
                  RV     +          +++ +  R  D L  ++D  +       +    + R
Sbjct  137  LIGTTGRVIDYVKQGVIGLDEIQVVVLDEADRMFD-LGFIRDIRY----LLRKCPAPQAR  191

Query  327  LLALFDD----RKNELAHLATHGPENPKL----EMLEKILQRQFSSSNSP----------  368
            L  LF      +  ELA    + PE  ++    +   +I +  F  SN            
Sbjct  192  LTMLFSATLSYKVRELAFEDMNEPEYIEIEPEQKTGHRIKEELFYPSNQDKMALLLTLME  251

Query  369  -----RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEV  423
                 R I+F  T+     +  +L           R  LL G         + Q+ +  +
Sbjct  252  DEWPERCIVFANTKHRCEEIWGYL------AADGHRVGLLTG--------DVAQKKRLSL  297

Query  424  IQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSV--YA  480
            +++F DG L++LVAT VA  GL I     V  Y L  +    V   GR  RA +S    +
Sbjct  298  LKQFTDGDLDILVATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSIS  357

Query  481  FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRA  534
            F   E +  L       A+E  +  ++   Q   +A     + +L +    KRA
Sbjct  358  FACEEYAMNLP------AIEEYIGHSIPVSQYETEA-----LLELPKPYRLKRA  400


 Score = 43.6 bits (101),  Expect = 0.005, Method: Composition-based stats.
 Identities = 26/119 (22%), Positives = 41/119 (34%), Gaps = 14/119 (12%)

Query  26   TGAGKTRAAAYVAKRHL-------ETVDGAKVVVLVNRVHLVTQ--HGEEFRRMLDGRWT  76
            TG GKT A       HL             + ++L     L  Q  +  EF     G  T
Sbjct  55   TGTGKTMAFLTATFHHLLTHQDPNLKYPHPRALILAPTRELAVQISNDAEFLAKASGLKT  114

Query  77   VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH  135
                 GD   +     + R  D+LI T   +   +    ++  + L    ++V+DE   
Sbjct  115  ALAYGGDGYDKQL-QAIERGVDILIGTTGRVIDYV----KQGVIGLDEIQVVVLDEADR  168


>sp|A1CH78|DED1_ASPCL ATP-dependent RNA helicase ded1 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=ded1 PE=3 SV=1
Length=681

 Score = 149 bits (375),  Expect = 2e-36, Method: Composition-based stats.
 Identities = 65/309 (21%), Positives = 112/309 (36%), Gaps = 48/309 (16%)

Query  228  PFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR  285
            P  +L+ ++ D+         +     +G      Q+ ++     L      R+  L  R
Sbjct  284  PTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIER  343

Query  286  R-----YNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH  340
                    + L++ +  R +D     +    R    +      ER+ L        ++  
Sbjct  344  GRISLVNINYLVLDEADRMLDM--GFEPQIRRIVEGEDMPSVNERQTLMFSATFPRDIQM  401

Query  341  LA-----------------THGPENPKLEMLEK------ILQRQFSSSNSPRGIIFTRTR  377
            LA                 T      K+E +E       +L    +   S   +IF  T+
Sbjct  402  LARDFLKDYVFLSVGRVGSTSENITQKVEYVEDVDKRSVLLDILHTHGTSGLTLIFVETK  461

Query  378  QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA  437
            + A +L  +L  Q+   T              +     TQR+++  ++ F+     +LVA
Sbjct  462  RMADALSDFLINQRFPAT--------------AIHGDRTQRERERALEMFRSARCPILVA  507

Query  438  TSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELI  495
            T+VA  GLDIP+   V+ Y L T+    V   GR  RA  +  A      G+R + RELI
Sbjct  508  TAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVRELI  567

Query  496  NEALETLME  504
            +   E   E
Sbjct  568  DLLKEAHQE  576


 Score = 48.6 bits (114),  Expect = 2e-04, Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 50/142 (35%), Gaps = 25/142 (18%)

Query  15   LEGKNIIIWLPTGAGKT--RAAAYVAKRHLETV--------------DGAKV----VVLV  54
            + G++++    TG+GKT       +++   +                   K     ++L 
Sbjct  224  MNGRDLMACAQTGSGKTGGFLFPILSQAFQKGPSAVPAQASGQMSYGRQRKAYPTSLILA  283

Query  55   NRVHLVTQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTS  113
                LV+Q  +E R+     W     + G     +    + R  DLL+ T   L   +  
Sbjct  284  PTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLI--  341

Query  114  PEEEEHVELTVFSLIVVDECHH  135
              E   + L   + +V+DE   
Sbjct  342  --ERGRISLVNINYLVLDEADR  361


>sp|Q75B50|DED1_EREGS ATP-dependent RNA helicase DED1 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=DED1 PE=3 SV=2
Length=623

 Score = 148 bits (372),  Expect = 3e-36, Method: Composition-based stats.
 Identities = 64/348 (18%), Positives = 120/348 (34%), Gaps = 47/348 (14%)

Query  228  PFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR  285
            P  +L  ++ D+         +     +G     QQ+ +L     L      R+  L  R
Sbjct  236  PTRELATQIFDEAKKFTYRSWVKPCVVYGGADIRQQIRELERGCDLIVATPGRLNDLLER  295

Query  286  RY-----NDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH  340
                      L++ +  R +D     +                 R+ L        ++ H
Sbjct  296  GKISLCSVKYLVLDEADRMLDM--GFEPQIRHIVEGCDMPTVENRQTLMFSATFPTDIQH  353

Query  341  LA-----------------THGPENPKLEMLEKI-----LQRQFSSSNSPRGIIFTRTRQ  378
            LA                 T      K+  +E I     L    ++S+    ++F  T++
Sbjct  354  LAADFLKDYIFLSVGRVGSTSENITQKVLHVEDIDKRSVLLDLLAASDGGLTLVFVETKR  413

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT  438
             A +L  +L              ++     ++     TQ +++  +  F+ G  N+LVAT
Sbjct  414  MADALTDFL--------------IMQNLSATAIHGDRTQAERERALAFFRTGRANVLVAT  459

Query  439  SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELIN  496
            +VA  GLDIP+   V+ Y L ++    V   GR  RA  +  A      G++ + +EL++
Sbjct  460  AVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGLATAFFNRGNKNVVKELVD  519

Query  497  EALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQR  544
               E   E      Q   +  Y        +      +   + R+ +R
Sbjct  520  ILEEANQEVPSFLSQIAKEMSYGGGGGKSSRGGRGGYSRGNSTRDFRR  567


 Score = 49.0 bits (115),  Expect = 1e-04, Method: Composition-based stats.
 Identities = 28/136 (21%), Positives = 46/136 (34%), Gaps = 20/136 (15%)

Query  16   EGKNIIIWLPTGAGKT--RAAAYVAKRHLETVDGAK-------------VVVLVNRVHLV  60
            +G++++    TG+GKT       +++                        VVL     L 
Sbjct  182  KGRDLMACAQTGSGKTGGFLFPVLSQSFSNGPASTPDESGYYMRKAYPTAVVLAPTRELA  241

Query  61   TQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
            TQ  +E ++     W     + G    R     L R  DL++ T   L   L    E   
Sbjct  242  TQIFDEAKKFTYRSWVKPCVVYGGADIRQQIRELERGCDLIVATPGRLNDLL----ERGK  297

Query  120  VELTVFSLIVVDECHH  135
            + L     +V+DE   
Sbjct  298  ISLCSVKYLVLDEADR  313


>sp|Q1DJF0|DED1_COCIM ATP-dependent RNA helicase DED1 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=DED1 PE=3 SV=2
Length=665

 Score = 148 bits (373),  Expect = 3e-36, Method: Composition-based stats.
 Identities = 64/308 (21%), Positives = 110/308 (36%), Gaps = 47/308 (15%)

Query  228  PFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR  285
            P  +L+ ++ D+         +     +G      Q+ ++     L      R+  L  R
Sbjct  276  PTRELVSQIYDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIER  335

Query  286  -----RYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH  340
                      L++ +  R +D     +    R    +       R+ L        ++  
Sbjct  336  GRISLCNIKYLVLDEADRMLDM--GFEPQIRRIVEGEDMPPVNGRQTLMFSATFPRDIQM  393

Query  341  LA-----------------THGPENPKLEMLEK-----ILQRQFSSSNSPRGIIFTRTRQ  378
            LA                 T      K+E +E      +L     +  +   +IF  T++
Sbjct  394  LARDFLKDYVFLSVGRVGSTSENITQKVEYVEDADKRSVLLDILHTHGTGLTLIFVETKR  453

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT  438
             A SL  +L  Q    T              +     TQR+++  ++ F++G   +LVAT
Sbjct  454  MADSLSEFLINQNFPAT--------------AIHGDRTQRERERALEYFRNGRCPILVAT  499

Query  439  SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELIN  496
            +VA  GLDIP+   VV Y L T+    V   GR  RA  +  +      G+R + R+LI 
Sbjct  500  AVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGLSTAFFNRGNRGVVRDLIE  559

Query  497  EALETLME  504
               E   E
Sbjct  560  LLKEAHQE  567


 Score = 48.3 bits (113),  Expect = 2e-04, Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 48/142 (34%), Gaps = 25/142 (18%)

Query  15   LEGKNIIIWLPTGAGKT--RAAAYVAK--------------RHLETVDGAKV----VVLV  54
            + G++++    TG+GKT       +++                       K     ++L 
Sbjct  216  MGGRDLMACAQTGSGKTGGFLFPILSQAFKNGPSAVPTQNANQFSYGRQRKAYPTSLILA  275

Query  55   NRVHLVTQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTS  113
                LV+Q  +E R+     W     + G     +    + R  DLL+ T   L   +  
Sbjct  276  PTRELVSQIYDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLI--  333

Query  114  PEEEEHVELTVFSLIVVDECHH  135
              E   + L     +V+DE   
Sbjct  334  --ERGRISLCNIKYLVLDEADR  353


>sp|Q4P733|DED1_USTMA ATP-dependent RNA helicase DED1 OS=Ustilago 
maydis (strain 521 / FGSC 9021) OX=237631 GN=DED1 PE=3 SV=1
Length=672

 Score = 148 bits (372),  Expect = 5e-36, Method: Composition-based stats.
 Identities = 62/309 (20%), Positives = 111/309 (36%), Gaps = 48/309 (16%)

Query  228  PFGDLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR  285
            P  +L+ ++ D+         +     +G      Q+ ++     L      R+  L  R
Sbjct  283  PTRELVSQIHDEARKFTYRSWVKPAVVYGGADIVTQLRQIERGCDLLSATPGRLVDLMER  342

Query  286  -----RYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH  340
                      L++ +  R +D     +    R    +      +R+ L        ++  
Sbjct  343  GRISLSNVRFLVLDEADRMLDM--GFEPQIRRIVEGEDMPGVMDRQTLMFSATFPRDIQL  400

Query  341  LA-----------------THGPENPKLEMLEK------ILQRQFSSSNSPRGIIFTRTR  377
            LA                 T      K+E +E       +L    S  +    +IF  T+
Sbjct  401  LAKDFLKEYVFLSVGRVGSTSENITQKIEYVEDDDKRSVLLDVLASMPSGGLTLIFVETK  460

Query  378  QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA  437
            + A  L  +L + +               G +S     TQR+++  ++ F+ G   ++VA
Sbjct  461  RMADMLSDFLLRSK--------------IGATSIHGDRTQRERERALELFRSGKTPIMVA  506

Query  438  TSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELI  495
            T+VA  GLDIP+   VV Y L ++    V   GR  RA    +A      G++ + R+LI
Sbjct  507  TAVAARGLDIPNVTHVVNYDLPSDVDDYVHRIGRTGRAGNVGHATAFFNRGNKNIVRDLI  566

Query  496  NEALETLME  504
                E   E
Sbjct  567  ELLKEANQE  575


 Score = 44.8 bits (104),  Expect = 0.003, Method: Composition-based stats.
 Identities = 25/133 (19%), Positives = 39/133 (29%), Gaps = 24/133 (18%)

Query  23   WLPTGAGKT-----------RA--------AAYVAKRHLETVDGAKVVVLVNRVHLVTQH  63
               TG+GKT                     A      +         ++L     LV+Q 
Sbjct  232  CAQTGSGKTGGFLFPILSALFTHGPPPPSAAEMAQGGYNRRKAYPSTLILAPTRELVSQI  291

Query  64   GEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
             +E R+     W     + G          + R  DLL  T   L   +    E   + L
Sbjct  292  HDEARKFTYRSWVKPAVVYGGADIVTQLRQIERGCDLLSATPGRLVDLM----ERGRISL  347

Query  123  TVFSLIVVDECHH  135
            +    +V+DE   
Sbjct  348  SNVRFLVLDEADR  360


>sp|Q5QYF8|RHLB_IDILO ATP-dependent RNA helicase RhlB OS=Idiomarina 
loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR) OX=283942 
GN=rhlB PE=3 SV=1
Length=425

 Score = 144 bits (362),  Expect = 5e-36, Method: Composition-based stats.
 Identities = 58/296 (20%), Positives = 106/296 (36%), Gaps = 56/296 (19%)

Query  247  PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR-----RYNDALLIHDTVRAVD  301
             ++   +G + YE Q  +L+    +      R+   + +     +  + +++ +  R  D
Sbjct  112  LKMGVIYGGEGYEGQKEQLAAQPDILVGTTGRLIDFYKQDLFSLKDIEVVVLDEADRMFD  171

Query  302  ALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPENPKLEMLEK-  356
             L  + D  +       ++    +RL  LF      R  ELA+   + P   ++E L+K 
Sbjct  172  -LGFIDDIRY----LLQKMPDPSKRLNLLFSATLSYRVQELAYEHMNAPTKLEVEPLQKT  226

Query  357  ------------------ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI  398
                              +L          + I+F  T+     +  WL   +       
Sbjct  227  ATRVTEELFYPSKPEKFPLLLTLIEEDWPDKAIVFANTKHGCEKVHGWLVANEH------  280

Query  399  RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL  458
            RA LL G         + Q+ +  +++ F +G L+ LVAT VA  GL IP    V  + L
Sbjct  281  RAGLLTG--------DVPQKKRLRILEDFAEGKLDFLVATDVAARGLHIPEVTHVYNFDL  332

Query  459  LTNEISMVQAR---GRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQ  511
              +    V      GRA A  +  +    E    L       A+E  +   +   +
Sbjct  333  PDDCEDYVHRIGRTGRAGASGAAISLACEEYVYNLP------AIEDYIGHTIPVTK  382


 Score = 43.2 bits (100),  Expect = 0.007, Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 41/119 (34%), Gaps = 14/119 (12%)

Query  26   TGAGKTRAAAY------VAKRHL--ETVDGAKVVVLVNRVHLVTQ-HGEEFRRMLDGRWT  76
            TG GKT  A        + +     +T  G + +++     L  Q   +    +      
Sbjct  55   TGTGKTL-AFLLATFNRLMQNESSEKTESGPRALIMAPTRELAIQIAHDADALIEHCGLK  113

Query  77   VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH  135
            +  + G  G       LA   D+L+ T   L        +++   L    ++V+DE   
Sbjct  114  MGVIYGGEGYEGQKEQLAAQPDILVGTTGRLIDFY----KQDLFSLKDIEVVVLDEADR  168


>sp|Q0CLJ6|DED1_ASPTN ATP-dependent RNA helicase ded1 OS=Aspergillus 
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=ded1 
PE=3 SV=1
Length=674

 Score = 147 bits (371),  Expect = 6e-36, Method: Composition-based stats.
 Identities = 65/309 (21%), Positives = 112/309 (36%), Gaps = 48/309 (16%)

Query  228  PFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR  285
            P  +L+ ++ D+         +     +G      Q+ ++     L      R+  L  R
Sbjct  281  PTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIER  340

Query  286  R-----YNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH  340
                      L++ +  R +D     +    R    +      +R+ L        ++  
Sbjct  341  GRISLVNIKYLILDEADRMLDM--GFEPQIRRIVEGEDMPHVNDRQTLMFSATFPRDIQM  398

Query  341  LA-----------------THGPENPKLEMLEK------ILQRQFSSSNSPRGIIFTRTR  377
            LA                 T      K+E +E       +L    +   S   +IF  T+
Sbjct  399  LARDFLKDYVFLSVGRVGSTSENITQKVEYVEDHDKRSVLLDILHTHGTSGLTLIFVETK  458

Query  378  QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA  437
            + A SL  +L  Q+   T              +     TQR+++  ++ F+ G   +LVA
Sbjct  459  RMADSLSDFLLNQRFPAT--------------AIHGDRTQRERERALEMFRSGRCPILVA  504

Query  438  TSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELI  495
            T+VA  GLDIP+   V+ Y L T+    V   GR  RA  +  A      G+R + R+LI
Sbjct  505  TAVAASGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVRDLI  564

Query  496  NEALETLME  504
            +   E   E
Sbjct  565  DLLKEAHQE  573


 Score = 48.3 bits (113),  Expect = 2e-04, Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 49/142 (35%), Gaps = 25/142 (18%)

Query  15   LEGKNIIIWLPTGAGKT--RAAAYVAKRH--------------LETVDGAKV----VVLV  54
            + G++++    TG+GKT       +++                L      K     ++L 
Sbjct  221  MNGRDLMACAQTGSGKTGGFLFPILSQAFQNGPSPTPAPAGGQLGYGRQRKAYPTSLILA  280

Query  55   NRVHLVTQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTS  113
                LV+Q  +E R+     W     + G     +    + R  DLL+ T   L   +  
Sbjct  281  PTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLI--  338

Query  114  PEEEEHVELTVFSLIVVDECHH  135
              E   + L     +++DE   
Sbjct  339  --ERGRISLVNIKYLILDEADR  358


>sp|Q8LA13|RH11_ARATH DEAD-box ATP-dependent RNA helicase 11 OS=Arabidopsis 
thaliana OX=3702 GN=RH11 PE=1 SV=1
Length=612

 Score = 146 bits (369),  Expect = 7e-36, Method: Composition-based stats.
 Identities = 72/340 (21%), Positives = 116/340 (34%), Gaps = 67/340 (20%)

Query  209  EHSQQPCKQYNLCHRRSQDPFGDLLK---KLMDQIHDHLEMP------ELSRKFGTQMYE  259
            +H ++P         R+  PF  +L    +L  QIHD  +        ++   +G     
Sbjct  217  QHVERPR------GSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIH  270

Query  260  QQVVKLSEAAALAGLQEQRVYALHLRRYND-----ALLIHDTVRAVDALAALQDFYHREH  314
            QQ+ +L     +      R+  L  R          L + +  R +D     Q    R+ 
Sbjct  271  QQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQ---IRKI  327

Query  315  VTKTQILCAERRLLALFD---------------------------DRKNELAHLATHGPE  347
            V +  +     R   LF                               + +        E
Sbjct  328  VEQMDMPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVGSSTDLITQRVEFVQE  387

Query  348  NPKLEMLEKILQRQFSS-SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA  406
            + K   L  +L  Q  +       ++F  T++ A +L  WL   +   T           
Sbjct  388  SDKRSHLMDLLHAQRETQDKQSLTLVFVETKRGADTLENWLCMNEFPAT-----------  436

Query  407  GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV  466
               S     TQ++++  ++ F+ G   +LVAT VA  GLDIPH   VV + L  +    V
Sbjct  437  ---SIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYV  493

Query  467  QARGR-ARADQSVYAF-VATEGSRELKRELINEALETLME  504
               GR  RA +S  A     E + +L R L     E   E
Sbjct  494  HRIGRTGRAGKSGIATAFFNENNAQLARSLAELMQEANQE  533


 Score = 50.2 bits (118),  Expect = 6e-05, Method: Composition-based stats.
 Identities = 29/141 (21%), Positives = 49/141 (35%), Gaps = 16/141 (11%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT------RAAAYVAKRHLETVDGAKVVV-----LVN  55
            Q   I   L  ++++    TG+GKT        +  +  +H+E   G++ V      L  
Sbjct  178  QRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSP  237

Query  56   RVHLVTQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP  114
               L  Q  +E ++        V    G          L R  D+L+ T   L   L   
Sbjct  238  TRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRLNDLL---  294

Query  115  EEEEHVELTVFSLIVVDECHH  135
             E   V + +   + +DE   
Sbjct  295  -ERARVSMQMIRFLALDEADR  314


>sp|O13370|DED1_SCHPO ATP-dependent RNA helicase ded1 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=ded1 
PE=1 SV=1
Length=636

 Score = 146 bits (369),  Expect = 8e-36, Method: Composition-based stats.
 Identities = 68/337 (20%), Positives = 109/337 (32%), Gaps = 67/337 (20%)

Query  214  PCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKF------------GTQMYEQQ  261
            P  Q      R +  +   L  L        ++ E SRKF            G      Q
Sbjct  240  PVDQDAGMGYRPRKAYPTTLI-LAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQ  298

Query  262  VVKLSEAAALAGLQEQRVYALHLR-----RYNDALLIHDTVRAVDALAALQDFYHREHVT  316
            + ++ +   L      R+  L  R          L++ +  R +D     Q    R  V 
Sbjct  299  IRQIDQGCDLLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLDMGFEPQ---IRHIVE  355

Query  317  KTQILCAERRLLALFD---------------------------DRKNELAHLATHGPENP  349
               +   E R   +F                                 +     H  ++ 
Sbjct  356  GADMTSVEERQTLMFSATFPRDIQLLARDFLKDYVFLSVGRVGSTSENITQKVVHVEDSE  415

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K   L  IL            +IF  T++ A +L  +L       T              
Sbjct  416  KRSYLLDILHTL---PPEGLTLIFVETKRMADTLTDYLLNSNFPAT--------------  458

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
            S     TQR+++  ++ F+ G  +++VAT+VA  GLDIP+   V+ Y L T+    V   
Sbjct  459  SIHGDRTQRERERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVHRI  518

Query  470  GR-ARADQSVYAF-VATEGSRELKRELINEALETLME  504
            GR  RA  +  A       ++ + +ELI    E   E
Sbjct  519  GRTGRAGNTGQAVAFFNRNNKGIAKELIELLQEANQE  555


 Score = 49.4 bits (116),  Expect = 9e-05, Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 49/149 (33%), Gaps = 24/149 (16%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTR---------------AAAYVAKRHLETVDGAKV-  50
            Q   I     G++++    TG+GKT                AA  V +         K  
Sbjct  196  QKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAY  255

Query  51   ---VVLVNRVHLVTQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAEL  106
               ++L     LV Q  EE R+     W     + G    RA    + +  DLL  T   
Sbjct  256  PTTLILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSATPGR  315

Query  107  LQMALTSPEEEEHVELTVFSLIVVDECHH  135
            L   +    +   + L     +V+DE   
Sbjct  316  LVDLI----DRGRISLANIKFLVLDEADR  340


>sp|Q8XA87|DEAD_ECO57 ATP-dependent RNA helicase DeaD OS=Escherichia 
coli O157:H7 OX=83334 GN=deaD PE=3 SV=3
Length=629

 Score = 146 bits (367),  Expect = 2e-35, Method: Composition-based stats.
 Identities = 65/345 (19%), Positives = 131/345 (38%), Gaps = 50/345 (14%)

Query  207  LQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLS  266
            L ++     K   +            + + M     H+    +   +G Q Y+ Q+  L 
Sbjct  64   LLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR  123

Query  267  EAAALAGLQEQRVYALHLRRYNDAL-----LIHDTVRAVDALAALQDFY---------HR  312
            +   +      R+   HL+R    L     L+ D    +  +  ++D           H+
Sbjct  124  QGPQIVVGTPGRLLD-HLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ  182

Query  313  EHVTKTQILCAERRLLALFDDRKNEL---AHLATHGPENP---------KLEMLEKILQR  360
              +    +  A RR+   F     E+   + + T    +          K E L + L+ 
Sbjct  183  TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA  242

Query  361  QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ  420
            +   +     IIF RT+ +   +   L++               G  +++ +  M Q  +
Sbjct  243  EDFDA----AIIFVRTKNATLEVAEALERN--------------GYNSAALNGDMNQALR  284

Query  421  QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVY  479
            ++ +++ +DG L++L+AT VA  GLD+   ++VV Y +  +  S V   GR  RA ++  
Sbjct  285  EQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGR  344

Query  480  AFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD  524
            A +  E     +R L N  +E  M+  +  V+  +      +  +
Sbjct  345  ALLFVENRE--RRLLRN--IERTMKLTIPEVELPNAELLGKRRLE  385


 Score = 57.9 bits (138),  Expect = 2e-07, Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 53/131 (40%), Gaps = 9/131 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAY-VAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q E I   L G++++    TG+GKT A +  + +     +   +++VL     L  Q  E
Sbjct  33   QAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAE  92

Query  66   E---FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
                F + + G   V    G          L +   +++ T   L   L    +   ++L
Sbjct  93   AMTDFSKHMRGVNVVALYGGQRYDVQLR-ALRQGPQIVVGTPGRLLDHL----KRGTLDL  147

Query  123  TVFSLIVVDEC  133
            +  S +V+DE 
Sbjct  148  SKLSGLVLDEA  158


>sp|P0A9P8|DEAD_SHIFL ATP-dependent RNA helicase DeaD OS=Shigella 
flexneri OX=623 GN=deaD PE=3 SV=2
Length=629

 Score = 145 bits (366),  Expect = 2e-35, Method: Composition-based stats.
 Identities = 65/345 (19%), Positives = 131/345 (38%), Gaps = 50/345 (14%)

Query  207  LQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLS  266
            L ++     K   +            + + M     H+    +   +G Q Y+ Q+  L 
Sbjct  64   LLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR  123

Query  267  EAAALAGLQEQRVYALHLRRYNDAL-----LIHDTVRAVDALAALQDFY---------HR  312
            +   +      R+   HL+R    L     L+ D    +  +  ++D           H+
Sbjct  124  QGPQIVVGTPGRLLD-HLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ  182

Query  313  EHVTKTQILCAERRLLALFDDRKNEL---AHLATHGPENP---------KLEMLEKILQR  360
              +    +  A RR+   F     E+   + + T    +          K E L + L+ 
Sbjct  183  TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA  242

Query  361  QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ  420
            +   +     IIF RT+ +   +   L++               G  +++ +  M Q  +
Sbjct  243  EDFDA----AIIFVRTKNATLEVAEALERN--------------GYNSAALNGDMNQALR  284

Query  421  QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVY  479
            ++ +++ +DG L++L+AT VA  GLD+   ++VV Y +  +  S V   GR  RA ++  
Sbjct  285  EQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGR  344

Query  480  AFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD  524
            A +  E     +R L N  +E  M+  +  V+  +      +  +
Sbjct  345  ALLFVENRE--RRLLRN--IERTMKLTIPEVELPNAELLGKRRLE  385


 Score = 57.5 bits (137),  Expect = 3e-07, Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 53/131 (40%), Gaps = 9/131 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAY-VAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q E I   L G++++    TG+GKT A +  + +     +   +++VL     L  Q  E
Sbjct  33   QAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAE  92

Query  66   E---FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
                F + + G   V    G          L +   +++ T   L   L    +   ++L
Sbjct  93   AMTDFSKHMRGVNVVALYGGQRYDVQLR-ALRQGPQIVVGTPGRLLDHL----KRGTLDL  147

Query  123  TVFSLIVVDEC  133
            +  S +V+DE 
Sbjct  148  SKLSGLVLDEA  158


>sp|P0A9P6|DEAD_ECOLI ATP-dependent RNA helicase DeaD OS=Escherichia 
coli (strain K12) OX=83333 GN=deaD PE=1 SV=2
Length=629

 Score = 145 bits (366),  Expect = 2e-35, Method: Composition-based stats.
 Identities = 65/345 (19%), Positives = 131/345 (38%), Gaps = 50/345 (14%)

Query  207  LQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLS  266
            L ++     K   +            + + M     H+    +   +G Q Y+ Q+  L 
Sbjct  64   LLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR  123

Query  267  EAAALAGLQEQRVYALHLRRYNDAL-----LIHDTVRAVDALAALQDFY---------HR  312
            +   +      R+   HL+R    L     L+ D    +  +  ++D           H+
Sbjct  124  QGPQIVVGTPGRLLD-HLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ  182

Query  313  EHVTKTQILCAERRLLALFDDRKNEL---AHLATHGPENP---------KLEMLEKILQR  360
              +    +  A RR+   F     E+   + + T    +          K E L + L+ 
Sbjct  183  TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA  242

Query  361  QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ  420
            +   +     IIF RT+ +   +   L++               G  +++ +  M Q  +
Sbjct  243  EDFDA----AIIFVRTKNATLEVAEALERN--------------GYNSAALNGDMNQALR  284

Query  421  QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVY  479
            ++ +++ +DG L++L+AT VA  GLD+   ++VV Y +  +  S V   GR  RA ++  
Sbjct  285  EQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGR  344

Query  480  AFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD  524
            A +  E     +R L N  +E  M+  +  V+  +      +  +
Sbjct  345  ALLFVENRE--RRLLRN--IERTMKLTIPEVELPNAELLGKRRLE  385


 Score = 57.5 bits (137),  Expect = 3e-07, Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 53/131 (40%), Gaps = 9/131 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAY-VAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q E I   L G++++    TG+GKT A +  + +     +   +++VL     L  Q  E
Sbjct  33   QAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAE  92

Query  66   E---FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
                F + + G   V    G          L +   +++ T   L   L    +   ++L
Sbjct  93   AMTDFSKHMRGVNVVALYGGQRYDVQLR-ALRQGPQIVVGTPGRLLDHL----KRGTLDL  147

Query  123  TVFSLIVVDEC  133
            +  S +V+DE 
Sbjct  148  SKLSGLVLDEA  158


>sp|P0A9P7|DEAD_ECOL6 ATP-dependent RNA helicase DeaD OS=Escherichia 
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 
GN=deaD PE=3 SV=2
Length=629

 Score = 145 bits (366),  Expect = 2e-35, Method: Composition-based stats.
 Identities = 65/345 (19%), Positives = 131/345 (38%), Gaps = 50/345 (14%)

Query  207  LQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLS  266
            L ++     K   +            + + M     H+    +   +G Q Y+ Q+  L 
Sbjct  64   LLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR  123

Query  267  EAAALAGLQEQRVYALHLRRYNDAL-----LIHDTVRAVDALAALQDFY---------HR  312
            +   +      R+   HL+R    L     L+ D    +  +  ++D           H+
Sbjct  124  QGPQIVVGTPGRLLD-HLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ  182

Query  313  EHVTKTQILCAERRLLALFDDRKNEL---AHLATHGPENP---------KLEMLEKILQR  360
              +    +  A RR+   F     E+   + + T    +          K E L + L+ 
Sbjct  183  TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA  242

Query  361  QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ  420
            +   +     IIF RT+ +   +   L++               G  +++ +  M Q  +
Sbjct  243  EDFDA----AIIFVRTKNATLEVAEALERN--------------GYNSAALNGDMNQALR  284

Query  421  QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVY  479
            ++ +++ +DG L++L+AT VA  GLD+   ++VV Y +  +  S V   GR  RA ++  
Sbjct  285  EQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGR  344

Query  480  AFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD  524
            A +  E     +R L N  +E  M+  +  V+  +      +  +
Sbjct  345  ALLFVENRE--RRLLRN--IERTMKLTIPEVELPNAELLGKRRLE  385


 Score = 57.5 bits (137),  Expect = 3e-07, Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 53/131 (40%), Gaps = 9/131 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAY-VAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q E I   L G++++    TG+GKT A +  + +     +   +++VL     L  Q  E
Sbjct  33   QAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAE  92

Query  66   E---FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
                F + + G   V    G          L +   +++ T   L   L    +   ++L
Sbjct  93   AMTDFSKHMRGVNVVALYGGQRYDVQLR-ALRQGPQIVVGTPGRLLDHL----KRGTLDL  147

Query  123  TVFSLIVVDEC  133
            +  S +V+DE 
Sbjct  148  SKLSGLVLDEA  158


>sp|Q8TFK8|DED1_CANGA ATP-dependent RNA helicase DED1 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DED1 PE=3 SV=1
Length=617

 Score = 144 bits (364),  Expect = 3e-35, Method: Composition-based stats.
 Identities = 61/357 (17%), Positives = 112/357 (31%), Gaps = 53/357 (15%)

Query  228  PFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR  285
            P  +L  ++ D+         +     +G      Q+ ++     L      R+  L  R
Sbjct  236  PTRELATQIFDEAKKFCYRSWVKPCVVYGGAPIGNQMREMDHGCDLLVATPGRLNDLLER  295

Query  286  RYND-----ALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLAL---FDDRKNE  337
                      L++ +  R +D     +                ER+ L     F      
Sbjct  296  GKVSLSNVKYLVLDEADRMLDM--GFEPQIRHIVEDCDMPPTGERQTLMFSATFPHDIQH  353

Query  338  LAHLATHGP------------ENPKLEMLE-------KILQRQFSSSNSPRGIIFTRTRQ  378
            LA    H              EN    +L          L    ++SN    +IF  T++
Sbjct  354  LARDFLHDYIFLSVGRVGSTSENITQRILYVENRDKNSALLDLLAASNDNLTLIFVETKR  413

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT  438
             A  L  +L              ++     ++     +Q +++  +  F+ G  N+LVAT
Sbjct  414  MADQLTDFL--------------IMQNFSATAIHGDRSQAERERALAAFRSGRANILVAT  459

Query  439  SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKR----  492
            +VA  GLDIP+   V+ Y L ++    V   GR  RA  +  A       +  + +    
Sbjct  460  AVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGVATAFFNRDNNNIVKGLYE  519

Query  493  --ELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQF  547
              E  N+ +   +E  +  V        ++   +        R         Q  + 
Sbjct  520  ILEEANQEIPPFLEDCLREVSFSRSGSNRSTRGNRSSNTRDYRKHGGNGSFGQNSRN  576


 Score = 45.6 bits (106),  Expect = 0.002, Method: Composition-based stats.
 Identities = 27/137 (20%), Positives = 46/137 (34%), Gaps = 21/137 (15%)

Query  16   EGKNIIIWLPTGAGKT--RAAAYVAKRHLETVDGAK--------------VVVLVNRVHL  59
            +G++++    TG+GKT       +++  L                      VV+     L
Sbjct  181  KGRDLMACAQTGSGKTGGFLFPVLSESFLTGPAEKAANDGYSYQRKAFPTAVVMAPTREL  240

Query  60   VTQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEE  118
             TQ  +E ++     W     + G          +    DLL+ T   L   L    E  
Sbjct  241  ATQIFDEAKKFCYRSWVKPCVVYGGAPIGNQMREMDHGCDLLVATPGRLNDLL----ERG  296

Query  119  HVELTVFSLIVVDECHH  135
             V L+    +V+DE   
Sbjct  297  KVSLSNVKYLVLDEADR  313


>sp|Q6CB69|DED1_YARLI ATP-dependent RNA helicase DED1 OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DED1 PE=3 
SV=1
Length=618

 Score = 144 bits (362),  Expect = 6e-35, Method: Composition-based stats.
 Identities = 66/328 (20%), Positives = 119/328 (36%), Gaps = 35/328 (11%)

Query  203  CCPQLQEHSQQPCKQYNLCHRRSQDPFGD-LLKKLMDQIHDHLEMPELSRKFGTQMYEQQ  261
                + +   +  K       R    +G   + + M  I    ++   +      + ++ 
Sbjct  253  TRELVSQIYDEAKKFAYRSWVRPCVVYGGADIGEQMRNIERGCDLLVAAPGRLVDLIDRG  312

Query  262  VVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQIL  321
             V L     L   +  R+           +     +RA+   + + D   R+ +  +   
Sbjct  313  KVSLENIKYLVLDEADRMLD---------MGFEPQIRAIVQGSGMPDVNERQTLMFSATF  363

Query  322  CAERRLLALFDDRKNELAHL----ATHGPENPKLEMLEK-----ILQRQFSSSNSPRGII  372
                ++LA    +      +    +T      K+E +E       L    S++     ++
Sbjct  364  PRNIQMLARDFLKDYIFLSVGRVGSTSENITQKVEYVEDGDKISALLDILSAAGKGLTLV  423

Query  373  FTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTL  432
            F  T++ A  L   LQ +    T              S     +QRD++  ++ F+DGT 
Sbjct  424  FVETKRGADYLCDVLQSEDFPAT--------------SIHGDRSQRDRERALEMFRDGTT  469

Query  433  NLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSREL  490
             +LVAT+VA  GLDIP+   VV Y L T+    V   GR  RA  +  A      G++ +
Sbjct  470  PILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNKGI  529

Query  491  KRELINEALETLMEQAVAAVQKMDQAEY  518
             RELI+   E   +          +A Y
Sbjct  530  VRELIDILKEAHQDVPQFLESTAREASY  557


 Score = 44.8 bits (104),  Expect = 0.003, Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 51/152 (34%), Gaps = 25/152 (16%)

Query  2    ELRSYQWEVIMPALEGKNIIIWLPTGAGKT--RAAAYVAKRHLETVDG-----------A  48
             ++ Y   ++     G++++    TG+GKT       +++                    
Sbjct  185  PVQKYSVPIVAA---GRDLMACAQTGSGKTGGFLFPVLSQSFFHGPSPTPQPTGPRHMHK  241

Query  49   K----VVVLVNRVHLVTQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICT  103
            K     +VL     LV+Q  +E ++     W     + G         ++ R  DLL+  
Sbjct  242  KAYPTALVLAPTRELVSQIYDEAKKFAYRSWVRPCVVYGGADIGEQMRNIERGCDLLVAA  301

Query  104  AELLQMALTSPEEEEHVELTVFSLIVVDECHH  135
               L   +    +   V L     +V+DE   
Sbjct  302  PGRLVDLI----DRGKVSLENIKYLVLDEADR  329


>sp|Q2R1M8|RH52C_ORYSJ DEAD-box ATP-dependent RNA helicase 52C 
OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0599500 PE=3 
SV=1
Length=623

 Score = 143 bits (361),  Expect = 8e-35, Method: Composition-based stats.
 Identities = 63/290 (22%), Positives = 99/290 (34%), Gaps = 54/290 (19%)

Query  252  KFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND-----ALLIHDTVRAVDALAAL  306
             +G     QQ+  L     +      R+  L  R          L + +  R +D     
Sbjct  269  AYGGAPINQQLRDLERGVDILVATPGRLVDLLERARVSLQSIRYLALDEADRMLDM--GF  326

Query  307  QDFYHREHVTKTQILCAERRLLALFDD-RKNELAHLATHGPEN-----------------  348
            +    R  V +  +     R   LF      E+  +A+   EN                 
Sbjct  327  EPQVRRI-VEQMDMPPPGARQTMLFSATFPKEIQRMASDFLENYIFLAVGRVGSSTDLIV  385

Query  349  ---------PKLEMLEKILQRQFSSSNSPR---GIIFTRTRQSAHSLLLWLQQQQGLQTV  396
                      K   L  +L  Q  S+   +    ++F  T++ A SL  WL         
Sbjct  386  QRVEFVQEADKRSHLMDLLHAQRDSATPGKPTLTLVFVETKRGADSLEHWL---------  436

Query  397  DIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY  456
                  + G   +S      Q++++  ++ F+ G   +LVAT VA  GLDIPH   VV +
Sbjct  437  -----CMNGFPATSIHGDRNQQEREYALRSFKSGHTPILVATDVAARGLDIPHVAHVVNF  491

Query  457  GLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLME  504
             L  +    V   GR  RA +S  A     E +  + R L     E+  E
Sbjct  492  DLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNSSMARSLAELMQESNQE  541


 Score = 48.3 bits (113),  Expect = 2e-04, Method: Composition-based stats.
 Identities = 32/146 (22%), Positives = 50/146 (34%), Gaps = 24/146 (16%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAY---VAKRHLETVDGAK------------VV  51
            Q   I  +L G++++    TG+GKT  AA+   +    +      +             +
Sbjct  182  QRYAIPISLAGRDLMACAQTGSGKT--AAFCFPIISGIMRGPPAQRPQRGGMRTACPLAL  239

Query  52   VLVNRVHLVTQHGEEFRRML--DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQM  109
            +L     L  Q  EE R+     G   V    G    +     L R  D+L+ T   L  
Sbjct  240  ILSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRD-LERGVDILVATPGRLVD  298

Query  110  ALTSPEEEEHVELTVFSLIVVDECHH  135
             L    E   V L     + +DE   
Sbjct  299  LL----ERARVSLQSIRYLALDEADR  320


>sp|P33906|DEAD_KLEPN ATP-dependent RNA helicase DeaD OS=Klebsiella 
pneumoniae OX=573 GN=deaD PE=3 SV=3
Length=643

 Score = 143 bits (361),  Expect = 1e-34, Method: Composition-based stats.
 Identities = 68/344 (20%), Positives = 134/344 (39%), Gaps = 51/344 (15%)

Query  207  LQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLS  266
            L  +     +   +            + + M +   H+    +   +G Q Y+ Q+  L 
Sbjct  64   LLNNIDPELRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALR  123

Query  267  EAAALAGLQEQRVYALHLRRYNDAL-----LIHDTVRAVDALAALQDFY---------HR  312
            +   +      R+   HL+R    L     L+ D    +  +  ++D           H+
Sbjct  124  QGPQIVVGTPGRLLD-HLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ  182

Query  313  EHVTKTQILCAERRLLALFDDRKNEL---AHLATHGPENP---------KLEMLEKILQR  360
              +    +  A RR+   F     E+   + + T    +          K E L + L+ 
Sbjct  183  TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTAYGMRKNEALVRFLEA  242

Query  361  QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ  420
            +   +     IIF RT+ +   +   L++               G  +++ +  M Q  +
Sbjct  243  EDFDA----AIIFVRTKNATLEVAEALERN--------------GYNSAALNGDMNQALR  284

Query  421  QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVY  479
            ++ +++ +DG L++L+AT VA  GLD+   ++VV Y +  +  S V   GR  RA ++  
Sbjct  285  EQALERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGR  344

Query  480  AFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIR  523
            A +  E     +R L N  +E  M+  +  V+ +  AE  +K R
Sbjct  345  ALLFVENRE--RRLLRN--IERTMKLTIPEVE-LPNAELLSKRR  383


 Score = 57.9 bits (138),  Expect = 2e-07, Method: Composition-based stats.
 Identities = 30/131 (23%), Positives = 55/131 (42%), Gaps = 9/131 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE  65
            Q E I   L+G++++    TG+GKT A +     +++    A +++VL     L  Q  E
Sbjct  33   QAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNNIDPELRAPQILVLAPTRELAVQVAE  92

Query  66   E---FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
                F + + G   V    G          L +   +++ T   L   L    +   ++L
Sbjct  93   AMTEFSKHMRGVNVVALYGGQRYDVQLR-ALRQGPQIVVGTPGRLLDHL----KRGTLDL  147

Query  123  TVFSLIVVDEC  133
            +  S +V+DE 
Sbjct  148  SKLSGLVLDEA  158


>sp|A4RHF1|DED1_PYRO7 ATP-dependent RNA helicase DED1 OS=Pyricularia 
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 
GN=DED1 PE=3 SV=2
Length=671

 Score = 143 bits (361),  Expect = 1e-34, Method: Composition-based stats.
 Identities = 57/283 (20%), Positives = 105/283 (37%), Gaps = 26/283 (9%)

Query  230  GDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRV----YALHLR  285
            G  +   + QI    ++   +      + E+  + L     L   +  R+    +   +R
Sbjct  311  GADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIR  370

Query  286  RYNDALLI-HDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATH  344
            R  +   + +   R     +A    Y ++             +  +    +N    +   
Sbjct  371  RIVEGEDMPNVQDRQTLMFSATFPGYIQQLARDFLKDYIFLSVGRVGSTSENITQRVMEV  430

Query  345  GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI  404
               + K+  L  +L            +IF  T+++A  L  +LQ Q    T         
Sbjct  431  KHRDDKISHLLDLLSTH----GGGLTLIFVETKRNADELSDFLQNQNLPAT---------  477

Query  405  GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
                 S     TQR+++  ++ F+ G   +LVAT+VA  GLDIP+   V+ Y L T+   
Sbjct  478  -----SIHGDRTQRERERALEMFRTGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDD  532

Query  465  MVQARGR-ARADQSV--YAFVATEGSRELKRELINEALETLME  504
             V   GR  RA  +    AF   + +  + +EL+N   E   +
Sbjct  533  YVHRIGRTGRAGNTGIATAFFDMKDNSGVAQELLNILKEAKQD  575


 Score = 47.9 bits (112),  Expect = 3e-04, Method: Composition-based stats.
 Identities = 25/142 (18%), Positives = 47/142 (33%), Gaps = 25/142 (18%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKV--------------------VVLV  54
            + G++++    TG+GKT    +           + +                    ++L 
Sbjct  222  MGGRDLMACAQTGSGKTGGFLFPILSQAFKTGPSPIPATNQGPGGYGRQRKAYPTSLILA  281

Query  55   NRVHLVTQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTS  113
                LV+Q  +E R+     W     + G     +    + R  DLL+ T   L   +  
Sbjct  282  PTRELVSQIYDESRKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLI--  339

Query  114  PEEEEHVELTVFSLIVVDECHH  135
              E   + L     +V+DE   
Sbjct  340  --ERGRISLCNIKYLVLDEADR  359


>sp|Q75HJ0|RH37_ORYSJ DEAD-box ATP-dependent RNA helicase 37 OS=Oryza 
sativa subsp. japonica OX=39947 GN=PL10A PE=2 SV=1
Length=637

 Score = 143 bits (360),  Expect = 1e-34, Method: Composition-based stats.
 Identities = 67/361 (19%), Positives = 121/361 (34%), Gaps = 48/361 (13%)

Query  160  LPQVLGLTAS--PGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQ-----LQEHSQ  212
             P + G+ +S  P     S+    +  +L     L        +    Q     +  +  
Sbjct  230  FPIISGIMSSRPPQRPRGSRTAYPLALILSPTRELSVQIHEEARKFAYQTGVRVVVAYGG  289

Query  213  QPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALA  272
             P  Q      R  +       +LMD +       ++ +       ++ +          
Sbjct  290  APIHQQLRELERGVEILVATPGRLMDLLERARVSLQMVKYLALDEADRML----------  339

Query  273  GLQEQRVYALHLRRYNDALLIHD-TVRAVDALAALQDFYHREHVTKT---QILCAERRLL  328
                   +   +R+  + + +    VR     +A      +   +      I  A  R+ 
Sbjct  340  ----DMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPKEIQRMASDFLADYIFLAVGRVG  395

Query  329  ALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPR---GIIFTRTRQSAHSLLL  385
            +  D     +  +     E  K   L  +L  Q ++    +    ++F  T++ A +L  
Sbjct  396  SSTDLIAQRVEFVL----EADKRSYLMDLLHAQKANGTHGKQALTLVFVETKRGADALEN  451

Query  386  WLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGL  445
            WL                 G   +S     TQ++++  ++ F+ G   +LVAT VA  GL
Sbjct  452  WLYTN--------------GFPATSIHGDRTQQEREYALRSFKSGATPILVATDVAARGL  497

Query  446  DIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLM  503
            DIPH   V+ + L  +    V   GR  RA +S  A     EG+  L R L     E   
Sbjct  498  DIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNEGNLSLARPLCELMQEANQ  557

Query  504  E  504
            E
Sbjct  558  E  558


 Score = 46.3 bits (108),  Expect = 8e-04, Method: Composition-based stats.
 Identities = 30/144 (21%), Positives = 52/144 (36%), Gaps = 22/144 (15%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAY---VAKRHLETVDGAK----------VVVL  53
            Q   I  ++ G++++    TG+GKT  AA+   +    + +    +           ++L
Sbjct  201  QRYAIPISIAGRDLMACAQTGSGKT--AAFCFPIISGIMSSRPPQRPRGSRTAYPLALIL  258

Query  54   VNRVHLVTQHGEEFRRML--DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMAL  111
                 L  Q  EE R+     G   V    G    +     L R  ++L+ T   L   L
Sbjct  259  SPTRELSVQIHEEARKFAYQTGVRVVVAYGGAPIHQQLR-ELERGVEILVATPGRLMDLL  317

Query  112  TSPEEEEHVELTVFSLIVVDECHH  135
                E   V L +   + +DE   
Sbjct  318  ----ERARVSLQMVKYLALDEADR  337


>sp|Q84W89|RH37_ARATH DEAD-box ATP-dependent RNA helicase 37 OS=Arabidopsis 
thaliana OX=3702 GN=RH37 PE=2 SV=2
Length=633

 Score = 143 bits (359),  Expect = 2e-34, Method: Composition-based stats.
 Identities = 75/342 (22%), Positives = 118/342 (35%), Gaps = 69/342 (20%)

Query  209  EHSQQPCKQYNLCHRRSQDPFGDLLK---KLMDQIHDHLEMP------ELSRKFGTQMYE  259
            +H Q+P         R+  P   +L    +L  QIHD  +        ++   +G     
Sbjct  225  QHVQRPR------GSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPIN  278

Query  260  QQVVKLSEAAALAGLQEQRVYALHLRRYND-----ALLIHDTVRAVDALAALQDFYHREH  314
            QQ+ +L     +      R+  L  R          L + +  R +D     Q    R+ 
Sbjct  279  QQLRELERGVDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQ---IRKI  335

Query  315  VTKTQILCAERRLLALFDD-RKNELAHLA--------------------------THGPE  347
            V +  +     R   LF      E+  LA                              +
Sbjct  336  VEQMDMPPRGVRQTLLFSATFPREIQRLAADFLANYIFLAVGRVGSSTDLIVQRVEFVLD  395

Query  348  NPKLEMLEKILQRQFSSS---NSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI  404
            + K   L  +L  Q  +         ++F  T++ A SL  WL               + 
Sbjct  396  SDKRSHLMDLLHAQRENGIQGKQALTLVFVETKRGADSLENWL--------------CIN  441

Query  405  GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
            G   +S     TQ++++  ++ F+ G   +LVAT VA  GLDIPH   VV + L  +   
Sbjct  442  GFPATSIHGDRTQQEREVALKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDD  501

Query  465  MVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLME  504
             V   GR  RA +S  A     +G+  L R L     E   E
Sbjct  502  YVHRIGRTGRAGKSGLATAFFNDGNTSLARPLAELMQEANQE  543


 Score = 53.3 bits (126),  Expect = 6e-06, Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 52/141 (37%), Gaps = 16/141 (11%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT------RAAAYVAKRHLETVDGAKVVV-----LVN  55
            Q   I   LEG++++    TG+GKT        +  +  +H++   G++ V      L  
Sbjct  186  QRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSP  245

Query  56   RVHLVTQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP  114
               L +Q  +E ++        V    G          L R  D+L+ T   L   L   
Sbjct  246  TRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRELERGVDILVATPGRLNDLL---  302

Query  115  EEEEHVELTVFSLIVVDECHH  135
             E   V + +   + +DE   
Sbjct  303  -ERARVSMQMIRFLALDEADR  322


>sp|Q6FP38|DBP1_CANGA ATP-dependent RNA helicase DBP1 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DBP1 PE=3 SV=1
Length=604

 Score = 142 bits (357),  Expect = 2e-34, Method: Composition-based stats.
 Identities = 66/352 (19%), Positives = 119/352 (34%), Gaps = 50/352 (14%)

Query  228  PFGDLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR  285
            P  +L  ++ D+   +     +     +G     QQ+  +     L      R+  L  R
Sbjct  229  PTRELAIQIFDEAKKYTYRSWVKPYVVYGGAPIGQQMRDMDRGCNLLVATPGRLNDLLER  288

Query  286  RY-----NDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH  340
                      L++ +  R +D     +                +R+ L        E+ H
Sbjct  289  GKISLVNVKYLVLDEADRMLDM--GFEPQIRHIVEDCDMPSVNDRQTLMFSATFPREIQH  346

Query  341  LA-----------------THGPENPKLEMLEKI-----LQRQFSSSNSPRGIIFTRTRQ  378
            LA                 T      K+  +E       L     +      ++F  T++
Sbjct  347  LARDFLKDYIFLSVGRVGSTSENIQQKVLFVEDYDKNSALLDILINEIDGLTLVFVETKR  406

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT  438
             A  L  +L  Q      + +A  + G          TQ +++  +  F++G  N+LVAT
Sbjct  407  MADQLTDFLIVQ------NFKATAIHG--------DRTQAERERALHAFRNGIANILVAT  452

Query  439  SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELIN  496
            +VA  GLDIP+   V+ Y L T+    V   GR  RA     A       S  + +EL++
Sbjct  453  AVAARGLDIPNVTNVINYDLPTDIDDYVHRIGRTGRAGNVGVATSFFNSNSMNIAKELMD  512

Query  497  EALETLMEQAVAAVQKMDQAE-YQAKIRDLQQAALTKRAAQAAQRENQRQQF  547
               E   E     V  +  +  +    R+ +  +   R   +  R+ +    
Sbjct  513  LLTEANQEVPQFLVNMVQDSMRFGRGGRNSRTGS--NRGRGSNTRDYRHSNK  562


 Score = 40.6 bits (93),  Expect = 0.055, Method: Composition-based stats.
 Identities = 25/139 (18%), Positives = 46/139 (33%), Gaps = 23/139 (17%)

Query  15   LEGKNIIIWLPTGAGKT--RAAAYVAKRHL-------ETVDGAK-------VVVLVNRVH  58
             + ++++    TG+GKT       +++  L       E    +         +VL     
Sbjct  173  TKNRDLMACAQTGSGKTGGFLFPVLSELFLNGPAPLPEHTRHSYMRKCYPSALVLAPTRE  232

Query  59   LVTQHGEEFRRMLDGRWTV--TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE  116
            L  Q  +E ++     W        G    +     + R  +LL+ T   L   L    E
Sbjct  233  LAIQIFDEAKKYTYRSWVKPYVVYGGAPIGQQMRD-MDRGCNLLVATPGRLNDLL----E  287

Query  117  EEHVELTVFSLIVVDECHH  135
               + L     +V+DE   
Sbjct  288  RGKISLVNVKYLVLDEADR  306


>sp|Q6BU54|DED1_DEBHA ATP-dependent RNA helicase DED1 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / 
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DED1 PE=3 SV=1
Length=630

 Score = 142 bits (358),  Expect = 2e-34, Method: Composition-based stats.
 Identities = 60/308 (19%), Positives = 110/308 (36%), Gaps = 47/308 (15%)

Query  228  PFGDLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR  285
            P  +L+ ++ D+         +     +G      Q+  L     L      R+  L  R
Sbjct  247  PTRELVSQIFDEAKKFAYRSWVRPSVVYGGADIGGQIRNLERGCDLLVATPGRLKDLLER  306

Query  286  RYND-----ALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH  340
                      L++ +  R +D     +                +R+ L        E+  
Sbjct  307  GRVSLASIKYLVLDEADRMLDM--GFEPQIRHIVQECDMPGVEDRQTLMFSATFPKEIQF  364

Query  341  LA-----------------THGPENPKL-----EMLEKILQRQFSSSNSPRGIIFTRTRQ  378
            LA                 T      K+     E  + +L    S++++   IIFT T++
Sbjct  365  LARDFLKEYIFLSVGRVGSTSENITQKILYVEDEEKKSVLLDLLSANDNGLTIIFTETKR  424

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT  438
             A +L  +L  Q              G   ++     +Q ++++ +  F+ GT  +LVAT
Sbjct  425  MADNLADFLYDQ--------------GFPATAIHGDRSQYEREKALAAFKTGTAPILVAT  470

Query  439  SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELIN  496
            +VA  GLDIP+ + +V Y L ++    V   GR  RA     A       ++ + + L++
Sbjct  471  AVAARGLDIPNVSHIVNYDLPSDIDDYVHRIGRTGRAGNIGIATAFFNRNNKNIVKGLVD  530

Query  497  EALETLME  504
               E   E
Sbjct  531  LLTEANQE  538


 Score = 46.3 bits (108),  Expect = 8e-04, Method: Composition-based stats.
 Identities = 30/151 (20%), Positives = 57/151 (38%), Gaps = 24/151 (16%)

Query  2    ELRSYQWEVIMPALEGKNIIIWLPTGAGKT--RAAAYVAKRHLET----------VDGAK  49
             ++ Y   ++     G++++    TG+GKT       +++ ++                K
Sbjct  181  PVQKYSVPIVAA---GRDLMACAQTGSGKTGGFLFPVLSESYMNGPAEVPETAGAFSSHK  237

Query  50   V----VVLVNRVHLVTQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTA  104
            V    +V+     LV+Q  +E ++     W   + + G         +L R  DLL+ T 
Sbjct  238  VYPTALVMAPTRELVSQIFDEAKKFAYRSWVRPSVVYGGADIGGQIRNLERGCDLLVATP  297

Query  105  ELLQMALTSPEEEEHVELTVFSLIVVDECHH  135
              L+  L    E   V L     +V+DE   
Sbjct  298  GRLKDLL----ERGRVSLASIKYLVLDEADR  324


>sp|P06634|DED1_YEAST ATP-dependent RNA helicase DED1 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DED1 
PE=1 SV=2
Length=604

 Score = 141 bits (356),  Expect = 3e-34, Method: Composition-based stats.
 Identities = 66/331 (20%), Positives = 110/331 (33%), Gaps = 53/331 (16%)

Query  211  SQQPCKQYNLCHRR------SQDPFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQV  262
            S QP  Q +   R+         P  +L  ++ D+         +     +G      Q+
Sbjct  210  SPQPESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQL  269

Query  263  VKLSEAAALAGLQEQRVYALHLR-----RYNDALLIHDTVRAVDALAALQDFYHREHVTK  317
             ++     L      R+  L  R          L++ +  R +D     +          
Sbjct  270  REIERGCDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDM--GFEPQIRHIVEDC  327

Query  318  TQILCAERRLLALFDDRKNELAHLA-----------------THGPENPKL-----EMLE  355
                  ER+ L        ++ HLA                 T      K+     +  +
Sbjct  328  DMTPVGERQTLMFSATFPADIQHLARDFLSDYIFLSVGRVGSTSENITQKVLYVENQDKK  387

Query  356  KILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHM  415
              L    S+S     +IF  T++ A  L  +L  Q      + RA  + G          
Sbjct  388  SALLDLLSASTDGLTLIFVETKRMADQLTDFLIMQ------NFRATAIHG--------DR  433

Query  416  TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA  474
            TQ +++  +  F+ G   LLVAT+VA  GLDIP+   V+ Y L ++    V   GR  RA
Sbjct  434  TQSERERALAAFRSGAATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRA  493

Query  475  DQSVYAF-VATEGSRELKRELINEALETLME  504
              +  A       +  + + L     E   E
Sbjct  494  GNTGLATAFFNSENSNIVKGLHEILTEANQE  524


 Score = 46.3 bits (108),  Expect = 9e-04, Method: Composition-based stats.
 Identities = 27/137 (20%), Positives = 45/137 (33%), Gaps = 23/137 (17%)

Query  17   GKNIIIWLPTGAGKT--RAAAYVAKRHLETVDGAK---------------VVVLVNRVHL  59
            G++++    TG+GKT       V     +T    +                V++     L
Sbjct  179  GRDLMACAQTGSGKTGGFL-FPVLSESFKTGPSPQPESQGSFYQRKAYPTAVIMAPTREL  237

Query  60   VTQHGEEFRRMLDGRWTVT-TLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEE  118
             TQ  +E ++     W     + G          + R  DLL+ T   L   L    E  
Sbjct  238  ATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREIERGCDLLVATPGRLNDLL----ERG  293

Query  119  HVELTVFSLIVVDECHH  135
             + L     +V+DE   
Sbjct  294  KISLANVKYLVLDEADR  310


>sp|A6ZP47|DED1_YEAS7 ATP-dependent RNA helicase DED1 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=DED1 PE=3 SV=1
Length=604

 Score = 141 bits (356),  Expect = 3e-34, Method: Composition-based stats.
 Identities = 66/331 (20%), Positives = 110/331 (33%), Gaps = 53/331 (16%)

Query  211  SQQPCKQYNLCHRR------SQDPFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQV  262
            S QP  Q +   R+         P  +L  ++ D+         +     +G      Q+
Sbjct  210  SPQPESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQL  269

Query  263  VKLSEAAALAGLQEQRVYALHLR-----RYNDALLIHDTVRAVDALAALQDFYHREHVTK  317
             ++     L      R+  L  R          L++ +  R +D     +          
Sbjct  270  REIERGCDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDM--GFEPQIRHIVEDC  327

Query  318  TQILCAERRLLALFDDRKNELAHLA-----------------THGPENPKL-----EMLE  355
                  ER+ L        ++ HLA                 T      K+     +  +
Sbjct  328  DMTPVGERQTLMFSATFPADIQHLARDFLSDYIFLSVGRVGSTSENITQKVLYVENQDKK  387

Query  356  KILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHM  415
              L    S+S     +IF  T++ A  L  +L  Q      + RA  + G          
Sbjct  388  SALLDLLSASTDGLTLIFVETKRMADQLTDFLIMQ------NFRATAIHG--------DR  433

Query  416  TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA  474
            TQ +++  +  F+ G   LLVAT+VA  GLDIP+   V+ Y L ++    V   GR  RA
Sbjct  434  TQSERERALAAFRSGAATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRA  493

Query  475  DQSVYAF-VATEGSRELKRELINEALETLME  504
              +  A       +  + + L     E   E
Sbjct  494  GNTGLATAFFNSENSNIVKGLHEILTEANQE  524


 Score = 46.3 bits (108),  Expect = 9e-04, Method: Composition-based stats.
 Identities = 27/137 (20%), Positives = 45/137 (33%), Gaps = 23/137 (17%)

Query  17   GKNIIIWLPTGAGKT--RAAAYVAKRHLETVDGAK---------------VVVLVNRVHL  59
            G++++    TG+GKT       V     +T    +                V++     L
Sbjct  179  GRDLMACAQTGSGKTGGFL-FPVLSESFKTGPSPQPESQGSFYQRKAYPTAVIMAPTREL  237

Query  60   VTQHGEEFRRMLDGRWTVT-TLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEE  118
             TQ  +E ++     W     + G          + R  DLL+ T   L   L    E  
Sbjct  238  ATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREIERGCDLLVATPGRLNDLL----ERG  293

Query  119  HVELTVFSLIVVDECHH  135
             + L     +V+DE   
Sbjct  294  KISLANVKYLVLDEADR  310


>sp|A5E0U9|DBP8_LODEL ATP-dependent RNA helicase DBP8 OS=Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=DBP8 PE=3 SV=1
Length=444

 Score = 139 bits (350),  Expect = 3e-34, Method: Composition-based stats.
 Identities = 65/394 (16%), Positives = 139/394 (35%), Gaps = 44/394 (11%)

Query  163  VLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCH  222
            + GL  +P    A ++      +  L  N+    ++  ++   Q  E  ++P        
Sbjct  72   IFGLILTPTRELALQIAEQFAALGAL-MNIKVCVVVGGEDFVKQTLELQKKPHFVIATPG  130

Query  223  RRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYAL  282
            R +        + +         + + + +  +  +   + +       +  ++  ++  
Sbjct  131  RLADHILNSGEETVSGLRRIKYLVLDEADRLLSNSFGSDLQRCFTILPPSEKRQTLLFTA  190

Query  283  HLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLA  342
             +     AL          A   L  F H+      QI   +             L+ + 
Sbjct  191  TVTDAVKALKDKP-----RAEGKLPVFLHQVDAGVDQIAIPKT------------LSTMY  233

Query  343  THGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL  402
               P   K   L  IL+           ++F     +A  L   L++ +           
Sbjct  234  VFVPSYVKEAYLTSILK--LPKYEESTAVVFVNRTMTAEVLRRMLRKLE-----------  280

Query  403  LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE  462
                  +S  + M Q ++   + +F+ G   +L+AT VA  GLDIP   +VV + +  + 
Sbjct  281  ---FKVASLHSEMPQTERTNSLHRFKAGAARILIATDVASRGLDIPTVELVVNFDIPADP  337

Query  463  ISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK  521
               +   GR ARA +   A     G ++++R      +E++ E+    ++ ++  +    
Sbjct  338  DDFIHRVGRTARAGRKGDAISII-GEKDIER------IESIEERINKKMELLEGVDDDKV  390

Query  522  IRD-LQQAALTKRAAQ-AAQRENQRQQFPVEHVQ  553
            I D LQ+A   KR A     +E+  ++  V   +
Sbjct  391  INDSLQKATTAKREAMLDMDKESFGERRKVNKKK  424


 Score = 55.2 bits (131),  Expect = 1e-06, Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 57/169 (34%), Gaps = 9/169 (5%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKV-VVLVNRVHLVTQ---HGEEFRRM  70
            L+G++ I    TG+GKT A A +              ++L     L  Q          +
Sbjct  38   LKGRDCIGGAKTGSGKTIAFAALMLTQWSQDPFGIFGLILTPTRELALQIAEQFAALGAL  97

Query  71   LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV  130
            ++ +  V     D   +     L +    +I T   L   + +  EE    L     +V+
Sbjct  98   MNIKVCVVVGGEDFVKQTL--ELQKKPHFVIATPGRLADHILNSGEETVSGLRRIKYLVL  155

Query  131  DECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLD  179
            DE      ++  + +   +  L     +   Q L  TA+      +  D
Sbjct  156  DEADRLLSNSFGSDLQRCFTILPPSEKR---QTLLFTATVTDAVKALKD  201


>sp|A5DQS0|DED1_PICGU ATP-dependent RNA helicase DED1 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DED1 PE=3 
SV=3
Length=637

 Score = 142 bits (357),  Expect = 3e-34, Method: Composition-based stats.
 Identities = 43/169 (25%), Positives = 74/169 (44%), Gaps = 16/169 (9%)

Query  355  EKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH  414
            + +L    S++++   IIFT T++ A +L  +L  Q              G   ++    
Sbjct  414  KSVLLDLLSANDNGLTIIFTETKRMADNLADFLYDQ--------------GFPATAIHGD  459

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR  473
             +Q ++++ +  F+ GT  +LVAT+VA  GLDIP+ + VV Y L  +    V   GR  R
Sbjct  460  RSQYEREKALAAFKSGTAPILVATAVAARGLDIPNVSHVVNYDLPGDIDDYVHRIGRTGR  519

Query  474  ADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK  521
            A     A       +R + + +I    E   E      +   +  Y +K
Sbjct  520  AGNVGIATAFFNRNNRNVVKGMIELLSEANQEVPDFLQKISREGSYGSK  568


 Score = 50.6 bits (119),  Expect = 5e-05, Method: Composition-based stats.
 Identities = 30/137 (22%), Positives = 52/137 (38%), Gaps = 21/137 (15%)

Query  16   EGKNIIIWLPTGAGKT--RAAAYVAKRHLET----------VDGAKV----VVLVNRVHL  59
             G++++    TG+GKT       +++ ++                KV    +V+     L
Sbjct  205  SGRDLMACAQTGSGKTGGFLFPVLSESYMNGPDAVPESQGAFSSHKVHPTALVMAPTREL  264

Query  60   VTQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEE  118
            V+Q  EE ++     W     + G         +L R  DLL+ T   L+  L    E  
Sbjct  265  VSQIFEEAKKFSYRSWVRPCVVYGGADIGTQIRNLDRGCDLLVATPGRLKDLL----ERG  320

Query  119  HVELTVFSLIVVDECHH  135
             V L+    +V+DE   
Sbjct  321  RVSLSNIKYLVLDEADR  337


>sp|Q9M2F9|RH52_ARATH DEAD-box ATP-dependent RNA helicase 52 OS=Arabidopsis 
thaliana OX=3702 GN=RH52 PE=1 SV=1
Length=646

 Score = 141 bits (356),  Expect = 4e-34, Method: Composition-based stats.
 Identities = 70/342 (20%), Positives = 118/342 (35%), Gaps = 69/342 (20%)

Query  209  EHSQQPCKQYNLCHRRSQDPFGDLLK---KLMDQIHDHLEMP------ELSRKFGTQMYE  259
            +H ++P         R   P   +L    +L  QIHD           ++   +G     
Sbjct  212  QHIERPR------GVRGVYPLAVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVN  265

Query  260  QQVVKLSEAAALAGLQEQRVYALHLR-----RYNDALLIHDTVRAVDALAALQDFYHREH  314
            QQ+ +L     +      R+  L  R     +    L + +  R +D     Q    R+ 
Sbjct  266  QQIRELERGVDILVATPGRLNDLLERGRVSLQMVRFLALDEADRMLDMGFEPQ---IRKI  322

Query  315  VTKTQILCAERRLLALFDD-RKNELAHLAT--------------------------HGPE  347
            V +  +     R   LF      E+  LA+                             +
Sbjct  323  VQQMDMPPPGVRQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEFVHD  382

Query  348  NPKLEMLEKILQRQFSSSNSPR---GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI  404
            + K   L  +L  Q  + N  +    ++F  T++ A SL  WL               + 
Sbjct  383  SDKRSHLMDLLHAQRENGNQGKQALTLVFVETKKGADSLENWL--------------CIN  428

Query  405  GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
            G   ++     +Q++++  ++ F+ G   +LVAT VA  GLDIPH   VV + L  +   
Sbjct  429  GFPATTIHGDRSQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDD  488

Query  465  MVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLME  504
             V   GR  RA  S  A     + +  + + L     E   E
Sbjct  489  YVHRIGRTGRAGNSGLATAFFNDNNTTMAKPLAELMQEANQE  530


 Score = 48.6 bits (114),  Expect = 2e-04, Method: Composition-based stats.
 Identities = 31/141 (22%), Positives = 49/141 (35%), Gaps = 16/141 (11%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT------RAAAYVAKRHLETVDGAK-----VVVLVN  55
            Q   I     G++++    TG+GKT        +  +  +H+E   G +      V+L  
Sbjct  173  QRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSP  232

Query  56   RVHLVTQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP  114
               L  Q  +E R+        V    G          L R  D+L+ T   L   L   
Sbjct  233  TRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQIRELERGVDILVATPGRLNDLL---  289

Query  115  EEEEHVELTVFSLIVVDECHH  135
             E   V L +   + +DE   
Sbjct  290  -ERGRVSLQMVRFLALDEADR  309


>sp|A3LQ01|DED1_PICST ATP-dependent RNA helicase DED1 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=DED1 PE=3 SV=3
Length=647

 Score = 141 bits (355),  Expect = 6e-34, Method: Composition-based stats.
 Identities = 63/309 (20%), Positives = 112/309 (36%), Gaps = 49/309 (16%)

Query  228  PFGDLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR  285
            P  +L+ ++ D+         +     +G     QQ+  L +   L      R+  L  R
Sbjct  259  PTRELVSQIYDEAKKFAYRSWVKPAVVYGGADIGQQIRNLDKGCDLLVATPGRLKDLLER  318

Query  286  RYND-----ALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKN  336
                      L++ +  R +D     Q    R  V +  +   + R   +F         
Sbjct  319  GRVSLANIKYLVLDEADRMLDMGFEPQ---IRHIVQECDMPDVQDRQTLMFSATFPTDIQ  375

Query  337  ELAHL--------------ATHGPENPKL-----EMLEKILQRQFSSSNSPRGIIFTRTR  377
             LA                +T      K+     E  + +L    S+ ++   IIFT T+
Sbjct  376  MLARDFLKDYIFLSVGRVGSTSENITQKILYVEDEEKKSVLLDLLSAGDAGLTIIFTETK  435

Query  378  QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA  437
            + A +L  +L  Q              G   ++     +Q ++++ +  F+ G   +LVA
Sbjct  436  RMADNLADFLYDQ--------------GFPATAIHGDRSQYEREKALAAFKSGAAPILVA  481

Query  438  TSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELI  495
            T+VA  GLDIP+   V+ Y L ++    V   GR  RA     A       ++ + + LI
Sbjct  482  TAVAARGLDIPNVAHVINYDLPSDIDDYVHRIGRTGRAGNVGIATAFFNRNNKNVVKGLI  541

Query  496  NEALETLME  504
            +   E   E
Sbjct  542  DLLSEANQE  550


 Score = 49.8 bits (117),  Expect = 6e-05, Method: Composition-based stats.
 Identities = 27/136 (20%), Positives = 51/136 (38%), Gaps = 21/136 (15%)

Query  17   GKNIIIWLPTGAGKT--RAAAYVAKRHLET----------VDGAK----VVVLVNRVHLV  60
            G++++    TG+GKT       +++ ++                K    ++V+     LV
Sbjct  205  GRDLMACAQTGSGKTGGFLFPVLSESYINGPAPIAESTGAFSSHKVHPTILVMAPTRELV  264

Query  61   TQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
            +Q  +E ++     W     + G         +L +  DLL+ T   L+  L    E   
Sbjct  265  SQIYDEAKKFAYRSWVKPAVVYGGADIGQQIRNLDKGCDLLVATPGRLKDLL----ERGR  320

Query  120  VELTVFSLIVVDECHH  135
            V L     +V+DE   
Sbjct  321  VSLANIKYLVLDEADR  336


>sp|Q9VHP0|DDX3_DROME ATP-dependent RNA helicase bel OS=Drosophila 
melanogaster OX=7227 GN=bel PE=1 SV=1
Length=798

 Score = 141 bits (355),  Expect = 1e-33, Method: Composition-based stats.
 Identities = 62/316 (20%), Positives = 108/316 (34%), Gaps = 56/316 (18%)

Query  228  PFGDLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR  285
            P  +L  ++ ++         +     +G     +Q+ +L     L      R+  +  R
Sbjct  386  PTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVATPGRLEDMITR  445

Query  286  RYNDA-----LLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFD----DRKN  336
                      L++ +  R +D     Q    R  V +  +    +R   +F      +  
Sbjct  446  GKVGLENIRFLVLDEADRMLDMGFEPQ---IRRIVEQLNMPPTGQRQTLMFSATFPKQIQ  502

Query  337  ELAHLATHGP-----------------------ENPKLEMLEKILQRQF---SSSNSPRG  370
            ELA                              E  K   L  +L         +     
Sbjct  503  ELASDFLSNYIFLAVGRVGSTSENITQTILWVYEPDKRSYLLDLLSSIRDGPEYTKDSLT  562

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            +IF  T++ A SL  +L Q                   +S     TQ++++E ++ F+ G
Sbjct  563  LIFVETKKGADSLEEFLYQCN--------------HPVTSIHGDRTQKEREEALRCFRSG  608

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSR  488
               +LVAT+VA  GLDIPH   V+ + L ++    V   GR  R      A     E +R
Sbjct  609  DCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNEKNR  668

Query  489  ELKRELINEALETLME  504
             +  +L+   +ET  E
Sbjct  669  NICSDLLELLIETKQE  684


 Score = 53.3 bits (126),  Expect = 6e-06, Method: Composition-based stats.
 Identities = 57/305 (19%), Positives = 97/305 (32%), Gaps = 43/305 (14%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYV-----------------AKRHLETVDGAK  49
            Q   I   + G++++    TG+GKT AA  V                  +++        
Sbjct  322  QKHAIPIIINGRDLMACAQTGSGKT-AAFLVPILNQMYELGHVPPPQSTRQYSRRKQYPL  380

Query  50   VVVLVNRVHLVTQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQ  108
             +VL     L TQ  EE ++           L G          L R   L++ T   L+
Sbjct  381  GLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVATPGRLE  440

Query  109  MALTSPEEEEHVELTVFSLIVVDECHH---THKDTVYNVIMSQYLELKLQRAQPLPQVLG  165
              +T  +    V L     +V+DE         +     I+ Q       + Q     L 
Sbjct  441  DMITRGK----VGLENIRFLVLDEADRMLDMGFEPQIRRIVEQLNMPPTGQRQT----LM  492

Query  166  LTAS-PGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRR  224
             +A+ P        D   N++      L    + S      Q      +P K+  L    
Sbjct  493  FSATFPKQIQELASDFLSNYIF-----LAVGRVGSTSENITQTILWVYEPDKRSYLLDLL  547

Query  225  SQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEA-AALAGLQEQRVYALH  283
            S    G    K      D L +  +  K G    E+ + + +    ++ G + Q+     
Sbjct  548  SSIRDGPEYTK------DSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEA  601

Query  284  LRRYN  288
            LR + 
Sbjct  602  LRCFR  606


>sp|Q1DHB2|PRP5_COCIM Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Coccidioides immitis (strain RS) OX=246410 GN=PRP5 
PE=3 SV=1
Length=1197

 Score = 141 bits (356),  Expect = 1e-33, Method: Composition-based stats.
 Identities = 68/368 (18%), Positives = 128/368 (35%), Gaps = 47/368 (13%)

Query  212  QQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAA  269
            Q+P +           P  +L  ++  +    L+   L     +G    + Q+ +L   A
Sbjct  624  QRPLENMEGPVGLIMTPTRELATQIHKECKPFLKALNLRAVCAYGGAPIKDQIAELKRGA  683

Query  270  ALAGLQEQRVYAL--------HLRRYNDALLIHDTVRAVD---------ALAALQDFYH-  311
             +      R+  L           R    +++ +  R  D          ++ ++     
Sbjct  684  EIIVCTPGRMIDLLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIISNIRPSRQT  743

Query  312  ----------REHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQ  361
                       E + +  +      ++        E+  +    PEN K   L ++L   
Sbjct  744  VLFSATFPRNMEALARKTLTKPVEIIVGGRSVVAQEITQIVEVRPENTKFVRLLELLGNL  803

Query  362  FSSSN--SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRD  419
            +S  N    R +IF   +++A  LL  L ++              G    S      Q D
Sbjct  804  YSDDNNEDARALIFVDRQEAADGLLRDLMRK--------------GYPCMSIHGGKDQVD  849

Query  420  QQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSV  478
            +   I  F+ G   +L+ATSVA  GLD+    +V+ Y    +    V   GR  RA  + 
Sbjct  850  RDSTIDDFKAGIFPVLIATSVAARGLDVKQLKLVINYDAPNHLEDYVHRAGRTGRAGNTG  909

Query  479  YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA  538
             A       +E     I +AL+   +    AVQKM  +  +      ++A+ +    +  
Sbjct  910  TAVTFLTEEQERYSVDIAKALKQSGQSVPEAVQKMVDSFLEKVKSGKEKASASGFGGKGL  969

Query  539  QRENQRQQ  546
            +R +Q + 
Sbjct  970  ERLDQERD  977


 Score = 59.8 bits (143),  Expect = 8e-08, Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 54/138 (39%), Gaps = 12/138 (9%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYV-AKRH------LETVDGAKVVVLVNRVHL  59
            Q + I   + G+++I    TG+GKT  A  +   RH      LE ++G   +++     L
Sbjct  586  QSQAIPAIMSGRDVIGVAKTGSGKT-IAFLLPMFRHIKDQRPLENMEGPVGLIMTPTREL  644

Query  60   VTQHGEEFRRMLDG--RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE  117
             TQ  +E +  L       V    G          L R  ++++CT   +   L +    
Sbjct  645  ATQIHKECKPFLKALNLRAVCAYGGAPIKDQI-AELKRGAEIIVCTPGRMIDLLAANSGR  703

Query  118  EHVELTVFSLIVVDECHH  135
                L   + +V+DE   
Sbjct  704  -VTNLRRVTYVVLDEADR  720


>sp|Q6Z4K6|RH52B_ORYSJ DEAD-box ATP-dependent RNA helicase 52B 
OS=Oryza sativa subsp. japonica OX=39947 GN=PL10B PE=2 SV=1
Length=638

 Score = 140 bits (352),  Expect = 1e-33, Method: Composition-based stats.
 Identities = 62/294 (21%), Positives = 98/294 (33%), Gaps = 54/294 (18%)

Query  248  ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND-----ALLIHDTVRAVDA  302
            ++   +G     QQ+ +L     +      R+  L  R          L + +  R +D 
Sbjct  277  KVVVAYGGAPITQQLRELERGVEILVATPGRLMDLLERARVSLQMIKYLALDEADRMLDM  336

Query  303  LAALQDFYHREHVTKTQILCAERRLLALFDD-----------------------RKNELA  339
                Q    R+ V +  +     R   LF                         R     
Sbjct  337  GFEPQ---IRKIVEQMDMPPRGERQTMLFSATFPKEIQRMASDFLADYIFLAVGRVGSST  393

Query  340  HLATHGPENP----KLEMLEKILQRQFSSSNSPR---GIIFTRTRQSAHSLLLWLQQQQG  392
             L     E      K   L  +L  Q ++    +    ++F  T++ A +L  WL     
Sbjct  394  DLIVQRVEFVLDADKRSYLMDLLHAQRANGTHGKQALTLVFVETKRGADALENWLYNN--  451

Query  393  LQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNV  452
                        G   +S     TQ++++  ++ F+ G   +LVAT VA  GLDIPH   
Sbjct  452  ------------GFPATSIHGDRTQQEREYALRSFKSGATPILVATDVAARGLDIPHVAH  499

Query  453  VVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLME  504
            V+ + L  +    V   GR  RA +S  A     E +  L R L     E   E
Sbjct  500  VINFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNESNTPLARPLSELMQEANQE  553


 Score = 49.0 bits (115),  Expect = 1e-04, Method: Composition-based stats.
 Identities = 30/144 (21%), Positives = 52/144 (36%), Gaps = 22/144 (15%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAY---VAKRHLETVDGAK----------VVVL  53
            Q   I  ++ G++++    TG+GKT  AA+   +    + +    +           ++L
Sbjct  196  QRYAIPISIAGRDLMACAQTGSGKT--AAFCFPIISGIMRSRPPPRSRGSRTAYPLALIL  253

Query  54   VNRVHLVTQHGEEFRRML--DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMAL  111
                 L  Q  EE R+     G   V    G    +     L R  ++L+ T   L   L
Sbjct  254  SPTRELSVQIHEEARKFAYQTGVKVVVAYGGAPITQQLR-ELERGVEILVATPGRLMDLL  312

Query  112  TSPEEEEHVELTVFSLIVVDECHH  135
                E   V L +   + +DE   
Sbjct  313  ----ERARVSLQMIKYLALDEADR  332


>sp|P44586|DEAD_HAEIN ATP-dependent RNA helicase DeaD OS=Haemophilus 
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) 
OX=71421 GN=deaD PE=3 SV=1
Length=613

 Score = 139 bits (351),  Expect = 1e-33, Method: Composition-based stats.
 Identities = 66/323 (20%), Positives = 129/323 (40%), Gaps = 44/323 (14%)

Query  237  MDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRY---------  287
             +    + +   +   +G Q Y+ Q+  L + A +      R+   H+RR          
Sbjct  93   CELFVKYAQGTRIVTLYGGQRYDIQLRALKQGAQVVVGTPGRILD-HIRRGTLNLSELRF  151

Query  288  -----NDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLA  342
                  D +L    +  V+ + A     H+  +    +    RR+   F +   E+  + 
Sbjct  152  IVLDEADEMLRMGFIDDVETVMAELPENHQTALFSATMPEPIRRITKRFMNDPQEVK-IK  210

Query  343  THGPENPKLE---------MLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGL  393
             +    P ++            + L R     +    IIF RT+     +   L++    
Sbjct  211  VNNENAPDIDQSCWYVHGVRKNEALLRFLEVEDFDAAIIFARTKTGTLDITELLEKN---  267

Query  394  QTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV  453
                       G  +++ +  MTQ+ +++ + + ++G+L+++VAT VA  G+DI   ++V
Sbjct  268  -----------GFRSAALNGDMTQQLREQTLDRLRNGSLDIVVATDVAARGIDIERISLV  316

Query  454  VRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQK  512
            V Y +  +  S V   GR  RA +S  A +  E     +R L N  +E LM++ +  V+ 
Sbjct  317  VNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRE--RRLLRN--IEHLMKKGINEVEL  372

Query  513  MDQAEYQAKIRDLQQAALTKRAA  535
             +    Q   R    A +TK+  
Sbjct  373  PNHLVLQECRRKKFVAKITKQLE  395


 Score = 52.5 bits (124),  Expect = 9e-06, Method: Composition-based stats.
 Identities = 23/123 (19%), Positives = 45/123 (37%), Gaps = 9/123 (7%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGEEFR---RM  70
            L G +++    TG+GKT A A      ++  +   +++V+     L  Q  +      + 
Sbjct  40   LNGNDVLGMAQTGSGKTAAFALPLLAQIDPSEKHPQMLVMAPTRELAIQVADACELFVKY  99

Query  71   LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV  130
              G   VT   G          L +   +++ T   +   +        + L+    IV+
Sbjct  100  AQGTRIVTLYGGQRYDIQLR-ALKQGAQVVVGTPGRILDHI----RRGTLNLSELRFIVL  154

Query  131  DEC  133
            DE 
Sbjct  155  DEA  157


>sp|P19109|DDX17_DROME ATP-dependent RNA helicase p62 OS=Drosophila 
melanogaster OX=7227 GN=Rm62 PE=1 SV=3
Length=719

 Score = 140 bits (353),  Expect = 2e-33, Method: Composition-based stats.
 Identities = 41/190 (22%), Positives = 81/190 (43%), Gaps = 17/190 (9%)

Query  333  DRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSP-RGIIFTRTRQSAHSLLLWLQQQQ  391
               + +  +     E  K E L+ +L   + +S SP + IIF  T++   +L+ +++   
Sbjct  495  SANHNIRQVVDVCDEFSKEEKLKTLLSDIYDTSESPGKIIIFVETKRRVDNLVRFIR---  551

Query  392  GLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN  451
               +  +R   + G          +Q ++  V+++F+ G  N+LVAT VA  GLD+    
Sbjct  552  ---SFGVRCGAIHG--------DKSQSERDFVLREFRSGKSNILVATDVAARGLDVDGIK  600

Query  452  VVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAA  509
             V+ +    N    +   GR  R++    +F   T+ + +  + L++   E   E   A 
Sbjct  601  YVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQAKALVDVLREANQEINPAL  660

Query  510  VQKMDQAEYQ  519
                  + Y 
Sbjct  661  ENLARNSRYD  670


 Score = 50.6 bits (119),  Expect = 4e-05, Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 46/130 (35%), Gaps = 13/130 (10%)

Query  14   ALEGKNIIIWLPTGAGKTRAAAYVAKRH------LETVDGAKVVVLVNRVHLVTQHGEEF  67
            A+ G N +    TG+GKT      A  H      L+  DG   +VL     L  Q  ++ 
Sbjct  315  AMSGSNFVGIAKTGSGKTLGYILPAIVHINNQQPLQRGDGPIALVLAPTREL-AQQIQQV  373

Query  68   RRMLDGRWTV--TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF  125
                     V  T + G          L R  +++I T   L   L++        L   
Sbjct  374  ATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGCEIVIATPGRLIDFLSA----GSTNLKRC  429

Query  126  SLIVVDECHH  135
            + +V+DE   
Sbjct  430  TYLVLDEADR  439


>sp|Q89AF9|DEAD_BUCBP ATP-dependent RNA helicase DeaD OS=Buchnera 
aphidicola subsp. Baizongia pistaciae (strain Bp) OX=224915 
GN=deaD PE=3 SV=1
Length=602

 Score = 139 bits (349),  Expect = 2e-33, Method: Composition-based stats.
 Identities = 62/339 (18%), Positives = 128/339 (38%), Gaps = 42/339 (12%)

Query  207  LQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLS  266
            L  + +   +   +            + +        L    +   +G Q Y+ Q+  L 
Sbjct  64   LLHNIKLDVRVPQILVLTPTRELAVQVAEAFSNFSKKLIGVHVLALYGGQRYDLQLKSLR  123

Query  267  EAAALAGLQEQRVYALHLRR----YNDALLIHDTVRAVDALAALQDF---------YHRE  313
            +   +      R+     RR     N   L+ D    +  +  ++D           H+ 
Sbjct  124  KGPQIIVGTPGRLLDHLKRRTLSLSNLHSLVLDEADEMLRMGFIEDVETIMTEIPDRHQT  183

Query  314  HVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLE--------MLEKILQRQFSSS  365
             +    +  A RR+   F     E+  + ++    P ++             L R   + 
Sbjct  184  ALFSATMPEAIRRISRRFMKNPKEI-RIQSNITTRPDIQQSYWMVYGKKTDALIRFLEAE  242

Query  366  NSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQ  425
            +    IIF RT+ +   +   L++               G  +++ +  M Q  +++ ++
Sbjct  243  DFSATIIFVRTKNATLEVSEVLERY--------------GYNSAALNGDMNQSLREQTLE  288

Query  426  KFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVAT  484
            K +DG L++L+AT VA  GLD+   + V+ Y +  +  S V   GR  RA +   A +  
Sbjct  289  KLKDGRLDILIATDVAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRKGKALLFV  348

Query  485  EGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIR  523
            E     +R L N  +E  M  +++ V  + ++++ +K R
Sbjct  349  ENRE--RRLLRN--IERAMNISISEV-NLPKSDFLSKRR  382


 Score = 57.5 bits (137),  Expect = 3e-07, Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 47/122 (39%), Gaps = 7/122 (6%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRHLET-VDGAKVVVLVNRVHLVTQHGEEFRRMLDG  73
            ++GK+++    TG+GKT A A     +++  V   +++VL     L  Q  E F      
Sbjct  41   IKGKDVLGMAQTGSGKTAAFALPLLHNIKLDVRVPQILVLTPTRELAVQVAEAFSNFSKK  100

Query  74   --RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVD  131
                 V  L G          L +   +++ T   L   L        + L+    +V+D
Sbjct  101  LIGVHVLALYGGQRYDLQLKSLRKGPQIIVGTPGRLLDHLKRRT----LSLSNLHSLVLD  156

Query  132  EC  133
            E 
Sbjct  157  EA  158


>sp|Q5A4E2|DED1_CANAL ATP-dependent RNA helicase DED1 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DED1 
PE=3 SV=1
Length=672

 Score = 139 bits (351),  Expect = 3e-33, Method: Composition-based stats.
 Identities = 57/309 (18%), Positives = 111/309 (36%), Gaps = 49/309 (16%)

Query  228  PFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR  285
            P  +L+ ++ ++         +     +G     QQ+  +     L      R+  L  R
Sbjct  277  PTRELVSQIYEESKKFSYRSWVRACVVYGGADIGQQMRNMDRGCDLLVATPGRLKDLLDR  336

Query  286  RYND-----ALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH  340
                      L++ +  R +D     Q  Y    V +  +   + R   +F         
Sbjct  337  GKVSLANIRYLVLDEADRMLDMGFEPQIRYI---VEECDMPAVKDRQTLMFSATFPRDIQ  393

Query  341  L------------------ATHGPENPKLEMLEK-----ILQRQFSSSNSPRGIIFTRTR  377
            +                  +T      K+  +E      ++    S++ +   I+FT T+
Sbjct  394  MLARDFLKDYVFLSVGRVGSTSENITQKILYVEDDEKKSVILDLLSANENGLTIVFTETK  453

Query  378  QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA  437
            + A +L  +L  Q              G   ++     +Q ++++ +  F++G   +LVA
Sbjct  454  RMADNLADYLYDQ--------------GFPATAIHGDRSQYEREKALAAFKNGAAPILVA  499

Query  438  TSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELI  495
            T+VA  GLDIP+ + V+ Y L ++    V   GR  RA     A       ++ + + LI
Sbjct  500  TAVAARGLDIPNVSHVINYDLPSDIDDYVHRIGRTGRAGNVGIATAFFNRNNKNVVKGLI  559

Query  496  NEALETLME  504
                E   E
Sbjct  560  ELLSEANQE  568


 Score = 50.2 bits (118),  Expect = 5e-05, Method: Composition-based stats.
 Identities = 28/151 (19%), Positives = 57/151 (38%), Gaps = 24/151 (16%)

Query  2    ELRSYQWEVIMPALEGKNIIIWLPTGAGKT--RAAAYVAKRHLET----------VDGAK  49
             ++ Y   ++     G++++    TG+GKT       +++ +++               K
Sbjct  211  PVQKYSVPIVAA---GRDLMACAQTGSGKTGGFLFPVLSESYMKGPAPVPESNGAFSSHK  267

Query  50   ----VVVLVNRVHLVTQHGEEFRRMLDGRWTVT-TLSGDMGPRAGFGHLARCHDLLICTA  104
                ++V+     LV+Q  EE ++     W     + G         ++ R  DLL+ T 
Sbjct  268  VYPTILVMAPTRELVSQIYEESKKFSYRSWVRACVVYGGADIGQQMRNMDRGCDLLVATP  327

Query  105  ELLQMALTSPEEEEHVELTVFSLIVVDECHH  135
              L+  L    +   V L     +V+DE   
Sbjct  328  GRLKDLL----DRGKVSLANIRYLVLDEADR  354


>sp|Q0CIQ3|RRP3_ASPTN ATP-dependent rRNA helicase rrp3 OS=Aspergillus 
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=rrp3 
PE=3 SV=2
Length=445

 Score = 136 bits (343),  Expect = 3e-33, Method: Composition-based stats.
 Identities = 80/414 (19%), Positives = 135/414 (33%), Gaps = 52/414 (13%)

Query  164  LGLTA-SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLC-  221
            LG TA +P       +      ++ L     T    +     P LQ    +P + ++L  
Sbjct  46   LGYTAPTPIQERCIPIALEGRDLIGLAE---TGSGKTAAFVLPMLQALMDKPQQFHSLIL  102

Query  222  --HRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRV  279
               R         ++ L  +I     +       G      Q + L +   +      R+
Sbjct  103  APTRELAQQIAHTVEALGARISVRCTLL-----IGGMDMISQAIALGKKPHVIVATPGRL  157

Query  280  YALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERR---LLALFDDRKN  336
               HL       L       +D    L D      + K   L  +R+     A    +  
Sbjct  158  LD-HLENTKGFSLRTLKYLVLDEADRLLDLDFGPILDKLLRLLPKRKTYLFSATMSSKVE  216

Query  337  ELAHLATHGPE----NPKLEMLEKILQRQFSSSNSPR---------------GIIFTRTR  377
             L   +   P     + K +   K+LQ      +  +               GIIFTRT 
Sbjct  217  SLQRASLSDPVRVSVSTKNQTASKLLQSYLFIPHKFKDFYLVYLLNERAGQMGIIFTRTV  276

Query  378  QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA  437
                 L + L+               +G         ++Q  +   + KF+  + NLL+A
Sbjct  277  HETQRLSIMLRN--------------LGFPAIPIHGQLSQSARLASLNKFRARSRNLLIA  322

Query  438  TSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELIN  496
            T VA  GLDIP  + V+ Y L  +  + +   GR ARA +S  AF             I 
Sbjct  323  TDVAARGLDIPAVDYVLNYDLPQDSKTYIHRVGRTARAGKSGIAFSFVTQYEVELWLRIE  382

Query  497  EALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVE  550
            +AL   +E+     +K +   +  ++ D Q+ A         +    R     +
Sbjct  383  DALGKKVEEYKP--EKDEVMIFAERVNDAQRVAALTMRDMQDKDNKGRGPRNRK  434


 Score = 71.8 bits (174),  Expect = 6e-12, Method: Composition-based stats.
 Identities = 65/379 (17%), Positives = 118/379 (31%), Gaps = 31/379 (8%)

Query  14   ALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK-VVVLVNRVHLVTQHGEEFRRMLD  72
            ALEG+++I    TG+GKT A      + L         ++L     L  Q        L 
Sbjct  62   ALEGRDLIGLAETGSGKTAAFVLPMLQALMDKPQQFHSLILAPTREL-AQQIAHTVEALG  120

Query  73   GRWTV--TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV  130
             R +V  T L G M   +    L +   +++ T   L   L + +      L     +V+
Sbjct  121  ARISVRCTLLIGGMDMISQAIALGKKPHVIVATPGRLLDHLENTKG---FSLRTLKYLVL  177

Query  131  DECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCA  190
            DE      D  +  I+ + L L  +R   L      +A+  +   S    +++  +++  
Sbjct  178  DEADRLL-DLDFGPILDKLLRLLPKRKTYL-----FSATMSSKVESLQRASLSDPVRV--  229

Query  191  NLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELS  250
                      Q     LQ +   P K  +       +     +  +  +     +   + 
Sbjct  230  ----SVSTKNQTASKLLQSYLFIPHKFKDFYLVYLLNERAGQMGIIFTRTVHETQRLSIM  285

Query  251  RKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAAL---Q  307
             +           +LS++A LA L + R  + +L    D       + AVD +      Q
Sbjct  286  LRNLGFPAIPIHGQLSQSARLASLNKFRARSRNLLIATDVAARGLDIPAVDYVLNYDLPQ  345

Query  308  DFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNS  367
            D     H         +  +   F  +      L        K+E               
Sbjct  346  DSKTYIHRVGRTARAGKSGIAFSFVTQYEVELWLRIEDALGKKVEE---------YKPEK  396

Query  368  PRGIIFTRTRQSAHSLLLW  386
               +IF      A  +   
Sbjct  397  DEVMIFAERVNDAQRVAAL  415


>sp|Q62167|DDX3X_MOUSE ATP-dependent RNA helicase DDX3X OS=Mus 
musculus OX=10090 GN=Ddx3x PE=1 SV=3
Length=662

 Score = 138 bits (348),  Expect = 5e-33, Method: Composition-based stats.
 Identities = 59/283 (21%), Positives = 104/283 (37%), Gaps = 48/283 (17%)

Query  253  FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND-----ALLIHDTVRAVDALAALQ  307
            +G     QQ+  L     L      R+  +  R          L++ +  R +D     Q
Sbjct  301  YGGAEIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ  360

Query  308  DFYHREHVTKTQILCAERRLLALFDD-RKNELAHLA-----------------THGPENP  349
                R  V +  +     R   +F      E+  LA                 T      
Sbjct  361  ---IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQ  417

Query  350  KLEMLEKILQRQF------SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLL  403
            K+  +E+I +R F      ++      ++F  T++ A SL  +L  +             
Sbjct  418  KVVWVEEIDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE-------------  464

Query  404  IGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI  463
             G   +S     +QRD++E + +F+ G   +LVAT+VA  GLDI +   V+ + L ++  
Sbjct  465  -GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIE  523

Query  464  SMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLME  504
              V   GR  R      A     E +  + ++L++  +E   E
Sbjct  524  EYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQE  566


 Score = 47.5 bits (111),  Expect = 4e-04, Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 46/149 (31%), Gaps = 24/149 (16%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT---------RA-------AAYVAKRHLETVDGAK-  49
            Q   I    E ++++    TG+GKT         +        A    K +       + 
Sbjct  207  QKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYADGPGEALRAMKENGRYGRRKQY  266

Query  50   --VVVLVNRVHLVTQHGEEFRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAEL  106
               +VL     L  Q  EE R+     R     + G          L R   LL+ T   
Sbjct  267  PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGAEIGQQIRDLERGCHLLVATPGR  326

Query  107  LQMALTSPEEEEHVELTVFSLIVVDECHH  135
            L   +    E   + L     +V+DE   
Sbjct  327  LVDMM----ERGKIGLDFCKYLVLDEADR  351


>sp|Q2H1Q8|RRP3_CHAGB ATP-dependent rRNA helicase RRP3 OS=Chaetomium 
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / 
NBRC 6347 / NRRL 1970) OX=306901 GN=RRP3 PE=3 SV=1
Length=493

 Score = 136 bits (342),  Expect = 7e-33, Method: Composition-based stats.
 Identities = 75/364 (21%), Positives = 138/364 (38%), Gaps = 56/364 (15%)

Query  207  LQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLS  266
            L      P ++      +S +  G L+      I   L+M + +   G + +   VV  +
Sbjct  134  LFALVLAPTRELAAQIAQSFEALGSLISLRCALILGGLDMVQQAIALGKKPH---VVVAT  190

Query  267  EAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVD-ALAALQDFYHREHVTKTQILCAER  325
                L  L++ + ++L   RY   L++ +  R +D     + D   +        L  ER
Sbjct  191  PGRLLDHLEKTKGFSLRNLRY---LVMDEADRLLDMDFGPILDKILK-------FLPRER  240

Query  326  R---LLALFDDRKNELAHLATHGPE-----NPKLEMLEKILQRQFSSSNSPR--------  369
            R     A    +   L       P      + K + +  ++Q      ++ +        
Sbjct  241  RTFLFSATMSSKVESLQRACLRDPLKVSISSSKYQTVSTLVQNYVFIPHTHKDTYLIYLC  300

Query  370  -------GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE  422
                    IIFTRT      + + L+               +G G       ++Q  +  
Sbjct  301  NEFAGQTIIIFTRTVIETQRIAILLRT--------------LGMGAIPLHGGLSQSARLG  346

Query  423  VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF  481
             + KF+ G+ ++LVAT VA  GLDIP+ + V+   L  +  + V   GR ARA +S +A 
Sbjct  347  ALNKFRAGSRDILVATDVAARGLDIPNVDCVLNLDLPGDSKTYVHRVGRTARAGRSGHAI  406

Query  482  -VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR  540
               T+   EL   +       L E +   ++K D   ++ ++ + Q+ A T+  A    R
Sbjct  407  SFVTQYDLELWLRIEAALGTKLTEYS---LEKDDVMVFRPRVEEAQRIAKTEIKALMDDR  463

Query  541  ENQR  544
              + 
Sbjct  464  GKKG  467


 Score = 66.0 bits (159),  Expect = 6e-10, Method: Composition-based stats.
 Identities = 58/389 (15%), Positives = 118/389 (30%), Gaps = 37/389 (10%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT-RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q E I  AL+ ++II    TG+GKT   A  + +  L+       +VL     L  Q  +
Sbjct  92   QQESIPLALQDRDIIGLAETGSGKTGAFALPILQALLDKPQPLFALVLAPTRELAAQIAQ  151

Query  66   EFRRMLDGRW-TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
             F  +          + G +        L +   +++ T   L   L   +      L  
Sbjct  152  SFEALGSLISLRCALILGGLDMVQQAIALGKKPHVVVATPGRLLDHLEKTKG---FSLRN  208

Query  125  FSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINH  184
               +V+DE      D  +  I+ + L+   +      +    +A+  +   S     +  
Sbjct  209  LRYLVMDEADRLL-DMDFGPILDKILKFLPRER----RTFLFSATMSSKVESLQRACLRD  263

Query  185  VLQLCANLDTWCIMSPQNCCPQ--LQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHD  242
             L++  ++ +    +            H+ +      LC     + F      +  +   
Sbjct  264  PLKV--SISSSKYQTVSTLVQNYVFIPHTHKDTYLIYLC-----NEFAGQTIIIFTRTVI  316

Query  243  HLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDA  302
              +   +  +            LS++A L  L + R  +  +    D       +  VD 
Sbjct  317  ETQRIAILLRTLGMGAIPLHGGLSQSARLGALNKFRAGSRDILVATDVAARGLDIPNVDC  376

Query  303  LAAL------QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEK  356
            +  L      + + HR   T              F  + +    L        KL     
Sbjct  377  VLNLDLPGDSKTYVHRVGRTAR---AGRSGHAISFVTQYDLELWLRIEAALGTKL-----  428

Query  357  ILQRQFSSSNSPRGIIFTRTRQSAHSLLL  385
                ++S       ++F    + A  +  
Sbjct  429  ---TEYSLEKDD-VMVFRPRVEEAQRIAK  453


>sp|A5DZE6|DED1_LODEL ATP-dependent RNA helicase DED1 OS=Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=DED1 PE=3 SV=1
Length=664

 Score = 138 bits (347),  Expect = 7e-33, Method: Composition-based stats.
 Identities = 55/309 (18%), Positives = 111/309 (36%), Gaps = 49/309 (16%)

Query  228  PFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR  285
            P  +L+ ++ D+         +     +G      Q+ +L     L      R+  L  R
Sbjct  266  PTRELVSQIYDESKKFAYRSWVRPCVVYGGADIGNQIRQLDRGCDLLVATPGRLKDLLER  325

Query  286  RYND-----ALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH  340
                      L++ +  R +D     Q    R  V +  +   + R   +F         
Sbjct  326  GRVSLANIKYLVLDEADRMLDMGFEPQ---IRHIVQECDMPDVQDRQTLMFSATFPRDIQ  382

Query  341  L------------------ATHGPENPKL-----EMLEKILQRQFSSSNSPRGIIFTRTR  377
            +                  +T      K+     E  + ++    ++++    I+FT T+
Sbjct  383  MLARDFLKDYIFLSVGRVGSTSENITQKVLYVEDEEKKSVILDLLNANSEGLTIVFTETK  442

Query  378  QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA  437
            + A +L  +L  Q              G   ++     +Q ++++ +  F+ G   +LVA
Sbjct  443  RMADNLADFLYDQ--------------GFPATAIHGDRSQYEREKALAAFKSGQAPILVA  488

Query  438  TSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELI  495
            T+VA  GLDIP+ + V+ Y L ++    V   GR  RA     A       ++ + + ++
Sbjct  489  TAVAARGLDIPNVSHVINYDLPSDIDDYVHRIGRTGRAGNVGIATAFFNRNNKNIVKGML  548

Query  496  NEALETLME  504
            +   E   E
Sbjct  549  DLLTEANQE  557


 Score = 48.6 bits (114),  Expect = 2e-04, Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 55/151 (36%), Gaps = 24/151 (16%)

Query  2    ELRSYQWEVIMPALEGKNIIIWLPTGAGKT--RAAAYVAKRHLET----------VDGAK  49
             ++ Y   ++     G++++    TG+GKT       +++ ++                K
Sbjct  200  PVQKYSVPIVAA---GRDLMACAQTGSGKTGGFLFPVLSESYMNGPAPIPESTGAFSSHK  256

Query  50   ----VVVLVNRVHLVTQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTA  104
                ++V+     LV+Q  +E ++     W     + G          L R  DLL+ T 
Sbjct  257  VYPTILVMAPTRELVSQIYDESKKFAYRSWVRPCVVYGGADIGNQIRQLDRGCDLLVATP  316

Query  105  ELLQMALTSPEEEEHVELTVFSLIVVDECHH  135
              L+  L    E   V L     +V+DE   
Sbjct  317  GRLKDLL----ERGRVSLANIKYLVLDEADR  343


>sp|Q2U2J6|PRP5_ASPOR Pre-mRNA-processing ATP-dependent RNA helicase 
prp5 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) 
OX=510516 GN=prp5 PE=3 SV=1
Length=1186

 Score = 139 bits (350),  Expect = 8e-33, Method: Composition-based stats.
 Identities = 67/368 (18%), Positives = 125/368 (34%), Gaps = 47/368 (13%)

Query  212  QQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAA  269
            Q+P +           P  +L  ++       L+   L     +G    + Q+  L   A
Sbjct  619  QRPLENMEGPVGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIADLKRGA  678

Query  270  ALAGLQEQRVYAL--------HLRRYNDALLIHDTVRAVD---------ALAALQDFYH-  311
             +      R+  L           R    +++ +  R  D          LA ++     
Sbjct  679  EIIVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILANVRPDKQT  738

Query  312  ----------REHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQ  361
                       E + +  +      ++        E+  +     E+ K   L ++L   
Sbjct  739  VLFSATFPRNMEALARKTLNKPVEIVVGGRSVVAPEITQIVEVRSEDKKFIRLLELLGNL  798

Query  362  FS--SSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRD  419
            +S   +   R +IF   ++ A +LL  L ++              G    S      Q D
Sbjct  799  YSTDENEDARALIFVERQEGADTLLRELMRK--------------GYPCMSIHGGKDQID  844

Query  420  QQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSV  478
            +   I+ F+ G   +L+ATSVA  GLD+    +VV Y    +    V   GR  RA  + 
Sbjct  845  RDSTIEDFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTG  904

Query  479  YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA  538
             A       +E     I +AL+   +     VQKM  +  +      ++A+ +    +  
Sbjct  905  TAVTFLTEDQERYSVDIAKALKQSGQSVPEPVQKMVDSFLEKVKAGKEKASASGFGGKGL  964

Query  539  QRENQRQQ  546
            +R +Q + 
Sbjct  965  ERLDQERD  972


 Score = 60.6 bits (145),  Expect = 4e-08, Method: Composition-based stats.
 Identities = 54/327 (17%), Positives = 108/327 (33%), Gaps = 35/327 (11%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYV-AKRH------LETVDGAKVVVLVNRVHL  59
            Q + I   + G+++I    TG+GKT  A  +   RH      LE ++G   +++     L
Sbjct  581  QAQAIPAIMSGRDVIGVAKTGSGKT-IAFLIPMFRHIKDQRPLENMEGPVGLIMTPTREL  639

Query  60   VTQHGEEFRRMLDG--RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE  117
             TQ  ++ +  L       V    G          L R  ++++CT   +   L +    
Sbjct  640  ATQIHKDCKPFLKALNLRAVCAYGGAPIKDQI-ADLKRGAEIIVCTPGRMIDLLAANAGR  698

Query  118  EHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQ-----PLPQVLGLTASPGT  172
                L   + +V+DE            +M     ++  +         P+   + A    
Sbjct  699  -VTNLRRVTYVVLDEADRMFDMGFEPQVMKILANVRPDKQTVLFSATFPR--NMEALARK  755

Query  173  GGASKLDGAINHVLQLCANL-DTWCIMSPQNCCPQLQEH------SQQPCKQYNLCHRRS  225
                 ++  +     +   +     + S      +L E       + +      L     
Sbjct  756  TLNKPVEIVVGGRSVVAPEITQIVEVRSEDKKFIRLLELLGNLYSTDENEDARALIFVER  815

Query  226  QDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR  285
            Q+    LL++LM + +  + +     +       +      +A     L    V A  L 
Sbjct  816  QEGADTLLRELMRKGYPCMSIHGGKDQIDRDSTIE----DFKAGIFPVLIATSVAARGLD  871

Query  286  RYNDALLIHDTVRAVDALAALQDFYHR  312
                 L+++      DA   L+D+ HR
Sbjct  872  VKQLKLVVN-----YDAPNHLEDYVHR  893


>sp|A6R3L3|DED1_AJECN ATP-dependent RNA helicase DED1 OS=Ajellomyces 
capsulatus (strain NAm1 / WU24) OX=2059318 GN=DED1 PE=3 
SV=1
Length=694

 Score = 138 bits (347),  Expect = 8e-33, Method: Composition-based stats.
 Identities = 61/315 (19%), Positives = 111/315 (35%), Gaps = 59/315 (19%)

Query  228  PFGDLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR  285
            P  +L+ ++ D+         L  +  +G      Q+ +L +   +      R+  +  R
Sbjct  294  PTRELVSQIYDEARKFCYRTALHPRVVYGGAEMGNQLRQLDQGCNVLVATPGRLVDMMER  353

Query  286  -----RYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALF------DDR  334
                  +   L++ +  R +D     Q    R  V  + +     R   +F      D +
Sbjct  354  GRISLAHIQYLVLDEADRMLDMGFEPQ---IRRIVQGSDMPDKHMRQTLMFSATFPPDIQ  410

Query  335  KNELAHLATHGPENP----------------------KLEMLEKILQRQFSSSNSPRGII  372
            K     L  H   +                       K   L  IL     S ++   ++
Sbjct  411  KLAEEFLKDHIFLSVGRVGSTSENITQRIVECESDKDKDSALLDIL----CSDSTGLTLV  466

Query  373  FTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTL  432
            F  T++ A  L  +L   +   T              +     TQR+++  ++ F+ G  
Sbjct  467  FVETKRQADMLSDFLLDHRLPAT--------------AIHGDRTQRERERALELFRTGRC  512

Query  433  NLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSV--YAFVATEGSRE  489
             +LVAT+VA  GLDIP+   V+ Y L       V   GR  RA  +    AF +   + +
Sbjct  513  PILVATAVAARGLDIPNVTHVINYDLPNEIDDYVHRIGRTGRAGNTGISTAFFSRSKNFK  572

Query  490  LKRELINEALETLME  504
            + R L++   +   E
Sbjct  573  IARSLVDLLKDANQE  587


 Score = 45.6 bits (106),  Expect = 0.002, Method: Composition-based stats.
 Identities = 25/140 (18%), Positives = 50/140 (36%), Gaps = 25/140 (18%)

Query  15   LEGKNIIIWLPTGAGKT--RAAAYVAKRHLETVDGAK--------------VVVLVNRVH  58
            + G++++    TG+GKT       +++        A+               ++L     
Sbjct  238  MGGRDLMACAQTGSGKTGGFLFPILSQSLHTRGPEAEAARGLGRQQKAYPTALILGPTRE  297

Query  59   LVTQHGEEFRRM---LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE  115
            LV+Q  +E R+          V     +MG +     L +  ++L+ T   L   +    
Sbjct  298  LVSQIYDEARKFCYRTALHPRVVYGGAEMGNQLR--QLDQGCNVLVATPGRLVDMM----  351

Query  116  EEEHVELTVFSLIVVDECHH  135
            E   + L     +V+DE   
Sbjct  352  ERGRISLAHIQYLVLDEADR  371


>sp|Q3BNH8|RHLB_XANE5 ATP-dependent RNA helicase RhlB OS=Xanthomonas 
euvesicatoria pv. vesicatoria (strain 85-10) OX=316273 
GN=rhlB PE=3 SV=1
Length=573

 Score = 137 bits (344),  Expect = 8e-33, Method: Composition-based stats.
 Identities = 68/399 (17%), Positives = 123/399 (31%), Gaps = 58/399 (15%)

Query  147  SQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQ  206
                ++        P ++    S G    + +      V     ++              
Sbjct  4    KPLTDVTFSSFDLHPALIAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAF  63

Query  207  LQEHSQQPCKQYNLCHRRSQDPFGDLL---KKLMDQIH------DHLEMPELSRKFGTQM  257
            L     +   +  L  R+ +DP   +L   ++L  QIH              +  +G   
Sbjct  64   LVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVD  123

Query  258  YEQQVVKLSEAAALAGLQEQRVYALHLRRYN------DALLIHDTVRAVDALAALQDFYH  311
            Y++Q   L +   +      R+     +         +  ++ +  R  D L  ++D   
Sbjct  124  YDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFD-LGFIKDIRF  182

Query  312  REHVTKTQILCAERRLLALFDDRKNELAHLATHGPE-------------------NPKLE  352
                   +         A    R  ELA+   + PE                    P  E
Sbjct  183  LLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETESITAARVRQRIYFPSDE  242

Query  353  MLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQS  412
              + +L    S S   R ++F  T+     +   L++               G      S
Sbjct  243  EKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLER--------------HGYRVGVLS  288

Query  413  THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-  471
              + Q+ ++ ++ +FQ G L +LVAT VA  GL I     V  Y L  +    V   GR 
Sbjct  289  GDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRT  348

Query  472  ARADQSV--YAFVATEGSRELKRELINEALETLMEQAVA  508
            AR  +     +F     +  L        +E  +EQ + 
Sbjct  349  ARLGEEGDAISFACERYAMSLP------DIEAYIEQKIP  381


 Score = 51.0 bits (120),  Expect = 3e-05, Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 12/119 (10%)

Query  26   TGAGKT---RAAA---YVAKRHL--ETVDGAKVVVLVNRVHLVTQ-HGEEFRRMLDGRWT  76
            TG GKT     A     + +  L     +  + ++L     L  Q H +  +   D    
Sbjct  55   TGTGKTLAFLVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLR  114

Query  77   VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH  135
               + G +        L +  D++I T   L   +   ++ + V L    + V+DE   
Sbjct  115  FALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYV---KQHKVVSLHACEICVLDEADR  170


>sp|Q8P4D4|RHLB_XANCP ATP-dependent RNA helicase RhlB OS=Xanthomonas 
campestris pv. campestris (strain ATCC 33913 / DSM 3586 
/ NCPPB 528 / LMG 568 / P 25) OX=190485 GN=rhlB PE=3 SV=1
Length=573

 Score = 137 bits (344),  Expect = 8e-33, Method: Composition-based stats.
 Identities = 69/399 (17%), Positives = 123/399 (31%), Gaps = 58/399 (15%)

Query  147  SQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQ  206
                +L        P ++    S G    + +      V     ++              
Sbjct  4    KPLTDLTFSSFDLHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAF  63

Query  207  LQEHSQQPCKQYNLCHRRSQDPFGDLL---KKLMDQIH------DHLEMPELSRKFGTQM  257
            L     +   +  L  R+ +DP   +L   ++L  QIH              +  +G   
Sbjct  64   LVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVD  123

Query  258  YEQQVVKLSEAAALAGLQEQRVYALHLRRYN------DALLIHDTVRAVDALAALQDFYH  311
            Y++Q   L +   +      R+     +         +  ++ +  R  D L  ++D   
Sbjct  124  YDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFD-LGFIKDIRF  182

Query  312  REHVTKTQILCAERRLLALFDDRKNELAHLATHGPE-------------------NPKLE  352
                   +         A    R  ELA+   + PE                    P  E
Sbjct  183  LLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPSDE  242

Query  353  MLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQS  412
              + +L    S S   R ++F  T+     +   L++               G      S
Sbjct  243  EKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLER--------------HGYRVGVLS  288

Query  413  THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-  471
              + Q+ ++ ++ +FQ G L +LVAT VA  GL I     V  Y L  +    V   GR 
Sbjct  289  GDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRT  348

Query  472  ARADQSV--YAFVATEGSRELKRELINEALETLMEQAVA  508
            AR  +     +F     +  L        +E  +EQ + 
Sbjct  349  ARLGEEGDAISFACERYAMSLP------DIEAYIEQKIP  381


 Score = 51.0 bits (120),  Expect = 3e-05, Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 12/119 (10%)

Query  26   TGAGKT---RAAA---YVAKRHL--ETVDGAKVVVLVNRVHLVTQ-HGEEFRRMLDGRWT  76
            TG GKT     A     + +  L     +  + ++L     L  Q H +  +   D    
Sbjct  55   TGTGKTLAFLVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLR  114

Query  77   VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH  135
               + G +        L +  D++I T   L   +   ++ + V L    + V+DE   
Sbjct  115  FALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYV---KQHKVVSLHACEICVLDEADR  170


>sp|B0RWT6|RHLB_XANCB ATP-dependent RNA helicase RhlB OS=Xanthomonas 
campestris pv. campestris (strain B100) OX=509169 GN=rhlB 
PE=3 SV=1
Length=573

 Score = 137 bits (344),  Expect = 8e-33, Method: Composition-based stats.
 Identities = 69/399 (17%), Positives = 123/399 (31%), Gaps = 58/399 (15%)

Query  147  SQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQ  206
                +L        P ++    S G    + +      V     ++              
Sbjct  4    KPLTDLTFSSFDLHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAF  63

Query  207  LQEHSQQPCKQYNLCHRRSQDPFGDLL---KKLMDQIH------DHLEMPELSRKFGTQM  257
            L     +   +  L  R+ +DP   +L   ++L  QIH              +  +G   
Sbjct  64   LVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVD  123

Query  258  YEQQVVKLSEAAALAGLQEQRVYALHLRRYN------DALLIHDTVRAVDALAALQDFYH  311
            Y++Q   L +   +      R+     +         +  ++ +  R  D L  ++D   
Sbjct  124  YDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFD-LGFIKDIRF  182

Query  312  REHVTKTQILCAERRLLALFDDRKNELAHLATHGPE-------------------NPKLE  352
                   +         A    R  ELA+   + PE                    P  E
Sbjct  183  LLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPSDE  242

Query  353  MLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQS  412
              + +L    S S   R ++F  T+     +   L++               G      S
Sbjct  243  EKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLER--------------HGYRVGVLS  288

Query  413  THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-  471
              + Q+ ++ ++ +FQ G L +LVAT VA  GL I     V  Y L  +    V   GR 
Sbjct  289  GDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRT  348

Query  472  ARADQSV--YAFVATEGSRELKRELINEALETLMEQAVA  508
            AR  +     +F     +  L        +E  +EQ + 
Sbjct  349  ARLGEEGDAISFACERYAMSLP------DIEAYIEQKIP  381


 Score = 51.0 bits (120),  Expect = 3e-05, Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 12/119 (10%)

Query  26   TGAGKT---RAAA---YVAKRHL--ETVDGAKVVVLVNRVHLVTQ-HGEEFRRMLDGRWT  76
            TG GKT     A     + +  L     +  + ++L     L  Q H +  +   D    
Sbjct  55   TGTGKTLAFLVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLR  114

Query  77   VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH  135
               + G +        L +  D++I T   L   +   ++ + V L    + V+DE   
Sbjct  115  FALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYV---KQHKVVSLHACEICVLDEADR  170


>sp|Q4UPY5|RHLB_XANC8 ATP-dependent RNA helicase RhlB OS=Xanthomonas 
campestris pv. campestris (strain 8004) OX=314565 GN=rhlB 
PE=3 SV=1
Length=573

 Score = 137 bits (344),  Expect = 8e-33, Method: Composition-based stats.
 Identities = 69/399 (17%), Positives = 123/399 (31%), Gaps = 58/399 (15%)

Query  147  SQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQ  206
                +L        P ++    S G    + +      V     ++              
Sbjct  4    KPLTDLTFSSFDLHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAF  63

Query  207  LQEHSQQPCKQYNLCHRRSQDPFGDLL---KKLMDQIH------DHLEMPELSRKFGTQM  257
            L     +   +  L  R+ +DP   +L   ++L  QIH              +  +G   
Sbjct  64   LVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVD  123

Query  258  YEQQVVKLSEAAALAGLQEQRVYALHLRRYN------DALLIHDTVRAVDALAALQDFYH  311
            Y++Q   L +   +      R+     +         +  ++ +  R  D L  ++D   
Sbjct  124  YDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFD-LGFIKDIRF  182

Query  312  REHVTKTQILCAERRLLALFDDRKNELAHLATHGPE-------------------NPKLE  352
                   +         A    R  ELA+   + PE                    P  E
Sbjct  183  LLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPSDE  242

Query  353  MLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQS  412
              + +L    S S   R ++F  T+     +   L++               G      S
Sbjct  243  EKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLER--------------HGYRVGVLS  288

Query  413  THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-  471
              + Q+ ++ ++ +FQ G L +LVAT VA  GL I     V  Y L  +    V   GR 
Sbjct  289  GDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRT  348

Query  472  ARADQSV--YAFVATEGSRELKRELINEALETLMEQAVA  508
            AR  +     +F     +  L        +E  +EQ + 
Sbjct  349  ARLGEEGDAISFACERYAMSLP------DIEAYIEQKIP  381


 Score = 51.0 bits (120),  Expect = 3e-05, Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 12/119 (10%)

Query  26   TGAGKT---RAAA---YVAKRHL--ETVDGAKVVVLVNRVHLVTQ-HGEEFRRMLDGRWT  76
            TG GKT     A     + +  L     +  + ++L     L  Q H +  +   D    
Sbjct  55   TGTGKTLAFLVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLR  114

Query  77   VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH  135
               + G +        L +  D++I T   L   +   ++ + V L    + V+DE   
Sbjct  115  FALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYV---KQHKVVSLHACEICVLDEADR  170


>sp|Q59PR3|DBP8_CANAL ATP-dependent RNA helicase DBP8 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DBP8 
PE=3 SV=1
Length=440

 Score = 135 bits (339),  Expect = 9e-33, Method: Composition-based stats.
 Identities = 54/394 (14%), Positives = 130/394 (33%), Gaps = 45/394 (11%)

Query  163  VLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCH  222
            + GL  +P    A ++      +     N+    ++  ++   Q     ++P        
Sbjct  70   IFGLILTPTRELALQIAEQFAALGA-NMNIKVAVVVGGEDFVQQTLALQRKPHFVIATPG  128

Query  223  RRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYAL  282
            R +        + +         + + + +  +  +   + +  +    +  ++  ++  
Sbjct  129  RLADHILNSGEETISGLRRVKYLVLDEADRLLSNSFGSDLQRCFDVLPTSDKRQTLLFTA  188

Query  283  HLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLA  342
             +     AL           +     F H         + +  ++  +F           
Sbjct  189  TITDAVRALKEKPPTPGKPPV-----FMHEVETVDKVAIPSTLQISYVFV----------  233

Query  343  THGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL  402
               P   K   L  IL            +IF     +A  L   L++      +D R   
Sbjct  234  ---PSYVKEAYLNSIL--HLEQFKDSTAVIFVNRTTTAEVLRRMLRK------LDFRVAS  282

Query  403  LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE  462
            L         + M Q ++   + +F+ G   +L+AT VA  GLDIP   +V+ + +  + 
Sbjct  283  L--------HSEMPQSERTNSLHRFKAGAARILIATDVASRGLDIPTVELVINFDIPADP  334

Query  463  ISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK  521
               +   GR ARA +   A     G +++ R      ++++ E+    ++ ++       
Sbjct  335  DDFIHRVGRTARAGRKGDAVSII-GEKDIDR------IQSIEERINKKMELLEDVNDDNV  387

Query  522  IRDLQQAALTKRAA--QAAQRENQRQQFPVEHVQ  553
            I++   A    +        +EN  ++  +   +
Sbjct  388  IKESLSATSVAKRESLMEMDKENFGERKKINRKK  421


 Score = 51.7 bits (122),  Expect = 1e-05, Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 59/169 (35%), Gaps = 9/169 (5%)

Query  15   LEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQ---HGEEFRRM  70
            L+G + I    TG+GKT A AA +  +  E   G   ++L     L  Q           
Sbjct  36   LKGHDCIGGAKTGSGKTIAFAAPMLTQWSEDPFGIFGLILTPTRELALQIAEQFAALGAN  95

Query  71   LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV  130
            ++ +  V     D   +     L R    +I T   L   + +  EE    L     +V+
Sbjct  96   MNIKVAVVVGGEDFVQQTL--ALQRKPHFVIATPGRLADHILNSGEETISGLRRVKYLVL  153

Query  131  DECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLD  179
            DE      ++  + +   +  L     +   Q L  TA+      +  +
Sbjct  154  DEADRLLSNSFGSDLQRCFDVLPTSDKR---QTLLFTATITDAVRALKE  199


>sp|Q55804|CRHR_SYNY3 RNA helicase CrhR OS=Synechocystis sp. (strain 
ATCC 27184 / PCC 6803 / Kazusa) OX=1111708 GN=crhR PE=1 
SV=1
Length=492

 Score = 136 bits (341),  Expect = 1e-32, Method: Composition-based stats.
 Identities = 64/327 (20%), Positives = 128/327 (39%), Gaps = 44/327 (13%)

Query  228  PFGDLLKKLMDQIHD--HLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYAL---  282
            P  +L +++ + + D  H     +   +G Q  E+Q+  L     +      RV  L   
Sbjct  82   PTRELAQQVAEAMKDFSHERRLFILNVYGGQSIERQIRSLERGVQIVVGTPGRVIDLIDR  141

Query  283  -HLRRYNDALLIHDTVRAVDALAALQD---FYHREHVTK------TQILCAERRLLALFD  332
              L+      ++ D    + ++  + D      +   T+        +    + L+  F 
Sbjct  142  KKLKLETIQWVVLDEADEMLSMGFIDDVKTILRKTPPTRQTACFSATMPREIKELVNQFL  201

Query  333  DRKNELAHLATHGPENPKLEMLEKI---------LQRQFSSSNSPRGIIFTRTRQSAHSL  383
            +    +    T        + L  +         LQ      +    IIF RT+Q+A  L
Sbjct  202  NDPALVTVKQTQSTPTRIEQQLYHVPRGWSKAKALQPILEMEDPESAIIFVRTKQTAADL  261

Query  384  LLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEE  443
               LQ+               G        +++Q  ++ ++ +F+DG + L+VAT +A  
Sbjct  262  TSRLQEA--------------GHSVDEYHGNLSQSQRERLVHRFRDGKIKLVVATDIAAR  307

Query  444  GLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETL  502
            GLD+ + + VV + L  N  + +   GR  RA ++  A    E    + R L+  ++E  
Sbjct  308  GLDVNNLSHVVNFDLPDNAETYIHRIGRTGRAGKTGKAIALVE---PIDRRLL-RSIENR  363

Query  503  MEQAVAAVQKMDQAEYQAK-IRDLQQA  528
            ++Q +      ++++ +AK I  LQ+ 
Sbjct  364  LKQQIEVCTIPNRSQVEAKRIEKLQEQ  390


 Score = 49.0 bits (115),  Expect = 1e-04, Method: Composition-based stats.
 Identities = 25/128 (20%), Positives = 48/128 (38%), Gaps = 5/128 (4%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEE  66
            Q E I   L G++++    TG GKT A A      ++     + ++L     L  Q  E 
Sbjct  34   QTEAIPLLLSGRDMLAQSQTGTGKTAAFALPLMDRIDPEGDLQALILTPTRELAQQVAEA  93

Query  67   FRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF  125
             +    + R  +  + G          L R   +++ T   +   +   +    ++L   
Sbjct  94   MKDFSHERRLFILNVYGGQSIERQIRSLERGVQIVVGTPGRVIDLIDRKK----LKLETI  149

Query  126  SLIVVDEC  133
              +V+DE 
Sbjct  150  QWVVLDEA  157


>sp|Q2UNB7|RRP3_ASPOR ATP-dependent rRNA helicase rrp3 OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=rrp3 
PE=3 SV=1
Length=472

 Score = 135 bits (340),  Expect = 1e-32, Method: Composition-based stats.
 Identities = 68/382 (18%), Positives = 127/382 (33%), Gaps = 48/382 (13%)

Query  193  DTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSR-  251
            +T    +     P LQ    +P   + L       P  +L  ++            +   
Sbjct  97   ETGSGKTAAFALPILQALMDKPSSFFGLVLA----PTRELAYQISQAFEGLGSTISVRST  152

Query  252  -KFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFY  310
               G      Q + L +   +      R+   HL       L +     +D    L D  
Sbjct  153  VLVGGMDMVSQSIALGKKPHIIVATPGRLLD-HLENTKGFSLRNLKYLVMDEADRLLDMD  211

Query  311  HREHVTKTQILCAERRLLALFD----DRKNELAHLATHGPE-----NPKLEMLEKILQRQ  361
                + K   +    R   LF      +   L   +   P      + K + +  + Q  
Sbjct  212  FGPILDKILKVLPRERRTYLFSATMSSKVESLQRASLQNPLRVAVSSSKFQTVSTLQQSY  271

Query  362  FSSSNSPR---------------GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA  406
                +  +                IIF RT      L  +L+              L+G 
Sbjct  272  IFIPHKHKDLYLVYLLNEFVGQSCIIFCRTVHETQRLSFFLR--------------LLGF  317

Query  407  GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV  466
            G       ++Q  +   + KF+  + ++LVAT VA  GLDIP  +VV+ + L  +  + +
Sbjct  318  GAIPLHGQLSQSARLGALGKFRSRSRDILVATDVAARGLDIPSVDVVLNFDLPGDSKTFI  377

Query  467  QARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDL  525
               GR ARA +S  A              I  AL   + +  A  +K +      ++ + 
Sbjct  378  HRIGRTARAGKSGVAISFATQYDVEAWLRIEGALGKKLPEYPA--EKDEVMVLAERVSEA  435

Query  526  QQAALTKRAAQAAQRENQRQQF  547
            Q++A+ +      ++ ++ ++F
Sbjct  436  QRSAILEMKNYDEKKGSRGKKF  457


 Score = 70.6 bits (171),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 67/420 (16%), Positives = 126/420 (30%), Gaps = 34/420 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKV-VVLVNRVHLVTQHGE  65
            Q E I  AL+G+++I    TG+GKT A A    + L     +   +VL     L  Q  +
Sbjct  79   QAEAIPLALQGRDLIGLAETGSGKTAAFALPILQALMDKPSSFFGLVLAPTRELAYQISQ  138

Query  66   EFRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
             F  +        T L G M   +    L +   +++ T   L   L + +      L  
Sbjct  139  AFEGLGSTISVRSTVLVGGMDMVSQSIALGKKPHIIVATPGRLLDHLENTKG---FSLRN  195

Query  125  FSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINH  184
               +V+DE      D  +  I+ + L++  +  +        +A+  +   S    ++ +
Sbjct  196  LKYLVMDEADRLL-DMDFGPILDKILKVLPRERRTYL----FSATMSSKVESLQRASLQN  250

Query  185  VLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHL  244
             L++  +   +  +S          H  +      L      +  G         +H+  
Sbjct  251  PLRVAVSSSKFQTVSTLQQSYIFIPHKHKDLYLVYL----LNEFVGQSCIIFCRTVHETQ  306

Query  245  EMPELSRKFG-----TQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRA  299
             +    R  G           Q  +L             + A  +      +   D V  
Sbjct  307  RLSFFLRLLGFGAIPLHGQLSQSARLGALGKFRSRSRDILVATDVAARGLDIPSVDVVLN  366

Query  300  VDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQ  359
             D     + F HR   T       +  +   F  + +  A L   G    KL        
Sbjct  367  FDLPGDSKTFIHRIGRTAR---AGKSGVAISFATQYDVEAWLRIEGALGKKLPE------  417

Query  360  RQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRD  419
                 +     ++       A      L+ +   +    R +    A        M Q +
Sbjct  418  ---YPAEKDEVMVLAERVSEAQR-SAILEMKNYDEKKGSRGKKF--AKGKRSREDMDQEE  471


>sp|Q501J6|DDX17_MOUSE Probable ATP-dependent RNA helicase DDX17 
OS=Mus musculus OX=10090 GN=Ddx17 PE=1 SV=1
Length=650

 Score = 137 bits (345),  Expect = 1e-32, Method: Composition-based stats.
 Identities = 73/416 (18%), Positives = 136/416 (33%), Gaps = 69/416 (17%)

Query  134  HHTHK-DTVYNVIM-SQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCAN  191
            HH +    V +V+M   + E    + Q  P  L L+     G A    G           
Sbjct  95   HHANFPQYVMDVLMDQHFTEPTPIQCQGFP--LALSGRDMVGIAQTGSG-----------  141

Query  192  LDTWCIMSPQNCCPQLQEHSQQP-CKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELS  250
                   +     P +   + QP  ++ +        P  +L +++     D+ +   L 
Sbjct  142  ------KTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLK  195

Query  251  RK--FGTQMYEQQVVKLSEAAALAGLQEQRVYAL------HLRRYNDALLIHDTVRAVD-  301
                +G      Q+  L     +      R+         +LRR    L++ +  R +D 
Sbjct  196  STCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRC-TYLVLDEADRMLDM  254

Query  302  ----ALAALQDFYHREHVTKTQILCAERRLLALFDDR----------------KNELAHL  341
                 +  + D    +  T        + +  L +D                  + +  +
Sbjct  255  GFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQI  314

Query  342  ATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQ  401
                 E+ K   L + L  +  +    + IIF  T++    L   +++            
Sbjct  315  VDVCMESEKDHKLIQ-LMEEIMAEKENKTIIFVETKRRCDDLTRRMRRD-----------  362

Query  402  LLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN  461
               G          +Q ++  V+ +F+ G   +L+AT VA  GLD+     V+ Y    +
Sbjct  363  ---GWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNS  419

Query  462  EISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQ  515
                V   GR AR+     A+   T G+ +  RELI    E         +Q +D 
Sbjct  420  SEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKLMQLVDH  475


 Score = 47.1 bits (110),  Expect = 5e-04, Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 49/136 (36%), Gaps = 11/136 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA----AAYVAKR--HLETVDGAKVVVLVNRVHLV  60
            Q +    AL G++++    TG+GKT A    A        +LE  DG   +VL     L 
Sbjct  119  QCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELA  178

Query  61   TQHGEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
             Q  +         R   T + G          L R  ++ I T   L   L S +    
Sbjct  179  QQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTN--  236

Query  120  VELTVFSLIVVDECHH  135
              L   + +V+DE   
Sbjct  237  --LRRCTYLVLDEADR  250


>sp|Q8PFZ3|RHLB_XANAC ATP-dependent RNA helicase RhlB OS=Xanthomonas 
axonopodis pv. citri (strain 306) OX=190486 GN=rhlB PE=3 
SV=1
Length=571

 Score = 136 bits (343),  Expect = 1e-32, Method: Composition-based stats.
 Identities = 68/399 (17%), Positives = 123/399 (31%), Gaps = 58/399 (15%)

Query  147  SQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQ  206
                ++        P ++    S G    + +      V     ++              
Sbjct  4    KPLTDVTFSSFDLHPALIAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAF  63

Query  207  LQEHSQQPCKQYNLCHRRSQDPFGDLL---KKLMDQIH------DHLEMPELSRKFGTQM  257
            L     +   +  L  R+ +DP   +L   ++L  QIH              +  +G   
Sbjct  64   LVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVD  123

Query  258  YEQQVVKLSEAAALAGLQEQRVYALHLRRYN------DALLIHDTVRAVDALAALQDFYH  311
            Y++Q   L +   +      R+     +         +  ++ +  R  D L  ++D   
Sbjct  124  YDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFD-LGFIKDIRF  182

Query  312  REHVTKTQILCAERRLLALFDDRKNELAHLATHGPE-------------------NPKLE  352
                   +         A    R  ELA+   + PE                    P  E
Sbjct  183  LLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETESITAARVRQRIYFPSDE  242

Query  353  MLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQS  412
              + +L    S S   R ++F  T+     +   L++               G      S
Sbjct  243  EKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLER--------------HGYRVGVLS  288

Query  413  THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-  471
              + Q+ ++ ++ +FQ G L +LVAT VA  GL I     V  Y L  +    V   GR 
Sbjct  289  GDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRT  348

Query  472  ARADQSV--YAFVATEGSRELKRELINEALETLMEQAVA  508
            AR  +     +F     +  L        +E  +EQ + 
Sbjct  349  ARLGEEGDAISFACERYAMSLP------DIEAYIEQKIP  381


 Score = 50.6 bits (119),  Expect = 4e-05, Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 12/119 (10%)

Query  26   TGAGKT---RAAA---YVAKRHL--ETVDGAKVVVLVNRVHLVTQ-HGEEFRRMLDGRWT  76
            TG GKT     A     + +  L     +  + ++L     L  Q H +  +   D    
Sbjct  55   TGTGKTLAFLVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLR  114

Query  77   VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH  135
               + G +        L +  D++I T   L   +   ++ + V L    + V+DE   
Sbjct  115  FALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYV---KQHKVVSLHACEICVLDEADR  170


>sp|P24346|DDX3_XENLA Putative ATP-dependent RNA helicase an3 
OS=Xenopus laevis OX=8355 GN=an3 PE=2 SV=1
Length=697

 Score = 138 bits (346),  Expect = 1e-32, Method: Composition-based stats.
 Identities = 54/283 (19%), Positives = 103/283 (36%), Gaps = 48/283 (17%)

Query  253  FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND-----ALLIHDTVRAVDALAALQ  307
            +G     QQ+  L     L      R+  +  R          L++ +  R +D     Q
Sbjct  342  YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ  401

Query  308  DFYHREHVTKTQILCAERRLLALFDDRKNELAHL------------------ATHGPENP  349
                R  V +  +     R   +F     +   +                  +T      
Sbjct  402  ---IRRIVEQDTMPPKGVRQTMMFSATFPKEIQILARDFLDEYIFLAVGRVGSTSENITQ  458

Query  350  KLEMLEKILQRQF------SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLL  403
            K+  +E++ +R F      ++      ++F  T++ A +L  +L  +             
Sbjct  459  KVVWVEEMDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYHE-------------  505

Query  404  IGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI  463
             G   +S     +QRD++E + +F+ G   +LVAT+VA  GLDI +   V+ + L ++  
Sbjct  506  -GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIE  564

Query  464  SMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLME  504
              V   GR  R      A     E +  + ++L++  +E   E
Sbjct  565  EYVHRIGRTGRVGNLGLATSFFNEKNINITKDLLDLLVEAKQE  607


 Score = 48.6 bits (114),  Expect = 2e-04, Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 48/150 (32%), Gaps = 26/150 (17%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYV--------------AKRHLETVDGAK---  49
            Q   I   +E ++++    TG+GKT AA  +               K   E     +   
Sbjct  248  QKHAIPIIIEKRDLMACAQTGSGKT-AAFLLPILSQIYADGPGDAMKHLQENGRYGRRKQ  306

Query  50   ---VVVLVNRVHLVTQHGEEFRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAE  105
                +VL     L  Q  EE R+     R     + G          L R   LL+ T  
Sbjct  307  FPLSLVLAPTRELAVQIYEEARKFAYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPG  366

Query  106  LLQMALTSPEEEEHVELTVFSLIVVDECHH  135
             L   +    E   + L     +V+DE   
Sbjct  367  RLVDMM----ERGKIGLDFCKYLVLDEADR  392


>sp|Q81IT9|CSHA_BACCR DEAD-box ATP-dependent RNA helicase CshA 
OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 
/ JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711) 
OX=226900 GN=cshA PE=2 SV=2
Length=533

 Score = 136 bits (342),  Expect = 1e-32, Method: Composition-based stats.
 Identities = 66/324 (20%), Positives = 119/324 (37%), Gaps = 53/324 (16%)

Query  253  FGTQMYEQQVVKLSEAAALAGLQEQRVYA----LHLRRYNDALLIHDTVRAVDALAALQD  308
            +G Q   +Q+  L +   +      R+        LR  N   ++ D    +  +  ++D
Sbjct  105  YGGQDINRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIED  164

Query  309  F---------YHREHVTKTQILCAERRLLALFDDRKNELA------------HLATHGPE  347
                       H+  +    +    RR+   F      +                    E
Sbjct  165  IEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQE  224

Query  348  NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG  407
              K ++L ++L  Q    +    I+F RT++    L   L               L G  
Sbjct  225  KKKFDVLTRLLDIQ----SPELAIVFGRTKRRVDELSEALN--------------LRGYA  266

Query  408  NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
                   +TQ  +  V++KF++G++ +LVAT VA  GLDI     V  + +  +  S V 
Sbjct  267  AEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVH  326

Query  468  ARGR-ARADQSVYA--FVATEGSRELK------RELINEALETLMEQAVAAVQKMDQAEY  518
              GR  RA +   A  FV    S +LK      +  ++      +++A+   Q++   + 
Sbjct  327  RIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKL  386

Query  519  QAKIRDLQQAALTKRAAQAAQREN  542
            Q+ I + +  A  KR A+    EN
Sbjct  387  QSTIEN-ENLAYYKRIAEEMLEEN  409


 Score = 50.6 bits (119),  Expect = 4e-05, Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 51/129 (40%), Gaps = 6/129 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLET-VDGAKVVVLVNRVHLVTQHGE  65
            Q E I  AL+GK+II    TG GKT A        ++T  +  + +V+     L  Q GE
Sbjct  29   QAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGE  88

Query  66   EFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
            E  ++    R  +  + G          L +   +++ T   +   +        + L  
Sbjct  89   ELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINRKT----LRLQN  144

Query  125  FSLIVVDEC  133
               +V+DE 
Sbjct  145  VETVVLDEA  153


>sp|Q6CXW0|DBP8_KLULA ATP-dependent RNA helicase DBP8 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 
1267 / NRRL Y-1140 / WM37) OX=284590 GN=DBP8 PE=3 SV=1
Length=435

 Score = 134 bits (337),  Expect = 1e-32, Method: Composition-based stats.
 Identities = 52/213 (24%), Positives = 92/213 (43%), Gaps = 23/213 (11%)

Query  346  PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
            PE+ K   L +IL  +    +S   IIF     +A  L   L+      ++D+R   L  
Sbjct  237  PEHVKESYLYQILTSEKYVKSS--CIIFVNRTVTAEILRRTLK------SLDVRVTSL--  286

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM  465
                   + M Q+++   +Q+F+     +L+AT VA  GLDIP   +VV Y +  N  + 
Sbjct  287  ------HSQMPQQERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTF  340

Query  466  VQARGR-ARADQSV--YAFVATEGSRELK--RELINEALETLMEQAVAAVQKMDQAEYQA  520
            +   GR ARA +      FV  +  + ++   E IN+ +E   +    AV +    +  A
Sbjct  341  IHRAGRTARAGRHGESLCFVTEKDIQRVEAIEERINKKMEEFTDVGDTAVIRKSLTKVTA  400

Query  521  KIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQ  553
              R+   A    +     +R+ Q+++   +   
Sbjct  401  AKRESLMA--MDKEGFGERRKLQKRKNESKEKT  431


 Score = 54.4 bits (129),  Expect = 2e-06, Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 48/135 (36%), Gaps = 9/135 (7%)

Query  7    QWEVIMPA-----LEGKNIIIWLPTGAGKT--RAAAYVAKRHLETVDGAKVVVLVNRVHL  59
            Q   I  A     L+G++ I    TG+GKT   AA  + K   E   G   +VL     L
Sbjct  26   QPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTK-WSEDPQGMFGIVLTPTREL  84

Query  60   VTQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEE  118
              Q  E+F          V  + G          L +    +I T   L   + +  E+ 
Sbjct  85   AMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPHFIIATPGRLAHHVLNSGEDT  144

Query  119  HVELTVFSLIVVDEC  133
               L     +V+DE 
Sbjct  145  IGGLKRVKFLVLDEA  159


>sp|A1D373|PRP5_NEOFI Pre-mRNA-processing ATP-dependent RNA helicase 
prp5 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 
3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) 
OX=331117 GN=prp5 PE=3 SV=1
Length=1193

 Score = 138 bits (348),  Expect = 1e-32, Method: Composition-based stats.
 Identities = 67/368 (18%), Positives = 127/368 (35%), Gaps = 47/368 (13%)

Query  212  QQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAA  269
            Q+P +           P  +L  ++       L+   L     +G    + Q+ +L   A
Sbjct  622  QRPLENMEGPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAELKRGA  681

Query  270  ALAGLQEQRVYAL--------HLRRYNDALLIHDTVRAVD---------ALAALQDFYH-  311
             +      R+  L           R    +++ +  R  D          +A ++     
Sbjct  682  EIVVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRPDRQT  741

Query  312  ----------REHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQ  361
                       E + +  +      ++        E+  +     E+ K   L +IL   
Sbjct  742  VLFSATFPRNMEALARKSLTKPIEIVVGGKSVVAPEITQIVEVRNEDTKFVRLLEILGNL  801

Query  362  FSS--SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRD  419
            +S   +   R +IF   +++A +LL  L ++              G    S      Q D
Sbjct  802  YSDDANEDARALIFVDRQEAADTLLRELMRK--------------GYPCMSIHGGKDQID  847

Query  420  QQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSV  478
            +   I+ F+ G   +L+ATSVA  GLD+    +VV Y    +    V   GR  RA  + 
Sbjct  848  RDSTIEDFKAGIFPILIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTG  907

Query  479  YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA  538
             A       +E     I +AL    ++    VQKM  +  +      ++A+ +    +  
Sbjct  908  TAVTFLTEEQERYSVDIAKALRQSGQKVPEPVQKMVDSFLEKVKAGKEKASASGFGGKGL  967

Query  539  QRENQRQQ  546
            +R +Q + 
Sbjct  968  ERLDQERD  975


 Score = 61.4 bits (147),  Expect = 3e-08, Method: Composition-based stats.
 Identities = 61/388 (16%), Positives = 123/388 (32%), Gaps = 42/388 (11%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYV-AKRH------LETVDGAKVVVLVNRVHL  59
            Q + I   + G+++I    TG+GKT  A  +   RH      LE ++G   +++     L
Sbjct  584  QSQAIPAIMSGRDVIGVAKTGSGKT-IAFLIPMFRHIRDQRPLENMEGPIGLIMTPTREL  642

Query  60   VTQHGEEFRRMLDG--RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE  117
             TQ  ++ +  L       V    G          L R  ++++CT   +   L +    
Sbjct  643  ATQIHKDCKPFLKALNLRAVCAYGGAPIKDQI-AELKRGAEIVVCTPGRMIDLLAANAGR  701

Query  118  EHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS-PGTGGAS  176
                L   + +V+DE            +M     ++  R   L      +A+ P    A 
Sbjct  702  -VTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRPDRQTVL-----FSATFPRNMEAL  755

Query  177  KLDGAINHVL-----QLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYN---------LCH  222
                    +      +     +   I+  +N   +     +     Y+         L  
Sbjct  756  ARKSLTKPIEIVVGGKSVVAPEITQIVEVRNEDTKFVRLLEILGNLYSDDANEDARALIF  815

Query  223  RRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYAL  282
               Q+    LL++LM + +  + +     +       +      +A     L    V A 
Sbjct  816  VDRQEAADTLLRELMRKGYPCMSIHGGKDQIDRDSTIE----DFKAGIFPILIATSVAAR  871

Query  283  HLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLA  342
             L      L+++      DA   L+D+ HR   T               +  +  +    
Sbjct  872  GLDVKQLKLVVN-----YDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEEQERYSVDIAK  926

Query  343  THGPENPKL-EMLEKILQRQFSSSNSPR  369
                   K+ E ++K++        + +
Sbjct  927  ALRQSGQKVPEPVQKMVDSFLEKVKAGK  954


>sp|A1CQA9|PRP5_ASPCL Pre-mRNA-processing ATP-dependent RNA helicase 
prp5 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 
513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 
GN=prp5 PE=3 SV=1
Length=1192

 Score = 138 bits (348),  Expect = 1e-32, Method: Composition-based stats.
 Identities = 68/368 (18%), Positives = 126/368 (34%), Gaps = 47/368 (13%)

Query  212  QQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAA  269
            Q+P             P  +L  ++       L+   L     +G    + Q+  L   A
Sbjct  622  QRPLDNMEGPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIADLKRGA  681

Query  270  ALAGLQEQRVYAL--------HLRRYNDALLIHDTVRAVD---------ALAALQDFYH-  311
             +      R+  L           R    +++ +  R  D          +A ++     
Sbjct  682  EIVVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRPDRQT  741

Query  312  ----------REHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQ  361
                       E + +  +      ++        E+  +     E+ K   L +IL   
Sbjct  742  VLFSATFPRNMEALARKALTKPIEIIVGGRSVVAPEITQIVEVRNEDTKFVRLLEILGNL  801

Query  362  FSS--SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRD  419
            +S   +   R +IF   +++A +LL  L ++              G    S      Q D
Sbjct  802  YSDDANEDARSLIFVERQEAADALLRELMRK--------------GYPCMSIHGGKDQID  847

Query  420  QQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSV  478
            +   I+ F+ G   +L+ATSVA  GLD+    +VV Y    +    V   GR  RA  + 
Sbjct  848  RDSTIEDFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTG  907

Query  479  YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA  538
             A       +E     I +AL+   +Q    VQKM  +  +      ++A+ +    +  
Sbjct  908  TAVTFLTEEQERYSVDIAKALKQSGQQVPEPVQKMVDSFLEKVKAGKEKASASGFGGKGL  967

Query  539  QRENQRQQ  546
            +R +Q + 
Sbjct  968  ERLDQERD  975


 Score = 56.3 bits (134),  Expect = 9e-07, Method: Composition-based stats.
 Identities = 56/330 (17%), Positives = 109/330 (33%), Gaps = 41/330 (12%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYV-AKRH------LETVDGAKVVVLVNRVHL  59
            Q + I   + G+++I    TG+GKT  A  +   RH      L+ ++G   +++     L
Sbjct  584  QSQAIPAIMSGRDVIGVAKTGSGKT-VAFLIPMFRHIKDQRPLDNMEGPIGLIMTPTREL  642

Query  60   VTQHGEEFRRMLDG--RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE  117
             TQ  ++ +  L       V    G          L R  ++++CT   +   L +    
Sbjct  643  ATQIHKDCKPFLKALNLRAVCAYGGAPIKDQI-ADLKRGAEIVVCTPGRMIDLLAANAGR  701

Query  118  EHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS-PGTGGAS  176
                L   + +V+DE            +M     ++  R   L      +A+ P    A 
Sbjct  702  -VTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRPDRQTVL-----FSATFPRNMEAL  755

Query  177  KLDGAINHVLQLCA-----NLDTWCIMSPQNCCPQLQEHSQQPCKQY---------NLCH  222
                    +  +         +   I+  +N   +     +     Y         +L  
Sbjct  756  ARKALTKPIEIIVGGRSVVAPEITQIVEVRNEDTKFVRLLEILGNLYSDDANEDARSLIF  815

Query  223  RRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYAL  282
               Q+    LL++LM + +  + +     +       +      +A     L    V A 
Sbjct  816  VERQEAADALLRELMRKGYPCMSIHGGKDQIDRDSTIE----DFKAGIFPVLIATSVAAR  871

Query  283  HLRRYNDALLIHDTVRAVDALAALQDFYHR  312
             L      L+++      DA   L+D+ HR
Sbjct  872  GLDVKQLKLVVN-----YDAPNHLEDYVHR  896


>sp|Q6HPE6|CSHA_BACHK DEAD-box ATP-dependent RNA helicase CshA 
OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) OX=281309 
GN=cshA PE=3 SV=1
Length=528

 Score = 136 bits (341),  Expect = 2e-32, Method: Composition-based stats.
 Identities = 66/324 (20%), Positives = 119/324 (37%), Gaps = 53/324 (16%)

Query  253  FGTQMYEQQVVKLSEAAALAGLQEQRVYA----LHLRRYNDALLIHDTVRAVDALAALQD  308
            +G Q   +Q+  L +   +      R+        LR  N   ++ D    +  +  ++D
Sbjct  105  YGGQDINRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIED  164

Query  309  F---------YHREHVTKTQILCAERRLLALFDDRKNELA------------HLATHGPE  347
                       H+  +    +    RR+   F      +                    E
Sbjct  165  IEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQE  224

Query  348  NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG  407
              K ++L ++L  Q    +    I+F RT++    L   L               L G  
Sbjct  225  KKKFDVLTRLLDIQ----SPELAIVFGRTKRRVDELSEALN--------------LRGYA  266

Query  408  NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
                   +TQ  +  V++KF++G++ +LVAT VA  GLDI     V  + +  +  S V 
Sbjct  267  AEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVH  326

Query  468  ARGR-ARADQSVYA--FVATEGSRELK------RELINEALETLMEQAVAAVQKMDQAEY  518
              GR  RA +   A  FV    S +LK      +  ++      +++A+   Q++   + 
Sbjct  327  RIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKL  386

Query  519  QAKIRDLQQAALTKRAAQAAQREN  542
            Q+ I + +  A  KR A+    EN
Sbjct  387  QSTIEN-ENLAYYKRIAEEMLEEN  409


 Score = 50.2 bits (118),  Expect = 5e-05, Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 51/129 (40%), Gaps = 6/129 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLET-VDGAKVVVLVNRVHLVTQHGE  65
            Q E I  AL+GK+II    TG GKT A        ++T  +  + +V+     L  Q GE
Sbjct  29   QAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGE  88

Query  66   EFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
            E  ++    R  +  + G          L +   +++ T   +   +        + L  
Sbjct  89   ELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINRKT----LRLQN  144

Query  125  FSLIVVDEC  133
               +V+DE 
Sbjct  145  VETVVLDEA  153


>sp|Q81VG0|CSHA_BACAN DEAD-box ATP-dependent RNA helicase CshA 
OS=Bacillus anthracis OX=1392 GN=cshA PE=3 SV=1
Length=528

 Score = 136 bits (341),  Expect = 2e-32, Method: Composition-based stats.
 Identities = 66/324 (20%), Positives = 119/324 (37%), Gaps = 53/324 (16%)

Query  253  FGTQMYEQQVVKLSEAAALAGLQEQRVYA----LHLRRYNDALLIHDTVRAVDALAALQD  308
            +G Q   +Q+  L +   +      R+        LR  N   ++ D    +  +  ++D
Sbjct  105  YGGQDINRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIED  164

Query  309  F---------YHREHVTKTQILCAERRLLALFDDRKNELA------------HLATHGPE  347
                       H+  +    +    RR+   F      +                    E
Sbjct  165  IEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQE  224

Query  348  NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG  407
              K ++L ++L  Q    +    I+F RT++    L   L               L G  
Sbjct  225  KKKFDVLTRLLDIQ----SPELAIVFGRTKRRVDELSEALN--------------LRGYA  266

Query  408  NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
                   +TQ  +  V++KF++G++ +LVAT VA  GLDI     V  + +  +  S V 
Sbjct  267  AEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVH  326

Query  468  ARGR-ARADQSVYA--FVATEGSRELK------RELINEALETLMEQAVAAVQKMDQAEY  518
              GR  RA +   A  FV    S +LK      +  ++      +++A+   Q++   + 
Sbjct  327  RIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKL  386

Query  519  QAKIRDLQQAALTKRAAQAAQREN  542
            Q+ I + +  A  KR A+    EN
Sbjct  387  QSTIEN-ENLAYYKRIAEEMLEEN  409


 Score = 50.2 bits (118),  Expect = 5e-05, Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 51/129 (40%), Gaps = 6/129 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLET-VDGAKVVVLVNRVHLVTQHGE  65
            Q E I  AL+GK+II    TG GKT A        ++T  +  + +V+     L  Q GE
Sbjct  29   QAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGE  88

Query  66   EFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
            E  ++    R  +  + G          L +   +++ T   +   +        + L  
Sbjct  89   ELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINRKT----LRLQN  144

Query  125  FSLIVVDEC  133
               +V+DE 
Sbjct  145  VETVVLDEA  153


>sp|A0R8U6|CSHA_BACAH DEAD-box ATP-dependent RNA helicase CshA 
OS=Bacillus thuringiensis (strain Al Hakam) OX=412694 GN=cshA 
PE=3 SV=1
Length=528

 Score = 136 bits (341),  Expect = 2e-32, Method: Composition-based stats.
 Identities = 66/324 (20%), Positives = 119/324 (37%), Gaps = 53/324 (16%)

Query  253  FGTQMYEQQVVKLSEAAALAGLQEQRVYA----LHLRRYNDALLIHDTVRAVDALAALQD  308
            +G Q   +Q+  L +   +      R+        LR  N   ++ D    +  +  ++D
Sbjct  105  YGGQDINRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIED  164

Query  309  F---------YHREHVTKTQILCAERRLLALFDDRKNELA------------HLATHGPE  347
                       H+  +    +    RR+   F      +                    E
Sbjct  165  IEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQE  224

Query  348  NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG  407
              K ++L ++L  Q    +    I+F RT++    L   L               L G  
Sbjct  225  KKKFDVLTRLLDIQ----SPELAIVFGRTKRRVDELSEALN--------------LRGYA  266

Query  408  NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
                   +TQ  +  V++KF++G++ +LVAT VA  GLDI     V  + +  +  S V 
Sbjct  267  AEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVH  326

Query  468  ARGR-ARADQSVYA--FVATEGSRELK------RELINEALETLMEQAVAAVQKMDQAEY  518
              GR  RA +   A  FV    S +LK      +  ++      +++A+   Q++   + 
Sbjct  327  RIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKL  386

Query  519  QAKIRDLQQAALTKRAAQAAQREN  542
            Q+ I + +  A  KR A+    EN
Sbjct  387  QSTIEN-ENLAYYKRIAEEMLEEN  409


 Score = 50.2 bits (118),  Expect = 5e-05, Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 51/129 (40%), Gaps = 6/129 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLET-VDGAKVVVLVNRVHLVTQHGE  65
            Q E I  AL+GK+II    TG GKT A        ++T  +  + +V+     L  Q GE
Sbjct  29   QAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGE  88

Query  66   EFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
            E  ++    R  +  + G          L +   +++ T   +   +        + L  
Sbjct  89   ELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINRKT----LRLQN  144

Query  125  FSLIVVDEC  133
               +V+DE 
Sbjct  145  VETVVLDEA  153


>sp|Q4IFI0|RRP3_GIBZE ATP-dependent rRNA helicase RRP3 OS=Gibberella 
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / 
NRRL 31084 / PH-1) OX=229533 GN=RRP3 PE=3 SV=1
Length=486

 Score = 135 bits (339),  Expect = 2e-32, Method: Composition-based stats.
 Identities = 72/402 (18%), Positives = 137/402 (34%), Gaps = 49/402 (12%)

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
            +P    +  +      ++ L     T    +     P LQ    +P   + L    +++ 
Sbjct  84   TPIQEKSIPVALQGRDIIGLAE---TGSGKTAAFALPVLQALLDKPQPLFGLVLAPTRE-  139

Query  229  FGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN  288
                + +  + +   L     +   G      Q + L +   +      R+   HL +  
Sbjct  140  LATQIGQAFEAL-GSLISLRCAVIVGGLDMVPQAIALGKKPHIVVATPGRLVD-HLEKTK  197

Query  289  DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFD----DRKNELAHLATH  344
               L       +D    L D      + K        R   LF      +   L   +  
Sbjct  198  GFSLRTLKYLIMDEADRLLDMDFGPSIDKILKFVPRERRTYLFSATISSKIESLQRASLR  257

Query  345  GPE-----NPKLEMLEKILQRQFSSSNSPR---------------GIIFTRTRQSAHSLL  384
             P      + K + +  +LQ      +  +                I+FTRT      + 
Sbjct  258  DPVKVSISSNKYQTVSTLLQNYLFIPHPQKDVHLIYLINEHAGQSTIVFTRTVWETQRVS  317

Query  385  LWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEG  444
            + L+               +G G       ++Q  +   + KF+ GT ++LVAT VA  G
Sbjct  318  ILLRT--------------LGFGAIPLHGQLSQSSRLGALNKFRSGTRDILVATDVAARG  363

Query  445  LDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETL  502
            LDIP  +VV+ Y L  +  + +   GR ARA +S  A  + T+   E+   +     + L
Sbjct  364  LDIPSVDVVLNYDLPQDSKTYIHRVGRTARAGKSGVAISLVTQYDLEIYLRIEAALGKKL  423

Query  503  MEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQR  544
             E      + M    +Q+++ + Q+ A  +  +   +R  + 
Sbjct  424  AEYPTEKEEVMA---FQSRVEEAQRIARIEMKSFTEERGKKG  462


 Score = 59.4 bits (142),  Expect = 6e-08, Method: Composition-based stats.
 Identities = 67/423 (16%), Positives = 131/423 (31%), Gaps = 31/423 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQ--H  63
            Q + I  AL+G++II    TG+GKT A A  V +  L+       +VL     L TQ   
Sbjct  87   QEKSIPVALQGRDIIGLAETGSGKTAAFALPVLQALLDKPQPLFGLVLAPTRELATQIGQ  146

Query  64   G-EEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
              E    ++  R  V     DM P+A    L +   +++ T   L   L   +      L
Sbjct  147  AFEALGSLISLRCAVIVGGLDMVPQAI--ALGKKPHIVVATPGRLVDHLEKTKG---FSL  201

Query  123  TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAI  182
                 +++DE            I      +  +R   L      +A+  +   S    ++
Sbjct  202  RTLKYLIMDEADRLLDMDFGPSIDKILKFVPRERRTYL-----FSATISSKIESLQRASL  256

Query  183  NHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHD  242
               +++  ++ +    +              P K  +L +  ++      +      + +
Sbjct  257  RDPVKV--SISSNKYQTVSTLLQNYL-FIPHPQKDVHLIYLINEHAGQSTIV-FTRTVWE  312

Query  243  HLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDA  302
               +  L R  G         +LS+++ L  L + R     +    D       + +VD 
Sbjct  313  TQRVSILLRTLGFGA-IPLHGQLSQSSRLGALNKFRSGTRDILVATDVAARGLDIPSVDV  371

Query  303  LAAL---QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQ  359
            +      QD     H         +  +      + +   +L        KL        
Sbjct  372  VLNYDLPQDSKTYIHRVGRTARAGKSGVAISLVTQYDLEIYLRIEAALGKKLAE------  425

Query  360  RQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRD  419
                 +     + F    + A  +     +    +     + L  G G           D
Sbjct  426  ---YPTEKEEVMAFQSRVEEAQRIARIEMKSFTEERGKKGSTLKGGRGKKGGKRGRDDMD  482

Query  420  QQE  422
            ++E
Sbjct  483  REE  485


>sp|Q92841|DDX17_HUMAN Probable ATP-dependent RNA helicase DDX17 
OS=Homo sapiens OX=9606 GN=DDX17 PE=1 SV=2
Length=729

 Score = 137 bits (345),  Expect = 2e-32, Method: Composition-based stats.
 Identities = 73/416 (18%), Positives = 136/416 (33%), Gaps = 69/416 (17%)

Query  134  HHTHK-DTVYNVIM-SQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCAN  191
            HH +    V +V+M   + E    + Q  P  L L+     G A    G           
Sbjct  174  HHANFPQYVMDVLMDQHFTEPTPIQCQGFP--LALSGRDMVGIAQTGSG-----------  220

Query  192  LDTWCIMSPQNCCPQLQEHSQQP-CKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELS  250
                   +     P +   + QP  ++ +        P  +L +++     D+ +   L 
Sbjct  221  ------KTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLK  274

Query  251  RK--FGTQMYEQQVVKLSEAAALAGLQEQRVYAL------HLRRYNDALLIHDTVRAVD-  301
                +G      Q+  L     +      R+         +LRR    L++ +  R +D 
Sbjct  275  STCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRC-TYLVLDEADRMLDM  333

Query  302  ----ALAALQDFYHREHVTKTQILCAERRLLALFDDR----------------KNELAHL  341
                 +  + D    +  T        + +  L +D                  + +  +
Sbjct  334  GFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQI  393

Query  342  ATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQ  401
                 E+ K   L + L  +  +    + IIF  T++    L   +++            
Sbjct  394  VDVCMESEKDHKLIQ-LMEEIMAEKENKTIIFVETKRRCDDLTRRMRRD-----------  441

Query  402  LLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN  461
               G          +Q ++  V+ +F+ G   +L+AT VA  GLD+     V+ Y    +
Sbjct  442  ---GWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNS  498

Query  462  EISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQ  515
                V   GR AR+     A+   T G+ +  RELI    E         +Q +D 
Sbjct  499  SEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKLMQLVDH  554


 Score = 47.1 bits (110),  Expect = 5e-04, Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 49/136 (36%), Gaps = 11/136 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA----AAYVAKR--HLETVDGAKVVVLVNRVHLV  60
            Q +    AL G++++    TG+GKT A    A        +LE  DG   +VL     L 
Sbjct  198  QCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELA  257

Query  61   TQHGEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
             Q  +         R   T + G          L R  ++ I T   L   L S +    
Sbjct  258  QQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTN--  315

Query  120  VELTVFSLIVVDECHH  135
              L   + +V+DE   
Sbjct  316  --LRRCTYLVLDEADR  329


>sp|D0PV95|DDX3_CAEEL ATP-dependent RNA helicase laf-1 OS=Caenorhabditis 
elegans OX=6239 GN=laf-1 PE=1 SV=1
Length=708

 Score = 137 bits (345),  Expect = 2e-32, Method: Composition-based stats.
 Identities = 59/316 (19%), Positives = 114/316 (36%), Gaps = 58/316 (18%)

Query  227  DPFGDLLKKLMDQIHDHLEMPELSRKF---GTQMYEQQVVKLSEAAALAGLQEQRVYALH  283
             P  +L  ++ ++         ++      G + Y+ Q+ KL     +      R+  + 
Sbjct  322  SPTRELSLQIFNESRKFAYRTPITSALLYGGRENYKDQIHKLRLGCHILIATPGRLIDVM  381

Query  284  LRRYND-----ALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNEL  338
             +          L++ +  R +D     Q    R+ V   ++   E R+ A+F     + 
Sbjct  382  DQGLIGMEGCRYLVLDEADRMLDMGFEPQ---IRQIVECNRMPSKEERITAMFSATFPKE  438

Query  339  AHLATHG----------------------------PENPKLEMLEKILQRQFSSSNSPRG  370
              L                                 E+ K   L  +L    ++ +S   
Sbjct  439  IQLLAQDFLKENYVFLAVGRVGSTSENIMQKIVWVEEDEKRSYLMDLLD---ATGDSSLT  495

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            ++F  T++ A  L  +L +Q                   +    + Q ++++ +  F+ G
Sbjct  496  LVFVETKRGASDLAYYLNRQN--------------YEVVTIHGDLKQFEREKHLDLFRTG  541

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSR  488
            T  +LVAT+VA  GLDIP+   V+ Y L ++    V   GR  R      A     + +R
Sbjct  542  TAPILVATAVAARGLDIPNVKHVINYDLPSDVDEYVHRIGRTGRVGNVGLATSFFNDKNR  601

Query  489  ELKRELINEALETLME  504
             + REL++  +E   E
Sbjct  602  NIARELMDLIVEANQE  617


>sp|Q73EU1|CSHA_BACC1 DEAD-box ATP-dependent RNA helicase CshA 
OS=Bacillus cereus (strain ATCC 10987 / NRS 248) OX=222523 
GN=cshA PE=3 SV=1
Length=525

 Score = 135 bits (340),  Expect = 2e-32, Method: Composition-based stats.
 Identities = 66/324 (20%), Positives = 118/324 (36%), Gaps = 53/324 (16%)

Query  253  FGTQMYEQQVVKLSEAAALAGLQEQRVYA----LHLRRYNDALLIHDTVRAVDALAALQD  308
            +G Q   +Q+  L +   +      R+        LR  N   ++ D    +  +  ++D
Sbjct  105  YGGQDINRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIED  164

Query  309  F---------YHREHVTKTQILCAERRLLALFDDRKNELA------------HLATHGPE  347
                       H+  +    +    RR+   F      +                    E
Sbjct  165  IEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQE  224

Query  348  NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG  407
              K ++L ++L  Q    +    I+F RT++    L   L               L G  
Sbjct  225  KKKFDVLTRLLDIQ----SPELAIVFGRTKRRVDELSEALN--------------LRGYA  266

Query  408  NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
                   +TQ  +  V++KF++G++ +LVAT VA  GLDI     V  + +  +  S V 
Sbjct  267  AEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVH  326

Query  468  ARGR-ARADQSVYA--FVATEGSRELK------RELINEALETLMEQAVAAVQKMDQAEY  518
              GR  RA +   A  FV    S +LK      +  ++      +++A+   Q++   + 
Sbjct  327  RIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKL  386

Query  519  QAKIRDLQQAALTKRAAQAAQREN  542
            Q  I + +  A  KR A+    EN
Sbjct  387  QNTIEN-ENLAYYKRIAEEMLEEN  409


 Score = 50.6 bits (119),  Expect = 4e-05, Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 51/129 (40%), Gaps = 6/129 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLET-VDGAKVVVLVNRVHLVTQHGE  65
            Q E I  AL+GK+II    TG GKT A        ++T  +  + +V+     L  Q GE
Sbjct  29   QAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGE  88

Query  66   EFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
            E  ++    R  +  + G          L +   +++ T   +   +        + L  
Sbjct  89   ELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINRKT----LRLQN  144

Query  125  FSLIVVDEC  133
               +V+DE 
Sbjct  145  VETVVLDEA  153


>sp|Q63GX5|CSHA_BACCZ DEAD-box ATP-dependent RNA helicase CshA 
OS=Bacillus cereus (strain ZK / E33L) OX=288681 GN=cshA PE=3 
SV=1
Length=528

 Score = 135 bits (340),  Expect = 2e-32, Method: Composition-based stats.
 Identities = 66/324 (20%), Positives = 119/324 (37%), Gaps = 53/324 (16%)

Query  253  FGTQMYEQQVVKLSEAAALAGLQEQRVYA----LHLRRYNDALLIHDTVRAVDALAALQD  308
            +G Q   +Q+  L +   +      R+        LR  N   ++ D    +  +  ++D
Sbjct  105  YGGQDINRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIED  164

Query  309  F---------YHREHVTKTQILCAERRLLALFDDRKNELA------------HLATHGPE  347
                       H+  +    +    RR+   F      +                    E
Sbjct  165  IEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQE  224

Query  348  NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG  407
              K ++L ++L  Q    +    I+F RT++    L   L               L G  
Sbjct  225  KKKFDVLTRLLDIQ----SPELAIVFGRTKRRVDELSEALN--------------LRGYA  266

Query  408  NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
                   +TQ  +  V++KF++G++ +LVAT VA  GLDI     V  + +  +  S V 
Sbjct  267  AEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVH  326

Query  468  ARGR-ARADQSVYA--FVATEGSRELK------RELINEALETLMEQAVAAVQKMDQAEY  518
              GR  RA +   A  FV    S +LK      +  ++      +++A+   Q++   + 
Sbjct  327  RIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKL  386

Query  519  QAKIRDLQQAALTKRAAQAAQREN  542
            Q+ I + +  A  KR A+    EN
Sbjct  387  QSTIEN-ENLAYYKRIAEEMLEEN  409


 Score = 50.2 bits (118),  Expect = 5e-05, Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 51/129 (40%), Gaps = 6/129 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLET-VDGAKVVVLVNRVHLVTQHGE  65
            Q E I  AL+GK+II    TG GKT A        ++T  +  + +V+     L  Q GE
Sbjct  29   QAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGE  88

Query  66   EFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
            E  ++    R  +  + G          L +   +++ T   +   +        + L  
Sbjct  89   ELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINRKT----LRLQN  144

Query  125  FSLIVVDEC  133
               +V+DE 
Sbjct  145  VETVVLDEA  153


>sp|O15523|DDX3Y_HUMAN ATP-dependent RNA helicase DDX3Y OS=Homo 
sapiens OX=9606 GN=DDX3Y PE=1 SV=2
Length=660

 Score = 137 bits (344),  Expect = 2e-32, Method: Composition-based stats.
 Identities = 58/283 (20%), Positives = 104/283 (37%), Gaps = 48/283 (17%)

Query  253  FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND-----ALLIHDTVRAVDALAALQ  307
            +G     QQ+  L     L      R+  +  R          L++ +  R +D     Q
Sbjct  299  YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ  358

Query  308  DFYHREHVTKTQILCAERRLLALFDD-RKNELAHLA-----------------THGPENP  349
                R  V +  +     R   +F      E+  LA                 T      
Sbjct  359  ---IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQ  415

Query  350  KLEMLEKILQRQF------SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLL  403
            K+  +E + +R F      ++ +    ++F  T++ A SL  +L  +             
Sbjct  416  KVVWVEDLDKRSFLLDILGATGSDSLTLVFVETKKGADSLEDFLYHE-------------  462

Query  404  IGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI  463
             G   +S     +QRD++E + +F+ G   +LVAT+VA  GLDI +   V+ + L ++  
Sbjct  463  -GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIE  521

Query  464  SMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLME  504
              V   GR  R      A     E +  + ++L++  +E   E
Sbjct  522  EYVHRIGRTGRVGNLGLATSFFNEKNMNITKDLLDLLVEAKQE  564


 Score = 45.2 bits (105),  Expect = 0.002, Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 43/139 (31%), Gaps = 24/139 (17%)

Query  17   GKNIIIWLPTGAGKT---------RA-------AAYVAKRHLETVDGAK---VVVLVNRV  57
             ++++    TG+GKT         +        A    K +       +    +VL    
Sbjct  215  KRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTR  274

Query  58   HLVTQHGEEFRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE  116
             L  Q  EE R+     R     + G          L R   LL+ T   L   +    E
Sbjct  275  ELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMM----E  330

Query  117  EEHVELTVFSLIVVDECHH  135
               + L     +V+DE   
Sbjct  331  RGKIGLDFCKYLVLDEADR  349


>sp|Q6CIV2|DBP2_KLULA ATP-dependent RNA helicase DBP2 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 
1267 / NRRL Y-1140 / WM37) OX=284590 GN=DBP2 PE=3 SV=1
Length=554

 Score = 136 bits (341),  Expect = 2e-32, Method: Composition-based stats.
 Identities = 59/299 (20%), Positives = 105/299 (35%), Gaps = 52/299 (17%)

Query  253  FGTQMYEQQVVKLSEAAALAGLQEQRVY------ALHLRRYNDALLIHDTVRAVDALAAL  306
            +G     QQ+  L     +      R+         +L+R    L++ +  R +D     
Sbjct  221  YGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTNLKR-VTYLVLDEADRMLDMGFEP  279

Query  307  QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGP--------------------  346
            Q    R+ V + +         A +     +LA    H P                    
Sbjct  280  Q---IRKIVDQIRPDRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIV  336

Query  347  ----ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL  402
                +  K + L K L    S     + IIF  T+++   +  +L+ +            
Sbjct  337  EVLTDFEKRDRLAKHL-ETASQDQDSKIIIFASTKRTCDEITSYLRTE------------  383

Query  403  LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE  462
              G    +      Q ++  V+ +F+ G   ++VAT VA  G+D+   N V+ Y +  N 
Sbjct  384  --GWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGIDVKGINYVINYDMPGNI  441

Query  463  ISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQ  519
               V   GR  RA  +  A    TEG++ L   LI    E   +     +++ D+ +Y 
Sbjct  442  EDYVHRIGRTGRAGSTGTAISFFTEGNKSLGAALIKIMREA-KQDIPEELRRYDRGQYG  499


 Score = 55.2 bits (131),  Expect = 1e-06, Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 49/129 (38%), Gaps = 11/129 (9%)

Query  14   ALEGKNIIIWLPTGAGKTR------AAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEF  67
            AL G+++I    TG+GKT            A+  L   DG  V+VL     L  Q  +E 
Sbjct  147  ALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQKEC  206

Query  68   RRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS  126
             +     R   T + G +        L R  ++LI T   L   L    E     L   +
Sbjct  207  SKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDML----EIGKTNLKRVT  262

Query  127  LIVVDECHH  135
             +V+DE   
Sbjct  263  YLVLDEADR  271


>sp|Q59LU0|DBP2_CANAL ATP-dependent RNA helicase DBP2 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DBP2 
PE=3 SV=2
Length=562

 Score = 135 bits (340),  Expect = 2e-32, Method: Composition-based stats.
 Identities = 65/390 (17%), Positives = 131/390 (34%), Gaps = 58/390 (15%)

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQY-NLCHRRSQD  227
            +P       +  +   ++ + A   T    +   C P +   + QP  QY +        
Sbjct  151  TPIQCQGWPMALSGRDMIGIAA---TGSGKTLSYCLPSIVHINAQPQLQYGDGPIVLVLA  207

Query  228  PFGDLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEAAALAGLQEQRVY-----  280
            P  +L  ++  +     +   +     +G      Q+  L+    +      R+      
Sbjct  208  PTRELAVQIQTECSKFGKSSRIRNTCVYGGAPKGPQIRDLARGVEICIATPGRLIDMLEA  267

Query  281  -ALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELA  339
               +L+R    L++ +  R +D     Q    R+ V + +         A +     +L 
Sbjct  268  GKTNLKR-VTYLVLDEADRMLDMGFEPQ---IRKIVDQIRPDRQTLMWSATWPKEVQQLT  323

Query  340  HLATHGP------------------------ENPKLEMLEKILQRQFSSSNSPRGIIFTR  375
                + P                        E  K + L K L+    +    + ++F  
Sbjct  324  RDYLNDPIQVTIGSLELAASHTITQLVEVIDEFSKRDRLVKHLESAL-NEKDNKILVFAS  382

Query  376  TRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLL  435
            T+++   +  +L+                G    +      Q ++  V+ +F+ G  +++
Sbjct  383  TKRTCDEITTYLRSD--------------GWPALAIHGDKEQNERDWVLDEFRKGKTSIM  428

Query  436  VATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRE  493
            VAT VA  G+D+     V+ Y +  N    V   GR  R   S  A    TEG+ +L  +
Sbjct  429  VATDVAARGIDVKGITHVINYDMPGNIEDYVHRIGRTGRGGASGTAISFFTEGNSKLGGD  488

Query  494  LINEALETLMEQAVAAVQKMDQAEYQAKIR  523
            L     E         +Q+ D+  Y + +R
Sbjct  489  LCKIMREANQ-TVPPELQRFDRRSYGSHMR  517


 Score = 52.5 bits (124),  Expect = 1e-05, Method: Composition-based stats.
 Identities = 33/129 (26%), Positives = 50/129 (39%), Gaps = 11/129 (9%)

Query  14   ALEGKNIIIWLPTGAGKTRAAAYVAKRH------LETVDGAKVVVLVNRVHLVTQHGEEF  67
            AL G+++I    TG+GKT +    +  H      L+  DG  V+VL     L  Q   E 
Sbjct  161  ALSGRDMIGIAATGSGKTLSYCLPSIVHINAQPQLQYGDGPIVLVLAPTRELAVQIQTEC  220

Query  68   RRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS  126
             +     R   T + G          LAR  ++ I T   L   L + +      L   +
Sbjct  221  SKFGKSSRIRNTCVYGGAPKGPQIRDLARGVEICIATPGRLIDMLEAGKTN----LKRVT  276

Query  127  LIVVDECHH  135
             +V+DE   
Sbjct  277  YLVLDEADR  285


>sp|Q5RF43|DDX3Y_PONAB ATP-dependent RNA helicase DDX3Y OS=Pongo 
abelii OX=9601 GN=DDX3Y PE=2 SV=1
Length=658

 Score = 136 bits (342),  Expect = 3e-32, Method: Composition-based stats.
 Identities = 58/283 (20%), Positives = 103/283 (36%), Gaps = 48/283 (17%)

Query  253  FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND-----ALLIHDTVRAVDALAALQ  307
            +G     QQ+  L     L      R+  +  R          L++ +  R +D     Q
Sbjct  299  YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ  358

Query  308  DFYHREHVTKTQILCAERRLLALFDD-RKNELAHLA-----------------THGPENP  349
                R  V +  +     R   +F      E+  LA                 T      
Sbjct  359  ---IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQ  415

Query  350  KLEMLEKILQRQF------SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLL  403
            K+  +E + +R F      ++      ++F  T++ A SL  +L  +             
Sbjct  416  KVVWVEDLDKRSFLLDLLGATGRDSLTLVFVETKKGADSLEDFLYHE-------------  462

Query  404  IGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI  463
             G   +S     +QRD++E + +F+ G   +LVAT+VA  GLDI +   V+ + L ++  
Sbjct  463  -GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIE  521

Query  464  SMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLME  504
              V   GR  R      A     E +  + ++L++  +E   E
Sbjct  522  EYVHRIGRTGRVGNLGLATSFFNEKNMNITKDLLDLLVEAKQE  564


 Score = 45.2 bits (105),  Expect = 0.002, Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 43/139 (31%), Gaps = 24/139 (17%)

Query  17   GKNIIIWLPTGAGKT---------RA-------AAYVAKRHLETVDGAK---VVVLVNRV  57
             ++++    TG+GKT         +        A    K +       +    +VL    
Sbjct  215  KRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTR  274

Query  58   HLVTQHGEEFRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE  116
             L  Q  EE R+     R     + G          L R   LL+ T   L   +    E
Sbjct  275  ELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMM----E  330

Query  117  EEHVELTVFSLIVVDECHH  135
               + L     +V+DE   
Sbjct  331  RGKIGLDFCKYLVLDEADR  349


>sp|Q6GVM6|DDX3Y_PANTR ATP-dependent RNA helicase DDX3Y OS=Pan 
troglodytes OX=9598 GN=DDX3Y PE=2 SV=1
Length=660

 Score = 136 bits (342),  Expect = 3e-32, Method: Composition-based stats.
 Identities = 58/283 (20%), Positives = 103/283 (36%), Gaps = 48/283 (17%)

Query  253  FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND-----ALLIHDTVRAVDALAALQ  307
            +G     QQ+  L     L      R+  +  R          L++ +  R +D     Q
Sbjct  299  YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ  358

Query  308  DFYHREHVTKTQILCAERRLLALFDD-RKNELAHLA-----------------THGPENP  349
                R  V +  +     R   +F      E+  LA                 T      
Sbjct  359  ---IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQ  415

Query  350  KLEMLEKILQRQF------SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLL  403
            K+  +E + +R F      ++      ++F  T++ A SL  +L  +             
Sbjct  416  KVVWVEDLDKRSFLLDILGAAGTDSLTLVFVETKKGADSLEDFLYHE-------------  462

Query  404  IGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI  463
             G   +S     +QRD++E + +F+ G   +LVAT+VA  GLDI +   V+ + L ++  
Sbjct  463  -GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIE  521

Query  464  SMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLME  504
              V   GR  R      A     E +  + ++L++  +E   E
Sbjct  522  EYVHRIGRTGRVGNLGLATSFFNEKNINITKDLLDLLVEAKQE  564


 Score = 45.2 bits (105),  Expect = 0.002, Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 43/139 (31%), Gaps = 24/139 (17%)

Query  17   GKNIIIWLPTGAGKT---------RA-------AAYVAKRHLETVDGAK---VVVLVNRV  57
             ++++    TG+GKT         +        A    K +       +    +VL    
Sbjct  215  KRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTR  274

Query  58   HLVTQHGEEFRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE  116
             L  Q  EE R+     R     + G          L R   LL+ T   L   +    E
Sbjct  275  ELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMM----E  330

Query  117  EEHVELTVFSLIVVDECHH  135
               + L     +V+DE   
Sbjct  331  RGKIGLDFCKYLVLDEADR  349


>sp|Q0DB53|RH52A_ORYSJ DEAD-box ATP-dependent RNA helicase 52A 
OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0602400 PE=2 
SV=2
Length=602

 Score = 136 bits (341),  Expect = 3e-32, Method: Composition-based stats.
 Identities = 64/312 (21%), Positives = 110/312 (35%), Gaps = 56/312 (18%)

Query  247  PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND-----ALLIHDTVRAVD  301
              +   +G      Q+  L   A +      R+  +  R          L++ +  R +D
Sbjct  197  LRVVVAYGGTPMYNQLRDLERGADILVATPGRLVDMVERSKVSLEAIKYLVMDEADRMLD  256

Query  302  ALAALQDFYHREHVTKTQILCAERRLLALFDD-RKNELAHLATHGPEN------------  348
                 Q    R+ V +  +     R   LF      E+  LA+    N            
Sbjct  257  MGFEPQ---IRKIVERMNMPRKSVRQTMLFSATFPPEIQRLASDFLSNYIFITVGRVGSS  313

Query  349  -----PKLE---------MLEKILQRQFSSSNSPR-----GIIFTRTRQSAHSLLLWLQQ  389
                  K+E          L  +LQRQ     + +      ++F  T++ A SL  WL  
Sbjct  314  TDLIMQKVELLSDGEKRGYLLDLLQRQSVGVANSKLQQPLTLVFVETKREADSLRYWLYS  373

Query  390  QQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPH  449
            +              G   ++     TQ++++  ++ F+ G   ++VAT VA  GLD+P+
Sbjct  374  K--------------GFPATAIHGDRTQQERESALRSFKTGLTPIMVATDVASRGLDVPN  419

Query  450  CNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAV  507
               V+ Y L  +    V   GR  RA ++  A    TE    L + L+    E   +   
Sbjct  420  VAHVINYDLPKSIEDYVHRIGRTGRAGKAGSATAFFTESDHSLAKGLLELMTEAKQDVPD  479

Query  508  AAVQKMDQAEYQ  519
              VQ  ++  Y 
Sbjct  480  WLVQYAERPYYG  491


 Score = 47.1 bits (110),  Expect = 4e-04, Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 50/141 (35%), Gaps = 24/141 (17%)

Query  14   ALEGKNIIIWLPTGAGKT----------RAAA---YVAKRHLETVDGA----KVVVLVNR  56
            AL G++++    TG+GKT            AA    +  R   + + A    + +VL   
Sbjct  118  ALAGRDLMACAQTGSGKTAAFCLPVVSGLVAAGGSGIGHRERSSFNRAAAKPRALVLAPT  177

Query  57   VHLVTQHGEEFRRML--DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP  114
              L  Q  EE ++     G   V    G          L R  D+L+ T   L   +   
Sbjct  178  RELAAQINEEAKKFSFQTGLRVVVAYGGTPMYNQLRD-LERGADILVATPGRLVDMV---  233

Query  115  EEEEHVELTVFSLIVVDECHH  135
             E   V L     +V+DE   
Sbjct  234  -ERSKVSLEAIKYLVMDEADR  253


>sp|P57453|DEAD_BUCAI ATP-dependent RNA helicase DeaD OS=Buchnera 
aphidicola subsp. Acyrthosiphon pisum (strain APS) OX=107806 
GN=deaD PE=3 SV=1
Length=601

 Score = 135 bits (340),  Expect = 3e-32, Method: Composition-based stats.
 Identities = 62/328 (19%), Positives = 125/328 (38%), Gaps = 43/328 (13%)

Query  207  LQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLS  266
            L  +     K   +            + +       ++    +   +G Q YE Q+  L 
Sbjct  64   LLHNLNINLKAPQILVLAPTRELAVQVAEAFSDFSKYMIGIHVLPLYGGQRYELQLRALR  123

Query  267  EAAALAGLQEQRVYALHLRRY-----NDALLIHDTVRAVDALAALQD---------FYHR  312
            +   +      R+   HL+R      N   L+ D    +  +  ++D           H+
Sbjct  124  QGPQIVVGTPGRLLD-HLKRGTLNLSNLHGLVLDEADEMLRMGFIEDVETIMAQIPKEHQ  182

Query  313  EHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLE--------MLEKILQRQFSS  364
              +    +  A RR+   F     E+  + ++    P ++             L R   +
Sbjct  183  TALFSATMPEAIRRISKRFMRNPKEIK-IQSNITTRPDIKQSYWMVYGRKTDALIRFLEA  241

Query  365  SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI  424
             +    IIF RT+ +   +   L++               G  +++ +  M Q  +++ +
Sbjct  242  EDFSATIIFVRTKNATLEVSEALERN--------------GYNSAALNGDMNQALREQTL  287

Query  425  QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVA  483
            ++ ++G L++L+AT VA  GLD+   + V+ Y +  +  S V   GR  RA ++  A + 
Sbjct  288  ERLKNGRLDILIATDVAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRAGRALLF  347

Query  484  TEGSRELKRELINEALETLMEQAVAAVQ  511
             E     +R L N  +E  M+Q++  VQ
Sbjct  348  VENRE--RRLLRN--IERTMKQSIPEVQ  371


 Score = 53.6 bits (127),  Expect = 4e-06, Method: Composition-based stats.
 Identities = 28/122 (23%), Positives = 47/122 (39%), Gaps = 7/122 (6%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGEEFRRMLD-  72
            LEG++++    TG+GKT A +     +L     A +++VL     L  Q  E F      
Sbjct  41   LEGRDVLGMAQTGSGKTAAFSLPLLHNLNINLKAPQILVLAPTRELAVQVAEAFSDFSKY  100

Query  73   -GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVD  131
                 V  L G          L +   +++ T   L   L    +   + L+    +V+D
Sbjct  101  MIGIHVLPLYGGQRYELQLRALRQGPQIVVGTPGRLLDHL----KRGTLNLSNLHGLVLD  156

Query  132  EC  133
            E 
Sbjct  157  EA  158


>sp|Q0UK12|RRP3_PHANO ATP-dependent rRNA helicase RRP3 OS=Phaeosphaeria 
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) 
OX=321614 GN=RRP3 PE=3 SV=2
Length=546

 Score = 134 bits (338),  Expect = 3e-32, Method: Composition-based stats.
 Identities = 80/405 (20%), Positives = 145/405 (36%), Gaps = 54/405 (13%)

Query  167  TASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQ  226
            TA+P    +  L  A   ++ L     T    +     P LQ    +P   + L      
Sbjct  137  TATPIQTESIPLALAGKDIIGLAE---TGSGKTAAFVLPILQALLDKPQAYFGLIMA---  190

Query  227  DPFGDLLKKLMDQIHDHLEMPELS--RKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHL  284
             P  +L  ++  Q+     +  +      G      Q + LS+   +      R+   HL
Sbjct  191  -PTRELAYQISQQVDALGSIINVKCATLVGGMDMVPQAIALSKRPHIIVASPGRLLD-HL  248

Query  285  RRYNDALLIHDTVRAVDALAALQDFYHREHVTK-TQILCAERRLLALFD----DRKNELA  339
                   L H     +D    L D    + + K  ++L  + R   LF      +   L 
Sbjct  249  ENTKGFSLKHLKYLVLDEADRLLDLDFGDSLDKIFKVLPRDDRHTYLFSATMSSKVESLQ  308

Query  340  HLATHGPE--------NPKLEMLEK------------ILQRQFSSSNSPRGIIFTRTRQS  379
              A   P         +  +  L +             L    + +     I+FTRT   
Sbjct  309  RAALKNPVRVSISSSSHQVVSTLLQSYMLIPHKYKDLYLIHLLNDNIGHATILFTRTVNE  368

Query  380  AHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATS  439
               L + L+               +G         ++Q ++   + KF+    ++LVAT 
Sbjct  369  TQRLAVLLRT--------------LGFQALPLHGQLSQSNRLGALNKFKAKARDILVATD  414

Query  440  VAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINE  497
            VA  GLDIP  ++VV + L  +  + V   GR ARA +S  A    T+   E+ + + + 
Sbjct  415  VAARGLDIPSVDLVVNFDLPHDSETYVHRVGRTARAGKSGKAVSFVTQYDLEIFQRIEHA  474

Query  498  ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQREN  542
              + + E+ V+  + M    Y  ++ + Q+ A+ +      QR++
Sbjct  475  LGKQVPEEKVSRDEVM---VYAERVGEAQRVAVREMKDLHDQRKS  516


 Score = 61.7 bits (148),  Expect = 1e-08, Method: Composition-based stats.
 Identities = 59/389 (15%), Positives = 131/389 (34%), Gaps = 38/389 (10%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKV-VVLVNRVHL---VTQ  62
            Q E I  AL GK+II    TG+GKT A      + L     A   +++     L   ++Q
Sbjct  142  QTESIPLALAGKDIIGLAETGSGKTAAFVLPILQALLDKPQAYFGLIMAPTRELAYQISQ  201

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
              +    +++ +        DM P+A    L++   +++ +   L   L + +      L
Sbjct  202  QVDALGSIINVKCATLVGGMDMVPQAI--ALSKRPHIIVASPGRLLDHLENTKG---FSL  256

Query  123  TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQ-----VLGLTASPGTGGASK  177
                 +V+DE           ++   + +   +  + LP+      L  +A+  +   S 
Sbjct  257  KHLKYLVLDEADR--------LLDLDFGDSLDKIFKVLPRDDRHTYL-FSATMSSKVESL  307

Query  178  LDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLM  237
               A+ + +++     +    S Q     LQ +   P K  +L      +        L 
Sbjct  308  QRAALKNPVRV-----SISSSSHQVVSTLLQSYMLIPHKYKDLYLIHLLNDNIGHATILF  362

Query  238  DQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTV  297
             +  +  +   +  +           +LS++  L  L + +  A  +    D       +
Sbjct  363  TRTVNETQRLAVLLRTLGFQALPLHGQLSQSNRLGALNKFKAKARDILVATDVAARGLDI  422

Query  298  RAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKI  357
             +VD +       + +    ++         A        ++ +  +  E    + +E  
Sbjct  423  PSVDLV------VNFDLPHDSETYVHRVGRTARAGKSGKAVSFVTQYDLEI--FQRIEHA  474

Query  358  LQRQFSSSNSPR--GIIFTRTRQSAHSLL  384
            L +Q       R   +++      A  + 
Sbjct  475  LGKQVPEEKVSRDEVMVYAERVGEAQRVA  503


>sp|Q5GUR8|RHLB_XANOR ATP-dependent RNA helicase RhlB OS=Xanthomonas 
oryzae pv. oryzae (strain KACC10331 / KXO85) OX=291331 
GN=rhlB PE=3 SV=2
Length=574

 Score = 135 bits (339),  Expect = 4e-32, Method: Composition-based stats.
 Identities = 66/377 (18%), Positives = 118/377 (31%), Gaps = 58/377 (15%)

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
            S G    + +      V     ++              L     +   +  L  R+ +DP
Sbjct  26   SAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLNRPALADRKPEDP  85

Query  229  FGDLL---KKLMDQIH------DHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRV  279
               +L   ++L  QIH              +  +G   Y++Q   L +   +      R+
Sbjct  86   RALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRL  145

Query  280  YALHLRRYN------DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD  333
                 +         +  ++ +  R  D L  ++D          +         A    
Sbjct  146  IDYVKQHKVVSLHACEICVLDEADRMFD-LGFIKDIRFLLRRMPERGTRQTLLFSATLSH  204

Query  334  RKNELAHLATHGPE-------------------NPKLEMLEKILQRQFSSSNSPRGIIFT  374
            R  ELA+   + PE                    P  +  + +L    S S   R ++F 
Sbjct  205  RVLELAYEHMNEPEKLVVETETITAARVRQRIYFPSDDEKQTLLLGLLSRSEGARTMVFV  264

Query  375  RTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNL  434
             T+     +   L++               G      S  + Q+ ++ ++ +FQ G L +
Sbjct  265  NTKAFVERVARTLER--------------HGYRVGVLSGDVPQKKRESLLNRFQKGQLEI  310

Query  435  LVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSV--YAFVATEGSRELK  491
            LVAT VA  GL I     V  Y L  +    V   GR AR  +     +F     +  L 
Sbjct  311  LVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLP  370

Query  492  RELINEALETLMEQAVA  508
                   +E  +EQ + 
Sbjct  371  ------DIEAYIEQKIP  381


 Score = 49.8 bits (117),  Expect = 7e-05, Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 39/119 (33%), Gaps = 12/119 (10%)

Query  26   TGAGKT---RAAAY-VAKRHLETVDGA----KVVVLVNRVHLVTQ-HGEEFRRMLDGRWT  76
            TG GKT     A            D      + ++L     L  Q H +  +   D    
Sbjct  55   TGTGKTLAFLVAVMNRLLNRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLR  114

Query  77   VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH  135
               + G +        L +  D++I T   L   +   ++ + V L    + V+DE   
Sbjct  115  FALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYV---KQHKVVSLHACEICVLDEADR  170


>sp|A6QRQ7|RRP3_AJECN ATP-dependent rRNA helicase RRP3 OS=Ajellomyces 
capsulatus (strain NAm1 / WU24) OX=2059318 GN=RRP3 PE=3 
SV=1
Length=485

 Score = 134 bits (336),  Expect = 4e-32, Method: Composition-based stats.
 Identities = 74/402 (18%), Positives = 141/402 (35%), Gaps = 49/402 (12%)

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
            +P    +  L      ++ L     T    +     P LQ    +P   + L    +++ 
Sbjct  83   TPIQAESIPLALQGRDLIGLAE---TGSGKTAAFALPILQALMNKPQSLFGLILAPTRE-  138

Query  229  FGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN  288
                + +  + +   L     +   G      Q + L +   +      R+   HL    
Sbjct  139  LACQISEAFEAL-GSLISVRCAVIVGGMDMVSQAISLGKKPHIIVATPGRLLD-HLENTK  196

Query  289  DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFD----DRKNELAHLATH  344
               L       +D    L D      + K   +    R   LF      +   L   +  
Sbjct  197  GFSLRSLKYLVMDEADRLLDLDFGPILDKILKVLPRERRTYLFSATMSSKVESLQRASLS  256

Query  345  GPE-----NPKLEMLEKILQRQFSSSNSPR---------------GIIFTRTRQSAHSLL  384
             P      + K + +  +LQ      +  +                I+FTRT      L 
Sbjct  257  NPLRVSISSNKYQTVATLLQSYLFIPHKYKDIYLVYLLNEYAGQSAIVFTRTVNETQRLA  316

Query  385  LWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEG  444
            + L+               +G G+      ++Q  +   + KF+  + ++LVAT VA  G
Sbjct  317  ILLRA--------------LGFGSIPLHGQLSQSSRLGALSKFRSRSRDILVATDVAARG  362

Query  445  LDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETL  502
            LDIP  +VV+ + L ++  + +   GR ARA +S +AF + T+   E+   + N   + L
Sbjct  363  LDIPSVDVVLNFDLPSDSKTYIHRVGRTARAGKSGHAFSIVTQYDIEVWLRIENALGKKL  422

Query  503  MEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQR  544
             E  V   + M       ++ + Q+ A+T+      +R ++ 
Sbjct  423  DEYKVEKEEVM---VLSDRVGEAQRHAITEMKDLHEKRGSRG  461


 Score = 64.0 bits (154),  Expect = 2e-09, Method: Composition-based stats.
 Identities = 46/274 (17%), Positives = 99/274 (36%), Gaps = 15/274 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKV-VVLVNRVHLVTQHGE  65
            Q E I  AL+G+++I    TG+GKT A A    + L     +   ++L     L  Q  E
Sbjct  86   QAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMNKPQSLFGLILAPTRELACQISE  145

Query  66   EFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
             F  +          + G M   +    L +   +++ T   L   L + +      L  
Sbjct  146  AFEALGSLISVRCAVIVGGMDMVSQAISLGKKPHIIVATPGRLLDHLENTKG---FSLRS  202

Query  125  FSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINH  184
               +V+DE      D  +  I+ + L++  +  +        +A+  +   S    ++++
Sbjct  203  LKYLVMDEADRLL-DLDFGPILDKILKVLPRERRTYL----FSATMSSKVESLQRASLSN  257

Query  185  VLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHL  244
             L++     +      Q     LQ +   P K  ++      + +      +  +  +  
Sbjct  258  PLRV-----SISSNKYQTVATLLQSYLFIPHKYKDIYLVYLLNEYAGQSAIVFTRTVNET  312

Query  245  EMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQR  278
            +   +  +           +LS+++ L  L + R
Sbjct  313  QRLAILLRALGFGSIPLHGQLSQSSRLGALSKFR  346


>sp|O00571|DDX3X_HUMAN ATP-dependent RNA helicase DDX3X OS=Homo 
sapiens OX=9606 GN=DDX3X PE=1 SV=3
Length=662

 Score = 136 bits (341),  Expect = 4e-32, Method: Composition-based stats.
 Identities = 58/283 (20%), Positives = 103/283 (36%), Gaps = 48/283 (17%)

Query  253  FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND-----ALLIHDTVRAVDALAALQ  307
            +G     QQ+  L     L      R+  +  R          L++ +  R +D     Q
Sbjct  301  YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ  360

Query  308  DFYHREHVTKTQILCAERRLLALFDD-RKNELAHLA-----------------THGPENP  349
                R  V +  +     R   +F      E+  LA                 T      
Sbjct  361  ---IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQ  417

Query  350  KLEMLEKILQRQF------SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLL  403
            K+  +E+  +R F      ++      ++F  T++ A SL  +L  +             
Sbjct  418  KVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE-------------  464

Query  404  IGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI  463
             G   +S     +QRD++E + +F+ G   +LVAT+VA  GLDI +   V+ + L ++  
Sbjct  465  -GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIE  523

Query  464  SMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLME  504
              V   GR  R      A     E +  + ++L++  +E   E
Sbjct  524  EYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQE  566


 Score = 47.9 bits (112),  Expect = 3e-04, Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 46/149 (31%), Gaps = 24/149 (16%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT---------RA-------AAYVAKRHLETVDGAK-  49
            Q   I    E ++++    TG+GKT         +        A    K +       + 
Sbjct  207  QKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQY  266

Query  50   --VVVLVNRVHLVTQHGEEFRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAEL  106
               +VL     L  Q  EE R+     R     + G          L R   LL+ T   
Sbjct  267  PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGR  326

Query  107  LQMALTSPEEEEHVELTVFSLIVVDECHH  135
            L   +    E   + L     +V+DE   
Sbjct  327  LVDMM----ERGKIGLDFCKYLVLDEADR  351


>sp|P16381|DDX3L_MOUSE Putative ATP-dependent RNA helicase Pl10 
OS=Mus musculus OX=10090 GN=D1Pas1 PE=1 SV=1
Length=660

 Score = 136 bits (341),  Expect = 4e-32, Method: Composition-based stats.
 Identities = 58/283 (20%), Positives = 103/283 (36%), Gaps = 48/283 (17%)

Query  253  FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND-----ALLIHDTVRAVDALAALQ  307
            +G     QQ+  L     L      R+  +  R          L++ +  R +D     Q
Sbjct  300  YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ  359

Query  308  DFYHREHVTKTQILCAERRLLALFDD-RKNELAHLA-----------------THGPENP  349
                R  V +  +     R   +F      E+  LA                 T      
Sbjct  360  ---IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQ  416

Query  350  KLEMLEKILQRQF------SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLL  403
            K+  +E+  +R F      ++      ++F  T++ A SL  +L  +             
Sbjct  417  KVVWVEEADKRSFLLDLLNATGKDSLILVFVETKKGADSLEDFLYHE-------------  463

Query  404  IGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI  463
             G   +S     +QRD++E + +F+ G   +LVAT+VA  GLDI +   V+ + L ++  
Sbjct  464  -GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIE  522

Query  464  SMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLME  504
              V   GR  R      A     E +  + ++L++  +E   E
Sbjct  523  EYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQE  565


 Score = 47.1 bits (110),  Expect = 4e-04, Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 47/149 (32%), Gaps = 24/149 (16%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT---------RA-------AAYVAKRHLETVDGAK-  49
            Q   I    E ++++    TG+GKT         +        A    K + +     + 
Sbjct  206  QKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALRAMKENGKYGRRKQY  265

Query  50   --VVVLVNRVHLVTQHGEEFRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAEL  106
               +VL     L  Q  EE R+     R     + G          L R   LL+ T   
Sbjct  266  PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGR  325

Query  107  LQMALTSPEEEEHVELTVFSLIVVDECHH  135
            L   +    E   + L     +V+DE   
Sbjct  326  LVDMM----ERGKIGLDFCKYLVLDEADR  350


>sp|Q4WT99|PRP5_ASPFU Pre-mRNA-processing ATP-dependent RNA helicase 
prp5 OS=Aspergillus fumigatus (strain ATCC MYA-4609 / 
CBS 101355 / FGSC A1100 / Af293) OX=330879 GN=prp5 PE=3 SV=1
Length=1211

 Score = 137 bits (345),  Expect = 4e-32, Method: Composition-based stats.
 Identities = 67/368 (18%), Positives = 127/368 (35%), Gaps = 47/368 (13%)

Query  212  QQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAA  269
            Q+P +           P  +L  ++       L+   L     +G    + Q+ +L   A
Sbjct  640  QRPLENMEGPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAELKRGA  699

Query  270  ALAGLQEQRVYAL--------HLRRYNDALLIHDTVRAVD---------ALAALQDFYH-  311
             +      R+  L           R    +++ +  R  D          +A ++     
Sbjct  700  EIVVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRPDRQT  759

Query  312  ----------REHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQ  361
                       E + +  +      ++        E+  +     E+ K   L +IL   
Sbjct  760  VLFSATFPRNMEALARKSLTKPIEIVVGGKSVVAPEITQIVEVRNEDTKFVRLLEILGNL  819

Query  362  FSS--SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRD  419
            +S   +   R +IF   +++A +LL  L ++              G    S      Q D
Sbjct  820  YSDDANEDARALIFVDRQEAADTLLRELMRK--------------GYPCMSIHGGKDQID  865

Query  420  QQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSV  478
            +   I+ F+ G   +L+ATSVA  GLD+    +VV Y    +    V   GR  RA  + 
Sbjct  866  RDSTIEDFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTG  925

Query  479  YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA  538
             A       +E     I +AL    ++    VQKM  +  +      ++A+ +    +  
Sbjct  926  TAVTFLTEEQERYSVDIAKALRQSGQKVPEPVQKMVDSFLEKVKAGKEKASASGFGGKGL  985

Query  539  QRENQRQQ  546
            +R +Q + 
Sbjct  986  ERLDQERD  993


 Score = 60.6 bits (145),  Expect = 4e-08, Method: Composition-based stats.
 Identities = 61/388 (16%), Positives = 123/388 (32%), Gaps = 42/388 (11%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYV-AKRH------LETVDGAKVVVLVNRVHL  59
            Q + I   + G+++I    TG+GKT  A  +   RH      LE ++G   +++     L
Sbjct  602  QSQAIPAIMSGRDVIGVAKTGSGKT-IAFLIPMFRHIRDQRPLENMEGPIGLIMTPTREL  660

Query  60   VTQHGEEFRRMLDG--RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE  117
             TQ  ++ +  L       V    G          L R  ++++CT   +   L +    
Sbjct  661  ATQIHKDCKPFLKALNLRAVCAYGGAPIKDQI-AELKRGAEIVVCTPGRMIDLLAANAGR  719

Query  118  EHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS-PGTGGAS  176
                L   + +V+DE            +M     ++  R   L      +A+ P    A 
Sbjct  720  -VTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRPDRQTVL-----FSATFPRNMEAL  773

Query  177  KLDGAINHVL-----QLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYN---------LCH  222
                    +      +     +   I+  +N   +     +     Y+         L  
Sbjct  774  ARKSLTKPIEIVVGGKSVVAPEITQIVEVRNEDTKFVRLLEILGNLYSDDANEDARALIF  833

Query  223  RRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYAL  282
               Q+    LL++LM + +  + +     +       +      +A     L    V A 
Sbjct  834  VDRQEAADTLLRELMRKGYPCMSIHGGKDQIDRDSTIE----DFKAGIFPVLIATSVAAR  889

Query  283  HLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLA  342
             L      L+++      DA   L+D+ HR   T               +  +  +    
Sbjct  890  GLDVKQLKLVVN-----YDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEEQERYSVDIAK  944

Query  343  THGPENPKL-EMLEKILQRQFSSSNSPR  369
                   K+ E ++K++        + +
Sbjct  945  ALRQSGQKVPEPVQKMVDSFLEKVKAGK  972


>sp|Q4A127|HSDR_STAS1 Type I restriction enzyme SsaAORF53P endonuclease 
subunit OS=Staphylococcus saprophyticus subsp. saprophyticus 
(strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 
7292 / S-41) OX=342451 GN=hsdR PE=3 SV=1
Length=930

 Score = 136 bits (343),  Expect = 5e-32, Method: Composition-based stats.
 Identities = 42/185 (23%), Positives = 72/185 (39%), Gaps = 18/185 (10%)

Query  1    MELRSYQWEVIMPAL-----EGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVN  55
            M +R YQ   +   +        N  IW  TG+GKT  +   ++   E  D  KV+ LV+
Sbjct  239  MAMRPYQVHAVEALIHQATETSNNGYIWHTTGSGKTLTSFKASQVLSEQDDIKKVIFLVD  298

Query  56   RVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE  115
            R  L +Q  EEF +   G    T  +  +  +     L     L++ T + +  A+ +  
Sbjct  299  RKDLDSQTEEEFNKFSKGSVDKTNNTAQLVKQLKDKSLP----LIVTTIQKMSKAIQNNA  354

Query  116  EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGA  175
            E      T   + ++DECH +    ++ ++   +            Q  G T +P     
Sbjct  355  EALDQYKTDKVVFIIDECHRSQFGDMHRIVRQHFNN---------AQYFGFTGTPRFEEN  405

Query  176  SKLDG  180
               DG
Sbjct  406  QSQDG  410


>sp|Q1E1N5|RRP3_COCIM ATP-dependent rRNA helicase RRP3 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=RRP3 PE=3 SV=1
Length=474

 Score = 133 bits (335),  Expect = 5e-32, Method: Composition-based stats.
 Identities = 73/379 (19%), Positives = 129/379 (34%), Gaps = 48/379 (13%)

Query  193  DTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRK  252
            +T    +     P LQ    +P   + L       P  +L  ++  Q      +  +   
Sbjct  93   ETGSGKTAAFALPILQALMDKPQSMFGLVLA----PTRELAYQISQQFEALGSLISVRCA  148

Query  253  F--GTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFY  310
               G      Q + L +   +      R+   HL       L       +D    L D  
Sbjct  149  VIVGGMDMVSQAIALGKKPHIIVATPGRLLD-HLENTKGFSLRSLKYLVMDEADRLLDLD  207

Query  311  HREHVTKTQILCAERRLLALFD----DRKNELAHLATHGPE-----NPKLEMLEKILQRQ  361
                + K   +  + R   LF      +   L   +   P      + K + +  +LQ  
Sbjct  208  FGPILDKILKVLPKERRTYLFSATMSSKVESLQRASLSNPLRVSVSSNKYQTVSTLLQNC  267

Query  362  FSSSNSPR---------------GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA  406
                +  +                IIFTRT      L + L+               +G 
Sbjct  268  LIIPHKHKDIYLIYLLNEFPGQSVIIFTRTVNETQRLAILLRA--------------LGF  313

Query  407  GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV  466
            G       ++Q  +   + KF+  + N+LVAT VA  GLDIP  ++V+ Y L ++  + +
Sbjct  314  GAIPLHGQLSQSARLGALGKFRSRSRNILVATDVAARGLDIPSVDLVLNYDLPSDSKTYI  373

Query  467  QARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDL  525
               GR ARA +S  AF           + I  AL   +++    V+K +      ++ + 
Sbjct  374  HRVGRTARAGKSGRAFSLVTQYDVEIWQRIEAALGKELDEY--KVEKEEVMVLSDRVGEA  431

Query  526  QQAALTKRAAQAAQRENQR  544
            Q+ A+T+       R  + 
Sbjct  432  QRHAITEMKELHENRGKKG  450


 Score = 65.6 bits (158),  Expect = 8e-10, Method: Composition-based stats.
 Identities = 71/427 (17%), Positives = 145/427 (34%), Gaps = 42/427 (10%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHL---VTQ  62
            Q E I  AL+G+++I    TG+GKT A A  + +  ++       +VL     L   ++Q
Sbjct  75   QAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMDKPQSMFGLVLAPTRELAYQISQ  134

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
              E    ++  R  V     DM  +A    L +   +++ T   L   L + +      L
Sbjct  135  QFEALGSLISVRCAVIVGGMDMVSQAI--ALGKKPHIIVATPGRLLDHLENTKG---FSL  189

Query  123  TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAI  182
                 +V+DE      D  +  I+ + L++  +  +        +A+  +   S    ++
Sbjct  190  RSLKYLVMDEADRLL-DLDFGPILDKILKVLPKERRTYL----FSATMSSKVESLQRASL  244

Query  183  NHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHD  242
            ++ L++     +      Q     LQ     P K  ++      + F      +  +  +
Sbjct  245  SNPLRV-----SVSSNKYQTVSTLLQNCLIIPHKHKDIYLIYLLNEFPGQSVIIFTRTVN  299

Query  243  HLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDA  302
              +   +  +           +LS++A L  L + R  + ++    D       + +VD 
Sbjct  300  ETQRLAILLRALGFGAIPLHGQLSQSARLGALGKFRSRSRNILVATDVAARGLDIPSVDL  359

Query  303  LAAL------QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEK  356
            +         + + HR  V +T       R  +L      E+               L K
Sbjct  360  VLNYDLPSDSKTYIHR--VGRTARAGKSGRAFSLVTQYDVEIWQRIE--------AALGK  409

Query  357  ILQRQFSSSNSPRGIIFTRTRQSAHS--LLLW--LQQQQGLQTVDIRAQLLIGAGNSSQS  412
             L            ++ +     A    +     L + +G +   +R    IG G     
Sbjct  410  ELDEY--KVEKEEVMVLSDRVGEAQRHAITEMKELHENRGKKGATLR-NRRIGKGAKRSR  466

Query  413  THMTQRD  419
              M + +
Sbjct  467  DEMDREE  473


>sp|Q5BDW4|PRP5_EMENI Pre-mRNA-processing ATP-dependent RNA helicase 
prp5 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 
/ CBS 112.46 / NRRL 194 / M139) OX=227321 GN=prp5 PE=3 SV=1
Length=1173

 Score = 137 bits (344),  Expect = 5e-32, Method: Composition-based stats.
 Identities = 66/368 (18%), Positives = 128/368 (35%), Gaps = 47/368 (13%)

Query  212  QQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAA  269
            Q+P +           P  +L  ++       L+   L     +G    + Q+ +L   A
Sbjct  606  QRPLENMEGPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAELKRGA  665

Query  270  ALAGLQEQRVYAL--------HLRRYNDALLIHDTVRAVD---------ALAALQDFYH-  311
             +      R+  L           R    +++ +  R  D          L+ ++     
Sbjct  666  EIIVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILSNVRPDRQT  725

Query  312  ----------REHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQ  361
                       E + +  +      ++        E+  +     E  K   L ++L   
Sbjct  726  VLFSATFPRNMEALARKTLTKPIEIVVGGRSVVAPEITQIVEVCNEEKKFVRLLELLGNL  785

Query  362  FS--SSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRD  419
            +S   +   R +IF   +++A +LL  L ++              G    S      Q D
Sbjct  786  YSTDENEDARSLIFVDRQEAADTLLRELMRK--------------GYPCMSIHGGKDQID  831

Query  420  QQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSV  478
            +   I+ F+ G   +L+ATSVA  GLD+    +VV Y    +    V   GR  RA  + 
Sbjct  832  RDSTIEDFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTG  891

Query  479  YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA  538
             A       +E     I +AL+   ++   AVQK+  +  +      ++A+ +    +  
Sbjct  892  TAVTFLTEDQERYSVDIAKALKQSGQEVPEAVQKLVDSFLEKVKAGKEKASNSGFGGKGL  951

Query  539  QRENQRQQ  546
            +R +Q + 
Sbjct  952  ERLDQERD  959


 Score = 58.7 bits (140),  Expect = 1e-07, Method: Composition-based stats.
 Identities = 56/327 (17%), Positives = 110/327 (34%), Gaps = 35/327 (11%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYV-AKRH------LETVDGAKVVVLVNRVHL  59
            Q + I   + G+++I    TG+GKT  A  +   RH      LE ++G   +++     L
Sbjct  568  QAQAIPAIMSGRDVIGVAKTGSGKTM-AFLIPMFRHIKDQRPLENMEGPIGLIMTPTREL  626

Query  60   VTQHGEEFRRMLDG--RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE  117
             TQ  ++ +  L       V    G          L R  ++++CT   +   L +    
Sbjct  627  ATQIHKDCKPFLKALNLRAVCAYGGAPIKDQI-AELKRGAEIIVCTPGRMIDLLAANAGR  685

Query  118  EHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQ-----PLPQVLGLTASPGT  172
                L   + +V+DE            +M     ++  R         P+   + A    
Sbjct  686  -VTNLRRVTYVVLDEADRMFDMGFEPQVMKILSNVRPDRQTVLFSATFPR--NMEALARK  742

Query  173  GGASKLD---GAINHVLQLCANLDTWCIMSPQNCC-PQLQEH---SQQPCKQYNLCHRRS  225
                 ++   G  + V      +   C    +     +L  +   + +     +L     
Sbjct  743  TLTKPIEIVVGGRSVVAPEITQIVEVCNEEKKFVRLLELLGNLYSTDENEDARSLIFVDR  802

Query  226  QDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR  285
            Q+    LL++LM + +  + +     +       +      +A     L    V A  L 
Sbjct  803  QEAADTLLRELMRKGYPCMSIHGGKDQIDRDSTIE----DFKAGIFPVLIATSVAARGLD  858

Query  286  RYNDALLIHDTVRAVDALAALQDFYHR  312
                 L+++      DA   L+D+ HR
Sbjct  859  VKQLKLVVN-----YDAPNHLEDYVHR  880


>sp|Q0D1K3|PRP5_ASPTN Pre-mRNA-processing ATP-dependent RNA helicase 
prp5 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) 
OX=341663 GN=prp5 PE=3 SV=1
Length=1181

 Score = 136 bits (343),  Expect = 5e-32, Method: Composition-based stats.
 Identities = 66/368 (18%), Positives = 128/368 (35%), Gaps = 47/368 (13%)

Query  212  QQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAA  269
            Q+P +           P  +L  ++       L+   L     +G    + Q+ +L   A
Sbjct  614  QRPLENMEGPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAELKRGA  673

Query  270  ALAGLQEQRVYAL--------HLRRYNDALLIHDTVRAVD--------------------  301
             +      R+  L           R    +++ +  R  D                    
Sbjct  674  EIVVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANVRPDRQT  733

Query  302  ALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQ  361
             L +     + E + +  +      ++        E+  +     E+ K   L ++L   
Sbjct  734  VLFSATFPRNMEALARKTLNKPVEIVVGGKSVVAPEITQIVEVRNEDKKFVRLLELLGNL  793

Query  362  FSS--SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRD  419
            +SS  +   R +IF   +++A +LL  L ++              G    S      Q D
Sbjct  794  YSSDENEDARALIFVERQEAADTLLRELMRK--------------GYPCMSIHGGKDQID  839

Query  420  QQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSV  478
            +   I+ F+ G   +L+ATSVA  GLD+    +VV Y    +    V   GR  RA  + 
Sbjct  840  RDSTIEDFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTG  899

Query  479  YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA  538
             A       +E     I +AL+   ++    VQ+M  +  +      ++A+ +    +  
Sbjct  900  TAVTFLTEDQERFSVDIAKALKQSGQKVPEPVQQMVDSFLEKVKAGKEKASASGFGGKGL  959

Query  539  QRENQRQQ  546
            +R +Q + 
Sbjct  960  ERLDQERD  967


 Score = 57.5 bits (137),  Expect = 4e-07, Method: Composition-based stats.
 Identities = 30/138 (22%), Positives = 54/138 (39%), Gaps = 12/138 (9%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYV-AKRH------LETVDGAKVVVLVNRVHL  59
            Q + I   + G+++I    TG+GKT  A  +   RH      LE ++G   +++     L
Sbjct  576  QSQAIPAIMSGRDVIGVAKTGSGKT-VAFLIPMFRHIKDQRPLENMEGPIGLIMTPTREL  634

Query  60   VTQHGEEFRRMLDG--RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE  117
             TQ  ++ +  L       V    G          L R  ++++CT   +   L +    
Sbjct  635  ATQIHKDCKPFLKALNLRAVCAYGGAPIKDQI-AELKRGAEIVVCTPGRMIDLLAANAGR  693

Query  118  EHVELTVFSLIVVDECHH  135
                L   + +V+DE   
Sbjct  694  -VTNLRRVTYVVLDEADR  710


>sp|G0SFM2|DBP2_CHATD ATP-dependent RNA helicase DBP2 OS=Chaetomium 
thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) 
OX=759272 GN=DBP2 PE=3 SV=2
Length=556

 Score = 134 bits (337),  Expect = 5e-32, Method: Composition-based stats.
 Identities = 59/342 (17%), Positives = 117/342 (34%), Gaps = 50/342 (15%)

Query  193  DTWCIMSPQNCCPQLQEHSQQPCKQY-NLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSR  251
            +T    +   C P +   + QP     +        P  +L  ++  +I+   +   +  
Sbjct  174  ETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQQEINKFGKSSRIRN  233

Query  252  K--FGTQMYEQQVVKLSEAAALAGLQEQRVY------ALHLRRYNDALLIHDTVRAVDA-  302
               +G      Q+  L     +      R+         +LRR    L++ +  R +D  
Sbjct  234  TCIYGGVPKGPQIRDLQRGVEVCIATPGRLIDMLESGKTNLRR-VTYLVLDEADRMLDMG  292

Query  303  --------------------LAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLA  342
                                 +A      R           +  + +L     + +  + 
Sbjct  293  FEPQIRKIISQIRPDRQTLMWSATWPKEVRNLAADFLTDFIQVNIGSLDLAANHRITQIV  352

Query  343  THGPENPKLEMLEKILQR-QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQ  401
                E+ K + L K L++   S     + +IF  T++ A  +  +L+Q            
Sbjct  353  EVISESEKRDRLIKHLEKIMDSRDTQNKCLIFVGTKRVADDITRFLRQD-----------  401

Query  402  LLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN  461
               G    S      Q ++  V+ +F+ G   ++VAT VA  G+D+ +   V+ Y    N
Sbjct  402  ---GWPALSIHGDKQQNERDWVLDQFKTGKSPIMVATDVASRGIDVRNITHVINYDYPNN  458

Query  462  EISMVQAR---GRARADQSVYAFVATEGSRELKRELINEALE  500
                +      GRA A  +   F  TE +++  R+L++   E
Sbjct  459  SEDYIHRIGRTGRAGAKGTAITFFTTENAKQ-ARDLVSVLQE  499


 Score = 53.3 bits (126),  Expect = 5e-06, Method: Composition-based stats.
 Identities = 32/129 (25%), Positives = 49/129 (38%), Gaps = 11/129 (9%)

Query  14   ALEGKNIIIWLPTGAGKTRA----AAYVA--KRHLETVDGAKVVVLVNRVHLVTQHGEEF  67
            AL G++++    TG+GKT      A      +  L   DG  V+VL     L  Q  +E 
Sbjct  163  ALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQQEI  222

Query  68   RRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS  126
             +     R   T + G +        L R  ++ I T   L   L S +      L   +
Sbjct  223  NKFGKSSRIRNTCIYGGVPKGPQIRDLQRGVEVCIATPGRLIDMLESGKTN----LRRVT  278

Query  127  LIVVDECHH  135
             +V+DE   
Sbjct  279  YLVLDEADR  287


>sp|Q9PA24|RHLB_XYLFA ATP-dependent RNA helicase RhlB OS=Xylella 
fastidiosa (strain 9a5c) OX=160492 GN=rhlB PE=3 SV=2
Length=543

 Score = 134 bits (337),  Expect = 5e-32, Method: Composition-based stats.
 Identities = 70/381 (18%), Positives = 120/381 (31%), Gaps = 59/381 (15%)

Query  165  GLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRR  224
            GLT + G    + +      V     ++              L     +   +  L +R 
Sbjct  23   GLTRA-GFTLCTPIQALTLPVALAGRDIAGQAQTGTGKTLAFLVVVVNRLLSRPGLVNRN  81

Query  225  SQDPFGDLLKKL----MDQIHDHLEM-----PELSRKFGTQMYEQQVVKLSEAAALAGLQ  275
             +DP   +L       +   +D ++         +  +G   Y++Q   L + A +    
Sbjct  82   PEDPRALILAPTRELAIQIYNDAVKFGGNLGLRFALIYGGVDYDKQREMLRKGADVVIAT  141

Query  276  EQRVYALHLR------RYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLA  329
              R+     +      R  +  ++ +  R  D L  ++D          +         A
Sbjct  142  PGRLIDYLKQHEVVSLRVCEICVLDEADRMFD-LGFIKDIRFILRRLPERCSRQTLLFSA  200

Query  330  LFDDRKNELAHLATHGPE-------------------NPKLEMLEKILQRQFSSSNSPRG  370
                R  ELA+   + PE                    P  E    +L    S S   R 
Sbjct  201  TLSHRVLELAYEYMNEPEKLVAETETVTTTRVRQRIYFPAEEEKIPLLLGLLSRSEGMRT  260

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            ++F  T+     +   L +               G      S  + QR ++ ++ +FQ G
Sbjct  261  MVFVNTKVFVEGVARALDEA--------------GYRVGVLSGDVPQRKRETLLNRFQKG  306

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA---RADQSVYAFVATEGS  487
             L +LVAT VA  GL I   N V  Y L  +    V   GR     AD    +F     +
Sbjct  307  QLEILVATDVAARGLHIDGVNYVYNYDLPFDAEDYVHRIGRTARLGADGDAISFACERYA  366

Query  488  RELKRELINEALETLMEQAVA  508
              L        +E  +EQ + 
Sbjct  367  MSLP------DIEAYIEQKIP  381


 Score = 49.8 bits (117),  Expect = 6e-05, Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 46/131 (35%), Gaps = 12/131 (9%)

Query  14   ALEGKNIIIWLPTGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGE  65
            AL G++I     TG GKT A   V    L           +  + ++L     L  Q   
Sbjct  43   ALAGRDIAGQAQTGTGKTLAFLVVVVNRLLSRPGLVNRNPEDPRALILAPTRELAIQIYN  102

Query  66   -EFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
               +   +       + G +        L +  D++I T   L   L   ++ E V L V
Sbjct  103  DAVKFGGNLGLRFALIYGGVDYDKQREMLRKGADVVIATPGRLIDYL---KQHEVVSLRV  159

Query  125  FSLIVVDECHH  135
              + V+DE   
Sbjct  160  CEICVLDEADR  170


>sp|A4RN46|PRP5_PYRO7 Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Pyricularia oryzae (strain 70-15 / ATCC MYA-4617 
/ FGSC 8958) OX=242507 GN=PRP5 PE=3 SV=1
Length=1012

 Score = 136 bits (342),  Expect = 6e-32, Method: Composition-based stats.
 Identities = 66/344 (19%), Positives = 117/344 (34%), Gaps = 48/344 (14%)

Query  212  QQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAA  269
            Q+P K           P  +L  ++       L+   L     +G    + Q+  L   A
Sbjct  443  QEPVKDNEGPIGLILTPTRELAVQIFRDCKPFLKTLGLRAVCAYGGPPIKDQIADLKRGA  502

Query  270  ALAGLQEQRVYAL---------HLRRYNDALLIHDTVRAVD---------ALAALQD---  308
             +      R+  L          LRR    +++ +  R  D           A ++    
Sbjct  503  EIVVATTGRMIDLLAANQGRVVSLRR-TTYIVLDEADRMFDMGFEPQVMKIFANVRPDRQ  561

Query  309  -FYHREHVTKTQILCAERRLLALFDDRK-------NELAHLATHGPENPKLEMLEKILQR  360
                   + K      ++ L    +          +E+  +     E  K   L ++L  
Sbjct  562  TVLFSATMPKIMDALVKKVLKNPVEIEVGGKSVVASEITQIVEIRDEKSKFNRLLELLGE  621

Query  361  QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ  420
             +   +  R +IF   ++ A  LL  L ++              G G  S      Q D+
Sbjct  622  LYKDDDDVRSLIFVERQEKADELLRELLRK--------------GYGCMSLHGGKDQVDR  667

Query  421  QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVY  479
               I  F+ G   +++ATSVA  GLD+    +VV Y    +    V   GR  RA  +  
Sbjct  668  DSTISDFKSGVCPVMIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGT  727

Query  480  AFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIR  523
            A       +E     I +ALE   +     + +M +A ++ K++
Sbjct  728  AVTFVTEEQENCAIGIAKALEQSGQPVPEKLIEMRKA-FREKVK  770


 Score = 54.0 bits (128),  Expect = 4e-06, Method: Composition-based stats.
 Identities = 51/322 (16%), Positives = 112/322 (35%), Gaps = 27/322 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK------VVVLVNRVHLV  60
            Q + +   + G++++    TG+GKT A      RH++  +  K       ++L     L 
Sbjct  405  QMQALPVIMSGRDVVGVAKTGSGKTMAFLLPMFRHIKDQEPVKDNEGPIGLILTPTRELA  464

Query  61   TQHGEEFRRMLD--GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEE  118
             Q   + +  L   G   V    G          L R  ++++ T   +   L + +   
Sbjct  465  VQIFRDCKPFLKTLGLRAVCAYGGPPIKDQI-ADLKRGAEIVVATTGRMIDLLAANQGR-  522

Query  119  HVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQ-----PLPQVLGLTASPGTG  173
             V L   + IV+DE            +M  +  ++  R        +P+++         
Sbjct  523  VVSLRRTTYIVLDEADRMFDMGFEPQVMKIFANVRPDRQTVLFSATMPKIMDALVKKVLK  582

Query  174  GASKLDGAINHVL--QLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYN-LCHRRSQDPFG  230
               +++     V+  ++   ++     S  N   +L     +       L     Q+   
Sbjct  583  NPVEIEVGGKSVVASEITQIVEIRDEKSKFNRLLELLGELYKDDDDVRSLIFVERQEKAD  642

Query  231  DLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDA  290
            +LL++L+ + +  + +         Q+     +   ++     +    V A  L      
Sbjct  643  ELLRELLRKGYGCMSLHGGK----DQVDRDSTISDFKSGVCPVMIATSVAARGLDVKQLK  698

Query  291  LLIHDTVRAVDALAALQDFYHR  312
            L+++      DA   L+D+ HR
Sbjct  699  LVVN-----YDAPNHLEDYVHR  715


>sp|Q1DZK8|DBP3_COCIM ATP-dependent RNA helicase DBP3 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=DBP3 PE=3 SV=2
Length=515

 Score = 133 bits (335),  Expect = 6e-32, Method: Composition-based stats.
 Identities = 67/355 (19%), Positives = 121/355 (34%), Gaps = 69/355 (19%)

Query  228  PFGDLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEA-------AALAGLQEQR  278
            P  +L  ++ DQ+       ++     +G    + Q  ++  A         L   Q  +
Sbjct  180  PTRELAVQIYDQLLRFSSAVDVGIACIYGGSPKDHQRREIRNASVVIATPGRLKDFQADQ  239

Query  279  VYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRK---  335
               L   +Y   L++ +  R +D     + F          I   ++R   +F       
Sbjct  240  TINLSGVKY---LVLDEADRMLD-----KGFEQDIQDIVKGIPSTQKRQTIMFTATWPIG  291

Query  336  -NELAHLATHGPE-------------------------NPKLEMLEKILQRQ-FSSSNSP  368
               LA   T  P                            K   L ++L+R      N+ 
Sbjct  292  VRNLAASFTKNPVTVTIGDSSDIRANKRIKQMVEVLQPYEKDSRLLELLRRYQDGGKNNH  351

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            R ++F   ++ A  +  ++  +              G   +     M+Q ++   ++ F+
Sbjct  352  RILVFCLYKKEAMRVERFIGSK--------------GFKVAGIHGDMSQTERFRSLEAFK  397

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEG  486
             G+++LLVAT VA  GLDIP   +V+           V   GR  RA     A  + TE 
Sbjct  398  SGSISLLVATDVAARGLDIPAVKLVLNVTFPLTIEDYVHRIGRTGRAGAEGLAITLFTER  457

Query  487  SRELKRELIN------EALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAA  535
             + L   LIN      + +   + +  A V+K     Y A  R++    +  R  
Sbjct  458  DKALSGPLINVLRAADQDVPESLLKFGATVKKKQHESYGAFFREMDTTKVASRIK  512


 Score = 43.6 bits (101),  Expect = 0.006, Method: Composition-based stats.
 Identities = 24/129 (19%), Positives = 47/129 (36%), Gaps = 12/129 (9%)

Query  14   ALEGKNIIIWLPTGAGKTRAAAYV--AKRHLETVDGAK-----VVVLVNRVHLVTQHGEE  66
            A  G+++I    TG+GKT  A  +   +R LE  +         +++     L  Q  ++
Sbjct  133  AFAGRDLIGVAETGSGKTL-AFGLPCLRRVLELNNSETSCKPCALIITPTRELAVQIYDQ  191

Query  67   FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS  126
              R                P+       R   ++I T   L+      + ++ + L+   
Sbjct  192  LLRFSSAVDVGIACIYGGSPKDHQRREIRNASVVIATPGRLKD----FQADQTINLSGVK  247

Query  127  LIVVDECHH  135
             +V+DE   
Sbjct  248  YLVLDEADR  256


>sp|Q62095|DDX3Y_MOUSE ATP-dependent RNA helicase DDX3Y OS=Mus 
musculus OX=10090 GN=Ddx3y PE=1 SV=2
Length=658

 Score = 135 bits (339),  Expect = 7e-32, Method: Composition-based stats.
 Identities = 57/283 (20%), Positives = 105/283 (37%), Gaps = 48/283 (17%)

Query  253  FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND-----ALLIHDTVRAVDALAALQ  307
            +G     QQ+  L     L      R+  +  R          L++ +  R +D     Q
Sbjct  300  YGGADTVQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ  359

Query  308  DFYHREHVTKTQILCAERRLLALFDD-RKNELAHLA-----------------THGPENP  349
                R  V +  +     R   +F      E+  LA                 T      
Sbjct  360  ---IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQ  416

Query  350  KLEMLEKILQRQF------SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLL  403
            K+  +E++ +R F      ++      ++F  T++ A SL  +L Q++            
Sbjct  417  KVVWVEELDKRSFLLDLLNATGKDSLTLVFVETKKGADSLENFLFQER------------  464

Query  404  IGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI  463
                 +S     +Q+D++E + +F+ G   +LVAT+VA  GLDI +   V+ + L ++  
Sbjct  465  --YACTSIHGDRSQKDREEALHQFRSGRKPILVATAVAARGLDISNVKHVINFDLPSDIE  522

Query  464  SMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLME  504
              V   GR  R      A     E +  + ++L++  +E   E
Sbjct  523  EYVHRIGRTGRVGNLGLATSFFNERNLNITKDLLDLLVEAKQE  565


 Score = 49.0 bits (115),  Expect = 1e-04, Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 45/150 (30%), Gaps = 26/150 (17%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT---------RA-------AAYVAKRHLETVDGAK-  49
            Q   I    E ++++    TG+GKT         +        A    K +       + 
Sbjct  206  QKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAMKENGRYGRRKQY  265

Query  50   --VVVLVNRVHLVTQHGEEFRRML--DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAE  105
               +VL     L  Q  EE R+              G    +     L R   LL+ T  
Sbjct  266  PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADTVQQIRD-LERGCHLLVATPG  324

Query  106  LLQMALTSPEEEEHVELTVFSLIVVDECHH  135
             L   +    E   + L     +V+DE   
Sbjct  325  RLVDMM----ERGKIGLDFCKYLVLDEADR  350


>sp|Q9LUW5|RH53_ARATH DEAD-box ATP-dependent RNA helicase 53, 
mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RH53 PE=1 SV=1
Length=616

 Score = 134 bits (338),  Expect = 7e-32, Method: Composition-based stats.
 Identities = 62/321 (19%), Positives = 116/321 (36%), Gaps = 47/321 (15%)

Query  228  PFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRY  287
            P  +L +++  +  +     +    +G     QQ+ +L     +A     RV  L  R  
Sbjct  186  PTRELARQVEKEFRESAPSLDTICLYGGTPIGQQMRQLDYGVDVAVGTPGRVIDLMKR--  243

Query  288  NDALLIHDTVRAV-DALAALQDFYHREHVTKTQILCAERRLLALFD----DRKNELAHLA  342
              AL + +    V D    +      E V        E+R   +F          L    
Sbjct  244  -GALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSMMFSATMPSWIRSLTKKY  302

Query  343  THGPE--------NPKLEMLEK---ILQRQF-----------SSSNSPRGIIFTRTRQSA  380
             + P         + KL        I+   +             +   + I+FT+T++ A
Sbjct  303  LNNPLTVDLVGDSDQKLADGITTYSIIADSYGRASIIGPLVTEHAKGGKCIVFTQTKRDA  362

Query  381  HSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSV  440
              L   L +         + + L G         ++Q  ++  +  F+DG  N+LVAT V
Sbjct  363  DRLSYALAR-------SFKCEALHG--------DISQSQRERTLAGFRDGHFNILVATDV  407

Query  441  AEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEAL  499
            A  GLD+P+ ++++ Y L  N  + V   GR  RA +   A +     +    ++I   +
Sbjct  408  AARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQSRAVKIIEREV  467

Query  500  -ETLMEQAVAAVQKMDQAEYQ  519
                 E    AV++   + ++
Sbjct  468  GSRFTELPSIAVERGSASMFE  488


 Score = 54.4 bits (129),  Expect = 3e-06, Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 51/134 (38%), Gaps = 12/134 (9%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTR-----AAAYVAKRHLETVDGAK--VVVLVNRVHL  59
            Q  V+ PA+EG+++I    TG GKT          + K + +   G     +VL     L
Sbjct  131  QKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTREL  190

Query  60   VTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
              Q  +EFR       T+    G    +     L    D+ + T   +   +    +   
Sbjct  191  ARQVEKEFRESAPSLDTICLYGGTPIGQQMR-QLDYGVDVAVGTPGRVIDLM----KRGA  245

Query  120  VELTVFSLIVVDEC  133
            + L+    +V+DE 
Sbjct  246  LNLSEVQFVVLDEA  259


>sp|Q8NYL9|HSDR_STAAW Type I restriction enzyme SauMW2ORF169P 
endonuclease subunit OS=Staphylococcus aureus (strain MW2) OX=196620 
GN=hsdR PE=3 SV=1
Length=929

 Score = 136 bits (341),  Expect = 8e-32, Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 73/185 (39%), Gaps = 18/185 (10%)

Query  1    MELRSYQWEVIMPALE-----GKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVN  55
            M +R YQ   +   ++     G N  +W  TG+GKT  +   ++   +  D  KV+ LV+
Sbjct  239  MAMRPYQVYAVEALIQQATETGNNGYVWHTTGSGKTLTSFKASQILSQQDDIKKVIFLVD  298

Query  56   RVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE  115
            R  L +Q  EEF +   G    T  +  +  +     L     L++ T + +  A+    
Sbjct  299  RKDLDSQTEEEFNKFAKGAVDKTFNTSQLVRQLNDKSLP----LIVTTIQKMAKAIQGNA  354

Query  116  EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGA  175
                   T   + ++DECH +    ++ ++   +            Q  G T +P     
Sbjct  355  HLLEQYKTNKVVFIIDECHRSQFGDMHRLVKQHFKN---------AQYFGFTGTPRFPEN  405

Query  176  SKLDG  180
            S  DG
Sbjct  406  SSQDG  410


>sp|Q6GCT1|HSDR_STAAS Type I restriction enzyme SauMSSORF170P 
endonuclease subunit OS=Staphylococcus aureus (strain MSSA476) 
OX=282459 GN=hsdR PE=3 SV=1
Length=929

 Score = 136 bits (341),  Expect = 8e-32, Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 73/185 (39%), Gaps = 18/185 (10%)

Query  1    MELRSYQWEVIMPALE-----GKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVN  55
            M +R YQ   +   ++     G N  +W  TG+GKT  +   ++   +  D  KV+ LV+
Sbjct  239  MAMRPYQVYAVEALIQQATETGNNGYVWHTTGSGKTLTSFKASQILSQQDDIKKVIFLVD  298

Query  56   RVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE  115
            R  L +Q  EEF +   G    T  +  +  +     L     L++ T + +  A+    
Sbjct  299  RKDLDSQTEEEFNKFAKGAVDKTFNTSQLVRQLNDKSLP----LIVTTIQKMAKAIQGNA  354

Query  116  EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGA  175
                   T   + ++DECH +    ++ ++   +            Q  G T +P     
Sbjct  355  HLLEQYKTNKVVFIIDECHRSQFGDMHRLVKQHFKN---------AQYFGFTGTPRFPEN  405

Query  176  SKLDG  180
            S  DG
Sbjct  406  SSQDG  410


>sp|Q6GKB1|HSDR_STAAR Type I restriction enzyme SauMRSORF196P 
endonuclease subunit OS=Staphylococcus aureus (strain MRSA252) 
OX=282458 GN=hsdR PE=3 SV=1
Length=929

 Score = 136 bits (341),  Expect = 8e-32, Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 73/185 (39%), Gaps = 18/185 (10%)

Query  1    MELRSYQWEVIMPALE-----GKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVN  55
            M +R YQ   +   ++     G N  +W  TG+GKT  +   ++   +  D  KV+ LV+
Sbjct  239  MAMRPYQVYAVEALIQQATETGNNGYVWHTTGSGKTLTSFKASQILSQQDDIKKVIFLVD  298

Query  56   RVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE  115
            R  L +Q  EEF +   G    T  +  +  +     L     L++ T + +  A+    
Sbjct  299  RKDLDSQTEEEFNKFAKGAVDKTFNTSQLVRQLNDKSLP----LIVTTIQKMAKAIQGNA  354

Query  116  EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGA  175
                   T   + ++DECH +    ++ ++   +            Q  G T +P     
Sbjct  355  HLLEQYKTNKVVFIIDECHRSQFGDMHRLVKQHFKN---------AQYFGFTGTPRFPEN  405

Query  176  SKLDG  180
            S  DG
Sbjct  406  SSQDG  410


>sp|Q0UY62|DBP3_PHANO ATP-dependent RNA helicase DBP3 OS=Phaeosphaeria 
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) 
OX=321614 GN=DBP3 PE=3 SV=1
Length=592

 Score = 134 bits (337),  Expect = 8e-32, Method: Composition-based stats.
 Identities = 43/207 (21%), Positives = 79/207 (38%), Gaps = 23/207 (11%)

Query  337  ELAHLATHGPENPKLEMLEKILQRQFSSSN-SPRGIIFTRTRQSAHSLLLWLQQQQGLQT  395
             +  L      + K + L ++L++  S  N   R ++F   ++ A  +  +++       
Sbjct  397  RIKQLVEVLDPHAKEQRLLQLLKQYQSGKNKDDRILVFCLYKKEAMRIENFIR-------  449

Query  396  VDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVR  455
                   + G         ++Q  +   +  F++G + LLVAT VA  GLDIP   +V+ 
Sbjct  450  -------MKGFRVGGIHGDLSQEKRSASLAAFKEGQVPLLVATDVAARGLDIPAVKLVIN  502

Query  456  YGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELI------NEALETLMEQAV  507
                      V   GR  RA +   A    TE  + L   LI      N+ +   + +  
Sbjct  503  VTFPLTAEDYVHRIGRTGRAGKEGLAITFFTEHDKGLSGSLINVLKAANQEVPEELLKFG  562

Query  508  AAVQKMDQAEYQAKIRDLQQAALTKRA  534
              V+K +   Y A  +D+       + 
Sbjct  563  TTVKKKEHGAYGAFYKDVDNTKAATKI  589


 Score = 42.9 bits (99),  Expect = 0.010, Method: Composition-based stats.
 Identities = 21/127 (17%), Positives = 45/127 (35%), Gaps = 11/127 (9%)

Query  15   LEGKNIIIWLPTGAGKTRA----AAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGEEFRR  69
            L G++++    TG+GKT A             +      K V++     L  Q  ++   
Sbjct  213  LSGRDMVGVAETGSGKTLAFGVPCVRAILSLPKDKRKGIKAVIVSPTRELAVQIYDQLVA  272

Query  70   ML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLI  128
            +      +V  + G +          + H +++ T   L   +     +   +L+    +
Sbjct  273  LAHPAGLSVVCVYGGVPKDPQVAACRKAH-IVVATPGRLNDLI----GDGSADLSNADYV  327

Query  129  VVDECHH  135
            V+DE   
Sbjct  328  VLDEADR  334


>sp|Q7A801|HSDR_STAAN Type I restriction enzyme SauN315I endonuclease 
subunit OS=Staphylococcus aureus (strain N315) OX=158879 
GN=hsdR PE=1 SV=1
Length=929

 Score = 136 bits (341),  Expect = 8e-32, Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 73/185 (39%), Gaps = 18/185 (10%)

Query  1    MELRSYQWEVIMPALE-----GKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVN  55
            M +R YQ   +   ++     G N  +W  TG+GKT  +   ++   +  D  KV+ LV+
Sbjct  239  MAMRPYQVYAVEALIQQATETGNNGYVWHTTGSGKTLTSFKASQILSQQDDIKKVIFLVD  298

Query  56   RVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE  115
            R  L +Q  EEF +   G    T  +  +  +     L     L++ T + +  A+    
Sbjct  299  RKDLDSQTEEEFNKFAKGAVDKTFNTSQLVRQLNDKSLP----LIVTTIQKMAKAIQGNA  354

Query  116  EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGA  175
                   T   + ++DECH +    ++ ++   +            Q  G T +P     
Sbjct  355  HLLEQYKTNKVVFIIDECHRSQFGDMHRLVKQHFKN---------AQYFGFTGTPRFPEN  405

Query  176  SKLDG  180
            S  DG
Sbjct  406  SSQDG  410


>sp|Q99X26|HSDR_STAAM Type I restriction enzyme SauMu50ORF195P 
endonuclease subunit OS=Staphylococcus aureus (strain Mu50 
/ ATCC 700699) OX=158878 GN=hsdR PE=3 SV=1
Length=929

 Score = 136 bits (341),  Expect = 8e-32, Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 73/185 (39%), Gaps = 18/185 (10%)

Query  1    MELRSYQWEVIMPALE-----GKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVN  55
            M +R YQ   +   ++     G N  +W  TG+GKT  +   ++   +  D  KV+ LV+
Sbjct  239  MAMRPYQVYAVEALIQQATETGNNGYVWHTTGSGKTLTSFKASQILSQQDDIKKVIFLVD  298

Query  56   RVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE  115
            R  L +Q  EEF +   G    T  +  +  +     L     L++ T + +  A+    
Sbjct  299  RKDLDSQTEEEFNKFAKGAVDKTFNTSQLVRQLNDKSLP----LIVTTIQKMAKAIQGNA  354

Query  116  EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGA  175
                   T   + ++DECH +    ++ ++   +            Q  G T +P     
Sbjct  355  HLLEQYKTNKVVFIIDECHRSQFGDMHRLVKQHFKN---------AQYFGFTGTPRFPEN  405

Query  176  SKLDG  180
            S  DG
Sbjct  406  SSQDG  410


>sp|A7ENE0|PRP5_SCLS1 Pre-mRNA-processing ATP-dependent RNA helicase 
prp5 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 
1980 / Ss-1) OX=665079 GN=prp5 PE=3 SV=1
Length=1114

 Score = 136 bits (342),  Expect = 9e-32, Method: Composition-based stats.
 Identities = 59/340 (17%), Positives = 114/340 (34%), Gaps = 45/340 (13%)

Query  212  QQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAA  269
            Q+P K  +        P  +L  ++  +    L+   L     +G  + + Q+  L   A
Sbjct  548  QRPLKNSDGPIGLIMTPTRELATQIHKECKPFLKAMGLRAVCAYGGAIIKDQIADLKRGA  607

Query  270  ALAGLQEQRVYAL--------HLRRYNDALLIHDTVRAVD-------------ALAALQD  308
             +      R+  L           +    +++ +  R  D                  Q 
Sbjct  608  EIIVCTPGRMIELLAANSGRVTNLQRVTYVVLDEADRMFDMGFEPQVMKVFNNIRPNRQT  667

Query  309  FYHREHVTKTQILCAERRLLALFDDRK-------NELAHLATHGPENPKLEMLEKILQRQ  361
                  + +     A++ L +  +           E+  +     E  K   L ++L   
Sbjct  668  ILFSATMPRIMDALAKKTLQSPVEIVVGGRSVVAPEITQIVEVREEKEKFHRLLELLGEL  727

Query  362  FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ  421
            +++    R +IF   ++ A  LL  L ++              G    S      Q D+ 
Sbjct  728  YNADEDARTLIFVDRQEKADDLLKDLMRK--------------GYPCMSIHGGKDQVDRD  773

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYA  480
              I  F+ G + +++ATSVA  GLD+    +VV +    +    V   GR  RA  +  A
Sbjct  774  STIDDFKAGVVPIMIATSVAARGLDVKQLKLVVNFDAPNHLEDYVHRAGRTGRAGNTGTA  833

Query  481  FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA  520
                   +E     I +ALE   ++    + +M ++    
Sbjct  834  VTFITEEQEQYSVGIAKALEQSGQEVPERLNEMRKSYKDK  873


 Score = 74.4 bits (181),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 62/328 (19%), Positives = 113/328 (34%), Gaps = 39/328 (12%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYV-AKRHLETVDGAKV------VVLVNRVHL  59
            Q + I   + G+++I    TG+GKT  A  +   RH+      K       +++     L
Sbjct  510  QMQAIPAIMSGRDVIGVAKTGSGKT-IAFLLPMFRHIRDQRPLKNSDGPIGLIMTPTREL  568

Query  60   VTQHGEEFRRMLD--GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE  117
             TQ  +E +  L   G   V    G +        L R  ++++CT   +   L +    
Sbjct  569  ATQIHKECKPFLKAMGLRAVCAYGGAIIKDQI-ADLKRGAEIIVCTPGRMIELLAANSGR  627

Query  118  EHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQ-----PLPQVLGLTA----  168
                L   + +V+DE            +M  +  ++  R        +P+++   A    
Sbjct  628  -VTNLQRVTYVVLDEADRMFDMGFEPQVMKVFNNIRPNRQTILFSATMPRIMDALAKKTL  686

Query  169  -SP---GTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRR  224
             SP     GG S +   I  ++++                  L E          L    
Sbjct  687  QSPVEIVVGGRSVVAPEITQIVEV-----REEKEKFHRLLELLGELYNADEDARTLIFVD  741

Query  225  SQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHL  284
             Q+   DLLK LM + +  + +         Q+     +   +A  +  +    V A  L
Sbjct  742  RQEKADDLLKDLMRKGYPCMSIHGGK----DQVDRDSTIDDFKAGVVPIMIATSVAARGL  797

Query  285  RRYNDALLIHDTVRAVDALAALQDFYHR  312
                  L+++      DA   L+D+ HR
Sbjct  798  DVKQLKLVVN-----FDAPNHLEDYVHR  820


>sp|P24784|DBP1_YEAST ATP-dependent RNA helicase DBP1 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DBP1 
PE=1 SV=2
Length=617

 Score = 134 bits (337),  Expect = 9e-32, Method: Composition-based stats.
 Identities = 57/282 (20%), Positives = 98/282 (35%), Gaps = 47/282 (17%)

Query  253  FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND-----ALLIHDTVRAVDALAALQ  307
            +G      Q+ ++     L      R+  L  R          L++ +  R +D     Q
Sbjct  272  YGGAPIGNQMREVDRGCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQ  331

Query  308  DFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGP------------ENPKL  351
                R  V +  +   E R   +F          LA                   EN   
Sbjct  332  ---IRHIVEECDMPSVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQ  388

Query  352  EML-------EKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI  404
             +L       +  L    S+ +    +IF  T++ A  L  +L  Q      + +A  + 
Sbjct  389  RILYVDDMDKKSALLDLLSAEHKGLTLIFVETKRMADQLTDFLIMQ------NFKATAIH  442

Query  405  GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
            G          TQ +++  +  F+    ++LVAT+VA  GLDIP+   V+ Y L ++   
Sbjct  443  G--------DRTQAERERALSAFKANVADILVATAVAARGLDIPNVTHVINYDLPSDIDD  494

Query  465  MVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLME  504
             V   GR  RA  +  A       ++ + + L+    E   E
Sbjct  495  YVHRIGRTGRAGNTGVATSFFNSNNQNIVKGLMEILNEANQE  536


 Score = 49.8 bits (117),  Expect = 8e-05, Method: Composition-based stats.
 Identities = 30/138 (22%), Positives = 45/138 (33%), Gaps = 21/138 (15%)

Query  15   LEGKNIIIWLPTGAGKT-------RAAAYV---------AKRHLETVDGAKVVVLVNRVH  58
             +G++++    TG+GKT           +          A+           +VL     
Sbjct  189  TKGRDLMACAQTGSGKTGGFLFPLFTELFRSGPSPVPEKAQSFYSRKGYPSALVLAPTRE  248

Query  59   LVTQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE  117
            L TQ  EE R+     W     + G          + R  DLL+ T   L   L    E 
Sbjct  249  LATQIFEEARKFTYRSWVRPCVVYGGAPIGNQMREVDRGCDLLVATPGRLNDLL----ER  304

Query  118  EHVELTVFSLIVVDECHH  135
              V L     +V+DE   
Sbjct  305  GKVSLANIKYLVLDEADR  322


>sp|A6ZWD3|DBP1_YEAS7 ATP-dependent RNA helicase DBP1 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=DBP1 PE=3 SV=1
Length=617

 Score = 134 bits (337),  Expect = 9e-32, Method: Composition-based stats.
 Identities = 57/282 (20%), Positives = 98/282 (35%), Gaps = 47/282 (17%)

Query  253  FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND-----ALLIHDTVRAVDALAALQ  307
            +G      Q+ ++     L      R+  L  R          L++ +  R +D     Q
Sbjct  272  YGGAPIGNQMREVDRGCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQ  331

Query  308  DFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGP------------ENPKL  351
                R  V +  +   E R   +F          LA                   EN   
Sbjct  332  ---IRHIVEECDMPSVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQ  388

Query  352  EML-------EKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI  404
             +L       +  L    S+ +    +IF  T++ A  L  +L  Q      + +A  + 
Sbjct  389  RILYVDDMDKKSALLDLLSAEHKGLTLIFVETKRMADQLTDFLIMQ------NFKATAIH  442

Query  405  GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
            G          TQ +++  +  F+    ++LVAT+VA  GLDIP+   V+ Y L ++   
Sbjct  443  G--------DRTQAERERALSAFKANVADILVATAVAARGLDIPNVTHVINYDLPSDIDD  494

Query  465  MVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLME  504
             V   GR  RA  +  A       ++ + + L+    E   E
Sbjct  495  YVHRIGRTGRAGNTGVATSFFNSNNQNIVKGLMEILNEANQE  536


 Score = 49.8 bits (117),  Expect = 8e-05, Method: Composition-based stats.
 Identities = 30/138 (22%), Positives = 45/138 (33%), Gaps = 21/138 (15%)

Query  15   LEGKNIIIWLPTGAGKT-------RAAAYV---------AKRHLETVDGAKVVVLVNRVH  58
             +G++++    TG+GKT           +          A+           +VL     
Sbjct  189  TKGRDLMACAQTGSGKTGGFLFPLFTELFRSGPSPVPEKAQSFYSRKGYPSALVLAPTRE  248

Query  59   LVTQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE  117
            L TQ  EE R+     W     + G          + R  DLL+ T   L   L    E 
Sbjct  249  LATQIFEEARKFTYRSWVRPCVVYGGAPIGNQMREVDRGCDLLVATPGRLNDLL----ER  304

Query  118  EHVELTVFSLIVVDECHH  135
              V L     +V+DE   
Sbjct  305  GKVSLANIKYLVLDEADR  322


>sp|Q879Y6|RHLB_XYLFT ATP-dependent RNA helicase RhlB OS=Xylella 
fastidiosa (strain Temecula1 / ATCC 700964) OX=183190 GN=rhlB 
PE=3 SV=1
Length=543

 Score = 133 bits (335),  Expect = 1e-31, Method: Composition-based stats.
 Identities = 72/400 (18%), Positives = 123/400 (31%), Gaps = 60/400 (15%)

Query  147  SQYLELKLQRAQPLPQVL-GLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCP  205
                 L        P +L GLT + G    + +      V     ++             
Sbjct  4    KPLTNLNFSSFDLHPALLTGLTRA-GFTLCTPIQALTLPVALAGRDIAGQAQTGTGKTLA  62

Query  206  QLQEHSQQPCKQYNLCHRRSQDPFGDLLKKL----MDQIHDHLEM-----PELSRKFGTQ  256
             L     +      L +R  +DP   +L       +   +D ++         +  +G  
Sbjct  63   FLVVVVNRLLSSPGLVNRNPEDPRALILAPTRELAIQIYNDAVKFGGNLGLRFALIYGGV  122

Query  257  MYEQQVVKLSEAAALAGLQEQRVYALHLR------RYNDALLIHDTVRAVDALAALQDFY  310
             Y++Q   L + A +      R+     +      R  +  ++ +  R  D L  ++D  
Sbjct  123  DYDRQREMLRKGADVVIATPGRLIDYLKQHEVVSLRVCEICVLDEADRMFD-LGFIKDIR  181

Query  311  HREHVTKTQILCAERRLLALFDDRKNELAHLATHGPE-------------------NPKL  351
                    +         A    R  ELA+   + PE                    P  
Sbjct  182  FILRRLPERCSRQTLLFSATLSHRVLELAYEYMNEPEKLVAETESVTTTRVRQRIYFPAE  241

Query  352  EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ  411
            E    +L    S +   R ++F  T+     +   L +               G      
Sbjct  242  EEKIPLLLGLLSRNEGMRTMVFVNTKVFVEGVARALDEA--------------GYRVGVL  287

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
            S  + QR ++ ++ +FQ G L +LVAT VA  GL I   N V  Y L  +    V   GR
Sbjct  288  SGDVPQRKRETLLNRFQKGQLEILVATDVAARGLHIDGVNYVYNYDLPFDAEDYVHRIGR  347

Query  472  A---RADQSVYAFVATEGSRELKRELINEALETLMEQAVA  508
                 AD    +F     +  L        +E  +EQ + 
Sbjct  348  TARLGADGDAISFACERYAMSLP------DIEAYIEQKIP  381


 Score = 50.2 bits (118),  Expect = 6e-05, Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 46/131 (35%), Gaps = 12/131 (9%)

Query  14   ALEGKNIIIWLPTGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGE  65
            AL G++I     TG GKT A   V    L           +  + ++L     L  Q   
Sbjct  43   ALAGRDIAGQAQTGTGKTLAFLVVVVNRLLSSPGLVNRNPEDPRALILAPTRELAIQIYN  102

Query  66   -EFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
               +   +       + G +        L +  D++I T   L   L   ++ E V L V
Sbjct  103  DAVKFGGNLGLRFALIYGGVDYDRQREMLRKGADVVIATPGRLIDYL---KQHEVVSLRV  159

Query  125  FSLIVVDECHH  135
              + V+DE   
Sbjct  160  CEICVLDEADR  170


>sp|A1D405|RRP3_NEOFI ATP-dependent rRNA helicase rrp3 OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / 
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=rrp3 
PE=3 SV=1
Length=472

 Score = 132 bits (332),  Expect = 1e-31, Method: Composition-based stats.
 Identities = 65/356 (18%), Positives = 130/356 (37%), Gaps = 48/356 (13%)

Query  214  PCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAG  273
            P ++      +S +  G  +      I   ++M   S   G + +   ++  +    L  
Sbjct  128  PTRELAFQISKSFESLGSTINVRCAVIVGGMDMVSQSIALGKKPH---IIVATPGRLLDH  184

Query  274  LQEQRVYALHLRRYNDALLIHDTVRAVD-ALAALQDFYHREHVTKTQILCAERRLLALFD  332
            L+  + ++L   +Y   L++ +  R +D     L D   +    + +         A   
Sbjct  185  LENTKGFSLRTLKY---LVMDEADRLLDMDFGPLLDKILKVLPRERRTFL----FSATMS  237

Query  333  DRKNELAHLATHGPE-----NPKLEMLEKILQRQFSSSNSPR---------------GII  372
             +   L   +   P      + K + +  +LQ      +  +                II
Sbjct  238  SKVESLQRASLSNPLRVSVSSNKYQTVSTLLQSYLFLPHKHKDIYLVYLLNEFVGQSAII  297

Query  373  FTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTL  432
            FTRT      +   L+               +G G       ++Q  +   + KF+  + 
Sbjct  298  FTRTVHETQRISFLLRS--------------LGFGAIPLHGQLSQSARLGALGKFRSRSR  343

Query  433  NLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELK  491
            ++LVAT VA  GLDIP  +VV+ + L T+  + V   GR ARA +S  A           
Sbjct  344  DILVATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQYDVEI  403

Query  492  RELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQF  547
               I  AL   +++    ++K +      ++ + Q+ A+ +      +R  + ++F
Sbjct  404  WLRIEGALGKKLKEY--ELEKDEVMVLAERVGEAQRQAIVEMKNFDEKRGTKAKKF  457


 Score = 64.0 bits (154),  Expect = 2e-09, Method: Composition-based stats.
 Identities = 66/424 (16%), Positives = 136/424 (32%), Gaps = 42/424 (10%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKV-VVLVNRVHLVTQHGE  65
            Q E I  AL+G+++I    TG+GKT A A    + L     +   ++L     L  Q  +
Sbjct  79   QAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMEKPQSFFGLILAPTRELAFQISK  138

Query  66   EFRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
             F  +          + G M   +    L +   +++ T   L   L + +      L  
Sbjct  139  SFESLGSTINVRCAVIVGGMDMVSQSIALGKKPHIIVATPGRLLDHLENTKG---FSLRT  195

Query  125  FSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLP---QVLGLTASPGTGGASKLDGA  181
               +V+DE           ++   +  L  +  + LP   +    +A+  +   S    +
Sbjct  196  LKYLVMDEADR--------LLDMDFGPLLDKILKVLPRERRTFLFSATMSSKVESLQRAS  247

Query  182  INHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIH  241
            +++ L++  + + +  +S          H  +      L      +  G         +H
Sbjct  248  LSNPLRVSVSSNKYQTVSTLLQSYLFLPHKHKDIYLVYL----LNEFVGQSAIIFTRTVH  303

Query  242  DHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVD  301
            +   +  L R  G         +LS++A L  L + R  +  +    D       + +VD
Sbjct  304  ETQRISFLLRSLGFGA-IPLHGQLSQSARLGALGKFRSRSRDILVATDVAARGLDIPSVD  362

Query  302  ALAAL------QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLE  355
             +         + + HR   T       +  +   F  + +    L   G    KL+   
Sbjct  363  VVLNFDLPTDSKTYVHRVGRTAR---AGKSGVAISFVTQYDVEIWLRIEGALGKKLK---  416

Query  356  KILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHM  415
                 ++        ++       A      + + +             G G  S+   M
Sbjct  417  -----EYELEKDE-VMVLAERVGEAQR--QAIVEMKNFDEKRGTKAKKFGKGKRSRD-EM  467

Query  416  TQRD  419
             Q +
Sbjct  468  DQEE  471


>sp|Q4WJE9|RRP3_ASPFU ATP-dependent rRNA helicase rrp3 OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC 
A1100 / Af293) OX=330879 GN=rrp3 PE=3 SV=1
Length=472

 Score = 132 bits (332),  Expect = 1e-31, Method: Composition-based stats.
 Identities = 65/368 (18%), Positives = 130/368 (35%), Gaps = 48/368 (13%)

Query  202  NCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQ  261
                        P ++      +S +  G  +      I   ++M   S   G + +   
Sbjct  116  ENPQSFFGLILAPTRELAFQISKSFESLGSTINVRCAVIVGGMDMVSQSIALGKKPH---  172

Query  262  VVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVD-ALAALQDFYHREHVTKTQI  320
            ++  +    L  L+  + ++L   +Y   L++ +  R +D     L D   +    + + 
Sbjct  173  IIVATPGRLLDHLENTKGFSLRTLKY---LVMDEADRLLDMDFGPLLDKILKVLPRERRT  229

Query  321  LCAERRLLALFDDRKNELAHLATHGPE-----NPKLEMLEKILQRQFSSSNSPR------  369
                    A    +   L   +   P      + K + +  +LQ      +  +      
Sbjct  230  FL----FSATMSSKVESLQRASLSNPLRVSVSSNKYQTVSTLLQSYLFLPHKHKDIYLVY  285

Query  370  ---------GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ  420
                      IIFTRT      +   L+               +G G       ++Q  +
Sbjct  286  LLNEFVGQSTIIFTRTVHETQRISFLLRS--------------LGFGAIPLHGQLSQSAR  331

Query  421  QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVY  479
               + KF+  + ++LVAT VA  GLDIP  +VV+ + L T+  + V   GR ARA +S  
Sbjct  332  LGALGKFRSRSRDILVATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGV  391

Query  480  AFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQ  539
            A              I  AL   +++    ++K +      ++ + Q+ A+ +      +
Sbjct  392  AISFVTQYDVEIWLRIEGALGKKLKEY--ELEKDEVMVLAERVGEAQRQAIMEMKNFDEK  449

Query  540  RENQRQQF  547
            R  + ++F
Sbjct  450  RGTKAKKF  457


 Score = 64.0 bits (154),  Expect = 2e-09, Method: Composition-based stats.
 Identities = 66/424 (16%), Positives = 136/424 (32%), Gaps = 42/424 (10%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKV-VVLVNRVHLVTQHGE  65
            Q E I  AL+G+++I    TG+GKT A A    + L     +   ++L     L  Q  +
Sbjct  79   QAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMENPQSFFGLILAPTRELAFQISK  138

Query  66   EFRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
             F  +          + G M   +    L +   +++ T   L   L + +      L  
Sbjct  139  SFESLGSTINVRCAVIVGGMDMVSQSIALGKKPHIIVATPGRLLDHLENTKG---FSLRT  195

Query  125  FSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLP---QVLGLTASPGTGGASKLDGA  181
               +V+DE           ++   +  L  +  + LP   +    +A+  +   S    +
Sbjct  196  LKYLVMDEADR--------LLDMDFGPLLDKILKVLPRERRTFLFSATMSSKVESLQRAS  247

Query  182  INHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIH  241
            +++ L++  + + +  +S          H  +      L      +  G         +H
Sbjct  248  LSNPLRVSVSSNKYQTVSTLLQSYLFLPHKHKDIYLVYL----LNEFVGQSTIIFTRTVH  303

Query  242  DHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVD  301
            +   +  L R  G         +LS++A L  L + R  +  +    D       + +VD
Sbjct  304  ETQRISFLLRSLGFGA-IPLHGQLSQSARLGALGKFRSRSRDILVATDVAARGLDIPSVD  362

Query  302  ALAAL------QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLE  355
             +         + + HR   T       +  +   F  + +    L   G    KL+   
Sbjct  363  VVLNFDLPTDSKTYVHRVGRTAR---AGKSGVAISFVTQYDVEIWLRIEGALGKKLK---  416

Query  356  KILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHM  415
                 ++        ++       A      + + +             G G  S+   M
Sbjct  417  -----EYELEKDE-VMVLAERVGEAQR--QAIMEMKNFDEKRGTKAKKFGKGKRSRD-EM  467

Query  416  TQRD  419
             Q +
Sbjct  468  DQEE  471


>sp|A2QQA8|PRP5_ASPNC Pre-mRNA-processing ATP-dependent RNA helicase 
prp5 OS=Aspergillus niger (strain ATCC MYA-4892 / CBS 
513.88 / FGSC A1513) OX=425011 GN=prp5 PE=3 SV=2
Length=1180

 Score = 136 bits (341),  Expect = 1e-31, Method: Composition-based stats.
 Identities = 66/368 (18%), Positives = 127/368 (35%), Gaps = 47/368 (13%)

Query  212  QQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAA  269
            Q+P             P  +L  ++       L+   L     +G    + Q+  L   A
Sbjct  612  QRPLDNMEGPVGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIADLKRGA  671

Query  270  ALAGLQEQRVYAL--------HLRRYNDALLIHDTVRAVD---------ALAALQDFYH-  311
             +      R+  L           R    +++ +  R  D          +A ++     
Sbjct  672  EIIVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRPDRQT  731

Query  312  ----------REHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQ  361
                       E + +  +      ++        E+  +     ++ K   L ++L   
Sbjct  732  VLFSATFPRNMEALARKTLTKPIEIVVGGKSVVAPEITQIVEVRNDDQKFVRLLELLGNL  791

Query  362  FSS--SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRD  419
            +SS  +   R +IF   +++A +LL  L ++              G    S      Q D
Sbjct  792  YSSDENEDARALIFVDRQEAADALLRELMRK--------------GYPCMSIHGGKDQID  837

Query  420  QQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSV  478
            +   I+ F+ G   +L+ATSVA  GLD+    +VV Y    +    V   GR  RA  + 
Sbjct  838  RDSTIEDFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTG  897

Query  479  YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA  538
             A       +E     I +AL+   ++    VQK+  A  +      ++A+ +    +  
Sbjct  898  TAVTFLTEDQERYSVDIAKALKQSGQKVPEPVQKLVDAFLEKVKAGKEKASASGFGGKGL  957

Query  539  QRENQRQQ  546
            +R +Q + 
Sbjct  958  ERLDQERD  965


 Score = 58.7 bits (140),  Expect = 2e-07, Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 54/138 (39%), Gaps = 12/138 (9%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYV-AKRH------LETVDGAKVVVLVNRVHL  59
            Q + I   + G+++I    TG+GKT  A  +   RH      L+ ++G   +++     L
Sbjct  574  QAQAIPAIMSGRDVIGVAKTGSGKT-IAFLIPMFRHIKDQRPLDNMEGPVGLIMTPTREL  632

Query  60   VTQHGEEFRRMLDG--RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE  117
             TQ  ++ +  L       V    G          L R  ++++CT   +   L +    
Sbjct  633  ATQIHKDCKPFLKALNLRAVCAYGGAPIKDQI-ADLKRGAEIIVCTPGRMIDLLAANAGR  691

Query  118  EHVELTVFSLIVVDECHH  135
                L   + +V+DE   
Sbjct  692  -VTNLRRVTYVVLDEADR  708


>sp|Q5HJH8|HSDR_STAAC Type I restriction enzyme SauCOLORF180P 
endonuclease subunit OS=Staphylococcus aureus (strain COL) OX=93062 
GN=hsdR PE=3 SV=1
Length=929

 Score = 135 bits (340),  Expect = 1e-31, Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 73/185 (39%), Gaps = 18/185 (10%)

Query  1    MELRSYQWEVIMPALE-----GKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVN  55
            M +R YQ   +   ++     G N  +W  TG+GKT  +   ++   +  D  KV+ LV+
Sbjct  239  MAMRPYQVYAVEALIQQATETGNNGYVWHTTGSGKTLTSFKASQILSQQDDIKKVIFLVD  298

Query  56   RVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE  115
            R  L +Q  EEF +   G    T  +  +  +     L     L++ T + +  A+    
Sbjct  299  RKDLDSQTEEEFNKFAKGAVDKTFNTSQLVRQLNDKSLP----LIVTTIQKMAKAIQGNA  354

Query  116  EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGA  175
                   T   + ++DECH +    ++ ++   +            Q  G T +P     
Sbjct  355  PLLEQYKTNKVVFIIDECHRSQFGDMHRLVKQHFKN---------AQYFGFTGTPRFPEN  405

Query  176  SKLDG  180
            S  DG
Sbjct  406  SSQDG  410


>sp|Q7SH33|PRP5_NEUCR Pre-mRNA-processing ATP-dependent RNA helicase 
prp-5 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A 
/ CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=prp-5 
PE=3 SV=1
Length=1194

 Score = 136 bits (341),  Expect = 1e-31, Method: Composition-based stats.
 Identities = 64/346 (18%), Positives = 116/346 (34%), Gaps = 48/346 (14%)

Query  204  CPQLQEHSQQ-PCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELS--RKFGTQMYEQ  260
             P L+    Q P    +        P  +L  ++   +    +  +L     +G    + 
Sbjct  617  LPMLRHVKDQDPVTGDDGAIALIMTPTRELCTQIYSDLQPFAKALKLRVVAAYGGNAIKD  676

Query  261  QVVKLSEAAALAGLQEQRVYAL---------HLRRYNDALLIHDTVRAVD----------  301
            Q+ +L   A +      R+  L         +L+R    L++ +  R  D          
Sbjct  677  QIAELKRGAEIIVATPGRLIDLLAANGGRVTNLKR-ATYLVLDEADRMFDMGFEPQVMKI  735

Query  302  ----------ALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKL  351
                       L +       + +TK  +       +        E+  +     E  K 
Sbjct  736  FNNVRPDRQTILFSATMPRIIDALTKKVLRDPVEITVGGRSVVAPEITQIVEVMDEGKKF  795

Query  352  EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ  411
              L ++L   ++  +  R +IF   ++ A  LL  L ++              G G  S 
Sbjct  796  NRLLELLGELYADDDDVRSLIFVERQEKADDLLRELLRR--------------GYGCMSI  841

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
                 Q D+   I  F+ G   +L+ATS+A  GLD+    +V+ Y    +    V   GR
Sbjct  842  HGGKDQEDRNSTISDFKKGVCPILIATSIAARGLDVKQLKLVINYDAPNHLEDYVHRAGR  901

Query  472  -ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQA  516
              RA  +  A       +E     I +ALE   +     + +M +A
Sbjct  902  TGRAGNTGTAVTFITEEQENCASGIAKALEQSGQPVPDRLNEMRKA  947


 Score = 69.8 bits (169),  Expect = 6e-11, Method: Composition-based stats.
 Identities = 57/324 (18%), Positives = 108/324 (33%), Gaps = 31/324 (10%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLET------VDGAKVVVLVNRVHLV  60
            Q + +   + G+++I    TG+GKT A A    RH++        DGA  +++     L 
Sbjct  588  QMQALPVIMSGRDVIGVAKTGSGKTMAFALPMLRHVKDQDPVTGDDGAIALIMTPTRELC  647

Query  61   TQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
            TQ   + +      +  V    G    +     L R  ++++ T   L   L +      
Sbjct  648  TQIYSDLQPFAKALKLRVVAAYGGNAIKDQIAELKRGAEIIVATPGRLIDLLAANGGR-V  706

Query  120  VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQ-----PLPQVL-GLTA----S  169
              L   + +V+DE            +M  +  ++  R        +P+++  LT      
Sbjct  707  TNLKRATYLVLDEADRMFDMGFEPQVMKIFNNVRPDRQTILFSATMPRIIDALTKKVLRD  766

Query  170  PGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYN-LCHRRSQDP  228
            P              + Q+   +D        N   +L             L     Q+ 
Sbjct  767  PVEITVGGRSVVAPEITQIVEVMDEGKKF---NRLLELLGELYADDDDVRSLIFVERQEK  823

Query  229  FGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN  288
              DLL++L+ + +  + +         Q      +   +      L    + A  L    
Sbjct  824  ADDLLRELLRRGYGCMSIHGGK----DQEDRNSTISDFKKGVCPILIATSIAARGLDVKQ  879

Query  289  DALLIHDTVRAVDALAALQDFYHR  312
              L+I+      DA   L+D+ HR
Sbjct  880  LKLVIN-----YDAPNHLEDYVHR  898


>sp|Q0D8N0|RH53_ORYSJ DEAD-box ATP-dependent RNA helicase 53 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os07g0143700 PE=2 
SV=2
Length=602

 Score = 134 bits (336),  Expect = 1e-31, Method: Composition-based stats.
 Identities = 48/204 (24%), Positives = 85/204 (42%), Gaps = 20/204 (10%)

Query  298  RAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPEN-PKLEMLEK  356
            R     +A    + R+  +K         L+   D +  E   L +   E+  K  +L  
Sbjct  261  RQSMLFSATMPSWIRKITSKYLKDPIIIDLVGDEDQKLPEGISLYSIASEHYGKPSILGP  320

Query  357  ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT  416
            +++     +N  + I+FT+T++ A  L   + +           Q L G         ++
Sbjct  321  LIKEH---ANGGKCIVFTQTKREADRLAYAMGRSYA-------CQALHG--------DIS  362

Query  417  QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARAD  475
            Q  ++  +  F+DG  N+LVAT VA  GLDIP+ ++V+ Y L       V   GR ARA 
Sbjct  363  QNQRERTLSGFRDGRFNILVATDVAARGLDIPNVDLVIHYELPNTSELFVHRSGRTARAG  422

Query  476  QSVYAFVATEGSRELKRELINEAL  499
            +   A +     +     +I + +
Sbjct  423  KKGSAILIYTNDQARAVRIIEQDI  446


 Score = 56.7 bits (135),  Expect = 5e-07, Method: Composition-based stats.
 Identities = 29/134 (22%), Positives = 49/134 (37%), Gaps = 13/134 (10%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTR---AAAY-VAKRHLETVDGAK---VVVLVNRVHL  59
            Q  V+ PA++GK++I    TG GKT            RH E     +    ++L     L
Sbjct  111  QRAVLDPAMQGKDMIGRARTGTGKTLAFGIPIMDRILRHNEKNGSGRNPLAIILAPTREL  170

Query  60   VTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
              Q  +EF+           + G +        L    D+++ T   +   L        
Sbjct  171  ARQVEKEFKESAPLDSLC--VYGGVPISHQMRALNYGVDVVVGTPGRIIDLL----RRGV  224

Query  120  VELTVFSLIVVDEC  133
            + L+    +V+DE 
Sbjct  225  LNLSEIQFVVLDEA  238


>sp|Q756G5|DBP8_EREGS ATP-dependent RNA helicase DBP8 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=DBP8 PE=3 SV=1
Length=435

 Score = 131 bits (329),  Expect = 1e-31, Method: Composition-based stats.
 Identities = 52/207 (25%), Positives = 84/207 (41%), Gaps = 25/207 (12%)

Query  346  PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
            PE+ K   L ++L  +   S S   I+F     SA  L   L Q +      IR   L  
Sbjct  239  PEHVKEAYLYQVLSSEEYKSKS--AIVFVNRTISAEILRRMLMQLE------IRVTSL--  288

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM  465
                   + M QR++   +Q+F+     +L+AT VA  GLDIP   +VV Y +  N  + 
Sbjct  289  ------HSQMPQRERTNSLQRFRANAARVLIATDVASRGLDIPAVQLVVNYDIPANPDTY  342

Query  466  VQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD  524
            +   GR ARA +   A       +++ R  I    E + ++     +  D A  +  +  
Sbjct  343  IHRAGRTARAGRGGEALSFI-APKDVSR--IQAIEERIGKKMDEFTKVGDTALIRKSLNK  399

Query  525  LQQAALTKRAAQ-----AAQRENQRQQ  546
            +  A      A        +R+ QR +
Sbjct  400  VTVAKRESLMAMDKEGFGERRKTQRSK  426


 Score = 48.3 bits (113),  Expect = 2e-04, Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 41/113 (36%), Gaps = 8/113 (7%)

Query  26   TGAGKT--RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ---HGEEFRRMLDGRWTVTTL  80
            TG+GKT   AA  + K   +   G   +VL     L  Q          +++ R  +   
Sbjct  52   TGSGKTIAFAAPMLTKWSADPC-GMFGIVLTPTRELAMQIAEQFTALGSVMNIRVALVVG  110

Query  81   SGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC  133
              D+  +A    L R    +I T   L   +    E+    L     +V+DE 
Sbjct  111  GEDIVSQAL--ELQRKPHFIIATPGRLAHHIMHSGEDTIGGLKRVRYLVLDEA  161


>sp|P21507|SRMB_ECOLI ATP-dependent RNA helicase SrmB OS=Escherichia 
coli (strain K12) OX=83333 GN=srmB PE=1 SV=1
Length=444

 Score = 131 bits (330),  Expect = 1e-31, Method: Composition-based stats.
 Identities = 58/278 (21%), Positives = 97/278 (35%), Gaps = 49/278 (18%)

Query  286  RYNDALLIHDTVRAVDALAALQDFYHREHVTKTQI------LCAERRLLALFDDRKNELA  339
            R  + L++ +  R +D +   QD  H    T+ +          E   +  F +R  E  
Sbjct  149  RAVETLILDEADRMLD-MGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQDFAERLLEDP  207

Query  340  HLATHGP---ENPK----------LEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLW  386
               +  P   E  K          LE    +L        + R I+F R R+  H L  W
Sbjct  208  VEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANW  267

Query  387  LQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLD  446
            L++               G  N      M Q  + E I++  +G +N+LVAT VA  G+D
Sbjct  268  LREA--------------GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGID  313

Query  447  IPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQ  505
            IP  + V  + +  +  + +   GR ARA +   A    E    L    +   +E  ++ 
Sbjct  314  IPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIK-  372

Query  506  AVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQ  543
                            I +L+         Q  +   +
Sbjct  373  -------------ARVIDELRPKTRAPSEKQTGKPSKK  397


 Score = 53.6 bits (127),  Expect = 4e-06, Method: Composition-based stats.
 Identities = 27/129 (21%), Positives = 52/129 (40%), Gaps = 14/129 (11%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK-----VVVLVNRVHLVTQ---HGEE  66
            L+G++++   PTG GKT A    A +HL      K     +++L     L  Q   H  E
Sbjct  39   LDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARE  98

Query  67   FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS  126
              +       + T++G +         +   D+++ T   L   +    +EE+ +     
Sbjct  99   LAKHT--HLDIATITGGVAYMNHAEVFSENQDIVVATTGRLLQYI----KEENFDCRAVE  152

Query  127  LIVVDECHH  135
             +++DE   
Sbjct  153  TLILDEADR  161


>sp|P24783|DBP2_YEAST ATP-dependent RNA helicase DBP2 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DBP2 
PE=1 SV=1
Length=546

 Score = 133 bits (334),  Expect = 1e-31, Method: Composition-based stats.
 Identities = 56/288 (19%), Positives = 105/288 (36%), Gaps = 45/288 (16%)

Query  253  FGTQMYEQQVVKLSEAAALAGLQEQRVY------ALHLRRYNDALLIHDTVRAVD-----  301
            +G     QQ+  LS  + +      R+         +L+R    L++ +  R +D     
Sbjct  221  YGGVPKSQQIRDLSRGSEIVIATPGRLIDMLEIGKTNLKR-VTYLVLDEADRMLDMGFEP  279

Query  302  ----ALAALQDFYHREHVTKTQILCAER----RLLALFDDRKNELAHLATHG--------  345
                 +  ++        + T     ++     L      +   L   A+H         
Sbjct  280  QIRKIVDQIRPDRQTLMWSATWPKEVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVV  339

Query  346  PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
             +  K + L K L    S  N  + +IF  T++    +  +L++               G
Sbjct  340  SDFEKRDRLNKYL-ETASQDNEYKTLIFASTKRMCDDITKYLRED--------------G  384

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM  465
                +      QR++  V+Q+F++G   ++VAT VA  G+D+   N V+ Y +  N    
Sbjct  385  WPALAIHGDKDQRERDWVLQEFRNGRSPIMVATDVAARGIDVKGINYVINYDMPGNIEDY  444

Query  466  VQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQ  511
            V   GR  RA  +  A    TE ++ L  +LI+   E         ++
Sbjct  445  VHRIGRTGRAGATGTAISFFTEQNKGLGAKLISIMREANQNIPPELLK  492


 Score = 49.8 bits (117),  Expect = 6e-05, Method: Composition-based stats.
 Identities = 32/129 (25%), Positives = 49/129 (38%), Gaps = 11/129 (9%)

Query  14   ALEGKNIIIWLPTGAGKTR------AAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEF  67
            AL G++++    TG+GKT            A+  L   DG  V+VL     L  Q   E 
Sbjct  147  ALSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQTEC  206

Query  68   RRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS  126
             +     R   T + G +        L+R  +++I T   L   L    E     L   +
Sbjct  207  SKFGHSSRIRNTCVYGGVPKSQQIRDLSRGSEIVIATPGRLIDML----EIGKTNLKRVT  262

Query  127  LIVVDECHH  135
             +V+DE   
Sbjct  263  YLVLDEADR  271


>sp|A6ZRX0|DBP2_YEAS7 ATP-dependent RNA helicase DBP2 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=DBP2 PE=3 SV=1
Length=546

 Score = 133 bits (334),  Expect = 1e-31, Method: Composition-based stats.
 Identities = 56/288 (19%), Positives = 105/288 (36%), Gaps = 45/288 (16%)

Query  253  FGTQMYEQQVVKLSEAAALAGLQEQRVY------ALHLRRYNDALLIHDTVRAVD-----  301
            +G     QQ+  LS  + +      R+         +L+R    L++ +  R +D     
Sbjct  221  YGGVPKSQQIRDLSRGSEIVIATPGRLIDMLEIGKTNLKR-VTYLVLDEADRMLDMGFEP  279

Query  302  ----ALAALQDFYHREHVTKTQILCAER----RLLALFDDRKNELAHLATHG--------  345
                 +  ++        + T     ++     L      +   L   A+H         
Sbjct  280  QIRKIVDQIRPDRQTLMWSATWPKEVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVV  339

Query  346  PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
             +  K + L K L    S  N  + +IF  T++    +  +L++               G
Sbjct  340  SDFEKRDRLNKYL-ETASQDNEYKTLIFASTKRMCDDITKYLRED--------------G  384

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM  465
                +      QR++  V+Q+F++G   ++VAT VA  G+D+   N V+ Y +  N    
Sbjct  385  WPALAIHGDKDQRERDWVLQEFRNGRSPIMVATDVAARGIDVKGINYVINYDMPGNIEDY  444

Query  466  VQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQ  511
            V   GR  RA  +  A    TE ++ L  +LI+   E         ++
Sbjct  445  VHRIGRTGRAGATGTAISFFTEQNKGLGAKLISIMREANQNIPPELLK  492


 Score = 49.8 bits (117),  Expect = 6e-05, Method: Composition-based stats.
 Identities = 32/129 (25%), Positives = 49/129 (38%), Gaps = 11/129 (9%)

Query  14   ALEGKNIIIWLPTGAGKTR------AAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEF  67
            AL G++++    TG+GKT            A+  L   DG  V+VL     L  Q   E 
Sbjct  147  ALSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQTEC  206

Query  68   RRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS  126
             +     R   T + G +        L+R  +++I T   L   L    E     L   +
Sbjct  207  SKFGHSSRIRNTCVYGGVPKSQQIRDLSRGSEIVIATPGRLIDML----EIGKTNLKRVT  262

Query  127  LIVVDECHH  135
             +V+DE   
Sbjct  263  YLVLDEADR  271


>sp|A6RW79|PRP5_BOTFB Pre-mRNA-processing ATP-dependent RNA helicase 
prp5 OS=Botryotinia fuckeliana (strain B05.10) OX=332648 
GN=prp5 PE=3 SV=2
Length=1179

 Score = 135 bits (340),  Expect = 2e-31, Method: Composition-based stats.
 Identities = 59/340 (17%), Positives = 114/340 (34%), Gaps = 45/340 (13%)

Query  212  QQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAA  269
            Q+P K  +        P  +L  ++  +    L+   L     +G  + + Q+  L   A
Sbjct  619  QRPLKGSDGPIGLIMTPTRELATQIHKECKPFLKAMGLRAVCAYGGAIIKDQIADLKRGA  678

Query  270  ALAGLQEQRVYAL--------HLRRYNDALLIHDTVRAVD-------------ALAALQD  308
             +      R+  L           +    +++ +  R  D                  Q 
Sbjct  679  EIIVCTPGRMIELLAANSGRVTNLQRVTYVVLDEADRMFDMGFEPQVMKVFNNIRPNRQT  738

Query  309  FYHREHVTKTQILCAERRLLALFDDRK-------NELAHLATHGPENPKLEMLEKILQRQ  361
                  + +     A++ L +  +           E+  +     E  K   L ++L   
Sbjct  739  ILFSATMPRIMDALAKKTLQSPVEIVVGGRSVVAPEITQIVEVREEKEKFHRLLELLGEL  798

Query  362  FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ  421
            +++    R +IF   ++ A  LL  L ++              G    S      Q D+ 
Sbjct  799  YNTDEDARTLIFVDRQEKADDLLKDLMRK--------------GYPCMSIHGGKDQVDRD  844

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYA  480
              I  F+ G + +++ATSVA  GLD+    +VV +    +    V   GR  RA  +  A
Sbjct  845  STIDDFKAGVVPIMIATSVAARGLDVKQLKLVVNFDAPNHLEDYVHRAGRTGRAGNTGTA  904

Query  481  FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA  520
                   +E     I +ALE   ++    + +M ++    
Sbjct  905  VTFITEEQEQYSVGIAKALEQSGQEVPDRLNEMRKSYKDK  944


 Score = 75.2 bits (183),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 62/328 (19%), Positives = 113/328 (34%), Gaps = 39/328 (12%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYV-AKRHLETVDGAK------VVVLVNRVHL  59
            Q + I   + G+++I    TG+GKT  A  +   RH+      K       +++     L
Sbjct  581  QMQAIPAIMSGRDVIGVAKTGSGKT-IAFLLPMFRHIRDQRPLKGSDGPIGLIMTPTREL  639

Query  60   VTQHGEEFRRMLD--GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE  117
             TQ  +E +  L   G   V    G +        L R  ++++CT   +   L +    
Sbjct  640  ATQIHKECKPFLKAMGLRAVCAYGGAIIKDQI-ADLKRGAEIIVCTPGRMIELLAANSGR  698

Query  118  EHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQ-----PLPQVLGLTA----  168
                L   + +V+DE            +M  +  ++  R        +P+++   A    
Sbjct  699  -VTNLQRVTYVVLDEADRMFDMGFEPQVMKVFNNIRPNRQTILFSATMPRIMDALAKKTL  757

Query  169  -SP---GTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRR  224
             SP     GG S +   I  ++++                  L E          L    
Sbjct  758  QSPVEIVVGGRSVVAPEITQIVEV-----REEKEKFHRLLELLGELYNTDEDARTLIFVD  812

Query  225  SQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHL  284
             Q+   DLLK LM + +  + +         Q+     +   +A  +  +    V A  L
Sbjct  813  RQEKADDLLKDLMRKGYPCMSIHGGK----DQVDRDSTIDDFKAGVVPIMIATSVAARGL  868

Query  285  RRYNDALLIHDTVRAVDALAALQDFYHR  312
                  L+++      DA   L+D+ HR
Sbjct  869  DVKQLKLVVN-----FDAPNHLEDYVHR  891


>sp|A7TK63|DBP8_VANPO ATP-dependent RNA helicase DBP8 OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=DBP8 PE=3 SV=1
Length=431

 Score = 131 bits (328),  Expect = 2e-31, Method: Composition-based stats.
 Identities = 47/212 (22%), Positives = 89/212 (42%), Gaps = 27/212 (13%)

Query  346  PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
            PE+ K   L ++L            I+F     +A  L   L+  +              
Sbjct  235  PEHVKEAYLYQLLTC--EDYKDSSVIVFVNRTTAAEVLRRTLRSLE--------------  278

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM  465
               +S  + M Q ++   +Q+F+     +L+AT VA  GLDIP   +V+ Y +  +  + 
Sbjct  279  VRVASLHSQMPQSERINSLQRFRANAARVLIATDVAARGLDIPTVELVINYDIPQDPDTF  338

Query  466  VQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM-DQAEYQAKIR  523
            +   GR ARA +S  A       R++ R    EA+E  + + +   +K+ D A  +  + 
Sbjct  339  IHRSGRTARAGRSGDAISFVT-PRDVSRI---EAIEERINKKMDECKKVHDTAVIRKALT  394

Query  524  DLQQAAL-----TKRAAQAAQRENQRQQFPVE  550
             + +A        ++A    +R+ Q+++   E
Sbjct  395  KVTKAKRESLMDMEKANFGEKRKTQKKKNLAE  426


 Score = 48.6 bits (114),  Expect = 1e-04, Method: Composition-based stats.
 Identities = 32/130 (25%), Positives = 48/130 (37%), Gaps = 4/130 (3%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAY--VAKRHLETVDGAKVVVLVNRVHLVTQHG  64
            Q   I   L+G++ I    TG+GKT  A    +  +  +   G   VVL     L  Q  
Sbjct  29   QKHCIPEILKGRDCIGGAKTGSGKT-IAFAGPMLSQWSDDPSGMFGVVLTPTRELAIQIA  87

Query  65   EEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELT  123
            E+F  +       V  + G          L +    +I T   L   + S  EE    L+
Sbjct  88   EQFTALGSSMNIRVCLVVGGESIVKQALELQKKPHFIIATPGRLAHHILSSGEEVVGGLS  147

Query  124  VFSLIVVDEC  133
                +V+DE 
Sbjct  148  RVKYLVLDEA  157


>sp|Q8K9H6|DEAD_BUCAP ATP-dependent RNA helicase DeaD OS=Buchnera 
aphidicola subsp. Schizaphis graminum (strain Sg) OX=198804 
GN=deaD PE=3 SV=1
Length=601

 Score = 133 bits (334),  Expect = 2e-31, Method: Composition-based stats.
 Identities = 59/328 (18%), Positives = 114/328 (35%), Gaps = 43/328 (13%)

Query  207  LQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLS  266
            L  +     K   +            + +       ++    +   +G Q YE Q+  L 
Sbjct  64   LLHNLNINLKAPQILVLAPTRELAVQVAEAFSDFSKYIMGIHVLPLYGGQRYEVQLRALR  123

Query  267  EAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERR  326
            +   +      R+   HL+R     L +     +D    +      E V        +  
Sbjct  124  QGPQIVVGTPGRLLD-HLKRG-TLNLSNLYALVLDEADEMLRMGFIEDVETIMSQIPKEH  181

Query  327  LLALFDDRKNE----LAHLATHGPENPKLE------------------MLEKILQRQFSS  364
              ALF     E    ++      P+  K++                       L R    
Sbjct  182  QTALFSATMPEAIRRISKRFMKNPQEIKIQSNITTRPDIKQSYWMVYGRKTDALIRFLEV  241

Query  365  SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI  424
             +    IIF +T+ +   +   L++               G  +++ +  M Q  +++ +
Sbjct  242  EDFSATIIFVKTKNATLEVSEALERN--------------GYNSAALNGDMNQALREQTL  287

Query  425  QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVA  483
            ++ + G L++L+AT VA  GLD+   + V+ Y +  +  S V   GR  RA ++  A + 
Sbjct  288  ERLKSGRLDILIATDVAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRAGRALLF  347

Query  484  TEGSRELKRELINEALETLMEQAVAAVQ  511
             E     +R L N  +E  + Q +  VQ
Sbjct  348  VENRE--RRLLRN--IERTINQTIPEVQ  371


 Score = 54.0 bits (128),  Expect = 3e-06, Method: Composition-based stats.
 Identities = 28/122 (23%), Positives = 47/122 (39%), Gaps = 7/122 (6%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGEEFRRMLD-  72
            LEG++++    TG+GKT A +     +L     A +++VL     L  Q  E F      
Sbjct  41   LEGRDVLGMAQTGSGKTAAFSLPLLHNLNINLKAPQILVLAPTRELAVQVAEAFSDFSKY  100

Query  73   -GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVD  131
                 V  L G          L +   +++ T   L   L    +   + L+    +V+D
Sbjct  101  IMGIHVLPLYGGQRYEVQLRALRQGPQIVVGTPGRLLDHL----KRGTLNLSNLYALVLD  156

Query  132  EC  133
            E 
Sbjct  157  EA  158


>sp|Q7Y183|RH10_ORYSJ DEAD-box ATP-dependent RNA helicase 10 OS=Oryza 
sativa subsp. japonica OX=39947 GN=RH10 PE=2 SV=1
Length=472

 Score = 131 bits (329),  Expect = 2e-31, Method: Composition-based stats.
 Identities = 72/371 (19%), Positives = 132/371 (36%), Gaps = 60/371 (16%)

Query  214  PCKQYNLCHRRSQDPFGDLLK---KLMDQIHDHLEMPELSRKF------GTQMYEQQVVK  264
            P  Q  L   + Q  F  +L    +L  QI    E    +         G     QQ V 
Sbjct  98   PIIQALLKQDKPQALFACVLSPTRELAFQIGQQFEALGSAIGLSCTVLVGGVDRVQQAVS  157

Query  265  LSEAAALAGLQEQRV--YALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILC  322
            L++   +      R+  +    + ++   L +  +   D L  ++    ++ +     + 
Sbjct  158  LAKRPHIVVGTPGRLLDHLTDTKGFSLNKLKYLVLDEADKLLNVE---FQKALDDILNVI  214

Query  323  AERRLLALFD----DRKNELAHLATHGPEN----PKLEMLEKILQRQFSSSNSPR-----  369
             + R   LF     ++ ++L       P       K   ++ + Q  +      +     
Sbjct  215  PKERRTFLFSATMTNKVSKLQRACLRNPVKVEVASKYSTVDTLRQEFYFVPADYKDCFLV  274

Query  370  ----------GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRD  419
                       +IF RT +S   L L L+  +                  S S  M+Q  
Sbjct  275  HVLNELPGSMIMIFVRTCESTRLLALTLRNLRFKAI--------------SISGQMSQDK  320

Query  420  QQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSV  478
            +   + +F+    N+L+ T VA  GLDI   +VV+ Y +  N    V   GR ARA  + 
Sbjct  321  RLGALNRFKTKDCNILICTDVASRGLDIQGVDVVINYDIPMNSKDYVHRVGRTARAGNTG  380

Query  479  YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAE---YQAKIRDLQQAALTKRAA  535
            YA         +      + +E L+   +   +K+D AE    + +I D ++ ALT    
Sbjct  381  YAVSLVNQYEAMWF----KMIEKLLGYEIPD-RKVDNAEIMILRERISDSKRIALTTMKE  435

Query  536  QAAQRENQRQQ  546
                ++ +R+ 
Sbjct  436  GGGHKKKRRKN  446


 Score = 62.9 bits (151),  Expect = 5e-09, Method: Composition-based stats.
 Identities = 54/318 (17%), Positives = 105/318 (33%), Gaps = 28/318 (9%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVV---LVNRVHLVT--  61
            Q E I  ALEG+++I    TG+GKT A A    + L   D  + +    L     L    
Sbjct  68   QAEAIPHALEGRDLIGLGQTGSGKTGAFALPIIQALLKQDKPQALFACVLSPTRELAFQI  127

Query  62   -QHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
             Q  E     +    + T L G +        LA+   +++ T   L   LT  +     
Sbjct  128  GQQFEALGSAIGL--SCTVLVGGVDRVQQAVSLAKRPHIVVGTPGRLLDHLTDTKG---F  182

Query  121  ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG  180
             L     +V+DE      D + NV   + L+  L       +    +A+     +     
Sbjct  183  SLNKLKYLVLDEA-----DKLLNVEFQKALDDILNVIPKERRTFLFSATMTNKVSKLQRA  237

Query  181  AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI  240
             + + +++          +      +         K   L H  ++ P    +  +  + 
Sbjct  238  CLRNPVKVE---VASKYSTVDTLRQEFY-FVPADYKDCFLVHVLNELPGS--MIMIFVRT  291

Query  241  HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV  300
             +   +  L+ +           ++S+   L  L   +    ++    D       ++ V
Sbjct  292  CESTRLLALTLRNLRFKAISISGQMSQDKRLGALNRFKTKDCNILICTDVASRGLDIQGV  351

Query  301  DALAAL------QDFYHR  312
            D +         +D+ HR
Sbjct  352  DVVINYDIPMNSKDYVHR  369


>sp|A2XKG2|RH10_ORYSI DEAD-box ATP-dependent RNA helicase 10 OS=Oryza 
sativa subsp. indica OX=39946 GN=RH10 PE=1 SV=1
Length=472

 Score = 131 bits (329),  Expect = 2e-31, Method: Composition-based stats.
 Identities = 72/371 (19%), Positives = 132/371 (36%), Gaps = 60/371 (16%)

Query  214  PCKQYNLCHRRSQDPFGDLLK---KLMDQIHDHLEMPELSRKF------GTQMYEQQVVK  264
            P  Q  L   + Q  F  +L    +L  QI    E    +         G     QQ V 
Sbjct  98   PIIQALLKQDKPQALFACVLSPTRELAFQIGQQFEALGSAIGLSCTVLVGGVDRVQQAVS  157

Query  265  LSEAAALAGLQEQRV--YALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILC  322
            L++   +      R+  +    + ++   L +  +   D L  ++    ++ +     + 
Sbjct  158  LAKRPHIVVGTPGRLLDHLTDTKGFSLNKLKYLVLDEADKLLNVE---FQKALDDILNVI  214

Query  323  AERRLLALFD----DRKNELAHLATHGPEN----PKLEMLEKILQRQFSSSNSPR-----  369
             + R   LF     ++ ++L       P       K   ++ + Q  +      +     
Sbjct  215  PKERRTFLFSATMTNKVSKLQRACLRNPVKVEVASKYSTVDTLRQEFYFVPADYKDCFLV  274

Query  370  ----------GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRD  419
                       +IF RT +S   L L L+  +                  S S  M+Q  
Sbjct  275  HVLNELPGSMIMIFVRTCESTRLLALTLRNLRFKAI--------------SISGQMSQDK  320

Query  420  QQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSV  478
            +   + +F+    N+L+ T VA  GLDI   +VV+ Y +  N    V   GR ARA  + 
Sbjct  321  RLGALNRFKTKDCNILICTDVASRGLDIQGVDVVINYDIPMNSKDYVHRVGRTARAGNTG  380

Query  479  YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAE---YQAKIRDLQQAALTKRAA  535
            YA         +      + +E L+   +   +K+D AE    + +I D ++ ALT    
Sbjct  381  YAVSLVNQYEAMWF----KMIEKLLGYEIPD-RKVDNAEIMILRERISDSKRIALTTMKE  435

Query  536  QAAQRENQRQQ  546
                ++ +R+ 
Sbjct  436  GGGHKKKRRKN  446


 Score = 62.9 bits (151),  Expect = 5e-09, Method: Composition-based stats.
 Identities = 54/318 (17%), Positives = 105/318 (33%), Gaps = 28/318 (9%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVV---LVNRVHLVT--  61
            Q E I  ALEG+++I    TG+GKT A A    + L   D  + +    L     L    
Sbjct  68   QAEAIPHALEGRDLIGLGQTGSGKTGAFALPIIQALLKQDKPQALFACVLSPTRELAFQI  127

Query  62   -QHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
             Q  E     +    + T L G +        LA+   +++ T   L   LT  +     
Sbjct  128  GQQFEALGSAIGL--SCTVLVGGVDRVQQAVSLAKRPHIVVGTPGRLLDHLTDTKG---F  182

Query  121  ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG  180
             L     +V+DE      D + NV   + L+  L       +    +A+     +     
Sbjct  183  SLNKLKYLVLDEA-----DKLLNVEFQKALDDILNVIPKERRTFLFSATMTNKVSKLQRA  237

Query  181  AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI  240
             + + +++          +      +         K   L H  ++ P    +  +  + 
Sbjct  238  CLRNPVKVE---VASKYSTVDTLRQEFY-FVPADYKDCFLVHVLNELPGS--MIMIFVRT  291

Query  241  HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV  300
             +   +  L+ +           ++S+   L  L   +    ++    D       ++ V
Sbjct  292  CESTRLLALTLRNLRFKAISISGQMSQDKRLGALNRFKTKDCNILICTDVASRGLDIQGV  351

Query  301  DALAAL------QDFYHR  312
            D +         +D+ HR
Sbjct  352  DVVINYDIPMNSKDYVHR  369


>sp|Q9P6N8|RRP3_SCHPO ATP-dependent rRNA helicase rrp3 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=rrp3 
PE=3 SV=1
Length=465

 Score = 131 bits (328),  Expect = 3e-31, Method: Composition-based stats.
 Identities = 73/409 (18%), Positives = 144/409 (35%), Gaps = 51/409 (12%)

Query  164  LGL-TASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCH  222
            LG  T +P    A  +      V+ L     T    +     P +QE    P   + +  
Sbjct  64   LGFKTPTPIQQEAIPVVLNKRDVIGLAQ---TGSGKTAAFALPVIQELWNNPSPFFAVVL  120

Query  223  RRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYAL  282
              +++     + +  + I   + +  +    G      Q V LS+   +      R+   
Sbjct  121  APTRE-LAYQISEQFEAIGGSIGVRSVV-IVGGMDMVTQAVALSKKPHVLVCTPGRL-MD  177

Query  283  HLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFD----DRKNEL  338
            HL       L +     +D    L D      + K   +    R   LF      +  +L
Sbjct  178  HLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPHERRTLLFSATMTSKVEKL  237

Query  339  AHLATHGPE----NPKLEMLEKILQRQFSSSNSPR---------------GIIFTRTRQS  379
               + H P     + K   ++ ++QR        +                IIF RT   
Sbjct  238  QRASLHQPVRVAVSSKFSTVDTLIQRYLFFPFKHKDTYLVYLVNELAGNSIIIFARTVND  297

Query  380  AHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATS  439
               L + L+               +G         ++Q ++   + KF+ G  + LVAT 
Sbjct  298  TQRLAILLRT--------------LGFSAIPLHGQLSQSNRLGALNKFKSGARSTLVATD  343

Query  440  VAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEA  498
            VA  GLDIP  +VV+ Y + T+  + +   GR ARA ++  +        +L+  L    
Sbjct  344  VAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARAGRAGKSIALVTQ-YDLEPFLR---  399

Query  499  LETLMEQAVAAVQKMDQAEY--QAKIRDLQQAALTKRAAQAAQRENQRQ  545
            +E  + + +   +   +  +    ++ + Q+ A+ +      +R+++ +
Sbjct  400  IEATIGKKMQEYEIDKEGVFLLSERVGEAQREAIIQMKEIHDRRKSKGK  448


 Score = 66.0 bits (159),  Expect = 5e-10, Method: Composition-based stats.
 Identities = 33/133 (25%), Positives = 49/133 (37%), Gaps = 9/133 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQ---  62
            Q E I   L  +++I    TG+GKT A A  V +           VVL     L  Q   
Sbjct  73   QQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNPSPFFAVVLAPTRELAYQISE  132

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
              E     +  R  V     DM  +A    L++   +L+CT   L   L + +      L
Sbjct  133  QFEAIGGSIGVRSVVIVGGMDMVTQAV--ALSKKPHVLVCTPGRLMDHLENTKG---FSL  187

Query  123  TVFSLIVVDECHH  135
                 +++DE   
Sbjct  188  KNLKYLIMDEADR  200


>sp|P0CQ78|DBP3_CRYNJ ATP-dependent RNA helicase DBP3 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=DBP3 PE=3 SV=1
Length=605

 Score = 132 bits (333),  Expect = 3e-31, Method: Composition-based stats.
 Identities = 53/288 (18%), Positives = 94/288 (33%), Gaps = 56/288 (19%)

Query  288  NDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERR-LLALFDDRKNELAHLATHGP  346
               L++ +  R +DA     D       T       +     A + +    LA    + P
Sbjct  330  VSYLVLDEADRMLDA-GFENDIRRIIAHTPGHKEGRQTVMFSATWPESVRRLASTFLNNP  388

Query  347  -----------------------ENP--KLEMLEKILQRQF-----SSSNSPRGIIFTRT  376
                                   +NP  K   L   L+        S ++  R ++F   
Sbjct  389  LRITVGSDELSANKRIEQIVEVLDNPRDKDFRLTHHLKAHLKVHPNSKTSPTRILVFALY  448

Query  377  RQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLV  436
            ++ A  L   +++               G    +    MTQ  + + ++ F+ G  N+LV
Sbjct  449  KKEAQRLEYTIRRA--------------GYAVGALHGDMTQEARFKALEAFKTGQQNVLV  494

Query  437  ATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYA---FVATEGSRELKR  492
            AT VA  GLDIP   +V+           V   GR  RA ++  A   F      + L  
Sbjct  495  ATDVAARGLDIPDVGLVINVTFPLTTEDFVHRCGRTGRAGKTGKAVTFFTGENHEKSLAG  554

Query  493  ELI------NEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRA  534
            E +         +   M++    ++K +   Y A  ++   A    + 
Sbjct  555  EFMRVLRDVGAEIPKEMDRFPTTIKKKEHGSYGAFYKETTNAPAPTKI  602


 Score = 47.1 bits (110),  Expect = 5e-04, Method: Composition-based stats.
 Identities = 41/261 (16%), Positives = 73/261 (28%), Gaps = 42/261 (16%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA--------------KVVVLVNRVHLV  60
            L  K+++    TG+GKT A        L  +                 +++VL     L 
Sbjct  208  LSKKDVVGIAETGSGKTLAFGVPGINLLSQLPPVTGSKKGRGQVPGQIQMLVLAPTRELA  267

Query  61   TQHGEEFRRMLDGR--WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEE  118
             Q  E      +     +V    G            +   +++ T            +  
Sbjct  268  QQSHEHLSAFGEQVGLKSVCIFGGVGKDGQARELSQKDTRVVVGTPGRTLD----LADSG  323

Query  119  HVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLT--------AS-  169
             ++L+  S +V+DE          N I          +      +   T        AS 
Sbjct  324  ELDLSSVSYLVLDEADRMLDAGFENDIRRIIAHTPGHKEGRQTVMFSATWPESVRRLAST  383

Query  170  ----P-GTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRR  224
                P      S    A   + Q+   LD     +P++   +L  H +       +    
Sbjct  384  FLNNPLRITVGSDELSANKRIEQIVEVLD-----NPRDKDFRLTHHLK---AHLKVHPNS  435

Query  225  SQDPFGDLLKKLMDQIHDHLE  245
               P   L+  L  +    LE
Sbjct  436  KTSPTRILVFALYKKEAQRLE  456


>sp|Q8SRB2|DBP2_ENCCU ATP-dependent RNA helicase DBP2 OS=Encephalitozoon 
cuniculi (strain GB-M1) OX=284813 GN=DBP2 PE=3 SV=1
Length=495

 Score = 131 bits (329),  Expect = 3e-31, Method: Composition-based stats.
 Identities = 57/316 (18%), Positives = 110/316 (35%), Gaps = 41/316 (13%)

Query  212  QQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEAA  269
            QQP ++ +        P  +L+ ++   + +   M  L     +G    + Q+  L E A
Sbjct  152  QQPLRRGDGPIVLVLAPTRELVMQIKKVVDEFCGMFNLRSTAVYGGASSQPQIRALHEGA  211

Query  270  ALAGLQEQRVYALHLRRY-----NDALLIHDTVRAVD-----ALAALQDFYHREHVTKTQ  319
             +      R+  LH + +        L++ +  R +D      L  +    +    T   
Sbjct  212  EVVIATPGRLIDLHDQGHAPLSRVTFLVLDEADRMLDMGFEPQLRKIIPKTNANRQTLMW  271

Query  320  ILCAERRLLALFDDRKNELAHLATHGPE---NPKLEMLEKI---------LQRQFSSSNS  367
                 R +  L +   NE   +     E   N K++ + ++         L     +   
Sbjct  272  SATWPREVRGLAESYMNEYIQVVVGNEELKTNSKIKQIVEVCSGREKEDKLIGVLDNFKG  331

Query  368  PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF  427
             + I+F   +++   L   L +               G G ++     +Q  + +V+  F
Sbjct  332  DKVIVFCNMKRTCDDLEYVLNRS--------------GYGAAALHGDKSQNIRDKVLDDF  377

Query  428  QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAF---VAT  484
            + G   +L+AT VA  GLD+    +V+ +    +    V   GR     +         T
Sbjct  378  RSGRRPILIATEVAGRGLDVNDVKLVINFDFPGSCEDYVHRIGRTARGNTKEGISHTFFT  437

Query  485  EGSRELKRELINEALE  500
             G +   RELI    E
Sbjct  438  VGDKANARELIRMLRE  453


 Score = 57.9 bits (138),  Expect = 2e-07, Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 49/129 (38%), Gaps = 11/129 (9%)

Query  14   ALEGKNIIIWLPTGAGKTRAAAYVAKRH------LETVDGAKVVVLVNRVHLVTQHGEEF  67
            AL G++++    TG+GKT +    A  H      L   DG  V+VL     LV Q  +  
Sbjct  121  ALSGRDMVGIAQTGSGKTLSFILPALVHAKDQQPLRRGDGPIVLVLAPTRELVMQIKKVV  180

Query  68   RRM-LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS  126
                       T + G    +     L    +++I T   L        ++ H  L+  +
Sbjct  181  DEFCGMFNLRSTAVYGGASSQPQIRALHEGAEVVIATPGRLID----LHDQGHAPLSRVT  236

Query  127  LIVVDECHH  135
             +V+DE   
Sbjct  237  FLVLDEADR  245


>sp|A7EML8|RRP3_SCLS1 ATP-dependent rRNA helicase rrp3 OS=Sclerotinia 
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 
GN=rrp3 PE=3 SV=1
Length=482

 Score = 131 bits (328),  Expect = 3e-31, Method: Composition-based stats.
 Identities = 48/202 (24%), Positives = 81/202 (40%), Gaps = 26/202 (13%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K   L  +L      S     IIFTRT      + + L+               +G G  
Sbjct  283  KDTYLIYLLNEFAGQS----AIIFTRTVNETQRIAILLRT--------------LGFGAI  324

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 ++Q  +   + KF+ G+  +LVAT VA  GLDIP  +VV+ Y +  +  + +   
Sbjct  325  PLHGQLSQSSRLGALNKFRAGSREILVATDVAARGLDIPSVDVVLNYDMPQDSKTYIHRV  384

Query  470  GR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQ  527
            GR ARA +S +A    T+   E+        +E  + +     Q +       K R +++
Sbjct  385  GRTARAGKSGHAISFVTQYDVEIW-----MRIEAALGKKQEEYQTVKDEVMVFKPR-VEE  438

Query  528  AALTKRAAQAAQRENQRQQFPV  549
            A    R       E++ ++  V
Sbjct  439  AQRHARNEMKNLHEDRGKKGAV  460


 Score = 64.0 bits (154),  Expect = 2e-09, Method: Composition-based stats.
 Identities = 48/304 (16%), Positives = 106/304 (35%), Gaps = 15/304 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q E I  AL+G+++I    TG+GKT A A  + +  L+       +VL     L  Q  +
Sbjct  83   QRESIPLALQGRDLIGLAETGSGKTAAFALPILQSLLDKPQPLFGLVLAPTRELAYQISQ  142

Query  66   EFRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
             F  +    R     + G M        L +   +++ T   L   L + +      L  
Sbjct  143  SFEALGSIIRVKCAVIVGGMDMVPQAIALGKKPHIIVATPGRLLDHLENTKG---FSLRS  199

Query  125  FSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINH  184
               +V+DE      D  +  I+ + L++  +  +        +A+  +   S    ++  
Sbjct  200  LKYLVMDEADRLL-DLDFGPILDKILKVLPRERRTYL----FSATISSKVESLQRASLKD  254

Query  185  VLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHL  244
             L++  ++ +    +       +Q +   P    +       + F      +  +  +  
Sbjct  255  PLRV--SISSNKYQTVS---TLIQNYIFIPLVHKDTYLIYLLNEFAGQSAIIFTRTVNET  309

Query  245  EMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALA  304
            +   +  +           +LS+++ L  L + R  +  +    D       + +VD + 
Sbjct  310  QRIAILLRTLGFGAIPLHGQLSQSSRLGALNKFRAGSREILVATDVAARGLDIPSVDVVL  369

Query  305  ALQD  308
                
Sbjct  370  NYDM  373


>sp|P0CQ79|DBP3_CRYNB ATP-dependent RNA helicase DBP3 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=DBP3 PE=3 SV=1
Length=605

 Score = 132 bits (332),  Expect = 4e-31, Method: Composition-based stats.
 Identities = 53/288 (18%), Positives = 94/288 (33%), Gaps = 56/288 (19%)

Query  288  NDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERR-LLALFDDRKNELAHLATHGP  346
               L++ +  R +DA     D       T       +     A + +    LA    + P
Sbjct  330  VSYLVLDEADRMLDA-GFENDIRRIIAHTPGHKEGRQTVMFSATWPESVRRLASTFLNNP  388

Query  347  -----------------------ENP--KLEMLEKILQRQF-----SSSNSPRGIIFTRT  376
                                   +NP  K   L   L+        S ++  R ++F   
Sbjct  389  LRITVGSDELSANKRIEQIVEVLDNPRDKDFRLTHHLKAHLKVHPNSKTSPTRILVFALY  448

Query  377  RQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLV  436
            ++ A  L   +++               G    +    MTQ  + + ++ F+ G  N+LV
Sbjct  449  KKEAQRLEYTIRRA--------------GYAVGALHGDMTQEARFKALEAFKTGQQNVLV  494

Query  437  ATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYA---FVATEGSRELKR  492
            AT VA  GLDIP   +V+           V   GR  RA ++  A   F      + L  
Sbjct  495  ATDVAARGLDIPDVGLVINVTFPLTTEDFVHRCGRTGRAGKTGKAVTFFTGENHEKSLAG  554

Query  493  ELI------NEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRA  534
            E +         +   M++    ++K +   Y A  ++   A    + 
Sbjct  555  EFMRVLRDVGAEIPKEMDRFPTTIKKKEHGSYGAFYKETSNAPAPTKI  602


 Score = 47.1 bits (110),  Expect = 5e-04, Method: Composition-based stats.
 Identities = 41/261 (16%), Positives = 73/261 (28%), Gaps = 42/261 (16%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA--------------KVVVLVNRVHLV  60
            L  K+++    TG+GKT A        L  +                 +++VL     L 
Sbjct  208  LSKKDVVGIAETGSGKTLAFGVPGINLLSQLPPVTGSKKGRGQVPGQIQMLVLAPTRELA  267

Query  61   TQHGEEFRRMLDGR--WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEE  118
             Q  E      +     +V    G            +   +++ T            +  
Sbjct  268  QQSHEHLSAFGEQVGLKSVCIFGGVGKDGQARELSQKDTRVVVGTPGRTLD----LADSG  323

Query  119  HVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLT--------AS-  169
             ++L+  S +V+DE          N I          +      +   T        AS 
Sbjct  324  ELDLSSVSYLVLDEADRMLDAGFENDIRRIIAHTPGHKEGRQTVMFSATWPESVRRLAST  383

Query  170  ----P-GTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRR  224
                P      S    A   + Q+   LD     +P++   +L  H +       +    
Sbjct  384  FLNNPLRITVGSDELSANKRIEQIVEVLD-----NPRDKDFRLTHHLK---AHLKVHPNS  435

Query  225  SQDPFGDLLKKLMDQIHDHLE  245
               P   L+  L  +    LE
Sbjct  436  KTSPTRILVFALYKKEAQRLE  456


>sp|A2RB17|RRP3_ASPNC ATP-dependent rRNA helicase rrp3 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=rrp3 PE=3 SV=1
Length=467

 Score = 130 bits (327),  Expect = 4e-31, Method: Composition-based stats.
 Identities = 74/407 (18%), Positives = 129/407 (32%), Gaps = 53/407 (13%)

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
            +P    +  L      ++ L     T    +     P LQ   ++P   + L       P
Sbjct  72   TPIQRESIPLALKGRDLIGLAE---TGSGKTAAFALPILQALMEKPQPFFGLVLA----P  124

Query  229  FGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR  286
              +L  ++            +      G      Q + L +   +      R+   HL  
Sbjct  125  TRELAYQISKSFESLGASMGVRSCVIVGGMDMVSQSISLGKKPHIIVATPGRLLD-HLEN  183

Query  287  YNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFD----DRKNELAHLA  342
                 L +     +D    L D      + K   +    R   LF      +   L   +
Sbjct  184  TKGFSLRNLKYLVMDEADRLLDMDFGPLLDKILKVLPRERRTFLFSATMSSKVESLQRAS  243

Query  343  THGPE-----NPKLEMLEKILQRQFSSSNSPR---------------GIIFTRTRQSAHS  382
               P        K + +  +LQ         +                IIFTRT      
Sbjct  244  LSNPLRVSVSTSKYQTVSTLLQSYLFIPQKHKDLYLVYLLNEFAGQSTIIFTRTVNETQR  303

Query  383  LLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAE  442
            L   L+               +G G       ++Q  +   + KF+  + N+LVAT VA 
Sbjct  304  LAFLLRA--------------LGFGAIPLHGQLSQSARLGALGKFRARSRNILVATDVAA  349

Query  443  EGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALE  500
             GLDIP  +VV+ + L  +  S V   GR ARA +S  A     +   E+   +     +
Sbjct  350  RGLDIPSVDVVLNFDLPGDSPSYVHRVGRTARAGKSGLAISFVAQYDVEVWLRIEGALGK  409

Query  501  TLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQF  547
             L E      + M        + + Q+ A+        ++ ++ ++F
Sbjct  410  KLKEYDCPKDEVM---VLGENVAEAQRQAIMDMKDYNEKKGSRGKKF  453


 Score = 67.9 bits (164),  Expect = 1e-10, Method: Composition-based stats.
 Identities = 66/424 (16%), Positives = 134/424 (32%), Gaps = 43/424 (10%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q E I  AL+G+++I    TG+GKT A A  + +  +E       +VL     L  Q  +
Sbjct  75   QRESIPLALKGRDLIGLAETGSGKTAAFALPILQALMEKPQPFFGLVLAPTRELAYQISK  134

Query  66   EFRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
             F  +          + G M   +    L +   +++ T   L   L + +      L  
Sbjct  135  SFESLGASMGVRSCVIVGGMDMVSQSISLGKKPHIIVATPGRLLDHLENTKG---FSLRN  191

Query  125  FSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLP---QVLGLTASPGTGGASKLDGA  181
               +V+DE           ++   +  L  +  + LP   +    +A+  +   S    +
Sbjct  192  LKYLVMDEADR--------LLDMDFGPLLDKILKVLPRERRTFLFSATMSSKVESLQRAS  243

Query  182  INHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIH  241
            +++ L++     +      Q     LQ +   P K  +L      + F      +  +  
Sbjct  244  LSNPLRV-----SVSTSKYQTVSTLLQSYLFIPQKHKDLYLVYLLNEFAGQSTIIFTRTV  298

Query  242  DHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVD  301
            +  +      +           +LS++A L  L + R  + ++    D       + +VD
Sbjct  299  NETQRLAFLLRALGFGAIPLHGQLSQSARLGALGKFRARSRNILVATDVAARGLDIPSVD  358

Query  302  ALAALQ------DFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLE  355
             +           + HR   T       +  L   F  + +    L   G    KL+   
Sbjct  359  VVLNFDLPGDSPSYVHRVGRTAR---AGKSGLAISFVAQYDVEVWLRIEGALGKKLKE--  413

Query  356  KILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHM  415
                           ++       A    +   +    +    R +   G  +      M
Sbjct  414  -------YDCPKDEVMVLGENVAEAQRQAIMDMKDYN-EKKGSRGKKFGGKRSRD---EM  462

Query  416  TQRD  419
             Q +
Sbjct  463  DQEE  466


>sp|Q8GY84|RH10_ARATH DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis 
thaliana OX=3702 GN=RH10 PE=1 SV=2
Length=456

 Score = 130 bits (327),  Expect = 4e-31, Method: Composition-based stats.
 Identities = 68/371 (18%), Positives = 124/371 (33%), Gaps = 44/371 (12%)

Query  212  QQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAAL  271
            ++P   +  C           + +  + +   + +   +   G     QQ + L +   +
Sbjct  84   RRPDPAFFACVLSPTRELAIQIAEQFEALGADISL-RCAVLVGGIDRMQQTIALGKRPHV  142

Query  272  AGLQEQRVY--ALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLL-  328
                  R++      + ++   L +  +   D L   +DF    +    +I    +  L 
Sbjct  143  IVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLN-EDFEKSLNQILEEIPLERKTFLF  201

Query  329  -ALFDDRKNELAHLATHGPEN----PKLEMLEKILQRQ---------------FSSSNSP  368
             A    +  +L       P       K   ++ + Q+                 S     
Sbjct  202  SATMTKKVRKLQRACLRNPVKIEAASKYSTVDTLKQQYRFVAAKYKDCYLVYILSEMPES  261

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
              +IFTRT      L L L+               +G      S  MTQ  +   + KF+
Sbjct  262  TSMIFTRTCDGTRFLALVLRS--------------LGFRAIPISGQMTQSKRLGALNKFK  307

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGS  487
             G  N+LV T VA  GLDIP  +VV+ Y + TN    +   GR ARA +S          
Sbjct  308  AGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLV-NQ  366

Query  488  RELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQF  547
             EL+  +    +E L+ + +      +        R  +   L+    + +    +R + 
Sbjct  367  YELEWYIQ---IEKLIGKKLPEYPAEEDEVLSLLERVAEAKKLSAMNMKESGGRKRRGED  423

Query  548  PVEHVQLLCIN  558
              E  + L  N
Sbjct  424  DEESERFLGGN  434


 Score = 59.8 bits (143),  Expect = 5e-08, Method: Composition-based stats.
 Identities = 51/329 (16%), Positives = 105/329 (32%), Gaps = 40/329 (12%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT-RAAAYVAKRHLETV---------DGAKVVV---L  53
            Q E +  ALEGK++I    TG+GKT   A  + +  LE V                   L
Sbjct  36   QAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVL  95

Query  54   VNRVHLVTQHGEEFRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALT  112
                 L  Q  E+F  +  D       L G +        L +   +++ T   L   ++
Sbjct  96   SPTRELAIQIAEQFEALGADISLRCAVLVGGIDRMQQTIALGKRPHVIVATPGRLWDHMS  155

Query  113  SPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLP---QVLGLTAS  169
              +      L     +V+DE           ++   + +   Q  + +P   +    +A+
Sbjct  156  DTKG---FSLKSLKYLVLDEADR--------LLNEDFEKSLNQILEEIPLERKTFLFSAT  204

Query  170  PGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPF  229
                        + + +++ A        +      Q +       K   L +  S+ P 
Sbjct  205  MTKKVRKLQRACLRNPVKIEA---ASKYSTVDTLKQQYR-FVAAKYKDCYLVYILSEMP-  259

Query  230  GDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND  289
             +    +  +  D      L  +           +++++  L  L + +    ++    D
Sbjct  260  -ESTSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKFKAGECNILVCTD  318

Query  290  ALLIHDTVRAVDALAAL------QDFYHR  312
                   + +VD +         +D+ HR
Sbjct  319  VASRGLDIPSVDVVINYDIPTNSKDYIHR  347


>sp|Q6BGU8|DBP8_DEBHA ATP-dependent RNA helicase DBP8 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / 
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DBP8 PE=3 SV=2
Length=441

 Score = 129 bits (325),  Expect = 5e-31, Method: Composition-based stats.
 Identities = 65/408 (16%), Positives = 135/408 (33%), Gaps = 44/408 (11%)

Query  149  YLELKLQRAQPLPQ-VLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQL  207
            +    L +    P  + GL  +P    A ++      +     N+    I+  ++   Q 
Sbjct  55   FAAPMLTQWSEDPSGIYGLVLTPTRELALQIAEQFAALGS-SMNIKVSVIVGGEDIVKQA  113

Query  208  QEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSE  267
             E  ++P        R +          +         + + + +  +  +   + +   
Sbjct  114  LELQRRPHFVVATPGRLADHILNSGEDTVCGLRRVKYLILDEADRLLSNSFGGDLERCFN  173

Query  268  AAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRL  327
                   ++  ++   +     AL      +       L  F H         + +   +
Sbjct  174  ILPSTDKRQTLLFTATVTDAVRALKDRPVPK-----GKLPVFIHEVETVDKVAIPSTLSV  228

Query  328  LALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWL  387
              +F              P   K   L  IL       +    IIFT    +A  L   L
Sbjct  229  KYVFV-------------PSYVKEAYLHSILN--LPQYSDSLSIIFTNRTATAELLRRTL  273

Query  388  QQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDI  447
            ++ +                 +S  + M Q ++   + +F+ G   +L+AT VA  GLDI
Sbjct  274  RKLE--------------FRVASLHSEMPQTERTNSLHRFKAGAAKILIATDVASRGLDI  319

Query  448  PHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQA  506
            P   +VV Y +  +    +   GR ARA +   A       +++ R L   A+E  + + 
Sbjct  320  PTVELVVNYDIPADADDFIHRVGRTARAGRKGDAISIV-AEKDVDRIL---AIEERINKK  375

Query  507  VAAVQKMDQAEYQAKIRDLQQAALTKRAA-QAAQRENQRQQFPVEHVQ  553
            +  ++ +   +       L + ++ KR A     REN  ++  +   +
Sbjct  376  MDLIEDISDNKVIK--DSLNKTSVAKREAFMDMDRENFGEKRKINKSK  421


 Score = 56.0 bits (133),  Expect = 6e-07, Method: Composition-based stats.
 Identities = 28/129 (22%), Positives = 49/129 (38%), Gaps = 6/129 (5%)

Query  15   LEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQ---HGEEFRRM  70
            L+G + I    TG+GKT A AA +  +  E   G   +VL     L  Q           
Sbjct  36   LKGHDCIGGAKTGSGKTIAFAAPMLTQWSEDPSGIYGLVLTPTRELALQIAEQFAALGSS  95

Query  71   LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV  130
            ++ + +V     D+  +A    L R    ++ T   L   + +  E+    L     +++
Sbjct  96   MNIKVSVIVGGEDIVKQAL--ELQRRPHFVVATPGRLADHILNSGEDTVCGLRRVKYLIL  153

Query  131  DECHHTHKD  139
            DE      +
Sbjct  154  DEADRLLSN  162


>sp|A6SFW7|DBP2_BOTFB ATP-dependent RNA helicase dbp2 OS=Botryotinia 
fuckeliana (strain B05.10) OX=332648 GN=dbp2 PE=3 SV=3
Length=574

 Score = 131 bits (330),  Expect = 6e-31, Method: Composition-based stats.
 Identities = 71/403 (18%), Positives = 133/403 (33%), Gaps = 68/403 (17%)

Query  130  VDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLC  189
             DE         Y  +M++          P P       +P       +  +   V+ + 
Sbjct  153  FDEA----GFPAY--VMTEVKAQ----GFPAP-------TPIQSQGWPMALSGRDVVGIA  195

Query  190  ANLDTWCIMSPQNCCPQLQEHSQQPCKQY-NLCHRRSQDPFGDLLKKLMDQIHDHLEMPE  248
                T    +   C P +   + QP     +        P  +L  ++  +I    +   
Sbjct  196  E---TGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQQEITKFGKSSR  252

Query  249  LSRK--FGTQMYEQQVVKLSEAAALAGLQEQRVY------ALHLRRYNDALLIHDTVRAV  300
            +     +G      Q+  L++   +      R+         +LRR    L++ +  R +
Sbjct  253  IRNTCVYGGVPKGGQIRDLAKGVEVCIATPGRLIDMIESGKTNLRR-VTYLVLDEADRML  311

Query  301  D---------ALAALQDFYHREHVTKTQILC----AERRLLALFDDRKNELAHLATHG--  345
            D          L  ++        + T        A   L          L   A H   
Sbjct  312  DMGFEPQIRKILGQIRPDRQTCMWSATWPKEVRALASDYLNEFIQVNIGSLELSANHRIT  371

Query  346  ------PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIR  399
                   E  K + + K L++     ++ + +IFT T++ A  +  +L+Q          
Sbjct  372  QIVEVVSEFEKRDKMTKHLEKIMEDKDN-KILIFTGTKRVADDITRFLRQD---------  421

Query  400  AQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL  459
                 G    S      Q ++  V+ +F+ G   ++VAT VA  G+D+ +   V  Y   
Sbjct  422  -----GWPALSIHGDKQQNERDWVLNEFKTGKSPIMVATDVASRGIDVRNITHVFNYDYP  476

Query  460  TNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALE  500
             N    +   GR  RA Q   A  + T  +++  R+L+N   E
Sbjct  477  NNSEDYIHRIGRTGRAGQKGTAITLFTTDNQKQARDLVNVLTE  519


 Score = 52.1 bits (123),  Expect = 1e-05, Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 50/129 (39%), Gaps = 11/129 (9%)

Query  14   ALEGKNIIIWLPTGAGKTRA----AAYVA--KRHLETVDGAKVVVLVNRVHLVTQHGEEF  67
            AL G++++    TG+GKT      A      +  L   DG  V+VL     L  Q  +E 
Sbjct  185  ALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQQEI  244

Query  68   RRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS  126
             +     R   T + G +        LA+  ++ I T   L   + S +      L   +
Sbjct  245  TKFGKSSRIRNTCVYGGVPKGGQIRDLAKGVEVCIATPGRLIDMIESGKTN----LRRVT  300

Query  127  LIVVDECHH  135
             +V+DE   
Sbjct  301  YLVLDEADR  309


>sp|P0CQ74|DED1_CRYNJ ATP-dependent RNA helicase ded1 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=DED1 PE=3 SV=1
Length=637

 Score = 132 bits (331),  Expect = 6e-31, Method: Composition-based stats.
 Identities = 54/282 (19%), Positives = 97/282 (34%), Gaps = 46/282 (16%)

Query  253  FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR-----RYNDALLIHDTVRAVDALAALQ  307
            +G      Q+  L     L      R+  L  R          L++ +  R +D     +
Sbjct  282  YGGADIGSQMRALDRGCDLLSATPGRLVDLIERGKISLANVKYLVLDEADRMLDM--GFE  339

Query  308  DFYHREHVTKTQILCAERRLLALFDDRKNELAHLA-----------------THGPENPK  350
                R    +      ER+ L        E+ +LA                 T      +
Sbjct  340  PQIRRIVDEEDMPGVLERQTLMFSATFPREIQNLARSFLKEYIFLTVGRVGSTSENITQR  399

Query  351  LEMLEKILQRQF------SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI  404
            +E ++   +R        +  +    ++F  T++ A +L  +L  ++             
Sbjct  400  VEYVDDQDKRSLLLDLLLAEQSGGLILVFVETKRMADTLCDFLCSRR-------------  446

Query  405  GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
                +S     TQR+++  +  F+ G   +LVAT+VA  GLDIP+   V+ Y L  +   
Sbjct  447  -HNATSIHGDRTQREREAALYAFKSGRAPILVATAVAARGLDIPNVTHVILYDLPNDVAE  505

Query  465  MVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLME  504
                 GR  RA     +      G+  + ++LI    E   E
Sbjct  506  YTHRIGRTGRAGNVGTSTAFFNRGNTNIGKDLIELLKEANQE  547


 Score = 46.3 bits (108),  Expect = 0.001, Method: Composition-based stats.
 Identities = 31/141 (22%), Positives = 47/141 (33%), Gaps = 25/141 (18%)

Query  16   EGKNIIIWLPTGAGKT------RAAAYVAKRHLET----------VDGAKV----VVLVN  55
            +G++++    TG+GKT        +A                       KV    +VL  
Sbjct  196  DGRDLMACAQTGSGKTGGFLFPILSALFTYGPSTPPVEQDTGYGYRRTKKVYPTALVLAP  255

Query  56   RVHLVTQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP  114
               LV+Q  EE R+     W     + G     +    L R  DLL  T   L   +   
Sbjct  256  TRELVSQIHEEARKFAYRSWVRPAVVYGGADIGSQMRALDRGCDLLSATPGRLVDLI---  312

Query  115  EEEEHVELTVFSLIVVDECHH  135
             E   + L     +V+DE   
Sbjct  313  -ERGKISLANVKYLVLDEADR  332


>sp|P0CQ75|DED1_CRYNB ATP-dependent RNA helicase ded1 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=DED1 PE=3 SV=1
Length=637

 Score = 132 bits (331),  Expect = 6e-31, Method: Composition-based stats.
 Identities = 54/282 (19%), Positives = 97/282 (34%), Gaps = 46/282 (16%)

Query  253  FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR-----RYNDALLIHDTVRAVDALAALQ  307
            +G      Q+  L     L      R+  L  R          L++ +  R +D     +
Sbjct  282  YGGADIGSQMRALDRGCDLLSATPGRLVDLIERGKISLANVKYLVLDEADRMLDM--GFE  339

Query  308  DFYHREHVTKTQILCAERRLLALFDDRKNELAHLA-----------------THGPENPK  350
                R    +      ER+ L        E+ +LA                 T      +
Sbjct  340  PQIRRIVDEEDMPGVLERQTLMFSATFPREIQNLARSFLKEYIFLTVGRVGSTSENITQR  399

Query  351  LEMLEKILQRQF------SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI  404
            +E ++   +R        +  +    ++F  T++ A +L  +L  ++             
Sbjct  400  VEYVDDQDKRSLLLDLLLAEQSGGLILVFVETKRMADTLCDFLCSRR-------------  446

Query  405  GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
                +S     TQR+++  +  F+ G   +LVAT+VA  GLDIP+   V+ Y L  +   
Sbjct  447  -HNATSIHGDRTQREREAALYAFKSGRAPILVATAVAARGLDIPNVTHVILYDLPNDVAE  505

Query  465  MVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLME  504
                 GR  RA     +      G+  + ++LI    E   E
Sbjct  506  YTHRIGRTGRAGNVGTSTAFFNRGNTNIGKDLIELLKEANQE  547


 Score = 46.3 bits (108),  Expect = 0.001, Method: Composition-based stats.
 Identities = 31/141 (22%), Positives = 47/141 (33%), Gaps = 25/141 (18%)

Query  16   EGKNIIIWLPTGAGKT------RAAAYVAKRHLET----------VDGAKV----VVLVN  55
            +G++++    TG+GKT        +A                       KV    +VL  
Sbjct  196  DGRDLMACAQTGSGKTGGFLFPILSALFTYGPSTPPVEQDTGYGYRRTKKVYPTALVLAP  255

Query  56   RVHLVTQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP  114
               LV+Q  EE R+     W     + G     +    L R  DLL  T   L   +   
Sbjct  256  TRELVSQIHEEARKFAYRSWVRPAVVYGGADIGSQMRALDRGCDLLSATPGRLVDLI---  312

Query  115  EEEEHVELTVFSLIVVDECHH  135
             E   + L     +V+DE   
Sbjct  313  -ERGKISLANVKYLVLDEADR  332


>sp|A7E449|DBP2_SCLS1 ATP-dependent RNA helicase dbp2 OS=Sclerotinia 
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 
GN=dbp2 PE=3 SV=1
Length=572

 Score = 131 bits (329),  Expect = 7e-31, Method: Composition-based stats.
 Identities = 71/403 (18%), Positives = 133/403 (33%), Gaps = 68/403 (17%)

Query  130  VDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLC  189
             DE         Y  +M++          P P       +P       +  +   V+ + 
Sbjct  151  FDEA----GFPAY--VMTEVKAQ----GFPAP-------TPIQSQGWPMALSGRDVVGIA  193

Query  190  ANLDTWCIMSPQNCCPQLQEHSQQPCKQY-NLCHRRSQDPFGDLLKKLMDQIHDHLEMPE  248
                T    +   C P +   + QP     +        P  +L  ++  +I    +   
Sbjct  194  E---TGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQQEITKFGKSSR  250

Query  249  LSRK--FGTQMYEQQVVKLSEAAALAGLQEQRVY------ALHLRRYNDALLIHDTVRAV  300
            +     +G      Q+  L++   +      R+         +LRR    L++ +  R +
Sbjct  251  IRNTCVYGGVPKGGQIRDLAKGVEVCIATPGRLIDMIESGKTNLRR-VTYLVLDEADRML  309

Query  301  D---------ALAALQDFYHREHVTKTQILC----AERRLLALFDDRKNELAHLATHG--  345
            D          L  ++        + T        A   L          L   A H   
Sbjct  310  DMGFEPQIRKILGQIRPDRQTCMWSATWPKEVRALASDYLNDFIQVNIGSLELSANHRIT  369

Query  346  ------PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIR  399
                   E  K + + K L++     ++ + +IFT T++ A  +  +L+Q          
Sbjct  370  QIVEVVSEFEKRDKMTKHLEKIMEDKDN-KILIFTGTKRVADDITRFLRQD---------  419

Query  400  AQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL  459
                 G    S      Q ++  V+ +F+ G   ++VAT VA  G+D+ +   V  Y   
Sbjct  420  -----GWPALSIHGDKQQNERDWVLNEFKTGKSPIMVATDVASRGIDVRNITHVFNYDYP  474

Query  460  TNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALE  500
             N    +   GR  RA Q   A  + T  +++  R+L+N   E
Sbjct  475  NNSEDYIHRIGRTGRAGQKGTAITLFTTDNQKQARDLVNVLTE  517


 Score = 52.1 bits (123),  Expect = 1e-05, Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 50/129 (39%), Gaps = 11/129 (9%)

Query  14   ALEGKNIIIWLPTGAGKTRA----AAYVA--KRHLETVDGAKVVVLVNRVHLVTQHGEEF  67
            AL G++++    TG+GKT      A      +  L   DG  V+VL     L  Q  +E 
Sbjct  183  ALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQQEI  242

Query  68   RRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS  126
             +     R   T + G +        LA+  ++ I T   L   + S +      L   +
Sbjct  243  TKFGKSSRIRNTCVYGGVPKGGQIRDLAKGVEVCIATPGRLIDMIESGKTN----LRRVT  298

Query  127  LIVVDECHH  135
             +V+DE   
Sbjct  299  YLVLDEADR  307


>sp|Q2H720|DBP2_CHAGB ATP-dependent RNA helicase DBP2 OS=Chaetomium 
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 
6347 / NRRL 1970) OX=306901 GN=DBP2 PE=3 SV=1
Length=562

 Score = 131 bits (329),  Expect = 7e-31, Method: Composition-based stats.
 Identities = 41/208 (20%), Positives = 80/208 (38%), Gaps = 19/208 (9%)

Query  297  VRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEK  356
             R     +A      R   +       +  + ++     + +  +     E+ K + + K
Sbjct  314  DRQTCMWSATWPKEVRALASDFLTDFIQVNIGSMDLAANHRITQVVEVVNESEKRDKMIK  373

Query  357  ILQRQFSSSNSP-RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHM  415
             L++      S  + +IFT T++ A  +  +L+Q               G    S     
Sbjct  374  HLEKIMEDKESQNKILIFTGTKRVADEITRFLRQD--------------GWPALSIHGDK  419

Query  416  TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR---GRA  472
             Q ++  V+ +F+ G   ++VAT VA  G+D+ +   V+ Y    N    +      GRA
Sbjct  420  QQNERDWVLDQFKTGKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRA  479

Query  473  RADQSVYAFVATEGSRELKRELINEALE  500
             A  +   F  T+ S++  R+L+    E
Sbjct  480  GAKGTAITFFTTDNSKQ-ARDLVGVLQE  506


 Score = 53.3 bits (126),  Expect = 6e-06, Method: Composition-based stats.
 Identities = 32/129 (25%), Positives = 49/129 (38%), Gaps = 11/129 (9%)

Query  14   ALEGKNIIIWLPTGAGKTRA----AAYVA--KRHLETVDGAKVVVLVNRVHLVTQHGEEF  67
            AL G++++    TG+GKT      A      +  L   DG  V+VL     L  Q  +E 
Sbjct  170  ALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQQEI  229

Query  68   RRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS  126
             +     R   T + G +        L+R  ++ I T   L   L    E     L   +
Sbjct  230  TKFGKSSRIRNTCVYGGVPKGPQTRDLSRGVEVCIATPGRLIDML----ESGRTNLRRVT  285

Query  127  LIVVDECHH  135
             +V+DE   
Sbjct  286  YLVLDEADR  294


>sp|Q6FLF3|DBP2_CANGA ATP-dependent RNA helicase DBP2 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DBP2 PE=3 SV=1
Length=544

 Score = 131 bits (328),  Expect = 7e-31, Method: Composition-based stats.
 Identities = 61/319 (19%), Positives = 113/319 (35%), Gaps = 48/319 (15%)

Query  228  PFGDLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEAAALAGLQEQRVY-----  280
            P  +L  ++  +     +   +     +G     QQ+ +L   A +      R+      
Sbjct  191  PTRELAVQIQKECSKFGKSSRIRNTCVYGGVPRGQQIRELIRGAEIVIATPGRLIDMLEA  250

Query  281  -ALHLRRYNDALLIHDTVRAVD---------ALAALQDFYHREHVTKTQILCAER----R  326
               +L+R    L++ +  R +D          +  ++        + T     ++     
Sbjct  251  GKTNLKR-VTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVQQLARDY  309

Query  327  LLALFDDRKNELAHLATHG--------PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQ  378
            L      +   L   A+H          E  K + L K L    S     + +IF  T++
Sbjct  310  LNDPIQVQIGSLELAASHNITQLVEVVSEFEKRDRLVKHLDTA-SQDKESKILIFASTKR  368

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT  438
            +   +  +L+Q               G    +      QR++  V+ +F+ G   ++VAT
Sbjct  369  TCDEITSYLRQD--------------GWPALAIHGDKDQRERDWVLNEFRTGNSPIMVAT  414

Query  439  SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELIN  496
             VA  G+D+   N VV Y +  N    V   GR  RA  +  A    TE ++ L   LI+
Sbjct  415  DVAARGIDVKGINFVVNYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEDNKSLGASLIS  474

Query  497  EALETLMEQAVAAVQKMDQ  515
               E   +     + K D+
Sbjct  475  IMREA-KQNIPEELMKYDR  492


 Score = 52.5 bits (124),  Expect = 1e-05, Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 50/129 (39%), Gaps = 11/129 (9%)

Query  14   ALEGKNIIIWLPTGAGKTR------AAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEF  67
            AL G++++    TG+GKT            A+  L   DG  V+VL     L  Q  +E 
Sbjct  144  ALSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQKEC  203

Query  68   RRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS  126
             +     R   T + G +        L R  +++I T   L   L + +      L   +
Sbjct  204  SKFGKSSRIRNTCVYGGVPRGQQIRELIRGAEIVIATPGRLIDMLEAGKTN----LKRVT  259

Query  127  LIVVDECHH  135
             +V+DE   
Sbjct  260  YLVLDEADR  268


>sp|Q6CCZ1|PRP5_YARLI Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) 
OX=284591 GN=PRP5 PE=3 SV=1
Length=974

 Score = 132 bits (333),  Expect = 9e-31, Method: Composition-based stats.
 Identities = 77/405 (19%), Positives = 144/405 (36%), Gaps = 56/405 (14%)

Query  139  DTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIM  198
              + + +  +     L  A   P  LG+  +P      ++   +   L     L   C  
Sbjct  438  RHIKHRVGVETHTTTLSGASSHP--LGVIITPTRELCVQIYRDLRPFLA-ALELTAVCAY  494

Query  199  S---PQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGT  255
                 ++    L++ +            R  D       +++        + + + +   
Sbjct  495  GGSPIKDQIAALKKGTHI----IVCTPGRMIDLLAANQGRVLSLSRVTFLVIDEADRMFD  550

Query  256  QMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHV  315
              +E QV+KL+++      Q     A   ++         + R+ D+L  ++       V
Sbjct  551  MGFEPQVLKLTQSIRPDR-QTVLFSATFPKKMEQLARRVLSKRSSDSLGPIEIIVGARSV  609

Query  316  TKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNS--------  367
              ++I     + + +F + K++   L         LE+L K   + F    S        
Sbjct  610  VASEIT----QFVEVFQNEKSKFPRL---------LEVLGKYFAQGFFDEQSEGRVGTGE  656

Query  368  --------PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRD  419
                    P+ +IF   ++SA SLL  L Q               G    S      Q D
Sbjct  657  SAATPIPNPKCLIFVERQESADSLLKELIQS--------------GYPCLSIHGGKEQAD  702

Query  420  QQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSV  478
            + + I  F+ G +++L+ATSVA  GLD+    +VV +    +    V   GR  RA Q  
Sbjct  703  RDQAISDFKSGLVSVLIATSVAARGLDVKGLGLVVNWDSPNHMEDYVHRVGRTGRAGQKG  762

Query  479  YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIR  523
             A       +E     I+ A+++      A VQ M +  ++ K+R
Sbjct  763  TALTFLLSDQERLAAEISRAIKSSGNAPPAPVQLMTE-RFEFKVR  806


 Score = 62.5 bits (150),  Expect = 1e-08, Method: Composition-based stats.
 Identities = 43/251 (17%), Positives = 83/251 (33%), Gaps = 41/251 (16%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKV--------------VV  52
            Q + I   + G+++I    TG+GKT A      RH++   G +               V+
Sbjct  405  QAQAIPAVMSGRDVISVAKTGSGKTLAFLLPMLRHIKHRVGVETHTTTLSGASSHPLGVI  464

Query  53   LVNRVHLVTQHGEEFRRMLDGRWTVTTLS--GDMGPRAGFGHLARCHDLLICTAELLQMA  110
            +     L  Q   + R  L     +T +   G    +     L +   +++CT   +   
Sbjct  465  ITPTRELCVQIYRDLRPFL-AALELTAVCAYGGSPIKDQIAALKKGTHIIVCTPGRMIDL  523

Query  111  LTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASP  170
            L + +    + L+  + +V+DE                     +      PQVL LT S 
Sbjct  524  LAANQGR-VLSLSRVTFLVIDEADR------------------MFDMGFEPQVLKLTQSI  564

Query  171  GTGGASKLDGA-----INHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRS  225
                 + L  A     +  + +   +  +   + P       +        Q+    +  
Sbjct  565  RPDRQTVLFSATFPKKMEQLARRVLSKRSSDSLGPIEIIVGARSVVASEITQFVEVFQNE  624

Query  226  QDPFGDLLKKL  236
            +  F  LL+ L
Sbjct  625  KSKFPRLLEVL  635


>sp|A6RGE3|DBP2_AJECN ATP-dependent RNA helicase DBP2 OS=Ajellomyces 
capsulatus (strain NAm1 / WU24) OX=2059318 GN=DBP2 PE=3 
SV=1
Length=542

 Score = 130 bits (327),  Expect = 9e-31, Method: Composition-based stats.
 Identities = 41/207 (20%), Positives = 77/207 (37%), Gaps = 16/207 (8%)

Query  297  VRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEK  356
             R     +A      R+          +  + ++     + +  +     E  K + + K
Sbjct  303  DRQTCMWSATWPKDVRQLAQDFLHDYIQVNIGSMDLSANHRITQIVEIVSEFEKRDRMAK  362

Query  357  ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT  416
             L R   ++   + +IFT T++ A  +  +L+Q               G    S      
Sbjct  363  HLDRIMEANKHSKVLIFTGTKRVADDITRFLRQD--------------GWPALSIHGDKQ  408

Query  417  QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARAD  475
            Q ++  V+ +F+ G   ++VAT VA  G+D+     V+ Y    N    V   GR  RA 
Sbjct  409  QNERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAG  468

Query  476  QSVYAF-VATEGSRELKRELINEALET  501
                A  + T  + +  R+L+    E+
Sbjct  469  AKGTAITLFTTDNAKQARDLVAILSES  495


 Score = 52.1 bits (123),  Expect = 1e-05, Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 48/129 (37%), Gaps = 11/129 (9%)

Query  14   ALEGKNIIIWLPTGAGKTRA----AAYVA--KRHLETVDGAKVVVLVNRVHLVTQHGEEF  67
            AL G++++    TG+GKT      A      +  L   DG  V+VL     L  Q   E 
Sbjct  159  ALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQTEI  218

Query  68   RRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS  126
             +     R   T + G +        L R  ++ I T   L   L + +      L   +
Sbjct  219  TKFGKSSRIRNTCVYGGVPKGPQIRDLTRGVEVCIATPGRLIDMLEAGKTN----LRRVT  274

Query  127  LIVVDECHH  135
             +V+DE   
Sbjct  275  YLVLDEADR  283


>sp|Q5B5E7|RRP3_EMENI ATP-dependent rRNA helicase rrp3 OS=Emericella 
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / 
NRRL 194 / M139) OX=227321 GN=rrp3 PE=3 SV=1
Length=465

 Score = 129 bits (324),  Expect = 1e-30, Method: Composition-based stats.
 Identities = 74/406 (18%), Positives = 132/406 (33%), Gaps = 52/406 (13%)

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
            +P    A  L      V+ L     T    +     P LQ   + P   + L       P
Sbjct  70   TPIQSQAIPLALEGRDVIGLAE---TGSGKTAAFALPMLQALMEAPQTLFGLVLA----P  122

Query  229  FGDLLKKLMDQIHDHLEMPELSRKF--GTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR  286
              +L  ++            +      G      Q + L +   +      R+   HL  
Sbjct  123  TRELAYQISQAFETLGSTIGVRCAVIVGGMDMVAQSIALGKKPHIIVATPGRLLD-HLEN  181

Query  287  YNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNELAHLA  342
                 L +    A+D    L D    E + K   +    R   LF      +   L   +
Sbjct  182  TKGFSLRNLKYLAIDEADRLLDMDFGESLDKIIRILPRTRHTYLFSATMSTKVESLQRAS  241

Query  343  THGPE----NPKLEMLEKILQRQFSSSNSPR---------------GIIFTRTRQSAHSL  383
               P     + K + +  +        +  +                IIFT T      +
Sbjct  242  LSNPVRVSVSSKYQTVSTLQSSYICIPHKHKNLYLVYLLNEFAGQSAIIFTTTVHETQRV  301

Query  384  LLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEE  443
               L+               +G G       ++Q  +   + KF+  + ++LVAT VA  
Sbjct  302  AFMLRA--------------LGFGAIPLHGQLSQSARLGALGKFRSRSRDILVATDVAAR  347

Query  444  GLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALET  501
            GLDIP  +VV  + L  +  + +   GR ARA +S  A    T+   E+   + +   + 
Sbjct  348  GLDIPSVDVVFNFDLPMDSKTYIHRVGRTARAGKSGVAISFVTQYDVEVWLRIEHALSKK  407

Query  502  LMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQF  547
            L E  V   + M  +E  A   +  + A  +  +   ++  + ++F
Sbjct  408  LPEYQVEKDEVMVMSERVA---EASRQATIEMKSFDEKKGARGKKF  450


 Score = 59.4 bits (142),  Expect = 6e-08, Method: Composition-based stats.
 Identities = 30/131 (23%), Positives = 48/131 (37%), Gaps = 5/131 (4%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKV-VVLVNRVHLVTQHGE  65
            Q + I  ALEG+++I    TG+GKT A A    + L         +VL     L  Q  +
Sbjct  73   QSQAIPLALEGRDVIGLAETGSGKTAAFALPMLQALMEAPQTLFGLVLAPTRELAYQISQ  132

Query  66   EFRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
             F  +          + G M   A    L +   +++ T   L   L + +      L  
Sbjct  133  AFETLGSTIGVRCAVIVGGMDMVAQSIALGKKPHIIVATPGRLLDHLENTKG---FSLRN  189

Query  125  FSLIVVDECHH  135
               + +DE   
Sbjct  190  LKYLAIDEADR  200


>sp|Q0ILZ4|RH9_ORYSJ DEAD-box ATP-dependent RNA helicase 9 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os12g0611200 PE=2 SV=1
Length=628

 Score = 131 bits (329),  Expect = 1e-30, Method: Composition-based stats.
 Identities = 56/301 (19%), Positives = 104/301 (35%), Gaps = 52/301 (17%)

Query  230  GDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND  289
               L K +++        E    +G     QQ+ +L+    +      RV  L  R    
Sbjct  181  TRELAKQVEREFSDSSNVETICVYGGTPISQQIRQLNYGVDVVIGTPGRVIDLLKR---G  237

Query  290  ALLIHDTVRAV-DALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATH  344
            AL + +    V D    +      E V         +R   +F          L      
Sbjct  238  ALNLSEVRFVVLDEADQMLSVGFDEDVETILDRVPPKRQTLMFSATMPTWIQRLTQKYLK  297

Query  345  GPE-------------------------NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQS  379
             P                          + K  +L ++++     +   + I+FT+T++ 
Sbjct  298  NPVTIDLVGEDDQKLAEGISLYSIASEGHAKPAVLGELIKEH---AKGGKCIVFTQTKRD  354

Query  380  AHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATS  439
            A  L   + +         + Q L G         +TQ  ++  ++ F++G  N+L+AT 
Sbjct  355  ADRLSYTMGR-------SFQCQALHG--------DITQAQRERTLKGFREGHFNILIATD  399

Query  440  VAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEA  498
            VA  GLDIP+ ++V+ + L  +    V   GR  RA +   A V     +     ++   
Sbjct  400  VAARGLDIPNVDLVIHFELPNSSELFVHRSGRTGRAGKKGKAIVMHSYQQSRAIRMVEND  459

Query  499  L  499
            +
Sbjct  460  V  460


 Score = 54.4 bits (129),  Expect = 2e-06, Method: Composition-based stats.
 Identities = 28/134 (21%), Positives = 49/134 (37%), Gaps = 13/134 (10%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTR---AAAY--VAKRHLETVDGA--KVVVLVNRVHL  59
            Q  V+ PA++GK+++    TG GKT          + + + +   G     +VL     L
Sbjct  125  QRAVLEPAMQGKDMVGRAKTGTGKTLAFGIPILDAIIRHNEKNSPGKFPLAIVLAPTREL  184

Query  60   VTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
              Q   EF    +       + G          L    D++I T   +   L    +   
Sbjct  185  AKQVEREFSDSSN--VETICVYGGTPISQQIRQLNYGVDVVIGTPGRVIDLL----KRGA  238

Query  120  VELTVFSLIVVDEC  133
            + L+    +V+DE 
Sbjct  239  LNLSEVRFVVLDEA  252


>sp|Q755N4|DBP2_EREGS ATP-dependent RNA helicase DBP2 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=DBP2 PE=3 SV=2
Length=557

 Score = 130 bits (327),  Expect = 1e-30, Method: Composition-based stats.
 Identities = 60/311 (19%), Positives = 107/311 (34%), Gaps = 53/311 (17%)

Query  228  PFGDLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEAAALAGLQEQRVY-----  280
            P  +L  ++  +         +     +G     QQ+  L     +      R+      
Sbjct  195  PTRELAVQIQKECSKFGRSSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEI  254

Query  281  -ALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELA  339
               +L+R    L++ +  R +D     Q    R+ V + +         A +     +LA
Sbjct  255  GKTNLKR-VTYLVLDEADRMLDMGFEPQ---IRKIVDQIRPDRQTLMWSATWPKEVQQLA  310

Query  340  HLATHGP------------------------ENPKLEMLEKILQRQFSSSNSPRGIIFTR  375
                H P                        +  K + L K L    S     + IIF  
Sbjct  311  RDYLHDPIQVNIGSLELAASHTITQLVEVVSDFDKRDRLVKHL-EIASKDKDSKIIIFAS  369

Query  376  TRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLL  435
            T+++   +  +L+Q               G    +      Q+++  V+ +F+ G   ++
Sbjct  370  TKRTCDEITSYLRQD--------------GWPALAIHGDKQQQERDWVLNEFRTGRSPIM  415

Query  436  VATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRE  493
            VAT VA  G+D+   N V+ Y +  N    V   GR  RA  +  A    TE ++ L  +
Sbjct  416  VATDVAARGIDVKGINFVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEANKTLGAQ  475

Query  494  LINEALETLME  504
            LI+   E   E
Sbjct  476  LISIMREAKQE  486


 Score = 54.4 bits (129),  Expect = 2e-06, Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 49/129 (38%), Gaps = 11/129 (9%)

Query  14   ALEGKNIIIWLPTGAGKTR------AAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEF  67
            AL G+++I    TG+GKT            A+  L   DG  V+VL     L  Q  +E 
Sbjct  148  ALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPVVLVLAPTRELAVQIQKEC  207

Query  68   RRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS  126
             +     R   T + G +        L R  ++LI T   L   L    E     L   +
Sbjct  208  SKFGRSSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDML----EIGKTNLKRVT  263

Query  127  LIVVDECHH  135
             +V+DE   
Sbjct  264  YLVLDEADR  272


>sp|Q7SBC6|DBP2_NEUCR ATP-dependent RNA helicase dbp2 OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / 
DSM 1257 / FGSC 987) OX=367110 GN=drh-1 PE=3 SV=2
Length=562

 Score = 130 bits (327),  Expect = 1e-30, Method: Composition-based stats.
 Identities = 60/342 (18%), Positives = 117/342 (34%), Gaps = 50/342 (15%)

Query  193  DTWCIMSPQNCCPQLQEHSQQPCKQY-NLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSR  251
            +T    +   C P +   + QP     +        P  +L  ++  +I    +   +  
Sbjct  177  ETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLILAPTRELAVQIQQEISKFGKSSRIRN  236

Query  252  K--FGTQMYEQQVVKLSEAAALAGLQEQRVY------ALHLRRYNDALLIHDTVRAVDA-  302
               +G      Q+  LS    +      R+         +LRR    L++ +  R +D  
Sbjct  237  TCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLESGKTNLRR-VTYLVLDEADRMLDMG  295

Query  303  --------------------LAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLA  342
                                 +A      R           +  + ++     + +  + 
Sbjct  296  FEPQIRKIIGQIRPDRQTLMWSATWPKEVRNLAADFLTDFIQVNIGSMDLAANHRITQIV  355

Query  343  THGPENPKLEMLEKILQRQFSS-SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQ  401
                E+ K + + K L++      N  + +IFT T++ A  +  +L+Q            
Sbjct  356  EVVSESEKRDRMIKHLEKIMEGRENQNKILIFTGTKRVADDITRFLRQD-----------  404

Query  402  LLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN  461
               G    S      Q ++  V+ +F+ G   ++VAT VA  G+D+ +   V+ Y    N
Sbjct  405  ---GWPALSIHGDKQQNERDWVLDQFKTGKSPIMVATDVASRGIDVRNITHVLNYDYPNN  461

Query  462  EISMVQAR---GRARADQSVYAFVATEGSRELKRELINEALE  500
                +      GRA A  +   F  T+ S++  REL+    E
Sbjct  462  SEDYIHRIGRTGRAGAKGTAITFFTTDNSKQ-ARELVGVLQE  502


 Score = 53.6 bits (127),  Expect = 4e-06, Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 50/129 (39%), Gaps = 11/129 (9%)

Query  14   ALEGKNIIIWLPTGAGKTRA----AAYVA--KRHLETVDGAKVVVLVNRVHLVTQHGEEF  67
            AL G++++    TG+GKT      A      +  L   DG  V++L     L  Q  +E 
Sbjct  166  ALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLILAPTRELAVQIQQEI  225

Query  68   RRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS  126
             +     R   T + G +        L+R  ++ I T   L   L S +      L   +
Sbjct  226  SKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLESGKTN----LRRVT  281

Query  127  LIVVDECHH  135
             +V+DE   
Sbjct  282  YLVLDEADR  290


>sp|A3LP87|DBP8_PICST ATP-dependent RNA helicase DBP8 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=DBP8 PE=3 SV=2
Length=445

 Score = 128 bits (322),  Expect = 1e-30, Method: Composition-based stats.
 Identities = 58/394 (15%), Positives = 135/394 (34%), Gaps = 45/394 (11%)

Query  163  VLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCH  222
            + GL  +P    A ++      +     N+    ++  ++   Q  E  ++P        
Sbjct  70   IFGLVLTPTRELALQIAEQFAALGA-SMNIKISVVVGGEDFVKQTLELQKKPHFVIATPG  128

Query  223  RRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYAL  282
            R +        + +         + + + +  +  +   + +       +  ++  ++  
Sbjct  129  RLADHILNSGEETISGLRRIKYLVLDEADRLLSNSFGGDLERCFSVLPPSEKRQTCLFTA  188

Query  283  HLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLA  342
             +     AL      +    +     F H         + +   +  +F           
Sbjct  189  TVTDAVRALKEKPPAQGKPPV-----FLHEVETVDQVAIPSTLSIKYVFV----------  233

Query  343  THGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL  402
               P   K   L  IL+           +IF     +A  L   L++ +           
Sbjct  234  ---PSYVKEAYLNSILR--LPQYEKSTAVIFVNRTTTAEVLRRTLRKLE-----------  277

Query  403  LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE  462
                  +S  + M Q ++   +Q+F+ G   +L+AT VA  GLDIP   +VV + +  + 
Sbjct  278  ---FRVASLHSEMPQSERTNSVQRFKAGAARILIATDVASRGLDIPSVELVVNFDIPADP  334

Query  463  ISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK  521
               +   GR ARA +S  A       +++ R      + ++ E+    ++ +++    + 
Sbjct  335  DDFIHRVGRTARAGRSGDAVTII-AEKDIDR------IASIEERINKKMELLEEVTDDSV  387

Query  522  IRD-LQQAALTKRAA-QAAQRENQRQQFPVEHVQ  553
            I D L   ++ KR +     +EN  ++  +   +
Sbjct  388  ITDSLTATSVAKRESLMEMDKENFGEKRKINRKK  421


 Score = 50.6 bits (119),  Expect = 4e-05, Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 46/129 (36%), Gaps = 6/129 (5%)

Query  15   LEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQ---HGEEFRRM  70
            L G + I    TG+GKT A AA +  +  E   G   +VL     L  Q           
Sbjct  36   LSGHDCIGGAKTGSGKTIAFAAPMLTQWSEDPFGIFGLVLTPTRELALQIAEQFAALGAS  95

Query  71   LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV  130
            ++ + +V     D   +     L +    +I T   L   + +  EE    L     +V+
Sbjct  96   MNIKISVVVGGEDFVKQTL--ELQKKPHFVIATPGRLADHILNSGEETISGLRRIKYLVL  153

Query  131  DECHHTHKD  139
            DE      +
Sbjct  154  DEADRLLSN  162


>sp|Q6C4D4|DBP2_YARLI ATP-dependent RNA helicase DBP2 OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DBP2 PE=3 
SV=1
Length=552

 Score = 130 bits (326),  Expect = 1e-30, Method: Composition-based stats.
 Identities = 59/304 (19%), Positives = 109/304 (36%), Gaps = 47/304 (15%)

Query  228  PFGDLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEAAALAGLQEQRVY-----  280
            P  +L  ++  +     +  ++     +G     QQ+  L+    +      R+      
Sbjct  197  PTRELAVQIQQECSKFGKSSKIRNTCVYGGVPRGQQIRDLARGVEIVIATPGRLLDMLES  256

Query  281  -ALHLRRYNDALLIHDTVRAVD---------ALAALQDFYHREHVTKTQILCAER----R  326
               +LRR    L++ +  R +D          +  ++        + T     +R     
Sbjct  257  GKTNLRR-VTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVQRLAHDY  315

Query  327  LLALFDDRKNELAHLATHG--------PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQ  378
            L          L   A+H          E  K + L K L      +   + +IFT T++
Sbjct  316  LKDQIQVNIGSLELSASHNITQVVEVCTEYEKRDRLVKHL-ETVMENKESKCLIFTGTKR  374

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT  438
             A  +  +L+Q               G    +      Q+++  V+ +F+ G   ++VAT
Sbjct  375  VADDITKFLRQD--------------GWPALAIHGDKQQQERDWVLNEFRQGKSPIMVAT  420

Query  439  SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFV-ATEGSRELKRELIN  496
             VA  G+D+   N V+ Y   +N    V   GR  RA     A+   TE +R+  R+L+ 
Sbjct  421  DVASRGIDVKGINFVINYDYPSNSEDYVHRIGRTGRAGTKGTAYTYFTEDNRKQARDLLV  480

Query  497  EALE  500
               E
Sbjct  481  ILRE  484


 Score = 55.2 bits (131),  Expect = 1e-06, Method: Composition-based stats.
 Identities = 33/129 (26%), Positives = 52/129 (40%), Gaps = 11/129 (9%)

Query  14   ALEGKNIIIWLPTGAGKTRA----AAYVA--KRHLETVDGAKVVVLVNRVHLVTQHGEEF  67
            AL G+++I    TG+GKT +    A      +  L   DG  V+VL     L  Q  +E 
Sbjct  150  ALTGRDVIGIASTGSGKTLSYCLPAIVHINAQPMLSHGDGPIVLVLAPTRELAVQIQQEC  209

Query  68   RRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS  126
             +     +   T + G +        LAR  +++I T   L   L S +      L   +
Sbjct  210  SKFGKSSKIRNTCVYGGVPRGQQIRDLARGVEIVIATPGRLLDMLESGKTN----LRRVT  265

Query  127  LIVVDECHH  135
             +V+DE   
Sbjct  266  YLVLDEADR  274


>sp|Q4X195|DBP2_ASPFU ATP-dependent RNA helicase dbp2 OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 
/ Af293) OX=330879 GN=dbp2 PE=3 SV=2
Length=547

 Score = 130 bits (326),  Expect = 2e-30, Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 81/207 (39%), Gaps = 19/207 (9%)

Query  297  VRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEK  356
             R     +A      R+  T       +  + ++     + +  +     +  K + + K
Sbjct  299  DRQTCMWSATWPKEVRQLATDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIK  358

Query  357  ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT  416
             L++    + S + +IFT T++ A  +  +L+Q               G    S      
Sbjct  359  HLEKIME-NRSNKCLIFTGTKRIADEITRFLRQD--------------GWPALSIHGDKQ  403

Query  417  QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR---GRAR  473
            Q+++  V+ +F+ G   ++VAT VA  G+D+     V+ Y    N    +      GRA 
Sbjct  404  QQERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYIHRIGRTGRAG  463

Query  474  ADQSVYAFVATEGSRELKRELINEALE  500
            A  +   F  TE S++  R+L+    E
Sbjct  464  AKGTAITFFTTENSKQ-ARDLVTILTE  489


 Score = 53.6 bits (127),  Expect = 4e-06, Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 48/129 (37%), Gaps = 11/129 (9%)

Query  14   ALEGKNIIIWLPTGAGKTRA----AAYVA--KRHLETVDGAKVVVLVNRVHLVTQHGEEF  67
            AL G++++    TG+GKT      A      +  L   DG  V++L     L  Q   E 
Sbjct  155  ALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLILAPTRELAVQIQAEI  214

Query  68   RRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS  126
             +     R   T + G +        L+R  ++ I T   L   L    E     L   +
Sbjct  215  SKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDML----EAGRTNLRRVT  270

Query  127  LIVVDECHH  135
             +V+DE   
Sbjct  271  YLVLDEADR  279


>sp|Q5VQL1|RH14_ORYSJ DEAD-box ATP-dependent RNA helicase 14 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os01g0172200 PE=2 
SV=1
Length=708

 Score = 131 bits (329),  Expect = 2e-30, Method: Composition-based stats.
 Identities = 62/300 (21%), Positives = 102/300 (34%), Gaps = 62/300 (21%)

Query  227  DPFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAAALAGLQEQRVY-ALH  283
             P  +L  ++ D+         +S    +G      Q+  L   A +      R+   L 
Sbjct  259  SPTRELATQIQDEAKKFGRSSRISSVCLYGGAPKGPQLRDLERGADIVVATPGRLNDILE  318

Query  284  LRRY----NDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELA  339
            +RR        L++ +  R +D     +    +      + +  +R+ L        E+ 
Sbjct  319  MRRVSLHQVSYLVLDEADRMLDM--GFEPQIRKI----VKQVQPKRQTLMFTATWPKEVR  372

Query  340  HLATHGPENP----------------------------KLEMLEKILQRQFSSSNSPRGI  371
             +A+    NP                            K   L++IL+ Q       + I
Sbjct  373  KIASDLLSNPVQVNIGNTDQLVANKSITQYVDVITPPEKSRRLDQILRSQ---EPGSKII  429

Query  372  IFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGT  431
            IF  T++    L   L +Q                G S+     +Q ++  V+ +F+ G 
Sbjct  430  IFCSTKRMCDQLARNLARQ---------------YGASAIHGDKSQAERDSVLSEFRSGR  474

Query  432  LNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR---GRARADQSVYAFVATEGSR  488
              +LVAT VA  GLDI    VVV Y   T     V      GRA A    Y F   + S+
Sbjct  475  CPILVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFCDQDSK  534


 Score = 59.8 bits (143),  Expect = 6e-08, Method: Composition-based stats.
 Identities = 63/314 (20%), Positives = 101/314 (32%), Gaps = 31/314 (10%)

Query  14   ALEGKNIIIWLPTGAGKT-------RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ-HGE  65
            AL  ++I+    TG+GKT              + +    DG  V+VL     L TQ   E
Sbjct  214  ALRNRDIVAVAKTGSGKTLGYLIPGFILLKRLQHNSR--DGPTVLVLSPTRELATQIQDE  271

Query  66   EFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF  125
              +     R +   L G          L R  D+++ T   L   L    E   V L   
Sbjct  272  AKKFGRSSRISSVCLYGGAPKGPQLRDLERGADIVVATPGRLNDIL----EMRRVSLHQV  327

Query  126  SLIVVDECHH---THKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS-PGTGGASKLDGA  181
            S +V+DE         +     I+ Q         QP  Q L  TA+ P        D  
Sbjct  328  SYLVLDEADRMLDMGFEPQIRKIVKQV--------QPKRQTLMFTATWPKEVRKIASDLL  379

Query  182  INHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIH  241
             N V     N D             +     +  ++ +   R  +     ++     ++ 
Sbjct  380  SNPVQVNIGNTDQLVANKSITQYVDVITP-PEKSRRLDQILRSQEPGSKIIIFCSTKRMC  438

Query  242  DHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV-  300
            D L    L+R++G         +    + L+  +  R   L         L    +R V 
Sbjct  439  DQL-ARNLARQYGASAIHGDKSQAERDSVLSEFRSGRCPILVATDVAARGLDIKDIRVVV  497

Query  301  --DALAALQDFYHR  312
              D    ++D+ HR
Sbjct  498  NYDFPTGVEDYVHR  511


>sp|P38719|DBP8_YEAST ATP-dependent RNA helicase DBP8 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DBP8 
PE=1 SV=1
Length=431

 Score = 128 bits (321),  Expect = 2e-30, Method: Composition-based stats.
 Identities = 47/215 (22%), Positives = 90/215 (42%), Gaps = 26/215 (12%)

Query  346  PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
            PE+ K   L ++L  +   + +   IIF     +A  L   L+Q +              
Sbjct  235  PEHVKEAYLYQLLTCEEYENKT--AIIFVNRTMTAEILRRTLKQLE--------------  278

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM  465
               +S  + M Q+++   + +F+     +L+AT VA  GLDIP   +VV Y + ++    
Sbjct  279  VRVASLHSQMPQQERTNSLHRFRANAARILIATDVASRGLDIPTVELVVNYDIPSDPDVF  338

Query  466  VQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM-DQAEYQAKIR  523
            +   GR ARA +   A       R++ R    +A+E  + + +    K+ D A  +  + 
Sbjct  339  IHRSGRTARAGRIGDAISFVTQ-RDVSRI---QAIEDRINKKMTETNKVHDTAVIRKALT  394

Query  524  DLQQAALTKRAAQA----AQRENQRQQFPVEHVQL  554
             + +A      A       +R+ Q+++   +   L
Sbjct  395  KVTKAKRESLMAMQKENFGERKRQQKKKQNDGKSL  429


 Score = 46.3 bits (108),  Expect = 7e-04, Method: Composition-based stats.
 Identities = 31/137 (23%), Positives = 50/137 (36%), Gaps = 13/137 (9%)

Query  7    QWEVIMPA-----LEGKNIIIWLPTGAGKTRAAAY--VAKRHLETVDGAKVVVLVNRVHL  59
            Q   I  A     LEG++ I    TG+GKT  A    +  +  E   G   VVL     L
Sbjct  24   QPTAIQKACIPKILEGRDCIGGAKTGSGKT-IAFAGPMLTKWSEDPSGMFGVVLTPTREL  82

Query  60   VTQ---HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE  116
              Q           ++ R +V  + G+   +       + H ++  T   L   + S  +
Sbjct  83   AMQIAEQFTALGSSMNIRVSVI-VGGESIVQQALDLQRKPHFII-ATPGRLAHHIMSSGD  140

Query  117  EEHVELTVFSLIVVDEC  133
            +    L     +V+DE 
Sbjct  141  DTVGGLMRAKYLVLDEA  157


>sp|A6ZT77|DBP8_YEAS7 ATP-dependent RNA helicase DBP8 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=DBP8 PE=3 SV=1
Length=431

 Score = 128 bits (321),  Expect = 2e-30, Method: Composition-based stats.
 Identities = 47/215 (22%), Positives = 90/215 (42%), Gaps = 26/215 (12%)

Query  346  PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
            PE+ K   L ++L  +   + +   IIF     +A  L   L+Q +              
Sbjct  235  PEHVKEAYLYQLLTCEEYENKT--AIIFVNRTMTAEILRRTLKQLE--------------  278

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM  465
               +S  + M Q+++   + +F+     +L+AT VA  GLDIP   +VV Y + ++    
Sbjct  279  VRVASLHSQMPQQERTNSLHRFRANAARILIATDVASRGLDIPTVELVVNYDIPSDPDVF  338

Query  466  VQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM-DQAEYQAKIR  523
            +   GR ARA +   A       R++ R    +A+E  + + +    K+ D A  +  + 
Sbjct  339  IHRSGRTARAGRIGDAISFVTQ-RDVSRI---QAIEDRINKKMTETNKVHDTAVIRKALT  394

Query  524  DLQQAALTKRAAQA----AQRENQRQQFPVEHVQL  554
             + +A      A       +R+ Q+++   +   L
Sbjct  395  KVTKAKRESLMAMQKENFGERKRQQKKKQNDGKSL  429


 Score = 46.3 bits (108),  Expect = 7e-04, Method: Composition-based stats.
 Identities = 31/137 (23%), Positives = 50/137 (36%), Gaps = 13/137 (9%)

Query  7    QWEVIMPA-----LEGKNIIIWLPTGAGKTRAAAY--VAKRHLETVDGAKVVVLVNRVHL  59
            Q   I  A     LEG++ I    TG+GKT  A    +  +  E   G   VVL     L
Sbjct  24   QPTAIQKACIPKILEGRDCIGGAKTGSGKT-IAFAGPMLTKWSEDPSGMFGVVLTPTREL  82

Query  60   VTQ---HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE  116
              Q           ++ R +V  + G+   +       + H ++  T   L   + S  +
Sbjct  83   AMQIAEQFTALGSSMNIRVSVI-VGGESIVQQALDLQRKPHFII-ATPGRLAHHIMSSGD  140

Query  117  EEHVELTVFSLIVVDEC  133
            +    L     +V+DE 
Sbjct  141  DTVGGLMRAKYLVLDEA  157


>sp|Q5W5U4|DDX4_BOVIN Probable ATP-dependent RNA helicase DDX4 
OS=Bos taurus OX=9913 GN=DDX4 PE=2 SV=1
Length=729

 Score = 131 bits (329),  Expect = 2e-30, Method: Composition-based stats.
 Identities = 58/342 (17%), Positives = 114/342 (33%), Gaps = 65/342 (19%)

Query  255  TQMYEQQVVKLSEAAALAGLQEQRVYALHL-RRYNDALLIHDTVRAVDALAALQDFYHRE  313
                 Q V   +   A  G     +    +  R    L++ +  R +D     +    ++
Sbjct  408  GHSIRQIVQGCNILCATPGRLMDVIGKEKIGLRQVKYLVLDEADRMLDMGFGPEM---KK  464

Query  314  HVTKTQILCAERRLLALFDDRKNE----------------------------LAHLATHG  345
             ++   +   E+R   +F     E                            +       
Sbjct  465  LISCPGMPSKEQRQTLMFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQTILQV  524

Query  346  PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
             +  K E L +IL+         R ++F  T++ A  +  +L Q++              
Sbjct  525  GQYSKREKLVEILRNI----GDERTMVFVETKKKADFIATFLCQEK--------------  566

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM  465
               +S      QR++++ +  F+ G   +LVATSVA  GLDI +   V+ + L +     
Sbjct  567  ISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEY  626

Query  466  VQARGR-ARADQSVYA--FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKI  522
            V   GR  R   +  A  F   E   +L + L+ + L    +   A ++++  + Y    
Sbjct  627  VHRIGRTGRCGNTGRAISFFDLESDSQLAQPLV-KVLSDAQQDVPAWLEEIAFSTYGPGF  685

Query  523  R-----------DLQQAALTKRAAQAAQRENQRQQFPVEHVQ  553
                        D ++    K +   A   + +   PV+   
Sbjct  686  SGNARGNVFASVDTRKNYPGKSSLNTAGFSSTQAPNPVDDES  727


 Score = 48.6 bits (114),  Expect = 2e-04, Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 55/164 (34%), Gaps = 16/164 (10%)

Query  17   GKNIIIWLPTGAGKTRAAAYVAKRH----------LETVDGAKVVVLVNRVHLVTQHGEE  66
            G++++    TG+GKT A       H           + +   + +++     L+ Q   E
Sbjct  327  GRDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLE  386

Query  67   FRRM-LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF  125
             R+           + G          + +  ++L  T   L   +   +    + L   
Sbjct  387  ARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDVIGKEK----IGLRQV  442

Query  126  SLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS  169
              +V+DE      D  +   M + +      ++   Q L  +A+
Sbjct  443  KYLVLDEADR-MLDMGFGPEMKKLISCPGMPSKEQRQTLMFSAT  485


>sp|Q2HAD8|PRP5_CHAGB Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 
/ DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=PRP5 
PE=3 SV=1
Length=1064

 Score = 132 bits (331),  Expect = 2e-30, Method: Composition-based stats.
 Identities = 61/335 (18%), Positives = 112/335 (33%), Gaps = 47/335 (14%)

Query  214  PCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAAAL  271
            P    +        P  +L  ++   +    +  +L     +G    + Q+ +L   A +
Sbjct  496  PVTGDDGAIALIMTPTRELCTQIYSDLLPFAKALKLRAIAAYGGNAIKDQIAELKRGAEI  555

Query  272  AGLQEQRVYAL---------HLRRYNDALLIHDTVRAVD--------------------A  302
                  R+  L         +L+R    L++ +  R  D                     
Sbjct  556  IVATPGRMIDLLAANSGRVTNLKR-ATYLVLDEADRMFDMGFEPQVMKIFNNVRPDRQTI  614

Query  303  LAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQF  362
            L +       + +TK  +       +        E+  +     E  K   L ++L   +
Sbjct  615  LFSATMPRIIDALTKKVLREPVEIQVGGRSVVAPEITQIVEILDEGKKFVRLLELLGELY  674

Query  363  SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE  422
            +  +  R +IF   ++ A  LL  + ++              G G  S      Q D+  
Sbjct  675  ADDDDVRALIFVERQEKADDLLREVLRR--------------GYGCMSIHGGKDQEDRNS  720

Query  423  VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF  481
             I  F+ G   +++ATSVA  GLD+    +VV Y    +    V   GR  RA  +  A 
Sbjct  721  TISDFKKGVCPIMIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAV  780

Query  482  VATEGSRELKRELINEALETLMEQAVAAVQKMDQA  516
                  +E     I +ALE   +     + +M +A
Sbjct  781  TFITEEQENCAPGIAKALEQSGQPVPEQLNEMRKA  815


 Score = 65.6 bits (158),  Expect = 1e-09, Method: Composition-based stats.
 Identities = 53/323 (16%), Positives = 105/323 (33%), Gaps = 29/323 (9%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLET------VDGAKVVVLVNRVHLV  60
            Q + +   + G+++I    TG+GKT A      RH++        DGA  +++     L 
Sbjct  456  QMQALPVIMSGRDVIGVAKTGSGKTMAFVLPMLRHIKDQDPVTGDDGAIALIMTPTRELC  515

Query  61   TQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
            TQ   +        +       G    +     L R  ++++ T   +   L +      
Sbjct  516  TQIYSDLLPFAKALKLRAIAAYGGNAIKDQIAELKRGAEIIVATPGRMIDLLAANSGR-V  574

Query  120  VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQ-----PLPQVL-GLTASPGTG  173
              L   + +V+DE            +M  +  ++  R        +P+++  LT      
Sbjct  575  TNLKRATYLVLDEADRMFDMGFEPQVMKIFNNVRPDRQTILFSATMPRIIDALTKKVLRE  634

Query  174  GASKLDGAIN----HVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPF  229
                  G  +     + Q+   LD             L E          L     Q+  
Sbjct  635  PVEIQVGGRSVVAPEITQIVEILDEGKKFVR--LLELLGELYADDDDVRALIFVERQEKA  692

Query  230  GDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND  289
             DLL++++ + +  + +         Q      +   +      +    V A  L     
Sbjct  693  DDLLREVLRRGYGCMSIHGGK----DQEDRNSTISDFKKGVCPIMIATSVAARGLDVKQL  748

Query  290  ALLIHDTVRAVDALAALQDFYHR  312
             L+++      DA   L+D+ HR
Sbjct  749  KLVVN-----YDAPNHLEDYVHR  766


>sp|A1CR32|RRP3_ASPCL ATP-dependent rRNA helicase rrp3 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / 
NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=rrp3 PE=3 SV=1
Length=473

 Score = 128 bits (322),  Expect = 2e-30, Method: Composition-based stats.
 Identities = 64/356 (18%), Positives = 130/356 (37%), Gaps = 48/356 (13%)

Query  214  PCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAG  273
            P ++      +S +  G  +      I   ++M   S   G + +   ++  +    L  
Sbjct  129  PTRELAFQISQSFEALGSTINVRCAVIVGGMDMVSQSIALGKKPH---IIVATPGRLLDH  185

Query  274  LQEQRVYALHLRRYNDALLIHDTVRAVD-ALAALQDFYHREHVTKTQILCAERRLLALFD  332
            L+  + ++L   +Y   L++ +  R +D     L D   +    + +         A   
Sbjct  186  LENTKGFSLRTLKY---LVMDEADRLLDMDFGPLLDKILKILPRERRTFL----FSATMS  238

Query  333  DRKNELAHLATHGPE-----NPKLEMLEKILQRQFSSSNSPR---------------GII  372
             +   L   +   P      + K + +  +LQ      +  +                II
Sbjct  239  SKVESLQRASLSNPLRVSVSSNKYQTVSTLLQSYRFIPHKHKDIYLVYLLNEFVGQSAII  298

Query  373  FTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTL  432
            FTRT      +   L+               +G G       ++Q  +   + KF+  + 
Sbjct  299  FTRTVHETQRISFLLRA--------------LGFGAIPLHGQLSQSSRLGALGKFRSRSR  344

Query  433  NLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELK  491
            ++LVAT VA  GLDIP  +VV+ + L T+  + V   GR ARA +S  A           
Sbjct  345  DILVATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQYDVEI  404

Query  492  RELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQF  547
               I  AL   +++    ++K +      ++ + Q+ A+ +      ++  + ++F
Sbjct  405  WLRIEGALGKKLDEY--DLEKDEVMVLAERVGEAQRQAIMEMKNFDEKKGTRAKKF  458


 Score = 61.4 bits (147),  Expect = 1e-08, Method: Composition-based stats.
 Identities = 65/426 (15%), Positives = 134/426 (31%), Gaps = 46/426 (11%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVV---LVNRVHLVTQH  63
            Q E I  AL+ +++I    TG+GKT A A    + L  +D  +      L     L  Q 
Sbjct  80   QAESIPLALQDRDLIGLAETGSGKTAAFALPILQAL--MDKPQSFFGLVLAPTRELAFQI  137

Query  64   GEEFRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
             + F  +          + G M   +    L +   +++ T   L   L + +      L
Sbjct  138  SQSFEALGSTINVRCAVIVGGMDMVSQSIALGKKPHIIVATPGRLLDHLENTKG---FSL  194

Query  123  TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLP---QVLGLTASPGTGGASKLD  179
                 +V+DE           ++   +  L  +  + LP   +    +A+  +   S   
Sbjct  195  RTLKYLVMDEADR--------LLDMDFGPLLDKILKILPRERRTFLFSATMSSKVESLQR  246

Query  180  GAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQ  239
             ++++ L++  + + +  +S      +   H  +      L      +  G         
Sbjct  247  ASLSNPLRVSVSSNKYQTVSTLLQSYRFIPHKHKDIYLVYL----LNEFVGQSAIIFTRT  302

Query  240  IHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRA  299
            +H+   +  L R  G         +LS+++ L  L + R  +  +    D       + +
Sbjct  303  VHETQRISFLLRALGFGA-IPLHGQLSQSSRLGALGKFRSRSRDILVATDVAARGLDIPS  361

Query  300  VDALAAL------QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEM  353
            VD +         + + HR   T       +  +   F  + +    L   G    KL+ 
Sbjct  362  VDVVLNFDLPTDSKTYVHRVGRTAR---AGKSGVAISFVTQYDVEIWLRIEGALGKKLDE  418

Query  354  LEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQST  413
                             ++       A      + + +             G G  S+  
Sbjct  419  ---------YDLEKDEVMVLAERVGEAQR--QAIMEMKNFDEKKGTRAKKFGKGKRSRD-  466

Query  414  HMTQRD  419
             M Q +
Sbjct  467  EMDQEE  472


>sp|Q0UN57|PRP5_PHANO Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 
/ FGSC 10173) OX=321614 GN=PRP5 PE=3 SV=2
Length=1184

 Score = 132 bits (331),  Expect = 2e-30, Method: Composition-based stats.
 Identities = 68/366 (19%), Positives = 130/366 (36%), Gaps = 51/366 (14%)

Query  212  QQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEAA  269
            Q+P K  +        P  +L  ++++++   L    ++ K  +G Q    Q+  + +  
Sbjct  609  QRPLKPADGPIGLILAPTRELSLQIVNELKPFLNASGITIKCAYGGQPISDQIA-MIKRG  667

Query  270  ALAGLQEQRVYALHLRRYND----------ALLIHDTVRAVD---------ALAALQDFY  310
             +  L       + L + N            +++ +  R  D          LA+++   
Sbjct  668  GIHILCATAGRLIDLLQSNSGRVLSFRRITYVVLDEADRMFDMGFEPQVMKILASIRPDR  727

Query  311  H-----------REHVTKTQILCAERRLLALFDDRKNELAHLATHGPEN--PKLEMLEKI  357
                           + +  +      ++        E+    T  P +   K+  L   
Sbjct  728  QTILFSATFPKTMAALARKALDKPAEVIIGGRSKVAPEITQHITIVPPSYEKKIAKLLHH  787

Query  358  LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ  417
            L + FS   + + +IFT  +++A  LL  L + +      I                  Q
Sbjct  788  LGQTFSDDENAQVLIFTERQETAEDLLSKLFKAKYFAVNTIHGA-------------KDQ  834

Query  418  RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQ  476
             D+ E I +F+ G LN+L+ATSVA  GLD+P   +V  +   T+    V   GR  RA  
Sbjct  835  TDRNEAINEFKQGLLNILIATSVAARGLDVPGLALVYNFDCPTHLEDYVHRCGRTGRAGN  894

Query  477  SVYAFVATEGSRELKREL-INEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAA  535
               A    E   + +  + I +AL+    +    +Q M  A +  K++   +        
Sbjct  895  KGLAVTLIENPGQERFAVHIVKALKESGAEVPDDLQAMANA-FHEKVKSGTEKYYNVGFK  953

Query  536  QAAQRE  541
                 E
Sbjct  954  GKGLDE  959


 Score = 48.3 bits (113),  Expect = 3e-04, Method: Composition-based stats.
 Identities = 54/326 (17%), Positives = 95/326 (29%), Gaps = 31/326 (10%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKV-----VVLVNRVHLV  60
            Q + I  A  G+++I    TG+GKT A    + +  L+            ++L     L 
Sbjct  571  QAQAIPIAESGRDLIGVAKTGSGKTLAFGIPMIRHVLDQRPLKPADGPIGLILAPTRELS  630

Query  61   TQHGEEFRRMLDGR--WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEE  118
             Q   E +  L+           G                +L  TA  L   L S     
Sbjct  631  LQIVNELKPFLNASGITIKCAYGGQPISDQIAMIKRGGIHILCATAGRLIDLLQSNSGR-  689

Query  119  HVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQ-----PLPQVLGLTASPGTG  173
             +     + +V+DE            +M     ++  R         P+ +   A     
Sbjct  690  VLSFRRITYVVLDEADRMFDMGFEPQVMKILASIRPDRQTILFSATFPKTMAALA--RKA  747

Query  174  GASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQ-------PCKQYNLCHRRSQ  226
                 +  I    ++   +     + P +   ++ +                 L     Q
Sbjct  748  LDKPAEVIIGGRSKVAPEITQHITIVPPSYEKKIAKLLHHLGQTFSDDENAQVLIFTERQ  807

Query  227  DPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR  286
            +   DLL KL    +  +     ++    Q    + +   +   L  L    V A  L  
Sbjct  808  ETAEDLLSKLFKAKYFAVNTIHGAK---DQTDRNEAINEFKQGLLNILIATSVAARGLDV  864

Query  287  YNDALLIHDTVRAVDALAALQDFYHR  312
               AL     V   D    L+D+ HR
Sbjct  865  PGLAL-----VYNFDCPTHLEDYVHR  885


>sp|Q5B0J9|DBP2_EMENI ATP-dependent RNA helicase dbp2 OS=Emericella 
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 
194 / M139) OX=227321 GN=dbp2 PE=3 SV=1
Length=563

 Score = 129 bits (325),  Expect = 2e-30, Method: Composition-based stats.
 Identities = 39/207 (19%), Positives = 80/207 (39%), Gaps = 19/207 (9%)

Query  297  VRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEK  356
             R     +A      R+  +       +  + ++     + +  +     E  K + + K
Sbjct  318  DRQTCMWSATWPKEVRQLASDFLNNYIQVNIGSMDLSANHRITQIVEVISEFEKRDRMIK  377

Query  357  ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT  416
             L++    +   + ++FT T++ A  +  +L+Q               G    S      
Sbjct  378  HLEKIME-NRGNKCLVFTGTKRIADEITRFLRQD--------------GWPALSIHGDKQ  422

Query  417  QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR---GRAR  473
            Q+++  V+ +F+ G   ++VAT VA  G+D+     V+ Y    N    V      GRA 
Sbjct  423  QQERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVINYDYPNNSEDYVHRIGRTGRAG  482

Query  474  ADQSVYAFVATEGSRELKRELINEALE  500
            A  +   F  T+ +++  R+L+    E
Sbjct  483  AKGTAITFFTTDNAKQ-ARDLVTILSE  508


 Score = 52.5 bits (124),  Expect = 1e-05, Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 49/129 (38%), Gaps = 11/129 (9%)

Query  14   ALEGKNIIIWLPTGAGKTRA----AAYVA--KRHLETVDGAKVVVLVNRVHLVTQHGEEF  67
            AL G++++    TG+GKT +    A      +  L   DG  V++L     L  Q   E 
Sbjct  174  ALSGRDVVGIAETGSGKTLSYCLPAIVHINAQPLLAPGDGPIVLILAPTRELAVQIQAEI  233

Query  68   RRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS  126
             +     R   T + G +        L+R  ++ I T   L   L    E     L   +
Sbjct  234  SKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDML----EAGRTNLRRVT  289

Query  127  LIVVDECHH  135
             +V+DE   
Sbjct  290  YLVLDEADR  298


>sp|A1DGZ7|DBP2_NEOFI ATP-dependent RNA helicase dbp2 OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / 
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dbp2 
PE=3 SV=1
Length=545

 Score = 129 bits (325),  Expect = 2e-30, Method: Composition-based stats.
 Identities = 41/207 (20%), Positives = 80/207 (39%), Gaps = 19/207 (9%)

Query  297  VRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEK  356
             R     +A      R+  T       +  + ++     + +  +     +  K + + K
Sbjct  297  DRQTCMWSATWPKEVRQLATDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIK  356

Query  357  ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT  416
             L++    +   + +IFT T++ A  +  +L+Q               G    S      
Sbjct  357  HLEKIME-NRGNKCLIFTGTKRIADEITRFLRQD--------------GWPALSIHGDKQ  401

Query  417  QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR---GRAR  473
            Q+++  V+ +F+ G   ++VAT VA  G+D+     V+ Y    N    +      GRA 
Sbjct  402  QQERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYIHRIGRTGRAG  461

Query  474  ADQSVYAFVATEGSRELKRELINEALE  500
            A  +   F  TE S++  R+L+    E
Sbjct  462  AKGTAITFFTTENSKQ-ARDLVTILTE  487


 Score = 53.3 bits (126),  Expect = 6e-06, Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 48/129 (37%), Gaps = 11/129 (9%)

Query  14   ALEGKNIIIWLPTGAGKTRA----AAYVA--KRHLETVDGAKVVVLVNRVHLVTQHGEEF  67
            AL G++++    TG+GKT      A      +  L   DG  V++L     L  Q   E 
Sbjct  153  ALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLILAPTRELAVQIQTEI  212

Query  68   RRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS  126
             +     R   T + G +        L+R  ++ I T   L   L    E     L   +
Sbjct  213  SKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDML----EAGRTNLRRVT  268

Query  127  LIVVDECHH  135
             +V+DE   
Sbjct  269  YLVLDEADR  277


>sp|Q5JKF2|RH40_ORYSJ DEAD-box ATP-dependent RNA helicase 40 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os01g0549400 PE=2 
SV=2
Length=792

 Score = 131 bits (329),  Expect = 2e-30, Method: Composition-based stats.
 Identities = 41/144 (28%), Positives = 62/144 (43%), Gaps = 21/144 (15%)

Query  348  NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG  407
            + KL  LE+IL+ Q    +  + +IF  T++    L   L +Q                G
Sbjct  379  SEKLRRLEQILRSQ---DSGSKVLIFCTTKRMCDQLARTLTRQ---------------FG  420

Query  408  NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
             S+     +Q ++++V+  F+ G   +LVAT VA  GLDI    VV+ Y   T     V 
Sbjct  421  ASAIHGDKSQSEREKVLSHFRSGRSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVH  480

Query  468  AR---GRARADQSVYAFVATEGSR  488
                 GRA A    Y F   + S+
Sbjct  481  RIGRTGRAGATGVAYTFFCDQDSK  504


 Score = 62.9 bits (151),  Expect = 7e-09, Method: Composition-based stats.
 Identities = 62/314 (20%), Positives = 105/314 (33%), Gaps = 31/314 (10%)

Query  14   ALEGKNIIIWLPTGAGKT-------RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEE  66
            AL+ ++++    TG+GKT              + +  +     V+VL     L TQ  EE
Sbjct  184  ALQCQDVVAIAKTGSGKTLGYLLPGFMHIKRLQNNPRSGPT--VLVLAPTRELATQILEE  241

Query  67   FRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF  125
              +     R + T L G          L R  D+++ T   L   L    E   + L   
Sbjct  242  AVKFGRSSRISSTCLYGGAPKGPQLRDLDRGVDVVVATPGRLNDIL----EMRRISLKQV  297

Query  126  SLIVVDECHH---THKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS-PGTGGASKLDGA  181
            S +V+DE         +     I+ +          P  Q L  TA+ P        D  
Sbjct  298  SYLVLDEADRMLDMGFEPQIRKIVKEI--------PPRRQTLMYTATWPKEVRRIAEDLL  349

Query  182  INHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIH  241
            ++ V     ++D     S      +L   S++  ++     R        L+     ++ 
Sbjct  350  VHPVQVTIGSVDELVANSAITQNVELITPSEK-LRRLEQILRSQDSGSKVLIFCTTKRMC  408

Query  242  DHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV-  300
            D L    L+R+FG         +      L+  +  R   L         L    +R V 
Sbjct  409  DQLART-LTRQFGASAIHGDKSQSEREKVLSHFRSGRSPILVATDVAARGLDIKDIRVVI  467

Query  301  --DALAALQDFYHR  312
              D    ++D+ HR
Sbjct  468  NYDFPTGIEDYVHR  481


>sp|Q7RY59|RRP3_NEUCR ATP-dependent rRNA helicase rrp-3 OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 
/ DSM 1257 / FGSC 987) OX=367110 GN=rrp-3 PE=3 SV=1
Length=515

 Score = 129 bits (323),  Expect = 2e-30, Method: Composition-based stats.
 Identities = 44/177 (25%), Positives = 77/177 (44%), Gaps = 20/177 (11%)

Query  370  GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD  429
             IIFTRT      + + L+               +G G       ++Q  +   + KF+ 
Sbjct  333  IIIFTRTVLETQRIAILLRT--------------LGMGAIPLHGGLSQSARLGALNKFRA  378

Query  430  GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSR  488
            G+  +LVAT VA  GLDIP+ + V+ + L  +  + V   GR ARA +S +A        
Sbjct  379  GSREILVATDVAARGLDIPNVDCVINHDLPQDSKTYVHRVGRTARAGKSGHAISIVTQYD  438

Query  489  ELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQ  545
                  I  AL   +++    ++K +   ++ ++ + Q+ A   R    +  ENQ +
Sbjct  439  LEIWLRIEAALGHKLDEYP--LEKDEVMVFKPRVEEAQRHA---RNEMKSLMENQGK  490


 Score = 65.6 bits (158),  Expect = 7e-10, Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 94/280 (34%), Gaps = 15/280 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q + I  AL+ ++II    TG+GKT A A  + +  L+       +VL     L  Q  +
Sbjct  117  QEQSIPLALQNRDIIGIAETGSGKTAAFALPILQALLDKPAPLFALVLAPTRELAAQIAQ  176

Query  66   EFRRMLDGRW-TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
             F  +          + G M        L +   +++ T   L   L   +      L  
Sbjct  177  AFEALGSLISLRCALILGGMDMVTQAIALGKKPHVIVATPGRLLDHLEKTKG---FSLRS  233

Query  125  FSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINH  184
               +V+DE      D  +  I+ + L+   +      +    +A+  +   S    ++  
Sbjct  234  MQYLVMDEADRLL-DMDFGPILEKILKFLPRER----RTFLFSATMSSKVESLQRASLRD  288

Query  185  VLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHL  244
             L++  + + +  +S          H  +      LC     + F      +  +     
Sbjct  289  PLKVSVSSNKYATVSTLKSNYVFIPHMHKDTYLVYLC-----NEFAGQTIIIFTRTVLET  343

Query  245  EMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHL  284
            +   +  +            LS++A L  L + R  +  +
Sbjct  344  QRIAILLRTLGMGAIPLHGGLSQSARLGALNKFRAGSREI  383


>sp|A5DLE0|DBP8_PICGU ATP-dependent RNA helicase DBP8 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DBP8 PE=3 
SV=2
Length=433

 Score = 127 bits (320),  Expect = 2e-30, Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 88/216 (41%), Gaps = 31/216 (14%)

Query  346  PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
            P   K   L  IL            I+F     +A  L   L++      +DIR   L  
Sbjct  234  PSYVKEAYLHNILVS--PKYEKASAIVFVNRTYTAEILRRTLRK------LDIRVASL--  283

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM  465
                   + M Q ++   + +F+ G   +L+AT VA  GLDIP+  +VV   +  +    
Sbjct  284  ------HSEMPQSERTNSLHRFRAGAARVLIATDVASRGLDIPNVELVVNQDIPADPDDY  337

Query  466  VQARGR-ARADQSVYA-----------FVATEGSRELKRELINEAL-ETLMEQAVAAVQK  512
            +   GR ARA +   +            +A E     K +L+ E   + +++++++ V  
Sbjct  338  IHRVGRTARAGKKGGSVSIVSEKDVERILAIENHINKKMDLLEEVNDDKIIKESLSIVTA  397

Query  513  MDQAEYQAKIRD--LQQAALTKRAAQAAQRENQRQQ  546
              +       ++   ++  + KR  +   R++++++
Sbjct  398  AKRESVADMEKEGFGEKRKINKRKREERTRDSKKRK  433


 Score = 57.5 bits (137),  Expect = 2e-07, Method: Composition-based stats.
 Identities = 63/402 (16%), Positives = 120/402 (30%), Gaps = 44/402 (11%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQ---  62
            Q E I   L G++ I    TG+GKT A AA +  +  E   G   +VL     L  Q   
Sbjct  28   QAECIPQILAGRDCIGGAKTGSGKTIAFAAPMMTKWSEDPFGIYGLVLTPTRELALQIAE  87

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
                    ++ +  V     DM  +A    + +    +I T   L   + +  ++    L
Sbjct  88   QFLALGASMNIKVAVVVGGEDMVKQAL--EIQKSPHFIIATPGRLADHILNSGDDTVGGL  145

Query  123  TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS-----------PG  171
                 +V+DE      ++  + +   +  L     +   Q L  TA+           P 
Sbjct  146  KRIKFLVLDEADRLLSNSFGSDLERCFKILPDASKR---QTLLFTATVTDAVRALKDKPV  202

Query  172  TGGASKL---DGAINHVLQLCANLDTWCIMSPQNCCPQLQEHS-----QQPCKQYNLCHR  223
              G   +   +      + + A L    +  P         +       +        +R
Sbjct  203  PEGKKPVFIHEIVSKDQVAIPATLTISYVFVPSYVKEAYLHNILVSPKYEKASAIVFVNR  262

Query  224  RSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALH  283
                       + +D     L       +    ++         A A   L    V +  
Sbjct  263  TYTAEILRRTLRKLDIRVASLHSEMPQSERTNSLHR------FRAGAARVLIATDVASRG  316

Query  284  LRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLAT  343
            L   N  L+++  +       A  D Y        +       +  + +     +  LA 
Sbjct  317  LDIPNVELVVNQDI------PADPDDYIHRVGRTARAGKKGGSVSIVSEKDVERI--LAI  368

Query  344  HGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLL  385
                N K+++LE++             I+    R+S   +  
Sbjct  369  ENHINKKMDLLEEV--NDDKIIKESLSIVTAAKRESVADMEK  408


>sp|A5E1W4|DBP3_LODEL ATP-dependent RNA helicase DBP3 OS=Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=DBP3 PE=3 SV=2
Length=535

 Score = 129 bits (324),  Expect = 2e-30, Method: Composition-based stats.
 Identities = 63/352 (18%), Positives = 122/352 (35%), Gaps = 64/352 (18%)

Query  227  DPFGDLLKKLMDQIHDHLEMPELS--RKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHL  284
             P  +L  ++ D + D     ++S    +G    + Q+ K+   A +      R+  L  
Sbjct  202  SPTRELALQIYDNLEDLTRGTDVSCVAIYGGVSKDDQIKKIRNGANVVVATPGRLVDLIN  261

Query  285  RRYND-----ALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELA  339
                D      L++ +  R ++     + F     +         R+ L        E+ 
Sbjct  262  DGAVDLSSINYLVLDEADRMLE-----KGFEEDIKLIIGSTPAQGRQTLMFTATWPKEVR  316

Query  340  HLATH-----------------------------GPENPKLEMLEKILQRQFSSSN-SPR  369
             LA +                               +  K + L  +LQ+  ++ N   +
Sbjct  317  ELANNFMNQPVKVTIGDRDELSANKRITQIVEVLDDKFQKEKKLINLLQKYQNTGNGDNK  376

Query  370  GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD  429
             ++F   ++ A  +   L + +       +   + G         ++Q+ + + +Q F+ 
Sbjct  377  ILVFALYKKEASRIESLLHRNK------FKVAAIHG--------DLSQQQRTQALQSFKS  422

Query  430  GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGS  487
            G  NLL+AT VA  GLDIP+   V+           V   GR  RA Q+  A    TE  
Sbjct  423  GECNLLLATDVAARGLDIPNVKYVINLTFPLTIEDYVHRLGRTGRAGQTGIAHTFFTEDE  482

Query  488  RELKREL------INEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKR  533
            + L   L       N+ +   + +     +K   + Y A  +D+     +K 
Sbjct  483  KHLSGALCNILRGANQPVPEALLKYGGHTKKKTHSVYGAFYKDVDMPIDSKE  534


 Score = 54.8 bits (130),  Expect = 2e-06, Method: Composition-based stats.
 Identities = 21/124 (17%), Positives = 47/124 (38%), Gaps = 7/124 (6%)

Query  15   LEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVV-LVNRVHLVTQHGEEFRRMLD  72
            L+GK+++    TG+GKT A         + + +    V+ +     L  Q  +    +  
Sbjct  161  LDGKDVVGVAETGSGKTFAFGVPAINNIITSKNKDLSVLCISPTRELALQIYDNLEDLTR  220

Query  73   G-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVD  131
            G   +   + G +        +    ++++ T   L   +        V+L+  + +V+D
Sbjct  221  GTDVSCVAIYGGVSKDDQIKKIRNGANVVVATPGRLVDLIND----GAVDLSSINYLVLD  276

Query  132  ECHH  135
            E   
Sbjct  277  EADR  280


>sp|Q61496|DDX4_MOUSE ATP-dependent RNA helicase DDX4 OS=Mus musculus 
OX=10090 GN=Ddx4 PE=1 SV=2
Length=702

 Score = 130 bits (327),  Expect = 2e-30, Method: Composition-based stats.
 Identities = 53/296 (18%), Positives = 103/296 (35%), Gaps = 54/296 (18%)

Query  255  TQMYEQQVVKLSEAAALAGLQEQRVYALHL-RRYNDALLIHDTVRAVDALAALQDFYHRE  313
                 Q V   +   A  G     +    +  +    L++ +  R +D     +    ++
Sbjct  379  GHSVRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGFGPEM---KK  435

Query  314  HVTKTQILCAERRLLALFDDRKNE----------------------------LAHLATHG  345
             ++   +   E+R   LF     E                            +       
Sbjct  436  LISCPGMPSKEQRQTLLFSATFPEEIQRLAGDFLKSSYLFVAVGQVGGACRDVQQTILQV  495

Query  346  PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
             +  K E L +IL+         R ++F  T++ A  +  +L Q++              
Sbjct  496  GQYSKREKLVEILRNI----GDERTMVFVETKKKADFIATFLCQEK--------------  537

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM  465
               +S      QR++++ +  F+ G   +LVATSVA  GLDI +   V+ + L +     
Sbjct  538  ISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEY  597

Query  466  VQARGR-ARADQSVYA--FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEY  518
            V   GR  R   +  A  F  T+    L + L+ + L    +   A ++++  + Y
Sbjct  598  VHRIGRTGRCGNTGRAISFFDTDSDNHLAQPLV-KVLSDAQQDVPAWLEEIAFSTY  652


 Score = 49.0 bits (115),  Expect = 1e-04, Method: Composition-based stats.
 Identities = 26/166 (16%), Positives = 56/166 (34%), Gaps = 16/166 (10%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRH----------LETVDGAKVVVLVNRVHLVTQHG  64
            L G++++    TG+GKT A       H           + +   + +++     L+ Q  
Sbjct  296  LAGRDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIY  355

Query  65   EEFRRM-LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELT  123
             E R+           + G          + +  ++L  T   L   +   +    + L 
Sbjct  356  LEARKFSFGTCVRAVVIYGGTQFGHSVRQIVQGCNILCATPGRLMDIIGKEK----IGLK  411

Query  124  VFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS  169
                +V+DE      D  +   M + +      ++   Q L  +A+
Sbjct  412  QVKYLVLDEADR-MLDMGFGPEMKKLISCPGMPSKEQRQTLLFSAT  456


>sp|Q0DM51|RH3_ORYSJ DEAD-box ATP-dependent RNA helicase 3, chloroplastic 
OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0827700 
PE=2 SV=2
Length=758

 Score = 131 bits (328),  Expect = 2e-30, Method: Composition-based stats.
 Identities = 43/211 (20%), Positives = 83/211 (39%), Gaps = 35/211 (17%)

Query  329  ALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQ  388
               +     +   A       K  +L  ++      +   + I+FT+T++ A  + L L 
Sbjct  316  DQDEKLAEGIKLYAIPLTSTSKRTVLSDLITVY---AKGGKTIVFTKTKRDADEVSLALT  372

Query  389  QQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIP  448
                               + +    ++Q  ++  +  F+ G   +LVAT VA  GLDIP
Sbjct  373  NS---------------IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP  417

Query  449  HCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGS-----RELKREL--------  494
            + ++++ Y L  +  + V   GR  RA ++  A +    S     R L+R++        
Sbjct  418  NVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTNSQRRTVRSLERDVGCRFDFIS  477

Query  495  ---INEALETLMEQAVAAVQKMDQAEYQAKI  522
               I + LE+  E  +A ++ +     Q  I
Sbjct  478  PPAIEDVLESSAEHVIATLRGVHTESIQYFI  508


 Score = 61.0 bits (146),  Expect = 3e-08, Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 58/136 (43%), Gaps = 14/136 (10%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGA--------KVVVLVNRV  57
            Q  V++PAL+G+++I    TG GKT A    + K+ +E  DG         +V+VL    
Sbjct  131  QRAVLIPALDGRDLIARAKTGTGKTLAFGIPMIKQLMEEDDGRSVRRGRIPRVLVLAPTR  190

Query  58   HLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE  117
             L  Q  +E +       TV    G +        L+R  D+++ T   +   +      
Sbjct  191  ELAKQVEKEIKESAPKLSTVCVYGG-VSYNVQQNALSRGVDVVVGTPGRIIDLING----  245

Query  118  EHVELTVFSLIVVDEC  133
              ++L     +V+DE 
Sbjct  246  GSLQLGEVKYLVLDEA  261


>sp|Q9C551|RH5_ARATH DEAD-box ATP-dependent RNA helicase 5 OS=Arabidopsis 
thaliana OX=3702 GN=RH5 PE=1 SV=1
Length=537

 Score = 129 bits (324),  Expect = 3e-30, Method: Composition-based stats.
 Identities = 63/334 (19%), Positives = 116/334 (35%), Gaps = 26/334 (8%)

Query  171  GTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFG  230
                  K+ G    V   C  L              +   + +PC   ++C         
Sbjct  176  VLKKNKKIGGGSKKVNPTC--LVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSK--  231

Query  231  DLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDA  290
                  +  I   +++   +      + E  V++LS+ + +   +  R+  +        
Sbjct  232  ---GPQISAIRSGVDIVIGTPGRLRDLIESNVLRLSDVSFVVLDEADRMLDMGFEEPVRF  288

Query  291  LLIHDT-VRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNE-LAHLATHGPEN  348
            +L +   VR +   +A       +   +       + ++   D   N  +  +     E 
Sbjct  289  ILSNTNKVRQMVMFSATWPLDVHKLAQEFMDPNPIKVIIGSVDLAANHDVMQIIEVLDER  348

Query  349  PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN  408
             + + L  +L  ++  S   R ++F   +  A  L  +LQQ+              G   
Sbjct  349  ARDQRLIALL-EKYHKSQKNRVLVFALYKVEAERLERFLQQR--------------GWKA  393

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
             S   +  Q ++   +  F++G+  LLVAT VA  GLDIP   VV+ Y         V  
Sbjct  394  VSIHGNKAQSERTRSLSLFKEGSCPLLVATDVAARGLDIPDVEVVINYTFPLTTEDYVHR  453

Query  469  RGR-ARADQSVYAF-VATEGSRELKRELINEALE  500
             GR  RA +   A    T  ++ L  EL+N   E
Sbjct  454  IGRTGRAGKKGVAHTFFTPLNKGLAGELVNVLRE  487


 Score = 47.5 bits (111),  Expect = 3e-04, Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 47/132 (36%), Gaps = 15/132 (11%)

Query  15   LEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDG-----AKV----VVLVNRVHLVTQHG  64
            L+G+++I    TG+GKT A         L+          KV    +VL     L  Q  
Sbjct  149  LDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQIS  208

Query  65   EEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELT  123
            +  R   +        + G          +    D++I T   L+  + S      + L+
Sbjct  209  DVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTPGRLRDLIESNV----LRLS  264

Query  124  VFSLIVVDECHH  135
              S +V+DE   
Sbjct  265  DVSFVVLDEADR  276


>sp|Q5R4I9|DDX5_PONAB Probable ATP-dependent RNA helicase DDX5 
OS=Pongo abelii OX=9601 GN=DDX5 PE=2 SV=1
Length=614

 Score = 130 bits (326),  Expect = 3e-30, Method: Composition-based stats.
 Identities = 50/318 (16%), Positives = 106/318 (33%), Gaps = 45/318 (14%)

Query  228  PFGDLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEAAALAGLQEQRV-----Y  280
            P  +L +++     ++     L     +G      Q+  L     +      R+      
Sbjct  175  PTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEC  234

Query  281  ALHLRRYNDALLIHDTVRAVD-----ALAALQDFYHREHVTKTQILCAERRLLALFDDRK  335
                 R    L++ +  R +D      +  + D    +  T        + +  L +D  
Sbjct  235  GKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFL  294

Query  336  NELAHLAT----------------HGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQS  379
             +  H+                     +  K E L + L  +  S    + I+F  T++ 
Sbjct  295  KDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIR-LMEEIMSEKENKTIVFVETKRR  353

Query  380  AHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATS  439
               L   +++               G          +Q+++  V+ +F+ G   +L+AT 
Sbjct  354  CDELTRKMRRD--------------GWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATD  399

Query  440  VAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINE  497
            VA  GLD+     V+ Y    +    +   GR AR+ ++  A+   T  + +   +LI+ 
Sbjct  400  VASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISV  459

Query  498  ALETLMEQAVAAVQKMDQ  515
              E         +Q ++ 
Sbjct  460  LREANQAINPKLLQLVED  477


 Score = 46.3 bits (108),  Expect = 8e-04, Method: Composition-based stats.
 Identities = 58/360 (16%), Positives = 111/360 (31%), Gaps = 38/360 (11%)

Query  14   ALEGKNIIIWLPTGAGKTRA----AAYVAKR--HLETVDGAKVVVLVNRVHLVTQ-HGEE  66
            AL G +++    TG+GKT +    A         LE  DG   +VL     L  Q     
Sbjct  128  ALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVA  187

Query  67   FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS  126
                   R   T + G          L R  ++ I T   L   L    E     L   +
Sbjct  188  AEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFL----ECGKTNLRRTT  243

Query  127  LIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVL  186
             +V+DE          + ++    E ++++     +       P              V 
Sbjct  244  YLVLDEA---------DRMLDMGFEPQIRKIVDQIR-------PDRQTLMWSATWPKEVR  287

Query  187  QLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEM  246
            QL  +      +       +L  +     +  ++CH   +D   + L +LM++I    E 
Sbjct  288  QLAEDF-LKDYIHINIGALELSANHNI-LQIVDVCHDVEKD---EKLIRLMEEIMSEKEN  342

Query  247  PELSRKFGTQMYEQQVVKLSEAAAL------AGLQEQRVYALHLRRYNDALLIHDTVRAV  300
              +      +  ++   K+               Q++R + L+  ++  A ++  T  A 
Sbjct  343  KTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVAS  402

Query  301  DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQR  360
              L      +   +           R+       K   A+         ++  L  +L+ 
Sbjct  403  RGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLRE  462


>sp|Q61656|DDX5_MOUSE Probable ATP-dependent RNA helicase DDX5 
OS=Mus musculus OX=10090 GN=Ddx5 PE=1 SV=2
Length=614

 Score = 130 bits (326),  Expect = 3e-30, Method: Composition-based stats.
 Identities = 50/318 (16%), Positives = 106/318 (33%), Gaps = 45/318 (14%)

Query  228  PFGDLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEAAALAGLQEQRV-----Y  280
            P  +L +++     ++     L     +G      Q+  L     +      R+      
Sbjct  175  PTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEC  234

Query  281  ALHLRRYNDALLIHDTVRAVD-----ALAALQDFYHREHVTKTQILCAERRLLALFDDRK  335
                 R    L++ +  R +D      +  + D    +  T        + +  L +D  
Sbjct  235  GKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFL  294

Query  336  NELAHLAT----------------HGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQS  379
             +  H+                     +  K E L + L  +  S    + I+F  T++ 
Sbjct  295  KDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIR-LMEEIMSEKENKTIVFVETKRR  353

Query  380  AHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATS  439
               L   +++               G          +Q+++  V+ +F+ G   +L+AT 
Sbjct  354  CDELTRKMRRD--------------GWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATD  399

Query  440  VAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINE  497
            VA  GLD+     V+ Y    +    +   GR AR+ ++  A+   T  + +   +LI+ 
Sbjct  400  VASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISV  459

Query  498  ALETLMEQAVAAVQKMDQ  515
              E         +Q ++ 
Sbjct  460  LREANQAINPKLLQLVED  477


 Score = 46.3 bits (108),  Expect = 8e-04, Method: Composition-based stats.
 Identities = 58/360 (16%), Positives = 111/360 (31%), Gaps = 38/360 (11%)

Query  14   ALEGKNIIIWLPTGAGKTRA----AAYVAKR--HLETVDGAKVVVLVNRVHLVTQ-HGEE  66
            AL G +++    TG+GKT +    A         LE  DG   +VL     L  Q     
Sbjct  128  ALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVA  187

Query  67   FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS  126
                   R   T + G          L R  ++ I T   L   L    E     L   +
Sbjct  188  AEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFL----ECGKTNLRRTT  243

Query  127  LIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVL  186
             +V+DE          + ++    E ++++     +       P              V 
Sbjct  244  YLVLDEA---------DRMLDMGFEPQIRKIVDQIR-------PDRQTLMWSATWPKEVR  287

Query  187  QLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEM  246
            QL  +      +       +L  +     +  ++CH   +D   + L +LM++I    E 
Sbjct  288  QLAEDF-LKDYIHINIGALELSANHNI-LQIVDVCHDVEKD---EKLIRLMEEIMSEKEN  342

Query  247  PELSRKFGTQMYEQQVVKLSEAAAL------AGLQEQRVYALHLRRYNDALLIHDTVRAV  300
              +      +  ++   K+               Q++R + L+  ++  A ++  T  A 
Sbjct  343  KTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVAS  402

Query  301  DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQR  360
              L      +   +           R+       K   A+         ++  L  +L+ 
Sbjct  403  RGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLRE  462


>sp|P17844|DDX5_HUMAN Probable ATP-dependent RNA helicase DDX5 
OS=Homo sapiens OX=9606 GN=DDX5 PE=1 SV=1
Length=614

 Score = 130 bits (326),  Expect = 3e-30, Method: Composition-based stats.
 Identities = 50/318 (16%), Positives = 106/318 (33%), Gaps = 45/318 (14%)

Query  228  PFGDLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEAAALAGLQEQRV-----Y  280
            P  +L +++     ++     L     +G      Q+  L     +      R+      
Sbjct  175  PTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEC  234

Query  281  ALHLRRYNDALLIHDTVRAVD-----ALAALQDFYHREHVTKTQILCAERRLLALFDDRK  335
                 R    L++ +  R +D      +  + D    +  T        + +  L +D  
Sbjct  235  GKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFL  294

Query  336  NELAHLAT----------------HGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQS  379
             +  H+                     +  K E L + L  +  S    + I+F  T++ 
Sbjct  295  KDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIR-LMEEIMSEKENKTIVFVETKRR  353

Query  380  AHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATS  439
               L   +++               G          +Q+++  V+ +F+ G   +L+AT 
Sbjct  354  CDELTRKMRRD--------------GWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATD  399

Query  440  VAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINE  497
            VA  GLD+     V+ Y    +    +   GR AR+ ++  A+   T  + +   +LI+ 
Sbjct  400  VASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISV  459

Query  498  ALETLMEQAVAAVQKMDQ  515
              E         +Q ++ 
Sbjct  460  LREANQAINPKLLQLVED  477


 Score = 46.3 bits (108),  Expect = 8e-04, Method: Composition-based stats.
 Identities = 58/360 (16%), Positives = 111/360 (31%), Gaps = 38/360 (11%)

Query  14   ALEGKNIIIWLPTGAGKTRA----AAYVAKR--HLETVDGAKVVVLVNRVHLVTQ-HGEE  66
            AL G +++    TG+GKT +    A         LE  DG   +VL     L  Q     
Sbjct  128  ALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVA  187

Query  67   FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS  126
                   R   T + G          L R  ++ I T   L   L    E     L   +
Sbjct  188  AEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFL----ECGKTNLRRTT  243

Query  127  LIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVL  186
             +V+DE          + ++    E ++++     +       P              V 
Sbjct  244  YLVLDEA---------DRMLDMGFEPQIRKIVDQIR-------PDRQTLMWSATWPKEVR  287

Query  187  QLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEM  246
            QL  +      +       +L  +     +  ++CH   +D   + L +LM++I    E 
Sbjct  288  QLAEDF-LKDYIHINIGALELSANHNI-LQIVDVCHDVEKD---EKLIRLMEEIMSEKEN  342

Query  247  PELSRKFGTQMYEQQVVKLSEAAAL------AGLQEQRVYALHLRRYNDALLIHDTVRAV  300
              +      +  ++   K+               Q++R + L+  ++  A ++  T  A 
Sbjct  343  KTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVAS  402

Query  301  DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQR  360
              L      +   +           R+       K   A+         ++  L  +L+ 
Sbjct  403  RGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLRE  462


>sp|Q4PFD9|PRP5_USTMA Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Ustilago maydis (strain 521 / FGSC 9021) OX=237631 
GN=PRP5 PE=3 SV=1
Length=1156

 Score = 131 bits (329),  Expect = 3e-30, Method: Composition-based stats.
 Identities = 58/343 (17%), Positives = 110/343 (32%), Gaps = 47/343 (14%)

Query  212  QQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEAA  269
            Q+P +           P  +L  ++  ++   ++   L     +G     +Q+ ++ + A
Sbjct  541  QRPVEPSEGPVGIIMTPTRELAVQIYREMRPFIKALGLRAACVYGGAPISEQIAEMKKTA  600

Query  270  ALAGLQEQRVYAL--------HLRRYNDALLIHDTVRAVD--------------------  301
             +      R+  L                L++ +  R  D                    
Sbjct  601  DIVVATPGRLIDLLTANSGRVTNLYRVTYLVLDEADRMFDMGFEPQVMKILNNIRPDRQT  660

Query  302  -ALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQR  360
               +A           K          +        E+  +     E+ K   L +IL  
Sbjct  661  VLFSATFPKQMESLARKVLKNKPLEITVGGRSVVAAEIEQIVEVRSEDTKFHRLLEILGE  720

Query  361  QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ  420
             ++     R +IF   +++A  LL  L ++              G    S      Q D+
Sbjct  721  LYNREKDARTLIFVDRQEAADDLLKDLIRK--------------GYVTMSLHGGKDQVDR  766

Query  421  QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVY  479
             E I  F+ G + ++ ATSVA  GLD+    +V+ Y +  +    V   GR  RA Q   
Sbjct  767  DETISDFKAGNVPIVTATSVAARGLDVKQLKLVINYDVPNHMEDYVHRAGRTGRAGQKGT  826

Query  480  AFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKI  522
                    ++     I  AL+         ++ M  A ++ K+
Sbjct  827  CITFITPEQDRYARDIIAALKASAAHVPPELEAM-AASFKEKL  868


 Score = 54.0 bits (128),  Expect = 4e-06, Method: Composition-based stats.
 Identities = 51/325 (16%), Positives = 105/325 (32%), Gaps = 32/325 (10%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKV------VVLVNRVHLV  60
            Q + +   + G++II    TG+GKT A      RH++     +       +++     L 
Sbjct  503  QSQAMPAIMSGRDIIGVAKTGSGKTMAFLLPMFRHIKDQRPVEPSEGPVGIIMTPTRELA  562

Query  61   TQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
             Q   E R  +         + G          + +  D+++ T   L   LT+      
Sbjct  563  VQIYREMRPFIKALGLRAACVYGGAPISEQIAEMKKTADIVVATPGRLIDLLTANSGR-V  621

Query  120  VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS-P--------  170
              L   + +V+DE            +M     ++  R   L      +A+ P        
Sbjct  622  TNLYRVTYLVLDEADRMFDMGFEPQVMKILNNIRPDRQTVL-----FSATFPKQMESLAR  676

Query  171  GTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFG  230
                   L+  +     + A  +   I+  ++   +     +   + YN         F 
Sbjct  677  KVLKNKPLEITVGGRSVVAA--EIEQIVEVRSEDTKFHRLLEILGELYNREKDARTLIFV  734

Query  231  DLLKKLMDQIHDHLEMPELSRKF---GTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRY  287
            D  +   D + D +    ++        Q+   + +   +A  +  +    V A  L   
Sbjct  735  DRQEAADDLLKDLIRKGYVTMSLHGGKDQVDRDETISDFKAGNVPIVTATSVAARGLDVK  794

Query  288  NDALLIHDTVRAVDALAALQDFYHR  312
               L+I+      D    ++D+ HR
Sbjct  795  QLKLVIN-----YDVPNHMEDYVHR  814


>sp|Q4IP34|PRP5_GIBZE Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 
/ FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=PRP5 PE=3 
SV=3
Length=1191

 Score = 131 bits (329),  Expect = 3e-30, Method: Composition-based stats.
 Identities = 62/339 (18%), Positives = 111/339 (33%), Gaps = 47/339 (14%)

Query  214  PCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAAAL  271
            P K  +        P  +L  ++       L+M  L     +G     +Q+ +L   A +
Sbjct  628  PLKDTDGPIGLIMTPTRELAVQIHKDCKPFLKMMGLRAVCAYGGAPIREQIAELKRGAEI  687

Query  272  AGLQEQRVYAL---------HLRRYNDALLIHDTVRAVD--------------------A  302
                  R+  L         +L+R    +++ +  R  D                     
Sbjct  688  IVCTPGRMIDLLAANQGRVTNLKR-VTYVVLDEADRMFDMGFEPQVMKIFANMRPDRQTI  746

Query  303  LAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQF  362
            L +       + +TK  +       +        E+  +     E  K   + ++L   +
Sbjct  747  LFSATMPRIIDSLTKKVLKNPIEVTVGGRSVVAKEIEQIVEVRDEPSKFHRVLELLGELY  806

Query  363  SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE  422
                  R +IF   ++ A  LL  L               + G    S      Q D+  
Sbjct  807  DRDEDARTLIFVERQEKADDLLKELM--------------MKGYPCMSIHGGKDQIDRDS  852

Query  423  VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF  481
             I  F+ G + +L+ATSVA  GLD+    +V+ Y    +    V   GR  RA  +  A 
Sbjct  853  TISDFKKGVVPILIATSVAARGLDVKQLKLVINYDAPNHLEDYVHRAGRTGRAGNTGVAV  912

Query  482  VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA  520
                  +E     I +ALE   +     + +M +A  + 
Sbjct  913  TFVTPEQENCAPGIAKALEQSGQPIPDRLNEMRKAHREK  951


 Score = 73.7 bits (179),  Expect = 4e-12, Method: Composition-based stats.
 Identities = 57/323 (18%), Positives = 110/323 (34%), Gaps = 29/323 (9%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYV-AKRHLETVDGAK------VVVLVNRVHL  59
            Q + +   + G+++I    TG+GKT  A  +   RH++     K       +++     L
Sbjct  588  QMQALPALMSGRDVIGVAKTGSGKT-VAFLLPMFRHIKDQPPLKDTDGPIGLIMTPTREL  646

Query  60   VTQHGEEFRRMLD--GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE  117
              Q  ++ +  L   G   V    G          L R  ++++CT   +   L + +  
Sbjct  647  AVQIHKDCKPFLKMMGLRAVCAYGGAPIREQI-AELKRGAEIIVCTPGRMIDLLAANQGR  705

Query  118  EHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQ-----PLPQVLG-LTASPG  171
                L   + +V+DE            +M  +  ++  R        +P+++  LT    
Sbjct  706  -VTNLKRVTYVVLDEADRMFDMGFEPQVMKIFANMRPDRQTILFSATMPRIIDSLTKKVL  764

Query  172  TGGASKLDGAINHVLQLCANLDTWCIMSPQNCC--PQLQEHSQQPCKQYNLCHRRSQDPF  229
                    G  + V +    +        +       L E   +      L     Q+  
Sbjct  765  KNPIEVTVGGRSVVAKEIEQIVEVRDEPSKFHRVLELLGELYDRDEDARTLIFVERQEKA  824

Query  230  GDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND  289
             DLLK+LM + +  + +         Q+     +   +   +  L    V A  L     
Sbjct  825  DDLLKELMMKGYPCMSIHGGK----DQIDRDSTISDFKKGVVPILIATSVAARGLDVKQL  880

Query  290  ALLIHDTVRAVDALAALQDFYHR  312
             L+I+      DA   L+D+ HR
Sbjct  881  KLVIN-----YDAPNHLEDYVHR  898


>sp|Q9LUW6|RH9_ARATH DEAD-box ATP-dependent RNA helicase 9, mitochondrial 
OS=Arabidopsis thaliana OX=3702 GN=RH9 PE=1 SV=1
Length=610

 Score = 129 bits (325),  Expect = 3e-30, Method: Composition-based stats.
 Identities = 53/318 (17%), Positives = 122/318 (38%), Gaps = 41/318 (13%)

Query  228  PFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR--  285
            P  +L +++  +  +     +    +G     QQ+ +L+    +A     R+  L  R  
Sbjct  198  PTRELARQVEKEFRESAPSLDTICLYGGTPIGQQMRELNYGIDVAVGTPGRIIDLMKRGA  257

Query  286  ---RYNDALLIHDTVRAVDALAA--LQDFYHREHVTKTQILCA---ERRLLALFDDRKNE  337
                    +++ +  + +    A  ++    +    +  ++ +      + +L     N 
Sbjct  258  LNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQSMMFSATMPSWIRSLTKKYLNN  317

Query  338  LAHLATHGPENPKLE---MLEKILQRQF-----------SSSNSPRGIIFTRTRQSAHSL  383
               +   G  + KL     +  I    +                 + I+FT+T++ A  L
Sbjct  318  PLTIDLVGDSDQKLADGITMYSIAADSYGRASIIGPLVKEHGKGGKCIVFTQTKRDADRL  377

Query  384  LLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEE  443
               L +         + + L G         ++Q  ++  +  F+DG  ++LVAT VA  
Sbjct  378  AFGLAK-------SYKCEALHG--------DISQAQRERTLAGFRDGNFSILVATDVAAR  422

Query  444  GLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETL  502
            GLD+P+ ++V+ Y L  N  + V   GR  RA +   A +     +    ++I + + + 
Sbjct  423  GLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHGQDQTRAVKMIEKEVGSR  482

Query  503  MEQAVA-AVQKMDQAEYQ  519
              +  + AV++   + ++
Sbjct  483  FNELPSIAVERGSASMFE  500


 Score = 56.0 bits (133),  Expect = 8e-07, Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 52/134 (39%), Gaps = 12/134 (9%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTR-----AAAYVAKRHLETVDGA--KVVVLVNRVHL  59
            Q  V+ PA+EG+++I    TG GKT          + K + +   G   + +VL     L
Sbjct  143  QKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVLAPTREL  202

Query  60   VTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
              Q  +EFR       T+    G    +     L    D+ + T   +   +    +   
Sbjct  203  ARQVEKEFRESAPSLDTICLYGGTPIGQQMR-ELNYGIDVAVGTPGRIIDLM----KRGA  257

Query  120  VELTVFSLIVVDEC  133
            + L+    +V+DE 
Sbjct  258  LNLSEVQFVVLDEA  271


>sp|A6QXC1|DBP3_AJECN ATP-dependent RNA helicase DBP3 OS=Ajellomyces 
capsulatus (strain NAm1 / WU24) OX=2059318 GN=DBP3 PE=3 
SV=1
Length=487

 Score = 128 bits (321),  Expect = 3e-30, Method: Composition-based stats.
 Identities = 61/352 (17%), Positives = 115/352 (33%), Gaps = 70/352 (20%)

Query  234  KKLMDQIHDHL-----EMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALH-----  283
            ++L  QIHD L         L+  +G    + Q   L +A+ +      R+   H     
Sbjct  153  RELAMQIHDQLVKFTPNGVGLACIYGGASKDDQRRALKKASVIVA-TPGRLKDFHSDESL  211

Query  284  LRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNELA  339
              +    L++ +  R +D     + F        + +  + +R   +F         +LA
Sbjct  212  NLKKVKYLVLDEADRMLD-----KGFEQDIKDIVSAMPSSRKRQTVMFTATWPISVRKLA  266

Query  340  HLATHGPENP---------------------------KLEMLEKILQRQFSSSNS-PRGI  371
                  P                              K   L  +L +     N+  + +
Sbjct  267  TTFMKEPVTVTIGGDLSSDIRANTRIKQIVEVVKPENKESRLLSLLNQYQRGRNAMDKVL  326

Query  372  IFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGT  431
            +F   ++ A  +  +++ +              G   +     M Q ++   +  F+ G+
Sbjct  327  VFCLYKKEATRIERFIRSK--------------GFKVAGIHGDMNQTERFNSLDAFKSGS  372

Query  432  LNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRE  489
            + +LVAT VA  GLDIP   +V+           V   GR  RA     A  + TE  + 
Sbjct  373  VPVLVATDVAARGLDIPAVKLVLNVTFPLTVEDYVHRIGRTGRAGSDGLAITMFTENDKA  432

Query  490  LKRELI------NEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAA  535
            L   L+      N+ +   + +    V+K     Y A  R+        +  
Sbjct  433  LSGGLVNILKGANQDIPEALLKFGTTVKKKQHDSYGAFFREADTMKTATKIK  484


 Score = 50.6 bits (119),  Expect = 4e-05, Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 41/125 (33%), Gaps = 11/125 (9%)

Query  17   GKNIIIWLPTGAGKTR------AAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRM  70
            G+++I    TG+GKT           +      +      V++     L  Q  ++  + 
Sbjct  107  GRDVIGVAETGSGKTLAFGVPCIRKVLEINASHSSFRISAVIITPTRELAMQIHDQLVKF  166

Query  71   LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV  130
                  +  + G          L +   +++ T   L+        +E + L     +V+
Sbjct  167  TPNGVGLACIYGGASKDDQRRALKKAS-VIVATPGRLKD----FHSDESLNLKKVKYLVL  221

Query  131  DECHH  135
            DE   
Sbjct  222  DEADR  226


>sp|A3LS22|RRP3_PICST ATP-dependent rRNA helicase RRP3 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=RRP3 PE=3 SV=3
Length=484

 Score = 128 bits (321),  Expect = 4e-30, Method: Composition-based stats.
 Identities = 63/326 (19%), Positives = 117/326 (36%), Gaps = 50/326 (15%)

Query  254  GTQMYEQQVVKLSEAAALAGLQEQRV--YALHLRRYNDALLIHDTVRAVDALAALQDFYH  311
            G      Q   L     +      R+  +  H + ++  +L +  +   D L  L+    
Sbjct  175  GGMDMMDQARDLMRKPHIIIATPGRIMDHLEHTKGFSLKMLKYFVMDEADKLLDLE---F  231

Query  312  REHVTKTQILCAERRLLALFD----DRKNELAHLATHGPE----NPKLEMLEKILQRQFS  363
               + K       +R   LF     ++  +L   + H P     + K +  + ++Q    
Sbjct  232  GPVLDKILKQIPSKRTTYLFSATMTNKIEKLQRASLHNPVRVAVSSKYQTADNLIQSMML  291

Query  364  SSNSPR---------------GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN  408
             S+  +                IIF RTR       +  +              ++G   
Sbjct  292  VSDGYKNTYLIHLLNEFVGKSIIIFARTRAHTQRTSILCR--------------ILGFSA  337

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
                  +TQ  +   + KF+ GT N+L+AT VA  GLDIP  +VV+ Y + T+  + V  
Sbjct  338  VPLHGDLTQAQRLGSLNKFKSGTANILIATDVAARGLDIPSVDVVINYDIPTDSKAYVHR  397

Query  469  RGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMD------QAEYQA  520
             GR ARA +S  +  + T+   E+   +     + L +        +D         Y  
Sbjct  398  VGRTARAGRSGKSISLVTQYDLEMYLRIEQSIQKKLPKDPSPPKAMLDALHVHVDRAYAE  457

Query  521  KIRDLQQAALTKRAAQAAQRENQRQQ  546
             IR  ++     R  +  + +  R++
Sbjct  458  AIRQTKEFHEKTRRGRRGKDDKDREE  483


 Score = 52.9 bits (125),  Expect = 7e-06, Method: Composition-based stats.
 Identities = 36/129 (28%), Positives = 48/129 (37%), Gaps = 5/129 (4%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q E I  ALEGK+II    TG+GKT A A  + +   E       +VL     L  Q  E
Sbjct  98   QSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWEAQTPYFGLVLAPARELAYQIKE  157

Query  66   EFRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
             F  +          L G M        L R   ++I T   +   L   +      L +
Sbjct  158  TFDALGSTMGVRTVCLVGGMDMMDQARDLMRKPHIIIATPGRIMDHLEHTKG---FSLKM  214

Query  125  FSLIVVDEC  133
                V+DE 
Sbjct  215  LKYFVMDEA  223


>sp|A7TJ36|DBP3_VANPO ATP-dependent RNA helicase DBP3 OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=DBP3 PE=3 SV=1
Length=530

 Score = 128 bits (322),  Expect = 4e-30, Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 81/211 (38%), Gaps = 23/211 (11%)

Query  333  DRKNELAHLATHGPENPKLEMLEKILQRQFSSSN-SPRGIIFTRTRQSAHSLLLWLQQQQ  391
                 +  +        K   L ++L++  S S    + +IF   ++ A  +   L    
Sbjct  331  SANKRITQIVEVIDPFKKERKLLELLKKYQSGSKKDDKVLIFALYKKEAARVERNLN---  387

Query  392  GLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN  451
                         G   S+    ++Q+ +   + +F+ G  ++L+AT VA  GLDIP+  
Sbjct  388  -----------YNGYKVSAIHGDLSQQQRTNALDEFKTGRSSILLATDVAARGLDIPNVK  436

Query  452  VVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELIN------EALETLM  503
             V+           V   GR  RA ++  A  + TE  + L   L+N      + +   +
Sbjct  437  TVINLTFPLTVEDYVHRIGRTGRAGKTGTAHTLFTEQEKHLAGSLVNVLNGAGQPVPEEL  496

Query  504  EQAVAAVQKMDQAEYQAKIRDLQQAALTKRA  534
            ++     +K + + Y A  +D+      K+ 
Sbjct  497  KKFGTHTKKKEHSAYGAFYKDVDMTKKAKKI  527


 Score = 55.2 bits (131),  Expect = 1e-06, Method: Composition-based stats.
 Identities = 52/340 (15%), Positives = 107/340 (31%), Gaps = 26/340 (8%)

Query  15   LEGKNIIIWLPTGAGKTRA----AAYVAKRHLETVDGA---KVVVLVNRVHLVTQHGEEF  67
            L GK++I    TG+GKT A    A         +  G    +V+++     L +Q  +  
Sbjct  150  LAGKDVIGVAETGSGKTFAFGVPAINNILTKSGSKPGKNGIQVLIISPTRELASQIYDNL  209

Query  68   RRMLDGR-WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS  126
              + D        + G +        L R   +++ T   L   +    +E    L+  +
Sbjct  210  VILTDKVGLECCCVYGGVPKDEQRTQLKRS-QVVVATPGRLLDLI----QEGAANLSNVN  264

Query  127  LIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVL  186
             +V+DE     +   +   +   +       +   Q L  TA+            +N  +
Sbjct  265  YLVLDEADRMLEKG-FEEDIKNIIRETKSTGR---QTLMFTATWPKEVRELASTFMNSPI  320

Query  187  QL----CANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHD  242
            ++       L     ++         +  ++  +        S+     L+  L  +   
Sbjct  321  KVSIGNTDELSANKRITQIVEVIDPFKKERKLLELLKKYQSGSKKDDKVLIFALYKKEAA  380

Query  243  HLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDA  302
             +E       +        + +     AL   +  R   L         L    V+ V  
Sbjct  381  RVERNLNYNGYKVSAIHGDLSQQQRTNALDEFKTGRSSILLATDVAARGLDIPNVKTVIN  440

Query  303  LAA---LQDFYHREHVTKTQILCAERRLLALFDDRKNELA  339
            L     ++D+ HR  + +T           LF +++  LA
Sbjct  441  LTFPLTVEDYVHR--IGRTGRAGKTGTAHTLFTEQEKHLA  478


>sp|A5A6J2|DDX5_PANTR Probable ATP-dependent RNA helicase DDX5 
OS=Pan troglodytes OX=9598 GN=DDX5 PE=2 SV=1
Length=614

 Score = 129 bits (324),  Expect = 4e-30, Method: Composition-based stats.
 Identities = 57/350 (16%), Positives = 118/350 (34%), Gaps = 51/350 (15%)

Query  170  PGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPF  229
            P    A ++        + C  L + CI       PQ+++  ++  +       R  D  
Sbjct  175  PTRELAQQVQQVAAEYCRACR-LKSTCIYGGAPKGPQIRD-LERGVENCIATPGRLIDFL  232

Query  230  GDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALA--GLQEQRVYALHLRRY  287
                  L    +  L+  +     G   +E Q+ K+ +        L     +   +R+ 
Sbjct  233  ECGKTNLRRTTYLVLDEADRMLDMG---FEPQIRKIVDQIRPDRQTLMWSATWPKEVRQL  289

Query  288  NDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPE  347
             +                L+D+ H               + AL     + +  +     +
Sbjct  290  AE--------------DFLKDYIHIN-------------IGALELSANHNILQIVDVCHD  322

Query  348  NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG  407
              K E L + L  +  S    + I+F  T++    L   +++               G  
Sbjct  323  VEKDEKLIR-LMEEIMSEKENKTIVFVETKRRCDELTRKMRRD--------------GWP  367

Query  408  NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
                    +Q+++  V+ +F+ G   +L+AT VA  GLD+     V+ Y    +    + 
Sbjct  368  AMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIH  427

Query  468  ARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQ  515
              GR AR+ ++  A+   T  + +   +LI+   E         +Q ++ 
Sbjct  428  RIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQLVED  477


 Score = 43.2 bits (100),  Expect = 0.007, Method: Composition-based stats.
 Identities = 58/360 (16%), Positives = 110/360 (31%), Gaps = 38/360 (11%)

Query  14   ALEGKNIIIWLPTGAGKTRA----AAYVAKR--HLETVDGAKVVVLVNRVHLVTQ-HGEE  66
            AL G +++    TG+GKT +    A         LE  DG   +VL     L  Q     
Sbjct  128  ALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVA  187

Query  67   FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS  126
                   R   T + G          L R  +  I T   L   L    E     L   +
Sbjct  188  AEYCRACRLKSTCIYGGAPKGPQIRDLERGVENCIATPGRLIDFL----ECGKTNLRRTT  243

Query  127  LIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVL  186
             +V+DE          + ++    E ++++     +       P              V 
Sbjct  244  YLVLDEA---------DRMLDMGFEPQIRKIVDQIR-------PDRQTLMWSATWPKEVR  287

Query  187  QLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEM  246
            QL  +      +       +L  +     +  ++CH   +D   + L +LM++I    E 
Sbjct  288  QLAEDF-LKDYIHINIGALELSANHNI-LQIVDVCHDVEKD---EKLIRLMEEIMSEKEN  342

Query  247  PELSRKFGTQMYEQQVVKLSEAAAL------AGLQEQRVYALHLRRYNDALLIHDTVRAV  300
              +      +  ++   K+               Q++R + L+  ++  A ++  T  A 
Sbjct  343  KTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVAS  402

Query  301  DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQR  360
              L      +   +           R+       K   A+         ++  L  +L+ 
Sbjct  403  RGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLRE  462


>sp|Q6YS30|RH5_ORYSJ DEAD-box ATP-dependent RNA helicase 5 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os07g0301200 PE=2 SV=1
Length=512

 Score = 128 bits (321),  Expect = 5e-30, Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 74/185 (40%), Gaps = 22/185 (12%)

Query  358  LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ  417
            L  ++  +   R ++F   ++ A  +   LQ++              G    S      Q
Sbjct  333  LLDKYHKAQRNRVLVFVLYKREATRVETMLQRR--------------GWSAVSVHGDKAQ  378

Query  418  RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQ  476
             D+ + +  F++G+  L++AT VA  GLDIP   VV+ Y         V   GR  RA +
Sbjct  379  HDRTKALSLFKEGSCPLMIATDVASRGLDIPDVEVVINYSYPLTTEDYVHRIGRTGRAGK  438

Query  477  SVYAF-VATEGSRELKRELINEALET------LMEQAVAAVQKMDQAEYQAKIRDLQQAA  529
               A    T+ ++ L  EL+N   E        + +    V+K +   Y +  ++++  A
Sbjct  439  KGVAHTFFTQENKGLAGELVNVLREAGQVVPPALTKFGTHVKKKESQIYGSHFKEIKADA  498

Query  530  LTKRA  534
                 
Sbjct  499  PKSTK  503


 Score = 50.6 bits (119),  Expect = 4e-05, Method: Composition-based stats.
 Identities = 26/132 (20%), Positives = 45/132 (34%), Gaps = 17/132 (13%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYV--AKRHLETVDGA-------KVVVLVNRVHLVTQHGE  65
            L+G++ I    TG+GKT  A  V         +          +V+VL     L  Q   
Sbjct  127  LDGRDFIGIAATGSGKT-IAFGVPALMHVRRKMGEKSAKKGVPRVLVLSPTREL-AQQIA  184

Query  66   EFRRMLDGRWTVTTLS--GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELT  123
            +          ++++   G          L    D++I T   ++  +    E     L 
Sbjct  185  DVLCEAGAPCGISSVCLYGGTSKGPQISALKSGVDIVIGTPGRMKDLI----EMGICRLN  240

Query  124  VFSLIVVDECHH  135
              S +V+DE   
Sbjct  241  DVSFVVLDEADR  252


>sp|A0A1D6LAB7|RH3B_MAIZE DEAD-box ATP-dependent RNA helicase 
3B, chloroplastic OS=Zea mays OX=4577 GN=RH3B PE=2 SV=1
Length=743

 Score = 129 bits (325),  Expect = 5e-30, Method: Composition-based stats.
 Identities = 65/378 (17%), Positives = 133/378 (35%), Gaps = 44/378 (12%)

Query  166  LTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRS  225
            L A   TG    L   I  + QL    D       +     +   +++  KQ     + S
Sbjct  128  LIARAKTGTGKTLAFGIPMIKQLIEQDDGRITRRGRTPRVLVLAPTRELAKQVEKEIKES  187

Query  226  QDPFGDL-------LKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQR  278
                G +            + +   +++   +      +     ++L E   L   +  +
Sbjct  188  APKLGTVCVYGGVSYNVQQNALSRGVDVVVGTPGRIIDLINGGSLQLGEVQYLVLDEADQ  247

Query  279  VYALHLRRYND-ALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNE  337
            + A+      +  L      R     +A    + ++   +         L+   D++  E
Sbjct  248  MLAVGFEEDVETILQQLPAGRQSMLFSATMPSWVKKLSRRYLNNPLTIDLVGDQDEKLAE  307

Query  338  -LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTV  396
             +   A       K  +L  ++      +   + I+FTRT++ A  + L L         
Sbjct  308  GIKLYAIPLTTTSKRTVLSDLITVY---AKGGKTIVFTRTKKDADEVSLALTNS------  358

Query  397  DIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY  456
                       + +    ++Q  ++  +  F+ G   +LVAT VA  GLDIP+ ++++ Y
Sbjct  359  ---------IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY  409

Query  457  GLLTNEISMVQARGR-ARADQSVYAFVATEGS-----RELKREL-----------INEAL  499
             L  +  + V   GR  RA ++  A +    S     + L+R++           I E L
Sbjct  410  ELPNDPETFVHRSGRTGRAGKAGTAILMFTSSQKRTVKSLERDVGCNFEFISPPSIEEVL  469

Query  500  ETLMEQAVAAVQKMDQAE  517
            E+  E  +A ++ +    
Sbjct  470  ESSAEHVIATLRGVHPES  487


 Score = 60.6 bits (145),  Expect = 3e-08, Method: Composition-based stats.
 Identities = 35/136 (26%), Positives = 58/136 (43%), Gaps = 14/136 (10%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGA--------KVVVLVNRV  57
            Q  V++PALEG+++I    TG GKT A    + K+ +E  DG         +V+VL    
Sbjct  115  QRAVLIPALEGRDLIARAKTGTGKTLAFGIPMIKQLIEQDDGRITRRGRTPRVLVLAPTR  174

Query  58   HLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE  117
             L  Q  +E +       TV    G +        L+R  D+++ T   +   +      
Sbjct  175  ELAKQVEKEIKESAPKLGTVCVYGG-VSYNVQQNALSRGVDVVVGTPGRIIDLING----  229

Query  118  EHVELTVFSLIVVDEC  133
              ++L     +V+DE 
Sbjct  230  GSLQLGEVQYLVLDEA  245


>sp|Q9SA27|RH36_ARATH DEAD-box ATP-dependent RNA helicase 36 OS=Arabidopsis 
thaliana OX=3702 GN=RH36 PE=2 SV=1
Length=491

 Score = 127 bits (319),  Expect = 5e-30, Method: Composition-based stats.
 Identities = 77/431 (18%), Positives = 151/431 (35%), Gaps = 79/431 (18%)

Query  149  YLELKLQRAQPLPQ-VLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQL  207
            +    L R    P  V  L  +P    A +L      +   C NL    I+   +   Q 
Sbjct  112  FALPILHRLAEDPYGVFALVVTPTRELAFQLAEQFKALGS-CLNLRCSVIVGGMDMLTQT  170

Query  208  QEHSQQPCK--------QYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYE  259
                 +P          +  L +     P     K L         + + + +     ++
Sbjct  171  MSLVSRPHIVITTPGRIKVLLENNPDVPPVFSRTKFL---------VLDEADRVLDVGFQ  221

Query  260  QQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQ  319
             ++  + +   L   ++  +++  +     ALL H + +A         FY      KT 
Sbjct  222  DELRTIFQC--LPKSRQTLLFSATMTSNLQALLEHSSNKA--------YFYEAYEGLKTV  271

Query  320  ILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQS  379
                ++ +   F+D+               K   L  IL +          +IF  T ++
Sbjct  272  DTLTQQFI---FEDKDA-------------KELYLVHILSQM-EDKGIRSAMIFVSTCRT  314

Query  380  AHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATS  439
               L L L + +                N +  +  +Q  +   + KF+ G + +L+AT 
Sbjct  315  CQRLSLMLDELE--------------VENIAMHSLNSQSMRLSALSKFKSGKVPILLATD  360

Query  440  VAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSREL---KREL  494
            VA  GLDIP  ++V+ Y +  +    V   GR ARA +   A  + TE   +L     E 
Sbjct  361  VASRGLDIPTVDLVINYDIPRDPRDYVHRVGRTARAGRGGLAVSIITETDVKLIHKIEEE  420

Query  495  INEALETLMEQAVA--------------AVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR  540
            + + +E   ++ +               A+ KM    ++ K++D ++      A +   +
Sbjct  421  VGKKMEPYNKKVITDSLEVTKVSKAKRVAMMKMLDNGFEDKVKDRRKLKRKTLADKGLLK  480

Query  541  ENQRQQFPVEH  551
            +  ++Q   E+
Sbjct  481  KRGKRQKSTEN  491


 Score = 45.9 bits (107),  Expect = 0.001, Method: Composition-based stats.
 Identities = 26/133 (20%), Positives = 45/133 (34%), Gaps = 7/133 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQ---  62
            Q   +   L G++++    TG+GKT A A      L         +V+     L  Q   
Sbjct  85   QTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHRLAEDPYGVFALVVTPTRELAFQLAE  144

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
              +     L+ R +V     DM  +     L     ++I T   +   L     +     
Sbjct  145  QFKALGSCLNLRCSVIVGGMDMLTQTM--SLVSRPHIVITTPGRI-KVLLENNPDVPPVF  201

Query  123  TVFSLIVVDECHH  135
            +    +V+DE   
Sbjct  202  SRTKFLVLDEADR  214


>sp|Q4R6M5|DDX5_MACFA Probable ATP-dependent RNA helicase DDX5 
OS=Macaca fascicularis OX=9541 GN=DDX5 PE=2 SV=1
Length=614

 Score = 129 bits (323),  Expect = 6e-30, Method: Composition-based stats.
 Identities = 50/318 (16%), Positives = 106/318 (33%), Gaps = 45/318 (14%)

Query  228  PFGDLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEAAALAGLQEQRV-----Y  280
            P  +L +++     ++     L     +G      Q+  L     +      R+      
Sbjct  175  PTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEC  234

Query  281  ALHLRRYNDALLIHDTVRAVD-----ALAALQDFYHREHVTKTQILCAERRLLALFDDRK  335
                 R    L++ +  R +D      +  + D    +  T        + +  L +D  
Sbjct  235  GKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFL  294

Query  336  NELAHLAT----------------HGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQS  379
             +  H+                     +  K E L + L  +  S    + I+F  T++ 
Sbjct  295  KDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIR-LMEEIMSEKENKTIVFVETKRR  353

Query  380  AHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATS  439
               L   +++               G          +Q+++  V+ +F+ G   +L+AT 
Sbjct  354  CDELTRKMRRD--------------GWPAMGIHGDKSQQERGWVLNEFKHGKAPILIATD  399

Query  440  VAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINE  497
            VA  GLD+     V+ Y    +    +   GR AR+ ++  A+   T  + +   +LI+ 
Sbjct  400  VASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISV  459

Query  498  ALETLMEQAVAAVQKMDQ  515
              E         +Q ++ 
Sbjct  460  LREANQAINPKLLQLVED  477


 Score = 46.3 bits (108),  Expect = 9e-04, Method: Composition-based stats.
 Identities = 58/360 (16%), Positives = 111/360 (31%), Gaps = 38/360 (11%)

Query  14   ALEGKNIIIWLPTGAGKTRA----AAYVAKR--HLETVDGAKVVVLVNRVHLVTQ-HGEE  66
            AL G +++    TG+GKT +    A         LE  DG   +VL     L  Q     
Sbjct  128  ALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVA  187

Query  67   FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS  126
                   R   T + G          L R  ++ I T   L   L    E     L   +
Sbjct  188  AEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFL----ECGKTNLRRTT  243

Query  127  LIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVL  186
             +V+DE          + ++    E ++++     +       P              V 
Sbjct  244  YLVLDEA---------DRMLDMGFEPQIRKIVDQIR-------PDRQTLMWSATWPKEVR  287

Query  187  QLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEM  246
            QL  +      +       +L  +     +  ++CH   +D   + L +LM++I    E 
Sbjct  288  QLAEDF-LKDYIHINIGALELSANHNI-LQIVDVCHDVEKD---EKLIRLMEEIMSEKEN  342

Query  247  PELSRKFGTQMYEQQVVKLSEAAAL------AGLQEQRVYALHLRRYNDALLIHDTVRAV  300
              +      +  ++   K+               Q++R + L+  ++  A ++  T  A 
Sbjct  343  KTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERGWVLNEFKHGKAPILIATDVAS  402

Query  301  DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQR  360
              L      +   +           R+       K   A+         ++  L  +L+ 
Sbjct  403  RGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLRE  462


>sp|Q4PHU9|DBP2_USTMA ATP-dependent RNA helicase DBP2 OS=Ustilago 
maydis (strain 521 / FGSC 9021) OX=237631 GN=DBP2 PE=3 SV=2
Length=552

 Score = 128 bits (321),  Expect = 6e-30, Method: Composition-based stats.
 Identities = 60/283 (21%), Positives = 101/283 (36%), Gaps = 50/283 (18%)

Query  253  FGTQMYEQQVVKLSEAAALAGLQEQRVY------ALHLRRYNDALLIHDTVRAVD-----  301
            +G      Q+  L   A +      R+         +LRR    L++ +  R +D     
Sbjct  238  YGGVPKGPQIRDLQRGAEICIATPGRLIDMVDAGKTNLRR-VTYLVMDEADRMLDMGFEP  296

Query  302  ----ALAALQDFYHREHVTKTQILCAERRLLALFDDR-------------KNELAHLATH  344
                 L  ++        + T      +RL   F +               + +  +   
Sbjct  297  QIRKILQQIRPDRQTLMFSATW-PKEVQRLAGDFLNNYAQVNIGSTELAANHNVKQIIEV  355

Query  345  GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI  404
              E  K   L   L+    S+ + + IIFT T++ A  L  +L+Q               
Sbjct  356  CTEFEKKGKLIGHLETI--SAENGKVIIFTSTKRVADDLTKFLRQD--------------  399

Query  405  GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
            G    +      Q+++  V+ +F+ G   ++VAT+VA  GLD+   + V+ Y   TN   
Sbjct  400  GWPALAIHGDKQQQERDWVLAEFKSGRSPIMVATAVASRGLDVKDISYVINYDFPTNTED  459

Query  465  MVQ---ARGRARADQSVYAFVATEGSRELKRELINEALETLME  504
             V      GRA    + Y +   E S+   RELI    E   E
Sbjct  460  YVHQIGRTGRAGRTGTAYTYFTPENSKS-ARELIGILREAKQE  501


 Score = 50.6 bits (119),  Expect = 4e-05, Method: Composition-based stats.
 Identities = 28/129 (22%), Positives = 46/129 (36%), Gaps = 11/129 (9%)

Query  14   ALEGKNIIIWLPTGAGKTR-AAAYVAKRH-----LETVDGAKVVVLVNRVHLVTQ-HGEE  66
            AL G++++    TG+GKT   A            L+  DG   ++L     L  Q   E 
Sbjct  164  ALSGRDLVAIAETGSGKTIGFALPAMVHINAQPLLKPGDGPIALILAPTRELANQIQVEC  223

Query  67   FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS  126
             R     R     + G +        L R  ++ I T   L   + + +      L   +
Sbjct  224  NRFGGSSRLRTCAVYGGVPKGPQIRDLQRGAEICIATPGRLIDMVDAGKTN----LRRVT  279

Query  127  LIVVDECHH  135
             +V+DE   
Sbjct  280  YLVMDEADR  288


>sp|Q3MSQ8|DDX4_PELLE Probable ATP-dependent RNA helicase DDX4 
OS=Pelophylax lessonae OX=45623 GN=ddx4 PE=2 SV=1
Length=724

 Score = 129 bits (324),  Expect = 6e-30, Method: Composition-based stats.
 Identities = 49/309 (16%), Positives = 115/309 (37%), Gaps = 24/309 (8%)

Query  218  YNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQ  277
            Y  C R      G  +   + QI +   +   +      +  ++ + L++   L   +  
Sbjct  388  YGTCVRPVVIYGGTQMFHSLKQISEGCNILCATPGRLLDVIRKEKIGLTKLRYLVLDEAD  447

Query  278  RVYALHLRRYNDALLIHDTV-----RAVDALAALQDFYHREHVTKTQILCAERRLLALFD  332
            R+  +  R   + LL    +     R     +A      +    +         ++    
Sbjct  448  RMLDMGFREDIENLLKSSGMPSKEERQTLMFSATFPSSIQSLAREILKPDYLFVVVGQVG  507

Query  333  DRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQG  392
               +++  +     E  K + L +ILQ       S R ++F +T++ A  +  +L Q++ 
Sbjct  508  GACSDVEQMVIEVDEFGKKDKLMEILQEI----GSERTMVFVKTKKKADFIATFLCQEK-  562

Query  393  LQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNV  452
                           ++S      Q++++  ++ F+ G   ++VATSVA  GLDI + + 
Sbjct  563  -------------VPSTSIHGDREQKERETALRDFRTGQCPVIVATSVAARGLDIENVSY  609

Query  453  VVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQ  511
            V+ + +  +    V   GR  R   +  A    +   + ++ +    ++ L +       
Sbjct  610  VINFDIPDDIDEYVHRIGRTGRCGNTGRAISFFDKRGDDEQRIARSLVKVLSDAHQEVPA  669

Query  512  KMDQAEYQA  520
             +++  + A
Sbjct  670  WLEEVAFSA  678


 Score = 47.5 bits (111),  Expect = 4e-04, Method: Composition-based stats.
 Identities = 23/130 (18%), Positives = 47/130 (36%), Gaps = 15/130 (12%)

Query  17   GKNIIIWLPTGAGKTRAAAYVAKRHL----------ETVDGAKVVVLVNRVHLVTQHGEE  66
            G++++    TG+GKT A       HL          +T+   + +++     L+ Q   +
Sbjct  323  GRDLMACAQTGSGKTAAFLLPILAHLMVKGVESSAFQTLKEPEAIIVAPTRELINQIYLD  382

Query  67   FRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF  125
             R+           + G          ++   ++L  T   L   +     +E + LT  
Sbjct  383  ARKFSYGTCVRPVVIYGGTQMFHSLKQISEGCNILCATPGRLLDVI----RKEKIGLTKL  438

Query  126  SLIVVDECHH  135
              +V+DE   
Sbjct  439  RYLVLDEADR  448


>sp|A4QSS5|DBP2_PYRO7 ATP-dependent RNA helicase DBP2 OS=Pyricularia 
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 
GN=DBP2 PE=3 SV=1
Length=548

 Score = 128 bits (321),  Expect = 6e-30, Method: Composition-based stats.
 Identities = 58/346 (17%), Positives = 116/346 (34%), Gaps = 50/346 (14%)

Query  193  DTWCIMSPQNCCPQLQEHSQQPCKQY-NLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSR  251
            +T    +   C P +   + QP     +        P  +L  ++  +I    +   +  
Sbjct  170  ETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLILAPTRELAVQIQAEISKFGKSSRIRN  229

Query  252  K--FGTQMYEQQVVKLSEAAALAGLQEQRVY------ALHLRRYNDALLIHDTVRAVD--  301
               +G      Q+  LS    +      R+         +LRR    L++ +  R +D  
Sbjct  230  TCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLESGKTNLRR-VTYLVLDEADRMLDMG  288

Query  302  -------ALAALQDFYHREHVTKTQILCAERRLLALFDDRKN------------ELAHLA  342
                    +  ++        + T              D                +  + 
Sbjct  289  FEPQIRKIIGQIRPDRQTLMWSATWPKEVRNMAADFLQDFIQVNIGSLDLSANHRITQIV  348

Query  343  THGPENPKLEMLEKILQRQFSSSNSP-RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQ  401
                E+ K + + + +++     +S  + +IF  T++ A  +  +L+Q            
Sbjct  349  EVVSESEKRDRMIRHMEKVMDGKDSKNKILIFVGTKRVADEITRFLRQD-----------  397

Query  402  LLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN  461
               G    S      Q ++  V+ +F+ G   ++VAT VA  G+D+ +   V+ Y    N
Sbjct  398  ---GWPALSIHGDKQQNERDWVLDQFKTGKSPIMVATDVASRGIDVRNITHVLNYDYPNN  454

Query  462  EISMVQAR---GRARADQSVYAFVATEGSRELKRELINEALETLME  504
                +      GRA A  +   F  TE S++  R+L+    E   E
Sbjct  455  SEDYIHRIGRTGRAGAKGTAITFFTTENSKQ-ARDLLGVLQEAKQE  499


 Score = 53.6 bits (127),  Expect = 4e-06, Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 49/129 (38%), Gaps = 11/129 (9%)

Query  14   ALEGKNIIIWLPTGAGKTRA----AAYVA--KRHLETVDGAKVVVLVNRVHLVTQHGEEF  67
            AL G++++    TG+GKT      A      +  L   DG  V++L     L  Q   E 
Sbjct  159  ALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLILAPTRELAVQIQAEI  218

Query  68   RRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS  126
             +     R   T + G +        L+R  ++ I T   L   L S +      L   +
Sbjct  219  SKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLESGKTN----LRRVT  274

Query  127  LIVVDECHH  135
             +V+DE   
Sbjct  275  YLVLDEADR  283


>sp|Q5L3G9|CSHA_GEOKA DEAD-box ATP-dependent RNA helicase CshA 
OS=Geobacillus kaustophilus (strain HTA426) OX=235909 GN=cshA 
PE=3 SV=1
Length=467

 Score = 126 bits (317),  Expect = 8e-30, Method: Composition-based stats.
 Identities = 64/363 (18%), Positives = 124/363 (34%), Gaps = 47/363 (13%)

Query  211  SQQPCKQYNLCHRRSQDPFGDLLKKLMDQIH--DHLEMPELSRKFGTQMYEQQVVKLSEA  268
             ++   + +        P  +L  ++ ++++    ++   +   +G Q  E+Q+  L + 
Sbjct  61   VEKVNVKNSAVQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALKKH  120

Query  269  AALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLL  328
              +      R+     R       +H  V           F        + +    + LL
Sbjct  121  PHVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPAERQTLL  180

Query  329  --ALFDDRKNELAHLATHGPENPKLE-------------------MLEKILQRQFSSSNS  367
              A   D    +A    + PE  K++                       IL R       
Sbjct  181  FSATMPDPIRRIAERFMNEPELVKVKAKEMTVPNIQQYYLEVHEKKKFDILTRLLDIQAP  240

Query  368  PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF  427
               I+F RT++    L   L               L G         ++Q  +  V++KF
Sbjct  241  ELAIVFGRTKRRVDELAEALN--------------LRGYAAEGIHGDLSQAKRLSVLRKF  286

Query  428  QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYA--FVAT  484
            ++G + +LVAT VA  GLDI     V  + +  +  S V   GR  RA ++  A  FV  
Sbjct  287  KEGAIEILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTP  346

Query  485  EGSRELK------RELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA  538
                +L       +  +       +++A+   Q++   +    + + +  +  KRAA+  
Sbjct  347  REIGQLHHIERTTKRKMERMKPPTLDEALEGQQRIAIEKLLNVV-ETENLSFYKRAAEEL  405

Query  539  QRE  541
              E
Sbjct  406  LEE  408


 Score = 45.6 bits (106),  Expect = 0.001, Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 48/129 (37%), Gaps = 6/129 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE  65
            Q + I  +L+ K++I    TG GKT A        +   + A + +V+     L  Q  E
Sbjct  29   QAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIVEKVNVKNSAVQALVVAPTRELAIQVSE  88

Query  66   EFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
            E  ++    R  V  + G          L +   +++ T   +   +        + L  
Sbjct  89   ELYKIGAVKRVRVLPIYGGQDIERQIRALKKHPHVIVGTPGRIIDHIN----RGTLRLEH  144

Query  125  FSLIVVDEC  133
               +V+DE 
Sbjct  145  VHTVVLDEA  153


>sp|Q2U070|DBP2_ASPOR ATP-dependent RNA helicase dbp2 OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=dbp2 
PE=3 SV=1
Length=554

 Score = 127 bits (320),  Expect = 8e-30, Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 80/207 (39%), Gaps = 19/207 (9%)

Query  297  VRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEK  356
             R     +A      R+  +       +  + ++     + +  +     +  K + + K
Sbjct  308  DRQTCMWSATWPKEVRQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIK  367

Query  357  ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT  416
             L++    +   + +IFT T++ A  +  +L+Q               G    S      
Sbjct  368  HLEKIME-NRGNKCLIFTGTKRIADEITRFLRQD--------------GWPALSIHGDKQ  412

Query  417  QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR---GRAR  473
            Q+++  V+ +F+ G   ++VAT VA  G+D+     V+ Y    N    V      GRA 
Sbjct  413  QQERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAG  472

Query  474  ADQSVYAFVATEGSRELKRELINEALE  500
            A  +   F  T+ S++  R+L+    E
Sbjct  473  AKGTAITFFTTDNSKQ-ARDLVTILTE  498


 Score = 51.3 bits (121),  Expect = 2e-05, Method: Composition-based stats.
 Identities = 32/129 (25%), Positives = 49/129 (38%), Gaps = 11/129 (9%)

Query  14   ALEGKNIIIWLPTGAGKTRA----AAYVA--KRHLETVDGAKVVVLVNRVHLVTQHGEEF  67
            AL G++++    TG+GKT +    A      +  L   DG  V+VL     L  Q   E 
Sbjct  164  ALSGRDVVGIAETGSGKTLSYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQAEI  223

Query  68   RRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS  126
             +     R   T + G +        L+R  ++ I T   L   L    E     L   +
Sbjct  224  TKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDML----EAGRTNLRRVT  279

Query  127  LIVVDECHH  135
             +V+DE   
Sbjct  280  YLVLDEADR  288


>sp|A0A1D6GDY8|RH3A_MAIZE DEAD-box ATP-dependent RNA helicase 
3A, chloroplastic OS=Zea mays OX=4577 GN=RH3A PE=3 SV=1
Length=745

 Score = 129 bits (323),  Expect = 9e-30, Method: Composition-based stats.
 Identities = 70/383 (18%), Positives = 140/383 (37%), Gaps = 44/383 (11%)

Query  166  LTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRS  225
            L A   TG    L   I  + QL    D       +     +   +++  KQ     + S
Sbjct  128  LIARAKTGTGKTLAFGIPMIKQLMEQDDGRSTRRGRTPRVLVLAPTRELAKQVEKEIKES  187

Query  226  QDPFGDL-------LKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQR  278
                G +            + +   +++   +      +     ++L E   L   +  +
Sbjct  188  APKLGTVCVYGGVSYNVQQNALSRGVDVVVGTPGRIIDLINGGSLQLGEVQYLVLDEADQ  247

Query  279  VYALHLRRYND-ALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNE  337
            + A+      +  L      R     +A    + ++   +         L+   D++  E
Sbjct  248  MLAVGFEEDVETILQQLPADRQSMLFSATMPSWVKKLSRRYLNNPLTIDLVGDQDEKLAE  307

Query  338  -LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTV  396
             +   A       K  +L  ++      +   + I+FTRT++ A  + L L       T 
Sbjct  308  GIKLHAIPLTATSKRTILSDLITVY---AKGGKTIVFTRTKKDADEVSLAL-------TT  357

Query  397  DIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY  456
             I ++ L G         ++Q  ++  +  F+ G   +LVAT VA  GLDIP+ ++++ Y
Sbjct  358  SIASEALHG--------DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY  409

Query  457  GLLTNEISMVQARGR-ARADQSVYAFVATEGSRE-----LKREL-----------INEAL  499
             L  +  + V   GR  RA ++  A +    S++     L+R++           I E L
Sbjct  410  ELPNDPETFVHRSGRTGRAGKAGTAILMFTSSQKRTVMSLERDVGCKFEFISPPSIEEVL  469

Query  500  ETLMEQAVAAVQKMDQAEYQAKI  522
            E+  E  +A ++ +     Q  +
Sbjct  470  ESSAEHVIATLRGVHPESTQYFL  492


 Score = 58.3 bits (139),  Expect = 2e-07, Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 57/136 (42%), Gaps = 14/136 (10%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGA--------KVVVLVNRV  57
            Q  V++PAL G+++I    TG GKT A    + K+ +E  DG         +V+VL    
Sbjct  115  QRAVLIPALGGRDLIARAKTGTGKTLAFGIPMIKQLMEQDDGRSTRRGRTPRVLVLAPTR  174

Query  58   HLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE  117
             L  Q  +E +       TV    G +        L+R  D+++ T   +   +      
Sbjct  175  ELAKQVEKEIKESAPKLGTVCVYGG-VSYNVQQNALSRGVDVVVGTPGRIIDLING----  229

Query  118  EHVELTVFSLIVVDEC  133
              ++L     +V+DE 
Sbjct  230  GSLQLGEVQYLVLDEA  245


>sp|P96614|CSHA_BACSU DEAD-box ATP-dependent RNA helicase CshA 
OS=Bacillus subtilis (strain 168) OX=224308 GN=cshA PE=1 SV=2
Length=494

 Score = 127 bits (318),  Expect = 9e-30, Method: Composition-based stats.
 Identities = 60/391 (15%), Positives = 122/391 (31%), Gaps = 57/391 (15%)

Query  168  ASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQD  227
            A+P       L  +   V+                   ++   S           R    
Sbjct  26   ATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVEKINPESPNIQAIVIAPTRELAI  85

Query  228  PFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQR----VYALH  283
               + L K+        +  ++   +G Q   +Q+  L +   +      R    +    
Sbjct  86   QVSEELYKI-----GQDKRAKVLPIYGGQDIGRQIRALKKNPNIIVGTPGRLLDHINRRT  140

Query  284  LRRYNDALLIHDTVRAVDALAALQDFY---------HREHVTKTQILCAERRLLALF---  331
            +R  N   ++ D    +  +  + D           H+  +    +    +R+   F   
Sbjct  141  IRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLLFSATMPAPIKRIAERFMTE  200

Query  332  ---------DDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHS  382
                     +   + +        E  K + L ++L  Q    +    I+F RT++    
Sbjct  201  PEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQ----SPELAIVFGRTKRRVDE  256

Query  383  LLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAE  442
            L   L               L G         +TQ  +   ++KF++G + +LVAT VA 
Sbjct  257  LAEALN--------------LRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVAA  302

Query  443  EGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVAT--------EGSRELKRE  493
             GLDI     V  + +  +  S V   GR  RA ++  A                +  + 
Sbjct  303  RGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQTTKR  362

Query  494  LINEALETLMEQAVAAVQKMDQAEYQAKIRD  524
             ++   E  +++A+   Q++     +  I +
Sbjct  363  KMDRMKEPTLDEALEGQQQVTVERLRTTISE  393


 Score = 51.3 bits (121),  Expect = 2e-05, Method: Composition-based stats.
 Identities = 27/129 (21%), Positives = 49/129 (38%), Gaps = 6/129 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q + I   L  K++I    TG GKT A    + ++        + +V+     L  Q  E
Sbjct  30   QAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVEKINPESPNIQAIVIAPTRELAIQVSE  89

Query  66   EFRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
            E  ++  D R  V  + G          L +  ++++ T   L   +        + L  
Sbjct  90   ELYKIGQDKRAKVLPIYGGQDIGRQIRALKKNPNIIVGTPGRLLDHINRRT----IRLNN  145

Query  125  FSLIVVDEC  133
             + +V+DE 
Sbjct  146  VNTVVMDEA  154


>sp|Q6GWX0|DDX4_PIG Probable ATP-dependent RNA helicase DDX4 OS=Sus 
scrofa OX=9823 GN=DDX4 PE=2 SV=1
Length=722

 Score = 128 bits (322),  Expect = 1e-29, Method: Composition-based stats.
 Identities = 53/296 (18%), Positives = 102/296 (34%), Gaps = 54/296 (18%)

Query  255  TQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDA-LLIHDTVRAVDALAALQDFYHRE  313
                 Q V   +   A  G     +    +       L++ +  R +D     +    ++
Sbjct  404  GHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEM---KK  460

Query  314  HVTKTQILCAERRLLALFD----DRKNELAHLATHGP-----------------------  346
             ++   +   E+R   +F     +    LA                              
Sbjct  461  LISCPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQADLQV  520

Query  347  -ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
             +  K E L +IL+         R ++F  T++ A  +  +L Q++              
Sbjct  521  GQYSKREKLLEILRNI----GDERTMVFVETKKKADFIATFLCQEK--------------  562

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM  465
               +S      QR++++ +  F+ G   +LVATSVA  GLDI +   V+ + L +     
Sbjct  563  ISTTSIHGDREQREREQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEY  622

Query  466  VQARGR-ARADQSVYA--FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEY  518
            V   GR  R   +  A  F   E    L + L+ + L    +   A ++++  + Y
Sbjct  623  VHRIGRTGRCGNTGRAISFFDLESDNHLAQPLV-KVLTDAQQDVPAWLEEIAFSTY  677


 Score = 51.7 bits (122),  Expect = 2e-05, Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 56/166 (34%), Gaps = 16/166 (10%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRH----------LETVDGAKVVVLVNRVHLVTQHG  64
            L G++++    TG+GKT A       H           + +   + +++     LV Q  
Sbjct  321  LAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIY  380

Query  65   EEFRRM-LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELT  123
             E R+           + G          + +  ++L  T   L   +   +    + L 
Sbjct  381  LEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEK----IGLK  436

Query  124  VFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS  169
                +V+DE      D  +   M + +      ++   Q L  +A+
Sbjct  437  QIKYLVLDEADR-MLDMGFGPEMKKLISCPGMPSKEQRQTLMFSAT  481


>sp|Q5AWA6|DBP3_EMENI ATP-dependent RNA helicase dbp3 OS=Emericella 
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 
194 / M139) OX=227321 GN=dbp3 PE=3 SV=2
Length=488

 Score = 126 bits (317),  Expect = 1e-29, Method: Composition-based stats.
 Identities = 42/208 (20%), Positives = 79/208 (38%), Gaps = 23/208 (11%)

Query  335  KNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQ  394
             + +  +      + K + L +IL R        + + F   ++ A  +   L+ +    
Sbjct  292  NSRIKQVVEVVKPHEKEQRLVQILNRH-QRGTPDKVLAFCLYKKEAMRVERLLRTK----  346

Query  395  TVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV  454
                      G   +     ++Q+++   ++ F+ G   +LVAT VA  GLDIPH  +VV
Sbjct  347  ----------GFKVAGIHGDLSQQERFRSLEAFKSGAATVLVATDVAARGLDIPHVKLVV  396

Query  455  RYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELI------NEALETLMEQA  506
                       V   GR  RA    +A  + TE  +     LI      N+ +   + + 
Sbjct  397  NVTFPLTVEDYVHRIGRTGRAGADGHAITLFTETDKAQSGALINVLKAANQEVPEALLKF  456

Query  507  VAAVQKMDQAEYQAKIRDLQQAALTKRA  534
             + V+K     Y A  +D++      + 
Sbjct  457  GSTVKKKQHDAYGAFFKDVEPGKAATKI  484


 Score = 46.7 bits (109),  Expect = 7e-04, Method: Composition-based stats.
 Identities = 24/127 (19%), Positives = 49/127 (39%), Gaps = 14/127 (11%)

Query  17   GKNIIIWLPTGAGKTRAAAYV--AKRHLETVDGAK-----VVVLVNRVHLVTQHGEEFRR  69
            G+++I    TG+GKT  A  +   K+ L+     K      VV+     L  Q  ++  +
Sbjct  110  GRDVIGIAETGSGKTL-AFGLPCLKKVLDLKTKQKSCRPLAVVISPTRELAMQIYDQLVK  168

Query  70   MLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLI  128
              +     V  + G +        L +   +++ T   L+      + +  ++L     +
Sbjct  169  FAEKVDIQVACIFGGVKKDEQREAL-KSAAVVVATPGRLKD----LQNDGSLDLGRVKYL  223

Query  129  VVDECHH  135
            V+DE   
Sbjct  224  VLDEADR  230


>sp|Q6C9P3|DBP3_YARLI ATP-dependent RNA helicase DBP3 OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DBP3 PE=3 
SV=1
Length=532

 Score = 127 bits (318),  Expect = 1e-29, Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 82/193 (42%), Gaps = 24/193 (12%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K   L  +L++   +++  + +IF   ++ A  +   L ++              G G +
Sbjct  353  KEGRLLDLLRQY--ANDDFKILIFALYKKEATRVENTLTRR--------------GYGVA  396

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
            +    ++Q+ + + + +F+ G  N+L+AT VA  GLDIP+  +V+           V   
Sbjct  397  AIHGDLSQQQRTKALDEFKKGEKNILLATDVAARGLDIPNVKLVINLTFPLTVEDYVHRI  456

Query  470  GR-ARADQSVYAF-VATEGSRELKRELIN------EALETLMEQAVAAVQKMDQAEYQAK  521
            GR  RA ++  A  + TE  + L   LIN      + +   + +     +K +   Y A 
Sbjct  457  GRTGRAGKTGQAITLFTEHEKHLSGALINVLRGADQPVPDELLKFGGHTKKKEHGAYGAF  516

Query  522  IRDLQQAALTKRA  534
             +D+      K+ 
Sbjct  517  FKDVDMTKKAKKI  529


 Score = 56.7 bits (135),  Expect = 5e-07, Method: Composition-based stats.
 Identities = 56/334 (17%), Positives = 115/334 (34%), Gaps = 21/334 (6%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK---VVVLVNRVHLVTQHGEEFRRML  71
            L GK+++    TG+GKT   A  A  H+ +  G K   V+V+     L  Q  +  + + 
Sbjct  159  LAGKDMVGVAETGSGKTFTFAVPALEHVLSTSGGKGVRVLVVSPTRELAMQIYDNIKELC  218

Query  72   D-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV  130
            D        + G +        L R   ++  T   L   +    +E   +L+  S +V+
Sbjct  219  DVVGLHAVCVYGGVPKEQQRSDLKRASFVI-ATPGRLCDLI----DEGSCDLSKVSYLVL  273

Query  131  DECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASK--LDGAINHVLQL  188
            DE     +      I       +    Q +  +   T  P     ++  +      ++  
Sbjct  274  DEADRMLEKGFEEDIKKIIGSTRPTGRQTV--MFSATWPPEVRKLAEGFMKTPTKVMIGE  331

Query  189  CANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPE  248
               L     ++      ++ +   +  +  +L  + + D F  L+  L  +    +E   
Sbjct  332  RDELAANKRIT---QSVEVLDPRAKEGRLLDLLRQYANDDFKILIFALYKKEATRVENTL  388

Query  249  LSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAA---  305
              R +G       + +     AL   ++     L         L    V+ V  L     
Sbjct  389  TRRGYGVAAIHGDLSQQQRTKALDEFKKGEKNILLATDVAARGLDIPNVKLVINLTFPLT  448

Query  306  LQDFYHREHVTKTQILCAERRLLALFDDRKNELA  339
            ++D+ HR  + +T       + + LF + +  L+
Sbjct  449  VEDYVHR--IGRTGRAGKTGQAITLFTEHEKHLS  480


>sp|A6RW56|RRP3_BOTFB ATP-dependent rRNA helicase rrp3 OS=Botryotinia 
fuckeliana (strain B05.10) OX=332648 GN=rrp3 PE=3 SV=1
Length=486

 Score = 126 bits (316),  Expect = 1e-29, Method: Composition-based stats.
 Identities = 50/206 (24%), Positives = 82/206 (40%), Gaps = 26/206 (13%)

Query  346  PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
            P   K   L  +L      S     IIFTRT      + + L+               +G
Sbjct  283  PLIHKDTYLIYLLNEFAGQS----AIIFTRTVNETQRIAILLRT--------------LG  324

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM  465
             G       ++Q  +   + KF+ G+  +LVAT VA  GLDIP  +VV+ Y +  +  + 
Sbjct  325  FGAIPLHGQLSQSSRLGALNKFRAGSREILVATDVAARGLDIPSVDVVLNYDVPQDSKTY  384

Query  466  VQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIR  523
            +   GR ARA +S +A  V T+   E     I   +E  + +       +       K R
Sbjct  385  IHRVGRTARAGKSGHAISVVTQYDLE-----IFMRIEAALGKKQVEYPTVKDEVMVFKPR  439

Query  524  DLQQAALTKRAAQAAQRENQRQQFPV  549
             +++A    R       E++ ++  V
Sbjct  440  -VEEAQRHARNEMKNLHEDRGKKGAV  464


 Score = 67.1 bits (162),  Expect = 2e-10, Method: Composition-based stats.
 Identities = 49/305 (16%), Positives = 111/305 (36%), Gaps = 19/305 (6%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHL---VTQ  62
            Q E I  AL+G+++I    TG+GKT A A  + +  L+       +VL     L   ++Q
Sbjct  87   QRESIPLALQGRDLIGLAETGSGKTAAFALPILQALLDKPQPLFGLVLAPTRELAYQISQ  146

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
              E    ++  +  V     DM P++    L +   +++ T   L   L + +      L
Sbjct  147  QFEALGSVIRVKCAVIVGGMDMVPQSI--ALGKKPHIIVATPGRLLDHLENTKG---FSL  201

Query  123  TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAI  182
                 +V+DE      D  +  I+ + L++  +  +        +A+  +   S    ++
Sbjct  202  RSLKYLVMDEADRLL-DLDFGPILDKILKVLPRERRTYL----FSATISSKVESLQRASL  256

Query  183  NHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHD  242
               L++  ++ +    +       +Q +   P    +       + F      +  +  +
Sbjct  257  KDPLRV--SISSNKYQTVS---TLIQNYIFIPLIHKDTYLIYLLNEFAGQSAIIFTRTVN  311

Query  243  HLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDA  302
              +   +  +           +LS+++ L  L + R  +  +    D       + +VD 
Sbjct  312  ETQRIAILLRTLGFGAIPLHGQLSQSSRLGALNKFRAGSREILVATDVAARGLDIPSVDV  371

Query  303  LAALQ  307
            +    
Sbjct  372  VLNYD  376


>sp|Q8W4R3|RH30_ARATH DEAD-box ATP-dependent RNA helicase 30 OS=Arabidopsis 
thaliana OX=3702 GN=RH30 PE=1 SV=2
Length=591

 Score = 127 bits (320),  Expect = 1e-29, Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 61/170 (36%), Gaps = 19/170 (11%)

Query  333  DRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQG  392
                 +  +    P   K   L  +L++    S   + +IF  T++    +   L+    
Sbjct  379  KANQSINQVIEIVPTPEKYNRLLTLLKQLMDGS---KILIFVETKRGCDQVTRQLR----  431

Query  393  LQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNV  452
                      + G    +     TQ ++  V+ +F+ G   ++ AT VA  GLD+     
Sbjct  432  ----------MDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVAARGLDVKDIKC  481

Query  453  VVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALE  500
            VV Y         +   GR  RA     AF   T  + +  REL+    E
Sbjct  482  VVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAKFARELVKILQE  531


 Score = 61.0 bits (146),  Expect = 2e-08, Method: Composition-based stats.
 Identities = 37/129 (29%), Positives = 53/129 (41%), Gaps = 11/129 (9%)

Query  14   ALEGKNIIIWLPTGAGKTRAAAYVAKRH------LETVDGAKVVVLVNRVHLVTQHGEEF  67
            AL+G+++I    TG+GKT A    A  H      L   DG  V++L     L  Q  EE 
Sbjct  199  ALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEES  258

Query  68   RRM-LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS  126
            R+  L      T + G          L R  +++I T   L   L    E +H  L   +
Sbjct  259  RKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDML----ECQHTNLKRVT  314

Query  127  LIVVDECHH  135
             +V+DE   
Sbjct  315  YLVLDEADR  323


>sp|Q1DP69|DBP2_COCIM ATP-dependent RNA helicase DBP2 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=DBP2 PE=3 SV=2
Length=545

 Score = 127 bits (318),  Expect = 1e-29, Method: Composition-based stats.
 Identities = 60/365 (16%), Positives = 119/365 (33%), Gaps = 51/365 (14%)

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQY-NLCHRRSQD  227
            +P       +  +   V+ +     T    +   C P +   + QP     +        
Sbjct  152  TPIQSQGWPMALSGRDVVGIAE---TGSGKTLTYCLPAIVHINAQPLLGPGDGPIVLVLA  208

Query  228  PFGDLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEAAALAGLQEQRVY-----  280
            P  +L  ++  +I    +   +     +G      Q+  LS    +      R+      
Sbjct  209  PTRELAVQIQAEITKFGKSSRIRNTCVYGGVPRGPQIRDLSRGVEVCIATPGRLIDMLEA  268

Query  281  -ALHLRRYNDALLIHDTVRAVDA---------------------LAALQDFYHREHVTKT  318
               +LRR    L++ +  R +D                       +A      R+     
Sbjct  269  GKTNLRR-VTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTCMWSATWPKEVRQLAHDF  327

Query  319  QILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQ  378
                 +  + +      + +  +     +  K + +   L+R        + +IFT T++
Sbjct  328  LHDYIQVYIGSQDLSANHRITQIVEIVSDFEKRDRMINHLERI-MDDKKSKILIFTGTKR  386

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT  438
             A  +  +L+Q               G    S      Q ++  V+ +F+ G   ++VAT
Sbjct  387  VADDITRFLRQD--------------GWPALSIHGDKQQNERDWVLNEFKTGKSPIMVAT  432

Query  439  SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELIN  496
             VA  G+D+     V+ Y    N    V   GR  RA     A  + T  + +  R+L+N
Sbjct  433  DVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITLFTTDNAKQARDLVN  492

Query  497  EALET  501
               E+
Sbjct  493  ILTES  497


 Score = 51.3 bits (121),  Expect = 2e-05, Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 49/129 (38%), Gaps = 11/129 (9%)

Query  14   ALEGKNIIIWLPTGAGKTRA----AAYVA--KRHLETVDGAKVVVLVNRVHLVTQHGEEF  67
            AL G++++    TG+GKT      A      +  L   DG  V+VL     L  Q   E 
Sbjct  162  ALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLGPGDGPIVLVLAPTRELAVQIQAEI  221

Query  68   RRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS  126
             +     R   T + G +        L+R  ++ I T   L   L + +      L   +
Sbjct  222  TKFGKSSRIRNTCVYGGVPRGPQIRDLSRGVEVCIATPGRLIDMLEAGKTN----LRRVT  277

Query  127  LIVVDECHH  135
             +V+DE   
Sbjct  278  YLVLDEADR  286


>sp|Q4R5S7|DDX4_MACFA Probable ATP-dependent RNA helicase DDX4 
OS=Macaca fascicularis OX=9541 GN=DDX4 PE=2 SV=1
Length=725

 Score = 128 bits (322),  Expect = 1e-29, Method: Composition-based stats.
 Identities = 52/296 (18%), Positives = 101/296 (34%), Gaps = 54/296 (18%)

Query  255  TQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDA-LLIHDTVRAVDALAALQDFYHRE  313
                 Q V   +   A  G     +    +       L++ +  R +D     +    ++
Sbjct  407  GHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEM---KK  463

Query  314  HVTKTQILCAERRLLALFDDRKNE----------------------------LAHLATHG  345
             ++   +   E+R   +F     E                            +       
Sbjct  464  LISCPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQV  523

Query  346  PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
             +  K E L +IL+         R ++F  T++ A  +  +L Q++              
Sbjct  524  GQFSKREKLVEILRNI----GDERTMVFVETKKKADFIATFLCQEK--------------  565

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM  465
               +S      QR++++ +  F+ G   +LVATSVA  GLDI +   V+ + L +     
Sbjct  566  ISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEY  625

Query  466  VQARGR-ARADQSVYA--FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEY  518
            V   GR  R   +  A  F   E    L + L+ + L    +   A ++++  + Y
Sbjct  626  VHRIGRTGRCGNTGRAISFFDLESDNHLAQPLV-KVLTDAQQDVPAWLEEIAFSTY  680


 Score = 51.7 bits (122),  Expect = 2e-05, Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 56/166 (34%), Gaps = 16/166 (10%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRH----------LETVDGAKVVVLVNRVHLVTQHG  64
            L G++++    TG+GKT A       H           + +   + +++     LV Q  
Sbjct  324  LAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASCFKELQEPECIIVAPTRELVNQIY  383

Query  65   EEFRRM-LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELT  123
             E R+           + G          + +  ++L  T   L   +   +    + L 
Sbjct  384  LEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEK----IGLK  439

Query  124  VFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS  169
                +V+DE      D  +   M + +      ++   Q L  +A+
Sbjct  440  QIKYLVLDEADR-MLDMGFGPEMKKLISCPGMPSKEQRQTLMFSAT  484


>sp|Q54VT4|DDX47_DICDI Probable ATP-dependent RNA helicase ddx47 
OS=Dictyostelium discoideum OX=44689 GN=ddx47 PE=3 SV=1
Length=546

 Score = 127 bits (318),  Expect = 2e-29, Method: Composition-based stats.
 Identities = 67/346 (19%), Positives = 125/346 (36%), Gaps = 49/346 (14%)

Query  228  PFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR  285
            P  +L  ++ DQ +       +      G      Q + L++   +      RV   HL 
Sbjct  195  PTRELAYQIADQFNAIGSTIGVKTCVLVGGIDSMSQSLALAKKPHVVVGSPGRV-LHHLE  253

Query  286  RYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFD----DRKNELAHL  341
                  L       +D    L      E V     +  + R   LF      +  +L   
Sbjct  254  HTKGFNLRSIKYFIMDEADRLFSADFEEEVNNILKVIPKERNTYLFSATMTSKVAKLQRA  313

Query  342  ATHGPEN----PKLEMLEKILQRQFSSSNSPR---------------GIIFTRTRQSAHS  382
            +   P       K + ++ +LQ+        +                IIFT T  S+  
Sbjct  314  SLVNPVKVQVASKYQTVDTLLQQYLFVPFKYKDCYLAYILNELAGNLTIIFTSTCASSTK  373

Query  383  LLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAE  442
            + + L+               +G G    +  M Q  +   + KF+ GT ++LVAT VA 
Sbjct  374  IAMMLRN--------------LGFGAIPINGDMDQGKRLASLNKFKQGTKSILVATDVAA  419

Query  443  EGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALE  500
             GLDIP  ++V+ Y + TN    V   GR ARA  S  A  + T+   E     + + +E
Sbjct  420  RGLDIPSVDLVINYDVPTNSKEYVHRVGRTARAGNSGRAITIVTQYDVE-----MYQRIE  474

Query  501  TLMEQAVAAVQKMDQAE--YQAKIRDLQQAALTKRAAQAAQRENQR  544
             ++++ + +    ++    +  ++++  + A  +   +     + R
Sbjct  475  FVLKKKLDSFPCQEETVLIFLERVQEAHRIATNELKDKNYSSSSDR  520


 Score = 58.3 bits (139),  Expect = 2e-07, Method: Composition-based stats.
 Identities = 60/389 (15%), Positives = 123/389 (32%), Gaps = 38/389 (10%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVV---LVNRVHLVTQH  63
            Q E I  AL+G++II    TG+GKT  AA+V     + ++  + +    L     L  Q 
Sbjct  146  QRESIPWALKGRDIIGLAQTGSGKT--AAFVIPVLQKLLEAPQGLFCLALAPTRELAYQI  203

Query  64   GEEFRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
             ++F  +          L G +   +    LA+   +++ +   +   L   +      L
Sbjct  204  ADQFNAIGSTIGVKTCVLVGGIDSMSQSLALAKKPHVVVGSPGRVLHHLEHTKG---FNL  260

Query  123  TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAI  182
                  ++DE            + +    +  +R   L      +A+  +  A     ++
Sbjct  261  RSIKYFIMDEADRLFSADFEEEVNNILKVIPKERNTYL-----FSATMTSKVAKLQRASL  315

Query  183  NHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHD  242
             + +++            Q     LQ++   P K  +       +     L  +      
Sbjct  316  VNPVKV------QVASKYQTVDTLLQQYLFVPFKYKDCYLAYILNELAGNLTIIFTSTCA  369

Query  243  -HLEMPELSRKFGTQMY-----EQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDT  296
               ++  + R  G           Q  +L+         +  + A  +      +   D 
Sbjct  370  SSTKIAMMLRNLGFGAIPINGDMDQGKRLASLNKFKQGTKSILVATDVAARGLDIPSVDL  429

Query  297  VRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEK  356
            V   D     +++ HR  V +T       R + +      E+           ++E + K
Sbjct  430  VINYDVPTNSKEYVHR--VGRTARAGNSGRAITIVTQYDVEM---------YQRIEFVLK  478

Query  357  ILQRQFSSSNSPRGIIFTRTRQSAHSLLL  385
                 F        +IF    Q AH +  
Sbjct  479  KKLDSFPCQEET-VLIFLERVQEAHRIAT  506


>sp|Q9C718|RH20_ARATH DEAD-box ATP-dependent RNA helicase 20 OS=Arabidopsis 
thaliana OX=3702 GN=RH20 PE=2 SV=1
Length=501

 Score = 126 bits (316),  Expect = 2e-29, Method: Composition-based stats.
 Identities = 56/316 (18%), Positives = 104/316 (33%), Gaps = 57/316 (18%)

Query  228  PFGDLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEAAALAGLQEQRVY-----  280
            P  +L  ++  +        ++     +G      QV  L +   +      R+      
Sbjct  180  PTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMMES  239

Query  281  -ALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELA  339
               +LRR    L++ +  R +D      D   R+ V+  +         A +     +L+
Sbjct  240  NNTNLRR-VTYLVLDEADRMLDMG---FDPQIRKIVSHIRPDRQTLYWSATWPKEVEQLS  295

Query  340  HLATHGP------------------------ENPKLEMLEKILQRQFSSSNSPRGIIFTR  375
                + P                        E+ K   L K+L+     S   R ++F  
Sbjct  296  KKFLYNPYKVIIGSSDLKANRAIRQIVDVISESQKYNKLVKLLEDIMDGS---RILVFLD  352

Query  376  TRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLL  435
            T++    +   L+              + G    S     +Q ++  V+ +F+ G   ++
Sbjct  353  TKKGCDQITRQLR--------------MDGWPALSIHGDKSQAERDWVLSEFRSGKSPIM  398

Query  436  VATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR---GRARADQSVYAFVATEGSRELKR  492
             AT VA  GLD+     V+ Y    +    V      GRA A  + Y F     +R   +
Sbjct  399  TATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVANAR-FAK  457

Query  493  ELINEALETLMEQAVA  508
            EL N   E   + +  
Sbjct  458  ELTNILQEAGQKVSPE  473


 Score = 57.1 bits (136),  Expect = 3e-07, Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 50/129 (39%), Gaps = 11/129 (9%)

Query  14   ALEGKNIIIWLPTGAGKTRAAAYVAKRH------LETVDGAKVVVLVNRVHLVTQ-HGEE  66
            A++G+++I    TG+GKT +    A  H      L   DG  V+VL     L  Q   E 
Sbjct  133  AMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEA  192

Query  67   FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS  126
             +     +   T + G +        L +  +++I T   L   + S        L   +
Sbjct  193  SKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMMESNNTN----LRRVT  248

Query  127  LIVVDECHH  135
             +V+DE   
Sbjct  249  YLVLDEADR  257


>sp|A1C6C4|DBP2_ASPCL ATP-dependent RNA helicase dbp2 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=dbp2 PE=3 SV=1
Length=549

 Score = 127 bits (318),  Expect = 2e-29, Method: Composition-based stats.
 Identities = 39/207 (19%), Positives = 81/207 (39%), Gaps = 19/207 (9%)

Query  297  VRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEK  356
             R     +A      R+  +       +  + ++     + +  +     +  K + + K
Sbjct  303  DRQTCMWSATWPKEVRQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIK  362

Query  357  ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT  416
             L++     ++ + +IFT T++ A  +  +L+Q               G    S      
Sbjct  363  HLEKIMEDRSN-KILIFTGTKRIADEITRFLRQD--------------GWPALSIHGDKQ  407

Query  417  QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR---GRAR  473
            Q+++  V+ +F+ G   ++VAT VA  G+D+     V+ Y    N    +      GRA 
Sbjct  408  QQERDWVLNEFKAGKSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYIHRIGRTGRAG  467

Query  474  ADQSVYAFVATEGSRELKRELINEALE  500
            A  +   F  T+ S++  R+L+    E
Sbjct  468  AKGTAITFFTTDNSKQ-ARDLVTILTE  493


 Score = 52.1 bits (123),  Expect = 1e-05, Method: Composition-based stats.
 Identities = 32/129 (25%), Positives = 48/129 (37%), Gaps = 11/129 (9%)

Query  14   ALEGKNIIIWLPTGAGKTRA----AAYVA--KRHLETVDGAKVVVLVNRVHLVTQHGEEF  67
            AL G++++    TG+GKT      A      +  L   DG  V+VL     L  Q   E 
Sbjct  159  ALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQTEI  218

Query  68   RRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS  126
             +     R   T + G +        L+R  ++ I T   L   L    E     L   +
Sbjct  219  TKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDML----EAGRTNLRRVT  274

Query  127  LIVVDECHH  135
             +V+DE   
Sbjct  275  YLVLDEADR  283


>sp|Q9NQI0|DDX4_HUMAN Probable ATP-dependent RNA helicase DDX4 
OS=Homo sapiens OX=9606 GN=DDX4 PE=1 SV=2
Length=724

 Score = 128 bits (321),  Expect = 2e-29, Method: Composition-based stats.
 Identities = 52/296 (18%), Positives = 101/296 (34%), Gaps = 54/296 (18%)

Query  255  TQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDA-LLIHDTVRAVDALAALQDFYHRE  313
                 Q V   +   A  G     +    +       L++ +  R +D     +    ++
Sbjct  406  GHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEM---KK  462

Query  314  HVTKTQILCAERRLLALFDDRKNE----------------------------LAHLATHG  345
             ++   +   E+R   +F     E                            +       
Sbjct  463  LISCPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQV  522

Query  346  PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
             +  K E L +IL+         R ++F  T++ A  +  +L Q++              
Sbjct  523  GQFSKREKLVEILRNI----GDERTMVFVETKKKADFIATFLCQEK--------------  564

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM  465
               +S      QR++++ +  F+ G   +LVATSVA  GLDI +   V+ + L +     
Sbjct  565  ISTTSIHGDREQREREQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEY  624

Query  466  VQARGR-ARADQSVYA--FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEY  518
            V   GR  R   +  A  F   E    L + L+ + L    +   A ++++  + Y
Sbjct  625  VHRIGRTGRCGNTGRAISFFDLESDNHLAQPLV-KVLTDAQQDVPAWLEEIAFSTY  679


 Score = 51.7 bits (122),  Expect = 2e-05, Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 56/166 (34%), Gaps = 16/166 (10%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRH----------LETVDGAKVVVLVNRVHLVTQHG  64
            L G++++    TG+GKT A       H           + +   + +++     LV Q  
Sbjct  323  LAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIY  382

Query  65   EEFRRM-LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELT  123
             E R+           + G          + +  ++L  T   L   +   +    + L 
Sbjct  383  LEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEK----IGLK  438

Query  124  VFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS  169
                +V+DE      D  +   M + +      ++   Q L  +A+
Sbjct  439  QIKYLVLDEADR-MLDMGFGPEMKKLISCPGMPSKEQRQTLMFSAT  483


>sp|A2QC74|DBP2_ASPNC ATP-dependent RNA helicase dbp2 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=dbp2 PE=3 SV=1
Length=565

 Score = 127 bits (318),  Expect = 2e-29, Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 81/207 (39%), Gaps = 19/207 (9%)

Query  297  VRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEK  356
             R     +A      R+  +       +  + ++     + +  +     +  K + + K
Sbjct  315  DRQTCMWSATWPKEVRQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIK  374

Query  357  ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT  416
             L++    + + + +IFT T++ A  +  +L+Q               G    S      
Sbjct  375  HLEKIME-NRANKCLIFTGTKRIADEITRFLRQD--------------GWPALSIHGDKQ  419

Query  417  QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR---GRAR  473
            Q+++  V+ +F+ G   ++VAT VA  G+D+     V+ Y    N    V      GRA 
Sbjct  420  QQERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAG  479

Query  474  ADQSVYAFVATEGSRELKRELINEALE  500
            A  +   F  T+ S++  R+L+    E
Sbjct  480  AKGTAITFFTTDNSKQ-ARDLVTILTE  505


 Score = 53.3 bits (126),  Expect = 6e-06, Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 48/129 (37%), Gaps = 11/129 (9%)

Query  14   ALEGKNIIIWLPTGAGKTRA----AAYVA--KRHLETVDGAKVVVLVNRVHLVTQHGEEF  67
            AL G++++    TG+GKT      A      +  L   DG  V++L     L  Q   E 
Sbjct  171  ALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLILAPTRELAVQIQAEI  230

Query  68   RRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS  126
             +     R   T + G +        L+R  ++ I T   L   L    E     L   +
Sbjct  231  SKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDML----EAGRTNLRRVT  286

Query  127  LIVVDECHH  135
             +V+DE   
Sbjct  287  YLVLDEADR  295


>sp|Q6FQZ0|DBP8_CANGA ATP-dependent RNA helicase DBP8 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DBP8 PE=3 SV=1
Length=437

 Score = 125 bits (313),  Expect = 2e-29, Method: Composition-based stats.
 Identities = 50/212 (24%), Positives = 92/212 (43%), Gaps = 26/212 (12%)

Query  346  PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
            PE+ K   L ++L     S  +   IIF     +A  L   L+       +D+R   L  
Sbjct  242  PEHVKEAYLYQLLTC--ESYANSTAIIFVNRTTAAEVLRRTLK------ALDVRVASL--  291

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM  465
                   + M Q+++   + +F+     +L+AT VA  GLDIP   +V+ Y + ++  + 
Sbjct  292  ------HSQMPQQERTNSMHRFRANAARVLIATDVASRGLDIPTVELVINYDIPSDPDTF  345

Query  466  VQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD  524
            +   GR ARA +   A       R++ R      +E +  +    + + D+    A IR 
Sbjct  346  IHRSGRTARAGRKGDAISFITQ-RDVSR------IEAIEARINMKMTECDKVHDTAVIRK  398

Query  525  -LQQAALTKRAA-QAAQRENQRQQFPVEHVQL  554
             L + +  KR A  A ++EN  ++  ++  + 
Sbjct  399  ALTKVSKAKREALMAMEKENFGERRKLQKRKT  430


 Score = 49.4 bits (116),  Expect = 8e-05, Method: Composition-based stats.
 Identities = 26/124 (21%), Positives = 45/124 (36%), Gaps = 8/124 (6%)

Query  15   LEGKNIIIWLPTGAGKTRAAAY--VAKRHLETVDGAKVVVLVNRVHLVTQ---HGEEFRR  69
            L+G++ I    TG+GKT  A    +  +  E   G   +VL     L  Q          
Sbjct  44   LKGRDCIGGAKTGSGKT-IAFAGPMLTQWSEDPTGMFGIVLTPTRELAMQIAEQFTALGS  102

Query  70   MLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIV  129
             ++ R  +      +  +A    L R    +I T   L   + +  ++    L     +V
Sbjct  103  YMNIRVALVVGGESIVDQAL--QLQRKPHFIIATPGRLAHHILNSGDDTVGGLKRVKYLV  160

Query  130  VDEC  133
            +DE 
Sbjct  161  LDEA  164


>sp|Q8H136|RH14_ARATH DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis 
thaliana OX=3702 GN=RH14 PE=1 SV=2
Length=619

 Score = 127 bits (319),  Expect = 2e-29, Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 68/166 (41%), Gaps = 21/166 (13%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K   LE+IL+ Q       + IIF  T++    L   L +Q                G +
Sbjct  389  KQRRLEQILRSQ---EPGSKVIIFCSTKRMCDQLTRNLTRQ---------------FGAA  430

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
            +     +Q ++  V+ +F+ G   +LVAT VA  GLD+     VV Y         V   
Sbjct  431  AIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRI  490

Query  470  GR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKM  513
            GR  RA  +  AF    +   +   +LI + LE   ++    +++M
Sbjct  491  GRTGRAGATGQAFTFFGDQDSKHASDLI-KILEGANQRVPPQIREM  535


 Score = 62.1 bits (149),  Expect = 1e-08, Method: Composition-based stats.
 Identities = 66/336 (20%), Positives = 101/336 (30%), Gaps = 27/336 (8%)

Query  14   ALEGKNIIIWLPTGAGKT-------RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ-HGE  65
            A++G++I+    TG+GKT              +          ++VL     L TQ   E
Sbjct  192  AMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPT--ILVLSPTRELATQIQEE  249

Query  66   EFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF  125
              +     R + T L G          L R  D+++ T   L   L    E   + L   
Sbjct  250  AVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDIL----EMRRISLRQI  305

Query  126  SLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS-PGTGGASKLDGAINH  184
            S +V+DE            I     E+  +R     Q L  TA+ P        D  +N 
Sbjct  306  SYLVLDEADRMLDMGFEPQIRKIVKEIPTKR-----QTLMYTATWPKGVRKIAADLLVNP  360

Query  185  VLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHL  244
                  N+D            Q  E      KQ  L         G  +           
Sbjct  361  AQVNIGNVDELV---ANKSITQHIEVVAPMEKQRRLEQILRSQEPGSKVIIFCSTKRMCD  417

Query  245  EMP-ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV---  300
            ++   L+R+FG         +      L   +  R   L         L    +RAV   
Sbjct  418  QLTRNLTRQFGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNY  477

Query  301  DALAALQDFYHREHVTKTQILCAERRLLALFDDRKN  336
            D    ++D+ HR   T       +        D K+
Sbjct  478  DFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKH  513


>sp|P34580|DDX47_CAEEL Putative ATP-dependent RNA helicase T26G10.1 
OS=Caenorhabditis elegans OX=6239 GN=T26G10.1 PE=3 SV=1
Length=489

 Score = 126 bits (315),  Expect = 2e-29, Method: Composition-based stats.
 Identities = 46/234 (20%), Positives = 84/234 (36%), Gaps = 26/234 (11%)

Query  313  EHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGII  372
              + +  +    R  ++      + L       P   K   L  +L     +S     I+
Sbjct  233  SKLERASLRDPARVSVSSRYKTVDNLKQHYIFVPNKYKETYLVYLLNEHAGNS----AIV  288

Query  373  FTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTL  432
            F  T  +   + + L+Q              +G         M+Q  +   + KF+    
Sbjct  289  FCATCATTMQIAVMLRQ--------------LGMQAVPLHGQMSQEKRLGSLNKFKSKAR  334

Query  433  NLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSREL  490
             +LV T VA  GLDIPH ++V+ Y + +     V   GR ARA +S  A  V T+   E 
Sbjct  335  EILVCTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGIAITVVTQYDVE-  393

Query  491  KRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQR  544
                  + +E  + + +   + ++       +   Q+A    R       E ++
Sbjct  394  ----AYQKIEANLGKKLDEYKCVENEVMV-LVERTQEATENARIEMKEMDEKKK  442


 Score = 59.0 bits (141),  Expect = 8e-08, Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 50/133 (38%), Gaps = 9/133 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT-RAAAYVAKRHLETVDGAKVVVLVNRVHLVT---Q  62
            Q   +  AL+GK++I    TG+GKT   A  V +  L+       +VL     L     Q
Sbjct  71   QQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQSLLDHPQAFFCLVLTPTRELAFQIGQ  130

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
              E     +     V     DM  +A    LAR   +++ T   L   L + +      L
Sbjct  131  QFEALGSGIGLIAAVIVGGVDMAAQAM--ALARRPHIIVATPGRLVDHLENTKG---FNL  185

Query  123  TVFSLIVVDECHH  135
                 +++DE   
Sbjct  186  KALKFLIMDEADR  198


>sp|Q8L7S8|RH3_ARATH DEAD-box ATP-dependent RNA helicase 3, chloroplastic 
OS=Arabidopsis thaliana OX=3702 GN=RH3 PE=1 SV=2
Length=748

 Score = 127 bits (320),  Expect = 2e-29, Method: Composition-based stats.
 Identities = 62/335 (19%), Positives = 127/335 (38%), Gaps = 37/335 (11%)

Query  206  QLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKL  265
            +L +  ++  K+            G         +   +++   +      + E + +KL
Sbjct  191  ELAKQVEKEIKESAPYLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIEGRSLKL  250

Query  266  SEAAALAGLQEQRVYALHLRRYNDALLIH-DTVRAVDALAALQDFYHREHVTKTQILCAE  324
             E   L   +  ++ A+      +++L +  T R     +A    + ++   K       
Sbjct  251  GEVEYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDNPLN  310

Query  325  RRLLALFDDRKNE-LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSL  383
              L+   D++  E +   A       K  +L  ++      +   + I+FT+T++ A  +
Sbjct  311  IDLVGDQDEKLAEGIKLYAIATTSTSKRTILSDLITVY---AKGGKTIVFTQTKRDADEV  367

Query  384  LLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEE  443
             L L          I  + L G         ++Q  ++  +  F+ G   +LVAT VA  
Sbjct  368  SLALSN-------SIATEALHG--------DISQHQRERTLNAFRQGKFTVLVATDVASR  412

Query  444  GLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGS-----RELKREL---  494
            GLDIP+ ++V+ Y L  +  + V   GR  RA +   A +    S     R L+R++   
Sbjct  413  GLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLERDVGCH  472

Query  495  --------INEALETLMEQAVAAVQKMDQAEYQAK  521
                    + + LE+  +Q VA +  +     +  
Sbjct  473  FEFISPPTVGDLLESSADQVVATLNGVHPDSIKFF  507


 Score = 55.6 bits (132),  Expect = 1e-06, Method: Composition-based stats.
 Identities = 34/138 (25%), Positives = 54/138 (39%), Gaps = 16/138 (12%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLET------VDGA----KVVVLVN  55
            Q  V++PAL+G++II    TG GKT A    + KR  E          +    K +VL  
Sbjct  129  QRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAP  188

Query  56   RVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE  115
               L  Q  +E +       TV    G +        L R  D+++ T   +   +    
Sbjct  189  TRELAKQVEKEIKESAPYLSTVCVYGG-VSYTIQQSALTRGVDVVVGTPGRIIDLIEGRS  247

Query  116  EEEHVELTVFSLIVVDEC  133
                ++L     +V+DE 
Sbjct  248  ----LKLGEVEYLVLDEA  261


>sp|Q5APT8|DBP3_CANAL ATP-dependent RNA helicase DBP3 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DBP3 
PE=3 SV=1
Length=564

 Score = 126 bits (317),  Expect = 3e-29, Method: Composition-based stats.
 Identities = 43/213 (20%), Positives = 82/213 (38%), Gaps = 25/213 (12%)

Query  333  DRKNELAHLATHGPENPKLEMLEKILQRQ-FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQ  391
                 +  +     +  K + L ++L++   + S+  + +IF   ++ A  +  +L++ +
Sbjct  365  SANKRITQVVEVINKFDKEKKLIQLLRKYNANESSDNKILIFALYKKEASRIENFLKRNR  424

Query  392  GLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN  451
                             ++    ++Q+ +   +  F+ G  NLL+AT VA  GLDIP+  
Sbjct  425  --------------FSVAAIHGDLSQQQRTAALSAFKSGQSNLLLATDVAARGLDIPNVK  470

Query  452  VVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELIN-------EALETL  502
            VV+           V   GR  RA     A  + TE  + L   L N          E L
Sbjct  471  VVINLTFPLTIEDYVHRIGRTGRAGAKGTAHTLFTEDEKHLSGALCNILRGANQPVPEEL  530

Query  503  MEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAA  535
            ++      +K   + Y A  +D+      K+  
Sbjct  531  LKFGGHT-KKKAHSVYGAFYKDVDMTKTAKKIK  562


 Score = 50.6 bits (119),  Expect = 4e-05, Method: Composition-based stats.
 Identities = 54/336 (16%), Positives = 104/336 (31%), Gaps = 22/336 (7%)

Query  15   LEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLV--NRVHLVTQHGEE-FRRM  70
            L GK++I    TG+GKT A         + T +   + VL       L  Q  +      
Sbjct  188  LSGKDVIGVAETGSGKTFAFGVPAINNIITTGNTKTLSVLCISPTRELALQIYDNLIELT  247

Query  71   LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV  130
             D       + G +          +  ++++ T   L   +        + L   + +V+
Sbjct  248  ADSGVNCVAVYGGVSKD-DQIRKIKTANVVVATPGRLVDLIND----GAINLGKVNYLVL  302

Query  131  DECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS-PGTGGASKLDGAINHVLQLC  189
            DE     +      I +          Q     L  TA+ P        +   + V    
Sbjct  303  DEADRMLEKGFEEDIKTIISNTSNSERQT----LMFTATWPKEVRELANNFMNSPVKVTV  358

Query  190  ANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGD---LLKKLMDQIHDHLEM  246
             + D            ++     +  K   L  + + +   D   L+  L  +    +E 
Sbjct  359  GDRDELSANKRITQVVEVINKFDKEKKLIQLLRKYNANESSDNKILIFALYKKEASRIEN  418

Query  247  PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAA-  305
                 +F        + +    AAL+  +  +   L         L    V+ V  L   
Sbjct  419  FLKRNRFSVAAIHGDLSQQQRTAALSAFKSGQSNLLLATDVAARGLDIPNVKVVINLTFP  478

Query  306  --LQDFYHREHVTKTQILCAERRLLALFDDRKNELA  339
              ++D+ HR  + +T    A+     LF + +  L+
Sbjct  479  LTIEDYVHR--IGRTGRAGAKGTAHTLFTEDEKHLS  512


>sp|P24782|DBP2_SCHPO ATP-dependent RNA helicase dbp2 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=dbp2 
PE=2 SV=2
Length=550

 Score = 126 bits (316),  Expect = 3e-29, Method: Composition-based stats.
 Identities = 64/375 (17%), Positives = 126/375 (34%), Gaps = 54/375 (14%)

Query  164  LGLTA-SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQY-NLC  221
            LG  A +P    A  +  +   ++ + A   T    +   C P +   + QP     +  
Sbjct  140  LGFEAPTPIQQQAWPMAMSGRDMVGISA---TGSGKTLSYCLPAIVHINAQPLLSPGDGP  196

Query  222  HRRSQDPFGDLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEAAALAGLQEQRV  279
                  P  +L  ++  +     +   +     +G      Q+  L     +      R+
Sbjct  197  IVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVEICIATPGRL  256

Query  280  ------YALHLRRYNDALLIHDTVRAVD---------ALAALQDFYHREHVTKTQILCAE  324
                     +LRR    L++ +  R +D          +  ++        + T     +
Sbjct  257  LDMLDSNKTNLRR-VTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTVMFSATWPKEVQ  315

Query  325  R----RLLALFDDRKNELAHLATHG--------PENPKLEMLEKILQRQFSSSNSPRGII  372
            R     L          L   A+H             K   L K ++      ++ + +I
Sbjct  316  RLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRARLGKDIEEVLKDRDN-KVLI  374

Query  373  FTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTL  432
            FT T++ A  +  +L+Q               G    +      Q ++  V+ +F+ G  
Sbjct  375  FTGTKRVADDITRFLRQD--------------GWPALAIHGDKAQDERDWVLNEFRTGKS  420

Query  433  NLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR---GRARADQSVYAFVATEGSRE  489
             ++VAT VA  G+D+     V  Y    N    V      GRA A  + Y +  ++ +++
Sbjct  421  PIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNAKQ  480

Query  490  LKRELINEALETLME  504
              REL++   E   +
Sbjct  481  -ARELVSILSEAKQD  494


 Score = 49.8 bits (117),  Expect = 7e-05, Method: Composition-based stats.
 Identities = 32/136 (24%), Positives = 52/136 (38%), Gaps = 11/136 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA----AAYVA--KRHLETVDGAKVVVLVNRVHLV  60
            Q +    A+ G++++    TG+GKT +    A      +  L   DG  V+VL     L 
Sbjct  149  QQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELA  208

Query  61   TQHGEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
             Q  +E  +     R   T + G +        L R  ++ I T   L   L S +    
Sbjct  209  VQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVEICIATPGRLLDMLDSNKTN--  266

Query  120  VELTVFSLIVVDECHH  135
              L   + +V+DE   
Sbjct  267  --LRRVTYLVLDEADR  280


>sp|Q6BY27|DBP2_DEBHA ATP-dependent RNA helicase DBP2 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / 
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DBP2 PE=3 SV=1
Length=536

 Score = 126 bits (316),  Expect = 3e-29, Method: Composition-based stats.
 Identities = 60/365 (16%), Positives = 119/365 (33%), Gaps = 55/365 (15%)

Query  194  TWCIMSPQNCCPQLQEHSQQPCKQY-NLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRK  252
            T    +   C P +   + QP     +        P  +L  ++  +         +   
Sbjct  151  TGSGKTLSYCLPSIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECSKFGSSSRIRNT  210

Query  253  --FGTQMYEQQVVKLSEAAALAGLQEQRVY------ALHLRRYNDALLIHDTVRAVDALA  304
              +G     QQ+  L+    +      R+         +LRR    L++ +  R +D   
Sbjct  211  CVYGGAPKGQQIRDLARGVEICIATPGRLIDMLETGKTNLRR-VTYLVLDEADRMLDMGF  269

Query  305  ALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGP------------------  346
              Q    R+ V + +         A +      L     + P                  
Sbjct  270  EPQ---IRKIVDQIRPDRQTLMWSATWPKEVQALTRDYLNDPIQVTVGSLELAASHTITQ  326

Query  347  ------ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRA  400
                  E  K + L K L    ++    + +IF  T+++   +  +L+            
Sbjct  327  LVEVVTEFEKRDRLIKHL-ETATADPEAKCLIFASTKRTCDEITNYLRAD----------  375

Query  401  QLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT  460
                G    +      Q ++  V+++F+ G   ++VAT VA  G+D+   + V+   +  
Sbjct  376  ----GWPALAIHGDKQQGERDWVLKEFKTGKSPIMVATDVAARGIDVKGISYVINLDMPG  431

Query  461  NEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEY  518
            N    V   GR  RA  +  A    T+ + +L  +L     E         + + D+  +
Sbjct  432  NIEDYVHRIGRTGRAGSTGTAVSFFTDNNSKLGGDLCKIMREANQ-TIPPELMRFDRRSF  490

Query  519  QAKIR  523
             + IR
Sbjct  491  GSHIR  495


 Score = 56.0 bits (133),  Expect = 7e-07, Method: Composition-based stats.
 Identities = 63/347 (18%), Positives = 119/347 (34%), Gaps = 44/347 (13%)

Query  14   ALEGKNIIIWLPTGAGKTR------AAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEF  67
            AL G++++    TG+GKT            A+  L   DG  V+VL     L  Q  +E 
Sbjct  139  ALSGRDMVGIASTGSGKTLSYCLPSIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQEC  198

Query  68   RRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS  126
             +     R   T + G          LAR  ++ I T   L   L    E     L   +
Sbjct  199  SKFGSSSRIRNTCVYGGAPKGQQIRDLARGVEICIATPGRLIDML----ETGKTNLRRVT  254

Query  127  LIVVDECHHTHKDTVYNVIMSQYLELKLQR----AQPLPQVLGLTAS-PGTGGASKLDGA  181
             +V+DE          + ++    E ++++     +P  Q L  +A+ P    A   D  
Sbjct  255  YLVLDEA---------DRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVQALTRDYL  305

Query  182  INHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIH  241
             + +     +L+     +       + E  ++     +L    +      L+     +  
Sbjct  306  NDPIQVTVGSLELAASHTITQLVEVVTEFEKRDRLIKHLETATADPEAKCLIFASTKRTC  365

Query  242  DHLEMPELSRKFGT----------QMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDAL  291
            D  E+    R  G           Q     V+K  +      +    V A  +     + 
Sbjct  366  D--EITNYLRADGWPALAIHGDKQQGERDWVLKEFKTGKSPIMVATDVAARGIDVKGISY  423

Query  292  LIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNEL  338
            +I+     +D    ++D+ HR  + +T    +    ++ F D  ++L
Sbjct  424  VIN-----LDMPGNIEDYVHR--IGRTGRAGSTGTAVSFFTDNNSKL  463


>sp|Q9LYJ9|RH46_ARATH DEAD-box ATP-dependent RNA helicase 46 OS=Arabidopsis 
thaliana OX=3702 GN=RH46 PE=2 SV=2
Length=645

 Score = 127 bits (318),  Expect = 3e-29, Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 69/166 (42%), Gaps = 21/166 (13%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K   LE+IL+ Q       + IIF  T++    L   L +                 G +
Sbjct  392  KHSRLEQILRSQ---EPGSKIIIFCSTKRMCDQLARNLTRT---------------FGAA  433

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
            +     +Q ++ +V+ +F+ G   +LVAT VA  GLD+    VVV Y         V   
Sbjct  434  AIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYDFPNGVEDYVHRI  493

Query  470  GR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKM  513
            GR  RA  +  A+    +   +   +LI + LE   ++    V++M
Sbjct  494  GRTGRAGATGLAYTFFGDQDAKHASDLI-KILEGANQKVPPQVREM  538


 Score = 61.4 bits (147),  Expect = 2e-08, Method: Composition-based stats.
 Identities = 60/350 (17%), Positives = 103/350 (29%), Gaps = 25/350 (7%)

Query  14   ALEGKNIIIWLPTGAGKT-------RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ-HGE  65
            A++ ++I+    TG+GKT                         ++VL     L TQ   E
Sbjct  195  AMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPT--ILVLSPTRELATQIQVE  252

Query  66   EFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF  125
              +     + +   L G          + R  D+++ T   L   L        + L   
Sbjct  253  ALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGRLNDILEMKR----ISLHQV  308

Query  126  SLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS-PGTGGASKLDGAINH  184
            S +V+DE            I     E+  +R     Q L  TA+ P        D  +N 
Sbjct  309  SYLVLDEADRMLDMGFEPQIRKIVNEVPTKR-----QTLMYTATWPKEVRKIAADLLVNP  363

Query  185  VLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHL  244
                  N+D            ++    ++  +   +   RSQ+P   ++     +     
Sbjct  364  AQVNIGNVDELVANKSITQTIEVLAPMEKHSRLEQI--LRSQEPGSKIIIFCSTKRMCDQ  421

Query  245  EMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV---D  301
                L+R FG         +      L   +  R   L         L    +R V   D
Sbjct  422  LARNLTRTFGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYD  481

Query  302  ALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKL  351
                ++D+ HR   T                D K+    +      N K+
Sbjct  482  FPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASDLIKILEGANQKV  531


>sp|Q5QMN3|RH20_ORYSJ DEAD-box ATP-dependent RNA helicase 20 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os01g0197200 PE=3 
SV=2
Length=494

 Score = 125 bits (314),  Expect = 3e-29, Method: Composition-based stats.
 Identities = 54/289 (19%), Positives = 96/289 (33%), Gaps = 55/289 (19%)

Query  253  FGTQMYEQQVVKLSEAAALAGLQEQRVYA------LHLRRYNDALLIHDTVRAVDALAAL  306
            +G      QV  L +   +      R+         +LRR    L++ +  R +D     
Sbjct  199  YGGVPKGPQVRDLQKGVEIVIATPGRLIDMIESHHTNLRR-VTYLVLDEADRMLDMGFEP  257

Query  307  QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGP--------------------  346
            Q    ++ V++ +         A +     +LA      P                    
Sbjct  258  Q---IKKIVSQIRPDRQTLYWSATWPKEVEQLARNFLFDPYKVIIGSEELKANHAISQHV  314

Query  347  ----ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL  402
                E+ K   L  +L+     S   R +IF  T++    +   L+              
Sbjct  315  EILSESQKYNKLVNLLEDIMDGS---RILIFMDTKKGCDQITRQLR--------------  357

Query  403  LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE  462
            + G    S     +Q ++  V+ +F+ G   ++ AT VA  GLD+     V+ Y    + 
Sbjct  358  MDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSL  417

Query  463  ISMVQAR---GRARADQSVYAFVATEGSRELKRELINEALETLMEQAVA  508
               V      GRA A  + Y F     +R   ++LIN   E   + +  
Sbjct  418  EDYVHRIGRTGRAGAKGTAYTFFTAANAR-FAKDLINILEEAGQKVSPE  465


 Score = 57.5 bits (137),  Expect = 3e-07, Method: Composition-based stats.
 Identities = 33/129 (26%), Positives = 50/129 (39%), Gaps = 11/129 (9%)

Query  14   ALEGKNIIIWLPTGAGKTRAAAYVAKRH------LETVDGAKVVVLVNRVHLVTQ-HGEE  66
            AL G+++I    TG+GKT A    A  H      L   DG  V+VL     L  Q   E 
Sbjct  125  ALRGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILAPGDGPIVLVLAPTRELAVQIQQEA  184

Query  67   FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS  126
             +     +   T + G +        L +  +++I T   L   +    E  H  L   +
Sbjct  185  TKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMI----ESHHTNLRRVT  240

Query  127  LIVVDECHH  135
             +V+DE   
Sbjct  241  YLVLDEADR  249


>sp|Q814I2|DBPA_BACCR ATP-dependent RNA helicase DbpA OS=Bacillus 
cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 
/ NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711) OX=226900 
GN=dbpA PE=2 SV=1
Length=481

 Score = 125 bits (313),  Expect = 3e-29, Method: Composition-based stats.
 Identities = 71/416 (17%), Positives = 137/416 (33%), Gaps = 35/416 (8%)

Query  165  GLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRR  224
            G TAS G      ++   N    L         +  +     +        K+       
Sbjct  53   GKTASFGIPLCEMVEWEENKPQALVLTPTRELAVQVKEDITNIGRF-----KRIKAAAVY  107

Query  225  SQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHL  284
             + PF     +L  + H  +  P           E+  + L     L   +   +  +  
Sbjct  108  GKSPFARQKLELKQKTHIVVGTPGRV----LDHIEKGTLSLECLKYLVIDEADEMLNMGF  163

Query  285  RRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATH  344
                +A++     + +  L +       E +++T +       +       +++ H    
Sbjct  164  IDQVEAIIDELPTKRMTMLFSATLPEDVEKLSRTYMNSPTHIEIKAAGITTDKIEHTLFE  223

Query  345  GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI  404
              E+ KL +L+ +     +  N    IIF RT+++   +   L++       +     + 
Sbjct  224  VIEDEKLSLLKDVT----TIENPDSCIIFCRTQENVDHVYRQLKR------ANYPCDKIH  273

Query  405  GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
            G         M Q D+ EV+  F+ G    LVAT VA  G+DI +   V+ Y +   + S
Sbjct  274  G--------GMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPLEKES  325

Query  465  MVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIR  523
             V   GR  RA  S  A            E I E +   + +A+   ++    E  A   
Sbjct  326  YVHRTGRTGRAGNSGKAITFITPYENRFLEEIEEYIGFEIPKAIGPSKEEVMKEKAAFEE  385

Query  524  DLQQAALTKRAAQAAQRE-------NQRQQFPVEHVQLLCINCMVAVGHGSDLRKV  572
             L    + K+   A   +       N  ++  +  V  +     +      D+  +
Sbjct  386  KLHAKPIIKKDKNADINKGIMKLYFNGGKKKKIRAVDFVGTIAKIKGVTAEDIGII  441


 Score = 54.8 bits (130),  Expect = 2e-06, Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 51/129 (40%), Gaps = 6/129 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE  65
            Q EVI  AL+ K++++   TG+GKT +        +E  +   + +VL     L  Q  E
Sbjct  31   QGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENKPQALVLTPTRELAVQVKE  90

Query  66   EFRRMLDGRW-TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
            +   +   +      + G          L +   +++ T   +   +    E+  + L  
Sbjct  91   DITNIGRFKRIKAAAVYGKSPFARQKLELKQKTHIVVGTPGRVLDHI----EKGTLSLEC  146

Query  125  FSLIVVDEC  133
               +V+DE 
Sbjct  147  LKYLVIDEA  155


>sp|Q7S5R1|DBP3_NEUCR ATP-dependent RNA helicase dbp-3 OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / 
DSM 1257 / FGSC 987) OX=367110 GN=dbp-3 PE=3 SV=1
Length=614

 Score = 126 bits (317),  Expect = 3e-29, Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 77/223 (35%), Gaps = 24/223 (11%)

Query  321  LCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQR-QFSSSNSPRGIIFTRTRQS  379
               E                +    P   K   L ++L+  Q  S    R ++F   ++ 
Sbjct  404  GDGEGNGNIELQANSRIEQKVEVVDPRG-KEFRLYELLKEAQKGSQKDDRILVFCLYKKE  462

Query  380  AHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATS  439
            A  +  +L ++              G   +S    + Q  +   ++ F+ GT  +LVAT 
Sbjct  463  AVRVEQFLSRK--------------GIKVASIHGDLRQDQRTRSLEAFKSGTTTVLVATD  508

Query  440  VAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELIN-  496
            VA  GLDIP   +V+           V   GR  RA +   A  + TE  +     L+N 
Sbjct  509  VAARGLDIPEVKLVINVTFPLTIEDYVHRIGRTGRAGKLGKAITLFTEHDKAHSGSLVNI  568

Query  497  -----EALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRA  534
                 + +   + +    V+K     Y +  +D+       + 
Sbjct  569  LRAAKQPVPEELLKFGTTVKKKAHDAYGSFYKDIDPNKKATKI  611


 Score = 49.4 bits (116),  Expect = 1e-04, Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 47/136 (35%), Gaps = 18/136 (13%)

Query  14   ALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK-----------VVVLVNRVHLVTQ  62
            +L G+++I    TG+GKT A +      L +    K            V++     L  Q
Sbjct  213  SLSGRDVIGIAETGSGKTMAFSLPCVESLASRPKPKFNSRDRTAHPRAVIVSPTRELAMQ  272

Query  63   HGEEFRRM--LDGRWTVTTLSG-DMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
                   +  L G   V    G D   +    +     D++  T   L+  L+    E  
Sbjct  273  THAALSGLASLVGLSAVCIFGGSDKNEQRNLLYKNNGVDIITATPGRLKDFLS----EGS  328

Query  120  VELTVFSLIVVDECHH  135
            + L   S  V+DE   
Sbjct  329  ISLANVSFAVLDEADR  344


>sp|A4RGD1|RRP3_PYRO7 ATP-dependent rRNA helicase RRP3 OS=Pyricularia 
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 
GN=RRP3 PE=3 SV=1
Length=538

 Score = 126 bits (315),  Expect = 4e-29, Method: Composition-based stats.
 Identities = 48/220 (22%), Positives = 87/220 (40%), Gaps = 24/220 (11%)

Query  332  DDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQ  391
            +   + L       P   K   L   L  +F+       I+FTRT   A  + + L+   
Sbjct  319  EKTVSTLIQNPLFIPHKHKDVYLI-YLANEFAGKT---TIVFTRTVNEAQRVSILLRTLS  374

Query  392  GLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN  451
                           G       ++Q  +   + KF+  + ++LVAT VA  GLDIP  +
Sbjct  375  --------------FGAIPLHGQLSQSMRLGALNKFKARSRDILVATDVAARGLDIPEVD  420

Query  452  VVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAA  509
            +V+ + +  + ++ +   GR ARA +S  A  + T+   EL   +   AL          
Sbjct  421  LVINFDMPQDSMTYIHRVGRTARAGRSGRAISIITQYDLELWLRIEKAAL----NGRKLP  476

Query  510  VQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPV  549
            + + D+ E       +++A    R    A  E++ ++  V
Sbjct  477  LFQPDKEEVMVFKERVEEAQRHAREEMKALHEDRGKKGAV  516


 Score = 63.3 bits (152),  Expect = 5e-09, Method: Composition-based stats.
 Identities = 63/429 (15%), Positives = 133/429 (31%), Gaps = 44/429 (10%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVT---Q  62
            Q + I  AL+G+++I    TG+GKT A A  + +  LE       +VL     L     Q
Sbjct  137  QEQAIPLALQGRDVIGIAETGSGKTAAFALPILQSLLEKPQPLFGLVLAPTRELAAQIGQ  196

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
              E     +  R  V     DM  ++    L +   +++ T   L   L   +      L
Sbjct  197  TFEALGASISLRCAVVVGGLDMVSQST--ALGKKPHIVVATPGRLLDHLEKTKG---FSL  251

Query  123  TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAI  182
                 +V+DE      D  +  I+ + L+   +      +    +A+  +   S    ++
Sbjct  252  RSLKFLVMDEADRLL-DLDFGPILDKILKFLPRER----RTFLFSATMSSKVESLQRASL  306

Query  183  NHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHD  242
               L++  +      +S     P    H  +      L      + F      +  +  +
Sbjct  307  RDPLKVSVSSSQEKTVSTLIQNPLFIPHKHKDVYLIYLA-----NEFAGKTTIVFTRTVN  361

Query  243  HLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDA  302
              +   +  +  +        +LS++  L  L + +  +  +    D       +  VD 
Sbjct  362  EAQRVSILLRTLSFGAIPLHGQLSQSMRLGALNKFKARSRDILVATDVAARGLDIPEVDL  421

Query  303  LAALQD------FYHR--EHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEML  354
            +           + HR        +   A   +     +    +   A +G + P     
Sbjct  422  VINFDMPQDSMTYIHRVGRTARAGRSGRAISIITQYDLELWLRIEKAALNGRKLP-----  476

Query  355  EKILQRQFSSSNSPRGIIFTRTRQSAHSLLL----WLQQQQGLQTVDIRAQLLIGAGNSS  410
                   F        ++F    + A          L + +G +   ++     G+    
Sbjct  477  ------LFQPDKEE-VMVFKERVEEAQRHAREEMKALHEDRGKKGAVLK-GRKRGSATKR  528

Query  411  QSTHMTQRD  419
            +   M   +
Sbjct  529  RHDDMDAEE  537


>sp|Q4IJH1|DBP3_GIBZE ATP-dependent RNA helicase DBP3 OS=Gibberella 
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / 
NRRL 31084 / PH-1) OX=229533 GN=DBP3 PE=3 SV=1
Length=581

 Score = 126 bits (316),  Expect = 4e-29, Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 75/194 (39%), Gaps = 23/194 (12%)

Query  350  KLEMLEKILQRQFSSSN-SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN  408
            K   L ++L+     S  + R ++F   ++ A  +  +L ++       IR   + G   
Sbjct  399  KEFRLLEVLKEHQQGSKKNDRILVFCLYKKEATRIENFLSRK------GIRVGGIHG---  449

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
                  + Q  +   ++ F+ G   +LVAT VA  GLDIP   +V+           V  
Sbjct  450  -----DLRQEQRTRSLEAFKSGQTPVLVATDVAARGLDIPEVKLVINVTFPLTIEDYVHR  504

Query  469  RGR-ARADQSVYAF-VATEGSRELKRELI------NEALETLMEQAVAAVQKMDQAEYQA  520
             GR  RA ++  A    T   +     L+      N+ +   + +    V+K     Y A
Sbjct  505  IGRTGRAGKTGQAITFFTVEDKSHSGSLVNILRGANQPVPEDLLKFGTTVKKKAHDMYGA  564

Query  521  KIRDLQQAALTKRA  534
              +D+   A + + 
Sbjct  565  FFKDVDMNAKSTKI  578


 Score = 54.0 bits (128),  Expect = 3e-06, Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 48/124 (39%), Gaps = 7/124 (6%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA--KVVVLVNRVHLVTQHGEEFRRMLD  72
            L G+++I    TG+GKT A A      +  +     K VV+     L  Q  E+   +  
Sbjct  196  LSGRDVIGVAETGSGKTMAFALPCVEAISALKHKHTKAVVVSPTRELAMQTYEQMASVAA  255

Query  73   G-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVD  131
              R     L G          L R  D+++ T   L+  ++       V+L+  +  V+D
Sbjct  256  LNRMKCVCLYGGASKDDQRNLLNRGADIIVATPGRLKDFMSD----GTVDLSHSAFAVLD  311

Query  132  ECHH  135
            E   
Sbjct  312  EADR  315


>sp|Q6CH58|RRP3_YARLI ATP-dependent rRNA helicase RRP3 OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=RRP3 
PE=3 SV=1
Length=480

 Score = 124 bits (312),  Expect = 4e-29, Method: Composition-based stats.
 Identities = 62/343 (18%), Positives = 119/343 (35%), Gaps = 43/343 (13%)

Query  228  PFGDLLKKLMDQIHDHLEMPELSRKF--GTQMYEQQVVKLSEAAALAGLQEQRVYALHLR  285
            P  +L  ++ +          L      G      Q V LS+   +      R+   HL 
Sbjct  140  PTRELAYQISETFEALGSAMGLRTAVVVGGMNMMTQAVALSKKPHVIVATPGRLVD-HLE  198

Query  286  RYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFD----DRKNELAHL  341
                  L       +D    L D      + K   +   +R   LF      +  +L   
Sbjct  199  NTKGFSLRTLKFLVMDEADRLLDMEFGPSLDKILKVIPRQRNTYLFSATMTSKVEKLQRA  258

Query  342  ATHGPE----NPKLEMLEKILQRQ----FSSSNSPRG-----------IIFTRTRQSAHS  382
            +   P     + K +  + +LQ      F   ++              IIF RT+     
Sbjct  259  SLVDPVRVAVSTKYQTADNLLQYMVFCPFKHKDTHLVYLVSENAGNSMIIFARTKSDTQR  318

Query  383  LLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAE  442
            + L L+               +G G       ++Q  +   + KF+ G+ N+L+AT VA 
Sbjct  319  ISLLLRN--------------LGYGAIPLHGDLSQTARLGALNKFKSGSRNILIATDVAS  364

Query  443  EGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALET  501
             GLDIP  ++V+ Y + ++  S +   GR ARA ++  +              I  AL  
Sbjct  365  RGLDIPAVDLVINYDIPSDSKSYIHRVGRTARAGRAGKSVALVSQYDLELYLRIEGALGK  424

Query  502  LMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQR  544
             ++      + +    +  ++ +  +AA+ +   +   ++  +
Sbjct  425  KLDSYPLESEAV--MLFSERVAEASRAAIQEMKGEDGTKKRSK  465


 Score = 62.5 bits (150),  Expect = 7e-09, Method: Composition-based stats.
 Identities = 34/131 (26%), Positives = 50/131 (38%), Gaps = 5/131 (4%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q + I  ALEG++II    TG+GKT A A  V +   E       VVL     L  Q  E
Sbjct  91   QAQSIPYALEGRDIIGLAQTGSGKTAAFAIPVLQSLYENPQPLYCVVLAPTRELAYQISE  150

Query  66   EFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
             F  +          + G M        L++   +++ T   L   L + +      L  
Sbjct  151  TFEALGSAMGLRTAVVVGGMNMMTQAVALSKKPHVIVATPGRLVDHLENTKG---FSLRT  207

Query  125  FSLIVVDECHH  135
               +V+DE   
Sbjct  208  LKFLVMDEADR  218


>sp|A5DAC8|DBP3_PICGU ATP-dependent RNA helicase DBP3 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DBP3 PE=3 
SV=2
Length=534

 Score = 125 bits (314),  Expect = 4e-29, Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 78/194 (40%), Gaps = 25/194 (13%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K   L ++L++     +  + ++F   ++ A  +   L++               G   +
Sbjct  356  KERRLLQLLRQY---GSDQKILVFALYKKEATRVEAMLRRS--------------GFNVA  398

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
            +    ++Q+ +   +  F+ G  NLL+AT VA  GLDIP+  VV+           V   
Sbjct  399  AIHGDLSQQQRTSALDSFKRGDSNLLLATDVAARGLDIPNVKVVINLTFPLTVEDYVHRI  458

Query  470  GR-ARADQSVYAF-VATEGSRELKRELIN------EALETLMEQAVAAVQKMDQAEYQAK  521
            GR  RA Q+  A  + TE  + L   L+N      + +   + +     +K   + Y A 
Sbjct  459  GRTGRAGQTGIAHTLFTEHEKHLSGALMNVLRGAGQPVPDELLKFGGHTKKKSHSAYGAF  518

Query  522  IRDLQQAALTKRAA  535
             +D+      K+  
Sbjct  519  FKDVDMTKTAKKIK  532


 Score = 47.9 bits (112),  Expect = 3e-04, Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 46/125 (37%), Gaps = 10/125 (8%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA--KVVVLVNRVHLVTQHGEEFRRMLD  72
            L G +++    TG+GKT A    A  ++ T +    +V+ +     L  Q  +    +  
Sbjct  164  LNGDDVVGVAETGSGKTFAFGVPAINNIITDNKKGLRVLCISPTRELALQIYDNLTMLTK  223

Query  73   --GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV  130
              G   V    G   P+       +   +++ T   L   L        V+L+    +V+
Sbjct  224  NCGLTCVAIYGG--VPKDQQIKAVKTASVVVATPGRLVDLLND----GAVDLSTIDYLVL  277

Query  131  DECHH  135
            DE   
Sbjct  278  DEADR  282


>sp|Q64060|DDX4_RAT Probable ATP-dependent RNA helicase DDX4 OS=Rattus 
norvegicus OX=10116 GN=Ddx4 PE=1 SV=1
Length=713

 Score = 127 bits (318),  Expect = 4e-29, Method: Composition-based stats.
 Identities = 57/298 (19%), Positives = 105/298 (35%), Gaps = 56/298 (19%)

Query  255  TQMYEQQVVKLSEAAALAGLQEQRVYALHL-RRYNDALLIHDTVRAVDALAALQDFYHRE  313
                 Q V   +   A  G     +    +  +    L++ +  R +D     +    ++
Sbjct  391  GHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGFGPEM---KK  447

Query  314  HVTKTQILCAERRLLALFDD-RKNELAHLATH----------------------------  344
             ++   +   E+R   LF      E+  LA                              
Sbjct  448  LISCPGMPSKEQRQTLLFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQSILQV  507

Query  345  GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI  404
            GP   K   L +IL+         R ++F  T++ A  +  +L Q++             
Sbjct  508  GPVFKK-RKLVEILRNI----GDERPMVFVETKKKADFIATFLCQEK-------------  549

Query  405  GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
                +S      QR++++ +  F+ G   +LVATSVA  GLDI +   V+ + L +    
Sbjct  550  -ISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFNLPSTIDE  608

Query  465  MVQARGR-ARADQSVYA--FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQ  519
             V   GR  R   +  A  F  TE    L + L+ + L    +   A ++++  + Y 
Sbjct  609  YVHRIGRTGRCGNTGRAISFFDTESDNHLAQPLV-KVLSDAQQDVPAWLEEIAFSSYA  665


 Score = 48.3 bits (113),  Expect = 2e-04, Method: Composition-based stats.
 Identities = 26/166 (16%), Positives = 56/166 (34%), Gaps = 16/166 (10%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRH----------LETVDGAKVVVLVNRVHLVTQHG  64
            L G++++    TG+GKT A       H           + +   + +++     L+ Q  
Sbjct  308  LAGRDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIY  367

Query  65   EEFRRM-LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELT  123
             E R+           + G          + +  ++L  T   L   +   +    + L 
Sbjct  368  LEARKFSFGTCVRAVVIYGGTQFGHSIRQIVQGCNILCATPGRLMDIIGKEK----IGLK  423

Query  124  VFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS  169
                +V+DE      D  +   M + +      ++   Q L  +A+
Sbjct  424  QVKYLVLDEADR-MLDMGFGPEMKKLISCPGMPSKEQRQTLLFSAT  468


>sp|A5DL80|DBP2_PICGU ATP-dependent RNA helicase DBP2 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DBP2 PE=3 
SV=3
Length=554

 Score = 125 bits (314),  Expect = 5e-29, Method: Composition-based stats.
 Identities = 55/303 (18%), Positives = 106/303 (35%), Gaps = 52/303 (17%)

Query  253  FGTQMYEQQVVKLSEAAALAGLQEQRVY------ALHLRRYNDALLIHDTVRAVDALAAL  306
            +G     QQ+  L+    +      R+         +LRR    L++ +  R +D     
Sbjct  233  YGGAPKGQQIRDLARGVEICIATPGRLIDMLETGKTNLRR-VTYLVLDEADRMLDMGFEP  291

Query  307  QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGP--------------------  346
            Q    R+ V + +         A +      L     + P                    
Sbjct  292  Q---IRKIVDQIRPDRQTLMWSATWPKEVQTLTRDYLNDPIQVTIGSLELAASHTITQIV  348

Query  347  ----ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL  402
                E  K + L K L    ++    + +IF+ T+++   +  +L+              
Sbjct  349  EVLSEFEKRDRLVKHL-ETATADKEAKVLIFSSTKRACDEITSYLRAD------------  395

Query  403  LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE  462
              G    +      Q ++  V+++F+ G   ++VAT VA  G+D+   + V+ Y +  N 
Sbjct  396  --GWPALAIHGDKQQNERDWVLREFKTGKSPIMVATDVAARGIDVKGISYVINYDMPGNI  453

Query  463  ISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA  520
               V   GR  RA  +  A  + TE + +L  +L     E         + + D+  + +
Sbjct  454  EDYVHRIGRTGRAGTTGTAVSLFTEANSKLGGDLCKIMREANQ-TVPPELLRYDRRSFGS  512

Query  521  KIR  523
             IR
Sbjct  513  HIR  515


 Score = 53.3 bits (126),  Expect = 6e-06, Method: Composition-based stats.
 Identities = 63/347 (18%), Positives = 117/347 (34%), Gaps = 44/347 (13%)

Query  14   ALEGKNIIIWLPTGAGKTR------AAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEF  67
            AL G+++I    TG+GKT            A+  L   DG  V+VL     L  Q  +E 
Sbjct  159  ALSGRDMIGIAATGSGKTLSYCLPSIVHINAQPLLGPGDGPIVLVLAPTRELAVQIQQEC  218

Query  68   RRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS  126
             +     R   T + G          LAR  ++ I T   L   L    E     L   +
Sbjct  219  SKFGASSRIRNTCIYGGAPKGQQIRDLARGVEICIATPGRLIDML----ETGKTNLRRVT  274

Query  127  LIVVDECHHTHKDTVYNVIMSQYLELKLQR----AQPLPQVLGLTAS-PGTGGASKLDGA  181
             +V+DE          + ++    E ++++     +P  Q L  +A+ P        D  
Sbjct  275  YLVLDEA---------DRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVQTLTRDYL  325

Query  182  INHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIH  241
             + +     +L+     +       L E  ++     +L    +      L+     +  
Sbjct  326  NDPIQVTIGSLELAASHTITQIVEVLSEFEKRDRLVKHLETATADKEAKVLIFSSTKRAC  385

Query  242  DHLEMPELSRKFGT----------QMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDAL  291
            D  E+    R  G           Q     V++  +      +    V A  +     + 
Sbjct  386  D--EITSYLRADGWPALAIHGDKQQNERDWVLREFKTGKSPIMVATDVAARGIDVKGISY  443

Query  292  LIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNEL  338
            +I+      D    ++D+ HR  + +T         ++LF +  ++L
Sbjct  444  VIN-----YDMPGNIEDYVHR--IGRTGRAGTTGTAVSLFTEANSKL  483


>sp|Q6FNK8|RRP3_CANGA ATP-dependent rRNA helicase RRP3 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=RRP3 PE=3 SV=1
Length=493

 Score = 124 bits (312),  Expect = 5e-29, Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 82/216 (38%), Gaps = 32/216 (15%)

Query  346  PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
            P   K   L  +L      +     IIFTRT+ +A  L            ++  A  L G
Sbjct  296  PGGLKNTFLIYLLNEFIGKT----VIIFTRTKANAERLSGL------CNLLEFSATALHG  345

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM  465
                     + Q  +   +  F+ G  ++LVAT VA  GLDIP  ++V+ Y +  +  S 
Sbjct  346  --------DLNQNQRTGALDLFKAGKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSY  397

Query  466  VQARGR-ARADQSVYAFVATEG-------------SRELKRELINEALETLMEQAVAAVQ  511
            +   GR ARA +S  +                    ++L +E +++ +   +  +V    
Sbjct  398  IHRVGRTARAGRSGKSISLVSQYDLELILRIEEVLGKKLPKESVDKNIILTLRDSVDKAN  457

Query  512  KMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQF  547
                 E   + ++ Q     +R    A+    R++ 
Sbjct  458  GEVVMEMNRRNKEKQARGKGRRGRMMAKENMDREEK  493


 Score = 57.9 bits (138),  Expect = 2e-07, Method: Composition-based stats.
 Identities = 34/131 (26%), Positives = 47/131 (36%), Gaps = 5/131 (4%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q   I PAL G ++I    TG+GKT A A  +  +  E        VL     L  Q  E
Sbjct  100  QARAIPPALAGSDVIGLAQTGSGKTAAFAIPILNKLWEDQQPYYACVLAPTRELAQQIKE  159

Query  66   EFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
             F  +        T + G M        L R   ++I T   L   L + +      L  
Sbjct  160  TFDSLGSLMGVRTTCIVGGMNMMDQARDLMRKPHIIIATPGRLMDHLENTKG---FSLKN  216

Query  125  FSLIVVDECHH  135
               +V+DE   
Sbjct  217  LKFLVMDEADR  227


>sp|Q6CT85|RRP3_KLULA ATP-dependent rRNA helicase RRP3 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / 
NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=RRP3 PE=3 SV=1
Length=487

 Score = 124 bits (311),  Expect = 6e-29, Method: Composition-based stats.
 Identities = 47/202 (23%), Positives = 85/202 (42%), Gaps = 25/202 (12%)

Query  346  PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
            P   K   L  +L      S     I+FTRT+ +A  +            ++  A  L G
Sbjct  290  PGGLKNTFLIYLLNEFIGKS----TIVFTRTKANAERISNL------CNLLEFSATALHG  339

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM  465
                     + Q  +   +  F+ G  ++LVAT VA  GLDIP  ++V+ Y +  +  S 
Sbjct  340  --------DLNQNQRTGALDLFKAGKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSY  391

Query  466  VQARGR-ARADQSVYAF-VATEGSREL---KRELINEAL--ETLMEQAVAAVQKMDQAEY  518
            +   GR ARA +S  +  + ++   EL     +++ + L  E + + A+ A++       
Sbjct  392  IHRVGRTARAGRSGKSISLVSQYDLELILRIEDVLGKKLPKENVDKDAILALRDSVDKAN  451

Query  519  QAKIRDLQQAALTKRAAQAAQR  540
               + +L +    K+A    +R
Sbjct  452  GEVVMELNRRNKEKQARGKGRR  473


 Score = 58.3 bits (139),  Expect = 2e-07, Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 48/131 (37%), Gaps = 5/131 (4%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q + I PAL+G +II    TG+GKT A A  +  +           +L     L  Q  E
Sbjct  94   QSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPYYACILAPTRELAQQIKE  153

Query  66   EFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
             F  +        T + G M        L R   ++I T   L   L + +      L  
Sbjct  154  TFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIATPGRLMDHLENTKG---FNLRK  210

Query  125  FSLIVVDECHH  135
               +V+DE   
Sbjct  211  LKYLVMDEADR  221


>sp|P9WH05|DEAD_MYCTU ATP-dependent RNA helicase DeaD OS=Mycobacterium 
tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=deaD 
PE=1 SV=1
Length=563

 Score = 125 bits (314),  Expect = 6e-29, Method: Composition-based stats.
 Identities = 59/326 (18%), Positives = 112/326 (34%), Gaps = 37/326 (11%)

Query  225  SQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHL  284
                    + +   +   +L    +   +G   Y  Q+  L   A +      R+   HL
Sbjct  89   PTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRGAQVVVGTPGRMID-HL  147

Query  285  RRY------NDALLIHDTVRA--------VDALAALQDFYHREHVTKTQILCAERRLLAL  330
             R        D L++ +            V+ + +    Y +  +    +  A R+L A 
Sbjct  148  ERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVALFSATMPPAIRKLSAK  207

Query  331  FDDRKNEL------AHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLL  384
            +     E+      A          ++      L R          I+F RT+Q+   + 
Sbjct  208  YLHDPFEVTCKAKTAVAENISQSYIQVARKMDALTRVLEVEPFEAMIVFVRTKQATEEIA  267

Query  385  LWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEG  444
              L+ +              G   ++ S  + Q  ++  I   +DG +++LVAT VA  G
Sbjct  268  EKLRAR--------------GFSAAAISGDVPQAQRERTITALRDGDIDILVATDVAARG  313

Query  445  LDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSR-ELKRELINEALETL  502
            LD+   + V+ Y +  +  S V   GR  RA +S  A +        L + +     +TL
Sbjct  314  LDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIEKATRQTL  373

Query  503  MEQAVAAVQKMDQAEYQAKIRDLQQA  528
             E  +  V+ ++          +  A
Sbjct  374  TEAQLPTVEDVNTQRVAKFADSITNA  399


 Score = 52.1 bits (123),  Expect = 1e-05, Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 41/111 (37%), Gaps = 7/111 (6%)

Query  26   TGAGKTRAAAYVAKRHLETVDG-AKVVVLVNRVHLVTQHGEEFRRMLD--GRWTVTTLSG  82
            TG GKT A A      ++      + +VLV    L  Q  E F R      +  V  + G
Sbjct  59   TGTGKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYG  118

Query  83   DMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC  133
                      L R   +++ T   +   L    E   ++L+    +V+DE 
Sbjct  119  GSSYAVQLAGLRRGAQVVVGTPGRMIDHL----ERATLDLSRVDFLVLDEA  165


>sp|P9WH04|DEAD_MYCTO ATP-dependent RNA helicase DeaD OS=Mycobacterium 
tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=deaD 
PE=3 SV=1
Length=563

 Score = 125 bits (314),  Expect = 6e-29, Method: Composition-based stats.
 Identities = 59/326 (18%), Positives = 112/326 (34%), Gaps = 37/326 (11%)

Query  225  SQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHL  284
                    + +   +   +L    +   +G   Y  Q+  L   A +      R+   HL
Sbjct  89   PTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRGAQVVVGTPGRMID-HL  147

Query  285  RRY------NDALLIHDTVRA--------VDALAALQDFYHREHVTKTQILCAERRLLAL  330
             R        D L++ +            V+ + +    Y +  +    +  A R+L A 
Sbjct  148  ERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVALFSATMPPAIRKLSAK  207

Query  331  FDDRKNEL------AHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLL  384
            +     E+      A          ++      L R          I+F RT+Q+   + 
Sbjct  208  YLHDPFEVTCKAKTAVAENISQSYIQVARKMDALTRVLEVEPFEAMIVFVRTKQATEEIA  267

Query  385  LWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEG  444
              L+ +              G   ++ S  + Q  ++  I   +DG +++LVAT VA  G
Sbjct  268  EKLRAR--------------GFSAAAISGDVPQAQRERTITALRDGDIDILVATDVAARG  313

Query  445  LDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSR-ELKRELINEALETL  502
            LD+   + V+ Y +  +  S V   GR  RA +S  A +        L + +     +TL
Sbjct  314  LDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIEKATRQTL  373

Query  503  MEQAVAAVQKMDQAEYQAKIRDLQQA  528
             E  +  V+ ++          +  A
Sbjct  374  TEAQLPTVEDVNTQRVAKFADSITNA  399


 Score = 52.1 bits (123),  Expect = 1e-05, Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 41/111 (37%), Gaps = 7/111 (6%)

Query  26   TGAGKTRAAAYVAKRHLETVDG-AKVVVLVNRVHLVTQHGEEFRRMLD--GRWTVTTLSG  82
            TG GKT A A      ++      + +VLV    L  Q  E F R      +  V  + G
Sbjct  59   TGTGKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYG  118

Query  83   DMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC  133
                      L R   +++ T   +   L    E   ++L+    +V+DE 
Sbjct  119  GSSYAVQLAGLRRGAQVVVGTPGRMIDHL----ERATLDLSRVDFLVLDEA  165


>sp|P20447|DBP3_YEAST ATP-dependent RNA helicase DBP3 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DBP3 
PE=1 SV=2
Length=523

 Score = 124 bits (312),  Expect = 6e-29, Method: Composition-based stats.
 Identities = 42/195 (22%), Positives = 79/195 (41%), Gaps = 25/195 (13%)

Query  350  KLEMLEKILQR-QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN  408
            K   L ++L++       + + +IF   ++ A  +   L+                G   
Sbjct  341  KERKLLELLKKYHSGPKKNEKVLIFALYKKEAARVERNLK--------------YNGYNV  386

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
            ++    ++Q+ + + + +F+ G  NLL+AT VA  GLDIP+   V+           V  
Sbjct  387  AAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHR  446

Query  469  RGR-ARADQSVYAF-VATEGSRELKRELIN-------EALETLMEQAVAAVQKMDQAEYQ  519
             GR  RA Q+  A  + TE  + L   L+N          E L++      +K + + Y 
Sbjct  447  IGRTGRAGQTGTAHTLFTEQEKHLAGGLVNVLNGANQPVPEDLIKFGTHT-KKKEHSAYG  505

Query  520  AKIRDLQQAALTKRA  534
            +  +D+      K+ 
Sbjct  506  SFFKDVDLTKKPKKI  520


 Score = 56.3 bits (134),  Expect = 7e-07, Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 9/125 (7%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK---VVVLVNRVHLVTQHGEEFRRML  71
            L GK+++    TG+GKT A    A  HL      +   V+V+     L +Q  +    + 
Sbjct  147  LSGKDVVGVAETGSGKTFAFGVPAISHLMNDQKKRGIQVLVISPTRELASQIYDNLIVLT  206

Query  72   DGR-WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV  130
            D        + G +        L +   +++ T   L   L    +E  V+L+  + +V+
Sbjct  207  DKVGMQCCCVYGGVPKDEQRIQLKKS-QVVVATPGRLLDLL----QEGSVDLSQVNYLVL  261

Query  131  DECHH  135
            DE   
Sbjct  262  DEADR  266


>sp|Q91372|DDX4_XENLA Probable ATP-dependent RNA helicase DDX4 
OS=Xenopus laevis OX=8355 GN=ddx4 PE=2 SV=1
Length=700

 Score = 126 bits (316),  Expect = 6e-29, Method: Composition-based stats.
 Identities = 51/263 (19%), Positives = 91/263 (35%), Gaps = 55/263 (21%)

Query  265  LSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAE  324
             +    L  +  +    L   RY   L++ +  R +D   A +     + +TK  +   E
Sbjct  406  CATPGRLLDIVSKEKIGLSKLRY---LVLDEADRMLDMGFAPE---IEKLMTKPGMPTKE  459

Query  325  RRLLALFDDRKNE----------------------------LAHLATHGPENPKLEMLEK  356
            +R   +F     E                            +A       EN K+E L +
Sbjct  460  KRQTLMFSATYPEEIRRLASNYLKSEHLFVVVGLVGGACSDVAQTVLEMRENGKMEKLLE  519

Query  357  ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT  416
            IL+    SS   R +IF  T++ A  +  +L Q++                ++S      
Sbjct  520  ILK----SSEKERTMIFVNTKKKADFIAGYLCQEK--------------FSSTSIHGDRE  561

Query  417  QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARA--  474
            Q  ++  +  F+ G   ++V T+VA  GLDI +   V+ Y +       V   GR     
Sbjct  562  QYQRESALWDFRTGKCTVIVCTAVAARGLDIENVQHVINYDVPKEVDEYVHRIGRTGRCG  621

Query  475  -DQSVYAFVATEGSRELKRELIN  496
                  +F   +    + R L+ 
Sbjct  622  NTGKATSFFNVQDDHVIARPLVK  644


 Score = 42.5 bits (98),  Expect = 0.012, Method: Composition-based stats.
 Identities = 20/134 (15%), Positives = 50/134 (37%), Gaps = 19/134 (14%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA------------KVVVLVNRVHLVTQ  62
            + G++++    TG+GKT  AA++       ++              + +++     L+ Q
Sbjct  309  MAGRDLMACAQTGSGKT--AAFLLPILSYMMNEGITASQYLQLQEPEAIIIAPTRELINQ  366

Query  63   HGEEFRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVE  121
               + R+           + G + P      + +  ++L  T   L   ++  +    + 
Sbjct  367  IYLDARKFSYGTCVRPVVVYGGIQPVHAMRDVEKGCNILCATPGRLLDIVSKEK----IG  422

Query  122  LTVFSLIVVDECHH  135
            L+    +V+DE   
Sbjct  423  LSKLRYLVLDEADR  436


>sp|Q755A5|DBP3_EREGS ATP-dependent RNA helicase DBP3 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=DBP3 PE=3 SV=1
Length=535

 Score = 125 bits (313),  Expect = 6e-29, Method: Composition-based stats.
 Identities = 44/212 (21%), Positives = 82/212 (39%), Gaps = 25/212 (12%)

Query  333  DRKNELAHLATHGPENPKLEMLEKILQRQFSS-SNSPRGIIFTRTRQSAHSLLLWLQQQQ  391
                 +  +        K + L ++L++  S    + + +IF   ++ A  +   L+   
Sbjct  336  SANKRITQVVEVIDPFKKEKRLLELLKQYQSGAKKNDKVLIFALYKKEASRVERNLK---  392

Query  392  GLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN  451
                         G   ++    ++Q+ + + + +F+ GT NLL+AT VA  GLDIP+  
Sbjct  393  -----------YNGYNVAAIHGDLSQQQRTQALSEFKAGTANLLLATDVAARGLDIPNVK  441

Query  452  VVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELIN-------EALETL  502
             V+           V   GR  RA  +  A  + TE  + L   L+N          E L
Sbjct  442  TVINLTFPLTVEDYVHRIGRTGRAGATGVAHTLFTEQEKHLAGALVNVLNGAGQPVPEEL  501

Query  503  MEQAVAAVQKMDQAEYQAKIRDLQQAALTKRA  534
            M+      +K +   Y A  +++      K+ 
Sbjct  502  MKFGTHTKRK-EHNAYGAFYKNVDLTKKAKKI  532


 Score = 55.2 bits (131),  Expect = 2e-06, Method: Composition-based stats.
 Identities = 38/238 (16%), Positives = 77/238 (32%), Gaps = 25/238 (11%)

Query  15   LEGKNIIIWLPTGAGKTRA----AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRM  70
            L GK++I    TG+GKT A    A         T  G K +V+     L +Q  +   ++
Sbjct  158  LAGKDVIGVAETGSGKTFAFGVPAINSLMSEKSTPRGVKCLVISPTRELASQIYDNLVQL  217

Query  71   LDGR-WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIV  129
             D        + G +   +    L +   +++ T   L   +    EE   +L     +V
Sbjct  218  TDKVGLNCCCVYGGVQKDSQREQLKKA-QVVVATPGRLLDLI----EEGSAKLAGVQYLV  272

Query  130  VDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLC  189
            +DE     +             +  +    + Q L  TA+               V +L 
Sbjct  273  LDEADRMLEKG----FEEDIKRIIKETKSDVRQTLMFTAT-----------WPKEVRELA  317

Query  190  ANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMP  247
            +      +        +L  + +       +   + +    +LLK+       + ++ 
Sbjct  318  STFMRAPVKVSIGNRDELSANKRITQVVEVIDPFKKEKRLLELLKQYQSGAKKNDKVL  375


>sp|P0A4D8|CSHA_STRR6 DEAD-box ATP-dependent RNA helicase CshA 
OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) OX=171101 
GN=cshA PE=3 SV=1
Length=524

 Score = 124 bits (312),  Expect = 7e-29, Method: Composition-based stats.
 Identities = 72/402 (18%), Positives = 133/402 (33%), Gaps = 49/402 (12%)

Query  168  ASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQD  227
            ASP       L      V+       T    +     P L++   +      L    +++
Sbjct  24   ASPIQEQTIPLALEGKDVIGQAQ---TGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRE  80

Query  228  PFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRY  287
                  ++L        +  ++   +G    E+Q+  L   A +      R+  L  R+ 
Sbjct  81   LAVQSQEELF--RFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKA  138

Query  288  NDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFD----DRKNELAHLAT  343
                 I   +  +D    + +    E +        E R   LF     D    +     
Sbjct  139  LKLQDIETLI--LDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFM  196

Query  344  HGPENPKL--EMLEKILQRQFS-----------------SSNSPRGIIFTRTRQSAHSLL  384
              PE+ K+  + L   L  Q+                   +     I+F RT++    L 
Sbjct  197  KAPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVAQPELAIVFGRTKRRVDELT  256

Query  385  LWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEG  444
                   GL+    RA+ + G         + Q  +  V++ F++G L++LVAT VA  G
Sbjct  257  R------GLKIRGFRAEGIHG--------DLDQNKRLRVLRDFKNGNLDVLVATDVAARG  302

Query  445  LDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLM  503
            LDI     V  Y +  +  S V   GR  RA +S  +      +         + +E L 
Sbjct  303  LDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGY----LQIIENLT  358

Query  504  EQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQ  545
            ++ +  ++     E     + +    + +  A    R N  +
Sbjct  359  KKRMKGLKPASVEESFQSKKQVALKKIERDFADETIRANFEK  400


 Score = 54.8 bits (130),  Expect = 2e-06, Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 48/129 (37%), Gaps = 6/129 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQ-HG  64
            Q + I  ALEGK++I    TG GKT A        + T +   + +V+     L  Q   
Sbjct  28   QEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQE  87

Query  65   EEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
            E FR        V ++ G          L     +++ T   L   +        ++L  
Sbjct  88   ELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKA----LKLQD  143

Query  125  FSLIVVDEC  133
               +++DE 
Sbjct  144  IETLILDEA  152


>sp|P0A4D7|CSHA_STRPN DEAD-box ATP-dependent RNA helicase CshA 
OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 
/ TIGR4) OX=170187 GN=cshA PE=3 SV=1
Length=524

 Score = 124 bits (312),  Expect = 7e-29, Method: Composition-based stats.
 Identities = 72/402 (18%), Positives = 133/402 (33%), Gaps = 49/402 (12%)

Query  168  ASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQD  227
            ASP       L      V+       T    +     P L++   +      L    +++
Sbjct  24   ASPIQEQTIPLALEGKDVIGQAQ---TGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRE  80

Query  228  PFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRY  287
                  ++L        +  ++   +G    E+Q+  L   A +      R+  L  R+ 
Sbjct  81   LAVQSQEELF--RFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKA  138

Query  288  NDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFD----DRKNELAHLAT  343
                 I   +  +D    + +    E +        E R   LF     D    +     
Sbjct  139  LKLQDIETLI--LDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFM  196

Query  344  HGPENPKL--EMLEKILQRQFS-----------------SSNSPRGIIFTRTRQSAHSLL  384
              PE+ K+  + L   L  Q+                   +     I+F RT++    L 
Sbjct  197  KAPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVAQPELAIVFGRTKRRVDELT  256

Query  385  LWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEG  444
                   GL+    RA+ + G         + Q  +  V++ F++G L++LVAT VA  G
Sbjct  257  R------GLKIRGFRAEGIHG--------DLDQNKRLRVLRDFKNGNLDVLVATDVAARG  302

Query  445  LDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLM  503
            LDI     V  Y +  +  S V   GR  RA +S  +      +         + +E L 
Sbjct  303  LDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGY----LQIIENLT  358

Query  504  EQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQ  545
            ++ +  ++     E     + +    + +  A    R N  +
Sbjct  359  KKRMKGLKPASVEESFQSKKQVALKKIERDFADETIRANFEK  400


 Score = 54.8 bits (130),  Expect = 2e-06, Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 48/129 (37%), Gaps = 6/129 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQ-HG  64
            Q + I  ALEGK++I    TG GKT A        + T +   + +V+     L  Q   
Sbjct  28   QEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQE  87

Query  65   EEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
            E FR        V ++ G          L     +++ T   L   +        ++L  
Sbjct  88   ELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKA----LKLQD  143

Query  125  FSLIVVDEC  133
               +++DE 
Sbjct  144  IETLILDEA  152


>sp|Q6FS54|DBP3_CANGA ATP-dependent RNA helicase DBP3 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DBP3 PE=3 SV=1
Length=540

 Score = 124 bits (312),  Expect = 7e-29, Method: Composition-based stats.
 Identities = 46/214 (21%), Positives = 82/214 (38%), Gaps = 26/214 (12%)

Query  331  FDDRKNELAHLATHGPENPKLEMLEKILQRQFS-SSNSPRGIIFTRTRQSAHSLLLWLQQ  389
                K     +    P + K   L  +L++  S    + + +IF   ++ A  +   L  
Sbjct  340  LSANKRITQIVEVVDPRS-KERKLLDLLKKYQSGPKKNDKVLIFALYKKEASRVERNLN-  397

Query  390  QQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPH  449
                           G   ++    ++Q+ + + + +F+ G  NLL+AT VA  GLDIP+
Sbjct  398  -------------YNGYKVAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPN  444

Query  450  CNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELIN-------EALE  500
               V+           V   GR  RA Q+  A  + TE  + L   L+N          E
Sbjct  445  VKTVINLTFPLTVEDYVHRIGRTGRAGQTGTAHTLFTEQEKHLAGGLVNVLNGANQPVPE  504

Query  501  TLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRA  534
             L++      +K +   Y A  +D+  +   K+ 
Sbjct  505  DLIKFGTHTKRK-EHGAYGAFFKDIDMSKKPKKI  537


 Score = 56.7 bits (135),  Expect = 4e-07, Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 79/238 (33%), Gaps = 25/238 (11%)

Query  15   LEGKNIIIWLPTGAGKTRA----AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRM  70
            L GK++I    TG+GKT A    A            G KV+V+     L +Q  +    +
Sbjct  163  LSGKDVIGVAETGSGKTFAFGVPAINNLLTSSSKPKGIKVLVISPTRELASQIYDNLVLL  222

Query  71   L-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIV  129
                      + G +        +A+ + +++ T   L   +    EE  V+L+    +V
Sbjct  223  TQKVGIDCCVVYGGVPKDDQRRQIAKSN-VVVATPGRLLDLI----EEGSVDLSPVDYMV  277

Query  130  VDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLC  189
            +DE                   L+    + + +++G T S               V +L 
Sbjct  278  LDEADR---------------MLEKGFEEDIKRIIGQTKSKDRQTLMFTATWPKEVRELA  322

Query  190  ANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMP  247
            +      +        +L  + +       +  R  +    DLLKK       + ++ 
Sbjct  323  STFMKEPVKVSIGNRDELSANKRITQIVEVVDPRSKERKLLDLLKKYQSGPKKNDKVL  380


>sp|A6ZUA1|DBP3_YEAS7 ATP-dependent RNA helicase DBP3 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=DBP3 PE=3 SV=1
Length=523

 Score = 124 bits (312),  Expect = 7e-29, Method: Composition-based stats.
 Identities = 42/195 (22%), Positives = 79/195 (41%), Gaps = 25/195 (13%)

Query  350  KLEMLEKILQR-QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN  408
            K   L ++L++       + + +IF   ++ A  +   L+                G   
Sbjct  341  KERKLLELLKKYHSGPKKNEKVLIFALYKKEAARVERNLK--------------YNGYNI  386

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
            ++    ++Q+ + + + +F+ G  NLL+AT VA  GLDIP+   V+           V  
Sbjct  387  AAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHR  446

Query  469  RGR-ARADQSVYAF-VATEGSRELKRELIN-------EALETLMEQAVAAVQKMDQAEYQ  519
             GR  RA Q+  A  + TE  + L   L+N          E L++      +K + + Y 
Sbjct  447  IGRTGRAGQTGTAHTLFTEQEKHLAGGLVNVLNGANQPVPEDLIKFGTHT-KKKEHSAYG  505

Query  520  AKIRDLQQAALTKRA  534
            +  +D+      K+ 
Sbjct  506  SFFKDVDLTKKPKKI  520


 Score = 56.3 bits (134),  Expect = 7e-07, Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 9/125 (7%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK---VVVLVNRVHLVTQHGEEFRRML  71
            L GK+++    TG+GKT A    A  HL      +   V+V+     L +Q  +    + 
Sbjct  147  LSGKDVVGVAETGSGKTFAFGVPAISHLMNDQKKRGIQVLVISPTRELASQIYDNLIVLT  206

Query  72   DGR-WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV  130
            D        + G +        L +   +++ T   L   L    +E  V+L+  + +V+
Sbjct  207  DKVGMQCCCVYGGVPKDEQRIQLKKS-QVVVATPGRLLDLL----QEGSVDLSQVNYLVL  261

Query  131  DECHH  135
            DE   
Sbjct  262  DEADR  266


>sp|Q0CL13|DBP3_ASPTN ATP-dependent RNA helicase dbp3 OS=Aspergillus 
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=dbp3 
PE=3 SV=1
Length=493

 Score = 124 bits (310),  Expect = 8e-29, Method: Composition-based stats.
 Identities = 39/208 (19%), Positives = 76/208 (37%), Gaps = 24/208 (12%)

Query  335  KNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQ  394
               +  +      + K   L ++L++      + + + F   ++ A  +  +LQ +    
Sbjct  298  NTRIKQVVEVVKPHEKEGRLVQLLKQH--QRGAEKVLAFCLYKKEATRIERFLQSR----  351

Query  395  TVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV  454
                      G   +     ++Q+++   +  F+ G   +LVAT VA  GLDIP   +V+
Sbjct  352  ----------GFKVAGIHGDLSQQERFRSLDAFKTGAATVLVATDVAARGLDIPAVKLVI  401

Query  455  RYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELIN------EALETLMEQA  506
                       V   GR  RA    +A  + TE  +     LIN      + +   + + 
Sbjct  402  NVTFPLTVEDYVHRIGRTGRAGAEGHAITLFTETDKAQSGALINVLKAAGQEVPEELLKF  461

Query  507  VAAVQKMDQAEYQAKIRDLQQAALTKRA  534
               V+K     Y A  +D+       + 
Sbjct  462  GGTVKKKQHDAYGAFFKDVDTTKAATKI  489


 Score = 44.0 bits (102),  Expect = 0.004, Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 48/127 (38%), Gaps = 13/127 (10%)

Query  17   GKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK-------VVVLVNRVHLVTQHGEEFRR  69
            G+++I    TG+GKT A      + +E     K        V++     L  Q  ++ ++
Sbjct  115  GRDVIGIAETGSGKTLAFGLPCLKKIEDSKKKKSKPYQPMAVIISPTRELAMQIHDQLQK  174

Query  70   MLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLI  128
                    V  + G +        + +  ++++ T   L+      + +  V+L     +
Sbjct  175  FAGPVGAKVACIFGGVRKDEQR-EVLKTANIVVATPGRLKD----LQNDGSVDLGKVRYL  229

Query  129  VVDECHH  135
            V+DE   
Sbjct  230  VLDEADR  236


>sp|Q54CE0|DDX17_DICDI Probable ATP-dependent RNA helicase ddx17 
OS=Dictyostelium discoideum OX=44689 GN=ddx17 PE=3 SV=1
Length=785

 Score = 126 bits (316),  Expect = 9e-29, Method: Composition-based stats.
 Identities = 39/160 (24%), Positives = 64/160 (40%), Gaps = 16/160 (10%)

Query  351  LEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSS  410
             E  E++L    S     + I+F  TR+    L   LQ                G  +  
Sbjct  613  FEKKERMLSFLGSVGRDEKVIVFAETRKGVDDLQRVLQ--------------FSGFKSIG  658

Query  411  QSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARG  470
               + +Q ++  V+ +F++G + +++AT VA  GLDI     VV Y         +   G
Sbjct  659  IHGNKSQPERDFVLSQFKNGMVPIMIATDVASRGLDIKDIKYVVNYDFPNTIEVYIHRIG  718

Query  471  R-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVA  508
            R ARA  S  ++ + T  +  L  ELI    E   +  + 
Sbjct  719  RTARAGASGVSYSLLTTDNARLANELIKVLTEAKQKIPIE  758


 Score = 63.7 bits (153),  Expect = 4e-09, Method: Composition-based stats.
 Identities = 35/137 (26%), Positives = 55/137 (40%), Gaps = 13/137 (9%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYV-------AKRHLETVDGAKVVVLVNRVHL  59
            Q +    AL+G++II    TG+GKT  A  +       A+  L   DG  V+VL     L
Sbjct  411  QSQAWPIALKGRDIIGLAKTGSGKTL-AFLLPSIVHINAQPVLREDDGPIVLVLAPTREL  469

Query  60   VTQHGEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEE  118
              Q  EE  +     + + T + G          L +  +++I T   L   L S +   
Sbjct  470  ALQIQEETNKFGGTSQISNTCVYGGASKHTQVAALKKGVEIVIATPGRLIDILESGKTN-  528

Query  119  HVELTVFSLIVVDECHH  135
               L   + +V+DE   
Sbjct  529  ---LRRVTYLVLDEADR  542


>sp|Q966L9|GLH2_CAEEL ATP-dependent RNA helicase glh-2 OS=Caenorhabditis 
elegans OX=6239 GN=glh-2 PE=1 SV=1
Length=974

 Score = 126 bits (317),  Expect = 9e-29, Method: Composition-based stats.
 Identities = 47/264 (18%), Positives = 85/264 (32%), Gaps = 56/264 (21%)

Query  269  AALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLL  328
              +    E+    L   R+    ++ +  R +DA+    D      V    +   E R  
Sbjct  688  GRIKHFCEEGTIKLDKCRF---FVLDEADRMIDAMGFGTDI--DTIVNYESMPKKENRQT  742

Query  329  ALFDD----------------------------RKNELAHLATHGPENPKLEMLEKIL--  358
             +F                                  +         + K + L +IL  
Sbjct  743  LMFSATFPDSVQEAARNHLKEGYIMLAIDKIGAANKCVLQEFEKCDRSEKKDKLLEILGI  802

Query  359  -QRQFSSSNSP-----RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQS  412
                +++  +      + I+F   R  A +L   L   Q                     
Sbjct  803  DIDSYTTEKNSEVYTKKTIVFVSQRAMADTLASILSSAQVPAIT--------------IH  848

Query  413  THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-  471
                QR++ E +++F++G+  +L+AT+VAE GLDI   + V+ Y +  N    +   GR 
Sbjct  849  GAREQRERSEALRQFRNGSKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRT  908

Query  472  ARADQSVYAFVATEGSRELKRELI  495
             R   +  A         L  EL+
Sbjct  909  GRVGNAGRATSFISEDCNLLSELV  932


 Score = 48.3 bits (113),  Expect = 2e-04, Method: Composition-based stats.
 Identities = 50/301 (17%), Positives = 98/301 (33%), Gaps = 25/301 (8%)

Query  2    ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA------------K  49
             ++ Y   +I    +G +I+    TG+GKT  AA++       +D              +
Sbjct  577  PIQQYTLPLIH---QGHDIMACAQTGSGKT--AAFLLPIMARLIDENDLNTAGEGGCYPR  631

Query  50   VVVLVNRVHLVTQHGEEFRRMLDGRWTVTT-LSGDMGPRAGFGHLARCHDLLICTAELLQ  108
             ++L     L  Q   E R+           + G +      G + +   +++ T     
Sbjct  632  CIILTPTRELTDQIYNEGRKFAYQTMMEIRPVYGGLAVGYNKGQIEKGATIIVGT----V  687

Query  109  MALTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTA  168
              +    EE  ++L      V+DE         +   +   +  +    +   Q L  +A
Sbjct  688  GRIKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDIDTIVNYESMPKKENRQTLMFSA  747

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
            +      S  + A NH+ +    L    I +   C  Q  E   +  K+  L      D 
Sbjct  748  T---FPDSVQEAARNHLKEGYIMLAIDKIGAANKCVLQEFEKCDRSEKKDKLLEILGIDI  804

Query  229  FGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN  288
                 +K  +       +    R     +          A  + G +EQR  +  LR++ 
Sbjct  805  DSYTTEKNSEVYTKKTIVFVSQRAMADTLASILSSAQVPAITIHGAREQRERSEALRQFR  864

Query  289  D  289
            +
Sbjct  865  N  865


>sp|P25888|RHLE_ECOLI ATP-dependent RNA helicase RhlE OS=Escherichia 
coli (strain K12) OX=83333 GN=rhlE PE=1 SV=3
Length=454

 Score = 123 bits (309),  Expect = 9e-29, Method: Composition-based stats.
 Identities = 66/356 (19%), Positives = 120/356 (34%), Gaps = 47/356 (13%)

Query  186  LQLCANLDTWCIMSPQNCCPQLQEHSQQP--CKQYNLCHRRSQDPFGDLLKKLMDQIHDH  243
              L A+  T    +     P LQ    +    K           P  +L  ++ + + D+
Sbjct  39   RDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDY  98

Query  244  LEMPELSRK--FGTQMYEQQVVKLSEAAALAGLQEQRVYALH-----LRRYNDALLIHDT  296
             +   +     FG      Q++KL     +      R+  L           + L++ + 
Sbjct  99   SKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEA  158

Query  297  VRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKL-----  351
             R +D +  + D   R  +TK           A F D    LA    H P   ++     
Sbjct  159  DRMLD-MGFIHDI--RRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNT  215

Query  352  --------------EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD  397
                          +   ++L       N  + ++FTRT+  A+ L   L +        
Sbjct  216  ASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKD-------  268

Query  398  IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG  457
                   G  +++   + +Q  +   +  F+ G + +LVAT +A  GLDI     VV Y 
Sbjct  269  -------GIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYE  321

Query  458  LLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQ  511
            L       V   GR  RA  +  A  +      +L R++     + +   A+   +
Sbjct  322  LPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYE  377


 Score = 54.8 bits (130),  Expect = 2e-06, Method: Composition-based stats.
 Identities = 30/137 (22%), Positives = 49/137 (36%), Gaps = 12/137 (9%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTR-AAAYVAKRHLETVDGAK------VVVLVNRVHL  59
            Q + I   LEG++++    TG GKT      + +  +     AK       ++L     L
Sbjct  28   QQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTREL  87

Query  60   VTQHGEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEE  118
              Q GE  R            + G +        L    D+L+ T   L       E + 
Sbjct  88   AAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLD----LEHQN  143

Query  119  HVELTVFSLIVVDECHH  135
             V+L    ++V+DE   
Sbjct  144  AVKLDQVEILVLDEADR  160


>sp|Q6CT49|PRP28_KLULA Pre-mRNA-splicing ATP-dependent RNA helicase 
PRP28 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 
2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 
GN=PRP28 PE=3 SV=1
Length=539

 Score = 124 bits (312),  Expect = 9e-29, Method: Composition-based stats.
 Identities = 66/373 (18%), Positives = 138/373 (37%), Gaps = 38/373 (10%)

Query  160  LPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYN  219
            LP ++ L   P     +K DG +  VL     L        Q+    + +  ++PC   +
Sbjct  194  LPILIKLHGIPPLNSITKHDGPLALVLAPTRELAQQI----QHEGQSITKLWKRPCNIVS  249

Query  220  LCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRV  279
            +         G  L+++   + D  ++   +        +  ++ L +   L   +  ++
Sbjct  250  IVG-------GHSLEEISANLRDGCDILVATPGRLLDCLDSHLLFLKQVNTLVLDEADKM  302

Query  280  YALHLR-RYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNEL  338
                   +    L   +T+     +     F           L     +    ++ K ++
Sbjct  303  IDFGFEDQLTTILAKTETISNRQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEESKPKI  362

Query  339  AHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI  398
              +  + P+    E   KIL + F  +     IIF   +++A  L   L++         
Sbjct  363  KQIVRYVPD---EEEKLKILVKDFLPNYKAPIIIFINYKRTADWLFDKLRE------ARF  413

Query  399  RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL  458
            RA  L G+         +Q  ++  +   ++G +++L+AT VA  G+DIP+ ++VV    
Sbjct  414  RATTLHGSK--------SQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQF  465

Query  459  LTNEISMVQARGR-ARADQSVYA--FVATEGSRELKRELINEAL------ETLMEQAVAA  509
              +  S V   GR  RA ++  A  F+  E       +L +         E  + +   +
Sbjct  466  PKSFDSFVHRVGRTGRAGKTGTALTFLTEEEDHSAMAKLFDYVKKNDFTGENYISKEAMS  525

Query  510  VQKMDQAEYQAKI  522
               +D++ Y+  I
Sbjct  526  KYNVDKSSYKPII  538


 Score = 55.2 bits (131),  Expect = 1e-06, Method: Composition-based stats.
 Identities = 26/125 (21%), Positives = 41/125 (33%), Gaps = 16/125 (13%)

Query  21   IIWLPTGAGKTRAAAYVA---------KRHLETVDGAKVVVLVNRVHLVTQ-HGE--EFR  68
            I    TG+GKT A                 +   DG   +VL     L  Q   E     
Sbjct  179  IGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLALVLAPTRELAQQIQHEGQSIT  238

Query  69   RMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLI  128
            ++      + ++ G         +L    D+L+ T   L   L S      + L   + +
Sbjct  239  KLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRLLDCLDSHL----LFLKQVNTL  294

Query  129  VVDEC  133
            V+DE 
Sbjct  295  VLDEA  299


>sp|P42305|DBPA_BACSU ATP-dependent RNA helicase DbpA OS=Bacillus 
subtilis (strain 168) OX=224308 GN=dbpA PE=1 SV=2
Length=479

 Score = 123 bits (309),  Expect = 1e-28, Method: Composition-based stats.
 Identities = 73/419 (17%), Positives = 141/419 (34%), Gaps = 63/419 (15%)

Query  228  PFGDLLKKLMDQIHDH--LEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR  285
            P  +L  ++ + I +    +  + +  FG   +++Q  +L + + +      RV   H+ 
Sbjct  78   PTRELAVQVKEDITNIGRFKRIKATAVFGKSSFDKQKAELKQKSHIVVGTPGRVLD-HIE  136

Query  286  RYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNELAHL  341
            +    L     +  +D    + +    E V          R   LF         +L+  
Sbjct  137  KGTLPLDRLSYL-VIDEADEMLNMGFIEQVEAIIKHLPTERTTMLFSATLPQDIEKLSRQ  195

Query  342  ATHGPENPKL-------------------EMLEKILQRQFSSSNSPRGIIFTRTRQSAHS  382
                PE+ ++                   E    +L+    + N    IIF RT++  + 
Sbjct  196  YMQNPEHIEVKAAGLTTRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQ  255

Query  383  LLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAE  442
            L   L                +G         M Q D+ +V+ +F+ G    LVAT VA 
Sbjct  256  LTDELDD--------------LGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAA  301

Query  443  EGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALET  501
             G+DI + ++V+ Y L   + S V   GR  RA     A          KR L +  +E 
Sbjct  302  RGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFE--KRFLAD--IEE  357

Query  502  LMEQAVAAVQKMDQAEYQAKIRDL-----QQAALTKRAAQAAQRE------NQRQQFPVE  550
             +   +  ++   Q E   K  +       +    K  ++   ++      N  ++  + 
Sbjct  358  YIGFEIQKIEAPSQEEVARKKPEFLAKLNDRPESKKDKSEELNKDIMKLYFNGGKKKKIR  417

Query  551  HVQLLCINCMVAVGHGSDLRKVEGTHHVNVNPNFSNYYNVSRDPVVINKVFKDWKPGGV  609
             V  +     +      D+  +       ++          + P V+ KV K+    G 
Sbjct  418  AVDFVGTIAKIDGVSADDIGII-----TIMDNASYVEILNGKGPHVL-KVMKNTTVKGK  470


 Score = 61.0 bits (146),  Expect = 2e-08, Method: Composition-based stats.
 Identities = 27/131 (21%), Positives = 49/131 (37%), Gaps = 10/131 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTR---AAAYVAKRHLETVDGAKVVVLVNRVHLVTQH  63
            Q  VI  ALE K++++   TG+GKT              E     + ++L     L  Q 
Sbjct  29   QQSVIPAALERKDLVVKSQTGSGKTASFGIPLCELANWDENKP--QALILTPTRELAVQV  86

Query  64   GEEFRRMLDGRW-TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
             E+   +   +    T + G          L +   +++ T   +   +    E+  + L
Sbjct  87   KEDITNIGRFKRIKATAVFGKSSFDKQKAELKQKSHIVVGTPGRVLDHI----EKGTLPL  142

Query  123  TVFSLIVVDEC  133
               S +V+DE 
Sbjct  143  DRLSYLVIDEA  153


>sp|Q9P7C7|PRP11_SCHPO Pre-mRNA-processing ATP-dependent RNA helicase 
prp11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 
24843) OX=284812 GN=prp11 PE=1 SV=1
Length=1014

 Score = 126 bits (316),  Expect = 1e-28, Method: Composition-based stats.
 Identities = 67/394 (17%), Positives = 127/394 (32%), Gaps = 54/394 (14%)

Query  212  QQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAA  269
            Q+P K           P  +L  ++  +    L++  +     +G    + Q+  L   A
Sbjct  483  QRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGA  542

Query  270  ALAGLQEQRVYALHLRRYNDALLIHDTVRAV-DALAALQDFYHREHVTKTQILCAERRLL  328
             +      R+  +          +H     V D    + D      V +        R  
Sbjct  543  EIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNIRPDRQT  602

Query  329  ALFDDR---------------------------KNELAHLATHGPENPKLEMLEKILQRQ  361
             LF                               +E+  +    PE  K   L ++L   
Sbjct  603  VLFSATFPRAMEALARKVLKKPVEITVGGRSVVASEVEQIVEVRPEESKFSRLLELLGEL  662

Query  362  FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ  421
            +++    R ++F   ++SA +LL  L ++              G  ++S      Q D+ 
Sbjct  663  YNNQLDVRTLVFVDRQESADALLSDLMKR--------------GYTSNSIHGGKDQHDRD  708

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYA  480
              I  ++ G  ++L+ATSV   GLD+    +VV Y    +    V   GR  RA  +  A
Sbjct  709  STISDYKAGVFDVLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVA  768

Query  481  FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR  540
                   +E     I +AL+   +     +Q +     +      ++AA      +   R
Sbjct  769  VTFITPEQEKYAVDIAKALKMSKQPVPKELQTLASQFLEKVKAGKEKAAGGGFGGKGLSR  828

Query  541  ENQRQQFPVEHVQLLCINCMVAVGHGSDLRKVEG  574
             ++ +    +  +           +G D   VE 
Sbjct  829  LDETRNAERKMQR---------KAYGEDEEDVET  853


 Score = 56.3 bits (134),  Expect = 8e-07, Method: Composition-based stats.
 Identities = 27/137 (20%), Positives = 50/137 (36%), Gaps = 10/137 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYV-AKRHLETVDGAK------VVVLVNRVHL  59
            Q + I     G+++I    TG+GKT  A  +   RH++     K       +++     L
Sbjct  445  QAQAIPAITSGRDVIGVAKTGSGKT-IAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTREL  503

Query  60   VTQHGEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEE  118
              Q   E +  L           G    +     L R  ++++CT   +   L++     
Sbjct  504  AVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEIVVCTPGRMIDVLSANAGR-  562

Query  119  HVELTVFSLIVVDECHH  135
               L   + +V+DE   
Sbjct  563  VTNLHRCTYLVLDEADR  579


>sp|P34689|GLH1_CAEEL ATP-dependent RNA helicase glh-1 OS=Caenorhabditis 
elegans OX=6239 GN=glh-1 PE=1 SV=3
Length=763

 Score = 126 bits (315),  Expect = 1e-28, Method: Composition-based stats.
 Identities = 47/264 (18%), Positives = 85/264 (32%), Gaps = 56/264 (21%)

Query  269  AALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLL  328
              +    E+    L   R+    ++ +  R +DA+    D      V    +   E R  
Sbjct  477  GRIKHFCEEGTIKLDKCRF---FVLDEADRMIDAMGFGTDI--ETIVNYDSMPRKENRQT  531

Query  329  ALFDD----------------------------RKNELAHLATHGPENPKLEMLEKIL--  358
             +F                                  +         + K + L ++L  
Sbjct  532  LMFSATFPDSVQEAARAFLRENYVMIAIDKIGAANKCVLQEFERCERSEKKDKLLELLGI  591

Query  359  -QRQFSSSNSP-----RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQS  412
                +++  S      + ++F   R  A +L   L   Q                     
Sbjct  592  DIDSYTTEKSAEVYTKKTMVFVSQRAMADTLASILSSAQVPAIT--------------IH  637

Query  413  THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-  471
                QR++ E +++F++G+  +L+AT+VAE GLDI   + V+ Y +  N    +   GR 
Sbjct  638  GAREQRERSEALRQFRNGSKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRT  697

Query  472  ARADQSVYAFVATEGSRELKRELI  495
             R   S  A         L  EL+
Sbjct  698  GRVGNSGRATSFISEDCSLLSELV  721


 Score = 44.4 bits (103),  Expect = 0.003, Method: Composition-based stats.
 Identities = 45/301 (15%), Positives = 95/301 (32%), Gaps = 25/301 (8%)

Query  2    ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA------------K  49
             ++ Y   ++    +   I+    TG+GKT  AA++       +D              +
Sbjct  366  PIQQYALPLVHQGYD---IMACAQTGSGKT--AAFLLPIMTRLIDDNNLNTAGEGGCYPR  420

Query  50   VVVLVNRVHLVTQHGEEFRRMLDGR-WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQ  108
             ++L     L  Q   E R+        +  + G +      G + +   +++ T     
Sbjct  421  CIILTPTRELADQIYNEGRKFAYQTMMEIKPVYGGLAVGYNKGQIEKGATIIVGT----V  476

Query  109  MALTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTA  168
              +    EE  ++L      V+DE         +   +   +       +   Q L  +A
Sbjct  477  GRIKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDIETIVNYDSMPRKENRQTLMFSA  536

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
            +      S  + A   + +    +    I +   C  Q  E  ++  K+  L      D 
Sbjct  537  T---FPDSVQEAARAFLRENYVMIAIDKIGAANKCVLQEFERCERSEKKDKLLELLGIDI  593

Query  229  FGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN  288
                 +K  +       +    R     +          A  + G +EQR  +  LR++ 
Sbjct  594  DSYTTEKSAEVYTKKTMVFVSQRAMADTLASILSSAQVPAITIHGAREQRERSEALRQFR  653

Query  289  D  289
            +
Sbjct  654  N  654


>sp|Q6FM43|PRP28_CANGA Pre-mRNA-splicing ATP-dependent RNA helicase 
PRP28 OS=Candida glabrata (strain ATCC 2001 / BCRC 20586 
/ JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=PRP28 
PE=3 SV=1
Length=582

 Score = 124 bits (312),  Expect = 1e-28, Method: Composition-based stats.
 Identities = 70/379 (18%), Positives = 143/379 (38%), Gaps = 53/379 (14%)

Query  145  IMSQYLELKLQRAQPLPQ-VLGL--TAS--------PGTGGASKLDGAINHVLQLCANLD  193
            I    +   +   + +P+ +LG+  T S        P       L     ++  L   L 
Sbjct  197  IQRITIPNAISSNKSVPRDILGIASTGSGKTLAFSIPILARLDALPARPVNLKTLDGPLA  256

Query  194  TWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPF----GDLLKKLMDQIHDHLEMPEL  249
               + + +    Q+ +   +        ++++ +      G  +  +   + +  ++   
Sbjct  257  LVLVPT-RELAQQISQEINR--LLSAWENKKNLNAVSIVGGHSMSDISHTLRNGCDILIA  313

Query  250  SRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDF  309
            +      + +  +V L++  +L   +  R+  L       ++L H      D LAA Q  
Sbjct  314  TPGRLLDVLDNHLVVLNKIQSLVLDEADRMIDLGFEDQMKSILSHLMA---DELAARQTM  370

Query  310  YHREHVTKTQILCAERRLL--------ALFDDRKNELAHLATH-GPENPKLEMLEKILQR  360
                 ++ +    A+  L         + +D  K  +  +  H G ++ KL  L+  L +
Sbjct  371  LFTATLSSSVESIAKGYLKNPLHVSVGSRWDSDKPLITQVVRHTGDDDKKLSFLKDDLIK  430

Query  361  QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ  420
                 N    IIF   +++A  L L L  +  + T+                   +Q  +
Sbjct  431  -----NGLPAIIFINYKETADWLTLRLSDRFNIVTL---------------HGSKSQSQR  470

Query  421  QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVY  479
            +  IQK + GT N+L+AT+VA  GLDIP   +VV + +       +   GR  RA ++  
Sbjct  471  ESAIQKLKSGTANVLIATNVAARGLDIPDVALVVNFQMSKKFDDYIHRIGRTGRAGKTGI  530

Query  480  A--FVATEGSRELKRELIN  496
            A  ++  E   +L ++L  
Sbjct  531  AVTYLTGEEDPQLIKQLAK  549


 Score = 49.0 bits (115),  Expect = 1e-04, Method: Composition-based stats.
 Identities = 63/369 (17%), Positives = 113/369 (31%), Gaps = 38/369 (10%)

Query  26   TGAGKTR---AAAYVAKR-------HLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRW  75
            TG+GKT                   +L+T+DG   +VLV    L  Q  +E  R+L    
Sbjct  222  TGSGKTLAFSIPILARLDALPARPVNLKTLDGPLALVLVPTRELAQQISQEINRLLSAWE  281

Query  76   TVTTLS-----GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV  130
                L+     G          L    D+LI T   L   L +      V L     +V+
Sbjct  282  NKKNLNAVSIVGGHSMSDISHTLRNGCDILIATPGRLLDVLDNHL----VVLNKIQSLVL  337

Query  131  DECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCA  190
            DE      D  +   M   L   +       Q +  TA+  +   S   G + + L +  
Sbjct  338  DEADRMI-DLGFEDQMKSILSHLMADELAARQTMLFTATLSSSVESIAKGYLKNPLHV--  394

Query  191  NLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELS  250
            ++ +            ++       K   L     ++    ++     +  D L    LS
Sbjct  395  SVGSRWDSDKPLITQVVRHTGDDDKKLSFLKDDLIKNGLPAIIFINYKETADWL-TLRLS  453

Query  251  RKF--------GTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDA  302
             +F         +Q   +  ++  ++     L    V A  L   + AL+++        
Sbjct  454  DRFNIVTLHGSKSQSQRESAIQKLKSGTANVLIATNVAARGLDIPDVALVVN-----FQM  508

Query  303  LAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATH--GPENPKLEMLEKILQR  360
                 D+ HR   T               ++    +  LA +    +  K     +   +
Sbjct  509  SKKFDDYIHRIGRTGRAGKTGIAVTYLTGEEDPQLIKQLAKYVKDVDPNKENDFPEECAK  568

Query  361  QFSSSNSPR  369
             F   +  R
Sbjct  569  HFGIVSETR  577


>sp|Q54QS3|DDX3_DICDI Probable ATP-dependent RNA helicase ddx3 
OS=Dictyostelium discoideum OX=44689 GN=ddx3 PE=3 SV=1
Length=712

 Score = 125 bits (314),  Expect = 1e-28, Method: Composition-based stats.
 Identities = 57/334 (17%), Positives = 119/334 (36%), Gaps = 58/334 (17%)

Query  228  PFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR  285
            P  +L +++ D+ +       +S    +G      Q+ +L     +      R+  L +R
Sbjct  338  PTRELAQQIFDEANKFSYGSPVSSVVIYGGAEVFHQINELDRGCDILVATTGRLVDLLMR  397

Query  286  RYND-----ALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFD----DRKN  336
                      L++ +  R +D     Q    R+ +++  +     R   +F      +  
Sbjct  398  GRVSLSKIKYLVLDEADRMLDMGFEPQ---IRQIISEFDMPGCRDRQTLMFSATFPKQIQ  454

Query  337  ELAHLATHGPENPKLEMLEK-------------------ILQRQFSSSNSPRGIIFTRTR  377
             LA    +     K+ ++                     +L       +    +IF  T+
Sbjct  455  NLAADFLYNYIFLKVGVVGTTQNITQRIEYVVEEDKNSYLLDYLSGLKSDGLCLIFVETK  514

Query  378  QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA  437
            +S  +L  +L Q+    T                   +TQ +++  +Q F+      LVA
Sbjct  515  RSCDTLTYFLNQRNFPTT--------------CIHGDLTQPERENALQSFRSFATPFLVA  560

Query  438  TSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELI  495
            T +A  GL I + N+V+ + L T+    V   GR  RA +   A     E ++ +  EL+
Sbjct  561  TDIASRGLHIGNVNLVINFDLPTDIHIYVHRIGRTGRAGKKGLAISFFNEKNKPVGAELL  620

Query  496  NEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAA  529
                  LM+ +   +       ++  + +L+ + 
Sbjct  621  -----KLMKASNQDIPDW----FEKMVHNLRMSK  645


 Score = 50.2 bits (118),  Expect = 6e-05, Method: Composition-based stats.
 Identities = 41/233 (18%), Positives = 78/233 (33%), Gaps = 36/233 (15%)

Query  15   LEGKNIIIWLPTGAGKTRAAAY---VAKRHLETVDGA--------------KVVVLVNRV  57
            L+ ++++    TG+GKT AA     ++   L+    A              + +VL    
Sbjct  282  LKNRDLMACAQTGSGKT-AAFLFPIISGILLDGAPEAPPAYKPGVPRAACPRALVLAPTR  340

Query  58   HLVTQHGEEFRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE  116
             L  Q  +E  +       +   + G          L R  D+L+ T   L   L     
Sbjct  341  ELAQQIFDEANKFSYGSPVSSVVIYGGAEVFHQINELDRGCDILVATTGRLVDLLM----  396

Query  117  EEHVELTVFSLIVVDECHH---THKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS-PGT  172
               V L+    +V+DE         +     I+S++     +  Q     L  +A+ P  
Sbjct  397  RGRVSLSKIKYLVLDEADRMLDMGFEPQIRQIISEFDMPGCRDRQT----LMFSATFPKQ  452

Query  173  GGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRS  225
                  D   N++      L    + + QN   +++   ++    Y L +   
Sbjct  453  IQNLAADFLYNYIF-----LKVGVVGTTQNITQRIEYVVEEDKNSYLLDYLSG  500


>sp|Q6C799|DBP8_YARLI ATP-dependent RNA helicase DBP8 OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DBP8 PE=3 
SV=1
Length=442

 Score = 122 bits (306),  Expect = 1e-28, Method: Composition-based stats.
 Identities = 47/257 (18%), Positives = 85/257 (33%), Gaps = 18/257 (7%)

Query  304  AALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFS  363
            A + D          +        +A      + L       P   +   L  IL     
Sbjct  188  ATVTDAVRALKDRTGEKGPPFIHEIASDIAVPSTLTQSYLFLPGYVREAYLWAILTH--P  245

Query  364  SSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEV  423
             +     IIF    Q+A +L   L                     +S  + M Q+++   
Sbjct  246  DNEKKSAIIFVNRTQTAETLRRMLMALD--------------VKTASLHSEMRQQERVNA  291

Query  424  IQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-  481
            + +F+     +LVAT VA  GLDIP   +V+ + L  +    +   GR ARA +   +  
Sbjct  292  LGRFRAQAARVLVATDVASRGLDIPTVEMVINFDLPADADDYIHRVGRTARAGRKGQSVS  351

Query  482  VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRE  541
            + TE        +       + +  +    K+ +          +QA L   A    +R+
Sbjct  352  LVTERDVTRVTNIEERVGTKMEKYDLIEDDKVVEEYLTPASTAKRQAVLDMEAENFGERK  411

Query  542  NQRQQFPVEHVQLLCIN  558
              +++     V +   N
Sbjct  412  RIQRKKAGLDVDMKSKN  428


 Score = 47.1 bits (110),  Expect = 4e-04, Method: Composition-based stats.
 Identities = 27/123 (22%), Positives = 43/123 (35%), Gaps = 2/123 (2%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKV-VVLVNRVHLVTQHGEEFRRML-D  72
            ++GK+ I    TG+GKT A A                +VL     L  Q  E+F  +  +
Sbjct  36   MKGKDCIGGARTGSGKTIAFAAPMLAEWSKDPCGIFGLVLTPTRELAIQIAEQFTALGAN  95

Query  73   GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDE  132
                V  + G +        L +    +I T   L   + S  E+          +V+DE
Sbjct  96   MNIRVALIYGGVDMVKQSLELQKMPHFVIATPGRLADHIRSSGEDTIRGFRRVRYVVMDE  155

Query  133  CHH  135
               
Sbjct  156  ADR  158


>sp|Q65N62|CSHA_BACLD DEAD-box ATP-dependent RNA helicase CshA 
OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 
2505 / CCUG 7422 / NBRC 12200 / NCIMB 9375 / NCTC 10341 / NRRL 
NRS-1264 / Gibson 46) OX=279010 GN=cshA PE=3 SV=1
Length=487

 Score = 123 bits (308),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 60/391 (15%), Positives = 120/391 (31%), Gaps = 57/391 (15%)

Query  168  ASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQD  227
            A+P       L  A   V+                   ++   S           R    
Sbjct  26   ATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIPLVEKINPESPNIQAIVIAPTRELAI  85

Query  228  PFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR-  286
               + L K+        +   +   +G Q   +Q+  L +   +      R+     RR 
Sbjct  86   QVSEELYKI-----GQDKRARVLPIYGGQDIGRQIRALKKNPHIIVGTPGRLLDHINRRT  140

Query  287  ------------YNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALF---  331
                          D +L    +  ++++ +     H+  +    +    +R+   F   
Sbjct  141  MRLQTVNTVVLDEADEMLNMGFIEDIESILSNVPAEHQTLLFSATMPAPIKRIAERFMTN  200

Query  332  ---------DDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHS  382
                     +   + +        E  K + L ++L  Q    +    I+F RT++    
Sbjct  201  PEHVKVKAKEMTVSNIQQFYLEVHERKKFDTLTRLLDIQ----SPELAIVFGRTKRRVDE  256

Query  383  LLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAE  442
            L   L               L G         +TQ  +   ++KF+ G + +LVAT VA 
Sbjct  257  LTEALN--------------LRGYTAEGIHGDLTQAKRMVALRKFKQGAIEVLVATDVAA  302

Query  443  EGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVAT--------EGSRELKRE  493
             GLDI     V  + +  +  S V   GR  RA ++  A                +  + 
Sbjct  303  RGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKDMLRAIEQTTKR  362

Query  494  LINEALETLMEQAVAAVQKMDQAEYQAKIRD  524
             ++      +++A+   Q++     +  I +
Sbjct  363  KMDRMKAPTLDEAIEGQQQVTVDRIRTIIEE  393


 Score = 48.6 bits (114),  Expect = 2e-04, Method: Composition-based stats.
 Identities = 27/129 (21%), Positives = 48/129 (37%), Gaps = 6/129 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q + I   L  K++I    TG GKT A    + ++        + +V+     L  Q  E
Sbjct  30   QAQTIPLGLANKDVIGQAQTGTGKTAAFGIPLVEKINPESPNIQAIVIAPTRELAIQVSE  89

Query  66   EFRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
            E  ++  D R  V  + G          L +   +++ T   L   +        + L  
Sbjct  90   ELYKIGQDKRARVLPIYGGQDIGRQIRALKKNPHIIVGTPGRLLDHINRRT----MRLQT  145

Query  125  FSLIVVDEC  133
             + +V+DE 
Sbjct  146  VNTVVLDEA  154


>sp|Q8Y8N0|CSHA_LISMO ATP-dependent RNA helicase CshA OS=Listeria 
monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) 
OX=169963 GN=cshA PE=2 SV=1
Length=520

 Score = 123 bits (309),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 66/356 (19%), Positives = 126/356 (35%), Gaps = 45/356 (13%)

Query  208  QEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHD--HLEMPELSRKFGTQMYEQQVVKL  265
                 +  ++ N        P  +L  ++ ++++   + +   +   +G     +Q+  L
Sbjct  58   LPMIHKIDQKSNNVQALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSL  117

Query  266  SEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAER  325
             +   +      R+   H+ R    L   +T+   +A   L   +  +  T  + + AER
Sbjct  118  KKNPQIVVGTPGRILD-HINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAER  176

Query  326  RLL---ALFDDRKNELAHLATHGPE--NPKLEMLEKILQRQFSSSNSPR-----------  369
            + L   A   D    +     H PE    K + +  +L  QF      +           
Sbjct  177  QTLLFSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLD  236

Query  370  ------GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEV  423
                   I+F RT++    L   L               + G         +TQ  +  V
Sbjct  237  VQAPELAIVFGRTKRRVDELSRALD--------------MRGYVAEGIHGDLTQAKRMSV  282

Query  424  IQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFV  482
            ++KF++G +++LVAT VA  GLDI     V  Y +  +  S V   GR  RA +   A  
Sbjct  283  LRKFKEGKIDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAIT  342

Query  483  ATEGSRELKRELINEALETLMEQAVAAVQKMDQA---EYQAKIRDLQQAALTKRAA  535
              +        ++ E  +  M+         D+A   + +     +Q+A   +  A
Sbjct  343  FVQPREMGYLRIVEETTKKRMQ--PLQAPTWDEAFAGQLRVATEKIQEAITEENLA  396


 Score = 53.3 bits (126),  Expect = 5e-06, Method: Composition-based stats.
 Identities = 24/122 (20%), Positives = 46/122 (38%), Gaps = 6/122 (5%)

Query  14   ALEGKNIIIWLPTGAGKTRAAAYVAKRHLETV-DGAKVVVLVNRVHLVTQHGEEFRRML-  71
             LEGK++I    TG GKT A        ++   +  + +++     L  Q  EE  ++  
Sbjct  36   GLEGKDLIGQAQTGTGKTAAFGLPMIHKIDQKSNNVQALIIAPTRELAIQVSEELYKLSY  95

Query  72   DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVD  131
            D    V  + G          L +   +++ T   +   +        ++L     +V+D
Sbjct  96   DKHVRVLAVYGGSDISRQIRSLKKNPQIVVGTPGRILDHINRRT----LKLDHVETLVLD  151

Query  132  EC  133
            E 
Sbjct  152  EA  153


>sp|P09052|VASA1_DROME ATP-dependent RNA helicase vasa OS=Drosophila 
melanogaster OX=7227 GN=vas PE=1 SV=3
Length=661

 Score = 124 bits (312),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 35/150 (23%), Positives = 63/150 (42%), Gaps = 22/150 (15%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K   L +IL  Q         I+F  T++ A  L  +L +++   T              
Sbjct  477  KRSKLIEILSEQADG-----TIVFVETKRGADFLASFLSEKEFPTT--------------  517

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
            S      Q  +++ ++ F++G++ +L+ATSVA  GLDI +   V+ Y + +     V   
Sbjct  518  SIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRI  577

Query  470  GRARA---DQSVYAFVATEGSRELKRELIN  496
            GR      +    +F   E  R +  +L+ 
Sbjct  578  GRTGRVGNNGRATSFFDPEKDRAIAADLVK  607


 Score = 52.9 bits (125),  Expect = 9e-06, Method: Composition-based stats.
 Identities = 54/338 (16%), Positives = 116/338 (34%), Gaps = 35/338 (10%)

Query  16   EGKNIIIWLPTGAGKTRAAAYVAK-------RHLETVDGAKVVVLVNRVHLVTQHGEEFR  68
             G++++    TG+GKT A               LE     +VV++     L  Q   E R
Sbjct  281  SGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRP-QVVIVSPTRELAIQIFNEAR  339

Query  69   RMLDGRW-TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSL  127
            +     +  +  + G    R     + R   ++I T   L   +    +   +       
Sbjct  340  KFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFV----DRTFITFEDTRF  395

Query  128  IVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQ  187
            +V+DE      D  ++  M + +     R  P  Q L  +A+            + + + 
Sbjct  396  VVLDEADR-MLDMGFSEDMRRIMTHVTMR--PEHQTLMFSATFPEEIQRMAGEFLKNYVF  452

Query  188  LCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMP  247
            +   +        +    ++ +++++      L    S+   G ++     +  D L   
Sbjct  453  VAIGIVGGACSDVKQTIYEVNKYAKR----SKLIEILSEQADGTIVFVETKRGADFLASF  508

Query  248  ELSRKFGT--------QMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRA  299
               ++F T        Q   +Q ++  +  ++  L    V +  L   N   +I+     
Sbjct  509  LSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVIN-----  563

Query  300  VDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNE  337
             D  + + D+ HR  + +T  +    R  + FD  K+ 
Sbjct  564  YDMPSKIDDYVHR--IGRTGRVGNNGRATSFFDPEKDR  599


>sp|A5DQF1|RRP3_PICGU ATP-dependent rRNA helicase RRP3 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=RRP3 PE=3 
SV=2
Length=475

 Score = 123 bits (308),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 64/360 (18%), Positives = 119/360 (33%), Gaps = 49/360 (14%)

Query  216  KQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKF---GTQMYEQQVVKLSEAAALA  272
            +     +     P  +L  ++  +  D L      R     G      Q   L     + 
Sbjct  128  EAQRPYYALVLAPTRELAYQI-KETFDALGSGMGVRSVCIVGGMDMMDQARDLMRKPHIL  186

Query  273  GLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFD  332
                 R+   HL       L       +D    L D      + K   +   +R   LF 
Sbjct  187  VATPGRI-MDHLENTKGFSLKSLQYLVMDEADRLLDMDFGPALDKILKVIPTKRTTYLFS  245

Query  333  ----DRKNELAHLATHGPE----NPKLEMLEKILQRQFSSSNSPR---------------  369
                ++  +L   + H P     + K +  + ++Q     S+  +               
Sbjct  246  ATMTNKIAKLQRASLHEPVKVAVSNKYQTADNLVQSMMLVSDGYKNTFLIHLLNEFMGKS  305

Query  370  GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD  429
             I+FTRT        L                 ++G         +TQ  +   + KF+ 
Sbjct  306  IIVFTRTCAHTQRSTLL--------------ARILGFSAVPLHGQLTQSQRLGSLNKFKS  351

Query  430  GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGS  487
            G  N+L+AT VA  GLDIP  +VV+ Y + T+  + +   GR ARA +S  +  + T+  
Sbjct  352  GKANILIATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGKSGKSISLVTQYD  411

Query  488  RELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQF  547
             E     +   +E+++   +       +    A    + +A+           E + ++ 
Sbjct  412  LE-----MYLRIESVLGFKLPKDPSPPRDVLNALHVHVDRASAEAIKQTKDFHEKRTKKK  466


 Score = 57.5 bits (137),  Expect = 2e-07, Method: Composition-based stats.
 Identities = 33/124 (27%), Positives = 47/124 (38%), Gaps = 5/124 (4%)

Query  14   ALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLD  72
            ALEGK+II    TG+GKT A A  + +   E       +VL     L  Q  E F  +  
Sbjct  98   ALEGKDIIGLAQTGSGKTAAFAIPILQSLWEAQRPYYALVLAPTRELAYQIKETFDALGS  157

Query  73   G-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVD  131
            G       + G M        L R   +L+ T   +   L + +      L     +V+D
Sbjct  158  GMGVRSVCIVGGMDMMDQARDLMRKPHILVATPGRIMDHLENTKG---FSLKSLQYLVMD  214

Query  132  ECHH  135
            E   
Sbjct  215  EADR  218


>sp|A3LRW2|DBP3_PICST ATP-dependent RNA helicase DBP3 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=DBP3 PE=3 SV=1
Length=526

 Score = 123 bits (309),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 42/195 (22%), Positives = 79/195 (41%), Gaps = 23/195 (12%)

Query  350  KLEMLEKILQRQFSSSN-SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN  408
            K + L  +L++  S S  + + +IF   ++ A  +   L++                   
Sbjct  344  KEKKLLGLLRQYQSGSKKNDKVLIFALYKKEATRIEGLLRRNS--------------YNV  389

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
            ++    ++Q+ +   +  F+ G  +LL+AT VA  GLDIP+  VV+           V  
Sbjct  390  AAIHGDLSQQQRTNALNSFKKGESSLLLATDVAARGLDIPNVKVVINLTFPLTVEDYVHR  449

Query  469  RGR-ARADQSVYAF-VATEGSRELKRELI------NEALETLMEQAVAAVQKMDQAEYQA  520
             GR  RA Q+  A  + TE  + L   L+      N+ +   + +     +K   + Y A
Sbjct  450  IGRTGRAGQTGTAHTLFTEHEKHLSGALMNILRGANQPVPDELLKFGGHTKKKAHSAYGA  509

Query  521  KIRDLQQAALTKRAA  535
              +D+      K+  
Sbjct  510  FFKDVDMTKTAKKIK  524


 Score = 50.6 bits (119),  Expect = 4e-05, Method: Composition-based stats.
 Identities = 23/123 (19%), Positives = 41/123 (33%), Gaps = 6/123 (5%)

Query  15   LEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVV-LVNRVHLVTQHGEEFRRMLD  72
            L GK++I    TG+GKT A         L        V+ +     L +Q  +    +  
Sbjct  151  LSGKDVIGVAETGSGKTFAFGVPAINNILTLGKSGLSVLCISPTRELASQIYDNLVDLTS  210

Query  73   GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDE  132
                         P+       +  ++++ T   L   +    E+  V L     +V+DE
Sbjct  211  NTNVKCVCVYGGVPKHDQVKNLKNANVVVATPGRLLDLI----EDGAVNLGTVDYLVLDE  266

Query  133  CHH  135
               
Sbjct  267  ADR  269


>sp|Q9ZRZ8|RH28_ARATH DEAD-box ATP-dependent RNA helicase 28 OS=Arabidopsis 
thaliana OX=3702 GN=RH28 PE=2 SV=1
Length=789

 Score = 125 bits (313),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 77/386 (20%), Positives = 138/386 (36%), Gaps = 46/386 (12%)

Query  186  LQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLE  245
              LCA+  T    +     P L+    +P K+          P  +L  ++   I +  +
Sbjct  205  RDLCASAITGSGKTAAFALPTLERLLFRP-KRVFATRVLILTPTRELAVQIHSMIQNLAQ  263

Query  246  MPELS--RKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDAL  303
              ++      G     +Q V L     +      R+   HLR      L    V  +D  
Sbjct  264  FTDIKCGLIVGGLSVREQEVVLRSMPDIVVATPGRMID-HLRNSMSVDLDDLAVLILDEA  322

Query  304  AALQDFYHREHVTKTQILCAERRLLALFD----DRKNELAHLATHGP-------------  346
              L        +T+   LC +RR   LF     +   EL  L+ + P             
Sbjct  323  DRLLQTGFATEITELVRLCPKRRQTMLFSATMTEEVKELVKLSLNKPLRLSADPSARRPP  382

Query  347  ----ENPKLEMLEK-----ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD  397
                E  ++    +     +L    + +   + IIF+ T+Q+AH L +            
Sbjct  383  GLTEEVVRIRRTREANQEAVLLSLCTRTFKSKVIIFSGTKQAAHRLKILFG---------  433

Query  398  IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG  457
                 L G   +    ++TQ  + + ++ F+   ++ L+AT VA  GLDI     V+ Y 
Sbjct  434  -----LAGLKAAELHGNLTQAQRLDSLELFRKQEVDFLIATDVAARGLDIIGVQTVINYA  488

Query  458  LLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQ  515
                  S V   GR ARA +  YA    T+  R L + +  +    L  + +     +  
Sbjct  489  CPREIDSYVHRVGRTARAGREGYAVTFVTDSDRSLLKVIAKKVGSKLKSRVIPEQSIVKW  548

Query  516  AEYQAKIRDLQQAALTKRAAQAAQRE  541
            ++   ++ D   A ++    + A R+
Sbjct  549  SQIIDEMEDQYSAVISAERDERALRK  574


 Score = 54.8 bits (130),  Expect = 2e-06, Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 67/201 (33%), Gaps = 13/201 (6%)

Query  14   ALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA----KVVVLVNRVHLVTQHGEEFRR  69
            AL G+++     TG+GKT A A      L          +V++L     L  Q     + 
Sbjct  201  ALTGRDLCASAITGSGKTAAFALPTLERLLFRPKRVFATRVLILTPTRELAVQIHSMIQN  260

Query  70   MLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLI  128
            +          + G +  R     L    D+++ T   +   L +      V+L   +++
Sbjct  261  LAQFTDIKCGLIVGGLSVREQEVVLRSMPDIVVATPGRMIDHLRNSMS---VDLDDLAVL  317

Query  129  VVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQL  188
            ++DE     +      I         +R   L      +A+        +  ++N  L+L
Sbjct  318  ILDEADRLLQTGFATEITELVRLCPKRRQTML-----FSATMTEEVKELVKLSLNKPLRL  372

Query  189  CANLDTWCIMSPQNCCPQLQE  209
             A+              +++ 
Sbjct  373  SADPSARRPPGLTEEVVRIRR  393


>sp|Q84UQ1|RH42_ORYSJ DEAD-box ATP-dependent RNA helicase 42 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os08g0159900 PE=2 
SV=1
Length=1049

 Score = 125 bits (314),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 86/220 (39%), Gaps = 19/220 (9%)

Query  335  KNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQ  394
              ++  L    PEN +   L ++L   F   +  + ++F  ++    SLL  L Q     
Sbjct  642  NKDITQLVEVRPENERFFRLLELLGEWF---DKGKILVFVHSQDKCDSLLKDLFQ-----  693

Query  395  TVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV  454
                      G    S      Q D++  +  F+    +LL+ATSVA  GLD+    +VV
Sbjct  694  ---------HGYPCLSLHGGKDQTDRESTLADFKSNVCSLLIATSVAARGLDVKELELVV  744

Query  455  RYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM  513
             Y +  +    V   GR  RA +  +A        E     + +ALE L EQAV    K 
Sbjct  745  NYDVPNHYEDYVHRVGRTGRAGRKGFAVTFISEEEERYAPDLVKALE-LSEQAVPEDLKG  803

Query  514  DQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQ  553
                + AK++   + A       +  + N+ +    +  +
Sbjct  804  LADRFMAKVKQGTEQAHGTGYGGSGFKFNEEEDEARKSAK  843


 Score = 61.0 bits (146),  Expect = 3e-08, Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 51/136 (38%), Gaps = 8/136 (6%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVD-----GAKV-VVLVNRVHLV  60
            Q + +   + G++ I    TG+GKT A      RH++           + +++     LV
Sbjct  451  QAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHVKDQPAVVPGDGPIGLIMAPTRELV  510

Query  61   TQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
             Q   + ++           + G  G       L R  ++++CT   +   L +   +  
Sbjct  511  VQIHSDIKKFSKALGINCVAIYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSSGK-I  569

Query  120  VELTVFSLIVVDECHH  135
              L   + +V+DE   
Sbjct  570  TNLRRVTFLVMDEADR  585


>sp|Q6BZ77|DBP3_DEBHA ATP-dependent RNA helicase DBP3 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / 
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DBP3 PE=3 SV=1
Length=527

 Score = 123 bits (308),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 44/212 (21%), Positives = 79/212 (37%), Gaps = 23/212 (11%)

Query  333  DRKNELAHLATHGPENPKLEMLEKILQRQFSSSN-SPRGIIFTRTRQSAHSLLLWLQQQQ  391
                 +  +        K + L  +L++  S SN   + +IF   ++ A  +   L +  
Sbjct  328  SANKRITQIVEVIEPYDKEKKLLSLLRKYQSGSNKDDKVLIFALYKKEATRIENLLVRNS  387

Query  392  GLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN  451
                             S+    ++Q+ +   +  F+ G   LL+AT VA  GLDIP+  
Sbjct  388  --------------FKVSAVHGDLSQQQRTSALGAFKAGKTTLLLATDVAARGLDIPNVK  433

Query  452  VVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELI------NEALETLM  503
            VV+           V   GR  RA Q+  A  + TE  + L   L+      N+ +   +
Sbjct  434  VVINLTFPLTVEDYVHRIGRTGRAGQTGIAHTLFTEHEKHLSGALMNVLRGANQPVPDEL  493

Query  504  EQAVAAVQKMDQAEYQAKIRDLQQAALTKRAA  535
             +     +K   + Y A  +D+      K+  
Sbjct  494  LKFGGHTKKKAHSAYGAFFKDVDMTKTAKKIK  525


 Score = 54.4 bits (129),  Expect = 2e-06, Method: Composition-based stats.
 Identities = 51/312 (16%), Positives = 97/312 (31%), Gaps = 27/312 (9%)

Query  15   LEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGEEFRRML-  71
            L GK++I    TG+GKT A         L       KV+ +     L  Q  +    +  
Sbjct  152  LSGKDVIGVAETGSGKTFAFGVPAINNILTHDKKGLKVLCISPTRELALQIYDNLVDLTA  211

Query  72   DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVD  131
            +       + G +        L R   +++ T   L   L        + L     +V+D
Sbjct  212  NTPLKCVAVYGGVSKHEQVSSL-RNASVVVATPGRLIDLLND----GALSLDSIEYLVLD  266

Query  132  ECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS-PGTGG-------ASKLDGAIN  183
            E     +   +   +   ++      +   Q L  TA+ P            S +  +I 
Sbjct  267  EADRMLEKG-FEQDIKSVMQQTNHANR---QTLMFTATWPKEVRELASTFMNSPVKVSIG  322

Query  184  HVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDH  243
               +L AN     I+       + ++      K  +  ++        L+  L  +    
Sbjct  323  DRNELSANKRITQIVEVIEPYDKEKKLLSLLRKYQSGSNKDD----KVLIFALYKKEATR  378

Query  244  LEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDAL  303
            +E   +   F        + +    +AL   +  +   L         L    V+ V  L
Sbjct  379  IENLLVRNSFKVSAVHGDLSQQQRTSALGAFKAGKTTLLLATDVAARGLDIPNVKVVINL  438

Query  304  AA---LQDFYHR  312
                 ++D+ HR
Sbjct  439  TFPLTVEDYVHR  450


>sp|Q4P3U9|RRP3_USTMA ATP-dependent rRNA helicase RRP3 OS=Ustilago 
maydis (strain 521 / FGSC 9021) OX=237631 GN=RRP3 PE=3 
SV=2
Length=561

 Score = 123 bits (309),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 50/217 (23%), Positives = 88/217 (41%), Gaps = 27/217 (12%)

Query  335  KNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQ  394
             + L       P   K   L  +   Q   S     I+FTRT   +  L + L+      
Sbjct  325  VSTLKQHYMFMPFAHKDTYLVHLANEQAGHS----IIVFTRTVHDSQRLSILLR------  374

Query  395  TVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV  454
                    L+G         ++Q+ +   + KF+ G  ++LVAT VA  GLDIP  ++VV
Sbjct  375  --------LLGFPAIPLHGQLSQQARLGALNKFKTGGRSILVATDVASRGLDIPAVDLVV  426

Query  455  RYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKREL-------INEALETLMEQ  505
             Y + TN    +   GR ARA +S  +  + T+   EL + +       + E      ++
Sbjct  427  NYDIPTNSKDYIHRVGRTARAGRSGRSVTLVTQYDVELLQRIEAVIGLKMTEFPGGNDKE  486

Query  506  AVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQREN  542
            AV  + +     ++A +R+L+   +        ++  
Sbjct  487  AVMLLSERVAEAHRAAVRELKDKGVGSAGGSGKRKRK  523


 Score = 67.1 bits (162),  Expect = 3e-10, Method: Composition-based stats.
 Identities = 66/389 (17%), Positives = 133/389 (34%), Gaps = 42/389 (11%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVV---LVNRVHL---V  60
            Q + I  AL+ +++I    TG+GKT  AA+         D  K      L     L   +
Sbjct  141  QVKAIPEALQARDVIGLAQTGSGKT--AAFTIPILQALWDNPKPFFACVLAPTRELAYQI  198

Query  61   TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
            +Q  E     +  R        DM  ++    L++   +++ T   LQ  L + +     
Sbjct  199  SQQVEALGSTIGVRSATIVGGMDMMSQSI--ALSKRPHVIVATPGRLQDHLENTKG---F  253

Query  121  ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG  180
             L     +V+DE      D  +  I+ + L+   +      + +  +A+  T  A     
Sbjct  254  SLRGLQYLVMDEADRLL-DMDFGPIIDKLLQSIPRER----RTMLFSATMTTKVAKLQRA  308

Query  181  AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI  240
            ++ + +++  +     + + +         + +     +L +    +  G  +      +
Sbjct  309  SLKNPVRVEVDTKYTTVSTLKQHYM-FMPFAHKDTYLVHLAN----EQAGHSIIVFTRTV  363

Query  241  HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV  300
            HD   +  L R  G         +LS+ A L  L + +     +    D       + AV
Sbjct  364  HDSQRLSILLRLLGF-PAIPLHGQLSQQARLGALNKFKTGGRSILVATDVASRGLDIPAV  422

Query  301  DALAAL------QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEML  354
            D +         +D+ HR  V +T       R + L      EL           ++E +
Sbjct  423  DLVVNYDIPTNSKDYIHR--VGRTARAGRSGRSVTLVTQYDVELLQ---------RIEAV  471

Query  355  EKILQRQFSSSNSPR-GIIFTRTRQSAHS  382
              +   +F   N     ++ +     AH 
Sbjct  472  IGLKMTEFPGGNDKEAVMLLSERVAEAHR  500


>sp|Q75EW9|RRP3_EREGS ATP-dependent rRNA helicase RRP3 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=RRP3 PE=3 SV=2
Length=486

 Score = 122 bits (306),  Expect = 3e-28, Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 86/217 (40%), Gaps = 33/217 (15%)

Query  346  PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
            P   K   L  +L      +     I+FTRT+ +A  +            ++  A  L G
Sbjct  289  PGGLKNTFLIYLLNEFIGKT----TIVFTRTKANAERISGL------CNLLEFSATALHG  338

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM  465
                     + Q  +   +  F+ G  ++LVAT VA  GLDIP  ++V+ Y +  +  S 
Sbjct  339  --------DLNQNQRTGALDLFKAGKKSILVATDVAARGLDIPSVDLVINYDIPVDSKSY  390

Query  466  VQARGR-ARADQSVYAFVATEG-------------SRELKRELINEALETLMEQAVAAVQ  511
            +   GR ARA +S  +                    ++L +E +++++   +  +V    
Sbjct  391  IHRVGRTARAGRSGKSVSLVSQYDLELILRIEEVLGKKLPKENVDKSIVLSLRDSVDKAN  450

Query  512  KMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFP  548
                 E   + ++ +Q     R ++ A REN  ++  
Sbjct  451  GEVIMELNRRNKE-KQTRGKGRRSRTATRENMDKEEE  486


 Score = 58.3 bits (139),  Expect = 1e-07, Method: Composition-based stats.
 Identities = 35/131 (27%), Positives = 49/131 (37%), Gaps = 5/131 (4%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q + I PAL+GK+II    TG+GKT A A  +  R           +L     L  Q  E
Sbjct  93   QSKAIPPALQGKDIIGLAQTGSGKTAAFAIPILNRLWHDQQPYYACILAPTRELAQQIKE  152

Query  66   EFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
             F  +        T + G M        L R   ++I T   L   L + +      L  
Sbjct  153  TFDSLGSLMGVRTTCIVGGMNMMDQARDLMRKPHIIIATPGRLMDHLENTKG---FALRK  209

Query  125  FSLIVVDECHH  135
               +V+DE   
Sbjct  210  LQFLVMDEADR  220


>sp|Q6CT46|DBP3_KLULA ATP-dependent RNA helicase DBP3 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 
1267 / NRRL Y-1140 / WM37) OX=284590 GN=DBP3 PE=3 SV=1
Length=504

 Score = 122 bits (306),  Expect = 3e-28, Method: Composition-based stats.
 Identities = 38/182 (21%), Positives = 74/182 (41%), Gaps = 22/182 (12%)

Query  361  QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ  420
                + + + +IF   ++ A  +   L+                G   ++    ++Q+ +
Sbjct  334  HSGPTKNDKVLIFALYKKEASRVERNLK--------------YNGYDVAAIHGDLSQQQR  379

Query  421  QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVY  479
             + + +F+ G  NLL+AT VA  GLDIP+   V+           V   GR  RA Q   
Sbjct  380  TQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGT  439

Query  480  AF-VATEGSRELKRELIN------EALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTK  532
            A  + TE  + L   L+N      + +   +++     +K + + Y A  +D+  +   K
Sbjct  440  AHTLFTEQEKHLAGALVNVLNGAGQPVPEELKKFGTHTKKKEHSAYGAFFKDVDLSKKPK  499

Query  533  RA  534
            + 
Sbjct  500  KI  501


 Score = 57.1 bits (136),  Expect = 4e-07, Method: Composition-based stats.
 Identities = 60/337 (18%), Positives = 110/337 (33%), Gaps = 23/337 (7%)

Query  15   LEGKNIIIWLPTGAGKTRA----AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRM  70
            L GK++I    TG+GKT A    A        +     KV+V+     L +Q  +    +
Sbjct  127  LAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISPTRELASQIYDNLIVL  186

Query  71   LDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIV  129
             D        + G +        L R   +++ T   L   +    EE  V+L+  + +V
Sbjct  187  TDACGLRSCCVYGGVPKDQQREDLRRS-QVVVATPGRLLDLI----EEGSVDLSHVNYLV  241

Query  130  VDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS-PGTGGASKLDGAINHVLQL  188
            +DE     +   +   + + +      ++   Q L  TA+ P              V   
Sbjct  242  LDEADRMLEKG-FEEDIKKIIRQTRSTSR---QTLMFTATWPKEVRELASSFMSEPVKVS  297

Query  189  CANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPE  248
              N D            ++ +  ++  K   L  +    P  +    +           E
Sbjct  298  IGNRDELSANKRITQIVEVVDPFRKEKKLLELLKKYHSGPTKNDKVLIFALYKKEASRVE  357

Query  249  LSRKFGTQMYEQQVVKLSEAAALAGLQEQRV--YALHLRRYNDALLIH-DTVRAVDALAA  305
             + K+           LS+      L E +     L L     A  +    V+ V  L  
Sbjct  358  RNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTF  417

Query  306  ---LQDFYHREHVTKTQILCAERRLLALFDDRKNELA  339
               ++D+ HR  + +T           LF +++  LA
Sbjct  418  PLTVEDYVHR--IGRTGRAGQYGTAHTLFTEQEKHLA  452


>sp|Q5ACU6|RRP3_CANAL ATP-dependent rRNA helicase RRP3 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=RRP3 
PE=3 SV=3
Length=534

 Score = 122 bits (307),  Expect = 3e-28, Method: Composition-based stats.
 Identities = 62/329 (19%), Positives = 113/329 (34%), Gaps = 47/329 (14%)

Query  228  PFGDLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR  285
            P  +L  ++ D          L      G      Q   L     +      R+   HL 
Sbjct  194  PTRELAFQIKDTFDALGSSMGLRSSCIVGGMDMMDQARDLMRKPHVIVATPGRI-MDHLE  252

Query  286  RYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFD----DRKNELAHL  341
                  L +     +D    L D      + K   +   +R   LF     ++  +L   
Sbjct  253  HTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVIPIKRTTYLFSATMTNKIEKLQRA  312

Query  342  ATHGPE----NPKLEMLEKILQRQFSSSNSPR---------------GIIFTRTRQSAHS  382
            + H P     + K +  + ++Q     ++  +                I+FTRT   A  
Sbjct  313  SLHNPVRVAVSSKYQTADNLVQSMMLVNDGYKNTILIHLLNEFMGKSIIVFTRTVAHAQR  372

Query  383  LLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAE  442
              L                 ++G         ++Q  +   + KF+    N+LVAT VA 
Sbjct  373  TALL--------------ARILGFNAVPLHGQLSQSQRLGSLNKFKSNQANILVATDVAA  418

Query  443  EGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALE  500
             GLDIP  +VV+ Y + T+  + +   GR ARA +S  +  + T+   E     +   +E
Sbjct  419  RGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLE-----MYLRIE  473

Query  501  TLMEQAVAAVQKMDQAEYQAKIRDLQQAA  529
            +++ + +    K  +    A    + +A 
Sbjct  474  SVLGKKLPKEDKPPKEVLDALHVHVDKAT  502


 Score = 59.4 bits (142),  Expect = 7e-08, Method: Composition-based stats.
 Identities = 33/133 (25%), Positives = 49/133 (37%), Gaps = 9/133 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQ---  62
            Q E I  ALEGK+II    TG+GKT A A  + +           +VL     L  Q   
Sbjct  145  QSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWHAQQPYFALVLAPTRELAFQIKD  204

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
              +     +  R +      DM  +A    L R   +++ T   +   L   +      L
Sbjct  205  TFDALGSSMGLRSSCIVGGMDMMDQAR--DLMRKPHVIVATPGRIMDHLEHTKG---FSL  259

Query  123  TVFSLIVVDECHH  135
                 +V+DE   
Sbjct  260  KNLKYLVMDEADR  272


>sp|P0CQ76|DBP2_CRYNJ ATP-dependent RNA helicase DBP2-A OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=DBP2 PE=3 SV=1
Length=540

 Score = 122 bits (307),  Expect = 4e-28, Method: Composition-based stats.
 Identities = 62/373 (17%), Positives = 126/373 (34%), Gaps = 53/373 (14%)

Query  162  QVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQY-NL  220
            + +G TA P +        A++    L A  +T    +   C P +   + QP     + 
Sbjct  126  RRMGFTA-PSSIQCQAWPMALSG-RDLVAIAETGSGKTISFCLPAMVHINAQPLLAPGDG  183

Query  221  CHRRSQDPFGDLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEAAALAGLQEQR  278
                   P  +L  ++  +     +   +     +G      Q+  L     +      R
Sbjct  184  PIVLILAPTRELAVQIQTEATKFGQSSRIRNTAIYGGAPKGPQIRDLQRGVEICVATPGR  243

Query  279  VY------ALHLRRYNDALLIHDTVRAVD---------ALAALQDFYHREHVTKTQILCA  323
            +         +L+R    L++ +  R +D          ++ ++        + T     
Sbjct  244  LIDMLETGKTNLKR-VTYLVMDEADRMLDMGFEPQIRKIVSQIRPDRQTLLFSATW-PKE  301

Query  324  ERRLLALFDDR-------------KNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRG  370
             +RL   F                 + +A       +  K   L   L++   S  + + 
Sbjct  302  VQRLAMDFLHDFIQVNIGSLDLTANHNVAQHVEVCTDFDKRSKLLSHLEKI--SQENGKV  359

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            +IF  T++ A  L  +L+              + G    +      Q ++  V+ +F+ G
Sbjct  360  LIFVATKRVADDLTKFLR--------------MDGWPALAIHGDKQQAERDWVLAEFKSG  405

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFV-ATEGSR  488
               +++AT VA  GLD+     V+ Y    N    +   GR  RA +   ++   T  + 
Sbjct  406  RSPIMLATDVASRGLDVRDIGYVINYDFPNNCEDYIHRIGRTGRAGRKGTSYTYFTMDNS  465

Query  489  ELKRELINEALET  501
            +  REL+    E+
Sbjct  466  KAARELVQILRES  478


 Score = 53.6 bits (127),  Expect = 5e-06, Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 48/130 (37%), Gaps = 13/130 (10%)

Query  14   ALEGKNIIIWLPTGAGKTRAAAYV-------AKRHLETVDGAKVVVLVNRVHLVTQ-HGE  65
            AL G++++    TG+GKT  +  +       A+  L   DG  V++L     L  Q   E
Sbjct  144  ALSGRDLVAIAETGSGKT-ISFCLPAMVHINAQPLLAPGDGPIVLILAPTRELAVQIQTE  202

Query  66   EFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF  125
              +     R   T + G          L R  ++ + T   L   L    E     L   
Sbjct  203  ATKFGQSSRIRNTAIYGGAPKGPQIRDLQRGVEICVATPGRLIDML----ETGKTNLKRV  258

Query  126  SLIVVDECHH  135
            + +V+DE   
Sbjct  259  TYLVMDEADR  268


>sp|P0CQ77|DBP2_CRYNB ATP-dependent RNA helicase DBP2-A OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=DBP2 PE=3 SV=1
Length=540

 Score = 122 bits (307),  Expect = 4e-28, Method: Composition-based stats.
 Identities = 62/373 (17%), Positives = 126/373 (34%), Gaps = 53/373 (14%)

Query  162  QVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQY-NL  220
            + +G TA P +        A++    L A  +T    +   C P +   + QP     + 
Sbjct  126  RRMGFTA-PSSIQCQAWPMALSG-RDLVAIAETGSGKTISFCLPAMVHINAQPLLAPGDG  183

Query  221  CHRRSQDPFGDLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEAAALAGLQEQR  278
                   P  +L  ++  +     +   +     +G      Q+  L     +      R
Sbjct  184  PIVLILAPTRELAVQIQTEATKFGQSSRIRNTAIYGGAPKGPQIRDLQRGVEICVATPGR  243

Query  279  VY------ALHLRRYNDALLIHDTVRAVD---------ALAALQDFYHREHVTKTQILCA  323
            +         +L+R    L++ +  R +D          ++ ++        + T     
Sbjct  244  LIDMLETGKTNLKR-VTYLVMDEADRMLDMGFEPQIRKIVSQIRPDRQTLLFSATW-PKE  301

Query  324  ERRLLALFDDR-------------KNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRG  370
             +RL   F                 + +A       +  K   L   L++   S  + + 
Sbjct  302  VQRLAMDFLHDFIQVNIGSLDLTANHNVAQHVEVCTDFDKRSKLLSHLEKI--SQENGKV  359

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            +IF  T++ A  L  +L+              + G    +      Q ++  V+ +F+ G
Sbjct  360  LIFVATKRVADDLTKFLR--------------MDGWPALAIHGDKQQAERDWVLAEFKSG  405

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFV-ATEGSR  488
               +++AT VA  GLD+     V+ Y    N    +   GR  RA +   ++   T  + 
Sbjct  406  RSPIMLATDVASRGLDVRDIGYVINYDFPNNCEDYIHRIGRTGRAGRKGTSYTYFTMDNS  465

Query  489  ELKRELINEALET  501
            +  REL+    E+
Sbjct  466  KAARELVQILRES  478


 Score = 53.6 bits (127),  Expect = 5e-06, Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 48/130 (37%), Gaps = 13/130 (10%)

Query  14   ALEGKNIIIWLPTGAGKTRAAAYV-------AKRHLETVDGAKVVVLVNRVHLVTQ-HGE  65
            AL G++++    TG+GKT  +  +       A+  L   DG  V++L     L  Q   E
Sbjct  144  ALSGRDLVAIAETGSGKT-ISFCLPAMVHINAQPLLAPGDGPIVLILAPTRELAVQIQTE  202

Query  66   EFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF  125
              +     R   T + G          L R  ++ + T   L   L    E     L   
Sbjct  203  ATKFGQSSRIRNTAIYGGAPKGPQIRDLQRGVEICVATPGRLIDML----ETGKTNLKRV  258

Query  126  SLIVVDECHH  135
            + +V+DE   
Sbjct  259  TYLVMDEADR  268


>sp|Q4IF76|DBP2_GIBZE ATP-dependent RNA helicase DBP2 OS=Gibberella 
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / 
NRRL 31084 / PH-1) OX=229533 GN=DBP2 PE=3 SV=2
Length=554

 Score = 122 bits (307),  Expect = 4e-28, Method: Composition-based stats.
 Identities = 55/340 (16%), Positives = 111/340 (33%), Gaps = 48/340 (14%)

Query  193  DTWCIMSPQNCCPQLQEHSQQPCKQY-NLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSR  251
            +T    +   C P +   + QP     +        P  +L  ++ +++        +  
Sbjct  181  ETGSGKTLTYCLPSIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQEEMKKFGRSSRIRN  240

Query  252  K--FGTQMYEQQVVKLSEAAALAGLQEQRVY------ALHLRRYNDALLIHDTVRAVD--  301
               +G      Q+  LS    +      R+         +LRR    L++ +  R +D  
Sbjct  241  TCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGKTNLRR-VTYLVLDEADRMLDMG  299

Query  302  -------ALAALQDFYHREHVTKTQILCAERRLLALFDDRKN------------ELAHLA  342
                    +  ++        + T              D                +  + 
Sbjct  300  FEPQIRKIIGQIRPDRQTLMWSATWPKEVRALASDFLQDFIQVNIGSMELAANHRITQIV  359

Query  343  THGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL  402
                E  K + + K    +   +   + +IF  T++ A  +  +L+Q             
Sbjct  360  EVVTEMEKRDRMIK-HMEKVMENKENKILIFVGTKRVADEITRFLRQD------------  406

Query  403  LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE  462
              G    S      Q ++  V+ +F+ G   ++VAT VA  G+D+ +   V+ Y    N 
Sbjct  407  --GWPALSIHGDKQQNERDWVLDQFKTGKSPIMVATDVASRGIDVRNITHVLNYDYPNNS  464

Query  463  ISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALE  500
               +   GR  RA     A  + T  +++  R+L+N   E
Sbjct  465  EDYIHRIGRTGRAGAMGTAITLFTTDNQKQARDLVNVLQE  504


 Score = 51.3 bits (121),  Expect = 2e-05, Method: Composition-based stats.
 Identities = 32/129 (25%), Positives = 51/129 (40%), Gaps = 11/129 (9%)

Query  14   ALEGKNIIIWLPTGAGKTRAAAYVAKRH------LETVDGAKVVVLVNRVHLVTQHGEEF  67
            AL G++++    TG+GKT      +  H      L   DG  V+VL     L  Q  EE 
Sbjct  170  ALSGRDVVGIAETGSGKTLTYCLPSIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQEEM  229

Query  68   RRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS  126
            ++     R   T + G +        L+R  ++ I T   L   L + +      L   +
Sbjct  230  KKFGRSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGKTN----LRRVT  285

Query  127  LIVVDECHH  135
             +V+DE   
Sbjct  286  YLVLDEADR  294


>sp|Q9NXZ2|DDX43_HUMAN Probable ATP-dependent RNA helicase DDX43 
OS=Homo sapiens OX=9606 GN=DDX43 PE=1 SV=2
Length=648

 Score = 123 bits (309),  Expect = 4e-28, Method: Composition-based stats.
 Identities = 41/199 (21%), Positives = 79/199 (40%), Gaps = 24/199 (12%)

Query  347  ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA  406
            E  K   ++  LQ   S S++ + I+F   +  A  L   L              +L   
Sbjct  470  EEEKWSHMQTFLQ---SMSSTDKVIVFVSRKAVADHLSSDL--------------ILGNI  512

Query  407  GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV  466
               S      QRD+++ ++ F+ G + +L+AT +A  GLD+     V  +    N    V
Sbjct  513  SVESLHGDREQRDREKALENFKTGKVRILIATDLASRGLDVHDVTHVYNFDFPRNIEEYV  572

Query  467  QARGR-ARADQSVYAFVA-TEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD  524
               GR  RA ++  +    T     +  ELIN     ++E+A  ++ +   +  +     
Sbjct  573  HRIGRTGRAGRTGVSITTLTRNDWRVASELIN-----ILERANQSIPEELVSMAERFKAH  627

Query  525  LQQAALTKRAAQAAQRENQ  543
             Q+  + ++  +   R  +
Sbjct  628  QQKREMERKMERPQGRPKK  646


 Score = 52.9 bits (125),  Expect = 8e-06, Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 41/126 (33%), Gaps = 11/126 (9%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK-------VVVLVNRVHLVTQHGEEF  67
            L+G ++I    TG GKT         HL      K       ++VL     L  Q   E 
Sbjct  277  LQGIDLIGVAQTGTGKTLCYLMPGFIHLVLQPSLKGQRNRPGMLVLTPTRELALQVEGEC  336

Query  68   RRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSL  127
             +          + G          L +  D++I T   L       +    V L   + 
Sbjct  337  CKYSYKGLRSVCVYGGGNRDEQIEELKKGVDIIIATPGRLND----LQMSNFVNLKNITY  392

Query  128  IVVDEC  133
            +V+DE 
Sbjct  393  LVLDEA  398


>sp|P46942|DB10_NICSY ATP-dependent RNA helicase-like protein 
DB10 OS=Nicotiana sylvestris OX=4096 PE=2 SV=1
Length=607

 Score = 123 bits (308),  Expect = 4e-28, Method: Composition-based stats.
 Identities = 41/166 (25%), Positives = 68/166 (41%), Gaps = 21/166 (13%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K   +E+IL+   S     + IIF  T++    L   L +                 G +
Sbjct  376  KQRRVEQILR---SKEPGSKIIIFCSTKKMCDQLSRNLTRN---------------FGAA  417

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
            +     +Q ++  V+ +F+ G   +LVAT VA  GLDI    VV+ Y   T     V   
Sbjct  418  AIHGDKSQGERDYVLSQFRAGRSPVLVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRI  477

Query  470  GR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKM  513
            GR  RA  S  A+   ++   +   +L+ + LE   +     ++ M
Sbjct  478  GRTGRAGASGLAYTFFSDQDSKHALDLV-KVLEGANQCVPTELRDM  522


 Score = 67.5 bits (163),  Expect = 2e-10, Method: Composition-based stats.
 Identities = 71/341 (21%), Positives = 107/341 (31%), Gaps = 27/341 (8%)

Query  14   ALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK-------VVVLVNRVHLVTQ-HGE  65
            AL+G++I+    TG+GKT    Y+    +      K       ++VL     L TQ   E
Sbjct  179  ALQGRDIVAIAKTGSGKTL--GYLMPAFIHLQQRRKNPQLGPTILVLSPTRELATQIQAE  236

Query  66   EFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF  125
              +     R + T L G          L+R  D+++ T   L   L    E   V L   
Sbjct  237  AVKFGKSSRISCTCLYGGAPKGPQLRELSRGVDIVVATPGRLNDIL----EMRRVSLGQV  292

Query  126  SLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS-PGTGGASKLDGAINH  184
            S +V+DE            I     E+ +QR     Q L  TA+ P        D  +N 
Sbjct  293  SYLVLDEADRMLDMGFEPQIRKIVKEVPVQR-----QTLMYTATWPKGVRKIAADLLVNS  347

Query  185  VLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHL  244
            V     N+D            Q  E      KQ  +         G  +           
Sbjct  348  VQVNIGNVDELV---ANKSITQHIEVVLPMEKQRRVEQILRSKEPGSKIIIFCSTKKMCD  404

Query  245  EMP-ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV---  300
            ++   L+R FG         +      L+  +  R   L         L    +R V   
Sbjct  405  QLSRNLTRNFGAAAIHGDKSQGERDYVLSQFRAGRSPVLVATDVAARGLDIKDIRVVINY  464

Query  301  DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHL  341
            D    ++D+ HR   T                D K+ L  +
Sbjct  465  DFPTGIEDYVHRIGRTGRAGASGLAYTFFSDQDSKHALDLV  505


>sp|A6SCT6|DBP3_BOTFB ATP-dependent RNA helicase dbp3 OS=Botryotinia 
fuckeliana (strain B05.10) OX=332648 GN=dbp3 PE=3 SV=2
Length=603

 Score = 123 bits (308),  Expect = 4e-28, Method: Composition-based stats.
 Identities = 40/194 (21%), Positives = 75/194 (39%), Gaps = 23/194 (12%)

Query  350  KLEMLEKILQRQFSSS-NSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN  408
            K   L ++L++  S S    R ++F   ++ A  +  +++Q+              G   
Sbjct  421  KEYRLMQLLKQYQSGSQKDDRILVFCLYKKEATRVESFIRQK--------------GFRV  466

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
            +     ++Q  +   ++ F+ G   +LVAT VA  GLDIP   +V+           V  
Sbjct  467  AGIHGDLSQEQRTRSLEAFKSGNTPVLVATDVAARGLDIPAVKLVINCTFPLTVEDYVHR  526

Query  469  RGR-ARADQSVYAF-VATEGSRELKRELI------NEALETLMEQAVAAVQKMDQAEYQA  520
             GR  RA +   A  + TE  +     LI      N+ +   + +    V+K     Y A
Sbjct  527  IGRTGRAGKDGLAITLFTEHDKAQSGALINVLKAANQPVPDELLKFGTTVKKKAHDAYGA  586

Query  521  KIRDLQQAALTKRA  534
              +++       + 
Sbjct  587  FFKNVDTTKKATKI  600


 Score = 49.0 bits (115),  Expect = 1e-04, Method: Composition-based stats.
 Identities = 24/127 (19%), Positives = 49/127 (39%), Gaps = 10/127 (8%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKV------VVLVNRVHLVTQHGEEFR  68
            L G+++I    TG+GKT A A    R++ ++   ++      VV+     L  Q  E+  
Sbjct  221  LAGRDVIGVAETGSGKTMAFAVPCVRYMSSLPKNQINKGPRAVVVSPTRELAMQSYEQIV  280

Query  69   RMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLI  128
            ++               P+       +  D+++ T   L   +     +   +L+    +
Sbjct  281  KLAKASGLECVCVYGGVPKDEQIRALKTADIVVATPGRLNDLIN----QGCADLSKARYV  336

Query  129  VVDECHH  135
            V+DE   
Sbjct  337  VLDEADR  343


>sp|A2QFL3|DBP3_ASPNC ATP-dependent RNA helicase dbp3 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=dbp3 PE=3 SV=1
Length=495

 Score = 122 bits (305),  Expect = 4e-28, Method: Composition-based stats.
 Identities = 70/350 (20%), Positives = 125/350 (36%), Gaps = 58/350 (17%)

Query  227  DPFGDLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEAAALAGLQEQRVYALHL  284
             P  +L  ++ DQI    E+ ++     FG    E+Q   L + AA+      R+  L  
Sbjct  158  SPTRELAMQIHDQISKFAELVDIKVACIFGGVKKEEQREAL-KTAAIVVATPGRLKDLQN  216

Query  285  RRYND-----ALLIHDTVRAVDALAA--LQDFYHREHVTKTQI-------LCAERRLLAL  330
                D      L++ +  R +D      ++D      V+K Q            R L A 
Sbjct  217  DGSVDLGKVKYLVLDEADRMLDKGFEQDIKDIIRPMPVSKRQTVMFTATWPPVVRDLAAT  276

Query  331  F----------------DDRKNELAHLATHGPENPKLEMLEKILQRQ-FSSSNSPRGIIF  373
            F                      +  +      + K + L ++L +     S+S + ++F
Sbjct  277  FMTSPVTVTIGGEPSADPRANTRIKQVVEVVKPHEKEQRLVQLLNKYQKGPSSSDKILVF  336

Query  374  TRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN  433
               ++ A  +   L  +              G   +     + Q+++ + ++ F+ G   
Sbjct  337  CLYKKEAVRVERLLWNK--------------GFKVAGIHGDLGQQERFKSLESFKKGVST  382

Query  434  LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELK  491
            +LVAT VA  GLDIP   +V+           V   GR  RA    +A  + TE  +   
Sbjct  383  VLVATDVAARGLDIPSVKLVINVTFPLTVEDYVHRIGRTGRAGAEGHAITLFTEVDKAQS  442

Query  492  RELIN-------EALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRA  534
              LIN       +  E L++   A V+K     Y A  +D+     + + 
Sbjct  443  GALINVLKAANQDVPEDLLKFG-ATVKKKQHDAYGAFYKDVDTNKTSTKI  491


 Score = 45.2 bits (105),  Expect = 0.002, Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 46/128 (36%), Gaps = 12/128 (9%)

Query  15   LEGKNIIIWLPTGAGKTR-AAAYVAKRHLETVDGAK-----VVVLVNRVHLVTQHGEEFR  68
              G+++I    TG+GKT        K   ++    K      V++     L  Q  ++  
Sbjct  113  FSGRDVIGIAETGSGKTLGFGLPCLKNLQDSAKKGKPYKPTAVMISPTRELAMQIHDQIS  172

Query  69   RMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSL  127
            +  +     V  + G +        L +   +++ T   L+      + +  V+L     
Sbjct  173  KFAELVDIKVACIFGGVKKEEQREAL-KTAAIVVATPGRLKD----LQNDGSVDLGKVKY  227

Query  128  IVVDECHH  135
            +V+DE   
Sbjct  228  LVLDEADR  235


>sp|Q6BQ61|RRP3_DEBHA ATP-dependent rRNA helicase RRP3 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 
/ JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=RRP3 PE=3 SV=2
Length=477

 Score = 121 bits (304),  Expect = 5e-28, Method: Composition-based stats.
 Identities = 66/357 (18%), Positives = 118/357 (33%), Gaps = 60/357 (17%)

Query  228  PFGDLLKKLMDQIHDHLEMPELSRKF---GTQMYEQQVVKLSEAAALAGLQEQRVYALHL  284
            P  +L  ++  +  D L      R     G      Q   L     +      R+   HL
Sbjct  141  PTRELAYQI-KETFDALGSSMGLRSVCIVGGMDMMDQARDLMRKPHILVATPGRI-MDHL  198

Query  285  RRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFD----DRKNELAH  340
                   L +     +D    L D      + K   +   +R   LF     ++  +L  
Sbjct  199  EHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKIIPTQRTTYLFSATMTNKIAKLQR  258

Query  341  LATHGPENP-----------------------KLEMLEKILQRQFSSSNSPRGIIFTRTR  377
             + H P                          K   L  +L      S     IIFTRT 
Sbjct  259  ASLHNPVRVAVSNKYQTADNLVQSMMLVSDGYKNTYLIHLLNEFLGKS----IIIFTRTC  314

Query  378  QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA  437
              +    L                 ++G         +TQ  +   + KF+ G  N+L+A
Sbjct  315  AHSQRTALL--------------ARILGFSAVPLHGQLTQAQRLGSLNKFKAGKANILIA  360

Query  438  TSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELI  495
            T VA  GLDIP  ++V+ Y + T+  + +   GR ARA +S  +  + T+   E     +
Sbjct  361  TDVAARGLDIPSVDIVINYDIPTDSKAYIHRVGRTARAGKSGKSISLITQYDLE-----M  415

Query  496  NEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHV  552
               +E+++ + +       +A        + +A      A    ++   ++ P ++ 
Sbjct  416  YLRIESVLGKKLPKDPSPSKAVLDTLHVHVDRA---SAEAIRQTKDFHEKRNPKKNR  469


 Score = 56.0 bits (133),  Expect = 7e-07, Method: Composition-based stats.
 Identities = 39/133 (29%), Positives = 54/133 (41%), Gaps = 9/133 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q E I  ALEGK+II    TG+GKT A A  + +   E       +VL     L  Q  E
Sbjct  92   QSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQALWEAQAAYYGLVLAPTRELAYQIKE  151

Query  66   EFRRMLD--GRWTVTTLSG-DMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
             F  +    G  +V  + G DM  +A    L R   +L+ T   +   L   +      L
Sbjct  152  TFDALGSSMGLRSVCIVGGMDMMDQAR--DLMRKPHILVATPGRIMDHLEHTKG---FSL  206

Query  123  TVFSLIVVDECHH  135
                 +V+DE   
Sbjct  207  KNLKYLVMDEADR  219


>sp|P44701|SRMB_HAEIN ATP-dependent RNA helicase SrmB OS=Haemophilus 
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) 
OX=71421 GN=srmB PE=3 SV=1
Length=439

 Score = 121 bits (302),  Expect = 5e-28, Method: Composition-based stats.
 Identities = 43/159 (27%), Positives = 67/159 (42%), Gaps = 15/159 (9%)

Query  352  EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ  411
            E   K+L R   +    RGI+F R R+ A  L   L+++       IR+  L G      
Sbjct  233  EHKIKLLARFIETEEVTRGIVFIRRREDARELSETLRKR------GIRSAYLEG------  280

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
               M Q  +   I K + G + +LVAT VA  G+DI   + V+ + L  +  + +   GR
Sbjct  281  --EMAQTQRNNAIDKLKSGIVTVLVATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGR  338

Query  472  -ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAA  509
             ARA +   A    E         I    E +++  + A
Sbjct  339  TARAGKKGTAVSFVEAHDYKLLGKIKRYTEEILKARILA  377


 Score = 66.7 bits (161),  Expect = 2e-10, Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 54/137 (39%), Gaps = 14/137 (10%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK-----VVVLVNRVHLVT  61
            Q E I  A+E  +++   PTG GKT A    A +HL      K     ++VL     L  
Sbjct  31   QMEAIPAAMEESDVLGSAPTGTGKTAAFLLPALQHLLDYPRRKPGPPRILVLTPTRELAM  90

Query  62   Q---HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEE  118
            Q     EE  +       + T++G +  +          DL++ T   L   +    +EE
Sbjct  91   QVAEQAEELAQFT--HLNIATITGGVAYQNHGDVFNTNQDLVVATPGRLLQYI----KEE  144

Query  119  HVELTVFSLIVVDECHH  135
            + +     +++ DE   
Sbjct  145  NFDCRSVEMLIFDEADR  161


>sp|Q8Y7M8|DBPA_LISMO ATP-dependent RNA helicase DbpA OS=Listeria 
monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) 
OX=169963 GN=dbpA PE=2 SV=1
Length=470

 Score = 121 bits (303),  Expect = 6e-28, Method: Composition-based stats.
 Identities = 58/327 (18%), Positives = 117/327 (36%), Gaps = 30/327 (9%)

Query  264  KLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCA  323
            +L +      L   +V  L L   ++ L +    +  D L+ L         + T +   
Sbjct  127  RLLDHIEKGSLNVDKVAHLVLDEVDEMLSMGFIDQVEDILSRLPKQRQNLFFSAT-MPEE  185

Query  324  ERRLLALFDDR--KNELAHLATHGPENPKLEM--LEKILQRQFSSSNSPRGIIFTRTRQS  379
             + L+  + D     E+A   T+   + +++    EK L+    + N    IIF  T+  
Sbjct  186  MQDLIKRYQDNPMVIEMASEKTNPIFHVEMQTDNKEKTLKDVLITENPDSAIIFCNTKNQ  245

Query  380  AHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATS  439
               L   L                     S     + Q D+   +  F+ G    L+AT 
Sbjct  246  VDELTDLLD-----------------VKASKIHGGLRQEDRFRAMDDFKSGKSRFLIATD  288

Query  440  VAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRE-LKRELINE  497
            VA  G+D+ + ++V+ Y L   + + V   GR  RA +S  A    + +   L R++   
Sbjct  289  VAGRGIDVDNVSLVINYDLPIEKENYVHRIGRTGRAGKSGKAISFVKTNENPLLRDIEEM  348

Query  498  ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRE------NQRQQFPVEH  551
               T+ ++    V ++   E   + +  ++  + K   +   +       N  ++  +  
Sbjct  349  LDVTIEKKRKPTVIEVKVNEDAFRKKQQKRPTIKKARGEKLNKNIMKLYFNGGKKKKIRA  408

Query  552  VQLLCINCMVAVGHGSDLRKVEGTHHV  578
            V  +     +      D+  +    HV
Sbjct  409  VDFVGTISKLEGITAEDIGIITIEDHV  435


 Score = 56.3 bits (134),  Expect = 6e-07, Method: Composition-based stats.
 Identities = 28/128 (22%), Positives = 53/128 (41%), Gaps = 6/128 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE  65
            Q  VI  AL G++I+    TG+GKT A A      +E  +   + +++V    L  Q   
Sbjct  26   QKAVIPVALTGEDIVAKSQTGSGKTAAFAIPIAEQVEWEENKPQALIIVPTRELAMQVKT  85

Query  66   EFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
            E   +    R     + G          L++ + +++ T   L   +    E+  + +  
Sbjct  86   ECTNIGRFKRVKAAAIYGQSPFAKQKLELSQKNHIVVGTPGRLLDHI----EKGSLNVDK  141

Query  125  FSLIVVDE  132
             + +V+DE
Sbjct  142  VAHLVLDE  149


>sp|Q9HGM5|DBP8_SCHPO ATP-dependent RNA helicase dbp8 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=dbp8 
PE=3 SV=1
Length=453

 Score = 121 bits (302),  Expect = 6e-28, Method: Composition-based stats.
 Identities = 67/402 (17%), Positives = 137/402 (34%), Gaps = 44/402 (11%)

Query  149  YLELKLQRAQPLPQ-VLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQL  207
            +    +++    P  +  L  +P    A ++D     +     NL    I+   +   Q 
Sbjct  61   FALPIIEKWSKDPSGIFALILTPTRELAIQIDEQFAALGA-NLNLKHALIVGGMDMIRQS  119

Query  208  QEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSE  267
             + S++P        R +     +  + +         + + + +  +  +      L +
Sbjct  120  IDLSKRPHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFAD---DLDD  176

Query  268  AAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRL  327
              ++    E R   L      DA+         +    L  +              +  +
Sbjct  177  CFSVLPASEDRQTLLFTATVTDAIRQLKYQPQKNNKPPLWLYEVETDNISVPSTLQQSYI  236

Query  328  LALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWL  387
                  R+  L HL T  PEN K                    IIF    ++A  +   L
Sbjct  237  FVSSQVREAYLVHLLTI-PENAK-----------------KSAIIFVNRTRTAELIYSIL  278

Query  388  QQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDI  447
            +       +++R   L         + M QR++   + +F+     +LVAT VA  GLDI
Sbjct  279  R------LLELRVTEL--------HSEMVQRERINSLGRFRAEAAKILVATDVASRGLDI  324

Query  448  PHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQ  505
            P   +V+ + L  +    +   GR ARA +S  +  + TE   +L       A+E  +  
Sbjct  325  PSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESISIVTERDVDLV-----HAIEDRVGT  379

Query  506  AVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQF  547
             ++  + + + +    I+++  A          +   +R+Q 
Sbjct  380  KLSEYEHVSENKMLEYIKEVTDAKRQASLEMIDRGFGERRQK  421


 Score = 64.0 bits (154),  Expect = 2e-09, Method: Composition-based stats.
 Identities = 33/138 (24%), Positives = 54/138 (39%), Gaps = 6/138 (4%)

Query  2    ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLV  60
            E    Q  VI   LEG+N I    TG+GKT A A  + ++  +   G   ++L     L 
Sbjct  29   EPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEKWSKDPSGIFALILTPTRELA  88

Query  61   TQ---HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE  117
             Q           L+ +  +     DM  ++    L++   +++ T   L   + S  EE
Sbjct  89   IQIDEQFAALGANLNLKHALIVGGMDMIRQSI--DLSKRPHVVVATPGRLADLIRSNGEE  146

Query  118  EHVELTVFSLIVVDECHH  135
                L     +V+DE   
Sbjct  147  TIAGLRRIKFLVMDEADR  164


>sp|A7TS37|RRP3_VANPO ATP-dependent rRNA helicase RRP3 OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 
21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=RRP3 PE=3 SV=1
Length=506

 Score = 121 bits (304),  Expect = 6e-28, Method: Composition-based stats.
 Identities = 42/202 (21%), Positives = 79/202 (39%), Gaps = 20/202 (10%)

Query  346  PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
            P   K   L  ++      +     I+FTRT+ +A  +                   L+ 
Sbjct  309  PGGLKNTYLIYLMNEFIGKT----IIVFTRTKANAERITTL--------------ANLLE  350

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM  465
               ++    + Q  +   +  F+ G  ++LVAT VA  GLDIP  ++V+ Y +  +  S 
Sbjct  351  FSATALHGDLNQNQRTGSLDLFKAGRRSILVATDVAARGLDIPSVDIVINYDIPVDSKSY  410

Query  466  VQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIR  523
            +   GR ARA +S  +  + ++   EL   + +   + L ++ V     +   +   K  
Sbjct  411  IHRVGRTARAGRSGKSISLVSQYDLELILRIEDVLGKKLPKENVNKDAILTLRDSVDKAN  470

Query  524  DLQQAALTKRAAQAAQRENQRQ  545
                  L +R  +   R   R+
Sbjct  471  GEVVMELNRRNKEKIARGKGRR  492


 Score = 57.9 bits (138),  Expect = 2e-07, Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 45/131 (34%), Gaps = 5/131 (4%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q   I PAL+G +II    TG+GKT A A  +  R           +L     L  Q  E
Sbjct  113  QARSIPPALQGHDIIGLAQTGSGKTAAFAIPILNRLWHDQQPYYACILAPTRELAQQIKE  172

Query  66   EFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
             F  +          + G M        L R   ++I T   L   L +        L  
Sbjct  173  TFDSLGSLMGVRSACIVGGMNMMDQARDLMRKPHIIIATPGRLMDHLENTRG---FSLRK  229

Query  125  FSLIVVDECHH  135
               +V+DE   
Sbjct  230  LKFLVMDEADR  240


>sp|Q4WH83|DBP3_ASPFU ATP-dependent RNA helicase dbp3 OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 
/ Af293) OX=330879 GN=dbp3 PE=3 SV=1
Length=503

 Score = 121 bits (304),  Expect = 6e-28, Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 76/194 (39%), Gaps = 23/194 (12%)

Query  350  KLEMLEKILQRQFSSSN-SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN  408
            K   L ++L R    +    + ++F   ++ A  +   L+ +      + +   + G   
Sbjct  320  KEARLVQLLSRSQRGAAVGDKVLVFCLYKKEAVRVERLLRSK------NFKVAGIHG---  370

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
                  + Q ++ + ++ F+ G+  +LVAT VA  GLDIP   +V+           V  
Sbjct  371  -----DLNQHERFKSLEAFKTGSATVLVATDVAARGLDIPSVKLVINVTFPLTVEDYVHR  425

Query  469  RGR-ARADQSVYAF-VATEGSRELKRELIN------EALETLMEQAVAAVQKMDQAEYQA  520
             GR  RA    +A  + TE  +     LIN      + +   + +    V+K     Y A
Sbjct  426  IGRTGRAGADGHAITLFTEADKAQSGALINVLRAAKQDVPDALLKFGTTVKKKQHGAYGA  485

Query  521  KIRDLQQAALTKRA  534
              +D+  +    + 
Sbjct  486  FFKDVDTSKSATKI  499


 Score = 48.3 bits (113),  Expect = 2e-04, Method: Composition-based stats.
 Identities = 24/128 (19%), Positives = 51/128 (40%), Gaps = 15/128 (12%)

Query  17   GKNIIIWLPTGAGKTRAAAYV--AKRHLETVDGAK------VVVLVNRVHLVTQHGEEFR  68
            G+++I    TG+GKT  A  +   K+ L++    +       V++     L  Q  ++  
Sbjct  122  GRDVIGIAETGSGKTL-AFGLPCIKKILDSGKVKRKHARPAAVIISPTRELAMQIYDQLS  180

Query  69   RMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSL  127
            +        VT + G +        L +   +++ T   L+      +++  V+L     
Sbjct  181  KFGASVDIRVTCIYGGVKKDEQREAL-KTAAIVVATPGRLKD----LKDDGSVDLGKVKY  235

Query  128  IVVDECHH  135
            +V+DE   
Sbjct  236  LVLDEADR  243


>sp|Q10202|DBP3_SCHPO ATP-dependent RNA helicase dbp3 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=dbp3 
PE=3 SV=1
Length=578

 Score = 121 bits (304),  Expect = 9e-28, Method: Composition-based stats.
 Identities = 36/159 (23%), Positives = 60/159 (38%), Gaps = 18/159 (11%)

Query  349  PKLEMLEKILQRQFSSS-NSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG  407
             K  ML+ +L++  SS     + +IF   ++ A  +   L ++                 
Sbjct  398  SKERMLDNLLRKHLSSGGKDDKILIFVLYKKEAARVEGTLARK---------------YN  442

Query  408  NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
                   M+Q  + + +  F+ G   +LVAT VA  GLDIP   +V+           V 
Sbjct  443  VVGIHGDMSQGARLQALNDFKSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYVH  502

Query  468  ARGR-ARADQSVYAF-VATEGSRELKRELINEALETLME  504
              GR  RA+    A    T   +    EL+N   +   +
Sbjct  503  RIGRTGRANTKGTAITFFTPQDKSHAGELVNVLRQAKQD  541


 Score = 53.6 bits (127),  Expect = 4e-06, Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 46/125 (37%), Gaps = 8/125 (6%)

Query  15   LEGKNIIIWLPTGAGKTRA----AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRM  70
            L G++++    TG+GKT A    A        +     +V+V+     L  Q  E    +
Sbjct  200  LAGRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSPTRELAIQTYENLNSL  259

Query  71   LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV  130
            + G      +     P++     A+   ++I T   L   +        ++ +    +V+
Sbjct  260  IQGTNLKAVVVYGGAPKSEQARAAKNASVIIGTPGRLLDLIND----GSIDCSQVGYLVL  315

Query  131  DECHH  135
            DE   
Sbjct  316  DEADR  320


>sp|P0CQ98|PRP5_CRYNJ Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Cryptococcus neoformans var. neoformans serotype 
D (strain JEC21 / ATCC MYA-565) OX=214684 GN=PRP5 PE=3 SV=1
Length=1072

 Score = 123 bits (308),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 45/208 (22%), Positives = 75/208 (36%), Gaps = 18/208 (9%)

Query  313  EHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQR---QFSSSNSPR  369
            E + +  ++      +        E+         + K   L +IL     +    +  R
Sbjct  599  ESLARRILVKPLEITVGGRSVVAPEIDQRVEVRDGDTKFTRLLEILGEMGEEHKDEDDFR  658

Query  370  GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD  429
             +IF   ++SA  L   L Q+              G   +S      Q D+ E I+ F++
Sbjct  659  TLIFVDRQESADDLFRELLQR--------------GYVCASLHGGKEQVDRDEAIKNFKN  704

Query  430  GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSR  488
            G + ++VATSVA  GLD+    +V+ Y    +    V   GR  RA             +
Sbjct  705  GDVPIIVATSVAARGLDVKELKLVINYDAPNHMEDYVHRAGRTGRAGNKGTCITFITPEQ  764

Query  489  ELKRELINEALETLMEQAVAAVQKMDQA  516
            E     I  ALE         ++KM  +
Sbjct  765  ERFSVDIVRALEASKAFIPDDLKKMSDS  792


 Score = 57.1 bits (136),  Expect = 5e-07, Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 55/138 (40%), Gaps = 12/138 (9%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYV-AKRHLET------VDGAKVVVLVNRVHL  59
            Q + I   + G+++I    TG+GKT  A  +   RH+         +G   VV+     L
Sbjct  430  QAQAIPAIMSGRDVIGIAKTGSGKT-VAFLLPMLRHVRDQRPVSGSEGPIAVVMSPTREL  488

Query  60   VTQHGEEFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALT-SPEEE  117
             +Q  +E +  L       +   G          + +  +++ICT   +   LT +    
Sbjct  489  ASQIYKECQPFLKVLNIRASCCVGGSSISEDIAAMKKGAEVVICTPGRMIDLLTANNGRV  548

Query  118  EHVELTVFSLIVVDECHH  135
             +V  T +  IV+DE   
Sbjct  549  TNVRRTTY--IVMDEADR  564


>sp|P0CQ99|PRP5_CRYNB Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Cryptococcus neoformans var. neoformans serotype 
D (strain B-3501A) OX=283643 GN=PRP5 PE=3 SV=1
Length=1072

 Score = 123 bits (308),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 45/208 (22%), Positives = 75/208 (36%), Gaps = 18/208 (9%)

Query  313  EHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQR---QFSSSNSPR  369
            E + +  ++      +        E+         + K   L +IL     +    +  R
Sbjct  599  ESLARRILVKPLEITVGGRSVVAPEIDQRVEVRDGDTKFTRLLEILGEMGEEHKDEDDFR  658

Query  370  GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD  429
             +IF   ++SA  L   L Q+              G   +S      Q D+ E I+ F++
Sbjct  659  TLIFVDRQESADDLFRELLQR--------------GYVCASLHGGKEQVDRDEAIKNFKN  704

Query  430  GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSR  488
            G + ++VATSVA  GLD+    +V+ Y    +    V   GR  RA             +
Sbjct  705  GDVPIIVATSVAARGLDVKELKLVINYDAPNHMEDYVHRAGRTGRAGNKGTCITFITPEQ  764

Query  489  ELKRELINEALETLMEQAVAAVQKMDQA  516
            E     I  ALE         ++KM  +
Sbjct  765  ERFSVDIVRALEASKAFIPDDLKKMSDS  792


 Score = 57.1 bits (136),  Expect = 5e-07, Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 55/138 (40%), Gaps = 12/138 (9%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYV-AKRHLET------VDGAKVVVLVNRVHL  59
            Q + I   + G+++I    TG+GKT  A  +   RH+         +G   VV+     L
Sbjct  430  QAQAIPAIMSGRDVIGIAKTGSGKT-VAFLLPMLRHVRDQRPVSGSEGPIAVVMSPTREL  488

Query  60   VTQHGEEFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALT-SPEEE  117
             +Q  +E +  L       +   G          + +  +++ICT   +   LT +    
Sbjct  489  ASQIYKECQPFLKVLNIRASCCVGGSSISEDIAAMKKGAEVVICTPGRMIDLLTANNGRV  548

Query  118  EHVELTVFSLIVVDECHH  135
             +V  T +  IV+DE   
Sbjct  549  TNVRRTTY--IVMDEADR  564


>sp|A6ZSX1|RRP3_YEAS7 ATP-dependent rRNA helicase RRP3 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=RRP3 PE=3 
SV=1
Length=501

 Score = 121 bits (302),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 47/202 (23%), Positives = 83/202 (41%), Gaps = 25/202 (12%)

Query  346  PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
            P   K   L  +L      +     IIFTRT+ +A  L            ++  A  L G
Sbjct  304  PGGLKNTYLIYLLNEFIGKT----MIIFTRTKANAERLSGL------CNLLEFSATALHG  353

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM  465
                     + Q  +   +  F+ G  ++LVAT VA  GLDIP  ++VV Y +  +  S 
Sbjct  354  --------DLNQNQRMGALDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSY  405

Query  466  VQARGR-ARADQSVYAF-VATEGSREL---KRELINEAL--ETLMEQAVAAVQKMDQAEY  518
            +   GR ARA +S  +  + ++   EL     E++ + L  E++ +  +  ++       
Sbjct  406  IHRVGRTARAGRSGKSISLVSQYDLELILRIEEVLGKKLPKESVDKNIILTLRDSVDKAN  465

Query  519  QAKIRDLQQAALTKRAAQAAQR  540
               + ++ +    K A    +R
Sbjct  466  GEVVMEMNRRNKEKIARGKGRR  487


 Score = 59.8 bits (143),  Expect = 5e-08, Method: Composition-based stats.
 Identities = 35/131 (27%), Positives = 49/131 (37%), Gaps = 5/131 (4%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q + I PALEG +II    TG+GKT A A  +  R     +     +L     L  Q  E
Sbjct  108  QSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLWHDQEPYYACILAPTRELAQQIKE  167

Query  66   EFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
             F  +        T + G M        L R   ++I T   L   L + +      L  
Sbjct  168  TFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHIIIATPGRLMDHLENTKG---FSLRK  224

Query  125  FSLIVVDECHH  135
               +V+DE   
Sbjct  225  LKFLVMDEADR  235


>sp|Q5N7W4|RH30_ORYSJ DEAD-box ATP-dependent RNA helicase 30 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os01g0911100 PE=2 
SV=2
Length=666

 Score = 122 bits (305),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 37/170 (22%), Positives = 63/170 (37%), Gaps = 19/170 (11%)

Query  333  DRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQG  392
               + +  +     E+ K   L K+L      S   R +IF +T++    +   L+    
Sbjct  465  KANHSIQQIIEVISEHEKYPRLSKLLSDLMDGS---RILIFFQTKKDCDKVTRQLR----  517

Query  393  LQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNV  452
                      + G    S      Q ++  V+ +F+ G   ++ AT VA  GLD+     
Sbjct  518  ----------MDGWPALSIHGDKAQAERDYVLAEFKSGKSPIMAATDVAARGLDVKDIKC  567

Query  453  VVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALE  500
            V+ +   T     +   GR  RA  S  AF   T  + +  R L+    E
Sbjct  568  VINFDFPTTLEDYIHRIGRTGRAGASGTAFTFFTLSNAKFSRNLVKILRE  617


 Score = 57.5 bits (137),  Expect = 3e-07, Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 50/129 (39%), Gaps = 11/129 (9%)

Query  14   ALEGKNIIIWLPTGAGKTRAAAYVAKRH------LETVDGAKVVVLVNRVHLVTQ-HGEE  66
            AL+G+++I    TG+GKT +       H      LE  DG  V++L     L  Q   E 
Sbjct  285  ALKGRDMIGIAQTGSGKTLSYLLPGLVHVGAQPRLEQGDGPIVLILAPTRELAVQIQQES  344

Query  67   FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS  126
             +     R   T + G          L R  +++I T   L   L    E  H  L   +
Sbjct  345  GKFGSYSRTRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDML----EGGHTNLRRVT  400

Query  127  LIVVDECHH  135
             +V+DE   
Sbjct  401  YLVLDEADR  409


>sp|A6SFV4|DBP8_BOTFB ATP-dependent RNA helicase dbp8 OS=Botryotinia 
fuckeliana (strain B05.10) OX=332648 GN=dbp8 PE=3 SV=1
Length=545

 Score = 121 bits (302),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 63/397 (16%), Positives = 121/397 (30%), Gaps = 45/397 (11%)

Query  163  VLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYN---  219
            +  L  +P    A ++      +     +L    I    +  PQ    +Q+P        
Sbjct  185  IFALVLTPTRELALQIYEQFKAISS-PQSLKAVLITGGSDMRPQATALAQRPHIVIATPG  243

Query  220  LCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRV  279
                  +    D +  L       L+  E  R   +      +  + E  ++     +R 
Sbjct  244  RLADHIRTSGEDTIGALRRVRMVVLD--EADRLLASGSVGSMLPDVEECLSILPPPAKRQ  301

Query  280  YALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELA  339
              L          +            L  F          I  +              L 
Sbjct  302  TLLFTATVTPE--VRALKDMPRTPGKLPVFVCEVDTQALAIPPS--------------LN  345

Query  340  HLATHGPENPKLEMLEKILQRQFSSSNSPRGI-IFTRTRQSAHSLLLWLQQQQGLQTVDI  398
             +    P   +   L   L    +  N P+ I IF     +A  L   L+          
Sbjct  346  QMHLQVPVTHREHYLHMFL---LTEKNLPKSIVIFCNRTATADYLTHLLR----------  392

Query  399  RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL  458
                L+    ++  + + QR + + + +F+     +LVAT VA  GLDIP   +V+ Y +
Sbjct  393  ----LLDHRVTALHSKLPQRQRIDNLGRFRASAARILVATDVAARGLDIPEVGLVINYDI  448

Query  459  LTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEA---LETLMEQAVAAVQKM  513
              +    +   GR ARA +   A     +   +L + + N     +E   E  V    ++
Sbjct  449  PRDPDDYIHRVGRTARAGRKGEAVSFVGQRDVQLIQAIENRVGRQMEAWAEDGVNLETRV  508

Query  514  DQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVE  550
             +   +      ++A L     +    + +R    + 
Sbjct  509  IRESLKLVGEKKREAMLEIEEGREVGGKRKRGMKKLS  545


 Score = 62.1 bits (149),  Expect = 1e-08, Method: Composition-based stats.
 Identities = 47/253 (19%), Positives = 85/253 (34%), Gaps = 23/253 (9%)

Query  15   LEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDG  73
            L+G++ I    TG+GKT A A  + ++  E   G   +VL     L  Q  E+F+ +   
Sbjct  151  LKGRDCIGGSRTGSGKTVAFAVPILQKWAEDPFGIFALVLTPTRELALQIYEQFKAISSP  210

Query  74   RW-TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDE  132
            +      ++G    R     LA+   ++I T   L   + +  E+    L    ++V+DE
Sbjct  211  QSLKAVLITGGSDMRPQATALAQRPHIVIATPGRLADHIRTSGEDTIGALRRVRMVVLDE  270

Query  133  CHHTHKDTVYNVIMSQYLELKLQRAQPLPQ-VLGLTA--------------SPGTGGASK  177
                        ++    E       P  +  L  TA              +PG      
Sbjct  271  ADRLLASGSVGSMLPDVEECLSILPPPAKRQTLLFTATVTPEVRALKDMPRTPGKLPVFV  330

Query  178  LDGAINHVLQLCANLDTWCIMSPQNCCPQ-----LQEHSQQPCKQYNLCHRRSQDPFGDL  232
             +     +  +  +L+   +  P           L      P      C+R +   +   
Sbjct  331  CEVDTQAL-AIPPSLNQMHLQVPVTHREHYLHMFLLTEKNLPKSIVIFCNRTATADYLTH  389

Query  233  LKKLMDQIHDHLE  245
            L +L+D     L 
Sbjct  390  LLRLLDHRVTALH  402


>sp|A7EYW0|DBP3_SCLS1 ATP-dependent RNA helicase dbp3 OS=Sclerotinia 
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 
GN=dbp3 PE=3 SV=2
Length=596

 Score = 121 bits (303),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 40/194 (21%), Positives = 75/194 (39%), Gaps = 23/194 (12%)

Query  350  KLEMLEKILQRQFSSS-NSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN  408
            K   L ++L++  S S    R ++F   ++ A  +  +++Q+              G   
Sbjct  414  KEYRLMQLLKQYQSGSQKDDRILVFCLYKKEATRVEGFIRQK--------------GFRV  459

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
            +     ++Q  +   ++ F+ G   +LVAT VA  GLDIP   +V+           V  
Sbjct  460  AGIHGDLSQEQRTRSLEAFKSGNTPVLVATDVAARGLDIPAVKLVINCTFPLTVEDYVHR  519

Query  469  RGR-ARADQSVYAF-VATEGSRELKRELI------NEALETLMEQAVAAVQKMDQAEYQA  520
             GR  RA +   A  + TE  +     LI      N+ +   + +    V+K     Y A
Sbjct  520  IGRTGRAGKDGLAITLFTEHDKAQSGALINVLKAANQPVPDELLKFGTTVKKKAHDAYGA  579

Query  521  KIRDLQQAALTKRA  534
              +++       + 
Sbjct  580  FFKNVDTTKKATKI  593


 Score = 47.9 bits (112),  Expect = 3e-04, Method: Composition-based stats.
 Identities = 24/127 (19%), Positives = 48/127 (38%), Gaps = 10/127 (8%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA------KVVVLVNRVHLVTQHGEEFR  68
            L G+++I    TG+GKT A A    R++ ++         + VV+     L  Q  E+  
Sbjct  214  LAGRDVIGVAETGSGKTMAFAVPCVRYMSSLPKNQKNKGPRAVVVSPTRELAMQSYEQIV  273

Query  69   RMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLI  128
            ++               P+       +  D+++ T   L   +     +   +L+    +
Sbjct  274  KLAKASGLECVCVYGGVPKDEQIRALKTADIVVATPGRLNDLIN----QGCADLSKARYV  329

Query  129  VVDECHH  135
            V+DE   
Sbjct  330  VLDEADR  336


>sp|Q7A0D2|CSHA_STAAW DEAD-box ATP-dependent RNA helicase CshA 
OS=Staphylococcus aureus (strain MW2) OX=196620 GN=cshA PE=3 
SV=1
Length=506

 Score = 120 bits (300),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 56/319 (18%), Positives = 107/319 (34%), Gaps = 40/319 (13%)

Query  248  ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYA----LHLRRYNDALLIHDTVRAVDAL  303
            ++   FG    E+Q+  L +   +      RV        L+      LI D    +  +
Sbjct  99   QVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNM  158

Query  304  AALQDFYH---------REHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEML  354
              + D            R+ +  +  +    + L     +  ++     +   +P++E  
Sbjct  159  GFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEF  218

Query  355  EKILQR---------QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
              I++                    I+F RT++    L   L  +              G
Sbjct  219  YTIVKELEKFDTFTNFLDVHQPELAIVFGRTKRRVDELTSALISK--------------G  264

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM  465
                     +TQ  + EV++KF++  +N+LVAT VA  GLDI   + V  + +  +  S 
Sbjct  265  YKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESY  324

Query  466  VQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD  524
                GR  RA +   A              I +A    M       +K      QA+  D
Sbjct  325  THRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDANGRKMSALRPPHRK---EVLQAREDD  381

Query  525  LQQAALTKRAAQAAQRENQ  543
            +++      + ++  R  +
Sbjct  382  IKEKVENWMSKESESRLKR  400


 Score = 53.6 bits (127),  Expect = 5e-06, Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 47/128 (37%), Gaps = 5/128 (4%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEE  66
            Q + I  AL+G +I+    TG GKT A        +    G + ++L     L  Q  E+
Sbjct  29   QKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVVGKQGVQSLILAPTRELAMQVAEQ  88

Query  67   FRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF  125
             R         V T+ G M        L +   +++ T   +   L        ++    
Sbjct  89   LREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRT----LKTDGI  144

Query  126  SLIVVDEC  133
              +++DE 
Sbjct  145  HTLILDEA  152


>sp|Q6G7M9|CSHA_STAAS DEAD-box ATP-dependent RNA helicase CshA 
OS=Staphylococcus aureus (strain MSSA476) OX=282459 GN=cshA 
PE=3 SV=1
Length=506

 Score = 120 bits (300),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 56/319 (18%), Positives = 107/319 (34%), Gaps = 40/319 (13%)

Query  248  ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYA----LHLRRYNDALLIHDTVRAVDAL  303
            ++   FG    E+Q+  L +   +      RV        L+      LI D    +  +
Sbjct  99   QVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNM  158

Query  304  AALQDFYH---------REHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEML  354
              + D            R+ +  +  +    + L     +  ++     +   +P++E  
Sbjct  159  GFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEF  218

Query  355  EKILQR---------QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
              I++                    I+F RT++    L   L  +              G
Sbjct  219  YTIVKELEKFDTFTNFLDVHQPELAIVFGRTKRRVDELTSALISK--------------G  264

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM  465
                     +TQ  + EV++KF++  +N+LVAT VA  GLDI   + V  + +  +  S 
Sbjct  265  YKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESY  324

Query  466  VQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD  524
                GR  RA +   A              I +A    M       +K      QA+  D
Sbjct  325  THRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDANGRKMSALRPPHRK---EVLQAREDD  381

Query  525  LQQAALTKRAAQAAQRENQ  543
            +++      + ++  R  +
Sbjct  382  IKEKVENWMSKESESRLKR  400


 Score = 53.6 bits (127),  Expect = 5e-06, Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 47/128 (37%), Gaps = 5/128 (4%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEE  66
            Q + I  AL+G +I+    TG GKT A        +    G + ++L     L  Q  E+
Sbjct  29   QKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVVGKQGVQSLILAPTRELAMQVAEQ  88

Query  67   FRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF  125
             R         V T+ G M        L +   +++ T   +   L        ++    
Sbjct  89   LREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRT----LKTDGI  144

Query  126  SLIVVDEC  133
              +++DE 
Sbjct  145  HTLILDEA  152


>sp|Q6GEZ3|CSHA_STAAR DEAD-box ATP-dependent RNA helicase CshA 
OS=Staphylococcus aureus (strain MRSA252) OX=282458 GN=cshA 
PE=3 SV=1
Length=506

 Score = 120 bits (300),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 56/319 (18%), Positives = 107/319 (34%), Gaps = 40/319 (13%)

Query  248  ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYA----LHLRRYNDALLIHDTVRAVDAL  303
            ++   FG    E+Q+  L +   +      RV        L+      LI D    +  +
Sbjct  99   QVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNM  158

Query  304  AALQDFYH---------REHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEML  354
              + D            R+ +  +  +    + L     +  ++     +   +P++E  
Sbjct  159  GFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEF  218

Query  355  EKILQR---------QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
              I++                    I+F RT++    L   L  +              G
Sbjct  219  YTIVKELEKFDTFTNFLDVHQPELAIVFGRTKRRVDELTSALISK--------------G  264

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM  465
                     +TQ  + EV++KF++  +N+LVAT VA  GLDI   + V  + +  +  S 
Sbjct  265  YKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESY  324

Query  466  VQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD  524
                GR  RA +   A              I +A    M       +K      QA+  D
Sbjct  325  THRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDANGRKMSALRPPHRK---EVLQAREDD  381

Query  525  LQQAALTKRAAQAAQRENQ  543
            +++      + ++  R  +
Sbjct  382  IKEKVENWMSKESESRLKR  400


 Score = 53.3 bits (126),  Expect = 5e-06, Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 47/128 (37%), Gaps = 5/128 (4%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEE  66
            Q + I  AL+G +I+    TG GKT A        +    G + ++L     L  Q  E+
Sbjct  29   QKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVVGKQGVQSLILAPTRELAMQVAEQ  88

Query  67   FRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF  125
             R         V T+ G M        L +   +++ T   +   L        ++    
Sbjct  89   LREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRT----LKTDGI  144

Query  126  SLIVVDEC  133
              +++DE 
Sbjct  145  HTLILDEA  152


>sp|Q7A4G0|CSHA_STAAN DEAD-box ATP-dependent RNA helicase CshA 
OS=Staphylococcus aureus (strain N315) OX=158879 GN=cshA PE=1 
SV=1
Length=506

 Score = 120 bits (300),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 56/319 (18%), Positives = 107/319 (34%), Gaps = 40/319 (13%)

Query  248  ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYA----LHLRRYNDALLIHDTVRAVDAL  303
            ++   FG    E+Q+  L +   +      RV        L+      LI D    +  +
Sbjct  99   QVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNM  158

Query  304  AALQDFYH---------REHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEML  354
              + D            R+ +  +  +    + L     +  ++     +   +P++E  
Sbjct  159  GFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEF  218

Query  355  EKILQR---------QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
              I++                    I+F RT++    L   L  +              G
Sbjct  219  YTIVKELEKFDTFTNFLDVHQPELAIVFGRTKRRVDELTSALISK--------------G  264

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM  465
                     +TQ  + EV++KF++  +N+LVAT VA  GLDI   + V  + +  +  S 
Sbjct  265  YKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESY  324

Query  466  VQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD  524
                GR  RA +   A              I +A    M       +K      QA+  D
Sbjct  325  THRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDANGRKMSALRPPHRK---EVLQAREDD  381

Query  525  LQQAALTKRAAQAAQRENQ  543
            +++      + ++  R  +
Sbjct  382  IKEKVENWMSKESESRLKR  400


 Score = 53.6 bits (127),  Expect = 5e-06, Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 47/128 (37%), Gaps = 5/128 (4%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEE  66
            Q + I  AL+G +I+    TG GKT A        +    G + ++L     L  Q  E+
Sbjct  29   QKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVVGKQGVQSLILAPTRELAMQVAEQ  88

Query  67   FRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF  125
             R         V T+ G M        L +   +++ T   +   L        ++    
Sbjct  89   LREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRT----LKTDGI  144

Query  126  SLIVVDEC  133
              +++DE 
Sbjct  145  HTLILDEA  152


>sp|Q99SH6|CSHA_STAAM DEAD-box ATP-dependent RNA helicase CshA 
OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) OX=158878 
GN=cshA PE=1 SV=1
Length=506

 Score = 120 bits (300),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 56/319 (18%), Positives = 107/319 (34%), Gaps = 40/319 (13%)

Query  248  ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYA----LHLRRYNDALLIHDTVRAVDAL  303
            ++   FG    E+Q+  L +   +      RV        L+      LI D    +  +
Sbjct  99   QVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNM  158

Query  304  AALQDFYH---------REHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEML  354
              + D            R+ +  +  +    + L     +  ++     +   +P++E  
Sbjct  159  GFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEF  218

Query  355  EKILQR---------QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
              I++                    I+F RT++    L   L  +              G
Sbjct  219  YTIVKELEKFDTFTNFLDVHQPELAIVFGRTKRRVDELTSALISK--------------G  264

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM  465
                     +TQ  + EV++KF++  +N+LVAT VA  GLDI   + V  + +  +  S 
Sbjct  265  YKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESY  324

Query  466  VQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD  524
                GR  RA +   A              I +A    M       +K      QA+  D
Sbjct  325  THRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDANGRKMSALRPPHRK---EVLQAREDD  381

Query  525  LQQAALTKRAAQAAQRENQ  543
            +++      + ++  R  +
Sbjct  382  IKEKVENWMSKESESRLKR  400


 Score = 53.6 bits (127),  Expect = 5e-06, Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 47/128 (37%), Gaps = 5/128 (4%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEE  66
            Q + I  AL+G +I+    TG GKT A        +    G + ++L     L  Q  E+
Sbjct  29   QKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVVGKQGVQSLILAPTRELAMQVAEQ  88

Query  67   FRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF  125
             R         V T+ G M        L +   +++ T   +   L        ++    
Sbjct  89   LREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRT----LKTDGI  144

Query  126  SLIVVDEC  133
              +++DE 
Sbjct  145  HTLILDEA  152


>sp|Q5HEB9|CSHA_STAAC DEAD-box ATP-dependent RNA helicase CshA 
OS=Staphylococcus aureus (strain COL) OX=93062 GN=cshA PE=3 
SV=1
Length=506

 Score = 120 bits (300),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 56/319 (18%), Positives = 107/319 (34%), Gaps = 40/319 (13%)

Query  248  ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYA----LHLRRYNDALLIHDTVRAVDAL  303
            ++   FG    E+Q+  L +   +      RV        L+      LI D    +  +
Sbjct  99   QVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNM  158

Query  304  AALQDFYH---------REHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEML  354
              + D            R+ +  +  +    + L     +  ++     +   +P++E  
Sbjct  159  GFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEF  218

Query  355  EKILQR---------QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
              I++                    I+F RT++    L   L  +              G
Sbjct  219  YTIVKELEKFDTFTNFLDVHQPELAIVFGRTKRRVDELTSALISK--------------G  264

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM  465
                     +TQ  + EV++KF++  +N+LVAT VA  GLDI   + V  + +  +  S 
Sbjct  265  YKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESY  324

Query  466  VQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD  524
                GR  RA +   A              I +A    M       +K      QA+  D
Sbjct  325  THRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDANGRKMSALRPPHRK---EVLQAREDD  381

Query  525  LQQAALTKRAAQAAQRENQ  543
            +++      + ++  R  +
Sbjct  382  IKEKVENWMSKESESRLKR  400


 Score = 53.6 bits (127),  Expect = 5e-06, Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 47/128 (37%), Gaps = 5/128 (4%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEE  66
            Q + I  AL+G +I+    TG GKT A        +    G + ++L     L  Q  E+
Sbjct  29   QKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVVGKQGVQSLILAPTRELAMQVAEQ  88

Query  67   FRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF  125
             R         V T+ G M        L +   +++ T   +   L        ++    
Sbjct  89   LREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRT----LKTDGI  144

Query  126  SLIVVDEC  133
              +++DE 
Sbjct  145  HTLILDEA  152


>sp|Q2YUH3|CSHA_STAAB DEAD-box ATP-dependent RNA helicase CshA 
OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) OX=273036 
GN=cshA PE=3 SV=1
Length=506

 Score = 120 bits (300),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 56/319 (18%), Positives = 107/319 (34%), Gaps = 40/319 (13%)

Query  248  ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYA----LHLRRYNDALLIHDTVRAVDAL  303
            ++   FG    E+Q+  L +   +      RV        L+      LI D    +  +
Sbjct  99   QVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNM  158

Query  304  AALQDFYH---------REHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEML  354
              + D            R+ +  +  +    + L     +  ++     +   +P++E  
Sbjct  159  GFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEF  218

Query  355  EKILQR---------QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
              I++                    I+F RT++    L   L  +              G
Sbjct  219  YTIVKELEKFDTFTNFLDVHQPELAIVFGRTKRRVDELTSALISK--------------G  264

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM  465
                     +TQ  + EV++KF++  +N+LVAT VA  GLDI   + V  + +  +  S 
Sbjct  265  YKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESY  324

Query  466  VQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD  524
                GR  RA +   A              I +A    M       +K      QA+  D
Sbjct  325  THRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDANGRKMSALRPPHRK---EVLQAREDD  381

Query  525  LQQAALTKRAAQAAQRENQ  543
            +++      + ++  R  +
Sbjct  382  IKEKVENWMSKESESRLKR  400


 Score = 56.7 bits (135),  Expect = 4e-07, Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 47/128 (37%), Gaps = 5/128 (4%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEE  66
            Q + I  AL+G +I+    TG GKT A        +    G + ++L     L  Q  E+
Sbjct  29   QKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVVWKQGVQSLILAPTRELAMQVAEQ  88

Query  67   FRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF  125
             R         V T+ G M        L +   +++ T   +   L        ++    
Sbjct  89   LREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRT----LKTDGI  144

Query  126  SLIVVDEC  133
              +++DE 
Sbjct  145  HTLILDEA  152


>sp|Q2FWH5|CSHA_STAA8 DEAD-box ATP-dependent RNA helicase CshA 
OS=Staphylococcus aureus (strain NCTC 8325 / PS 47) OX=93061 
GN=cshA PE=1 SV=1
Length=506

 Score = 120 bits (300),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 56/319 (18%), Positives = 107/319 (34%), Gaps = 40/319 (13%)

Query  248  ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYA----LHLRRYNDALLIHDTVRAVDAL  303
            ++   FG    E+Q+  L +   +      RV        L+      LI D    +  +
Sbjct  99   QVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNM  158

Query  304  AALQDFYH---------REHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEML  354
              + D            R+ +  +  +    + L     +  ++     +   +P++E  
Sbjct  159  GFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEF  218

Query  355  EKILQR---------QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
              I++                    I+F RT++    L   L  +              G
Sbjct  219  YTIVKELEKFDTFTNFLDVHQPELAIVFGRTKRRVDELTSALISK--------------G  264

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM  465
                     +TQ  + EV++KF++  +N+LVAT VA  GLDI   + V  + +  +  S 
Sbjct  265  YKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESY  324

Query  466  VQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD  524
                GR  RA +   A              I +A    M       +K      QA+  D
Sbjct  325  THRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDANGRKMSALRPPHRK---EVLQAREDD  381

Query  525  LQQAALTKRAAQAAQRENQ  543
            +++      + ++  R  +
Sbjct  382  IKEKVENWMSKESESRLKR  400


 Score = 53.6 bits (127),  Expect = 5e-06, Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 47/128 (37%), Gaps = 5/128 (4%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEE  66
            Q + I  AL+G +I+    TG GKT A        +    G + ++L     L  Q  E+
Sbjct  29   QKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVVGKQGVQSLILAPTRELAMQVAEQ  88

Query  67   FRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF  125
             R         V T+ G M        L +   +++ T   +   L        ++    
Sbjct  89   LREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRT----LKTDGI  144

Query  126  SLIVVDEC  133
              +++DE 
Sbjct  145  HTLILDEA  152


>sp|Q2FF45|CSHA_STAA3 DEAD-box ATP-dependent RNA helicase CshA 
OS=Staphylococcus aureus (strain USA300) OX=367830 GN=cshA 
PE=3 SV=1
Length=506

 Score = 120 bits (300),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 56/319 (18%), Positives = 107/319 (34%), Gaps = 40/319 (13%)

Query  248  ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYA----LHLRRYNDALLIHDTVRAVDAL  303
            ++   FG    E+Q+  L +   +      RV        L+      LI D    +  +
Sbjct  99   QVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNM  158

Query  304  AALQDFYH---------REHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEML  354
              + D            R+ +  +  +    + L     +  ++     +   +P++E  
Sbjct  159  GFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEF  218

Query  355  EKILQR---------QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
              I++                    I+F RT++    L   L  +              G
Sbjct  219  YTIVKELEKFDTFTNFLDVHQPELAIVFGRTKRRVDELTSALISK--------------G  264

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM  465
                     +TQ  + EV++KF++  +N+LVAT VA  GLDI   + V  + +  +  S 
Sbjct  265  YKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESY  324

Query  466  VQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD  524
                GR  RA +   A              I +A    M       +K      QA+  D
Sbjct  325  THRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDANGRKMSALRPPHRK---EVLQAREDD  381

Query  525  LQQAALTKRAAQAAQRENQ  543
            +++      + ++  R  +
Sbjct  382  IKEKVENWMSKESESRLKR  400


 Score = 53.6 bits (127),  Expect = 5e-06, Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 47/128 (37%), Gaps = 5/128 (4%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEE  66
            Q + I  AL+G +I+    TG GKT A        +    G + ++L     L  Q  E+
Sbjct  29   QKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVVGKQGVQSLILAPTRELAMQVAEQ  88

Query  67   FRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF  125
             R         V T+ G M        L +   +++ T   +   L        ++    
Sbjct  89   LREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRT----LKTDGI  144

Query  126  SLIVVDEC  133
              +++DE 
Sbjct  145  HTLILDEA  152


>sp|P38712|RRP3_YEAST ATP-dependent rRNA helicase RRP3 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 
GN=RRP3 PE=1 SV=2
Length=501

 Score = 120 bits (300),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 47/202 (23%), Positives = 83/202 (41%), Gaps = 25/202 (12%)

Query  346  PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
            P   K   L  +L      +     IIFTRT+ +A  L            ++  A  L G
Sbjct  304  PGGLKNTYLIYLLNEFIGKT----MIIFTRTKANAERLSGL------CNLLEFSATALHG  353

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM  465
                     + Q  +   +  F+ G  ++LVAT VA  GLDIP  ++VV Y +  +  S 
Sbjct  354  --------DLNQNQRMGSLDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSY  405

Query  466  VQARGR-ARADQSVYAF-VATEGSREL---KRELINEAL--ETLMEQAVAAVQKMDQAEY  518
            +   GR ARA +S  +  + ++   EL     E++ + L  E++ +  +  ++       
Sbjct  406  IHRVGRTARAGRSGKSISLVSQYDLELILRIEEVLGKKLPKESVDKNIILTLRDSVDKAN  465

Query  519  QAKIRDLQQAALTKRAAQAAQR  540
               + ++ +    K A    +R
Sbjct  466  GEVVMEMNRRNKEKIARGKGRR  487


 Score = 59.8 bits (143),  Expect = 5e-08, Method: Composition-based stats.
 Identities = 35/131 (27%), Positives = 49/131 (37%), Gaps = 5/131 (4%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q + I PALEG +II    TG+GKT A A  +  R     +     +L     L  Q  E
Sbjct  108  QSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLWHDQEPYYACILAPTRELAQQIKE  167

Query  66   EFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
             F  +        T + G M        L R   ++I T   L   L + +      L  
Sbjct  168  TFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHIIIATPGRLMDHLENTKG---FSLRK  224

Query  125  FSLIVVDECHH  135
               +V+DE   
Sbjct  225  LKFLVMDEADR  235


>sp|A1C5V3|DBP3_ASPCL ATP-dependent RNA helicase dbp3 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=dbp3 PE=3 SV=1
Length=503

 Score = 120 bits (300),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 37/196 (19%), Positives = 72/196 (37%), Gaps = 23/196 (12%)

Query  348  NPKLEMLEKILQRQFSSSNS-PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA  406
            + K   L ++L      + +  + ++F   ++ A  +   L+ +      + +   + G 
Sbjct  318  HDKEYRLVQLLSENQRGAAALDKVLVFCLYKKEAMRVERLLRNK------NFKVAGIHG-  370

Query  407  GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV  466
                    + Q ++ + +  F+ G   +LVAT VA  GLDIP   +V+           V
Sbjct  371  -------DLNQHERFKSLDAFKSGAATVLVATDVAARGLDIPSVKLVINVTFPLTVEDYV  423

Query  467  QARGR-ARADQSVYAF-VATEGSRELKRELIN------EALETLMEQAVAAVQKMDQAEY  518
               GR  RA     A  + TE  +     LIN      + +   + +    V+K     Y
Sbjct  424  HRIGRTGRAGAEGRAITLFTETDKAQSGALINVLKAAKQEVPQELLKFGTTVKKKQHGAY  483

Query  519  QAKIRDLQQAALTKRA  534
             A  ++        + 
Sbjct  484  GAFFKEADSGKSATKI  499


 Score = 46.7 bits (109),  Expect = 5e-04, Method: Composition-based stats.
 Identities = 23/129 (18%), Positives = 48/129 (37%), Gaps = 17/129 (13%)

Query  17   GKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKV---------VVLVNRVHLVTQHGEEF  67
            G+++I    TG+GKT A      +  + +D  K+         V++     L  Q  ++ 
Sbjct  122  GRDVIGIAETGSGKTLAFGLPCLK--KILDSGKIKFKNARPAAVIISPTRELAMQIYDQI  179

Query  68   RRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS  126
             +         T + G +        L +   +++ T   L+      + +  V+L    
Sbjct  180  SKYAGSIGIKATCIFGGVKKDEQREAL-KSAAIVVATPGRLKD----LQNDGSVDLGKVK  234

Query  127  LIVVDECHH  135
             +V+DE   
Sbjct  235  YLVLDEADR  243


>sp|P0CR00|RRP3_CRYNJ ATP-dependent rRNA helicase RRP3 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=RRP3 PE=3 SV=1
Length=484

 Score = 119 bits (299),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 39/139 (28%), Positives = 65/139 (47%), Gaps = 16/139 (12%)

Query  366  NSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQ  425
            +S   +IFTRT   +  L + L++              +G         MTQ  +   + 
Sbjct  276  SSSSMMIFTRTVADSQRLSIILRR--------------LGFPAIPLHGQMTQSLRLASLN  321

Query  426  KFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VA  483
            KF+ G  ++LVAT VA  GLDIP  ++V+ Y + TN    V   GR ARA +S  +  + 
Sbjct  322  KFKSGGRSILVATDVASRGLDIPLVDLVINYDMPTNSKDYVHRVGRTARAGRSGKSITLV  381

Query  484  TEGSRELKRELINEALETL  502
            T+   E+ + + +   + +
Sbjct  382  TQYDVEILQRIESHIGKKM  400


 Score = 63.3 bits (152),  Expect = 3e-09, Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 52/131 (40%), Gaps = 5/131 (4%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAY-VAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q E I  ALEGK+II    TG+GKT A +  + +   E       +VL     L  Q  +
Sbjct  65   QAEAIPHALEGKDIIGLAQTGSGKTAAFSLPILQTLWENPQPFFALVLAPTRELAYQISQ  124

Query  66   EFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
            +   +  G       L G M   +    L++   +++ T   L   L + +      L  
Sbjct  125  QVTSLGSGIGVRTAVLVGGMDMMSQSIALSKRPHIIVATPGRLMDHLENTKG---FSLKS  181

Query  125  FSLIVVDECHH  135
               +V+DE   
Sbjct  182  LKYLVMDEADR  192


>sp|P0CR01|RRP3_CRYNB ATP-dependent rRNA helicase RRP3 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=RRP3 PE=3 SV=1
Length=484

 Score = 119 bits (299),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 39/139 (28%), Positives = 65/139 (47%), Gaps = 16/139 (12%)

Query  366  NSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQ  425
            +S   +IFTRT   +  L + L++              +G         MTQ  +   + 
Sbjct  276  SSSSMMIFTRTVADSQRLSIILRR--------------LGFPAIPLHGQMTQSLRLASLN  321

Query  426  KFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VA  483
            KF+ G  ++LVAT VA  GLDIP  ++V+ Y + TN    V   GR ARA +S  +  + 
Sbjct  322  KFKSGGRSILVATDVASRGLDIPLVDLVINYDMPTNSKDYVHRVGRTARAGRSGKSITLV  381

Query  484  TEGSRELKRELINEALETL  502
            T+   E+ + + +   + +
Sbjct  382  TQYDVEILQRIESHIGKKM  400


 Score = 63.3 bits (152),  Expect = 3e-09, Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 52/131 (40%), Gaps = 5/131 (4%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAY-VAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q E I  ALEGK+II    TG+GKT A +  + +   E       +VL     L  Q  +
Sbjct  65   QAEAIPHALEGKDIIGLAQTGSGKTAAFSLPILQTLWENPQPFFALVLAPTRELAYQISQ  124

Query  66   EFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
            +   +  G       L G M   +    L++   +++ T   L   L + +      L  
Sbjct  125  QVTSLGSGIGVRTAVLVGGMDMMSQSIALSKRPHIIVATPGRLMDHLENTKG---FSLKS  181

Query  125  FSLIVVDECHH  135
               +V+DE   
Sbjct  182  LKYLVMDEADR  192


>sp|Q4I662|DBP8_GIBZE ATP-dependent RNA helicase DBP8 OS=Gibberella 
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / 
NRRL 31084 / PH-1) OX=229533 GN=DBP8 PE=3 SV=1
Length=547

 Score = 120 bits (300),  Expect = 3e-27, Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 80/216 (37%), Gaps = 22/216 (10%)

Query  338  LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD  397
            L  +    P   K   L   L     ++     I+F     +A  L   L+  +      
Sbjct  344  LKQMYIKVPVTHKEHYLHTFLLT--EANVDKTVILFCNRTSTADYLHHLLRMLE------  395

Query  398  IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG  457
                       +S  + + QR + + + +F+     +LVAT VA  GLDIP  ++V+ Y 
Sbjct  396  --------HRVTSLHSKLPQRQRIDNLARFRASAARILVATDVAARGLDIPEVSLVINYD  447

Query  458  LLTNEISMVQARGR-ARADQSVYAF-VATEGSRELK---RELINEALETLMEQAVAAVQK  512
            L  +    +   GR ARA +   A     +   EL     + +   +E   E+ V    +
Sbjct  448  LPRDPDDYIHRVGRTARAGRKGEAVSFVGQRDVELALTIEKRVGRDMEAWEEEGVNLETR  507

Query  513  MDQAEYQAKIRDLQQAALT-KRAAQAAQRENQRQQF  547
            + +   +      ++A L  +   +   +  + +Q 
Sbjct  508  VVRDALKLVSEKKREALLEVEEGREVGGKRKRTKQK  543


 Score = 60.2 bits (144),  Expect = 4e-08, Method: Composition-based stats.
 Identities = 28/123 (23%), Positives = 50/123 (41%), Gaps = 2/123 (2%)

Query  15   LEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDG  73
            L+G++ I    TG+GKT A A  + ++  E       VVL     L  Q  E+F+ +   
Sbjct  151  LKGRDCIGGSRTGSGKTMAFAVPILQKWSEDPTAIFAVVLTPTRELALQIFEQFKAISSP  210

Query  74   RW-TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDE  132
            +      ++G    R     + +   ++I T   L   + +  E+    L     +V+DE
Sbjct  211  QSLKAILVTGGSDMRTQAIEIGKRPHVIIATPGRLADHIRTSGEDTICGLRRVRYVVLDE  270

Query  133  CHH  135
               
Sbjct  271  ADR  273


>sp|Q0INC5|RH28_ORYSJ DEAD-box ATP-dependent RNA helicase 28 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os12g0481100 PE=2 
SV=2
Length=802

 Score = 121 bits (303),  Expect = 3e-27, Method: Composition-based stats.
 Identities = 75/397 (19%), Positives = 142/397 (36%), Gaps = 46/397 (12%)

Query  186  LQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLE  245
              +C +  T    +     P L+    +P K+          P  +L  ++   I    +
Sbjct  232  RDICGSAITGSGKTAAFSLPVLERLLFRP-KRVPAIRVLILTPTRELAAQVHSMIEKLAQ  290

Query  246  MPELS--RKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDAL  303
              ++      G    + Q V L     +      R+   HLR      L    +  +D  
Sbjct  291  FTDIRCCLIVGGLSTKVQEVALRSMPDIVVATPGRIID-HLRNSLSVGLEDLAILILDEA  349

Query  304  AALQDFYHREHVTKTQILCAERRLLALFD----DRKNELAHLATHGPE----NPKLEM--  353
              L +      + +   +C  RR   LF     +  NEL  L+ + P     +P L+   
Sbjct  350  DRLLELGFSAEIQELIRMCPRRRQTMLFSATMTEEINELVTLSLNKPVRLEADPSLKRPA  409

Query  354  -LEK---------------ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD  397
             L +               +L      +   + IIF+ T+ SAH L +            
Sbjct  410  TLTEEVVRIRRAREANQEAVLLALCLKTFKDKVIIFSGTKHSAHRLKIIFG---------  460

Query  398  IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG  457
                 L G   +    ++TQ  + E ++ F+   ++ L+AT VA  G+DI     V+ + 
Sbjct  461  -----LSGMKAAELHGNLTQAQRLEALELFKKQEVDFLIATDVAARGIDIVGVRTVINFS  515

Query  458  LLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQ  515
               +  + +   GR ARA +  YA    T+  R L + +  +A   L  + VA     + 
Sbjct  516  CPRDARTYLHRVGRTARAGREGYAVTFVTDDDRSLLKAIAKKAGSQLKSRIVAEKPVAEC  575

Query  516  AEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHV  552
            A+   ++ D     + +   +   R+ + +    E++
Sbjct  576  AKLIEELEDQISTIIQEEREERILRKAEMEATKAENM  612


 Score = 52.9 bits (125),  Expect = 8e-06, Method: Composition-based stats.
 Identities = 46/299 (15%), Positives = 98/299 (33%), Gaps = 27/299 (9%)

Query  14   ALEGKNIIIWLPTGAGKTRAAAYVAKRHL----ETVDGAKVVVLVNRVHLVTQHGEEFRR  69
            AL G++I     TG+GKT A +      L    + V   +V++L     L  Q      +
Sbjct  228  ALTGRDICGSAITGSGKTAAFSLPVLERLLFRPKRVPAIRVLILTPTRELAAQVHSMIEK  287

Query  70   MLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLI  128
            +          + G +  +     L    D+++ T   +   L +      V L   +++
Sbjct  288  LAQFTDIRCCLIVGGLSTKVQEVALRSMPDIVVATPGRIIDHLRNSLS---VGLEDLAIL  344

Query  129  VVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQL  188
            ++DE     +      I         +R   L      +A+        +  ++N  ++L
Sbjct  345  ILDEADRLLELGFSAEIQELIRMCPRRRQTML-----FSATMTEEINELVTLSLNKPVRL  399

Query  189  CANLDTWCIMSPQNCCPQLQ--EHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEM  246
             A+       +      +++    + Q      LC +  +D        +          
Sbjct  400  EADPSLKRPATLTEEVVRIRRAREANQEAVLLALCLKTFKDK-----VIIFSGTKHSAHR  454

Query  247  PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHD-TVRAVDALA  304
             ++          +    L++A  L  L+      L  ++  D L+  D   R +D + 
Sbjct  455  LKIIFGLSGMKAAELHGNLTQAQRLEALE------LFKKQEVDFLIATDVAARGIDIVG  507


>sp|Q0U8V9|DBP8_PHANO ATP-dependent RNA helicase DBP8 OS=Phaeosphaeria 
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) 
OX=321614 GN=DBP8 PE=3 SV=1
Length=508

 Score = 119 bits (299),  Expect = 3e-27, Method: Composition-based stats.
 Identities = 61/389 (16%), Positives = 132/389 (34%), Gaps = 39/389 (10%)

Query  149  YLELKLQRAQPLPQ-VLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQL  207
            +    LQ+    P  + GL  +P    A ++   +  +     ++    +    +   Q 
Sbjct  131  FSVPILQKWAEDPSGIFGLIITPTRELAIQIYEQVKAISA-PQSMKPILVTGGSDQREQA  189

Query  208  QEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSE  267
               + +P        R ++         +         + + + +         +  +  
Sbjct  190  IALASRPHVVIATPGRLAEHIKTSGEDTICGLRRVRFVVFDEADRLLAPGRGSMIPDIET  249

Query  268  AAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRL  327
              ++   +EQR   L        +L    +++          +  E  T+T    A    
Sbjct  250  CLSVLPPKEQRQTLLFTATVTPEVL---ALKSQPRAPGRLPIFVCEVDTETLATPA----  302

Query  328  LALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWL  387
                      L+ L    P   K   L  +L    + + S   IIF    ++A  L   L
Sbjct  303  ---------SLSQLYLQTPVTHKECYLHVLLLTPLNLTKS--VIIFCNRTKTATLLEYML  351

Query  388  QQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDI  447
            +              ++    ++  + + Q+D+   + +F+     +LVAT VA  GLDI
Sbjct  352  R--------------MLDHRVTALHSGLKQQDRISNLARFRAQAARILVATDVAARGLDI  397

Query  448  PHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQA  506
            P   +VV + +  +    +   GR ARA +   +     G R+++  L   A+E  +   
Sbjct  398  PEVGLVVNFDVPRDPDDYIHRVGRTARAGRPGNSVTFI-GQRDVELVL---AIEERVGGK  453

Query  507  VAAVQKMDQAEYQAKIRDLQQAALTKRAA  535
            ++  ++   +     +RD  +    K+  
Sbjct  454  MSEFEEEGVSVEGRVVRDALKIVTEKKRE  482


 Score = 52.9 bits (125),  Expect = 7e-06, Method: Composition-based stats.
 Identities = 47/251 (19%), Positives = 83/251 (33%), Gaps = 20/251 (8%)

Query  15   LEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDG  73
            L+G++ I    TG GKT A +  + ++  E   G   +++     L  Q  E+ + +   
Sbjct  112  LKGRDCIGGSRTGTGKTVAFSVPILQKWAEDPSGIFGLIITPTRELAIQIYEQVKAISAP  171

Query  74   RWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDE  132
            +      ++G    R     LA    ++I T   L   + +  E+    L     +V DE
Sbjct  172  QSMKPILVTGGSDQREQAIALASRPHVVIATPGRLAEHIKTSGEDTICGLRRVRFVVFDE  231

Query  133  CHHTHKDTVYNVIMS-----QYLELKLQRAQPL------PQVLGLTASPGTGGASKLDGA  181
                      ++I         L  K QR   L      P+VL L + P   G   +   
Sbjct  232  ADRLLAPGRGSMIPDIETCLSVLPPKEQRQTLLFTATVTPEVLALKSQPRAPGRLPIFVC  291

Query  182  INHVLQLC--ANLDTWCIMSPQNCCP-----QLQEHSQQPCKQYNLCHRRSQDPFGDLLK  234
                  L   A+L    + +P           L             C+R       + + 
Sbjct  292  EVDTETLATPASLSQLYLQTPVTHKECYLHVLLLTPLNLTKSVIIFCNRTKTATLLEYML  351

Query  235  KLMDQIHDHLE  245
            +++D     L 
Sbjct  352  RMLDHRVTALH  362


>sp|Q9CWX9|DDX47_MOUSE Probable ATP-dependent RNA helicase DDX47 
OS=Mus musculus OX=10090 GN=Ddx47 PE=2 SV=2
Length=455

 Score = 119 bits (297),  Expect = 3e-27, Method: Composition-based stats.
 Identities = 51/275 (19%), Positives = 96/275 (35%), Gaps = 25/275 (9%)

Query  275  QEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDR  334
            +  R+  +      D +L          L +       + + +  +    +  ++     
Sbjct  175  EADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQT  234

Query  335  KNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQ  394
              +L       P   K   L  IL     +S     +IF  T  +     L L+      
Sbjct  235  VEKLQQYYLFIPSKFKDTYLVYILNELAGNSF----MIFCSTCNNTQRTALLLRN-----  285

Query  395  TVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV  454
                     +G         M+Q  +   + KF+    ++L+AT VA  GLDIPH +VVV
Sbjct  286  ---------LGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVV  336

Query  455  RYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQK  512
             + + T+    +   GR ARA +S  A    T+   EL +      +E L+ + +     
Sbjct  337  NFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQR-----IEHLIGKKLPVFPT  391

Query  513  MDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQF  547
             D+       R  +     +   +    + +R++ 
Sbjct  392  QDEEVMMLTERVNEAQRFARMELREHGEKKKRKRE  426


 Score = 62.9 bits (151),  Expect = 5e-09, Method: Composition-based stats.
 Identities = 67/435 (15%), Positives = 134/435 (31%), Gaps = 54/435 (12%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT-RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q E I  AL+G++II    TG+GKT   A  +    LET      +VL     L  Q  E
Sbjct  51   QIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISE  110

Query  66   EFRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
            +F  +          + G +   +    LA+   ++I T   L   L + +      L  
Sbjct  111  QFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKG---FNLRA  167

Query  125  FSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQ---VLGLTASPGTGGASKLDGA  181
               +V+DE           ++   +     +  + +P+       +A+           A
Sbjct  168  LKYLVMDEADR--------ILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAA  219

Query  182  INHVLQLCANLDTWCIMSPQNCCPQLQE--HSQQPCKQYNLCHRRSQDPFGDLLKKLMDQ  239
            + + ++        C +S +    +  +  +   P K  +       +        +   
Sbjct  220  LKNPVK--------CAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCS  271

Query  240  IHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDA------LLI  293
              ++ +   L  +           ++S++  L  L + +  A  +    D       +  
Sbjct  272  TCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPH  331

Query  294  HDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPE-NPKLE  352
             D V   D     +D+ HR   T       +             +  +  +  E   ++E
Sbjct  332  VDVVVNFDIPTHSKDYIHRVGRTARAGRSGKA------------ITFVTQYDVELFQRIE  379

Query  353  MLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL--------LI  404
             L       F + +    ++ T     A        ++ G +    R            I
Sbjct  380  HLIGKKLPVFPTQDEE-VMMLTERVNEAQRFARMELREHGEKKKRKREDAGDDDDKEGAI  438

Query  405  GAGNSSQSTHMTQRD  419
            G  N      M +R 
Sbjct  439  GVRNKVAGGKMKKRK  453


>sp|Q9SQV1|RH40_ARATH DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis 
thaliana OX=3702 GN=RH40 PE=2 SV=1
Length=1088

 Score = 121 bits (304),  Expect = 3e-27, Method: Composition-based stats.
 Identities = 46/170 (27%), Positives = 69/170 (41%), Gaps = 21/170 (12%)

Query  346  PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
            P+  K   LE+IL+ Q       + IIF  T++    L   + +                
Sbjct  662  PQMEKERRLEQILRSQ---ERGSKVIIFCSTKRLCDHLARSVGRH---------------  703

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM  465
             G        TQ ++  V+ +F+ G   +L+AT VA  GLDI    VV+ Y   T     
Sbjct  704  FGAVVIHGDKTQGERDWVLNQFRSGKSCVLIATDVAARGLDIKDIRVVINYDFPTGVEDY  763

Query  466  VQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKM  513
            V   GR  RA  +  AF   TE   +   +LI + LE   +Q    V+ +
Sbjct  764  VHRIGRTGRAGATGVAFTFFTEQDWKYAPDLI-KVLEGANQQVPPQVRDI  812


 Score = 71.8 bits (174),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 68/315 (22%), Positives = 107/315 (34%), Gaps = 33/315 (10%)

Query  14   ALEGKNIIIWLPTGAGKT---RAAAYVAKRHLETV--DGAKVVVLVNRVHLVTQ-HGEEF  67
            AL+ ++I+    TG+GKT      A++  RH      +G  V++L     L TQ   E  
Sbjct  469  ALQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSRNGPTVLILAPTRELATQIQDEAL  528

Query  68   RRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSL  127
            R     R + T L G          L R  D+++ T   L   L    E + ++    SL
Sbjct  529  RFGRSSRISCTCLYGGAPKGPQLKELERGADIVVATPGRLNDIL----EMKMIDFQQVSL  584

Query  128  IVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS-PGTGGASKLDGAINHVL  186
            +V+DE            I     E+  +R     Q L  TA+ P        D  +N V 
Sbjct  585  LVLDEADRMLDMGFEPQIRKIVNEIPPRR-----QTLMYTATWPKEVRKIASDLLVNPVQ  639

Query  187  QLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEM  246
                N+     ++      Q  E   Q  K+  L         G  +            +
Sbjct  640  V---NIGRVDELAANKAITQYVEVVPQMEKERRLEQILRSQERGSKVIIFCSTKRLCDHL  696

Query  247  PE-LSRKFG--------TQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTV  297
               + R FG        TQ     V+    +     L    V A  L   +  ++I+   
Sbjct  697  ARSVGRHFGAVVIHGDKTQGERDWVLNQFRSGKSCVLIATDVAARGLDIKDIRVVIN---  753

Query  298  RAVDALAALQDFYHR  312
               D    ++D+ HR
Sbjct  754  --YDFPTGVEDYVHR  766


>sp|A7E436|DBP8_SCLS1 ATP-dependent RNA helicase dbp8 OS=Sclerotinia 
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 
GN=dbp8 PE=3 SV=1
Length=540

 Score = 119 bits (299),  Expect = 3e-27, Method: Composition-based stats.
 Identities = 68/395 (17%), Positives = 133/395 (34%), Gaps = 41/395 (10%)

Query  163  VLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCH  222
            +  L  +P    A ++      +     +L    I    +  PQ    +Q+P        
Sbjct  180  IFALVLTPTRELALQIYEQFKAISS-PQSLKAVLITGGSDMRPQATALAQRPHVVIATP-  237

Query  223  RRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYAL  282
                   G L   +     D +      R       ++ +   S  + L  ++E      
Sbjct  238  -------GRLADHIRTSGEDTVCALRRVRMVVLDEADRLLASGSVGSMLPDVEE---CLS  287

Query  283  HLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLA  342
             L   ++   +  T      + AL+D      + K  +   E    AL     + L  + 
Sbjct  288  LLPPPSERQTLLFTATVTPEVRALKDM--PRTLGKPPVFVCEVDTQAL--AIPSSLNQMH  343

Query  343  THGPENPKLEMLEKILQRQFSSSNSPRGI-IFTRTRQSAHSLLLWLQQQQGLQTVDIRAQ  401
               P   +   L   L    +  N P+ I IF     +A  L   L+             
Sbjct  344  LQVPVTHREHYLHMFL---LTEKNLPKSIVIFCNRTATADYLTHLLR-------------  387

Query  402  LLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN  461
             L+    ++  + + QR + + + +F+     +LVAT VA  GLDIP   +V+ Y +  +
Sbjct  388  -LLEHRVTALHSKLPQRQRIDNLGRFRASAARILVATDVAARGLDIPEVGLVINYDVPRD  446

Query  462  EISMVQARGR-ARADQSVYAFVATEGSRELK-----RELINEALETLMEQAVAAVQKMDQ  515
                +   GR ARA +   A     G R+++      + +   +E   E+ V    ++ +
Sbjct  447  PDDYIHRVGRTARAGRKGEAVTFV-GQRDVQLILAIEKRVGRQMEAWTEEGVNLETRVIR  505

Query  516  AEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVE  550
               +      ++A L     +    + +R    + 
Sbjct  506  ESLKLVGEKKREAMLEIEEGREVGGKRKRGMKKLS  540


 Score = 64.8 bits (156),  Expect = 1e-09, Method: Composition-based stats.
 Identities = 44/252 (17%), Positives = 85/252 (34%), Gaps = 21/252 (8%)

Query  15   LEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDG  73
            L+G++ I    TG+GKT A A  + ++  E   G   +VL     L  Q  E+F+ +   
Sbjct  146  LKGRDCIGGSRTGSGKTVAFAVPILQKWAEDPFGIFALVLTPTRELALQIYEQFKAISSP  205

Query  74   RW-TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDE  132
            +      ++G    R     LA+   ++I T   L   + +  E+    L    ++V+DE
Sbjct  206  QSLKAVLITGGSDMRPQATALAQRPHVVIATPGRLADHIRTSGEDTVCALRRVRMVVLDE  265

Query  133  CHHTHKDTVYNVIMSQYLELKLQRAQPLPQ---VLGLTASPGTGGASKLDGAINH-----  184
                        ++    E       P  +   +   T +P       +   +       
Sbjct  266  ADRLLASGSVGSMLPDVEECLSLLPPPSERQTLLFTATVTPEVRALKDMPRTLGKPPVFV  325

Query  185  ------VLQLCANLDTWCIMSPQNCCPQ-----LQEHSQQPCKQYNLCHRRSQDPFGDLL  233
                   L + ++L+   +  P           L      P      C+R +   +   L
Sbjct  326  CEVDTQALAIPSSLNQMHLQVPVTHREHYLHMFLLTEKNLPKSIVIFCNRTATADYLTHL  385

Query  234  KKLMDQIHDHLE  245
             +L++     L 
Sbjct  386  LRLLEHRVTALH  397


>sp|A1DG51|DBP3_NEOFI ATP-dependent RNA helicase dbp3 OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / 
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dbp3 
PE=3 SV=1
Length=503

 Score = 119 bits (298),  Expect = 4e-27, Method: Composition-based stats.
 Identities = 40/194 (21%), Positives = 75/194 (39%), Gaps = 23/194 (12%)

Query  350  KLEMLEKILQRQFSSSNS-PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN  408
            K   L ++L R    +    + ++F   ++ A  +   L+      T + +   + G   
Sbjct  320  KEARLVQLLNRSQRGAAVCDKVLVFCLYKKEAVRVERLLR------TKNFKVAGIHG---  370

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
                  + Q ++ + ++ F+ G   +LVAT VA  GLDIP   +V+           V  
Sbjct  371  -----DLNQHERFKSLEAFKTGAATVLVATDVAARGLDIPSVKLVINVTFPLTVEDYVHR  425

Query  469  RGR-ARADQSVYAF-VATEGSRELKRELIN------EALETLMEQAVAAVQKMDQAEYQA  520
             GR  RA    +A  + TE  +     LIN      + +   + +    V+K     Y A
Sbjct  426  IGRTGRAGADGHAITLFTETDKAQSGALINVLRAAKQDVPDALLKFGTTVKKKQHGAYGA  485

Query  521  KIRDLQQAALTKRA  534
              +D+  +    + 
Sbjct  486  FFKDVDTSKSATKI  499


 Score = 47.1 bits (110),  Expect = 5e-04, Method: Composition-based stats.
 Identities = 24/128 (19%), Positives = 50/128 (39%), Gaps = 15/128 (12%)

Query  17   GKNIIIWLPTGAGKTRAAAYV--AKRHLETVDGAK------VVVLVNRVHLVTQHGEEFR  68
            G+++I    TG+GKT  A  +   K+ L++    +       V++     L  Q  ++  
Sbjct  122  GRDVIGIAETGSGKTL-AFGLPCIKKILDSGKVKRKHARPAAVIISPTRELAMQIYDQLS  180

Query  69   RMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSL  127
            +        VT + G +        L +   +++ T   L+      + +  V+L     
Sbjct  181  KFGASVDIRVTCIYGGVKKDEQREAL-KTAAIVVATPGRLKD----LQNDGSVDLGKVKY  235

Query  128  IVVDECHH  135
            +V+DE   
Sbjct  236  LVLDEADR  243


>sp|Q9H0S4|DDX47_HUMAN Probable ATP-dependent RNA helicase DDX47 
OS=Homo sapiens OX=9606 GN=DDX47 PE=1 SV=1
Length=455

 Score = 118 bits (296),  Expect = 4e-27, Method: Composition-based stats.
 Identities = 61/387 (16%), Positives = 122/387 (32%), Gaps = 26/387 (7%)

Query  163  VLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCH  222
            ++GL  +      +     +N +L+    L    +   +    Q+ E   +         
Sbjct  64   IIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQF-EALGSSIGVQ  122

Query  223  RRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYAL  282
                    D + + +        +     +    +   +   L     L   +  R+  +
Sbjct  123  SAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNM  182

Query  283  HLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLA  342
                  D +L          L +       + + +  +    +  ++       +L    
Sbjct  183  DFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYY  242

Query  343  THGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL  402
               P   K   L  IL     +S     +IF  T  +     L L+              
Sbjct  243  IFIPSKFKDTYLVYILNELAGNSF----MIFCSTCNNTQRTALLLRN-------------  285

Query  403  LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE  462
             +G         M+Q  +   + KF+    ++L+AT VA  GLDIPH +VVV + + T+ 
Sbjct  286  -LGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHS  344

Query  463  ISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA  520
               +   GR ARA +S  A    T+   EL +      +E L+ + +      D      
Sbjct  345  KDYIHRVGRTARAGRSGKAITFVTQYDVELFQR-----IEHLIGKKLPGFPTQDDEVMML  399

Query  521  KIRDLQQAALTKRAAQAAQRENQRQQF  547
              R  +     +   +    + +R + 
Sbjct  400  TERVAEAQRFARMELREHGEKKKRSRE  426


 Score = 64.0 bits (154),  Expect = 2e-09, Method: Composition-based stats.
 Identities = 67/435 (15%), Positives = 134/435 (31%), Gaps = 54/435 (12%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT-RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q E I  AL+G++II    TG+GKT   A  +    LET      +VL     L  Q  E
Sbjct  51   QIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISE  110

Query  66   EFRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
            +F  +          + G +   +    LA+   ++I T   L   L + +      L  
Sbjct  111  QFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKG---FNLRA  167

Query  125  FSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQ---VLGLTASPGTGGASKLDGA  181
               +V+DE           ++   +     +  + +P+       +A+           A
Sbjct  168  LKYLVMDEADR--------ILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAA  219

Query  182  INHVLQLCANLDTWCIMSPQNCCPQLQE--HSQQPCKQYNLCHRRSQDPFGDLLKKLMDQ  239
            + + ++        C +S +    +  +  +   P K  +       +        +   
Sbjct  220  LKNPVK--------CAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGNSFMIFCS  271

Query  240  IHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDA------LLI  293
              ++ +   L  +           ++S++  L  L + +  A  +    D       +  
Sbjct  272  TCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPH  331

Query  294  HDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPE-NPKLE  352
             D V   D     +D+ HR   T       +             +  +  +  E   ++E
Sbjct  332  VDVVVNFDIPTHSKDYIHRVGRTARAGRSGKA------------ITFVTQYDVELFQRIE  379

Query  353  MLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL--------LI  404
             L       F + +    ++ T     A        ++ G +    R            I
Sbjct  380  HLIGKKLPGFPTQDDE-VMMLTERVAEAQRFARMELREHGEKKKRSREDAGDNDDTEGAI  438

Query  405  GAGNSSQSTHMTQRD  419
            G  N      M +R 
Sbjct  439  GVRNKVAGGKMKKRK  453


>sp|Q49Z29|CSHA_STAS1 DEAD-box ATP-dependent RNA helicase CshA 
OS=Staphylococcus saprophyticus subsp. saprophyticus (strain 
ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41) OX=342451 
GN=cshA PE=3 SV=1
Length=506

 Score = 119 bits (297),  Expect = 5e-27, Method: Composition-based stats.
 Identities = 61/361 (17%), Positives = 113/361 (31%), Gaps = 52/361 (14%)

Query  213  QPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLE--MPELSRKFGTQMYEQQVVKLSEAAA  270
            +              P  +L  ++ + +    +    ++   FG    ++Q+  L +   
Sbjct  62   EKVADQEGVQSLILAPTRELAMQVAESLKAFAKGQNIQVVTVFGGMPIDRQIKALKKGPQ  121

Query  271  LAGLQEQRVYA----LHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERR  326
            +      RV        L+  +   LI D    +  +  + D            + AE+R
Sbjct  122  IVVGTPGRVIDHLNRRTLKTNDIHTLILDEADEMMNMGFIDDMKFIMD-----KIPAEQR  176

Query  327  LLALFD----DRKNELAHLATHGPENPK-----------------LEMLEKI--LQRQFS  363
               LF          L       P   K                 ++ LEK         
Sbjct  177  QTMLFSATMPKAIQTLVQQFMKSPVIVKTMNNEMSDPQIEEYYTIVKELEKFDTFTSFLD  236

Query  364  SSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEV  423
                   I+F RT++    L   L  +              G         +TQ  + EV
Sbjct  237  VHQPELAIVFGRTKRRVDELTSALISK--------------GYKAEGLHGDITQAKRLEV  282

Query  424  IQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFV  482
            ++KF++  L++LVAT VA  GLDI   + V  + +  +  S     GR  RA +   A  
Sbjct  283  LKKFKNDQLDILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKKGVAIT  342

Query  483  ATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQREN  542
                   ++ + I +  +    Q  A      +   +A+  D++       +     R  
Sbjct  343  FVN---PIEMDYIRQIEQANKRQMTALRPPHRKEVLKARENDIKGKVQNWMSRDNEPRLQ  399

Query  543  Q  543
            +
Sbjct  400  R  400


 Score = 56.0 bits (133),  Expect = 8e-07, Method: Composition-based stats.
 Identities = 29/128 (23%), Positives = 50/128 (39%), Gaps = 5/128 (4%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEE  66
            Q E I  ALEGK+++    TG GKT A        +   +G + ++L     L  Q  E 
Sbjct  29   QKESIPLALEGKDVLGQAQTGTGKTGAFGIPLIEKVADQEGVQSLILAPTRELAMQVAES  88

Query  67   FRRMLDGRW-TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF  125
             +    G+   V T+ G M        L +   +++ T   +   L        ++    
Sbjct  89   LKAFAKGQNIQVVTVFGGMPIDRQIKALKKGPQIVVGTPGRVIDHLNRRT----LKTNDI  144

Query  126  SLIVVDEC  133
              +++DE 
Sbjct  145  HTLILDEA  152


>sp|Q29S22|DDX47_BOVIN Probable ATP-dependent RNA helicase DDX47 
OS=Bos taurus OX=9913 GN=DDX47 PE=2 SV=1
Length=457

 Score = 118 bits (295),  Expect = 6e-27, Method: Composition-based stats.
 Identities = 52/277 (19%), Positives = 95/277 (34%), Gaps = 25/277 (9%)

Query  275  QEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDR  334
            +  R+  +      D +L          L +       + + +  +    +  ++     
Sbjct  177  EADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQT  236

Query  335  KNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQ  394
              +L       P   K   L  IL     +S     +IF  T  +     L L+      
Sbjct  237  VEKLQQYYLFIPSKFKDTYLVYILNELAGNSF----MIFCSTCNNTQRTALLLRN-----  287

Query  395  TVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV  454
                     +G         M+Q  +   + KF+    ++L+AT VA  GLDIPH +VVV
Sbjct  288  ---------LGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVV  338

Query  455  RYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQK  512
             + + T+    +   GR ARA +S  A    T+   EL +      +E L+ + +     
Sbjct  339  NFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQR-----IEHLIGKKLPVFPT  393

Query  513  MDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPV  549
             D        R  +     +   +    + +R +  V
Sbjct  394  QDDEVMMLTERVTEAQRFARMELREHGEKKKRSREDV  430


 Score = 62.5 bits (150),  Expect = 7e-09, Method: Composition-based stats.
 Identities = 67/435 (15%), Positives = 135/435 (31%), Gaps = 54/435 (12%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT-RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q E I  AL+G++II    TG+GKT   A  +    LET      +VL     L  Q  E
Sbjct  53   QIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISE  112

Query  66   EFRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
            +F  +          + G +   +    LA+   ++I T   L   L + +      L  
Sbjct  113  QFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKG---FNLRA  169

Query  125  FSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQ---VLGLTASPGTGGASKLDGA  181
               +V+DE           ++   +     +  + +P+       +A+           A
Sbjct  170  LKYLVMDEADR--------ILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAA  221

Query  182  INHVLQLCANLDTWCIMSPQNCCPQLQE--HSQQPCKQYNLCHRRSQDPFGDLLKKLMDQ  239
            + + ++        C +S +    +  +  +   P K  +       +        +   
Sbjct  222  LKNPVK--------CAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCS  273

Query  240  IHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDA------LLI  293
              ++ +   L  +           ++S++  L  L + +  A  +    D       +  
Sbjct  274  TCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPH  333

Query  294  HDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPE-NPKLE  352
             D V   D     +D+ HR   T       +             +  +  +  E   ++E
Sbjct  334  VDVVVNFDIPTHSKDYIHRVGRTARAGRSGKA------------ITFVTQYDVELFQRIE  381

Query  353  MLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL--------LI  404
             L       F + +    ++ T     A        ++ G +    R  +         I
Sbjct  382  HLIGKKLPVFPTQDDE-VMMLTERVTEAQRFARMELREHGEKKKRSREDVGDNDDTEGAI  440

Query  405  GAGNSSQSTHMTQRD  419
            G  N      M +R 
Sbjct  441  GVRNKVAGGKMKKRK  455


>sp|Q2UMH8|DBP3_ASPOR ATP-dependent RNA helicase dbp3 OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=dbp3 
PE=3 SV=1
Length=498

 Score = 118 bits (296),  Expect = 6e-27, Method: Composition-based stats.
 Identities = 39/209 (19%), Positives = 73/209 (35%), Gaps = 23/209 (11%)

Query  335  KNELAHLATHGPENPKLEMLEKILQRQFSSSNSP-RGIIFTRTRQSAHSLLLWLQQQQGL  393
               +  +      + K   L ++L R       P + + F   ++ A  +   L+ +   
Sbjct  300  NTRIKQVVEVVKPHEKESRLVQLLNRSQRGVPEPEKVLAFCLYKKEAMRIERLLRTK---  356

Query  394  QTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV  453
                       G   +     ++Q+++   +  F+ G   +LVAT VA  GLDIP    V
Sbjct  357  -----------GFKVAGIHGDLSQQERFRSLDAFKTGAATVLVATDVAARGLDIPSVKQV  405

Query  454  VRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELIN------EALETLMEQ  505
            +           V   GR  RA    +A  + TE  +     LIN      + +   + +
Sbjct  406  INVTFPLTVEDYVHRIGRTGRAGAEGHAVTLFTETDKAQSGALINVLRAAKQDIPEDLLK  465

Query  506  AVAAVQKMDQAEYQAKIRDLQQAALTKRA  534
                V+K     Y A  +++       + 
Sbjct  466  FGTTVKKKQHDAYGAFFKNVDTDKTATKI  494


 Score = 45.2 bits (105),  Expect = 0.002, Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 46/127 (36%), Gaps = 13/127 (10%)

Query  17   GKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK-------VVVLVNRVHLVTQHGEEFRR  69
            G+++I    TG+GKT A      + ++     K        V++     L  Q  ++  +
Sbjct  117  GRDVIGIAETGSGKTLAFGLPCLKKIQDSAMTKQKPYRPLAVIISPTRELAMQIYDQLLK  176

Query  70   MLDGR-WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLI  128
                    V  + G +        L +   +++ T   L+      + +  V+L     +
Sbjct  177  FSGSVGVRVACVFGGVRKEEQREAL-KTAGVVVATPGRLKD----LQNDGSVDLGKVKYL  231

Query  129  VVDECHH  135
            V+DE   
Sbjct  232  VLDEADR  238


>sp|Q8L4E9|RH36_ORYSJ DEAD-box ATP-dependent RNA helicase 36 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os07g0633500 PE=3 
SV=1
Length=501

 Score = 118 bits (295),  Expect = 7e-27, Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 80/219 (37%), Gaps = 18/219 (8%)

Query  338  LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD  397
            L  L  H P + K   L  +L +  +  N    I+F  T ++   L   L++        
Sbjct  293  LKQLYIHVPPDAKELYLFYLLSKM-NEDNIRSVIVFVSTCRTCQYLDFLLEE--------  343

Query  398  IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG  457
                  +G    S  +H  Q  +   +  F+   + +L+AT VA  GLDI   ++V+ Y 
Sbjct  344  ------LGHPAVSLHSHKPQSRRLAALHNFKSSKVPVLLATDVASRGLDIQTVDLVINYD  397

Query  458  LLTNEISMVQARGR-ARADQSV--YAFVATEGSRELKRELINEALETLMEQAVAAVQKMD  514
            +       +   GR ARA +     +F+ T+    L  E+ +   + L            
Sbjct  398  VPRYPRDYIHRVGRTARATRGGLSISFITTQRDIRLLHEIEDVVGKQLGAYDGEMRDVNK  457

Query  515  QAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQ  553
             A    K R L    +     +   +  + Q+   +  +
Sbjct  458  DATKVFKARRLANMKMADEGHEDKVQARKEQKKRAQERK  496


 Score = 53.3 bits (126),  Expect = 6e-06, Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 45/131 (34%), Gaps = 3/131 (2%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE  65
            Q   I  ALEG++++    TG+GKT A A      L         + L     L  Q  E
Sbjct  104  QRRCIPRALEGRDVLGIAETGSGKTAAFALPILHRLGEDPYGVAALALAPTRELAAQLAE  163

Query  66   EFRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
            +FR +            G          LAR   +++ T   +   +    +   V    
Sbjct  164  QFRALGAPLGLRCLAAIGGFDSLGQAKGLARRPHVVVATPGRIATLINDDPDLAKV-FAR  222

Query  125  FSLIVVDECHH  135
               +V+DE   
Sbjct  223  TKFLVLDEADR  233


>sp|Q9DF35|DD21A_XENLA Nucleolar RNA helicase 2-A OS=Xenopus laevis 
OX=8355 GN=ddx21-a PE=2 SV=2
Length=759

 Score = 120 bits (300),  Expect = 8e-27, Method: Composition-based stats.
 Identities = 62/316 (20%), Positives = 111/316 (35%), Gaps = 50/316 (16%)

Query  204  CPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVV  263
              +     QQP  +          P  +L  ++ ++I    +  ++S  +G   Y+QQV 
Sbjct  237  LVEKLNEDQQPLARGRAPRVIILTPTRELAIQITNEIRSITKKLKVSCFYGGTPYQQQVF  296

Query  264  KLSEAAALAGLQEQRVYALHLRRYND-----ALLIHDTVRAVD------ALAALQDFYHR  312
             + +          RV  L      D      +++ +     D          L   Y  
Sbjct  297  AIKDGIDFLVGTPGRVRDLVQNYRLDLTTLKHVVLDEVDMMFDMGFSEQVEEILSVRYKA  356

Query  313  EHVTKTQILC------------AERRLLALFDD----------RKNELAHLATHGPENPK  350
            +     Q L             A++ +   F+               + HLA     + K
Sbjct  357  DPEENPQTLLFSATCPDWMYNMAKKYMRKQFEKIDLIGHRSQKAATTVEHLAIECTRSQK  416

Query  351  LEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSS  410
              +L  ++Q    S +  + IIF  ++  AH+L                   L      S
Sbjct  417  AAVLGDLVQVY--SGSHGKTIIFCDSKLEAHTLAT-------------SCGSL-KQSAKS  460

Query  411  QSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARG  470
                + Q++++ V++ F+ GT  +L+AT+VA  GLDIP  ++VV Y       + V   G
Sbjct  461  LHGDLQQKEREVVLKGFRQGTFEVLIATNVAARGLDIPEVDLVVLYSAPKEADAYVHRSG  520

Query  471  R-ARADQSVYAFVATE  485
            R  RA ++       E
Sbjct  521  RTGRAGRTGVCISLYE  536


 Score = 48.3 bits (113),  Expect = 3e-04, Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 53/133 (40%), Gaps = 12/133 (9%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRH------LETVDGAKVVVLVNRVHL  59
            Q +    A  GK++++   TG GKT + A  + ++       L      +V++L     L
Sbjct  206  QSKTFHTAYSGKDVVVQARTGTGKTFSFAIPLVEKLNEDQQPLARGRAPRVIILTPTREL  265

Query  60   VTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
              Q   E R +   +  V+   G    +     +    D L+ T   ++  + +      
Sbjct  266  AIQITNEIRSITK-KLKVSCFYGGTPYQQQVFAIKDGIDFLVGTPGRVRDLVQNYR----  320

Query  120  VELTVFSLIVVDE  132
            ++LT    +V+DE
Sbjct  321  LDLTTLKHVVLDE  333


>sp|Q59W52|PRP28_CANAL Pre-mRNA-splicing ATP-dependent RNA helicase 
PRP28 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) 
OX=237561 GN=PRP28 PE=3 SV=2
Length=581

 Score = 119 bits (297),  Expect = 9e-27, Method: Composition-based stats.
 Identities = 37/156 (24%), Positives = 66/156 (42%), Gaps = 15/156 (10%)

Query  329  ALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQ  388
               D+       L++   E  K   L KI++  +  + +P  IIF   +    SL     
Sbjct  403  EALDNISQSFEFLSSATTEATKFNKLIKIIRSHWRVTENPLIIIFANFKHVCDSLS----  458

Query  389  QQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIP  448
              Q L + DI   ++ G+         +Q  +++ I  F++    +L+AT VA  G+DIP
Sbjct  459  --QELSSNDINNVVIHGSK--------SQDMREQAITNFRNHESEVLIATDVAARGIDIP  508

Query  449  HCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVA  483
            +  +V+ Y ++      +   GR  RA     +F  
Sbjct  509  NVTLVINYQMVKKFDEYIHRIGRTGRAGNLGESFTF  544


 Score = 45.6 bits (106),  Expect = 0.001, Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 53/136 (39%), Gaps = 19/136 (14%)

Query  14   ALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-----KV------VVLVNRVHLVTQ  62
            AL+ ++++    TG+GKT A       ++ ++D       K+      ++L     L  Q
Sbjct  202  ALKKRDVVGVAETGSGKTLAFLIPVLNYILSIDENYLKYEKISNEPVGLILAPTRELALQ  261

Query  63   ---HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
                 E+F + L  +  +  + G                L++ T   L  ++    E + 
Sbjct  262  ITKEAEKFCKKLGYQV-LPIIGGHHYQDTINKIDQTGVHLIVATPGRLVDSI----ERKI  316

Query  120  VELTVFSLIVVDECHH  135
            V+L+    +V+DE   
Sbjct  317  VDLSKCYCLVMDEADR  332


>sp|P0CQ92|DRS1_CRYNJ ATP-dependent RNA helicase DRS1 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=DRS1 PE=3 SV=2
Length=793

 Score = 119 bits (299),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 58/294 (20%), Positives = 109/294 (37%), Gaps = 52/294 (18%)

Query  289  DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFD----DRKNELAHLATH  344
            D L+I +  R ++A          + + +    C   R   LF     D  +EL  L+  
Sbjct  359  DVLVIDEADRMLEA-------GFTDELEEIIKACPRSRQTMLFSATMTDSVDELVKLSLD  411

Query  345  GP----ENPKLEMLEKILQRQFSSSNSP----------------RGIIFTRTRQSAHSLL  384
             P     +PK      + Q      +                  + IIF R++  AH + 
Sbjct  412  KPIRVFVDPKRNTARGLTQEFVRIRSDDSRSPSLLALCKRTIREKCIIFFRSKALAHQMR  471

Query  385  LWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEG  444
            +                 L G   +    ++TQ  + + +  F+ GT++ L+AT +A  G
Sbjct  472  IVFG--------------LFGLKAAELHGNLTQEQRLQALNDFKAGTVDYLLATDLASRG  517

Query  445  LDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETL  502
            LDI     V+ Y +           GR ARA +   +  +  E  R++ +  I +A    
Sbjct  518  LDIKGVETVINYDMPGQLAQYTHRVGRTARAGRKGRSVSLVGEADRKMLKAAIKQAEADQ  577

Query  503  MEQAVAAVQ-----KMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEH  551
            +   +   +     K    E++  I+++ +    ++  + A  E ++ Q  VEH
Sbjct  578  VRHRIIPSEAVTAMKEKLEEFKDDIQEILKEEKEEKLLRQADMEIKKGQNMVEH  631


 Score = 52.9 bits (125),  Expect = 1e-05, Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 48/138 (35%), Gaps = 12/138 (9%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK------VVVLVNRVHLV  60
            Q   I  AL G++I+    TG+GKT A        L   D  K      V+VL     L 
Sbjct  234  QARAIPLALLGRDILGSAVTGSGKTAAFMVPILERLCYRDRGKGGAACRVLVLCPTRELA  293

Query  61   TQHG---EEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE  117
             Q     +              L G +   A    L    D+LI T   L   LT+    
Sbjct  294  VQCEAVGKALAEKGGLDVRFALLVGGLSLNAQAHTLRTLPDILIATPGRLIDHLTNTPS-  352

Query  118  EHVELTVFSLIVVDECHH  135
                L+   ++V+DE   
Sbjct  353  --FTLSALDVLVIDEADR  368


>sp|Q5HK76|HSDR_STAEQ Type I restriction enzyme SepRPIP endonuclease 
subunit OS=Staphylococcus epidermidis (strain ATCC 35984 
/ DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A) 
OX=176279 GN=hsdR PE=3 SV=1
Length=930

 Score = 120 bits (300),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 43/185 (23%), Positives = 70/185 (38%), Gaps = 18/185 (10%)

Query  1    MELRSYQWEVIM----PALE-GKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVN  55
            M LR YQ   +      ALE   N  IW  TG+GKT  +   ++   +  +  KV+ LV+
Sbjct  239  MALRPYQVYAVEAILNRALETNNNGYIWHTTGSGKTLTSFKASQLLSQEENIKKVIFLVD  298

Query  56   RVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE  115
            R  L  Q   EF +  +     T  +  +  +     L     L++ T + +  A+ S  
Sbjct  299  RKDLDNQTLAEFNKFQEDSVDFTDNTRKLLKQLADPTLP----LIVTTIQKMANAVKSNH  354

Query  116  EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGA  175
                       + ++DECH T    ++ +I   +            Q  G T +P     
Sbjct  355  SVMESYKQDKVIFIIDECHRTQFGDMHRLIKQHF---------ENAQYFGFTGTPRFEEN  405

Query  176  SKLDG  180
               DG
Sbjct  406  KSQDG  410


>sp|A1D6X9|DBP8_NEOFI ATP-dependent RNA helicase dbp8 OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / 
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dbp8 
PE=3 SV=1
Length=526

 Score = 118 bits (295),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 47/209 (22%), Positives = 82/209 (39%), Gaps = 23/209 (11%)

Query  338  LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD  397
            L       P   +   L  +L      + S   IIF    ++A  L   L++        
Sbjct  324  LKQTYLKVPLTHREAFLHVLLST--EDNASRPAIIFCNHTKTADLLERMLRR--------  373

Query  398  IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG  457
                  +    +S  + + Q ++   + +F+     +LVAT VA  GLDIP  ++V+ Y 
Sbjct  374  ------LTHRVTSLHSLLPQSERNANLARFRASAARILVATDVASRGLDIPTVSLVINYD  427

Query  458  LLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQA  516
            +  N    V   GR ARA +S  A     G R+++  L   A+E  + + +    +   +
Sbjct  428  VPRNPDDYVHRVGRTARAGRSGEAITLV-GQRDVQLVL---AIEERVGRQMEEWSEEGVS  483

Query  517  EYQAKIRD--LQQAALTKRAAQAAQRENQ  543
                 +R   L++    KR A     E +
Sbjct  484  IEGRLVRTGVLKEVGEAKREAMGEIDEGR  512


 Score = 55.6 bits (132),  Expect = 1e-06, Method: Composition-based stats.
 Identities = 42/257 (16%), Positives = 81/257 (32%), Gaps = 27/257 (11%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYV--AKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLD  72
            L+G++ I    TG+GKT  A  V   ++  E   G   VVL     L  Q  E+ + +  
Sbjct  131  LKGRDCIGGSRTGSGKT-IAFSVPMLQKWAEDPFGIFGVVLTPTRELALQIFEQIKAISA  189

Query  73   GRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVD  131
             +      ++G    R     LA    ++I T   L   + S  E+    L    ++V+D
Sbjct  190  PQSMKPVLITGGTDMRPQAIALAGRPHVVIATPGRLADHIKSSGEDTVCGLKRVRMVVLD  249

Query  132  ECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS-----------PGTGGASKL--  178
            E          +++      L         Q L  TA+           P +     +  
Sbjct  250  EADRLLASGPGSMLPDVETCLSALPPSSERQTLLFTATVTPEVRALKNMPRSANKPPVFV  309

Query  179  -DGAINHVLQLCANLDTWCIMSPQNCCPQLQE-------HSQQPCKQYNLCHRRSQDPFG  230
             + +  +   +   L    +  P                ++ +P   +  C+        
Sbjct  310  TEISTENQGSIPPTLKQTYLKVPLTHREAFLHVLLSTEDNASRPAIIF--CNHTKTADLL  367

Query  231  DLLKKLMDQIHDHLEMP  247
            + + + +      L   
Sbjct  368  ERMLRRLTHRVTSLHSL  384


>sp|P0CQ93|DRS1_CRYNB ATP-dependent RNA helicase DRS1 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=DRS1 PE=3 SV=1
Length=808

 Score = 119 bits (299),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 58/294 (20%), Positives = 109/294 (37%), Gaps = 52/294 (18%)

Query  289  DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFD----DRKNELAHLATH  344
            D L+I +  R ++A          + + +    C   R   LF     D  +EL  L+  
Sbjct  374  DVLVIDEADRMLEA-------GFTDELEEIIKACPRSRQTMLFSATMTDSVDELVKLSLD  426

Query  345  GP----ENPKLEMLEKILQRQFSSSNSP----------------RGIIFTRTRQSAHSLL  384
             P     +PK      + Q      +                  + IIF R++  AH + 
Sbjct  427  KPIRVFVDPKRNTARGLTQEFVRIRSDDSRSPSLLALCKRTIREKCIIFFRSKALAHQMR  486

Query  385  LWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEG  444
            +                 L G   +    ++TQ  + + +  F+ GT++ L+AT +A  G
Sbjct  487  IVFG--------------LFGLKAAELHGNLTQEQRLQALNDFKAGTVDYLLATDLASRG  532

Query  445  LDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETL  502
            LDI     V+ Y +           GR ARA +   +  +  E  R++ +  I +A    
Sbjct  533  LDIKGVETVINYDMPGQLAQYTHRVGRTARAGRKGRSVSLVGEADRKMLKAAIKQAEADQ  592

Query  503  MEQAVAAVQ-----KMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEH  551
            +   +   +     K    E++  I+++ +    ++  + A  E ++ Q  VEH
Sbjct  593  VRHRIIPSEAVTAMKEKLEEFKDDIQEILKEEKEEKLLRQADMEIKKGQNMVEH  646


 Score = 52.5 bits (124),  Expect = 1e-05, Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 48/138 (35%), Gaps = 12/138 (9%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK------VVVLVNRVHLV  60
            Q   I  AL G++I+    TG+GKT A        L   D  K      V+VL     L 
Sbjct  249  QARAIPLALLGRDILGSAVTGSGKTAAFMVPILERLCYRDRGKGGAACRVLVLCPTRELA  308

Query  61   TQHG---EEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE  117
             Q     +              L G +   A    L    D+LI T   L   LT+    
Sbjct  309  VQCEAVGKALAEKGGLDVRFALLVGGLSLNAQAHTLRTLPDILIATPGRLIDHLTNTPS-  367

Query  118  EHVELTVFSLIVVDECHH  135
                L+   ++V+DE   
Sbjct  368  --FTLSALDVLVIDEADR  383


>sp|Q887N8|RHLB_PSESM ATP-dependent RNA helicase RhlB OS=Pseudomonas 
syringae pv. tomato (strain ATCC BAA-871 / DC3000) OX=223283 
GN=rhlB PE=3 SV=1
Length=397

 Score = 116 bits (290),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 57/337 (17%), Positives = 120/337 (36%), Gaps = 56/337 (17%)

Query  205  PQLQEHSQQPCKQYNLCHR-RSQDPFGDLLKKLMDQIHDHLEMPELS--RKFGTQMYEQQ  261
             +    +  P ++Y    R     P  +L+ ++     D  +   L+     G   +++Q
Sbjct  67   IEQLTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQ  126

Query  262  VVKLSEA-AALAGLQEQRVYALHLRRYN-----DALLIHDTVRAVDALAALQDFYHREHV  315
            + +L      +      R+   + R        + +++ +  R +D +  +     R+ +
Sbjct  127  LKQLEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLD-MGFIPQ--VRQII  183

Query  316  TKTQILCAERRLL--ALFDDRKNELAHLATHGPENPKLEML-------------------  354
             +T      + LL  A F +    LA   T  P   ++E L                   
Sbjct  184  RQTPHKGERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAGADK  243

Query  355  EKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH  414
             K+L    + +   R ++F   +     +   L +               G   +  S  
Sbjct  244  YKLLYNLVTDNGWERVMVFANRKDEVRRIEERLVRD--------------GVNAAQLSGD  289

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR---GR  471
            + Q  + + ++ F++G + +LVAT VA  G+ I   + V+ + L       V      GR
Sbjct  290  VPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGR  349

Query  472  ARADQSVYAFVATEGSRELKRELINEALETLMEQAVA  508
            A AD    +F   + S +L       A+E  + + ++
Sbjct  350  AGADGVSISFAGEDDSYQLP------AIEEKLGRKIS  380


 Score = 50.6 bits (119),  Expect = 3e-05, Method: Composition-based stats.
 Identities = 29/140 (21%), Positives = 49/140 (35%), Gaps = 16/140 (11%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG--------AKVVVLVNRVH  58
            Q  V+   L+GK+ I    TG GKT A        L              + +++     
Sbjct  35   QAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQLTQTPPPAERYMGEPRALIIAPTRE  94

Query  59   LVTQ---HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE  115
            LV Q      +  +  +    +T + G    +      AR  D+L+ T   L        
Sbjct  95   LVVQIAKDAADLTKYTNLNV-MTFVGGMDFDKQLKQLEARHCDILVATPGRLLD----FN  149

Query  116  EEEHVELTVFSLIVVDECHH  135
            +   V L +  ++V+DE   
Sbjct  150  QRGEVHLDMVEVMVLDEADR  169


>sp|Q88NB7|RHLB_PSEPK ATP-dependent RNA helicase RhlB OS=Pseudomonas 
putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 
11950 / KT2440) OX=160488 GN=rhlB PE=3 SV=1
Length=398

 Score = 116 bits (290),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 52/337 (15%), Positives = 109/337 (32%), Gaps = 48/337 (14%)

Query  208  QEHSQQPCKQYNLCHR-RSQDPFGDLLKKLMDQIHDHLEMPELS--RKFGTQMYEQQVVK  264
             + +  P ++Y    R     P  +L+ ++        +   L+     G   +++Q+  
Sbjct  71   LQQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMSFVGGMDFDKQLKA  130

Query  265  LSEA-AALAGLQEQRVYALHLRRYN-----DALLIHDTVRAVDALAALQDFYHREHVTKT  318
            L      +      R+   + R        + +++ +  R +D +  +         T  
Sbjct  131  LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLD-MGFIPQVRQIIRQTPP  189

Query  319  QILCAERRLLALFDDRKNELAHLATHGPENPKLE-------------------MLEKILQ  359
            +         A F D    LA   T  P   ++E                      K+L 
Sbjct  190  KSERQTLLFSATFTDDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAGSDKYKLLY  249

Query  360  RQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRD  419
               + +   R ++F   +     +   L +               G   +  S  + Q  
Sbjct  250  NLVTQNKWERVMVFANRKDEVRRIEEKLVRD--------------GINAAQLSGDVPQHK  295

Query  420  QQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSV  478
            +   ++ F++G + +LVAT VA  G+ I   + V+ + L  +    V   GR  RA  S 
Sbjct  296  RIRTLESFREGRITVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGTSG  355

Query  479  YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQ  515
             +          +      A+E L+ + +      D+
Sbjct  356  VSISFAGEDDSYQ----LPAIEALLGRKIKCEMPPDE  388


 Score = 51.7 bits (122),  Expect = 2e-05, Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 47/141 (33%), Gaps = 18/141 (13%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK--------VVVLVNRVH  58
            Q +V+   L G++ I    TG GKT A        L+     K         +++     
Sbjct  36   QAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIISQLQQTPPPKERYMGEPRALIIAPTRE  95

Query  59   LVTQ---HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCH-DLLICTAELLQMALTSP  114
            LV Q         +       V +  G M        L   H D+L+ T   L       
Sbjct  96   LVVQIAKDAAALTKYTGL--NVMSFVGGMDFDKQLKALEARHCDILVATPGRLLD----F  149

Query  115  EEEEHVELTVFSLIVVDECHH  135
             +   V L +  ++V+DE   
Sbjct  150  NQRGEVHLDMVEVMVLDEADR  170


>sp|A5DU73|PRP28_LODEL Pre-mRNA-splicing ATP-dependent RNA helicase 
PRP28 OS=Lodderomyces elongisporus (strain ATCC 11503 
/ CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) OX=379508 
GN=PRP28 PE=3 SV=1
Length=597

 Score = 118 bits (296),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 35/160 (22%), Positives = 66/160 (41%), Gaps = 16/160 (10%)

Query  329  ALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQ  388
               D+      +L+T+  E+ +L  L K++Q     + +   IIF   +     L L L+
Sbjct  424  EALDNIDQHFDYLSTYA-ESARLSKLIKVVQGHKRRNRNALVIIFANFKHVCDVLSLELE  482

Query  389  QQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIP  448
            Q   L              N       +Q  ++E ++ F+     +LVAT VA  G+D+P
Sbjct  483  QNNLL--------------NVVIHGSKSQEAREEALEDFRTHQAPILVATDVAARGIDVP  528

Query  449  HCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGS  487
            + ++V+ Y +       +   GR  RA     ++   + +
Sbjct  529  NVSLVINYQMSKKFDEYIHRIGRTGRAGNLGESYTFLDDA  568


 Score = 47.5 bits (111),  Expect = 3e-04, Method: Composition-based stats.
 Identities = 26/139 (19%), Positives = 51/139 (37%), Gaps = 21/139 (15%)

Query  14   ALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-----------KVVVLVNRVHLVTQ  62
            +LE ++++    TG+GKT A       +L  VDG              +VL     L  Q
Sbjct  219  SLELRDVVGVAETGSGKTLAFLLPLLHYLSRVDGNYLNYEKVRNEPLALVLAPTRELALQ  278

Query  63   HGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLA-----RCHDLLICTAELLQMALTSPEE  116
              +E  +      + V ++ G    +     +      R   +++ T   L  ++    E
Sbjct  279  ITQEAEKFGKQLGFNVLSIIGGRQYQETMDQIDNMIVGRGVHIVVGTPGRLLDSV----E  334

Query  117  EEHVELTVFSLIVVDECHH  135
             + +  +    +V+DE   
Sbjct  335  RKILNFSKCYYLVMDEADR  353


>sp|Q4JG17|VASAL_PENVA Probable ATP-dependent RNA helicase vasa-like 
OS=Penaeus vannamei OX=6689 GN=vasa PE=2 SV=2
Length=703

 Score = 119 bits (298),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 36/158 (23%), Positives = 66/158 (42%), Gaps = 17/158 (11%)

Query  346  PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
            P+  K   L ++ +    S++  + ++F   ++ A  +  +L +++       RA  + G
Sbjct  495  PKFEKKAKLVEMCEEILISADDEKILVFVEQKRVADFVGTYLCEKK------FRATTMHG  548

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM  465
                       Q  +++ + +F+ G  N+LVAT+V   GLDI    VVV Y L  +    
Sbjct  549  --------DRYQAQREQALSEFRTGVHNILVATAVTARGLDIKGIGVVVNYDLPKDIDEY  600

Query  466  VQARGRARA---DQSVYAFVATEGSRELKRELINEALE  500
            V   GR           +F   E    L ++L+    E
Sbjct  601  VHRIGRTGRLGNRGLSISFYDDETDACLTKDLVKVLSE  638


 Score = 47.1 bits (110),  Expect = 5e-04, Method: Composition-based stats.
 Identities = 31/142 (22%), Positives = 49/142 (35%), Gaps = 19/142 (13%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRH-LETVDGAKVV---------VLVNR  56
            Q   I   + G++I+    TG+GKT A       + L+    +            V+   
Sbjct  288  QKYTIPNVMNGRDIMACAQTGSGKTAAFLLPMLHYILDNNCPSNAFEEPAQPTGLVICPT  347

Query  57   VHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCH---DLLICTAELLQMALTS  113
              L  Q   E R+      +V       G  AGF  L   H    +L+ T   L   L  
Sbjct  348  RELAIQIMREARKFS--HSSVAKCCVAYGGAAGFHQLKTIHSGCHILVATPGRLLDFL--  403

Query  114  PEEEEHVELTVFSLIVVDECHH  135
              E+  +  +    +V+DE   
Sbjct  404  --EKGKIVFSSLKYLVLDEADR  423


>sp|A5DF03|PRP28_PICGU Pre-mRNA-splicing ATP-dependent RNA helicase 
PRP28 OS=Meyerozyma guilliermondii (strain ATCC 6260 / 
CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 
GN=PRP28 PE=3 SV=2
Length=575

 Score = 118 bits (296),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 55/352 (16%), Positives = 117/352 (33%), Gaps = 29/352 (8%)

Query  145  IMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLD-TWCIMSPQNC  203
            I   Y+E++ ++   L +VLGL  +P    A ++        +  + L      +   + 
Sbjct  215  IDKDYMEVEHKQESNLNKVLGLVLAPTRELALQIS---KEAKKFASVLGYNVVTIIGGHQ  271

Query  204  CPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVV  263
              +  +  Q           R  D     L  L    H  ++  +     G +   Q ++
Sbjct  272  YEETVKSVQDGAHIVVATPGRLIDSAEKGLIDLSQCYHLTMDEADRMIDMGFEKALQSIL  331

Query  264  KLSEAAALAGLQEQRVY---ALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQI  320
                + + +G             +     A +     +          + +     +   
Sbjct  332  SFLPSTSSSGFGLDSTIFKVKSRITLMFTATISPPIEKITKDYLQTPAYLYIGDAGEIVD  391

Query  321  LCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSA  380
               ++      +    E  +        P+   +   L++    +  P  IIF   +++ 
Sbjct  392  NINQKFEYLGDNVDSQEELNA-------PRTNKMISALRQHIRETEQPLIIIFANFKRTC  444

Query  381  HSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSV  440
              L + L  Q     + I                 +Q  ++  I  F++  +N+L+AT V
Sbjct  445  ELLSVELSNQNVGSNIVIHGS-------------KSQEARESAIASFREHKVNVLIATDV  491

Query  441  AEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSREL  490
            A  G+DIP+ ++VV Y +       +   GR  RA +S  +     +G  E+
Sbjct  492  AARGIDIPNVSLVVNYHMPKRFDEYIHRIGRTGRAGKSGASLSFVDDGDSEI  543


 Score = 41.7 bits (96),  Expect = 0.021, Method: Composition-based stats.
 Identities = 26/145 (18%), Positives = 50/145 (34%), Gaps = 20/145 (14%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKV---------------V  51
            Q   I  AL  ++++    TG+GKT A       +L  +D   +               +
Sbjct  177  QRAAIPTALGHRDVVGIAETGSGKTLAFLIPLLSYLSAIDKDYMEVEHKQESNLNKVLGL  236

Query  52   VLVNRVHLVTQHGEEFRRM-LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMA  110
            VL     L  Q  +E ++      + V T+ G          +     +++ T   L   
Sbjct  237  VLAPTRELALQISKEAKKFASVLGYNVVTIIGGHQYEETVKSVQDGAHIVVATPGRLID-  295

Query  111  LTSPEEEEHVELTVFSLIVVDECHH  135
                 E+  ++L+    + +DE   
Sbjct  296  ---SAEKGLIDLSQCYHLTMDEADR  317


>sp|Q2GUI4|DBP3_CHAGB ATP-dependent RNA helicase DBP3 OS=Chaetomium 
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 
6347 / NRRL 1970) OX=306901 GN=DBP3 PE=3 SV=1
Length=566

 Score = 118 bits (295),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 39/198 (20%), Positives = 69/198 (35%), Gaps = 18/198 (9%)

Query  296  TVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLE  355
            +VR +     +                 E                +    P   K + L 
Sbjct  381  SVRGLAEGFMIDPVKATIGNRTRAGEEGEGNGSTELQANIRIEQKVEVVDPRG-KEQRLL  439

Query  356  KILQR-QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH  414
            ++L+  Q  S+ + R ++F   ++ A  +   L+++              G    S    
Sbjct  440  ELLKEAQKGSAKNDRILVFCLYKKEAVRVEQNLERR--------------GIRVCSIHGD  485

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR  473
            + Q  +   ++ F+ GT ++LVAT VA  GLDIP   +V+           V   GR  R
Sbjct  486  LRQDQRTRSLESFKAGTTSVLVATDVAARGLDIPEVKLVINVTFPLTIEDYVHRIGRTGR  545

Query  474  ADQSVYAF-VATEGSREL  490
            A +   A  + TE  +  
Sbjct  546  AGKKGKAITLFTEHDKSH  563


 Score = 59.0 bits (141),  Expect = 9e-08, Method: Composition-based stats.
 Identities = 54/251 (22%), Positives = 84/251 (33%), Gaps = 26/251 (10%)

Query  14   ALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG-----------AKVVVLVNRVHLVTQ  62
            AL G+++I    TG+GKT A A      L +              A+ VV+     L  Q
Sbjct  215  ALSGRDVIGIAETGSGKTMAFAVPCIESLASSPKPNHAKGDRTAYARAVVVSPTRELAMQ  274

Query  63   HGEEFRRM--LDGRWTVTTLSGDMGPRAGFGHLARCH---DLLICTAELLQMALTSPEEE  117
                   +  L G   V    G   P+     L R +   D+++ T   L+  L+    E
Sbjct  275  THAAMSSLASLVGLSVVCLYGGA--PKDDQRALLRKNSGADIIVATPGRLKDFLS----E  328

Query  118  EHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS-PGTGGAS  176
              V L+     V+DE            I    L L   R +   Q L  TA+ P +    
Sbjct  329  GCVSLSDVMFAVLDEADRMLDKGFEEDIK---LILGSCRPREKRQTLMFTATWPTSVRGL  385

Query  177  KLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKL  236
                 I+ V     N          N   +LQ + +   K   +  R  +    +LLK+ 
Sbjct  386  AEGFMIDPVKATIGNRTRAGEEGEGNGSTELQANIRIEQKVEVVDPRGKEQRLLELLKEA  445

Query  237  MDQIHDHLEMP  247
                  +  + 
Sbjct  446  QKGSAKNDRIL  456


>sp|Q4L7W0|CSHA_STAHJ DEAD-box ATP-dependent RNA helicase CshA 
OS=Staphylococcus haemolyticus (strain JCSC1435) OX=279808 
GN=cshA PE=3 SV=1
Length=503

 Score = 117 bits (293),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 58/327 (18%), Positives = 103/327 (31%), Gaps = 50/327 (15%)

Query  245  EMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYA----LHLRRYNDALLIHDTVRAV  300
            +  ++   FG    ++Q+  L     +      RV        L+      LI D    +
Sbjct  96   QNVQVVTVFGGMPIDRQIKALKRGPQIVVGTPGRVIDHLNRRTLKTNGIHTLILDEADEM  155

Query  301  DALAALQDFYHREHVTKTQILCAERRLLALFD----DRKNELAHLATHGPENPK------  350
              +  + D            + AE+R   LF          L       P+  K      
Sbjct  156  MNMGFIDDMRFIMD-----KIPAEQRQTMLFSATMPKAIQTLVQQFMKSPQIVKTMNNEM  210

Query  351  -----------LEMLEKI--LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD  397
                       ++ LEK                I+F RT++    L   L  +       
Sbjct  211  SDPQIDEYYTIVKELEKFDTFTNFLDVHQPELAIVFGRTKRRVDELTSALLSK-------  263

Query  398  IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG  457
                   G         +TQ  + EV++KF++  +++LVAT VA  GLDI   + V  + 
Sbjct  264  -------GYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDISGVSHVYNFD  316

Query  458  LLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQA  516
            +  +  S     GR  RA +   A              I ++    M       +K    
Sbjct  317  IPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDSNGRRMNALRPPHRK---E  373

Query  517  EYQAKIRDLQQAALTKRAAQAAQRENQ  543
              +A+  D++       + ++  R  +
Sbjct  374  VLKAREDDIKDKVKNWMSRESEARLKR  400


 Score = 51.3 bits (121),  Expect = 2e-05, Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 49/128 (38%), Gaps = 5/128 (4%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEE  66
            Q + I   LEGK+I+    TG GKT A        +    G + ++L     L  Q  E+
Sbjct  29   QKDSIPYTLEGKDILGQAQTGTGKTGAFGIPLIEKVVGQSGVQALILAPTRELAMQVAEQ  88

Query  67   FRRMLDGR-WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF  125
             R    G+   V T+ G M        L R   +++ T   +   L        ++    
Sbjct  89   LREFSRGQNVQVVTVFGGMPIDRQIKALKRGPQIVVGTPGRVIDHLNRRT----LKTNGI  144

Query  126  SLIVVDEC  133
              +++DE 
Sbjct  145  HTLILDEA  152


>sp|Q54TJ4|DDX27_DICDI Probable ATP-dependent RNA helicase ddx27 
OS=Dictyostelium discoideum OX=44689 GN=ddx27 PE=3 SV=1
Length=783

 Score = 119 bits (297),  Expect = 2e-26, Method: Composition-based stats.
 Identities = 72/417 (17%), Positives = 148/417 (35%), Gaps = 51/417 (12%)

Query  169  SPGTGGASKLDGAINHVLQLCA--NLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQ  226
            +P    A  L      +L   +  +  T   + P       ++   +  +   L   R  
Sbjct  214  TPIQAKAIPLALNGKDILASASTGSGKTAAFLLPVLERLLFRDSEYRAIRVLILLPTREL  273

Query  227  DPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR  286
                  + + + Q  +      +    G    + Q V+L ++  +      R+   HL  
Sbjct  274  ALQCQSVMENLAQFSNITSCLIV----GGLSNKAQEVELRKSPDVVIATPGRLID-HLLN  328

Query  287  YNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFD----DRKNELAHLA  342
             +   L    +  +D    L D   ++ + K    C   R   LF     D    LA L+
Sbjct  329  AHGIGLDDLEILILDEADRLLDMGFKDEINKIVESCPTNRQTMLFSATLNDEVKTLAKLS  388

Query  343  THGPENPKLEMLEKI---LQRQF--------------------SSSNSPRGIIFTRTRQS  379
               P   +++ L ++   L+++F                       N    IIF R+++ 
Sbjct  389  LQQPIRVQVDALMQVTSTLEQEFVKIKPQHLSDRPAILLSLCTRVFNQGGTIIFCRSKKE  448

Query  380  AHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATS  439
             H L +           D++A  L G        +++Q  + + +Q+F+DG +N L+A+ 
Sbjct  449  VHRLRII------FGLSDLKAAELHG--------NLSQEQRFDSLQQFRDGQVNYLLASD  494

Query  440  VAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARAD-QSVYAFVATEGSRELKRELINE  497
            VA  GLDI     V+ Y +  N  + +   GR ARA          T+  R+L ++++ +
Sbjct  495  VASRGLDIIGVKTVINYNMPNNMANYIHRVGRTARAGMDGKSCSFITDNDRKLLKDIVTK  554

Query  498  ALETLMEQAVAAVQ-KMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQ  553
            A      ++V+       +   +    D++     +      ++  +      + + 
Sbjct  555  ARNKAKSRSVSQDNVNFWRNRIEELTEDIKSIVREEMKEADLRKAEKTLDKAEKIIS  611


 Score = 58.3 bits (139),  Expect = 2e-07, Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 51/134 (38%), Gaps = 8/134 (6%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA----KVVVLVNRVHLVTQ  62
            Q + I  AL GK+I+    TG+GKT A        L   D      +V++L+    L  Q
Sbjct  217  QAKAIPLALNGKDILASASTGSGKTAAFLLPVLERLLFRDSEYRAIRVLILLPTRELALQ  276

Query  63   HGEEFRRMLDGRW-TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVE  121
                   +      T   + G +  +A    L +  D++I T   L   L +        
Sbjct  277  CQSVMENLAQFSNITSCLIVGGLSNKAQEVELRKSPDVVIATPGRLIDHLLNAHGIG---  333

Query  122  LTVFSLIVVDECHH  135
            L    ++++DE   
Sbjct  334  LDDLEILILDEADR  347


>sp|Q9HXE5|RHLB_PSEAE ATP-dependent RNA helicase RhlB OS=Pseudomonas 
aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 
/ JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=rhlB 
PE=3 SV=1
Length=397

 Score = 115 bits (288),  Expect = 2e-26, Method: Composition-based stats.
 Identities = 65/378 (17%), Positives = 127/378 (34%), Gaps = 65/378 (17%)

Query  162  QVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLC  221
            QVLG T      G   +  A     +  A L +           QL + +  P ++Y   
Sbjct  38   QVLGFT----LRGQDAIGRAQTGTGKTAAFLISIIT--------QLLQ-TPPPKERYMGE  84

Query  222  HR-RSQDPFGDLLKKLMDQIHDHLEMPELS--RKFGTQMYEQQVVKLSEA-AALAGLQEQ  277
             R     P  +L+ ++        +   L+     G   +++Q+ +L      +      
Sbjct  85   PRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPG  144

Query  278  RVYALHLRRYN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLL--AL  330
            R+   + R        + +++ +  R +D +  +     R+ + +T      + LL  A 
Sbjct  145  RLLDFNQRGEVHLDMVEVMVLDEADRMLD-MGFIPQ--VRQIIRQTPHKGERQTLLFSAT  201

Query  331  FDDRKNELAHLATHGPENPKLE-------------------MLEKILQRQFSSSNSPRGI  371
            F D    LA   T  P   ++E                      K+L    + +N  R +
Sbjct  202  FTDDVMNLAKQWTVDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLVAQNNWERVM  261

Query  372  IFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGT  431
            +F   +     +   L +               G   +  S  + Q  +   ++ F++G 
Sbjct  262  VFANRKDEVRRIEERLTKD--------------GISAAQMSGDVPQHKRIRTLEGFREGK  307

Query  432  LNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSREL  490
            + +LVAT VA  G+ I   + V+ + L  +    V   GR  RA  S  +          
Sbjct  308  IRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGTSISFAGEDDAF  367

Query  491  KRELINEALETLMEQAVA  508
                    +E L+ + + 
Sbjct  368  A----LPPIEELLGRKIT  381


 Score = 52.9 bits (125),  Expect = 5e-06, Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 52/141 (37%), Gaps = 18/141 (13%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAY--VAKRHLETVDGA-------KVVVLVNRV  57
            Q +V+   L G++ I    TG GKT AA    +  + L+T           + +++    
Sbjct  36   QAQVLGFTLRGQDAIGRAQTGTGKT-AAFLISIITQLLQTPPPKERYMGEPRALIIAPTR  94

Query  58   HLVTQ---HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP  114
             LV Q         +       +T + G    +      AR  D+L+ T   L       
Sbjct  95   ELVVQIAKDAAALTKYTGLNV-MTFVGGMDFDKQLKQLEARFCDILVATPGRLLD----F  149

Query  115  EEEEHVELTVFSLIVVDECHH  135
             +   V L +  ++V+DE   
Sbjct  150  NQRGEVHLDMVEVMVLDEADR  170


>sp|Q02S21|RHLB_PSEAB ATP-dependent RNA helicase RhlB OS=Pseudomonas 
aeruginosa (strain UCBPP-PA14) OX=208963 GN=rhlB PE=3 
SV=1
Length=397

 Score = 115 bits (288),  Expect = 2e-26, Method: Composition-based stats.
 Identities = 65/378 (17%), Positives = 127/378 (34%), Gaps = 65/378 (17%)

Query  162  QVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLC  221
            QVLG T      G   +  A     +  A L +           QL + +  P ++Y   
Sbjct  38   QVLGFT----LRGQDAIGRAQTGTGKTAAFLISIIT--------QLLQ-TPPPKERYMGE  84

Query  222  HR-RSQDPFGDLLKKLMDQIHDHLEMPELS--RKFGTQMYEQQVVKLSEA-AALAGLQEQ  277
             R     P  +L+ ++        +   L+     G   +++Q+ +L      +      
Sbjct  85   PRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPG  144

Query  278  RVYALHLRRYN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLL--AL  330
            R+   + R        + +++ +  R +D +  +     R+ + +T      + LL  A 
Sbjct  145  RLLDFNQRGEVHLDMVEVMVLDEADRMLD-MGFIPQ--VRQIIRQTPHKGERQTLLFSAT  201

Query  331  FDDRKNELAHLATHGPENPKLE-------------------MLEKILQRQFSSSNSPRGI  371
            F D    LA   T  P   ++E                      K+L    + +N  R +
Sbjct  202  FTDDVMNLAKQWTVDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLVAQNNWERVM  261

Query  372  IFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGT  431
            +F   +     +   L +               G   +  S  + Q  +   ++ F++G 
Sbjct  262  VFANRKDEVRRIEERLTKD--------------GISAAQMSGDVPQHKRIRTLEGFREGK  307

Query  432  LNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSREL  490
            + +LVAT VA  G+ I   + V+ + L  +    V   GR  RA  S  +          
Sbjct  308  IRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGTSISFAGEDDAF  367

Query  491  KRELINEALETLMEQAVA  508
                    +E L+ + + 
Sbjct  368  A----LPPIEELLGRKIT  381


 Score = 52.9 bits (125),  Expect = 5e-06, Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 52/141 (37%), Gaps = 18/141 (13%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAY--VAKRHLETVDGA-------KVVVLVNRV  57
            Q +V+   L G++ I    TG GKT AA    +  + L+T           + +++    
Sbjct  36   QAQVLGFTLRGQDAIGRAQTGTGKT-AAFLISIITQLLQTPPPKERYMGEPRALIIAPTR  94

Query  58   HLVTQ---HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP  114
             LV Q         +       +T + G    +      AR  D+L+ T   L       
Sbjct  95   ELVVQIAKDAAALTKYTGLNV-MTFVGGMDFDKQLKQLEARFCDILVATPGRLLD----F  149

Query  115  EEEEHVELTVFSLIVVDECHH  135
             +   V L +  ++V+DE   
Sbjct  150  NQRGEVHLDMVEVMVLDEADR  170


>sp|B7UUT0|RHLB_PSEA8 ATP-dependent RNA helicase RhlB OS=Pseudomonas 
aeruginosa (strain LESB58) OX=557722 GN=rhlB PE=3 SV=1
Length=397

 Score = 115 bits (288),  Expect = 2e-26, Method: Composition-based stats.
 Identities = 65/378 (17%), Positives = 127/378 (34%), Gaps = 65/378 (17%)

Query  162  QVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLC  221
            QVLG T      G   +  A     +  A L +           QL + +  P ++Y   
Sbjct  38   QVLGFT----LRGQDAIGRAQTGTGKTAAFLISIIT--------QLLQ-TPPPKERYMGE  84

Query  222  HR-RSQDPFGDLLKKLMDQIHDHLEMPELS--RKFGTQMYEQQVVKLSEA-AALAGLQEQ  277
             R     P  +L+ ++        +   L+     G   +++Q+ +L      +      
Sbjct  85   PRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPG  144

Query  278  RVYALHLRRYN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLL--AL  330
            R+   + R        + +++ +  R +D +  +     R+ + +T      + LL  A 
Sbjct  145  RLLDFNQRGEVHLDMVEVMVLDEADRMLD-MGFIPQ--VRQIIRQTPHKGERQTLLFSAT  201

Query  331  FDDRKNELAHLATHGPENPKLE-------------------MLEKILQRQFSSSNSPRGI  371
            F D    LA   T  P   ++E                      K+L    + +N  R +
Sbjct  202  FTDDVMNLAKQWTVDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLVAQNNWERVM  261

Query  372  IFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGT  431
            +F   +     +   L +               G   +  S  + Q  +   ++ F++G 
Sbjct  262  VFANRKDEVRRIEERLTKD--------------GISAAQMSGDVPQHKRIRTLEGFREGK  307

Query  432  LNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSREL  490
            + +LVAT VA  G+ I   + V+ + L  +    V   GR  RA  S  +          
Sbjct  308  IRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGTSISFAGEDDAF  367

Query  491  KRELINEALETLMEQAVA  508
                    +E L+ + + 
Sbjct  368  A----LPPIEELLGRKIT  381


 Score = 52.9 bits (125),  Expect = 5e-06, Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 52/141 (37%), Gaps = 18/141 (13%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAY--VAKRHLETVDGA-------KVVVLVNRV  57
            Q +V+   L G++ I    TG GKT AA    +  + L+T           + +++    
Sbjct  36   QAQVLGFTLRGQDAIGRAQTGTGKT-AAFLISIITQLLQTPPPKERYMGEPRALIIAPTR  94

Query  58   HLVTQ---HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP  114
             LV Q         +       +T + G    +      AR  D+L+ T   L       
Sbjct  95   ELVVQIAKDAAALTKYTGLNV-MTFVGGMDFDKQLKQLEARFCDILVATPGRLLD----F  149

Query  115  EEEEHVELTVFSLIVVDECHH  135
             +   V L +  ++V+DE   
Sbjct  150  NQRGEVHLDMVEVMVLDEADR  170


>sp|Q9DF36|DD21B_XENLA Nucleolar RNA helicase 2-B OS=Xenopus laevis 
OX=8355 GN=ddx21-b PE=2 SV=2
Length=800

 Score = 118 bits (296),  Expect = 2e-26, Method: Composition-based stats.
 Identities = 56/318 (18%), Positives = 104/318 (33%), Gaps = 54/318 (17%)

Query  204  CPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVV  263
              +     QQP  +          P  +L  ++ +++    +  +++  +G   Y+QQV 
Sbjct  279  LVERLSEDQQPLARGRAPRVIILTPTRELAIQITNELRSMTKKLKVACFYGGTPYQQQVF  338

Query  264  KLSEAAALAGLQEQRVYALHLRRYND-----ALLIHDTVRAVDALAALQDFYHREHVTKT  318
             + +          R+  L      D      +++ +     D      +        + 
Sbjct  339  AIKDGIDFLVGTPGRIRDLVQNYRLDLTALKHVVLDEVDMMFDV--GFSEQVEEILSVRY  396

Query  319  QILCAERRLLALF------------------------------DDRKNELAHLATHGPEN  348
            +    E     LF                                    + HLA     +
Sbjct  397  KPDPEENPQTLLFSATCPDWMYNVAKKYMRKQYEKVDLVGHRSQKAAITVEHLAIECNRS  456

Query  349  PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN  408
             K  +L  I+Q    S +  + IIF  ++  AH L                   L     
Sbjct  457  QKAAVLGDIVQVY--SGSHGKTIIFCDSKLQAHELST-------------NCGSL-KQSA  500

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
                  + Q++++ V++ F+ GT  +L+AT+VA  GLDIP  ++VV Y       + V  
Sbjct  501  KPLHGDLQQKEREVVLKGFRQGTFEVLIATNVAARGLDIPEVDLVVLYSAPKEADAYVHR  560

Query  469  RGR-ARADQSVYAFVATE  485
             GR  RA ++       E
Sbjct  561  SGRTGRAGRTGVCISLYE  578


 Score = 43.6 bits (101),  Expect = 0.006, Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 50/133 (38%), Gaps = 12/133 (9%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDG------AKVVVLVNRVHL  59
            Q +       GK++++   TG GKT +    + +R  E           +V++L     L
Sbjct  248  QSKTFHTVYSGKDVVVQARTGTGKTFSFGIPLVERLSEDQQPLARGRAPRVIILTPTREL  307

Query  60   VTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
              Q   E R M   +  V    G    +     +    D L+ T   ++  + +      
Sbjct  308  AIQITNELRSMTK-KLKVACFYGGTPYQQQVFAIKDGIDFLVGTPGRIRDLVQNYR----  362

Query  120  VELTVFSLIVVDE  132
            ++LT    +V+DE
Sbjct  363  LDLTALKHVVLDE  375


>sp|Q1DMX8|PRP28_COCIM Pre-mRNA-splicing ATP-dependent RNA helicase 
PRP28 OS=Coccidioides immitis (strain RS) OX=246410 GN=PRP28 
PE=3 SV=2
Length=820

 Score = 118 bits (296),  Expect = 2e-26, Method: Composition-based stats.
 Identities = 42/239 (18%), Positives = 93/239 (39%), Gaps = 32/239 (13%)

Query  294  HDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNEL-------------AH  340
             +  RA+      +D Y +  +    +  A  R+   +  R   +               
Sbjct  572  AEDARAMSQHLGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGNIGEAVDTVEQR  631

Query  341  LATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRA  400
            +     E+ + + L  IL    S    P  I+F   +++  ++   ++Q           
Sbjct  632  VEFISGEDKRKKRLADILA---SGEFRPPIIVFVNIKRNCDAVARDIKQ-----------  677

Query  401  QLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT  460
               +G  + +     TQ  ++  +   ++G  ++LVAT +A  G+D+P  ++VV + + T
Sbjct  678  ---MGYSSVTLHGSKTQEQREAALASVRNGNTDVLVATDLAGRGIDVPDVSLVVNFNMAT  734

Query  461  NEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQAE  517
            N  S     GR  RA +S  A         ++  +L    +++ + +    ++K + A+
Sbjct  735  NIESYTHRIGRTGRAGKSGVAITFLGNEDADVMYDLKQMLMKSSISRVPEELRKHEAAQ  793


 Score = 61.4 bits (147),  Expect = 2e-08, Method: Composition-based stats.
 Identities = 29/141 (21%), Positives = 50/141 (35%), Gaps = 16/141 (11%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT---------RAAAYVAKRHLETV--DGAKVVVLVN  55
            Q   I  AL+ +++I    TG+GKT           A        E    DG   ++L  
Sbjct  407  QRAAIPIALQNRDLIGVAVTGSGKTAAFLLPLLVYIAELPRLDEFEWRKSDGPYAIILAP  466

Query  56   RVHLVTQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP  114
               L  Q   E R+  +   + V ++ G          L    +++I T   L   +   
Sbjct  467  TRELAQQIENEARKFCNPLGFNVVSIVGGHSLEEQSFSLRNGAEIIIATPGRLVDCI---  523

Query  115  EEEEHVELTVFSLIVVDECHH  135
             E   + L+    +++DE   
Sbjct  524  -ERRILVLSQCCYVIMDEADR  543


>sp|Q9Y6V7|DDX49_HUMAN Probable ATP-dependent RNA helicase DDX49 
OS=Homo sapiens OX=9606 GN=DDX49 PE=1 SV=1
Length=483

 Score = 116 bits (291),  Expect = 2e-26, Method: Composition-based stats.
 Identities = 46/209 (22%), Positives = 80/209 (38%), Gaps = 16/209 (8%)

Query  346  PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
            PE  K   L  ++QR          IIFT T ++   L + L++                
Sbjct  227  PEKVKDAYLVHLIQRFQDEHEDWSIIIFTNTCKTCQILCMMLRKFSFPTV----------  276

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM  465
                +  + M Q+++   + KF+     +L+AT VA  GLDIP   VV+ +         
Sbjct  277  ----ALHSMMKQKERFAALAKFKSSIYRILIATDVASRGLDIPTVQVVINHNTPGLPKIY  332

Query  466  VQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIR  523
            +   GR ARA +   A  + T+    L   +  +  + L E +V   + +        +R
Sbjct  333  IHRVGRTARAGRQGQAITLVTQYDIHLVHAIEEQIKKKLEEFSVEEAEVLQILTQVNVVR  392

Query  524  DLQQAALTKRAAQAAQRENQRQQFPVEHV  552
               +  L        +  N+R+Q  +E  
Sbjct  393  RECEIKLEAAHFDEKKEINKRKQLILEGK  421


 Score = 56.3 bits (134),  Expect = 5e-07, Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 47/131 (36%), Gaps = 5/131 (4%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE  65
            Q   I   LEG++ +    TG+GKT A      + L         +VL     L  Q  E
Sbjct  29   QLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSEDPYGIFCLVLTPTRELAYQIAE  88

Query  66   EFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
            +FR +          + G M   A    L+R   ++I T   L   L S        +  
Sbjct  89   QFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIATPGRLADHLRSSNT---FSIKK  145

Query  125  FSLIVVDECHH  135
               +V+DE   
Sbjct  146  IRFLVMDEADR  156


>sp|P21693|DBPA_ECOLI ATP-dependent RNA helicase DbpA OS=Escherichia 
coli (strain K12) OX=83333 GN=dbpA PE=1 SV=2
Length=457

 Score = 116 bits (290),  Expect = 2e-26, Method: Composition-based stats.
 Identities = 56/303 (18%), Positives = 106/303 (35%), Gaps = 47/303 (16%)

Query  225  SQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHL  284
                  D +   + ++   L   ++    G Q +  Q   L  A  +      R+   HL
Sbjct  79   PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLD-HL  137

Query  285  RRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNE-LAHLAT  343
            ++   +L   +T+   D    + D    + +          R   LF     E +A ++ 
Sbjct  138  QKGTVSLDALNTLVM-DEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISG  196

Query  344  HGPENP-------------------------KLEMLEKILQRQFSSSNSPRGIIFTRTRQ  378
                +P                         K+ +L+++L            ++F  T++
Sbjct  197  RVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLH----QPSSCVVFCNTKK  252

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT  438
               ++   L +              +G    S    + QRD+ + + +F +G+  +LVAT
Sbjct  253  DCQAVCDALNE--------------VGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT  298

Query  439  SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE  497
             VA  GLDI    +VV + L  +    V   GR ARA  S  A          +  +I++
Sbjct  299  DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD  358

Query  498  ALE  500
             L+
Sbjct  359  MLQ  361


 Score = 54.0 bits (128),  Expect = 3e-06, Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 53/134 (40%), Gaps = 11/134 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAY---VAKRHLETVDGAKVVVLVNRVHLVTQH  63
            Q   +   L GK++ +   TG+GKT  AA+   + ++   ++   + +VL     L  Q 
Sbjct  30   QAAALPAILAGKDVRVQAKTGSGKT--AAFGLGLLQQIDASLFQTQALVLCPTRELADQV  87

Query  64   GEEFRRMLD--GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVE  121
              E RR+        + TL G          L     +++ T   L   L    ++  V 
Sbjct  88   AGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHL----QKGTVS  143

Query  122  LTVFSLIVVDECHH  135
            L   + +V+DE   
Sbjct  144  LDALNTLVMDEADR  157


>sp|Q81DF9|CSHE_BACCR DEAD-box ATP-dependent RNA helicase CshE 
OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 
/ JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711) 
OX=226900 GN=cshE PE=2 SV=1
Length=458

 Score = 116 bits (290),  Expect = 2e-26, Method: Composition-based stats.
 Identities = 49/361 (14%), Positives = 120/361 (33%), Gaps = 20/361 (6%)

Query  182  INHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIH  241
            +  +   C+++    +   +    Q+    ++   Q    +  +    G  + + + ++ 
Sbjct  64   LEKIDPECSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAI-YGGQDVAQQLRKLK  122

Query  242  DHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVD  301
             +  +   +         ++ + LS  + +   +  ++         + +L         
Sbjct  123  GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT  182

Query  302  ALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQ  361
             L +       + + K  +   +   +   +   + +        +  K + L  ++ R 
Sbjct  183  MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDR-  241

Query  362  FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ  421
                     +IF RT+  A  L   L+               +G   +     + Q  ++
Sbjct  242  ---DQPFLAVIFCRTKVRASKLYDNLKG--------------LGYNCAELHGDIPQAKRE  284

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYA  480
             V++ F++  +  L+AT VA  GLD+     V  Y +  +  S +   GR  RA  S  A
Sbjct  285  RVMKSFREAKIQYLIATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLA  344

Query  481  FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR  540
                    E   E I + L   +++ +    K+ + +   K         + +  Q   R
Sbjct  345  ITFVAAKDEKHLEEIEKTLGAPIQREIIEQPKIKRVDENGKPVPKPAPKKSGQNRQRDSR  404

Query  541  E  541
            E
Sbjct  405  E  405


 Score = 56.3 bits (134),  Expect = 6e-07, Method: Composition-based stats.
 Identities = 31/130 (24%), Positives = 50/130 (38%), Gaps = 7/130 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLE-TVDGAKVVVLVNRVHLVTQHGE  65
            Q + I   L GK+II    TG GKT A        ++      + +++     L  Q   
Sbjct  32   QEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPECSDVQALIVAPTRELALQITT  91

Query  66   EFRRMLDGR--WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELT  123
            E ++ML  R    V  + G          L     +++ T   L   +      E ++L+
Sbjct  92   EIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNTHIVVATPGRLLDHI----RRETIDLS  147

Query  124  VFSLIVVDEC  133
              S IV+DE 
Sbjct  148  NLSTIVLDEA  157


>sp|Q9VIF6|DDX47_DROME ATP-dependent RNA helicase DDX47 OS=Drosophila 
melanogaster OX=7227 GN=pths PE=1 SV=1
Length=507

 Score = 116 bits (291),  Expect = 3e-26, Method: Composition-based stats.
 Identities = 47/215 (22%), Positives = 83/215 (39%), Gaps = 26/215 (12%)

Query  335  KNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQ  394
              +L       P   K   L  IL     +S     +IF  T  +     L L+      
Sbjct  272  VEQLQQSYLFIPVKYKDVYLVHILNELAGNSF----MIFCSTCNNTVKTALMLRA-----  322

Query  395  TVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV  454
                     +G         M+Q  +   + KF+    ++L++T VA  GLDIPH +VVV
Sbjct  323  ---------LGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVV  373

Query  455  RYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQK  512
             + + T+    +   GR ARA +S  A  + ++   EL      + +E L+ + +  + K
Sbjct  374  NFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIEL-----YQRIEHLLGKQL-TLYK  427

Query  513  MDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQF  547
             ++ E  A    + +A  T +       + +    
Sbjct  428  CEEDEVMALQERVAEAQRTAKLELKDLEDTRGGHK  462


 Score = 63.3 bits (152),  Expect = 4e-09, Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 53/131 (40%), Gaps = 5/131 (4%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT-RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q E I  AL+GK++I    TG+GKT   A  +    LE       +VL     L  Q GE
Sbjct  88   QREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENPQRYFALVLTPTRELAFQIGE  147

Query  66   EFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
            +F  +  G       + G M   A    LA+   ++I T   L   L + +      L  
Sbjct  148  QFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLVDHLENMKG---FNLKA  204

Query  125  FSLIVVDECHH  135
               +V+DE   
Sbjct  205  IKYLVMDEADR  215


>sp|Q6BLU9|PRP28_DEBHA Pre-mRNA-splicing ATP-dependent RNA helicase 
PRP28 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 
767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 
GN=PRP28 PE=3 SV=2
Length=580

 Score = 117 bits (292),  Expect = 3e-26, Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 66/170 (39%), Gaps = 17/170 (10%)

Query  327  LLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLW  386
            +   F+      +      P   KL+ L  IL+     + +   IIF   +++   L   
Sbjct  398  INQQFEYFGARQSSDEILDP--KKLDKLFSILRFHKDENRNYSIIIFANFKKACEELAYE  455

Query  387  LQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLD  446
            L ++               + N+      +Q  ++  I  F++G   +L+AT VA  G+D
Sbjct  456  LSRKGF-------------SDNTVIHGSKSQEARERAIDSFREGKDKILIATDVAARGID  502

Query  447  IPHCNVVVRYGLLTNEISMVQARGR-ARADQSVY-AFVATEGSRELKREL  494
            IP+ ++VV Y +       +   GR  RA           +G  E+  +L
Sbjct  503  IPNVSLVVNYQMTKKFDEYIHRIGRTGRAGNKGTSCTFIDDGDSEVFLDL  552


 Score = 45.6 bits (106),  Expect = 0.001, Method: Composition-based stats.
 Identities = 60/359 (17%), Positives = 112/359 (31%), Gaps = 48/359 (13%)

Query  14   ALEGKNIIIWLPTGAGKTRAAAY--------------VAKRHLE--TVDGAKVVVLVNRV  57
            AL G++I+    TG+GKT  A                +   H +    +    ++L    
Sbjct  189  ALNGRDIVGIAETGSGKTL-AFLLPLFSYILSVDSNYLLYEHQQESNFNKPLGLILAPTR  247

Query  58   HLVTQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE  116
             L  Q  +E +   D     V T+ G          +     +++ T   L  +L    E
Sbjct  248  ELALQITKEAKLFGDKLNLNVVTIIGGHQYEETVHSVRNGVHIVVATPGRLIDSL----E  303

Query  117  EEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGAS  176
               + L+      +DE           +I   + +        LP      AS      +
Sbjct  304  RGIINLSNCYFFTMDEADK--------MIDMGFEKSLQSILNYLP------AS--EKLET  347

Query  177  KLDGAINHVLQLCANLDTWCIMSP--QNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDL-L  233
             +DG I ++ +    + T  I  P  +     L +                   F     
Sbjct  348  TIDGKIFNIKKRITLMFTATISPPIEKITKNYLMKPGYLFIGNVGEAVDNINQQFEYFGA  407

Query  234  KKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLI  293
            ++  D+I D  ++ +L         E +   +   A      E+  Y L  + ++D  +I
Sbjct  408  RQSSDEILDPKKLDKLFSILRFHKDENRNYSIIIFANFKKACEELAYELSRKGFSDNTVI  467

Query  294  HDT------VRAVDALAALQD-FYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG  345
            H +       RA+D+    +D       V    I      L+  +   K    ++   G
Sbjct  468  HGSKSQEARERAIDSFREGKDKILIATDVAARGIDIPNVSLVVNYQMTKKFDEYIHRIG  526


>sp|O02494|IF4A_CRYPV Eukaryotic initiation factor 4A OS=Cryptosporidium 
parvum OX=5807 GN=EIF4-A PE=2 SV=1
Length=405

 Score = 114 bits (286),  Expect = 4e-26, Method: Composition-based stats.
 Identities = 47/337 (14%), Positives = 119/337 (35%), Gaps = 23/337 (7%)

Query  172  TGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFG-  230
            +G        I  + ++  +L+   ++         Q+  +      + C  R     G 
Sbjct  77   SGTGKTATFVIAALQKIDYSLNACQVLLLAPTRELAQQIQKVALALGDYCELRCHACVGG  136

Query  231  DLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDA  290
              ++  M+++   + M   +      M ++  +++         +   + +   +     
Sbjct  137  TSVRDDMNKLKSGVHMVVGTPGRVFDMLDKGYLRVDNLKLFILDEADEMLSRGFKVQIHD  196

Query  291  LLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPK  350
            +          AL +        H+T   +   +R L+   +     +      G E  K
Sbjct  197  IFKKLPQDVQVALFSATMPNEILHLTTQFMRDPKRILVKQEELTLEGIRQFYV-GVE--K  253

Query  351  LEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSS  410
             E     L   + +    + II+  TR+    L   ++++      D     + G     
Sbjct  254  DEWKMDTLIDLYETLTIVQAIIYCNTRRRVDQLTKQMRER------DFTCSSMHG-----  302

Query  411  QSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARG  470
                M Q+D++ ++++F+ G+  +L+ T +   G+D+   ++V+ Y L  +  + +   G
Sbjct  303  ---DMDQKDREVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPVSPETYIHRIG  359

Query  471  R-ARADQSVYAF-VATEGSRELKRELI---NEALETL  502
            R  R  +   +    T+      R++    N  +E +
Sbjct  360  RSGRFGKKGVSINFVTDDDIVCLRDIERHYNTQIEEM  396


 Score = 56.0 bits (133),  Expect = 7e-07, Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 49/131 (37%), Gaps = 10/131 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT---RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQH  63
            Q   I P L+G + I    +G GKT     AA   ++   +++  +V++L     L  Q 
Sbjct  58   QQRGIKPILDGYDTIGQAQSGTGKTATFVIAAL--QKIDYSLNACQVLLLAPTRELAQQI  115

Query  64   GEEFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
             +    + D          G    R     L     +++ T   +   L    ++ ++ +
Sbjct  116  QKVALALGDYCELRCHACVGGTSVRDDMNKLKSGVHMVVGTPGRVFDML----DKGYLRV  171

Query  123  TVFSLIVVDEC  133
                L ++DE 
Sbjct  172  DNLKLFILDEA  182


>sp|Q4PEX7|DBP8_USTMA ATP-dependent RNA helicase DBP8 OS=Ustilago 
maydis (strain 521 / FGSC 9021) OX=237631 GN=DBP8 PE=3 SV=2
Length=531

 Score = 116 bits (290),  Expect = 4e-26, Method: Composition-based stats.
 Identities = 44/203 (22%), Positives = 81/203 (40%), Gaps = 16/203 (8%)

Query  368  PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF  427
            P  IIFT   ++A +L   L +              +G  N S  +H+ Q ++ E +Q F
Sbjct  341  PATIIFTARCKTAATLSGMLAE--------------LGIPNVSLHSHLRQSERSENLQTF  386

Query  428  QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATE  485
            +   + +L+AT V   GLDIP   +V+ + L +     V   GR AR  +  +A    TE
Sbjct  387  RAQRVPVLIATDVGSRGLDIPDVELVINWDLPSAWQDYVHRVGRTARNGKRGFAISFITE  446

Query  486  GSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQ  545
               ++   + ++    L +      +     +  A     + A +    +Q  +R+ + Q
Sbjct  447  RDIDVIHSIEDKINTKLTQLEGLEDEDKILEKLNAVATAKRVATMALHDSQFGERQQRNQ  506

Query  546  QFPVEHVQLLCINCMVAVGHGSD  568
               +  ++        A   G D
Sbjct  507  HKQLARLKAEKRASKKAKSAGHD  529


 Score = 53.6 bits (127),  Expect = 5e-06, Method: Composition-based stats.
 Identities = 57/239 (24%), Positives = 92/239 (38%), Gaps = 20/239 (8%)

Query  26   TGAGKTRAAAYVAKRHL-ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRW---TVTTLS  81
            TG+GKT   A      L + + G   VVL     L  Q  E+F  + +G         + 
Sbjct  84   TGSGKTLCFALPILNKLIKDMVGGFAVVLTPTRELGVQLHEQFVAVGEGARMGLRCALVL  143

Query  82   G--DMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHTHKD  139
            G  DM  +A      R H +++ T   L   L S   EE   L     +V+DE      D
Sbjct  144  GGMDMMKQASELANLRPH-VIVATPGRLVDHLRSGGGEEW-GLRRCKFLVLDEADRLLTD  201

Query  140  TVYNVIMSQYLELKLQRAQPLPQVLGLTAS-----PGTGGASKLDGAIN-HVLQLCANLD  193
            T    +  +YL   L  A+ L Q L  TA+          A + +G     V ++   +D
Sbjct  202  TFKPEL--EYLYSVLPSAKTL-QTLLFTATLTEQVVEFANAKRPEGKPAPMVCKIE--MD  256

Query  194  TWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRK  252
            T    + +     +  H ++P   + L H     P  + ++KL  +     E  E +++
Sbjct  257  TKTPETLEQRYVFVPSHVREPYLYHILRHP-PIKPSSERVRKLNAKHQADRERKEENQR  314


>sp|A5DKW3|DRS1_PICGU ATP-dependent RNA helicase DRS1 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DRS1 PE=3 
SV=2
Length=705

 Score = 117 bits (293),  Expect = 5e-26, Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 90/233 (39%), Gaps = 19/233 (8%)

Query  339  AHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI  398
              +     E+ K  +L  +L R        R ++F   ++ AH L + L           
Sbjct  420  EFVRIRKREHLKPALLYHLL-RLVDPQQQNRIVVFVSRKEMAHRLRIVLG----------  468

Query  399  RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL  458
                L+G   S     +TQ  + + ++ F+   + +L+ T +A  GLDIP   +V+ + +
Sbjct  469  ----LLGMKVSELHGSLTQEQRLQSVKDFRSLAVPVLICTDLAARGLDIPKIEIVINFDM  524

Query  459  LTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAE  517
                   +   GR ARA +   +     G     R ++ +A+++L EQ     + + +  
Sbjct  525  PKTHEIYLHRVGRTARAGREGRSITFV-GESNQDRSIVKDAIKSLEEQK--NGKAVSRTV  581

Query  518  YQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQLLCINCMVAVGHGSDLR  570
               K+ +L     +K+       E ++    +   ++        + H  ++ 
Sbjct  582  DWKKVEELNSIVESKKDTIDEVLEEEKSAKEILQAEMQLEKASNIMKHEKEIH  634


 Score = 53.3 bits (126),  Expect = 7e-06, Method: Composition-based stats.
 Identities = 28/135 (21%), Positives = 49/135 (36%), Gaps = 9/135 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA----KVVVLVNRVHLVTQ  62
            Q   I  A+ GK+I+    TG+GKT A        L     A    +V+VL     L  Q
Sbjct  225  QAASIPIAMMGKDIVAGAVTGSGKTAAYLIPIIERLIYKPAAVSATRVIVLTPTRELAIQ  284

Query  63   HGEEFRRMLDGRWTV--TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
              +  +++      +      G +  R     L    D+++ T   L   + +       
Sbjct  285  VCDVGKKLGQFVANLNFGLAVGGLNLRQQEQQLKSRPDIVVATPGRLIDHIRNSPS---F  341

Query  121  ELTVFSLIVVDECHH  135
             +    ++V+DE   
Sbjct  342  SIENLEVLVMDEADR  356


>sp|Q5HME0|CSHA_STAEQ DEAD-box ATP-dependent RNA helicase CshA 
OS=Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 
/ BCRC 17069 / CCUG 31568 / BM 3577 / RP62A) OX=176279 GN=cshA 
PE=3 SV=1
Length=509

 Score = 116 bits (289),  Expect = 5e-26, Method: Composition-based stats.
 Identities = 64/352 (18%), Positives = 110/352 (31%), Gaps = 47/352 (13%)

Query  248  ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYA----LHLRRYNDALLIHDTVRAVDAL  303
            ++   FG    E+Q+  L     +      RV        L+      LI D    +  +
Sbjct  99   QVVTVFGGMPIERQIKALKRGPQIVVGTPGRVIDHLNRRTLKTQGIHTLILDEADEMMNM  158

Query  304  AALQDFYHREHVTKTQILCAERRLLALFD----DRKNELAHLATHGPENPK---------  350
              + D            + AE+R   LF         EL       P+  K         
Sbjct  159  GFIDDMRFIMD-----KIPAEQRQTMLFSATMPKAIQELVQQFMKAPKIIKTMNNEMSDP  213

Query  351  --------LEMLEKI--LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRA  400
                    ++ LEK                I+F RT++    L   L  +          
Sbjct  214  QIDEYYTIVKELEKFDTFTNFLDVHQPELAIVFGRTKRRVDELTSALLSK----------  263

Query  401  QLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT  460
                G         +TQ  + EV++KF++  +++LVAT VA  GLDI   + V  + +  
Sbjct  264  ----GYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDISGVSHVYNFDIPQ  319

Query  461  NEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQ  519
            +  S     GR  RA +   A              I +     M+      +K      +
Sbjct  320  DTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDVNNRRMKALRPPHRKEVLKARE  379

Query  520  AKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQLLCINCMVAVGHGSDLRK  571
              I+D  Q  +++      QR +       +  +L+       V    ++  
Sbjct  380  DDIKDRVQNWMSRENEPRLQRISSELLKEYDSTELVASLLQELVEANDEVEV  431


 Score = 52.9 bits (125),  Expect = 8e-06, Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 49/128 (38%), Gaps = 5/128 (4%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEE  66
            Q + I  ALEG +I+    TG GKT A        +    G + ++L     L  Q  E+
Sbjct  29   QKDSIPYALEGDDILGQAQTGTGKTGAFGIPLIEKVVGQQGVQSLILAPTRELAMQVAEQ  88

Query  67   FRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF  125
             R    G +  V T+ G M        L R   +++ T   +   L        ++    
Sbjct  89   LREFSKGQKVQVVTVFGGMPIERQIKALKRGPQIVVGTPGRVIDHLNRRT----LKTQGI  144

Query  126  SLIVVDEC  133
              +++DE 
Sbjct  145  HTLILDEA  152


>sp|Q5RC67|DDX23_PONAB Probable ATP-dependent RNA helicase DDX23 
OS=Pongo abelii OX=9601 GN=DDX23 PE=2 SV=1
Length=820

 Score = 117 bits (294),  Expect = 5e-26, Method: Composition-based stats.
 Identities = 40/175 (23%), Positives = 70/175 (40%), Gaps = 20/175 (11%)

Query  347  ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA  406
            E+ K + L  IL++ F     P  IIF   ++    L   L++              +G 
Sbjct  648  ESEKRKKLLAILEQGF----DPPIIIFVNQKKGCDVLAKSLEK--------------MGY  689

Query  407  GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV  466
               +      Q  ++  +   + G  ++LVAT VA  G+DI   ++VV Y +  N    +
Sbjct  690  NACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYI  749

Query  467  QARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQ  519
               GR  RA +S  A    T+    +  EL    LE+ +      +     A+++
Sbjct  750  HRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAILESPVSSCPPELANHPDAQHK  804


 Score = 51.0 bits (120),  Expect = 3e-05, Method: Composition-based stats.
 Identities = 29/140 (21%), Positives = 49/140 (35%), Gaps = 15/140 (11%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT---RAAAYV-------AKRHLETVDGAKVVVLVNR  56
            Q + I   L+ ++II    TG+GKT        V         R  E+  G   ++L   
Sbjct  418  QRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAIILAPT  477

Query  57   VHLVTQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE  115
              L  Q  EE  +           + G +        L    +++I T   L   L    
Sbjct  478  RELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVL----  533

Query  116  EEEHVELTVFSLIVVDECHH  135
            E  ++  +  + +V+DE   
Sbjct  534  ENRYLVPSRCTYVVLDEADR  553


>sp|Q9BUQ8|DDX23_HUMAN Probable ATP-dependent RNA helicase DDX23 
OS=Homo sapiens OX=9606 GN=DDX23 PE=1 SV=3
Length=820

 Score = 117 bits (293),  Expect = 5e-26, Method: Composition-based stats.
 Identities = 40/175 (23%), Positives = 70/175 (40%), Gaps = 20/175 (11%)

Query  347  ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA  406
            E+ K + L  IL++ F     P  IIF   ++    L   L++              +G 
Sbjct  648  ESEKRKKLLAILEQGF----DPPIIIFVNQKKGCDVLAKSLEK--------------MGY  689

Query  407  GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV  466
               +      Q  ++  +   + G  ++LVAT VA  G+DI   ++VV Y +  N    +
Sbjct  690  NACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYI  749

Query  467  QARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQ  519
               GR  RA +S  A    T+    +  EL    LE+ +      +     A+++
Sbjct  750  HRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAILESPVSSCPPELANHPDAQHK  804


 Score = 52.1 bits (123),  Expect = 2e-05, Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 50/140 (36%), Gaps = 15/140 (11%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT---RAAAYV-------AKRHLETVDGAKVVVLVNR  56
            Q + I   L+ ++II    TG+GKT        V         R  E+  G   ++L   
Sbjct  418  QRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAIILAPT  477

Query  57   VHLVTQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE  115
              L  Q  EE  +           + G +        L    +++I T   L   L    
Sbjct  478  RELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVL----  533

Query  116  EEEHVELTVFSLIVVDECHH  135
            E  ++ L+  + +V+DE   
Sbjct  534  ENRYLVLSRCTYVVLDEADR  553


>sp|Q96GQ7|DDX27_HUMAN Probable ATP-dependent RNA helicase DDX27 
OS=Homo sapiens OX=9606 GN=DDX27 PE=1 SV=2
Length=796

 Score = 117 bits (293),  Expect = 5e-26, Method: Composition-based stats.
 Identities = 57/303 (19%), Positives = 120/303 (40%), Gaps = 52/303 (17%)

Query  289  DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFD----DRKNELAHLATH  344
            + L++ +  R +D        Y  E + +   +C+  R   LF     D   +LA ++  
Sbjct  366  EVLILDEADRMLDE-------YFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLK  418

Query  345  GPENPKLE-------MLEKILQRQFSSSNSPR---------------GIIFTRTRQSAHS  382
             P    +         L +   R   +    R                ++FT+T++ AH 
Sbjct  419  NPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHR  478

Query  383  LLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAE  442
            + + L               L+G        +++Q  + E +++F+D  +++LVAT VA 
Sbjct  479  MHILLG--------------LMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAA  524

Query  443  EGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALE  500
             GLDI     V+ + +       V   GR ARA ++  +  +  E  R++ +E++  A  
Sbjct  525  RGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEIVKAAKA  584

Query  501  TLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQLLCINCM  560
             +  + +     +   +++ KI  +++        +A ++E Q+ +  +   + L     
Sbjct  585  PVKARILPQDVIL---KFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGK  641

Query  561  VAV  563
             AV
Sbjct  642  EAV  644


 Score = 57.9 bits (138),  Expect = 3e-07, Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 48/127 (38%), Gaps = 8/127 (6%)

Query  14   ALEGKNIIIWLPTGAGKTRAAAYVAKRHL----ETVDGAKVVVLVNRVHLVTQHGEEFRR  69
             L GK+I     TG GKT A A      L          +V+VLV    L  Q     R+
Sbjct  252  GLLGKDICACAATGTGKTAAFALPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQ  311

Query  70   MLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLI  128
            +       T L+ G +  ++    L    D+LI T   L   L +        L+   ++
Sbjct  312  LAQFCNITTCLAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPS---FHLSSIEVL  368

Query  129  VVDECHH  135
            ++DE   
Sbjct  369  ILDEADR  375


>sp|P93008|RH21_ARATH DEAD-box ATP-dependent RNA helicase 21 OS=Arabidopsis 
thaliana OX=3702 GN=RH21 PE=2 SV=1
Length=733

 Score = 117 bits (293),  Expect = 5e-26, Method: Composition-based stats.
 Identities = 50/326 (15%), Positives = 108/326 (33%), Gaps = 64/326 (20%)

Query  222  HRRSQDPFGDLLKKLMDQIHDHLEMP--ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRV  279
            +     P  +L +++ ++           ++   G Q  E+Q +K+++   +      R+
Sbjct  391  YAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEEQGLKITQGCEIVIATPGRL  450

Query  280  YALHLRRYN-----DALLIHDTVRAVD-------------------------ALAALQDF  309
                 RRY      + +++ +  R +D                              +  
Sbjct  451  IDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVAGVLDAMPSSNLKPENEEEELDEKKI  510

Query  310  YHREHVTKTQILCAERRLLALFDDRK------------NELAHLATHGPENPKLEMLEKI  357
            Y   ++    +     RL   +                + ++       E+ K   L+K+
Sbjct  511  YRTTYMFSATMPPGVERLARKYLRNPVVVTIGTAGKTTDLISQHVIMMKESEKFFRLQKL  570

Query  358  LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ  417
            L            I+F  T+++  S+   L +               G   ++     +Q
Sbjct  571  LDEL----GEKTAIVFVNTKKNCDSIAKNLDKA--------------GYRVTTLHGGKSQ  612

Query  418  RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQ  476
              ++  ++ F+    N+LVAT V   G+DIP    V+ Y +  +        GR  RA +
Sbjct  613  EQREISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAGK  672

Query  477  SVYAF-VATEGSRELKRELINEALET  501
            S  A    T    E+  +L    +++
Sbjct  673  SGVATSFLTLHDTEVFYDLKQMLVQS  698


 Score = 57.9 bits (138),  Expect = 3e-07, Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 50/139 (36%), Gaps = 14/139 (10%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA---------KVVVLVNRV  57
            Q   I   L+ +++I    TG+GKT A       ++  +              VV+    
Sbjct  340  QMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTR  399

Query  58   HLVTQHGEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE  116
             L  Q  EE  +      + VT++ G          + +  +++I T   L   L    E
Sbjct  400  ELAQQIEEETVKFAHYLGFRVTSIVGGQSIEEQGLKITQGCEIVIATPGRLIDCL----E  455

Query  117  EEHVELTVFSLIVVDECHH  135
              +  L   + +V+DE   
Sbjct  456  RRYAVLNQCNYVVLDEADR  474


>sp|P0CQ88|PRP28_CRYNJ Pre-mRNA-splicing ATP-dependent RNA helicase 
PRP28 OS=Cryptococcus neoformans var. neoformans serotype 
D (strain JEC21 / ATCC MYA-565) OX=214684 GN=PRP28 PE=3 
SV=1
Length=738

 Score = 117 bits (292),  Expect = 7e-26, Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 82/187 (44%), Gaps = 21/187 (11%)

Query  343  THGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL  402
             HG E  K   L +IL+        P  I+F   +++A  ++ ++QQ             
Sbjct  564  VHGDEKKK-ARLIEILRTI---GLPPPIIVFVNQKKTADMVVKYVQQA------------  607

Query  403  LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE  462
              G    +  +  +Q  ++  +Q  +DG +++LVAT +A  G+D+P  ++V+ + +    
Sbjct  608  --GMSGVTLHSGKSQEQREAALQALRDGEISVLVATDLAGRGIDVPDVSLVINWQMSDTI  665

Query  463  ISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA  520
               V   GR  RA ++  A    T    E+  +L  E  ++ M +    + +  +A    
Sbjct  666  EKYVHRIGRTGRAGKTGVAITFLTNDDDEVMYDLRIEVEKSKMSKMNPELAR-HEAARTR  724

Query  521  KIRDLQQ  527
              R++++
Sbjct  725  VTREMKR  731


 Score = 49.8 bits (117),  Expect = 7e-05, Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 52/139 (37%), Gaps = 14/139 (10%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVD---------GAKVVVLVNRV  57
            Q + I   ++ +++I    TG+GKT A       ++  +          G   +++    
Sbjct  342  QRQAIPIGMQNRDLIGVAKTGSGKTAAFVIPMLDYIGHLPPLNDDNRHLGPYALIMAPTR  401

Query  58   HLVTQHGEEFRRM-LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE  116
             L  Q   E RR  L   +   ++ G          L    +++I T   L+  +    +
Sbjct  402  ELAQQIETETRRFALPLGYKCVSIVGGRSVEEQQFALRDGAEIIIATPGRLKDMV----D  457

Query  117  EEHVELTVFSLIVVDECHH  135
            +  + ++    +V+DE   
Sbjct  458  KSILVMSQCRYVVMDEADR  476


>sp|P0CQ89|PRP28_CRYNB Pre-mRNA-splicing ATP-dependent RNA helicase 
PRP28 OS=Cryptococcus neoformans var. neoformans serotype 
D (strain B-3501A) OX=283643 GN=PRP28 PE=3 SV=1
Length=738

 Score = 117 bits (292),  Expect = 7e-26, Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 82/187 (44%), Gaps = 21/187 (11%)

Query  343  THGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL  402
             HG E  K   L +IL+        P  I+F   +++A  ++ ++QQ             
Sbjct  564  VHGDEKKK-ARLIEILRTI---GLPPPIIVFVNQKKTADMVVKYVQQA------------  607

Query  403  LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE  462
              G    +  +  +Q  ++  +Q  +DG +++LVAT +A  G+D+P  ++V+ + +    
Sbjct  608  --GMSGVTLHSGKSQEQREAALQALRDGEISVLVATDLAGRGIDVPDVSLVINWQMSDTI  665

Query  463  ISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA  520
               V   GR  RA ++  A    T    E+  +L  E  ++ M +    + +  +A    
Sbjct  666  EKYVHRIGRTGRAGKTGVAITFLTNDDDEVMYDLRIEVEKSKMSKMNPELAR-HEAARTR  724

Query  521  KIRDLQQ  527
              R++++
Sbjct  725  VTREMKR  731


 Score = 49.8 bits (117),  Expect = 7e-05, Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 52/139 (37%), Gaps = 14/139 (10%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVD---------GAKVVVLVNRV  57
            Q + I   ++ +++I    TG+GKT A       ++  +          G   +++    
Sbjct  342  QRQAIPIGMQNRDLIGVAKTGSGKTAAFVIPMLDYIGHLPPLNDDNRHLGPYALIMAPTR  401

Query  58   HLVTQHGEEFRRM-LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE  116
             L  Q   E RR  L   +   ++ G          L    +++I T   L+  +    +
Sbjct  402  ELAQQIETETRRFALPLGYKCVSIVGGRSVEEQQFALRDGAEIIIATPGRLKDMV----D  457

Query  117  EEHVELTVFSLIVVDECHH  135
            +  + ++    +V+DE   
Sbjct  458  KSILVMSQCRYVVMDEADR  476


>sp|P27639|IF4A_CAEEL Eukaryotic initiation factor 4A OS=Caenorhabditis 
elegans OX=6239 GN=inf-1 PE=2 SV=1
Length=402

 Score = 114 bits (284),  Expect = 7e-26, Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 66/166 (40%), Gaps = 15/166 (9%)

Query  349  PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN  408
             K E     L   ++  N  + +IF  TR+   +L   + + Q                 
Sbjct  250  QKDEWKFDCLCDLYNVVNVTQAVIFCNTRRKVDTLTEKMTENQ--------------FTV  295

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
            S     M Q ++  ++++F+ G+  +L+ T +   G+D+   ++V+ Y L +N  + +  
Sbjct  296  SCLHGDMDQAERDTIMREFRSGSSRVLITTDILARGIDVQQVSLVINYDLPSNRENYIHR  355

Query  469  RGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM  513
             GR  R  +   A      +   + + I     T +E+   ++  +
Sbjct  356  IGRSGRFGRKGVAINFVTENDARQLKEIESYYTTQIEEMPESIADL  401


 Score = 51.0 bits (120),  Expect = 2e-05, Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 46/130 (35%), Gaps = 8/130 (6%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q   I+P   GK++I    +G GKT   +  + +R        + +V+     L  Q  +
Sbjct  56   QKRAIVPCTTGKDVIAQAQSGTGKTATFSVSILQRIDHEDPHVQALVMAPTREL-AQQIQ  114

Query  66   EFRRMLDGRWTVTTLS--GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELT  123
            +    L     V  L   G    R     L     +++ T   +   +        ++ +
Sbjct  115  KVMSALGEYLNVNILPCIGGTSVRDDQRKLEAGIHVVVGTPGRVGDMINRNA----LDTS  170

Query  124  VFSLIVVDEC  133
               + V+DE 
Sbjct  171  RIKMFVLDEA  180


>sp|Q4WEB4|FAL1_ASPFU ATP-dependent RNA helicase fal1 OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 
/ Af293) OX=330879 GN=fal1 PE=3 SV=2
Length=398

 Score = 114 bits (284),  Expect = 7e-26, Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 59/147 (40%), Gaps = 16/147 (11%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K E     L   + +    + +IF  TR+    L   +++                   S
Sbjct  246  KEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREAN--------------FTVS  291

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
            S    M Q+++  ++Q F+ G   +L++T V   G+D+   ++V+ Y L TN  + +   
Sbjct  292  SMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHRI  351

Query  470  GR-ARADQSVYAF-VATEGSRELKREL  494
            GR  R  +   A    T     + R++
Sbjct  352  GRSGRFGRKGVAINFVTSDDVRILRDI  378


 Score = 44.4 bits (103),  Expect = 0.003, Method: Composition-based stats.
 Identities = 20/120 (17%), Positives = 38/120 (32%), Gaps = 6/120 (5%)

Query  16   EGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGR  74
            +G++ I    +G GKT   +  + +     V   + +VL     L TQ       + D  
Sbjct  60   KGRDTIAQAQSGTGKTATFSIGILQVIDTVVRETQALVLSPTRELATQIQSVIMALGDYM  119

Query  75   WTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC  133
                    G          L     ++  T   +   +       H+      ++V+DE 
Sbjct  120  NVQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRVADMI----RRRHLRTRHIKMLVLDEA  175


>sp|Q54KG1|DDX41_DICDI Probable ATP-dependent RNA helicase ddx41 
OS=Dictyostelium discoideum OX=44689 GN=ddx41 PE=1 SV=1
Length=671

 Score = 116 bits (291),  Expect = 8e-26, Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 85/232 (37%), Gaps = 23/232 (10%)

Query  296  TVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLE  355
              R     +A      +E      +L  E  +        N    +    PE  K+  L 
Sbjct  409  NQRQTLLFSATMPKKIQEFARSALVLPVEVNVGRAGAANLNVTQEVEFVKPEA-KIVYLL  467

Query  356  KILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHM  415
            + LQ+       P  +IF   ++    +  +L              LL      S     
Sbjct  468  ECLQK-----TPPPVLIFCENKKDVDDIYEYL--------------LLKQVEAVSIHGDK  508

Query  416  TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA  474
            +Q +++  I+ F++G  ++LVAT VA +GLD P    V+ + +     + +   GR  R 
Sbjct  509  SQDERESAIKAFREGKKDVLVATDVASKGLDFPEIQHVINFDMPREIENYIHRIGRTGRR  568

Query  475  DQSVYA--FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD  524
                 A  F+    +  L  +L    +E   +   A ++  D  +Y  K++D
Sbjct  569  GNKGVATTFINKNNTESLLLDLKYLLIEAKQKVPPALLEIPDDNQYLQKLQD  620


 Score = 39.4 bits (90),  Expect = 0.14, Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 44/147 (30%), Gaps = 23/147 (16%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKV----------VVLVNR  56
            Q + +   L G+++I    TG+GKT     +        +  K+          ++L   
Sbjct  249  QVQGLPVILSGRDMIGIAYTGSGKTLV-FTLPMVLFALEEECKLPIIQGEGPFGLILCPS  307

Query  57   VHLVTQHG-------EEFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQ  108
              L  Q             +        T L+ G +  R       +   ++I T   L 
Sbjct  308  RELARQTYDLVNSFTNALHKNGGHPQLRTLLAIGGIDLREQEHIFKKGVHMIIATPGRLL  367

Query  109  MALTSPEEEEHVELTVFSLIVVDECHH  135
              L + ++          L   DE   
Sbjct  368  D-LLNKKKINFKLCKYLGL---DEADR  390


>sp|Q53RK8|RH21_ORYSJ DEAD-box ATP-dependent RNA helicase 21 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os03g0708600 PE=2 
SV=1
Length=736

 Score = 116 bits (291),  Expect = 9e-26, Method: Composition-based stats.
 Identities = 54/298 (18%), Positives = 100/298 (34%), Gaps = 62/298 (21%)

Query  248  ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN-----DALLIHDTVRAVD-  301
            ++    G Q  E+Q  K+ +   +      R+     RRY      + +++ +  R +D 
Sbjct  421  KVVSIVGGQSIEEQGFKIRQGCEVVIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDM  480

Query  302  -------------ALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGP--  346
                           + L+     E +    I        A        LA      P  
Sbjct  481  GFEPQVVGVLDAMPSSNLKPENEDEELDAKTIYRTTYMFSATMPPAVERLARKYLRNPVV  540

Query  347  ---------------------ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLL  385
                                 E+ K+  L+KIL            I+F  T++SA +   
Sbjct  541  VTIGTAGKATDLITQNVIMTKESEKMSRLQKILTDL----GDKPAIVFCNTKKSADA---  593

Query  386  WLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGL  445
               + + L     R   L G          +Q  ++  +  F++    +LVAT VA  G+
Sbjct  594  ---RAKDLDKAGFRVTTLHG--------GKSQEQRETSLDGFRNRRFTVLVATDVAGRGI  642

Query  446  DIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALET  501
            DIP    V+ Y + ++  +     GR  RA +   A    T  + ++  +L    +++
Sbjct  643  DIPDVAHVINYEMPSSIDTYTHRIGRTGRAGKKGLATSFLTLENTDIFFDLKQMLIQS  700


 Score = 56.3 bits (134),  Expect = 8e-07, Method: Composition-based stats.
 Identities = 32/142 (23%), Positives = 53/142 (37%), Gaps = 20/142 (14%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVD---------GAKVVVLVNRV  57
            Q   I   L+ +++I    TG+GKT A       ++  +          G   VV+    
Sbjct  342  QMASIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPISEENEAEGPYAVVMAPTR  401

Query  58   HLVTQHGEE----FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTS  113
             L  Q  EE    F   L  +  V+ + G      GF  + +  +++I T   L   L  
Sbjct  402  EL-AQQIEEETVKFATYLGIKV-VSIVGGQSIEEQGFK-IRQGCEVVIATPGRLLDCL--  456

Query  114  PEEEEHVELTVFSLIVVDECHH  135
              E  +  L   + +V+DE   
Sbjct  457  --ERRYAVLNQCNYVVLDEADR  476


>sp|A1A4H6|DDX27_BOVIN Probable ATP-dependent RNA helicase DDX27 
OS=Bos taurus OX=9913 GN=DDX27 PE=2 SV=1
Length=765

 Score = 116 bits (291),  Expect = 9e-26, Method: Composition-based stats.
 Identities = 57/307 (19%), Positives = 119/307 (39%), Gaps = 63/307 (21%)

Query  289  DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFD----DRKNELAHLATH  344
            + L++ +  R +D        Y  E + +   +C+  R   LF     D   +LA ++  
Sbjct  335  EVLILDEADRMLDE-------YFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLK  387

Query  345  GPENPKLE-------MLEKILQRQFSSSNSPR---------------GIIFTRTRQSAHS  382
             P    +         L +   R   +    R                ++FT+T++ AH 
Sbjct  388  NPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHR  447

Query  383  LLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAE  442
            + + L               L+G        +++Q  + E +++F+D  +++LVAT VA 
Sbjct  448  MHILLG--------------LMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAA  493

Query  443  EGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALE  500
             GLDI     V+ + +       V   GR ARA ++  +  +  E  R++ +E++  A  
Sbjct  494  RGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKAAKA  553

Query  501  TLMEQAVA---------AVQKMDQAEY-----QAKIRDLQQAALTKRAAQAAQRENQRQQ  546
             +  + +           ++KM++  Y     +A+ +++Q++      AQ    + +   
Sbjct  554  PVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQKSEAQINTAQRLLEKGKEAP  613

Query  547  FPVEHVQ  553
             P     
Sbjct  614  NPEPERS  620


 Score = 57.1 bits (136),  Expect = 4e-07, Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 48/127 (38%), Gaps = 8/127 (6%)

Query  14   ALEGKNIIIWLPTGAGKTRAAAYVAKRHL----ETVDGAKVVVLVNRVHLVTQHGEEFRR  69
             L GK+I     TG GKT A A      L          +V+VLV    L  Q     ++
Sbjct  221  GLLGKDICACAATGTGKTAAFALPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQ  280

Query  70   MLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLI  128
            +       T L+ G +  ++    L    D+LI T   L   L +        L+   ++
Sbjct  281  LAQFCSITTCLAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPS---FHLSSIEVL  337

Query  129  VVDECHH  135
            ++DE   
Sbjct  338  ILDEADR  344


>sp|Q8SR63|RRP3_ENCCU ATP-dependent rRNA helicase RRP3 OS=Encephalitozoon 
cuniculi (strain GB-M1) OX=284813 GN=RRP3 PE=3 SV=1
Length=400

 Score = 113 bits (283),  Expect = 9e-26, Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 76/185 (41%), Gaps = 18/185 (10%)

Query  358  LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ  417
            L      S     I+F     +A  + L L +              +G  + +    ++Q
Sbjct  230  LVELLEMSQGMSVIVFVSMCVTARVMSLALAR--------------LGFCSEALHGELSQ  275

Query  418  RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQ  476
              ++E ++ F++   N+LV T +   GLDI H ++V+ + +  +    +   GR ARA +
Sbjct  276  EKREEAMRSFKESRFNVLVCTDLGSRGLDISHVDLVINFDVPKSGKDYIHRVGRTARAGR  335

Query  477  SVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD-LQQAALTKRAA  535
            S  A          + + I   LE  +E+    + K +     A+I + +Q+A  T +  
Sbjct  336  SGTAITLVTQYDVEQIQKIEFTLEKKLEEF--KMMKKNFGTICARIEEAIQEAQETLKEE  393

Query  536  QAAQR  540
            +   R
Sbjct  394  RKRNR  398


 Score = 53.3 bits (126),  Expect = 5e-06, Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 46/131 (35%), Gaps = 6/131 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE  65
            Q +VI   L G ++I    TG+GKT A       HL   + +   +V+     L +Q  E
Sbjct  28   QRQVIPAVLGGGDVIAVSQTGSGKTLAFVLPIVSHLLQKNRSFYCLVVAPTRELSSQIAE  87

Query  66   EFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTA-ELLQMALTSPEEEEHVELTV  124
             F         V  L G          L++   +++ T   + +  L +           
Sbjct  88   CFNMFQATGLRVCLLVGGANFNVQANQLSKRPHVVVGTPGRIAEHVLKTKS----FRTER  143

Query  125  FSLIVVDECHH  135
                V+DE   
Sbjct  144  VRKFVLDEADR  154


>sp|Q8CRP6|CSHA_STAES DEAD-box ATP-dependent RNA helicase CshA 
OS=Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 
1200) OX=176280 GN=cshA PE=3 SV=1
Length=509

 Score = 115 bits (287),  Expect = 9e-26, Method: Composition-based stats.
 Identities = 64/352 (18%), Positives = 110/352 (31%), Gaps = 47/352 (13%)

Query  248  ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYA----LHLRRYNDALLIHDTVRAVDAL  303
            ++   FG    E+Q+  L     +      RV        L+      LI D    +  +
Sbjct  99   QVVTVFGGMPIERQIKVLKRGPQIVVGTPGRVIDHLNRRTLKTQGIHTLILDEADEMMNM  158

Query  304  AALQDFYHREHVTKTQILCAERRLLALFD----DRKNELAHLATHGPENPK---------  350
              + D            + AE+R   LF         EL       P+  K         
Sbjct  159  GFIDDMRFIMD-----KIPAEQRQTMLFSATMPKAIQELVQQFMKAPKIIKTMNNEMSDP  213

Query  351  --------LEMLEKI--LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRA  400
                    ++ LEK                I+F RT++    L   L  +          
Sbjct  214  QIDEYYTIVKELEKFDTFTNFLDVHQPELAIVFGRTKRRVDELTSALLSK----------  263

Query  401  QLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT  460
                G         +TQ  + EV++KF++  +++LVAT VA  GLDI   + V  + +  
Sbjct  264  ----GYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDISGVSHVYNFDIPQ  319

Query  461  NEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQ  519
            +  S     GR  RA +   A              I +     M+      +K      +
Sbjct  320  DTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDVNNRRMKALRPPHRKEVLKARE  379

Query  520  AKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQLLCINCMVAVGHGSDLRK  571
              I+D  Q  +++      QR +       +  +L+       V    ++  
Sbjct  380  DDIKDRVQNWMSRENEPRLQRISSELLKEYDSTELVASLLQELVEANDEVEV  431


 Score = 51.3 bits (121),  Expect = 2e-05, Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 49/128 (38%), Gaps = 5/128 (4%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEE  66
            Q + I  ALEG +I+    TG GKT A        +    G + ++L     L  Q  E+
Sbjct  29   QKDSIPYALEGDDILGQAQTGTGKTGAFGIPLIEKVVGQQGVQSLILAPTRELAMQVAEQ  88

Query  67   FRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF  125
             R    G +  V T+ G M        L R   +++ T   +   L        ++    
Sbjct  89   LREFSKGQKVQVVTVFGGMPIERQIKVLKRGPQIVVGTPGRVIDHLNRRT----LKTQGI  144

Query  126  SLIVVDEC  133
              +++DE 
Sbjct  145  HTLILDEA  152


>sp|Q2UAK1|FAL1_ASPOR ATP-dependent RNA helicase fal1 OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=fal1 
PE=3 SV=1
Length=398

 Score = 113 bits (282),  Expect = 1e-25, Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 59/147 (40%), Gaps = 16/147 (11%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K E     L   + +    + +IF  TR+    L   +++                   S
Sbjct  246  KEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREAN--------------FTVS  291

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
            S    M Q+++  ++Q F+ G   +L++T V   G+D+   ++V+ Y L TN  + +   
Sbjct  292  SMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHRI  351

Query  470  GR-ARADQSVYAF-VATEGSRELKREL  494
            GR  R  +   A    T     + R++
Sbjct  352  GRSGRFGRKGVAINFVTSDDVRILRDI  378


 Score = 45.6 bits (106),  Expect = 0.001, Method: Composition-based stats.
 Identities = 21/120 (18%), Positives = 41/120 (34%), Gaps = 6/120 (5%)

Query  16   EGKNIIIWLPTGAGKTRAAAYVAKRHLETV-DGAKVVVLVNRVHLVTQHGEEFRRMLDGR  74
            +G++ I    +G GKT   +    + ++TV   ++ +VL     L TQ       + D  
Sbjct  60   KGRDTIAQAQSGTGKTATFSISILQVIDTVVRESQALVLSPTRELATQIQSVIMALGDYM  119

Query  75   WTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC  133
                    G          L     ++  T   +   +       H+      ++V+DE 
Sbjct  120  NVQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRVADMI----RRRHLRTRHIKMLVLDEA  175


>sp|Q5B3H7|DBP8_EMENI ATP-dependent RNA helicase dbp8 OS=Emericella 
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 
194 / M139) OX=227321 GN=dbp8 PE=3 SV=1
Length=525

 Score = 115 bits (287),  Expect = 1e-25, Method: Composition-based stats.
 Identities = 49/201 (24%), Positives = 87/201 (43%), Gaps = 23/201 (11%)

Query  346  PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
            P   +   L  +L  + + + S   I+FT T +SA  L   L+               +G
Sbjct  331  PLTHREAFLHVLLSTESNITKS--AIVFTNTTKSADLLERLLRS--------------LG  374

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM  465
               +S  + + Q ++   + +F+     +LVAT VA  GLDIP  ++VV + +  N    
Sbjct  375  HRVTSLHSLLPQSERNSNLARFRASAARVLVATDVASRGLDIPSVSLVVNFEVPRNPDDY  434

Query  466  VQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQK--MDQAEYQAKI  522
            V   GR ARA ++  A     G R+++  L   A+E  + + +   ++  ++     AK 
Sbjct  435  VHRVGRTARAGRTGEAVTLV-GQRDVQLVL---AIEERIGRKMVEYEEEGVNLEARVAKG  490

Query  523  RDLQQAALTKRAAQAAQRENQ  543
              L++    KR A     E +
Sbjct  491  SLLKEVGAAKREAMVEIDEGR  511


 Score = 58.7 bits (140),  Expect = 1e-07, Method: Composition-based stats.
 Identities = 43/245 (18%), Positives = 85/245 (35%), Gaps = 20/245 (8%)

Query  15   LEGKNIIIWLPTGAGKTRAA--AYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLD  72
            L+G++ I    TG+GKT  A    + ++  E   G   V+L     L  Q  E+ + +  
Sbjct  130  LKGRDCIGGSRTGSGKT-IAFSVPILQKWAEDPFGIFAVILTPTRELALQIFEQIKAISA  188

Query  73   GRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVD  131
             +      ++G    R+    LA    +++ T   L   + +   +    L    ++V+D
Sbjct  189  PQSMKPVLITGGTDMRSQAIELAGRPHVVVATPGRLADHINTSGTDTVAGLKRVRMVVLD  248

Query  132  ECHHTHKDTVYNVIMS-----QYLELKLQRAQPL------PQVLGLTA---SPGTGGASK  177
            E          +++        +L    QR   L      P+V  L +   +PG      
Sbjct  249  EADRLLSPGPGSMLPDVETCLSFLPGPSQRQTLLFTATLTPEVRALKSMPQTPGKPPIFV  308

Query  178  LDGAINHVLQLCANLDTWCIMSPQNCCPQLQEH--SQQPCKQYNLCHRRSQDPFGDLLKK  235
             + +      +   L T  +  P            S +     +     +     DLL++
Sbjct  309  TEISTEAKDTVPPTLRTTYVQVPLTHREAFLHVLLSTESNITKSAIVFTNTTKSADLLER  368

Query  236  LMDQI  240
            L+  +
Sbjct  369  LLRSL  373


>sp|Q9Z6C9|CSHA_LIMRT ATP-dependent RNA helicase CshA OS=Limosilactobacillus 
reuteri OX=1598 GN=cshA PE=3 SV=1
Length=497

 Score = 114 bits (286),  Expect = 1e-25, Method: Composition-based stats.
 Identities = 54/349 (15%), Positives = 120/349 (34%), Gaps = 24/349 (7%)

Query  182  INHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGD-LLKKLMDQI  240
            I +V     N+    I   +    Q QE   +  K     H R Q  +G   +++ +  +
Sbjct  60   IENVDTENPNIQAIIISPTRELAIQTQEELYRLGKDK---HVRVQVVYGGADIRRQIKSL  116

Query  241  HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV  300
              H ++   +         +  VKL     L   +   +  +      ++++        
Sbjct  117  KQHPQILVGTPGRLRDHINRHTVKLDHIKTLVLDEADEMLNMGFLEDIESIIKETPDDRQ  176

Query  301  DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQR  360
              L +       + +    +   E   +   +   + +        +  K +++ +++  
Sbjct  177  TLLFSATMPPEIKRIGVQFMSDPETVRIKAKELTTDLVDQYYVRARDYEKFDIMTRLIDV  236

Query  361  QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ  420
            Q    +    I+F RT++    L   L  +              G   +     +TQ  +
Sbjct  237  Q----DPDLTIVFGRTKRRVDELSKGLIAR--------------GYNAAGIHGDLTQDKR  278

Query  421  QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVY  479
             +++ KF++  L++LVAT VA  GLDI     V  Y + ++  S V   GR  RA     
Sbjct  279  SKIMWKFKNNELDILVATDVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGV  338

Query  480  AF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQ  527
            +    T    +   E+       ++       ++  + +  +   D+ +
Sbjct  339  SLTFVTPNEMDYLHEIEKLTRVRMLPLKPPTAEEAFKGQVASAFNDIDE  387


 Score = 57.1 bits (136),  Expect = 3e-07, Method: Composition-based stats.
 Identities = 29/123 (24%), Positives = 48/123 (39%), Gaps = 10/123 (8%)

Query  15   LEGKNIIIWLPTGAGKTRAAAY---VAKRHLETVDGAKVVVLVNRVHLVTQ-HGEEFRRM  70
            LEGK++I    TG GKT  AA+   + +         + +++     L  Q   E +R  
Sbjct  36   LEGKDVIGQAQTGTGKT--AAFGLPIIENVDTENPNIQAIIISPTRELAIQTQEELYRLG  93

Query  71   LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV  130
             D    V  + G    R     L +   +L+ T   L+  +        V+L     +V+
Sbjct  94   KDKHVRVQVVYGGADIRRQIKSLKQHPQILVGTPGRLRDHINRHT----VKLDHIKTLVL  149

Query  131  DEC  133
            DE 
Sbjct  150  DEA  152


>sp|Q5AUL4|FAL1_EMENI ATP-dependent RNA helicase fal1 OS=Emericella 
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 
194 / M139) OX=227321 GN=fal1 PE=3 SV=1
Length=399

 Score = 113 bits (282),  Expect = 1e-25, Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 59/147 (40%), Gaps = 16/147 (11%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K E     L   + +    + +IF  TR+    L   +++                   S
Sbjct  247  KEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREAN--------------FTVS  292

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
            S    M Q+++  ++Q F+ G   +L++T V   G+D+   ++V+ Y L TN  + +   
Sbjct  293  SMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHRI  352

Query  470  GR-ARADQSVYAF-VATEGSRELKREL  494
            GR  R  +   A    T     + R++
Sbjct  353  GRSGRFGRKGVAINFVTSDDVRILRDI  379


 Score = 43.6 bits (101),  Expect = 0.005, Method: Composition-based stats.
 Identities = 20/120 (17%), Positives = 37/120 (31%), Gaps = 6/120 (5%)

Query  16   EGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGR  74
            +G++ I    +G GKT   +    +     V   + +VL     L TQ       + D  
Sbjct  61   KGRDTIAQAQSGTGKTATFSISALQVIDTVVRETQALVLSPTRELATQIQSVIMALGDYM  120

Query  75   WTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC  133
                    G          L     ++  T   +   +       H+      ++V+DE 
Sbjct  121  NVQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRVADMI----RRRHLRTRHIKMLVLDEA  176


>sp|Q58083|H669_METJA Probable ATP-dependent RNA helicase MJ0669 
OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 
2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ0669 
PE=1 SV=1
Length=367

 Score = 112 bits (280),  Expect = 1e-25, Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 71/167 (43%), Gaps = 24/167 (14%)

Query  346  PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
             EN + E L ++L+          G++F +T++    L   L+               IG
Sbjct  222  NENERFEALCRLLKN-----KEFYGLVFCKTKRDTKELASMLRD--------------IG  262

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM  465
                +    ++Q  +++VI+ F+   + +L+AT V   G+D+   N V+ Y L  N  S 
Sbjct  263  FKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESY  322

Query  466  VQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQ  511
            +   GR  RA +   A      +R   ++L    +E  M+  +  ++
Sbjct  323  MHRIGRTGRAGKKGKAISII--NRREYKKLRY--IERAMKLKIKKLK  365


 Score = 51.0 bits (120),  Expect = 2e-05, Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 83/225 (37%), Gaps = 15/225 (7%)

Query  19   NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRM-LDGRWTV  77
            NI+    TG+GKT + A      +   +G + ++L     L  Q  +E   +  +    +
Sbjct  46   NIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKI  105

Query  78   TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHTH  137
              + G          L +  ++++ T   +   +        + L      ++DE     
Sbjct  106  AKIYGGKAIYPQIKAL-KNANIVVGTPGRILDHIN----RGTLNLKNVKYFILDEA----  156

Query  138  KDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS-P--GTGGASKLDGAINHVL-QLCANLD  193
             D + N+   + +E  L       ++L  +A+ P      A K  G  + +  ++ AN++
Sbjct  157  -DEMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKINANIE  215

Query  194  TWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMD  238
               +   +N   +      +  + Y L   +++    +L   L D
Sbjct  216  QSYVEVNENERFEALCRLLKNKEFYGLVFCKTKRDTKELASMLRD  260


>sp|Q1DTB3|FAL1_COCIM ATP-dependent RNA helicase FAL1 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=FAL1 PE=3 SV=2
Length=399

 Score = 113 bits (282),  Expect = 1e-25, Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 59/147 (40%), Gaps = 16/147 (11%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K E     L   + +    + +IF  TR+    L   +++                   S
Sbjct  247  KEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREAN--------------FTVS  292

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
            S    M Q+++  ++Q F+ G   +L++T V   G+D+   ++V+ Y L +N  + +   
Sbjct  293  SMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRI  352

Query  470  GR-ARADQSVYAF-VATEGSRELKREL  494
            GR  R  +   A    T     + R++
Sbjct  353  GRSGRFGRKGVAINFVTSEDVRILRDI  379


 Score = 45.9 bits (107),  Expect = 8e-04, Method: Composition-based stats.
 Identities = 20/120 (17%), Positives = 38/120 (32%), Gaps = 6/120 (5%)

Query  16   EGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGR  74
            +G++ I    +G GKT   A  + +     +   + +VL     L TQ       + D  
Sbjct  61   KGRDTIAQAQSGTGKTATFAISILQVIDTALRETQALVLSPTRELATQIQNVIMAVGDYM  120

Query  75   WTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC  133
                    G          L     ++  T   +   +       H+      ++V+DE 
Sbjct  121  NVQCHACIGGTNVGDDIRKLDHGQHVVSGTPGRVADMI----RRRHLRTRHIKMLVLDEA  176


>sp|Q0CAS8|FAL1_ASPTN ATP-dependent RNA helicase fal1 OS=Aspergillus 
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=fal1 
PE=3 SV=1
Length=399

 Score = 113 bits (282),  Expect = 1e-25, Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 59/147 (40%), Gaps = 16/147 (11%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K E     L   + +    + +IF  TR+    L   +++                   S
Sbjct  247  KEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREAN--------------FTVS  292

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
            S    M Q+++  ++Q F+ G   +L++T V   G+D+   ++V+ Y L TN  + +   
Sbjct  293  SMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHRI  352

Query  470  GR-ARADQSVYAF-VATEGSRELKREL  494
            GR  R  +   A    T     + R++
Sbjct  353  GRSGRFGRKGVAINFVTSDDVRILRDI  379


 Score = 47.5 bits (111),  Expect = 3e-04, Method: Composition-based stats.
 Identities = 21/120 (18%), Positives = 39/120 (33%), Gaps = 6/120 (5%)

Query  16   EGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGR  74
            +G++ I    +G GKT   A  + +     V  ++ +VL     L TQ       + D  
Sbjct  61   KGRDTIAQAQSGTGKTATFAISILQVIDTVVRESQALVLSPTRELATQIQSVIMALGDYM  120

Query  75   WTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC  133
                    G          L     ++  T   +   +       H+      ++V+DE 
Sbjct  121  NVQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRVADMI----RRRHLRTRHIKMLVLDEA  176


>sp|A5AAE5|FAL1_ASPNC ATP-dependent RNA helicase fal1 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=fal1 PE=3 SV=2
Length=399

 Score = 113 bits (282),  Expect = 1e-25, Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 59/147 (40%), Gaps = 16/147 (11%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K E     L   + +    + +IF  TR+    L   +++                   S
Sbjct  247  KEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREAN--------------FTVS  292

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
            S    M Q+++  ++Q F+ G   +L++T V   G+D+   ++V+ Y L TN  + +   
Sbjct  293  SMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHRI  352

Query  470  GR-ARADQSVYAF-VATEGSRELKREL  494
            GR  R  +   A    T     + R++
Sbjct  353  GRSGRFGRKGVAINFVTSDDVRILRDI  379


 Score = 45.6 bits (106),  Expect = 0.001, Method: Composition-based stats.
 Identities = 21/120 (18%), Positives = 41/120 (34%), Gaps = 6/120 (5%)

Query  16   EGKNIIIWLPTGAGKTRAAAYVAKRHLETV-DGAKVVVLVNRVHLVTQHGEEFRRMLDGR  74
            +G++ I    +G GKT   +    + ++TV   ++ +VL     L TQ       + D  
Sbjct  61   KGRDTIAQAQSGTGKTATFSISILQVIDTVVRESQALVLSPTRELATQIQSVIMALGDYM  120

Query  75   WTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC  133
                    G          L     ++  T   +   +       H+      ++V+DE 
Sbjct  121  NVQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRVADMI----RRRHLRTRHIKMLVLDEA  176


>sp|A1C595|FAL1_ASPCL ATP-dependent RNA helicase fal1 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=fal1 PE=3 SV=1
Length=399

 Score = 113 bits (282),  Expect = 1e-25, Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 59/147 (40%), Gaps = 16/147 (11%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K E     L   + +    + +IF  TR+    L   +++                   S
Sbjct  247  KEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREAN--------------FTVS  292

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
            S    M Q+++  ++Q F+ G   +L++T V   G+D+   ++V+ Y L TN  + +   
Sbjct  293  SMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHRI  352

Query  470  GR-ARADQSVYAF-VATEGSRELKREL  494
            GR  R  +   A    T     + R++
Sbjct  353  GRSGRFGRKGVAINFVTSDDVRILRDI  379


 Score = 44.8 bits (104),  Expect = 0.002, Method: Composition-based stats.
 Identities = 20/120 (17%), Positives = 38/120 (32%), Gaps = 6/120 (5%)

Query  16   EGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGR  74
            +G++ I    +G GKT   +  + +     V   + +VL     L TQ       + D  
Sbjct  61   KGRDTIAQAQSGTGKTATFSISILQVIDTAVRETQALVLSPTRELATQIQSVIMALGDYM  120

Query  75   WTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC  133
                    G          L     ++  T   +   +       H+      ++V+DE 
Sbjct  121  NVQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRVADMI----RRRHLRTRHIKMLVLDEA  176


>sp|A1CKJ0|DBP8_ASPCL ATP-dependent RNA helicase dbp8 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=dbp8 PE=3 SV=1
Length=523

 Score = 114 bits (286),  Expect = 1e-25, Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 75/199 (38%), Gaps = 17/199 (9%)

Query  352  EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ  411
            E    +L     +S  P  IIF    ++A  L   L++                   +S 
Sbjct  334  EAFLHVLLSTEGNSTKP-AIIFCNHTKTADLLERMLRRLS--------------HRVTSL  378

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
             + + Q ++   + +F+     +LVAT VA  GLDIP  ++VV Y +  N    V   GR
Sbjct  379  HSLLPQSERNANLARFRASAARILVATDVASRGLDIPSVSLVVNYDVPRNPDDYVHRVGR  438

Query  472  -ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAA  529
             ARA +S  +  +  +   +L   +       + E +   V    +      ++++ +A 
Sbjct  439  TARAGRSGESVTLVGQRDVQLVLAIEARVGRQMEEWSEEGVSIEGRVVRTGVLKEVGEAK  498

Query  530  LTKRAAQAAQRENQRQQFP  548
                      R+   ++  
Sbjct  499  REASGEIDEGRDVLGRKRN  517


 Score = 56.0 bits (133),  Expect = 8e-07, Method: Composition-based stats.
 Identities = 31/187 (17%), Positives = 63/187 (34%), Gaps = 6/187 (3%)

Query  26   TGAGKTRAAAYV--AKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV-TTLSG  82
            TG+GKT  A  V   ++  E   G   ++L     L  Q  E+ + +   +      ++G
Sbjct  139  TGSGKT-IAFSVPMLQKWAEDPLGIFGLILTPTRELALQIFEQIKAISAPQSMKPVLITG  197

Query  83   DMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHTHKDTVY  142
                R+    LA    +++ T   L   + S  E+    L    ++V+DE          
Sbjct  198  GTDMRSQALALAGRPHVVVATPGRLADHIKSSGEDTVCGLKRVRMVVLDEADRLLSSGPG  257

Query  143  NVI--MSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSP  200
            +++  +   L      ++    +   T +P       +  A N        + +    + 
Sbjct  258  SMLPDVETCLSALPPSSERQTLLFTATVTPEVRALKNMPRAANKPPVFVTEISSESQGTV  317

Query  201  QNCCPQL  207
                 Q 
Sbjct  318  PPTLKQT  324


>sp|Q2GWJ5|FAL1_CHAGB ATP-dependent RNA helicase FAL1 OS=Chaetomium 
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 
6347 / NRRL 1970) OX=306901 GN=FAL1 PE=3 SV=1
Length=394

 Score = 112 bits (281),  Expect = 1e-25, Method: Composition-based stats.
 Identities = 29/147 (20%), Positives = 59/147 (40%), Gaps = 16/147 (11%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K +     L   + +    + +IF  TR+    L   +++                   S
Sbjct  249  KEDWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREAN--------------FTVS  294

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
            S    M Q+++  ++Q F+ G   +L++T V   G+D+   ++V+ Y L +N  + +   
Sbjct  295  SMHGDMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRI  354

Query  470  GR-ARADQSVYAF-VATEGSRELKREL  494
            GR  R  +   A    T     + R++
Sbjct  355  GRSGRFGRKGVAINFVTSEDVRILRDI  381


 Score = 44.4 bits (103),  Expect = 0.003, Method: Composition-based stats.
 Identities = 21/120 (18%), Positives = 40/120 (33%), Gaps = 6/120 (5%)

Query  16   EGKNIIIWLPTGAGKTRAAAYVAKRHLET-VDGAKVVVLVNRVHLVTQHGEEFRRMLDGR  74
            +G++ I    +G GKT   +    + ++T V   + +VL     L TQ       + D  
Sbjct  63   KGRDTIAQAQSGTGKTATFSISMLQVIDTAVRETQALVLSPTRELATQIQSVVMALGDYM  122

Query  75   WTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC  133
                    G          L     ++  T   +   +       H+      ++V+DE 
Sbjct  123  NVQCHACIGGTNVGEDIRKLDYGQHIVSGTPGRVADMI----RRRHLRTRHIKMLVLDEA  178


>sp|Q5U526|I4A3A_XENLA Eukaryotic initiation factor 4A-III-A OS=Xenopus 
laevis OX=8355 GN=eif4a3-a PE=2 SV=1
Length=415

 Score = 113 bits (282),  Expect = 1e-25, Method: Composition-based stats.
 Identities = 29/165 (18%), Positives = 64/165 (39%), Gaps = 19/165 (12%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K + L  +    + +    + +IF  T++    L   +++                   S
Sbjct  268  KFDTLCDL----YDTLTITQAVIFCNTKRKVDWLTEKMREAN--------------FTVS  309

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
            S    M Q++++ ++++F+ G   +L++T V   GLD+P  ++++ Y L  N    +   
Sbjct  310  SMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI  369

Query  470  GR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM  513
            GR  R      A    +         I +   T +++    V  +
Sbjct  370  GRSGRYGGKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADL  414


 Score = 45.6 bits (106),  Expect = 0.001, Method: Composition-based stats.
 Identities = 19/131 (15%), Positives = 39/131 (30%), Gaps = 10/131 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTR---AAAYVAKRHLETVDGAKVVVLVNRVHLVTQH  63
            Q   I   ++G+++I    +G GKT     +          V   + ++L     L  Q 
Sbjct  69   QQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDI--QVRETQALILAPTRELAGQI  126

Query  64   GEEFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
             +    + D          G          L     ++  T   +   +        +  
Sbjct  127  QKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMI----RRRSLRT  182

Query  123  TVFSLIVVDEC  133
                ++V+DE 
Sbjct  183  RAIKMLVLDEA  193


>sp|A1D071|FAL1_NEOFI ATP-dependent RNA helicase fal1 OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / 
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=fal1 
PE=3 SV=1
Length=399

 Score = 112 bits (281),  Expect = 1e-25, Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 59/147 (40%), Gaps = 16/147 (11%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K E     L   + +    + +IF  TR+    L   +++                   S
Sbjct  247  KEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREAN--------------FTVS  292

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
            S    M Q+++  ++Q F+ G   +L++T V   G+D+   ++V+ Y L TN  + +   
Sbjct  293  SMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHRI  352

Query  470  GR-ARADQSVYAF-VATEGSRELKREL  494
            GR  R  +   A    T     + R++
Sbjct  353  GRSGRFGRKGVAINFVTSDDVRILRDI  379


 Score = 44.8 bits (104),  Expect = 0.002, Method: Composition-based stats.
 Identities = 21/120 (18%), Positives = 40/120 (33%), Gaps = 6/120 (5%)

Query  16   EGKNIIIWLPTGAGKTRAAAYVAKRHLET-VDGAKVVVLVNRVHLVTQHGEEFRRMLDGR  74
            +G++ I    +G GKT   +    + ++T V   + +VL     L TQ       + D  
Sbjct  61   KGRDTIAQAQSGTGKTATFSISILQVIDTVVRETQALVLSPTRELATQIQSVIMALGDYM  120

Query  75   WTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC  133
                    G          L     ++  T   +   +       H+      ++V+DE 
Sbjct  121  NVQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRVADMI----RRRHLRTRHIKMLVLDEA  176


>sp|Q91VC3|IF4A3_MOUSE Eukaryotic initiation factor 4A-III OS=Mus 
musculus OX=10090 GN=Eif4a3 PE=1 SV=3
Length=411

 Score = 112 bits (281),  Expect = 2e-25, Method: Composition-based stats.
 Identities = 29/165 (18%), Positives = 65/165 (39%), Gaps = 19/165 (12%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K + L  +    + +    + +IF  T++    L   +++                   S
Sbjct  264  KFDTLCDL----YDTLTITQAVIFCNTKRKVDWLTEKMREAN--------------FTVS  305

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
            S    M Q++++ ++++F+ G   +L++T V   GLD+P  ++++ Y L  N    +   
Sbjct  306  SMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI  365

Query  470  GR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM  513
            GR  R  +   A    +         I +   T +++    V  +
Sbjct  366  GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADL  410


 Score = 44.0 bits (102),  Expect = 0.004, Method: Composition-based stats.
 Identities = 20/129 (16%), Positives = 41/129 (32%), Gaps = 6/129 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q   I   ++G+++I    +G GKT   +  V +     V   + ++L     L  Q  +
Sbjct  65   QQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQCLDIQVRETQALILAPTRELAVQIQK  124

Query  66   EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
                + D          G          L     ++  T   +   +        +    
Sbjct  125  GLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMI----RRRSLRTRA  180

Query  125  FSLIVVDEC  133
              ++V+DE 
Sbjct  181  IKMLVLDEA  189


>sp|A6QSQ0|FAL1_AJECN ATP-dependent RNA helicase FAL1 OS=Ajellomyces 
capsulatus (strain NAm1 / WU24) OX=2059318 GN=FAL1 PE=3 
SV=1
Length=450

 Score = 113 bits (283),  Expect = 2e-25, Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 59/147 (40%), Gaps = 16/147 (11%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K E     L   + +    + +IF  TR+    L   +++                   S
Sbjct  247  KEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREAN--------------FTVS  292

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
            S    M Q+++  ++Q F+ G   +L++T V   G+D+   ++V+ Y L +N  + +   
Sbjct  293  SMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRI  352

Query  470  GR-ARADQSVYAF-VATEGSRELKREL  494
            GR  R  +   A    T     + R++
Sbjct  353  GRSGRFGRKGVAINFVTSEDVRILRDI  379


 Score = 44.8 bits (104),  Expect = 0.002, Method: Composition-based stats.
 Identities = 21/120 (18%), Positives = 40/120 (33%), Gaps = 6/120 (5%)

Query  16   EGKNIIIWLPTGAGKTRAAAYVAKRHLETV-DGAKVVVLVNRVHLVTQHGEEFRRMLDGR  74
            +G++ I    +G GKT   +    + ++TV    + +VL     L TQ       + D  
Sbjct  61   KGRDTIAQAQSGTGKTATFSISILQVIDTVLRETQALVLSPTRELATQIQSVVMALGDYM  120

Query  75   WTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC  133
                    G          L     ++  T   +   +       H+      ++V+DE 
Sbjct  121  NVQCHACIGGTNVGEDIRKLDHGQHVVSGTPGRVADMI----RRRHLRTRHIKMLVLDEA  176


>sp|Q3B8Q2|IF4A3_RAT Eukaryotic initiation factor 4A-III OS=Rattus 
norvegicus OX=10116 GN=Eif4a3 PE=1 SV=1
Length=411

 Score = 112 bits (281),  Expect = 2e-25, Method: Composition-based stats.
 Identities = 29/165 (18%), Positives = 65/165 (39%), Gaps = 19/165 (12%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K + L  +    + +    + +IF  T++    L   +++                   S
Sbjct  264  KFDTLCDL----YDTLTITQAVIFCNTKRKVDWLTEKMREAN--------------FTVS  305

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
            S    M Q++++ ++++F+ G   +L++T V   GLD+P  ++++ Y L  N    +   
Sbjct  306  SMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI  365

Query  470  GR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM  513
            GR  R  +   A    +         I +   T +++    V  +
Sbjct  366  GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADL  410


 Score = 44.0 bits (102),  Expect = 0.003, Method: Composition-based stats.
 Identities = 19/131 (15%), Positives = 39/131 (30%), Gaps = 10/131 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTR---AAAYVAKRHLETVDGAKVVVLVNRVHLVTQH  63
            Q   I   ++G+++I    +G GKT     +          V   + ++L     L  Q 
Sbjct  65   QQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI--QVRETQALILAPTRELAVQI  122

Query  64   GEEFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
             +    + D          G          L     ++  T   +   +        +  
Sbjct  123  QKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMI----RRRSLRT  178

Query  123  TVFSLIVVDEC  133
                ++V+DE 
Sbjct  179  RAIKMLVLDEA  189


>sp|A6M931|IF4A3_PIG Eukaryotic initiation factor 4A-III OS=Sus 
scrofa OX=9823 GN=EIF4A3 PE=2 SV=1
Length=411

 Score = 112 bits (281),  Expect = 2e-25, Method: Composition-based stats.
 Identities = 29/165 (18%), Positives = 65/165 (39%), Gaps = 19/165 (12%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K + L  +    + +    + +IF  T++    L   +++                   S
Sbjct  264  KFDTLCDL----YDTLTITQAVIFCNTKRKVDWLTEKMREAN--------------FTVS  305

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
            S    M Q++++ ++++F+ G   +L++T V   GLD+P  ++++ Y L  N    +   
Sbjct  306  SMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI  365

Query  470  GR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM  513
            GR  R  +   A    +         I +   T +++    V  +
Sbjct  366  GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADL  410


 Score = 44.0 bits (102),  Expect = 0.003, Method: Composition-based stats.
 Identities = 19/131 (15%), Positives = 39/131 (30%), Gaps = 10/131 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTR---AAAYVAKRHLETVDGAKVVVLVNRVHLVTQH  63
            Q   I   ++G+++I    +G GKT     +          V   + ++L     L  Q 
Sbjct  65   QQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI--QVRETQALILAPTRELAVQI  122

Query  64   GEEFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
             +    + D          G          L     ++  T   +   +        +  
Sbjct  123  QKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMI----RRRSLRT  178

Query  123  TVFSLIVVDEC  133
                ++V+DE 
Sbjct  179  RAIKMLVLDEA  189


>sp|Q2NL22|IF4A3_BOVIN Eukaryotic initiation factor 4A-III OS=Bos 
taurus OX=9913 GN=EIF4A3 PE=2 SV=3
Length=411

 Score = 112 bits (281),  Expect = 2e-25, Method: Composition-based stats.
 Identities = 29/165 (18%), Positives = 65/165 (39%), Gaps = 19/165 (12%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K + L  +    + +    + +IF  T++    L   +++                   S
Sbjct  264  KFDTLCDL----YDTLTITQAVIFCNTKRKVDWLTEKMREAN--------------FTVS  305

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
            S    M Q++++ ++++F+ G   +L++T V   GLD+P  ++++ Y L  N    +   
Sbjct  306  SMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI  365

Query  470  GR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM  513
            GR  R  +   A    +         I +   T +++    V  +
Sbjct  366  GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADL  410


 Score = 44.0 bits (102),  Expect = 0.003, Method: Composition-based stats.
 Identities = 19/131 (15%), Positives = 39/131 (30%), Gaps = 10/131 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTR---AAAYVAKRHLETVDGAKVVVLVNRVHLVTQH  63
            Q   I   ++G+++I    +G GKT     +          V   + ++L     L  Q 
Sbjct  65   QQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI--QVRETQALILAPTRELAVQI  122

Query  64   GEEFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
             +    + D          G          L     ++  T   +   +        +  
Sbjct  123  QKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMI----RRRSLRT  178

Query  123  TVFSLIVVDEC  133
                ++V+DE 
Sbjct  179  RAIKMLVLDEA  189


>sp|Q6CX73|FAL1_KLULA ATP-dependent RNA helicase FAL1 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 
1267 / NRRL Y-1140 / WM37) OX=284590 GN=FAL1 PE=3 SV=1
Length=398

 Score = 112 bits (280),  Expect = 2e-25, Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 57/147 (39%), Gaps = 16/147 (11%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K E     L   + S    + +IF  TR+    L   L Q                   S
Sbjct  247  KEEWKFDTLCDLYDSLTITQCVIFCNTRKKVDWLSRKLTQ--------------TNFSVS  292

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
            S    M Q ++ +V+  F+ G   +L++T V   G+D+   ++V+ Y +  N  + +   
Sbjct  293  SMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRI  352

Query  470  GR-ARADQSVYAF-VATEGSRELKREL  494
            GR  R  +   A    T+  R   +E+
Sbjct  353  GRSGRFGRKGVAINFITKEERPKLKEI  379


 Score = 51.0 bits (120),  Expect = 2e-05, Method: Composition-based stats.
 Identities = 19/129 (15%), Positives = 45/129 (35%), Gaps = 6/129 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q   I   + GK++I    +G GKT      + +         + +VL     L +Q   
Sbjct  50   QSRAISQIISGKDVIAQAQSGTGKTATFTIGLLQAIDSKSKELQALVLSPTRELASQSES  109

Query  66   EFRRMLDGRWTVTTL-SGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
                + D         +G    +     +++   ++  T   +   +    + + + +  
Sbjct  110  VISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQVVSGTPGRVLDMI----KRQVLNVRN  165

Query  125  FSLIVVDEC  133
              ++V+DE 
Sbjct  166  CKILVLDEA  174


>sp|Q4R3Q1|IF4A3_MACFA Eukaryotic initiation factor 4A-III OS=Macaca 
fascicularis OX=9541 GN=EIF4A3 PE=2 SV=3
Length=411

 Score = 112 bits (281),  Expect = 2e-25, Method: Composition-based stats.
 Identities = 29/165 (18%), Positives = 65/165 (39%), Gaps = 19/165 (12%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K + L  +    + +    + +IF  T++    L   +++                   S
Sbjct  264  KFDTLCDL----YDTLTITQAVIFCNTKRKVDWLTEKMREAN--------------FTVS  305

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
            S    M Q++++ ++++F+ G   +L++T V   GLD+P  ++++ Y L  N    +   
Sbjct  306  SMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI  365

Query  470  GR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM  513
            GR  R  +   A    +         I +   T +++    V  +
Sbjct  366  GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADL  410


 Score = 42.1 bits (97),  Expect = 0.015, Method: Composition-based stats.
 Identities = 19/131 (15%), Positives = 39/131 (30%), Gaps = 10/131 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTR---AAAYVAKRHLETVDGAKVVVLVNRVHLVTQH  63
            Q   I   ++G+++I    +G GKT     +          V   + ++L     L  Q 
Sbjct  65   QQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI--QVRETQALILAPARELAVQI  122

Query  64   GEEFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
             +    + D          G          L     ++  T   +   +        +  
Sbjct  123  QKGLLTLGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMI----RRRSLRT  178

Query  123  TVFSLIVVDEC  133
                ++V+DE 
Sbjct  179  RAIKMLVLDEA  189


>sp|P38919|IF4A3_HUMAN Eukaryotic initiation factor 4A-III OS=Homo 
sapiens OX=9606 GN=EIF4A3 PE=1 SV=4
Length=411

 Score = 112 bits (281),  Expect = 2e-25, Method: Composition-based stats.
 Identities = 29/165 (18%), Positives = 65/165 (39%), Gaps = 19/165 (12%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K + L  +    + +    + +IF  T++    L   +++                   S
Sbjct  264  KFDTLCDL----YDTLTITQAVIFCNTKRKVDWLTEKMREAN--------------FTVS  305

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
            S    M Q++++ ++++F+ G   +L++T V   GLD+P  ++++ Y L  N    +   
Sbjct  306  SMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI  365

Query  470  GR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM  513
            GR  R  +   A    +         I +   T +++    V  +
Sbjct  366  GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADL  410


 Score = 44.0 bits (102),  Expect = 0.003, Method: Composition-based stats.
 Identities = 19/131 (15%), Positives = 39/131 (30%), Gaps = 10/131 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTR---AAAYVAKRHLETVDGAKVVVLVNRVHLVTQH  63
            Q   I   ++G+++I    +G GKT     +          V   + ++L     L  Q 
Sbjct  65   QQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI--QVRETQALILAPTRELAVQI  122

Query  64   GEEFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
             +    + D          G          L     ++  T   +   +        +  
Sbjct  123  QKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMI----RRRSLRT  178

Query  123  TVFSLIVVDEC  133
                ++V+DE 
Sbjct  179  RAIKMLVLDEA  189


>sp|B7ZTW1|IF4A3_XENTR Eukaryotic initiation factor 4A-III OS=Xenopus 
tropicalis OX=8364 GN=eif4a3 PE=2 SV=1
Length=415

 Score = 112 bits (281),  Expect = 2e-25, Method: Composition-based stats.
 Identities = 29/165 (18%), Positives = 65/165 (39%), Gaps = 19/165 (12%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K + L  +    + +    + +IF  T++    L   +++                   S
Sbjct  268  KFDTLCDL----YDTLTITQAVIFCNTKRKVDWLTEKMREAN--------------FTVS  309

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
            S    M Q++++ ++++F+ G   +L++T V   GLD+P  ++++ Y L  N    +   
Sbjct  310  SMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI  369

Query  470  GR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM  513
            GR  R  +   A    +         I +   T +++    V  +
Sbjct  370  GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADL  414


 Score = 45.2 bits (105),  Expect = 0.002, Method: Composition-based stats.
 Identities = 19/131 (15%), Positives = 39/131 (30%), Gaps = 10/131 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTR---AAAYVAKRHLETVDGAKVVVLVNRVHLVTQH  63
            Q   I   ++G+++I    +G GKT     +          V   + ++L     L  Q 
Sbjct  69   QQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDI--QVRETQALILAPTRELAGQI  126

Query  64   GEEFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
             +    + D          G          L     ++  T   +   +        +  
Sbjct  127  QKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMI----RRRSLRT  182

Query  123  TVFSLIVVDEC  133
                ++V+DE 
Sbjct  183  RAIKMLVLDEA  193


>sp|Q99MJ9|DDX50_MOUSE ATP-dependent RNA helicase DDX50 OS=Mus 
musculus OX=10090 GN=Ddx50 PE=2 SV=1
Length=734

 Score = 115 bits (288),  Expect = 2e-25, Method: Composition-based stats.
 Identities = 57/365 (16%), Positives = 130/365 (36%), Gaps = 54/365 (15%)

Query  204  CPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVV  263
              +  + +Q+  K+          P  +L  ++     D      ++  +G   Y+ Q+ 
Sbjct  192  LIERLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQIN  251

Query  264  KLSEAAALAGLQEQRVYALHLRRYN------DALLIHDTVRAVDALAA--LQDFYHREHV  315
            ++     +      R+   HL+           +++ +  + +D   A  ++D  H  + 
Sbjct  252  QIRNGIDILVGTPGRI-KDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYK  310

Query  316  TKTQILC----------------AERRLLALFD----------DRKNELAHLATHGPENP  349
            T ++                   A++ + + ++               + HLA     + 
Sbjct  311  TDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQ  370

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            +  ++  +LQ    S +  R IIF  T+++   + +                  I     
Sbjct  371  RPAVIGDVLQVY--SGSEGRAIIFCETKKNVTEMAM---------------NPHIKQNAQ  413

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q  ++  ++ F++G+  +LVAT+VA  GLDIP  ++V++     +  S +   
Sbjct  414  CLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRS  473

Query  470  GR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQ  527
            GR  RA ++           R   R +  +A  T     V +   + +++    IR L  
Sbjct  474  GRTGRAGRTGICVCFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLAS  533

Query  528  AALTK  532
             +   
Sbjct  534  VSYAA  538


 Score = 60.2 bits (144),  Expect = 5e-08, Method: Composition-based stats.
 Identities = 30/133 (23%), Positives = 57/133 (43%), Gaps = 12/133 (9%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVA------KRHLETVDGAKVVVLVNRVHL  59
            Q +   P  EGK++I    TG GKT + A  +       +  ++     KV+VL     L
Sbjct  161  QVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKKSRSPKVLVLAPTREL  220

Query  60   VTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
              Q  ++F+ +   + +V    G    ++    +    D+L+ T   ++  L S      
Sbjct  221  ANQVAKDFKDIT-RKLSVACFYGGTSYQSQINQIRNGIDILVGTPGRIKDHLQS----GR  275

Query  120  VELTVFSLIVVDE  132
            ++L+    +V+DE
Sbjct  276  LDLSKLRHVVLDE  288


>sp|B5DG42|IF4A3_SALSA Eukaryotic initiation factor 4A-III OS=Salmo 
salar OX=8030 GN=eif4a3 PE=2 SV=1
Length=406

 Score = 112 bits (280),  Expect = 2e-25, Method: Composition-based stats.
 Identities = 29/165 (18%), Positives = 65/165 (39%), Gaps = 19/165 (12%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K + L  +    + +    + +IF  T++    L   +++                   S
Sbjct  259  KFDTLCDL----YDTLTITQAVIFCNTKRKVDWLTEKMREAN--------------FTVS  300

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
            S    M Q++++ ++++F+ G   +L++T V   GLD+P  ++++ Y L  N    +   
Sbjct  301  SMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI  360

Query  470  GR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM  513
            GR  R  +   A    +         I +   T +++    V  +
Sbjct  361  GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADL  405


 Score = 45.2 bits (105),  Expect = 0.002, Method: Composition-based stats.
 Identities = 19/131 (15%), Positives = 39/131 (30%), Gaps = 10/131 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTR---AAAYVAKRHLETVDGAKVVVLVNRVHLVTQH  63
            Q   I   ++G+++I    +G GKT     +          V   + ++L     L  Q 
Sbjct  60   QQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDI--QVRETQALILAPTRELAGQI  117

Query  64   GEEFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
             +    + D          G          L     ++  T   +   +        +  
Sbjct  118  QKVLLALGDYMNVQCHSCIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMI----RRRSLRT  173

Query  123  TVFSLIVVDEC  133
                ++V+DE 
Sbjct  174  RAIKMLVLDEA  184


>sp|A7EM88|FAL1_SCLS1 ATP-dependent RNA helicase fal1 OS=Sclerotinia 
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 
GN=fal1 PE=3 SV=1
Length=399

 Score = 112 bits (279),  Expect = 3e-25, Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 58/147 (39%), Gaps = 16/147 (11%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K E     L   + +    + +IF  TR+    L   +++                   S
Sbjct  247  KEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREAN--------------FTVS  292

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
            S    M Q+++  ++Q F+ G   +L++T V   G+D+   ++V+ Y L  N  + +   
Sbjct  293  SMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPVNRENYIHRI  352

Query  470  GR-ARADQSVYAF-VATEGSRELKREL  494
            GR  R  +   A    T     + R++
Sbjct  353  GRSGRFGRKGVAINFVTSEDVRILRDI  379


 Score = 42.9 bits (99),  Expect = 0.009, Method: Composition-based stats.
 Identities = 20/120 (17%), Positives = 40/120 (33%), Gaps = 6/120 (5%)

Query  16   EGKNIIIWLPTGAGKTRAAAYVAKRHLET-VDGAKVVVLVNRVHLVTQHGEEFRRMLDGR  74
            +G++ I    +G GKT   +    + ++T V   + +VL     L TQ       + D  
Sbjct  61   KGRDTIAQAQSGTGKTATFSISMLQVIDTAVRETQALVLSPTRELATQIQSVVMALGDYM  120

Query  75   WTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC  133
                    G          L     ++  T   +   +       ++      ++V+DE 
Sbjct  121  NVQCHACIGGTNVGEDIRKLDYGQHIVSGTPGRVADMI----RRRNLRTRHIKMLVLDEA  176


>sp|Q6FW42|DRS1_CANGA ATP-dependent RNA helicase DRS1 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DRS1 PE=3 SV=1
Length=725

 Score = 115 bits (287),  Expect = 3e-25, Method: Composition-based stats.
 Identities = 37/236 (16%), Positives = 87/236 (37%), Gaps = 19/236 (8%)

Query  336  NELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQT  395
             E   +       P    L   L R+   +   R ++F   +  AH L + L        
Sbjct  426  QEFVRIRKRDHLKP---SLLFNLIRKLDPNGQKRIVVFVARKDMAHKLRIILG-------  475

Query  396  VDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVR  455
                   L+G   +     +TQ  + + + KF+   + +L+ T +A  GLDIP   VV+ 
Sbjct  476  -------LLGMAVAELHGSLTQEQRLDSVNKFKSLQVPVLICTDLASRGLDIPKIEVVIN  528

Query  456  YGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMD  514
            Y +  +    +   GR ARA +   +     G    +R ++ +A+  + +  +   + + 
Sbjct  529  YDMPKSYEIYLHRVGRTARAGREGRSITFV-GEASAERSIVKDAIRGVNDSEIPGSKAVG  587

Query  515  QAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQLLCINCMVAVGHGSDLR  570
            +     ++ +  +               ++++  +   ++        + H  +++
Sbjct  588  RNVDWNQVEETNKIVENMDQTVQDILVEEKEEKEILRAEMELKKGENLLKHKDEIQ  643


 Score = 54.8 bits (130),  Expect = 2e-06, Method: Composition-based stats.
 Identities = 28/128 (22%), Positives = 46/128 (36%), Gaps = 9/128 (7%)

Query  14   ALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA----KVVVLVNRVHLVTQHGEEFRR  69
            AL GK+II    TG+GKT A        L          +V+VL     L  Q  +  ++
Sbjct  240  ALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAKVASTRVIVLTPTRELAIQVADVGKK  299

Query  70   MLDGRWTVTT--LSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSL  127
            +      +T     G +  R     L    D++I T       + +        +    +
Sbjct  300  IGQFVSNLTFGLAVGGLNLRQQEQMLKTRPDIVIATPGRFIDHIRNS---ASFNVDSVEV  356

Query  128  IVVDECHH  135
            +V+DE   
Sbjct  357  LVIDEADR  364


>sp|O25029|RHPA_HELPY DEAD-box ATP-dependent RNA helicase RhpA 
OS=Helicobacter pylori (strain ATCC 700392 / 26695) OX=85962 
GN=rhpA PE=1 SV=1
Length=492

 Score = 113 bits (283),  Expect = 3e-25, Method: Composition-based stats.
 Identities = 37/170 (22%), Positives = 71/170 (42%), Gaps = 17/170 (10%)

Query  356  KILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHM  415
            + + R   +    + I+FTRT++ A  L  +L  +                 +++    M
Sbjct  246  EAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKN--------------YKSTALHGDM  291

Query  416  TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA  474
             QRD++  I  F+    ++LVAT VA  GLDI   + V  Y L  N  S +   GR  RA
Sbjct  292  DQRDRRSSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRA  351

Query  475  DQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD  524
             +   A          +   + + +++ +E  +  +  +++ +    + D
Sbjct  352  GKKGMAITLVTPLEYKELLRMQKEIDSEIE--LFEIPTINENQIIKTLHD  399


 Score = 59.0 bits (141),  Expect = 9e-08, Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 52/127 (41%), Gaps = 5/127 (4%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEE  66
            Q + I   L+G+++I    TG GKT A A     +L+     + +V+     L  Q  +E
Sbjct  47   QEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNLKNNHTIEALVITPTRELAMQISDE  106

Query  67   FRRMLDGRWTVTT-LSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF  125
              ++     T T  + G    +     + +   ++I T   L   L +    + V     
Sbjct  107  IFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHKFVP----  162

Query  126  SLIVVDE  132
             ++V+DE
Sbjct  163  KVVVLDE  169


>sp|O42226|I4A3B_XENLA Eukaryotic initiation factor 4A-III-B OS=Xenopus 
laevis OX=8355 GN=eif4a3-b PE=2 SV=1
Length=414

 Score = 112 bits (280),  Expect = 3e-25, Method: Composition-based stats.
 Identities = 29/165 (18%), Positives = 65/165 (39%), Gaps = 19/165 (12%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K + L  +    + +    + +IF  T++    L   +++                   S
Sbjct  267  KFDTLCDL----YDTLTITQAVIFCNTKRKVDWLTEKMREAN--------------FTVS  308

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
            S    M Q++++ ++++F+ G   +L++T V   GLD+P  ++++ Y L  N    +   
Sbjct  309  SMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI  368

Query  470  GR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM  513
            GR  R  +   A    +         I +   T +++    V  +
Sbjct  369  GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADL  413


 Score = 45.9 bits (107),  Expect = 8e-04, Method: Composition-based stats.
 Identities = 18/131 (14%), Positives = 40/131 (31%), Gaps = 10/131 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTR---AAAYVAKRHLETVDGAKVVVLVNRVHLVTQH  63
            Q + I   ++G+++I    +G GKT     +          +   + ++L     L  Q 
Sbjct  68   QQKAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDI--QIRETQALILAPTKELARQI  125

Query  64   GEEFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
             +    + D          G          L     ++  T   +   +        +  
Sbjct  126  QKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMI----RRRSLRT  181

Query  123  TVFSLIVVDEC  133
                ++V+DE 
Sbjct  182  RAIKMLVLDEA  192


>sp|Q55BR9|DDX49_DICDI Probable ATP-dependent RNA helicase ddx49 
OS=Dictyostelium discoideum OX=44689 GN=ddx49 PE=3 SV=1
Length=508

 Score = 113 bits (283),  Expect = 3e-25, Method: Composition-based stats.
 Identities = 50/267 (19%), Positives = 93/267 (35%), Gaps = 42/267 (16%)

Query  307  QDFYHREHVTKTQILCAERRLLALFD----DRKNELAHLATHGP----ENPKLEMLEKIL  358
            +DF          +   E+R   LF         +L  +A + P    +N K + ++ + 
Sbjct  162  EDFELEIASILEHLPPPEKRQTLLFSATMTKNLTKLDSIALNKPFIFEDNSKYDTVDTLK  221

Query  359  QRQFSSSNSPR---------------GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLL  403
            Q         +                I+F     +  ++   L +              
Sbjct  222  QEYIYMPAPTKDCYLVYILKKHEGSSAIVFVNNCYAVEAVKGMLNKLDIPSV--------  273

Query  404  IGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI  463
                  S  + + Q+ +   ++ F+ G + +LVAT VA  GLDIP   +V+ Y L  +  
Sbjct  274  ------SLHSFLDQKSRLAALKTFKSGKVKVLVATDVASRGLDIPDVQIVINYKLSNSSK  327

Query  464  SMVQARGR-ARADQSVYAF-VATEGSRELKR---ELINEALETLMEQAVAAVQKMDQAEY  518
              +   GR AR  +S  A    T     L +   E+I + LE          + + +A  
Sbjct  328  DYIHRVGRTARFGRSGRAISFITPHDVSLIKGIEEIIKKQLELYKTDDDEVFRHLKEAST  387

Query  519  QAKIRDLQQAALTKRAAQAAQRENQRQ  545
              KI ++    +     Q  +R  + +
Sbjct  388  ARKIVEIHLDEIEFGVKQKERRTERNE  414


 Score = 55.6 bits (132),  Expect = 1e-06, Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 50/136 (37%), Gaps = 5/136 (4%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE  65
            Q   I   L+G++II    TG+GKT + A      L         V+L     L  Q GE
Sbjct  31   QANTIPEILKGRDIIASAKTGSGKTASFAIPILNQLSEDPYGVFAVILTPTRELAVQIGE  90

Query  66   EFRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
            +F  +        + + G +        L +   +++ T   L   L +  +   + L  
Sbjct  91   QFNAIGAPMNVNCSVVIGGIDNVTQALILDKRPHIIVATPGRLASHLNNGLK---IALKF  147

Query  125  FSLIVVDECHHTHKDT  140
               +V+DE      + 
Sbjct  148  CKFLVLDEADRLLGED  163


>sp|B5FZY7|IF4A3_TAEGU Eukaryotic initiation factor 4A-III OS=Taeniopygia 
guttata OX=59729 GN=EIF4A3 PE=2 SV=1
Length=410

 Score = 112 bits (280),  Expect = 3e-25, Method: Composition-based stats.
 Identities = 29/165 (18%), Positives = 65/165 (39%), Gaps = 19/165 (12%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K + L  +    + +    + +IF  T++    L   +++                   S
Sbjct  263  KFDTLCDL----YDTLTITQAVIFCNTKRKVDWLTEKMREAN--------------FTVS  304

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
            S    M Q++++ ++++F+ G   +L++T V   GLD+P  ++++ Y L  N    +   
Sbjct  305  SMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI  364

Query  470  GR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM  513
            GR  R  +   A    +         I +   T +++    V  +
Sbjct  365  GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADL  409


 Score = 43.6 bits (101),  Expect = 0.004, Method: Composition-based stats.
 Identities = 19/131 (15%), Positives = 39/131 (30%), Gaps = 10/131 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTR---AAAYVAKRHLETVDGAKVVVLVNRVHLVTQH  63
            Q   I   ++G+++I    +G GKT     +          V   + ++L     L  Q 
Sbjct  64   QQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI--QVRETQALILAPTRELAVQI  121

Query  64   GEEFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
             +    + D          G          L     ++  T   +   +        +  
Sbjct  122  QKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMI----RRRSLRT  177

Query  123  TVFSLIVVDEC  133
                ++V+DE 
Sbjct  178  RAIKMLVLDEA  188


>sp|Q5BCU6|PRP28_EMENI Pre-mRNA-splicing ATP-dependent RNA helicase 
prp28 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 
/ CBS 112.46 / NRRL 194 / M139) OX=227321 GN=prp28 PE=3 
SV=2
Length=782

 Score = 115 bits (287),  Expect = 3e-25, Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 78/182 (43%), Gaps = 19/182 (10%)

Query  338  LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD  397
               +     E+ + + L +IL    S    P  I+F   +++  ++   ++Q        
Sbjct  595  EQRVEMIAGEDKRKKRLGEILS---SGDFRPPIIVFVNIKRNCDAIAREIKQW-------  644

Query  398  IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG  457
                   G  + +     TQ  ++  +   ++G+ ++LVAT +A  G+D+P  ++V+ + 
Sbjct  645  -------GFSSVTLHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVINFN  697

Query  458  LLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQ  515
            + T+  S     GR  RA +S  A         ++  +L    +++ + +    ++K + 
Sbjct  698  MATSIESYTHRIGRTGRAGKSGVAITFLGNEDADVMYDLKQMLIKSPISRVPEELRKHEA  757

Query  516  AE  517
            A+
Sbjct  758  AQ  759


 Score = 57.5 bits (137),  Expect = 3e-07, Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 64/190 (34%), Gaps = 33/190 (17%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT---------RAAAYVAKRHLETV--DGAKVVVLVN  55
            Q   I  A++ +++I    TG+GKT           A        E    DG   +VL  
Sbjct  373  QRAAIPIAMQSRDLIGVAVTGSGKTAAFLLPLLCYIAELPRIDEFEWRKNDGPYAIVLAP  432

Query  56   RVHLVTQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP  114
               L  Q   E ++  +   + V ++ G          L    +++I T   L   +   
Sbjct  433  TRELAQQIEIEAKKFTEPLGFNVVSIVGGHSFEEQAYSLRNGAEIIIATPGRLVDCI---  489

Query  115  EEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGG  174
             E   + L+    +++DE                   + L   +P+ ++L   A P T  
Sbjct  490  -ERRMLVLSQCCYVIMDEADR---------------MIDLGFEEPVNKILD--ALPVTNE  531

Query  175  ASKLDGAINH  184
                + A + 
Sbjct  532  KPDTEEAEDS  541


>sp|Q5ZM36|IF4A3_CHICK Eukaryotic initiation factor 4A-III OS=Gallus 
gallus OX=9031 GN=EIF4A3 PE=2 SV=1
Length=412

 Score = 112 bits (280),  Expect = 3e-25, Method: Composition-based stats.
 Identities = 29/165 (18%), Positives = 65/165 (39%), Gaps = 19/165 (12%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K + L  +    + +    + +IF  T++    L   +++                   S
Sbjct  265  KFDTLCDL----YDTLTITQAVIFCNTKRKVDWLTEKMREAN--------------FTVS  306

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
            S    M Q++++ ++++F+ G   +L++T V   GLD+P  ++++ Y L  N    +   
Sbjct  307  SMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI  366

Query  470  GR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM  513
            GR  R  +   A    +         I +   T +++    V  +
Sbjct  367  GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADL  411


 Score = 43.6 bits (101),  Expect = 0.004, Method: Composition-based stats.
 Identities = 19/131 (15%), Positives = 39/131 (30%), Gaps = 10/131 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTR---AAAYVAKRHLETVDGAKVVVLVNRVHLVTQH  63
            Q   I   ++G+++I    +G GKT     +          V   + ++L     L  Q 
Sbjct  66   QQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI--QVRETQALILAPTRELAVQI  123

Query  64   GEEFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
             +    + D          G          L     ++  T   +   +        +  
Sbjct  124  QKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMI----RRRSLRT  179

Query  123  TVFSLIVVDEC  133
                ++V+DE 
Sbjct  180  RAIKMLVLDEA  190


>sp|Q9P735|FAL1_NEUCR ATP-dependent RNA helicase fal-1 OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / 
DSM 1257 / FGSC 987) OX=367110 GN=fal-1 PE=3 SV=2
Length=400

 Score = 112 bits (279),  Expect = 3e-25, Method: Composition-based stats.
 Identities = 29/147 (20%), Positives = 59/147 (40%), Gaps = 16/147 (11%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K +     L   + +    + +IF  TR+    L   +++                   S
Sbjct  248  KEDWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREAN--------------FTVS  293

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
            S    M Q+++  ++Q F+ G   +L++T V   G+D+   ++V+ Y L +N  + +   
Sbjct  294  SMHGDMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRI  353

Query  470  GR-ARADQSVYAF-VATEGSRELKREL  494
            GR  R  +   A    T     + R++
Sbjct  354  GRSGRFGRKGVAINFVTSEDVRILRDI  380


 Score = 44.0 bits (102),  Expect = 0.004, Method: Composition-based stats.
 Identities = 21/120 (18%), Positives = 40/120 (33%), Gaps = 6/120 (5%)

Query  16   EGKNIIIWLPTGAGKTRAAAYVAKRHLET-VDGAKVVVLVNRVHLVTQHGEEFRRMLDGR  74
            +G++ I    +G GKT   +    + ++T V   + +VL     L TQ       + D  
Sbjct  62   KGRDTIAQAQSGTGKTATFSISMLQVIDTAVRETQALVLSPTRELATQIQSVVMALGDYM  121

Query  75   WTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC  133
                    G          L     ++  T   +   +       H+      ++V+DE 
Sbjct  122  NVQCHACIGGTNVGEDIRKLDYGQHIVSGTPGRVADMI----RRRHLRTRHIKMLVLDEA  177


>sp|A4QU31|FAL1_PYRO7 ATP-dependent RNA helicase FAL1 OS=Pyricularia 
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 
GN=FAL1 PE=3 SV=1
Length=401

 Score = 112 bits (279),  Expect = 3e-25, Method: Composition-based stats.
 Identities = 29/147 (20%), Positives = 59/147 (40%), Gaps = 16/147 (11%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K +     L   + +    + +IF  TR+    L   +++                   S
Sbjct  249  KEDWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREAN--------------FTVS  294

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
            S    M Q+++  ++Q F+ G   +L++T V   G+D+   ++V+ Y L +N  + +   
Sbjct  295  SMHGDMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRI  354

Query  470  GR-ARADQSVYAF-VATEGSRELKREL  494
            GR  R  +   A    T     + R++
Sbjct  355  GRSGRFGRKGVAINFVTSEDVRILRDI  381


 Score = 44.4 bits (103),  Expect = 0.003, Method: Composition-based stats.
 Identities = 23/129 (18%), Positives = 43/129 (33%), Gaps = 6/129 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLET-VDGAKVVVLVNRVHLVTQHGE  65
            Q   I+   +G++ I    +G GKT   +    + ++T V   + +VL     L TQ   
Sbjct  54   QSRAIVQVCKGRDTIAQAQSGTGKTATFSISMLQVIDTAVRETQALVLSPTRELATQIQS  113

Query  66   EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
                + D          G          L     ++  T   +   +       H+    
Sbjct  114  VVMALGDYMNVQCHACIGGTNVGEDIRKLDYGQHIVSGTPGRVADMI----RRRHLRTRH  169

Query  125  FSLIVVDEC  133
              ++V+DE 
Sbjct  170  IKMLVLDEA  178


>sp|Q1E0Z3|DBP8_COCIM ATP-dependent RNA helicase DBP8 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=DBP8 PE=3 SV=1
Length=536

 Score = 113 bits (283),  Expect = 3e-25, Method: Composition-based stats.
 Identities = 71/402 (18%), Positives = 126/402 (31%), Gaps = 46/402 (11%)

Query  149  YLELKLQRAQPLP-QVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQL  207
            +    L R    P  +  +  +P    A ++      +     +L    I       PQ 
Sbjct  160  FAAPILHRWSEDPFGIFAVVLTPTRELALQIFEQFKAISA-PQSLKPVLITGGSEMRPQA  218

Query  208  QEHSQQPCKQYN---LCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVK  264
               S +P              +    D +  L       L+  +     G       V  
Sbjct  219  IALSTRPHVVIATPGRLADHIKTSGQDTIYGLNRVRMVVLDEADRLLASGPGSMLPDVET  278

Query  265  LSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAE  324
               A   +  ++  ++   + +   AL      R  D L         E+ T       +
Sbjct  279  CLSALPPSTSRQTLLFTATVTQEVRAL--KSMPRPKDRLPIFVTEISTENNTTIPPTLKQ  336

Query  325  RRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLL  384
              L      R+  L  L +    + K                    IIF    ++A    
Sbjct  337  CYLQVPMTHREAFLHVLLSTDANSSK------------------PAIIFCNRTKTA----  374

Query  385  LWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEG  444
                       +  R    +G   +S  + + Q ++   + +F+     LLVAT VA  G
Sbjct  375  ----------DLLDRLLRRLGHRVTSLHSLLPQSERTSNLARFRASAARLLVATDVAARG  424

Query  445  LDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLM  503
            LDIP   +VV + +  N    +   GR ARA +   A     G R+++  L   A+E  +
Sbjct  425  LDIPSVGLVVNFDVPRNPDDYIHRVGRTARAGREGEAITLV-GQRDVQLVL---AIEERV  480

Query  504  EQAVAAVQKMDQAEYQAKIRD--LQQAALTKRAAQAAQRENQ  543
             + + A ++   +     +R   L+     KR A     E +
Sbjct  481  GRQMVAWEEEGVSIEGRIVRGGLLKDVGGAKREALGEIEEGR  522


 Score = 57.1 bits (136),  Expect = 3e-07, Method: Composition-based stats.
 Identities = 42/212 (20%), Positives = 76/212 (36%), Gaps = 7/212 (3%)

Query  15   LEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDG  73
            L+G++ I    TG+GKT A AA +  R  E   G   VVL     L  Q  E+F+ +   
Sbjct  141  LKGRDCIGGSRTGSGKTVAFAAPILHRWSEDPFGIFAVVLTPTRELALQIFEQFKAISAP  200

Query  74   RW-TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDE  132
            +      ++G    R     L+    ++I T   L   + +  ++    L    ++V+DE
Sbjct  201  QSLKPVLITGGSEMRPQAIALSTRPHVVIATPGRLADHIKTSGQDTIYGLNRVRMVVLDE  260

Query  133  CHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANL  192
                      +++      L         Q L  TA+      ++   A+  + +    L
Sbjct  261  ADRLLASGPGSMLPDVETCLSALPPSTSRQTLLFTAT-----VTQEVRALKSMPRPKDRL  315

Query  193  DTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRR  224
              +           +    +Q   Q  + HR 
Sbjct  316  PIFVTEISTENNTTIPPTLKQCYLQVPMTHRE  347


>sp|Q4P184|FAL1_USTMA ATP-dependent RNA helicase FAL1 OS=Ustilago 
maydis (strain 521 / FGSC 9021) OX=237631 GN=FAL1 PE=3 SV=1
Length=397

 Score = 111 bits (278),  Expect = 3e-25, Method: Composition-based stats.
 Identities = 34/165 (21%), Positives = 65/165 (39%), Gaps = 15/165 (9%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K E     L   + +    + +IF  TR+    L   +++                   S
Sbjct  246  KEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLSAKMKENN--------------FQVS  291

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
            S    M Q+++ EV+ +F+ G+  +L+ T V   G+DI + ++V+ Y L TN  + +   
Sbjct  292  SMHGEMQQKERDEVMAEFRQGSSRVLITTDVWARGIDIANISLVINYDLPTNRENYIHRI  351

Query  470  GR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM  513
            GR  R  +   A              I +   T +++    ++ M
Sbjct  352  GRSGRFGRKGVAINFVTVDDVRTLRDIEQFYSTQIDEMPVKLEDM  396


 Score = 44.4 bits (103),  Expect = 0.002, Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 43/128 (34%), Gaps = 6/128 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETV-DGAKVVVLVNRVHLVTQHGE  65
            Q   I+P + G+++I    +G GKT   +    + ++T     + +VL     L  Q   
Sbjct  51   QQRAILPIIRGRDVIAQAQSGTGKTATFSISMLQSIDTTLRETQALVLSPTRELAIQIQS  110

Query  66   EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
                + D          G          L     ++  T   +   +       H+    
Sbjct  111  VVLALGDYLNVQCHACIGGTSVGEDIRKLDYGQHIVSGTPGRVYDMI----RRRHLRTKN  166

Query  125  FSLIVVDE  132
              ++++DE
Sbjct  167  IKMLILDE  174


>sp|Q9BQ39|DDX50_HUMAN ATP-dependent RNA helicase DDX50 OS=Homo 
sapiens OX=9606 GN=DDX50 PE=1 SV=1
Length=737

 Score = 114 bits (286),  Expect = 3e-25, Method: Composition-based stats.
 Identities = 57/365 (16%), Positives = 129/365 (35%), Gaps = 54/365 (15%)

Query  204  CPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVV  263
              +  + +Q+  K+          P  +L  ++     D      ++  +G   Y+ Q+ 
Sbjct  195  LIERLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQIN  254

Query  264  KLSEAAALAGLQEQRVYALHLRRYN------DALLIHDTVRAVDALAA--LQDFYHREHV  315
             +     +      R+   HL+           +++ +  + +D   A  ++D  H  + 
Sbjct  255  HIRNGIDILVGTPGRI-KDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYK  313

Query  316  TKTQILC----------------AERRLLALFD----------DRKNELAHLATHGPENP  349
            T ++                   A++ + + ++               + HLA     + 
Sbjct  314  TDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQ  373

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            +  ++  +LQ    S +  R IIF  T+++   + +                  I     
Sbjct  374  RPAVIGDVLQVY--SGSEGRAIIFCETKKNVTEMAM---------------NPHIKQNAQ  416

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q  ++  ++ F++G+  +LVAT+VA  GLDIP  ++V++     +  S +   
Sbjct  417  CLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRS  476

Query  470  GR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQ  527
            GR  RA ++           R   R +  +A  T     V +   + +++    IR L  
Sbjct  477  GRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLAS  536

Query  528  AALTK  532
             +   
Sbjct  537  VSYAA  541


 Score = 60.6 bits (145),  Expect = 3e-08, Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 58/133 (44%), Gaps = 12/133 (9%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVA------KRHLETVDGAKVVVLVNRVHL  59
            Q +   P  EGK++I    TG GKT + A  +       +  ++     KV+VL     L
Sbjct  164  QVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKKSRSPKVLVLAPTREL  223

Query  60   VTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
              Q  ++F+ +   + +V    G    ++   H+    D+L+ T   ++  L S      
Sbjct  224  ANQVAKDFKDIT-RKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQS----GR  278

Query  120  VELTVFSLIVVDE  132
            ++L+    +V+DE
Sbjct  279  LDLSKLRHVVLDE  291


>sp|Q2UKX3|DBP8_ASPOR ATP-dependent RNA helicase dbp8 OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=dbp8 
PE=3 SV=1
Length=443

 Score = 112 bits (280),  Expect = 4e-25, Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 74/199 (37%), Gaps = 17/199 (9%)

Query  352  EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ  411
            E    +L     +S  P  IIF    ++A  L   L++                   +S 
Sbjct  254  EAFLHVLLSTERNSTKP-AIIFCNHTKTADLLERMLRRLS--------------HRVTSL  298

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
             + + Q ++   + +F+     +LVAT VA  GLDIP  ++V+ + +  N    V   GR
Sbjct  299  HSLLPQSERNSNLARFRASAARILVATDVASRGLDIPSVSLVINFDVPRNPDDYVHRVGR  358

Query  472  -ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAA  529
             ARA +   A  +  +   +L   +       + E +   V    +      ++++ +A 
Sbjct  359  TARAGRHGEAVTLVGQRDVQLVLAIEERVERRMEEWSEEGVSIEGRVVRGGVLKEVGEAK  418

Query  530  LTKRAAQAAQRENQRQQFP  548
                      R+   ++  
Sbjct  419  REASGEIEEGRDVLGRKRN  437


 Score = 59.0 bits (141),  Expect = 8e-08, Method: Composition-based stats.
 Identities = 29/123 (24%), Positives = 53/123 (43%), Gaps = 2/123 (2%)

Query  15   LEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDG  73
            L+G++ I    TG+GKT A A  + ++  +   G   VVL     L  Q  E+ + +   
Sbjct  48   LKGRDCIGGSRTGSGKTIAFAVPILQKWAQDPFGIFAVVLTPTRELALQIYEQIKAISAP  107

Query  74   RWTVTTL-SGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDE  132
            +     L +G    R+    L++   ++I T   L   + +  E+    L    ++V+DE
Sbjct  108  QSMKPLLITGGTDMRSQALALSQRPHVVIATPGRLADHINTSGEDTVCGLKRVRMVVLDE  167

Query  133  CHH  135
               
Sbjct  168  ADR  170


>sp|Q4WPE9|PRP28_ASPFU Pre-mRNA-splicing ATP-dependent RNA helicase 
prp28 OS=Aspergillus fumigatus (strain ATCC MYA-4609 / 
CBS 101355 / FGSC A1100 / Af293) OX=330879 GN=prp28 PE=3 SV=1
Length=796

 Score = 114 bits (286),  Expect = 4e-25, Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 77/182 (42%), Gaps = 19/182 (10%)

Query  338  LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD  397
               +     E+ + + L  IL    S    P  I+F   +++  ++   ++Q        
Sbjct  608  EQRVEMIAGEDKRKKRLADILS---SGEFRPPIIVFVNIKRNCDAIAREIKQ--------  656

Query  398  IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG  457
                  +G  + +     TQ  ++  +   ++G+ ++LVAT +A  G+D+P  ++VV + 
Sbjct  657  ------MGFSSVTLHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFN  710

Query  458  LLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQ  515
            +  +  S     GR  RA +S  A         ++  +L    +++ + +    ++K + 
Sbjct  711  MANSIESYTHRIGRTGRAGKSGVAITFLGNEDADVMYDLKQMLMKSPISRVPEELRKHEA  770

Query  516  AE  517
            A+
Sbjct  771  AQ  772


 Score = 56.7 bits (135),  Expect = 5e-07, Method: Composition-based stats.
 Identities = 29/141 (21%), Positives = 49/141 (35%), Gaps = 16/141 (11%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT---------RAAAYVAKRHLETV--DGAKVVVLVN  55
            Q   I  AL+ +++I    TG+GKT           +        E    DG   +VL  
Sbjct  391  QRAAIPIALQSRDLIGVAVTGSGKTASFLLPLLVYISELPRIDEFEWRKNDGPYAIVLAP  450

Query  56   RVHLVTQHGEEFRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP  114
               L  Q   E R+      + V ++ G          L    +++I T   L   +   
Sbjct  451  TRELAQQIEIEARKFTQPLGFNVVSIVGGHSFEEQAYSLRNGAEIIIATPGRLVDCI---  507

Query  115  EEEEHVELTVFSLIVVDECHH  135
             E   + L+    +++DE   
Sbjct  508  -ERRLLVLSQCCYVIMDEADR  527


>sp|Q0UAT0|FAL1_PHANO ATP-dependent RNA helicase FAL1 OS=Phaeosphaeria 
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) 
OX=321614 GN=FAL1 PE=3 SV=3
Length=374

 Score = 111 bits (277),  Expect = 4e-25, Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 59/147 (40%), Gaps = 16/147 (11%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K E     L   + +    + +IF  TR+    L   +++                   S
Sbjct  222  KEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREAN--------------FTVS  267

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
            S    M QR++  ++Q F+     +L++T V   G+D+   ++V+ Y L +N  + +   
Sbjct  268  SMHGDMPQRERDSIMQDFRQANSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRI  327

Query  470  GR-ARADQSVYAF-VATEGSRELKREL  494
            GR  R  +   A    T+    + R++
Sbjct  328  GRSGRFGRKGVAINFVTQEDVRILRDI  354


>sp|A5DS77|DBP2_LODEL ATP-dependent RNA helicase DBP2 OS=Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=DBP2 PE=3 SV=1
Length=552

 Score = 113 bits (283),  Expect = 4e-25, Method: Composition-based stats.
 Identities = 37/179 (21%), Positives = 72/179 (40%), Gaps = 18/179 (10%)

Query  347  ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA  406
            E  K ++L K L+   + SNS + ++F  T+++   +  +L+                G 
Sbjct  344  EYQKRDLLVKHLESALADSNS-KVLVFASTKRTCDEVTSYLRAD--------------GW  388

Query  407  GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV  466
               +      Q ++  V+++F+ G+ +++VAT VA  G+D+     VV Y +  N    V
Sbjct  389  PALAIHGDKEQHERDWVLKEFRQGSHSIMVATDVAARGIDVKGITHVVNYDMPGNIEDYV  448

Query  467  QAR--GRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIR  523
                               T+  ++L  +L     E   +     +Q  D+  Y + IR
Sbjct  449  HRIGRTGRGGATGTAISFFTDNEKKLGGDLCKIMREA-KQTIPPELQAYDRRSYGSHIR  506


 Score = 51.0 bits (120),  Expect = 3e-05, Method: Composition-based stats.
 Identities = 61/347 (18%), Positives = 118/347 (34%), Gaps = 44/347 (13%)

Query  14   ALEGKNIIIWLPTGAGKTR------AAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEF  67
            AL G++++    TG+GKT            A+  L+  DG  V+VL     L  Q   E 
Sbjct  150  ALSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLLKRGDGPIVLVLAPTRELACQIQTEC  209

Query  68   RRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS  126
             +     R   T + G          LA   ++ I T   L   L + +      L   +
Sbjct  210  SKFGASSRIRNTCVYGGAPKGPQIRDLANGVEICIATPGRLIDMLEAGKTN----LKRVT  265

Query  127  LIVVDECHHTHKDTVYNVIMSQYLELKLQR----AQPLPQVLGLTAS-PGTGGASKLDGA  181
             +V+DE          + ++    E ++++     +P  Q L  +A+ P        D  
Sbjct  266  YLVLDEA---------DRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVQNLARDYL  316

Query  182  INHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIH  241
             N +     +L+     +       + E+ ++     +L    +      L+     +  
Sbjct  317  DNPIQVTIGSLELAASHTITQIVQVVTEYQKRDLLVKHLESALADSNSKVLVFASTKRTC  376

Query  242  DHLEMPELSRKFGT----------QMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDAL  291
            D  E+    R  G           Q     V+K     + + +    V A  +       
Sbjct  377  D--EVTSYLRADGWPALAIHGDKEQHERDWVLKEFRQGSHSIMVATDVAARGIDVKGITH  434

Query  292  LIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNEL  338
            +++      D    ++D+ HR  + +T    A    ++ F D + +L
Sbjct  435  VVN-----YDMPGNIEDYVHR--IGRTGRGGATGTAISFFTDNEKKL  474


>sp|B9XXL6|RHPA_HELP8 DEAD-box ATP-dependent RNA helicase RhpA 
OS=Helicobacter pylori (strain B128) OX=544406 GN=rhpA PE=1 
SV=1
Length=492

 Score = 112 bits (281),  Expect = 4e-25, Method: Composition-based stats.
 Identities = 37/170 (22%), Positives = 71/170 (42%), Gaps = 17/170 (10%)

Query  356  KILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHM  415
            + + R   +    + I+FTRT++ A  L  +L  +                 +++    M
Sbjct  246  EAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKN--------------YKSTALHGDM  291

Query  416  TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA  474
             QRD++  I  F+    ++LVAT VA  GLDI   + V  Y L  N  S +   GR  RA
Sbjct  292  DQRDRRASIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRA  351

Query  475  DQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD  524
             +   A          +   + + +++ +E  +  +  +++ +    + D
Sbjct  352  GKKGMAITLVTPLEYKELLRMQKEIDSEIE--LFEIPTINENQIIKTLHD  399


 Score = 58.7 bits (140),  Expect = 1e-07, Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 52/127 (41%), Gaps = 5/127 (4%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEE  66
            Q + I   L+G+++I    TG GKT A A     +L+     + +V+     L  Q  +E
Sbjct  47   QEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNLKNNHTIEALVITPTRELAMQISDE  106

Query  67   FRRMLDGRWTVTT-LSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF  125
              ++     T T  + G    +     + +   ++I T   L   L +    + V     
Sbjct  107  IFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHKFVP----  162

Query  126  SLIVVDE  132
             ++V+DE
Sbjct  163  KVVVLDE  169


>sp|A3LNL1|PRP28_PICST Pre-mRNA-splicing ATP-dependent RNA helicase 
PRP28 OS=Scheffersomyces stipitis (strain ATCC 58785 / 
CBS 6054 / NBRC 10063 / NRRL Y-11545) OX=322104 GN=PRP28 PE=3 
SV=2
Length=482

 Score = 112 bits (281),  Expect = 4e-25, Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 66/156 (42%), Gaps = 19/156 (12%)

Query  347  ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA  406
            ++ + + L +I+Q+    S     IIF   ++    L L L++      V I        
Sbjct  318  DSKRFDKLVRIIQQHSRESRQFSIIIFANYKRVCDLLSLELEKNGFRDNVVIHGS-----  372

Query  407  GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV  466
                     TQ  +++ I  F+     +L+AT VA  G+D+P+ ++VV + +       V
Sbjct  373  --------KTQELREKAISSFRSHESRILIATDVAARGIDVPNVSLVVNFQMSRKFDEYV  424

Query  467  QARGR-ARADQSVYAFVATEGSR-----ELKRELIN  496
               GR  RA     ++   + S      +LK+ L+N
Sbjct  425  HRIGRTGRAGNRGESYTFIDDSDSDVFIDLKKFLVN  460


 Score = 49.0 bits (115),  Expect = 1e-04, Method: Composition-based stats.
 Identities = 48/318 (15%), Positives = 100/318 (31%), Gaps = 47/318 (15%)

Query  1    MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVA---------KRHLE-------T  44
            +E    Q   I  AL  ++++    TG+GKT  A  +          K +LE        
Sbjct  78   LEPTPIQRAAIPLALNQRDVVGIAETGSGKTL-AFLIPLLSYILNTDKNYLEYEHQQEQN  136

Query  45   VDGAKVVVLVNRVHLVTQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICT  103
             +    ++L     L  Q  +E ++  D     V ++ G          +     +++ T
Sbjct  137  YNKPLGLILAPTRELAQQITKEAQKFGDRLGLNVVSIIGGHQYEETVHSIRTGVHVVVAT  196

Query  104  AELLQMALTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQV  163
               L  +L    E   + L     +++DE           +I   + +        +P  
Sbjct  197  PGRLVDSL----ERNIIGLDKCYYLIMDEADR--------MIDMGFEKALQSILSYVPS-  243

Query  164  LGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHR  223
                        S +D  I H+ +    + T  I  P       +    +P   Y     
Sbjct  244  -------TDRLNSTIDSMIFHIKKRITLMFTATISPPIEKI--TKNFLIKPGYLYIGG--  292

Query  224  RSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALH  283
                  G+ L  ++            S  F ++ +++ V  + + +  +      ++A +
Sbjct  293  -----AGEALDHIVQNFEYLGSATGGSEDFDSKRFDKLVRIIQQHSRESRQFSIIIFANY  347

Query  284  LRRYNDALLIHDTVRAVD  301
             R  +   L  +     D
Sbjct  348  KRVCDLLSLELEKNGFRD  365


>sp|O01836|GLH3_CAEEL ATP-dependent RNA helicase glh-3 OS=Caenorhabditis 
elegans OX=6239 GN=glh-3 PE=1 SV=1
Length=720

 Score = 114 bits (285),  Expect = 5e-25, Method: Composition-based stats.
 Identities = 44/305 (14%), Positives = 101/305 (33%), Gaps = 64/305 (21%)

Query  269  AALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLL  328
              +    E     L   RY   L++ +  R +D++    +    + +    +   ++R  
Sbjct  434  GRVKHFCEDGAIKLDKCRY---LVLDEADRMIDSMGFGPEI--EQIINYKNMPKNDKRQT  488

Query  329  ALFDD----------------------------RKNELAHLATHGPENPKLEMLEKIL--  358
             +F                                  +           K++ L K+L  
Sbjct  489  MMFSATFPSSVQEAARKLLREDYTMITIDKIGAANKCVIQEFELCDRTSKVDKLLKLLGI  548

Query  359  -QRQFSSSNSP-----RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQS  412
                +++  +      + I+F   ++ A +L   +   Q                     
Sbjct  549  DIDTYTTEKNSDVFVKKTIVFVAQQKMADTLASIMSAAQVPAIT--------------IH  594

Query  413  THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-  471
                Q+++   ++ F+ G   +L+AT+V E GLDI   + V+ Y +  N    +   GR 
Sbjct  595  GAREQKERSAALKLFRSGAKPVLIATAVVERGLDIKGVDHVINYDMPNNIDDYIHRIGRT  654

Query  472  ARADQSVYA--FVATEGSRELKRELI------NEALETLMEQAVAAVQKMDQAEYQAKIR  523
             R   S  A  F++     ++  +L+       + + + M++A       ++ E      
Sbjct  655  GRVGNSGRATSFISLADDVQILPQLVRTLADAEQVVPSWMKEAAGGTSNPNKFEKSIDTE  714

Query  524  DLQQA  528
            + ++A
Sbjct  715  EPEEA  719


 Score = 51.3 bits (121),  Expect = 3e-05, Method: Composition-based stats.
 Identities = 43/286 (15%), Positives = 92/286 (32%), Gaps = 22/286 (8%)

Query  16   EGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA------------KVVVLVNRVHLVTQH  63
            +GK+I+    TG+GKT  AA++       +               + ++L     L  Q 
Sbjct  334  DGKDILACAQTGSGKT--AAFLLPIMSRLILEKDLNYGAEGGCYPRCIILTPTRELADQI  391

Query  64   GEEFRRMLDGRW-TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
              E R+        +  + G +        + +   +++ T   ++       E+  ++L
Sbjct  392  YNEGRKFSYQSVMEIKPVYGGINVGYNKSQIMKGCTIIVGTIGRVKH----FCEDGAIKL  447

Query  123  TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAI  182
                 +V+DE         +   + Q +  K        Q +  +A+     +S  + A 
Sbjct  448  DKCRYLVLDEADRMIDSMGFGPEIEQIINYKNMPKNDKRQTMMFSAT---FPSSVQEAAR  504

Query  183  NHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHD  242
              + +    +    I +   C  Q  E   +  K   L      D      +K  D    
Sbjct  505  KLLREDYTMITIDKIGAANKCVIQEFELCDRTSKVDKLLKLLGIDIDTYTTEKNSDVFVK  564

Query  243  HLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN  288
               +    +K    +          A  + G +EQ+  +  L+ + 
Sbjct  565  KTIVFVAQQKMADTLASIMSAAQVPAITIHGAREQKERSAALKLFR  610


>sp|Q4WXW1|DBP8_ASPFU ATP-dependent RNA helicase dbp8 OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 
/ Af293) OX=330879 GN=dbp8 PE=3 SV=1
Length=526

 Score = 113 bits (282),  Expect = 5e-25, Method: Composition-based stats.
 Identities = 45/209 (22%), Positives = 80/209 (38%), Gaps = 23/209 (11%)

Query  338  LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD  397
            L       P   +   L  +L      + S   I+F    ++A  L   L++        
Sbjct  324  LKQTYLKVPLTHREAFLHVLLST--EGNASKPAIVFCNHTKTADLLERMLRRLS------  375

Query  398  IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG  457
                       +S  + + Q ++   + +F+     +LVAT VA  GLDIP  ++V+ Y 
Sbjct  376  --------HRVTSLHSLLPQSERNANLARFRASAARILVATDVASRGLDIPTVSLVINYD  427

Query  458  LLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQA  516
            +  N    V   GR ARA +   A     G R+++  L   A+E  + + +    +   +
Sbjct  428  VPRNPDDYVHRVGRTARAGRRGEAVTLV-GQRDVQLVL---AIEERVGRQMEEWSEEGVS  483

Query  517  EYQAKIRD--LQQAALTKRAAQAAQRENQ  543
                 +R   L++    KR A     E +
Sbjct  484  IEGRLVRTGALKEVGEAKREAMVEIDEGR  512


 Score = 55.6 bits (132),  Expect = 1e-06, Method: Composition-based stats.
 Identities = 31/130 (24%), Positives = 50/130 (38%), Gaps = 4/130 (3%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYV--AKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLD  72
            L+G++ I    TG+GKT  A  V   ++  E   G   VVL     L  Q  E+ + +  
Sbjct  131  LKGRDCIGGSRTGSGKT-IAFSVPMLQKWAEDPFGIFGVVLTPTRELALQIFEQIKAISA  189

Query  73   GRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVD  131
             +      ++G    R     LA    ++I T   L   + S  E+    L    ++V+D
Sbjct  190  PQSMKPVLITGGTDMRPQAIALAGRPHVVIATPGRLADHIKSSGEDTVCGLKRVRMVVLD  249

Query  132  ECHHTHKDTV  141
            E         
Sbjct  250  EADRLLASGP  259


>sp|Q4IAA0|FAL1_GIBZE ATP-dependent RNA helicase FAL1 OS=Gibberella 
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / 
NRRL 31084 / PH-1) OX=229533 GN=FAL1 PE=3 SV=1
Length=401

 Score = 111 bits (277),  Expect = 5e-25, Method: Composition-based stats.
 Identities = 29/147 (20%), Positives = 59/147 (40%), Gaps = 16/147 (11%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K +     L   + +    + +IF  TR+    L   +++                   S
Sbjct  249  KEDWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREAN--------------FTVS  294

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
            S    M Q+++  ++Q F+ G   +L++T V   G+D+   ++V+ Y L +N  + +   
Sbjct  295  SMHGDMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRI  354

Query  470  GR-ARADQSVYAF-VATEGSRELKREL  494
            GR  R  +   A    T     + R++
Sbjct  355  GRSGRFGRKGVAINFVTTEDVRILRDI  381


 Score = 44.4 bits (103),  Expect = 0.003, Method: Composition-based stats.
 Identities = 23/129 (18%), Positives = 43/129 (33%), Gaps = 6/129 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLET-VDGAKVVVLVNRVHLVTQHGE  65
            Q   I+   +G++ I    +G GKT   +    + ++T V   + +VL     L TQ   
Sbjct  54   QSRAIVQVCKGRDTIAQAQSGTGKTATFSISMLQVIDTAVRETQALVLSPTRELATQIQS  113

Query  66   EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
                + D          G          L     ++  T   +   +       H+    
Sbjct  114  VVMALGDYMNVQCHACIGGTNVGEDIRKLDYGQHIVSGTPGRVADMI----RRRHLRTRH  169

Query  125  FSLIVVDEC  133
              ++V+DE 
Sbjct  170  IKMLVLDEA  178


>sp|A1CX72|PRP28_NEOFI Pre-mRNA-splicing ATP-dependent RNA helicase 
prp28 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 
3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) 
OX=331117 GN=prp28 PE=3 SV=1
Length=796

 Score = 114 bits (285),  Expect = 5e-25, Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 77/182 (42%), Gaps = 19/182 (10%)

Query  338  LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD  397
               +     E+ + + L  IL    S    P  I+F   +++  ++   ++Q        
Sbjct  608  EQRVEMIAGEDKRKKRLADILS---SGEFRPPIIVFVNIKRNCDAIAREIKQ--------  656

Query  398  IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG  457
                  +G  + +     TQ  ++  +   ++G+ ++LVAT +A  G+D+P  ++VV + 
Sbjct  657  ------MGFSSVTLHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFN  710

Query  458  LLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQ  515
            +  +  S     GR  RA +S  A         ++  +L    +++ + +    ++K + 
Sbjct  711  MANSIESYTHRIGRTGRAGKSGVAITFLGNEDADVMYDLKQMLMKSPISRVPEELRKHEA  770

Query  516  AE  517
            A+
Sbjct  771  AQ  772


 Score = 56.7 bits (135),  Expect = 6e-07, Method: Composition-based stats.
 Identities = 29/141 (21%), Positives = 49/141 (35%), Gaps = 16/141 (11%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT---------RAAAYVAKRHLETV--DGAKVVVLVN  55
            Q   I  AL+ +++I    TG+GKT           +        E    DG   +VL  
Sbjct  391  QRAAIPIALQSRDLIGVAVTGSGKTASFLLPLLVYISELPRIDEFEWRKNDGPYAIVLAP  450

Query  56   RVHLVTQHGEEFRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP  114
               L  Q   E R+      + V ++ G          L    +++I T   L   +   
Sbjct  451  TRELAQQIEIEARKFTQPLGFNVVSIVGGHSFEEQAYSLRNGAEIIIATPGRLVDCI---  507

Query  115  EEEEHVELTVFSLIVVDECHH  135
             E   + L+    +++DE   
Sbjct  508  -ERRLLVLSQCCYVIMDEADR  527


>sp|Q86XP3|DDX42_HUMAN ATP-dependent RNA helicase DDX42 OS=Homo 
sapiens OX=9606 GN=DDX42 PE=1 SV=1
Length=938

 Score = 114 bits (286),  Expect = 5e-25, Method: Composition-based stats.
 Identities = 57/301 (19%), Positives = 102/301 (34%), Gaps = 55/301 (18%)

Query  234  KKLMDQIHDHLE------MPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRY  287
            ++L  QIH   +             +G     +Q   L E A +      R+     ++ 
Sbjct  336  RELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKA  395

Query  288  -----NDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLL--ALFDDRKNELAH  340
                    L+  +  R  D       F ++     + +    + LL  A F  +  +LA 
Sbjct  396  TNLQRVSYLVFDEADRMFDM-----GFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLAR  450

Query  341  LATHGPE----------NPKLEMLEKIL-----------QRQFSSSNSPRGIIFTRTRQS  379
                 P           N  +  + +IL           +R    ++S   ++F   + +
Sbjct  451  DILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKAN  510

Query  380  AHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATS  439
            A  L   L+Q+              G         M Q ++ +VI  F+   + +LVAT 
Sbjct  511  AEELANNLKQE--------------GHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATD  556

Query  440  VAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINE  497
            VA  GLDIP    V+ Y +  +  +     GR  RA +   A+ + T        +L+  
Sbjct  557  VAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRN  616

Query  498  A  498
             
Sbjct  617  L  617


 Score = 63.3 bits (152),  Expect = 6e-09, Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 51/138 (37%), Gaps = 15/138 (11%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT--RAAAYVA----KRHLETVDGAKVVVLVNRVHLV  60
            Q + +  AL G+++I    TG+GKT       +     ++ LE  DG   V++     L 
Sbjct  280  QCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELC  339

Query  61   TQHGEEFRRMLDG---RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE  117
             Q   E +R       R       G M  +A    L    ++++CT   L   +      
Sbjct  340  QQIHAECKRFGKAYNLRSVAVYGGGSMWEQA--KALQEGAEIVVCTPGRLIDHVKKKATN  397

Query  118  EHVELTVFSLIVVDECHH  135
                L   S +V DE   
Sbjct  398  ----LQRVSYLVFDEADR  411


>sp|Q6CEB8|DRS1_YARLI ATP-dependent RNA helicase DRS1 OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DRS1 PE=3 
SV=1
Length=753

 Score = 114 bits (285),  Expect = 5e-25, Method: Composition-based stats.
 Identities = 46/208 (22%), Positives = 78/208 (38%), Gaps = 25/208 (12%)

Query  339  AHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI  398
              +     ++ K  +L  IL++        R IIF   +++AH L + L           
Sbjct  473  EFVRIRKRDHLKPALLASILKKM---DKEQRTIIFVARKETAHRLRIMLG----------  519

Query  399  RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL  458
                L+G         ++Q  + + I  F+   + +LV T +A  GLDIP    VV Y +
Sbjct  520  ----LLGVRIGELHGALSQEQRLQSITAFKKLEVPILVCTDLASRGLDIPKIECVVNYDM  575

Query  459  LTNEISMVQARGR-ARADQSVYAFVA---TEGSRELKRELINEALETLMEQAVAAVQKMD  514
                   +   GR ARA +   +          R + RE I    E+   +AV       
Sbjct  576  PQTHAVYLHRVGRTARAGREGRSITLVGEAAADRAIVREAIKSVSESKQGKAVGRNVDWP  635

Query  515  Q-AEYQAKIR---DLQQAALTKRAAQAA  538
            +  +  +KI    D+    L +   + A
Sbjct  636  EVEKLYSKIEEKGDIVNEILAEEKEEKA  663


 Score = 51.0 bits (120),  Expect = 3e-05, Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 47/135 (35%), Gaps = 9/135 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA----KVVVLVNRVHLVTQ  62
            Q   I  AL GK+++    TG+GKT A        L          KVVVL     L  Q
Sbjct  279  QSRTIPIALMGKDLVAGAVTGSGKTAAYIIPVLERLLYKSSKVAATKVVVLTPTRELSIQ  338

Query  63   HGEEFRRMLDGRWTV--TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
              +  +++      V      G +  R     L    +++I T       + +       
Sbjct  339  VADVGKKLAQYVSGVRFGLAVGGLNLRVQEQELKTRPEVVIATPGRFIDHVRNSPS---F  395

Query  121  ELTVFSLIVVDECHH  135
             +    ++V+DE   
Sbjct  396  NVDDVEILVIDEADR  410


>sp|A7EGG4|PRP28_SCLS1 Pre-mRNA-splicing ATP-dependent RNA helicase 
prp28 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 
1980 / Ss-1) OX=665079 GN=prp28 PE=3 SV=1
Length=816

 Score = 114 bits (285),  Expect = 5e-25, Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 79/191 (41%), Gaps = 19/191 (10%)

Query  332  DDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQ  391
            +  +     +     E+ + + L +IL    S    P  I+F   +++  ++   ++   
Sbjct  620  EAVETVEQRVEFVAGEDKRKKRLNEILA---SGEFQPPIIVFVNIKRNCDAVARDIKH--  674

Query  392  GLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN  451
                        +G  + +     TQ  ++  +   + G  N+LVAT +A  G+D+P  +
Sbjct  675  ------------MGFTSVTLHGSKTQEQREAALASVRSGATNVLVATDLAGRGIDVPDVS  722

Query  452  VVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAA  509
            +VV + + TN  S     GR  RA +S  A         +   +L    +++ + +    
Sbjct  723  LVVNFNMATNIESYTHRIGRTGRAGKSGVAITFLGNEDADTMYDLKQMLMKSSISRVPEE  782

Query  510  VQKMDQAEYQA  520
            ++K + A+ ++
Sbjct  783  LRKHEAAQQKS  793


 Score = 59.8 bits (143),  Expect = 7e-08, Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 47/140 (34%), Gaps = 16/140 (11%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT---------RAAAYVAKRHLETVDGAKVVVLVNRV  57
            Q   I  AL+ +++I    TG+GKT           +           DG   ++L    
Sbjct  406  QRAAIPIALQARDLIGVAVTGSGKTAAFLLPLLVYISELPPLNEFTKNDGPYAIILAPTR  465

Query  58   HLVTQHGEEFRR--MLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE  115
             L  Q  E   +       +T  ++ G         +L    +++I T   L   +    
Sbjct  466  EL-AQQIEVEAKKFATPLGFTCVSIVGGHSLEEQSYNLRNGAEIIIATPGRLVDCI----  520

Query  116  EEEHVELTVFSLIVVDECHH  135
            E   + L     I++DE   
Sbjct  521  ERRVLVLGQCCYIIMDEADR  540


>sp|Q810A7|DDX42_MOUSE ATP-dependent RNA helicase DDX42 OS=Mus 
musculus OX=10090 GN=Ddx42 PE=1 SV=3
Length=929

 Score = 114 bits (285),  Expect = 6e-25, Method: Composition-based stats.
 Identities = 57/301 (19%), Positives = 102/301 (34%), Gaps = 55/301 (18%)

Query  234  KKLMDQIHDHLE------MPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRY  287
            ++L  QIH   +             +G     +Q   L E A +      R+     ++ 
Sbjct  336  RELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKA  395

Query  288  -----NDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLL--ALFDDRKNELAH  340
                    L+  +  R  D       F ++     + +    + LL  A F  +  +LA 
Sbjct  396  TNLQRVSYLVFDEADRMFDM-----GFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLAR  450

Query  341  LATHGPE----------NPKLEMLEKIL-----------QRQFSSSNSPRGIIFTRTRQS  379
                 P           N  +  + +IL           +R    ++S   ++F   + +
Sbjct  451  DILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKAN  510

Query  380  AHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATS  439
            A  L   L+Q+              G         M Q ++ +VI  F+   + +LVAT 
Sbjct  511  AEELASNLKQE--------------GHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATD  556

Query  440  VAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINE  497
            VA  GLDIP    V+ Y +  +  +     GR  RA +   A+ + T        +L+  
Sbjct  557  VAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRN  616

Query  498  A  498
             
Sbjct  617  L  617


 Score = 63.3 bits (152),  Expect = 6e-09, Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 51/138 (37%), Gaps = 15/138 (11%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT--RAAAYVA----KRHLETVDGAKVVVLVNRVHLV  60
            Q + +  AL G+++I    TG+GKT       +     ++ LE  DG   V++     L 
Sbjct  280  QCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELC  339

Query  61   TQHGEEFRRMLDG---RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE  117
             Q   E +R       R       G M  +A    L    ++++CT   L   +      
Sbjct  340  QQIHAECKRFGKAYNLRSVAVYGGGSMWEQA--KALQEGAEIVVCTPGRLIDHVKKKATN  397

Query  118  EHVELTVFSLIVVDECHH  135
                L   S +V DE   
Sbjct  398  ----LQRVSYLVFDEADR  411


>sp|Q94A52|RH2_ARATH Eukaryotic initiation factor 4A-III homolog 
OS=Arabidopsis thaliana OX=3702 GN=EIF4A3 PE=1 SV=2
Length=408

 Score = 111 bits (277),  Expect = 7e-25, Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 62/166 (37%), Gaps = 17/166 (10%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K E     L   + +    + +IF  T++    L   ++                    S
Sbjct  257  KEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDYLSEKMRSHN--------------FTVS  302

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
            S    M Q+++  ++ +F+ G   +L+ T V   G+D+   ++V+ Y L  N    +   
Sbjct  303  SMHGDMPQKERDAIMNEFRSGDSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRI  362

Query  470  GR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKM  513
            GR  R  +   A         ++ R+ I +   T +++    V  +
Sbjct  363  GRSGRFGRKGVAINFVKSDDIKILRD-IEQYYSTQIDEMPMNVADL  407


 Score = 48.6 bits (114),  Expect = 1e-04, Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 44/128 (34%), Gaps = 6/128 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT-RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q   +MP L+G+++I    +G GKT   A  V +    +    + ++L     L TQ  +
Sbjct  62   QQRAVMPILQGRDVIAQAQSGTGKTSMIALSVCQVVDTSSREVQALILSPTRELATQTEK  121

Query  66   EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
              + +            G          L     ++  T   +   +        +    
Sbjct  122  TIQAIGLHANIQAHACIGGNSVGEDIRKLEHGVHVVSGTPGRVCDMIKRRS----LRTRA  177

Query  125  FSLIVVDE  132
              L+++DE
Sbjct  178  IKLLILDE  185


>sp|P41381|IF4A8_TOBAC Eukaryotic initiation factor 4A-8 OS=Nicotiana 
tabacum OX=4097 PE=2 SV=1
Length=413

 Score = 111 bits (277),  Expect = 7e-25, Method: Composition-based stats.
 Identities = 34/201 (17%), Positives = 75/201 (37%), Gaps = 20/201 (10%)

Query  315  VTKTQILCAERRLLALFDDRKNELAHLATH-GPENPKLEMLEKILQRQFSSSNSPRGIIF  373
            +T+  +    R L+   +     +     +   E  KLE L  +    + +    + +IF
Sbjct  230  ITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDL----YETLAITQSVIF  285

Query  374  TRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN  433
              TR+    L   ++ +                  S+    M Q  +  ++++F+ G+  
Sbjct  286  VNTRRKVDWLTDKMRTRD--------------HTVSATHGDMDQNTRDIIMREFRSGSSR  331

Query  434  LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKR  492
            +L+ T +   G+D+   ++V+ Y L T   + +   GR  R  +   A        E   
Sbjct  332  VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTDDERML  391

Query  493  ELINEALETLMEQAVAAVQKM  513
              I +    ++E+  + V  +
Sbjct  392  FDIQKFYNVIIEELPSNVADL  412


>sp|Q5ACK7|DRS1_CANAL ATP-dependent RNA helicase DRS1 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DRS1 
PE=3 SV=1
Length=613

 Score = 113 bits (282),  Expect = 7e-25, Method: Composition-based stats.
 Identities = 59/352 (17%), Positives = 121/352 (34%), Gaps = 44/352 (13%)

Query  205  PQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVK  264
            P ++    +P     +            + +   ++  H+    +    G     QQ  +
Sbjct  187  PIIERLLYKPSTSTKVIILTPTRELALQVYEFGKKLSHHVNNLNIGLAVGGLNLRQQEEQ  246

Query  265  LSEAAALAGLQEQRVYALHLR-------RYNDALLIHDTVRAV-----DALAALQDFYHR  312
            L     +      R+   H+R       +    L+I +  R +     D L  +     +
Sbjct  247  LKTRPDIVIATPGRLID-HIRNSPSFSVQDIQVLVIDEADRMLEEGFQDELTEILSLIPK  305

Query  313  EHVTKTQILCA-ERRLLALFDDRKNELAHLATHGPENP------------KLEMLEKILQ  359
                          R+  L      +   +    P++             K + L+  L 
Sbjct  306  HKRQTLLFSATMNTRIQDLIQLSLQKPVRIMIDPPKSVASKLLQQFVRIRKRDQLKPALL  365

Query  360  RQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRD  419
             Q     S R ++F   +++AH L + L               L+G   S     +TQ  
Sbjct  366  YQLLKGVSSRVVVFVARKETAHRLRIVLG--------------LLGLKVSELHGALTQEQ  411

Query  420  QQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSV  478
            + + ++ F+   + +L+ T +A  GLDIP   +V+ Y +       +   GR ARA +  
Sbjct  412  RLQNVKNFKSLEVPVLICTDLAARGLDIPKIELVINYDMPKTFEIYLHRVGRTARAGRDG  471

Query  479  YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAAL  530
             +     G    +R ++  A+  +  + VA      QAE   K+ + +++ +
Sbjct  472  TSITFV-GESSQERAIVKSAI--VNGKGVAKTVDWKQAEETNKLLESKESVI  520


 Score = 53.3 bits (126),  Expect = 5e-06, Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 45/126 (36%), Gaps = 7/126 (6%)

Query  14   ALEGKNIIIWLPTGAGKTRAAAYVAKR--HLETVDGAKVVVLVNRVHLVTQHGEEFRR--  69
            AL GK+I+    TG+GKT A           +     KV++L     L  Q  E  ++  
Sbjct  164  ALLGKDIVAGAQTGSGKTGAYMIPIIERLLYKPSTSTKVIILTPTRELALQVYEFGKKLS  223

Query  70   MLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIV  129
                   +    G +  R     L    D++I T   L   + +        +    ++V
Sbjct  224  HHVNNLNIGLAVGGLNLRQQEEQLKTRPDIVIATPGRLIDHIRNSPS---FSVQDIQVLV  280

Query  130  VDECHH  135
            +DE   
Sbjct  281  IDEADR  286


>sp|Q40469|IF4A6_TOBAC Eukaryotic initiation factor 4A-6 (Fragment) 
OS=Nicotiana tabacum OX=4097 PE=2 SV=1
Length=253

 Score = 107 bits (267),  Expect = 8e-25, Method: Composition-based stats.
 Identities = 34/201 (17%), Positives = 75/201 (37%), Gaps = 20/201 (10%)

Query  315  VTKTQILCAERRLLALFDDRKNELAHLATH-GPENPKLEMLEKILQRQFSSSNSPRGIIF  373
            +T+  +    R L+   +     +     +   E  KLE L  +    + +    + +IF
Sbjct  71   ITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDL----YETLAITQSVIF  126

Query  374  TRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN  433
              TR+    L   ++ +                  S+    M Q  +  ++++F+ G+  
Sbjct  127  VNTRRKVDWLTDKMRGRD--------------HTVSATHGDMDQNTRDIIMREFRSGSSR  172

Query  434  LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKR  492
            +L+ T +   G+D+   ++V+ Y L T   + +   GR  R  +   +        E   
Sbjct  173  VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVSINFVTKDDERML  232

Query  493  ELINEALETLMEQAVAAVQKM  513
              I +    ++E+  A V  +
Sbjct  233  FDIQKFYNVVIEELPANVADL  253


>sp|Q26696|DDX17_TRYBB Putative DEAD-box RNA helicase HEL64 OS=Trypanosoma 
brucei brucei OX=5702 GN=HEL64 PE=3 SV=1
Length=568

 Score = 112 bits (281),  Expect = 8e-25, Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 74/205 (36%), Gaps = 27/205 (13%)

Query  347  ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA  406
            E  K + L K++Q         R ++F + +++A  L   L++               G 
Sbjct  329  EFAKQDELRKLMQEH----REERVLVFCKMKRTADELERQLRRW--------------GY  370

Query  407  GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV  466
               +      QR ++ ++ +F+      LVAT VA  GLDI     V+ Y         V
Sbjct  371  DAMAIHGDKEQRQREFILARFRKDPRLCLVATDVAARGLDIKQLETVINYDFPMQIDDYV  430

Query  467  QARGR-ARADQSVYA-FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD  524
               GR  RA       ++ T+   ++   ++ E +  ++E+A   +             +
Sbjct  431  HRIGRTGRAGGEGRCVYLITKKEAQITPSVLKELIG-ILERAQQEIPDWMIEW------N  483

Query  525  LQQAALTKRAAQAAQRENQRQQFPV  549
             QQ     +  +      + Q  P 
Sbjct  484  AQQPRYQVKRNRGMNGFGRHQSAPF  508


 Score = 59.8 bits (143),  Expect = 5e-08, Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 50/127 (39%), Gaps = 10/127 (8%)

Query  15   LEGKNIIIWLPTGAGKTR------AAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFR  68
            L G++++    TG+GKT        A    +  L + DG  VVVL     L  Q  EE +
Sbjct  137  LSGRDLVGVAKTGSGKTLGFMVPALAHIAVQEPLRSGDGPMVVVLAPTRELAQQIEEETK  196

Query  69   RMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLI  128
            +++ G      + G        G L R   +L+ T   L   L        + L   + +
Sbjct  197  KVIPGDVYCGCVYGGAPKGPQLGLLRRGVHILVATPGRLIDFLDIKR----INLHRVTYL  252

Query  129  VVDECHH  135
            V+DE   
Sbjct  253  VLDEADR  259


>sp|Q0V1Z7|DRS1_PHANO ATP-dependent RNA helicase DRS1 OS=Phaeosphaeria 
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) 
OX=321614 GN=DRS1 PE=3 SV=1
Length=808

 Score = 113 bits (283),  Expect = 8e-25, Method: Composition-based stats.
 Identities = 61/367 (17%), Positives = 135/367 (37%), Gaps = 39/367 (11%)

Query  201  QNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQ  260
            +    Q    + +     ++        F    +++M +    + +     +F   M+  
Sbjct  366  RELAVQCFNVATKLASFTDITFALLAGGFSSREQEVMLKTRPDVVIA-TPGRFIDHMHNT  424

Query  261  QVVKLSEAAALAGLQEQRVYALHLR-RYNDALLIHDTVRAVDALAALQDFYHREHVTKTQ  319
               ++     L   +  R+       + N+ L      R     +A         V K  
Sbjct  425  AAFQVEHLEILVLDEADRMLEEGFETQLNEILTTIPKSRQTMLFSAT----MTSTVDKLI  480

Query  320  ILCAERRLLALFDDRKNELAHLA------THGPENPKLEMLEKILQRQFSSSNSPRGIIF  373
             +  ++ +  + D +K+ +  L         G E+ +L  L  I ++ ++     R IIF
Sbjct  481  RIGMDKPVRLMVDAKKHTVKGLTQEFIRLRQGKEDKRLAYLMYICEKIYTE----RVIIF  536

Query  374  TRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN  433
             R ++ AH + +                 L G   S    +M+Q  + + ++ F+ G  +
Sbjct  537  FRQKKEAHRVRVVF--------------ALCGLKASELHGNMSQEQRIQAVEAFRSGKSS  582

Query  434  LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYA-FVATEGSRELK  491
             L+AT VA  GLDI + + V+ Y    +    +   GR ARA +S  A  +A E  R++ 
Sbjct  583  YLLATDVASRGLDIKNVSTVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKVV  642

Query  492  RELINEAL----ETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQ---RENQR  544
            ++ + ++     + +  Q           + +    +++     ++  +      R+ +R
Sbjct  643  KQAVKQSRDQGSKVVSRQVPVEETDRWMEKLRGLEDEIEDVLKEEKEERTLSITERDLKR  702

Query  545  QQFPVEH  551
                +EH
Sbjct  703  GMNLIEH  709


 Score = 47.5 bits (111),  Expect = 4e-04, Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 47/136 (35%), Gaps = 12/136 (9%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT---RAAAY-VAKRHLETVDGAKVVVLVNRVHLVTQ  62
            Q + I  A++GK+++    TG+GKT               + V   +V + +    L  Q
Sbjct  312  QAKAIPIAMQGKDVVGGAETGSGKTAAFLIPILERLLYRPKKVPTTRVAIFMPTRELAVQ  371

Query  63   HGEE---FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
                        D  +    L+G    R     L    D++I T       + +      
Sbjct  372  CFNVATKLASFTDITF--ALLAGGFSSREQEVMLKTRPDVVIATPGRFIDHMHNT---AA  426

Query  120  VELTVFSLIVVDECHH  135
             ++    ++V+DE   
Sbjct  427  FQVEHLEILVLDEADR  442


>sp|Q4FZF3|DDX49_MOUSE Probable ATP-dependent RNA helicase DDX49 
OS=Mus musculus OX=10090 GN=Ddx49 PE=2 SV=1
Length=480

 Score = 112 bits (279),  Expect = 8e-25, Method: Composition-based stats.
 Identities = 45/209 (22%), Positives = 78/209 (37%), Gaps = 16/209 (8%)

Query  346  PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
            PE  K   L  ++Q           IIFT T ++   L + L++                
Sbjct  227  PEKVKDAYLVHLVQTFQDQLEDCSIIIFTNTCKTCQILCMMLRKFNFPTV----------  276

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM  465
                +  + M Q+++   + KF+     +L+AT VA  GLDIP   VV+ +         
Sbjct  277  ----ALHSMMKQKERFAALAKFKSSIYRILIATDVASRGLDIPTVQVVINHNTPGLPKIY  332

Query  466  VQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIR  523
            +   GR ARA +   A  + T+    L   +  +  + L E  V   + +        +R
Sbjct  333  IHRVGRTARAGRQGQAITLVTQYDIHLLHAIEEQIKQQLAELVVEEAEVLQILTQVNVVR  392

Query  524  DLQQAALTKRAAQAAQRENQRQQFPVEHV  552
               +  L        +  N+R+Q  +E  
Sbjct  393  RECEIKLEASHFDEKKEINKRKQMILEGK  421


 Score = 57.5 bits (137),  Expect = 3e-07, Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 47/131 (36%), Gaps = 5/131 (4%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE  65
            Q   I   LEG++ +    TG+GKT A      + L         +VL     L  Q  E
Sbjct  29   QLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSEDPYGIFCLVLTPTRELAYQIAE  88

Query  66   EFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
            +FR +          + G M   A    L+R   ++I T   L   L S        +  
Sbjct  89   QFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIATPGRLADHLRSSNT---FNMKK  145

Query  125  FSLIVVDECHH  135
               +V+DE   
Sbjct  146  IQFLVMDEADR  156


>sp|Q10055|FAL1_SCHPO ATP-dependent RNA helicase fal1 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=tif412 
PE=1 SV=1
Length=394

 Score = 110 bits (275),  Expect = 9e-25, Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 66/166 (40%), Gaps = 17/166 (10%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K E     L   + +    + +IF  +R+    L   +++       +     + G    
Sbjct  243  KEEWKFDTLCDLYDTLTITQAVIFCNSRRKVDWLTEKMRE------ANFTVTSMHG----  292

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 M Q+++  ++Q F+ G   +L+ T +   G+D+   ++V+ Y L  N  + +   
Sbjct  293  ----EMPQKERDAIMQDFRQGNSRVLICTDIWARGIDVQQVSLVINYDLPANRENYIHRI  348

Query  470  GR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKM  513
            GR  R  +   A    T     + R+ I +   T++++    +  M
Sbjct  349  GRSGRFGRKGVAINFVTNEDVRILRD-IEQYYSTVIDEMPMNIGDM  393


 Score = 41.7 bits (96),  Expect = 0.020, Method: Composition-based stats.
 Identities = 16/120 (13%), Positives = 39/120 (33%), Gaps = 6/120 (5%)

Query  16   EGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGR  74
            +G+++I    +G GKT   +  + +    +V   + ++L     L  Q       + D  
Sbjct  57   KGRDVIAQAQSGTGKTATFSIGILQSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHM  116

Query  75   WTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC  133
                    G          L     ++  T   +   +       ++      ++++DE 
Sbjct  117  NVQCHACIGGTSVGNDIKKLDYGQHVVSGTPGRVTDMI----RRRNLRTRNVKMLILDEA  172


>sp|A4R8G3|DBP8_PYRO7 ATP-dependent RNA helicase DBP8 OS=Pyricularia 
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 
GN=DBP8 PE=3 SV=3
Length=579

 Score = 112 bits (280),  Expect = 1e-24, Method: Composition-based stats.
 Identities = 55/242 (23%), Positives = 95/242 (39%), Gaps = 26/242 (11%)

Query  305  ALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSS  364
            AL++   R       +   + ++LA+ D  K     L     E+     L + L    ++
Sbjct  347  ALKEMPTRPGKEPVHVCEVDTQVLAIPDSLKQSYIQLTVTHREH----FLHEFLLT--AA  400

Query  365  SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI  424
            +     IIF     +A                      L+    +S  + + Q+ + + +
Sbjct  401  NTERSIIIFVNRTSTAQ--------------FLHHLLRLLDHRVTSLHSKLRQQQRIDNL  446

Query  425  QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVA  483
             +F+     +LVAT VA  GLDIP  +VVV Y L  +    +   GR ARA +   A   
Sbjct  447  GRFRASAARILVATDVASRGLDIPEVSVVVNYDLPRDPDDYIHRVGRTARAGRKGEAVNF  506

Query  484  TEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD-LQQAALTKRAAQAAQREN  542
              G R+++  L   A+E  + + +   ++         IRD L+  +  KR A     EN
Sbjct  507  V-GQRDVELVL---AIEKRVGRPMEKWEEEGVNLETRVIRDSLKLVSEKKREALLNIEEN  562

Query  543  QR  544
            + 
Sbjct  563  RE  564


 Score = 52.9 bits (125),  Expect = 7e-06, Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 2/123 (2%)

Query  15   LEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDG  73
            L+G++ I    TG+GKT A A  + +++ +       VVL     L  Q  E+F+ +   
Sbjct  183  LKGRDCIGGSRTGSGKTIAFAVPILQKYAQDPSAIFAVVLTATRELALQIYEQFKAVSSP  242

Query  74   RW-TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDE  132
                   + G    R+    LA+   ++I T   L   + S  E+    L     +V+DE
Sbjct  243  HVLKAALIIGGSDMRSQAIALAQRPSIVIATPGRLADHIRSSGEDTICGLRRVKFLVLDE  302

Query  133  CHH  135
               
Sbjct  303  ADR  305


>sp|A6S4N4|FAL1_BOTFB ATP-dependent RNA helicase fal1 OS=Botryotinia 
fuckeliana (strain B05.10) OX=332648 GN=fal1 PE=3 SV=1
Length=399

 Score = 110 bits (275),  Expect = 1e-24, Method: Composition-based stats.
 Identities = 29/147 (20%), Positives = 58/147 (39%), Gaps = 16/147 (11%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K +     L   + +    + +IF  TR+    L   +++                   S
Sbjct  247  KEDWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREAN--------------FTVS  292

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
            S    M Q+++  ++Q F+ G   +L++T V   G+D+   ++V+ Y L  N  + +   
Sbjct  293  SMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPVNRENYIHRI  352

Query  470  GR-ARADQSVYAF-VATEGSRELKREL  494
            GR  R  +   A    T     + R++
Sbjct  353  GRSGRFGRKGVAINFVTSEDVRILRDI  379


 Score = 42.9 bits (99),  Expect = 0.008, Method: Composition-based stats.
 Identities = 20/120 (17%), Positives = 40/120 (33%), Gaps = 6/120 (5%)

Query  16   EGKNIIIWLPTGAGKTRAAAYVAKRHLET-VDGAKVVVLVNRVHLVTQHGEEFRRMLDGR  74
            +G++ I    +G GKT   +    + ++T V   + +VL     L TQ       + D  
Sbjct  61   KGRDTIAQAQSGTGKTATFSISMLQVIDTAVRETQALVLSPTRELATQIQSVVMALGDYM  120

Query  75   WTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC  133
                    G          L     ++  T   +   +       ++      ++V+DE 
Sbjct  121  NVQCHACIGGTNVGEDIRKLDYGQHIVSGTPGRVADMI----RRRNLRTRHIKMLVLDEA  176


>sp|Q7SEL0|PRP28_NEUCR Pre-mRNA-splicing ATP-dependent RNA helicase 
prp-28 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A 
/ CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=prp-28 
PE=3 SV=1
Length=728

 Score = 113 bits (282),  Expect = 1e-24, Method: Composition-based stats.
 Identities = 68/400 (17%), Positives = 137/400 (34%), Gaps = 80/400 (20%)

Query  137  HKDTVYNVIM---SQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLD  193
              D  Y +I+    + ++     A+     LG T     GG S  + A         N  
Sbjct  366  KNDGPYALILAPTRELVQQIESEAKKFATPLGFTVVSIVGGHSLEEQAFAL-----RNGA  420

Query  194  TWCIMSPQ---NCCPQLQEHSQQPCKQYNLCHRRSQDP-FGDLLKKLMDQI--------H  241
               + +P    +C  +      Q C        R  D  F + L K++D +         
Sbjct  421  EIIVATPGRLVDCLERRLLVFSQCCYTIMDEADRMIDQGFEEPLTKILDAMPVTNEKPDT  480

Query  242  DHLEMPELSRKF--GTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRA  299
            D  E P+L  ++  G   Y Q ++  +    +     +R+   +LRR             
Sbjct  481  DDAENPQLMSRYVDGKDRYRQTMMYTATMPPIV----ERIAKKYLRR-------------  523

Query  300  VDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQ  359
                                +   E+R              +     E+ + + L++IL 
Sbjct  524  --------PAIVTIGNAGEAVDTVEQR--------------VEFVSGEDKRKKRLQEILN  561

Query  360  RQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRD  419
               S    P  I+F   +++   +   ++               +G    +     TQ  
Sbjct  562  ---SGQFKPPIIVFVNIKRNCDMVARDIKG--------------MGYSAVTLHGSKTQEQ  604

Query  420  QQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSV  478
            ++  +   ++G  ++LVAT +A  G+D+P  ++VV + + TN  S     GR  RA +S 
Sbjct  605  REAALASLRNGQTDILVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIGRTGRAGKSG  664

Query  479  YAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQAE  517
             A         ++  +L     ++ + +    +++ + A+
Sbjct  665  VAITFLGPEDNDVLYDLRQIISKSSISKVPDELRRHEAAQ  704


 Score = 59.0 bits (141),  Expect = 1e-07, Method: Composition-based stats.
 Identities = 39/187 (21%), Positives = 64/187 (34%), Gaps = 31/187 (17%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT---------RAAAYVAKRHLETVDGAKVVVLVNRV  57
            Q   I  AL+ +++I    TG+GKT           +           DG   ++L    
Sbjct  320  QRAAIPIALQARDLIGVAVTGSGKTAAFLLPLLVYISELPPLTEYNKNDGPYALILAPTR  379

Query  58   HLVTQHGEEFRRM-LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE  116
             LV Q   E ++      +TV ++ G          L    ++++ T   L   L     
Sbjct  380  ELVQQIESEAKKFATPLGFTVVSIVGGHSLEEQAFALRNGAEIIVATPGRLVDCLERR--  437

Query  117  EEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGAS  176
                      L+V  +C +T  D    +I   +        +PL ++L   A P T    
Sbjct  438  ----------LLVFSQCCYTIMDEADRMIDQGF-------EEPLTKILD--AMPVTNEKP  478

Query  177  KLDGAIN  183
              D A N
Sbjct  479  DTDDAEN  485


>sp|Q10I26|IF43B_ORYSJ Eukaryotic initiation factor 4A-III homolog 
B OS=Oryza sativa subsp. japonica OX=39947 GN=EIF4A3B PE=1 
SV=1
Length=404

 Score = 110 bits (275),  Expect = 1e-24, Method: Composition-based stats.
 Identities = 29/165 (18%), Positives = 59/165 (36%), Gaps = 15/165 (9%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K E     L   + +    + +IF  T++    L   ++                    S
Sbjct  253  KEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTERMRSNN--------------FTVS  298

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
            +    M Q+++  ++ +F+ G   +L+ T V   GLD+   ++V+ Y L  N    +   
Sbjct  299  AMHGDMPQKERDAIMGEFRSGATRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRI  358

Query  470  GR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM  513
            GR  R  +   A    +         I +   T +++    V  +
Sbjct  359  GRSGRFGRKGVAINFVKKEDIRILRDIEQYYSTQIDEMPMNVADL  403


 Score = 47.9 bits (112),  Expect = 3e-04, Method: Composition-based stats.
 Identities = 19/131 (15%), Positives = 47/131 (36%), Gaps = 10/131 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT-RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q   ++P + G+++I    +G GKT   +  V +     V   + ++L     L  Q   
Sbjct  58   QQRAVLPIISGRDVIAQAQSGTGKTSMISLSVCQIVDTAVREVQALILSPTRELAAQTER  117

Query  66   EFRRMLDGRWTVTTLSGDMGPRAGFGHLAR---CHDLLICTAELLQMALTSPEEEEHVEL  122
                + D  +    +   +G ++    + +      ++  T   +   +        +  
Sbjct  118  VMLAIGD--YINIQVHACIGGKSIGEDIRKLEHGVHVVSGTPGRVCDMIKRRT----LRT  171

Query  123  TVFSLIVVDEC  133
                L+++DE 
Sbjct  172  RAIKLLILDEA  182


>sp|Q5VNM3|IF43A_ORYSJ Eukaryotic initiation factor 4A-III homolog 
A OS=Oryza sativa subsp. japonica OX=39947 GN=EIF4A3A PE=1 
SV=1
Length=404

 Score = 110 bits (275),  Expect = 1e-24, Method: Composition-based stats.
 Identities = 29/165 (18%), Positives = 59/165 (36%), Gaps = 15/165 (9%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K E     L   + +    + +IF  T++    L   ++                    S
Sbjct  253  KEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTERMRSNN--------------FTVS  298

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
            +    M Q+++  ++ +F+ G   +L+ T V   GLD+   ++V+ Y L  N    +   
Sbjct  299  AMHGDMPQKERDAIMGEFRSGATRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRI  358

Query  470  GR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM  513
            GR  R  +   A    +         I +   T +++    V  +
Sbjct  359  GRSGRFGRKGVAINFVKKEDIRILRDIEQYYSTQIDEMPMNVADL  403


 Score = 47.1 bits (110),  Expect = 4e-04, Method: Composition-based stats.
 Identities = 20/129 (16%), Positives = 41/129 (32%), Gaps = 6/129 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT-RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q   ++P + G+++I    +G GKT   +  V +     V   + ++L     L  Q   
Sbjct  58   QQRAVLPIISGRDVIAQAQSGTGKTSMISLSVCQIVDTAVREVQALILSPTRELAAQTER  117

Query  66   EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
                + D          G          L     ++  T   +   +        +    
Sbjct  118  VMLAIGDFINIQVHACIGGKSIGEDIRKLEHGVHVVSGTPGRVCDMIKRRT----LRTRA  173

Query  125  FSLIVVDEC  133
              L+++DE 
Sbjct  174  IKLLILDEA  182


>sp|P41380|IF4A3_NICPL Eukaryotic initiation factor 4A-3 OS=Nicotiana 
plumbaginifolia OX=4092 PE=2 SV=1
Length=391

 Score = 110 bits (274),  Expect = 1e-24, Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 64/166 (39%), Gaps = 17/166 (10%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K E     L   + +    + +IF  T++    L   +++                   S
Sbjct  240  KEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTSKMRENN--------------FTVS  285

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
            S    M Q+++  ++ +F+ GT  +L+ T V   GLD+   ++V+ Y L  N    +   
Sbjct  286  SMHGDMPQKERDAIMAEFRGGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRI  345

Query  470  GR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKM  513
            GR  R  +   A         ++ R+ I +   T +++    V  +
Sbjct  346  GRSGRFGRKGVAINFVKSDDIKILRD-IEQYYSTQIDEMPMNVADL  390


 Score = 51.7 bits (122),  Expect = 1e-05, Method: Composition-based stats.
 Identities = 20/128 (16%), Positives = 41/128 (32%), Gaps = 6/128 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT-RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q   ++P + G+++I    +G GKT   A  V +         + ++L     L  Q  +
Sbjct  45   QQRAVLPIISGRDVIAQAQSGTGKTSMIALTVCQIVDTKSSEVQALILSPTRELAAQTEK  104

Query  66   EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
                + D          G          L     ++  T   +   +        +    
Sbjct  105  VILAIGDYINVQAHACIGGKSVGEDIRKLEHGVQVVSGTPGRVCDMIKRRT----LRTRG  160

Query  125  FSLIVVDE  132
              L+++DE
Sbjct  161  IKLLILDE  168


>sp|P41382|IF410_TOBAC Eukaryotic initiation factor 4A-10 OS=Nicotiana 
tabacum OX=4097 PE=2 SV=1
Length=413

 Score = 110 bits (275),  Expect = 1e-24, Method: Composition-based stats.
 Identities = 36/201 (18%), Positives = 75/201 (37%), Gaps = 20/201 (10%)

Query  315  VTKTQILCAERRLLALFDDRKNELAHLATH-GPENPKLEMLEKILQRQFSSSNSPRGIIF  373
            +T+  +    R L+   D     +     +   E  KLE L  +    + +    + +IF
Sbjct  230  ITRKFMNKPVRILVKRDDVTLEGIKQFYVNVDKEEWKLETLCDL----YETLAITQSVIF  285

Query  374  TRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN  433
              TR+    L   ++ +                  S+    M Q  +  ++++F+ G+  
Sbjct  286  VNTRRKVDWLTDKMRSRD--------------HTVSATHGDMDQNTRDIIMREFRSGSSR  331

Query  434  LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKR  492
            +L+ T +   G+D+   ++V+ Y L T   + +   GR  R  +   A        E   
Sbjct  332  VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERML  391

Query  493  ELINEALETLMEQAVAAVQKM  513
              I +    ++E+  A V  +
Sbjct  392  SDIQKFYNVVIEELPANVADL  412


>sp|Q91VN6|DDX41_MOUSE Probable ATP-dependent RNA helicase DDX41 
OS=Mus musculus OX=10090 GN=Ddx41 PE=1 SV=2
Length=622

 Score = 112 bits (281),  Expect = 1e-24, Method: Composition-based stats.
 Identities = 52/310 (17%), Positives = 109/310 (35%), Gaps = 30/310 (10%)

Query  206  QLQEHSQQPCKQYNLCHRRSQDPF--------GDLLKKLMDQIHDHLEMPELSRKFGTQM  257
            +L   +    + Y    +    P         G  +K+ M+ I   + M   +      +
Sbjct  268  ELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDL  327

Query  258  YEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTK  317
             ++++V L     LA  +  R+  +        +  +   +    L +       ++  K
Sbjct  328  LQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAK  387

Query  318  TQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTR  377
            + ++      +        ++     +  E  K+  L + LQ+       P  +IF   +
Sbjct  388  SALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQK-----TPPPVLIFAEKK  442

Query  378  QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA  437
                ++  +L              LL G    +      Q ++ + I+ F++G  ++LVA
Sbjct  443  ADVDAIHEYL--------------LLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVA  488

Query  438  TSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYA--FVATEGSRELKREL  494
            T VA +GLD P    V+ Y +     + V   GR  R+  +  A  F+       +  +L
Sbjct  489  TDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDL  548

Query  495  INEALETLME  504
                LE   +
Sbjct  549  KALLLEAKQK  558


 Score = 35.9 bits (81),  Expect = 1.4, Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 41/145 (28%), Gaps = 20/145 (14%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA----AAYVAKRHLETVDGAKV-----VVLVNRV  57
            Q + I   L G+++I    TG+GKT               + +  +K      +++    
Sbjct  208  QIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSR  267

Query  58   HLVTQHGEEFRRM-------LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMA  110
             L  Q                          G M  +     +     +++ T   L   
Sbjct  268  ELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDL  327

Query  111  LTSPEEEEHVELTVFSLIVVDECHH  135
            L        V L +   + +DE   
Sbjct  328  LQKKM----VSLDICRYLALDEADR  348


>sp|Q40467|IF414_TOBAC Eukaryotic initiation factor 4A-14 OS=Nicotiana 
tabacum OX=4097 PE=2 SV=1
Length=413

 Score = 110 bits (275),  Expect = 1e-24, Method: Composition-based stats.
 Identities = 36/201 (18%), Positives = 75/201 (37%), Gaps = 20/201 (10%)

Query  315  VTKTQILCAERRLLALFDDRKNELAHLATH-GPENPKLEMLEKILQRQFSSSNSPRGIIF  373
            +T+  +    R L+   D     +     +   E  KLE L  +    + +    + +IF
Sbjct  230  ITRKFMSKPVRILVKRDDVTLEGIKQFYVNVDKEEWKLETLCDL----YETLAITQSVIF  285

Query  374  TRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN  433
              TR+    L   ++ +                  S+    M Q  +  ++++F+ G+  
Sbjct  286  VNTRRKVDWLTDKMRSRD--------------HTVSATHGDMDQNTRDIIMREFRSGSSR  331

Query  434  LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKR  492
            +L+ T +   G+D+   ++V+ Y L T   + +   GR  R  +   A        E   
Sbjct  332  VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERML  391

Query  493  ELINEALETLMEQAVAAVQKM  513
              I +    ++E+  A V  +
Sbjct  392  FDIQKFYNVVIEELPANVADL  412


>sp|Q2UH00|PRP28_ASPOR Pre-mRNA-splicing ATP-dependent RNA helicase 
prp28 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) 
OX=510516 GN=prp28 PE=3 SV=1
Length=803

 Score = 113 bits (282),  Expect = 1e-24, Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 75/182 (41%), Gaps = 19/182 (10%)

Query  338  LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD  397
               +     E+ + + L  IL    S    P  I+F   +++  ++   ++Q        
Sbjct  616  EQRVEFIAGEDKRKKRLGDILS---SGEFRPPIIVFVNIKRNCDAIAREIKQW-------  665

Query  398  IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG  457
                   G  + +     TQ  ++  +   ++G  ++LVAT +A  G+D+P  ++V+ + 
Sbjct  666  -------GFSSVTLHGSKTQEQREAALASVRNGQTDVLVATDLAGRGIDVPDVSLVINFN  718

Query  458  LLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQ  515
            + T   S     GR  RA +S  A         ++  +L    +++ + +    ++K + 
Sbjct  719  MATTIESYTHRIGRTGRAGKSGVAITFLGNEDTDVMYDLKQMIMKSSISRLPEELRKHEA  778

Query  516  AE  517
            A+
Sbjct  779  AQ  780


 Score = 57.9 bits (138),  Expect = 3e-07, Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 75/234 (32%), Gaps = 39/234 (17%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT---------RAAAYVAKRHLETV--DGAKVVVLVN  55
            Q   I  A++ +++I    TG+GKT           A        E    DG   +VL  
Sbjct  394  QRAAIPIAMQSRDLIGVAVTGSGKTASFLLPLLVYIAELPRIDEFEWRKNDGPYAIVLAP  453

Query  56   RVHLVTQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP  114
               L  Q   E ++  +   + V ++ G          L    +++I T   L   +   
Sbjct  454  TRELAQQIEIEAKKFTEPLGFNVVSIVGGHSFEEQAYSLRNGAEIIIATPGRLVDCI---  510

Query  115  EEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGG  174
             E   + L+    +++DE                   + L   +P+ ++L   A P +  
Sbjct  511  -ERRMLVLSQCCYVIMDEADR---------------MIDLGFEEPVNKILD--ALPVSNE  552

Query  175  ASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
                + A N +        +  I +       +   +  P     +  +  + P
Sbjct  553  KPDSEEAENSMAM------SQHIGTKDRYRQTMMYTATMPTAVERIARKYLRRP  600


>sp|Q9UJV9|DDX41_HUMAN Probable ATP-dependent RNA helicase DDX41 
OS=Homo sapiens OX=9606 GN=DDX41 PE=1 SV=2
Length=622

 Score = 112 bits (280),  Expect = 1e-24, Method: Composition-based stats.
 Identities = 52/310 (17%), Positives = 109/310 (35%), Gaps = 30/310 (10%)

Query  206  QLQEHSQQPCKQYNLCHRRSQDPF--------GDLLKKLMDQIHDHLEMPELSRKFGTQM  257
            +L   +    + Y    +    P         G  +K+ M+ I   + M   +      +
Sbjct  268  ELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDL  327

Query  258  YEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTK  317
             ++++V L     LA  +  R+  +        +  +   +    L +       ++  K
Sbjct  328  LQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAK  387

Query  318  TQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTR  377
            + ++      +        ++     +  E  K+  L + LQ+       P  +IF   +
Sbjct  388  SALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQK-----TPPPVLIFAEKK  442

Query  378  QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA  437
                ++  +L              LL G    +      Q ++ + I+ F++G  ++LVA
Sbjct  443  ADVDAIHEYL--------------LLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVA  488

Query  438  TSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYA--FVATEGSRELKREL  494
            T VA +GLD P    V+ Y +     + V   GR  R+  +  A  F+       +  +L
Sbjct  489  TDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDL  548

Query  495  INEALETLME  504
                LE   +
Sbjct  549  KALLLEAKQK  558


 Score = 35.9 bits (81),  Expect = 1.5, Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 41/145 (28%), Gaps = 20/145 (14%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA----AAYVAKRHLETVDGAKV-----VVLVNRV  57
            Q + I   L G+++I    TG+GKT               + +  +K      +++    
Sbjct  208  QIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSR  267

Query  58   HLVTQHGEEFRRM-------LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMA  110
             L  Q                          G M  +     +     +++ T   L   
Sbjct  268  ELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDL  327

Query  111  LTSPEEEEHVELTVFSLIVVDECHH  135
            L        V L +   + +DE   
Sbjct  328  LQKKM----VSLDICRYLALDEADR  348


>sp|Q0CLX0|PRP28_ASPTN Pre-mRNA-splicing ATP-dependent RNA helicase 
prp28 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) 
OX=341663 GN=prp28 PE=3 SV=1
Length=783

 Score = 113 bits (282),  Expect = 1e-24, Method: Composition-based stats.
 Identities = 34/182 (19%), Positives = 77/182 (42%), Gaps = 19/182 (10%)

Query  338  LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD  397
               +     E+ + + L  IL    S    P  I+F   +++  ++   ++Q        
Sbjct  596  EQRVELIAGEDKRKKRLGDILS---SGEFRPPIIVFVNIKRNCDAIAREIKQW-------  645

Query  398  IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG  457
                   G  + +     TQ  ++  +   ++G+ ++LVAT +A  G+D+P  ++VV + 
Sbjct  646  -------GFSSVTLHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFN  698

Query  458  LLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQ  515
            + T+  S     GR  RA +S  A         ++  +L    +++ + +    ++K + 
Sbjct  699  MATSIESYTHRIGRTGRAGKSGVAITFLGNEDADVMYDLKQMLIKSPISRVPDELRKHEA  758

Query  516  AE  517
            A+
Sbjct  759  AQ  760


 Score = 58.3 bits (139),  Expect = 2e-07, Method: Composition-based stats.
 Identities = 29/141 (21%), Positives = 50/141 (35%), Gaps = 16/141 (11%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT---------RAAAYVAKRHLETV--DGAKVVVLVN  55
            Q   I  A++ +++I    TG+GKT           A        E    DG   +VL  
Sbjct  370  QRAAIPIAMQSRDLIGVAVTGSGKTAAFLLPLLVYIAELPRIDEFEWRKNDGPYAIVLAP  429

Query  56   RVHLVTQ-HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP  114
               L  Q   E  +  +   +TV ++ G          L    +++I T   L   +   
Sbjct  430  TRELAQQIEIEAKKFTIPLGFTVVSIVGGHSLEEQAYSLRNGAEIIIATPGRLVDCI---  486

Query  115  EEEEHVELTVFSLIVVDECHH  135
             E   + L+    +++DE   
Sbjct  487  -ERRLLVLSQCCYVIMDEADR  506


>sp|P32892|DRS1_YEAST ATP-dependent RNA helicase DRS1 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DRS1 
PE=1 SV=2
Length=752

 Score = 113 bits (282),  Expect = 1e-24, Method: Composition-based stats.
 Identities = 67/394 (17%), Positives = 127/394 (32%), Gaps = 52/394 (13%)

Query  147  SQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNC---  203
             Q  E     +   P + GL AS G    S +  A   +  L  ++    +         
Sbjct  227  KQMYENFNSLSLSRPVLKGL-ASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAF  285

Query  204  -CPQLQEHSQQPCKQ--YNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQ  260
              P ++    +P K     +            +  +  QI   +         G     Q
Sbjct  286  MIPIIERLLYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQ  345

Query  261  QVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQI  320
            Q   L     +      R +  H+R      +    +  +D    + +   ++ + +   
Sbjct  346  QEQMLKSRPDIVIATPGR-FIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMG  404

Query  321  LCAERRLLALFD----DRKNELAHLATHGPEN-----PKLEM------------------  353
            L    R   LF      +   L  L+   P       PK                     
Sbjct  405  LLPSNRQNLLFSATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKP  464

Query  354  -LEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQS  412
             L   L R+   +   R ++F   +++AH L + +               L+G       
Sbjct  465  ALLFNLIRKLDPTGQKRIVVFVARKETAHRLRIIMG--------------LLGMSVGELH  510

Query  413  THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-  471
              +TQ  + + + KF++  + +L+ T +A  GLDIP   VV+ Y +  +    +   GR 
Sbjct  511  GSLTQEQRLDSVNKFKNLEVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRT  570

Query  472  ARADQSVYAFVATEGSRELKRELINEALETLMEQ  505
            ARA +   +     G     R ++  A++++ E 
Sbjct  571  ARAGREGRSVTFV-GESSQDRSIVRAAIKSVEEN  603


 Score = 51.7 bits (122),  Expect = 2e-05, Method: Composition-based stats.
 Identities = 28/128 (22%), Positives = 47/128 (37%), Gaps = 9/128 (7%)

Query  14   ALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA----KVVVLVNRVHLVTQHGEEFRR  69
            AL GK+II    TG+GKT A        L          +V+VL+    L  Q  +  ++
Sbjct  265  ALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAKIASTRVIVLLPTRELAIQVADVGKQ  324

Query  70   MLDGRWTVTT--LSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSL  127
            +      +T     G +  R     L    D++I T       + +        +    +
Sbjct  325  IARFVSGITFGLAVGGLNLRQQEQMLKSRPDIVIATPGRFIDHIRNS---ASFNVDSVEI  381

Query  128  IVVDECHH  135
            +V+DE   
Sbjct  382  LVMDEADR  389


>sp|A7A0P8|DRS1_YEAS7 ATP-dependent RNA helicase DRS1 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=DRS1 PE=3 SV=1
Length=754

 Score = 113 bits (282),  Expect = 1e-24, Method: Composition-based stats.
 Identities = 67/394 (17%), Positives = 127/394 (32%), Gaps = 52/394 (13%)

Query  147  SQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNC---  203
             Q  E     +   P + GL AS G    S +  A   +  L  ++    +         
Sbjct  229  KQMYENFNSLSLSRPVLKGL-ASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAF  287

Query  204  -CPQLQEHSQQPCKQ--YNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQ  260
              P ++    +P K     +            +  +  QI   +         G     Q
Sbjct  288  MIPIIERLLYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQ  347

Query  261  QVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQI  320
            Q   L     +      R +  H+R      +    +  +D    + +   ++ + +   
Sbjct  348  QEQMLKSRPDIVIATPGR-FIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMG  406

Query  321  LCAERRLLALFD----DRKNELAHLATHGPEN-----PKLEM------------------  353
            L    R   LF      +   L  L+   P       PK                     
Sbjct  407  LLPSNRQNLLFSATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKP  466

Query  354  -LEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQS  412
             L   L R+   +   R ++F   +++AH L + +               L+G       
Sbjct  467  ALLFNLIRKLDPTGQKRIVVFVARKETAHRLRIIMG--------------LLGMSVGELH  512

Query  413  THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-  471
              +TQ  + + + KF++  + +L+ T +A  GLDIP   VV+ Y +  +    +   GR 
Sbjct  513  GSLTQEQRLDSVNKFKNLEVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRT  572

Query  472  ARADQSVYAFVATEGSRELKRELINEALETLMEQ  505
            ARA +   +     G     R ++  A++++ E 
Sbjct  573  ARAGREGRSVTFV-GESSQDRSIVRAAIKSVEEN  605


 Score = 51.7 bits (122),  Expect = 2e-05, Method: Composition-based stats.
 Identities = 28/128 (22%), Positives = 47/128 (37%), Gaps = 9/128 (7%)

Query  14   ALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA----KVVVLVNRVHLVTQHGEEFRR  69
            AL GK+II    TG+GKT A        L          +V+VL+    L  Q  +  ++
Sbjct  267  ALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAKIASTRVIVLLPTRELAIQVADVGKQ  326

Query  70   MLDGRWTVTT--LSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSL  127
            +      +T     G +  R     L    D++I T       + +        +    +
Sbjct  327  IARFVSGITFGLAVGGLNLRQQEQMLKSRPDIVIATPGRFIDHIRNS---ASFNVDSVEI  383

Query  128  IVVDECHH  135
            +V+DE   
Sbjct  384  LVMDEADR  391


>sp|Q5R7D1|DDX42_PONAB ATP-dependent RNA helicase DDX42 OS=Pongo 
abelii OX=9601 GN=DDX42 PE=2 SV=1
Length=942

 Score = 113 bits (282),  Expect = 1e-24, Method: Composition-based stats.
 Identities = 53/276 (19%), Positives = 95/276 (34%), Gaps = 49/276 (18%)

Query  253  FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRY-----NDALLIHDTVRAVDALAALQ  307
            +G     +Q   L E A +      R+     ++         L+  +  R  D      
Sbjct  361  YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDM-----  415

Query  308  DFYHREHVTKTQILCAERRLL--ALFDDRKNELAHLATHGPE----------NPKLEMLE  355
             F ++     + +    + LL  A F  +  +LA      P           N  +  + 
Sbjct  416  GFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIV  475

Query  356  KIL-----------QRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI  404
            +IL           +R    ++S   ++F   + +A  L   L+Q+              
Sbjct  476  EILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQE--------------  521

Query  405  GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
            G         M Q ++ +VI  F+   + +LVAT VA  GLDIP    V+ Y +  +  +
Sbjct  522  GHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDT  581

Query  465  MVQARGR-ARADQSVYAF-VATEGSRELKRELINEA  498
                 GR  RA +   A+ + T        +L+   
Sbjct  582  HTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNL  617


 Score = 61.0 bits (146),  Expect = 3e-08, Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 52/138 (38%), Gaps = 15/138 (11%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT--RAAAYVA----KRHLETVDGAKVVVLVNRVHLV  60
            Q + +  AL G+++I    TG+GKT       +     ++ LE  DG   V++     L 
Sbjct  280  QCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELC  339

Query  61   TQHGEE---FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE  117
             Q   E   F +  + R       G M  +A    L    ++++CT   L   +      
Sbjct  340  QQIHAEGKRFGKAYNLRSVAVYGGGSMWEQA--KALQEGAEIVVCTPGRLIDHVKKKATN  397

Query  118  EHVELTVFSLIVVDECHH  135
                L   S +V DE   
Sbjct  398  ----LQRVSYLVFDEADR  411


>sp|A4RK80|PRP28_PYRO7 Pre-mRNA-splicing ATP-dependent RNA helicase 
PRP28 OS=Pyricularia oryzae (strain 70-15 / ATCC MYA-4617 
/ FGSC 8958) OX=242507 GN=PRP28 PE=3 SV=1
Length=674

 Score = 112 bits (281),  Expect = 1e-24, Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 66/173 (38%), Gaps = 19/173 (11%)

Query  347  ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA  406
            E+ +   L  +L            I+F  T+ +  ++   L+           A  L G 
Sbjct  514  EDERRNKLRAMLNTY---GTGKLVIVFVNTKSNCDAVAKDLKSS------SFSAVTLHG-  563

Query  407  GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV  466
                   + TQ  ++  +Q F+DG  N+LVAT VA  GLDIP  ++V+ + +        
Sbjct  564  -------NKTQDQREAALQSFRDGRTNVLVATDVAARGLDIPDVSLVINFNMAGTIEVYT  616

Query  467  QARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQAE  517
               GR  RA +   A          +   L     ++ M +    ++   +A+
Sbjct  617  HRIGRTGRAGKEGMAITFCGPEDHGVLYHLKQIMSKSQMSKVPPWLKDHPEAQ  669


 Score = 59.4 bits (142),  Expect = 8e-08, Method: Composition-based stats.
 Identities = 33/140 (24%), Positives = 53/140 (38%), Gaps = 15/140 (11%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLE---------TVDGAKVVVLVNRV  57
            Q   I  AL+ +++I    TG+GKT A       ++E           +G   ++L    
Sbjct  284  QRAAIPIALQCRDLIGISKTGSGKTAAFVLPMLSYIEPLPPLNEVTKTEGPYALILAPTR  343

Query  58   HLVTQ-HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCH-DLLICTAELLQMALTSPE  115
             L TQ   E  +      +TV  L G+           R   ++++ T   L   L   E
Sbjct  344  ELATQIQAEVIKFATRMGFTVVCLIGNKRTIEEDAFALRNGAEIIVATPGRLVDCL---E  400

Query  116  EEEHVELTVFSLIVVDECHH  135
                V L+  S +V+DE   
Sbjct  401  RHLLV-LSQCSYVVLDEADR  419


>sp|Q9NR30|DDX21_HUMAN Nucleolar RNA helicase 2 OS=Homo sapiens 
OX=9606 GN=DDX21 PE=1 SV=5
Length=783

 Score = 112 bits (281),  Expect = 1e-24, Method: Composition-based stats.
 Identities = 41/207 (20%), Positives = 80/207 (39%), Gaps = 19/207 (9%)

Query  338  LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD  397
            + HLA       +  ++  +++    S +  R IIF  T++ A  L              
Sbjct  411  VEHLAIKCHWTQRAAVIGDVIRVY--SGHQGRTIIFCETKKEAQELSQ------------  456

Query  398  IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG  457
                  I     S    + Q+ ++  ++ F++G+  +LVAT+VA  GLDIP  ++V++  
Sbjct  457  ---NSAIKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSS  513

Query  458  LLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALE-TLMEQAVAAVQKMDQ  515
               +  S +   GR  RA ++       +   E +   + +          V +  ++ +
Sbjct  514  PPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIK  573

Query  516  AEYQAKIRDLQQAALTKRAAQAAQREN  542
            A  +  IR L     T  +      E 
Sbjct  574  ASSKDAIRLLDSVPPTAISHFKQSAEK  600


 Score = 54.0 bits (128),  Expect = 4e-06, Method: Composition-based stats.
 Identities = 30/133 (23%), Positives = 56/133 (42%), Gaps = 12/133 (9%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKR-HLETVDGAK-----VVVLVNRVHL  59
            Q +       GK++I    TG GKT + A  + ++ H E  D  +     V+VL     L
Sbjct  213  QAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLHGELQDRKRGRAPQVLVLAPTREL  272

Query  60   VTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
              Q  ++F  +   + +V    G       F  +    D+L+ T   ++  + + +    
Sbjct  273  ANQVSKDFSDITK-KLSVACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHIQNGK----  327

Query  120  VELTVFSLIVVDE  132
            ++LT    +V+DE
Sbjct  328  LDLTKLKHVVLDE  340


>sp|Q40468|IF415_TOBAC Eukaryotic initiation factor 4A-15 OS=Nicotiana 
tabacum OX=4097 PE=2 SV=1
Length=413

 Score = 110 bits (274),  Expect = 1e-24, Method: Composition-based stats.
 Identities = 34/201 (17%), Positives = 74/201 (37%), Gaps = 20/201 (10%)

Query  315  VTKTQILCAERRLLALFDDRKNELAHLATH-GPENPKLEMLEKILQRQFSSSNSPRGIIF  373
            +T+  +    R L+   +     +     +   E  KLE L  +    + +    + +IF
Sbjct  230  ITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDL----YETLAITQSVIF  285

Query  374  TRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN  433
              TR+    L   ++ +                  S+    M Q  +  ++++F+ G+  
Sbjct  286  VNTRRKVDWLTDKMRSRD--------------HTVSATHGDMDQNTRDIIMREFRSGSSR  331

Query  434  LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKR  492
            +L+ T +   G+D+   ++V+ + L T   + +   GR  R  +   A        E   
Sbjct  332  VLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERML  391

Query  493  ELINEALETLMEQAVAAVQKM  513
              I      ++E+  A V  +
Sbjct  392  SDIQRFYNVVIEELPANVADL  412


>sp|A6RJA2|PRP28_BOTFB Pre-mRNA-splicing ATP-dependent RNA helicase 
prp28 OS=Botryotinia fuckeliana (strain B05.10) OX=332648 
GN=prp28 PE=3 SV=2
Length=817

 Score = 113 bits (282),  Expect = 1e-24, Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 79/191 (41%), Gaps = 19/191 (10%)

Query  332  DDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQ  391
            +  +     +     E+ + + L +IL    S   +P  I+F   +++  ++   ++   
Sbjct  621  EAVETVEQRVEFVAGEDKRKKRLNEILA---SGEFAPPIIVFVNIKRNCDAVARDIKH--  675

Query  392  GLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN  451
                        +G  + +     TQ  ++  +   + G  N+LVAT +A  G+D+P  +
Sbjct  676  ------------MGFTSVTLHGSKTQEQREAALASVRSGATNVLVATDLAGRGIDVPDVS  723

Query  452  VVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAA  509
            +VV + + TN  S     GR  RA +S  A         +   +L     ++ + +    
Sbjct  724  LVVNFNMATNIESYTHRIGRTGRAGKSGVAITFLGNEDSDTMYDLKQMLTKSSISRVPEE  783

Query  510  VQKMDQAEYQA  520
            ++K + A+ ++
Sbjct  784  LRKHEAAQQKS  794


 Score = 59.8 bits (143),  Expect = 6e-08, Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 47/140 (34%), Gaps = 16/140 (11%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT---------RAAAYVAKRHLETVDGAKVVVLVNRV  57
            Q   I  AL+ +++I    TG+GKT           +           DG   ++L    
Sbjct  407  QRAAIPIALQARDLIGVAVTGSGKTAAFLLPLLVYISELPPLNEFTKNDGPYAIILAPTR  466

Query  58   HLVTQHGEEFRR--MLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE  115
             L  Q  E   +       +T  ++ G         +L    +++I T   L   +    
Sbjct  467  EL-AQQIEVEAKKFATPLGFTCVSIVGGHSLEEQSYNLRNGAEIIIATPGRLVDCI----  521

Query  116  EEEHVELTVFSLIVVDECHH  135
            E   + L     I++DE   
Sbjct  522  ERRVLVLGQCCYIIMDEADR  541


>sp|P41379|IF4A2_NICPL Eukaryotic initiation factor 4A-2 OS=Nicotiana 
plumbaginifolia OX=4092 PE=2 SV=1
Length=413

 Score = 110 bits (274),  Expect = 2e-24, Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 76/201 (38%), Gaps = 20/201 (10%)

Query  315  VTKTQILCAERRLLALFDDRKNELAHLATH-GPENPKLEMLEKILQRQFSSSNSPRGIIF  373
            +T+  +    R L+   +     +     +   E  KLE L  +    + +    + +IF
Sbjct  230  ITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDL----YETLAITQSVIF  285

Query  374  TRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN  433
              TR+    L   ++ +                  S+    M Q  +  ++++F+ G+  
Sbjct  286  VNTRRKVDWLTDKMRSRD--------------HTVSATHGDMDQNTRDIIMREFRSGSSR  331

Query  434  LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKR  492
            +L+ T +   G+D+   ++V+ Y L T   + +   GR  R  +   A  +     E   
Sbjct  332  VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINSVTKDDERML  391

Query  493  ELINEALETLMEQAVAAVQKM  513
              I +    ++E+  A V  +
Sbjct  392  FDIQKFYNVVIEELPANVADL  412


>sp|Q9JIK5|DDX21_MOUSE Nucleolar RNA helicase 2 OS=Mus musculus 
OX=10090 GN=Ddx21 PE=1 SV=3
Length=851

 Score = 112 bits (281),  Expect = 2e-24, Method: Composition-based stats.
 Identities = 42/213 (20%), Positives = 78/213 (37%), Gaps = 19/213 (9%)

Query  332  DDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQ  391
                  + HLA       +  ++  +++    S +  R IIF  T++ A  L        
Sbjct  477  QKAAITVEHLAIKCHWTERAAVIGDVIRVY--SGHQGRTIIFCETKKDAQELSQ------  528

Query  392  GLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN  451
                        I     S    + Q+ ++  ++ F++G   +LVAT+VA  GLDIP  +
Sbjct  529  ---------NTCIKQDAQSLHGDIPQKQREITLKGFRNGNFGVLVATNVAARGLDIPEVD  579

Query  452  VVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAA  509
            +VV+     +  S +   GR  RA ++                ++  +A        V +
Sbjct  580  LVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQNKEEYQLAQVEQKAGIKFKRIGVPS  639

Query  510  VQKMDQAEYQAKIRDLQQAALTKRAAQAAQREN  542
              ++ +A  +  IR L     T  +      E 
Sbjct  640  ATEIIKASSKDAIRLLDSVPPTAISHFKQSAEK  672


 Score = 51.7 bits (122),  Expect = 2e-05, Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 54/133 (41%), Gaps = 12/133 (9%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRH---LETVDGAK---VVVLVNRVHL  59
            Q +       GK++I    TG GKT + A  + ++    L+     +   V+VL     L
Sbjct  285  QAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLQGGLQERKRGRAPQVLVLAPTREL  344

Query  60   VTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
              Q  ++F  +   + +V    G          +    D+L+ T   ++  L + +    
Sbjct  345  ANQVSKDFSDITK-KLSVACFYGGTPYGGQIERMRSGIDILVGTPGRIKDHLQNGK----  399

Query  120  VELTVFSLIVVDE  132
            ++LT    +V+DE
Sbjct  400  LDLTKLKHVVLDE  412


>sp|P23394|PRP28_YEAST Pre-mRNA-splicing ATP-dependent RNA helicase 
PRP28 OS=Saccharomyces cerevisiae (strain ATCC 204508 
/ S288c) OX=559292 GN=PRP28 PE=1 SV=2
Length=588

 Score = 112 bits (279),  Expect = 2e-24, Method: Composition-based stats.
 Identities = 68/401 (17%), Positives = 132/401 (33%), Gaps = 74/401 (18%)

Query  143  NVIMSQYLELKLQRAQ-PLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQ  201
            N+I    L + +Q  + P P       +P           +           T    +  
Sbjct  178  NIIPRDLLRVIIQELRFPSP-------TPIQRITIPNVCNMKQYRDFLGVASTGSGKTLA  230

Query  202  NCCPQLQEHSQQP-----CKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKF---  253
               P L + S+ P      K  +        P  +L++++  +     ++      +   
Sbjct  231  FVIPILIKMSRSPPRPPSLKIIDGPKALILAPTRELVQQIQKETQKVTKIWSKESNYDCK  290

Query  254  -----GTQMYEQQVVKLSEAAALAGLQEQRVYA-----LHLRRYNDALLIHDTVRAVDAL  303
                 G    E+    LSE   +      R+       L + +  + L++ +  + +D  
Sbjct  291  VISIVGGHSLEEISFSLSEGCDILVATPGRLIDSLENHLLVMKQVETLVLDEADKMIDLG  350

Query  304  AALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENP--------------  349
               Q       V         R+ L         +  +A    + P              
Sbjct  351  FEDQVTNILTKVDINADSAVNRQTLMFTATMTPVIEKIAAGYMQKPVYATIGVETGSEPL  410

Query  350  -------------KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTV  396
                         K + L+ I+ +       P  IIF   +Q+A  L    Q++      
Sbjct  411  IQQVVEYADNDEDKFKKLKPIVAKY-----DPPIIIFINYKQTADWLAEKFQKE-----T  460

Query  397  DIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY  456
            +++  +L G+         +Q  ++  +Q F+   + +++AT+VA  GLDIP+ ++VV +
Sbjct  461  NMKVTILHGSK--------SQEQREHSLQLFRTNKVQIMIATNVAARGLDIPNVSLVVNF  512

Query  457  GLLTNEISMVQARGR-ARADQSVYA--FVATEGSRELKREL  494
             +       +   GR  RA     A  FV+      L REL
Sbjct  513  QISKKMDDYIHRIGRTGRAANEGTAVSFVSAAEDESLIREL  553


 Score = 52.9 bits (125),  Expect = 8e-06, Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 46/128 (36%), Gaps = 21/128 (16%)

Query  23   WLPTGAGKTRAAAYVAKRH----------LETVDGAKVVVLVNRVHLVTQHGEEFRRMLD  72
               TG+GKT A                  L+ +DG K ++L     LV Q  +E +++  
Sbjct  220  VASTGSGKTLAFVIPILIKMSRSPPRPPSLKIIDGPKALILAPTRELVQQIQKETQKVTK  279

Query  73   GRW-------TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF  125
                       V ++ G          L+   D+L+ T   L  +L    E   + +   
Sbjct  280  IWSKESNYDCKVISIVGGHSLEEISFSLSEGCDILVATPGRLIDSL----ENHLLVMKQV  335

Query  126  SLIVVDEC  133
              +V+DE 
Sbjct  336  ETLVLDEA  343


>sp|Q7ZY47|DDX42_XENLA ATP-dependent RNA helicase DDX42 OS=Xenopus 
laevis OX=8355 GN=ddx42 PE=2 SV=1
Length=947

 Score = 112 bits (281),  Expect = 2e-24, Method: Composition-based stats.
 Identities = 59/299 (20%), Positives = 99/299 (33%), Gaps = 51/299 (17%)

Query  234  KKLMDQIHDHLE------MPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRY  287
            ++L  QIH   +             +G     +Q   L E A +      R+     ++ 
Sbjct  333  RELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKA  392

Query  288  -----NDALLIHDTVRAVD-------------------ALAALQDFYHREHVTKTQILCA  323
                    L+  +  R  D                    L     F  +       IL  
Sbjct  393  TNLQRVTYLVFDEADRMFDMGFEYQVRSIANHVRPDRQTLLFSATFRKKIEKLARDILVD  452

Query  324  ERRLLALFDDRKNE-LAHLATHGPENP-KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAH  381
              R++       NE +  +    P  P K   L + L      +++   ++F   + +A 
Sbjct  453  PIRVVQGDIGEANEDITQVVEILPSGPEKWTWLTRRLVEF---TSTGSVLVFVTKKANAE  509

Query  382  SLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVA  441
             L   L+Q            LL G         M Q ++ +VI  F+  ++ +LVAT VA
Sbjct  510  ELAANLRQDDHP------LGLLHG--------DMDQSERNKVISDFKKKSIPVLVATDVA  555

Query  442  EEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEA  498
              GLDIP    VV Y +  +  +     GR  RA +   A+ + T        +L+   
Sbjct  556  ARGLDIPSIKTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTSKESNFAGDLVRNL  614


 Score = 59.8 bits (143),  Expect = 6e-08, Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 52/138 (38%), Gaps = 15/138 (11%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTR-----AAAYVA-KRHLETVDGAKVVVLVNRVHLV  60
            Q + I  AL G+++I    TG+GKT         ++  ++ L+  DG   V++     L 
Sbjct  277  QCQGIPVALSGRDMIGIAKTGSGKTAAFIWPILVHIMDQKELQPADGPIAVIVCPTRELC  336

Query  61   TQHGEEFRRMLDG---RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE  117
             Q   E +R       R       G M  +A    L    ++++CT   L   +      
Sbjct  337  QQIHSECKRFGKAYNLRSVAVYGGGSMWEQA--KALQEGAEIVVCTPGRLIDHVKKKATN  394

Query  118  EHVELTVFSLIVVDECHH  135
                L   + +V DE   
Sbjct  395  ----LQRVTYLVFDEADR  408


>sp|A5AA68|DBP8_ASPNC ATP-dependent RNA helicase dbp8 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=dbp8 PE=3 SV=1
Length=522

 Score = 111 bits (277),  Expect = 2e-24, Method: Composition-based stats.
 Identities = 44/195 (23%), Positives = 78/195 (40%), Gaps = 22/195 (11%)

Query  352  EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ  411
            E    +L    ++++ P  IIF    ++A  L   L++                   +S 
Sbjct  333  EAFLHVLLSTEANASKP-AIIFCNHTKTADLLERMLRRLS--------------HRVTSL  377

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
             + + Q ++   + +F+     LLVAT VA  GLDIP   +VV + +  N    V   GR
Sbjct  378  HSLLPQSERNANLARFRASAARLLVATDVASRGLDIPSVELVVNFDVPRNPDDYVHRVGR  437

Query  472  -ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD--LQQA  528
             ARA +   +     G R++   L   A+E  + + +    +   +     +R   L++ 
Sbjct  438  TARAGRKGESVTLV-GQRDVSLVL---AIEERVGRQMEEWSEEGVSVEGRVVRTGVLKEV  493

Query  529  ALTKRAAQAAQRENQ  543
               KR A     E +
Sbjct  494  GEAKREAAGEIEEGR  508


 Score = 52.9 bits (125),  Expect = 8e-06, Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 44/113 (39%), Gaps = 4/113 (4%)

Query  26   TGAGKTRAAAYV--AKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTVTTL-SG  82
            TG+GKT  A  V   ++  E   G   +VL     L  Q  E+ + +   +     L +G
Sbjct  138  TGSGKT-IAFSVPMLQKWAEDPFGIFGLVLTPTRELALQIYEQIKAISAPQSMKPLLITG  196

Query  83   DMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH  135
                R     LA+   ++I T   L   + +   +    L    ++V+DE   
Sbjct  197  GTDMRPQAVALAQRPHVVIATPGRLADHINTSGSDTIRGLKRVRMVVLDEADR  249


>sp|Q4P9P3|DRS1_USTMA ATP-dependent RNA helicase DRS1 OS=Ustilago 
maydis (strain 521 / FGSC 9021) OX=237631 GN=DRS1 PE=3 SV=1
Length=932

 Score = 112 bits (281),  Expect = 2e-24, Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 81/199 (41%), Gaps = 17/199 (9%)

Query  357  ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT  416
            +L    + + + + +IF R+++ AH L +                 L+G         ++
Sbjct  601  LLLSLCTRTFTSQTMIFVRSKKLAHQLKIVFG--------------LLGLSAGELHGDLS  646

Query  417  QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARAD  475
            Q  + + +  F+DG  + L+AT +A  GLDI     V+ Y +     + +   GR ARA 
Sbjct  647  QEQRIDALTDFRDGKTDFLLATDLASRGLDIKGVQTVINYDMPGQFEAYLHRVGRTARAG  706

Query  476  QSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQA-EYQAKIRDLQQAALTKR  533
            ++  A  +  E  R + +  I ++    ++  +          E   +++    A L + 
Sbjct  707  RNGRAVTLVGEADRRMLKLAIKKSSAEQIKHRIIPSAVAAHMCETLERLKPEVDAVLREE  766

Query  534  AAQAAQRENQRQQFPVEHV  552
              + A R  + +    E++
Sbjct  767  KEEKALRIAEMELKKGENM  785


 Score = 56.3 bits (134),  Expect = 7e-07, Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 52/141 (37%), Gaps = 18/141 (13%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYV-AKRHLET--------VDGAKVVVLVNRV  57
            Q   I  AL GK+I+    TG+GKT AA  +     L             ++V++L    
Sbjct  360  QSRTIPIALAGKDIVAGAVTGSGKT-AAFMIPTIERLTWRAKTRTPHEAKSRVLILAPTR  418

Query  58   HLVTQHGEE---FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP  114
             L  Q         +  D R+ +    G +  ++    L    +++I T   L   + + 
Sbjct  419  ELAIQCYSVGKSIAKFTDIRFCLCV--GGLSVKSQEAELKLRPEVVIATPGRLIDHVRNS  476

Query  115  EEEEHVELTVFSLIVVDECHH  135
                   L    ++V+DE   
Sbjct  477  ---ASFTLDDIEILVMDEADR  494


>sp|Q7ZVA6|IF4A3_DANRE Eukaryotic initiation factor 4A-III OS=Danio 
rerio OX=7955 GN=eif4a3 PE=2 SV=1
Length=406

 Score = 109 bits (273),  Expect = 2e-24, Method: Composition-based stats.
 Identities = 28/165 (17%), Positives = 64/165 (39%), Gaps = 19/165 (12%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K + L  +    + +    + +IF  T++    L   +++                   S
Sbjct  259  KFDTLCDL----YDTLTITQAVIFCNTKRKVDWLTEKMREAN--------------FTVS  300

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
            S    M Q++++ ++++F+ G   +L++T V   GLD+   ++++ Y L  N    +   
Sbjct  301  SMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVSQVSLIINYDLPNNRELYIHRI  360

Query  470  GR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM  513
            GR  R  +   A    +         I +   T +++    V  +
Sbjct  361  GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADL  405


 Score = 44.8 bits (104),  Expect = 0.002, Method: Composition-based stats.
 Identities = 19/131 (15%), Positives = 39/131 (30%), Gaps = 10/131 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTR---AAAYVAKRHLETVDGAKVVVLVNRVHLVTQH  63
            Q   I   ++G+++I    +G GKT     +          V   + ++L     L  Q 
Sbjct  60   QQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDI--QVRETQALILAPTRELAGQI  117

Query  64   GEEFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
             +    + D          G          L     ++  T   +   +        +  
Sbjct  118  QKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMI----RRRSLRT  173

Query  123  TVFSLIVVDEC  133
                ++V+DE 
Sbjct  174  RAIKMLVLDEA  184


>sp|A4QYM6|DRS1_PYRO7 ATP-dependent RNA helicase DRS1 OS=Pyricularia 
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 
GN=DRS1 PE=3 SV=1
Length=790

 Score = 112 bits (280),  Expect = 2e-24, Method: Composition-based stats.
 Identities = 44/200 (22%), Positives = 83/200 (42%), Gaps = 20/200 (10%)

Query  343  THGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL  402
              G E  ++  L  + +  ++     R IIF R ++ AH   +                 
Sbjct  480  RPGREEKRMGYLVYLCKNLYTE----RVIIFFRQKKIAHHARIIFG--------------  521

Query  403  LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE  462
            L+G   +     M+Q  + + ++ F+DG ++ L+AT +A  GLDI   + V+ Y    + 
Sbjct  522  LLGLSCAELHGSMSQIQRIQSVEAFRDGKVSFLLATDLASRGLDIKGVDTVINYEAPQSL  581

Query  463  ISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA  520
               V   GR ARA +S  A  +A E  R++ +  +        + +   +   D   +QA
Sbjct  582  EIYVHRVGRTARAGRSGTAITLAAEPDRKVVKAAVKAGKAQGAKISSRIIDAADADSWQA  641

Query  521  KIRDLQQAALTKRAAQAAQR  540
            KI +L+         +  ++
Sbjct  642  KIDELEDEVEAVMREEKEEK  661


 Score = 58.3 bits (139),  Expect = 2e-07, Method: Composition-based stats.
 Identities = 36/214 (17%), Positives = 77/214 (36%), Gaps = 17/214 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHL----ETVDGAKVVVLVNRVHLVTQ  62
            Q + I  AL GK+++    TG+GKT A        L    + V  ++VV+L     L  Q
Sbjct  282  QSKTIPIALMGKDVVGGAVTGSGKTAAFVVPILERLLYRPKKVPTSRVVILAPTRELAIQ  341

Query  63   HGEE---FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
                        D ++ +    G +  +     L    D++I T       + +      
Sbjct  342  CHAVATKLASHTDIKFCLAV--GGLSLKVQESELRLRPDVIIATPGRFIDHMRNS---AS  396

Query  120  VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLD  179
              +    ++V+DE     +D   + +      L   R   L      +A+  +   + + 
Sbjct  397  FAVDTVEILVLDEADRMLEDGFADELNEILTTLPKSRQTML-----FSATMTSSVDNLIR  451

Query  180  GAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQ  213
              +N  ++L  +     +++      +L+   ++
Sbjct  452  VGLNKPVRLMVDSQKKTVVTLTQEFVRLRPGREE  485


>sp|A3LQW7|DBP2_PICST ATP-dependent RNA helicase DBP2 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=DBP2 PE=3 SV=1
Length=530

 Score = 111 bits (277),  Expect = 2e-24, Method: Composition-based stats.
 Identities = 51/302 (17%), Positives = 100/302 (33%), Gaps = 52/302 (17%)

Query  253  FGTQMYEQQVVKLSEAAALAGLQEQRVY------ALHLRRYNDALLIHDTVRAVDALAAL  306
            +G     QQ+  L+    +      R+         +L+R    L++ +  R +D     
Sbjct  205  YGGAPKGQQIRDLARGVEIVIATPGRLIDMLEMGKTNLKR-VTYLVLDEADRMLDMGFEP  263

Query  307  QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGP--------------------  346
            Q    R+ V + +         A +      LA      P                    
Sbjct  264  Q---IRKIVDQIRPDRQTLMWSATWPKEVQNLARDYLQDPIQVRIGSLELAASHTITQVV  320

Query  347  ----ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL  402
                E  K + L K L    ++    + +IF  T+++   +  +L+              
Sbjct  321  EVISEYEKRDRLVKHL-ETATTEKESKVLIFASTKKTCDEVTSYLRAD------------  367

Query  403  LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE  462
              G    +      Q ++  V+++F+ G   ++VAT VA  G+D+   N V+ + +  N 
Sbjct  368  --GWPALAIHGDKQQSERDWVLREFKTGKSPIMVATDVAARGIDVKGINFVINFDMPGNI  425

Query  463  ISMVQAR--GRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA  520
               V                   T+G+ +L  +L     E   +     +Q+ D+  + A
Sbjct  426  EDYVHRIGRTGRGGATGTAVSFFTDGNNKLGGDLCKIMREA-KQTIPPELQRFDRKSFGA  484

Query  521  KI  522
             I
Sbjct  485  HI  486


 Score = 56.3 bits (134),  Expect = 6e-07, Method: Composition-based stats.
 Identities = 63/347 (18%), Positives = 120/347 (35%), Gaps = 44/347 (13%)

Query  14   ALEGKNIIIWLPTGAGKTRA----AAYVA--KRHLETVDGAKVVVLVNRVHLVTQHGEEF  67
            AL G++++    TG+GKT +    A      +  L   DG  V+VL     L  Q  +E 
Sbjct  131  ALSGRDMVGIAATGSGKTLSYCLPAIVHINAQPLLSPGDGPVVLVLAPTRELAVQIQQEC  190

Query  68   RRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS  126
             +     R   T + G          LAR  +++I T   L   L    E     L   +
Sbjct  191  SKFGSSSRIRNTCVYGGAPKGQQIRDLARGVEIVIATPGRLIDML----EMGKTNLKRVT  246

Query  127  LIVVDECHHTHKDTVYNVIMSQYLELKLQR----AQPLPQVLGLTAS-PGTGGASKLDGA  181
             +V+DE          + ++    E ++++     +P  Q L  +A+ P        D  
Sbjct  247  YLVLDEA---------DRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVQNLARDYL  297

Query  182  INHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIH  241
             + +     +L+     +       + E+ ++     +L    ++     L+     +  
Sbjct  298  QDPIQVRIGSLELAASHTITQVVEVISEYEKRDRLVKHLETATTEKESKVLIFASTKKTC  357

Query  242  DHLEMPELSRKFGT----------QMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDAL  291
            D  E+    R  G           Q     V++  +      +    V A  +       
Sbjct  358  D--EVTSYLRADGWPALAIHGDKQQSERDWVLREFKTGKSPIMVATDVAARGIDVKGINF  415

Query  292  LIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNEL  338
            +I+      D    ++D+ HR  + +T    A    ++ F D  N+L
Sbjct  416  VIN-----FDMPGNIEDYVHR--IGRTGRGGATGTAVSFFTDGNNKL  455


>sp|A2QIL2|PRP28_ASPNC Pre-mRNA-splicing ATP-dependent RNA helicase 
prp28 OS=Aspergillus niger (strain ATCC MYA-4892 / CBS 
513.88 / FGSC A1513) OX=425011 GN=prp28 PE=3 SV=1
Length=810

 Score = 112 bits (280),  Expect = 2e-24, Method: Composition-based stats.
 Identities = 34/182 (19%), Positives = 76/182 (42%), Gaps = 19/182 (10%)

Query  338  LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD  397
               +     E+ + + L  IL    S       I+F   +++  ++   ++Q        
Sbjct  622  EQRVEMIAGEDKRKKRLGDILS---SGEFRAPIIVFVNIKRNCDAIAREIKQW-------  671

Query  398  IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG  457
                   G  + +     TQ  ++  +   ++GT ++LVAT +A  G+D+P  ++VV + 
Sbjct  672  -------GFSSVTLHGSKTQDQREAALASVRNGTTDVLVATDLAGRGIDVPDVSLVVNFN  724

Query  458  LLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQ  515
            + T+  S     GR  RA +S  A         ++  +L    +++ + +    ++K + 
Sbjct  725  MATSIESYTHRIGRTGRAGKSGVAITFLGNEDADVMYDLKQMLMKSPISRVPEELRKHEA  784

Query  516  AE  517
            A+
Sbjct  785  AQ  786


 Score = 60.2 bits (144),  Expect = 4e-08, Method: Composition-based stats.
 Identities = 46/311 (15%), Positives = 101/311 (32%), Gaps = 47/311 (15%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT---------RAAAYVAKRHLETV--DGAKVVVLVN  55
            Q   I  A++ +++I    TG+GKT           A        E    DG   +VL  
Sbjct  399  QRAAIPIAMQNRDLIGVAVTGSGKTAAFLLPLLCYIAELPRIDEFEWRKADGPYAIVLAP  458

Query  56   RVHLVTQHGEEFRRMLDGR--WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTS  113
               L  Q  E   +   G   + V ++ G          L    +++I T   L   +  
Sbjct  459  TREL-AQQIEIEAKKFTGPLGFNVVSIVGGHSLEEQAYSLRDGAEIIIATPGRLVDCI--  515

Query  114  PEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTG  173
              E   + L+    +++DE                   + L   +P+ ++L   A P + 
Sbjct  516  --ERRILVLSQCCYVIMDEADR---------------MIDLGFEEPVNKILD--ALPVSN  556

Query  174  GASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHS-QQPCKQYNLCHRRSQDPFGDL  232
                 + A N +        +  I   Q+   Q   ++   P     +  +  + P    
Sbjct  557  EKPDSEDAENPLAM------SRHINHDQHRYRQTMMYTATMPTAVERIARKYLRRPAIVT  610

Query  233  LKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALL  292
            +    + +    +  E+         +++  +L +  +    +   +  ++++R  DA+ 
Sbjct  611  IGSAGEAVDTVEQRVEMIA-----GEDKRKKRLGDILSSGEFRAPIIVFVNIKRNCDAIA  665

Query  293  IHDTVRAVDAL  303
                     ++
Sbjct  666  REIKQWGFSSV  676


>sp|P54509|YQHH_BACSU Uncharacterized ATP-dependent helicase YqhH 
OS=Bacillus subtilis (strain 168) OX=224308 GN=yqhH PE=3 
SV=1
Length=557

 Score = 111 bits (277),  Expect = 2e-24, Method: Composition-based stats.
 Identities = 80/475 (17%), Positives = 164/475 (35%), Gaps = 83/475 (17%)

Query  5    SYQWEVIMPALEGKNI--IIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ  62
             +Q EV    +E  N   I+    G GKT  A  + K ++      K+++LV    LV+Q
Sbjct  62   PHQLEVAQKVVEKMNGKAILADEVGLGKTVEAGLILKEYMIRGLAKKILILVP-ASLVSQ  120

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
              +E +                       ++    D+++ + +  +         E V  
Sbjct  121  WVKELQEKFLIP----------AVEQKKSYVWEQCDIVVSSIDTAK----RSPHREIVLS  166

Query  123  TVFSLIVVDECHHT----HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKL  178
              + L+++DE H       K+        +++   +++       L LTA+P       +
Sbjct  167  IPYDLVIIDEAHKLKNSKTKNY-------EFVRNLVKKYC-----LLLTATP-------I  207

Query  179  DGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMD  238
               I  +  L + L    + S  +   +  +               + +   DL+ K+M 
Sbjct  208  QNRIEEIFNLVSLLKPGHLGSQNHFQEEFAK---------KKSSLEAHEHLKDLVNKVMI  258

Query  239  QIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVR  298
            +   H                    +  E   +     ++     + R  D++    ++ 
Sbjct  259  RNRRHDTGLN------------WKQRHVETVPIQFSPSEQALYDEISRLKDSINKPASMF  306

Query  299  AVDAL--AALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEK  356
            ++  L               K  +   E++  A+ +D  + L        +N K   +  
Sbjct  307  SIMTLQRECCSSREAVYMTLKKMLDQKEKQAPAIDEDTISVLIDRINQVTQNSKALQVVD  366

Query  357  ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT  416
            ++++        + IIFT  R +    L W  QQ G+ +V  R     G  +  +     
Sbjct  367  LIKKI-----DDKVIIFTEYRAT-QIYLQWFLQQNGISSVPFRGGFKRGKKDWMK-----  415

Query  417  QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
                      F+ G + +L+AT    EG+++  CN ++ Y L  N + + Q  GR
Sbjct  416  --------DLFR-GKIQVLIATEAGGEGINLQFCNHMINYDLPWNPMRLEQRIGR  461


>sp|Q3B8Q1|DDX21_RAT Nucleolar RNA helicase 2 OS=Rattus norvegicus 
OX=10116 GN=Ddx21 PE=2 SV=1
Length=782

 Score = 112 bits (279),  Expect = 2e-24, Method: Composition-based stats.
 Identities = 43/213 (20%), Positives = 80/213 (38%), Gaps = 19/213 (9%)

Query  332  DDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQ  391
                  + HLA       +  ++  +++    S +  R IIF  T++ A  L        
Sbjct  401  QKAAITVEHLAIKCHWTERAAVIGDVIRVY--SGHQGRTIIFCETKKDAQELSQ------  452

Query  392  GLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN  451
                        I     S    + Q+ ++  ++ F++G   +LVAT+VA  GLDIP  +
Sbjct  453  ---------NTCIKQDAQSLHGDIPQKQREITLKGFRNGNFGVLVATNVAARGLDIPEVD  503

Query  452  VVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELK-RELINEALETLMEQAVAA  509
            +VV+     +  S +   GR  RA ++       +   E +  ++  +A        V +
Sbjct  504  LVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLAQVEQKAGIKFKRIGVPS  563

Query  510  VQKMDQAEYQAKIRDLQQAALTKRAAQAAQREN  542
              ++ +A  +  IR L     T         E 
Sbjct  564  ATEIIKASSKDAIRLLDSVPPTAIGHFKQSAEK  596


 Score = 51.3 bits (121),  Expect = 2e-05, Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 54/133 (41%), Gaps = 12/133 (9%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRH---LETVDGAK---VVVLVNRVHL  59
            Q +       GK++I    TG GKT + A  + ++    L+     +   V+VL     L
Sbjct  209  QAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLQGGLQERKRGRAPQVLVLAPTREL  268

Query  60   VTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
              Q  ++F  +   + +V    G          +    D+L+ T   ++  L + +    
Sbjct  269  ANQVSKDFSDITK-KLSVACFYGGTPYGGQIERMRSGIDILVGTPGRIKDHLQNGK----  323

Query  120  VELTVFSLIVVDE  132
            ++LT    +V+DE
Sbjct  324  LDLTKLKHVVLDE  336


>sp|Q40471|IF4A9_TOBAC Eukaryotic initiation factor 4A-9 OS=Nicotiana 
tabacum OX=4097 PE=2 SV=1
Length=413

 Score = 109 bits (272),  Expect = 2e-24, Method: Composition-based stats.
 Identities = 34/201 (17%), Positives = 74/201 (37%), Gaps = 20/201 (10%)

Query  315  VTKTQILCAERRLLALFDDRKNELAHLATH-GPENPKLEMLEKILQRQFSSSNSPRGIIF  373
            +T+  +    R L+   +     +     +   E  KLE L  +    + +    + +IF
Sbjct  230  ITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDL----YETLAITQSVIF  285

Query  374  TRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN  433
              TR+    L   ++ +                  S+    M Q  +  ++++F+ G+  
Sbjct  286  VNTRRKVDWLTDKMRSRD--------------HTVSATHGDMDQNTRDIIMREFRSGSSR  331

Query  434  LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKR  492
            +L+ T +   G+D+   ++V+ Y L T   + +   GR  R  +   +        E   
Sbjct  332  VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVSINFVTSDDERML  391

Query  493  ELINEALETLMEQAVAAVQKM  513
              I      ++E+  A V  +
Sbjct  392  SDIQRFYNVVIEELPANVADL  412


>sp|Q7FGZ2|RH1_ARATH DEAD-box ATP-dependent RNA helicase 1 OS=Arabidopsis 
thaliana OX=3702 GN=RH1 PE=2 SV=3
Length=522

 Score = 111 bits (276),  Expect = 3e-24, Method: Composition-based stats.
 Identities = 66/401 (16%), Positives = 121/401 (30%), Gaps = 55/401 (14%)

Query  174  GASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLL  233
            G S + G I+ +++    LD      P +    L+                  +  G  L
Sbjct  140  GQSSIAGEISQLIKT-PKLDAGICYDPDDLSQNLESAVDILVATPGRLMDHINNTKGFTL  198

Query  234  KKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLI  293
            + L   + D       + +   + Y+  +  + +    +      ++         A   
Sbjct  199  EHLRYLVVD------ETDRLLREAYQSWLPTVLQLTQTSD---DSLFPSFTPFVPSAFGS  249

Query  294  HDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPEN-----  348
              TVR        +    R    K      +  L A      ++L  L  H P       
Sbjct  250  LQTVR--------RQSVERGFKGKPYPRLVKMVLSATLTQDPSKLIQLDLHHPLFMTTGG  301

Query  349  ------PKLEMLEKI---------LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGL  393
                   KLE L  I         L     S    + IIFT + ++   L   L      
Sbjct  302  SRYRLPEKLECLRLICETGMKPVYLVALLKSWEGEKCIIFTSSVETTRRLCKLLN---FF  358

Query  394  QTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV  453
                I+A+   G         + Q  + + ++ F+ G + +LVA+     G+D+     V
Sbjct  359  GDPKIKAKEYSG--------GLNQSLRSKELKAFRKGDIQVLVASDALTRGMDVKGVTNV  410

Query  454  VRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQK  512
            + Y +     + +   GR ARA Q+   F         +    ++ LE +   +      
Sbjct  411  INYDMPPFAKTFIHRAGRTARAGQAGRCFTLLSN---HEVRRFSKLLEKVGSDSCPIYPI  467

Query  513  MDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQ  553
               +     IR     AL K          ++ +    H  
Sbjct  468  PPTS--LDSIRATYTPALEKLKELVESEAPKKGRQAFRHNS  506


 Score = 45.9 bits (107),  Expect = 0.001, Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 49/137 (36%), Gaps = 27/137 (20%)

Query  20   IIIWLPTGAGKTRAAAYVAKRHLETVDGA--KVVVLVNRVHLVTQHGEEFRRMLDG----  73
            I +  PTG+GKT + A    + L +      + +V++    L  Q  + F  +       
Sbjct  75   ICVNSPTGSGKTLSYALPIVQLLASRPVRCLRALVVLPTRDLALQVKDVFDAIAPAVGLS  134

Query  74   ---RWTVTTLSGDMG---------------PRAGFGHLARCHDLLICTAELLQMALTSPE  115
                   ++++G++                P     +L    D+L+ T   L   + + +
Sbjct  135  VGSAVGQSSIAGEISQLIKTPKLDAGICYDPDDLSQNLESAVDILVATPGRLMDHINNTK  194

Query  116  EEEHVELTVFSLIVVDE  132
                  L     +VVDE
Sbjct  195  G---FTLEHLRYLVVDE  208


>sp|Q40470|IF4A7_TOBAC Eukaryotic initiation factor 4A-7 OS=Nicotiana 
tabacum OX=4097 PE=2 SV=1
Length=413

 Score = 109 bits (272),  Expect = 3e-24, Method: Composition-based stats.
 Identities = 36/201 (18%), Positives = 74/201 (37%), Gaps = 20/201 (10%)

Query  315  VTKTQILCAERRLLALFDDRKNELAHLATH-GPENPKLEMLEKILQRQFSSSNSPRGIIF  373
            +T+  +    R L+   D     +     +   E  KLE L  +    + +    + +IF
Sbjct  230  ITRKFMNKPVRILVKRDDVTLEGIKQFYVNVDKEEWKLETLCDL----YETLAITQSVIF  285

Query  374  TRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN  433
              TR+    L   ++ +                  S+    M Q  +  ++++F+ G+  
Sbjct  286  VNTRRKVDWLTDKMRTRD--------------HTVSATHGDMDQNTRDIIMREFRSGSSR  331

Query  434  LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKR  492
            +L+ T +   G+D+   ++V+ Y L T   + +   GR  R  +   A        E   
Sbjct  332  VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVIKDDERML  391

Query  493  ELINEALETLMEQAVAAVQKM  513
              I      ++E+  A V  +
Sbjct  392  SDIQRFYNVVIEELPANVADL  412


>sp|Q55D61|IF4A_DICDI Eukaryotic initiation factor 4A OS=Dictyostelium 
discoideum OX=44689 GN=tifA PE=3 SV=1
Length=405

 Score = 109 bits (271),  Expect = 3e-24, Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 76/196 (39%), Gaps = 20/196 (10%)

Query  314  HVTKTQILCAERRLLALFDDRKNELA-HLATHGPENPKLEMLEKILQRQFSSSNSPRGII  372
             +T+  +    R LL   +   + +     +   E+ K   L  I    + S    + +I
Sbjct  221  SMTEKFMTKPVRILLKRDELTLDGIKQFFVSVEKEDWKFGTLCDI----YDSLTITQAVI  276

Query  373  FTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTL  432
            F  T++    L       + ++  +     + G         M Q++++E+I+ F+ G  
Sbjct  277  FCNTKKKVDQLT------EQMRDANFTVASMHG--------DMVQKEREEIIKSFRSGEN  322

Query  433  NLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELK  491
             +L+ T +   G+D+   ++V+ Y L  +  + +   GR  R  +   A    + S    
Sbjct  323  RVLITTDILARGIDVQQVSLVINYDLPIDRENYIHRIGRSGRFGRKGVAINFVKNSDIRI  382

Query  492  RELINEALETLMEQAV  507
               I +   T +++  
Sbjct  383  LRDIEQFYSTQIDEMP  398


 Score = 42.9 bits (99),  Expect = 0.008, Method: Composition-based stats.
 Identities = 22/131 (17%), Positives = 40/131 (31%), Gaps = 10/131 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTR---AAAYVAKRHLETVDGAKVVVLVNRVHLVTQ-  62
            Q   I+P ++G++ I    +G GKT      A         V   +V++L     L  Q 
Sbjct  59   QQRAILPIIKGRDTIAQAQSGTGKTATFSIGALQCVEV--NVRSPQVLILSPTRELAQQI  116

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
                          V    G          L     ++  T   +   +T       +  
Sbjct  117  QKVALALSEFMNIQVHACVGGKNLSDDVKKLETGVHIVSGTPGRVLDMITRKS----LPT  172

Query  123  TVFSLIVVDEC  133
                ++++DE 
Sbjct  173  RHIKMMILDEA  183


>sp|Q9VHS8|IF4A3_DROME Eukaryotic initiation factor 4A-III OS=Drosophila 
melanogaster OX=7227 GN=CG7483 PE=1 SV=1
Length=399

 Score = 109 bits (271),  Expect = 3e-24, Method: Composition-based stats.
 Identities = 29/165 (18%), Positives = 63/165 (38%), Gaps = 19/165 (12%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K + L  +    + +    + +IF  T++    L   +++                   S
Sbjct  252  KFDTLCDL----YDTLTITQAVIFCNTKRKVDWLTEKMREAN--------------FTVS  293

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
            S    M Q+++ E++++F+ G   +L+ T V   G+D+   ++V+ Y L  N    +   
Sbjct  294  SMHGDMPQKERDEIMKEFRAGQSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRI  353

Query  470  GR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM  513
            GR  R  +   A    +         I +   T +++    V  +
Sbjct  354  GRSGRFGRKGVAINFVKSDDIRILRDIEQYYSTQIDEMPMNVADL  398


 Score = 42.1 bits (97),  Expect = 0.014, Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 45/129 (35%), Gaps = 6/129 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q   I P ++G+++I    +G GKT   +  + +    T+   +V+ L     L  Q  +
Sbjct  53   QQRSITPIVKGRDVIAQAQSGTGKTATFSISILQSLDTTLRETQVLCLSPTRELAVQIQK  112

Query  66   EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
                + D       +  G          L     ++  T   +   +    +   +    
Sbjct  113  VILALGDMMNVQCHVCIGGTNLGEDIRKLDYGQHIVSGTPGRVFDMI----KRRVLRTRA  168

Query  125  FSLIVVDEC  133
              ++V+DE 
Sbjct  169  IKMLVLDEA  177


>sp|P0C2N8|DRS1_NEUCR ATP-dependent RNA helicase drs1 OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / 
DSM 1257 / FGSC 987) OX=367110 GN=drh-11 PE=3 SV=1
Length=829

 Score = 112 bits (279),  Expect = 3e-24, Method: Composition-based stats.
 Identities = 40/157 (25%), Positives = 67/157 (43%), Gaps = 20/157 (13%)

Query  343  THGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL  402
              G E+ +   L  I +  ++     R IIF R ++ AH + +            +    
Sbjct  518  RPGRESKREGYLLHICKTIYTE----RVIIFFRQKKIAHKMRII------FGLFGLSCAE  567

Query  403  LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE  462
            L G+        M Q  + + ++ F+DG +N L+AT +A  GLDI   + V+ Y      
Sbjct  568  LHGS--------MNQAQRIQSVEDFRDGKVNFLLATDLASRGLDIKGVDTVINYEAPQTP  619

Query  463  ISMVQARGR-ARADQSVYAF-VATEGSRELKRELINE  497
               V   GR ARA +S  A  +A E  R++ +  +  
Sbjct  620  EIYVHRVGRTARAGRSGTAITLAAEPDRKVVKAAVKA  656


 Score = 54.4 bits (129),  Expect = 3e-06, Method: Composition-based stats.
 Identities = 22/117 (19%), Positives = 39/117 (33%), Gaps = 12/117 (10%)

Query  26   TGAGKTRAAAYVAKRHL----ETVDGAKVVVLVNRVHLVTQHGEE---FRRMLDGRWTVT  78
            TG+GKT A        L    + V   +VV+L     L  Q            D ++ + 
Sbjct  339  TGSGKTAAFVVPILERLLYRPKKVPTTRVVILTPTRELAIQCHAVAVKLASHTDIKFCLA  398

Query  79   TLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH  135
               G +  +     L    D++I T       + +        +    ++V+DE   
Sbjct  399  V--GGLSLKVQEAELRLRPDVVIATPGRFIDHMRNS---ASFAVDTIEILVLDEADR  450


>sp|Q9LU46|RH35_ARATH DEAD-box ATP-dependent RNA helicase 35 OS=Arabidopsis 
thaliana OX=3702 GN=RH35 PE=2 SV=1
Length=591

 Score = 111 bits (276),  Expect = 3e-24, Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 68/175 (39%), Gaps = 21/175 (12%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+  L + LQ+      SP  +IF   +     +  +L              LL G    
Sbjct  385  KIVYLLECLQK-----TSPPVLIFCENKADVDDIHEYL--------------LLKGVEAV  425

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
            +      Q D++  I  F+ G  ++LVAT VA +GLD P    V+ Y +     + V   
Sbjct  426  AIHGGKDQEDREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRI  485

Query  470  GR-ARADQSVYAFVATEGSRELKREL-INEALETLMEQAVAAVQKMDQAEYQAKI  522
            GR  R  ++  A      ++     L +   L+   ++    + +++    +A+ 
Sbjct  486  GRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEEAET  540


 Score = 42.9 bits (99),  Expect = 0.009, Method: Composition-based stats.
 Identities = 37/255 (15%), Positives = 72/255 (28%), Gaps = 33/255 (13%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAY--VAKRHLETV---------DGAKVVVLVN  55
            Q + +   L G+++I    TG+GKT       +     E +             +V    
Sbjct  173  QVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIV--CP  230

Query  56   RVHLVTQHGEEFRRMLD-------GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQ  108
               L  Q  E   + +                 G +  R+    + R   +++ T   L+
Sbjct  231  SRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGVHIVVATPGRLK  290

Query  109  MALTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLP-------  161
              L   +    + L     + +DE          + I   +   K QR   L        
Sbjct  291  DMLAKKK----MSLDACRYLTLDEADRLVDLGFEDDIREVFDHFKSQRQTLLFSATMPTK  346

Query  162  -QVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNL  220
             Q+   +A         +  A    L +   ++     +      +  + +  P   +  
Sbjct  347  IQIFARSA-LVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTSPPVLIFCE  405

Query  221  CHRRSQDPFGDLLKK  235
                  D    LL K
Sbjct  406  NKADVDDIHEYLLLK  420


>sp|Q650T9|RH7_ORYSJ DEAD-box ATP-dependent RNA helicase 7 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os09g0520700 PE=2 SV=1
Length=696

 Score = 111 bits (277),  Expect = 4e-24, Method: Composition-based stats.
 Identities = 56/264 (21%), Positives = 100/264 (38%), Gaps = 34/264 (13%)

Query  317  KTQILCAERRLLALFDDRK----NELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGII  372
              + L + ++ + L  D K      + HLA       + +++  I++     S   R II
Sbjct  318  SLRFLKSGKKTVDLVGDEKLKASASVRHLALPCNRAARAQVIPDIIRCY---SRGGRTII  374

Query  373  FTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTL  432
            FT T++SA  L   +                  AG+ +    + Q  ++ ++  F+ G  
Sbjct  375  FTETKESASDLSGLI------------------AGSRALHGDVAQAQREVILAGFRSGKF  416

Query  433  NLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELK  491
             +LVAT+VA  GLDI    ++++     +  + +   GR  RA  +  A +  E   +  
Sbjct  417  LVLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLFEPRYKFN  476

Query  492  RELINEA----LETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQF  547
               I        E +       V +    E    I  +  + +     QA Q  N     
Sbjct  477  VNRIERESGVKFEHISAPQPTDVAQSAGTEAAEAISSVSDSVIPVFREQAEQLLNSSGMS  536

Query  548  PVEHVQLLCINCMVAVGHGSDLRK  571
             V+   LL      AVG+  D++K
Sbjct  537  AVD---LLAKALAKAVGYT-DIKK  556


 Score = 42.9 bits (99),  Expect = 0.011, Method: Composition-based stats.
 Identities = 25/139 (18%), Positives = 47/139 (34%), Gaps = 16/139 (12%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHL--------ETVDGAK---VVVLVN  55
            Q       L+G +++    TG GKT A        L           D  +   V+VL+ 
Sbjct  142  QATTFDLVLDGHDLVGRARTGQGKTLAFVLPILESLVNGTHKASRRTDYGRPPTVLVLLP  201

Query  56   RVHLVTQHGEEFRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP  114
               L  Q   +F         +   + G    R+    + +  D+++ T   ++  +   
Sbjct  202  TRELAKQVHTDFAFYGATFGLSACCVYGGSDYRSQEMAIRKGVDIVVGTPGRVKDFV---  258

Query  115  EEEEHVELTVFSLIVVDEC  133
             E+  +        V+DE 
Sbjct  259  -EKGTLNFRSLKFRVLDEA  276


>sp|Q5F485|DDX42_CHICK ATP-dependent RNA helicase DDX42 OS=Gallus 
gallus OX=9031 GN=DDX42 PE=2 SV=1
Length=944

 Score = 112 bits (279),  Expect = 4e-24, Method: Composition-based stats.
 Identities = 56/299 (19%), Positives = 97/299 (32%), Gaps = 51/299 (17%)

Query  234  KKLMDQIHDHLE------MPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRY  287
            ++L  QIH   +             +G     +Q   L E A +      R+     ++ 
Sbjct  336  RELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKA  395

Query  288  -----NDALLIHDTVRAVD-------------------ALAALQDFYHREHVTKTQILCA  323
                    L+  +  R  D                    L     F  +       IL  
Sbjct  396  TNLQRVTYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILID  455

Query  324  ERRLLALFDDRKNE-LAHLATHGPENP-KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAH  381
              R++       NE +  +    P  P K   L + L      ++S   ++F   + +A 
Sbjct  456  PIRVVQGDIGEANEDVTQIVEIFPSGPSKWNWLTRRLVEF---TSSGSVLLFVTKKANAE  512

Query  382  SLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVA  441
             L   L+Q+                        M Q ++ +VI +F+   + +LVAT VA
Sbjct  513  ELANNLKQED--------------HNLGLLHGDMDQSERNKVISEFKKKGIPILVATDVA  558

Query  442  EEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEA  498
              GLDIP    V+ Y +  +  +     GR  RA +   A+ + T        +L+   
Sbjct  559  ARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNL  617


 Score = 62.5 bits (150),  Expect = 1e-08, Method: Composition-based stats.
 Identities = 30/138 (22%), Positives = 51/138 (37%), Gaps = 15/138 (11%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT--RAAAYVA----KRHLETVDGAKVVVLVNRVHLV  60
            Q + +  A+ G+++I    TG+GKT       +     ++ LE  DG   V++     L 
Sbjct  280  QCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELC  339

Query  61   TQHGEEFRRMLDG---RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE  117
             Q   E +R       R       G M  +A    L    ++++CT   L   +      
Sbjct  340  QQIHSECKRFGKAYNLRSVAVYGGGSMWEQA--KALQEGAEIVVCTPGRLIDHVKKKATN  397

Query  118  EHVELTVFSLIVVDECHH  135
                L   + +V DE   
Sbjct  398  ----LQRVTYLVFDEADR  411


>sp|Q75F95|DRS1_EREGS ATP-dependent RNA helicase DRS1 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=DRS1 PE=3 SV=1
Length=734

 Score = 111 bits (277),  Expect = 5e-24, Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 85/215 (40%), Gaps = 22/215 (10%)

Query  333  DRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQG  392
              K     +     E+ K  +L  +L R+  S+   R ++F   ++ AH L + L     
Sbjct  434  ANKLTQEFVRLRKREHLKPALLYHLL-RKLDSTGQKRIVVFVARKEVAHRLRVILG----  488

Query  393  LQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNV  452
                      L+G         +TQ  + + +  F+   + +LV T +A  GLDIP   V
Sbjct  489  ----------LLGMKAGELHGSLTQEQRLQSVNNFKSLDVPVLVCTDLASRGLDIPKIEV  538

Query  453  VVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETL-----MEQA  506
            V+ Y +       +   GR ARA +   +     G    +R ++ +A++++       +A
Sbjct  539  VINYDMPKTYEIYLHRVGRTARAGREGKSVTLV-GESTQERSIVKDAIKSVDGSKGSGRA  597

Query  507  VAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRE  541
               V    Q E   K+   ++  + +   +  Q +
Sbjct  598  CGRVVDWKQVEEIHKLVQAKEDVIGEILEEEKQEK  632


 Score = 54.4 bits (129),  Expect = 3e-06, Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 47/128 (37%), Gaps = 9/128 (7%)

Query  14   ALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA----KVVVLVNRVHLVTQHGEEFRR  69
            AL GK++I    TG+GKT A        L          +V+VL     L  Q  +  ++
Sbjct  253  ALLGKDVIAGAVTGSGKTAAFMIPIIERLLYKPAKIASTRVLVLTPTRELAIQVADVGKK  312

Query  70   MLDGRWTVTT--LSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSL  127
            +      +T     G +  R     L    D++I T   +   + +        +    +
Sbjct  313  LGKFVSGLTFGLAVGGLNLRQQEQALKLRPDIVIATPGRIIDHIRNS---ASFSVDSVEV  369

Query  128  IVVDECHH  135
            +V+DE   
Sbjct  370  LVIDEADR  377


>sp|Q4PDT1|DBP3_USTMA ATP-dependent RNA helicase DBP3 OS=Ustilago 
maydis (strain 521 / FGSC 9021) OX=237631 GN=DBP3 PE=3 SV=1
Length=585

 Score = 110 bits (275),  Expect = 5e-24, Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 66/184 (36%), Gaps = 22/184 (12%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K   L   L+   +  +  + +IF   ++ A  +   L++               G   S
Sbjct  403  KERRLNDFLRSVNAQRSKDKILIFALYKKEAQRIEQTLRRG--------------GFKVS  448

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q ++   +++F+     LLVAT VA  GLDIP+   VV Y         V   
Sbjct  449  GIHGDLGQNERIASLERFKSAETPLLVATDVAARGLDIPNVEHVVNYTFPLTIEDYVHRI  508

Query  470  GRARADQSVY--AFVATEGSRELKRELI------NEALETLMEQAVAAVQKMDQAEYQAK  521
            GR              TE  +    ELI      ++ +   + +    ++K   + Y   
Sbjct  509  GRTGRGGKTGKSLTFFTEMDKAHAGELIRVLKDADQKVPDALTKFPTTIKKKTHSSYGDH  568

Query  522  IRDL  525
             ++L
Sbjct  569  FKEL  572


 Score = 46.3 bits (108),  Expect = 8e-04, Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 49/138 (36%), Gaps = 22/138 (16%)

Query  15   LEGKNIIIWLPTGAGKTRAAA-------YVAKRHLETVDGAK-------VVVLVNRVHLV  60
            L+ K+++    TG+GKT  A         V K  +      K       V+V+     L 
Sbjct  194  LQNKDVVGIAETGSGKTF-AFGLPALQHLVTKHKVLDSGKKKAKGAQVNVLVIAPTRELA  252

Query  61   TQHGEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARC--HDLLICTAELLQMALTSPEEE  117
             Q  E   ++       +  L G +  +     L +     +++ T   +         +
Sbjct  253  IQTEENMAKLGKSMGIGMICLYGGVSKQEQVRLLNQSPPVRIVVGTPGRVLDM----ARD  308

Query  118  EHVELTVFSLIVVDECHH  135
              ++L+  + +V+DE   
Sbjct  309  GSLDLSGVTYLVLDEADR  326


>sp|Q6C347|FAL1_YARLI ATP-dependent RNA helicase FAL1 OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=FAL1 PE=3 
SV=1
Length=397

 Score = 108 bits (269),  Expect = 5e-24, Method: Composition-based stats.
 Identities = 29/165 (18%), Positives = 60/165 (36%), Gaps = 19/165 (12%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K + L  +    + +    + +IF  T++    L   ++                     
Sbjct  250  KFDTLCDL----YDTLTITQAVIFCNTKKKVDWLTQQMKDNNFTVC--------------  291

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
            S    M Q+D+  ++ +F+ G   +L++T V   G+D+   ++V+ Y L  N  + +   
Sbjct  292  SMHGDMAQKDRDSIMNEFRSGRSRVLISTDVWARGIDVQQVSLVINYDLPPNRENYIHRI  351

Query  470  GR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM  513
            GR  R  +   A              I +   T +++    V  M
Sbjct  352  GRSGRFGRKGVAINFATNDDITTLRDIEQYYSTQIDEMPVNVTDM  396


 Score = 48.6 bits (114),  Expect = 1e-04, Method: Composition-based stats.
 Identities = 20/129 (16%), Positives = 41/129 (32%), Gaps = 6/129 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETV-DGAKVVVLVNRVHLVTQHGE  65
            Q   I   ++G++ I    +G GKT   +      ++T     + +VL     L TQ   
Sbjct  51   QSRAITQIIKGRDTIAQAQSGTGKTATFSISMLEVIDTKHRETQAMVLSPTRELATQIQS  110

Query  66   EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
                + D          G          L     ++  T       +    ++  +    
Sbjct  111  VILALGDYMNVQCHACIGGTSLSVDMKKLEAGQQVVSGTPGRCLDMI----KKGCLRTKN  166

Query  125  FSLIVVDEC  133
              ++++DE 
Sbjct  167  LKMLILDEA  175


>sp|A7TJM9|DRS1_VANPO ATP-dependent RNA helicase DRS1 OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=DRS1 PE=3 SV=1
Length=752

 Score = 111 bits (277),  Expect = 5e-24, Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 85/232 (37%), Gaps = 32/232 (14%)

Query  336  NELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQT  395
             E   +       P    L   L R+   +   R ++F   ++ AH L + L        
Sbjct  451  QEFVRIRKRDHLKP---ALLFYLIRKLDGTGQKRIVVFVARKEMAHKLRIILG-------  500

Query  396  VDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVR  455
                   L+G         +TQ  + + +  F+   + +L+ T +A  GLDIP   VV+ 
Sbjct  501  -------LLGMKVGELHGSLTQEQRLQSVNNFKSLEVPVLICTDLASRGLDIPKIEVVIN  553

Query  456  YGLLTNEISMVQARGR-ARADQSVYAFVA---TEGSRELKRELINEALETLMEQA-----  506
            + +  +    +   GR ARA +   +      +   R + R  I    E+  +       
Sbjct  554  FDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDRSIVRSAIKSVEESSSKNKAVSRN  613

Query  507  -----VAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQ  553
                 +    K+ ++ +   I D+      ++    A+ + ++ +  ++H +
Sbjct  614  VEWTQIEETNKLVES-FGETIDDILVEEKQEKEILRAEMQLRKGENMIKHKK  664


 Score = 53.3 bits (126),  Expect = 6e-06, Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 45/128 (35%), Gaps = 9/128 (7%)

Query  14   ALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA----KVVVLVNRVHLVTQHGEEFRR  69
             L GK+II    TG+GKT A        L          +V+VL     L  Q  +  ++
Sbjct  265  GLSGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAKVASTRVIVLTPTRELAIQIADVGKK  324

Query  70   MLDGRWTVTT--LSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSL  127
            +      +T     G +  R     L    D++I T       + +        +    +
Sbjct  325  IGKYVSGLTFGLAVGGLNLRQQEQELKTRPDIVIATPGRFIDHVRNS---SSFNVDSVEV  381

Query  128  IVVDECHH  135
            +V+DE   
Sbjct  382  LVMDEADR  389


>sp|Q6CJV1|DRS1_KLULA ATP-dependent RNA helicase DRS1 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 
1267 / NRRL Y-1140 / WM37) OX=284590 GN=DRS1 PE=3 SV=1
Length=748

 Score = 111 bits (277),  Expect = 5e-24, Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 69/176 (39%), Gaps = 19/176 (11%)

Query  332  DDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQ  391
            D    E   +       P    L   L R+  +++  R ++F   +++AH L + L    
Sbjct  449  DKLTQEFIRIRKRDHLKP---ALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLG---  502

Query  392  GLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN  451
                       L+G         +TQ  + + +  F+   + +L+ T +A  GLDIP   
Sbjct  503  -----------LLGMQVGELHGSLTQEQRLQSVNNFKSLQVPVLICTDLASRGLDIPKIE  551

Query  452  VVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQA  506
            VV+ + +       +   GR ARA +   +     G     R ++  A+ ++ E A
Sbjct  552  VVINFDMPKTYEIYLHRVGRTARAGREGRSVTFV-GESSQDRSIVRSAIRSVEENA  606


 Score = 55.6 bits (132),  Expect = 1e-06, Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 52/136 (38%), Gaps = 11/136 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAY--VAKRHLET---VDGAKVVVLVNRVHLVT  61
            Q   I  AL GK+II    TG+GKT AA    + +R L     +   +VVVL     L  
Sbjct  260  QSAAIPIALLGKDIIAGAVTGSGKT-AAFMIPIIERLLYKPAHIASTRVVVLTPTRELAI  318

Query  62   QHGEEFRRMLDGRWTVTT--LSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
            Q  +  + +      +T     G +  R     L    D++I T       L +      
Sbjct  319  QVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKTRPDIVIATPGRFIDHLRNS---AS  375

Query  120  VELTVFSLIVVDECHH  135
              +    ++V+DE   
Sbjct  376  FSVDSVEILVIDEADR  391


>sp|Q9CAI7|IF4A3_ARATH Eukaryotic initiation factor 4A-3 OS=Arabidopsis 
thaliana OX=3702 GN=TIF4A-3 PE=1 SV=1
Length=414

 Score = 108 bits (270),  Expect = 5e-24, Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 74/201 (37%), Gaps = 20/201 (10%)

Query  315  VTKTQILCAERRLLALFDDRKNELAHLATH-GPENPKLEMLEKILQRQFSSSNSPRGIIF  373
            +T+  +    R L+   +     +     +   E  KLE L  +    + +    + +IF
Sbjct  231  ITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDL----YETLAITQSVIF  286

Query  374  TRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN  433
              TR+    L   ++ +                  S+    M Q  +  ++++F+ G+  
Sbjct  287  VNTRRKVDWLTDKMRSRD--------------HTVSATHGDMDQNTRDIIMREFRSGSSR  332

Query  434  LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKR  492
            +L+ T +   G+D+   ++V+ + L T   + +   GR  R  +   A        E   
Sbjct  333  VLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFMTSEDERMM  392

Query  493  ELINEALETLMEQAVAAVQKM  513
              I      ++E+  + V  +
Sbjct  393  ADIQRFYNVVVEELPSNVADL  413


>sp|Q6BTL5|DRS1_DEBHA ATP-dependent RNA helicase DRS1 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / 
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DRS1 PE=3 SV=1
Length=771

 Score = 111 bits (277),  Expect = 5e-24, Method: Composition-based stats.
 Identities = 42/240 (18%), Positives = 87/240 (36%), Gaps = 22/240 (9%)

Query  335  KNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQ  394
              E   +       P    L   L +    S   R ++F   ++SAH L + L       
Sbjct  478  VQEFVRIRKRDHLKP---ALLFQLIKSVDPSQQNRIVVFVARKESAHKLRIILG------  528

Query  395  TVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV  454
                    L+G   S     +TQ  +   +  F++ T+ +L+ T +A  GLDIP   +V+
Sbjct  529  --------LLGMRVSELHGSLTQEQRLASVNDFKNLTVPVLICTDLAARGLDIPKIEIVI  580

Query  455  RYGLLTNEISMVQARGR-ARADQSVYAFVA---TEGSRELKRELINEALETLMEQAVAAV  510
             Y +       +   GR ARA +   +      +   R + ++ I    E     +    
Sbjct  581  NYDMPKTHEIYLHRVGRTARAGREGKSITFVGESTQDRAIVKDAIKSISEEQARNSKQGK  640

Query  511  QKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQLLCINCMVAVGHGSDLR  570
                  +++  + +L +   +K        + ++Q   + H ++        + H  +++
Sbjct  641  AVSRNVDWKE-VEELNKIVESKATVIEEVLDEEKQAKEMLHAEMELSKATNMIKHEKEIQ  699


 Score = 55.2 bits (131),  Expect = 2e-06, Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 46/128 (36%), Gaps = 9/128 (7%)

Query  14   ALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA----KVVVLVNRVHLVTQHGEEFRR  69
            AL GK+I+    TG+GKT A        L          +V+VL     L  Q  +  ++
Sbjct  292  ALLGKDIVAGAVTGSGKTAAYMIPIIERLLYKPAKISSTRVIVLAPTRELAIQVCDVGKK  351

Query  70   MLDGRWTV--TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSL  127
            +      +      G +  R     L    D++I T   L   + +        +    +
Sbjct  352  IGQFVNNLNFGLAVGGLNLRQQEQQLKTRPDIVIATPGRLIDHIRNSPS---FSIDSLEV  408

Query  128  IVVDECHH  135
            +V+DE   
Sbjct  409  LVIDEADR  416


>sp|A1CHL3|PRP28_ASPCL Pre-mRNA-splicing ATP-dependent RNA helicase 
prp28 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 
513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 
GN=prp28 PE=3 SV=1
Length=798

 Score = 111 bits (276),  Expect = 6e-24, Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 77/182 (42%), Gaps = 19/182 (10%)

Query  338  LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD  397
               +     E+ + + L  IL    S    P  I+F   +++  ++   ++         
Sbjct  610  EQRVELIAGEDKRKKRLADILS---SGEFRPPIIVFVNIKRNCDAIAREIKH--------  658

Query  398  IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG  457
                  +G  + +     TQ  ++  +   ++G+ ++LVAT +A  G+D+P  ++VV + 
Sbjct  659  ------MGFSSVTLHGSKTQDQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFN  712

Query  458  LLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQ  515
            + T+  S     GR  RA +S  A         ++  +L    +++ + +    ++K + 
Sbjct  713  MATSIESYTHRIGRTGRAGKSGVAITFLGNEDADVMYDLKQMLMKSPISRVPEELRKHEA  772

Query  516  AE  517
            A+
Sbjct  773  AQ  774


 Score = 59.0 bits (141),  Expect = 1e-07, Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 48/142 (34%), Gaps = 18/142 (13%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT---------RAAAYVAKRHLETV--DGAKVVVLVN  55
            Q   I  AL+ +++I    TG+GKT           A        E    DG   +VL  
Sbjct  393  QRAAIPIALQSRDLIGVAVTGSGKTASFLLPLLVYIAELPRIDEFEWRKNDGPYAIVLAP  452

Query  56   RVHLVTQHGEEFRRMLDGR--WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTS  113
               L  Q  E   +       + V ++ G          L    +++I T   L   +  
Sbjct  453  TREL-AQQIEIEAKKFTQPLGFNVVSIVGGHSLEEQAYSLRNGAEIIIATPGRLVDCI--  509

Query  114  PEEEEHVELTVFSLIVVDECHH  135
              E   + L+    I++DE   
Sbjct  510  --ERRILVLSQCCYIIMDEADR  529


>sp|Q09903|DRS1_SCHPO ATP-dependent RNA helicase drs1 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=drs1 
PE=3 SV=1
Length=754

 Score = 111 bits (276),  Expect = 6e-24, Method: Composition-based stats.
 Identities = 42/191 (22%), Positives = 76/191 (40%), Gaps = 20/191 (10%)

Query  353  MLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQS  412
            ML  + +  F      R IIF R++  AH + +                 L+    +   
Sbjct  494  MLIYLCKELFHR----RTIIFFRSKAFAHKMRVIFG--------------LLSLNATEIH  535

Query  413  THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-  471
              ++Q  +   ++ F+DG  N L+AT VA  G+DI    VV+ Y         +   GR 
Sbjct  536  GSLSQEQRVRALEDFRDGKCNYLLATDVASRGIDIKGIEVVINYEAPATHEVYLHRVGRT  595

Query  472  ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAAL  530
            ARA +S  A  +A EG R++ + +   +     +     +      ++  +I +L+    
Sbjct  596  ARAGRSGRAITLAGEGDRKVLKGVFKNSSAQNTKLVNRNLDFNKVEKFGKEIEELEPVVQ  655

Query  531  TKRAAQAAQRE  541
                 +  +RE
Sbjct  656  KVLDEEKQERE  666


 Score = 57.9 bits (138),  Expect = 3e-07, Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 91/270 (34%), Gaps = 29/270 (11%)

Query  14   ALEGKNIIIWLPTGAGKTRAAAYVAKRHL----ETVDGAKVVVLVNRVHLVTQHGEEFRR  69
            AL GK+I+    TG+GKT A        L    + V   +V++L     L  Q      +
Sbjct  293  ALLGKDIVGAAVTGSGKTAAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQCHSVATK  352

Query  70   MLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLI  128
            +      +  L  G +  +     L +  D++I T       + +    +   +    ++
Sbjct  353  IASFTDIMVCLCIGGLSLKLQEQELRKRPDIVIATPGRFIDHMRNS---QGFTVENIEIM  409

Query  129  VVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAIN-----  183
            V+DE     +D       +  L   +Q      Q +  +A+        +  ++N     
Sbjct  410  VMDEADRMLEDG-----FADELNEIIQACPKSRQTMLFSATMTDKVDDLIRLSLNRPVRV  464

Query  184  --HVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLC----HRRSQDPFGDLLKKLM  237
                 +  A L T   +  +     L     +P     LC    HRR+   F        
Sbjct  465  FVDNKKTTAKLLTQEFVRVRPQRELL-----RPAMLIYLCKELFHRRTIIFFRSKAFAHK  519

Query  238  DQIHDHLEMPELSRKFGTQMYEQQVVKLSE  267
             ++   L     +   G+   EQ+V  L +
Sbjct  520  MRVIFGLLSLNATEIHGSLSQEQRVRALED  549


>sp|Q921N6|DDX27_MOUSE Probable ATP-dependent RNA helicase DDX27 
OS=Mus musculus OX=10090 GN=Ddx27 PE=1 SV=3
Length=760

 Score = 111 bits (276),  Expect = 6e-24, Method: Composition-based stats.
 Identities = 57/295 (19%), Positives = 120/295 (41%), Gaps = 52/295 (18%)

Query  289  DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFD----DRKNELAHLATH  344
            + L++ +  R +D        Y  E + +   +C+  R   LF     D   +LA ++  
Sbjct  332  EVLILDEADRMLDE-------YFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLK  384

Query  345  GPENPKLE-------MLEKILQRQFSSSNSPR---------------GIIFTRTRQSAHS  382
             P    +         L +   R   +    R                ++FT+T++ AH 
Sbjct  385  NPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHR  444

Query  383  LLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAE  442
            +         L  + ++   L G        +++Q  + E +++F+D  +++LVAT VA 
Sbjct  445  M------HILLGLLGLQVGELHG--------NLSQTQRLEALRRFKDEQIDILVATDVAA  490

Query  443  EGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALE  500
             GLDI     V+ + +       V   GR ARA ++  +  +  E  R++ +E++  A  
Sbjct  491  RGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKAAKA  550

Query  501  TLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQLL  555
             +  + +     +   +++ KI  L++        +A ++E Q+ +  ++  Q L
Sbjct  551  PVKARILPQDVIL---KFRDKIEKLEKDVYAVLQLEAEEKEMQQSEAQIDTAQRL  602


 Score = 58.3 bits (139),  Expect = 2e-07, Method: Composition-based stats.
 Identities = 51/282 (18%), Positives = 98/282 (35%), Gaps = 26/282 (9%)

Query  14   ALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA----KVVVLVNRVHLVTQHGEEFRR  69
             L GK+I     TG GKT A A      L          +V+VLV    L  Q     ++
Sbjct  218  GLLGKDICACAATGTGKTAAFALPVLERLIYKPRQAAVTRVLVLVPTRELGIQVHSVTKQ  277

Query  70   MLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLI  128
            +       T L+ G +  ++    L    D+LI T   L   L +        L+   ++
Sbjct  278  LAQFCSITTCLAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPS---FHLSSIEVL  334

Query  129  VVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQL  188
            ++DE      +  +   M + + +     Q +      +A+           ++ + +++
Sbjct  335  ILDEADRMLDEY-FEEQMKEIIRMCSHHRQTML----FSATMTDEVKDLASVSLKNPVRI  389

Query  189  CANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPE  248
              N +T      +    +++ +             R  D    +   LM    DH+ +  
Sbjct  390  FVNSNTDVAPFLRQEFIRIRPN-------------REGDREAIVAALLMRTFTDHVMLFT  436

Query  249  LSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDA  290
             ++K   +M+    +   +   L G   Q      LRR+ D 
Sbjct  437  QTKKQAHRMHILLGLLGLQVGELHGNLSQTQRLEALRRFKDE  478


>sp|A5E6W6|RRP3_LODEL ATP-dependent rRNA helicase RRP3 OS=Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=RRP3 PE=3 SV=1
Length=504

 Score = 109 bits (272),  Expect = 6e-24, Method: Composition-based stats.
 Identities = 62/315 (20%), Positives = 105/315 (33%), Gaps = 30/315 (10%)

Query  236  LMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHD  295
            LM + H  +  P    +    +   +   L +   L   +  R+  L   +  D +L   
Sbjct  213  LMRKPHVIIATPG---RLIDHLEHTKGFSLKKLQYLVMDEVDRMIDLDYAKAIDQILKQI  269

Query  296  TVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLE  355
                                 K  +    +  +   +   ++L         N K   L 
Sbjct  270  PSHQRITYLYTATMSREIEKFKRSLNSPVQVEIVKLEKVPDKLKQTMCLTSPNTKDTRLI  329

Query  356  KILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHM  415
            +I+    +  +  R IIFTRT        L L        +  +   L G         M
Sbjct  330  QIV----NLDSMKRVIIFTRTVVHTRRCCLMLLN------LGFKCVELHGQ--------M  371

Query  416  TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA  474
             Q  +   I KF+ GT  +LVAT VA  GLDIP  ++V+ Y +  +    +   GR ARA
Sbjct  372  PQSRRLGAINKFKAGT-PILVATDVAARGLDIPAVDLVINYDIP-DPTLYIHRVGRTARA  429

Query  475  DQSVYAF-VATEGSRELKRELINEA-----LETLMEQAVAAVQKMDQAEYQAKIRDLQQA  528
             ++  A  + T+   E    + N        E L    +  +Q          I+ L+  
Sbjct  430  GKAGKAISLVTQYDLESYLRIENTLGTKLPKEDLPLDEMQGLQVSVDRALSKAIQMLRNE  489

Query  529  ALTKRAAQAAQRENQ  543
                +     +  N+
Sbjct  490  ENDNKLRHRGRSNNK  504


 Score = 52.5 bits (124),  Expect = 1e-05, Method: Composition-based stats.
 Identities = 47/229 (21%), Positives = 75/229 (33%), Gaps = 17/229 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q   I  AL+GK+I+    TG+GKT A A  + +           +VL     L  Q  E
Sbjct  125  QAAAIPHALQGKDIVGIAETGSGKTAAFAIPILQTLYTAAQPYYALVLAPTRELAFQIKE  184

Query  66   EFRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
             F  +          + G M        L R   ++I T   L   L   +      L  
Sbjct  185  TFDALGSSMGLRSVCIIGGMSMMEQARDLMRKPHVIIATPGRLIDHLEHTKG---FSLKK  241

Query  125  FSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASP-------GTGGASK  177
               +V+DE      D  Y   + Q L+      +        TA+             S 
Sbjct  242  LQYLVMDEVDRMI-DLDYAKAIDQILKQIPSHQRITYLY---TATMSREIEKFKRSLNSP  297

Query  178  LDGAINHVLQLCANLD-TWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRS  225
            +   I  + ++   L  T C+ SP     +L +       +  +   R+
Sbjct  298  VQVEIVKLEKVPDKLKQTMCLTSPNTKDTRLIQIVNLDSMKRVIIFTRT  346


>sp|P35683|IF4A1_ORYSJ Eukaryotic initiation factor 4A-1 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os06g0701100 PE=2 SV=2
Length=414

 Score = 108 bits (269),  Expect = 6e-24, Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 61/165 (37%), Gaps = 15/165 (9%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K E     L   + +    + +IF  TR+    L   ++ +                  S
Sbjct  263  KEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGRD--------------HTVS  308

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
            +    M Q  +  ++++F+ G+  +L+ T +   G+D+   ++V+ Y L T   + +   
Sbjct  309  ATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRI  368

Query  470  GR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM  513
            GR  R  +   A        E     I      ++E+  A V  +
Sbjct  369  GRSGRFGRKGVAINFVTRDDERMLFDIQRFYNVVIEELPANVADL  413


>sp|Q9SZB4|RH43_ARATH Putative DEAD-box ATP-dependent RNA helicase 
43 OS=Arabidopsis thaliana OX=3702 GN=RH43 PE=3 SV=1
Length=542

 Score = 109 bits (273),  Expect = 7e-24, Method: Composition-based stats.
 Identities = 37/162 (23%), Positives = 61/162 (38%), Gaps = 20/162 (12%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+  L + LQ+      +P  +IF   +     +  +L              LL G    
Sbjct  336  KIVYLLECLQK-----TTPPVLIFCENKADVDDIHEYL--------------LLKGVEAV  376

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
            +      Q D+   I  F+ G  ++LVAT VA +GLD P    V+ Y +     + V   
Sbjct  377  AIHGGKDQEDRDYAISLFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPGEIENYVHRI  436

Query  470  GR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAV  510
            GR  R  ++  A      ++     L  + L    +Q +  V
Sbjct  437  GRTGRCGKTGIATTFINKNQSEITLLDLKHLLQEAKQRIPPV  478


 Score = 46.7 bits (109),  Expect = 6e-04, Method: Composition-based stats.
 Identities = 24/145 (17%), Positives = 50/145 (34%), Gaps = 20/145 (14%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAY--VAKRHLETV-------DGAKVVVLVNRV  57
            Q + +   L G+++I    TG+GKT       +     E +       +G   +V+    
Sbjct  124  QVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSR  183

Query  58   HLVTQHGEEFRRMLD-------GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMA  110
             L  Q  +   + +         R       G +  R+    + +   +++ T   L+  
Sbjct  184  ELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIVVATPGRLKDI  243

Query  111  LTSPEEEEHVELTVFSLIVVDECHH  135
            L   +    + L    L+ +DE   
Sbjct  244  LAKKK----MSLDACRLLTLDEADR  264


>sp|P41376|IF4A1_ARATH Eukaryotic initiation factor 4A-1 OS=Arabidopsis 
thaliana OX=3702 GN=EIF4A1 PE=1 SV=1
Length=412

 Score = 108 bits (269),  Expect = 7e-24, Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 75/201 (37%), Gaps = 20/201 (10%)

Query  315  VTKTQILCAERRLLALFDDRKNELAHLATH-GPENPKLEMLEKILQRQFSSSNSPRGIIF  373
            +T+  +    R L+   +     +     +   E  KLE L  +    + +    + +IF
Sbjct  229  ITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDL----YETLAITQSVIF  284

Query  374  TRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN  433
              TR+    L   ++ +                  S+    M Q  +  ++++F+ G+  
Sbjct  285  VNTRRKVDWLTDKMRSRD--------------HTVSATHGDMDQNTRDIIMREFRSGSSR  330

Query  434  LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKR  492
            +L+ T +   G+D+   ++V+ + L T   + +   GR  R  +   A        E   
Sbjct  331  VLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERML  390

Query  493  ELINEALETLMEQAVAAVQKM  513
              I +    ++E+  + V  +
Sbjct  391  FDIQKFYNVVVEELPSNVADL  411


>sp|Q6CJU1|DBP5_KLULA ATP-dependent RNA helicase DBP5 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 
1267 / NRRL Y-1140 / WM37) OX=284590 GN=DBP5 PE=3 SV=1
Length=469

 Score = 109 bits (271),  Expect = 8e-24, Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 72/180 (40%), Gaps = 23/180 (13%)

Query  352  EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ  411
            E    IL   +        IIF +T+Q+A+ L   L+++              G   S  
Sbjct  302  EHKYTILSELYGLLTIGSSIIFVKTKQTANLLYAKLKKE--------------GHQVSIL  347

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT------NEISM  465
               +  +D+  +I  F++G   +L+ T+V   G+DIP  ++VV Y L T      +  + 
Sbjct  348  HGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVVNYDLPTLPNGQADPSTY  407

Query  466  VQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD  524
            V   GR  R  ++  A       +    E+++   +   +  +  V   D  E +  ++ 
Sbjct  408  VHRIGRTGRFGRTGVAISFIHDKKSF--EVLSAIQKYFGDIEITKVPTDDLDEMETIVKK  465


 Score = 47.5 bits (111),  Expect = 3e-04, Method: Composition-based stats.
 Identities = 21/117 (18%), Positives = 44/117 (38%), Gaps = 8/117 (7%)

Query  18   KNIIIWLPTGAGKTRAAAYVAKRHLE-TVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWT  76
             N+I    +G GKT A +      ++  V+  + + L     L  Q  E  + M     T
Sbjct  119  HNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAICLSPARELARQTLEVIQEMGKFTKT  178

Query  77   VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC  133
             + L   + P +   +     ++++ T   +   +      + + L    + V+DE 
Sbjct  179  SSQL---VVPDSFERNKPITANIVVGTPGTVLDLI----RRKMLNLGSIKVFVLDEA  228


>sp|Q6Z2Z4|IF4A3_ORYSJ Eukaryotic initiation factor 4A-3 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os02g0146600 PE=1 SV=1
Length=414

 Score = 107 bits (268),  Expect = 8e-24, Method: Composition-based stats.
 Identities = 34/201 (17%), Positives = 74/201 (37%), Gaps = 20/201 (10%)

Query  315  VTKTQILCAERRLLALFDDRKNELAHLATH-GPENPKLEMLEKILQRQFSSSNSPRGIIF  373
            +T+  +    R L+   +     +     +   E+ KL+ L  +    + +    + +IF
Sbjct  231  ITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEDWKLDTLCDL----YETLAITQSVIF  286

Query  374  TRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN  433
              TR+    L   ++ +                  S+    M Q  +  ++++F+ G+  
Sbjct  287  VNTRRKVDWLTDKMRSRD--------------HTVSATHGDMDQNTRDIIMREFRSGSSR  332

Query  434  LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKR  492
            +L+ T +   G+D+   ++V+ Y L T   + +   GR  R  +   A        E   
Sbjct  333  VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERML  392

Query  493  ELINEALETLMEQAVAAVQKM  513
              I       +E+  A V  +
Sbjct  393  FDIQRFYNVTIEELPANVADL  413


>sp|Q4TVV3|DDX46_DANRE Probable ATP-dependent RNA helicase DDX46 
OS=Danio rerio OX=7955 GN=ddx46 PE=2 SV=1
Length=1018

 Score = 111 bits (276),  Expect = 9e-24, Method: Composition-based stats.
 Identities = 45/168 (27%), Positives = 64/168 (38%), Gaps = 18/168 (11%)

Query  347  ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA  406
            E  K   L +IL            IIF   ++ A  LL  L +             L G 
Sbjct  570  EEKKFLKLLEILGHY---QEKGSVIIFVDKQEHADGLLKDLMK------ASYPCMSLHG-  619

Query  407  GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV  466
                    + Q D+  +I  F++G   LLVATSVA  GLD+    +VV Y    +    V
Sbjct  620  -------GIDQYDRDSIINDFKNGACRLLVATSVAARGLDVKQLILVVNYSCPNHYEDYV  672

Query  467  QARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM  513
               GR  RA    YA+      +      I +ALE       A ++++
Sbjct  673  HRAGRTGRAGNKGYAYTFITEGQARYSGDILKALELSGSSVPAELEQL  720


 Score = 64.0 bits (154),  Expect = 4e-09, Method: Composition-based stats.
 Identities = 27/137 (20%), Positives = 52/137 (38%), Gaps = 10/137 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYV--AKRHLETVDGAK-----VVVLVNRVHL  59
            Q + I   + G+++I    TG+GKT  A  +   +  L+     +      V++     L
Sbjct  367  QAQAIPAIMSGRDLIGIAKTGSGKT-IAFLLPMFRHILDQRPVGEAEGPLAVIMTPTREL  425

Query  60   VTQHGEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEE  118
              Q  +E ++        V  + G  G       L R  ++++CT   +   L +     
Sbjct  426  ALQITKECKKFSKSLALRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLGANNGR-  484

Query  119  HVELTVFSLIVVDECHH  135
               L   + +V+DE   
Sbjct  485  VTNLRRVTYVVIDEADR  501


>sp|A5DDF4|PRP5_PICGU Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Meyerozyma guilliermondii (strain ATCC 6260 / 
CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 
GN=PRP5 PE=3 SV=2
Length=862

 Score = 110 bits (275),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 77/429 (18%), Positives = 147/429 (34%), Gaps = 61/429 (14%)

Query  167  TASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQP-CKQYNLCHRRS  225
            T SP     S+   AI     +    +T    +     P ++    QP  K  +      
Sbjct  289  TPSPI---QSQALPAIMSGRDIIGVANTGSGKTLAFVIPLIRHIMDQPPLKSGDGPIGVI  345

Query  226  QDPFGDLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEAAALAGLQEQRVYAL-  282
              P  +L  ++  ++ +  +  ELS    +G    E Q+  L     +      RV  L 
Sbjct  346  LTPTRELALQIQKELVNFTQAVELSVCCCYGGSPIESQIADLKRGTEIIVGTPGRVIDLL  405

Query  283  -------HLRRYNDALLIHDTVRAVD---------ALAALQDFYHREHVTKTQILCAERR  326
                      R    L++ +  R  D          L+ ++        + T        
Sbjct  406  AANGGRVTNLRRTTFLVLDEADRMFDMGFEPQVNKVLSQIRPDKQMVLFSAT-FPKKLES  464

Query  327  LLALFDDRKNELAH--LATHGPE---------------NPKLEMLEKILQRQFSSSNSPR  369
            L   F     E+    ++   PE                 KL+ L KI+          +
Sbjct  465  LARSFLVDPIEIVAGGISVVAPEITQRVVLIDDSGDISQKKLQALLKIVDEFSVEDPEGK  524

Query  370  GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD  429
             +IF   +++A  L++ L   Q      I   ++ G           Q D++  I++F D
Sbjct  525  ILIFVDKQEAADDLMVRLLNNQ------ISCIVIHG--------GKDQVDRKHAIKQFSD  570

Query  430  GT-LNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ---ARGRARADQSVYAFVATE  485
               L +L+ATS+A  GLD+   N+V+ Y   ++    V      GRA A  +    V + 
Sbjct  571  KNGLRVLIATSIAARGLDVRGLNLVINYDAPSHMEDYVHRVGRTGRAGATGTAVTLVLSS  630

Query  486  GSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQ  545
              RE++  +    +   ++   A +Q +   ++  K++   +               Q +
Sbjct  631  QEREIRDLVRAMKMSGKVDDIPAELQSI-ADKFLKKVK-SGEEKFNSGFGGKGLENLQER  688

Query  546  QFPVEHVQL  554
            +  V  +++
Sbjct  689  RDNVREIEM  697


 Score = 54.4 bits (129),  Expect = 3e-06, Method: Composition-based stats.
 Identities = 28/136 (21%), Positives = 47/136 (35%), Gaps = 8/136 (6%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKV------VVLVNRVHLV  60
            Q + +   + G++II    TG+GKT A      RH+      K       V+L     L 
Sbjct  294  QSQALPAIMSGRDIIGVANTGSGKTLAFVIPLIRHIMDQPPLKSGDGPIGVILTPTRELA  353

Query  61   TQ-HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
             Q   E          +V    G     +    L R  ++++ T   +   L +      
Sbjct  354  LQIQKELVNFTQAVELSVCCCYGGSPIESQIADLKRGTEIIVGTPGRVIDLLAANGGR-V  412

Query  120  VELTVFSLIVVDECHH  135
              L   + +V+DE   
Sbjct  413  TNLRRTTFLVLDEADR  428


>sp|Q41741|IF4A_MAIZE Eukaryotic initiation factor 4A OS=Zea mays 
OX=4577 PE=2 SV=1
Length=410

 Score = 107 bits (267),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 74/201 (37%), Gaps = 20/201 (10%)

Query  315  VTKTQILCAERRLLALFDDRKNELAHLATH-GPENPKLEMLEKILQRQFSSSNSPRGIIF  373
            +T+  +    R L+   +     +     +   E+ KL+ L  +    + +    + +IF
Sbjct  227  ITRKFMNKPVRILVKRDELTLEGIKQFYVNIDKEDWKLDTLCDL----YETLAITQSVIF  282

Query  374  TRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN  433
              TR+    L   ++ +                  S+    M Q  +  ++++F+ G+  
Sbjct  283  VNTRRKVDWLTDKMRSRD--------------HTVSATHGDMDQNTRDIIMREFRSGSSR  328

Query  434  LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKR  492
            +L+ T +   G+D+   ++V+ Y L T   + +   GR  R  +   A        E   
Sbjct  329  VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERIV  388

Query  493  ELINEALETLMEQAVAAVQKM  513
              +       +E+  A V  +
Sbjct  389  FDVQRFYNVTVEELPANVADL  409


>sp|A3LQ55|PRP5_PICST Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Scheffersomyces stipitis (strain ATCC 58785 / 
CBS 6054 / NBRC 10063 / NRRL Y-11545) OX=322104 GN=PRP5 PE=3 
SV=2
Length=875

 Score = 110 bits (275),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 65/400 (16%), Positives = 134/400 (34%), Gaps = 67/400 (17%)

Query  172  TGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQP-CKQYNLCHRRSQDPFG  230
            T   S+   AI     +     T    +     P L+    QP  K           P  
Sbjct  297  TSIQSQALPAIMSGRDIIGVAKTGSGKTLSFVLPMLRHIQDQPDLKDGEGPIGLILSPTR  356

Query  231  DLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEAAALAGLQEQRVYAL------  282
            +L  ++  +I +  +   ++    +G    E Q+ +L + A +      R+  L      
Sbjct  357  ELAVQIHKEITNFTKRLGMTACCCYGGSPIESQIAELKKGAQILVGTPGRIIELLAANSG  416

Query  283  --HLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH  340
                 R    +++ +  R  D     +    +   ++ +         A F  +   LA 
Sbjct  417  RITNLRRVTYVVLDEADRMFDL--GFEPQVTKIS-SQIRPESQTVLFSATFPRKIELLAK  473

Query  341  LATHGP------------------------------ENPKLEMLEKILQRQFSSSNSPRG  370
               + P                              E+ K + L  IL      S   + 
Sbjct  474  RLLYNPLEIIVGGISVVASEITQKVELFEKGESSQLEDEKFDRLLNILNVFSIESKHSKV  533

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ--STHMTQRDQQEVIQKF-  427
            +IF   + +A  LL+ L                +G+ +          Q D++  I++F 
Sbjct  534  LIFVEKQSAADDLLVKL----------------LGSNHPCLTIHGGKDQIDRKYAIKEFS  577

Query  428  -QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ---ARGRARADQSVYAFVA  483
             +D  +++L+ATS+A  GLD+   ++V+ Y    +    V      GRA    +   FV+
Sbjct  578  SKDSGVDILIATSIAARGLDVKGLDLVINYDPPNHMEDYVHRVGRTGRAGMKGTAITFVS  637

Query  484  TEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIR  523
            ++  R +   +    +  + E  + +     + ++  K++
Sbjct  638  SDQERSVTDLVRAMTMSKIPEDEIPSRLIEIRNQFLEKVK  677


 Score = 54.4 bits (129),  Expect = 3e-06, Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 46/136 (34%), Gaps = 8/136 (6%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK------VVVLVNRVHLV  60
            Q + +   + G++II    TG+GKT +      RH++     K       ++L     L 
Sbjct  300  QSQALPAIMSGRDIIGVAKTGSGKTLSFVLPMLRHIQDQPDLKDGEGPIGLILSPTRELA  359

Query  61   TQHGEEFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
             Q  +E                G     +    L +   +L+ T   +   L +      
Sbjct  360  VQIHKEITNFTKRLGMTACCCYGGSPIESQIAELKKGAQILVGTPGRIIELLAANSGR-I  418

Query  120  VELTVFSLIVVDECHH  135
              L   + +V+DE   
Sbjct  419  TNLRRVTYVVLDEADR  434


>sp|Q07886|DDX49_DROME Probable ATP-dependent RNA helicase Dbp45A 
OS=Drosophila melanogaster OX=7227 GN=Dbp45A PE=2 SV=2
Length=521

 Score = 109 bits (271),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 77/191 (40%), Gaps = 22/191 (12%)

Query  353  MLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQS  412
            +L + L++    + +   +IFT T++    L + L+  +                N    
Sbjct  237  VLIEALRKYREENENANVMIFTNTKKYCQLLSMTLKNME--------------IDNVCLH  282

Query  413  THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-  471
              M Q+++   + +F+   +  L+AT VA  GLDIP   +V+ + L       +   GR 
Sbjct  283  GFMRQKERVAALSRFKSNQIRTLIATDVAARGLDIPSVELVMNHMLPRTPKEYIHRVGRT  342

Query  472  ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALT  531
            ARA +   +       R+L+   +  A+E  +   +     +DQ   +       Q  +T
Sbjct  343  ARAGRKGMSISIFRFPRDLE---LLAAIEEEINTKLTEHP-IDQRMVERIF---MQVNVT  395

Query  532  KRAAQAAQREN  542
            +R ++     N
Sbjct  396  RRESEMQLDNN  406


 Score = 52.9 bits (125),  Expect = 7e-06, Method: Composition-based stats.
 Identities = 30/131 (23%), Positives = 43/131 (33%), Gaps = 5/131 (4%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVD-GAKVVVLVNRVHLVTQHGE  65
            Q + I   L G++ I    TG+GKT A A      L         +VL     L  Q  E
Sbjct  34   QQKCIPAILAGQDCIGAAKTGSGKTFAFALPILERLSEEPVSHFALVLTPTHELAYQISE  93

Query  66   EFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
            +F          V  +SG          L +   +++     L   LT  +         
Sbjct  94   QFLVAGQAMGVRVCVVSGGTDQMVESQKLMQRPHIVVAMPGRLADHLTGCDTFSF---DN  150

Query  125  FSLIVVDECHH  135
               +VVDE   
Sbjct  151  LKYLVVDEADR  161


>sp|Q2HEB0|PRP28_CHAGB Pre-mRNA-splicing ATP-dependent RNA helicase 
PRP28 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 
/ DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=PRP28 
PE=3 SV=1
Length=705

 Score = 109 bits (273),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 62/390 (16%), Positives = 135/390 (35%), Gaps = 60/390 (15%)

Query  137  HKDTVYNVIM---SQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLD  193
              D  Y +I+    + ++     A+     LG T     GG S  + A         N  
Sbjct  342  KNDGPYALILAPTRELVQQIETEARKFAGPLGFTVVSIVGGHSLEEQAFAL-----RNGA  396

Query  194  TWCIMSPQ---NCCPQLQEHSQQPCKQYNLCHRRSQDP-FGDLLKKLMDQIHDHLEMPEL  249
               + +P    +C  +      Q C        R  D  F + L K++D +    E P+ 
Sbjct  397  EIIVATPGRLVDCLERRLLVFSQCCYIIMDEADRMIDQGFEEPLTKILDALPVANEKPDT  456

Query  250  SRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDF  309
                 +Q+  +                   Y     RY   ++   T+        L + 
Sbjct  457  EDAENSQLMSR-------------------YLGGKDRYRQTMMYTATM------PPLVEK  491

Query  310  YHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPR  369
              ++++ +  I+       A+    +     +     E+ +   L++IL    S    P 
Sbjct  492  IAKKYLRRPAIVTIGNAGEAVDTVEQ----RVEFVSGEDKRKRRLQEILN---SGQFKPP  544

Query  370  GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD  429
             I+F   +++   +   ++                G    +     TQ  ++  +   ++
Sbjct  545  VIVFVNIKRNCEMVAKDIKSW--------------GYSTVTLHGSKTQEQREASLASVRN  590

Query  430  GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGS  487
            G  N+LVAT +A  G+D+   ++VV + + ++  +     GR  RA +S  A        
Sbjct  591  GQANILVATDLAGRGIDVADVSLVVNFNMPSSIEAYTHRIGRTGRAGKSGVAITFLGNED  650

Query  488  RELKRELINEALETLMEQAVAAVQKMDQAE  517
             ++  +L     ++ + +    +++ + A+
Sbjct  651  SDVMYDLKQIISKSSISKVPEELRRHEAAQ  680


 Score = 57.9 bits (138),  Expect = 2e-07, Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 48/139 (35%), Gaps = 14/139 (10%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT---------RAAAYVAKRHLETVDGAKVVVLVNRV  57
            Q   I  A + +++I    TG+GKT           +           DG   ++L    
Sbjct  296  QRAAIPIAQQARDLIGVAVTGSGKTAAFLLPLLVYISELPPLTEFNKNDGPYALILAPTR  355

Query  58   HLVTQHGEEFRRM-LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE  116
             LV Q   E R+      +TV ++ G          L    ++++ T   L   L    E
Sbjct  356  ELVQQIETEARKFAGPLGFTVVSIVGGHSLEEQAFALRNGAEIIVATPGRLVDCL----E  411

Query  117  EEHVELTVFSLIVVDECHH  135
               +  +    I++DE   
Sbjct  412  RRLLVFSQCCYIIMDEADR  430


>sp|A7TEF4|FAL1_VANPO ATP-dependent RNA helicase FAL1 OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=FAL1 PE=3 SV=1
Length=399

 Score = 107 bits (266),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 70/199 (35%), Gaps = 26/199 (13%)

Query  315  VTKTQILCAERRLLALFDDRKNELAHLATH-GPENPKLEMLEKILQRQFSSSNSPRGIIF  373
            VTK  +    + L+   +     +     +   E+ K + L  +    + S    + +IF
Sbjct  216  VTKKFMSDPVKILVKRDEISLEGIKQYYVNVEKEDWKFDTLCDL----YDSLTITQCVIF  271

Query  374  TRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN  433
              T++    L   L Q                    S    M Q D+ +V+  F+ G   
Sbjct  272  CNTKKKVDWLSAKLTQSN--------------FAVVSMHGDMKQEDRNKVMSDFRSGHSR  317

Query  434  LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELK  491
            +L++T V   G+D+   ++V+ Y +     + +   GR  R  +   A    T       
Sbjct  318  VLISTDVWARGIDVQQVSLVINYDIPEIMENYIHRIGRSGRFGRKGVAINFITSSDLSKM  377

Query  492  RELINEALETLMEQAVAAV  510
            +E     +E      ++ V
Sbjct  378  KE-----IEKYYRIKISPV  391


 Score = 40.9 bits (94),  Expect = 0.029, Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 37/130 (28%), Gaps = 7/130 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE  65
            Q   I   + G ++I    +G GKT        + ++      + +VL     L +Q  +
Sbjct  50   QSRAITQIISGTDVIAQAQSGTGKTATFTIGMLQAIDLKRKDLQALVLSPTRELASQINQ  109

Query  66   EFRRMLD--GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELT  123
                + D     +     G                ++  T   +                
Sbjct  110  VVSNLGDYMNVQSYAMTGGKTMKDDLNRMQKNGCQVVSGTPGRVLDMFKRHLLNT----R  165

Query  124  VFSLIVVDEC  133
               ++++DE 
Sbjct  166  NVQMLILDEA  175


>sp|P41377|IF4A2_ARATH Eukaryotic initiation factor 4A-2 OS=Arabidopsis 
thaliana OX=3702 GN=TIF4A-2 PE=1 SV=1
Length=412

 Score = 107 bits (267),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 32/201 (16%), Positives = 76/201 (38%), Gaps = 20/201 (10%)

Query  315  VTKTQILCAERRLLALFDDRKNELAHLATH-GPENPKLEMLEKILQRQFSSSNSPRGIIF  373
            +T+  +    R L+   +     +     +   E+ KLE L  +    + +    + +IF
Sbjct  229  ITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEDWKLETLCDL----YETLAITQSVIF  284

Query  374  TRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN  433
              TR+    L   ++ +                  S+    M Q  +  ++++F+ G+  
Sbjct  285  VNTRRKVDWLTDKMRSRD--------------HTVSATHGDMDQNTRDIIMREFRSGSSR  330

Query  434  LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKR  492
            +L+ T +   G+D+   ++V+ + L T   + +   GR  R  +   A        +   
Sbjct  331  VLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDQRML  390

Query  493  ELINEALETLMEQAVAAVQKM  513
              I +    ++E+  + V  +
Sbjct  391  FDIQKFYNVVVEELPSNVADL  411


>sp|Q5K5B6|RH57_ORYSJ DEAD-box ATP-dependent RNA helicase 57 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os07g0647900 PE=2 
SV=2
Length=540

 Score = 108 bits (270),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 54/298 (18%), Positives = 114/298 (38%), Gaps = 22/298 (7%)

Query  206  QLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKL  265
            +L   + + CK+     +         L K  +    H ++   +        +++ + L
Sbjct  226  ELAAQTTRECKKLAKGRKFYIKLMTKDLSKSGNFKDMHCDILISTPLRLDHAVQKRDLDL  285

Query  266  SEAAALAGLQEQRVYALHLRRYNDALLIH-DTVRAVDALAALQDFYHREHVTKTQILCAE  324
            S    L   +  +++ L      D+++        + +L +       E + +T +  A 
Sbjct  286  SRVEYLVLDESDKLFELGFVEVIDSVVKACSNPSIIRSLFSATLPDSIETLARTIMHDAV  345

Query  325  RRLLALFDDRKNELAH-LATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSL  383
            R ++   +   + +   L   G E  KL  L +     F+ S +P  +IF ++++ A  L
Sbjct  346  RVIVGRKNSASSLIKQKLIFAGTEKGKLLALRQ----SFAESLNPPVLIFVQSKERAKEL  401

Query  384  LLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEE  443
                   + L   D+RA ++           + +  +Q+ +   + G   +L+AT V   
Sbjct  402  ------YKELAFDDVRADVI--------HADLDEEQRQDAVDNLRAGKTWVLIATEVIAR  447

Query  444  GLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEAL  499
            G+D    N V+ Y    +  + +   GR  RA +S  A    TE  +   R + N  +
Sbjct  448  GMDFKGVNCVINYDFPESASAYIHRIGRSGRAGRSGEAITFFTEEDKPFLRNIANVLI  505


 Score = 59.8 bits (143),  Expect = 6e-08, Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 57/130 (44%), Gaps = 11/130 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAY---VAKRHLETVDGAKVVVLVNRVHLVTQH  63
            Q + I   L G+      PTG+GKT  A     + K    + +G K V+L     L  Q 
Sbjct  173  QRQAIPILLSGRECFACAPTGSGKTL-AFLFPILMKIKPGSKEGVKAVILCPTRELAAQT  231

Query  64   GEEFRRMLDGR-WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
              E +++  GR + +  ++ D+     F  +    D+LI T   L  A+   +    ++L
Sbjct  232  TRECKKLAKGRKFYIKLMTKDLSKSGNFKDM--HCDILISTPLRLDHAVQKRD----LDL  285

Query  123  TVFSLIVVDE  132
            +    +V+DE
Sbjct  286  SRVEYLVLDE  295


>sp|Q7RYZ7|DBP8_NEUCR ATP-dependent RNA helicase dbp-8 OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / 
DSM 1257 / FGSC 987) OX=367110 GN=dbp-8 PE=3 SV=1
Length=626

 Score = 109 bits (272),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 43/209 (21%), Positives = 75/209 (36%), Gaps = 21/209 (10%)

Query  338  LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD  397
            L  +    P   +   L   L      +     IIF     +A                 
Sbjct  423  LRQMHLQVPVTHREHYLHMFLLT--PQNVDKSVIIFCNRTSTAD--------------FL  466

Query  398  IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG  457
                 L+    +S  + + Q  + + + +F+     +LVAT VA  GLDIP   +V+ Y 
Sbjct  467  HHLLRLLDHRVTSLHSKLPQSQRIDNLGRFRASAARILVATDVAARGLDIPEVKIVINYD  526

Query  458  LLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQA  516
            +  +    +   GR ARA +   A     G R++   L   A+E  + + + A  +    
Sbjct  527  IPRDPDDYIHRVGRTARAGRKGDAVTFV-GQRDVDLVL---AIEQRVGRQMEAWTEEGVN  582

Query  517  EYQAKIRDLQQAALTKRAAQAAQRENQRQ  545
                 IRD  +    K+     + E Q++
Sbjct  583  LETRVIRDALKVVGEKKREALLEIEEQKE  611


 Score = 57.9 bits (138),  Expect = 2e-07, Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 74/236 (31%), Gaps = 21/236 (9%)

Query  15   LEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE-EFRRMLD  72
            L+G++ I    TG+GKT A A  + ++          V+L     L  Q  E        
Sbjct  230  LKGRDCIGGSRTGSGKTVAFAVPILQQWAANPSAIFGVILTPTRELALQIMEQVIALSQP  289

Query  73   GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDE  132
                   ++G    R     LA+   L+I T   L   + +  E+    L     IV+DE
Sbjct  290  HVLKAVLITGGADMRKQAIDLAKRPHLVIATPGRLADHIRTSGEDTICGLRRVKFIVLDE  349

Query  133  CHHTHKDTVYNVIMSQYLELKLQRAQPLPQ-VLGLTAS------------PGTGGASKLD  179
                  ++ +  ++    E       P  +  L  TA+            P  G A    
Sbjct  350  ADRLLANSGHGSMLPDVEECFSVLPPPSERQTLLFTATMTPEVKALSERPPIPGRAPVFV  409

Query  180  GAINHV-LQLCANLDTWCIMSPQNCCPQ-----LQEHSQQPCKQYNLCHRRSQDPF  229
              ++   L + A L    +  P           L             C+R S   F
Sbjct  410  CEVDTQRLAIPATLRQMHLQVPVTHREHYLHMFLLTPQNVDKSVIIFCNRTSTADF  465


>sp|Q40465|IF411_TOBAC Eukaryotic initiation factor 4A-11 OS=Nicotiana 
tabacum OX=4097 PE=2 SV=1
Length=413

 Score = 107 bits (266),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 74/201 (37%), Gaps = 20/201 (10%)

Query  315  VTKTQILCAERRLLALFDDRKNELAHLATH-GPENPKLEMLEKILQRQFSSSNSPRGIIF  373
            +T+  +    R L+   +     +     +   E  KLE L  +    + +    + +IF
Sbjct  230  ITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDL----YETLAITQSVIF  285

Query  374  TRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN  433
              TR+    L   ++ +                  S+    M Q  +  ++++F+ G+  
Sbjct  286  VNTRRKVDWLTDKMRGRD--------------HTVSATHGDMDQNTRDIIMREFRSGSSR  331

Query  434  LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKR  492
            +L+ T +   G+D+   ++V+ Y L T   + +   G   R  +   +        E   
Sbjct  332  VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGHSGRFGRKGVSINFVTKDDERML  391

Query  493  ELINEALETLMEQAVAAVQKM  513
              I +    ++E+  A V  +
Sbjct  392  FDIQKFYNVVIEELPANVADL  412


>sp|A3LSN3|DRS1_PICST ATP-dependent RNA helicase DRS1 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=DRS1 PE=3 SV=3
Length=741

 Score = 109 bits (272),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 81/210 (39%), Gaps = 24/210 (11%)

Query  336  NELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQT  395
             E   +       P    L   L ++   +   R ++F   ++SAH L + L        
Sbjct  443  QEFVRIRKRDHLKP---ALLFQLLKKLDPAQQSRIVVFVSRKESAHKLRIVLG-------  492

Query  396  VDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVR  455
                   L+G   S     +TQ  +   +  F+   + +L+ T +A  GLDIP   +V+ 
Sbjct  493  -------LLGMKVSELHGSLTQEQRLNNVNDFKKLIVPVLICTDLAARGLDIPKIEIVIN  545

Query  456  YGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLM-----EQAVAA  509
            Y +  +    +   GR ARA +   +     G     R ++ +A+++L       +AV+ 
Sbjct  546  YDMPKSHEVYLHRVGRTARAGRDGTSISFV-GESTSDRNIVKDAIKSLEGGEVKGKAVSR  604

Query  510  VQKMDQAEYQAKIRDLQQAALTKRAAQAAQ  539
                   E   KI + +Q  + +   +  Q
Sbjct  605  NIDWVDVEQLNKIVESKQEIIEEVLDEEKQ  634


 Score = 54.0 bits (128),  Expect = 3e-06, Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 47/128 (37%), Gaps = 9/128 (7%)

Query  14   ALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA----KVVVLVNRVHLVTQHGEEFRR  69
            AL G++I+    TG+GKT A        L          +V+VL     L  Q G+  ++
Sbjct  256  ALLGRDIVAGAVTGSGKTAAYMIPIIERLLYKPSKVASTRVIVLTPTRELAIQVGDVGKK  315

Query  70   MLDGRWTV--TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSL  127
            +      +      G +  R     L    D++I T   L   + +        +    +
Sbjct  316  IGQFVNNLNFGLAVGGLNLRQQEQQLKSRPDVVIATPGRLIDHIRNSPS---FSIDSLEV  372

Query  128  IVVDECHH  135
            +V+DE   
Sbjct  373  LVIDEADR  380


>sp|Q755W0|FAL1_EREGS ATP-dependent RNA helicase FAL1 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=FAL1 PE=3 SV=2
Length=398

 Score = 106 bits (265),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 33/168 (20%), Positives = 61/168 (36%), Gaps = 18/168 (11%)

Query  315  VTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFT  374
            VTK  +    + L+   +     +     +     K E     L   + S    + +IF 
Sbjct  215  VTKKFMSDPVKILVKRDEVSLEGIKQYHINVD---KEEWKFDTLCDLYDSLTITQCVIFC  271

Query  375  RTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNL  434
             T++    L   L Q                   +S    M Q D+ +V+  F+ G+  +
Sbjct  272  NTKKKVDWLSHKLIQNN--------------FAVASIHGDMKQDDRDKVMSDFRSGSSRV  317

Query  435  LVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF  481
            L++T V   G+D+   ++V+ Y L     + +   GR  R  +   A 
Sbjct  318  LISTDVWARGIDVQQVSLVINYDLPELLENYIHRIGRSGRFGRKGVAI  365


 Score = 47.5 bits (111),  Expect = 3e-04, Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 46/129 (36%), Gaps = 6/129 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE  65
            Q   I   + GK++I    +G GKT        + +++     + +VL     L  Q  +
Sbjct  50   QSRAITQIIRGKDVIAQAQSGTGKTATFTIGMLQVIDSSSKDLQALVLSPTRELAAQISQ  109

Query  66   EFRRMLDGRWTVT-TLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
              R + D    V    +G    +     + +   ++  T   +   +    +   +    
Sbjct  110  VVRNLGDYMNVVALACTGGKALQQDISKVNKGCHVMSGTPGRVLDMI----KRRIINTRH  165

Query  125  FSLIVVDEC  133
              ++V+DE 
Sbjct  166  VKMLVLDEA  174


>sp|Q8H0U8|RH42_ARATH DEAD-box ATP-dependent RNA helicase 42 OS=Arabidopsis 
thaliana OX=3702 GN=RH42 PE=1 SV=2
Length=1166

 Score = 109 bits (273),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 39/196 (20%), Positives = 77/196 (39%), Gaps = 20/196 (10%)

Query  335  KNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQ  394
              ++  L    PE+ +   L ++L      S   + ++F ++++   +L   + +     
Sbjct  747  NKDITQLVEVRPESDRFLRLLELLGEW---SEKGKILVFVQSQEKCDALYRDMIKSSYPC  803

Query  395  TVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV  454
                           S      Q D++  I  F++   NLL+ATSVA  GLD+    +VV
Sbjct  804  L--------------SLHGGKDQTDRESTISDFKNDVCNLLIATSVAARGLDVKELELVV  849

Query  455  RYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQK  512
             +    +    V   GR  RA +   A    +E   +   +L+ +ALE   +     ++ 
Sbjct  850  NFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDLV-KALELSEQPVPDDLKA  908

Query  513  MDQAEYQAKIRDLQQA  528
            +         + ++QA
Sbjct  909  LADGFMVKVKQGIEQA  924


 Score = 62.5 bits (150),  Expect = 1e-08, Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 50/136 (37%), Gaps = 8/136 (6%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKV------VVLVNRVHLV  60
            Q + +   + G++ I    TG+GKT        RH++     +       +V+     LV
Sbjct  556  QTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELV  615

Query  61   TQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
             Q   + R+           + G  G       L R  ++++CT   +   L +   +  
Sbjct  616  QQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGK-I  674

Query  120  VELTVFSLIVVDECHH  135
              L   + +V+DE   
Sbjct  675  TNLRRVTFLVMDEADR  690


>sp|P41378|IF4A_WHEAT Eukaryotic initiation factor 4A OS=Triticum 
aestivum OX=4565 PE=2 SV=1
Length=414

 Score = 106 bits (265),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 61/165 (37%), Gaps = 15/165 (9%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K E     L   + +    + +IF  TR+    L   ++ +                  S
Sbjct  263  KEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGRD--------------HTVS  308

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
            +    M Q  +  ++++F+ G+  +L+ T +   G+D+   ++V+ Y L T   +     
Sbjct  309  ATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYQHRI  368

Query  470  GR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM  513
            GR  R  +   A        E     I +    ++E+  A V  +
Sbjct  369  GRSGRFGRKGVAINFVTREDERMLFDIQKFYNVVIEELPANVADL  413


>sp|Q4I7F9|PRP28_GIBZE Pre-mRNA-splicing ATP-dependent RNA helicase 
PRP28 OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 
/ FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=PRP28 PE=3 
SV=1
Length=721

 Score = 109 bits (271),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 51/351 (15%), Positives = 123/351 (35%), Gaps = 54/351 (15%)

Query  204  CPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLM---------DQIHDHLEMPELSRKFG  254
               +   +++  +Q     R+   P G  +  ++           + D  E+   +    
Sbjct  366  YALIMAPTRELVQQIETEARKFAGPLGFRVVSIVGGHQIEEQAYNLRDGAEIVVATPGRL  425

Query  255  TQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALL-------------IHDTVRAVD  301
                E++++ LS+   +   +  R+  L      + +L               +  + + 
Sbjct  426  LDCIERRLLVLSQCCYVIMDEADRMIDLGFEESVNKILDALPVTNEKPDTDEAENAQIMQ  485

Query  302  ALAALQDFYHREHVTKTQILCAERRLLALFDDRKNEL-------------AHLATHGPEN  348
                 +D Y +  +    +     R+   +  R   +               +     E+
Sbjct  486  RYLGGRDRYRQTMMYTATMPPLVERIAKKYLRRPAIVTIGNAGEAVDTVEQRVEFVSGED  545

Query  349  PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN  408
             + + L++IL    S +  P  I+F   +++  ++   ++Q              +G   
Sbjct  546  RRKKRLQEILS---SGNFGPPIIVFVNIKRNCDAVARDIKQ--------------MGWSA  588

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
             +     TQ  ++  +   + G   +LVAT +A  G+D+P  ++VV + + TN  S    
Sbjct  589  VTLHGSKTQEQREAALGSVRAGHTQVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHR  648

Query  469  RGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQAE  517
             GR  RA +S  A         E   +L     ++ + +    +++ + A+
Sbjct  649  IGRTGRAGKSGVAITFLGPEDHETMYDLKQILSKSSISKVPEELRRHEAAQ  699


 Score = 59.0 bits (141),  Expect = 1e-07, Method: Composition-based stats.
 Identities = 26/139 (19%), Positives = 51/139 (37%), Gaps = 14/139 (10%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT---------RAAAYVAKRHLETVDGAKVVVLVNRV  57
            Q   I  AL+ +++I    TG+GKT           +       +   DG   +++    
Sbjct  315  QRAAIPIALQARDLIGVAVTGSGKTAAFLLPLLVYISDLPPLDEINKHDGPYALIMAPTR  374

Query  58   HLVTQHGEEFRRM-LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE  116
             LV Q   E R+      + V ++ G         +L    ++++ T   L   +    E
Sbjct  375  ELVQQIETEARKFAGPLGFRVVSIVGGHQIEEQAYNLRDGAEIVVATPGRLLDCI----E  430

Query  117  EEHVELTVFSLIVVDECHH  135
               + L+    +++DE   
Sbjct  431  RRLLVLSQCCYVIMDEADR  449


>sp|Q07736|T1RA_ECOLX Type I restriction enzyme EcoAI endonuclease 
subunit OS=Escherichia coli OX=562 GN=hsdR PE=1 SV=1
Length=810

 Score = 109 bits (271),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 48/183 (26%), Positives = 76/183 (42%), Gaps = 34/183 (19%)

Query  2    ELRSYQWEVIMPALE----GKN-IIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNR  56
              R YQ + I   +E    G+N +++ + TG GKT  A  +  R  ++ +  +++ L +R
Sbjct  169  SPRYYQLQAINKTIEAVSNGQNRVLLVMATGTGKTYTAFQIIWRLWKSKNKKRILFLADR  228

Query  57   VHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE  116
              LV Q              +T +SG     A   HLA            L  A+T PEE
Sbjct  229  NILVDQTKN--NDFQPFGTAMTKVSGRTIDPAYEIHLA------------LYQAITGPEE  274

Query  117  EE----HVELTVFSLIVVDECHH--THKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASP  170
            ++     V    F LIV+DECH     +D+ +  I+  +              +GLTA+P
Sbjct  275  DQKAFKQVAPDFFDLIVIDECHRGSASEDSAWREILDYFSSATQ---------IGLTATP  325

Query  171  GTG  173
               
Sbjct  326  KET  328


 Score = 45.6 bits (106),  Expect = 0.001, Method: Composition-based stats.
 Identities = 26/208 (13%), Positives = 66/208 (32%), Gaps = 17/208 (8%)

Query  329  ALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNS-PRGIIFTRTRQSAHSLLLWL  387
             + DDR             + + E++ + +      +N   + I+F      A  +   L
Sbjct  384  EVIDDRIYNQKDFDRTMVIDERTELVARTITDYLKRTNPMDKTIVFCNDIDHAERMRRAL  443

Query  388  QQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGT--LNLLVATS-VAEEG  444
                  Q    +    +            Q      +  F +      ++  TS +   G
Sbjct  444  VNLNPEQVK--KNDKYVMKITGDDEIGKAQ------LDNFINPKKPYPVIATTSELMTTG  495

Query  445  LDIPHCNVVVRYGLLTNEISMVQARGRA-----RADQSVYAFVATEGSRELKRELINEAL  499
            +D   C +VV    + +     Q  GR      R  +  +  +  + + EL  +   + +
Sbjct  496  VDAKTCKLVVLDQNIQSMTKFKQIIGRGTRIDERYGKLWFTILDFKKATELFADERFDGI  555

Query  500  ETLMEQAVAAVQKMDQAEYQAKIRDLQQ  527
               +           +++++ K+ ++ +
Sbjct  556  PEKVMDTTPEDIADPESDFEEKLEEISE  583


>sp|A5E058|PRP5_LODEL Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Lodderomyces elongisporus (strain ATCC 11503 
/ CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) OX=379508 
GN=PRP5 PE=3 SV=1
Length=994

 Score = 109 bits (272),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 64/356 (18%), Positives = 132/356 (37%), Gaps = 45/356 (13%)

Query  164  LGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHR  223
            +GL  SP    A +++  I        +L   C     N   Q+ E  ++          
Sbjct  463  IGLVLSPTRELALQIEKEILKFSST-MDLKVCCCYGGSNIENQISE-LKRGVNVIVATPG  520

Query  224  RSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKL--SEAAALAGLQEQRVYA  281
            R  D       ++         + + + +     +E Q+ K+          +     + 
Sbjct  521  RLIDLLAANGGRITTLRRTTFVVLDEADRMFDMGFEPQIQKIFTQIRPDKQTVLFSATFP  580

Query  282  LHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHL  341
              L +    +L             ++       V  ++I     + + LF+D    + H 
Sbjct  581  RKLEQLAKKVL----------HNPIEIIVGGVSVVASEI----SQEIILFEDTDQLMNH-  625

Query  342  ATHGPENPKLEMLEKILQRQFS-SSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRA  400
                    K++ LE IL R F    N+ + ++F   +  A  L+  L ++       I  
Sbjct  626  --------KIQKLEDILSRFFDLGKNTGKVLVFVEKQTDADKLVSVLLKKA------IPC  671

Query  401  QLLIGAGNSSQSTHMTQRDQQEVIQKFQDGT--LNLLVATSVAEEGLDIPHCNVVVRYGL  458
              + G           Q D++  I++F D    +N+L+ATS+A  GLD+ + ++VV +  
Sbjct  672  IAIHG--------GKDQIDRKHAIREFSDDQSGINVLIATSIAARGLDVRNLDLVVNFEP  723

Query  459  LTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM  513
             ++    V   GR  RA +   A    + ++E +  ++ +AL+       + +Q++
Sbjct  724  PSHLEDYVHRVGRTGRAGKHGEAITFVDNTQEKEISILVKALKMSSRAVDSKLQEI  779


 Score = 47.5 bits (111),  Expect = 4e-04, Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 49/136 (36%), Gaps = 8/136 (6%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETV------DGAKVVVLVNRVHLV  60
            Q + I   L G+++I    TG+GKT +      RH++        +G   +VL     L 
Sbjct  415  QCQAIPIVLSGRDMIGVAKTGSGKTLSYVLPMVRHIQDQLFPKPGEGPIGLVLSPTRELA  474

Query  61   TQHGEEFRRM-LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
             Q  +E  +        V    G          L R  ++++ T   L   L +      
Sbjct  475  LQIEKEILKFSSTMDLKVCCCYGGSNIENQISELKRGVNVIVATPGRLIDLLAANGGR-I  533

Query  120  VELTVFSLIVVDECHH  135
              L   + +V+DE   
Sbjct  534  TTLRRTTFVVLDEADR  549


>sp|Q9FZ92|RH44_ARATH Putative DEAD-box ATP-dependent RNA helicase 
44 OS=Arabidopsis thaliana OX=3702 GN=RH44 PE=5 SV=2
Length=622

 Score = 108 bits (269),  Expect = 3e-23, Method: Composition-based stats.
 Identities = 52/331 (16%), Positives = 105/331 (32%), Gaps = 66/331 (20%)

Query  220  LCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKF---------GTQMYEQQVVKLSEAAA  270
                +++ P+  ++    +  H   E      ++         G +  E+Q +KLS+   
Sbjct  279  REENQTEGPYALVMVPTRELAHQIEEETVKFSRYLGFKAVSITGWESIEKQALKLSQGCE  338

Query  271  LAGLQEQRVYALHLRRYN-----DALLIHDTVRAVD------------------------  301
            +      R+     RRY      + L++ +  R +D                        
Sbjct  339  IVIATPGRLLDCLERRYVVLNQCNYLVLDEADRMIDMDFEPQVSEVLDVMPCSNLKPEKE  398

Query  302  -ALAALQDFYHREHVTKTQILCAERRLLALFDDRK---------NELAHLATHGPENPKL  351
                  +  Y   ++    +L +  RL   F               +        E+ K 
Sbjct  399  DEELEEKKIYRTTYMFSATMLLSVERLARKFLRNPVVVTIGETTKFITQQVIMTKESDKF  458

Query  352  EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ  411
              L+K++       +    I+F  TR     ++  L++    +   + A           
Sbjct  459  SRLKKLIDDL---GDDKTAIVFVNTRNKVDYIVKNLEKVGRCRVTTLHA-----------  504

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
                +Q  +   +++F+    N+LV T V   GLDI     V+ Y +           GR
Sbjct  505  --GKSQEQRDYSLEEFKKKRFNVLVTTDVLGRGLDILDLAQVINYDMPNTMDLYTHRIGR  562

Query  472  -ARADQSVYA-FVATEGSRELKRELINEALE  500
              RA ++  A    T   +++   L  +  E
Sbjct  563  TGRAGKTGVATTFLTLEDKDVFYGLKQKLNE  593


 Score = 57.1 bits (136),  Expect = 3e-07, Method: Composition-based stats.
 Identities = 30/144 (21%), Positives = 58/144 (40%), Gaps = 15/144 (10%)

Query  2    ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK---------VVV  52
             +R+++ E I   LE +++I    TG+GKT A       ++  +   +          +V
Sbjct  233  PMRNWE-ETIPLGLEQRDVIGISATGSGKTAAFVLPMLAYISRLPPMREENQTEGPYALV  291

Query  53   LVNRVHLVTQHGEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMAL  111
            +V    L  Q  EE  +      +   +++G          L++  +++I T   L   L
Sbjct  292  MVPTRELAHQIEEETVKFSRYLGFKAVSITGWESIEKQALKLSQGCEIVIATPGRLLDCL  351

Query  112  TSPEEEEHVELTVFSLIVVDECHH  135
                E  +V L   + +V+DE   
Sbjct  352  ----ERRYVVLNQCNYLVLDEADR  371


>sp|Q47281|T1RE_ECOLX Type I restriction enzyme EcoEI endonuclease 
subunit OS=Escherichia coli OX=562 GN=hsdR PE=3 SV=1
Length=813

 Score = 108 bits (269),  Expect = 5e-23, Method: Composition-based stats.
 Identities = 48/184 (26%), Positives = 74/184 (40%), Gaps = 34/184 (18%)

Query  2    ELRSYQWEVIMPALE----GKN-IIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNR  56
              R YQ + I   ++    GKN I++ + TG GKT  A  +  R  +  +  +++ L +R
Sbjct  167  APRYYQMQAINRTVDAVSAGKNRILLVMATGTGKTYTAFQIIWRLWKAKNKKRILFLADR  226

Query  57   VHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE  116
              LV Q              +T ++G     A   HLA            L  A+T PEE
Sbjct  227  NILVDQTKR--NDFQPFGNAMTKVTGRTIDPAYEVHLA------------LYQAITGPEE  272

Query  117  EE----HVELTVFSLIVVDECHH--THKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASP  170
             +     V    F LIV+DECH     +D+ +  I+  +              +GLTA+P
Sbjct  273  HQKAYKQVAPDFFDLIVIDECHRGSASEDSAWREILEYFGSATQ---------VGLTATP  323

Query  171  GTGG  174
                
Sbjct  324  KETE  327


 Score = 35.5 bits (80),  Expect = 2.0, Method: Composition-based stats.
 Identities = 26/186 (14%), Positives = 56/186 (30%), Gaps = 12/186 (6%)

Query  363  SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE  422
             ++   + I+F      A  +   L      Q   ++ +  +            Q     
Sbjct  417  RTNPMDKTIVFCNDIDHADRMRHALVVLNPEQV--LKNEKYVMKITGDDDIGKAQ-----  469

Query  423  VIQKFQD--GTLNLLVATS-VAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA-RADQSV  478
             +  F +      ++  TS +   G+D   C +VV    + +     Q  GR  R ++  
Sbjct  470  -LDNFINPKKAYPVIATTSELMTTGVDAQTCKLVVLDQNIQSMTKFKQIIGRGTRINEKH  528

Query  479  YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA  538
                 T    +   EL  +     + + V  V+  D ++  +   +   A          
Sbjct  529  GKLWFTILDFKKATELFADPRFDGLPEKVLVVKPGDISDKDSDFNEQLDAENNADGGDND  588

Query  539  QRENQR  544
              E + 
Sbjct  589  ASEARE  594


>sp|Q553B1|DDX46_DICDI ATP-dependent RNA helicase ddx46 OS=Dictyostelium 
discoideum OX=44689 GN=helB1 PE=2 SV=1
Length=1151

 Score = 108 bits (270),  Expect = 5e-23, Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 85/223 (38%), Gaps = 19/223 (9%)

Query  313  EHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGII  372
            E+V K  +      +        +++       P   +   L ++L   +   +  + +I
Sbjct  705  ENVAKKILNKPLEIIAGGRSIVSSDIEQFVEVRPTETRFRRLIELLSIWY---HKGQILI  761

Query  373  FTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTL  432
            FT  +++  +L   L   Q       +   L G+ +        Q D+ E I  F++   
Sbjct  762  FTNRQETTDNLYRQLSNSQ------YQCLSLHGSKD--------QTDRDETISDFKNKVK  807

Query  433  NLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELK  491
             +L+AT +A  GLDI   N+VV +    +    V   GR  RA     A+       E  
Sbjct  808  TILIATPLASRGLDIKDLNLVVNFDCPDHLEDYVHRVGRTGRAGNRGTAYTFITPDEERF  867

Query  492  RELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRA  534
               I +ALE    +    ++K++   Y+ K ++ +   L    
Sbjct  868  SSSIIKALEQSGSKVPDELRKLNDT-YEKKRKEGKDVLLAPTG  909


 Score = 56.3 bits (134),  Expect = 7e-07, Method: Composition-based stats.
 Identities = 51/372 (14%), Positives = 119/372 (32%), Gaps = 18/372 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK------VVVLVNRVHLV  60
            Q + I   + G+++I    TG+GKT A      RH+     +        +++     L 
Sbjct  536  QAQTIPAIMNGRDLIGIARTGSGKTLAFLLPMFRHILAQPKSAPGEGMIALIMSPTRELA  595

Query  61   TQHGEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
             Q   E ++           + G          L R  D+++CT   +   L +      
Sbjct  596  LQIHVECKKFSKVLGLRTACVYGGASISEQIAELKRGADIVVCTPGRMIDILCANNRR-I  654

Query  120  VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLD  179
              L   + +V+DE      D ++++     +   +   +P  Q +  +A+      +   
Sbjct  655  TNLRRVTFLVLDEA-----DRMFDMGFGPQINCIVDSIRPDRQTIMFSATFPPKVENVAK  709

Query  180  GAINHVLQLCA---NLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKL  236
              +N  L++ A   ++ +  I       P  +   ++  +  ++ + + Q       ++ 
Sbjct  710  KILNKPLEIIAGGRSIVSSDIEQFVEVRP-TETRFRRLIELLSIWYHKGQILIFTNRQET  768

Query  237  MDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDT  296
             D ++  L   +          + Q  +    +      +  + A  L      +   + 
Sbjct  769  TDNLYRQLSNSQYQC-LSLHGSKDQTDRDETISDFKNKVKTILIATPLASRGLDIKDLNL  827

Query  297  VRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEK  356
            V   D    L+D+ HR   T               D+ +   + +        K+    +
Sbjct  828  VVNFDCPDHLEDYVHRVGRTGRAGNRGTAYTFITPDEERFSSSIIKALEQSGSKVPDELR  887

Query  357  ILQRQFSSSNSP  368
             L   +      
Sbjct  888  KLNDTYEKKRKE  899


>sp|Q09747|DBP5_SCHPO ATP-dependent RNA helicase dbp5 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=dbp5 
PE=1 SV=1
Length=503

 Score = 106 bits (265),  Expect = 5e-23, Method: Composition-based stats.
 Identities = 44/325 (14%), Positives = 112/325 (34%), Gaps = 45/325 (14%)

Query  228  PFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAG-------LQEQRVY  280
            P  +L +++MD + +  +  E+   FG +    +  K+     +         ++ +++ 
Sbjct  192  PSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLD  251

Query  281  ALHLRRYN---------DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALF  331
            A  ++ +             L   ++R    L               ++     R     
Sbjct  252  ARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNA  311

Query  332  DDRKNELAHLATHGPEN-----PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLW  386
            ++ + +   L+  G +         E    +L   +      + IIF + + +A  +   
Sbjct  312  NEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARR  371

Query  387  LQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLD  446
            +                 G   +  + ++    +  ++  F+ GT  +LV T+V   G+D
Sbjct  372  MTAD--------------GHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGID  417

Query  447  IPHCNVVVRYGLL------TNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEAL  499
            +   N+VV Y +        +  + +   GR  R  +   +       +    E +N A+
Sbjct  418  VSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKS--WEEMN-AI  474

Query  500  ETLMEQAVAAVQKMDQAEYQAKIRD  524
            +   ++ +  V   D  E +  +++
Sbjct  475  QEYFQRPITRVPTDDYEELEKVVKN  499


>sp|Q0UWC8|PRP28_PHANO Pre-mRNA-splicing ATP-dependent RNA helicase 
PRP28 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 
/ FGSC 10173) OX=321614 GN=PRP28 PE=3 SV=1
Length=746

 Score = 107 bits (268),  Expect = 5e-23, Method: Composition-based stats.
 Identities = 34/179 (19%), Positives = 77/179 (43%), Gaps = 20/179 (11%)

Query  341  LATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRA  400
                G E  K + L++IL    S   +P  I+F   +++  ++   ++            
Sbjct  573  EHIQGEEKRK-KRLQEILN---SGEFTPPIIVFVNIKRNCDAIARDIKN-----------  617

Query  401  QLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT  460
               +G  + +     TQ  ++  + + ++  +++LVAT +A  G+DI   ++VV + + T
Sbjct  618  ---MGFSSVTLHGSKTQEQREAALAQLREHRVDVLVATDLAGRGIDITDVSLVVNFNMAT  674

Query  461  NEISMVQARGR-ARADQSVYAFVA-TEGSRELKRELINEALETLMEQAVAAVQKMDQAE  517
            +  S     GR  RA +S  A         ++  +L     ++ + +    ++K + A+
Sbjct  675  SIESYTHRIGRTGRAGKSGVAITFWGNEDADVLYDLKQMLTKSQISKVPEDLRKHEAAQ  733


 Score = 53.3 bits (126),  Expect = 7e-06, Method: Composition-based stats.
 Identities = 25/140 (18%), Positives = 48/140 (34%), Gaps = 16/140 (11%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVD---------GAKVVVLVNRV  57
            Q   I  AL+ +++I    TG+GKT +       ++  +          G   +VL    
Sbjct  354  QRAAIPIALQCRDLIGVAVTGSGKTASFVLPLLVYISQLPPLGPSNRADGPYAIVLAPTR  413

Query  58   HLVTQHGEEFRRML--DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE  115
             L  Q  E   R       +    + G          +    +++I T   L   +    
Sbjct  414  EL-AQQIEVETRKFAAPLGFNTAVIVGGHSIEEQAFQMRDGAEIVIATPGRLVDCI----  468

Query  116  EEEHVELTVFSLIVVDECHH  135
            E   + L+  + +++DE   
Sbjct  469  ERRMLVLSQCTYVIMDEADR  488


>sp|Q4I830|DRS1_GIBZE ATP-dependent RNA helicase DRS1 OS=Gibberella 
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / 
NRRL 31084 / PH-1) OX=229533 GN=DRS1 PE=3 SV=2
Length=792

 Score = 107 bits (268),  Expect = 6e-23, Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 90/230 (39%), Gaps = 27/230 (12%)

Query  343  THGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL  402
              G E+ ++  L  + +  +      R IIF R ++ AH   +                 
Sbjct  481  RPGREDKRMGYLAHVCKNLYKE----RVIIFFRQKKDAHRARIIFG--------------  522

Query  403  LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE  462
            L+G   +     M Q  +   ++ F+DG +  L+AT +A  GLDI   + V+ Y    + 
Sbjct  523  LLGLSCAELHGSMNQTQRISSVEDFRDGKVAYLLATDLASRGLDIKGVDTVINYEAPQSL  582

Query  463  ISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA  520
               V   GR ARA +   A  +A E  R++ +  +        + A    +++D  E  A
Sbjct  583  DIYVHRVGRTARAGRKGVALTIAAESDRKVVKAAVKAGK---AQGAKIVSRQLDSGEVDA  639

Query  521  KIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQLLCINCMVAVGHGSDLR  570
                LQ              E ++++  + HV++        + H ++++
Sbjct  640  ----LQTQIDEMDDEIDEIMEEEKEEKQLAHVEMQVKKGENMIQHEAEIK  685


 Score = 56.0 bits (133),  Expect = 9e-07, Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 52/136 (38%), Gaps = 12/136 (9%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHL----ETVDGAKVVVLVNRVHLVTQ  62
            Q + I  AL GK+++    TG+GKT A        L    + +   +VVVL+    L  Q
Sbjct  283  QAKSIPIALMGKDVVGGAETGSGKTGAFILPILERLLYRPKKIPTTRVVVLLPTRELAIQ  342

Query  63   HGEE---FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
                        D ++T+    G +  +A    L    D++I T       + +      
Sbjct  343  CHAVATKLAAFTDIKFTLAV--GGLSLKAQELELKLRPDVIIATPGRFIDHMRNS---AS  397

Query  120  VELTVFSLIVVDECHH  135
              +    ++V+DE   
Sbjct  398  FSVDTVEILVLDEADR  413


>sp|Q84TG1|RH57_ARATH DEAD-box ATP-dependent RNA helicase 57 OS=Arabidopsis 
thaliana OX=3702 GN=RH57 PE=2 SV=1
Length=541

 Score = 106 bits (265),  Expect = 7e-23, Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 86/224 (38%), Gaps = 26/224 (12%)

Query  288  NDALLIHDTVRAVDAL--AALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG  345
            +D L     ++ +D +  A       R   + T     E    ++  D    +       
Sbjct  291  SDKLFEQSLLKQIDCVVKACSNPSIIRSLFSATLPDSVEELARSIMHDAVRVIIGRKNTA  350

Query  346  PENPKLEMLEK--------ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD  397
             E  K +++           L++ F+ S +P  +IF ++++ A  L         L+  +
Sbjct  351  SETVKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKEL------YDELKCEN  404

Query  398  IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG  457
            IRA ++         + +   +++  + +F+ G   +L+AT V   G+D    N V+ Y 
Sbjct  405  IRAGVI--------HSDLPPGERENAVDQFRAGEKWVLIATDVIARGMDFKGINCVINYD  456

Query  458  LLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEAL  499
               +  + +   GR  RA +S  A    TE      R + N  +
Sbjct  457  FPDSASAYIHRIGRSGRAGRSGEAITFYTEQDVPFLRNIANTMM  500


 Score = 60.2 bits (144),  Expect = 4e-08, Method: Composition-based stats.
 Identities = 32/129 (25%), Positives = 58/129 (45%), Gaps = 9/129 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT--RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHG  64
            Q + I   L G+      PTG+GKT       + K    + DG + V+L     L  Q  
Sbjct  168  QRQAIPILLSGRECFACAPTGSGKTFAFICPMLIKLKRPSTDGIRAVILSPARELAAQTA  227

Query  65   EEFRRMLDGR-WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELT  123
             E ++++ G  + +  ++  +   A F  L    D+LI T   L+ A+ + +    ++L+
Sbjct  228  REGKKLIKGSNFHIRLMTKPLVKTADFSKLW--CDVLISTPMRLKRAIKAKK----IDLS  281

Query  124  VFSLIVVDE  132
                +V+DE
Sbjct  282  KVEYLVLDE  290


>sp|Q12099|FAL1_YEAST ATP-dependent RNA helicase FAL1 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=FAL1 
PE=1 SV=1
Length=399

 Score = 104 bits (260),  Expect = 8e-23, Method: Composition-based stats.
 Identities = 52/335 (16%), Positives = 106/335 (32%), Gaps = 31/335 (9%)

Query  165  GLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRR  224
            G TA+   G    +D     +  L        I+SP            +    Y   +  
Sbjct  72   GKTATFTIGLLQAIDLRKKDLQAL--------ILSPTRELASQIGQVVKNLGDYMNVNAF  123

Query  225  SQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHL  284
            +      L   L        +    +      M ++Q+++      L   +   + +  L
Sbjct  124  AITGGKTLKDDLKKMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETL  183

Query  285  RRYNDALLIHDTVRAVDALAALQDFYHRE--HVTKTQILCAERRLLALFDDRKNELAHLA  342
                    I   +     +  +    +++   VT+  +    + L+   +     +    
Sbjct  184  GFKQQIYDIFAKLPKNCQVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYV  243

Query  343  TH-GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQ  401
             +   E  K + L  I    + S    + +IF  T++    L   L Q            
Sbjct  244  VNVDKEEWKFDTLCDI----YDSLTITQCVIFCNTKKKVDWLSQRLIQSN----------  289

Query  402  LLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN  461
                    S    M Q ++ +V+  F+ G   +L++T V   G+D+   ++V+ Y L   
Sbjct  290  ----FAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEI  345

Query  462  EISMVQARGR-ARADQSVYAF-VATEGSRELKREL  494
              + +   GR  R  +   A    T+      RE+
Sbjct  346  IENYIHRIGRSGRFGRKGVAINFITKADLAKLREI  380


 Score = 39.8 bits (91),  Expect = 0.078, Method: Composition-based stats.
 Identities = 19/130 (15%), Positives = 48/130 (37%), Gaps = 7/130 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q   I   + GK++I    +G GKT      + +         + ++L     L +Q G+
Sbjct  50   QSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQIGQ  109

Query  66   EFRRMLD-GRWTVTTLSGDMGPRAGFGHLAR-CHDLLICTAELLQMALTSPEEEEHVELT  123
              + + D        ++G    +     + +     +  T   +   +    +++ ++  
Sbjct  110  VVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQAVSGTPGRVLDMI----KKQMLQTR  165

Query  124  VFSLIVVDEC  133
               ++V+DE 
Sbjct  166  NVQMLVLDEA  175


>sp|A6ZXY5|FAL1_YEAS7 ATP-dependent RNA helicase FAL1 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=FAL1 PE=3 SV=1
Length=399

 Score = 104 bits (260),  Expect = 8e-23, Method: Composition-based stats.
 Identities = 52/335 (16%), Positives = 106/335 (32%), Gaps = 31/335 (9%)

Query  165  GLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRR  224
            G TA+   G    +D     +  L        I+SP            +    Y   +  
Sbjct  72   GKTATFTIGLLQAIDLRKKDLQAL--------ILSPTRELASQIGQVVKNLGDYMNVNAF  123

Query  225  SQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHL  284
            +      L   L        +    +      M ++Q+++      L   +   + +  L
Sbjct  124  AITGGKTLKDDLKKMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETL  183

Query  285  RRYNDALLIHDTVRAVDALAALQDFYHRE--HVTKTQILCAERRLLALFDDRKNELAHLA  342
                    I   +     +  +    +++   VT+  +    + L+   +     +    
Sbjct  184  GFKQQIYDIFAKLPKNCQVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYV  243

Query  343  TH-GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQ  401
             +   E  K + L  I    + S    + +IF  T++    L   L Q            
Sbjct  244  VNVDKEEWKFDTLCDI----YDSLTITQCVIFCNTKKKVDWLSQRLIQSN----------  289

Query  402  LLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN  461
                    S    M Q ++ +V+  F+ G   +L++T V   G+D+   ++V+ Y L   
Sbjct  290  ----FAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEI  345

Query  462  EISMVQARGR-ARADQSVYAF-VATEGSRELKREL  494
              + +   GR  R  +   A    T+      RE+
Sbjct  346  IENYIHRIGRSGRFGRKGVAINFITKADLAKLREI  380


 Score = 39.8 bits (91),  Expect = 0.078, Method: Composition-based stats.
 Identities = 19/130 (15%), Positives = 48/130 (37%), Gaps = 7/130 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q   I   + GK++I    +G GKT      + +         + ++L     L +Q G+
Sbjct  50   QSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQIGQ  109

Query  66   EFRRMLD-GRWTVTTLSGDMGPRAGFGHLAR-CHDLLICTAELLQMALTSPEEEEHVELT  123
              + + D        ++G    +     + +     +  T   +   +    +++ ++  
Sbjct  110  VVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQAVSGTPGRVLDMI----KKQMLQTR  165

Query  124  VFSLIVVDEC  133
               ++V+DE 
Sbjct  166  NVQMLVLDEA  175


>sp|A5DWJ1|FAL1_LODEL ATP-dependent RNA helicase FAL1 OS=Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=FAL1 PE=3 SV=1
Length=399

 Score = 104 bits (260),  Expect = 9e-23, Method: Composition-based stats.
 Identities = 43/322 (13%), Positives = 105/322 (33%), Gaps = 39/322 (12%)

Query  217  QYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEAAALAGL  274
            +   C      P  +L  ++ + I    +   +      G +     + +L +   +   
Sbjct  91   KSKECQALVLSPTRELATQIQNVIKHLGDYMNIQTYACIGGKNVGTDIKRLQQGQQIVSG  150

Query  275  QEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLL--ALFD  332
               RV  +  RR      I   +         + F  + +     +    + ++  A   
Sbjct  151  TPGRVLDVIKRRNLSTRHIKMLILDEADELFTKGFKEQIYEIYKHLPPGVQVVVVSATLT  210

Query  333  DRKNELAHLATHGPEN--------------------PKLEMLEKILQRQFSSSNSPRGII  372
                E+    T  P                       K +     L   + +    + +I
Sbjct  211  HEVLEMTGKFTTDPVKILVKREEVSLSGIKQYYIQCEKEDWKFDTLCDLYDNLTITQAVI  270

Query  373  FTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTL  432
            F  T+   + L   +++Q      +     + G         M Q ++  ++  F+ G  
Sbjct  271  FCNTKIKVNWLTDQMRKQ------NFTVVAMHG--------DMKQEERDAIMNDFRSGNS  316

Query  433  NLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELK  491
             +L++T V   G+D+   ++V+ Y L  ++ + +   GR  R  +   A      S  ++
Sbjct  317  RVLISTDVWARGIDVQQISLVINYDLPLDKENYIHRIGRSGRFGRKGTAINLLTKSDTIE  376

Query  492  RELINEALETLMEQAVAAVQKM  513
             + + +   T +++  + V  +
Sbjct  377  LKALEKYYSTKIKEMPSNVNDV  398


 Score = 47.9 bits (112),  Expect = 2e-04, Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 45/129 (35%), Gaps = 6/129 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG-AKVVVLVNRVHLVTQHGE  65
            Q   IM  + G++ I    +G GKT   +      L++     + +VL     L TQ   
Sbjct  53   QSRAIMQIISGRDTIAQAQSGTGKTATFSIGMLEVLDSKSKECQALVLSPTRELATQIQN  112

Query  66   EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
              + + D     T    G          L +   ++  T   +   +    +  ++    
Sbjct  113  VIKHLGDYMNIQTYACIGGKNVGTDIKRLQQGQQIVSGTPGRVLDVI----KRRNLSTRH  168

Query  125  FSLIVVDEC  133
              ++++DE 
Sbjct  169  IKMLILDEA  177


>sp|P0CR02|DBP8_CRYNJ ATP-dependent RNA helicase DBP8 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=DBP8 PE=3 SV=1
Length=619

 Score = 106 bits (265),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 79/193 (41%), Gaps = 19/193 (10%)

Query  359  QRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQR  418
            + +  + + P  +IFT+   +AH           L ++DI         +    +H+TQ 
Sbjct  430  KEEEDAPSVPSTVIFTQRCATAH------LLHLLLNSLDI--------PSVPLHSHLTQP  475

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQS  477
             +   + +F+   + +LV T V   GLDIP   +V+ +         V   GR ARA + 
Sbjct  476  QRLLSLARFRAHEVPVLVTTDVGSRGLDIPEVAMVINWDCPRRSDDYVHRVGRTARAGRG  535

Query  478  VYAF-VATEGSRELKR---ELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKR  533
              A  + TE   EL +   + +N  LE L       ++ +++     ++  ++       
Sbjct  536  GVAVTIITERDTELVKIIEDEVNVRLEELKLDEDKVLEGLNKVSLARRMATMEMHDSGFG  595

Query  534  AAQAAQRENQRQQ  546
              QA  +  Q ++
Sbjct  596  ERQATNKAKQIKR  608


 Score = 55.2 bits (131),  Expect = 2e-06, Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 49/131 (37%), Gaps = 3/131 (2%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q   + P L G++ I    TG+GKT A A  + +R      G   VVL     L  Q  E
Sbjct  179  QAACVEPILSGRDCIGGAKTGSGKTMAFALPIVERIARDPFGVWAVVLTPTRELAYQLSE  238

Query  66   EFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
            +F  +      T  T+ G M        L     +++ T   L   L         +L+ 
Sbjct  239  QFLVIGKPLGLTTATIVGGMDMMKQAQELEARPHIIVATPGRLCD-LLRSGGVGPGKLSR  297

Query  125  FSLIVVDECHH  135
               +V+DE   
Sbjct  298  VRTLVLDEADR  308


>sp|Q5R6D8|DDX46_PONAB Probable ATP-dependent RNA helicase DDX46 
OS=Pongo abelii OX=9601 GN=DDX46 PE=2 SV=1
Length=1032

 Score = 107 bits (267),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 43/152 (28%), Positives = 60/152 (39%), Gaps = 15/152 (10%)

Query  363  SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE  422
                S   IIF   ++ A  LL  L +             L G         + Q D+  
Sbjct  615  HYQESGSVIIFVDKQEHADGLLKDLMR------ASYPCMSLHG--------GIDQYDRDS  660

Query  423  VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF  481
            +I  F++GT  LLVATSVA  GLD+ H  +VV Y    +    V   GR  RA    YA+
Sbjct  661  IINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAY  720

Query  482  VATEGSRELKRELINEALETLMEQAVAAVQKM  513
                  +      I +ALE         ++K+
Sbjct  721  TFITEDQARYAGDIIKALELSGTAVPPDLEKL  752


 Score = 60.6 bits (145),  Expect = 4e-08, Method: Composition-based stats.
 Identities = 31/137 (23%), Positives = 54/137 (39%), Gaps = 10/137 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYV-AKRH------LETVDGAKVVVLVNRVHL  59
            Q + I   + G+++I    TG+GKT  A  +   RH      LE  +G   V++     L
Sbjct  399  QTQAIPAIMSGRDLIGIAKTGSGKT-IAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTREL  457

Query  60   VTQHGEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEE  118
              Q  +E ++        V  + G  G       L R  ++++CT   +   L +     
Sbjct  458  ALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGR-  516

Query  119  HVELTVFSLIVVDECHH  135
               L   + +V+DE   
Sbjct  517  VTNLRRVTYVVLDEADR  533


>sp|Q7L014|DDX46_HUMAN Probable ATP-dependent RNA helicase DDX46 
OS=Homo sapiens OX=9606 GN=DDX46 PE=1 SV=2
Length=1031

 Score = 107 bits (267),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 43/152 (28%), Positives = 60/152 (39%), Gaps = 15/152 (10%)

Query  363  SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE  422
                S   IIF   ++ A  LL  L +             L G         + Q D+  
Sbjct  615  HYQESGSVIIFVDKQEHADGLLKDLMR------ASYPCMSLHG--------GIDQYDRDS  660

Query  423  VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF  481
            +I  F++GT  LLVATSVA  GLD+ H  +VV Y    +    V   GR  RA    YA+
Sbjct  661  IINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAY  720

Query  482  VATEGSRELKRELINEALETLMEQAVAAVQKM  513
                  +      I +ALE         ++K+
Sbjct  721  TFITEDQARYAGDIIKALELSGTAVPPDLEKL  752


 Score = 60.6 bits (145),  Expect = 4e-08, Method: Composition-based stats.
 Identities = 31/137 (23%), Positives = 54/137 (39%), Gaps = 10/137 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYV-AKRH------LETVDGAKVVVLVNRVHL  59
            Q + I   + G+++I    TG+GKT  A  +   RH      LE  +G   V++     L
Sbjct  399  QTQAIPAIMSGRDLIGIAKTGSGKT-IAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTREL  457

Query  60   VTQHGEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEE  118
              Q  +E ++        V  + G  G       L R  ++++CT   +   L +     
Sbjct  458  ALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGR-  516

Query  119  HVELTVFSLIVVDECHH  135
               L   + +V+DE   
Sbjct  517  VTNLRRVTYVVLDEADR  533


>sp|P0CR03|DBP8_CRYNB ATP-dependent RNA helicase DBP8 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=DBP8 PE=3 SV=1
Length=619

 Score = 106 bits (265),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 78/192 (41%), Gaps = 19/192 (10%)

Query  360  RQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRD  419
             +  + + P  +IFT+   +AH           L ++DI         +    +H+TQ  
Sbjct  431  EEEDAPSVPSTVIFTQRCATAH------LLHLLLNSLDI--------PSVPLHSHLTQPQ  476

Query  420  QQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSV  478
            +   + +F+   + +LV T V   GLDIP   +V+ +         V   GR ARA +  
Sbjct  477  RLLSLARFRAHEVPVLVTTDVGSRGLDIPEVAMVINWDCPRRSDDYVHRVGRTARAGRGG  536

Query  479  YAF-VATEGSRELKR---ELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRA  534
             A  + TE   EL +   + +N  LE L       ++ +++     ++  ++        
Sbjct  537  VAVTIITERDTELVKIIEDEVNVRLEELKLDEDKVLEGLNKVSLARRMATMEMHDSGFGE  596

Query  535  AQAAQRENQRQQ  546
             QA  +  Q ++
Sbjct  597  RQATNKAKQIKR  608


 Score = 55.2 bits (131),  Expect = 2e-06, Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 49/131 (37%), Gaps = 3/131 (2%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q   + P L G++ I    TG+GKT A A  + +R      G   VVL     L  Q  E
Sbjct  179  QAACVEPILSGRDCIGGAKTGSGKTMAFALPIVERIARDPFGVWAVVLTPTRELAYQLSE  238

Query  66   EFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
            +F  +      T  T+ G M        L     +++ T   L   L         +L+ 
Sbjct  239  QFLVIGKPLGLTTATIVGGMDMMKQAQELEARPHIIVATPGRLCD-LLRSGGVGPGKLSR  297

Query  125  FSLIVVDECHH  135
               +V+DE   
Sbjct  298  VRTLVLDEADR  308


>sp|Q62780|DDX46_RAT Probable ATP-dependent RNA helicase DDX46 
OS=Rattus norvegicus OX=10116 GN=Ddx46 PE=1 SV=1
Length=1032

 Score = 107 bits (267),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 43/152 (28%), Positives = 60/152 (39%), Gaps = 15/152 (10%)

Query  363  SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE  422
                S   IIF   ++ A  LL  L +             L G         + Q D+  
Sbjct  615  HYQESGSVIIFVDKQEHADGLLKDLMR------ASYPCMSLHG--------GIDQYDRDS  660

Query  423  VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF  481
            +I  F++GT  LLVATSVA  GLD+ H  +VV Y    +    V   GR  RA    YA+
Sbjct  661  IINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAY  720

Query  482  VATEGSRELKRELINEALETLMEQAVAAVQKM  513
                  +      I +ALE         ++K+
Sbjct  721  TFITEDQARYAGDIIKALELSGTAVPPDLEKL  752


 Score = 60.6 bits (145),  Expect = 4e-08, Method: Composition-based stats.
 Identities = 31/137 (23%), Positives = 54/137 (39%), Gaps = 10/137 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYV-AKRH------LETVDGAKVVVLVNRVHL  59
            Q + I   + G+++I    TG+GKT  A  +   RH      LE  +G   V++     L
Sbjct  399  QTQAIPAIMSGRDLIGIAKTGSGKT-IAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTREL  457

Query  60   VTQHGEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEE  118
              Q  +E ++        V  + G  G       L R  ++++CT   +   L +     
Sbjct  458  ALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGR-  516

Query  119  HVELTVFSLIVVDECHH  135
               L   + +V+DE   
Sbjct  517  VTNLRRVTYVVLDEADR  533


>sp|Q569Z5|DDX46_MOUSE Probable ATP-dependent RNA helicase DDX46 
OS=Mus musculus OX=10090 GN=Ddx46 PE=1 SV=2
Length=1032

 Score = 107 bits (267),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 43/152 (28%), Positives = 60/152 (39%), Gaps = 15/152 (10%)

Query  363  SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE  422
                S   IIF   ++ A  LL  L +             L G         + Q D+  
Sbjct  615  HYQESGSVIIFVDKQEHADGLLKDLMR------ASYPCMSLHG--------GIDQYDRDS  660

Query  423  VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF  481
            +I  F++GT  LLVATSVA  GLD+ H  +VV Y    +    V   GR  RA    YA+
Sbjct  661  IINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAY  720

Query  482  VATEGSRELKRELINEALETLMEQAVAAVQKM  513
                  +      I +ALE         ++K+
Sbjct  721  TFITEDQARYAGDIIKALELSGTAVPPDLEKL  752


 Score = 60.6 bits (145),  Expect = 4e-08, Method: Composition-based stats.
 Identities = 31/137 (23%), Positives = 54/137 (39%), Gaps = 10/137 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYV-AKRH------LETVDGAKVVVLVNRVHL  59
            Q + I   + G+++I    TG+GKT  A  +   RH      LE  +G   V++     L
Sbjct  399  QTQAIPAIMSGRDLIGIAKTGSGKT-IAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTREL  457

Query  60   VTQHGEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEE  118
              Q  +E ++        V  + G  G       L R  ++++CT   +   L +     
Sbjct  458  ALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGR-  516

Query  119  HVELTVFSLIVVDECHH  135
               L   + +V+DE   
Sbjct  517  VTNLRRVTYVVLDEADR  533


>sp|Q9Y2R4|DDX52_HUMAN Probable ATP-dependent RNA helicase DDX52 
OS=Homo sapiens OX=9606 GN=DDX52 PE=1 SV=4
Length=599

 Score = 106 bits (264),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 33/167 (20%), Positives = 64/167 (38%), Gaps = 20/167 (12%)

Query  332  DDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQ  391
               +     L   G E  KL  + +++++ F    +P  ++F ++ + A  L        
Sbjct  381  SAVETVEQELLFVGSETGKLLAVRELVKKGF----NPPVLVFVQSIERAKEL--------  428

Query  392  GLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN  451
                      +  G          TQ+ +   +  F+ G + +L+ T++   G+D    N
Sbjct  429  ------FHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVN  482

Query  452  VVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELIN  496
            +V+ Y   T+ +  +   GR  RA     A    TE  + L R + N
Sbjct  483  LVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFFTEDDKPLLRSVAN  529


 Score = 52.5 bits (124),  Expect = 9e-06, Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 51/130 (39%), Gaps = 6/130 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA--KVVVLVNRVHLVTQHG  64
            Q + I   L G+ ++   PTG+GKT A +      L+       + +++     L +Q  
Sbjct  192  QMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIH  251

Query  65   EEFRRMLDGRWTVTTL--SGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
             E  ++ +G      +     +  +      ++  D+L+ T   L   L        ++L
Sbjct  252  RELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPP--GIDL  309

Query  123  TVFSLIVVDE  132
                 +VVDE
Sbjct  310  ASVEWLVVDE  319


>sp|Q0UCB9|DBP5_PHANO ATP-dependent RNA helicase DBP5 OS=Phaeosphaeria 
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) 
OX=321614 GN=DBP5 PE=3 SV=1
Length=471

 Score = 105 bits (261),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 70/197 (36%), Gaps = 25/197 (13%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K +     L + +        IIF RTR++A  L   +  +              G   +
Sbjct  286  KDQDKYSTLLKFYGLMTQASSIIFVRTRRTAEELERRMVAE--------------GHKVA  331

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT-------NE  462
              S  +  +D+  VI +F+ G   +L+ T+V   G+D+    +V+ Y + T       + 
Sbjct  332  QLSGALEGQDRDRVIDQFRSGEAKVLITTNVLARGIDVESVTMVINYDVPTMADGREADP  391

Query  463  ISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMD--QAEYQ  519
             + +   GR  R  +   A       +   ++L + A     +         D  +   Q
Sbjct  392  ETYLHRIGRTGRFGRVGVALTFV-HDKASWQQLHDIASYFKTDLHPIDTSDWDNVEEMIQ  450

Query  520  AKIRDLQQAALTKRAAQ  536
              I+  +    TK   +
Sbjct  451  KIIKSSRAGKSTKEMTE  467


 Score = 42.5 bits (98),  Expect = 0.014, Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 39/116 (34%), Gaps = 7/116 (6%)

Query  19   NIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGEEFRRMLDGRWTV  77
            N+I    +G GKT A +      ++      + + L     L  Q       M  G++  
Sbjct  105  NMIAQSQSGTGKTAAFSLNILSRIDLSRNEPQAIALAPSRELARQILGVITHM--GQFME  162

Query  78   TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC  133
               +    P     +      +L+ T   +Q  L        ++     ++V+DE 
Sbjct  163  GLKTMAAIPDPTKRNQRLDAHVLVGTPGTVQEQLKRRL----IKSDSIKILVLDEA  214


>sp|Q0E3X4|RH35A_ORYSJ DEAD-box ATP-dependent RNA helicase 35A 
OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0150100 PE=2 
SV=2
Length=627

 Score = 106 bits (264),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 65/165 (39%), Gaps = 20/165 (12%)

Query  347  ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA  406
            E+ ++  L + LQ+       P  ++F   +     +  +L              LL G 
Sbjct  418  EDARIIYLLECLQK-----TPPPVLVFCENKADVDYIHEYL--------------LLKGV  458

Query  407  GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV  466
               +      Q +++  I+ F++G  ++LVAT VA +GLD P    V+ Y +     + V
Sbjct  459  EAVAIHGGKDQEERENAIEFFKNGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYV  518

Query  467  QARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAV  510
               GR  R  ++  A      ++     L  + L    +Q +  V
Sbjct  519  HRIGRTGRCGKTGIATTFINKNQTETTLLDLKHLLKEAKQRIPPV  563


 Score = 44.8 bits (104),  Expect = 0.003, Method: Composition-based stats.
 Identities = 23/145 (16%), Positives = 47/145 (32%), Gaps = 20/145 (14%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAY-VAKRHLETVDGAKVV--------VLVNRV  57
            Q + +   L G+++I    TG+GKT      +    L+      +V        ++    
Sbjct  209  QVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPLIMVALQEEMMMPIVPGEGPFGMIICPSR  268

Query  58   HLVTQHGEEFRRMLDGRWTVT-------TLSGDMGPRAGFGHLARCHDLLICTAELLQMA  110
             L  Q  +   + L                 G +  RA    + +   +++ T   L+  
Sbjct  269  ELAKQTYDVIEQFLVPLKEAGYPEIRPLLCIGGVDMRAQLDVVKKGVHIVVATPGRLKDL  328

Query  111  LTSPEEEEHVELTVFSLIVVDECHH  135
            L   +    + L     + +DE   
Sbjct  329  LAKKK----MNLDNCRYLTLDEADR  349


>sp|Q9C8J1|RH34_ARATH DEAD-box ATP-dependent RNA helicase 34 OS=Arabidopsis 
thaliana OX=3702 GN=RH34 PE=2 SV=2
Length=392

 Score = 104 bits (258),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 51/139 (37%), Gaps = 15/139 (11%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K E     L   +      + IIF  TRQ    L   ++    +               S
Sbjct  244  KEEWKFDTLCDLYGRLTINQAIIFCNTRQKVDWLTEKMRSSNFIV--------------S  289

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
            S      Q+++ +++ +F+     +L+A+ V   G+D+   + V+ Y +  N    +   
Sbjct  290  SMHGDKRQKERDDIMNQFRSFKSRVLIASDVWARGIDVQTVSHVINYDIPNNPELYIHRI  349

Query  470  GRARA-DQSVYAFVATEGS  487
            GRA    +   A    + S
Sbjct  350  GRAGRFGREGVAINFVKSS  368


 Score = 50.6 bits (119),  Expect = 3e-05, Method: Composition-based stats.
 Identities = 24/128 (19%), Positives = 47/128 (37%), Gaps = 6/128 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT-RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q   ++P L+G+++I    +G GKT   A  V +    +    +V+VL     L +Q  +
Sbjct  49   QQRALVPILKGRDVIAQAQSGTGKTSMIAISVCQIVNISSRKVQVLVLSPSRELASQTEK  108

Query  66   EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
              + +            G          L R    +  T   +   +    +   ++   
Sbjct  109  TIQAIGAHTNIQAHACIGGKSIGEDIKKLERGVHAVSGTPGRVYDMI----KRGSLQTKA  164

Query  125  FSLIVVDE  132
              L+V+DE
Sbjct  165  VKLLVLDE  172


>sp|Q6BPT8|DBP6_DEBHA ATP-dependent RNA helicase DBP6 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / 
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DBP6 PE=3 SV=2
Length=576

 Score = 106 bits (263),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 56/296 (19%), Positives = 111/296 (38%), Gaps = 23/296 (8%)

Query  248  ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQ  307
            + + +   Q ++     L          ++R  +   +     ++   T+       +L 
Sbjct  292  DEADRLLNQSFQNWCQILISKIDEFTNIKERNISNSWKLNVQKMIFSATLTTDAGKLSLL  351

Query  308  DFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNS  367
             F+    +    +   E+ +  +F             G     L+ L  IL +   S N 
Sbjct  352  KFHKPRLII---VNNKEQLVNEMFSLPATLNEFKLQFGSAKSSLKPL--ILSKFLLSKNK  406

Query  368  -PRGIIFTRTRQSAHSLLLWLQQQ-QGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQ  425
                +IFT++  ++  L   L      L +  I    +    N       T   + ++++
Sbjct  407  LANVLIFTKSNDASLRLSRLLSLIMNKLGSETINIAYINSTNN-------TTSVRSKILK  459

Query  426  KFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVAT  484
             F   T+N+LVAT +   G+DI     V+ Y L  +    V   GR ARA+Q  +A+   
Sbjct  460  DFSKQTINILVATDLIARGIDILSITDVINYDLPNSSREYVHRVGRTARANQEGFAYNFC  519

Query  485  EGSRELK--RELINEA------LETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTK  532
             G  E K  ++L+ +       +E L       ++  D++ Y+  + +LQQ    +
Sbjct  520  FGKGEAKWFKKLMAQVGRSEKNIEELELDTKQLIEDNDESMYKESLDELQQQVFNR  575


 Score = 62.5 bits (150),  Expect = 8e-09, Method: Composition-based stats.
 Identities = 25/120 (21%), Positives = 50/120 (42%), Gaps = 8/120 (7%)

Query  20   IIIWLPTGAGKTRAAAYVAKRHLE--TVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRW-T  76
            +++   TG+GKT A +      L+   V   + ++LV    L+ Q      ++  G   +
Sbjct  181  LLVNASTGSGKTLAYSIPIIESLQTVKVPRVRAIILVPTKPLINQVKTTLNQLSKGTNLS  240

Query  77   VTTLSGDMGPRAGFGHLARCH-DLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH  135
            + +L  D+  +     L     D+++ T   L   LT+     ++ L     +V+DE   
Sbjct  241  IVSLKNDLSIKEEGIKLQTNEPDIIVSTPGRLVDHLTN----GYISLKNLQYLVIDEADR  296


>sp|Q9Y7T7|PRP28_SCHPO Pre-mRNA-splicing ATP-dependent RNA helicase 
prp28 OS=Schizosaccharomyces pombe (strain 972 / ATCC 
24843) OX=284812 GN=prp28 PE=3 SV=1
Length=662

 Score = 106 bits (264),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 67/147 (46%), Gaps = 18/147 (12%)

Query  338  LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD  397
               +     ++ K   +E+IL+   S+  SP  IIF   +++  ++       + L  + 
Sbjct  490  EQRVEMISDDSKKWRRVEEILE---SNRFSPPIIIFVNLKRNIEAIA------KQLNAIG  540

Query  398  IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG  457
              A  L G+         +Q  ++  I++ ++ T ++LVAT +A  G+DIP+ ++V+ Y 
Sbjct  541  WHAVTLHGSK--------SQEQRERAIEQLRNKTADILVATDIAGRGIDIPNVSLVLNYN  592

Query  458  LLTNEISMVQARGR-ARADQSVYAFVA  483
            +  +        GR  RA +S  A   
Sbjct  593  MAKSIEDYTHRIGRTGRAGKSGTAITF  619


 Score = 50.6 bits (119),  Expect = 4e-05, Method: Composition-based stats.
 Identities = 25/132 (19%), Positives = 45/132 (34%), Gaps = 16/132 (12%)

Query  15   LEGKNIIIWLPTGAGKT--RAAAYVAKRHLETVD--------GAKVVVLVNRVHLVTQ-H  63
            L+ K++I    TG+GKT       +     +           G   VVL     L  Q  
Sbjct  284  LQRKDLIGIAETGSGKTAAFI-IPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQ  342

Query  64   GEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELT  123
             E  +      +   ++ G          +++   +++ T   L   L   E    V L+
Sbjct  343  VEGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQGAHIVVATPGRLLDCL---ERRLFV-LS  398

Query  124  VFSLIVVDECHH  135
              + +V+DE   
Sbjct  399  QCTYVVMDEADR  410


>sp|Q0CNX1|DBP8_ASPTN ATP-dependent RNA helicase dbp8 OS=Aspergillus 
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=dbp8 
PE=3 SV=1
Length=527

 Score = 105 bits (262),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 65/387 (17%), Positives = 120/387 (31%), Gaps = 34/387 (9%)

Query  163  VLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYN---  219
            +  +  +P    A ++      +     ++    I    +  PQ    SQ+P        
Sbjct  155  IFAVVLTPTRELALQIYEQFKAISA-PQSMKPVLITGGTDMRPQALALSQRPHVVIATPG  213

Query  220  LCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRV  279
                  Q    D ++ L       L+  +     G       V     A   +  ++  +
Sbjct  214  RLADHIQTSGEDTVRGLKRVRMVVLDEADRLLAPGPGSMLPDVETCLSALPPSSERQTLL  273

Query  280  YALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELA  339
            +   +     AL            A+ +       +       A     A        L 
Sbjct  274  FTATVTPEVRAL-------KSMPRASTKPPVFVTEIEAGGTTSAGADGAAPKSTLPPTLK  326

Query  340  HLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIR  399
                  P   +   L  +L      +     IIF    ++A               +  R
Sbjct  327  QTYLKVPMTHREAFLHVLLST--DGNAGKPAIIFCNHTKTAD--------------LLER  370

Query  400  AQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL  459
                +    +S  + + Q ++   + +F+     +LVAT VA  GLDIP   +VV Y + 
Sbjct  371  LLRRLAHRVTSLHSLLPQSERSSNLARFRASAARILVATDVASRGLDIPSVALVVNYDVP  430

Query  460  TNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEY  518
             N    V   GR ARA +   A     G R+++  L   A+E  + + +    +   +  
Sbjct  431  RNPDDYVHRVGRTARAGRRGEAVTLV-GQRDVQLVL---AIEERVGRQMEEWSEEGVSVE  486

Query  519  QAKIRD--LQQAALTKRAAQAAQRENQ  543
               +R   L++    KR A     E +
Sbjct  487  GRVVRTGVLKEVGSAKREALIEIEEGR  513


 Score = 59.4 bits (142),  Expect = 6e-08, Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 2/123 (2%)

Query  15   LEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDG  73
            L+G++ I    TG+GKT A A  + ++  E   G   VVL     L  Q  E+F+ +   
Sbjct  121  LKGRDCIGGSRTGSGKTIAFAVPILQKWAEDPFGIFAVVLTPTRELALQIYEQFKAISAP  180

Query  74   RWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDE  132
            +      ++G    R     L++   ++I T   L   + +  E+    L    ++V+DE
Sbjct  181  QSMKPVLITGGTDMRPQALALSQRPHVVIATPGRLADHIQTSGEDTVRGLKRVRMVVLDE  240

Query  133  CHH  135
               
Sbjct  241  ADR  243


>sp|Q99PT0|DDX52_RAT Probable ATP-dependent RNA helicase DDX52 
OS=Rattus norvegicus OX=10116 GN=Ddx52 PE=2 SV=1
Length=598

 Score = 105 bits (262),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 33/167 (20%), Positives = 64/167 (38%), Gaps = 20/167 (12%)

Query  332  DDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQ  391
               +     L   G E  KL  + +++++ F    +P  ++F ++ + A  L        
Sbjct  382  SAVETVEQELLFVGSETGKLLAMRELVKKGF----NPPVLVFVQSIERAKEL--------  429

Query  392  GLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN  451
                      +  G          TQ+ +   +  F+ G + +L+ T++   G+D    N
Sbjct  430  ------FHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVN  483

Query  452  VVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELIN  496
            +V+ Y   T+ +  +   GR  RA     A    TE  + L R + N
Sbjct  484  LVINYDFPTSSVEYIHRIGRTGRAGNRGKAVTFFTEDDKPLLRSVAN  530


 Score = 56.0 bits (133),  Expect = 1e-06, Method: Composition-based stats.
 Identities = 42/212 (20%), Positives = 74/212 (35%), Gaps = 19/212 (9%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA--KVVVLVNRVHLVTQHG  64
            Q + I   L G+ ++   PTG+GKT A +      L+       + +V+     L +Q  
Sbjct  193  QMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPTNKGFRALVISPTRELASQIH  252

Query  65   EEFRRMLDGRWTVTTL--SGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
             E  ++ +G      +     +  +      ++  D+L+ T   L   L   +E   ++L
Sbjct  253  RELIKISEGTGFRIHMIHKAAIAAKKFGPKSSKKFDILVTTPNRLIYLL--KQEPPGIDL  310

Query  123  TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAI  182
            T    +VVDE                + + K      L  +     SP    A       
Sbjct  311  TSVEWLVVDES------------DKLFEDGKTGFRDQLASIFLACTSPKVRRAMFSATFA  358

Query  183  NHVLQLCA-NLDTWCIMSPQNCCPQLQEHSQQ  213
              V Q C  NLD    +S       ++   Q+
Sbjct  359  YDVEQWCKLNLDNIVSVSIGARNSAVETVEQE  390


>sp|Q75BS4|DHH1_EREGS ATP-dependent RNA helicase DHH1 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=DHH1 PE=3 SV=1
Length=484

 Score = 104 bits (259),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 51/327 (16%), Positives = 108/327 (33%), Gaps = 25/327 (8%)

Query  230  GDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND  289
            G  L+  + ++++ + +   +      +  ++V  LSE +     +  ++ +   +   +
Sbjct  134  GTNLRDDIMRLNEPVHVLVGTPGRVLDLASRKVADLSECSLFVMDEADKMLSRDFKSLVE  193

Query  290  ALLIH-DTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPEN  348
             +L            +A      +E + K   L     +  + +     +        E 
Sbjct  194  QILSFLPQNHQSLLFSATFPLTVKEFMVK--HLNKPYEINLMDELTLKGITQYYAFVEER  251

Query  349  PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN  408
             KL      L   FS     + IIF  +      L   +                +G   
Sbjct  252  QKL----HCLNTLFSKLQINQAIIFCNSTNRVELLAKKITD--------------LGYSC  293

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
                  M Q+++ +V  +F+ G +  LV + +   G+DI   NVV+ +       + +  
Sbjct  294  YYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHR  353

Query  469  RGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQ  527
             GR  R      A      +    R  + +  + L  +  A   ++D++ Y A+      
Sbjct  354  IGRSGRFGHLGLAINLINWN---DRFNLYKIEQELGTEIAAIPAQIDKSLYVAEDTSAVP  410

Query  528  AALTKRAAQAAQRENQRQQFPVEHVQL  554
                    Q   R  Q+   P +  QL
Sbjct  411  VPFPLDTMQGNARAAQQMPHPQQQAQL  437


 Score = 52.1 bits (123),  Expect = 1e-05, Method: Composition-based stats.
 Identities = 27/129 (21%), Positives = 48/129 (37%), Gaps = 6/129 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLE-TVDGAKVVVLVNRVHLVTQHGE  65
            Q E I  AL  ++I+     G GKT A        ++  V+  + +++V    L  Q  +
Sbjct  56   QEEAIPIALARRDILARAKNGTGKTAAFVIPTLEIVKPKVNKIQALIMVPTRELALQTSQ  115

Query  66   EFRRMLDGRWTVTTL-SGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
              R +         + +G    R     L     +L+ T   +          +  +L+ 
Sbjct  116  VVRTLGKHCGISCMVTTGGTNLRDDIMRLNEPVHVLVGTPGRVLD----LASRKVADLSE  171

Query  125  FSLIVVDEC  133
             SL V+DE 
Sbjct  172  CSLFVMDEA  180


>sp|Q4P7Z8|DBP5_USTMA ATP-dependent RNA helicase DBP5 OS=Ustilago 
maydis (strain 521 / FGSC 9021) OX=237631 GN=DBP5 PE=3 SV=1
Length=456

 Score = 104 bits (258),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 30/179 (17%), Positives = 65/179 (36%), Gaps = 24/179 (13%)

Query  353  MLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQS  412
               ++L   ++     + IIF   R++A  +   + Q+              G    S  
Sbjct  288  HKYEVLVELYNLLTIGQSIIFCAKRETADRIAQKMTQE--------------GHKVDSLH  333

Query  413  THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL------TNEISMV  466
              +   D+   I  F+DG   +L++T+V   G+DI    +V+ Y +        +  + +
Sbjct  334  GRLETADRDRTIDAFRDGKSKVLISTNVIARGIDIQQVTLVINYDMPLTQTGEADAETYL  393

Query  467  QARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD  524
               GR  R  +   +       +        + +E  ++  +  V   D  E +  I++
Sbjct  394  HRIGRTGRFGRKGVSINFVHDQQSWS---YMDQIEKALKCQITRVATNDLEEMEYTIKE  449


>sp|A6SBT4|DBP5_BOTFB ATP-dependent RNA helicase dbp5 OS=Botryotinia 
fuckeliana (strain B05.10) OX=332648 GN=dbp5 PE=3 SV=2
Length=470

 Score = 104 bits (259),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 107/301 (36%), Gaps = 46/301 (15%)

Query  246  MPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRY--NDALLIHDTVRAVDAL  303
            + +L ++      + +++ L EA  +   Q      + ++     + +L+       +  
Sbjct  198  VMDLIKRRSIDASQMKILCLDEADNMLDQQGLGDQCMRVKSMIRVEQILLFSATFPDEVY  257

Query  304  AALQDFYHREHVTKTQILCAERRLL-ALFDDRKNELAHLATHGPENPKLEMLEKILQRQF  362
               QDF  R +  K +        +  +F D  NE+                 +IL + +
Sbjct  258  GFAQDFSPRANEIKLKRDELTVSGIKQMFMDCPNEVGK--------------YEILVKLY  303

Query  363  SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE  422
                    IIF + R +A ++   L ++              G   ++        ++ +
Sbjct  304  GLMTIGSSIIFVKRRDTASNIAERLTKE--------------GHKVAAVHGAFEGSERDQ  349

Query  423  VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL--------TNEISMVQARGR-AR  473
            V++ F+ G   +L+ T+V   G+D+   ++V+ Y +          +  + +   GR  R
Sbjct  350  VLEDFRQGKAKVLITTNVLARGIDVQSVSMVINYDVPMKGRSDSEPDPETYLHRIGRTGR  409

Query  474  ADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKR  533
              +   +       +        +AL  +       + K++Q ++      +++   + R
Sbjct  410  FGRVGVSISFVFDRKS------YDALNQIANHYNIDLIKLNQDDWDETEEIVKKVIKSSR  463

Query  534  A  534
            A
Sbjct  464  A  464


>sp|Q2UQI6|DRS1_ASPOR ATP-dependent RNA helicase drs1 OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=drs1 
PE=3 SV=2
Length=820

 Score = 106 bits (263),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 83/201 (41%), Gaps = 20/201 (10%)

Query  343  THGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL  402
              G E+ +L  L  + +  ++     R I+F R ++ AH + +                 
Sbjct  527  RPGREDKRLGYLLHLCKEVYTG----RVIVFFRQKKEAHRVRIAFG--------------  568

Query  403  LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE  462
            L+G   +     M+Q  +   ++ F++G ++ L+AT +A  GLDI     V+ Y    + 
Sbjct  569  LLGLKAAELHGSMSQEQRIRSVENFREGKVSFLLATDLAARGLDIKGVETVINYEAPQSH  628

Query  463  ISMVQARGR-ARADQSVYA-FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA  520
               +   GR ARA +S  A  +A E  R++ +  +  +     + A   V       +  
Sbjct  629  EIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAAVKASKAQGAKVASRVVDPAVADRWAQ  688

Query  521  KIRDLQQAALTKRAAQAAQRE  541
            K +DL++        +  +++
Sbjct  689  KAKDLEEEINAVLEEEKIEKQ  709


 Score = 51.7 bits (122),  Expect = 2e-05, Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 48/136 (35%), Gaps = 12/136 (9%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHL----ETVDGAKVVVLVNRVHLVTQ  62
            Q + I  AL GK+I+    TG+GKT A        L      V  ++V +L+    L  Q
Sbjct  329  QRKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLLFRPRKVPTSRVAILMPTRELAVQ  388

Query  63   HGEE---FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
                        D  +    L G    R     L +  D++I T       + +      
Sbjct  389  CYNVATKLATYTDITF--CQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNS---AS  443

Query  120  VELTVFSLIVVDECHH  135
              +    ++V+DE   
Sbjct  444  FTVDTLEILVLDEADR  459


>sp|P0CQ72|FAL1_CRYNJ ATP-dependent RNA helicase FAL1 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=FAL1 PE=3 SV=1
Length=396

 Score = 103 bits (256),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 28/149 (19%), Positives = 58/149 (39%), Gaps = 16/149 (11%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K +     L   + +    + +IF  TR+    L   +++                   S
Sbjct  245  KEDWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTEKMREAN--------------FTVS  290

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
            S    M Q+++  ++ +F+ G   +L+ T V   G+D+   ++V+ Y L T+  + +   
Sbjct  291  SMHGEMVQKERDAIMAEFRGGQSRVLITTDVWARGIDVQQVSLVINYDLPTSRENYLHRI  350

Query  470  GR-ARADQSVYAF-VATEGSRELKRELIN  496
            GR  R  +   A    T     + R++  
Sbjct  351  GRSGRFGRKGVAINFVTVDDVRILRDIEQ  379


 Score = 43.6 bits (101),  Expect = 0.005, Method: Composition-based stats.
 Identities = 19/128 (15%), Positives = 42/128 (33%), Gaps = 6/128 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q   I+P + G+++I    +G GKT   +  + +     +   + +VL     L  Q   
Sbjct  50   QQRAIIPIIRGRDVIAQAQSGTGKTATFSISMLQSIDTNLRETQALVLSPTRELAVQIQT  109

Query  66   EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
                + D          G          L     ++  T   +   +       ++    
Sbjct  110  VVLALGDYMNVSCHACIGGTSVGEDIRKLEAGQQVVSGTPGRVFDMI----RRRNLRTKD  165

Query  125  FSLIVVDE  132
              ++++DE
Sbjct  166  IKMLILDE  173


>sp|P0CQ73|FAL1_CRYNB ATP-dependent RNA helicase FAL1 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=FAL1 PE=3 SV=1
Length=396

 Score = 103 bits (256),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 28/149 (19%), Positives = 58/149 (39%), Gaps = 16/149 (11%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K +     L   + +    + +IF  TR+    L   +++                   S
Sbjct  245  KEDWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTEKMREAN--------------FTVS  290

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
            S    M Q+++  ++ +F+ G   +L+ T V   G+D+   ++V+ Y L T+  + +   
Sbjct  291  SMHGEMVQKERDAIMAEFRGGQSRVLITTDVWARGIDVQQVSLVINYDLPTSRENYLHRI  350

Query  470  GR-ARADQSVYAF-VATEGSRELKRELIN  496
            GR  R  +   A    T     + R++  
Sbjct  351  GRSGRFGRKGVAINFVTVDDVRILRDIEQ  379


 Score = 43.6 bits (101),  Expect = 0.005, Method: Composition-based stats.
 Identities = 19/128 (15%), Positives = 42/128 (33%), Gaps = 6/128 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q   I+P + G+++I    +G GKT   +  + +     +   + +VL     L  Q   
Sbjct  50   QQRAIIPIIRGRDVIAQAQSGTGKTATFSISMLQSIDTNLRETQALVLSPTRELAVQIQT  109

Query  66   EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
                + D          G          L     ++  T   +   +       ++    
Sbjct  110  VVLALGDYMNVSCHACIGGTSVGEDIRKLEAGQQVVSGTPGRVFDMI----RRRNLRTKD  165

Query  125  FSLIVVDE  132
              ++++DE
Sbjct  166  IKMLILDE  173


>sp|Q41382|RH7_SPIOL DEAD-box ATP-dependent RNA helicase 7 OS=Spinacia 
oleracea OX=3562 GN=RH7 PE=2 SV=1
Length=685

 Score = 105 bits (262),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 47/212 (22%), Positives = 79/212 (37%), Gaps = 30/212 (14%)

Query  365  SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI  424
             +  R IIFT T++SA  L   L                   G       + Q  ++  +
Sbjct  359  GSGGRSIIFTETKESASQLAGLLT------------------GARPLHGDIQQTQREVTL  400

Query  425  QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVA  483
            + F+ G    LVAT+VA  GLDI    ++++     +    +   GR  RA  +  A + 
Sbjct  401  KGFRTGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEDYIHRSGRTGRAGNTGVAVML  460

Query  484  TEGSRELKRELINEA---LETLMEQAVAAVQKMDQAEYQAKIRDLQQAALT--KRAAQAA  538
             +  R    ++  E+    E L       V K    E  A I  +  + +   K AA+  
Sbjct  461  YDPKRSSVTKIERESGVKFEHLSAPQPVDVAKAVGIEAAAAILQISDSVIPAFKDAAEEL  520

Query  539  QRENQRQQFPVEHVQLLCINCMVAVGHGSDLR  570
               +      +  V +L      A G+ SD++
Sbjct  521  LSTSG-----LSAVDILSKALAKAAGY-SDIK  546


 Score = 41.7 bits (96),  Expect = 0.027, Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 50/139 (36%), Gaps = 22/139 (16%)

Query  13   PALEGKNIIIWLP------TGAGKTRAAAYVAKRHL---ETVDGAK--------VVVLVN  55
             A+   N+I          TG GKT A        L    T D  +        V+VL+ 
Sbjct  134  QAMTFDNVIDGCDLVGRARTGQGKTLAFVLPIVESLVNGRTKDLRRSGHGRLPSVLVLLP  193

Query  56   RVHLVTQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP  114
               L TQ   +F+        T  ++ G     +    L R  D+++ T   ++  L   
Sbjct  194  TRELATQVLADFQVYGGAVGLTACSVYGGAPFHSQISSLTRGVDIVVGTPGRVKDLL---  250

Query  115  EEEEHVELTVFSLIVVDEC  133
             E+  ++L      V+DE 
Sbjct  251  -EKGVLKLGSLLFRVLDEA  268


>sp|Q93ZG7|RH38_ARATH DEAD-box ATP-dependent RNA helicase 38 OS=Arabidopsis 
thaliana OX=3702 GN=RH38 PE=1 SV=2
Length=496

 Score = 104 bits (259),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 38/185 (21%), Positives = 80/185 (43%), Gaps = 24/185 (13%)

Query  349  PKLEMLEKILQRQF-SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG  407
            PK +   ++++ Q     +  + IIF +T+ SA  +   L +              +G  
Sbjct  321  PKEQNKIEVIKDQIMELGDIGQTIIFVKTKASAQKVHKALAE--------------MGYD  366

Query  408  NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT-------  460
             +S   ++T+ D+ +++++F++    +L+AT V   G D    N+VV Y L T       
Sbjct  367  VTSVHGNLTESDRDKIVKEFKECLTQVLIATDVIARGFDQQRVNLVVNYNLPTKYETGEP  426

Query  461  NEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMD-QAEYQ  519
            +    +   GRA       A           +E++ E +E   E  V  ++  + + EY+
Sbjct  427  DYEVYLHRVGRAGRFGRKGAVFNLLLDDGWDKEVM-EKIEKYFEANVKEIKSWNSEEEYK  485

Query  520  AKIRD  524
            + +++
Sbjct  486  SALKE  490


 Score = 49.8 bits (117),  Expect = 7e-05, Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 56/161 (35%), Gaps = 19/161 (12%)

Query  18   KNIIIWLPTGAGKTRAAAYVAKRHLE-TVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWT  76
            K++I     G+GKT          ++ T+   + + +     L  Q+ E  ++M      
Sbjct  132  KHLIAQAHNGSGKTTCFVLGMLSRVDPTLREPQALCICPTRELANQNMEVLQKMGKFTGI  191

Query  77   VTTL----SGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDE  132
               L    S    P A  G     H ++I T   L+  +        + L    ++V DE
Sbjct  192  TAELAVPDSTRGAPAATRGAPVSAH-VVIGTPGTLKKWMAFKR----LGLNHLKILVFDE  246

Query  133  CHHTHKDTVYN----VIMSQYLELKLQRAQPLPQVLGLTAS  169
              H      +      IM       + R  P  QVL  +A+
Sbjct  247  ADHMLATDGFRDDSLKIMKD-----IGRVNPNFQVLLFSAT  282


>sp|A6RUH2|DRS1_BOTFB ATP-dependent RNA helicase drs1 OS=Botryotinia 
fuckeliana (strain B05.10) OX=332648 GN=drs1 PE=3 SV=1
Length=801

 Score = 105 bits (262),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 75/185 (41%), Gaps = 20/185 (11%)

Query  343  THGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL  402
              G E  ++  L  +    ++     R I+F R ++ AH   +                 
Sbjct  493  RPGREGKRMGYLLYLCANVYTD----RVIVFFRQKKEAHRARIIFG--------------  534

Query  403  LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE  462
            L G   +     M+Q  + + ++ F+DG  + L+AT +A  GLDI   + V+ Y    + 
Sbjct  535  LSGLKATELHGSMSQEQRIKSVEAFRDGKASFLLATDLASRGLDIKGVDTVINYEAPQSH  594

Query  463  ISMVQARGR-ARADQSVYA-FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA  520
               +   GR ARA +S  A  +A E  R++ +  +  +     +     ++  +   +  
Sbjct  595  DIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAAVKASRTQGAKVVSRVIEASEADSWSE  654

Query  521  KIRDL  525
            K+ ++
Sbjct  655  KVDEM  659


 Score = 51.0 bits (120),  Expect = 4e-05, Method: Composition-based stats.
 Identities = 27/136 (20%), Positives = 50/136 (37%), Gaps = 12/136 (9%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHL----ETVDGAKVVVLVNRVHLVTQ  62
            Q + I  AL GK+++    TG+GKT A        L    + V  ++V +L+    L  Q
Sbjct  295  QSKTIPVALLGKDVVGGAVTGSGKTAAFVVPVLERLLYRPKKVPTSRVAILMPTRELAIQ  354

Query  63   HGEE---FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
                        D ++ +    G +  +     L    D++I T       + +      
Sbjct  355  CHAVATKLASHTDIKFCLAV--GGLSLKVQEAELRLRPDVIIATPGRFIDHMRNSPS---  409

Query  120  VELTVFSLIVVDECHH  135
              +    ++V+DE   
Sbjct  410  FTVDTLEILVLDEADR  425


>sp|Q86TM3|DDX53_HUMAN Probable ATP-dependent RNA helicase DDX53 
OS=Homo sapiens OX=9606 GN=DDX53 PE=1 SV=3
Length=631

 Score = 105 bits (261),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 73/197 (37%), Gaps = 25/197 (13%)

Query  352  EMLEKILQRQF--SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            E  ++ L ++F  + S + + I+F   +  A  L              I A+ L G    
Sbjct  450  EKEKRALTQEFVENMSPNDKVIMFVSQKHIADDLSS------DFNIQGISAESLHGNS--  501

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA-  468
                   Q DQ+  ++ F+ G + +L+ T +   GLD+     V  Y    N    V   
Sbjct  502  ------EQSDQERAVEDFKSGNIKILITTDIVSRGLDLNDVTHVYNYDFPRNIDVYVHRV  555

Query  469  --RGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQ  526
               GR     +    +    S+ +  ELI      ++++A  +V +      +    + Q
Sbjct  556  GYIGRTGKTGTSVTLITQRDSK-MAGELI-----KILDRANQSVPEDLVVMAEQYKLNQQ  609

Query  527  QAALTKRAAQAAQRENQ  543
            +     R+ +  QR  +
Sbjct  610  KRHRETRSRKPGQRRKE  626


 Score = 58.3 bits (139),  Expect = 2e-07, Method: Composition-based stats.
 Identities = 54/350 (15%), Positives = 115/350 (33%), Gaps = 26/350 (7%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK-------VVVLVNRVHLVTQHGEEF  67
            L+G ++I+   TG GKT +       HL++   ++       ++VL     L      E 
Sbjct  257  LQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAEC  316

Query  68   RRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSL  127
             +          + G          +++  D++I T   L       +    V L   + 
Sbjct  317  SKYSYKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLND----LQMNNSVNLRSITY  372

Query  128  IVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLT-AS-PGTGGASKLDGAINHV  185
            +V+DE            I    L+++  R         +T A+ P T     L    + +
Sbjct  373  LVIDEADKMLDMEFEPQIRKILLDVRPDRQTV------MTSATWPDTVRQLALSYLKDPM  426

Query  186  LQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKK--LMDQIHDH  243
            +    NL+   + + +       E  ++   Q  + +    D     + +  + D +   
Sbjct  427  IVYVGNLNLVAVNTVKQNIIVTTEKEKRALTQEFVENMSPNDKVIMFVSQKHIADDLSSD  486

Query  244  LEMPELSRKFGTQMYEQ----QVVKLSEAAALAGLQEQRVYALHL-RRYNDALLIHDTVR  298
              +  +S +      EQ    + V+  ++  +  L    + +  L       +  +D  R
Sbjct  487  FNIQGISAESLHGNSEQSDQERAVEDFKSGNIKILITTDIVSRGLDLNDVTHVYNYDFPR  546

Query  299  AVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPEN  348
             +D       +  R   T T +    +R   +  +    L       PE+
Sbjct  547  NIDVYVHRVGYIGRTGKTGTSVTLITQRDSKMAGELIKILDRANQSVPED  596


>sp|A5D7C1|DDX52_BOVIN Probable ATP-dependent RNA helicase DDX52 
OS=Bos taurus OX=9913 GN=DDX52 PE=2 SV=1
Length=596

 Score = 105 bits (261),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 33/167 (20%), Positives = 64/167 (38%), Gaps = 20/167 (12%)

Query  332  DDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQ  391
               +     L   G E  KL  + +++++ F    +P  ++F ++ + A  L        
Sbjct  379  SAVETVEQELLFVGSETGKLLAMRELVKKGF----NPPVLVFVQSIERAKEL--------  426

Query  392  GLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN  451
                      +  G          TQ+ +   +  F+ G + +L+ T++   G+D    N
Sbjct  427  ------FHELIYEGINVDVIHADRTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVN  480

Query  452  VVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELIN  496
            +V+ Y   T+ +  +   GR  RA     A    TE  + L R + N
Sbjct  481  LVINYDFPTSSVEYIHRIGRTGRAGHKGKAVTFFTEDDKPLLRSVAN  527


 Score = 55.6 bits (132),  Expect = 1e-06, Method: Composition-based stats.
 Identities = 28/130 (22%), Positives = 53/130 (41%), Gaps = 6/130 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA--KVVVLVNRVHLVTQHG  64
            Q + I   L G+ ++   PTG+GKT A +     HL+       + +++     L +Q  
Sbjct  190  QMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMHLKQPTNKGFRALIISPTRELASQIH  249

Query  65   EEFRRMLDGRWTVTTL--SGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
             E  ++ +G      +     +  +      ++  D+L+ T   L   L        ++L
Sbjct  250  RELVKLSEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPP--GIDL  307

Query  123  TVFSLIVVDE  132
            T    +VVDE
Sbjct  308  TSVEWLVVDE  317


>sp|Q8K301|DDX52_MOUSE Probable ATP-dependent RNA helicase DDX52 
OS=Mus musculus OX=10090 GN=Ddx52 PE=2 SV=2
Length=598

 Score = 105 bits (261),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 33/167 (20%), Positives = 63/167 (38%), Gaps = 20/167 (12%)

Query  332  DDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQ  391
               +     L   G E  KL  + +++++ F     P  ++F ++ + A  L        
Sbjct  382  SAVETVEQELLFVGSETGKLLAMRELVKKGFK----PPVLVFVQSIERAKEL--------  429

Query  392  GLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN  451
                      +  G          TQ+ +   +  F+ G + +L+ T++   G+D    N
Sbjct  430  ------FHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVN  483

Query  452  VVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELIN  496
            +V+ Y   T+ +  +   GR  RA     A    TE  + L R + N
Sbjct  484  LVINYDFPTSSVEYIHRIGRTGRAGNRGKAVTFFTEDDKPLLRSVAN  530


 Score = 55.6 bits (132),  Expect = 1e-06, Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 73/212 (34%), Gaps = 19/212 (9%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA--KVVVLVNRVHLVTQHG  64
            Q + I   L G+ ++   PTG+GKT A +      L+       + +V+     L +Q  
Sbjct  193  QMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPTNKGFRALVISPTRELASQIH  252

Query  65   EEFRRMLDGRWTVTTL--SGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
             E  ++ +G      +     +  +      ++  D+L+ T   L   L        ++L
Sbjct  253  RELIKISEGTGFRIHMIHKAAIAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPP--GIDL  310

Query  123  TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAI  182
            T    +VVDE                + + K    + L  +     SP    A       
Sbjct  311  TNVEWLVVDES------------DKLFEDGKTGFREQLASIFLACTSPKVRRAMFSATFA  358

Query  183  NHVLQLCA-NLDTWCIMSPQNCCPQLQEHSQQ  213
              V Q C  NLD    +S       ++   Q+
Sbjct  359  YDVEQWCKLNLDNVVSVSIGARNSAVETVEQE  390


>sp|A7F4L5|DRS1_SCLS1 ATP-dependent RNA helicase drs1 OS=Sclerotinia 
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 
GN=drs1 PE=3 SV=1
Length=801

 Score = 105 bits (262),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 75/185 (41%), Gaps = 20/185 (11%)

Query  343  THGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL  402
              G E  ++  L  +    ++     R I+F R ++ AH   +                 
Sbjct  493  RPGREGKRMGYLLYLCANVYTD----RVIVFFRQKKEAHRARIIFG--------------  534

Query  403  LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE  462
            L G   +     M+Q  + + ++ F+DG  + L+AT +A  GLDI   + V+ Y    + 
Sbjct  535  LSGLKATELHGSMSQEQRIKSVEAFRDGKASFLLATDLASRGLDIKGVDTVINYEAPQSH  594

Query  463  ISMVQARGR-ARADQSVYA-FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA  520
               +   GR ARA +S  A  +A E  R++ +  +  +     +     ++  +   +  
Sbjct  595  DIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAAVKASRTQGAKVVSRVIEASEADSWSE  654

Query  521  KIRDL  525
            K+ ++
Sbjct  655  KVDEM  659


 Score = 51.3 bits (121),  Expect = 2e-05, Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 52/137 (38%), Gaps = 14/137 (10%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT--RAAAYVAKRHL---ETVDGAKVVVLVNRVHLVT  61
            Q + I  AL GK+++    TG+GKT       V +R L   + V  ++V +L+    L  
Sbjct  295  QSKTIPVALLGKDVVGGAVTGSGKTAAFI-VPVLERLLYRPKKVPTSRVAILMPTRELAI  353

Query  62   QHGEE---FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEE  118
            Q            D ++ +    G +  +     L    D++I T       + +     
Sbjct  354  QCHAVATKLASHTDIKFCLAV--GGLSLKVQEAELRLRPDVIIATPGRFIDHMRNSPS--  409

Query  119  HVELTVFSLIVVDECHH  135
               +    ++V+DE   
Sbjct  410  -FTVDTLEILVLDEADR  425


>sp|A3GFV3|FAL1_PICST ATP-dependent RNA helicase FAL1 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=FAL1 PE=3 SV=1
Length=399

 Score = 102 bits (254),  Expect = 4e-22, Method: Composition-based stats.
 Identities = 28/157 (18%), Positives = 60/157 (38%), Gaps = 16/157 (10%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K +     L   + +    + +IF  T+   + L   +++Q                   
Sbjct  248  KEDWKFDTLCDLYDNLTITQAVIFCNTKLKVNWLTDQMRKQNFTVV--------------  293

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
            S    M Q ++  ++  F+ G   +L++T V   G+D+   ++V+ Y L T++ + +   
Sbjct  294  SMHGDMKQDERDSIMNDFRTGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENYIHRI  353

Query  470  GR-ARADQSVYAF-VATEGSRELKRELINEALETLME  504
            GR  R  +   A  + T+      R+        + E
Sbjct  354  GRSGRFGRKGVAINLITKEDVATLRDFEKYYSTKIRE  390


 Score = 44.4 bits (103),  Expect = 0.003, Method: Composition-based stats.
 Identities = 19/129 (15%), Positives = 43/129 (33%), Gaps = 6/129 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q   IM  + G++ I    +G GKT   +  + +         + ++L     L  Q   
Sbjct  53   QSRAIMQIINGRDTIAQAQSGTGKTATFSIGMLQAIDTNAKDCQALILSPTRELAVQIQN  112

Query  66   EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
              + + D     T    G          L +   ++  T   +   +    + + +    
Sbjct  113  VVKHLGDYMNIHTHACIGGTHVGDDIKKLKQGQQIVSGTPGRVVDMV----KRQQLSTRN  168

Query  125  FSLIVVDEC  133
              ++++DE 
Sbjct  169  IKMLILDEA  177


>sp|Q5ADL0|PRP5_CANAL Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) 
OX=237561 GN=PRP5 PE=3 SV=1
Length=884

 Score = 105 bits (261),  Expect = 4e-22, Method: Composition-based stats.
 Identities = 72/430 (17%), Positives = 148/430 (34%), Gaps = 55/430 (13%)

Query  145  IMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCC  204
            ++    + +  +    P  +GL  SP    A +++  I +  +   NL   C     +  
Sbjct  352  MLRHIQDQQFSKDNQGP--IGLILSPTRELALQIEKEILNFTKRNNNLRVCCCYGGSSIE  409

Query  205  PQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVK  264
             Q+    ++  +       R  D       ++++       + + + +     +E QV K
Sbjct  410  NQI-NELKKGVEIIVGTPGRVIDLLAANSGRVLNLKRCTFVVLDEADRMFDLGFEPQVNK  468

Query  265  LSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAE  324
            +     L  ++  R   L    +   +         D +  +        V   +I    
Sbjct  469  I-----LTQIRPDRQTVLFSATFPRKMETLAKQILTDPVVII---VGGISVVAPEI----  516

Query  325  RRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLL  384
            ++ + LF+    E         +  ++E L  IL          + ++FT  +  A  L+
Sbjct  517  KQEVVLFETSAEEQDK-----YKQQRVEKLHDILTNYQIEHPDSKILVFTEKQNDADELV  571

Query  385  LWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ--DGTLNLLVATSVAE  442
              L   +                  +      Q D++  I++F   D  +N+L+ATS+A 
Sbjct  572  ANLLSNKYPAI--------------AIHGGKDQMDRKYAIKEFASMDSGINILIATSIAA  617

Query  443  EGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSR-----------EL  490
             GLD+ +  +V+ +    +    V   GR  RA     A      S+           +L
Sbjct  618  RGLDVRNLGLVINFDPPNHMEDYVHRVGRTGRAGAKGNAITFVSSSQPKEVFNLVKALKL  677

Query  491  KRELINEALETLMEQAVAAV----QKMDQAEYQAKIRDLQQAALTKRAAQAAQ---RENQ  543
                I+  LE +  + V  V    +K+        + +LQ+    K   +  +   ++ Q
Sbjct  678  SHSDIDPKLEEIANKFVTKVKAGKEKISSGFGGKGLDNLQEVRDNKLKLEKQRFGDQQPQ  737

Query  544  RQQFPVEHVQ  553
            RQQ   E  +
Sbjct  738  RQQEETETKK  747


 Score = 50.6 bits (119),  Expect = 5e-05, Method: Composition-based stats.
 Identities = 24/137 (18%), Positives = 49/137 (36%), Gaps = 9/137 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK------VVVLVNRVHLV  60
            Q + +   L G+++I    TG+GKT +      RH++    +K       ++L     L 
Sbjct  321  QSQALPTILSGRDVIGIAKTGSGKTLSYVLPMLRHIQDQQFSKDNQGPIGLILSPTRELA  380

Query  61   TQHGEEFRRMLDGRWTVTTLS--GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEE  118
             Q  +E          +      G          L +  ++++ T   +   L +     
Sbjct  381  LQIEKEILNFTKRNNNLRVCCCYGGSSIENQINELKKGVEIIVGTPGRVIDLLAANSGR-  439

Query  119  HVELTVFSLIVVDECHH  135
             + L   + +V+DE   
Sbjct  440  VLNLKRCTFVVLDEADR  456


>sp|P0CQ86|DBP5_CRYNJ ATP-dependent RNA helicase DBP5 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=DBP5 PE=3 SV=2
Length=518

 Score = 104 bits (258),  Expect = 4e-22, Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 72/203 (35%), Gaps = 37/203 (18%)

Query  345  GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI  404
              E+ K E L       +      + I+F + + +A  +   L  +              
Sbjct  342  DSEDQKYEAL----SALYDCLVIGQSIVFCKRKVTADHIAERLISE--------------  383

Query  405  GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT----  460
            G   +S       +++  ++  F++G   +L+ T+V   G+DIP  N+VV Y +      
Sbjct  384  GHAVASLHGDKLSQERDAILDGFRNGETKVLITTNVIARGIDIPAVNMVVNYDVPDLGPG  443

Query  461  ----NEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQ  515
                +  + +   GR  R  +   + + T   R          +E +M      ++K+D 
Sbjct  444  GNGPDIETYIHRIGRTGRFGRKGCSVIFTHDYRS------KSDVERIMNTLGKPMKKID-  496

Query  516  AEYQAKIRDLQQAALTKRAAQAA  538
                    D++Q     + A   
Sbjct  497  ---ARSTTDIEQLEKALKLAMKG  516


>sp|Q0JM17|RH56_ORYSJ DEAD-box ATP-dependent RNA helicase 56 OS=Oryza 
sativa subsp. japonica OX=39947 GN=AIP1 PE=1 SV=2
Length=432

 Score = 103 bits (256),  Expect = 4e-22, Method: Composition-based stats.
 Identities = 42/256 (16%), Positives = 89/256 (35%), Gaps = 43/256 (17%)

Query  286  RYNDALLIHDTVRAVDALAALQD--------------FYHREHVTKTQILCAERRLLALF  331
            +     ++ +  + +D+L   +D                    ++K      ++ +    
Sbjct  194  KNVRHFILDECDKMLDSLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPM  253

Query  332  DDRKNELAHLATHG--------PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSL  383
            +   ++ A L  HG         E  K   L  +L       +  + +IF ++   A  L
Sbjct  254  EIYVDDEAKLTLHGLVQHYIKLSEAEKNRKLNDLLDAL----DFNQVVIFVKSVSRAAEL  309

Query  384  LLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEE  443
               L +                    S  + MTQ ++    + F++G   +LVAT +   
Sbjct  310  NKLLCECNFPAI--------------SIHSGMTQEERLTRYKNFKEGHKRILVATDLVGR  355

Query  444  GLDIPHCNVVVRYGLLTNEISMVQARGRARA-DQSVYAFVATEGSRELKRELINEALETL  502
            G+DI   N+V+ Y +  +  S +   GRA        A      + +   +++N+  E  
Sbjct  356  GIDIERVNIVINYDMPDSADSYLHRVGRAGRFGTKGLAITFVSSASD--SDVLNQVQERF  413

Query  503  MEQAVAAVQKMDQAEY  518
                    +++D + Y
Sbjct  414  EVDIKELPEQIDTSTY  429


 Score = 44.0 bits (102),  Expect = 0.004, Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 49/131 (37%), Gaps = 8/131 (6%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE  65
            Q E I  A+ G ++I    +G GKT      + + ++ V G    +VL +   L  Q   
Sbjct  78   QHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVAGQVGALVLCHTRELAYQICH  137

Query  66   EFRRMLD--GRWTVTTLSGDMGPRAGFGHLARCH-DLLICTAELLQMALTSPEEEEHVEL  122
            EF R         V    G +  +     L      +++ T       + +   E+ + L
Sbjct  138  EFERFSKYLPEVKVAVFYGGVHIKKHKDLLKNDCPHIVVGTP----GRILALAREKDLSL  193

Query  123  TVFSLIVVDEC  133
                  ++DEC
Sbjct  194  KNVRHFILDEC  204


>sp|P0CQ90|MAK5_CRYNJ ATP-dependent RNA helicase MAK5 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=MAK5 PE=3 SV=1
Length=772

 Score = 105 bits (261),  Expect = 4e-22, Method: Composition-based stats.
 Identities = 45/253 (18%), Positives = 90/253 (36%), Gaps = 36/253 (14%)

Query  306  LQDFYHREHVTKTQILCAERRLLALFD--DRKNELAHLATHGPENPKLEMLEKILQRQFS  363
            LQ    R   +          L  L +  D ++E   +    PE   +  L + +     
Sbjct  410  LQKNLKRRSRSWKGKGKRSSTLEDLVEKLDFRDENPEVIDLSPEGGVVSSLRESMIESTK  469

Query  364  SSNSP-----------RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQS  412
                            R I+F  +  S       +++   L T+                
Sbjct  470  DDKDLYLYYFLLRYPGRSIVFVNSIDS-------IRRLLPLFTLLQLPVF-------PLH  515

Query  413  THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-  471
            +H+ Q+ + + + +F+     +L+AT VA  GLDIP  + VV + L     + +   GR 
Sbjct  516  SHLQQKQRLKNLDRFKSNPKGILIATDVAARGLDIPQVDHVVHFNLPRTADAYIHRSGRT  575

Query  472  ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAAL  530
            ARA    +A  + +   + ++R L+       +E+         +A +   +R+  +  +
Sbjct  576  ARAQNEGFALQLVSPDEKSVQRALM-----KSLERTHELPDLPIEAGFLPSLRE--RLRV  628

Query  531  TKRAAQAAQRENQ  543
                 +A  R  +
Sbjct  629  ATEIEKAQHRATK  641


 Score = 58.3 bits (139),  Expect = 2e-07, Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 55/155 (35%), Gaps = 23/155 (15%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK--------VVVLVNRVH  58
            Q   I   + G++++    TG+GKT A +     +L     +K         +VL     
Sbjct  199  QSRAIPAGITGRDVVGVAETGSGKTLAYSLPILHYLLGQRKSKAGIKRPLSALVLCPTRE  258

Query  59   LVTQ---HGEEFRRM-----------LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTA  104
            L  Q   H     +               R +V ++ G +  +     L R  D+++ T 
Sbjct  259  LALQVMDHLNALLKHALATPDGEKPQGPPRVSVGSVVGGLSAQKQKRILERGCDVIVATP  318

Query  105  ELLQMALTSPEEEEHVELTVFSLIVVDECHHTHKD  139
              L   + + +E     +     +V+DE     ++
Sbjct  319  GRLWDLIKADDELA-TSVRTLRFLVIDEADRMIEN  352


>sp|Q5Z6G5|RH35B_ORYSJ DEAD-box ATP-dependent RNA helicase 35B 
OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0697200 PE=3 
SV=1
Length=619

 Score = 104 bits (259),  Expect = 5e-22, Method: Composition-based stats.
 Identities = 35/186 (19%), Positives = 68/186 (37%), Gaps = 17/186 (9%)

Query  347  ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA  406
            E  K E     L      +  P  ++F   +     +  +L              LL G 
Sbjct  405  EYVKEEARIIYLLECLQKTPPP-VLVFCEHKADVDYIQEFL--------------LLKGV  449

Query  407  GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV  466
               +        ++++  + F+    ++LVAT VA +GLDIP    V+ Y +     + V
Sbjct  450  EAVAIHGGKDDEERKDAFKSFKASEKDVLVATDVASKGLDIPDIQHVINYDMPAEIENYV  509

Query  467  QARGR-ARADQSVYAFVATEGSRELKREL-INEALETLMEQAVAAVQKMDQAEYQAKIRD  524
               GR  R  ++  A      ++     L + + L    ++    +  +D  +   K+  
Sbjct  510  HRIGRTGRRGKTGVATTFINKNQTETTLLDLKQLLIESKQRLPPILADLDDPQEDDKVAI  569

Query  525  LQQAAL  530
             QQ+ +
Sbjct  570  AQQSGV  575


 Score = 49.8 bits (117),  Expect = 7e-05, Method: Composition-based stats.
 Identities = 24/145 (17%), Positives = 47/145 (32%), Gaps = 20/145 (14%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAY-VAKRHLETVDGAKVV--------VLVNRV  57
            Q + +  AL G+++I    TG+GKT      +    L+      +V        ++    
Sbjct  200  QVQGLPVALSGRDMIGIAFTGSGKTLVFVLPLIMAALQEEILMPIVPGEGPFGLIVCPSR  259

Query  58   HLVTQHGEEFRRMLDGRWTVT-------TLSGDMGPRAGFGHLARCHDLLICTAELLQMA  110
             L  Q  E     L                 G +  R     + +   +++ T   L+  
Sbjct  260  ELARQTHEVIEMFLAPLMEAGYPEIRPLLCIGGVDMRTQMEVVKKGVHIVVATPGRLKDL  319

Query  111  LTSPEEEEHVELTVFSLIVVDECHH  135
            L+  +    + L     + +DE   
Sbjct  320  LSKKK----MNLDNCRYLTLDEADR  340


>sp|Q9GZR7|DDX24_HUMAN ATP-dependent RNA helicase DDX24 OS=Homo 
sapiens OX=9606 GN=DDX24 PE=1 SV=1
Length=859

 Score = 105 bits (261),  Expect = 5e-22, Method: Composition-based stats.
 Identities = 85/565 (15%), Positives = 172/565 (30%), Gaps = 93/565 (16%)

Query  7    QWEVIMPALEGK-NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q   + PA+  K +I+    TG+GKT A                    +  +H V Q  +
Sbjct  219  QALTLAPAIRDKLDILGAAETGSGKTLA------------------FAIPMIHAVLQWQK  260

Query  66   EFRRMLDGRWTVTTLSGDM---------GPRAGFGHLARCHDLLICTAELLQMALTSPEE  116
              R             G+           P           D  +  +E L   + +   
Sbjct  261  --RNAAPPPSNTEAPPGETRTEAGAETRSPGKAEAESDALPDDTVIESEALPSDIAAEAR  318

Query  117  E--EHVELTVFSLIVVDECHHTHKDTVYNVIMSQYL------------------------  150
                        L   D+      +   ++I  + +                        
Sbjct  319  AKTGGTVSDQALLFGDDDA----GEGPSSLIREKPVPKQNENEEENLDKEQTGNLKQELD  374

Query  151  -ELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQE  209
             +    +A P   +LGL  +P    A ++   I+ V +    + T  ++   +   Q + 
Sbjct  375  DKSATCKAYPKRPLLGLVLTPTRELAVQVKQHIDAVARF-TGIKTAILVGGMSTQKQQRM  433

Query  210  HSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAA  269
             +++P +       R  +   +    L +       + + + +   + +  ++ +L E  
Sbjct  434  LNRRP-EIVVATPGRLWELIKEKHYHLRNLRQLRCLVVDEADRMVEKGHFAELSQLLEML  492

Query  270  ALAGLQEQR---VYALHLRRYNDA---LLIHDTVRAVDALAALQDFYHREHVTKTQILCA  323
              +    +R   V++  L   + A   +L     + +D  A L     +  +     +  
Sbjct  493  NDSQYNPKRQTLVFSATLTLVHQAPARILHKKHTKKMDKTAKLDLLMQKIGMRGKPKVID  552

Query  324  ERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSL  383
              R     +     L     H   + K   L   L +        R ++F  +      L
Sbjct  553  LTRN----EATVETLTETKIHCETDEKDFYLYYFLMQY-----PGRSLVFANSISCIKRL  603

Query  384  LLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEE  443
               L+    +                     M Q+ +   +++F      +L+AT VA  
Sbjct  604  SGLLKVLDIMPLTLHAC--------------MHQKQRLRNLEQFARLEDCVLLATDVAAR  649

Query  444  GLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETL  502
            GLDIP    V+ Y +       V   GR ARA     + +       +  + I + L+  
Sbjct  650  GLDIPKVQHVIHYQVPRTSEIYVHRSGRTARATNEGLSLMLIGPEDVINFKKIYKTLKKD  709

Query  503  MEQAVAAVQKMDQAEYQAKIRDLQQ  527
             +  +  VQ       + +IR  +Q
Sbjct  710  EDIPLFPVQTKYMDVVKERIRLARQ  734


>sp|Q5JK84|RH15_ORYSJ DEAD-box ATP-dependent RNA helicase 15 OS=Oryza 
sativa subsp. japonica OX=39947 GN=AIP2 PE=1 SV=1
Length=432

 Score = 102 bits (255),  Expect = 5e-22, Method: Composition-based stats.
 Identities = 42/256 (16%), Positives = 89/256 (35%), Gaps = 43/256 (17%)

Query  286  RYNDALLIHDTVRAVDALAALQD--------------FYHREHVTKTQILCAERRLLALF  331
            +     ++ +  + +D+L   +D                    ++K      ++ +    
Sbjct  194  KNVRHFILDECDKMLDSLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPM  253

Query  332  DDRKNELAHLATHG--------PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSL  383
            +   ++ A L  HG         E  K   L  +L       +  + +IF ++   A  L
Sbjct  254  EIYVDDEAKLTLHGLVQHYIKLSEAEKNRKLNDLLDAL----DFNQVVIFVKSVSRAAEL  309

Query  384  LLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEE  443
               L +                    S  + MTQ ++    + F++G   +LVAT +   
Sbjct  310  NKLLCECNFPAI--------------SIHSGMTQEERLTRYKNFKEGHKRILVATDLVGR  355

Query  444  GLDIPHCNVVVRYGLLTNEISMVQARGRARA-DQSVYAFVATEGSRELKRELINEALETL  502
            G+DI   N+V+ Y +  +  S +   GRA        A      + +   +++N+  E  
Sbjct  356  GIDIERVNIVINYDMPDSADSYLHRVGRAGRFGTKGLAITFVSSASD--SDVLNQVQERF  413

Query  503  MEQAVAAVQKMDQAEY  518
                    +++D + Y
Sbjct  414  EVDIKELPEQIDTSTY  429


 Score = 44.0 bits (102),  Expect = 0.004, Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 49/131 (37%), Gaps = 8/131 (6%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE  65
            Q E I  A+ G ++I    +G GKT      + + ++ V G    +VL +   L  Q   
Sbjct  78   QHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVAGQVGALVLCHTRELAYQICH  137

Query  66   EFRRMLD--GRWTVTTLSGDMGPRAGFGHLARCH-DLLICTAELLQMALTSPEEEEHVEL  122
            EF R         V    G +  +     L      +++ T       + +   E+ + L
Sbjct  138  EFERFSKYLPEVKVAVFYGGVHIKKHKDLLKNDCPHIVVGTP----GRILALAREKDLSL  193

Query  123  TVFSLIVVDEC  133
                  ++DEC
Sbjct  194  KNVRHFILDEC  204


>sp|P0CQ87|DBP5_CRYNB ATP-dependent RNA helicase DBP5 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=DBP5 PE=3 SV=1
Length=546

 Score = 104 bits (258),  Expect = 5e-22, Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 72/203 (35%), Gaps = 37/203 (18%)

Query  345  GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI  404
              E+ K E L       +      + I+F + + +A  +   L  +              
Sbjct  370  DSEDQKYEAL----SALYDCLVIGQSIVFCKRKVTADHIAERLISE--------------  411

Query  405  GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT----  460
            G   +S       +++  ++  F++G   +L+ T+V   G+DIP  N+VV Y +      
Sbjct  412  GHAVASLHGDKLSQERDAILDGFRNGETKVLITTNVIARGIDIPAVNMVVNYDVPDLGPG  471

Query  461  ----NEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQ  515
                +  + +   GR  R  +   + + T   R          +E +M      ++K+D 
Sbjct  472  GNGPDIETYIHRIGRTGRFGRKGCSVIFTHDYRS------KSDVERIMNTLGKPMKKID-  524

Query  516  AEYQAKIRDLQQAALTKRAAQAA  538
                    D++Q     + A   
Sbjct  525  ---ARSTTDIEQLEKALKLAMKG  544


>sp|A5DE68|FAL1_PICGU ATP-dependent RNA helicase FAL1 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=FAL1 PE=3 
SV=2
Length=397

 Score = 102 bits (254),  Expect = 5e-22, Method: Composition-based stats.
 Identities = 28/165 (17%), Positives = 66/165 (40%), Gaps = 15/165 (9%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K +     L   + +    + +IF  T+   + L         ++  +     + G    
Sbjct  246  KEDWKFDTLCDLYDNLTITQAVIFCNTKAKVNWLA------GQMRKSNFTVAAMHG----  295

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 M Q D+  ++++F+ G+  +L++T V   G+D+   ++V+ Y L  ++ + V   
Sbjct  296  ----DMKQEDRDSIMKEFRSGSTRVLISTDVWARGIDVQQVSLVINYDLPLDKENYVHRI  351

Query  470  GR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM  513
            GR  R  +   A        + + + +     T + +  A + K+
Sbjct  352  GRSGRFGRKGTAINLLTSQDKDELKSLQHYYSTKIREVPADLSKI  396


 Score = 46.7 bits (109),  Expect = 4e-04, Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 43/129 (33%), Gaps = 6/129 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE  65
            Q   IM  + G++ I    +G GKT   +      ++T     + +VL     L  Q   
Sbjct  51   QSRAIMQIIRGRDTIAQAQSGTGKTATFSIGILSSIDTKSKDCQALVLSPTRELAQQIEN  110

Query  66   EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
                + D     +    G          L +   ++  T   +   +    +  ++    
Sbjct  111  VIEHLGDYMNVRSHACIGGTQVGEDVKKLQQGQHIISGTPGRVLDMI----KRRNIMPRH  166

Query  125  FSLIVVDEC  133
              ++V+DE 
Sbjct  167  VKMLVLDEA  175


>sp|Q4WRV2|DRS1_ASPFU ATP-dependent RNA helicase drs1 OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 
/ Af293) OX=330879 GN=drs1 PE=3 SV=1
Length=830

 Score = 104 bits (260),  Expect = 5e-22, Method: Composition-based stats.
 Identities = 47/214 (22%), Positives = 91/214 (43%), Gaps = 28/214 (13%)

Query  343  THGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL  402
              G E+ +L  L  +    ++     R I+F R ++ AH + +                 
Sbjct  535  RPGREDKRLGYLLYLCNEIYTG----RVIVFFRQKREAHRVRIVFG--------------  576

Query  403  LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE  462
            L+G   +     M+Q  + + ++ F++G +  L+AT +A  GLDI     V+ Y    + 
Sbjct  577  LLGLKAAELHGSMSQEQRIKSVENFREGKVAFLLATDLASRGLDIKGVETVINYEAPQSH  636

Query  463  ISMVQARGR-ARADQSVYA-FVATEGSRELKRELIN-------EALETLMEQAVAAVQKM  513
               +   GR ARA +S  A  +A E  R++ +  +        + +  +++ AVA     
Sbjct  637  EIYLHRVGRTARAGRSGRACTIAAEPDRKIVKSAVKAGKAQGAKIVSRVVDPAVADEWAA  696

Query  514  DQAEYQAKIRD-LQQAALTKRAAQAAQRENQRQQ  546
                 + +I + LQ+  L K+ AQA  +  + + 
Sbjct  697  KAKGLEDEIEEVLQEEKLEKQMAQAEMQVTKGEN  730


 Score = 54.8 bits (130),  Expect = 3e-06, Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 48/136 (35%), Gaps = 12/136 (9%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHL----ETVDGAKVVVLVNRVHLVTQ  62
            Q + I  AL GK+I+    TG+GKT A        L      V  ++V +L+    L  Q
Sbjct  337  QQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLLFRPRKVPTSRVAILMPTRELAVQ  396

Query  63   HGEE---FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
                        D  +    L G    R     L +  D++I T       + +      
Sbjct  397  CYNVATKLATHTDITF--CQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSPS---  451

Query  120  VELTVFSLIVVDECHH  135
              +    ++V+DE   
Sbjct  452  FTVDTLEILVLDEADR  467


>sp|Q6FJG1|FAL1_CANGA ATP-dependent RNA helicase FAL1 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=FAL1 PE=3 SV=1
Length=399

 Score = 102 bits (253),  Expect = 6e-22, Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 55/147 (37%), Gaps = 16/147 (11%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K E     L   + S    + +IF  +++    L   L+Q                    
Sbjct  248  KEEWKFDTLCDIYDSLTITQCVIFCNSKKKVDWLAHKLKQSN--------------FAVI  293

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
            S    M Q ++  V+ +F+ G   +L++T V   G+D+   ++V+ Y L     + V   
Sbjct  294  SMHGDMKQDERDRVMNEFRTGQSRVLISTDVWARGIDVQQVSLVINYDLPEITENYVHRI  353

Query  470  GR-ARADQSVYAF-VATEGSRELKREL  494
            GR  R  +   A    T+      +E+
Sbjct  354  GRSGRFGRKGVAINFLTKIDASRMKEI  380


 Score = 42.9 bits (99),  Expect = 0.008, Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 45/130 (35%), Gaps = 7/130 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE  65
            Q   I   + GK++I    +G GKT        + ++      + +VL     L  Q G+
Sbjct  50   QSRAITQIISGKDVIAQAQSGTGKTATFTIGMLQAIDLKKHDLQALVLSPTRELAAQIGK  109

Query  66   EFRRMLD-GRWTVTTLSGDMGPRAGFGHLAR-CHDLLICTAELLQMALTSPEEEEHVELT  123
                + D        ++G    +     + +    ++  T   +   +        +E  
Sbjct  110  VVTNLGDYMNVKAYAMTGGKTMKDDLKKIQKHGCQVISGTPGRVLDMIKRRL----IETR  165

Query  124  VFSLIVVDEC  133
               ++V+DE 
Sbjct  166  HVQILVLDEA  175


>sp|Q914K8|Y022_SIFVH Putative helicase 22 OS=Sulfolobus islandicus 
filamentous virus (isolate Iceland/Hveragerdi) OX=654908 
GN=SIFV0022 PE=4 SV=1
Length=559

 Score = 104 bits (258),  Expect = 6e-22, Method: Composition-based stats.
 Identities = 52/262 (20%), Positives = 102/262 (39%), Gaps = 31/262 (12%)

Query  1    MELRSYQWEVIMPALEGKNII----IWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNR  56
             E+R+YQ   I   +   N+I    I  PTG+GK+  A   A   L+  + AK+V  VN 
Sbjct  172  FEMRNYQINSIKSWVSDVNVIGNGIIKAPTGSGKSVIAILSALEILKNKNNAKIVYAVNS  231

Query  57   VHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE  116
              L+ Q  + F +  D  + +  +SG++          R   + +     +    +  + 
Sbjct  232  TTLLKQF-QNFAKKEDLPFVL--VSGEIDEIKKGE---RSDFIALS----ISYYYSKKKR  281

Query  117  EEHVELTVF----SLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGT  172
             EH +L        L+++DE HHT  + V ++++            P    LGL+A+P  
Sbjct  282  NEHEKLKELVTNADLVIIDEAHHTPANIVKSLLLD----------SPNSIRLGLSATPIR  331

Query  173  GGASKLDGAINHVLQLCANLDTWCIMSPQNCCP--QLQEHSQQPCKQYNLCHRRSQDPFG  230
                +L+  +  + ++   +D   ++  +   P   ++   + P K          +   
Sbjct  332  EDGKELE-IMGLLGKISFTIDYTELVRNRYLVPIEYIRYIPEIPKKLKLKIQDLDDNKDP  390

Query  231  DLLKKLMDQIHDHLEMPELSRK  252
            +   K    +    E    + K
Sbjct  391  ENFAKYYSSLLRSFEHSPNTNK  412


 Score = 60.2 bits (144),  Expect = 4e-08, Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 54/141 (38%), Gaps = 20/141 (14%)

Query  331  FDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQ  390
            F    + L     H P   K       +  +    N    ++  R    A  L   +++ 
Sbjct  393  FAKYYSSLLRSFEHSPNTNK------QIISKIKQLNQYPCLVIVRRIAIAKKLAEIMREN  446

Query  391  QGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHC  450
                          G      S+     ++ E I+  ++  L +L++TS+A+EGLDIP+ 
Sbjct  447  --------------GIIADWVSSKTKLEERMEKIEALKNEKLQVLISTSLADEGLDIPNL  492

Query  451  NVVVRYGLLTNEISMVQARGR  471
             +VV      + I ++Q  GR
Sbjct  493  RLVVLLTQGKSRIKLIQRIGR  513


>sp|Q59MW2|DBP6_CANAL ATP-dependent RNA helicase DBP6 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DBP6 
PE=3 SV=2
Length=606

 Score = 104 bits (258),  Expect = 6e-22, Method: Composition-based stats.
 Identities = 46/292 (16%), Positives = 110/292 (38%), Gaps = 24/292 (8%)

Query  246  MPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAA  305
            + + + +   Q ++     L +    + +    V+ L +++   +  +      + +L  
Sbjct  329  IIDEADRLLNQSFQNWSNVLLDKID-SQINIAEVWKLSVQKLVFSATLTTDAGKLSSLKF  387

Query  306  LQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSS  365
                    + +K       + +  +F             G     L+ L  + +   S++
Sbjct  388  YNPRLIIVNDSK-------QLVNEIFTVPVTLSEFKIHLGVAKNSLKPLI-LTKFLISTN  439

Query  366  NSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQ  425
                 +IFT++ +S+  L   L       +++++   +    N +         + ++++
Sbjct  440  KLSNVLIFTKSNESSIRLTELLTSLFQKLSINLKIAFINSTNNRTSI-------RSKILK  492

Query  426  KFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVAT  484
            +F +  +N+L+ T +   G+D+     V+ Y L  +    V   GR ARA+Q  YA+   
Sbjct  493  QFSNQEVNILITTDLIARGIDVASITDVINYDLPNSSREYVHRVGRTARANQVGYAYSFC  552

Query  485  EGSRELKREL-------INEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAA  529
             G  E             ++ +E +       +   D+  YQ  + +LQQ A
Sbjct  553  FGKGENSWFKKLAHEVSRSKEVENVDLNVKELISDRDEEIYQQALHELQQQA  604


 Score = 52.9 bits (125),  Expect = 9e-06, Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 8/120 (7%)

Query  20   IIIWLPTGAGKTRAAAYVAKR--HLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRW-T  76
            I++   TG+GKT A +       +   V   +V++LV    L+ Q      ++  G    
Sbjct  220  ILVNASTGSGKTLAYSIPIIESLYRRVVPRVRVIILVPTKPLINQVKSTLLQLSSGTNLQ  279

Query  77   VTTLSGDMGPRAGFGHLARCH-DLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH  135
            +  L  D+        L +   D+++ T   L   L +      + L+    +++DE   
Sbjct  280  IAALKNDVSINDEKDSLTKSVPDIIVSTPGRLVEHLLNDS----INLSSLQYLIIDEADR  335


>sp|Q09775|ROK1_SCHPO ATP-dependent RNA helicase rok1 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=rok1 
PE=3 SV=1
Length=481

 Score = 103 bits (256),  Expect = 6e-22, Method: Composition-based stats.
 Identities = 32/156 (21%), Positives = 62/156 (40%), Gaps = 20/156 (13%)

Query  339  AHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI  398
              L   G +  K+ +L +++         PR +IF +  + A +L         L   +I
Sbjct  263  QRLLFVGSDTSKIVILRQMISN---GELKPRVVIFVQDIERAKAL------YTELLFDEI  313

Query  399  RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL  458
               ++ G         + Q  ++E + KF+ G + +L+AT +   G+D     +V+ +  
Sbjct  314  HVGVIHG--------ELPQAKREEALAKFRKGEIWVLIATDLLARGIDFHGVKMVINFDF  365

Query  459  LTNEISMVQARGR-ARADQSV--YAFVATEGSRELK  491
              +  S +   GR  RA  +     F   E    +K
Sbjct  366  PQSVHSYIHRIGRTGRAGNTGQAVTFFTKEDGEYIK  401


 Score = 53.6 bits (127),  Expect = 4e-06, Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 42/124 (34%), Gaps = 9/124 (7%)

Query  16   EGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA--KVVVLVNRVHLVTQHGEEFRRMLDG  73
              ++++   PTG+GKT A  +   + L+       + +++     L  Q   +  ++  G
Sbjct  82   SKRDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQIYRQAEKLSFG  141

Query  74   RWTVTTLSGDMGPRAGFGH--LARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVD  131
                         +       L   +D+ I T   L  A+ +      +        V+D
Sbjct  142  TSLKIIELSKSNEKIQEKAPKLREKYDMCIGTPMRLVQAIQTG-----LSFEKVEFFVMD  196

Query  132  ECHH  135
            E   
Sbjct  197  EADR  200


>sp|A1D1R8|DRS1_NEOFI ATP-dependent RNA helicase drs1 OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / 
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=drs1 
PE=3 SV=1
Length=819

 Score = 104 bits (260),  Expect = 7e-22, Method: Composition-based stats.
 Identities = 47/214 (22%), Positives = 91/214 (43%), Gaps = 28/214 (13%)

Query  343  THGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL  402
              G E+ +L  L  +    ++     R I+F R ++ AH + +                 
Sbjct  524  RPGREDKRLGYLLYLCNEIYTG----RVIVFFRQKREAHRVRIVFG--------------  565

Query  403  LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE  462
            L+G   +     M+Q  + + ++ F++G +  L+AT +A  GLDI     V+ Y    + 
Sbjct  566  LLGLKAAELHGSMSQEQRIKSVENFREGKVAFLLATDLASRGLDIKGVETVINYEAPQSH  625

Query  463  ISMVQARGR-ARADQSVYA-FVATEGSRELKRELIN-------EALETLMEQAVAAVQKM  513
               +   GR ARA +S  A  +A E  R++ +  +        + +  +++ AVA     
Sbjct  626  EIYLHRVGRTARAGRSGRACTIAAEPDRKIVKSAVKAGKAQGAKIVSRVVDPAVADEWAA  685

Query  514  DQAEYQAKIRD-LQQAALTKRAAQAAQRENQRQQ  546
                 + +I + LQ+  L K+ AQA  +  + + 
Sbjct  686  KAKGLEDEIEEVLQEEKLEKQMAQAEMQVTKGEN  719


 Score = 54.4 bits (129),  Expect = 3e-06, Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 48/136 (35%), Gaps = 12/136 (9%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHL----ETVDGAKVVVLVNRVHLVTQ  62
            Q + I  AL GK+I+    TG+GKT A        L      V  ++V +L+    L  Q
Sbjct  326  QQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLLFRPRKVPTSRVAILMPTRELAVQ  385

Query  63   HGEE---FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
                        D  +    L G    R     L +  D++I T       + +      
Sbjct  386  CYNVATKLATHTDITF--CQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSPS---  440

Query  120  VELTVFSLIVVDECHH  135
              +    ++V+DE   
Sbjct  441  FTVDTLEILVLDEADR  456


>sp|Q9V3C0|DDX41_DROME ATP-dependent RNA helicase abstrakt OS=Drosophila 
melanogaster OX=7227 GN=abs PE=1 SV=1
Length=619

 Score = 104 bits (258),  Expect = 7e-22, Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 65/175 (37%), Gaps = 22/175 (13%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+  L   LQ+      +P  +IF   +Q    +  +L              LL G    
Sbjct  416  KVVYLLDCLQK-----TAPPVLIFAEKKQDVDCIHEYL--------------LLKGVEAV  456

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
            +      Q ++   +  ++ G  ++LVAT VA +GLD P+   V+ Y +  +  + V   
Sbjct  457  AIHGGKDQEERSRAVDAYRVGKKDVLVATDVASKGLDFPNVQHVINYDMPDDIENYVHRI  516

Query  470  GRARADQS---VYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK  521
            GR     +       +     + +  +L +  +E   E      +   + E+Q  
Sbjct  517  GRTGRSNTKGLATTLINKTTEQSVLLDLKHLLIEGKQEVPDFLDELAPETEHQHL  571


 Score = 41.7 bits (96),  Expect = 0.024, Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 44/145 (30%), Gaps = 20/145 (14%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAY--VAKRH-------LETVDGAKVVVLVNRV  57
            Q + +   L G+++I    TG+GKT       +            E  +G   +++    
Sbjct  204  QVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPVIMFALEQEYSLPFERNEGPYGLIICPSR  263

Query  58   HLVTQHGEEFRRMLD-------GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMA  110
             L  Q  E  +                    G +        ++R   +++ T   L   
Sbjct  264  ELAKQTHEIIQHYSKHLQACGMPEIRSCLAMGGLPVSEALDVISRGVHIVVATPGRLMDM  323

Query  111  LTSPEEEEHVELTVFSLIVVDECHH  135
            L        + L +   + +DE   
Sbjct  324  LDKK----ILTLDMCRYLCMDEADR  344


>sp|P0CQ91|MAK5_CRYNB ATP-dependent RNA helicase MAK5 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=MAK5 PE=3 SV=1
Length=772

 Score = 104 bits (259),  Expect = 7e-22, Method: Composition-based stats.
 Identities = 46/253 (18%), Positives = 88/253 (35%), Gaps = 36/253 (14%)

Query  306  LQDFYHREHVTKTQILCAERRLLALFD--DRKNELAHLATHGPENPKLEMLEKILQRQFS  363
            LQ    R   +          L  L +  D ++E   +    PE   +  L + +     
Sbjct  410  LQKNLKRRSRSWKGKGKRSSTLEDLVEKLDFRDENPEVIDLSPEGGVVSSLRESMIESTK  469

Query  364  SSNSP-----------RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQS  412
                            R I+F  +     S+   L     LQ                  
Sbjct  470  DDKDLYLYYFLLRYPGRSIVFVNSI---DSIRRLLPLLTLLQLPVF-----------PLH  515

Query  413  THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-  471
            +H+ Q+ + + + +F+     +L+AT VA  GLDIP  + VV + L     + +   GR 
Sbjct  516  SHLQQKQRLKNLDRFKSNPKGILIATDVAARGLDIPQVDHVVHFNLPRTADAYIHRSGRT  575

Query  472  ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAAL  530
            ARA    +A  + +   + ++R L+       +E+         +A +   +R+  +  +
Sbjct  576  ARAQNEGFALQLVSPDEKSVQRALM-----KSLERTHELPDLPIEAGFLPSLRE--RLRV  628

Query  531  TKRAAQAAQRENQ  543
                 +A  R  +
Sbjct  629  ATEIEKAQHRATK  641


 Score = 58.3 bits (139),  Expect = 2e-07, Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 55/155 (35%), Gaps = 23/155 (15%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK--------VVVLVNRVH  58
            Q   I   + G++++    TG+GKT A +     +L     +K         +VL     
Sbjct  199  QSRAIPAGITGRDVVGVAETGSGKTLAYSLPILHYLLGQRKSKAGIKRPLSALVLCPTRE  258

Query  59   LVTQ---HGEEFRRM-----------LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTA  104
            L  Q   H     +               R +V ++ G +  +     L R  D+++ T 
Sbjct  259  LALQVMDHLNALLKHALATPDGEKPQGPPRVSVGSVVGGLSAQKQKRILERGCDVIVATP  318

Query  105  ELLQMALTSPEEEEHVELTVFSLIVVDECHHTHKD  139
              L   + + +E     +     +V+DE     ++
Sbjct  319  GRLWDLIKADDELA-TSVRTLRFLVIDEADRMIEN  352


>sp|Q6BT27|FAL1_DEBHA ATP-dependent RNA helicase FAL1 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / 
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=FAL1 PE=3 SV=1
Length=399

 Score = 102 bits (253),  Expect = 7e-22, Method: Composition-based stats.
 Identities = 47/309 (15%), Positives = 102/309 (33%), Gaps = 48/309 (16%)

Query  216  KQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEAAALAG  273
             +   C      P  +L +++   +    +   +      G     + + KL +   +  
Sbjct  90   TKSKDCQALILSPTRELAQQIQSVVKHLGDYMNVHTHACIGGTHVGEDIKKLQQGQQIVS  149

Query  274  LQEQRVYALHLRRY----NDALLIHDTVRAVDALAALQDFYHREH---------------  314
                RV  +  RR     N  ++I D    +      +  Y                   
Sbjct  150  GTPGRVVDMIKRRNLATRNIKMMILDEADELMTKGFKEQIYEIYRYLPPGVQVVVVSATL  209

Query  315  ------VTKTQILCAERRLLALFDDRKNELAHLATHG-PENPKLEMLEKILQRQFSSSNS  367
                  VT        + L+   D     +         E+ K + L  +    + S   
Sbjct  210  SREVLEVTGKFTTDPVKILVKRDDITLEGIKQYHIQCEKEDWKFDTLCDL----YDSLTI  265

Query  368  PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF  427
             + +IF  T+   + L   +++       +     + G         M Q ++  ++  F
Sbjct  266  TQAVIFCNTKVKVNWLTDQMKK------ANFTVVAMHG--------DMKQDERDSIMNDF  311

Query  428  QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATE  485
            + G   +L++T V   G+D+   ++V+ Y L T++ + V   GR  R  +   A  + T+
Sbjct  312  RTGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENYVHRIGRSGRFGRKGVAINLVTK  371

Query  486  GSRELKREL  494
               +  R++
Sbjct  372  EDVDELRDI  380


 Score = 47.9 bits (112),  Expect = 2e-04, Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 44/129 (34%), Gaps = 6/129 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE  65
            Q   IM  + GK+ I    +G GKT   +      ++T     + ++L     L  Q   
Sbjct  53   QSRAIMQIISGKDTIAQAQSGTGKTATFSIGMLEVIDTKSKDCQALILSPTRELAQQIQS  112

Query  66   EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
              + + D     T    G          L +   ++  T   +   +    +  ++    
Sbjct  113  VVKHLGDYMNVHTHACIGGTHVGEDIKKLQQGQQIVSGTPGRVVDMI----KRRNLATRN  168

Query  125  FSLIVVDEC  133
              ++++DE 
Sbjct  169  IKMMILDEA  177


>sp|Q5RDL2|DDX24_PONAB ATP-dependent RNA helicase DDX24 OS=Pongo 
abelii OX=9601 GN=DDX24 PE=2 SV=1
Length=859

 Score = 104 bits (259),  Expect = 7e-22, Method: Composition-based stats.
 Identities = 89/565 (16%), Positives = 174/565 (31%), Gaps = 93/565 (16%)

Query  7    QWEVIMPALEGK-NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q   + PA+  K +I+    TG+GKT A                    +  +H V Q  +
Sbjct  219  QVLTLAPAIRDKLDILGAAETGSGKTLA------------------FAIPMIHAVLQWQK  260

Query  66   EFRRMLDGRWTVTTLSGDMGPRAG---------FGHLARCHDLLICTAELLQMALTSPEE  116
              R             G+  P AG                 D  +  +E L     +   
Sbjct  261  --RNAAPPPSNTEAPPGETRPEAGAETRSPGKAEAESDALPDDTVIESEALPSDTAAEAR  318

Query  117  E--EHVELTVFSLIVVDECHHTHKDTVYNVI-----------------------MSQYLE  151
                        L   D+      +   ++I                       + Q L+
Sbjct  319  AKTGGTVSDQALLFGDDDA----GEGPSSLIREKPVPKQNENEEENLDKEQTGNLKQELD  374

Query  152  LKLQRAQPLPQV--LGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQE  209
             K    +  P+   LGL  +P    A ++   I+ V +    + T  ++   +   Q + 
Sbjct  375  DKSATCKTYPKRPLLGLVLTPTRELAVQVKQHIDAVARF-TGIKTAILVGGMSTQKQQRM  433

Query  210  HSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAA  269
             +++P +       R  +   +    L +       + + + +   + +  ++ +L E  
Sbjct  434  LNRRP-EIVVATPGRLWELIKEKHYHLRNLRQLRCLVVDEADRMVEKGHFAELSQLLEML  492

Query  270  ALAGLQEQR---VYALHLRRYNDA---LLIHDTVRAVDALAALQDFYHREHVTKTQILCA  323
              +    +R   V++  L   + A   +L     + +D  A L     +  +     +  
Sbjct  493  NDSQYNPKRQTLVFSATLTLVHQAPARILHKKHTKKMDKTAKLDLLMQKIGMRGKPKVID  552

Query  324  ERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSL  383
              R     +     L     H   + K   L   L +        R ++F  +      L
Sbjct  553  LTRN----EATVETLTETKIHCETDEKDFYLYYFLMQY-----PGRSLVFANSISCIKRL  603

Query  384  LLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEE  443
               L+    +                     M Q+ +   +++F      +L+AT VA  
Sbjct  604  SGLLKVLDIMPLTLHAC--------------MHQKQRLRNLEQFARLEDCVLLATDVAAR  649

Query  444  GLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETL  502
            GLDIP    V+ Y +       V   GR ARA     + +       +  + I + L+  
Sbjct  650  GLDIPKVQHVIHYQVPRTSEIYVHRSGRTARATNEGLSLMLIGPEDVINFKKIYKTLKKD  709

Query  503  MEQAVAAVQKMDQAEYQAKIRDLQQ  527
             +  +  VQ       + +IR  +Q
Sbjct  710  EDIPLFPVQTKYMDVVKERIRLARQ  734


>sp|P0CR06|DBP10_CRYNJ ATP-dependent RNA helicase DBP10 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=DBP10 PE=3 SV=1
Length=802

 Score = 104 bits (259),  Expect = 7e-22, Method: Composition-based stats.
 Identities = 45/209 (22%), Positives = 73/209 (35%), Gaps = 37/209 (18%)

Query  363  SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE  422
              S++P+ I+F  T+     +   L+                G   S   + + Q  +Q+
Sbjct  301  DPSSAPQAIVFVATKHHVDYVAELLRT--------------TGYRTSLIYSSLDQVARQQ  346

Query  423  VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYA-  480
             +  F+    ++LV T VA  GLDIP  + V+ Y         V   GR ARA +   A 
Sbjct  347  QLAGFRSHQSDVLVVTDVAARGLDIPIMDHVINYDFPAGPRIFVHRVGRTARAGRKGTAY  406

Query  481  ----------------FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD  524
                            F+ TE   E    L +  +E L E        +D+      I  
Sbjct  407  SLIVKEDFPYLCDLHTFLGTERMGEPADVLRSLPIEQLSENVEYVFHNLDET--APHITA  464

Query  525  LQQAALTKRAAQAAQRENQRQQFPVEHVQ  553
            L+      R  Q     ++ +  P  + Q
Sbjct  465  LRNV---MRKGQGMFERSRTKANPTSYRQ  490


>sp|P0CR07|DBP10_CRYNB ATP-dependent RNA helicase DBP10 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=DBP10 PE=3 SV=1
Length=802

 Score = 104 bits (259),  Expect = 7e-22, Method: Composition-based stats.
 Identities = 45/209 (22%), Positives = 73/209 (35%), Gaps = 37/209 (18%)

Query  363  SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE  422
              S++P+ I+F  T+     +   L+                G   S   + + Q  +Q+
Sbjct  301  DPSSAPQAIVFVATKHHVDYVAELLRT--------------TGYRTSLIYSSLDQVARQQ  346

Query  423  VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYA-  480
             +  F+    ++LV T VA  GLDIP  + V+ Y         V   GR ARA +   A 
Sbjct  347  QLAGFRSHQSDVLVVTDVAARGLDIPIMDHVINYDFPAGPRIFVHRVGRTARAGRKGTAY  406

Query  481  ----------------FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD  524
                            F+ TE   E    L +  +E L E        +D+      I  
Sbjct  407  SLIVKEDFPYLCDLHTFLGTERMGEPADVLRSLPIEQLSENVEYVFHNLDET--APHITA  464

Query  525  LQQAALTKRAAQAAQRENQRQQFPVEHVQ  553
            L+      R  Q     ++ +  P  + Q
Sbjct  465  LRNV---MRKGQGMFERSRTKANPTSYRQ  490


>sp|Q6BJX6|DHH1_DEBHA ATP-dependent RNA helicase DHH1 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / 
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DHH1 PE=3 SV=2
Length=516

 Score = 103 bits (256),  Expect = 7e-22, Method: Composition-based stats.
 Identities = 51/330 (15%), Positives = 108/330 (33%), Gaps = 27/330 (8%)

Query  230  GDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND  289
            G  L+  + +++D + +   +      +  ++V  LSE       +  ++ +   +   +
Sbjct  135  GTSLRDDILRLNDPVHVLVGTPGRVLDLASRKVADLSECPLFVMDEADKMLSREFKGIIE  194

Query  290  ALL-IHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPEN  348
             +L    T R     +A      +  +   Q L     +  + +     ++       E 
Sbjct  195  QILAFFPTTRQSLLFSATFPLAVKSFM--DQHLTKPYEINLMDELTLRGISQFYAFVEEK  252

Query  349  PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN  408
             KL      L   FS     + IIF  +      L   + +              +G   
Sbjct  253  QKL----HCLNTLFSKLQINQAIIFCNSTNRVELLAKKITE--------------LGYSC  294

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
                  M Q  + +V  +F+ G + +LV + +   G+DI   NVV+ +       + +  
Sbjct  295  YYSHAKMPQHARNKVFHEFRQGKVRVLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHR  354

Query  469  RGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM-----DQAEYQAKI  522
             GR  R      A      +       I + L T ++   A + K      ++A      
Sbjct  355  IGRSGRFGHLGLAINLMSWNDRYNLYKIEQELGTEIKPIPATIDKSLYVAENEAAVPRPF  414

Query  523  RDLQQAALTKRAAQAAQRENQRQQFPVEHV  552
            +  Q     +   + +  E + Q     +V
Sbjct  415  KIDQLPKGNETVHKKSGYEYKGQPEVSSNV  444


 Score = 51.0 bits (120),  Expect = 3e-05, Method: Composition-based stats.
 Identities = 27/129 (21%), Positives = 46/129 (36%), Gaps = 6/129 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLE-TVDGAKVVVLVNRVHLVTQHGE  65
            Q E I  AL G++I+     G GKT +      +     V+  + ++LV    L  Q  +
Sbjct  57   QEESIPMALAGRDILARAKNGTGKTASFVIPCLQQARPKVNKIQALILVPTRELALQTSQ  116

Query  66   EFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
              R +           +G    R     L     +L+ T   +          +  +L+ 
Sbjct  117  VVRTLGKHLGLQCMVTTGGTSLRDDILRLNDPVHVLVGTPGRVLD----LASRKVADLSE  172

Query  125  FSLIVVDEC  133
              L V+DE 
Sbjct  173  CPLFVMDEA  181


>sp|Q1E2B2|DRS1_COCIM ATP-dependent RNA helicase DRS1 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=DRS1 PE=3 SV=1
Length=840

 Score = 104 bits (259),  Expect = 8e-22, Method: Composition-based stats.
 Identities = 45/192 (23%), Positives = 83/192 (43%), Gaps = 23/192 (12%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            R I+F R ++ AH   +                 L+G   +     M+Q  +   ++ F+
Sbjct  566  RVIVFFRQKKEAHRARIIFG--------------LLGLKAAELHGSMSQEQRINAVEAFR  611

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYA-FVATEG  486
            DG +  L+AT +A  GLDI     V+ Y    +    +   GR ARA +S  A  +A E 
Sbjct  612  DGKVPFLLATDLASRGLDIKGVESVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEP  671

Query  487  SRELKRELIN-------EALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQ  539
             R++ +  +        + +  +++ AVA        E QA+I D+ +    ++    A+
Sbjct  672  DRKVVKAAVKAGRAQGAKIVSRVVDPAVADEWASKVEEMQAEIEDILKEEKEEKQLAQAE  731

Query  540  RENQRQQFPVEH  551
             + +R Q  ++H
Sbjct  732  MQVKRGQNLIKH  743


 Score = 49.4 bits (116),  Expect = 1e-04, Method: Composition-based stats.
 Identities = 23/117 (20%), Positives = 38/117 (32%), Gaps = 12/117 (10%)

Query  26   TGAGKTRAAAYVAKRHL----ETVDGAKVVVLVNRVHLVTQHGEE---FRRMLDGRWTVT  78
            TG+GKT A        L      V  ++V +L+    L  Q            D  +   
Sbjct  365  TGSGKTAAFIIPILERLLYRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTDITF--C  422

Query  79   TLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH  135
             L G    R     L +  D++I T       + +        +    ++V+DE   
Sbjct  423  QLVGGFSLREQENVLKQRPDVIIATPGRFIDHMRNS---ASFTVDTLEILVLDEADR  476


>sp|Q5AAW3|DHH1_CANAL ATP-dependent RNA helicase DHH1 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DHH1 
PE=3 SV=1
Length=549

 Score = 103 bits (256),  Expect = 8e-22, Method: Composition-based stats.
 Identities = 61/394 (15%), Positives = 119/394 (30%), Gaps = 39/394 (10%)

Query  165  GLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRR  224
            G TAS        +   +N V  L         +        L +H    C         
Sbjct  79   GKTASFIIPCLQLVKPKLNKVQALILVPTRELALQTSQVVRTLGKHVGTQCMVTTG----  134

Query  225  SQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHL  284
                 G  L+  + ++HD + +   +      +  ++VV LSE       +  ++ +   
Sbjct  135  -----GTSLRDDIVRLHDPVHILVGTPGRVLDLAARKVVDLSECPLFVMDEADKMLSREF  189

Query  285  RRYNDALL-IHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLAT  343
            +   + +L      R     +A      +  + K   L     +  + +     ++    
Sbjct  190  KGIIEQILEFFPPNRQALLFSATFPLAVKSFMDK--HLTKPYEINLMDELTLKGISQFYA  247

Query  344  HGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLL  403
               E  KL      L   FS     + IIF  +      L   + +              
Sbjct  248  FVEEKQKL----HCLNTLFSKLQINQSIIFCNSTNRVELLAKKITE--------------  289

Query  404  IGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI  463
            +G         M Q+ + +V  +F+ G +  LV + +   G+DI   NVV+ +       
Sbjct  290  LGYSCYYSHAKMPQQARNKVFHEFRQGKVRNLVCSDLLTRGIDIQAVNVVINFDFPKTAE  349

Query  464  SMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKI  522
            + +   GR  R      A      +    R  + +  + L  +       +D++ Y A+ 
Sbjct  350  TYLHRIGRSGRFGHLGLAINLMSWN---DRYSLYKIEQELGTEIKPIPATIDKSLYVAEN  406

Query  523  RDLQQAALTKRAAQAAQREN-----QRQQFPVEH  551
             D                       Q +  PV+ 
Sbjct  407  ADAVPRPFRIDELPKGNETVHNKGYQYKGQPVKD  440


 Score = 54.8 bits (130),  Expect = 2e-06, Method: Composition-based stats.
 Identities = 36/167 (22%), Positives = 67/167 (40%), Gaps = 15/167 (9%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLE-TVDGAKVVVLVNRVHLVTQHGE  65
            Q E I  AL G++I+     G GKT +      + ++  ++  + ++LV    L  Q  +
Sbjct  57   QEESIPMALAGRDILARAKNGTGKTASFIIPCLQLVKPKLNKVQALILVPTRELALQTSQ  116

Query  66   EFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHD---LLICTAELLQMALTSPEEEEHVEL  122
              R +     T   ++   G  +    + R HD   +L+ T   +          + V+L
Sbjct  117  VVRTLGKHVGTQCMVT--TGGTSLRDDIVRLHDPVHILVGTPGRVLD----LAARKVVDL  170

Query  123  TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS  169
            +   L V+DE      D + +      +E  L+   P  Q L  +A+
Sbjct  171  SECPLFVMDEA-----DKMLSREFKGIIEQILEFFPPNRQALLFSAT  212


>sp|Q0CZN5|DRS1_ASPTN ATP-dependent RNA helicase drs1 OS=Aspergillus 
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=drs1 
PE=3 SV=1
Length=821

 Score = 104 bits (259),  Expect = 8e-22, Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 69/158 (44%), Gaps = 20/158 (13%)

Query  343  THGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL  402
              G E+ +L  L  + +  ++     R I+F R ++ AH + +                 
Sbjct  529  RPGREDKRLGYLLYLCKEIYTG----RVIVFFRQKREAHRVRIVFG--------------  570

Query  403  LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE  462
            L+G   +     M+Q  + + ++ F+DG +  L+AT +A  GLDI     V+ Y    + 
Sbjct  571  LLGLKAAELHGSMSQEQRIKSVENFRDGKVAFLLATDLASRGLDIKGVETVINYEAPQSH  630

Query  463  ISMVQARGR-ARADQSVYA-FVATEGSRELKRELINEA  498
               +   GR ARA +S  A  +A E  R++ +  +  +
Sbjct  631  EIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAAVKAS  668


 Score = 52.5 bits (124),  Expect = 1e-05, Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 48/136 (35%), Gaps = 12/136 (9%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHL----ETVDGAKVVVLVNRVHLVTQ  62
            Q + I  AL GK+I+    TG+GKT A        L      V  ++V +L+    L  Q
Sbjct  331  QRKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLLFRPRKVPTSRVAILMPTRELAVQ  390

Query  63   HGEE---FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
                        D  +    L G    R     L +  D++I T       + +      
Sbjct  391  CYNVATKLATYTDITF--CQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNS---AS  445

Query  120  VELTVFSLIVVDECHH  135
              +    ++V+DE   
Sbjct  446  FTVDTLEILVLDEADR  461


>sp|Q54IV3|DDX42_DICDI Probable ATP-dependent RNA helicase ddx42 
OS=Dictyostelium discoideum OX=44689 GN=ddx42 PE=3 SV=1
Length=986

 Score = 104 bits (259),  Expect = 8e-22, Method: Composition-based stats.
 Identities = 64/382 (17%), Positives = 119/382 (31%), Gaps = 60/382 (16%)

Query  167  TASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQP-CKQYNLCHRRS  225
            T +P    A  +  +   ++ +     T    +     P +     QP  ++ +      
Sbjct  327  TPTPIQKQAIPIALSGRDLIAIA---KTGSGKTATFIWPSISHIMDQPYLEKGDGPIALF  383

Query  226  QDPFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAAALAGLQEQRVYAL-  282
              P  +L  ++  +   + +  +L     +G    +QQ  +L     +      R+  + 
Sbjct  384  LAPTRELAHQIYLETLKYSKYFKLKTTVLYGGVSKQQQCKELKAGCEIIVATPGRLIDMI  443

Query  283  ----HLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----R  334
                        L++ +  +  D       F     V          R   LF       
Sbjct  444  KLKATKLNRVSYLVLDEADKMFD-------FGFGPQVLSIVNHVRPDRQTLLFSATFKPN  496

Query  335  KNELAHLATHGPE----------NPKLEMLEKILQRQFSSSN-----------SPRGIIF  373
              E A      P           N  +  + ++L+      N               +IF
Sbjct  497  VEEFARTILSDPIKISIGMIGSANSDITQIVQVLKSDSDKWNWLTNQLALLLSQGSVLIF  556

Query  374  TRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN  433
              T+ +   L   L +               G    +      Q ++ + IQ F++G +N
Sbjct  557  VSTKVAVEQLSSNLTKF--------------GFQTCTLHGDKNQIERSQTIQTFKEGKIN  602

Query  434  LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELK  491
            +L+AT VA  GLDIP    VV Y    +  S     GR  RA  +  A+ + T       
Sbjct  603  ILIATDVAARGLDIPLIKNVVNYDTSRDIESHTHRIGRTGRAGNTGVAYTLITPKDIHFS  662

Query  492  RELINEALETLMEQAVAAVQKM  513
             +LI   LE+  +     +  +
Sbjct  663  VDLIKN-LESASQFVPPELIDV  683


 Score = 67.9 bits (164),  Expect = 2e-10, Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 52/134 (39%), Gaps = 11/134 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTR------AAAYVAKRHLETVDGAKVVVLVNRVHLV  60
            Q + I  AL G+++I    TG+GKT        +  + + +LE  DG   + L     L 
Sbjct  332  QKQAIPIALSGRDLIAIAKTGSGKTATFIWPSISHIMDQPYLEKGDGPIALFLAPTRELA  391

Query  61   TQHGEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
             Q   E  +     +   T L G +  +     L    ++++ T   L   +        
Sbjct  392  HQIYLETLKYSKYFKLKTTVLYGGVSKQQQCKELKAGCEIIVATPGRLIDMIKLKA----  447

Query  120  VELTVFSLIVVDEC  133
             +L   S +V+DE 
Sbjct  448  TKLNRVSYLVLDEA  461


>sp|Q2HGF7|DBP5_CHAGB ATP-dependent RNA helicase DBP5 OS=Chaetomium 
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 
6347 / NRRL 1970) OX=306901 GN=DBP5 PE=3 SV=1
Length=479

 Score = 102 bits (255),  Expect = 9e-22, Method: Composition-based stats.
 Identities = 34/214 (16%), Positives = 79/214 (37%), Gaps = 32/214 (15%)

Query  332  DDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQ  391
            D     ++ +    P+  K      IL + +        +IF RTR+SA  +      Q+
Sbjct  280  DLTVKGISQMYMDCPDESK---KYDILCKLYGLMTIGSSVIFVRTRESASEI------QR  330

Query  392  GLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN  451
             ++    +   L GA           +++  ++  F+ G   +L+ T+V   G+D+   +
Sbjct  331  RMEADGHKVSALHGAHEG--------QNRDALLDDFRSGRSKVLITTNVLARGIDVSSVS  382

Query  452  VVVRYGLL--------TNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETL  502
            +V+ Y +          +  + +   GR  R  +   +       +        +AL  +
Sbjct  383  MVINYDIPMKGPGDKEPDMETYLHRIGRTGRFGRVGVSISFVYDRKS------YDALSKI  436

Query  503  MEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQ  536
             +     + ++   ++ A    +Q+   + RA  
Sbjct  437  ADHYGLDLVQLAPDDWDATETKVQEVIKSSRARP  470


 Score = 50.2 bits (118),  Expect = 4e-05, Method: Composition-based stats.
 Identities = 16/118 (14%), Positives = 41/118 (35%), Gaps = 8/118 (7%)

Query  18   KNIIIWLPTGAGKT--RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRW  75
            +N+I    +G GKT       +++  L      + ++L     L  Q     +    G++
Sbjct  112  RNMIAQSQSGTGKTAAFVLTVLSRVDLTKPTQPQALLLAPSRELARQIQSVIQ--TIGQF  169

Query  76   TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC  133
                      P +         ++++ T   +   +         +++   ++V+DE 
Sbjct  170  CENLNVEAAIPGSISRETGVRANVVVGTPGTVMDLI----RRRQFDVSQLKIMVIDEA  223


>sp|Q10RI7|RH38_ORYSJ DEAD-box ATP-dependent RNA helicase 38 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os03g0158200 PE=3 
SV=1
Length=505

 Score = 102 bits (255),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 87/231 (38%), Gaps = 38/231 (16%)

Query  306  LQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSS  365
            ++DF  R      QI   +  L       +    +      E  K+ +++  +       
Sbjct  296  VKDFVTRVIKDGNQIFVKKEELTL-----EKVKQYKVQVPDERAKIAVIKDKIFEF--GQ  348

Query  366  NSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQ  425
               + IIF RT+QS   +   L  +  +               SS    + Q +++++IQ
Sbjct  349  KVGQVIIFVRTKQSTKDVHNALTLEDYVC--------------SSIQGSLDQSEREKIIQ  394

Query  426  KFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL--------TNEISMVQARGRARA-DQ  476
            +F++G   +L++T V   G D    N+V+ Y +          +    +   GRA    +
Sbjct  395  EFKNGYTKVLISTDVLARGFDQAQVNLVINYDMPIKFGTRDEPDYEVYLHRIGRAGRFGR  454

Query  477  SVYAF--VATEGSRELKRELINEALETLMEQAVAAVQKMD-QAEYQAKIRD  524
                F  +  E    + R+     +ET  +  V  V+    + +++  ++D
Sbjct  455  KGAVFNLLCGETDNTVMRK-----IETYFQHNVPEVRNWQSEEDFERALKD  500


 Score = 46.3 bits (108),  Expect = 7e-04, Method: Composition-based stats.
 Identities = 29/165 (18%), Positives = 51/165 (31%), Gaps = 27/165 (16%)

Query  18   KNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKV---VVLVNRVHLVTQHGEEFRRMLDGR  74
            K++I     G+GKT                 KV   + +     L  Q+     RM    
Sbjct  141  KDLIAQAHNGSGKTTCFVLGML--SRVDPNRKVTQAICICPTRELAQQNKSVLMRMGKF-  197

Query  75   WTVTTLSGDMGPRAGFGHLARCH------DLLICTAELLQMALTSPEEEEHVELTVFSLI  128
                       P A   ++           ++I T+  L   +      + +      ++
Sbjct  198  --TGITCACAIPPAQKDYVPIAKMPKITDQVVIGTSGTLMKWIN----HKKILTNDIKIL  251

Query  129  VVDECHHTHKDTVYN----VIMSQYLELKLQRAQPLPQVLGLTAS  169
            V DE  H   +  +      IM       +QR+    QVL  +A+
Sbjct  252  VFDEADHMLAEDGFRSDSERIMRD-----IQRSAGGCQVLLFSAT  291


>sp|O22907|RH24_ARATH DEAD-box ATP-dependent RNA helicase 24 OS=Arabidopsis 
thaliana OX=3702 GN=RH24 PE=1 SV=2
Length=760

 Score = 103 bits (257),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 56/149 (38%), Gaps = 19/149 (13%)

Query  352  EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ  411
            E L  +L++     +    ++F   + +   +         L     +   L G      
Sbjct  458  EKLPWLLEKLPGMIDEGDVLVFASKKATVDEIE------AQLTLNSFKVAALHG------  505

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
                 Q  + E +QKF+ G  ++L+AT VA  GLDI     VV Y +  +    V   GR
Sbjct  506  --DKDQASRMETLQKFKSGVHHVLIATDVAARGLDIKSLKTVVNYDIAKDMDMHVHRIGR  563

Query  472  -ARAD---QSVYAFVATEGSRELKRELIN  496
              RA       Y  V    +R    EL+N
Sbjct  564  TGRAGDRDGVAYTLVTQREAR-FAGELVN  591


 Score = 55.2 bits (131),  Expect = 1e-06, Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 50/136 (37%), Gaps = 11/136 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRH------LETVDGAKVVVLVNRVHLV  60
            Q + +   L G+++I    TG+GKT A       H      L+  +G   V+      L 
Sbjct  255  QCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELA  314

Query  61   TQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
             Q   E ++        V+ + G M     F  L    ++++ T   L   L        
Sbjct  315  HQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKELKAGCEIVVATPGRLIDMLKMKA----  370

Query  120  VELTVFSLIVVDECHH  135
            + +   S +V+DE   
Sbjct  371  LTMMRASYLVLDEADR  386


>sp|Q2TBP1|DDX25_BOVIN ATP-dependent RNA helicase DDX25 OS=Bos 
taurus OX=9913 GN=DDX25 PE=2 SV=1
Length=483

 Score = 102 bits (254),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 71/183 (39%), Gaps = 32/183 (17%)

Query  345  GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI  404
            G    K + L  I    +      + IIF +TR++A  L + + Q               
Sbjct  320  GNRKDKYQALCNI----YGGITIGQAIIFCQTRRNAKWLTVEMMQD--------------  361

Query  405  GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL-----  459
            G   S  S  +T   +  +IQ+F+DG   +L+ T+V   G+D+    +VV + L      
Sbjct  362  GHQVSLLSGELTVDQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVNQAE  421

Query  460  -TNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAE  517
              +  + +   GR  R  +   AF   E  +          L  + +   ++++++D  +
Sbjct  422  EPDYETYLHRIGRTGRFGKKGLAFNMIEVDKL-------PLLMKIQDHFNSSIKQLDPED  474

Query  518  YQA  520
               
Sbjct  475  MDE  477


 Score = 49.0 bits (115),  Expect = 1e-04, Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 41/119 (34%), Gaps = 9/119 (8%)

Query  18   KNIIIWLPTGAGKTRAAAYVAK---RHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGR  74
            +N+I    +G GKT A           L+     + + L     L  Q G    RM    
Sbjct  137  QNLIAQSQSGTGKTAAFVLAMLSRVNALKLFP--QCLCLAPTYELALQTGRVVERMGKFC  194

Query  75   WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC  133
              V  +    G R   G       ++I T   +        + + ++LT   + V+DE 
Sbjct  195  VDVQVMYAIRGNRIPRGTDV-TKQIVIGTPGTVLD---WCFKRKLIDLTKIRVFVLDEA  249


>sp|A4RIF1|DBP5_PYRO7 ATP-dependent RNA helicase DBP5 OS=Pyricularia 
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 
GN=DBP5 PE=3 SV=2
Length=477

 Score = 102 bits (253),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 36/291 (12%), Positives = 97/291 (33%), Gaps = 33/291 (11%)

Query  256  QMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDF-YHREH  314
             +  ++   +S+   L   +   +            + +   + +  L     F  H + 
Sbjct  200  DLIRRRQFDVSQLKLLVVDEADNMLDQQGLGEQCVRVKNMLPKTIQTLLFSATFPDHVKS  259

Query  315  VTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFT  374
              +     A +  L   +     ++ +    P    L+   ++L + +        +IF 
Sbjct  260  YAEKFAPQANQMKLRQQELTVKGISQMYMDCPS---LKEKYEVLCKLYGLMTIGSSVIFV  316

Query  375  RTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNL  434
            +TR+SA  +   ++                G   S+       +++ +++  F+ G   +
Sbjct  317  KTRESADEIQRRMEAD--------------GHKVSALHGAFQGQERDQLLDDFRSGKSKV  362

Query  435  LVATSVAEEGLDIPHCNVVVRYGLL--------TNEISMVQARGR-ARADQSVYAFVATE  485
            L+ T+V   G+D+   ++V+ Y +          +  + +   GR  R  +   +     
Sbjct  363  LITTNVLARGIDVSSVSMVINYDIPMKGPGDQSPDAETYLHRIGRTGRFGRVGVSISFVH  422

Query  486  GSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQ  536
              +         AL ++ E     + ++   ++      +Q    + RA  
Sbjct  423  DRKSFT------ALSSIAEHYGIDLIQLSPDDWDDTEVKVQDVIKSSRAKP  467


 Score = 54.4 bits (129),  Expect = 2e-06, Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 42/118 (36%), Gaps = 8/118 (7%)

Query  18   KNIIIWLPTGAGKT--RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRW  75
            +N+I    +G GKT       +++      +  + + L     L  Q     + +  G++
Sbjct  109  RNMIAQSQSGTGKTGAFVVTILSRVDFNQPNQPQALALAPSRELARQIQSVIQSI--GQF  166

Query  76   TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC  133
                +     P A         ++++ T   +   +         +++   L+VVDE 
Sbjct  167  CTGLVVDAAIPGAISRETGVKANVVVGTPGTVMDLI----RRRQFDVSQLKLLVVDEA  220


>sp|A1CNV8|DRS1_ASPCL ATP-dependent RNA helicase drs1 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=drs1 PE=3 SV=1
Length=826

 Score = 103 bits (257),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 66/155 (43%), Gaps = 20/155 (13%)

Query  343  THGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL  402
              G E  +L  L  +    F+     R I+F R ++ AH + +                 
Sbjct  531  RPGREGKRLGYLLYLCSEIFTG----RVIVFFRQKKEAHRVRIVFG--------------  572

Query  403  LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE  462
            L+G   +     M+Q  + + ++ F++G +  L+AT +A  GLDI     V+ Y    + 
Sbjct  573  LLGLKAAELHGSMSQEQRIKSVESFREGKVAFLLATDLASRGLDIKGVETVINYEAPQSH  632

Query  463  ISMVQARGR-ARADQSVYA-FVATEGSRELKRELI  495
               +   GR ARA +S  A  +A +  R++ +  +
Sbjct  633  EIYLHRVGRTARAGRSGRACTIAADPDRKVVKAAV  667


 Score = 54.8 bits (130),  Expect = 2e-06, Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 49/134 (37%), Gaps = 8/134 (6%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHL----ETVDGAKVVVLVNRVHLVTQ  62
            Q + I  AL GK+I+    TG+GKT A        L      V  ++V +L+    L  Q
Sbjct  333  QQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLLFRPRKVPTSRVAILMPTRELAVQ  392

Query  63   HGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVE  121
                  ++      T   L G    R     L +  D++I T       + +        
Sbjct  393  CYNVATKLATHTDVTFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSPS---FT  449

Query  122  LTVFSLIVVDECHH  135
            +    ++V+DE   
Sbjct  450  VDTLEILVLDEADR  463


>sp|Q9QY16|DDX25_RAT ATP-dependent RNA helicase DDX25 OS=Rattus 
norvegicus OX=10116 GN=Ddx25 PE=1 SV=2
Length=483

 Score = 102 bits (254),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 70/178 (39%), Gaps = 32/178 (18%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K + L  I    +      + IIF +TR++A  L + + Q               G   S
Sbjct  325  KYQALCNI----YGGITIGQAIIFCQTRRNAKWLTVEMMQD--------------GHQVS  366

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL------TNEI  463
              S  +T   +  +IQ+F+DG   +L+ T+V   G+D+    +VV + L        +  
Sbjct  367  LLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVNQSEEPDYE  426

Query  464  SMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA  520
            + +   GR  R  +   AF   E  +          L  + +   ++++++D  +   
Sbjct  427  TYLHRIGRTGRFGKKGLAFNMIEVDKL-------PLLMKIQDHFNSSIKQLDPEDMDE  477


 Score = 48.6 bits (114),  Expect = 1e-04, Method: Composition-based stats.
 Identities = 26/119 (22%), Positives = 41/119 (34%), Gaps = 9/119 (8%)

Query  18   KNIIIWLPTGAGKTRAAAYVAKRH---LETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGR  74
            +N+I    +G GKT A           LE     + + L     L  Q G    RM    
Sbjct  137  QNLIAQSQSGTGKTAAFVLAMLNRVNALELFP--QCLCLAPTYELALQTGRVVERMGKFC  194

Query  75   WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC  133
              V  +    G R   G       ++I T   +        + + ++LT   + V+DE 
Sbjct  195  VDVEVMYAIRGNRIPRGTDV-TKQIVIGTPGTVLD---WCFKRKLIDLTKIRVFVLDEA  249


>sp|Q2GQ93|DHH1_CHAGB ATP-dependent RNA helicase DHH1 OS=Chaetomium 
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 
6347 / NRRL 1970) OX=306901 GN=DHH1 PE=3 SV=1
Length=512

 Score = 102 bits (254),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 53/317 (17%), Positives = 100/317 (32%), Gaps = 29/317 (9%)

Query  229  FGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN  288
              D + +L D +H  +  P            +QV  LSE       +  ++ ++      
Sbjct  119  LRDDIVRLQDPVHIVVGTPGRILDLAG----KQVADLSECPMFIMDEADKLLSIEFTPVI  174

Query  289  DALLI-HDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPE  347
            + LL  H   R V   +A      ++   K      E  +  + +     +     +  E
Sbjct  175  EQLLRFHPKDRQVMLFSATFPISVKDFSDKNMTSPYE--INLMDELTLRGITQYYAYVEE  232

Query  348  NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG  407
              K+      L   FS     + IIF  +      L   + +              +G  
Sbjct  233  KQKV----HCLNTLFSKLQINQSIIFCNSTNRVELLAKKITE--------------LGYS  274

Query  408  NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
                   M Q+ +  V   F++G    LV + +   G+DI   NVV+ +    N  + + 
Sbjct  275  CFYSHAKMAQQARNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLH  334

Query  468  ARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQ  526
              GR  R      A           R  +      L  +     Q +D++ Y  +  +  
Sbjct  335  RIGRSGRYGHLGLAINLINWD---DRFNLYNIERDLGTEIQPIPQTIDKSLYVYENPESI  391

Query  527  QAALTKRAAQAAQRENQ  543
               ++       Q++ Q
Sbjct  392  PRPISNLKPAGIQQQQQ  408


 Score = 52.9 bits (125),  Expect = 7e-06, Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 52/131 (40%), Gaps = 10/131 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG-AKV--VVLVNRVHLVTQH  63
            Q E I  AL G++I+     G GKT  AA+V     +     +K+  ++LV    L  Q 
Sbjct  38   QEESIPVALVGRDILARAKNGTGKT--AAFVIPALEKINPKVSKIQCLILVPTRELAMQT  95

Query  64   GEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
             +  + +       V   +G  G R     L     +++ T   +         ++  +L
Sbjct  96   SQVCKTLGKHLGINVMVTTGGTGLRDDIVRLQDPVHIVVGTPGRILD----LAGKQVADL  151

Query  123  TVFSLIVVDEC  133
            +   + ++DE 
Sbjct  152  SECPMFIMDEA  162


>sp|A7EY76|DBP5_SCLS1 ATP-dependent RNA helicase dbp5 OS=Sclerotinia 
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 
GN=dbp5 PE=3 SV=1
Length=470

 Score = 102 bits (253),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 68/195 (35%), Gaps = 30/195 (15%)

Query  355  EKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH  414
             +IL + +        IIF + R +A  +   L  +              G   ++    
Sbjct  296  YEILVKLYGLMTIGSSIIFVKRRDTASHIAERLTAE--------------GHKVAAIHGA  341

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL--------TNEISMV  466
                ++  V++ F+ G   +L+ T+V   G+D+   ++V+ Y +          +  + +
Sbjct  342  FEGAERDTVLEDFRQGKAKVLITTNVLARGIDVQSVSMVINYDIPMKGRSDFEPDPETYL  401

Query  467  QARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDL  525
               GR  R  +   +       +        +AL  +       + K++Q ++     ++
Sbjct  402  HRIGRTGRFGRVGVSISFVFDRKS------YDALNKIAHHYNIDLIKLNQDDWDE-TEEI  454

Query  526  QQAALTKRAAQAAQR  540
             +  +    A    R
Sbjct  455  VKKVIKSSRAGTNLR  469


>sp|Q6C0X2|DHH1_YARLI ATP-dependent RNA helicase DHH1 OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DHH1 PE=3 
SV=1
Length=522

 Score = 102 bits (254),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 59/396 (15%), Positives = 115/396 (29%), Gaps = 46/396 (12%)

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
            SP    A  +  A   +L    N       +     P LQ+ + +  K   L    +++ 
Sbjct  52   SPIQEEAIPIALAGRDILARAKN---GTGKTAAFVIPALQQVNPKVNKIQALIMVPTREL  108

Query  229  FGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN  288
                  ++   +  HL +  +    GT + +  +++L +   +      RV  L  +   
Sbjct  109  ALQT-SQVCKTLGKHLGIKVMVTTGGTNLRDD-IMRLEDTVHVLVGTPGRVLDLAGKGVA  166

Query  289  DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPEN  348
            D  L    +  +D    L        + +      E R + LF                +
Sbjct  167  D--LSESPMFIMDEADKLLSPDFTPIIEQVLHFFPEDRQILLFSATFPLTVKAFMDRNLH  224

Query  349  PKLEM----------------------LEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLW  386
               E+                          L   FS  +  + IIF  +      L   
Sbjct  225  KPYEINLMDELTLRGITQYYAFVDEKQKLHCLNTLFSKLDINQSIIFCNSTVRVELLARK  284

Query  387  LQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLD  446
            + +              +G         M Q  +  V  +F++GT   LV + +   G+D
Sbjct  285  ITE--------------LGYSCYYSHAKMIQSHRNRVFHEFRNGTCRNLVCSDLLTRGID  330

Query  447  IPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQ  505
            I   NVV+ +    N  + +   GR  R      A      +       I + L T ++ 
Sbjct  331  IQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGIAINLINWNDRYNLYKIEQELGTEIK-  389

Query  506  AVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRE  541
                 Q            ++ +        +  + +
Sbjct  390  -PIPAQIDKNLYVAESSENIPRPFPIADMPRGKESK  424


 Score = 53.6 bits (127),  Expect = 4e-06, Method: Composition-based stats.
 Identities = 29/133 (22%), Positives = 53/133 (40%), Gaps = 14/133 (11%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLE---TVDGAKVVVLVNRVHLVTQH  63
            Q E I  AL G++I+     G GKT  AA+V     +    V+  + +++V    L  Q 
Sbjct  55   QEEAIPIALAGRDILARAKNGTGKT--AAFVIPALQQVNPKVNKIQALIMVPTRELALQT  112

Query  64   GEEFR---RMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
             +  +   + L  +  VT  +G    R     L     +L+ T   +         +   
Sbjct  113  SQVCKTLGKHLGIKVMVT--TGGTNLRDDIMRLEDTVHVLVGTPGRVLD----LAGKGVA  166

Query  121  ELTVFSLIVVDEC  133
            +L+   + ++DE 
Sbjct  167  DLSESPMFIMDEA  179


>sp|P0CQ80|DHH1_CRYNJ ATP-dependent RNA helicase DHH1 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=DHH1 PE=3 SV=1
Length=625

 Score = 103 bits (256),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 52/332 (16%), Positives = 106/332 (32%), Gaps = 32/332 (10%)

Query  165  GLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRR  224
            G TAS      ++++ +++H+  L         +     C  L   +  P  Q  +    
Sbjct  85   GKTASFIIPTLNRINTSLSHIQALILVPTRELALQTSQVCKTL--GAHIPNLQVMIT--T  140

Query  225  SQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHL  284
                  D + +L   +H  +  P      G+    + +  L++       +  ++ +   
Sbjct  141  GGTTLRDDILRLQQPVHILVGTPGRILDLGS----KGIASLNKCGVFVMDEADKLLSEDF  196

Query  285  RRYNDALL-IHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLAT  343
                +  L +    R V   +A   +  +E   K Q +     +  + +     +     
Sbjct  197  MPVIEQTLALCPQERQVMLFSATFPWTVKEF--KDQHMVQPYEINLMDELTLKGVTQYYA  254

Query  344  HGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLL  403
            +  E+ K+      L   FS     + IIF  +      L   + +              
Sbjct  255  YVEESQKV----HCLNTLFSKLQINQSIIFCNSTNRVELLAKKVTE--------------  296

Query  404  IGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI  463
            +G         M Q  +  V   F++G    LV + +   G+DI   NVV+ +       
Sbjct  297  LGYSCFYSHAKMQQAHRNRVFHDFRNGMTRNLVCSDLLTRGIDIQAVNVVINFDFPRTAE  356

Query  464  SMVQARGRARADQS---VYAFVATEGSRELKR  492
            S +   GR+          + +  E    L R
Sbjct  357  SYLHRIGRSGRFGHLGLAISLLTLEDRHNLYR  388


 Score = 49.0 bits (115),  Expect = 1e-04, Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 45/131 (34%), Gaps = 9/131 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT--RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHG  64
            Q + I  AL G++I+     G GKT          R   ++   + ++LV    L  Q  
Sbjct  63   QEQAIPMALTGRDILARAKNGTGKTASFI-IPTLNRINTSLSHIQALILVPTRELALQTS  121

Query  65   EEFRRML--DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
            +  + +        V   +G    R     L +   +L+ T   +         +    L
Sbjct  122  QVCKTLGAHIPNLQVMITTGGTTLRDDILRLQQPVHILVGTPGRILD----LGSKGIASL  177

Query  123  TVFSLIVVDEC  133
                + V+DE 
Sbjct  178  NKCGVFVMDEA  188


>sp|P0CQ81|DHH1_CRYNB ATP-dependent RNA helicase DHH1 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=DHH1 PE=3 SV=1
Length=625

 Score = 103 bits (256),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 52/332 (16%), Positives = 106/332 (32%), Gaps = 32/332 (10%)

Query  165  GLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRR  224
            G TAS      ++++ +++H+  L         +     C  L   +  P  Q  +    
Sbjct  85   GKTASFIIPTLNRINTSLSHIQALILVPTRELALQTSQVCKTL--GAHIPNLQVMIT--T  140

Query  225  SQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHL  284
                  D + +L   +H  +  P      G+    + +  L++       +  ++ +   
Sbjct  141  GGTTLRDDILRLQQPVHILVGTPGRILDLGS----KGIASLNKCGVFVMDEADKLLSEDF  196

Query  285  RRYNDALL-IHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLAT  343
                +  L +    R V   +A   +  +E   K Q +     +  + +     +     
Sbjct  197  MPVIEQTLALCPQERQVMLFSATFPWTVKEF--KDQHMVQPYEINLMDELTLKGVTQYYA  254

Query  344  HGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLL  403
            +  E+ K+      L   FS     + IIF  +      L   + +              
Sbjct  255  YVEESQKV----HCLNTLFSKLQINQSIIFCNSTNRVELLAKKVTE--------------  296

Query  404  IGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI  463
            +G         M Q  +  V   F++G    LV + +   G+DI   NVV+ +       
Sbjct  297  LGYSCFYSHAKMQQAHRNRVFHDFRNGMTRNLVCSDLLTRGIDIQAVNVVINFDFPRTAE  356

Query  464  SMVQARGRARADQS---VYAFVATEGSRELKR  492
            S +   GR+          + +  E    L R
Sbjct  357  SYLHRIGRSGRFGHLGLAISLLTLEDRHNLYR  388


 Score = 49.0 bits (115),  Expect = 1e-04, Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 45/131 (34%), Gaps = 9/131 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT--RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHG  64
            Q + I  AL G++I+     G GKT          R   ++   + ++LV    L  Q  
Sbjct  63   QEQAIPMALTGRDILARAKNGTGKTASFI-IPTLNRINTSLSHIQALILVPTRELALQTS  121

Query  65   EEFRRML--DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
            +  + +        V   +G    R     L +   +L+ T   +         +    L
Sbjct  122  QVCKTLGAHIPNLQVMITTGGTTLRDDILRLQQPVHILVGTPGRILD----LGSKGIASL  177

Query  123  TVFSLIVVDEC  133
                + V+DE 
Sbjct  178  NKCGVFVMDEA  188


>sp|Q6CSZ7|DHH1_KLULA ATP-dependent RNA helicase DHH1 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 
1267 / NRRL Y-1140 / WM37) OX=284590 GN=DHH1 PE=3 SV=1
Length=514

 Score = 102 bits (254),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 61/367 (17%), Positives = 116/367 (32%), Gaps = 44/367 (12%)

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
            SP    A  +  A   +L    N       +     P L++   +  K   L    +++ 
Sbjct  60   SPIQEEAIPVAIAGKDILARAKN---GTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRE-  115

Query  229  FGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN  288
                  +++  +  H  +  +    GT + +  +++L+E   +      RV  L  RR  
Sbjct  116  LALQTSQVVRTLGKHCGISCMVTTGGTNLRDD-IMRLNEPVHILVGTPGRVLDLASRRVT  174

Query  289  DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD------RKNELAHLA  342
            D  L    +  +D    +     +    +      ERR L LF        ++  + HL 
Sbjct  175  D--LSECHLFIMDEADKMLSRDFKVLAEQILGFLPERRQLLLFSATFPVTVKEFMVKHLK  232

Query  343  THGPEN----------------PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLW  386
                 N                 + +     L   FS     + IIF  +      L   
Sbjct  233  NPHEINLMDELTLKGISQFYAFVEEKQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKK  292

Query  387  LQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLD  446
            + +              +G         M Q ++ +V  +F+ G +  LV + +   G+D
Sbjct  293  ITE--------------LGFSCYYSHARMKQSERNKVFHEFRQGKVRTLVCSDLLTRGID  338

Query  447  IPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQ  505
            I   NVV+ +       + +   GR  R      A      +       I + L T +  
Sbjct  339  IQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELNTEIAP  398

Query  506  AVAAVQK  512
              + + K
Sbjct  399  IPSQIDK  405


 Score = 51.0 bits (120),  Expect = 3e-05, Method: Composition-based stats.
 Identities = 30/132 (23%), Positives = 49/132 (37%), Gaps = 12/132 (9%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA----KVVVLVNRVHLVTQ  62
            Q E I  A+ GK+I+     G GKT  AA+V    LE V       + +++V    L  Q
Sbjct  63   QEEAIPVAIAGKDILARAKNGTGKT--AAFVI-PTLEKVKPKLNKIQALIMVPTRELALQ  119

Query  63   HGEEFRRMLDGRWTVTTL-SGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVE  121
              +  R +         + +G    R     L     +L+ T   +             +
Sbjct  120  TSQVVRTLGKHCGISCMVTTGGTNLRDDIMRLNEPVHILVGTPGRVLD----LASRRVTD  175

Query  122  LTVFSLIVVDEC  133
            L+   L ++DE 
Sbjct  176  LSECHLFIMDEA  187


>sp|A4RMV8|ROK1_PYRO7 ATP-dependent RNA helicase ROK1 OS=Pyricularia 
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 
GN=ROK1 PE=3 SV=1
Length=775

 Score = 103 bits (256),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 68/417 (16%), Positives = 141/417 (34%), Gaps = 57/417 (14%)

Query  171  GTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFG  230
            G   A++ D           ++         +   + +E S++P K+ N       D   
Sbjct  343  GMRVAAEEDSTEKKSEDQEEDVFESEDEDSLSEDDEEREKSEKPSKKPNKAPITKADILV  402

Query  231  DLLKKLMDQIHDHLEMPELS----RKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR  286
                 L++ +       +      R       +  + +L     +      R   L +  
Sbjct  403  TTPMLLLNFLSKGTSTTKKRLPRVRSLILDEADVLLDQLFREQTMGIWSACRNPNLRVSF  462

Query  287  YNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH-LATHG  345
            ++  +  +     +D L A  D                R ++ L D     ++H L    
Sbjct  463  WSATMASNIETHILDNLRAQAD--------DAPAPPLIRLVVGLKDTAVPNISHRLVYTA  514

Query  346  PENPKLEMLEKILQR-------------QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQG  392
             E+ KL  L ++L               +  +   P  ++F +T + A +L   L+    
Sbjct  515  TESGKLLALRQLLHPASFSTTTSSTTTPEDETPLRPPFLVFVQTIERATALHEELK----  570

Query  393  LQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNV  452
                DI A     +  +   + M +  +  VI++F+   + +L+ T V   G+D    N 
Sbjct  571  ---YDIPAAAGGASRVAVLHSSMPESARAAVIRRFRAADVWVLITTDVLARGVDFAGVNG  627

Query  453  VVRYGLLTNEISMVQ---ARGRARADQSVYAFVATEGSRELKRELIN-------------  496
            VV Y +  +  + V      GRA     +     T+      + + N             
Sbjct  628  VVNYDVPGSAAAYVHRAGRTGRAGRKGGIAVTFYTKEDIPFVKNVANVIALSERQAGAGE  687

Query  497  EALETLMEQAVAAVQKMDQAEYQAKIRDLQQAA--------LTKRAAQAAQRENQRQ  545
             A +  +  A+  V K D+ E + K  + +++         +T ++A   ++EN R+
Sbjct  688  SATQKWLLDALPDVSKKDKKELREKGVESRRSVAASKGKARITSKSAWERRKENNRK  744


>sp|A6RC50|DBP5_AJECN ATP-dependent RNA helicase DBP5 OS=Ajellomyces 
capsulatus (strain NAm1 / WU24) OX=2059318 GN=DBP5 PE=3 
SV=1
Length=497

 Score = 102 bits (253),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 71/192 (37%), Gaps = 29/192 (15%)

Query  352  EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ  411
            E    IL + +        IIF +TR SA  +   +  +              G    S 
Sbjct  316  EHKFDILVKFYGLLTIGSSIIFVKTRASAVEIERRMVAE--------------GHTVVSL  361

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT-----------  460
            +  +  + + E+I KF+ G   +L+ T+V   G+D+   ++V+ Y +             
Sbjct  362  TGGVEGQKRDEIIDKFRQGDAKVLITTNVLARGIDVQTVSMVINYDIPELHAPKATKRIA  421

Query  461  NEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQ  519
            +  + +   GR  R  +   A        E +   + + ++T     +  V   D  E +
Sbjct  422  DAQTYLHRIGRTGRFGRVGVAVSFVASKEEWQ---MLQDIKTYFNTEIQRVNTQDWDEVE  478

Query  520  AKIRDLQQAALT  531
              ++ + +++  
Sbjct  479  EVVKTIIRSSRA  490


>sp|Q75C39|DBP5_EREGS ATP-dependent RNA helicase DBP5 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=DBP5 PE=3 SV=2
Length=466

 Score = 101 bits (252),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 67/181 (37%), Gaps = 23/181 (13%)

Query  352  EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ  411
                 +L   +        IIF +T+Q+A+ L   L+++              G   S  
Sbjct  300  RHKFTVLCDLYGLLTIGSSIIFVQTKQTANMLYTELKRE--------------GHQVSIL  345

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL------TNEISM  465
               +   D+  +I  F++G   +L+ T+V   G+DIP  ++VV Y L        +  + 
Sbjct  346  HGDLQSADRDRLIGDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPMTANGQPDPSTY  405

Query  466  VQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD  524
            V   GR  R  ++  A       +    E +        +  +  V   D  E +  ++ 
Sbjct  406  VHRIGRTGRFGRTGVAISFIHDKKSY--ETLAAIQSYFGDIQITKVPTDDMDEMEKIVKK  463

Query  525  L  525
            +
Sbjct  464  V  464


>sp|Q58Z64|DHH1_CRYNH ATP-dependent RNA helicase VAD1 OS=Cryptococcus 
neoformans var. grubii serotype A (strain H99 / ATCC 
208821 / CBS 10515 / FGSC 9487) OX=235443 GN=VAD1 PE=1 SV=1
Length=616

 Score = 102 bits (255),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 52/332 (16%), Positives = 106/332 (32%), Gaps = 32/332 (10%)

Query  165  GLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRR  224
            G TAS      ++++ +++H+  L         +     C  L   +  P  Q  +    
Sbjct  85   GKTASFIIPTLNRINTSLSHIQALILVPTRELALQTSQVCKTL--GAHIPNLQVMIT--T  140

Query  225  SQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHL  284
                  D + +L   +H  +  P      G+    + +  L++       +  ++ +   
Sbjct  141  GGTTLRDDILRLQQPVHILVGTPGRILDLGS----KGIAGLNKCGIFVMDEADKLLSEDF  196

Query  285  RRYNDALL-IHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLAT  343
                +  L +    R V   +A   +  +E   K Q +     +  + +     +     
Sbjct  197  MPVIEQTLALCPQERQVMLFSATFPWTVKEF--KDQHMVQPYEINLMDELTLKGVTQYYA  254

Query  344  HGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLL  403
            +  E+ K+      L   FS     + IIF  +      L   + +              
Sbjct  255  YVEESQKV----HCLNTLFSKLQINQSIIFCNSTNRVELLAKKVTE--------------  296

Query  404  IGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI  463
            +G         M Q  +  V   F++G    LV + +   G+DI   NVV+ +       
Sbjct  297  LGYSCFYSHAKMQQAHRNRVFHDFRNGMTRNLVCSDLLTRGIDIQAVNVVINFDFPRTAE  356

Query  464  SMVQARGRARADQS---VYAFVATEGSRELKR  492
            S +   GR+          + +  E    L R
Sbjct  357  SYLHRIGRSGRFGHLGLAISLLTLEDRHNLYR  388


 Score = 47.9 bits (112),  Expect = 3e-04, Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 45/131 (34%), Gaps = 9/131 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT--RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHG  64
            Q + I  AL G++I+     G GKT          R   ++   + ++LV    L  Q  
Sbjct  63   QEQAIPMALTGRDILARAKNGTGKTASFI-IPTLNRINTSLSHIQALILVPTRELALQTS  121

Query  65   EEFRRML--DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
            +  + +        V   +G    R     L +   +L+ T   +         +    L
Sbjct  122  QVCKTLGAHIPNLQVMITTGGTTLRDDILRLQQPVHILVGTPGRILD----LGSKGIAGL  177

Query  123  TVFSLIVVDEC  133
                + V+DE 
Sbjct  178  NKCGIFVMDEA  188


>sp|Q8Y755|CSHB_LISMO DEAD-box ATP-dependent RNA helicase CshB 
OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 
/ EGD-e) OX=169963 GN=cshB PE=2 SV=1
Length=435

 Score = 101 bits (251),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 54/421 (13%), Positives = 139/421 (33%), Gaps = 34/421 (8%)

Query  149  YLELKLQRAQPLPQVL------GLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQN  202
            + E    + + +P +L      G + +      + +   IN+V      +        + 
Sbjct  25   FYEPTEVQQKLIPGILKGESIIGQSQTGTGKTHTFILPIINNVNPEKDAVQAVITAPSRE  84

Query  203  CCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQV  262
               Q+    ++  K             G   ++ +D++    ++   +      +  +Q 
Sbjct  85   LATQIYNEIRKVTKYSEKEIAVQLVIGGTDKQRAIDKLKKQPQIIVGTPGRINDLIREQA  144

Query  263  VKLSEAAALAGLQEQRVYALHLRRYNDAL-LIHDTVRAVDALAALQDFYHREHVTKTQIL  321
            + +  A  L   +      +      D +         +   +A      +  ++K    
Sbjct  145  LFVHTAKTLVIDEADMTLDMGFLNDVDHIAGKMPANLQMLVFSATIPQKLKPFLSKYMEN  204

Query  322  CAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAH  381
                 +       K     +      N KL++L+ +L      S     I+FT T+ +A 
Sbjct  205  PRYEHIQPKVAASKTVEHRIMATRSRN-KLDLLKNVLV----GSQPYLAIVFTNTKTTAD  259

Query  382  SLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVA  441
             +   L ++              G   +     +  R+++  +++ ++     +VAT +A
Sbjct  260  EVANGLIER--------------GLKVAKIHGDVNPRERKRTMKQIENLDYQYVVATDLA  305

Query  442  EEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEAL  499
              G+DI   + VV Y L  +    +   GR  RA  S  A  +      +   +L    +
Sbjct  306  ARGIDIQGISHVVNYELPDDLDFYIHRTGRTGRAGHSGIALTLFEPADEDRLNQLEKMGI  365

Query  500  E----TLMEQAVAAVQKMDQAEYQAKIRDL--QQAALTKRAAQAAQRENQRQQFPVEHVQ  553
            E        +    ++  ++   +   R+    +    ++ A+   + N +++   +  +
Sbjct  366  EFKHVDWKNKEFVTLEDRNRRAKREAKRETADPREIGMRKKAKQKGKPNYKKKINYKMNE  425

Query  554  L  554
            +
Sbjct  426  I  426


 Score = 61.0 bits (146),  Expect = 2e-08, Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 58/180 (32%), Gaps = 27/180 (15%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAY-VAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q ++I   L+G++II    TG GKT      +        D  + V+      L TQ   
Sbjct  32   QQKLIPGILKGESIIGQSQTGTGKTHTFILPIINNVNPEKDAVQAVITAPSRELATQIYN  91

Query  66   EFR---RMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
            E R   +  +    V  + G    +     L +   +++ T   +   +       H   
Sbjct  92   EIRKVTKYSEKEIAVQLVIGGTDKQRAIDKLKKQPQIIVGTPGRINDLIREQALFVHTAK  151

Query  123  TVFSLIVVDEC------------HHTHKDTVYNVIMSQY-------LELKLQRAQPLPQV  163
            T    +V+DE              H       N+ M  +       L+  L +    P+ 
Sbjct  152  T----LVIDEADMTLDMGFLNDVDHIAGKMPANLQMLVFSATIPQKLKPFLSKYMENPRY  207


>sp|Q9QY15|DDX25_MOUSE ATP-dependent RNA helicase DDX25 OS=Mus 
musculus OX=10090 GN=Ddx25 PE=1 SV=2
Length=484

 Score = 101 bits (252),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 69/178 (39%), Gaps = 32/178 (18%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K + L  I    +      + IIF +TR++A  L + + Q               G   S
Sbjct  326  KYQALCNI----YGGITIGQAIIFCQTRRNAKWLTVEMMQD--------------GHQVS  367

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL------TNEI  463
              S  +T   +  +IQ+F+DG   +L+ T+V   G+D+    +VV + L        +  
Sbjct  368  LLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVNQSEEPDYE  427

Query  464  SMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA  520
            + +   GR  R  +   AF   E  +          L  + +   + ++++D  +   
Sbjct  428  TYLHRIGRTGRFGKKGLAFNMIEVDKL-------PLLMKIQDHFNSNIKQLDPEDMDE  478


 Score = 50.2 bits (118),  Expect = 5e-05, Method: Composition-based stats.
 Identities = 26/119 (22%), Positives = 41/119 (34%), Gaps = 9/119 (8%)

Query  18   KNIIIWLPTGAGKTRAAAYVAK---RHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGR  74
            +N+I    +G GKT A           LE     + + L     L  Q G    RM    
Sbjct  138  QNLIAQSQSGTGKTAAFVLAMLSRVNALELFP--QCLCLAPTYELALQTGRVVERMGKFC  195

Query  75   WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC  133
              V  +    G R   G       ++I T   +        + + ++LT   + V+DE 
Sbjct  196  VDVEVMYAIRGNRIPRGTEV-TKQIIIGTPGTVLD---WCFKRKLIDLTKIRVFVLDEA  250


>sp|A1CFV3|DBP5_ASPCL ATP-dependent RNA helicase dbp5 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=dbp5 PE=3 SV=1
Length=487

 Score = 101 bits (252),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 71/202 (35%), Gaps = 32/202 (16%)

Query  352  EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ  411
            E   K L + +        IIF +TR SA  +   +  +              G   +S 
Sbjct  306  EDKYKTLVQLYGLLTVGSSIIFVQTRTSASEIEKRMVAE--------------GHTVASL  351

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT-----------  460
            +  +    + E+I KF+ G   +L+ T+V   G+D+   ++V+ Y +             
Sbjct  352  TGGIDVTKRDEIIDKFRSGEAKVLITTNVLARGIDVSTVSMVINYDIPELHRPGVPERQA  411

Query  461  NEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQ  519
            +  + +   GR  R  +   +        E       + L  +       +Q++D  ++ 
Sbjct  412  DFQTYLHRIGRTGRFGRVGVSISFVSNREEW------DMLNQIQRYFNTEIQRVDTKDWD  465

Query  520  AKIRDLQQAALTKRAAQAAQRE  541
                 +++     RA     ++
Sbjct  466  EVEDIIKKTIKNTRANAQFGKQ  487


>sp|Q5AVM1|DBP5_EMENI ATP-dependent RNA helicase dbp5 OS=Emericella 
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 
194 / M139) OX=227321 GN=dbp5 PE=3 SV=1
Length=477

 Score = 101 bits (251),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 70/195 (36%), Gaps = 29/195 (15%)

Query  352  EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ  411
            E   + L + +        IIF +TR SA  +   +  +              G   +S 
Sbjct  298  EDKYRTLVQLYGLLTVGSSIIFVKTRASAVEIERRMVAE--------------GHTVASL  343

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT-----------  460
            +  +    + ++I +F+ G   +L+ T+V   G+D+   ++V+ Y +             
Sbjct  344  TGGIEGSQRDQIIDQFRAGHAKVLITTNVLARGIDVSTVSMVINYDIPELHQPPNRPRQA  403

Query  461  NEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQ  519
            +  + +   GR  R  +   +        E   E++N+ ++      +  +   D  E +
Sbjct  404  DFQTYLHRIGRTGRFGRVGVSISFVSNREE--WEMLNQ-IQKYFNTDIQRIDTKDWDEVE  460

Query  520  AKIRDLQQAALTKRA  534
              I+   +    +  
Sbjct  461  DIIKKTIKNTRAQAG  475


>sp|Q6C7X8|DBP10_YARLI ATP-dependent RNA helicase DBP10 OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DBP10 
PE=3 SV=1
Length=926

 Score = 102 bits (255),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 50/311 (16%), Positives = 102/311 (33%), Gaps = 23/311 (7%)

Query  179  DGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMD  238
            D        + +N D       +    +++        +Y +C   +   F     + M+
Sbjct  210  DSLEEQFKMMMSNPDIIIATPGRFLHLKVEMELSLASVEY-ICFDEADRLFELGFGEQMN  268

Query  239  QIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVR  298
            ++   L     +  F   +  + +V+ ++A     +  +      L  + +         
Sbjct  269  ELLASLPSNRQTLLFSATL-PKTLVEFAKAGLHDPILVRLDAETKLPEHLEMTFFAVKEN  327

Query  299  AVDA-LAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKI  357
              DA LA +     +      + L    RL     D            P+  K       
Sbjct  328  QRDACLAFILKEVIQMPFATPEQLKELERLDERAIDDGERDEDRKQKRPKFKKER-----  382

Query  358  LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ  417
            L       +    I+F  T+     +++ LQ               +G   S     + Q
Sbjct  383  LPPAHQLPSEKSTIVFCPTKHHVEYVIVLLQT--------------LGYAVSYIYGTLDQ  428

Query  418  RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQ  476
              ++  + +F+ G  ++LV T VA  G+D+P    V+ Y L  +    +   GR ARA  
Sbjct  429  HARKNQLYRFRTGKTSILVVTDVAARGIDVPVLANVINYSLPPSPKVFIHRVGRTARAGN  488

Query  477  SVYAFVATEGS  487
              +A+   + +
Sbjct  489  RGWAYSIIKDN  499


 Score = 51.7 bits (122),  Expect = 2e-05, Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 44/125 (35%), Gaps = 8/125 (6%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRHLE---TVDGAKVVVLVNRVHLVTQHGEEFRRML  71
            LEGK+++    TG+GKT A        L+      GA+ V+L     L  Q  +  +   
Sbjct  137  LEGKDVVGMARTGSGKTAAFVLPMLEKLKVHSAKVGARAVILSPSRELALQTLKVVKDFS  196

Query  72   DG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV  130
             G    +  L G       F  +    D++I T           + E  + L     I  
Sbjct  197  AGTDLRLAMLVGGDSLEEQFKMMMSNPDIIIATPGRFLH----LKVEMELSLASVEYICF  252

Query  131  DECHH  135
            DE   
Sbjct  253  DEADR  257


>sp|Q9LFN6|RH56_ARATH DEAD-box ATP-dependent RNA helicase 56 OS=Arabidopsis 
thaliana OX=3702 GN=RH56 PE=1 SV=2
Length=427

 Score = 100 bits (248),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 39/252 (15%), Positives = 90/252 (36%), Gaps = 35/252 (14%)

Query  286  RYNDALLIHDTVRAVDALAALQD--------------FYHREHVTKTQILCAERRLLALF  331
            +     ++ +  + +++L   +D                    ++K      ++ +    
Sbjct  189  KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPM  248

Query  332  DDRKNELAHLATHGPE--NPKLEMLE--KILQRQFSSSNSPRGIIFTRTRQSAHSLLLWL  387
            +   ++ A L  HG      KL  +E  + L     + +  + +IF ++   A  L   L
Sbjct  249  EIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLL  308

Query  388  QQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDI  447
             +                       + M+Q ++    + F++G   +LVAT +   G+DI
Sbjct  309  VECNFPSI--------------CIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDI  354

Query  448  PHCNVVVRYGLLTNEISMVQARGRARA-DQSVYAFVATEGSRELKRELINEALETLMEQA  506
               N+V+ Y +  +  + +   GRA        A      + +   E++N+  E      
Sbjct  355  ERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASD--SEVLNQVQERFEVDI  412

Query  507  VAAVQKMDQAEY  518
                +++D + Y
Sbjct  413  KELPEQIDTSTY  424


 Score = 45.2 bits (105),  Expect = 0.002, Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 48/131 (37%), Gaps = 8/131 (6%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE  65
            Q E I  A+ G ++I    +G GKT        + +E   G    +VL +   L  Q   
Sbjct  73   QHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICN  132

Query  66   EFRRMLD--GRWTVTTLSGDMGPRAGFGHLARCH-DLLICTAELLQMALTSPEEEEHVEL  122
            EF R         V+   G +  +     L      +++ T   +     +   E+ + L
Sbjct  133  EFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVL----ALAREKDLSL  188

Query  123  TVFSLIVVDEC  133
                  ++DEC
Sbjct  189  KNVRHFILDEC  199


>sp|Q56XG6|RH15_ARATH DEAD-box ATP-dependent RNA helicase 15 OS=Arabidopsis 
thaliana OX=3702 GN=RH15 PE=1 SV=3
Length=427

 Score = 100 bits (248),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 39/252 (15%), Positives = 90/252 (36%), Gaps = 35/252 (14%)

Query  286  RYNDALLIHDTVRAVDALAALQD--------------FYHREHVTKTQILCAERRLLALF  331
            +     ++ +  + +++L   +D                    ++K      ++ +    
Sbjct  189  KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPM  248

Query  332  DDRKNELAHLATHGPE--NPKLEMLE--KILQRQFSSSNSPRGIIFTRTRQSAHSLLLWL  387
            +   ++ A L  HG      KL  +E  + L     + +  + +IF ++   A  L   L
Sbjct  249  EIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLL  308

Query  388  QQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDI  447
             +                       + M+Q ++    + F++G   +LVAT +   G+DI
Sbjct  309  VECNFPSI--------------CIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDI  354

Query  448  PHCNVVVRYGLLTNEISMVQARGRARA-DQSVYAFVATEGSRELKRELINEALETLMEQA  506
               N+V+ Y +  +  + +   GRA        A      + +   E++N+  E      
Sbjct  355  ERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASD--SEVLNQVQERFEVDI  412

Query  507  VAAVQKMDQAEY  518
                +++D + Y
Sbjct  413  KELPEQIDTSTY  424


 Score = 45.2 bits (105),  Expect = 0.002, Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 48/131 (37%), Gaps = 8/131 (6%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE  65
            Q E I  A+ G ++I    +G GKT        + +E   G    +VL +   L  Q   
Sbjct  73   QHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICN  132

Query  66   EFRRMLD--GRWTVTTLSGDMGPRAGFGHLARCH-DLLICTAELLQMALTSPEEEEHVEL  122
            EF R         V+   G +  +     L      +++ T   +     +   E+ + L
Sbjct  133  EFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVL----ALAREKDLSL  188

Query  123  TVFSLIVVDEC  133
                  ++DEC
Sbjct  189  KNVRHFILDEC  199


>sp|Q4WIN6|DBP5_ASPFU ATP-dependent RNA helicase dbp5 OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 
/ Af293) OX=330879 GN=dbp5 PE=3 SV=2
Length=489

 Score = 101 bits (250),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 69/195 (35%), Gaps = 29/195 (15%)

Query  352  EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ  411
            E   + L + +        IIF +TR +A  +   +  +              G    S 
Sbjct  306  EDKYRTLVQLYGLLTVGSSIIFVQTRAAAQEIERRMTAE--------------GHTVVSL  351

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT-----------  460
            +       +  +I +F+ G   +L+AT+V   G+D+   ++V+ Y +             
Sbjct  352  TGERDPSVRDAIIDQFRRGEAKVLIATNVLARGIDVSTVSMVINYDIPELHQPNVPGRQA  411

Query  461  NEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQ  519
            +  + +   GR  R  +   +        E   E++N+ ++T     +  V   D  E +
Sbjct  412  DFQTYLHRIGRTGRFGRVGVSISFVSNREE--WEMLNQ-IQTYFNCEIQRVDTKDWDEVE  468

Query  520  AKIRDLQQAALTKRA  534
              I+   + +     
Sbjct  469  DIIKKTIKNSRANPK  483


>sp|A5DZX2|DBP5_LODEL ATP-dependent RNA helicase DBP5 OS=Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=DBP5 PE=3 SV=1
Length=511

 Score = 101 bits (251),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 65/176 (37%), Gaps = 26/176 (15%)

Query  352  EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ  411
            E   ++L   +        IIF   + +A SL L ++++              G   S  
Sbjct  339  EHKFEVLCELYGLLTIGSSIIFVEQKATADSLYLRMKEE--------------GHTVSIL  384

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT------NEISM  465
               +   D+  +I  F++G   +L+ T+V   G+DI   ++VV Y L        +  + 
Sbjct  385  HGGLEVADRDRLIDDFREGRSKVLITTNVLARGIDIATVSMVVNYDLPRTKEGRPDPSTY  444

Query  466  VQARGRA---RADQSVYAFVATEGSRELKRELINEA-LETLMEQAVAAVQKMDQAE  517
            +   GR           +FVA E   +  + +     +E  M   V      D+ E
Sbjct  445  LHRIGRTGRFGRVGVSVSFVANEKDYQTLKYIAEYFGIEDQM--TVVPTDDWDEVE  498


>sp|Q5A9Z6|FAL1_CANAL ATP-dependent RNA helicase FAL1 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=FAL1 
PE=3 SV=1
Length=399

 Score = 99.9 bits (247),  Expect = 4e-21, Method: Composition-based stats.
 Identities = 28/157 (18%), Positives = 63/157 (40%), Gaps = 20/157 (13%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K + L  +    + +    + +IF  T+   + L   +++Q      +     + G    
Sbjct  252  KFDTLCDL----YDNLTITQAVIFCNTKLKVNWLADQMKKQ------NFTVVAMHG----  297

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 M Q ++  ++  F+ G   +L++T V   G+D+   ++V+ Y L T++ + +   
Sbjct  298  ----DMKQDERDSIMNDFRRGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENYIHRI  353

Query  470  GR-ARADQSVYAF-VATEGSRELKRELINEALETLME  504
            GR  R  +   A  + T+      +E        + E
Sbjct  354  GRSGRFGRKGTAINLITKDDVVTLKEFEKYYSTKIKE  390


 Score = 47.5 bits (111),  Expect = 3e-04, Method: Composition-based stats.
 Identities = 20/129 (16%), Positives = 45/129 (35%), Gaps = 6/129 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG-AKVVVLVNRVHLVTQHGE  65
            Q   IM  + G++ I    +G GKT   +      ++T     + ++L     L  Q   
Sbjct  53   QSRAIMQIISGRDTIAQAQSGTGKTATFSIGMLEVIDTKSKECQALILSPTRELAIQIQN  112

Query  66   EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
              + + D     T    G          L +   ++  T   +   +    +  +++   
Sbjct  113  VVKHLGDYMNIHTHACIGGKNVGEDVKKLQQGQQIVSGTPGRVIDVI----KRRNLQTRN  168

Query  125  FSLIVVDEC  133
              ++++DE 
Sbjct  169  IKVLILDEA  177


>sp|A7TGU7|DHH1_VANPO ATP-dependent RNA helicase DHH1 OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=DHH1 PE=3 SV=1
Length=484

 Score = 101 bits (250),  Expect = 4e-21, Method: Composition-based stats.
 Identities = 57/356 (16%), Positives = 116/356 (33%), Gaps = 22/356 (6%)

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
            SP    +  +  A   +L    N       +     P L++   +  K   L    +++ 
Sbjct  58   SPIQEESIPVALAGRDILARAKN---GTGKTAAFVIPTLEKVKSKHNKIQALIMVPTRE-  113

Query  229  FGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN  288
                  +++  +  H  +  +    GT + +  + +L+E   +      RV  L  R+  
Sbjct  114  LALQTSQVVRTLGKHCGISCMVTTGGTNLRDDIL-RLNETVHILVGTPGRVLDLASRKVA  172

Query  289  DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPEN  348
            D  L    +  +D    +     +  + +  +   +     LF                +
Sbjct  173  D--LSECNLFIMDEADKMLSRDFKSIIEQILVFLPKNHQSLLFSATFPLSVKEFMVNHLH  230

Query  349  PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI-----RAQLL  403
               E+    L  + +     +   F   +Q  H L     + Q  Q +       R +LL
Sbjct  231  KPYEI---NLMDELTLKGITQYYAFVEEKQKLHCLNTLFSKLQINQAIIFCNSTNRVELL  287

Query  404  ------IGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG  457
                  +G         M Q+++  V  +F+ G +  LV + +   G+DI   NVV+ + 
Sbjct  288  AKKITDLGYSCYYSHARMKQQERNRVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFD  347

Query  458  LLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQK  512
                  + +   GR  R      A      +       I + L T ++   A + K
Sbjct  348  FPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIQAIPATIDK  403


 Score = 52.1 bits (123),  Expect = 1e-05, Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 48/129 (37%), Gaps = 6/129 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE  65
            Q E I  AL G++I+     G GKT A        +++     + +++V    L  Q  +
Sbjct  61   QEESIPVALAGRDILARAKNGTGKTAAFVIPTLEKVKSKHNKIQALIMVPTRELALQTSQ  120

Query  66   EFRRMLDGRWTVTTL-SGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
              R +         + +G    R     L     +L+ T   +          +  +L+ 
Sbjct  121  VVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLD----LASRKVADLSE  176

Query  125  FSLIVVDEC  133
             +L ++DE 
Sbjct  177  CNLFIMDEA  185


>sp|A3LWX3|DHH1_PICST ATP-dependent RNA helicase DHH1 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=DHH1 PE=3 SV=1
Length=509

 Score = 101 bits (250),  Expect = 4e-21, Method: Composition-based stats.
 Identities = 54/361 (15%), Positives = 113/361 (31%), Gaps = 32/361 (9%)

Query  165  GLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRR  224
            G TAS       ++   +N +  L        ++  +    Q  +  +   K   +  + 
Sbjct  79   GKTASFIIPSLQQIKPKLNKIQAL-------ILVPTRELALQTSQVVRTLGKHLGI--QC  129

Query  225  SQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHL  284
                 G  LK  + +++D + +   +      +  + V  LSE       +  ++ +   
Sbjct  130  MVTTGGTSLKDDILRLNDPVHVLVGTPGRVLDLAARSVADLSECPLFVMDEADKMLSREF  189

Query  285  RRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATH  344
            +   + +L     +   +L     F         + L     +  + +     +      
Sbjct  190  KGIIEQILEF-FPKNRQSLLFSATFPLAVKSFMDKHLNKPYEINLMDELTLRGITQYYAF  248

Query  345  GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI  404
              E  KL      L   FS     + IIF  +      L   + +              +
Sbjct  249  VEEKQKL----HCLNTLFSKLQINQSIIFCNSTNRVELLAKKITE--------------L  290

Query  405  GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
            G         M Q+ + +V  +F+ G +  LV + +   G+DI   NVV+ +       +
Sbjct  291  GYSCYYSHAKMPQQARNKVFHEFRQGKVRNLVCSDLLTRGIDIQAVNVVINFDFPKTAET  350

Query  465  MVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIR  523
             +   GR  R      A      +    R  + +  + L  +       +D+  Y A   
Sbjct  351  YLHRIGRSGRFGHLGLAINLMSWN---DRYSLYKIEQELGTEIKPIPATIDRKLYVADNE  407

Query  524  D  524
            D
Sbjct  408  D  408


 Score = 50.2 bits (118),  Expect = 6e-05, Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 45/130 (35%), Gaps = 8/130 (6%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT--RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHG  64
            Q E I  AL G++++     G GKT         ++    ++  + ++LV    L  Q  
Sbjct  57   QEESIPMALAGRDVLARAKNGTGKTASFI-IPSLQQIKPKLNKIQALILVPTRELALQTS  115

Query  65   EEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELT  123
            +  R +           +G    +     L     +L+ T   +             +L+
Sbjct  116  QVVRTLGKHLGIQCMVTTGGTSLKDDILRLNDPVHVLVGTPGRVLD----LAARSVADLS  171

Query  124  VFSLIVVDEC  133
               L V+DE 
Sbjct  172  ECPLFVMDEA  181


>sp|Q4R8K5|IF4A1_MACFA Eukaryotic initiation factor 4A-I OS=Macaca 
fascicularis OX=9541 GN=EIF4A1 PE=2 SV=1
Length=406

 Score = 99.9 bits (247),  Expect = 4e-21, Method: Composition-based stats.
 Identities = 49/308 (16%), Positives = 109/308 (35%), Gaps = 39/308 (13%)

Query  172  TGGASKLDGAINHVLQLCANLDTWC--IMSPQNCCPQLQEHSQQPCKQY--NLCHR--RS  225
            +G       AI+ + Q+  +L      +++P     Q  +        Y    CH     
Sbjct  78   SGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGG  137

Query  226  QDPFGDLLKKLMDQIHDHLEMP-----ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVY  280
             +   ++ K  M+  H  +  P      L+R++ +  Y +  V       L+   + ++Y
Sbjct  138  TNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIY  197

Query  281  ALHLR-RYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELA  339
             +  +   N  +++       D L   + F         +        +  F        
Sbjct  198  DIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREE  257

Query  340  HLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIR  399
                      KL+ L  +    + +    + +IF  TR+    L       + +   D  
Sbjct  258  W---------KLDTLCDL----YETLTITQAVIFINTRRKVDWLT------EKMHARDFT  298

Query  400  AQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL  459
            A  + G         M Q+++  ++++F+ G+  +L+ T +   G+D+   ++V+ Y L 
Sbjct  299  ASAMHG--------DMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP  350

Query  460  TNEISMVQ  467
            TN  + + 
Sbjct  351  TNRENYIH  358


 Score = 51.7 bits (122),  Expect = 1e-05, Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 64/185 (35%), Gaps = 12/185 (6%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE  65
            Q   I+P ++G ++I    +G GKT   A    + +E    A + +VL     L  Q  +
Sbjct  59   QQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQK  118

Query  66   EFRRMLDGRWTVTTLS-GDMGPRAGFGHL-ARCHDLLICTAELLQMALTSPEEEEHVELT  123
                + D          G    RA    L      +++ T   +   L       ++   
Sbjct  119  VVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRR----YLSPK  174

Query  124  VFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAIN  183
               + V+DE      D + +      +    Q+     QV+ L+A+  +         + 
Sbjct  175  YIKMFVLDEA-----DEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMR  229

Query  184  HVLQL  188
              +++
Sbjct  230  DPIRI  234


>sp|P29562|IF4A1_RABIT Eukaryotic initiation factor 4A-I (Fragment) 
OS=Oryctolagus cuniculus OX=9986 GN=EIF4A1 PE=1 SV=2
Length=398

 Score = 99.5 bits (246),  Expect = 5e-21, Method: Composition-based stats.
 Identities = 48/308 (16%), Positives = 108/308 (35%), Gaps = 39/308 (13%)

Query  172  TGGASKLDGAINHVLQLCANLDTWC--IMSPQNCCPQLQEHSQQPCKQY--NLCHR--RS  225
            +G       AI+ + Q+  +L      +++P     Q  +        Y    CH     
Sbjct  70   SGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGG  129

Query  226  QDPFGDLLKKLMDQIHDHLEMP-----ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVY  280
             +   ++ K  M+  H  +  P      L+R++ +  Y +  V       L+   + ++Y
Sbjct  130  TNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIY  189

Query  281  ALHLR-RYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELA  339
             +  +   N  +++       D L   + F         +        +  F        
Sbjct  190  DIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREE  249

Query  340  HLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIR  399
                      KL+ L  +    + +    + +IF  TR+    L       + +   D  
Sbjct  250  W---------KLDTLCDL----YETLTITQAVIFINTRRKVDWLT------EKMHARDFT  290

Query  400  AQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL  459
               + G         M Q+++  ++++F+ G+  +L+ T +   G+D+   ++V+ Y L 
Sbjct  291  VSAMHG--------DMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP  342

Query  460  TNEISMVQ  467
            TN  + + 
Sbjct  343  TNRENYIH  350


 Score = 51.7 bits (122),  Expect = 1e-05, Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 64/185 (35%), Gaps = 12/185 (6%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE  65
            Q   I+P ++G ++I    +G GKT   A    + +E    A + +VL     L  Q  +
Sbjct  51   QQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQK  110

Query  66   EFRRMLDGRWTVTTLS-GDMGPRAGFGHL-ARCHDLLICTAELLQMALTSPEEEEHVELT  123
                + D          G    RA    L      +++ T   +   L       ++   
Sbjct  111  VVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRR----YLSPK  166

Query  124  VFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAIN  183
               + V+DE      D + +      +    Q+     QV+ L+A+  +         + 
Sbjct  167  YIKMFVLDEA-----DEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMR  221

Query  184  HVLQL  188
              +++
Sbjct  222  DPIRI  226


>sp|Q4WCW2|SUB2_ASPFU ATP-dependent RNA helicase sub2 OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 
/ Af293) OX=330879 GN=sub2 PE=3 SV=1
Length=448

 Score = 100 bits (248),  Expect = 5e-21, Method: Composition-based stats.
 Identities = 43/249 (17%), Positives = 88/249 (35%), Gaps = 23/249 (9%)

Query  265  LSEAAALAGLQEQRVYALHLRRYNDALLIH-DTVRAVDALAALQDFYHREHVTKTQILCA  323
            L E   +     ++    H+RR    +       + V   +A      R    K      
Sbjct  210  LDECDKMLDQIGKQAQIAHMRRDVQEIFRATPADKQVMMFSATLSQEIRPICKKFMRNPL  269

Query  324  ERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSL  383
            E  +        + L        E+ K   L ++L          + IIF ++   A+ L
Sbjct  270  EVYVDDDTKLTLHGLQQYYIKLSESEKNRKLNELLDSL----EFNQVIIFVKSTLRANEL  325

Query  384  LLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEE  443
               L++                    +  + ++Q ++ +  ++F++    + VAT V   
Sbjct  326  DKLLRECNFPSI--------------AVHSGVSQEERIKRYKEFKEFNKRICVATDVFGR  371

Query  444  GLDIPHCNVVVRYGLLTNEISMVQARGRARADQS---VYAFVATEGSRELKRELINEALE  500
            G+DI   N+ + Y L  +  S +   GRA    +     +FV++E   ++ +E I +  E
Sbjct  372  GIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLSISFVSSEEDEKVLKE-IEKRFE  430

Query  501  TLMEQAVAA  509
              + +    
Sbjct  431  VALPEYPEG  439


 Score = 47.9 bits (112),  Expect = 3e-04, Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 47/135 (35%), Gaps = 14/135 (10%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG-AKVVVLVNRVHLVTQ---  62
            Q   I  A+   +++    +G GKT          LE V G   V+V+ +   L  Q   
Sbjct  85   QQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQIKN  144

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHD----LLICTAELLQMALTSPEEEE  118
                F + L    T     G   P      +    +    +++ T   L  AL   ++  
Sbjct  145  EYARFSKYLPDVKTAVFYGG--TPIQKDIEVLSNKESYPNIVVGTPGRL-NALVREKK--  199

Query  119  HVELTVFSLIVVDEC  133
             + L      V+DEC
Sbjct  200  -LSLRNVKAFVLDEC  213


>sp|A5DIP0|DHH1_PICGU ATP-dependent RNA helicase DHH1 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DHH1 PE=3 
SV=1
Length=547

 Score = 101 bits (250),  Expect = 5e-21, Method: Composition-based stats.
 Identities = 55/394 (14%), Positives = 124/394 (31%), Gaps = 36/394 (9%)

Query  165  GLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRR  224
            G TAS       ++   +N +  L        ++  +    Q  +  +   K   L  + 
Sbjct  78   GKTASFIIPALQQVKTKLNKIQVL-------ILVPTRELALQTSQVVKTLGKHLKL--QC  128

Query  225  SQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHL  284
                 G LL+  + ++ + + +   +      +  + +   SE       +  ++ +   
Sbjct  129  MVTTGGTLLRDDVMRLDEPVHILVGTPGRVLDLAARSIADFSECPMFVMDEADKMLSREF  188

Query  285  RRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATH  344
            +   + +L     +   +L     F         + L     +  + +     ++     
Sbjct  189  KGIIEQILEF-FPKNRQSLLFSATFPLAVKSFMDKHLNKPYEINLMDELTLRGISQFYAF  247

Query  345  GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI  404
              E  KL      L   FS     + IIF  +      L   + +              +
Sbjct  248  VEEKQKL----HCLNTLFSKLKINQAIIFCNSTNRVELLAKKITE--------------L  289

Query  405  GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
            G         M Q+ + +V  +F+ G++  LV + +   G+DI   NVV+ +       +
Sbjct  290  GYSCYYSHAKMPQQARNKVFHEFRQGSVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAET  349

Query  465  MVQARGR-ARADQSVYAF-VATEGSRE----LKRELINEA--LETLMEQAVAAVQKMDQA  516
             +   GR  R      A        R+    ++ EL  E   + + +++++   +     
Sbjct  350  YLHRIGRSGRFGHLGLAINFIHWDDRKSLFNIETELGTEIKPIPSDIDRSLYVTEDEASI  409

Query  517  EYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVE  550
                KI +L +     R     +   Q       
Sbjct  410  PRPFKIDELPKGNEHSRKRNGYEYRGQPTSQGFP  443


 Score = 49.4 bits (116),  Expect = 8e-05, Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 46/130 (35%), Gaps = 8/130 (6%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT--RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHG  64
            Q E I  AL G++I+     G GKT         ++    ++  +V++LV    L  Q  
Sbjct  56   QEESIPMALAGRDILARAKNGTGKTASFI-IPALQQVKTKLNKIQVLILVPTRELALQTS  114

Query  65   EEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELT  123
            +  + +    +      +G    R     L     +L+ T   +             + +
Sbjct  115  QVVKTLGKHLKLQCMVTTGGTLLRDDVMRLDEPVHILVGTPGRVLD----LAARSIADFS  170

Query  124  VFSLIVVDEC  133
               + V+DE 
Sbjct  171  ECPMFVMDEA  180


>sp|P20449|DBP5_YEAST ATP-dependent RNA helicase DBP5 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DBP5 
PE=1 SV=2
Length=482

 Score = 100 bits (249),  Expect = 5e-21, Method: Composition-based stats.
 Identities = 44/311 (14%), Positives = 99/311 (32%), Gaps = 33/311 (11%)

Query  189  CANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPE  248
             A+    C+   +    Q  E  Q+  K   +  +       +  K++      + ++  
Sbjct  160  DASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNKQI------NAQVIV  213

Query  249  LSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQD  308
             +      +  +++++L +       +   +            +     +    +     
Sbjct  214  GTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSAT  273

Query  309  FYHREHVTKTQILCAERRL-LALFDDRKNELAHLATHG-PENPKLEMLEKILQRQFSSSN  366
            F         +I+     L L   +   + +  L      E  K      +L   +    
Sbjct  274  FADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKF----DVLTELYGLMT  329

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
                IIF  T+++A+ L   L+ +              G   S     +  +++  +I  
Sbjct  330  IGSSIIFVATKKTANVLYGKLKSE--------------GHEVSILHGDLQTQERDRLIDD  375

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT------NEISMVQARGR-ARADQSVY  479
            F++G   +L+ T+V   G+DIP  ++VV Y L T      +  + +   GR  R  +   
Sbjct  376  FREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGV  435

Query  480  AFVATEGSREL  490
            A          
Sbjct  436  AISFVHDKNSF  446


>sp|A6ZNQ1|DBP5_YEAS7 ATP-dependent RNA helicase DBP5 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=DBP5 PE=3 SV=1
Length=482

 Score = 100 bits (249),  Expect = 5e-21, Method: Composition-based stats.
 Identities = 44/311 (14%), Positives = 99/311 (32%), Gaps = 33/311 (11%)

Query  189  CANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPE  248
             A+    C+   +    Q  E  Q+  K   +  +       +  K++      + ++  
Sbjct  160  DASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNKQI------NAQVIV  213

Query  249  LSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQD  308
             +      +  +++++L +       +   +            +     +    +     
Sbjct  214  GTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSAT  273

Query  309  FYHREHVTKTQILCAERRL-LALFDDRKNELAHLATHG-PENPKLEMLEKILQRQFSSSN  366
            F         +I+     L L   +   + +  L      E  K      +L   +    
Sbjct  274  FADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKF----DVLTELYGLMT  329

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
                IIF  T+++A+ L   L+ +              G   S     +  +++  +I  
Sbjct  330  IGSSIIFVATKKTANVLYGKLKSE--------------GHEVSILHGDLQTQERDRLIDD  375

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT------NEISMVQARGR-ARADQSVY  479
            F++G   +L+ T+V   G+DIP  ++VV Y L T      +  + +   GR  R  +   
Sbjct  376  FREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGV  435

Query  480  AFVATEGSREL  490
            A          
Sbjct  436  AISFVHDKNSF  446


>sp|A2QUY7|DBP5_ASPNC ATP-dependent RNA helicase dbp5 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=dbp5 PE=3 SV=1
Length=482

 Score = 100 bits (249),  Expect = 5e-21, Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 70/193 (36%), Gaps = 29/193 (15%)

Query  352  EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ  411
            E   + L   +        IIF +TR SA  +   +  +              G   +S 
Sbjct  303  EDKYQTLVNLYGLLTVGSSIIFVKTRASAQEIEKRMVAE--------------GHTVASL  348

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT-----------  460
            +  +    +  VI +F+ G   +L+ T+V   G+D+   ++V+ Y +             
Sbjct  349  TGGIEGSQRDAVIDQFRAGHAKVLITTNVLARGIDVSTVSMVINYDIPEIHQPGARQRQA  408

Query  461  NEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQ  519
            +  + +   GR  R  +   +        E   E++N+ ++      +  +   D  E +
Sbjct  409  DFQTYLHRIGRTGRFGRVGVSISFVSNREE--WEMLNQ-IQRYFNTNIQRIDTKDWDEVE  465

Query  520  AKIRDLQQAALTK  532
              I+   +++  +
Sbjct  466  EIIKKTIKSSRAQ  478


>sp|P60843|IF4A1_MOUSE Eukaryotic initiation factor 4A-I OS=Mus 
musculus OX=10090 GN=Eif4a1 PE=1 SV=1
Length=406

 Score = 99.5 bits (246),  Expect = 5e-21, Method: Composition-based stats.
 Identities = 48/308 (16%), Positives = 108/308 (35%), Gaps = 39/308 (13%)

Query  172  TGGASKLDGAINHVLQLCANLDTWC--IMSPQNCCPQLQEHSQQPCKQY--NLCHR--RS  225
            +G       AI+ + Q+  +L      +++P     Q  +        Y    CH     
Sbjct  78   SGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGG  137

Query  226  QDPFGDLLKKLMDQIHDHLEMP-----ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVY  280
             +   ++ K  M+  H  +  P      L+R++ +  Y +  V       L+   + ++Y
Sbjct  138  TNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIY  197

Query  281  ALHLR-RYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELA  339
             +  +   N  +++       D L   + F         +        +  F        
Sbjct  198  DIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREE  257

Query  340  HLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIR  399
                      KL+ L  +    + +    + +IF  TR+    L       + +   D  
Sbjct  258  W---------KLDTLCDL----YETLTITQAVIFINTRRKVDWLT------EKMHARDFT  298

Query  400  AQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL  459
               + G         M Q+++  ++++F+ G+  +L+ T +   G+D+   ++V+ Y L 
Sbjct  299  VSAMHG--------DMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP  350

Query  460  TNEISMVQ  467
            TN  + + 
Sbjct  351  TNRENYIH  358


 Score = 51.7 bits (122),  Expect = 1e-05, Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 64/185 (35%), Gaps = 12/185 (6%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE  65
            Q   I+P ++G ++I    +G GKT   A    + +E    A + +VL     L  Q  +
Sbjct  59   QQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQK  118

Query  66   EFRRMLDGRWTVTTLS-GDMGPRAGFGHL-ARCHDLLICTAELLQMALTSPEEEEHVELT  123
                + D          G    RA    L      +++ T   +   L       ++   
Sbjct  119  VVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRR----YLSPK  174

Query  124  VFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAIN  183
               + V+DE      D + +      +    Q+     QV+ L+A+  +         + 
Sbjct  175  YIKMFVLDEA-----DEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMR  229

Query  184  HVLQL  188
              +++
Sbjct  230  DPIRI  234


>sp|P60842|IF4A1_HUMAN Eukaryotic initiation factor 4A-I OS=Homo 
sapiens OX=9606 GN=EIF4A1 PE=1 SV=1
Length=406

 Score = 99.5 bits (246),  Expect = 5e-21, Method: Composition-based stats.
 Identities = 48/308 (16%), Positives = 108/308 (35%), Gaps = 39/308 (13%)

Query  172  TGGASKLDGAINHVLQLCANLDTWC--IMSPQNCCPQLQEHSQQPCKQY--NLCHR--RS  225
            +G       AI+ + Q+  +L      +++P     Q  +        Y    CH     
Sbjct  78   SGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGG  137

Query  226  QDPFGDLLKKLMDQIHDHLEMP-----ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVY  280
             +   ++ K  M+  H  +  P      L+R++ +  Y +  V       L+   + ++Y
Sbjct  138  TNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIY  197

Query  281  ALHLR-RYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELA  339
             +  +   N  +++       D L   + F         +        +  F        
Sbjct  198  DIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREE  257

Query  340  HLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIR  399
                      KL+ L  +    + +    + +IF  TR+    L       + +   D  
Sbjct  258  W---------KLDTLCDL----YETLTITQAVIFINTRRKVDWLT------EKMHARDFT  298

Query  400  AQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL  459
               + G         M Q+++  ++++F+ G+  +L+ T +   G+D+   ++V+ Y L 
Sbjct  299  VSAMHG--------DMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP  350

Query  460  TNEISMVQ  467
            TN  + + 
Sbjct  351  TNRENYIH  358


 Score = 51.7 bits (122),  Expect = 1e-05, Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 64/185 (35%), Gaps = 12/185 (6%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE  65
            Q   I+P ++G ++I    +G GKT   A    + +E    A + +VL     L  Q  +
Sbjct  59   QQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQK  118

Query  66   EFRRMLDGRWTVTTLS-GDMGPRAGFGHL-ARCHDLLICTAELLQMALTSPEEEEHVELT  123
                + D          G    RA    L      +++ T   +   L       ++   
Sbjct  119  VVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRR----YLSPK  174

Query  124  VFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAIN  183
               + V+DE      D + +      +    Q+     QV+ L+A+  +         + 
Sbjct  175  YIKMFVLDEA-----DEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMR  229

Query  184  HVLQL  188
              +++
Sbjct  230  DPIRI  234


>sp|Q3SZ54|IF4A1_BOVIN Eukaryotic initiation factor 4A-I OS=Bos 
taurus OX=9913 GN=EIF4A1 PE=2 SV=1
Length=406

 Score = 99.5 bits (246),  Expect = 5e-21, Method: Composition-based stats.
 Identities = 48/308 (16%), Positives = 108/308 (35%), Gaps = 39/308 (13%)

Query  172  TGGASKLDGAINHVLQLCANLDTWC--IMSPQNCCPQLQEHSQQPCKQY--NLCHR--RS  225
            +G       AI+ + Q+  +L      +++P     Q  +        Y    CH     
Sbjct  78   SGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGG  137

Query  226  QDPFGDLLKKLMDQIHDHLEMP-----ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVY  280
             +   ++ K  M+  H  +  P      L+R++ +  Y +  V       L+   + ++Y
Sbjct  138  TNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIY  197

Query  281  ALHLR-RYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELA  339
             +  +   N  +++       D L   + F         +        +  F        
Sbjct  198  DIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREE  257

Query  340  HLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIR  399
                      KL+ L  +    + +    + +IF  TR+    L       + +   D  
Sbjct  258  W---------KLDTLCDL----YETLTITQAVIFINTRRKVDWLT------EKMHARDFT  298

Query  400  AQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL  459
               + G         M Q+++  ++++F+ G+  +L+ T +   G+D+   ++V+ Y L 
Sbjct  299  VSAMHG--------DMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP  350

Query  460  TNEISMVQ  467
            TN  + + 
Sbjct  351  TNRENYIH  358


 Score = 51.7 bits (122),  Expect = 1e-05, Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 64/185 (35%), Gaps = 12/185 (6%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE  65
            Q   I+P ++G ++I    +G GKT   A    + +E    A + +VL     L  Q  +
Sbjct  59   QQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQK  118

Query  66   EFRRMLDGRWTVTTLS-GDMGPRAGFGHL-ARCHDLLICTAELLQMALTSPEEEEHVELT  123
                + D          G    RA    L      +++ T   +   L       ++   
Sbjct  119  VVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRR----YLSPK  174

Query  124  VFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAIN  183
               + V+DE      D + +      +    Q+     QV+ L+A+  +         + 
Sbjct  175  YIKMFVLDEA-----DEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMR  229

Query  184  HVLQL  188
              +++
Sbjct  230  DPIRI  234


>sp|Q54TF8|DDX19_DICDI ATP-dependent RNA helicase ddx19 OS=Dictyostelium 
discoideum OX=44689 GN=helC PE=2 SV=1
Length=465

 Score = 100 bits (248),  Expect = 6e-21, Method: Composition-based stats.
 Identities = 30/145 (21%), Positives = 58/145 (40%), Gaps = 20/145 (14%)

Query  357  ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT  416
            IL   +   +  + I+F  T  +A S+       Q +        LL G         +T
Sbjct  297  ILSDIYGFISVGQSIVFVHTIATAKSV------HQKMVDEGHSVSLLYG-------KDLT  343

Query  417  QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL------TNEISMVQARG  470
              ++ + I+ F+DG   +L+ T+V   G+DIP  ++V+ Y +        + +  +   G
Sbjct  344  TEERFKQIKDFKDGKSKVLITTNVLARGIDIPQVSLVINYDVPLDEMGKPDPVHYLHRIG  403

Query  471  R-ARADQSVYAFVATEGSRELKREL  494
            R  R  +S  A       +   + +
Sbjct  404  RVGRFGRSGVALSFVYDQQSTNKLM  428


 Score = 44.4 bits (103),  Expect = 0.003, Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 44/120 (37%), Gaps = 15/120 (13%)

Query  18   KNIIIWLPTGAGKTRAAAYVAKRHLE-TVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWT  76
             N+I    +G GKT A        ++ +++  + + +     L  Q  E   ++      
Sbjct  109  NNLIAQSQSGTGKTAAFTLGMLNCVDPSINAPQAICISPTKELALQTFEVISKIGQFSNI  168

Query  77   VTTLSGDMGPRAGFGHLARC--HDLLICTA-ELLQMALTSPEEEEHVELTVFSLIVVDEC  133
               L            + +   + ++I T  ++L+  +      + +++     +V+DE 
Sbjct  169  KPLLY------ISEIEVPKNVTNQVIIGTPGKILENVIKKQLSVKFLKM-----VVLDEA  217


>sp|A5A6N4|IF4A1_PANTR Eukaryotic initiation factor 4A-I OS=Pan 
troglodytes OX=9598 GN=EIF4A1 PE=2 SV=1
Length=406

 Score = 99.5 bits (246),  Expect = 6e-21, Method: Composition-based stats.
 Identities = 48/308 (16%), Positives = 108/308 (35%), Gaps = 39/308 (13%)

Query  172  TGGASKLDGAINHVLQLCANLDTWC--IMSPQNCCPQLQEHSQQPCKQY--NLCHR--RS  225
            +G       AI+ + Q+  +L      +++P     Q  +        Y    CH     
Sbjct  78   SGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGG  137

Query  226  QDPFGDLLKKLMDQIHDHLEMP-----ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVY  280
             +   ++ K  M+  H  +  P      L+R++ +  Y +  V       L+   + ++Y
Sbjct  138  TNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIY  197

Query  281  ALHLR-RYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELA  339
             +  +   N  +++       D L   + F         +        +  F        
Sbjct  198  DIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREE  257

Query  340  HLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIR  399
                      KL+ L  +    + +    + +IF  TR+    L       + +   D  
Sbjct  258  W---------KLDTLCDL----YETLTITQAVIFINTRRKVDWLT------EKMHARDFT  298

Query  400  AQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL  459
               + G         M Q+++  ++++F+ G+  +L+ T +   G+D+   ++V+ Y L 
Sbjct  299  VSAMHG--------DMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP  350

Query  460  TNEISMVQ  467
            TN  + + 
Sbjct  351  TNRENYIH  358


 Score = 51.7 bits (122),  Expect = 1e-05, Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 64/185 (35%), Gaps = 12/185 (6%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE  65
            Q   I+P ++G ++I    +G GKT   A    + +E    A + +VL     L  Q  +
Sbjct  59   QQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQK  118

Query  66   EFRRMLDGRWTVTTLS-GDMGPRAGFGHL-ARCHDLLICTAELLQMALTSPEEEEHVELT  123
                + D          G    RA    L      +++ T   +   L       ++   
Sbjct  119  VVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRR----YLSPK  174

Query  124  VFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAIN  183
               + V+DE      D + +      +    Q+     QV+ L+A+  +         + 
Sbjct  175  YIKMFVLDEA-----DEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMR  229

Query  184  HVLQL  188
              +++
Sbjct  230  DPIRI  234


>sp|Q5R5F5|IF4A1_PONAB Eukaryotic initiation factor 4A-I OS=Pongo 
abelii OX=9601 GN=EIF4A1 PE=2 SV=1
Length=406

 Score = 99.5 bits (246),  Expect = 6e-21, Method: Composition-based stats.
 Identities = 48/308 (16%), Positives = 108/308 (35%), Gaps = 39/308 (13%)

Query  172  TGGASKLDGAINHVLQLCANLDTWC--IMSPQNCCPQLQEHSQQPCKQY--NLCHR--RS  225
            +G       AI+ + Q+  +L      +++P     Q  +        Y    CH     
Sbjct  78   SGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGG  137

Query  226  QDPFGDLLKKLMDQIHDHLEMP-----ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVY  280
             +   ++ K  M+  H  +  P      L+R++ +  Y +  V       L+   + ++Y
Sbjct  138  TNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIY  197

Query  281  ALHLR-RYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELA  339
             +  +   N  +++       D L   + F         +        +  F        
Sbjct  198  DIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREE  257

Query  340  HLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIR  399
                      KL+ L  +    + +    + +IF  TR+    L       + +   D  
Sbjct  258  W---------KLDTLCDL----YETLTITQAVIFINTRRKVDWLT------EKMHARDFT  298

Query  400  AQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL  459
               + G         M Q+++  ++++F+ G+  +L+ T +   G+D+   ++V+ Y L 
Sbjct  299  VSAMHG--------DMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP  350

Query  460  TNEISMVQ  467
            TN  + + 
Sbjct  351  TNRENYIH  358


 Score = 51.3 bits (121),  Expect = 2e-05, Method: Composition-based stats.
 Identities = 31/185 (17%), Positives = 63/185 (34%), Gaps = 12/185 (6%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE  65
            Q   I+  ++G ++I    +G GKT   A    + +E    A + +VL     L  Q  +
Sbjct  59   QQRAILSCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQK  118

Query  66   EFRRMLDGRWTVTTLS-GDMGPRAGFGHL-ARCHDLLICTAELLQMALTSPEEEEHVELT  123
                + D          G    RA    L      +++ T   +   L       ++   
Sbjct  119  VVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRR----YLSPK  174

Query  124  VFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAIN  183
               + V+DE      D + +      +    Q+     QV+ L+A+  +         + 
Sbjct  175  YIKMFVLDEA-----DEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMR  229

Query  184  HVLQL  188
              +++
Sbjct  230  DPIRI  234


>sp|Q6FKN8|DBP5_CANGA ATP-dependent RNA helicase DBP5 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DBP5 PE=3 SV=1
Length=504

 Score = 100 bits (248),  Expect = 7e-21, Method: Composition-based stats.
 Identities = 53/346 (15%), Positives = 112/346 (32%), Gaps = 33/346 (10%)

Query  181  AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI  240
             ++ V +        C+   +    Q  E  Q+  K   +  +       +   K+   +
Sbjct  174  MLSRVDETQNVPQAICLAPSRELARQTLEVIQEMGKYTKITTQLIVPDSFEKNTKINANV  233

Query  241  H--DHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVR  298
                   + +L R+   Q+   ++  L EA  +   Q      + ++++   L     + 
Sbjct  234  VVGTPGTLLDLIRRKLIQLQNVKIFVLDEADNMLDKQGLGDQCIRVKKF---LPKDTQLV  290

Query  299  AVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKIL  358
               A  A     + + V         +R     +     +  L     +        ++L
Sbjct  291  LFSATFADAVKAYAQKVIPNANTLELQRN----EVNVKAIKQLYMDCND---EAHKYEVL  343

Query  359  QRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQR  418
               +        IIF   + +A+ L   L+ +              G   S   + +   
Sbjct  344  CELYGLLTIGSSIIFVAKKDTANLLYGKLKHE--------------GHQVSILHSDLRTD  389

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT------NEISMVQARGR-  471
            ++  +I  F++G   +L+ T+V   G+DIP  ++VV Y L T      +  + V   GR 
Sbjct  390  ERDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVVNYDLPTLPNGMPDYATYVHRIGRT  449

Query  472  ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAE  517
             R  ++  A       +  K     +     +E         D+ E
Sbjct  450  GRFGRTGVAISFVHDKKSFKILSAIQDYFKDIELTRVPTDDWDEVE  495


>sp|Q54Y81|DDX23_DICDI ATP-dependent RNA helicase ddx23 OS=Dictyostelium 
discoideum OX=44689 GN=helB2 PE=2 SV=1
Length=834

 Score = 101 bits (251),  Expect = 7e-21, Method: Composition-based stats.
 Identities = 28/150 (19%), Positives = 57/150 (38%), Gaps = 20/150 (13%)

Query  347  ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA  406
            EN K E L ++++        P  IIF   ++    +   L++ +               
Sbjct  665  ENDKKEHLTQLIK----DGPPPPIIIFVNKKKHCDIIAPVLEECR--------------V  706

Query  407  GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV  466
              +   +  +Q  ++  ++ F+     +L+AT VA  G+ +     V+ + +  N     
Sbjct  707  SYTILHSGRSQEQREAALEGFKKRKYEVLIATGVASRGIHVDGVTHVINFDIPKNIEDYT  766

Query  467  QARGR-ARADQSVYA-FVATEGSRELKREL  494
               GR  RA  +  A    T+   E+  +L
Sbjct  767  HRIGRTGRAGSAGLASSFITDKDVEIMYDL  796


 Score = 57.1 bits (136),  Expect = 5e-07, Method: Composition-based stats.
 Identities = 31/137 (23%), Positives = 55/137 (40%), Gaps = 14/137 (10%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVD---------GAKVVVLVNRV  57
            Q + I  +L G++I+    TG+GKT A       ++             G   +V+    
Sbjct  440  QMQSIPISLTGRDILGIAETGSGKTCAFVIPMLIYISKQPRLTKDTEADGPYALVMAPTR  499

Query  58   HLVTQHGEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE  116
             LV Q  +E R       + V +L G          +++  +++I T   L   L    E
Sbjct  500  ELVQQIEKETRNFAQHFGFRVVSLVGGQSIEDQAYQVSKGCEIIIATPGRLNDCL----E  555

Query  117  EEHVELTVFSLIVVDEC  133
            + ++ L   + IV+DE 
Sbjct  556  KRYLVLNQCNYIVLDEA  572


>sp|Q9UHL0|DDX25_HUMAN ATP-dependent RNA helicase DDX25 OS=Homo 
sapiens OX=9606 GN=DDX25 PE=1 SV=2
Length=483

 Score = 99.9 bits (247),  Expect = 7e-21, Method: Composition-based stats.
 Identities = 36/181 (20%), Positives = 73/181 (40%), Gaps = 30/181 (17%)

Query  347  ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA  406
            E+ K +   + L   + S    + IIF +TR++A  L + + Q               G 
Sbjct  320  EHRKDKY--QALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQD--------------GH  363

Query  407  GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL------T  460
              S  S  +T   +  +IQ+F+DG   +L+ T+V   G+D+    +VV + L        
Sbjct  364  QVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEP  423

Query  461  NEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQ  519
            +  + +   GR  R  +   AF   E            +L  + +   +++++++  +  
Sbjct  424  DYETYLHRIGRTGRFGKKGLAFNMIEVDEL-------PSLMKIQDHFNSSIKQLNAEDMD  476

Query  520  A  520
             
Sbjct  477  E  477


 Score = 48.6 bits (114),  Expect = 1e-04, Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 41/119 (34%), Gaps = 9/119 (8%)

Query  18   KNIIIWLPTGAGKTRAAAYVAK---RHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGR  74
            +N+I    +G GKT A           LE     + + L     L  Q G    +M    
Sbjct  137  QNLIAQSQSGTGKTAAFVLAMLSRVNALELFP--QCLCLAPTYELALQTGRVVEQMGKFC  194

Query  75   WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC  133
              V  +    G R   G       ++I T   +        + + ++LT   + V+DE 
Sbjct  195  VDVQVMYAIRGNRIPRGTDI-TKQIIIGTPGTVLD---WCFKLKLIDLTKIRVFVLDEA  249


>sp|Q8RXK6|RH8_ARATH DEAD-box ATP-dependent RNA helicase 8 OS=Arabidopsis 
thaliana OX=3702 GN=RH8 PE=2 SV=1
Length=505

 Score = 100 bits (248),  Expect = 7e-21, Method: Composition-based stats.
 Identities = 48/329 (15%), Positives = 104/329 (32%), Gaps = 24/329 (7%)

Query  182  INHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIH  241
            +  + Q    +    I+  +    Q  +  ++  K   +  +      G  LK  + +++
Sbjct  190  LEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLKI--QVMVTTGGTSLKDDIMRLY  247

Query  242  DHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIH-DTVRAV  300
              + +   +      + ++ V  L + + L   +  ++ +   +   + L+      R +
Sbjct  248  QPVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQI  307

Query  301  DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQR  360
               +A      ++   K + L     +  + +     +        E  K+      L  
Sbjct  308  LMFSATFPVTVKDF--KDRFLTNPYVINLMDELTLKGITQFYAFVEERQKI----HCLNT  361

Query  361  QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ  420
             FS     + IIF  +      L   + +              +G         M Q  +
Sbjct  362  LFSKLQINQSIIFCNSVNRVELLAKKITE--------------LGYSCFYIHAKMLQDHR  407

Query  421  QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVY  479
              V   F++G    LV T +   G+DI   NVV+ +    N  + +   GR  R      
Sbjct  408  NRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGL  467

Query  480  AFVATEGSRELKRELINEALETLMEQAVA  508
            A              I + L T ++Q   
Sbjct  468  AVNLITYEDRFNLYRIEQELGTEIKQIPP  496


 Score = 52.5 bits (124),  Expect = 1e-05, Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 54/131 (41%), Gaps = 10/131 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAY---VAKRHLETVDGAKVVVLVNRVHLVTQH  63
            Q E I  AL G++I+     G GKT  AA+   V ++  +  +  + V++V    L  Q 
Sbjct  158  QEESIPIALTGRDILARAKNGTGKT--AAFCIPVLEKIDQDNNVIQAVIIVPTRELALQT  215

Query  64   GEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
             +  + +    +  V   +G    +     L +   LL+ T   +        ++    L
Sbjct  216  SQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILD----LTKKGVCVL  271

Query  123  TVFSLIVVDEC  133
               S++V+DE 
Sbjct  272  KDCSVLVMDEA  282


>sp|A1CYG5|DBP5_NEOFI ATP-dependent RNA helicase dbp5 OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / 
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dbp5 
PE=3 SV=1
Length=489

 Score = 99.9 bits (247),  Expect = 8e-21, Method: Composition-based stats.
 Identities = 33/195 (17%), Positives = 69/195 (35%), Gaps = 29/195 (15%)

Query  352  EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ  411
            E   K L + +        IIF +TR +A  +   +  +              G    S 
Sbjct  306  EDKYKTLVQLYGLLTVGSSIIFVQTRAAAQEIEKRMTAE--------------GHTVVSL  351

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT-----------  460
            +       +  +I +F+ G   +L+AT+V   G+D+   ++V+ Y +             
Sbjct  352  TGERDPSVRDAIIDQFRRGEAKVLIATNVLARGIDVSTVSMVINYDIPELHQPSVPGRQA  411

Query  461  NEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQ  519
            +  + +   GR  R  +   +        E   E++N+ ++T     +  V   D  E +
Sbjct  412  DFQTYLHRIGRTGRFGRVGVSISFVSNREE--WEMLNQ-IQTYFNCEIQRVDTKDWDEVE  468

Query  520  AKIRDLQQAALTKRA  534
              I+   + +     
Sbjct  469  DIIKKTIKNSRANPK  483


>sp|Q5AJD0|DBP5_CANAL ATP-dependent RNA helicase DBP5 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DBP5 
PE=3 SV=2
Length=540

 Score = 100 bits (248),  Expect = 8e-21, Method: Composition-based stats.
 Identities = 41/240 (17%), Positives = 80/240 (33%), Gaps = 34/240 (14%)

Query  294  HDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG--------  345
               +R   AL              T++     RL+   +  + +   L   G        
Sbjct  310  DQAIRVKKALPRGVQLVLFSATFPTEVREYAERLVPDANSLELKQEELNVDGIKQLYMDC  369

Query  346  -PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI  404
              E  K E+L ++    +        IIF   +++A  L   ++++              
Sbjct  370  RSEQHKFEVLCEL----YGLLTIGSSIIFVEKKETADVLYGKMKKE--------------  411

Query  405  GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT----  460
            G   S     +   D+  +I  F++G   +L+ T+V   G+DI   ++VV Y + T    
Sbjct  412  GHTVSVLHGGLDNTDRDRLIDDFREGRSKVLITTNVLARGIDIASVSMVVNYDMPTDKYG  471

Query  461  --NEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAE  517
              +  + +   GR  R  +   +       R     +  +A    +E         D+ E
Sbjct  472  KPDPSTYLHRIGRTGRFGRVGVSISFIHDRRSYDILMAIKAYFGNVEMTRVPTDDWDEVE  531


>sp|A4R715|DHH1_PYRO7 ATP-dependent RNA helicase DHH1 OS=Pyricularia 
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 
GN=DHH1 PE=3 SV=2
Length=535

 Score = 100 bits (248),  Expect = 8e-21, Method: Composition-based stats.
 Identities = 44/254 (17%), Positives = 82/254 (32%), Gaps = 22/254 (9%)

Query  230  GDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND  289
            G  L+  + ++ D + +   +      +  + V  LSE       +  ++ ++      +
Sbjct  152  GTTLRDDILRLQDPVHIVVGTPGRILDLAGKNVADLSECPMFIMDEADKLLSIEFTPVIE  211

Query  290  ALL-IHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPEN  348
             LL  H   R V   +A      +E   K      E  +  + +     +        E 
Sbjct  212  QLLQFHPKDRQVMLFSATFPISVKEFSDKNMTNPYE--INLMDELTLRGITQYYAFVEEK  269

Query  349  PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN  408
             K+      L   FS     + IIF  +      L   + +              +G   
Sbjct  270  QKV----HCLNTLFSKLQINQSIIFCNSTNRVELLAKKITE--------------LGYSC  311

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
                  M Q+ +  V   F++G    LV + +   G+DI   NVV+ +    N  + +  
Sbjct  312  FYSHAKMQQQARNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHR  371

Query  469  RGR-ARADQSVYAF  481
             GR  R      A 
Sbjct  372  IGRSGRYGHLGLAI  385


 Score = 49.8 bits (117),  Expect = 6e-05, Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 46/129 (36%), Gaps = 6/129 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE  65
            Q E I  AL G++I+     G GKT A    A   +       + ++LV    L  Q  +
Sbjct  74   QEESIPVALTGRDILARAKNGTGKTAAFVVPALETINPKVSKIQCLILVPTRELAMQTSQ  133

Query  66   EFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
              + +       V   +G    R     L     +++ T   +         +   +L+ 
Sbjct  134  VCKTLGKHLGINVMVTTGGTTLRDDILRLQDPVHIVVGTPGRILD----LAGKNVADLSE  189

Query  125  FSLIVVDEC  133
              + ++DE 
Sbjct  190  CPMFIMDEA  198


>sp|Q0CBE1|DHH1_ASPTN ATP-dependent RNA helicase dhh1 OS=Aspergillus 
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=dhh1 
PE=3 SV=1
Length=509

 Score = 99.9 bits (247),  Expect = 8e-21, Method: Composition-based stats.
 Identities = 51/326 (16%), Positives = 94/326 (29%), Gaps = 30/326 (9%)

Query  234  KKLMDQI---HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDA  290
              LMD I   +D + +   +      +  + V  LSE       +  ++ +       + 
Sbjct  153  TGLMDDIIRLNDAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQ  212

Query  291  LL-IHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENP  349
            LL  H   R V   +A      +    K + +     +  + +     +        E  
Sbjct  213  LLSFHPKDRQVMLFSATFPLIVKSF--KDKHMRNPYEINLMDELTLRGITQYYAFVEEKQ  270

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+      L   FS     + IIF  +      L   + +              +G    
Sbjct  271  KV----HCLNTLFSKLQINQSIIFCNSTNRVELLAKKITE--------------LGYSCF  312

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 M Q+ +  V   F++G    LV + +   G+DI   NVV+ +    N  + +   
Sbjct  313  YSHARMLQQHRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRI  372

Query  470  GR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM-----DQAEYQAKIR  523
            GR  R      A              I + L T ++     + K              I 
Sbjct  373  GRSGRFGHLGLAINLINWDDRFNLYKIEQELGTEIQPIPQNIDKKLYVYDSPDTIPRPIS  432

Query  524  DLQQAALTKRAAQAAQRENQRQQFPV  549
            +  Q              ++R     
Sbjct  433  NPSQPPQATGMPSGQHIGDRRHNNHP  458


 Score = 51.0 bits (120),  Expect = 3e-05, Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 46/131 (35%), Gaps = 10/131 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA---KVVVLVNRVHLVTQH  63
            Q E I  AL G++I+     G GKT  AA+V          +   + ++LV    L  Q 
Sbjct  74   QEETIPVALTGRDILARAKNGTGKT--AAFVIPTLERINPKSTKTQALILVPTRELALQT  131

Query  64   GEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
                + +       V   +G  G       L     +L+ T   +         +   +L
Sbjct  132  SHVCKTLGKHLGINVMVTTGGTGLMDDIIRLNDAVHILVGTPGRVLD----LASKGVADL  187

Query  123  TVFSLIVVDEC  133
            +     V+DE 
Sbjct  188  SECPTFVMDEA  198


>sp|Q6BML1|PRP5_DEBHA Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 
767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 
GN=PRP5 PE=3 SV=2
Length=913

 Score = 101 bits (251),  Expect = 9e-21, Method: Composition-based stats.
 Identities = 70/448 (16%), Positives = 142/448 (32%), Gaps = 84/448 (19%)

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQP-CKQYNLCHRRSQD  227
            SP +  A  +  AI     +     T    +     P L+    QP  K+ +        
Sbjct  339  SPSSIQAQAI-PAIMSGRDIIGVAKTGSGKTLSFVLPLLRHIQDQPPLKKGDGPIGLIMT  397

Query  228  PFGDLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEAAALAGLQEQRVYAL---  282
            P  +L  ++  +++   +   +S    FG    E Q+ +L + A +      R+  L   
Sbjct  398  PTRELALQIHKELNHFTKKLNISSCCCFGGSSIESQIAELKKGAQIIVGTPGRIIDLLAA  457

Query  283  -----HLRRYNDALLIHDTVRAVD-------------------ALAALQDFYHREHVTKT  318
                    +    L++ +  R  D                    +     F  +  +   
Sbjct  458  NSGRVTNLQRVTYLVLDEADRMFDMGFEPQVTKVFTRVRPDRQTVLFSATFPRKMELLAK  517

Query  319  QILCAERRLLAL--------FDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRG  370
            +IL     ++             +     +      E  K   L   L          + 
Sbjct  518  KILDNPMEIVVGGISVVASEITQKVELFENEDDKSLEEAKFSKLLSTLNDYGDKDAECKI  577

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            +IF   + +A  LL+ L  ++                  +      Q D++  I++F   
Sbjct  578  LIFVEKQIAADELLVKLLTEKYPCL--------------AIHGGKDQIDRKHAIREFSSS  623

Query  431  T--LNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGS  487
               +N+L+ATS+A  GLD+   N+V+ Y   ++    V   GR  RA +   A       
Sbjct  624  NSGVNILIATSIAARGLDVKGLNLVINYEAASHMEDYVHRVGRTGRAGRKGTAITFVSSK  683

Query  488  R--------------ELKRELINEALETLMEQAVAAVQKMDQ--------------AEYQ  519
            +              ++  + IN  L  +  + +  V+   +               E +
Sbjct  684  QGRAITDLVKAMRLSKVSEDEINPRLIEISTKFLEGVKSGKEKYNFGFSGKGLDNLQEIR  743

Query  520  AKIRDLQQAALTKRAAQAAQRENQRQQF  547
               RDL++    +    +  + N+++Q 
Sbjct  744  ESNRDLERKVYGEENDSSTFKANEKKQN  771


 Score = 59.0 bits (141),  Expect = 1e-07, Method: Composition-based stats.
 Identities = 43/262 (16%), Positives = 86/262 (33%), Gaps = 23/262 (9%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKV------VVLVNRVHLV  60
            Q + I   + G++II    TG+GKT +      RH++     K       +++     L 
Sbjct  344  QAQAIPAIMSGRDIIGVAKTGSGKTLSFVLPLLRHIQDQPPLKKGDGPIGLIMTPTRELA  403

Query  61   TQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
             Q  +E          +     G     +    L +   +++ T   +   L +      
Sbjct  404  LQIHKELNHFTKKLNISSCCCFGGSSIESQIAELKKGAQIIVGTPGRIIDLLAANSGR-V  462

Query  120  VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQ-----PLPQVLGLTA------  168
              L   + +V+DE            +   +  ++  R         P+ + L A      
Sbjct  463  TNLQRVTYLVLDEADRMFDMGFEPQVTKVFTRVRPDRQTVLFSATFPRKMELLAKKILDN  522

Query  169  --SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQ--NCCPQLQEHSQQPCKQYNLCHRR  224
                  GG S +   I   ++L  N D   +   +       L ++  +  +   L    
Sbjct  523  PMEIVVGGISVVASEITQKVELFENEDDKSLEEAKFSKLLSTLNDYGDKDAECKILIFVE  582

Query  225  SQDPFGDLLKKLMDQIHDHLEM  246
             Q    +LL KL+ + +  L +
Sbjct  583  KQIAADELLVKLLTEKYPCLAI  604


>sp|Q1EB85|DBP5_COCIM ATP-dependent RNA helicase DBP5 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=DBP5 PE=3 SV=1
Length=495

 Score = 99.9 bits (247),  Expect = 9e-21, Method: Composition-based stats.
 Identities = 31/175 (18%), Positives = 65/175 (37%), Gaps = 29/175 (17%)

Query  352  EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ  411
            E   +IL + +        IIF +TR SA  +   +  +              G    S 
Sbjct  319  EHKYEILVKFYGLLTIGSSIIFVKTRASAAEIERRMVAE--------------GHTVVSL  364

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT-----------  460
            +  +  + + E+I +F++GT  +L+ T+V   G+D+   ++V+ Y +             
Sbjct  365  TGGIEGQKRDEIIDRFRNGTAKVLITTNVLARGIDVSTVSMVINYDIPELHLPGAARRMA  424

Query  461  NEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMD  514
            +  + +   GR  R  +   A        E +   + + ++      +  V   D
Sbjct  425  DAQTYLHRIGRTGRFGRVGVAVSFVSNQEEWQ---MLQDIQKYFSTNIERVDTRD  476


 Score = 45.9 bits (107),  Expect = 0.001, Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 39/122 (32%), Gaps = 16/122 (13%)

Query  19   NIIIWLPTGAGKTRAAAYVAKRHLETVDGA----KVVVLVNRVHLVTQHGEEFR---RML  71
            N+I    +G GKT A        LE         + +VL     L  Q     +     +
Sbjct  133  NMIAQSQSGTGKTAAFVLNILSRLELTPEKQKSPQALVLAPSRELARQIVGVIQAMGTFV  192

Query  72   DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVD  131
            +G +  T +  +M              +++ T   +Q  +               ++V+D
Sbjct  193  EGLFVATAVPMEMNRNQRVEA-----SIVVGTPGTVQDLIKKRLFNT----QHLRVLVLD  243

Query  132  EC  133
            E 
Sbjct  244  EA  245


>sp|Q9VCU9|DCR1_DROME Endoribonuclease Dcr-1 OS=Drosophila melanogaster 
OX=7227 GN=Dcr-1 PE=1 SV=1
Length=2249

 Score = 101 bits (252),  Expect = 9e-21, Method: Composition-based stats.
 Identities = 35/126 (28%), Positives = 60/126 (48%), Gaps = 6/126 (5%)

Query  370  GIIFTRTRQSAHSLLLWLQQ--QQGLQTVDIRAQLLIGA----GNSSQSTHMTQRDQQEV  423
             +I+     +A  L   L +  ++      +R Q             +   +  R Q+EV
Sbjct  495  ALIYCNQNHTARVLFELLAEISRRDPDLKFLRCQYTTDRVADPTTEPKEAELEHRRQEEV  554

Query  424  IQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFVA  483
            +++F+    N+L+ TSV EEG+D+P CN+VVR+   T   S VQ +GRARA  + +  + 
Sbjct  555  LKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPTTYRSYVQCKGRARAAPAYHVILV  614

Query  484  TEGSRE  489
                + 
Sbjct  615  APSYKS  620


 Score = 76.8 bits (187),  Expect = 5e-13, Method: Composition-based stats.
 Identities = 69/401 (17%), Positives = 127/401 (32%), Gaps = 62/401 (15%)

Query  1    MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLET-VDGAKVVVLVNRVHL  59
               R +Q E++  A E +N II L   + K   A  + +          +V      V+L
Sbjct  15   FTPRDFQVELLATAYE-RNTIICLGHRSSKEFIALKLLQELSRRARRHGRV-----SVYL  68

Query  60   VTQHGEEFRRMLDGRWTVTTLSGDMGPRAG---------FGHLARCHDLLICTAELLQMA  110
                  E     +     T L+     R           F H    + + I   E     
Sbjct  69   ----SCEVGTSTEPCSIYTMLTHLTDLRVWQEQPDMQIPFDHCWTDYHVSILRPEGFLYL  124

Query  111  LTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQY-LELKLQRAQPLPQVLGLTAS  169
            L + E    + L+   LIV+++CH +    VY  I   +   +        P++LGL A 
Sbjct  125  LETRE----LLLSSVELIVLEDCHDSA---VYQRIRPLFENHIMPAPPADRPRILGL-AG  176

Query  170  PGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPF  229
            P      +L      +  L  ++   C +   +    +  +  +P +    C     D  
Sbjct  177  PLHSAGCELQQLSAMLATLEQSV--LCQIETASDIVTVLRYCSRPHEYIVQCAPFEMDEL  234

Query  230  GDLLKK--------LMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAAL----------  271
              +L          L+D  +D  E+   + +F  ++ +    K+     +          
Sbjct  235  SLVLADVLNTHKSFLLDHRYDPYEI-YGTDQFMDELKDIPDPKVDPLNVINSLLVVLHEM  293

Query  272  AGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAER--RLLA  329
                 QR  A H  + N+ L     V+       L        + +   LC     R L 
Sbjct  294  GPWCTQRA-AHHFYQCNEKL----KVKTPHERHYLLYCLVSTALIQLYSLCEHAFHRHLG  348

Query  330  LFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRG  370
               D +  +   +     +PK+  L + L+         + 
Sbjct  349  SGSDSRQTIERYS-----SPKVRRLLQTLRCFKPEEVHTQA  384


>sp|Q10MH8|RH24_ORYSJ DEAD-box ATP-dependent RNA helicase 24 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os03g0308500 PE=2 
SV=1
Length=770

 Score = 101 bits (250),  Expect = 9e-21, Method: Composition-based stats.
 Identities = 45/266 (17%), Positives = 93/266 (35%), Gaps = 19/266 (7%)

Query  237  MDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDT  296
              ++    E+   +      + + + +K+  A  L   +  R++ L       +++    
Sbjct  336  FKELKAGCEIVIATPGRLIDLLKMKALKMFRATYLVLDEADRMFDLGFEPQIRSIVGQIR  395

Query  297  VRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEK  356
                  L +    Y  E + +  +    R  +        ++  +    P +   E +  
Sbjct  396  PDRQTLLFSATMPYKVERLAREILTDPIRVTVGQVGSANEDIKQVVNVLPSD--AEKMPW  453

Query  357  ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT  416
            +L++     +    ++F   +     +   L Q+        R   L G           
Sbjct  454  LLEKLPGMIDDGDVLVFAAKKARVDEIESQLNQR------GFRIAALHG--------DKD  499

Query  417  QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARAD  475
            Q  + E +QKF+ G  ++LVAT VA  GLDI     VV + +       +   GR  RA 
Sbjct  500  QASRMETLQKFKSGVYHVLVATDVAARGLDIKSIKTVVNFDIAKEMDMHIHRIGRTGRAG  559

Query  476  QS-VYAF-VATEGSRELKRELINEAL  499
                 A+ + T+       EL++  +
Sbjct  560  DKDGTAYTLITQKEVRFAGELVHCLI  585


 Score = 52.5 bits (124),  Expect = 1e-05, Method: Composition-based stats.
 Identities = 31/136 (23%), Positives = 50/136 (37%), Gaps = 11/136 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRH------LETVDGAKVVVLVNRVHLV  60
            Q + +   L G++II    TG+GKT A       H      LE  +G   VV      L 
Sbjct  246  QCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELEKEEGPIGVVCAPTRELA  305

Query  61   TQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
             Q   E ++        V  + G +     F  L    +++I T   L   L        
Sbjct  306  HQIYLEAKKFAKPYNLRVAAVYGGVSKFDQFKELKAGCEIVIATPGRLIDLLKMKA----  361

Query  120  VELTVFSLIVVDECHH  135
            +++   + +V+DE   
Sbjct  362  LKMFRATYLVLDEADR  377


>sp|A6QUM7|DBP10_AJECN ATP-dependent RNA helicase DBP10 OS=Ajellomyces 
capsulatus (strain NAm1 / WU24) OX=2059318 GN=DBP10 
PE=3 SV=1
Length=900

 Score = 101 bits (250),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 64/180 (36%), Gaps = 15/180 (8%)

Query  309  FYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSP  368
            F  +    +  +L     ++ +       L         + K +  E        S    
Sbjct  306  FTVKSSEKEGALLHVLHEVIKIPTGETEALKRAKEEVKHSKKRKRSEVTSNSHKESPTEH  365

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
              IIFT T+     L   L+                G   S     + Q  ++  +Q F+
Sbjct  366  STIIFTATKHHVDYLTSILRTS--------------GFAVSYAYGSLDQTARKIEVQNFR  411

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGS  487
            DG  ++LV T VA  G+DIP  + V+ Y   +     V   GR ARA ++ +++     S
Sbjct  412  DGITHILVVTDVAARGIDIPILSNVINYDFPSQPKIFVHRVGRTARAGKTGWSYSLIRES  471


 Score = 50.6 bits (119),  Expect = 5e-05, Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 49/125 (39%), Gaps = 8/125 (6%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVD---GAKVVVLVNRVHLVTQHGEEFRRML  71
            L+ ++++    TG+GKT A        L++     G++ ++L     L  Q  +  + + 
Sbjct  121  LDDQDVVGMARTGSGKTAAFVIPMIEKLKSHSAKFGSRALILSPSRELALQTLKVVKELG  180

Query  72   DG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV  130
             G       L G       F ++A   D++I T           + E  ++L+    +V 
Sbjct  181  RGTDLKSVLLVGGDSLEEQFEYMASNPDIIIATPGRFLH----LKVEMSLDLSSIRYVVF  236

Query  131  DECHH  135
            DE   
Sbjct  237  DEADR  241


>sp|Q6C024|PRP28_YARLI Pre-mRNA-splicing ATP-dependent RNA helicase 
PRP28 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) 
OX=284591 GN=PRP28 PE=3 SV=1
Length=575

 Score = 100 bits (248),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 34/174 (20%), Positives = 67/174 (39%), Gaps = 24/174 (14%)

Query  352  EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ  411
            +   ++L         P  ++F   ++   ++   L           R  ++ G      
Sbjct  416  KRKRRLLDIISKRQYRPPIVVFLNYKRDCEAVSDAL------VAAGWRTAIIHG------  463

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR--  469
                 Q  +++ +Q  + G +++LVAT VA  GLDIP+ ++VV + +  N  S       
Sbjct  464  --GKQQEQREQAVQHLKRGAVDVLVATDVAGRGLDIPNVSLVVNFQMANNIESYTHRIGR  521

Query  470  -GRARADQSVYAFVATEGS-------RELKRELINEALETLMEQAVAAVQKMDQ  515
             GRA    +   F+  E         + + R   +   + L     A ++K+ Q
Sbjct  522  TGRAGKRGTAVTFLGQEDDDVLFELKQMISRSEASPNNQELSRHPAARMKKLQQ  575


 Score = 51.7 bits (122),  Expect = 2e-05, Method: Composition-based stats.
 Identities = 26/140 (19%), Positives = 50/140 (36%), Gaps = 16/140 (11%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYV-----AKRHLETVDGAKV-----VVLVNR  56
            Q   I  AL  +++I    TG+GKT A+  +          +  + +KV     ++L   
Sbjct  190  QRAAIPIALGIRDVIGVAETGSGKT-ASFLIPLISYICELPKLDERSKVNGPYGLILAPT  248

Query  57   VHLVTQ-HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE  115
              L  Q   E  +      + V ++ G    +     +    +L++ T   L   +    
Sbjct  249  RELAMQIKDEAVKFCAPLGFKVVSVVGGYSAQEQALAVQEGAELIVATPGRLLDVIDRRL  308

Query  116  EEEHVELTVFSLIVVDECHH  135
                + L     +V+DE   
Sbjct  309  ----LVLNQCCYVVMDEADR  324


>sp|P54475|CSHB_BACSU DEAD-box ATP-dependent RNA helicase CshB 
OS=Bacillus subtilis (strain 168) OX=224308 GN=cshB PE=1 SV=1
Length=438

 Score = 99.1 bits (245),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 56/381 (15%), Positives = 130/381 (34%), Gaps = 28/381 (7%)

Query  128  IVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQ  187
             ++D  H          I  + +   L++      V+G + +      + L   +N +  
Sbjct  14   FIIDAVHRLGFYEP-TDIQKRLIPAVLKKES----VIGQSQTGTGKTHAYLLPLLNKIDP  68

Query  188  LCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFG-DLLKKLMDQIHDHLEM  246
                +        +    Q+ + + +  +       RS+   G    +K +D++     +
Sbjct  69   AKDVVQVVITAPTRELANQIYQEALKITQGEEGSQIRSKCFIGGTDKQKSIDKLKIQPHL  128

Query  247  PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAAL  306
               +      + ++Q + + +A +L   +   +  +      D +           + + 
Sbjct  129  VVGTPGRIADLIKEQALSVHKAESLVIDEADLMLDMGFLADVDYIGSRMPEDLQMLVFSA  188

Query  307  QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSN  366
                  +   K  +   +   +        ++ H+        K ++L  I+       N
Sbjct  189  TIPEKLKPFLKKYMENPKYAHVEPKQVTAAKIEHILIPSKHRDKDKLLFDIMSHL----N  244

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
               GI+F  T+ +A  +  +L  +              G         +T R++++V+++
Sbjct  245  PYLGIVFANTKNTADHIAQYLTGK--------------GMKIGLLHGGLTPRERKKVMKQ  290

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFV---  482
              D     ++AT +A  G+DI   + V+ Y L  +    V   GR ARA  S  A     
Sbjct  291  INDLEFTYIIATDLAARGIDIKGVSHVINYELPDDLDFYVHRVGRTARAGSSGQAMTIYE  350

Query  483  ATEGSRELKRELINEALETLM  503
             T+    ++ E +    E L 
Sbjct  351  LTDEDALVRLEKMGIEFEYLE  371


 Score = 51.7 bits (122),  Expect = 2e-05, Method: Composition-based stats.
 Identities = 27/137 (20%), Positives = 47/137 (34%), Gaps = 9/137 (7%)

Query  2    ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLET-VDGAKVVVLVNRVHLV  60
            E    Q  +I   L+ +++I    TG GKT A        ++   D  +VV+      L 
Sbjct  26   EPTDIQKRLIPAVLKKESVIGQSQTGTGKTHAYLLPLLNKIDPAKDVVQVVITAPTRELA  85

Query  61   TQHGEEFRRMLDGRWTVTTLS----GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE  116
             Q  +E  ++  G       S    G    +     L     L++ T   +   +     
Sbjct  86   NQIYQEALKITQGEEGSQIRSKCFIGGTDKQKSIDKLKIQPHLVVGTPGRIADLIKEQAL  145

Query  117  EEHVELTVFSLIVVDEC  133
              H   +    +V+DE 
Sbjct  146  SVHKAES----LVIDEA  158


>sp|Q2U5A2|DHH1_ASPOR ATP-dependent RNA helicase dhh1 OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=dhh1 
PE=3 SV=1
Length=511

 Score = 99.9 bits (247),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 55/327 (17%), Positives = 97/327 (30%), Gaps = 34/327 (10%)

Query  234  KKLMDQI---HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDA  290
              LMD I   +D + +   +      +  + V  LSE       +  ++ +       + 
Sbjct  153  TGLMDDIIRLNDAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQ  212

Query  291  LL-IHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENP  349
            LL  H   R V   +A      +    K + +     +  + +     +        E  
Sbjct  213  LLSFHPKDRQVMLFSATFPLIVKSF--KDKHMRNPYEINLMDELTLRGITQYYAFVEEKQ  270

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+      L   FS     + IIF  +      L   + +              +G    
Sbjct  271  KV----HCLNTLFSKLQINQSIIFCNSTNRVELLAKKITE--------------LGYSCF  312

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 M Q+ +  V   F++G    LV + +   G+DI   NVV+ +    N  + +   
Sbjct  313  YSHARMLQQHRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRI  372

Query  470  GR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM-----DQAEYQAKIR  523
            GR  R      A              I + L T ++     + K              I 
Sbjct  373  GRSGRFGHLGLAINLINWDDRFNLYKIEQELGTEIQPIPQNIDKKLYVYESPETIPRPIA  432

Query  524  DLQQAALTKRAAQAA----QRENQRQQ  546
            +  QA L     Q      +R N    
Sbjct  433  NASQAQLATSGNQTQNMGERRHNNHSN  459


 Score = 50.2 bits (118),  Expect = 4e-05, Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 46/131 (35%), Gaps = 10/131 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA---KVVVLVNRVHLVTQH  63
            Q E I  AL G++I+     G GKT  AA+V          +   + ++LV    L  Q 
Sbjct  74   QEETIPVALTGRDILARAKNGTGKT--AAFVIPTLERINPKSTKTQALILVPTRELALQT  131

Query  64   GEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
                + +       V   +G  G       L     +L+ T   +         +   +L
Sbjct  132  SHVCKTLGKHLGINVMVTTGGTGLMDDIIRLNDAVHILVGTPGRVLD----LASKGVADL  187

Query  123  TVFSLIVVDEC  133
            +     V+DE 
Sbjct  188  SECPTFVMDEA  198


>sp|Q7S5D9|DHH1_NEUCR ATP-dependent RNA helicase dhh1 OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / 
DSM 1257 / FGSC 987) OX=367110 GN=drh-10 PE=3 SV=3
Length=569

 Score = 99.9 bits (247),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 50/286 (17%), Positives = 87/286 (30%), Gaps = 26/286 (9%)

Query  229  FGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN  288
              D + +L D +H  +  P            +QV  LSE       +  ++ +       
Sbjct  153  LRDDIVRLQDPVHIVVGTPGRILDLAG----KQVADLSECPMFIMDEADKLLSQEFTPVI  208

Query  289  DALL-IHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPE  347
            + LL  H   R V   +A      ++   K      E  +  + +     +        E
Sbjct  209  EQLLQFHPKDRQVMLFSATFPLSVKDFSDKNMTSPYE--INLMDELTLRGITQYYAFVEE  266

Query  348  NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG  407
              K+      L   FS     + IIF  +      L   + +              +G  
Sbjct  267  KQKV----HCLNTLFSKLQINQSIIFCNSTNRVELLAKKITE--------------LGYS  308

Query  408  NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
                   M Q+ +  V   F++G    LV + +   G+DI   NVV+ +    N  + + 
Sbjct  309  CFYSHAKMAQQARNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLH  368

Query  468  ARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQK  512
              GR  R      A              I   L T ++     + K
Sbjct  369  RIGRSGRYGHLGLAINLINWDDRFNLYNIERDLGTEIQPIPQTIDK  414


 Score = 54.4 bits (129),  Expect = 2e-06, Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 52/131 (40%), Gaps = 10/131 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG-AKV--VVLVNRVHLVTQH  63
            Q E I  AL G++I+     G GKT  AA+V     +     +K+  ++LV    L  Q 
Sbjct  72   QEEAIPVALTGRDILARAKNGTGKT--AAFVIPALNKINPKVSKIQCLILVPTRELAMQT  129

Query  64   GEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
             +  + +       V   +G  G R     L     +++ T   +         ++  +L
Sbjct  130  SQVCKTLGKHLGINVMVTTGGTGLRDDIVRLQDPVHIVVGTPGRILD----LAGKQVADL  185

Query  123  TVFSLIVVDEC  133
            +   + ++DE 
Sbjct  186  SECPMFIMDEA  196


>sp|Q0CGJ9|SUB2_ASPTN ATP-dependent RNA helicase sub2 OS=Aspergillus 
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=sub2 
PE=3 SV=1
Length=438

 Score = 99.1 bits (245),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 50/335 (15%), Positives = 112/335 (33%), Gaps = 51/335 (15%)

Query  200  PQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYE  259
            P  C   +  H+++   Q    + R      D+   +        +  E+      + Y 
Sbjct  121  PGECSVLVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDIEVLSN--KESYP  178

Query  260  QQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQD-----------  308
              VV          L           R   A ++ +  + +D +   +D           
Sbjct  179  NIVV-----GTPGRLNALVREKKLSLRNVKAFVLDECDKMLDQIDMRRDVQEIFRATPAD  233

Query  309  ---FYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG--------PENPKLEMLEKI  357
                     +++      ++ +    +   ++   L  HG         E+ K   L  +
Sbjct  234  KQVMMFSATLSQEIRPICKKFMRNPLEVYVDDDTKLTLHGLQQYYIKLSESEKNRKLNDL  293

Query  358  LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ  417
            L          + IIF ++ Q A+ L   L++                    +  + ++Q
Sbjct  294  LDNL----EFNQVIIFVKSTQRANELDKLLRECNFPSI--------------AVHSGVSQ  335

Query  418  RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQS  477
             ++ +  ++F++    + VAT V   G+DI   N+ + Y L  +  S +   GRA    +
Sbjct  336  EERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGT  395

Query  478  ---VYAFVATEGSRELKRELINEALETLMEQAVAA  509
                 +FV++E   ++ ++ I +  E  + +    
Sbjct  396  KGLSISFVSSEDDEKVLKD-IEKRFEVALPEYPEG  429


 Score = 47.5 bits (111),  Expect = 3e-04, Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 45/128 (35%), Gaps = 14/128 (11%)

Query  14   ALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG-AKVVVLVNRVHLVTQ---HGEEFRR  69
            A+   +++    +G GKT          LE V G   V+V+ +   L  Q       F +
Sbjct  89   AILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQIKNEYARFSK  148

Query  70   MLDGRWTVTTLSGDMGPRAGFGHLARCHD----LLICTAELLQMALTSPEEEEHVELTVF  125
             L    T     G   P      +    +    +++ T   L  AL   ++   + L   
Sbjct  149  YLPDVKTAVFYGG--TPIQKDIEVLSNKESYPNIVVGTPGRL-NALVREKK---LSLRNV  202

Query  126  SLIVVDEC  133
               V+DEC
Sbjct  203  KAFVLDEC  210


>sp|Q4IPI1|ROK1_GIBZE ATP-dependent RNA helicase ROK1 OS=Gibberella 
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / 
NRRL 31084 / PH-1) OX=229533 GN=ROK1 PE=3 SV=1
Length=693

 Score = 100 bits (249),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 86/223 (39%), Gaps = 29/223 (13%)

Query  347  ENPKLEMLEKILQRQFSSSNSPRG----IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL  402
            E  KL  L ++L    S  + P      ++FT+T   A +L   LQ    L+        
Sbjct  448  EQGKLLALRQLLHPTASDDSGPPLRPPFLVFTQTIDRATALHEELQYDIPLEAGG-----  502

Query  403  LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE  462
               A  ++  + +T   +  +++KF+ G + +L+ T V   G+D    N VV Y +  + 
Sbjct  503  --AARIAALHSGLTDSARSSIMRKFRAGDIWILITTDVLARGVDFAGVNGVVNYDVPGSS  560

Query  463  ISMVQARGR----ARADQSVYAFVATEG--------------SRELKRELINEALETLME  504
               V   GR     R       F   E                ++  +      ++  + 
Sbjct  561  AGYVHRAGRTGRAGREGGIAVTFYTKEDIPFVKMVANVIAVSEKQAGKTGDEAGVQKWLL  620

Query  505  QAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQF  547
             A+  V+K D+ + + +  + +++ +  + +  +  E +R+  
Sbjct  621  DALPNVRKADRKKLKERGNEARRSGVKSKISSKSGYERRRENN  663


 Score = 44.4 bits (103),  Expect = 0.004, Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 49/169 (29%), Gaps = 48/169 (28%)

Query  12   MPALEGKNII-------IWLPTGAGKTRAAAYV--AKRHLETVDGA--------KVVVLV  54
              AL+ ++ +          PTG+GKT  +  +      L              + V++ 
Sbjct  197  QAALKDEDGLDGGVDFLAIAPTGSGKT-ISFLIPAINNILRRRSEENTGNIHELEAVIVA  255

Query  55   NRVHLVTQHGEEFRRMLDGR-------WTVTTLSGDMGPRAGFGHLARCH----------  97
                LV Q   E +++  G           T LS D    A                   
Sbjct  256  PTRELVHQIVSEGQKLCKGTGLKVVSMKKHTHLSADQVDMAEDSSEDEEDKESESEDDDK  315

Query  98   -------------DLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC  133
                         D+L+ T  LL   LTS        L     +++DE 
Sbjct  316  KPSDDKPKQITTPDILVTTPFLLFKFLTSGPPSTQKVLPTVRDLILDEA  364


>sp|A5DIX5|ROK1_PICGU ATP-dependent RNA helicase ROK1 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=ROK1 PE=3 
SV=2
Length=537

 Score = 99.9 bits (247),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 40/227 (18%), Positives = 78/227 (34%), Gaps = 36/227 (16%)

Query  339  AHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI  398
              L   G E  KL  + +++Q+       P  IIF ++   A +L               
Sbjct  327  QKLVFTGNEEGKLLAIRQMVQQ---GEFKPPIIIFLQSIPRAKAL--------------F  369

Query  399  RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL  458
               +             T + ++E I++F++G   +L+ T V   G+D    N+V+ Y +
Sbjct  370  HELIYDKLNVEVIHAERTPKQREEAIRRFKNGDAWVLITTDVLARGVDFKGVNLVINYDV  429

Query  459  LTNEISMVQARGRARADQS--VYAFVATEGSRELKRELIN---------------EALET  501
                 + V   GR              T+  +   + ++N               E++E 
Sbjct  430  PQTSQAYVHRIGRTGRGGKEGKAVTFFTKEDKLAIKPVLNVMKQSGCHEGYSEWMESMEK  489

Query  502  LMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFP  548
            L ++     Q       + KI  + Q    KR  +    E  +++  
Sbjct  490  LTKK--EKQQIKQHEIKRKKISTVPQVVSKKRKQRKEMIEASKRRKE  534


 Score = 60.6 bits (145),  Expect = 3e-08, Method: Composition-based stats.
 Identities = 38/134 (28%), Positives = 56/134 (42%), Gaps = 11/134 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKV-----VVLVNRVHLVT  61
            Q E I  + EG+++I   PTG+GKT A      + L +    K      VV+     L  
Sbjct  133  QCEAIPASAEGRDLIACAPTGSGKTLAYLIPMAQALISSPKTKNYGIRGVVIAPTNELAI  192

Query  62   QHGEEFRRMLDGRW-TVTTLSGDMG-PRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
            Q  +    M  G    VT LS  +    +     A   D+LICT   L        ++E 
Sbjct  193  QIYQTLAPMCRGSNLNVTLLSKQVASKISSSIISANKFDVLICTPLRLID----LVKKEQ  248

Query  120  VELTVFSLIVVDEC  133
            V+L+    +V+DE 
Sbjct  249  VDLSKVEHLVIDEA  262


>sp|Q6H7S2|RH8_ORYSJ DEAD-box ATP-dependent RNA helicase 8 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os02g0641800 PE=2 SV=2
Length=508

 Score = 99.5 bits (246),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 52/374 (14%), Positives = 116/374 (31%), Gaps = 34/374 (9%)

Query  147  SQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG--------AINHVLQLCANLDTWCIM  198
              +      + + +P  + LT S     A    G        A+  + Q    +    ++
Sbjct  152  KGFERPSPIQEESIP--IALTGSDILARAKNGTGKTAAFCIPALEKIDQEKNAIQVVILV  209

Query  199  SPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMY  258
              +    Q  +  ++  K   +  +      G  LK  + +++  + +   +      + 
Sbjct  210  PTRELALQTSQVCKELGKHLKI--QVMVTTGGTSLKDDIIRLYQPVHLLVGTPGRILDLT  267

Query  259  EQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIH-DTVRAVDALAALQDFYHREHVTK  317
            ++ +  L + + L   +  ++ +   +   + L+ +    R +   +A      +E   K
Sbjct  268  KKGICILKDCSMLIMDEADKLLSPEFQPSVEQLIRYLPASRQILMFSATFPVTVKEF--K  325

Query  318  TQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTR  377
             + L     +  + +     +        E  K+      L   FS     + IIF  + 
Sbjct  326  DKYLPKPYVINLMDELTLKGITQFYAFVEERQKV----HCLNTLFSKLQINQSIIFCNSV  381

Query  378  QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA  437
                 L   + +              +G         M Q  +  V   F++G    LV 
Sbjct  382  NRVELLAKKITE--------------LGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC  427

Query  438  TSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELIN  496
            T +   G+DI   NVV+ +       + +   GR  R      A              I 
Sbjct  428  TDLFTRGIDIQAVNVVINFDFPKTAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIE  487

Query  497  EALETLMEQAVAAV  510
            + L T ++     +
Sbjct  488  QELGTEIKPIPPQI  501


 Score = 55.6 bits (132),  Expect = 9e-07, Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 50/131 (38%), Gaps = 10/131 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA---KVVVLVNRVHLVTQH  63
            Q E I  AL G +I+     G GKT  AA+      +        +VV+LV    L  Q 
Sbjct  161  QEESIPIALTGSDILARAKNGTGKT--AAFCIPALEKIDQEKNAIQVVILVPTRELALQT  218

Query  64   GEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
             +  + +    +  V   +G    +     L +   LL+ T   +        ++    L
Sbjct  219  SQVCKELGKHLKIQVMVTTGGTSLKDDIIRLYQPVHLLVGTPGRILD----LTKKGICIL  274

Query  123  TVFSLIVVDEC  133
               S++++DE 
Sbjct  275  KDCSMLIMDEA  285


>sp|Q7RZH4|MAK5_NEUCR ATP-dependent RNA helicase mak-5 OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / 
DSM 1257 / FGSC 987) OX=367110 GN=mak-5 PE=3 SV=1
Length=805

 Score = 100 bits (249),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 50/129 (39%), Gaps = 23/129 (18%)

Query  365  SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI  424
              + R ++FT +  S   L   L+                        + M Q+ +   I
Sbjct  518  QPTRRALVFTNSVNSVRRLTPLLENLNLPAFP--------------LHSGMIQQARLRSI  563

Query  425  QKFQ--------DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARAD  475
             +F+        +G+  +LVAT VA  GLDIP  ++V+ Y +       V   GR ARA 
Sbjct  564  DRFKANEGAKKKNGSAAILVATDVAARGLDIPDVDLVIHYHVPRAAEDYVHRSGRTARAS  623

Query  476  QSVYAFVAT  484
             S  + +  
Sbjct  624  NSGTSILLC  632


 Score = 49.8 bits (117),  Expect = 7e-05, Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 58/147 (39%), Gaps = 16/147 (11%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-----------AAYVAKRHLETVDGAKVVVLVN  55
            Q + I   + G ++I    TG+GKT A           AA   K++ E   GA  ++L  
Sbjct  236  QSKAIPEIMAGHDVIGKASTGSGKTLAFGIPVIESWLSAAETRKQNKEERKGATALILSP  295

Query  56   RVHLVTQ---HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALT  112
               L  Q   H +   + L     + ++ G M  +       +  D++I T   +   ++
Sbjct  296  TRELAQQIRDHLQALCKGLPTAPYICSVLGGMAVQKQ-KRQLQVADIVIATPGRMWEVMS  354

Query  113  SPEEEEHVELTVFSLIVVDECHHTHKD  139
            S +      L   S +V+DE     KD
Sbjct  355  S-DNSVLASLRNISFLVLDEADRLLKD  380


>sp|Q09719|DBP10_SCHPO ATP-dependent RNA helicase dbp10 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=dbp10 
PE=1 SV=1
Length=848

 Score = 100 bits (249),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 39/180 (22%), Positives = 61/180 (34%), Gaps = 16/180 (9%)

Query  309  FYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSP  368
            F  +    +  +LC  + ++ L          +        +   LE  L+   S S   
Sbjct  289  FSVKTAEREAALLCILQDIIKLPLKDNVRPREIGNVNNPKKRKRALELALKGSESGSPDS  348

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
              ++F  T+     +   L Q               G   S     + Q  +   I  F+
Sbjct  349  -TLVFVPTKHHVEYVSELLVQA--------------GYSVSKIYGSLDQEARLNEINNFR  393

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGS  487
             G  NLLV T VA  G+DIP    V+ Y         V   GR ARA ++ +A+      
Sbjct  394  LGKTNLLVVTDVASRGIDIPLLANVINYDFPPQPKVFVHRVGRTARAGRTGWAYSLVRAE  453


 Score = 51.7 bits (122),  Expect = 2e-05, Method: Composition-based stats.
 Identities = 26/125 (21%), Positives = 48/125 (38%), Gaps = 8/125 (6%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRHLETV---DGAKVVVLVNRVHLVTQHGEEFRRML  71
            LEG++++    TG+GKT A       HL++       + ++L     L  Q  +  +   
Sbjct  104  LEGRDVVGMARTGSGKTAAFVIPMIEHLKSTLANSNTRALILSPNRELALQTVKVVKDFS  163

Query  72   DG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV  130
             G       + G +     F  L+   D+++ T           + E  +EL+    +V 
Sbjct  164  KGTDLRSVAIVGGVSLEEQFSLLSGKPDIVVATPGRFLH----LKVEMKLELSSIEYVVF  219

Query  131  DECHH  135
            DE   
Sbjct  220  DEADR  224


>sp|A4RBS3|SUB2_PYRO7 ATP-dependent RNA helicase SUB2 OS=Pyricularia 
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 
GN=SUB2 PE=3 SV=1
Length=436

 Score = 98.7 bits (244),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 55/340 (16%), Positives = 110/340 (32%), Gaps = 43/340 (13%)

Query  202  NCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQ  261
             C   +  H+++   Q    + R      D+   +        +  EL +   T  +   
Sbjct  120  ECSVLVMCHTRELAFQIRNEYNRFSKYMPDIKTGVFFGGTPIQKDAELLKNKETHPHIIV  179

Query  262  V--VKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDF-----YHREH  314
                +L+       L+   V    L   +  L   D  R V  +                
Sbjct  180  GTPGRLNALVRDKFLRLSSVRIFVLDECDKMLDQIDMRRDVQEIFRATPQQKQVMMFSAT  239

Query  315  VTKTQILCAERRLLALFDDRKNELAHLATHG--------PENPKLEMLEKILQRQFSSSN  366
            ++       ++ +    +   +E   L  HG         E  K   L ++L        
Sbjct  240  LSDEIKPICKKFMQNPTEHYVDEDTKLTLHGLQQYFVALEEKEKNRKLNELLDDL----Q  295

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
              + IIF ++   A  L   L++                    +  + ++Q ++    ++
Sbjct  296  FNQVIIFVKSTLRATELDKLLRECNFPSI--------------AVHSGVSQEERIRRYKE  341

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQS---VYAFVA  483
            F++    + VAT V   G+DI   N+ + Y +  +  S +   GRA    +     +FV 
Sbjct  342  FKEFNKRICVATDVFGRGIDIERINLAINYDMPADADSYLHRVGRAGRFGTKGLAVSFVT  401

Query  484  TEGSRELKRELINEALETLMEQAVAAVQK--MDQAEYQAK  521
             +  +E+       A+E   E  +    K  +D + Y A 
Sbjct  402  NDQDKEVLT-----AIEKRFEVPIPEFPKDGIDASTYMAS  436


 Score = 53.6 bits (127),  Expect = 4e-06, Method: Composition-based stats.
 Identities = 42/268 (16%), Positives = 90/268 (34%), Gaps = 34/268 (13%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG-AKVVVLVNRVHLVTQ---  62
            Q   I  A+ G +II    +G GKT        + +E V G   V+V+ +   L  Q   
Sbjct  79   QQTCIPQAMLGGDIICQAKSGLGKTAVFVLTTLQQVEPVAGECSVLVMCHTRELAFQIRN  138

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHD----LLICTAELLQMALTSPEEEE  118
                F + +    T     G   P      L +  +    +++ T   L  AL     ++
Sbjct  139  EYNRFSKYMPDIKTGVFFGG--TPIQKDAELLKNKETHPHIIVGTPGRL-NAL---VRDK  192

Query  119  HVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKL  178
             + L+   + V+DEC            + +      Q+     QV+  +A+         
Sbjct  193  FLRLSSVRIFVLDECDKMLDQIDMRRDVQEIFRATPQQK----QVMMFSAT---------  239

Query  179  DGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMD  238
                + +  +C            +   +L  H  Q  + +     + ++     L +L+D
Sbjct  240  --LSDEIKPICKKFMQNPTEHYVDEDTKLTLHGLQ--QYFVALEEKEKN---RKLNELLD  292

Query  239  QIHDHLEMPELSRKFGTQMYEQQVVKLS  266
             +  +  +  +         ++ + + +
Sbjct  293  DLQFNQVIIFVKSTLRATELDKLLRECN  320


>sp|P39517|DHH1_YEAST ATP-dependent RNA helicase DHH1 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DHH1 
PE=1 SV=1
Length=506

 Score = 99.1 bits (245),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 59/375 (16%), Positives = 121/375 (32%), Gaps = 25/375 (7%)

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
            SP    A  +      +L    N       +     P L++   +  K   L    +++ 
Sbjct  70   SPIQEEAIPVAITGRDILARAKN---GTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRE-  125

Query  229  FGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN  288
                  +++  +  H  +  +    GT + +  + +L+E   +      RV  L  R+  
Sbjct  126  LALQTSQVVRTLGKHCGISCMVTTGGTNLRDDIL-RLNETVHILVGTPGRVLDLASRKVA  184

Query  289  DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPEN  348
            D  L   ++  +D    +     +  + +            LF                +
Sbjct  185  D--LSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLH  242

Query  349  PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI-----RAQLL  403
               E+    L  + +     +   F   RQ  H L     + Q  Q +       R +LL
Sbjct  243  KPYEI---NLMEELTLKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELL  299

Query  404  ------IGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG  457
                  +G         M Q+++ +V  +F+ G +  LV + +   G+DI   NVV+ + 
Sbjct  300  AKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFD  359

Query  458  LLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQA  516
                  + +   GR  R      A      +    R  + +  + L  +  A    +D++
Sbjct  360  FPKTAETYLHRIGRSGRFGHLGLAINLINWN---DRFNLYKIEQELGTEIAAIPATIDKS  416

Query  517  EYQAKIRDLQQAALT  531
             Y A+  +       
Sbjct  417  LYVAENDETVPVPFP  431


 Score = 52.5 bits (124),  Expect = 9e-06, Method: Composition-based stats.
 Identities = 30/132 (23%), Positives = 51/132 (39%), Gaps = 12/132 (9%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA----KVVVLVNRVHLVTQ  62
            Q E I  A+ G++I+     G GKT  AA+V    LE V       + +++V    L  Q
Sbjct  73   QEEAIPVAITGRDILARAKNGTGKT--AAFVI-PTLEKVKPKLNKIQALIMVPTRELALQ  129

Query  63   HGEEFRRMLDGRWTVTTL-SGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVE  121
              +  R +         + +G    R     L     +L+ T   +          +  +
Sbjct  130  TSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLD----LASRKVAD  185

Query  122  LTVFSLIVVDEC  133
            L+  SL ++DE 
Sbjct  186  LSDCSLFIMDEA  197


>sp|A6ZXG9|DHH1_YEAS7 ATP-dependent RNA helicase DHH1 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=DHH1 PE=3 SV=1
Length=506

 Score = 99.1 bits (245),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 59/375 (16%), Positives = 121/375 (32%), Gaps = 25/375 (7%)

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
            SP    A  +      +L    N       +     P L++   +  K   L    +++ 
Sbjct  70   SPIQEEAIPVAITGRDILARAKN---GTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRE-  125

Query  229  FGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN  288
                  +++  +  H  +  +    GT + +  + +L+E   +      RV  L  R+  
Sbjct  126  LALQTSQVVRTLGKHCGISCMVTTGGTNLRDDIL-RLNETVHILVGTPGRVLDLASRKVA  184

Query  289  DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPEN  348
            D  L   ++  +D    +     +  + +            LF                +
Sbjct  185  D--LSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLH  242

Query  349  PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI-----RAQLL  403
               E+    L  + +     +   F   RQ  H L     + Q  Q +       R +LL
Sbjct  243  KPYEI---NLMEELTLKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELL  299

Query  404  ------IGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG  457
                  +G         M Q+++ +V  +F+ G +  LV + +   G+DI   NVV+ + 
Sbjct  300  AKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFD  359

Query  458  LLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQA  516
                  + +   GR  R      A      +    R  + +  + L  +  A    +D++
Sbjct  360  FPKTAETYLHRIGRSGRFGHLGLAINLINWN---DRFNLYKIEQELGTEIAAIPATIDKS  416

Query  517  EYQAKIRDLQQAALT  531
             Y A+  +       
Sbjct  417  LYVAENDETVPVPFP  431


 Score = 52.5 bits (124),  Expect = 9e-06, Method: Composition-based stats.
 Identities = 30/132 (23%), Positives = 51/132 (39%), Gaps = 12/132 (9%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA----KVVVLVNRVHLVTQ  62
            Q E I  A+ G++I+     G GKT  AA+V    LE V       + +++V    L  Q
Sbjct  73   QEEAIPVAITGRDILARAKNGTGKT--AAFVI-PTLEKVKPKLNKIQALIMVPTRELALQ  129

Query  63   HGEEFRRMLDGRWTVTTL-SGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVE  121
              +  R +         + +G    R     L     +L+ T   +          +  +
Sbjct  130  TSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLD----LASRKVAD  185

Query  122  LTVFSLIVVDEC  133
            L+  SL ++DE 
Sbjct  186  LSDCSLFIMDEA  197


>sp|A2QY39|DHH1_ASPNC ATP-dependent RNA helicase dhh1 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=dhh1 PE=3 SV=1
Length=505

 Score = 99.1 bits (245),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 55/322 (17%), Positives = 99/322 (31%), Gaps = 30/322 (9%)

Query  234  KKLMDQI---HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDA  290
              LMD I   +D + +   +      +  + V  LSE       +  ++ +       + 
Sbjct  153  TGLMDDIIRLNDAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQ  212

Query  291  LL-IHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENP  349
            LL  H   R V   +A      +    K + +     +  + +     +        E  
Sbjct  213  LLSFHPKDRQVMLFSATFPLIVKSF--KDKHMRNPYEINLMDELTLRGITQYYAFVEEKQ  270

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+      L   FS     + IIF  +      L   + +              +G    
Sbjct  271  KV----HCLNTLFSKLQINQSIIFCNSTNRVELLAKKITE--------------LGYSCF  312

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 M Q+ +  V   F++G    LV + +   G+DI   NVV+ +    N  + +   
Sbjct  313  YSHARMLQQHRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRI  372

Query  470  GR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM-----DQAEYQAKIR  523
            GR  R      A              I + L T ++     + K              I 
Sbjct  373  GRSGRFGHLGLAINLINWEDRFNLYKIEQELGTEIQPIPQNIDKKLYVYDSPDTIPRPIA  432

Query  524  DLQQAALTKRAAQAAQRENQRQ  545
            +  Q  +T +AA A   E +  
Sbjct  433  NPSQPQITAQAANANIGERRHN  454


 Score = 50.6 bits (119),  Expect = 4e-05, Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 46/131 (35%), Gaps = 10/131 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA---KVVVLVNRVHLVTQH  63
            Q E I  AL G++I+     G GKT  AA+V          +   + ++LV    L  Q 
Sbjct  74   QEETIPVALTGRDILARAKNGTGKT--AAFVIPTLERINPKSTKTQALILVPTRELALQT  131

Query  64   GEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
                + +       V   +G  G       L     +L+ T   +         +   +L
Sbjct  132  SHVCKTLGKHLGINVMVTTGGTGLMDDIIRLNDAVHILVGTPGRVLD----LASKGVADL  187

Query  123  TVFSLIVVDEC  133
            +     V+DE 
Sbjct  188  SECPTFVMDEA  198


>sp|Q39189|RH7_ARATH DEAD-box ATP-dependent RNA helicase 7 OS=Arabidopsis 
thaliana OX=3702 GN=RH7 PE=1 SV=2
Length=671

 Score = 100 bits (248),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 32/172 (19%), Positives = 61/172 (35%), Gaps = 22/172 (13%)

Query  365  SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI  424
            S+  + IIF  T+     L   L                   G+ +    + Q  ++  +
Sbjct  348  SSGGQTIIFAETKVQVSELSGLLD------------------GSRALHGEIPQSQREVTL  389

Query  425  QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVA  483
              F++G    LVAT+VA  GLDI    ++++        + +   GR  RA  +  A   
Sbjct  390  AGFRNGKFATLVATNVAARGLDINDVQLIIQCEPPREVEAYIHRSGRTGRAGNTGVAVTL  449

Query  484  TEGSRELKRELINEA---LETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTK  532
             +  +     +  EA    E L       + +    E   K++ +  + +  
Sbjct  450  YDSRKSSVSRIEKEAGIKFEHLAAPQPDEIARSGGMEAAEKVKQVCDSVVPA  501


 Score = 43.6 bits (101),  Expect = 0.007, Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 42/121 (35%), Gaps = 18/121 (15%)

Query  26   TGAGKTRAAAYVAKRHLETVDGA-----------KVVVLVNRVHLVTQHGEEFRRMLD--  72
            TG GKT A        L                  V+VL+    L  Q   +F       
Sbjct  142  TGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDAYGGSL  201

Query  73   GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDE  132
            G  +     GD  P    G L R  D+++ T   ++  +    E ++++ +     V+DE
Sbjct  202  GLSSCCLYGGDSYP-VQEGKLKRGVDIVVGTPGRIKDHI----ERQNLDFSYLQFRVLDE  256

Query  133  C  133
             
Sbjct  257  A  257


>sp|Q0U6X2|MAK5_PHANO ATP-dependent RNA helicase MAK5 OS=Phaeosphaeria 
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) 
OX=321614 GN=MAK5 PE=3 SV=1
Length=817

 Score = 100 bits (248),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 73/195 (37%), Gaps = 25/195 (13%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K   L  +L          R +IFT +  +   L  +LQ                     
Sbjct  528  KDLYLYSLLMFY----PKKRALIFTNSISAVRRLTPFLQNLALPALP-------------  570

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
               + M Q+ +   I++F++   ++LVAT VA  GLDIP   +V+ Y L     + V   
Sbjct  571  -LHSSMAQKARLRSIERFKERPGSILVATDVAARGLDIPKVELVIHYHLPRAADTYVHRS  629

Query  470  GR-ARADQSVYAFVATE-GSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQ  527
            GR ARA+ S  + +          R LI +      E       K  +  Y  +  D+ +
Sbjct  630  GRTARAEASGSSILICAPEEVGGVRRLIAKVHARADE-----APKSKKTAYFIRTLDIDR  684

Query  528  AALTKRAAQAAQREN  542
              + +   +A+  + 
Sbjct  685  RIVARLKPRASISKK  699


 Score = 43.2 bits (100),  Expect = 0.009, Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 55/150 (37%), Gaps = 19/150 (13%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAK--------VVVLVNRV  57
            Q   I   + G+++I    TG+GKT A    + + +L +   +K         +++    
Sbjct  276  QASTIPEIMAGRDVIGKASTGSGKTLAFGIPIIESYLASKSKSKDVKDKTPLALIIAPTR  335

Query  58   HLVTQ---HGEEFRRMLDGRWT-VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTS  113
             L  Q   H              + +++G +  +     L    D+++ T   L   +++
Sbjct  336  ELAHQITAHLTALCAKGAFEAPLIASVTGGLAVQKQRRQL-EKADIIVGTPGRLWEVIST  394

Query  114  PEEEEHV-ELTVFSLIVVDECHH--THKDT  140
                  + ++     +VVDE     +  + 
Sbjct  395  G--HGLLEKVKQIRFLVVDEADRLLSQGNY  422


>sp|Q55CP6|DDX1_DICDI Probable ATP-dependent RNA helicase ddx1 
OS=Dictyostelium discoideum OX=44689 GN=ddx1 PE=3 SV=1
Length=765

 Score = 100 bits (248),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 53/125 (42%), Gaps = 4/125 (3%)

Query  366  NSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQ  425
               + IIF RTR     +  +L+   G  T  +  +      +   +     R +++ ++
Sbjct  533  KMDQAIIFARTRLDCDHIHQFLKDAGGGNTSGLEGEFSSTVLHGGDNIS---RARKDNLE  589

Query  426  KFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVAT  484
            KF++G +  L+ T VA  G+DI     ++ Y L  +    +   GR  R+D+   A    
Sbjct  590  KFRNGDVRFLICTDVAARGIDIRGLPYMINYTLPESFEDYIHRVGRVGRSDRIGLAISLV  649

Query  485  EGSRE  489
               +E
Sbjct  650  AYEQE  654


>sp|Q8N8A6|DDX51_HUMAN ATP-dependent RNA helicase DDX51 OS=Homo 
sapiens OX=9606 GN=DDX51 PE=1 SV=3
Length=666

 Score = 99.9 bits (247),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 48/244 (20%), Positives = 95/244 (39%), Gaps = 25/244 (10%)

Query  301  DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPK-LEMLEKILQ  359
              L   Q       +    +   +    +        L H       + K L +L  +L+
Sbjct  442  QQLGLHQPRLFSTGLAHRGLEDTDGDGDSGKYAFPVGLTHHYVPCSLSSKPLVVLHLVLE  501

Query  360  RQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRD  419
              FS     R + FT +R+++H L L +Q   G+   +  ++   G              
Sbjct  502  MGFS-----RVLCFTNSRENSHRLFLLVQAFGGVDVAEFSSRYGPG-------------Q  543

Query  420  QQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSV  478
            ++ ++++F+ G + LL++T     G+D+    +VV Y       + V   GR ARA ++ 
Sbjct  544  RRMILKQFEQGKIQLLISTDATARGIDVQGVELVVNYDAPQYLRTYVHRVGRTARAGKTG  603

Query  479  YAF--VATEGSRELKRELINEALETLMEQAVAA--VQKMDQAEYQAKIRDLQQAALTKRA  534
             AF  +     R   R L       L    +++  +Q +    Y+  +  L+++   +R 
Sbjct  604  QAFTLLLKVQERRFLRMLTEAGAPELQRHELSSKLLQPLVP-RYEEALSQLEESVKEERK  662

Query  535  AQAA  538
             +AA
Sbjct  663  QRAA  666


 Score = 52.9 bits (125),  Expect = 9e-06, Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 41/127 (32%), Gaps = 14/127 (11%)

Query  20   IIIWLPTGAGKT--RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDG-RWT  76
            + +  PTG+GKT       V       V   + +V++    L  Q  + F    D     
Sbjct  252  LCVSAPTGSGKTLAFVIPVVQALLSRVVCHIRALVVLPTKELAQQVSKVFNIYTDATPLR  311

Query  77   VTTLSGDMGPRAGFGHLARCH--------DLLICTAELLQMALTSPEEEEHVELTVFSLI  128
            V+ ++G          L +          D+++ T   L   +          L     +
Sbjct  312  VSLVTGQKSLAKEQESLVQKTADGYRCLADIVVATPGRLVDHIDQTPG---FSLQQLRFL  368

Query  129  VVDECHH  135
            ++DE   
Sbjct  369  IIDEADR  375


>sp|Q0U7S9|DHH1_PHANO ATP-dependent RNA helicase DHH1 OS=Phaeosphaeria 
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) 
OX=321614 GN=DHH1 PE=3 SV=1
Length=522

 Score = 99.1 bits (245),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 48/294 (16%), Positives = 92/294 (31%), Gaps = 27/294 (9%)

Query  229  FGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN  288
              D + +L D +H  +  P            + V  LS        +  ++ +       
Sbjct  157  LKDDIIRLSDPVHIIVGTPGRILDLAG----KGVADLSTCQTFVMDEADKLLSPEFTPVV  212

Query  289  DALL-IHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPE  347
            + LL  H   R V   +A      +    K + + +   +  + +     +        E
Sbjct  213  EQLLGFHPKDRQVMLFSATFPIVVKTF--KDKHMNSPYEINLMDELTLRGITQYYAFVEE  270

Query  348  NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG  407
              K+      L   F+     + IIF  +      L   + +              +G  
Sbjct  271  KQKV----HCLNTLFNKLQINQSIIFCNSTNRVELLAKKITE--------------LGYS  312

Query  408  NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
                   M Q ++  V   F++G    LV + +   G+DI   NVV+ +    N  + + 
Sbjct  313  CFYSHARMLQHNRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLH  372

Query  468  ARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA  520
              GR  R      A              I + L T + Q +  V + +   Y++
Sbjct  373  RIGRSGRFGHLGLAINLINWEDRFNLYRIEQELGTEI-QPIPQVIEKNLYVYES  425


 Score = 51.3 bits (121),  Expect = 2e-05, Method: Composition-based stats.
 Identities = 27/131 (21%), Positives = 48/131 (37%), Gaps = 10/131 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG---AKVVVLVNRVHLVTQH  63
            Q E I  AL G++I+     G GKT  AA+V              + ++LV    L  Q 
Sbjct  76   QEETIPVALTGRDILARAKNGTGKT--AAFVIPTLERVNPKISKTQALILVPTRELALQT  133

Query  64   GEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
             +  + +       V   +G  G +     L+    +++ T   +         +   +L
Sbjct  134  SQVCKTLGKHLGINVMVSTGGTGLKDDIIRLSDPVHIIVGTPGRILD----LAGKGVADL  189

Query  123  TVFSLIVVDEC  133
            +     V+DE 
Sbjct  190  STCQTFVMDEA  200


>sp|A3LSJ2|DBP6_PICST ATP-dependent RNA helicase DBP6 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=DBP6 PE=3 SV=2
Length=591

 Score = 99.5 bits (246),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 75/191 (39%), Gaps = 17/191 (9%)

Query  350  KLEMLEKILQRQFSSSNS-PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN  408
            K  +   IL +    +N     +IFT++ +++  L   L+   G     +    +    N
Sbjct  407  KASIKPLILAKYLLENNKLSNVLIFTKSNEASIRLCKLLELMFGKLHPSMNIAYINSTNN  466

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
             S         + ++++ F    +N+LVAT +   G+DI     V+ Y L  +    V  
Sbjct  467  KSAI-------RTKILKDFSTQKINILVATDLIARGIDILSITDVINYDLPNSSREYVHR  519

Query  469  RGR-ARADQSVYAFVATEGSRELKRELI--------NEALETLMEQAVAAVQKMDQAEYQ  519
             GR ARA+Q+ +A+    G  E K            ++ +E +  +    +   D+  Y 
Sbjct  520  VGRTARANQTGHAYTLCFGKGEAKWFKKIISDVGRGDKTIEKVEIELKELIVAEDENVYN  579

Query  520  AKIRDLQQAAL  530
              +  L +   
Sbjct  580  ECLESLSKQVF  590


 Score = 58.3 bits (139),  Expect = 2e-07, Method: Composition-based stats.
 Identities = 26/120 (22%), Positives = 49/120 (41%), Gaps = 8/120 (7%)

Query  20   IIIWLPTGAGKTRAAAYVAKRHLET--VDGAKVVVLVNRVHLVTQHGEEFRRMLDGRW-T  76
            I++   TG+GKT A +      L    V   + +VLV    L+ Q    F ++  G   +
Sbjct  204  ILVNAATGSGKTLAYSIPIIEALHNRVVPRVRAIVLVPTKPLINQVKATFVQLSRGTNLS  263

Query  77   VTTLSGDMGPRAGFGHLARC-HDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH  135
            V +L  D+  +     +     D+++ T   L   +++      + L     +V+DE   
Sbjct  264  VVSLRNDVSIKEEGIKIVNSPPDIIVSTPGRLVEHISNKS----INLNSLQFLVIDEADR  319


>sp|Q4R4Y9|IF4A2_MACFA Eukaryotic initiation factor 4A-II OS=Macaca 
fascicularis OX=9541 GN=EIF4A2 PE=2 SV=1
Length=408

 Score = 97.9 bits (242),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 33/221 (15%), Positives = 79/221 (36%), Gaps = 28/221 (13%)

Query  248  ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRA-VDALAAL  306
             L+R++ +  + +  V       L+   + ++Y +  +      ++  +     D L   
Sbjct  167  MLNRRYLSPKWIKMFVLDEADGMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVT  226

Query  307  QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSN  366
            + F         +        +  F                  KL+ L  +    + +  
Sbjct  227  KKFMRDPIRILVKKEELTLEGIKQFYINVEREEW---------KLDTLCDL----YETLT  273

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
              + +IF  TR+    L       + +   D     L G         M Q+++  ++++
Sbjct  274  ITQAVIFLNTRRKVDWLT------EKMHARDFTVSALHG--------DMDQKERDVIMRE  319

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
            F+ G+  +L+ T +   G+D+   ++V+ Y L TN  + + 
Sbjct  320  FRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIH  360


 Score = 51.0 bits (120),  Expect = 2e-05, Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 58/166 (35%), Gaps = 12/166 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLET-VDGAKVVVLVNRVHLVTQHGE  65
            Q   I+P ++G ++I    +G GKT   A    + LE      + +VL     L  Q  +
Sbjct  61   QQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQK  120

Query  66   EFRRMLDGRWTVTTLS-GDMGPRAGFGHL-ARCHDLLICTAELLQMALTSPEEEEHVELT  123
                + D          G    R     L A    +++ T   +   L       ++   
Sbjct  121  VILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRR----YLSPK  176

Query  124  VFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS  169
               + V+DE      D + +      +    Q+     QV+ L+A+
Sbjct  177  WIKMFVLDEA-----DGMLSRGFKDQIYEIFQKLNTSIQVVLLSAT  217


>sp|A1CMQ7|SUB2_ASPCL ATP-dependent RNA helicase sub2 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=sub2 PE=3 SV=1
Length=441

 Score = 98.3 bits (243),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 52/335 (16%), Positives = 115/335 (34%), Gaps = 51/335 (15%)

Query  200  PQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYE  259
            P  C   +  H+++   Q    + R      D+   +        +  E+      + Y 
Sbjct  124  PGECSVLVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDVEVLSN--KESYP  181

Query  260  QQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQD-----------  308
              VV       L  L   +  +L   R   A ++ +  + +D +   +D           
Sbjct  182  NIVVGT--PGRLNALVRDKKLSL---RNVKAFVLDECDKMLDQIDMRRDVQEIFRATPAD  236

Query  309  ---FYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG--------PENPKLEMLEKI  357
                     +++      ++ +    +   ++   L  HG         E+ K   L ++
Sbjct  237  KQVMMFSATLSQEIRPICKKFMRNPLEVYVDDDTKLTLHGLQQYYIKLSESEKNRKLNEL  296

Query  358  LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ  417
            L          + IIF ++   A+ L   L++                    +  + ++Q
Sbjct  297  LDSL----EFNQVIIFVKSTLRANELDKLLRECNFPSI--------------AVHSGVSQ  338

Query  418  RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQS  477
             ++ +  ++F++    + VAT V   G+DI   N+ + Y L  +  S +   GRA    +
Sbjct  339  EERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGT  398

Query  478  ---VYAFVATEGSRELKRELINEALETLMEQAVAA  509
                 +FV+ E   ++ +E I +  E  + +    
Sbjct  399  KGLSISFVSNEDDEKVLKE-IEKRFEVALPEYPEG  432


 Score = 47.1 bits (110),  Expect = 5e-04, Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 47/135 (35%), Gaps = 14/135 (10%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG-AKVVVLVNRVHLVTQ---  62
            Q   I  A+   +++    +G GKT          LE V G   V+V+ +   L  Q   
Sbjct  85   QQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQIKN  144

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHD----LLICTAELLQMALTSPEEEE  118
                F + L    T     G   P      +    +    +++ T   L  AL   ++  
Sbjct  145  EYARFSKYLPDVKTAVFYGG--TPIQKDVEVLSNKESYPNIVVGTPGRL-NALVRDKK--  199

Query  119  HVELTVFSLIVVDEC  133
             + L      V+DEC
Sbjct  200  -LSLRNVKAFVLDEC  213


>sp|Q09181|DHH1_SCHPO Putative ATP-dependent RNA helicase ste13 
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 
GN=ste13 PE=3 SV=1
Length=485

 Score = 98.7 bits (244),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 58/386 (15%), Positives = 113/386 (29%), Gaps = 34/386 (9%)

Query  165  GLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRR  224
            G TA+       K+D   + +  L         +     C  L +H              
Sbjct  93   GKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVCKTLGKHMNVKVMVTTG----  148

Query  225  SQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHL  284
                 G  L+  + +++D + +   +      +  + V   SE       +  ++ +   
Sbjct  149  -----GTTLRDDIIRLNDTVHIVVGTPGRVLDLAGKGVADFSECTTFVMDEADKLLSPEF  203

Query  285  RRYNDALLIH-DTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLAT  343
                + LL +    R +   +A      +  + K   L     +  + +     +     
Sbjct  204  TPIIEQLLSYFPKNRQISLYSATFPLIVKNFMDK--HLNKPYEINLMDELTLRGVTQYYA  261

Query  344  HGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLL  403
               E+ K+      L   FS     + IIF  +      L   + +              
Sbjct  262  FVDESQKV----HCLNTLFSKLQINQSIIFCNSTNRVELLAKKITE--------------  303

Query  404  IGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI  463
            +G         M Q  +  V   F++G    LV + +   G+DI   NVV+ +    N  
Sbjct  304  LGYSCFYSHAKMLQSHRNRVFHNFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAE  363

Query  464  SMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKI  522
            + +   GR  R      A      +       I   L T ++    ++   D + Y    
Sbjct  364  TYLHRIGRSGRFGHRGLAISFISWADRFNLYRIENELGTEIQPIPPSI---DPSLYVFPN  420

Query  523  RDLQQAALTKRAAQAAQRENQRQQFP  548
             D Q       +A       Q +   
Sbjct  421  GDYQIPRPLTASADQVLAAQQAKGQE  446


 Score = 51.3 bits (121),  Expect = 2e-05, Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 50/132 (38%), Gaps = 12/132 (9%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK----VVVLVNRVHLVTQ  62
            Q E I  AL G++I+     G GKT  AA+V    LE VD  K     ++LV    L  Q
Sbjct  71   QEESIPIALSGRDILARAKNGTGKT--AAFVIPS-LEKVDTKKSKIQTLILVPTRELALQ  127

Query  63   HGEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVE  121
              +  + +       V   +G    R     L     +++ T   +         +   +
Sbjct  128  TSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLNDTVHIVVGTPGRVLD----LAGKGVAD  183

Query  122  LTVFSLIVVDEC  133
             +  +  V+DE 
Sbjct  184  FSECTTFVMDEA  195


>sp|A6R3R5|IF4A_AJECN ATP-dependent RNA helicase eIF4A OS=Ajellomyces 
capsulatus (strain NAm1 / WU24) OX=2059318 GN=TIF1 PE=3 
SV=1
Length=385

 Score = 97.6 bits (241),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 48/118 (41%), Gaps = 14/118 (12%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K E     L   + +    + +IF  TR+    L   L         D     + G    
Sbjct  247  KEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKL------TARDFTVSAMHG----  296

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
                 M Q+ +  ++++F+ G+  +L+AT +   G+D+   ++V+ Y L  N  + + 
Sbjct  297  ----DMEQQQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIH  350


 Score = 53.6 bits (127),  Expect = 3e-06, Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 45/129 (35%), Gaps = 6/129 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q   IMP ++G ++I    +G GKT   +    ++    +   + ++L     L  Q  +
Sbjct  52   QQRAIMPVIKGSDVIAQAQSGTGKTATFSISALQKVDTNLKACQALILAPTRELAQQIQK  111

Query  66   EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
                + D          G +  R     L     +++ T   +   +        ++   
Sbjct  112  VVVAIGDFMSIECHACIGGISVREDMKALQDGPQVVVGTPGRVHDMIQRRV----LKTDH  167

Query  125  FSLIVVDEC  133
              + V+DE 
Sbjct  168  MKMFVLDEA  176


>sp|Q1E5R1|DHH1_COCIM ATP-dependent RNA helicase DHH1 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=DHH1 PE=3 SV=1
Length=512

 Score = 98.7 bits (244),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 51/328 (16%), Positives = 99/328 (30%), Gaps = 36/328 (11%)

Query  229  FGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN  288
              D + +L D +H  +  P       +    + V  LSE       +  ++ +       
Sbjct  155  LQDDIIRLSDTVHIIVGTPGRILDLAS----KGVADLSECTTFVMDEADKLLSPEFTPVI  210

Query  289  DALL-IHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPE  347
            + LL  H   R V   +A      +    K + +     +  + +     +        E
Sbjct  211  EQLLSFHPKDRQVMLFSATFPMIVKSF--KDKHMRNPYEINLMDELTLRGITQYYAFVEE  268

Query  348  NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG  407
              K+      L   FS     + IIF  +      L   + +              +G  
Sbjct  269  RQKV----HCLNTLFSKLQINQSIIFCNSTNRVELLAKKITE--------------LGYS  310

Query  408  NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
                   M Q+++  V   F++G    LV + +   G+DI   NVV+ +    N  + + 
Sbjct  311  CFYSHARMLQQNRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLH  370

Query  468  ARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAV----------QKMDQA  516
              GR  R      A              I + L T ++    ++          + + + 
Sbjct  371  RIGRSGRFGHLGLAINLINWDDRYNLYKIEQELGTEIQPIPPSIDKKLYVYDTPETIPRP  430

Query  517  EYQAKIRDLQQAALTKRAAQAAQRENQR  544
               A       A L + +     R+   
Sbjct  431  IANASTERNPPAQLAQSSDNQNHRQAHH  458


 Score = 54.0 bits (128),  Expect = 3e-06, Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 50/131 (38%), Gaps = 10/131 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG---AKVVVLVNRVHLVTQH  63
            Q E I  AL G++I+     G GKT  AA+V      T       + ++LV    L  Q 
Sbjct  74   QEETIPVALTGRDILARAKNGTGKT--AAFVIPTLERTNPKISKTQALILVPTRELALQT  131

Query  64   GEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
             +  + +       V   +G  G +     L+    +++ T   +         +   +L
Sbjct  132  SQVCKTLGKHLGINVMVTTGGTGLQDDIIRLSDTVHIIVGTPGRILD----LASKGVADL  187

Query  123  TVFSLIVVDEC  133
            +  +  V+DE 
Sbjct  188  SECTTFVMDEA  198


>sp|P10486|T1R1_ECOLX Type I restriction enzyme EcoR124I/EcoR124II 
endonuclease subunit OS=Escherichia coli OX=562 GN=hsdR 
PE=1 SV=2
Length=1038

 Score = 100 bits (248),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 50/369 (14%), Positives = 102/369 (28%), Gaps = 38/369 (10%)

Query  1    MELRSYQWEVIMP-------ALEGKN-------IIIWLPTGAGKTRAAAYVAKRHLETVD  46
            + +R YQ             +   KN         IW  TG+GKT  +   A+   E   
Sbjct  270  LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAARLATELDF  329

Query  47   GAKVVVLVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAEL  106
              KV  +V+R  L  Q  +E++R        +  +  +            + +++ T + 
Sbjct  330  IDKVFFVVDRKDLDYQTMKEYQRFSPDSVNGSENTAGLKRNLDKDD----NKIIVTTIQK  385

Query  107  LQMALTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGL  166
            L   L   E +  V      + + DECH +        +  ++               G 
Sbjct  386  L-NNLMKAESDLPVYNQQV-VFIFDECHRSQFGEAQKNLKKKFKRYYQ---------FGF  434

Query  167  TASPGTGGASKLDGAINHVLQLCANLDTWCIMSP-QNCCPQLQEHSQQPCKQYNLCHRRS  225
            T +P     +        V      L ++ I    ++      +      +         
Sbjct  435  TGTPIFPENALGSETTASVFGRE--LHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETE  492

Query  226  QDPFGDLLKKLMDQIHDHLEMPEL------SRKFGTQMYEQQVVKLSEAAALAGLQEQRV  279
             D       +        + + E+      + +  T          +   A++ +   + 
Sbjct  493  TDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKA  552

Query  280  YALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELA  339
            Y    +R  +             +A +  F   E       +  E    +  D    E  
Sbjct  553  YYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFL  612

Query  340  HLATHGPEN  348
              A     +
Sbjct  613  DAAIREYNS  621


>sp|A1DL85|SUB2_NEOFI ATP-dependent RNA helicase sub2 OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / 
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=sub2 
PE=3 SV=1
Length=441

 Score = 97.9 bits (242),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 50/335 (15%), Positives = 112/335 (33%), Gaps = 51/335 (15%)

Query  200  PQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYE  259
            P  C   +  H+++   Q    + R      D+   +        +  E+      + Y 
Sbjct  124  PGECSVLVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDIEVLSN--KESYP  181

Query  260  QQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQD-----------  308
              VV          L           R   A ++ +  + +D +   +D           
Sbjct  182  NIVV-----GTPGRLNALVREKKLSLRNVKAFVLDECDKMLDQIDMRRDVQEIFRATPAD  236

Query  309  ---FYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG--------PENPKLEMLEKI  357
                     +++      ++ +    +   ++   L  HG         E+ K   L ++
Sbjct  237  KQVMMFSATLSQEIRPICKKFMRNPLEVYVDDDTKLTLHGLQQYYIKLSESEKNRKLNEL  296

Query  358  LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ  417
            L          + IIF ++   A+ L   L++                    +  + ++Q
Sbjct  297  LDSL----EFNQVIIFVKSTLRANELDKLLRECNFPSI--------------AVHSGVSQ  338

Query  418  RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQS  477
             ++ +  ++F++    + VAT V   G+DI   N+ + Y L  +  S +   GRA    +
Sbjct  339  EERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGT  398

Query  478  ---VYAFVATEGSRELKRELINEALETLMEQAVAA  509
                 +FV++E   ++ +E I +  E  + +    
Sbjct  399  KGLSISFVSSEEDEKVLKE-IEKRFEVALPEYPEG  432


 Score = 47.9 bits (112),  Expect = 3e-04, Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 47/135 (35%), Gaps = 14/135 (10%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG-AKVVVLVNRVHLVTQ---  62
            Q   I  A+   +++    +G GKT          LE V G   V+V+ +   L  Q   
Sbjct  85   QQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQIKN  144

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHD----LLICTAELLQMALTSPEEEE  118
                F + L    T     G   P      +    +    +++ T   L  AL   ++  
Sbjct  145  EYARFSKYLPDVKTAVFYGG--TPIQKDIEVLSNKESYPNIVVGTPGRL-NALVREKK--  199

Query  119  HVELTVFSLIVVDEC  133
             + L      V+DEC
Sbjct  200  -LSLRNVKAFVLDEC  213


>sp|A6R603|SUB2_AJECN ATP-dependent RNA helicase SUB2 OS=Ajellomyces 
capsulatus (strain NAm1 / WU24) OX=2059318 GN=SUB2 PE=3 
SV=2
Length=442

 Score = 97.9 bits (242),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 53/328 (16%), Positives = 112/328 (34%), Gaps = 37/328 (11%)

Query  200  PQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYE  259
            P  C   +  H+++   Q    + R      D+   +        +  EL     T    
Sbjct  125  PGECSILVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPMQKDIELLSSKDTYPSI  184

Query  260  QQV--VKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDF-----YHR  312
                  +L+       L  + + A  L   +  L   D  R V  +              
Sbjct  185  VVGTPGRLNALVRDKKLSLRNIKAFVLDECDKMLDQIDMRRDVQEIFRATPADKQVMMFS  244

Query  313  EHVTKTQILCAERRLLALFDDRKNELAHLATHG--------PENPKLEMLEKILQRQFSS  364
              +++      ++ +    +   ++   L  HG         E+ K   L ++L      
Sbjct  245  ATLSQEVRPICKKFMRNPLEVYVDDDTKLTLHGLLQYYIKLGESEKNRKLNELLDSL---  301

Query  365  SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI  424
                + IIF ++ Q A  L   L++                    +  + ++Q ++ +  
Sbjct  302  -EFNQVIIFVKSTQRASELDKLLRECNFPSI--------------AVHSGVSQEERIKRY  346

Query  425  QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQS---VYAF  481
            ++F++    + VAT V   G+DI   N+ + Y L  +  S +   GRA    +     +F
Sbjct  347  KEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLAISF  406

Query  482  VATEGSRELKRELINEALETLMEQAVAA  509
            V++E  +E+ ++ I +  E  + +    
Sbjct  407  VSSEQDQEVLKD-IEKRFEVALPEYPQG  433


 Score = 49.8 bits (117),  Expect = 6e-05, Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 47/135 (35%), Gaps = 14/135 (10%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG-AKVVVLVNRVHLVTQ---  62
            Q   I  A+   +++    +G GKT          LE V G   ++V+ +   L  Q   
Sbjct  86   QQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSILVMCHTRELAYQIKN  145

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHD----LLICTAELLQMALTSPEEEE  118
                F + L    T     G   P      L    D    +++ T   L  AL   ++  
Sbjct  146  EYARFSKYLPDVKTAVFYGG--TPMQKDIELLSSKDTYPSIVVGTPGRL-NALVRDKK--  200

Query  119  HVELTVFSLIVVDEC  133
             + L      V+DEC
Sbjct  201  -LSLRNIKAFVLDEC  214


>sp|Q6DRI7|DDX51_DANRE ATP-dependent RNA helicase DDX51 OS=Danio 
rerio OX=7955 GN=ddx51 PE=2 SV=1
Length=652

 Score = 99.1 bits (245),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 83/198 (42%), Gaps = 23/198 (12%)

Query  333  DRKNELAHLATHGPENPK-LEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQ  391
                 L+        + K L +L  +L+ +FS       + FT +R+ AH L L ++   
Sbjct  460  HFPQGLSEYYVPCTFSKKPLIILHFLLRLKFSP-----ALCFTNSREGAHRLYLLVK---  511

Query  392  GLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN  451
                      L  G   +  S+ ++  ++Q+ ++ F+ G + LL++T  A  G+DI    
Sbjct  512  ----------LFGGVEVAEFSSKLSPGERQKTLKDFEKGKIPLLISTDAAARGIDINGVK  561

Query  452  VVVRYGLLTNEISMVQARGR-ARADQSV--YAFVATEGSRELKRELINEALETLMEQAV-  507
             V+ Y       + +   GR ARA ++   + F+     +   + + +     + +Q V 
Sbjct  562  CVINYDAPQYIRTYIHRVGRTARAGKAGLAFTFLLKVQEKRFLKMVSDAGSPGIQKQHVH  621

Query  508  AAVQKMDQAEYQAKIRDL  525
                K  ++ Y+  + +L
Sbjct  622  PEALKSMESRYEQVLAEL  639


 Score = 51.3 bits (121),  Expect = 2e-05, Method: Composition-based stats.
 Identities = 24/127 (19%), Positives = 41/127 (32%), Gaps = 14/127 (11%)

Query  20   IIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLV--NRVHLVTQHGEEFRRMLDGRW-T  76
            + +  PTG+GKT A      + L      +V  L       L  Q    F    +G    
Sbjct  243  VCVSAPTGSGKTLAFVIPVVQALSKRVVRQVRALAVLPTKELAQQVSNVFSAYTEGSSLK  302

Query  77   VTTLSGDMGPRAGFGHLARCH--------DLLICTAELLQMALTSPEEEEHVELTVFSLI  128
            V  ++G     A    L+           D+++ T   L   +    +     L     +
Sbjct  303  VVMITGQKSFAAEQTALSEIRGGVSHSMADIVVATPGRLVDHIN---KNSSFSLQHLRFL  359

Query  129  VVDECHH  135
            ++DE   
Sbjct  360  IIDEADR  366


>sp|Q4P331|IF4A_USTMA ATP-dependent RNA helicase eIF4A OS=Ustilago 
maydis (strain 521 / FGSC 9021) OX=237631 GN=TIF1 PE=3 
SV=1
Length=411

 Score = 97.6 bits (241),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 43/304 (14%), Positives = 103/304 (34%), Gaps = 28/304 (9%)

Query  165  GLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRR  224
            G TA+       ++D +I  V  L            Q     L ++ +  C         
Sbjct  87   GKTATFSIAILQRIDPSIKAVQALILAPTRELAQQIQKVVIALGDYMKIDCHACIG----  142

Query  225  SQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHL  284
                 G  +++ M ++++  ++   +      M  ++  K  +       +   + +   
Sbjct  143  -----GTNVREDMAKLNEGAQVVVGTPGRVYDMINRRAFKTDQLKMFCLDEADEMLSRGF  197

Query  285  RRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLAT-  343
            +     +           L +         VTK  +    R L+   +     +      
Sbjct  198  KDQMYEVFQLLPQDTQCVLLSATMPQEVLEVTKKFMRDPIRILVKRDELTLEGIKQFYVA  257

Query  344  HGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLL  403
               E+ KL+ L  +    + +    + +IF  TR+    L   L  ++            
Sbjct  258  VEKEDWKLDTLCDL----YETVTITQAVIFCNTRRKVDWLTDKLTSRE------------  301

Query  404  IGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI  463
                 S+    M Q  ++ ++++F+ G+  +L+ T +   G+D+   ++V+ Y L +N  
Sbjct  302  --FTVSAMHGDMEQAQREVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRE  359

Query  464  SMVQ  467
            + + 
Sbjct  360  NYIH  363


 Score = 51.3 bits (121),  Expect = 2e-05, Method: Composition-based stats.
 Identities = 20/129 (16%), Positives = 44/129 (34%), Gaps = 6/129 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q   I+P ++G ++I    +G GKT   +  + +R   ++   + ++L     L  Q  +
Sbjct  65   QARAIVPVIKGHDVIAQAQSGTGKTATFSIAILQRIDPSIKAVQALILAPTRELAQQIQK  124

Query  66   EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
                + D          G    R     L     +++ T   +   +         +   
Sbjct  125  VVIALGDYMKIDCHACIGGTNVREDMAKLNEGAQVVVGTPGRVYDMINRRA----FKTDQ  180

Query  125  FSLIVVDEC  133
              +  +DE 
Sbjct  181  LKMFCLDEA  189


>sp|Q4HY71|DBP5_GIBZE ATP-dependent RNA helicase DBP5 OS=Gibberella 
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / 
NRRL 31084 / PH-1) OX=229533 GN=DBP5 PE=3 SV=1
Length=488

 Score = 98.3 bits (243),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 76/216 (35%), Gaps = 32/216 (15%)

Query  328  LALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWL  387
            L   +     ++ +    P++    M   IL + +      + +IF +TR SA  +   +
Sbjct  279  LQRSELTVKGISQMFIDCPDD---NMKYDILCKLYGLMTIGQSVIFVKTRDSASEIERRM  335

Query  388  QQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDI  447
                             G   S+        ++  ++ KF+ G   +L+ T+V   G+D+
Sbjct  336  VAD--------------GHKVSALHAAFDGAERDNLLTKFRQGENKVLITTNVLARGIDV  381

Query  448  PHCNVVVRYGLL--------TNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEA  498
               ++V+ Y +          +  + +   GR  R  +   +       +        +A
Sbjct  382  SSVSMVINYDIPMKGRGDTEPDAETYLHRIGRTGRFGRVGVSISFVYDKKSF------DA  435

Query  499  LETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRA  534
            L  + E     + K+D  ++      +++     RA
Sbjct  436  LSKIAEMYGIDLVKLDTEDWDEAEERVKEVIKKNRA  471


 Score = 49.0 bits (115),  Expect = 1e-04, Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 39/118 (33%), Gaps = 8/118 (7%)

Query  18   KNIIIWLPTGAGKT--RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRW  75
            +N++    +G GKT     A +++      D  + + L     L  Q          GR+
Sbjct  115  RNMLAQSQSGTGKTAAFVTAILSRVDFSKPDQPQALALAPSRELARQIEGVI--NAIGRF  172

Query  76   TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC  133
                      P            +++ T   +   +        ++++   ++V+DE 
Sbjct  173  VENKKVAAAIPGVLPRGEPVRASVIVGTPGTVMDII----RRRQLDISQLRVLVLDEA  226


>sp|Q2U8K6|DBP5_ASPOR ATP-dependent RNA helicase dbp5 OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=dbp5 
PE=3 SV=1
Length=487

 Score = 98.3 bits (243),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 69/201 (34%), Gaps = 32/201 (16%)

Query  352  EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ  411
            E   K L + +        IIF +TR SA  +   +  +              G   +S 
Sbjct  307  EDKYKTLVQLYGLLTVASSIIFVKTRASAAEIEKRMVAE--------------GHTVASL  352

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT-----------  460
            +  +    +  VI +F+ G   +L+ T+V   G+D+   ++V+ Y +             
Sbjct  353  TGGIEGSQRDAVIDQFRAGQAKVLITTNVLARGIDVSTVSMVINYDIPELHQPGAPERQA  412

Query  461  NEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQ  519
            +  + +   GR  R  +   +        E         L  + +     +Q++D  ++ 
Sbjct  413  DFQTYLHRIGRTGRFGRVGVSISFVSNREEW------NMLNQIQQYFNCTIQRVDTKDWD  466

Query  520  AKIRDLQQAALTKRAAQAAQR  540
                 +++     RA     R
Sbjct  467  EVEDIIKKTIKNTRAQAQFGR  487


>sp|Q0CDT1|DBP5_ASPTN ATP-dependent RNA helicase dbp5 OS=Aspergillus 
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=dbp5 
PE=3 SV=1
Length=487

 Score = 98.3 bits (243),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 31/186 (17%), Positives = 67/186 (36%), Gaps = 29/186 (16%)

Query  352  EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ  411
            E   + L   +        IIF +TRQSA  +   +  +              G   +S 
Sbjct  307  EDKYRTLVSLYGLLTVGSSIIFVKTRQSAMEIEKRMVAE--------------GHTVASL  352

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT-----------  460
            +  +    +  VI +F+ G   +L+ T+V   G+D+   ++V+ Y +             
Sbjct  353  TGGIEGSQRDAVIDQFRAGAAKVLITTNVLARGIDVSTVSMVINYDIPELHLPPNQPRQA  412

Query  461  NEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQ  519
            +  + +   GR  R  +   +        E    ++N+ ++     ++  +   D  E +
Sbjct  413  DFQTYLHRIGRTGRFGRVGVSISFVSNRDE--WNMLNQ-IQKYFNTSIQRIDTKDWDEVE  469

Query  520  AKIRDL  525
              I+  
Sbjct  470  DIIKKT  475


>sp|Q5VRY0|RH39_ORYSJ DEAD-box ATP-dependent RNA helicase 39 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os01g0184500 PE=2 
SV=1
Length=625

 Score = 99.1 bits (245),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 77/208 (37%), Gaps = 28/208 (13%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            KLE L ++L+   +  N  + ++F  T  S+ ++  +L + Q                  
Sbjct  353  KLEALLQVLEPSLAKGN--KVMVFCNTLNSSRAVDHFLTENQ--------------ISTV  396

Query  410  SQSTHMTQRDQQEVIQKFQD--GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
            +    +   ++ E + KF++  G    LV T +A  GLD+   + V+ +   +N I  + 
Sbjct  397  NYHGEVPAEERVENLNKFRNEEGDCPTLVCTDLAARGLDL-DVDHVIMFDFPSNSIDYLH  455

Query  468  ARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDL  525
              GR AR         +  +    L        +E  M++  +          +A +   
Sbjct  456  RTGRTARMGAKGKVTSLVAKKDVTLATR-----IEEAMKKNESLEALTTNNVRRAAVN--  508

Query  526  QQAALTKRAAQAAQRENQRQQFPVEHVQ  553
             Q   TK    A +  NQ+ +  V    
Sbjct  509  PQYTSTKGRPSALKVVNQKGRRGVALQT  536


 Score = 56.7 bits (135),  Expect = 5e-07, Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 70/209 (33%), Gaps = 22/209 (11%)

Query  22   IWLP--TGAGKTRAAAYVAKRHLETVDGA----------KVVVLVNRVHLVTQHGEEFRR  69
            + L   TG+GKT A      + L   +            + VVL     L  Q     + 
Sbjct  150  VVLGSHTGSGKTLAYLLPLVQLLRRDEAMLGMSMKPRRPRAVVLCPTRELTEQVFRVAKS  209

Query  70   ML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLI  128
            +    R+  T +SG    R     L    D+++ T   +   +    ++ ++       +
Sbjct  210  ISHHARFRSTMVSGGSRIRPQEDSLNMPVDMVVGTPGRILDHI----KDGNMVYGDIKYL  265

Query  129  VVDECHHTHKDTVYNVIMSQYLELKLQR----AQPLPQVLGLTASPGTGGASKLDGAINH  184
            V+DE   T  D  +   + ++L     R         Q + +TA+        +D     
Sbjct  266  VLDEA-DTMFDQGFGPDIRKFLAPLKNRAAKPGDQGFQTVLVTATMTKAVQKLIDEEFEG  324

Query  185  VLQLCANLDTWCIMSPQNCCPQLQEHSQQ  213
            ++ L        + + ++   +L     +
Sbjct  325  IVHLRTTTFQKRVATARHDFIKLSGSENK  353


>sp|Q2H4D0|SUB2_CHAGB ATP-dependent RNA helicase SUB2 OS=Chaetomium 
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 
6347 / NRRL 1970) OX=306901 GN=SUB2 PE=3 SV=1
Length=434

 Score = 97.6 bits (241),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 50/327 (15%), Positives = 101/327 (31%), Gaps = 37/327 (11%)

Query  202  NCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQ  261
             C   +  H+++   Q    + R      D+   +        +  E+ +   T  +   
Sbjct  118  ECSVLVMCHTRELAFQIRNEYNRFSKYMPDIKTGVFYGGTPIQKDAEVLKNKETHPHIIV  177

Query  262  V--VKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDF-----YHREH  314
                +L+       L+   V    L   +  L   D  R V  +                
Sbjct  178  GTPGRLNALVRDKHLRLGNVRMFVLDECDKMLDQIDMRRDVQEIFRATPQQKQVMMFSAT  237

Query  315  VTKTQILCAERRLLALFDDRKNELAHLATHG--------PENPKLEMLEKILQRQFSSSN  366
            +         + +    +   +E   L  HG         E  K   L ++L        
Sbjct  238  LADEIKPICRKFMQNPTEHYVDEDTKLTLHGLQQYYIPLEEREKNRKLNELLDEL----Q  293

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
              + IIF ++   A  L   L++                    +  + ++Q ++    ++
Sbjct  294  FNQVIIFVKSTIRATELDKLLRECNFPSI--------------AVHSGVSQEERIRRYKE  339

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARA-DQSVYAFVATE  485
            F++    + VAT V   G+DI   N+ + Y L  +  S +   GRA        A     
Sbjct  340  FKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLAISFVN  399

Query  486  GSRELKRELINEALETLMEQAVAAVQK  512
              ++ +   + + +E   E A+    K
Sbjct  400  SDQDKE---VLQQIEKRFEVALPEFPK  423


 Score = 51.7 bits (122),  Expect = 2e-05, Method: Composition-based stats.
 Identities = 44/268 (16%), Positives = 91/268 (34%), Gaps = 34/268 (13%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG-AKVVVLVNRVHLVTQ---  62
            Q   I  A+ G +II    +G GKT        + +E V G   V+V+ +   L  Q   
Sbjct  77   QQTCIPQAMLGGDIICQAKSGLGKTAVFVLTTLQQVEPVAGECSVLVMCHTRELAFQIRN  136

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHD----LLICTAELLQMALTSPEEEE  118
                F + +    T     G   P      + +  +    +++ T   L  AL     ++
Sbjct  137  EYNRFSKYMPDIKTGVFYGG--TPIQKDAEVLKNKETHPHIIVGTPGRL-NAL---VRDK  190

Query  119  HVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKL  178
            H+ L    + V+DEC            + +      Q+     QV+  +A+         
Sbjct  191  HLRLGNVRMFVLDECDKMLDQIDMRRDVQEIFRATPQQK----QVMMFSAT---------  237

Query  179  DGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMD  238
                + +  +C            +   +L  H  Q  + Y     R ++     L +L+D
Sbjct  238  --LADEIKPICRKFMQNPTEHYVDEDTKLTLHGLQ--QYYIPLEEREKN---RKLNELLD  290

Query  239  QIHDHLEMPELSRKFGTQMYEQQVVKLS  266
            ++  +  +  +         ++ + + +
Sbjct  291  ELQFNQVIIFVKSTIRATELDKLLRECN  318


>sp|Q1EB38|DBP10_COCIM ATP-dependent RNA helicase DBP10 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=DBP10 PE=3 SV=1
Length=927

 Score = 99.5 bits (246),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 55/156 (35%), Gaps = 15/156 (10%)

Query  333  DRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQG  392
            +        A  G  + K +  E+       S      IIF  T+     +   L++   
Sbjct  328  EAGKHAREQAISGKSSKKRKRSEQNNPNPQESPTEHSTIIFVATKHHVDYIASLLRES--  385

Query  393  LQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNV  452
                        G   S     + Q  ++  +  F+ G  N+LV T VA  G+DIP    
Sbjct  386  ------------GFAVSYAYGSLDQTARKIQVSNFRTGISNILVVTDVAARGIDIPILEN  433

Query  453  VVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGS  487
            V+ Y   +     V   GR ARA +  +++     +
Sbjct  434  VINYDFPSQAKIFVHRVGRTARAGRKGWSYSLVRDA  469


 Score = 48.6 bits (114),  Expect = 2e-04, Method: Composition-based stats.
 Identities = 27/125 (22%), Positives = 51/125 (41%), Gaps = 8/125 (6%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRHLE---TVDGAKVVVLVNRVHLVTQHGEEFRRML  71
            L+ ++++    TG+GKT A        L+   T  G++ ++L     L  Q  +  + + 
Sbjct  116  LDDQDVVGMARTGSGKTAAFVIPMIEKLKSHSTKVGSRGLILSPSRELALQTLKVVKELG  175

Query  72   DG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV  130
             G       L G       FG++A   D++I T           + E +++L+    +V 
Sbjct  176  RGTDLKCVLLVGGDSLEEQFGYMAGNPDIIIATPGRFLH----LKVEMNLDLSSIKYVVF  231

Query  131  DECHH  135
            DE   
Sbjct  232  DEADR  236


>sp|Q6FQU5|DHH1_CANGA ATP-dependent RNA helicase DHH1 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DHH1 PE=3 SV=1
Length=507

 Score = 97.9 bits (242),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 59/356 (17%), Positives = 114/356 (32%), Gaps = 22/356 (6%)

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
            SP    A  +      +L    N       +     P L++   +  K   L    +++ 
Sbjct  55   SPIQEEAIPVAITGRDILARAKN---GTGKTAAFVIPTLEKIKPKLNKIQALIMVPTRE-  110

Query  229  FGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN  288
                  +++  +  H  +  +    GT + +  + +L+E   +      RV  L  R+  
Sbjct  111  LALQTSQVIRTLGRHCGVSCMVTTGGTNLRDDIL-RLNETVHVLVGTPGRVLDLASRKVA  169

Query  289  DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPEN  348
            D  L   ++  +D    +     +  + +      +     LF                +
Sbjct  170  D--LSECSLFVMDEADKMLSRDFKTIIEQVLTFLPKAHQSLLFSATFPLTVKEFMVKHLH  227

Query  349  PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI-----RAQLL  403
               E+    L  + +     +   F   RQ  H L     + Q  Q +       R +LL
Sbjct  228  KPYEI---NLMEELTLKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELL  284

Query  404  ------IGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG  457
                  +G         M Q+D+ +V   F+ G +  LV + +   G+DI   NVV+ + 
Sbjct  285  AKKITDLGYSCYYSHARMKQQDRNKVFHDFRQGKVRTLVCSDLLTRGIDIQAVNVVINFD  344

Query  458  LLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQK  512
                  + +   GR  R      A      +       I + L T +    A + K
Sbjct  345  FPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPATIDK  400


 Score = 53.3 bits (126),  Expect = 5e-06, Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 49/131 (37%), Gaps = 10/131 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA---KVVVLVNRVHLVTQH  63
            Q E I  A+ G++I+     G GKT  AA+V     +        + +++V    L  Q 
Sbjct  58   QEEAIPVAITGRDILARAKNGTGKT--AAFVIPTLEKIKPKLNKIQALIMVPTRELALQT  115

Query  64   GEEFRRMLDGRWTVTTL-SGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
             +  R +         + +G    R     L     +L+ T   +          +  +L
Sbjct  116  SQVIRTLGRHCGVSCMVTTGGTNLRDDILRLNETVHVLVGTPGRVLD----LASRKVADL  171

Query  123  TVFSLIVVDEC  133
            +  SL V+DE 
Sbjct  172  SECSLFVMDEA  182


>sp|A5DBI5|DBP5_PICGU ATP-dependent RNA helicase DBP5 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DBP5 PE=3 
SV=1
Length=482

 Score = 97.9 bits (242),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 63/173 (36%), Gaps = 21/173 (12%)

Query  352  EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ  411
            +   ++L   +        IIF +T+ +A+ L   ++ +              G   S  
Sbjct  315  KHKAEVLSELYGLLTIGSSIIFVKTKATANYLYAKMKSE--------------GHACSIL  360

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL------TNEISM  465
             + +   ++ ++I  F++G   +L+ T+V   G+DI   ++VV Y +        +  + 
Sbjct  361  HSDLDNSERDKLIDDFREGRSKVLITTNVLARGIDIASVSMVVNYDIPVDKDDKPDPSTY  420

Query  466  VQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAE  517
            +   GR  R  +   A       +  +      +    +E         D+ E
Sbjct  421  LHRIGRTGRFGRVGVAVSFVHDKKSYEDLEQIRSYFNDIEMTRVPTDDWDEVE  473


>sp|Q9Y7C4|ROK1_CANAL ATP-dependent RNA helicase CHR1 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=CHR1 
PE=3 SV=2
Length=578

 Score = 98.3 bits (243),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 83/437 (19%), Positives = 157/437 (36%), Gaps = 48/437 (11%)

Query  135  HTHKDTVYNVIMSQYLELKLQRAQPLPQVL---GLTASPGTGGASKLDGAINHVLQLCAN  191
            H +K  + N+I ++++E    + + +P  L    L A   TG    L   I  V Q+ + 
Sbjct  137  HINKKVLSNLIDNEFVEPTPIQCESIPITLNNRDLIACAPTGSGKTLAFLIPLVQQILSK  196

Query  192  LDTW------CIMSPQNCCP----QLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIH  241
              +        I+SP N       Q  E   + CKQ N+     Q         +    +
Sbjct  197  NVSKNHGIRGLIISPTNELAVQIFQELEIITRGCKQINVAILSKQLASKLNNNIIKSSKY  256

Query  242  DHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIH-DTVRAV  300
            D +    L       + +Q  + LS+   L   +  +++        D +L H    +  
Sbjct  257  DIIVSTPLRL---IDVVKQGNMDLSKIEQLIIDEADKLFDHGFAEQTDEILTHCTNPKIR  313

Query  301  DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNEL-AHLATHGPENPKLEMLEKILQ  359
             ++ +       E +  + +    R ++   +   N +   L   G E  KL  + +++Q
Sbjct  314  KSIFSATIPSSVEEMAHSIMKDPLRIIIGHKEAASNTIDQKLVFTGNEQGKLLAIRQMIQ  373

Query  360  RQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRD  419
            +       P  IIF ++   A +L                  L             T + 
Sbjct  374  Q---GEFKPPIIIFLQSITRAKAL--------------FHELLYDRLNVDVIHAERTPKQ  416

Query  420  QQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARAD---Q  476
            ++EVI++F++G + +L+ T V   G+D    N+V+ Y +  +  + V   GR        
Sbjct  417  REEVIKRFKNGDIWVLITTDVLARGVDFKGVNLVINYDVPQSAQAYVHRIGRTGRGGKAG  476

Query  477  SVYAFVATEGSRELKREL-------INEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAA  529
                F   E  + +K  L        N+     ME      +K    + Q K  ++Q+  
Sbjct  477  KAVTFFTKEDDKAIKPILNVMKQSGCNDGYSQWMEDMGKLSKK---EKKQIKTHEIQRKK  533

Query  530  LTKRAAQAAQRENQRQQ  546
            ++       Q+  QRQ 
Sbjct  534  ISTVPKVIKQKRKQRQD  550


 Score = 54.8 bits (130),  Expect = 2e-06, Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 57/136 (42%), Gaps = 14/136 (10%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAY--VAKRHLETVDGA----KVVVLVNRVHLV  60
            Q E I   L  +++I   PTG+GKT  A    + ++ L          + +++     L 
Sbjct  158  QCESIPITLNNRDLIACAPTGSGKTL-AFLIPLVQQILSKNVSKNHGIRGLIISPTNELA  216

Query  61   TQHGEEFRRMLDG--RWTVTTLSGDMGPRAGFGHLARC-HDLLICTAELLQMALTSPEEE  117
             Q  +E   +  G  +  V  LS  +  +     +    +D+++ T   L   +    ++
Sbjct  217  VQIFQELEIITRGCKQINVAILSKQLASKLNNNIIKSSKYDIIVSTPLRLIDVV----KQ  272

Query  118  EHVELTVFSLIVVDEC  133
             +++L+    +++DE 
Sbjct  273  GNMDLSKIEQLIIDEA  288


>sp|Q95YF3|CGH1_CAEEL ATP-dependent RNA helicase cgh-1 OS=Caenorhabditis 
elegans OX=6239 GN=cgh-1 PE=1 SV=1
Length=430

 Score = 97.2 bits (240),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 57/360 (16%), Positives = 107/360 (30%), Gaps = 27/360 (8%)

Query  168  ASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQD  227
            A    G        I  + ++   L     M          + SQ   +       +   
Sbjct  85   ARAKNGTGKTGAYCIPVIEKIQPALKAIQAMVIVPTRELALQTSQICVELSKHIQLKVMV  144

Query  228  PFG-DLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR  286
              G   L+  + +++  + +   +      + E+ V K+     L   +  ++ +   + 
Sbjct  145  TTGGTDLRDDIMRLNGTVHLVIATPGRILDLMEKGVAKMEHCKTLVLDEADKLLSQDFQG  204

Query  287  YNDALL-IHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG  345
              D L+      R V   +A         + K      E  +  + +     +       
Sbjct  205  ILDRLINFLPKERQVMLYSATFPNTVTSFMQKHMHKPYE--INLMEELTLLGVTQYYAFV  262

Query  346  PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
             E  K+      L   F      + IIF  + Q    L   + +              IG
Sbjct  263  QEKQKV----HCLNTLFRKLQINQSIIFCNSTQRVELLAKKITE--------------IG  304

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM  465
                   + M Q  +  V   F+ G    LV + +   G+DI   NVV+ +    N  + 
Sbjct  305  YSCYYIHSKMAQNHRNRVFHDFRQGNCRNLVCSDLLTRGIDIQAVNVVINFDFPRNAETY  364

Query  466  VQARGR-ARADQSVYAF-VATEGSRELKRELINEA---LETLMEQAVAAVQKMDQAEYQA  520
            +   GR  R      A  + T   R   R +  E    +E + +     +   DQ    A
Sbjct  365  LHRIGRSGRFGHLGVAINLITYEDRHTLRRIEQELRTRIEPIPKTVDPKLYVADQQLVDA  424


 Score = 40.2 bits (92),  Expect = 0.056, Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 45/126 (36%), Gaps = 14/126 (11%)

Query  14   ALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVV---VLVNRVHLVTQ--HGEE-F  67
            AL G++I+     G GKT   AY      +     K +   V+V    L  Q        
Sbjct  77   ALTGQDILARAKNGTGKT--GAYCIPVIEKIQPALKAIQAMVIVPTRELALQTSQICVEL  134

Query  68   RRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSL  127
             + +  +  VT  +G    R     L     L+I T   +   +    E+   ++     
Sbjct  135  SKHIQLKVMVT--TGGTDLRDDIMRLNGTVHLVIATPGRILDLM----EKGVAKMEHCKT  188

Query  128  IVVDEC  133
            +V+DE 
Sbjct  189  LVLDEA  194


>sp|A1CJT5|IF4A_ASPCL ATP-dependent RNA helicase eIF4A OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / 
NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=tif1 PE=3 SV=1
Length=398

 Score = 96.8 bits (239),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 47/118 (40%), Gaps = 14/118 (12%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K E     L   + +    + +IF  TR+    L   L         D     + G    
Sbjct  247  KEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKL------TARDFTVSAMHG----  296

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
                 M Q  +  ++++F+ G+  +L+AT +   G+D+   ++V+ Y L  N  + + 
Sbjct  297  ----DMEQSQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIH  350


 Score = 56.3 bits (134),  Expect = 5e-07, Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 44/129 (34%), Gaps = 6/129 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q   IMP ++G ++I    +G GKT   +    ++    +   + ++L     L  Q  +
Sbjct  52   QQRAIMPIIKGSDVIAQAQSGTGKTATFSISALQKIDPNLKACQALILAPTRELAQQIQK  111

Query  66   EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
                + D          G    R     L     +++ T   +Q  +        +    
Sbjct  112  VVVAIGDFMSLECHACIGGTNVREDMKALQDGPQVVVGTPGRVQDMIQRRV----LRTDQ  167

Query  125  FSLIVVDEC  133
              L ++DE 
Sbjct  168  MKLFILDEA  176


>sp|Q6BRE4|DBP5_DEBHA ATP-dependent RNA helicase DBP5 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / 
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DBP5 PE=3 SV=1
Length=493

 Score = 97.9 bits (242),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 62/173 (36%), Gaps = 21/173 (12%)

Query  352  EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ  411
                ++L   +        IIF +T+ +A+ L   ++++              G   S  
Sbjct  326  NHKFEVLSELYGLLTIGSSIIFVKTKDTANILYAKMKKE--------------GHKCSIL  371

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL------TNEISM  465
               +   ++  +I  F++G   +L+ T+V   G+DI   ++VV Y L        +  + 
Sbjct  372  HAGLETSERDRLIDDFREGRSKVLITTNVLARGIDIASVSMVVNYDLPVDQKGAPDPSTY  431

Query  466  VQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAE  517
            +   GR  R  +   +       +  +  +   +    +E         D+ E
Sbjct  432  LHRIGRTGRFGRVGVSISFVHDQKSYQDLMAIRSYFGNIEMTRVPTDDWDEVE  484


>sp|Q2UPY3|IF4A_ASPOR ATP-dependent RNA helicase eIF4A OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=tif1 
PE=3 SV=1
Length=421

 Score = 97.2 bits (240),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 38/217 (18%), Positives = 75/217 (35%), Gaps = 27/217 (12%)

Query  251  RKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFY  310
            R   T   +Q ++  ++     G  EQ      L   +  +++       D L     F 
Sbjct  184  RVLKTDHLKQFILDEADEMLSRGFTEQIYDIFQLLPQSTQVVLLSATMPQDVLEVTTKFM  243

Query  311  HREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRG  370
                    +IL  ++ L    +  K     +        K E     L   + +    + 
Sbjct  244  RDP----VRILVKKQELT--LEGIKQFYIAVE-------KEEWKLDTLSDLYETVTITQA  290

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            +IF  TR+    L   L         D     + G         M Q  +  ++++F+ G
Sbjct  291  VIFCNTRRKVDWLTDKL------TARDFTVSAMHG--------DMEQSQRDVIMKEFRSG  336

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
            +  +L+AT +   G+D+   ++V+ Y L  N  + + 
Sbjct  337  SSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIH  373


 Score = 54.4 bits (129),  Expect = 2e-06, Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 44/129 (34%), Gaps = 6/129 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q   I P ++G ++I    +G GKT   +    ++    V G + ++L     L  Q  +
Sbjct  75   QQRAIKPIIKGSDVIAQAQSGTGKTATFSISALQKLDPNVKGCQALILAPTRELAQQIQK  134

Query  66   EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
                + D          G    R     L    ++++ T   +   +        ++   
Sbjct  135  VVVAIGDFMNITCHACIGGTAVREDMKALGEGPEVVVGTPGRVHDMIQRRV----LKTDH  190

Query  125  FSLIVVDEC  133
                ++DE 
Sbjct  191  LKQFILDEA  199


>sp|Q0CXD0|IF4A_ASPTN ATP-dependent RNA helicase eIF4A OS=Aspergillus 
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=tif1 
PE=3 SV=2
Length=396

 Score = 96.8 bits (239),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 47/118 (40%), Gaps = 14/118 (12%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K E     L   + +    + +IF  TR+    L   L         D     + G    
Sbjct  245  KEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKL------TARDFTVSAMHG----  294

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
                 M Q  +  ++++F+ G+  +L+AT +   G+D+   ++V+ Y L  N  + + 
Sbjct  295  ----DMEQSQRDIIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIH  348


 Score = 52.5 bits (124),  Expect = 7e-06, Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 45/129 (35%), Gaps = 6/129 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q   IMP ++G ++I    +G GKT   +    ++    +   + +++     L  Q  +
Sbjct  50   QQRAIMPIIKGNDVIAQAQSGTGKTATFSISALQKIDPNLKACQALIVAPTRELAQQIQK  109

Query  66   EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
                + D          G    R     L     +++ T   +Q  +        ++   
Sbjct  110  VVVAIGDFMNINCHACIGGTAIRDDMKALQEGPPIVVGTPGRIQDMIQRRV----LKTDQ  165

Query  125  FSLIVVDEC  133
              L ++DE 
Sbjct  166  MKLFILDEA  174


>sp|Q7RV88|IF4A_NEUCR ATP-dependent RNA helicase eIF4A OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / 
DSM 1257 / FGSC 987) OX=367110 GN=tif-1 PE=3 SV=2
Length=397

 Score = 96.8 bits (239),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 47/118 (40%), Gaps = 14/118 (12%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K E     L   + +    + +IF  TR+    L   L         D     + G    
Sbjct  246  KEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKL------TARDFTVSAMHG----  295

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
                 M Q  +  ++++F+ G+  +L+AT +   G+D+   ++V+ Y L  N  + + 
Sbjct  296  ----DMDQAQRDLIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIH  349


 Score = 57.5 bits (137),  Expect = 2e-07, Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 46/129 (36%), Gaps = 6/129 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q   IMP ++G ++I    +G GKT   +  V ++   ++   + ++L     L  Q  +
Sbjct  51   QQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQKIDPSLKACQALILAPTRELAQQIQK  110

Query  66   EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
                + D          G    R     L     +++ T   +   +        ++   
Sbjct  111  VVVAIGDFMNIECHACIGGTSVRDDMKALQDGPQVVVGTPGRVHDMIQRR----FLKTDS  166

Query  125  FSLIVVDEC  133
              + V+DE 
Sbjct  167  MKMFVLDEA  175


>sp|A4QVP2|IF4A_PYRO7 ATP-dependent RNA helicase eIF4A OS=Pyricularia 
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 
GN=TIF1 PE=3 SV=1
Length=396

 Score = 96.8 bits (239),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 47/118 (40%), Gaps = 14/118 (12%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K E     L   + +    + +IF  TR+    L   L         D     + G    
Sbjct  245  KEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKL------TARDFTVSAMHG----  294

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
                 M Q  +  ++++F+ G+  +L+AT +   G+D+   ++V+ Y L  N  + + 
Sbjct  295  ----DMDQAQRDLIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIH  348


 Score = 58.3 bits (139),  Expect = 1e-07, Method: Composition-based stats.
 Identities = 23/129 (18%), Positives = 45/129 (35%), Gaps = 6/129 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q   IMP ++G ++I    +G GKT   +  V ++    V   + ++L     L  Q  +
Sbjct  50   QQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQKIDTNVKQCQALILAPTRELAQQIQK  109

Query  66   EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
                + D          G    R     L     +++ T   +   +        ++   
Sbjct  110  VVVAIGDFMNIECHACIGGTSVRDDMKALQDGPQVVVGTPGRVHDMIQRR----FLKTDG  165

Query  125  FSLIVVDEC  133
              + V+DE 
Sbjct  166  MKMFVLDEA  174


>sp|Q6C3X7|DBP5_YARLI ATP-dependent RNA helicase DBP5 OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DBP5 PE=3 
SV=1
Length=488

 Score = 97.6 bits (241),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 32/180 (18%), Positives = 71/180 (39%), Gaps = 24/180 (13%)

Query  352  EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ  411
            E   K+L+  +S       +IF   R +A++L   + +               G   S  
Sbjct  321  EEKFKMLEELYSMLTIASSVIFVAQRSTANALYQRMSKN--------------GHKVSLL  366

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT------NEISM  465
             + ++  ++  ++  F+ G   +L++T+V   G+DI   ++VV Y L T      +  + 
Sbjct  367  HSDLSVDERDRLMDDFRFGRSKVLISTNVIARGIDIATVSMVVNYDLPTDKNGKPDPETY  426

Query  466  VQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD  524
            +   GR  R  +S  +          +   + ++++  +   +  V   D  E +  I+ 
Sbjct  427  LHRIGRTGRFGRSGVSISFVHDEASFE---VLDSIQQSLGMTLTQVPTDDIDEVEEIIKK  483


>sp|Q641Y8|DDX1_RAT ATP-dependent RNA helicase DDX1 OS=Rattus 
norvegicus OX=10116 GN=Ddx1 PE=1 SV=1
Length=740

 Score = 98.7 bits (244),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 32/155 (21%), Positives = 60/155 (39%), Gaps = 12/155 (8%)

Query  342  ATHGPENPKL-EMLEKILQRQF-----SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQT  395
               G  +P++     KIL+ ++           + IIF RT+    +L  +  QQ G   
Sbjct  475  TRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFMQQGGGPD  534

Query  396  VDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVR  455
                    +              ++++ +++F+ G +  L+ T VA  G+DI     V+ 
Sbjct  535  KKGHQFSCV-----CLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVIN  589

Query  456  YGLLTNEISMVQARGR-ARADQSVYAFVATEGSRE  489
              L   + + V   GR  RA++   A       +E
Sbjct  590  VTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624


>sp|Q91VR5|DDX1_MOUSE ATP-dependent RNA helicase DDX1 OS=Mus musculus 
OX=10090 GN=Ddx1 PE=1 SV=1
Length=740

 Score = 98.7 bits (244),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 32/155 (21%), Positives = 60/155 (39%), Gaps = 12/155 (8%)

Query  342  ATHGPENPKL-EMLEKILQRQF-----SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQT  395
               G  +P++     KIL+ ++           + IIF RT+    +L  +  QQ G   
Sbjct  475  TRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFMQQGGGPD  534

Query  396  VDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVR  455
                    +              ++++ +++F+ G +  L+ T VA  G+DI     V+ 
Sbjct  535  KKGHQFSCV-----CLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVIN  589

Query  456  YGLLTNEISMVQARGR-ARADQSVYAFVATEGSRE  489
              L   + + V   GR  RA++   A       +E
Sbjct  590  VTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624


>sp|Q4R7L5|DDX1_MACFA ATP-dependent RNA helicase DDX1 OS=Macaca 
fascicularis OX=9541 GN=DDX1 PE=2 SV=1
Length=740

 Score = 98.7 bits (244),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 32/155 (21%), Positives = 60/155 (39%), Gaps = 12/155 (8%)

Query  342  ATHGPENPKL-EMLEKILQRQF-----SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQT  395
               G  +P++     KIL+ ++           + IIF RT+    +L  +  QQ G   
Sbjct  475  TRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFMQQGGGPD  534

Query  396  VDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVR  455
                    +              ++++ +++F+ G +  L+ T VA  G+DI     V+ 
Sbjct  535  KKGHQFSCV-----CLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVIN  589

Query  456  YGLLTNEISMVQARGR-ARADQSVYAFVATEGSRE  489
              L   + + V   GR  RA++   A       +E
Sbjct  590  VTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624


>sp|Q0IIK5|DDX1_BOVIN ATP-dependent RNA helicase DDX1 OS=Bos taurus 
OX=9913 GN=DDX1 PE=2 SV=1
Length=740

 Score = 98.7 bits (244),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 32/155 (21%), Positives = 60/155 (39%), Gaps = 12/155 (8%)

Query  342  ATHGPENPKL-EMLEKILQRQF-----SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQT  395
               G  +P++     KIL+ ++           + IIF RT+    +L  +  QQ G   
Sbjct  475  TRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFMQQGGGPD  534

Query  396  VDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVR  455
                    +              ++++ +++F+ G +  L+ T VA  G+DI     V+ 
Sbjct  535  KKGHQFSCV-----CLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVIN  589

Query  456  YGLLTNEISMVQARGR-ARADQSVYAFVATEGSRE  489
              L   + + V   GR  RA++   A       +E
Sbjct  590  VTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624


>sp|Q2H0R2|DBP10_CHAGB ATP-dependent RNA helicase DBP10 OS=Chaetomium 
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / 
NBRC 6347 / NRRL 1970) OX=306901 GN=DBP10 PE=3 SV=1
Length=762

 Score = 98.7 bits (244),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 32/125 (26%), Positives = 46/125 (37%), Gaps = 15/125 (12%)

Query  363  SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE  422
                    IIFT T+     +   L+                G   S     + Q  ++ 
Sbjct  358  EKPTEHSTIIFTATKHHVEYIAHLLRHA--------------GFSVSYIYGSLDQTARKI  403

Query  423  VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF  481
             +  F+ G  N+LV T VA  G+DIP    V+ Y         V   GR ARA Q  +A+
Sbjct  404  QVDNFRRGRTNILVVTDVAARGIDIPVLANVINYDFPPQPKIFVHRVGRTARAGQRGWAY  463

Query  482  VATEG  486
               +G
Sbjct  464  ALLQG  468


 Score = 49.0 bits (115),  Expect = 1e-04, Method: Composition-based stats.
 Identities = 26/114 (23%), Positives = 42/114 (37%), Gaps = 8/114 (7%)

Query  26   TGAGKTRAAAYVAKRHLETVD---GAKVVVLVNRVHLVTQHGEEFRRMLDGRWTVT-TLS  81
            TG+GKT A        L+      GA+ +++     L  Q  +  + +  G    T  L 
Sbjct  132  TGSGKTAAFVIPMIERLKAHSARVGARAIIMSPSRELALQTLKVVKELGKGTDLKTVLLV  191

Query  82   GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH  135
            G       FG +A   D++I T           + E  + L+    +V DE   
Sbjct  192  GGDSLEEQFGLMAANPDIIIATPGRFLH----LKVEMSLNLSSVRYVVFDEADR  241


>sp|Q6BP45|ROK1_DEBHA ATP-dependent RNA helicase ROK1 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / 
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=ROK1 PE=3 SV=2
Length=550

 Score = 98.3 bits (243),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 44/302 (15%), Positives = 106/302 (35%), Gaps = 34/302 (11%)

Query  256  QMYEQQVVKLSEAAALAGLQEQRVYAL-HLRRYNDALLIHDTVRAVDALAALQDFYHREH  314
               + + + LS+   L   +  +++    + + ++ L      +   ++ +       E 
Sbjct  251  DSIKNETISLSKVEQLVIDETDKLFDQGFVEQTDEILSNCTNTKLRKSMFSATIPSGVEE  310

Query  315  VTKTQILCAERRLLALFDDRKNELAH-LATHGPENPKLEMLEKILQRQFSSSNSPRGIIF  373
            + ++ +    R ++   +   N +   L   G E  KL  + +++Q+       P  IIF
Sbjct  311  MAQSIMKDPIRVIIGHKEAASNTIEQKLVFTGNEEGKLLAIRQMIQQ---GEFKPPIIIF  367

Query  374  TRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN  433
             ++   A +L                  L             T + + EVI++F+ G + 
Sbjct  368  LQSITRAKAL--------------FHELLYDRLNVDVIHAERTPKQRDEVIKRFKSGDIW  413

Query  434  LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARAD---QSVYAFVATEGSREL  490
            +L+ T V   G+D    N+V+ Y +  +  + V   GR            F   E  + +
Sbjct  414  VLITTDVIARGVDFKGVNLVINYDVPQSAQAYVHRIGRTGRGGKAGKAVTFFTKEDDKAV  473

Query  491  KRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVE  550
            K       +  + +          ++ Y   + D+ + +  ++         ++Q   V 
Sbjct  474  K-----PIINVMKQSGC-------ESGYSGWLEDMHKLSKNEKKDVKKHEIKRKQISTVP  521

Query  551  HV  552
             +
Sbjct  522  KI  523


 Score = 58.3 bits (139),  Expect = 2e-07, Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 55/135 (41%), Gaps = 14/135 (10%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAY--VAKRHLETVDGAKV-----VVLVNRVHL  59
            Q E I  +LEG+++I   PTG+GKT  A    + +  L++    K      +++     L
Sbjct  141  QDEAIPISLEGRDLIACAPTGSGKTL-AFLIPLVQTILQSNPNVKNYGIRGLIISPTNEL  199

Query  60   VTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARC--HDLLICTAELLQMALTSPEEE  117
              Q  +E   M  G+     +            +     +D+L+ T   L  ++ +    
Sbjct  200  AVQIFQELNTMTKGKKMKIGILSKQLANKINNKIINSSKYDILVSTPLRLIDSIKNET--  257

Query  118  EHVELTVFSLIVVDE  132
              + L+    +V+DE
Sbjct  258  --ISLSKVEQLVIDE  270


>sp|Q4WX43|IF4A_ASPFU ATP-dependent RNA helicase eIF4A OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC 
A1100 / Af293) OX=330879 GN=tif1 PE=3 SV=1
Length=406

 Score = 96.8 bits (239),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 47/118 (40%), Gaps = 14/118 (12%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K E     L   + +    + +IF  TR+    L   L         D     + G    
Sbjct  247  KEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKL------TARDFTVSAMHG----  296

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
                 M Q  +  ++++F+ G+  +L+AT +   G+D+   ++V+ Y L  N  + + 
Sbjct  297  ----DMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIH  350


 Score = 56.0 bits (133),  Expect = 6e-07, Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 45/129 (35%), Gaps = 6/129 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q   I+P ++G ++I    +G GKT   +    ++    V G + ++L     L  Q  +
Sbjct  52   QQRAILPIIKGNDVIAQAQSGTGKTATFSISALQKLDPNVKGCQALILAPTRELAQQIQK  111

Query  66   EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
                + D          G    R     L     +++ T   +Q  +        +    
Sbjct  112  VVVAIGDFMNIECHACIGGTNVREDMKALQEGPQVVVGTPGRVQDMIQRRV----LRTDN  167

Query  125  FSLIVVDEC  133
              + ++DE 
Sbjct  168  LKMFILDEA  176


>sp|A3BT52|RH29_ORYSJ DEAD-box ATP-dependent RNA helicase 29 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os08g0416100 PE=2 
SV=2
Length=851

 Score = 99.1 bits (245),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 73/380 (19%), Positives = 123/380 (32%), Gaps = 57/380 (15%)

Query  242  DHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVY-------ALHLRRYNDALLIH  294
                  ++S   G    E Q  +L+E   +      R+         L+LR     +   
Sbjct  143  GKFTDLKISLIVGGDSMESQFEELAENPDIIIATPGRLVHHLAEVEDLNLRTVEYVVFDE  202

Query  295  -DTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELA-----HLATHGPEN  348
             D++ ++  +  L D  H+   T+  +L +     AL D  K  L       L      +
Sbjct  203  ADSLFSLGLIQQLHDILHKLSDTRQTLLFSATLPQALADFAKAGLRDPQIVRLDLDKKIS  262

Query  349  P-------------KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQT  395
            P             KL  L  +++     S+  + IIF  T+     L +  +++     
Sbjct  263  PDLKLAFFTLRQEEKLAALLYLVRE--RISSEEQTIIFVSTKHHVEFLNILFREE-----  315

Query  396  VDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVR  455
                     G   S     M Q  +   I KF+     +L+ T VA  GLDIP  + VV 
Sbjct  316  ---------GLEPSLSYGAMDQEARNIHISKFRARKTMILIVTDVAARGLDIPLLDNVVN  366

Query  456  YGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMD  514
            +         V   GR AR  +S  A+             ++  L   +  A        
Sbjct  367  WDFPAKPKLFVHRVGRVARQGRSGTAYTFVTSEDMAYLLDLHLFLSKPLRPAPTE-----  421

Query  515  QAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQLLCINCMVAVGHGSDLRKVEG  574
                +  ++D++   L    A A   E    +FP   + L+       +   +DL  +E 
Sbjct  422  ----EELLKDMEGMNLKIDRALANG-ETVYGRFPQTIIDLVSDGIKEVINGCTDLIALEK  476

Query  575  THHVNVNPNFSNYYNVSRDP  594
                     F  Y      P
Sbjct  477  P----CTNAFHLYLKTRPMP  492


 Score = 58.7 bits (140),  Expect = 2e-07, Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 81/220 (37%), Gaps = 16/220 (7%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA---KVVVLVNRVHLVTQ---HGEEFR  68
            L G +I     TG+GKT A      + L   D     + ++L     L TQ     ++  
Sbjct  84   LAGHDIAAMARTGSGKTAAFLVPMIQRLRRHDAGAGIRALILSPTRDLATQTLKFAQQLG  143

Query  69   RMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLI  128
            +  D +  ++ + G     + F  LA   D++I T   L   L   E+   + L     +
Sbjct  144  KFTDLK--ISLIVGGDSMESQFEELAENPDIIIATPGRLVHHLAEVED---LNLRTVEYV  198

Query  129  VVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQL  188
            V DE      D+++++ + Q L   L +     Q L  +A+     A      +     +
Sbjct  199  VFDEA-----DSLFSLGLIQQLHDILHKLSDTRQTLLFSATLPQALADFAKAGLRDPQIV  253

Query  189  CANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
              +LD       +     L++  +     Y +  R S + 
Sbjct  254  RLDLDKKISPDLKLAFFTLRQEEKLAALLYLVRERISSEE  293


>sp|Q94BV4|RH6_ARATH DEAD-box ATP-dependent RNA helicase 6 OS=Arabidopsis 
thaliana OX=3702 GN=RH6 PE=2 SV=2
Length=528

 Score = 97.9 bits (242),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 52/376 (14%), Positives = 115/376 (31%), Gaps = 34/376 (9%)

Query  147  SQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG--------AINHVLQLCANLDTWCIM  198
              + +    + + +P  + LT S     A    G         +  +      +    ++
Sbjct  172  KGFEKPSPIQEESIP--IALTGSDILARAKNGTGKTGAFCIPTLEKIDPENNVIQAVILV  229

Query  199  SPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMY  258
              +    Q  +  ++  K   +    +    G  L+  + +++  + +   +      + 
Sbjct  230  PTRELALQTSQVCKELSKYLKIEVMVTTG--GTSLRDDIMRLYQPVHLLVGTPGRILDLA  287

Query  259  EQQVVKLSEAAALAGLQEQRVYALHLRRYNDALL-IHDTVRAVDALAALQDFYHREHVTK  317
            ++ V  L + A L   +  ++ ++  +   + L+      R +   +A      +    K
Sbjct  288  KKGVCVLKDCAMLVMDEADKLLSVEFQPSIEELIQFLPESRQILMFSATFPVTVKSF--K  345

Query  318  TQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTR  377
             + L     +  +       +        E  K+      L   FS     + IIF  + 
Sbjct  346  DRYLKKPYIINLMDQLTLMGVTQYYAFVEERQKV----HCLNTLFSKLQINQSIIFCNSV  401

Query  378  QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA  437
                 L   + +              +G         M Q  +  V   F++G    LV 
Sbjct  402  NRVELLAKKITE--------------LGYSCFYIHAKMVQDHRNRVFHDFRNGACRNLVC  447

Query  438  TSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELIN  496
            T +   G+DI   NVV+ +       S +   GR  R      A          K     
Sbjct  448  TDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKMYQTE  507

Query  497  EALETLMEQAVAAVQK  512
            + L T ++   + + K
Sbjct  508  QELGTEIKPIPSLIDK  523


 Score = 49.4 bits (116),  Expect = 9e-05, Method: Composition-based stats.
 Identities = 30/131 (23%), Positives = 50/131 (38%), Gaps = 10/131 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE  65
            Q E I  AL G +I+     G GKT A        ++  +   + V+LV    L  Q  +
Sbjct  181  QEESIPIALTGSDILARAKNGTGKTGAFCIPTLEKIDPENNVIQAVILVPTRELALQTSQ  240

Query  66   EFR---RMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
              +   + L     VT  +G    R     L +   LL+ T   +        ++    L
Sbjct  241  VCKELSKYLKIEVMVT--TGGTSLRDDIMRLYQPVHLLVGTPGRILD----LAKKGVCVL  294

Query  123  TVFSLIVVDEC  133
               +++V+DE 
Sbjct  295  KDCAMLVMDEA  305


>sp|A1D7N3|IF4A_NEOFI ATP-dependent RNA helicase eIF4A OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / 
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=tif1 
PE=3 SV=1
Length=398

 Score = 96.4 bits (238),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 47/118 (40%), Gaps = 14/118 (12%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K E     L   + +    + +IF  TR+    L   L         D     + G    
Sbjct  247  KEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKL------TARDFTVSAMHG----  296

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
                 M Q  +  ++++F+ G+  +L+AT +   G+D+   ++V+ Y L  N  + + 
Sbjct  297  ----DMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIH  350


 Score = 56.0 bits (133),  Expect = 6e-07, Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 45/129 (35%), Gaps = 6/129 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q   I+P ++G ++I    +G GKT   +    ++    V G + ++L     L  Q  +
Sbjct  52   QQRAILPIIKGNDVIAQAQSGTGKTATFSISALQKLDPNVKGCQALILAPTRELAQQIQK  111

Query  66   EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
                + D          G    R     L     +++ T   +Q  +        +    
Sbjct  112  VVVAIGDFMNIECHACIGGTNVREDMKALQEGPQVVVGTPGRVQDMIQRRV----LRTDN  167

Query  125  FSLIVVDEC  133
              + ++DE 
Sbjct  168  LKMFILDEA  176


>sp|Q5RKI1|IF4A2_RAT Eukaryotic initiation factor 4A-II OS=Rattus 
norvegicus OX=10116 GN=Eif4a2 PE=1 SV=1
Length=407

 Score = 96.8 bits (239),  Expect = 5e-20, Method: Composition-based stats.
 Identities = 33/221 (15%), Positives = 79/221 (36%), Gaps = 28/221 (13%)

Query  248  ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRA-VDALAAL  306
             L+R++ +  + +  V       L+   + ++Y +  +      ++  +     D L   
Sbjct  166  MLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVT  225

Query  307  QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSN  366
            + F         +        +  F                  KL+ L  +    + +  
Sbjct  226  KKFMRDPIRILVKKEELTLEGIKQFYINVEREEW---------KLDTLCDL----YETLT  272

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
              + +IF  TR+    L       + +   D     L G         M Q+++  ++++
Sbjct  273  ITQAVIFLNTRRKVDWLT------EKMHARDFTVSALHG--------DMDQKERDVIMRE  318

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
            F+ G+  +L+ T +   G+D+   ++V+ Y L TN  + + 
Sbjct  319  FRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIH  359


 Score = 50.6 bits (119),  Expect = 3e-05, Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 58/166 (35%), Gaps = 12/166 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLET-VDGAKVVVLVNRVHLVTQHGE  65
            Q   I+P ++G ++I    +G GKT   A    + LE      + +VL     L  Q  +
Sbjct  60   QQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQK  119

Query  66   EFRRMLDGRWTVTTLS-GDMGPRAGFGHL-ARCHDLLICTAELLQMALTSPEEEEHVELT  123
                + D          G    R     L A    +++ T   +   L       ++   
Sbjct  120  VILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRR----YLSPK  175

Query  124  VFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS  169
               + V+DE      D + +      +    Q+     QV+ L+A+
Sbjct  176  WIKMFVLDEA-----DEMLSRGFKDQIYEIFQKLNTSIQVVLLSAT  216


>sp|Q5R4X1|IF4A2_PONAB Eukaryotic initiation factor 4A-II OS=Pongo 
abelii OX=9601 GN=EIF4A2 PE=2 SV=1
Length=407

 Score = 96.8 bits (239),  Expect = 5e-20, Method: Composition-based stats.
 Identities = 33/221 (15%), Positives = 79/221 (36%), Gaps = 28/221 (13%)

Query  248  ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRA-VDALAAL  306
             L+R++ +  + +  V       L+   + ++Y +  +      ++  +     D L   
Sbjct  166  MLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVT  225

Query  307  QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSN  366
            + F         +        +  F                  KL+ L  +    + +  
Sbjct  226  KKFMRDPIRILVKKEELTLEGIKQFYINVEREEW---------KLDTLCDL----YETLT  272

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
              + +IF  TR+    L       + +   D     L G         M Q+++  ++++
Sbjct  273  ITQAVIFLNTRRKVDWLT------EKMHARDFTVSALHG--------DMDQKERDVIMRE  318

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
            F+ G+  +L+ T +   G+D+   ++V+ Y L TN  + + 
Sbjct  319  FRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIH  359


 Score = 50.6 bits (119),  Expect = 3e-05, Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 58/166 (35%), Gaps = 12/166 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLET-VDGAKVVVLVNRVHLVTQHGE  65
            Q   I+P ++G ++I    +G GKT   A    + LE      + +VL     L  Q  +
Sbjct  60   QQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQK  119

Query  66   EFRRMLDGRWTVTTLS-GDMGPRAGFGHL-ARCHDLLICTAELLQMALTSPEEEEHVELT  123
                + D          G    R     L A    +++ T   +   L       ++   
Sbjct  120  VILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRR----YLSPK  175

Query  124  VFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS  169
               + V+DE      D + +      +    Q+     QV+ L+A+
Sbjct  176  WIKMFVLDEA-----DEMLSRGFKDQIYEIFQKLNTSIQVVLLSAT  216


>sp|P10630|IF4A2_MOUSE Eukaryotic initiation factor 4A-II OS=Mus 
musculus OX=10090 GN=Eif4a2 PE=1 SV=2
Length=407

 Score = 96.8 bits (239),  Expect = 5e-20, Method: Composition-based stats.
 Identities = 33/221 (15%), Positives = 79/221 (36%), Gaps = 28/221 (13%)

Query  248  ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRA-VDALAAL  306
             L+R++ +  + +  V       L+   + ++Y +  +      ++  +     D L   
Sbjct  166  MLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVT  225

Query  307  QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSN  366
            + F         +        +  F                  KL+ L  +    + +  
Sbjct  226  KKFMRDPIRILVKKEELTLEGIKQFYINVEREEW---------KLDTLCDL----YETLT  272

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
              + +IF  TR+    L       + +   D     L G         M Q+++  ++++
Sbjct  273  ITQAVIFLNTRRKVDWLT------EKMHARDFTVSALHG--------DMDQKERDVIMRE  318

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
            F+ G+  +L+ T +   G+D+   ++V+ Y L TN  + + 
Sbjct  319  FRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIH  359


 Score = 50.6 bits (119),  Expect = 3e-05, Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 58/166 (35%), Gaps = 12/166 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLET-VDGAKVVVLVNRVHLVTQHGE  65
            Q   I+P ++G ++I    +G GKT   A    + LE      + +VL     L  Q  +
Sbjct  60   QQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQK  119

Query  66   EFRRMLDGRWTVTTLS-GDMGPRAGFGHL-ARCHDLLICTAELLQMALTSPEEEEHVELT  123
                + D          G    R     L A    +++ T   +   L       ++   
Sbjct  120  VILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRR----YLSPK  175

Query  124  VFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS  169
               + V+DE      D + +      +    Q+     QV+ L+A+
Sbjct  176  WIKMFVLDEA-----DEMLSRGFKDQIYEIFQKLNTSIQVVLLSAT  216


>sp|Q14240|IF4A2_HUMAN Eukaryotic initiation factor 4A-II OS=Homo 
sapiens OX=9606 GN=EIF4A2 PE=1 SV=2
Length=407

 Score = 96.8 bits (239),  Expect = 5e-20, Method: Composition-based stats.
 Identities = 33/221 (15%), Positives = 79/221 (36%), Gaps = 28/221 (13%)

Query  248  ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRA-VDALAAL  306
             L+R++ +  + +  V       L+   + ++Y +  +      ++  +     D L   
Sbjct  166  MLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVT  225

Query  307  QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSN  366
            + F         +        +  F                  KL+ L  +    + +  
Sbjct  226  KKFMRDPIRILVKKEELTLEGIKQFYINVEREEW---------KLDTLCDL----YETLT  272

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
              + +IF  TR+    L       + +   D     L G         M Q+++  ++++
Sbjct  273  ITQAVIFLNTRRKVDWLT------EKMHARDFTVSALHG--------DMDQKERDVIMRE  318

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
            F+ G+  +L+ T +   G+D+   ++V+ Y L TN  + + 
Sbjct  319  FRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIH  359


 Score = 50.6 bits (119),  Expect = 3e-05, Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 58/166 (35%), Gaps = 12/166 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLET-VDGAKVVVLVNRVHLVTQHGE  65
            Q   I+P ++G ++I    +G GKT   A    + LE      + +VL     L  Q  +
Sbjct  60   QQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQK  119

Query  66   EFRRMLDGRWTVTTLS-GDMGPRAGFGHL-ARCHDLLICTAELLQMALTSPEEEEHVELT  123
                + D          G    R     L A    +++ T   +   L       ++   
Sbjct  120  VILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRR----YLSPK  175

Query  124  VFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS  169
               + V+DE      D + +      +    Q+     QV+ L+A+
Sbjct  176  WIKMFVLDEA-----DEMLSRGFKDQIYEIFQKLNTSIQVVLLSAT  216


>sp|Q3SZ65|IF4A2_BOVIN Eukaryotic initiation factor 4A-II OS=Bos 
taurus OX=9913 GN=EIF4A2 PE=2 SV=1
Length=407

 Score = 96.8 bits (239),  Expect = 5e-20, Method: Composition-based stats.
 Identities = 33/221 (15%), Positives = 79/221 (36%), Gaps = 28/221 (13%)

Query  248  ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRA-VDALAAL  306
             L+R++ +  + +  V       L+   + ++Y +  +      ++  +     D L   
Sbjct  166  MLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVT  225

Query  307  QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSN  366
            + F         +        +  F                  KL+ L  +    + +  
Sbjct  226  KKFMRDPIRILVKKEELTLEGIKQFYINVEREEW---------KLDTLCDL----YETLT  272

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
              + +IF  TR+    L       + +   D     L G         M Q+++  ++++
Sbjct  273  ITQAVIFLNTRRKVDWLT------EKMHARDFTVSALHG--------DMDQKERDVIMRE  318

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
            F+ G+  +L+ T +   G+D+   ++V+ Y L TN  + + 
Sbjct  319  FRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIH  359


 Score = 50.6 bits (119),  Expect = 3e-05, Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 58/166 (35%), Gaps = 12/166 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLET-VDGAKVVVLVNRVHLVTQHGE  65
            Q   I+P ++G ++I    +G GKT   A    + LE      + +VL     L  Q  +
Sbjct  60   QQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQK  119

Query  66   EFRRMLDGRWTVTTLS-GDMGPRAGFGHL-ARCHDLLICTAELLQMALTSPEEEEHVELT  123
                + D          G    R     L A    +++ T   +   L       ++   
Sbjct  120  VILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRR----YLSPK  175

Query  124  VFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS  169
               + V+DE      D + +      +    Q+     QV+ L+A+
Sbjct  176  WIKMFVLDEA-----DEMLSRGFKDQIYEIFQKLNTSIQVVLLSAT  216


>sp|Q5B948|IF4A_EMENI ATP-dependent RNA helicase eIF4A OS=Emericella 
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / 
NRRL 194 / M139) OX=227321 GN=tif1 PE=3 SV=2
Length=398

 Score = 96.4 bits (238),  Expect = 5e-20, Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 47/118 (40%), Gaps = 14/118 (12%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K E     L   + +    + +IF  TR+    L   L         D     + G    
Sbjct  247  KEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKL------TARDFTVSAMHG----  296

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
                 M Q  +  ++++F+ G+  +L+AT +   G+D+   ++V+ Y L  N  + + 
Sbjct  297  ----DMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIH  350


 Score = 51.7 bits (122),  Expect = 1e-05, Method: Composition-based stats.
 Identities = 19/129 (15%), Positives = 44/129 (34%), Gaps = 6/129 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q   I+P ++G ++I    +G GKT   +    ++    V   + +++     L  Q  +
Sbjct  52   QQRAILPIVKGNDVIAQAQSGTGKTATFSISALQKLDPNVKACQALIVAPTRELAQQIQK  111

Query  66   EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
                + D          G    R     L     +++ T   +   +        ++   
Sbjct  112  VVIAIGDFMNIQCHACIGGTAVRDDMNALREGPQIVVGTPGRIHDMIQRRV----LKTDQ  167

Query  125  FSLIVVDEC  133
              + ++DE 
Sbjct  168  MKMFILDEA  176


>sp|Q4WWD3|DHH1_ASPFU ATP-dependent RNA helicase dhh1 OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 
/ Af293) OX=330879 GN=dhh1 PE=3 SV=1
Length=507

 Score = 97.6 bits (241),  Expect = 5e-20, Method: Composition-based stats.
 Identities = 52/313 (17%), Positives = 99/313 (32%), Gaps = 31/313 (10%)

Query  234  KKLMDQI---HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDA  290
              LMD I   +D + +   +      +  + V  LSE       +  ++ +       + 
Sbjct  153  TGLMDDIIRLNDAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQ  212

Query  291  LL-IHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENP  349
            LL  H   R V   +A      +    K + +     +  + +     +        E  
Sbjct  213  LLSFHPKDRQVMLFSATFPLIVKSF--KDKHMRNPYEINLMDELTLRGITQYYAFVEEKQ  270

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+      L   FS     + IIF  +      L   + +              +G    
Sbjct  271  KV----HCLNTLFSKLQINQSIIFCNSTNRVELLAKKITE--------------LGYSCF  312

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 M Q+ +  V   F++G    LV + +   G+DI   NVV+ +    N  + +   
Sbjct  313  YSHARMLQQHRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRI  372

Query  470  GR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQA  528
            GR  R      A           R  + +  + L  +     Q +D+  Y   + D  + 
Sbjct  373  GRSGRFGHLGLAINLINWD---DRFNLYKIEQELGTEIQPIPQNIDKKLY---VYDSPET  426

Query  529  ALTKRAAQAAQRE  541
                 +  + QR+
Sbjct  427  IPRPISNPSQQRQ  439


 Score = 50.6 bits (119),  Expect = 4e-05, Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 47/131 (36%), Gaps = 10/131 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA---KVVVLVNRVHLVTQH  63
            Q E I  AL G++I+     G GKT  AA+V          +   + ++LV    L  Q 
Sbjct  74   QEETIPVALTGRDILARAKNGTGKT--AAFVIPTLERINPKSTKTQALILVPTRELALQT  131

Query  64   GEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
             +  + +       V   +G  G       L     +L+ T   +         +   +L
Sbjct  132  SQVCKTLGKHLGINVMVTTGGTGLMDDIIRLNDAVHILVGTPGRVLD----LASKGVADL  187

Query  123  TVFSLIVVDEC  133
            +     V+DE 
Sbjct  188  SECPTFVMDEA  198


>sp|A2YV85|RH29_ORYSI DEAD-box ATP-dependent RNA helicase 29 OS=Oryza 
sativa subsp. indica OX=39946 GN=OsI_028228 PE=2 SV=2
Length=851

 Score = 98.7 bits (244),  Expect = 5e-20, Method: Composition-based stats.
 Identities = 57/269 (21%), Positives = 93/269 (35%), Gaps = 43/269 (16%)

Query  242  DHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVY-------ALHLRRYNDALLIH  294
                  ++S   G    E Q  +L+E   +      R+         L+LR     +   
Sbjct  143  GKFTDLKISLIVGGDSMESQFEELAENPDIIIATPGRLVHHLAEVEDLNLRTVEYVVFDE  202

Query  295  -DTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELA-----HLATHGPEN  348
             D++ ++  +  L D  H+   T+  +L +     AL D  K  L       L      +
Sbjct  203  ADSLFSLGLIQQLHDILHKLSDTRQTLLFSATLPQALADFAKAGLRDPQIVRLDLDKKIS  262

Query  349  P-------------KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQT  395
            P             KL  L  +++     S+  + IIF  T+     L +  +++     
Sbjct  263  PDLKLAFFTLRQEEKLAALLYLVRE--RISSEEQTIIFVSTKHHVEFLNILFREE-----  315

Query  396  VDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVR  455
                     G   S     M Q  +   I KF+     +L+ T VA  GLDIP  + VV 
Sbjct  316  ---------GLEPSLSYGAMDQEARNIHISKFRARKTMILIVTDVAARGLDIPLLDNVVN  366

Query  456  YGLLTNEISMVQARGR-ARADQSVYAFVA  483
            +         V   GR AR  +S  A+  
Sbjct  367  WDFPAKPKLFVHRVGRVARQGRSGTAYTF  395


 Score = 58.7 bits (140),  Expect = 1e-07, Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 81/220 (37%), Gaps = 16/220 (7%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA---KVVVLVNRVHLVTQ---HGEEFR  68
            L G +I     TG+GKT A      + L   D     + ++L     L TQ     ++  
Sbjct  84   LAGHDIAAMARTGSGKTAAFLVPMIQRLRRHDAGAGIRALILSPTRDLATQTLKFAQQLG  143

Query  69   RMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLI  128
            +  D +  ++ + G     + F  LA   D++I T   L   L   E+   + L     +
Sbjct  144  KFTDLK--ISLIVGGDSMESQFEELAENPDIIIATPGRLVHHLAEVED---LNLRTVEYV  198

Query  129  VVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQL  188
            V DE      D+++++ + Q L   L +     Q L  +A+     A      +     +
Sbjct  199  VFDEA-----DSLFSLGLIQQLHDILHKLSDTRQTLLFSATLPQALADFAKAGLRDPQIV  253

Query  189  CANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
              +LD       +     L++  +     Y +  R S + 
Sbjct  254  RLDLDKKISPDLKLAFFTLRQEEKLAALLYLVRERISSEE  293


>sp|O49289|RH29_ARATH Putative DEAD-box ATP-dependent RNA helicase 
29 OS=Arabidopsis thaliana OX=3702 GN=RH29 PE=3 SV=1
Length=845

 Score = 98.7 bits (244),  Expect = 5e-20, Method: Composition-based stats.
 Identities = 64/420 (15%), Positives = 133/420 (32%), Gaps = 64/420 (15%)

Query  204  CPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVV  263
              +L++H   P                +   K   ++        +S   G    E Q  
Sbjct  87   LEKLKQHV--PQGGVRALILSPTRDLAEQTLKFTKEL-GKFTDLRVSLLVGGDSMEDQFE  143

Query  264  KLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRA-VDALAALQDFYHREHVTKTQILC  322
            +L++   +      R+  +HL    D + +        D   +L      E + +     
Sbjct  144  ELTKGPDVIIATPGRL--MHLLSEVDDMTLRTVEYVVFDEADSLFGMGFAEQLHQILTQL  201

Query  323  AERRLLALFDD--------------RKNELAHLATHGPENP-------------KLEMLE  355
            +E R   LF                R+ +L  L      +P             K   L 
Sbjct  202  SENRQTLLFSATLPSALAEFAKAGLREPQLVRLDVENKISPDLKLSFLTVRPEEKYSALL  261

Query  356  KILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHM  415
             +++     S+  + +IF  T+     +          +  +I   +  G         M
Sbjct  262  YLVREHI--SSDQQTLIFVSTKHHVEFVNSL------FKLENIEPSVCYG--------DM  305

Query  416  TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA  474
             Q  ++  + +F+     LL+ T +A  G+DIP  + V+ +         V   GR ARA
Sbjct  306  DQDARKIHVSRFRARKTMLLIVTDIAARGIDIPLLDNVINWDFPPRPKIFVHRVGRAARA  365

Query  475  DQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRA  534
             ++  A+            +  E +  +++  +   + +  A  + ++    +  +TK +
Sbjct  366  GRTGCAYSF----------VTPEDMPYMLDLHLFLSKPVRPAPTEDEVLKNMEEVMTKTS  415

Query  535  AQAAQRENQRQQFPVEHVQLLCINCMVAVGHGSDLRKVEGTHHVNVNPNFSNYYNVSRDP  594
                       +FP + + L+       +   ++L  +E T        F  Y      P
Sbjct  416  QAIDSGVTVYGRFPQKTIDLIFNRTREMIDSSAELDSLERTS----TKAFRLYSKTKPSP  471


 Score = 54.0 bits (128),  Expect = 4e-06, Method: Composition-based stats.
 Identities = 30/126 (24%), Positives = 51/126 (40%), Gaps = 13/126 (10%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYV-AKRHLET---VDGAKVVVLVNRVHLVTQ---HGEEF  67
            L G +++    TG+GKT AA  +     L+      G + ++L     L  Q     +E 
Sbjct  63   LSGVDVVAMARTGSGKT-AAFLIPMLEKLKQHVPQGGVRALILSPTRDLAEQTLKFTKEL  121

Query  68   RRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSL  127
             +  D R ++  L G       F  L +  D++I T   L   L+  ++   + L     
Sbjct  122  GKFTDLRVSL--LVGGDSMEDQFEELTKGPDVIIATPGRLMHLLSEVDD---MTLRTVEY  176

Query  128  IVVDEC  133
            +V DE 
Sbjct  177  VVFDEA  182


>sp|Q5BFU7|DBP10_EMENI ATP-dependent RNA helicase dbp10 OS=Emericella 
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / 
NRRL 194 / M139) OX=227321 GN=dbp10 PE=3 SV=1
Length=936

 Score = 98.7 bits (244),  Expect = 5e-20, Method: Composition-based stats.
 Identities = 35/153 (23%), Positives = 57/153 (37%), Gaps = 19/153 (12%)

Query  340  HLATHGPENPKLEMLEKILQR----QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQT  395
             L   GPE+ K +  ++           S      I+F  T+     L   L++      
Sbjct  342  RLKEKGPEDSKNKKRKRAEMERAVNMKESPTKHSTIVFAATKHHVDYLYSLLREA-----  396

Query  396  VDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVR  455
                     G   S     + Q  ++  +Q F+ G  N+LV T VA  G+DIP    V+ 
Sbjct  397  ---------GFAVSYVYGSLDQTARKIQVQNFRTGISNILVVTDVAARGIDIPILANVIN  447

Query  456  YGLLTNEISMVQARGR-ARADQSVYAFVATEGS  487
            Y   +     V   GR ARA +  +++     +
Sbjct  448  YDFPSQPKIFVHRVGRTARAGRKGWSYSLVRDA  480


 Score = 49.4 bits (116),  Expect = 1e-04, Method: Composition-based stats.
 Identities = 27/125 (22%), Positives = 50/125 (40%), Gaps = 8/125 (6%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVD---GAKVVVLVNRVHLVTQHGEEFRRML  71
            +E ++++    TG+GKT A        L++     GA+ ++L     L  Q  +  + + 
Sbjct  126  MEDQDVVGMARTGSGKTAAFVIPMIEKLKSHSTKFGARGLILSPSRELALQTLKVVKELG  185

Query  72   DG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV  130
             G       L G       FG +A   D++I T           + E +++L+    +V 
Sbjct  186  KGTDLKSVLLVGGDSLEEQFGMMAGNPDIVIATPGRFLH----LKVEMNLDLSSIKYVVF  241

Query  131  DECHH  135
            DE   
Sbjct  242  DEADR  246


>sp|A3GH91|DBP5_PICST ATP-dependent RNA helicase DBP5 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=DBP5 PE=3 SV=2
Length=500

 Score = 97.6 bits (241),  Expect = 5e-20, Method: Composition-based stats.
 Identities = 33/188 (18%), Positives = 69/188 (37%), Gaps = 27/188 (14%)

Query  345  GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI  404
              E  K E+L ++    +        IIF   + +A+ L   ++ +              
Sbjct  330  DSEKHKFEVLCEL----YGLLTIGSSIIFVERKDTANLLYAKMKAE--------------  371

Query  405  GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT----  460
            G   S     +   ++  +I  F++G   +L+ T+V   G+DI   ++VV Y L T    
Sbjct  372  GHACSILHGGLETSERDRLIDDFREGRSKVLITTNVLARGIDIASVSMVVNYDLPTDKDG  431

Query  461  --NEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAE  517
              +  + +   GR  R  +   +       R    E++ +  +      +  V   D  E
Sbjct  432  NADPSTYLHRIGRTGRFGRVGVSISFIYDKRSY--EILMKIKDYFGNVEMTRVPTDDWDE  489

Query  518  YQAKIRDL  525
             +  ++ +
Sbjct  490  VEKIVKKV  497


>sp|Q4HZ42|DBP10_GIBZE ATP-dependent RNA helicase DBP10 OS=Gibberella 
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 
/ NRRL 31084 / PH-1) OX=229533 GN=DBP10 PE=3 SV=1
Length=897

 Score = 98.7 bits (244),  Expect = 5e-20, Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 45/125 (36%), Gaps = 15/125 (12%)

Query  363  SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE  422
                    IIFT T+     L   L              +  G   S     + Q  ++ 
Sbjct  351  GKPTEHSTIIFTATKHHVEYLANLL--------------IYAGFAVSYVYGSLDQTARRI  396

Query  423  VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF  481
             ++ F+ G  N+LV T VA  G+DIP    V+ +         V   GR ARA Q  +++
Sbjct  397  QVEDFRMGKTNILVVTDVAARGIDIPVLANVINFDFPPQPKVFVHRVGRTARAGQRGWSY  456

Query  482  VATEG  486
                 
Sbjct  457  SLVRD  461


 Score = 49.0 bits (115),  Expect = 1e-04, Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 40/114 (35%), Gaps = 8/114 (7%)

Query  26   TGAGKTRAAAYVAKRHLETVD---GAKVVVLVNRVHLVTQHGEEFRRMLDG-RWTVTTLS  81
            TG+GKT A        L       G + +++     L  Q  +  +    G       L 
Sbjct  128  TGSGKTAAFVIPMIEKLRAHSARFGTRALIMSPSRELAIQTLKVVKEFSRGTDLKCVLLV  187

Query  82   GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH  135
            G       FG++A   D++I T           + E  ++L+    +V DE   
Sbjct  188  GGDSLEEQFGYMAANPDIVIATPGRFLH----LKVEMSLDLSSIKYVVFDEADR  237


>sp|A7ESL7|DBP10_SCLS1 ATP-dependent RNA helicase dbp10 OS=Sclerotinia 
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 
GN=dbp10 PE=3 SV=2
Length=920

 Score = 98.7 bits (244),  Expect = 5e-20, Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 44/124 (35%), Gaps = 15/124 (12%)

Query  364  SSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEV  423
                   IIF  T+     L   L+              + G   S     + Q  +   
Sbjct  360  KPTEHSTIIFAATKHHVDYLASLLR--------------MSGFAVSHAYGSLDQTARNIQ  405

Query  424  IQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFV  482
            ++ F+ G  N+LV T VA  G+DIP    V+ Y         V   GR ARA Q  +++ 
Sbjct  406  VEDFRTGKSNILVVTDVAARGIDIPVLANVINYDFPPQPKVFVHRVGRTARAGQRGWSYS  465

Query  483  ATEG  486
                
Sbjct  466  LVRD  469


 Score = 49.8 bits (117),  Expect = 8e-05, Method: Composition-based stats.
 Identities = 26/125 (21%), Positives = 46/125 (37%), Gaps = 8/125 (6%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVD---GAKVVVLVNRVHLVTQHGEEFRRML  71
            L+ ++++    TG+GKT A        L       GA+ +++     L  Q  +  +   
Sbjct  123  LDNQDVVGMARTGSGKTAAFVIPMIEKLRAHSVRVGARALIMSPSRELALQTLKVVKEFG  182

Query  72   DG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV  130
             G       L G       FG +A   D++I T           + E  ++L+    +V 
Sbjct  183  RGTDLKCVLLVGGDSLEEQFGFMAANPDIVIATPGRFLH----LKVEMSLDLSSMKYVVF  238

Query  131  DECHH  135
            DE   
Sbjct  239  DEADR  243


>sp|Q8JFP1|IF4A2_CHICK Eukaryotic initiation factor 4A-II OS=Gallus 
gallus OX=9031 GN=EIF4A2 PE=2 SV=1
Length=407

 Score = 96.4 bits (238),  Expect = 5e-20, Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 84/220 (38%), Gaps = 26/220 (12%)

Query  248  ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQ  307
             L+R++ +  + +  V       L+   + ++Y +  +   +  ++  +      +  + 
Sbjct  166  MLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLSTNIQVVLLSATMPMDVLEVT  225

Query  308  DFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNS  367
              + RE +    ++  E   L         +           KL+ L  +    + +   
Sbjct  226  KKFMREPIR--ILVKKEELTLEGIKQFYINVEREEW------KLDTLCDL----YETLTI  273

Query  368  PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF  427
             + +IF  TR+    L       + +   D     L G         M Q+++  ++++F
Sbjct  274  TQAVIFLNTRRKVDWLT------EKMHARDFTVSALHG--------DMDQKERDVIMREF  319

Query  428  QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
            + G+  +L+ T +   G+D+   ++V+ Y L TN  + + 
Sbjct  320  RSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIH  359


 Score = 49.0 bits (115),  Expect = 9e-05, Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 58/166 (35%), Gaps = 12/166 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETV-DGAKVVVLVNRVHLVTQHGE  65
            Q   I+P ++G ++I    +G GKT   A    + LE      + +VL     L  Q  +
Sbjct  60   QQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIDLKETQALVLAPTRELAQQIQK  119

Query  66   EFRRMLDGRWTVTTLS-GDMGPRAGFGHL-ARCHDLLICTAELLQMALTSPEEEEHVELT  123
                + D          G    R     L A    +++ T   +   L       ++   
Sbjct  120  VILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRR----YLSPK  175

Query  124  VFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS  169
               + V+DE      D + +      +    Q+     QV+ L+A+
Sbjct  176  WIKMFVLDEA-----DEMLSRGFKDQIYEIFQKLSTNIQVVLLSAT  216


>sp|Q5NVJ8|DDX1_PONAB ATP-dependent RNA helicase DDX1 OS=Pongo 
abelii OX=9601 GN=DDX1 PE=2 SV=1
Length=740

 Score = 98.3 bits (243),  Expect = 5e-20, Method: Composition-based stats.
 Identities = 32/155 (21%), Positives = 60/155 (39%), Gaps = 12/155 (8%)

Query  342  ATHGPENPKL-EMLEKILQRQF-----SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQT  395
               G  +P++     KIL+ ++           + IIF RT+    +L  +  QQ G   
Sbjct  475  TRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPD  534

Query  396  VDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVR  455
                    +              ++++ +++F+ G +  L+ T VA  G+DI     V+ 
Sbjct  535  KKGHQFSCV-----CLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVIN  589

Query  456  YGLLTNEISMVQARGR-ARADQSVYAFVATEGSRE  489
              L   + + V   GR  RA++   A       +E
Sbjct  590  VTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624


>sp|Q92499|DDX1_HUMAN ATP-dependent RNA helicase DDX1 OS=Homo 
sapiens OX=9606 GN=DDX1 PE=1 SV=2
Length=740

 Score = 98.3 bits (243),  Expect = 5e-20, Method: Composition-based stats.
 Identities = 32/155 (21%), Positives = 60/155 (39%), Gaps = 12/155 (8%)

Query  342  ATHGPENPKL-EMLEKILQRQF-----SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQT  395
               G  +P++     KIL+ ++           + IIF RT+    +L  +  QQ G   
Sbjct  475  TRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPD  534

Query  396  VDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVR  455
                    +              ++++ +++F+ G +  L+ T VA  G+DI     V+ 
Sbjct  535  KKGHQFSCV-----CLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVIN  589

Query  456  YGLLTNEISMVQARGR-ARADQSVYAFVATEGSRE  489
              L   + + V   GR  RA++   A       +E
Sbjct  590  VTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624


>sp|A1D8G1|DHH1_NEOFI ATP-dependent RNA helicase dhh1 OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / 
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dhh1 
PE=3 SV=1
Length=507

 Score = 97.6 bits (241),  Expect = 6e-20, Method: Composition-based stats.
 Identities = 48/285 (17%), Positives = 88/285 (31%), Gaps = 25/285 (9%)

Query  234  KKLMDQI---HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDA  290
              LMD I   +D + +   +      +  + V  LSE       +  ++ +       + 
Sbjct  153  TGLMDDIIRLNDAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQ  212

Query  291  LL-IHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENP  349
            LL  H   R V   +A      +    K + +     +  + +     +        E  
Sbjct  213  LLSFHPKDRQVMLFSATFPLIVKSF--KDKHMRNPYEINLMDELTLRGITQYYAFVEEKQ  270

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+      L   FS     + IIF  +      L   + +              +G    
Sbjct  271  KV----HCLNTLFSKLQINQSIIFCNSTNRVELLAKKITE--------------LGYSCF  312

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 M Q+ +  V   F++G    LV + +   G+DI   NVV+ +    N  + +   
Sbjct  313  YSHARMLQQHRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRI  372

Query  470  GR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM  513
            GR  R      A              I + L T ++     + K 
Sbjct  373  GRSGRFGHLGLAINLINWDDRFNLYKIEQELGTEIQPIPQNIDKK  417


 Score = 50.6 bits (119),  Expect = 4e-05, Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 47/131 (36%), Gaps = 10/131 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA---KVVVLVNRVHLVTQH  63
            Q E I  AL G++I+     G GKT  AA+V          +   + ++LV    L  Q 
Sbjct  74   QEETIPVALTGRDILARAKNGTGKT--AAFVIPTLERINPKSTKTQALILVPTRELALQT  131

Query  64   GEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
             +  + +       V   +G  G       L     +L+ T   +         +   +L
Sbjct  132  SQVCKTLGKHLGINVMVTTGGTGLMDDIIRLNDAVHILVGTPGRVLD----LASKGVADL  187

Query  123  TVFSLIVVDEC  133
            +     V+DE 
Sbjct  188  SECPTFVMDEA  198


>sp|P10081|IF4A_YEAST ATP-dependent RNA helicase eIF4A OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 
GN=TIF1 PE=1 SV=3
Length=395

 Score = 96.0 bits (237),  Expect = 6e-20, Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 78/217 (36%), Gaps = 27/217 (12%)

Query  251  RKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFY  310
            R+F T   +  ++  ++    +G +EQ      L      +++       D L     F 
Sbjct  157  RRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFM  216

Query  311  HREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRG  370
                    +        +  F     E              E   + L   + S +  + 
Sbjct  217  RNPVRILVKKDELTLEGIKQFYVNVEEE-------------EYKYECLTDLYDSISVTQA  263

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            +IF  TR+    L   L+  +                 S+  + + Q+++  ++++F+ G
Sbjct  264  VIFCNTRRKVEELTTKLRNDK--------------FTVSAIYSDLPQQERDTIMKEFRSG  309

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
            +  +L++T +   G+D+   ++V+ Y L  N+ + + 
Sbjct  310  SSRILISTDLLARGIDVQQVSLVINYDLPANKENYIH  346


 Score = 47.5 bits (111),  Expect = 3e-04, Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 41/130 (32%), Gaps = 9/130 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT---RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQH  63
            Q   IMP +EG +++    +G GKT     AA   +R   +V   + ++L     L  Q 
Sbjct  49   QQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAAL--QRIDTSVKAPQALMLAPTRELALQI  106

Query  64   GEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELT  123
             +    +                        R   +++ T   +   +            
Sbjct  107  QKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRR----FRTD  162

Query  124  VFSLIVVDEC  133
               + ++DE 
Sbjct  163  KIKMFILDEA  172


>sp|A6ZQJ1|IF4A_YEAS7 ATP-dependent RNA helicase eIF4A OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=TIF1 PE=3 
SV=1
Length=395

 Score = 96.0 bits (237),  Expect = 6e-20, Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 78/217 (36%), Gaps = 27/217 (12%)

Query  251  RKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFY  310
            R+F T   +  ++  ++    +G +EQ      L      +++       D L     F 
Sbjct  157  RRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFM  216

Query  311  HREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRG  370
                    +        +  F     E              E   + L   + S +  + 
Sbjct  217  RNPVRILVKKDELTLEGIKQFYVNVEEE-------------EYKYECLTDLYDSISVTQA  263

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            +IF  TR+    L   L+  +                 S+  + + Q+++  ++++F+ G
Sbjct  264  VIFCNTRRKVEELTTKLRNDK--------------FTVSAIYSDLPQQERDTIMKEFRSG  309

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
            +  +L++T +   G+D+   ++V+ Y L  N+ + + 
Sbjct  310  SSRILISTDLLARGIDVQQVSLVINYDLPANKENYIH  346


 Score = 47.5 bits (111),  Expect = 3e-04, Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 41/130 (32%), Gaps = 9/130 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT---RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQH  63
            Q   IMP +EG +++    +G GKT     AA   +R   +V   + ++L     L  Q 
Sbjct  49   QQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAAL--QRIDTSVKAPQALMLAPTRELALQI  106

Query  64   GEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELT  123
             +    +                        R   +++ T   +   +            
Sbjct  107  QKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRR----FRTD  162

Query  124  VFSLIVVDEC  133
               + ++DE 
Sbjct  163  KIKMFILDEA  172


>sp|A1CJ18|DHH1_ASPCL ATP-dependent RNA helicase dhh1 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=dhh1 PE=3 SV=1
Length=503

 Score = 97.2 bits (240),  Expect = 6e-20, Method: Composition-based stats.
 Identities = 54/321 (17%), Positives = 99/321 (31%), Gaps = 29/321 (9%)

Query  234  KKLMDQI---HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDA  290
              LMD I   +D + +   +      +  + V  LSE       +  ++ +       + 
Sbjct  153  TGLMDDIIRLNDAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQ  212

Query  291  LL-IHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENP  349
            LL  H   R V   +A      +    K + +     +  + +     +        E  
Sbjct  213  LLSFHPKDRQVMLFSATFPLIVKSF--KDKHMRNPYEINLMDELTLRGITQYYAFVEEKQ  270

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+      L   FS     + IIF  +      L   + +              +G    
Sbjct  271  KV----HCLNTLFSKLQINQSIIFCNSTNRVELLAKKITE--------------LGYSCF  312

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 M Q+ +  V   F++G    LV + +   G+DI   NVV+ +    N  + +   
Sbjct  313  YSHARMLQQHRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRI  372

Query  470  GR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKI---RDL  525
            GR  R      A              I + L T + Q +          Y +     R +
Sbjct  373  GRSGRFGHLGLAINLINWEDRFNLYKIEQELGTEI-QPIPQNIDKKLYVYDSPETIPRPI  431

Query  526  QQAALTKRAAQAAQRENQRQQ  546
                  ++A Q+   E + Q 
Sbjct  432  SNPPQLRQATQSVTAERRHQN  452


 Score = 50.2 bits (118),  Expect = 5e-05, Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 47/131 (36%), Gaps = 10/131 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA---KVVVLVNRVHLVTQH  63
            Q E I  AL G++I+     G GKT  AA+V          +   + ++LV    L  Q 
Sbjct  74   QEETIPVALTGRDILARAKNGTGKT--AAFVIPTLERINPKSTKTQALILVPTRELALQT  131

Query  64   GEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
             +  + +       V   +G  G       L     +L+ T   +         +   +L
Sbjct  132  SQVCKTLGKHLGINVMVTTGGTGLMDDIIRLNDAVHILVGTPGRVLD----LASKGVADL  187

Query  123  TVFSLIVVDEC  133
            +     V+DE 
Sbjct  188  SECPTFVMDEA  198


>sp|Q4HW67|DHH1_GIBZE ATP-dependent RNA helicase DHH1 OS=Gibberella 
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / 
NRRL 31084 / PH-1) OX=229533 GN=DHH1 PE=3 SV=2
Length=522

 Score = 97.6 bits (241),  Expect = 6e-20, Method: Composition-based stats.
 Identities = 50/286 (17%), Positives = 89/286 (31%), Gaps = 26/286 (9%)

Query  229  FGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN  288
              D + +L D +H  +  P            + V  LSE       +  ++ ++      
Sbjct  157  LRDDIIRLQDPVHIVVGTPGRILDLAG----KNVADLSECPMFIMDEADKLLSIEFTPVI  212

Query  289  DALL-IHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPE  347
            + LL  H   R V   +A      ++   K  +   E  +  + +     +        E
Sbjct  213  EQLLQFHPKDRQVMLFSATFPLSVKDFSDKNMVSPYE--INLMDELTLRGITQYYAFVEE  270

Query  348  NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG  407
              K+      L   FS     + IIF  +      L   + +              +G  
Sbjct  271  KQKV----HCLNTLFSKLQINQSIIFCNSTNRVELLAKKITE--------------LGYS  312

Query  408  NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
                   M Q  +  V   F++G    LV + +   G+DI   NVV+ +    N  + + 
Sbjct  313  CFYSHAKMQQHARNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLH  372

Query  468  ARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQK  512
              GR  R      A              I   L T ++   A++ K
Sbjct  373  RIGRSGRYGHLGLAINLINWDDRFNLYNIERDLGTEIQPIPASIDK  418


 Score = 52.9 bits (125),  Expect = 7e-06, Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 50/131 (38%), Gaps = 10/131 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG-AKV--VVLVNRVHLVTQH  63
            Q E I  AL G++I+     G GKT  AA+V           +K+  ++LV    L  Q 
Sbjct  76   QEESIPVALTGRDILARAKNGTGKT--AAFVIPTLERINPKISKIQCLILVPTRELAMQT  133

Query  64   GEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
             +  + +       V   +G  G R     L     +++ T   +         +   +L
Sbjct  134  SQVCKTLGKHLGINVMVTTGGTGLRDDIIRLQDPVHIVVGTPGRILD----LAGKNVADL  189

Query  123  TVFSLIVVDEC  133
            +   + ++DE 
Sbjct  190  SECPMFIMDEA  200


>sp|A3GHW9|ROK1_PICST ATP-dependent RNA helicase ROK1 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=ROK1 PE=3 SV=1
Length=558

 Score = 97.6 bits (241),  Expect = 6e-20, Method: Composition-based stats.
 Identities = 43/232 (19%), Positives = 81/232 (35%), Gaps = 32/232 (14%)

Query  339  AHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI  398
              L   G E  KL  + +++Q        P  IIF ++   A +L               
Sbjct  343  QKLVFTGSEEGKLLAIRQMIQE---GEFKPPIIIFLQSIHRAKAL--------------F  385

Query  399  RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL  458
               L             T + ++EVI++F++G + +L+ T V   G+D    N+V+ Y +
Sbjct  386  HELLYDKLNVDVIHAERTPKQREEVIKRFKNGDIWVLITTDVLARGVDFKGVNMVINYDV  445

Query  459  LTNEISMVQARGRARADQSV--YAFVATEGSRELKRELINEA------------LETLME  504
                 + V   GR              T+   +  + +IN              +E + +
Sbjct  446  PQTAQAYVHRIGRTGRGGKAGRAVTFFTKEDDQAVKPIINVMKQSGCEAGFSGWMENMTK  505

Query  505  QAVAAVQKMDQAEYQAK-IRDLQQAALTKRAAQAAQRENQRQQFPVEHVQLL  555
             +    +K+   E   K I  + +    KR  +    E  +++   E    L
Sbjct  506  MSKNEKKKVKHKEIDRKDISTVPKLVKHKRKQREQMIEASKKRKQEETRNAL  557


 Score = 55.2 bits (131),  Expect = 1e-06, Method: Composition-based stats.
 Identities = 27/136 (20%), Positives = 56/136 (41%), Gaps = 13/136 (10%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT------RAAAYVAKRHLETVDGAKV-VVLVNRVHL  59
            Q E +  +L G+++I   PTG+GKT         + +        +     +V+     L
Sbjct  147  QCESLPISLSGRDLIACAPTGSGKTLAFLIPLIQSLLVSSKGRPKNYGITGLVISPTNEL  206

Query  60   VTQHGEEFRRMLDGRW-TVTTLSGDMGPRAGFGHLA-RCHDLLICTAELLQMALTSPEEE  117
              Q  +E + +  G+   V  LS  +  +     +    +D+++ T   L   + + +  
Sbjct  207  AIQIFQELQILTRGKKLNVAILSKQLANKLNNDIVKASKYDIIVSTPLRLIDIVKNEK--  264

Query  118  EHVELTVFSLIVVDEC  133
              V+L+    +V+DE 
Sbjct  265  --VDLSKVEQLVIDEA  278


>sp|A2QEN5|IF4A_ASPNC ATP-dependent RNA helicase eIF4A OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=tif1 PE=3 SV=1
Length=398

 Score = 96.0 bits (237),  Expect = 7e-20, Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 47/118 (40%), Gaps = 14/118 (12%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K E     L   + +    + +IF  TR+    L   L         D     + G    
Sbjct  247  KEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKL------TARDFTVSAMHG----  296

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
                 M Q  +  ++++F+ G+  +L+AT +   G+D+   ++V+ Y L  N  + + 
Sbjct  297  ----DMEQGQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIH  350


 Score = 55.2 bits (131),  Expect = 1e-06, Method: Composition-based stats.
 Identities = 20/129 (16%), Positives = 44/129 (34%), Gaps = 6/129 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q   I P + G ++I    +G GKT   +    ++  + +   + +++     L  Q  +
Sbjct  52   QQRAIKPIIAGHDVIAQAQSGTGKTATFSISALQKIDQELKACQALIVAPTRELAQQIQK  111

Query  66   EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
                + D          G    R     L     +++ T   +   +    E   ++   
Sbjct  112  VVVAIGDFMNIECHACIGGTNVRDDMNALRAGPQVVVGTPGRIHDMI----ERRVLKTDQ  167

Query  125  FSLIVVDEC  133
              L ++DE 
Sbjct  168  MKLFILDEA  176


>sp|A6RY31|DHH1_BOTFB ATP-dependent RNA helicase dhh1 OS=Botryotinia 
fuckeliana (strain B05.10) OX=332648 GN=dhh1 PE=3 SV=1
Length=538

 Score = 97.2 bits (240),  Expect = 7e-20, Method: Composition-based stats.
 Identities = 49/325 (15%), Positives = 98/325 (30%), Gaps = 25/325 (8%)

Query  230  GDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND  289
            G  L+  + ++ + + +   +      +  + V  LSE       +  ++ +       +
Sbjct  152  GTTLRDDILRLQEPVHIIVGTPGRILDLAGKNVADLSECNMFVMDEADKLLSPEFTIVIE  211

Query  290  ALL-IHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPEN  348
             LL  H   R +   +A      ++     + +     +  + +     +        E 
Sbjct  212  QLLQFHPKDRQIMLFSATFPMTVKDF--SDKNMADPYEINLMDELTLRGITQFYAFVEEK  269

Query  349  PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN  408
             K+      L   FS     + IIF  +      L   + +              +G   
Sbjct  270  EKV----HCLNTLFSKLQINQSIIFCNSTNRVELLAKKITE--------------LGYSC  311

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
                  M Q ++  V   F++G    LV + +   G+DI   NVV+ +    N  + +  
Sbjct  312  FYSHARMIQANRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHR  371

Query  469  RGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQ  527
             GR  R      A             L N   E   E A                 ++ +
Sbjct  372  IGRSGRFGHLGLAINLISWEDRFN--LYNIERELGTEIAPIPQIIPKNLYVYETPENIPR  429

Query  528  AALT-KRAAQAAQRENQRQQFPVEH  551
                 +   + A    + QQ P +H
Sbjct  430  PVSNFQTNTRQASGPGRDQQQPTQH  454


 Score = 55.2 bits (131),  Expect = 2e-06, Method: Composition-based stats.
 Identities = 27/131 (21%), Positives = 48/131 (37%), Gaps = 10/131 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA---KVVVLVNRVHLVTQH  63
            Q E I  AL G++I+     G GKT  AA+V              + ++LV    L  Q 
Sbjct  74   QEEAIPVALTGRDILARAKNGTGKT--AAFVIPALERINPKNTKVQCLILVPTRELALQT  131

Query  64   GEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
             +  + +       V   +G    R     L     +++ T   +         +   +L
Sbjct  132  SQVCKTLGQHLGINVMVTTGGTTLRDDILRLQEPVHIIVGTPGRILD----LAGKNVADL  187

Query  123  TVFSLIVVDEC  133
            +  ++ V+DE 
Sbjct  188  SECNMFVMDEA  198


>sp|A2R0B5|SUB2_ASPNC ATP-dependent RNA helicase sub2 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=sub2 PE=3 SV=1
Length=440

 Score = 96.4 bits (238),  Expect = 7e-20, Method: Composition-based stats.
 Identities = 53/335 (16%), Positives = 115/335 (34%), Gaps = 51/335 (15%)

Query  200  PQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYE  259
            P  C   +  H+++   Q    + R      D+   +        +  EL      + Y 
Sbjct  123  PGECSILVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDVELLSN--KESYP  180

Query  260  QQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQD-----------  308
              VV       L  L   +  +L   R   A ++ +  + +D +   +D           
Sbjct  181  NIVVGT--PGRLNALVRDKKLSL---RNVKAFVLDECDKMLDQIDMRRDVQEIFRATPAD  235

Query  309  ---FYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG--------PENPKLEMLEKI  357
                     +++      ++ +    +   ++   L  HG         E  K   L ++
Sbjct  236  KQVMMFSATLSQEIRPVCKKFMRNPLEVYVDDDTKLTLHGLQQYYIKLSEAEKNRKLNEL  295

Query  358  LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ  417
            L          + IIF ++   A+ L   L++                    +  + ++Q
Sbjct  296  LDSL----EFNQVIIFVKSTLRANELDKLLRECNFPSI--------------AVHSGVSQ  337

Query  418  RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQS  477
             ++ +  ++F++    + VAT V   G+DI   N+ + Y L  +  S +   GRA    +
Sbjct  338  EERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGT  397

Query  478  ---VYAFVATEGSRELKRELINEALETLMEQAVAA  509
                 +FV+TE   ++ ++ I +  E  + +    
Sbjct  398  KGLSISFVSTEDDEKVLKD-IEKRFEVALPEYPEG  431


 Score = 47.5 bits (111),  Expect = 3e-04, Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 47/135 (35%), Gaps = 14/135 (10%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG-AKVVVLVNRVHLVTQ---  62
            Q   I  A+   +++    +G GKT          LE V G   ++V+ +   L  Q   
Sbjct  84   QQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSILVMCHTRELAYQIKN  143

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHD----LLICTAELLQMALTSPEEEE  118
                F + L    T     G   P      L    +    +++ T   L  AL   ++  
Sbjct  144  EYARFSKYLPDVKTAVFYGG--TPIQKDVELLSNKESYPNIVVGTPGRL-NALVRDKK--  198

Query  119  HVELTVFSLIVVDEC  133
             + L      V+DEC
Sbjct  199  -LSLRNVKAFVLDEC  212


>sp|Q9VVK8|DDX52_DROME Probable ATP-dependent RNA helicase DDX52 
OS=Drosophila melanogaster OX=7227 GN=ais PE=1 SV=1
Length=594

 Score = 97.6 bits (241),  Expect = 7e-20, Method: Composition-based stats.
 Identities = 75/489 (15%), Positives = 156/489 (32%), Gaps = 55/489 (11%)

Query  143  NVIMSQYLELKLQRAQPLPQVL---GLTASPGTGGASKLDGAINHVLQLCANLDTWCIMS  199
            N++   +      + Q LP +L    L A   TG    L      +  L A+  T     
Sbjct  133  NLLSRNFDHPTPIQMQALPVLLQRRALMACAPTGSGKTLAFLTPIINGLRAHKTTGLRAL  192

Query  200  PQNCCPQLQEHSQQPCKQYNLC------HRRSQDPFGDLLKKLMDQIHDHLEMPELSRKF  253
                  +L +   + C +                           Q +D L       +F
Sbjct  193  VLAPTRELAQQIYRECAELTRETGLRTHFISKVSEAKQKHGAECKQRYDILVSTPNRVRF  252

Query  254  GTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHRE  313
              Q  E  ++ LS        +  R+       + + L   D + A  +       +   
Sbjct  253  LLQQ-EPPLLDLSHVEWFVLDEADRLMEEGQNNFKEQL---DDIYAACSNPTKCVAFFSA  308

Query  314  HVT------KTQILCAERRLLALFDDRKNE--LAHLATHGPENPKLEMLEKILQRQFSSS  365
              T        + L    R+     +   E     L   G E  KL  +  ++++     
Sbjct  309  TYTVPVAKWALRHLKNLVRITIGVQNSATETVQQELLFVGSEGGKLVAIRDLVRQGL---  365

Query  366  NSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQ  425
              P  ++F ++++ A  L   L              L  G          +Q  +   ++
Sbjct  366  -QPPVLVFVQSKERAKQLFEEL--------------LYDGINVDVIHAERSQHQRDNCVK  410

Query  426  KFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYA--FV  482
             F++G++ +L+ T +   G+D    N+V+ Y      IS +   GR  RA +   A  F 
Sbjct  411  AFREGSIWVLICTELMGRGIDFKGVNLVINYDFPPTTISYIHRIGRTGRAGRPGRAITFF  470

Query  483  ATEGSRELKR-ELINEALETLMEQAVAAVQKMDQAEYQ-AKIRDLQQAALTKRAAQAAQR  540
              E +  L+   LI +     + + +  ++K+ ++E +    + L +  ++ +     + 
Sbjct  471  TQEDTSNLRGIALIIKNSGGTVPEYMLQMKKVRKSEAKMRAKKPLDREDISTKIRPETKG  530

Query  541  ENQRQQFPVEHVQLLCINCMVAVGHGSDLRKVEGTHHVNVNPNFSNYYNVSRDPVVINKV  600
            + + +   ++ V+          G+  DL           N       N+  +     K 
Sbjct  531  DEKHKSTKLKKVERTEKILKNRKGYEKDL-----------NSKQKKLGNIKTELKPAGKR  579

Query  601  FKDWKPGGV  609
              + +    
Sbjct  580  KGNVEKKTK  588


 Score = 60.6 bits (145),  Expect = 3e-08, Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 97/285 (34%), Gaps = 21/285 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLE--TVDGAKVVVLVNRVHLVTQHG  64
            Q + +   L+ + ++   PTG+GKT A        L      G + +VL     L  Q  
Sbjct  146  QMQALPVLLQRRALMACAPTGSGKTLAFLTPIINGLRAHKTTGLRALVLAPTRELAQQIY  205

Query  65   EEFRRMLDGRWTVTTLSGDMGP--RAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
             E   +       T     +    +       + +D+L+ T   ++  L   +E   ++L
Sbjct  206  RECAELTRETGLRTHFISKVSEAKQKHGAECKQRYDILVSTPNRVRFLLQ--QEPPLLDL  263

Query  123  TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAI  182
            +     V+DE     ++   N    Q  ++    + P   V   +A+     A      +
Sbjct  264  SHVEWFVLDEADRLMEEGQ-NNFKEQLDDIYAACSNPTKCVAFFSATYTVPVAKWALRHL  322

Query  183  NHVLQLCANLDTWCIMSPQNC--------------CPQLQEHSQQPCKQYNLCHRRSQDP  228
             +++++   +      + Q                   +++  Q P   +     R++  
Sbjct  323  KNLVRITIGVQNSATETVQQELLFVGSEGGKLVAIRDLVRQGLQPPVLVFVQSKERAKQL  382

Query  229  FGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAG  273
            F +LL   ++    H E  +  R    + + +  + +     L G
Sbjct  383  FEELLYDGINVDVIHAERSQHQRDNCVKAFREGSIWVLICTELMG  427


>sp|Q473K3|UVRB_CUPPJ UvrABC system protein B OS=Cupriavidus pinatubonensis 
(strain JMP 134 / LMG 1197) OX=264198 GN=uvrB 
PE=3 SV=1
Length=695

 Score = 97.9 bits (242),  Expect = 8e-20, Method: Composition-based stats.
 Identities = 98/652 (15%), Positives = 199/652 (31%), Gaps = 129/652 (20%)

Query  8    WEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEF  67
             E I   L  + ++    TG+GKT   A V  R      G   +V      L  Q   EF
Sbjct  44   VEGIEDGLSFQTLLGV--TGSGKTYTMANVIARM-----GRPAIVFAPNKTLAAQLYSEF  96

Query  68   RRMLDGRWTVTTLS----------------------------GDMGPRAGFGHLARCHDL  99
            R           +S                              M   A    L R   +
Sbjct  97   REFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEHIEQMRLSATKSLLERRDTI  156

Query  100  LICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQP  159
            ++ T   +       E  + +        +      + +D +  +I  QY   +    + 
Sbjct  157  IVATVSAIYGIGNPNEYHQMILTLRTGDKI------SQRDVIARLIAMQYTRNETDFQRG  210

Query  160  LPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYN  219
              +V G T        +++   +        +L  +  ++ +     +++   +     +
Sbjct  211  TFRVRGDTIDIFPAEHAEMAVRLEMFDDEVESLQFFDPLTGR-----VRQKIPRFTVYPS  265

Query  220  LCHRRSQDPFGDLLKKLMDQIHDHLEMP-ELSRKFGTQMYEQQVVKLSEAAALAGLQEQ-  277
              +   ++     ++ +  ++ D LE   + +R    Q  EQ+     E  +  G  +  
Sbjct  266  SHYVTPRETVLRAIEDIKAELRDRLEFFHKENRLVEVQRLEQRTRFDLEMLSELGFCKGI  325

Query  278  RVYALHLRRY---------NDALLIHDTVRAVDAL---AALQDFYHREHVTKTQILCAER  325
              Y+ HL             D L     +   ++      L   Y+ +   KT ++    
Sbjct  326  ENYSRHLSGAKPGEPPPTLVDYLPSDALMFLDESHVLIGQLNGMYNGDRARKTTLVEYGF  385

Query  326  RLLALFDDRKNELAHLAT--------------HGPEN----------------------P  349
            RL +  D+R  +                       E+                      P
Sbjct  386  RLPSALDNRPLKFEEFERKMRQVMFVSATPAQFEKEHAGQVVEQVVRPTGLVDPIIIVRP  445

Query  350  KLEMLEKILQRQ-FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN  408
                ++ +L           R ++ T T++ A  L  +L +               G   
Sbjct  446  ATTQVDDLLSEINLRVEAGERVLVTTLTKRMAEQLTEFLSEN--------------GVKV  491

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEI  463
                + +   ++ E+I+  + GT ++LV  ++  EGLDIP  ++V          L  E 
Sbjct  492  RYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAER  551

Query  464  SMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQ-------------AVAAV  510
            S++Q  GRA  + +  A +  +   +  R+ I+E      +Q              +  +
Sbjct  552  SLIQTIGRAARNVNGTAILYADRITDSMRKAIDETERRRAKQMAFNEANGITPRGVIKRI  611

Query  511  QKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQLLCINCMVA  562
            + +    Y A     +  A  +RA      E Q  +      +L+  +    
Sbjct  612  KDIIDGVYDAGEVKAELLAAQERARYEDMSEKQVSKEIKRLEKLMMDHAKNL  663


>sp|Q6CDS6|ROK1_YARLI ATP-dependent RNA helicase ROK1 OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=ROK1 PE=3 
SV=1
Length=547

 Score = 97.2 bits (240),  Expect = 8e-20, Method: Composition-based stats.
 Identities = 32/190 (17%), Positives = 72/190 (38%), Gaps = 19/190 (10%)

Query  370  GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD  429
             IIF ++   A +L               +  +  G         MT   +  VI +F++
Sbjct  367  VIIFLQSIDRAKAL--------------FKELVFDGINVDQIHGDMTAAKRASVIDRFRN  412

Query  430  GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSR  488
            G + +L+ T V   G+D    N+V+ Y +  +  S V   GR  RA +   A        
Sbjct  413  GEVWVLICTDVLARGIDFRGINLVINYDVPQSAQSYVHRIGRTGRAGRLGKAVTFFTKED  472

Query  489  ELKRELINEALETLMEQAVAAVQKM----DQAEYQAKIRDLQQAALTKRAAQAAQRENQR  544
                +++   ++   ++    +  +     +     K R +++  ++ + A A  ++ + 
Sbjct  473  ATNVKVVVNVMKQSGQEVPDWLNNLAPLTQKERDNIKNRPIKRKKISTQHALANNKKKRA  532

Query  545  QQFPVEHVQL  554
            +Q      ++
Sbjct  533  KQQMKGLKKM  542


 Score = 62.5 bits (150),  Expect = 8e-09, Method: Composition-based stats.
 Identities = 32/141 (23%), Positives = 53/141 (38%), Gaps = 18/141 (13%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-------KVVVLVNRVHL  59
            Q E I   L G+++I   PTG+GKT A +      L    G+       K +V+     L
Sbjct  138  QCESIPTMLNGRDLIACAPTGSGKTMAYSIPMVEMLGKKKGSKDAKKGIKALVVAPTKEL  197

Query  60   VTQ-HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHL------ARCHDLLICTAELLQMALT  112
             +Q     F   +        L   +  ++    L      ++ +D+ I T   L  AL 
Sbjct  198  ASQIFNAVFSLCVGVGKKKDELKPCLLDKSTADKLRNGKVSSQKYDICITTPLRLVSALN  257

Query  113  SPEEEEHVELTVFSLIVVDEC  133
                   ++L    L++ DE 
Sbjct  258  D----GSLDLGSLDLVIFDEA  274


>sp|P90897|RDE12_CAEEL DEAD-box ATP-dependent RNA helicase rde-12 
OS=Caenorhabditis elegans OX=6239 GN=rde-12 PE=1 SV=4
Length=959

 Score = 98.3 bits (243),  Expect = 8e-20, Method: Composition-based stats.
 Identities = 30/180 (17%), Positives = 65/180 (36%), Gaps = 23/180 (13%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K   L +IL++  +   + + IIF + +    +    L                 G    
Sbjct  629  KNAKLREILKQNVNG-KTLKTIIFVQKKDQCDACAAKLTSG--------------GMLAQ  673

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL--------TN  461
            +     +Q  ++++I  F+   +NLLV T +   G+D+   + V+ + L           
Sbjct  674  TLHGDRSQDMREKLINDFKSNRVNLLVTTDLLSRGIDVSDLDRVINFDLPDGDPDQGADT  733

Query  462  EISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK  521
             I      GR    ++       +   +    L  + +E ++ Q +  ++  D  +  AK
Sbjct  734  FIHRAGRTGRTGRKENGLCVSFVDPQSDRDSLLAPKLVELIISQNLPDLKVPDFLDAMAK  793


 Score = 54.4 bits (129),  Expect = 3e-06, Method: Composition-based stats.
 Identities = 31/149 (21%), Positives = 49/149 (33%), Gaps = 16/149 (11%)

Query  3    LRSYQWEVIMPALEGKNIIIWLPTGAGKTRA-------AAYVA----KRHLETVDGAKVV  51
            +R+ Q  +I   L+G +++    T AGKT A                +      DG   +
Sbjct  403  VRTIQGAMIPQVLDGHDVLGQAETSAGKTAAFGLPIIDKILRMDEETRNKARQDDGPLAL  462

Query  52   VLVNRVHLVTQHGEEFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMA  110
            +L     L  Q  E  R        +  LS G          +    D+LI T   +   
Sbjct  463  ILAPTRELAAQIHEALRTYCQNTDIIVLLSYGQSDRARSLNEIRNGCDILIGTCGRIMD-  521

Query  111  LTSPEEEEHVELTVFSLIVVDECHHTHKD  139
                  + H+ L     +V DE     +D
Sbjct  522  ---FTVKSHISLLHLRFLVFDEADRLLQD  547


>sp|Q0DLB9|RH17_ORYSJ DEAD-box ATP-dependent RNA helicase 17 OS=Oryza 
sativa subsp. japonica OX=39947 GN=RH17 PE=2 SV=2
Length=591

 Score = 97.2 bits (240),  Expect = 9e-20, Method: Composition-based stats.
 Identities = 36/139 (26%), Positives = 57/139 (41%), Gaps = 4/139 (3%)

Query  349  PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAH---SLLLWLQQQQGLQTVDIRAQLLIG  405
             +L +L  IL+  F    S + ++F  T  S     ++L  L+   GLQ    + Q  I 
Sbjct  305  SRLAILLTILKSLFERQLSHKVVVFLSTCDSVDFHHTVLSQLEWSPGLQLDTDKKQKFIS  364

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM  465
                    +M Q D+++    F      +LV+T VA  GLD P    +++Y         
Sbjct  365  CKVFRLHGNMDQDDRKKSFLGFSSEKSAILVSTDVAARGLDFPKVKCIIQYDSPGEASEY  424

Query  466  VQARGR-ARADQSVYAFVA  483
            V   GR AR  +   A + 
Sbjct  425  VHRVGRTARIGEKGEALLF  443


 Score = 54.4 bits (129),  Expect = 2e-06, Method: Composition-based stats.
 Identities = 30/139 (22%), Positives = 43/139 (31%), Gaps = 18/139 (13%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHL-------ETVDGAKVVVLVNRVHL  59
            Q + I  A+ G+++++   TG GKT A        L       E  DG   +VLV    L
Sbjct  51   QAQAIPVAMSGQHMLVKAATGTGKTLAYLAPIVHLLQMREPRVERTDGTFALVLVPTREL  110

Query  60   VTQ-----HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP  114
              Q          R           + G          L +   +LI T   L   L   
Sbjct  111  CLQVYGIAQQLVHRFH---WLVPGYIMGGENRAKEKARLRKGISILIATPGRLLDHLQHT  167

Query  115  EEEEHVELTVFSLIVVDEC  133
                +  +      V DE 
Sbjct  168  SSFVYPNMRWI---VFDEA  183


>sp|Q9M2E0|RH12_ARATH DEAD-box ATP-dependent RNA helicase 12 OS=Arabidopsis 
thaliana OX=3702 GN=RH12 PE=2 SV=1
Length=498

 Score = 96.8 bits (239),  Expect = 9e-20, Method: Composition-based stats.
 Identities = 58/382 (15%), Positives = 120/382 (31%), Gaps = 37/382 (10%)

Query  147  SQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG-----AINHVLQLCAN---LDTWCIM  198
              + +    + + +P  + LT S     A    G      I  + ++  N   +    ++
Sbjct  142  KGFEKPSPIQEESIP--IALTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQAMILV  199

Query  199  SPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMY  258
              +    Q  +  ++  K  N+  +      G  L+  + ++H  + +   +      + 
Sbjct  200  PTRELALQTSQVCKELSKYLNI--QVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRILDLT  257

Query  259  EQQVVKLSEAAALAGLQEQRVYALHLRRYNDALL-IHDTVRAVDALAALQDFYHREHVTK  317
            ++ V  L + A L   +  ++ +   +   + L+      R     +A      +    K
Sbjct  258  KKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMFSATFPVTVKAF--K  315

Query  318  TQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTR  377
             + L     +  +       +        E  K+      L   FS     + IIF  + 
Sbjct  316  DRHLRKPYVINLMDQLTLMGVTQYYAFVEERQKV----HCLNTLFSKLQINQSIIFCNSV  371

Query  378  QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA  437
                 L   + +              +G         M Q  +  V  +F++G    LV 
Sbjct  372  NRVELLAKKITE--------------LGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVC  417

Query  438  TSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELIN  496
            T +   G+DI   NVV+ +       S +   GR  R      A           R  + 
Sbjct  418  TDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYE---DRFKMY  474

Query  497  EALETLMEQAVAAVQKMDQAEY  518
            +  + L  +       +DQA Y
Sbjct  475  QTEQELGTEIKPIPSNIDQAIY  496


 Score = 47.5 bits (111),  Expect = 3e-04, Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 52/131 (40%), Gaps = 10/131 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT-RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q E I  AL G +I+     G GKT      V ++     +  + ++LV    L  Q  +
Sbjct  151  QEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQ  210

Query  66   EFR---RMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
              +   + L+ +  VT  +G    R     L +   LL+ T   +        ++    L
Sbjct  211  VCKELSKYLNIQVMVT--TGGTSLRDDIMRLHQPVHLLVGTPGRILD----LTKKGVCVL  264

Query  123  TVFSLIVVDEC  133
               +++V+DE 
Sbjct  265  KDCAMLVMDEA  275


>sp|Q1DQ20|IF4A_COCIM ATP-dependent RNA helicase eIF4A OS=Coccidioides 
immitis (strain RS) OX=246410 GN=TIF1 PE=3 SV=1
Length=398

 Score = 95.6 bits (236),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 47/118 (40%), Gaps = 14/118 (12%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K E     L   + +    + +IF  TR+    L   L         D     + G    
Sbjct  247  KEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLI------ARDFTVSAMHG----  296

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
                 M Q  +  ++++F+ G+  +L+AT +   G+D+   ++V+ Y L  N  + + 
Sbjct  297  ----EMEQNQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIH  350


 Score = 54.4 bits (129),  Expect = 2e-06, Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 44/129 (34%), Gaps = 6/129 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q   IMP ++G ++I    +G GKT   +    ++    +   + ++L     L  Q  +
Sbjct  52   QQRAIMPVIKGSDVIAQAQSGTGKTATFSISALQKVDTNLKACQALILAPTRELAQQIQK  111

Query  66   EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
                + D          G    R     L     +++ T   +   +        ++   
Sbjct  112  VVVAIGDFMSVECHACIGGTNVREDIKALNDGPQVVVGTPGRVHDMIQRRV----LKTDQ  167

Query  125  FSLIVVDEC  133
              + V+DE 
Sbjct  168  MKMFVLDEA  176


>sp|Q2HFP1|IF4A_CHAGB ATP-dependent RNA helicase eIF4A OS=Chaetomium 
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / 
NBRC 6347 / NRRL 1970) OX=306901 GN=TIF1 PE=3 SV=1
Length=397

 Score = 95.6 bits (236),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 48/118 (41%), Gaps = 14/118 (12%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K +     L   + +    + +IF  TR+    L   LQ        D     + G    
Sbjct  246  KEDWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLQ------ARDFTVSAMHG----  295

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
                 M Q  +  ++++F+ G+  +L+AT +   G+D+   ++V+ Y L  N  + + 
Sbjct  296  ----DMDQTQRDLIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIH  349


 Score = 57.5 bits (137),  Expect = 2e-07, Method: Composition-based stats.
 Identities = 24/129 (19%), Positives = 46/129 (36%), Gaps = 6/129 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q   IMP ++G ++I    +G GKT   +  V ++   TV   + ++L     L  Q  +
Sbjct  51   QQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQKIDPTVKSCQALILAPTRELAQQIQK  110

Query  66   EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
                + D          G    R     L     +++ T   +   +        ++   
Sbjct  111  VVIAIGDFMNIECHACIGGTSVRDDMKALQDGPQVIVGTPGRVHDMIQRR----ILKTDQ  166

Query  125  FSLIVVDEC  133
              + V+DE 
Sbjct  167  MKMFVLDEA  175


>sp|Q2U6P7|SUB2_ASPOR ATP-dependent RNA helicase sub2 OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=sub2 
PE=3 SV=1
Length=441

 Score = 96.0 bits (237),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 51/335 (15%), Positives = 114/335 (34%), Gaps = 51/335 (15%)

Query  200  PQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYE  259
            P  C   +  H+++   Q    + R      D+   +        +  E+      + Y 
Sbjct  124  PGECSVLVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDVEVLSN--KESYP  181

Query  260  QQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQD-----------  308
              VV       L  L   +  +L   R   A ++ +  + +D +   +D           
Sbjct  182  NIVVGT--PGRLNALVRDKKLSL---RNVKAFVLDECDKMLDQIDMRRDVQEIFRATPAD  236

Query  309  ---FYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG--------PENPKLEMLEKI  357
                     +++      ++ +    +   ++   L  HG         E  K   L ++
Sbjct  237  KQVMMFSATLSQEIRPVCKKFMRNPLEVYVDDDTKLTLHGLQQYYIKLSEAEKNRKLNEL  296

Query  358  LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ  417
            L          + IIF ++   A+ L   L++                    +  + ++Q
Sbjct  297  LDSL----EFNQVIIFVKSTLRANELDKLLRECNFPSI--------------AVHSGVSQ  338

Query  418  RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQS  477
             ++ +  ++F++    + VAT V   G+DI   N+ + Y L  +  S +   GRA    +
Sbjct  339  EERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGT  398

Query  478  ---VYAFVATEGSRELKRELINEALETLMEQAVAA  509
                 +FV+ E   ++ ++ I +  E  + +    
Sbjct  399  KGLSISFVSNEEDEKVLKD-IEKRFEVALPEYPEG  432


 Score = 47.1 bits (110),  Expect = 5e-04, Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 47/135 (35%), Gaps = 14/135 (10%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG-AKVVVLVNRVHLVTQ---  62
            Q   I  A+   +++    +G GKT          LE V G   V+V+ +   L  Q   
Sbjct  85   QQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQIKN  144

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHD----LLICTAELLQMALTSPEEEE  118
                F + L    T     G   P      +    +    +++ T   L  AL   ++  
Sbjct  145  EYARFSKYLPDVKTAVFYGG--TPIQKDVEVLSNKESYPNIVVGTPGRL-NALVRDKK--  199

Query  119  HVELTVFSLIVVDEC  133
             + L      V+DEC
Sbjct  200  -LSLRNVKAFVLDEC  213


>sp|Q7XMK8|RH6_ORYSJ DEAD-box ATP-dependent RNA helicase 6 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os04g0533000 PE=2 SV=1
Length=498

 Score = 96.4 bits (238),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 53/374 (14%), Positives = 116/374 (31%), Gaps = 34/374 (9%)

Query  147  SQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG--------AINHVLQLCANLDTWCIM  198
              +      + + +P  + LT S     A    G        A+  + Q    +    ++
Sbjct  142  KGFERPSPIQEESIP--IALTGSDILARAKNGTGKTAAFCIPALEKIDQDKNAIQVVILV  199

Query  199  SPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMY  258
              +    Q  +  ++  K   +  +      G  LK  + +++  + +   +      + 
Sbjct  200  PTRELALQTSQVCKELGKHLKI--QVMVTTGGTSLKDDIVRLYQPVHLLVGTPGRILDLT  257

Query  259  EQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIH-DTVRAVDALAALQDFYHREHVTK  317
            ++ V  L   + L   +  ++ +   +     L+ +  + R +   +A      +E   K
Sbjct  258  KKGVCVLKNCSMLVMDEADKLLSPEFQPSIQELIRYLPSNRQILMFSATFPVTVKEF--K  315

Query  318  TQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTR  377
             + L     +  + +     +        E  K+      L   FS     + IIF  + 
Sbjct  316  DKYLPKPYVINLMDELTLKGITQFYAFVEERQKV----HCLNTLFSKLQINQSIIFCNSV  371

Query  378  QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA  437
                 L   + +              +G         M Q  +  V   F++G    LV 
Sbjct  372  NRVELLAKKITE--------------LGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC  417

Query  438  TSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELIN  496
            T +   G+DI   NVV+ +    +  + +   GR  R      A              I 
Sbjct  418  TDLFTRGIDIQAVNVVINFDFPKSAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIE  477

Query  497  EALETLMEQAVAAV  510
            + L T ++     +
Sbjct  478  QELGTEIKPIPPQI  491


 Score = 54.4 bits (129),  Expect = 3e-06, Method: Composition-based stats.
 Identities = 34/132 (26%), Positives = 53/132 (40%), Gaps = 12/132 (9%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK----VVVLVNRVHLVTQ  62
            Q E I  AL G +I+     G GKT  AA+     LE +D  K    VV+LV    L  Q
Sbjct  151  QEESIPIALTGSDILARAKNGTGKT--AAFCIPA-LEKIDQDKNAIQVVILVPTRELALQ  207

Query  63   HGEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVE  121
              +  + +    +  V   +G    +     L +   LL+ T   +        ++    
Sbjct  208  TSQVCKELGKHLKIQVMVTTGGTSLKDDIVRLYQPVHLLVGTPGRILD----LTKKGVCV  263

Query  122  LTVFSLIVVDEC  133
            L   S++V+DE 
Sbjct  264  LKNCSMLVMDEA  275


>sp|Q56X76|RH39_ARATH DEAD-box ATP-dependent RNA helicase 39 OS=Arabidopsis 
thaliana OX=3702 GN=RH39 PE=2 SV=2
Length=621

 Score = 97.2 bits (240),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 75/201 (37%), Gaps = 22/201 (11%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            KLE L ++L+     +   + ++F  T  S+ ++  +L + Q                  
Sbjct  355  KLEALLQVLEPSL--AKGSKVMVFCNTLNSSRAVDHYLSENQ--------------ISTV  398

Query  410  SQSTHMTQRDQQEVIQKFQD--GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
            +    +    + E ++KF+D  G    LV T +A  GLD+   + VV +    N I  + 
Sbjct  399  NYHGEVPAEQRVENLKKFKDEEGDCPTLVCTDLAARGLDL-DVDHVVMFDFPKNSIDYLH  457

Query  468  ARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQ  526
              GR AR               ++    I EA+     +++ ++   +     A+    Q
Sbjct  458  RTGRTARMGAKGKVTSLVSRKDQMLAARIEEAMRN--NESLESLTTDNVRRDAARTHITQ  515

Query  527  QAALTKRAAQAAQRENQRQQF  547
            +   + +  +   ++   +  
Sbjct  516  EKGRSVKQIREVSKQRNSRDK  536


 Score = 56.0 bits (133),  Expect = 8e-07, Method: Composition-based stats.
 Identities = 64/353 (18%), Positives = 112/353 (32%), Gaps = 35/353 (10%)

Query  22   IWLP--TGAGKTRAAAYVAKRHLE----------TVDGAKVVVLVNRVHLVTQHGEEFRR  69
            + L   TG+GKT A      + +                + VVL     L  Q     + 
Sbjct  152  VVLGSHTGSGKTLAYLLPIVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKS  211

Query  70   ML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLI  128
            +    R+    +SG    R     L    D+++ T   +   +    EE ++     + +
Sbjct  212  ISHHARFRSILVSGGSRIRPQEDSLNNAIDMVVGTPGRILQHI----EEGNMVYGDIAYL  267

Query  129  VVDECHHTHKDTVYNVIMSQYLELKLQRAQPL----PQVLGLTASPGTGGASKLDGAINH  184
            V+DE   T  D  +   + ++L    QRA        Q + +TA+        +D     
Sbjct  268  VLDEA-DTMFDRGFGPEIRKFLAPLNQRALKTNDQGFQTVLVTATMTMAVQKLVDEEFQG  326

Query  185  VLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQD-----PFGDLLKKLMDQ  239
            +  L  +     I + ++   +L     +      +             F + L      
Sbjct  327  IEHLRTSTLHKKIANARHDFIKLSGGEDKLEALLQVLEPSLAKGSKVMVFCNTLNSSRAV  386

Query  240  IHDHLEMPELSRKF-GTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVR  298
             H   E    +  + G    EQ+V  L +     G     V      R  D  L  D V 
Sbjct  387  DHYLSENQISTVNYHGEVPAEQRVENLKKFKDEEGDCPTLVCTDLAARGLD--LDVDHVV  444

Query  299  AVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELA---HLATHGPEN  348
              D      D+ HR   T    + A+ ++ +L   +   LA     A    E+
Sbjct  445  MFDFPKNSIDYLHRTGRTAR--MGAKGKVTSLVSRKDQMLAARIEEAMRNNES  495


>sp|Q54BD6|DDX51_DICDI Probable ATP-dependent RNA helicase ddx51 
OS=Dictyostelium discoideum OX=44689 GN=ddx51 PE=3 SV=1
Length=563

 Score = 96.8 bits (239),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 44/299 (15%), Positives = 102/299 (34%), Gaps = 19/299 (6%)

Query  236  LMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDAL-LIH  294
            L     D LE+   S    + + +QQ  +L +  +   ++            N    L  
Sbjct  185  LRQSFQDWLEIVIDSTNQHSDLNQQQEEQLIKYNSKGDIELFEKSISLKDNNNQMNHLCW  244

Query  295  DTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPE----NPK  350
               + V  L +    Y+   ++  Q+        +   + K  +             + K
Sbjct  245  SEFKLVKLLLSATMTYNPSKISLLQLNAPLFFTTSKTKEIKYSMPSTLKECYIISNGDQK  304

Query  351  LEMLEKILQRQF-----SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
              +L  I+         +  N  + I FT++    H L   L+    +  +    +    
Sbjct  305  PLVLLNIIYESLLKNNANGENKKKIICFTKSVDITHRLNTLLKLIGQVDKLKFTCEEY--  362

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM  465
                  S+ ++  ++ +++ +F+   +++L+ + +   G+DI   +VV+ Y    N    
Sbjct  363  ------SSSLSTVERADLLSRFKLNQIDILICSDIMSRGMDIQDIDVVINYNTPPNITLY  416

Query  466  VQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIR  523
            V   GR ARA     ++   + S       + +  E          +     ++Q+  +
Sbjct  417  VHRVGRTARAGNFGVSYTIVDKSEIKYYISMMKKAERSQTLHCLKWKPNVYEKFQSSYK  475


 Score = 48.3 bits (113),  Expect = 2e-04, Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 54/145 (37%), Gaps = 19/145 (13%)

Query  7    QWEV--IMPALEGKNIIIWLPTGAGKTRAAA--YVAKRHLETVDGAKVVVLVNRVHLVTQ  62
            Q E+   +   EG +I +  PTG+GKT A A   V K     V   +V V+V    LV Q
Sbjct  42   QQEIVPFINRTEGHDICVCAPTGSGKTLAYAIPLVQKIVKRVVRRVRVAVIVPTHDLVIQ  101

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCH------------DLLICTAELLQMA  110
              + F+ ++ G   V    G          L + H            D+++ T   +   
Sbjct  102  VEKTFQSIIKGTDLVVLSLGVKPFHIEQKLLIKNHSYGEHALYESLVDIIVSTPGRIVDH  161

Query  111  LTSPEEEEHVELTVFSLIVVDECHH  135
            +          L   + +V+DE   
Sbjct  162  INETLG---FTLKYLNYLVIDEADR  183


>sp|Q0DWT8|RH1_ORYSJ DEAD-box ATP-dependent RNA helicase 1 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os02g0795900 PE=2 SV=1
Length=521

 Score = 96.4 bits (238),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 37/221 (17%), Positives = 82/221 (37%), Gaps = 23/221 (10%)

Query  337  ELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTV  396
            +L         N K   L  +LQ         + ++FT + +S+H L   L+  + L   
Sbjct  314  KLQSYKLVCKSNLKPLSLIVLLQEL----RGEKCLVFTSSVESSHRLSTLLEFFEDLPF-  368

Query  397  DIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY  456
                        S  S    +  +++ +  F++G +++L+ T     G+ I     V+ Y
Sbjct  369  ----------KFSEYSRLQRESTRRKTLDAFKEGKIDVLIGTDRMARGIHIDGLRYVINY  418

Query  457  GLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE-------ALETLMEQAVA  508
             +     + +   GR ARA +S   F           + + +       +L +L E++V 
Sbjct  419  DMPPYVKTYIHRAGRTARAGESGSCFTFLRKHEVKAFDKMLKKADNSSCSLHSLPEESVE  478

Query  509  AVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPV  549
             ++ +  +  +     L+  A  K  +        +++  +
Sbjct  479  TLRPVFSSALKKLEESLESEATKKSKSGDKAPNASKRKRTI  519


 Score = 45.6 bits (106),  Expect = 0.001, Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 47/149 (32%), Gaps = 27/149 (18%)

Query  8    WEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHL--ETVDGAKVVVLVNRVHLVTQHGE  65
             E I P    ++I I  PTG+GKT A A    + L    V   + +V++    L  Q  E
Sbjct  69   LETIGPGAFERDICINSPTGSGKTLAYALPIVQMLATRKVRCLRALVVLPTRDLALQVKE  128

Query  66   EFRRMLD----------------------GRWTVTTLSGDMGPRAGFGHLARCHDLLICT  103
             F  +                           +   L   +             D+L+ T
Sbjct  129  VFDAIAPVVGLSVGSAVGQSSIADEVSNLIEKSKQGLFPSLDEEYIQMEPQTKVDILVAT  188

Query  104  AELLQMALTSPEEEEHVELTVFSLIVVDE  132
               L   ++  +      L     +VVDE
Sbjct  189  PGRLMDHISMTKG---FSLEHLQYLVVDE  214


>sp|Q90WU3|DDX1_CHICK ATP-dependent RNA helicase DDX1 OS=Gallus 
gallus OX=9031 GN=DDX1 PE=1 SV=1
Length=740

 Score = 97.2 bits (240),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 29/141 (21%), Positives = 56/141 (40%), Gaps = 11/141 (8%)

Query  355  EKILQRQF-----SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
             KIL+ ++           + IIF RT+    ++  +  QQ G           +     
Sbjct  489  IKILKGEYTVRAIKEHKMDQAIIFCRTKIDCDNMEQYFIQQGGGPDRKGHQFSCV-----  543

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                    +++++ +++F+ G +  L+ T VA  G+DI     V+   L   + + V   
Sbjct  544  CLHGDRKPQERKQNLERFKRGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRI  603

Query  470  GR-ARADQSVYAFVATEGSRE  489
            GR  RA++   A       +E
Sbjct  604  GRVGRAERMGLAISLVAKEKE  624


>sp|Q0UU86|IF4A_PHANO ATP-dependent RNA helicase eIF4A OS=Phaeosphaeria 
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) 
OX=321614 GN=TIF1 PE=3 SV=1
Length=396

 Score = 95.2 bits (235),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 47/118 (40%), Gaps = 14/118 (12%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K +     L   + +    + +IF  TR+    L   L         D     + G    
Sbjct  245  KEDWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKL------TARDFTVSAMHG----  294

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
                 M Q  +  ++++F+ G+  +L+AT +   G+D+   ++V+ Y L  N  + + 
Sbjct  295  ----DMDQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIH  348


 Score = 56.0 bits (133),  Expect = 7e-07, Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 44/129 (34%), Gaps = 6/129 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q   IMP ++G ++I    +G GKT   +    ++    V   + ++L     L  Q  +
Sbjct  50   QQRAIMPVIKGHDVIAQAQSGTGKTATFSISTLQKIDSNVKACQALILAPTRELAQQIQK  109

Query  66   EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
                + D          G    R     L     +++ T   +   +        ++   
Sbjct  110  VVVAIGDFMDVACHACIGGTSVRDDMKALQDGPQVVVGTPGRVHDMIQRRV----LKTDH  165

Query  125  FSLIVVDEC  133
              + V+DE 
Sbjct  166  MKMFVLDEA  174


>sp|Q8X0X2|DBP5_NEUCR ATP-dependent RNA helicase dbp-5 OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / 
DSM 1257 / FGSC 987) OX=367110 GN=dbp-5 PE=3 SV=1
Length=483

 Score = 96.0 bits (237),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 33/195 (17%), Positives = 75/195 (38%), Gaps = 29/195 (15%)

Query  349  PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN  408
            P  +    IL + +        +IF RTR++A+ +      Q+ ++    +   L GA  
Sbjct  296  PTEKDKYDILCKLYGLMTIGSSVIFVRTRETANEI------QKRMEADGHKVSALHGAYE  349

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL--------T  460
                     + +  ++ +F+ G   +L+ T+V   G+D+   ++V+ Y +          
Sbjct  350  G--------QSRDVLLDEFRSGRSKVLITTNVLARGIDVSSVSMVINYDIPMKGPGEREP  401

Query  461  NEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQ  519
            +  + +   GR  R  +   +       R        EAL  + +     + +++  +  
Sbjct  402  DAETYLHRIGRTGRFGRVGVSISFVHDRRSF------EALSQIAQFYGIDLIQLNPNDLD  455

Query  520  AKIRDLQQAALTKRA  534
               R +Q+   + RA
Sbjct  456  DTERKVQEVIKSSRA  470


 Score = 47.5 bits (111),  Expect = 4e-04, Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 43/118 (36%), Gaps = 8/118 (7%)

Query  18   KNIIIWLPTGAGKT--RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRW  75
            +N+I    +G GKT       +++  L      + ++L     L  Q     + +  G++
Sbjct  114  RNMIAQSQSGTGKTAAFVLTVLSRIDLSKPHQPQALLLAPSRELARQIQTVVQTI--GQF  171

Query  76   TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC  133
                +     P A          +++ T   +   +   +     +++   ++V+DE 
Sbjct  172  CENLIVEAAIPGAISRETGVRGSVVVGTPGTVMDLVKRRQ----FDISQLKVLVIDEA  225


>sp|Q869P0|DDX31_DICDI ATP-dependent DNA helicase DDX31 OS=Dictyostelium 
discoideum OX=44689 GN=ddx31 PE=3 SV=2
Length=908

 Score = 97.2 bits (240),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 64/489 (13%), Positives = 156/489 (32%), Gaps = 53/489 (11%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTR-----AAAYVAKRHLETVDGAKVVVLVNRVHLVT  61
            Q   I P L+G + ++   TG+GKT          + ++ +   DG   V++     L +
Sbjct  235  QEASITPILKGNDALVKAQTGSGKTLSYLIPVVQKLTEQRVTRSDGCYCVIITPTRELSS  294

Query  62   QHGEEFRRMLDGRWTV--TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
            Q  EE +++L   + +    + G     A    + +  ++L+ T   L   L + +    
Sbjct  295  QIYEELQKLLKPFYWIVPGIIMGGENRSAEKARIRKGINILVATPGRLLDHLQNTQS---  351

Query  120  VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLD  179
                     ++DE               + L+L  ++               T   + LD
Sbjct  352  FPTDNIKWCILDEA-------------DKLLDLGFEKD-------------VTTIINLLD  385

Query  180  GAINHVLQLCANLDTWCIMSPQNCC-PQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMD  238
                 +     N+     +S        L   S       +    + ++PF    K+++ 
Sbjct  386  SKKRTMKFKRQNILVSATLSEGISRLASLSLTSPVYIGLDSKVLEKGENPFQAAEKEMLQ  445

Query  239  QIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVR  298
                             Q Y +   K    + +A ++ +       +    +       +
Sbjct  446  APKQ-----------LDQFYVEVESKERLTSLIAFIRWKTSNITIDKGDVASGNSSANSK  494

Query  299  AVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKIL  358
             +   ++        ++     +  ER +     ++  +   +  H  +N K+       
Sbjct  495  MIVFFSSCDSVDFHHYMFSNMKMDKERGVKRTKKEQIKQDKLIQQHKQKNSKIFQTGNES  554

Query  359  QRQFSSSNSPRGIIFTRTRQSAHS---LLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHM  415
              + S ++         +         +   +++        ++  +            +
Sbjct  555  DDEESDNDDSDDSDSNNSDSETDEEKEIEKQIKEATSNPNYRVKTSVF-SVPIFKLHGEL  613

Query  416  TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA  474
             Q+ + +    F++    +L+ T V+  GLD+P  N +V+Y   ++    +   GR AR 
Sbjct  614  DQQTRTKTFFDFKNSPNGILLTTDVSARGLDLPSVNWIVQYDPCSDTKDYIHRIGRTARL  673

Query  475  DQSVYAFVA  483
                 + + 
Sbjct  674  GNQGCSLLF  682


>sp|Q109G2|RH12_ORYSJ DEAD-box ATP-dependent RNA helicase 12 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os10g0503700 PE=2 
SV=2
Length=521

 Score = 96.0 bits (237),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 54/373 (14%), Positives = 111/373 (30%), Gaps = 32/373 (9%)

Query  147  SQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG--------AINHVLQLCANLDTWCIM  198
              +      + + +P  + LT S     A    G        A+  +      +    ++
Sbjct  165  KGFERPSPIQEESIP--IALTGSDILARAKNGTGKTAAFCIPALEKIDPEKNAIQVVILV  222

Query  199  SPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMY  258
              +    Q  +  ++  K  N+  +      G  LK  + +++  + +   +      + 
Sbjct  223  PTRELALQTSQVCKELGKYLNI--QVMVSTGGTSLKDDIMRLYQPVHLLVGTPGRILDLT  280

Query  259  EQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKT  318
             + +  L + + L   +  ++ A   +   + L IH        L     F       K 
Sbjct  281  RKGICVLKDCSMLVMDEADKLLAPEFQPSIEQL-IHFLPANRQLLMFSATFPVTVKDFKE  339

Query  319  QILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQ  378
            + L     +  + +     +        E  K+      L   FS     + IIF  +  
Sbjct  340  KYLPRPYVINLMDELTLKGITQYYAFVEERQKV----HCLNTLFSKLQINQSIIFCNSVN  395

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT  438
                L   + +              +G         M Q  +  V   F++G    LV T
Sbjct  396  RVELLAKKITE--------------LGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCT  441

Query  439  SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE  497
             +   G+DI   NVV+ +       + +   GR  R      A              I +
Sbjct  442  DLFTRGIDIQAVNVVINFDFPKTSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQ  501

Query  498  ALETLMEQAVAAV  510
             L T ++     +
Sbjct  502  ELGTEIKTIPPQI  514


 Score = 55.6 bits (132),  Expect = 1e-06, Method: Composition-based stats.
 Identities = 30/131 (23%), Positives = 48/131 (37%), Gaps = 10/131 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA---KVVVLVNRVHLVTQH  63
            Q E I  AL G +I+     G GKT  AA+      +        +VV+LV    L  Q 
Sbjct  174  QEESIPIALTGSDILARAKNGTGKT--AAFCIPALEKIDPEKNAIQVVILVPTRELALQT  231

Query  64   GEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
             +  + +       V   +G    +     L +   LL+ T   +         +    L
Sbjct  232  SQVCKELGKYLNIQVMVSTGGTSLKDDIMRLYQPVHLLVGTPGRILD----LTRKGICVL  287

Query  123  TVFSLIVVDEC  133
               S++V+DE 
Sbjct  288  KDCSMLVMDEA  298


>sp|Q3ZBV2|DD19A_BOVIN ATP-dependent RNA helicase DDX19A OS=Bos 
taurus OX=9913 GN=DDX19A PE=2 SV=1
Length=478

 Score = 95.6 bits (236),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 68/183 (37%), Gaps = 31/183 (17%)

Query  345  GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI  404
               + K + L  I    + +    + +IF  TR++A  L   L ++              
Sbjct  314  NSRDEKFQALCNI----YGAITIAQAMIFCHTRKTASWLAAELSKE--------------  355

Query  405  GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL-----  459
            G   +  S  M    +  VI++F++G   +LV T+V   G+D+   +VV+ + L      
Sbjct  356  GHQVALLSGEMVVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDG  415

Query  460  -TNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAE  517
              +  + +   GR  R  +   A    +    +        L  + E     ++++D  +
Sbjct  416  NPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSM------NILNRIQEHFNKKIERLDTDD  469

Query  518  YQA  520
               
Sbjct  470  LDE  472


 Score = 46.7 bits (109),  Expect = 7e-04, Method: Composition-based stats.
 Identities = 21/117 (18%), Positives = 41/117 (35%), Gaps = 5/117 (4%)

Query  18   KNIIIWLPTGAGKTRAAAYVAKRHLETVDG-AKVVVLVNRVHLVTQHGEEFRRMLDGRWT  76
            +N+I    +G GKT A        +E  +   + + L     L  Q G+   +M      
Sbjct  131  QNLIAQSQSGTGKTAAFVLAMLSRVEPAERYPQCLCLSPTYELALQTGKVIEQMGKFHPE  190

Query  77   VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC  133
            +       G +   G     H ++I T   +        + + ++     + V+DE 
Sbjct  191  LKLAYAVRGNKLERGQKISEH-IVIGTPGTVLD---WCSKLKFIDPKKIKVFVLDEA  243


>sp|A6RJ45|IF4A_BOTFB ATP-dependent RNA helicase eIF4A OS=Botryotinia 
fuckeliana (strain B05.10) OX=332648 GN=tif1 PE=3 SV=1
Length=398

 Score = 94.9 bits (234),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 47/118 (40%), Gaps = 14/118 (12%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K +     L   + +    + +IF  TR+    L   L         D     + G    
Sbjct  247  KEDWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKL------TARDFTVSAMHG----  296

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
                 M Q  +  ++++F+ G+  +L+AT +   G+D+   ++V+ Y L  N  + + 
Sbjct  297  ----DMDQGQRDLIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIH  350


 Score = 59.0 bits (141),  Expect = 6e-08, Method: Composition-based stats.
 Identities = 23/129 (18%), Positives = 45/129 (35%), Gaps = 6/129 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q   IMP ++G ++I    +G GKT   +  V ++    V   + ++L     L  Q  +
Sbjct  52   QQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQKLDPNVKQCQALILAPTRELAQQIQK  111

Query  66   EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
                + D          G    R     L     +++ T   +   +        ++   
Sbjct  112  VVVAIGDFMNVECHACIGGTSVRDDMKALQDGPQVVVGTPGRVHDMIQRR----FLKTDS  167

Query  125  FSLIVVDEC  133
              + V+DE 
Sbjct  168  MKMFVLDEA  176


>sp|Q76PD3|DBP6_SCHPO ATP-dependent RNA helicase dbp6 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=dbp6 
PE=2 SV=1
Length=604

 Score = 96.4 bits (238),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 35/189 (19%), Positives = 73/189 (39%), Gaps = 14/189 (7%)

Query  357  ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT  416
            +L     S N    + F ++ ++A  L   L+             L          + ++
Sbjct  421  LLYHLIHSKNLTNILCFVKSNEAAARLHRLLELIHESLNQSFSCGLFT--------SSLS  472

Query  417  QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARAD  475
            + +++++I +F  G LNLLV + +   G+D+ +   V+ Y    +  S V   GR ARA 
Sbjct  473  RDERKKIISRFATGDLNLLVCSDLMARGIDVANTQNVINYDPPLSVRSYVHRIGRTARAG  532

Query  476  QSVYAF-VATEGSRELKRELINEALETL-MEQAVAAVQKMDQA---EYQAKIRDLQQAAL  530
            +  +A+ +          +L+ +   TL +++       + +     Y   +  L+    
Sbjct  533  REGFAWTLVQSHEGHHFSKLVKQLRRTLPIKRIKIEFSHISEEFVVAYDKALEALRVEVF  592

Query  531  TKRAAQAAQ  539
              R  Q   
Sbjct  593  NSRYPQQKS  601


 Score = 54.4 bits (129),  Expect = 3e-06, Method: Composition-based stats.
 Identities = 27/124 (22%), Positives = 44/124 (35%), Gaps = 11/124 (9%)

Query  20   IIIWLPTGAGKTRAAAYVAKRHL--ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGR-WT  76
            + +   TG+GKT +      + L   TV   + VV+V    L  Q  + F   + G    
Sbjct  176  VCVSAATGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQVAKTFEYYMSGAGLQ  235

Query  77   VTTLSGDMGPR-----AGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVD  131
            V   +G    R               D+L+ T   L   + +   +E   L     +V+D
Sbjct  236  VCAWTGQKSLRHETYQLNGDENECRIDVLVSTPGRLVDHIRN---DESFSLQHLRYMVID  292

Query  132  ECHH  135
            E   
Sbjct  293  EADR  296


>sp|Q6BKH3|DBP7_DEBHA ATP-dependent RNA helicase DBP7 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / 
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DBP7 PE=3 SV=1
Length=798

 Score = 96.8 bits (239),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 68/543 (13%), Positives = 164/543 (30%), Gaps = 93/543 (17%)

Query  22   IWLPTGAGKTRAAAYVAKRHLETVDGAKV--------VVLVNRVHLVTQHGEEFRRMLDG  73
            +   TG+GKT +        L + +  K+        ++LV    L TQ       ++  
Sbjct  205  VKAQTGSGKTLSFLLPIFHKLMSEEKYKITRESGLFAIILVPTRELCTQIYGVLETLVRC  264

Query  74   RWTV--TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVD  131
               +    + G    ++    L +  ++L+ T   L   + +      ++++    +++D
Sbjct  265  HHHIVPGIVIGGEKKKSEKARLRKGVNILVATPGRLADHMENTTS---LDVSQLRWLILD  321

Query  132  ECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQL-CA  190
            E                    +L   + + ++     +      SK+   I+    L   
Sbjct  322  EGDRLT---------------ELGFEETITKI-----TDNISKNSKISETIHKYQGLPTE  361

Query  191  NLDTWCIMSPQNCCPQLQEHS-QQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPEL  249
             ++  C  + Q+   +L       P       +++ +                + +  E 
Sbjct  362  RVNVLCSATIQDNVKKLGNMILNNPETISVDSNKQIEGTL-------------NFDDEEE  408

Query  250  SRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDF  309
               F +   E + +   +      +Q+  V    LR    + ++    +  ++L    D 
Sbjct  409  QNNFDSNNSEGKRMSAPDQL----IQKILVVPPKLRLVALSAMLKKLSKETNSL---DDG  461

Query  310  YHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPR  369
             +R  +       +      +F    N          E  K E +E      +S  ++  
Sbjct  462  VNRRTIVFFSCSDSLNFHFDVFTRNGNMFKK--RKNRETDKFETVE---VPYYSKYDN--  514

Query  370  GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS--SQSTHMTQRDQQEVIQKF  427
                              +         I    ++G+ +        ++Q+ +   +Q F
Sbjct  515  ------------------EDDNEEDKPSILTAPILGSNSCVYKLHGSLSQQQRATTLQAF  556

Query  428  --------QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQ--  476
                         ++L  T VA  GLD+P+ + V+ Y    +    +   GR AR     
Sbjct  557  IKEKNEGKNSAKHSILFCTDVASRGLDLPNISSVIEYDPPFSVEDHLHRIGRSARVGNEG  616

Query  477  SVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQ  536
            S   F+            I           + + + + +  +     D ++   + +   
Sbjct  617  SAVLFLLPGNEEGYVDGKIRVVHPKEDNLRIISYEDVLKEGFAEPEEDQEEKKASTKPDP  676

Query  537  AAQ  539
              +
Sbjct  677  KKR  679


>sp|A7EGL7|IF4A_SCLS1 ATP-dependent RNA helicase eIF4A OS=Sclerotinia 
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 
GN=tif1 PE=3 SV=1
Length=398

 Score = 94.5 bits (233),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 47/118 (40%), Gaps = 14/118 (12%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K +     L   + +    + +IF  TR+    L   L         D     + G    
Sbjct  247  KEDWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKL------TARDFTVSAMHG----  296

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
                 M Q  +  ++++F+ G+  +L+AT +   G+D+   ++V+ Y L  N  + + 
Sbjct  297  ----DMDQGQRDLIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIH  350


 Score = 59.0 bits (141),  Expect = 6e-08, Method: Composition-based stats.
 Identities = 23/129 (18%), Positives = 45/129 (35%), Gaps = 6/129 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q   IMP ++G ++I    +G GKT   +  V ++    V   + ++L     L  Q  +
Sbjct  52   QQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQKLDPNVKQCQALILAPTRELAQQIQK  111

Query  66   EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
                + D          G    R     L     +++ T   +   +        ++   
Sbjct  112  VVVAIGDFMNVECHACIGGTSVRDDMKALQDGPQVVVGTPGRVHDMIQRR----FLKTDS  167

Query  125  FSLIVVDEC  133
              + V+DE 
Sbjct  168  MKMFVLDEA  176


>sp|Q8SQK9|DHH1_ENCCU ATP-dependent RNA helicase DHH1 OS=Encephalitozoon 
cuniculi (strain GB-M1) OX=284813 GN=DHH1 PE=3 SV=2
Length=487

 Score = 95.6 bits (236),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 57/364 (16%), Positives = 108/364 (30%), Gaps = 49/364 (13%)

Query  191  NLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELS  250
            NL              +                    P  +L  ++   +    E   + 
Sbjct  145  NLLVRSKNGTGKTASYIVPMLNMINSSELSIQGIILVPIRELALQISRNVKRMSEGTGVI  204

Query  251  RK--FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQD  308
                 G    +  ++++S    +      R+  L  +R     L    +   D    L D
Sbjct  205  SAPVVGGTSMQDDIIRVSNGVHVMVGTPGRIVDLVEKRVGT--LSKRVILVFDEADKLLD  262

Query  309  FYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPENPKL-EMLEKILQRQFS  363
                E VTK   L    + + L+                  P    L + L  +  +QF 
Sbjct  263  VTFGETVTKLLDLLPREKQMLLYSATFPYFVTGFIRRYMKNPLCINLMKELAPVGVKQFY  322

Query  364  SSNSP-----------------RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA  406
            +   P                 + +IF  + ++   L + + +              +G 
Sbjct  323  TYVKPSEKLLCLKSLLLRLSINQCVIFCNSIKTVELLAMKITE--------------MGL  368

Query  407  GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV  466
             +    + M Q D+  V   F  G   +LVAT +   G+D P+ N V+ + +  +  S +
Sbjct  369  PSYFIHSKMAQEDRNIVFHNFLKGKCKILVATDLITRGVDAPNTNYVINFDISKSPESYL  428

Query  467  QARGRA---RADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIR  523
               GRA    A     + V TE    L        +E  + + ++ +     +       
Sbjct  429  HRIGRAGRFGAPGVAISLVTTEEKEML------MDIEAKLGKEISPLSDKGLSRLHESNI  482

Query  524  DLQQ  527
            D  Q
Sbjct  483  DRNQ  486


 Score = 45.9 bits (107),  Expect = 0.001, Method: Composition-based stats.
 Identities = 23/129 (18%), Positives = 50/129 (39%), Gaps = 6/129 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE  65
            Q   I   L GKN+++    G GKT +        + + + + + ++LV    L  Q   
Sbjct  133  QVASIPHVLGGKNLLVRSKNGTGKTASYIVPMLNMINSSELSIQGIILVPIRELALQISR  192

Query  66   EFRRMLDGRWTVTT-LSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
              +RM +G   ++  + G    +     ++    +++ T   +   +          L+ 
Sbjct  193  NVKRMSEGTGVISAPVVGGTSMQDDIIRVSNGVHVMVGTPGRIVDLVEKRVG----TLSK  248

Query  125  FSLIVVDEC  133
              ++V DE 
Sbjct  249  RVILVFDEA  257


>sp|O61305|DDX19_DROME DEAD-box helicase Dbp80 OS=Drosophila melanogaster 
OX=7227 GN=Dbp80 PE=1 SV=1
Length=460

 Score = 95.2 bits (235),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 55/358 (15%), Positives = 128/358 (36%), Gaps = 30/358 (8%)

Query  171  GTGGASKLDGAINHVLQLCANLDTWCIMSPQ-NCCPQLQEHSQQPCKQYNLCHRRSQDPF  229
            GTG  +    A+   + +C N      +SP      Q  E + +  +       R     
Sbjct  122  GTGKTAAFVLAMLSRVNVCLNHPQVLCLSPTYELAIQTGEVAARMGQFCREIKLRFAVRG  181

Query  230  GDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND  289
             ++ +    + H  +  P     +G +     + K+S    +  L E  V       ++ 
Sbjct  182  EEVDRSKKIEEHILIGTPGKLLDWGIKFRLFDMKKIS----VFVLDEADVMIATQGHHDQ  237

Query  290  ALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENP  349
             + IH  +     +      Y +E +   +++ A+  ++ L  + ++ L ++  +  +  
Sbjct  238  CIRIHKMLNPHCQMLFFSATYGKEVMDFARLIVADPTIIRLMREEES-LENIKQYYVKCK  296

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
              E     +Q  +   +  + IIF  T+++A  L   +                 G   +
Sbjct  297  NEEGKYNAIQNIYGCISVGQAIIFCHTKRTAAWLAAKMTSD--------------GHSVA  342

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE------I  463
              +  +T   + +V+ +F+ G   +L+ T++   G+DI    VVV + L  +        
Sbjct  343  VLTGDLTVVQRLDVLDRFRSGLEKVLITTNILSRGIDIEQLQVVVNFDLPVDLDGMADCE  402

Query  464  SMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA  520
            + +   GR  R  +S  A       + +K   +   +E    + +  +      + + 
Sbjct  403  TYLHRIGRTGRFGKSGIAINLITDEKTMK---VCSDIEKHFNKKIEVLNTDSADDIEK  457


 Score = 47.5 bits (111),  Expect = 3e-04, Method: Composition-based stats.
 Identities = 31/185 (17%), Positives = 58/185 (31%), Gaps = 22/185 (12%)

Query  18   KNIIIWLPTGAGKTRAAAYVAKRHLETV-DGAKVVVLVNRVHLVTQHGEEFRRMLDGRWT  76
            +N+I    +G GKT A        +    +  +V+ L     L  Q GE   RM      
Sbjct  113  QNMIAQSQSGTGKTAAFVLAMLSRVNVCLNHPQVLCLSPTYELAIQTGEVAARMGQFCRE  172

Query  77   VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC---  133
            +       G           H +LI T   L        +    ++   S+ V+DE    
Sbjct  173  IKLRFAVRGEEVDRSKKIEEH-ILIGTPGKLLD---WGIKFRLFDMKKISVFVLDEADVM  228

Query  134  -----HH--THKDT----VYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAI  182
                 HH    +       +   M  +     +      +++   A P      + + ++
Sbjct  229  IATQGHHDQCIRIHKMLNPHCQ-MLFFSATYGKEVMDFARLI--VADPTIIRLMREEESL  285

Query  183  NHVLQ  187
             ++ Q
Sbjct  286  ENIKQ  290


>sp|A1DNG2|DBP10_NEOFI ATP-dependent RNA helicase dbp10 OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 
/ FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dbp10 
PE=3 SV=1
Length=934

 Score = 96.8 bits (239),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 47/126 (37%), Gaps = 15/126 (12%)

Query  363  SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE  422
             S      I+F  T+     L   L +               G   S     + Q  ++ 
Sbjct  370  ESPTKHSTIVFAATKHHVDYLYSLLSEA--------------GFAVSYVYGSLDQTARKI  415

Query  423  VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF  481
             +Q F+ G  N+LV T VA  G+DIP    V+ Y   +     +   GR ARA +  +++
Sbjct  416  QVQNFRTGMTNILVVTDVAARGIDIPILANVINYDFPSQPKIFIHRVGRTARAGRKGWSY  475

Query  482  VATEGS  487
                 +
Sbjct  476  SLVRDA  481


 Score = 47.1 bits (110),  Expect = 5e-04, Method: Composition-based stats.
 Identities = 26/125 (21%), Positives = 49/125 (39%), Gaps = 8/125 (6%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRHLE---TVDGAKVVVLVNRVHLVTQHGEEFRRML  71
            ++ ++++    TG+GKT A        L+   T  GA+ ++L     L  Q  +  + + 
Sbjct  125  MDDQDVVGMARTGSGKTAAFVIPMIEKLKSHSTKVGARGLILSPSRELALQTLKVVKELG  184

Query  72   DG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV  130
             G       L G       F  +A   D++I T           + E +++L+    +V 
Sbjct  185  RGTDLKSVLLVGGDSLEEQFAMMAGNPDIVIATPGRFLH----LKVEMNLDLSSIRYVVF  240

Query  131  DECHH  135
            DE   
Sbjct  241  DEADR  245


>sp|P0CQ70|IF4A_CRYNJ ATP-dependent RNA helicase eIF4A OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=TIF1 PE=3 SV=1
Length=401

 Score = 94.5 bits (233),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 29/154 (19%), Positives = 64/154 (42%), Gaps = 19/154 (12%)

Query  315  VTKTQILCAERRLLALFDDRKNELAHLATH-GPENPKLEMLEKILQRQFSSSNSPRGIIF  373
            VTK  +    R L+   +     +     +   E  KLE L  +    + +    + +IF
Sbjct  218  VTKKFMRDPIRILVKKDELTLEGIRQFYINVEKEEWKLETLCDL----YETVTITQAVIF  273

Query  374  TRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN  433
              TR+    L   L  +Q                 S+    M Q +++ ++++F+ G+  
Sbjct  274  CSTRRKVDWLTQQLHDRQ--------------FTVSAMHGDMKQEEREVIMKEFRSGSSR  319

Query  434  LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
            +L+ T +   G+D+   ++V+ Y L +++ + + 
Sbjct  320  VLITTDLLARGIDVQQVSLVINYDLPSSKENYIH  353


 Score = 46.3 bits (108),  Expect = 6e-04, Method: Composition-based stats.
 Identities = 24/129 (19%), Positives = 44/129 (34%), Gaps = 6/129 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q   IMP + G++ I    +G GKT   +  + +R   TV   + +VL     L  Q  +
Sbjct  55   QQRAIMPIVTGRDCIAQAQSGTGKTATFSVSILQRIDTTVKKTQALVLAPTRELAQQIQK  114

Query  66   EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
                + D          G    R     L     +++ T   +   +        ++   
Sbjct  115  VVIALGDYLNVDCHACVGGTAVREDIARLNEGPHIVVGTPGRVFDMIN----RGALKTEA  170

Query  125  FSLIVVDEC  133
              +  +DE 
Sbjct  171  VMMFCLDEA  179


>sp|P0CQ71|IF4A_CRYNB ATP-dependent RNA helicase eIF4A OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=TIF1 PE=3 SV=1
Length=401

 Score = 94.5 bits (233),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 29/154 (19%), Positives = 64/154 (42%), Gaps = 19/154 (12%)

Query  315  VTKTQILCAERRLLALFDDRKNELAHLATH-GPENPKLEMLEKILQRQFSSSNSPRGIIF  373
            VTK  +    R L+   +     +     +   E  KLE L  +    + +    + +IF
Sbjct  218  VTKKFMRDPIRILVKKDELTLEGIRQFYINVEKEEWKLETLCDL----YETVTITQAVIF  273

Query  374  TRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN  433
              TR+    L   L  +Q                 S+    M Q +++ ++++F+ G+  
Sbjct  274  CSTRRKVDWLTQQLHDRQ--------------FTVSAMHGDMKQEEREVIMKEFRSGSSR  319

Query  434  LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
            +L+ T +   G+D+   ++V+ Y L +++ + + 
Sbjct  320  VLITTDLLARGIDVQQVSLVINYDLPSSKENYIH  353


 Score = 46.3 bits (108),  Expect = 6e-04, Method: Composition-based stats.
 Identities = 24/129 (19%), Positives = 44/129 (34%), Gaps = 6/129 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q   IMP + G++ I    +G GKT   +  + +R   TV   + +VL     L  Q  +
Sbjct  55   QQRAIMPIVTGRDCIAQAQSGTGKTATFSVSILQRIDTTVKKTQALVLAPTRELAQQIQK  114

Query  66   EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
                + D          G    R     L     +++ T   +   +        ++   
Sbjct  115  VVIALGDYLNVDCHACVGGTAVREDIARLNEGPHIVVGTPGRVFDMIN----RGALKTEA  170

Query  125  FSLIVVDEC  133
              +  +DE 
Sbjct  171  VMMFCLDEA  179


>sp|Q9VNV3|DDX1_DROME ATP-dependent RNA helicase Ddx1 OS=Drosophila 
melanogaster OX=7227 GN=Ddx1 PE=2 SV=1
Length=727

 Score = 96.4 bits (238),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 34/148 (23%), Positives = 61/148 (41%), Gaps = 19/148 (13%)

Query  342  ATHGPENPK--LEMLEKILQRQF-----SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQ  394
              H   + K  L    K+L+ ++        N  R IIF RT+Q   +L  +L+Q+ G  
Sbjct  473  NVHPGNHSKETLSQAVKLLKGEYCVHAIDKHNMDRAIIFCRTKQDCDNLERFLRQRGGKH  532

Query  395  TVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV  454
               +                   ++++E ++ F+   +  L+ T VA  GLDI     ++
Sbjct  533  YSCV-----------CLHGDRKPQERKENLEMFKRQQVKFLICTDVAARGLDITGLPFMI  581

Query  455  RYGLLTNEISMVQARGR-ARADQSVYAF  481
               L  ++ + V   GR  RA++   A 
Sbjct  582  NVTLPDDKTNYVHRIGRVGRAERMGLAI  609


>sp|A3LX02|SPB4_PICST ATP-dependent rRNA helicase SPB4 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=SPB4 PE=3 SV=2
Length=617

 Score = 96.0 bits (237),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 59/356 (17%), Positives = 116/356 (33%), Gaps = 19/356 (5%)

Query  194  TWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKF  253
               I S  N   +     + P K   L    S     DL + L D+ H  +  P     F
Sbjct  106  ASQIQSVFNNVIEYLPEDKIPIKTQLLVGSLSTVR-DDLDRFLKDKPHILIATPGRMLDF  164

Query  254  GTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHRE  313
             +  Y    VK++        +  ++      +    +L     +    L +        
Sbjct  165  MSSQY----VKMNSVEIAILDEADKLLDFSFEKDVVNILKRLPKQRRTGLFSATISAAGN  220

Query  314  HVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIF  373
             + +  +    +  +       N             + E     L +        + I++
Sbjct  221  TIFRAGMNNPVKVAVKSKSTTANSAPSALHISYLMIEPEKKITTLIKLLHDYRYKKCIVY  280

Query  374  TRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTL-  432
              T  S        Q+           +        S    +  + +   +Q F DG + 
Sbjct  281  FPTCTSVKHFYSIFQKIVNGNDNTESFKFY------SLHGQLATKPRLRTLQSFTDGDVA  334

Query  433  ---NLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGS  487
               ++L+ T VA  G+DIP  ++V++    T+    +   GR  RA++   A  +  +GS
Sbjct  335  LNKHILMTTDVAARGIDIPDVDLVIQLDPPTDPDVFLHRCGRTGRANKVGRAIVMLNDGS  394

Query  488  RELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQ  543
            REL      E     M++       ++Q+++Q     L++  L  RA      ++ 
Sbjct  395  RELDYVDFMEVKGVAMQEMPTP--DLNQSDHQQFQDKLRKYMLDDRARHEIAIKSY  448


 Score = 42.9 bits (99),  Expect = 0.009, Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 49/140 (35%), Gaps = 28/140 (20%)

Query  18   KNIIIWLPTGAGKTR---AAAY--VAKRHLETVDGAKV-----------VVLVNRVHLVT  61
            K++++   TG+GKT          V+ R  ++ +  +            +VL     L +
Sbjct  48   KDVVVEAVTGSGKTLAFAIPVLQKVSNRLYDSQEEGEAPEKVKQGHMLAIVLSPTRELAS  107

Query  62   QHGEEFRRML------DGRWTVTTLSGDMGPRAGFGH--LARCHDLLICTAELLQMALTS  113
            Q    F  ++              L G +          L     +LI T   +   ++S
Sbjct  108  QIQSVFNNVIEYLPEDKIPIKTQLLVGSLSTVRDDLDRFLKDKPHILIATPGRMLDFMSS  167

Query  114  PEEEEHVELTVFSLIVVDEC  133
                ++V++    + ++DE 
Sbjct  168  ----QYVKMNSVEIAILDEA  183


>sp|A7EIX7|SUB2_SCLS1 ATP-dependent RNA helicase sub2 OS=Sclerotinia 
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 
GN=sub2 PE=3 SV=1
Length=444

 Score = 94.9 bits (234),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 65/175 (37%), Gaps = 22/175 (13%)

Query  338  LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD  397
            L        E  K   L ++L       +  + IIF ++   A  L   L++        
Sbjct  278  LQQYYIKLEEREKNRRLNELLDEL----SFNQVIIFVKSTVRATELDKLLRECNFPSV--  331

Query  398  IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG  457
                        +  + ++Q ++ +    F+D    + VAT V   G+D+   N+ + Y 
Sbjct  332  ------------AIHSGVSQEERIKRFNDFKDFNKRICVATDVFGRGIDVNKINLAINYD  379

Query  458  LLTNEISMVQARGRARADQS---VYAFVATEGSRELKRELINEALETLMEQAVAA  509
            L  +  S +   GRA    +     +FV+ E  +E+ +  + +  E  + +    
Sbjct  380  LPPDADSYLHRVGRAGRFGTKGLAISFVSNEADQEVLKA-VEKRFEVALPEYPEG  433


 Score = 44.4 bits (103),  Expect = 0.003, Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 54/134 (40%), Gaps = 12/134 (9%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG-AKVVVLVNRVHLVTQHGE  65
            Q   I  A+ G +++    +G GKT        + +E V G   V+V+ +   L  Q   
Sbjct  86   QQVCIPQAILGTDVLCQAKSGLGKTAVFVLTTLQQVEVVAGETSVLVMCHTRELAYQIRN  145

Query  66   EFR--RMLDGRWTVTTLSGDMGPRAGFGHLARCHD----LLICTAELLQMALTSPEEEEH  119
            E++          +    G + P +    + +  +    +++ T   L  AL     +++
Sbjct  146  EYQRFCHFMPDVKIGVFYGGV-PISKDVEVLKNPETHPHIIVGTPGRL-NAL---VRDKY  200

Query  120  VELTVFSLIVVDEC  133
            + L    + V+DEC
Sbjct  201  LRLNSVKVFVLDEC  214


>sp|Q02748|IF4A_DROME Eukaryotic initiation factor 4A OS=Drosophila 
melanogaster OX=7227 GN=eIF4A PE=1 SV=3
Length=403

 Score = 94.5 bits (233),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 55/121 (45%), Gaps = 18/121 (15%)

Query  347  ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA  406
            EN KL  L  +    + + +  + +IF  TR+    L       Q +   +     + G 
Sbjct  253  ENWKLGTLCDL----YDTLSITQSVIFCNTRRKVDQLT------QEMSIHNFTVSAMHG-  301

Query  407  GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV  466
                    M QRD++ ++++F+ G+  +L+ T +   G+D+   ++V+ Y L +N  + +
Sbjct  302  -------DMEQRDREVIMKQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYI  354

Query  467  Q  467
             
Sbjct  355  H  355


 Score = 51.3 bits (121),  Expect = 2e-05, Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 44/129 (34%), Gaps = 6/129 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQ-HG  64
            Q   I+P + G+++I    +G GKT   +  + ++   ++   + ++L     L TQ   
Sbjct  57   QQRAIIPCVRGRDVIAQAQSGTGKTATFSIAILQQIDTSIRECQALILAPTRELATQIQR  116

Query  65   EEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
                     +       G    R     L     +++ T   +   +        +    
Sbjct  117  VVMALGEYMKVHSHACIGGTNVREDARILESGCHVVVGTPGRVYDMINRKV----LRTQY  172

Query  125  FSLIVVDEC  133
              L V+DE 
Sbjct  173  IKLFVLDEA  181


>sp|A9IR19|UVRB_BORPD UvrABC system protein B OS=Bordetella petrii 
(strain ATCC BAA-461 / DSM 12804 / CCUG 43448) OX=340100 
GN=uvrB PE=3 SV=1
Length=675

 Score = 96.0 bits (237),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 87/564 (15%), Positives = 179/564 (32%), Gaps = 114/564 (20%)

Query  26   TGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTVTTLS----  81
            TG+GKT   A +  R      G   +VL     L  Q   E R           +S    
Sbjct  50   TGSGKTYTMANIIARL-----GRPALVLAPNKTLAAQLYAEMREFFPKNAVEYFVSYYDY  104

Query  82   ------------------------GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE  117
                                      M   A    L R   +++ T   +       +  
Sbjct  105  YQPEAYVPTRDLFIEKDSSINEHIEQMRLSATKSLLERRDTVIVGTVSCIYGIGNPGDYH  164

Query  118  EHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASK  177
              V +      +      + ++ +  ++  QY       A+   +V G T       + +
Sbjct  165  AMVLILRAGDRI------SRREVLARLVAMQYTRNDADFARGTFRVRGETLDIFPAESPE  218

Query  178  LDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLM  237
            L   +        +L+ +  ++ +     +++   +        +   +D     ++ + 
Sbjct  219  LALRLTLFDDEIESLELFDPLTGR-----VRQKVPRFTVYPGSHYVTPRDTVLRAIETIK  273

Query  238  DQIHDHLEMPELSRKF-GTQMYEQQVVKLSEAAALAGLQEQ-RVYALHLRRYND------  289
            +++ D L++     K    Q  EQ+     E     G  +    Y+ HL           
Sbjct  274  EELRDRLKLLTAEGKLVEAQRLEQRTRFDLEMLQELGFCKGIENYSRHLSGAAPGEPPPT  333

Query  290  --ALLIHDTVRAVDA----LAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLAT  343
                L  D +  +D     +  L   Y  +   K  ++    RL +  D+R   L     
Sbjct  334  LIDYLPADALMFIDESHVTMGQLGGMYRGDRARKETLVQYGFRLPSALDNRPLRLEEFEA  393

Query  344  H------------------------------GPENPKLEM------LEKILQR-QFSSSN  366
                                           G  +P++E+      ++ +L   +   + 
Sbjct  394  RMRQCVFVSATPAAYEQEHSDNVVEQVVRPTGLVDPQVEVRPARTQVDDLLGEIKLRVAA  453

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
              R ++ T T++ A  L  +L +               G       + +   ++ E+I+ 
Sbjct  454  QERVLVTTLTKRMAEDLTDFLAE--------------HGVRVRYLHSDIDTVERVEIIRD  499

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + GT ++LV  ++  EGLDIP  ++V          L +E S++Q  GRA  + + +A 
Sbjct  500  LRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGHAI  559

Query  482  VATEGSRELKRELINEALETLMEQ  505
            +  +      R  ++E      +Q
Sbjct  560  LYADAITASMRRAMDETERRRTKQ  583


>sp|Q0CMM8|DBP10_ASPTN ATP-dependent RNA helicase dbp10 OS=Aspergillus 
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=dbp10 
PE=3 SV=1
Length=928

 Score = 96.4 bits (238),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 45/271 (17%), Positives = 90/271 (33%), Gaps = 29/271 (11%)

Query  218  YNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQ  277
            ++   R  +  F   L +++  +    +    S      + E     L E   +    E 
Sbjct  239  FDEADRLFEMGFAAQLTEILHGLPTTRQTLLFSATLPKSLVEFARAGLQEPTLIRLDTES  298

Query  278  RVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNE  337
            ++       +        +V++ D   AL    H       ++      +     + K  
Sbjct  299  KISPDLQNAFF-------SVKSADKEGALLYILH----EVIKMPTGPTEVAQRLQEEKAN  347

Query  338  LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD  397
                 +   +  K   ++K +  + S +     I+F  T+     L   L++        
Sbjct  348  SKD--SKNSKKRKRSEMDKAVNMKESPTKHS-TIVFAATKHHVDYLYSLLREA-------  397

Query  398  IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG  457
                   G   S     + Q  ++  +  F+ G  N+LV T VA  G+DIP    V+ Y 
Sbjct  398  -------GFAVSYAYGSLDQTARKIQVNNFRTGLSNILVVTDVAARGIDIPILANVINYD  450

Query  458  LLTNEISMVQARGR-ARADQSVYAFVATEGS  487
              +     V   GR ARA +  +++     +
Sbjct  451  FPSQPKIFVHRVGRTARAGRKGWSYSLVRDA  481


 Score = 47.5 bits (111),  Expect = 5e-04, Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 42/114 (37%), Gaps = 8/114 (7%)

Query  26   TGAGKTRAAAYVAKRHLETVDGA---KVVVLVNRVHLVTQHGEEFRRMLDG-RWTVTTLS  81
            TG+GKT A        L++       + ++L     L  Q  +  + +  G       L 
Sbjct  135  TGSGKTAAFVIPMIEKLKSHSSKFGARGLILSPSRELALQTLKVVKELGKGTDLKSVLLV  194

Query  82   GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH  135
            G       FG +A   D++I T           + E +++L+    +V DE   
Sbjct  195  GGDSLEEQFGMMAGNPDIVIATPGRFLH----LKVEMNLDLSSIRYVVFDEADR  244


>sp|Q86B47|Y8611_DROME Probable ATP-dependent RNA helicase CG8611 
OS=Drosophila melanogaster OX=7227 GN=CG8611 PE=1 SV=1
Length=975

 Score = 96.4 bits (238),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 78/418 (19%), Positives = 140/418 (33%), Gaps = 37/418 (9%)

Query  141  VYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCI---  197
             Y + + + L+ +  R Q    VL L   P      +    I  +++    +    +   
Sbjct  381  AYALPLVELLQKQQPRIQRKDGVLALVIVPTRELVMQTYELIQKLVKPYTWIVPGSLLGG  440

Query  198  MSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI-------------HDHL  244
             S ++   +L++                       L KL   I              D  
Sbjct  441  ESRKSEKARLRKGINILIGTPGRLVDHLLHTASFKLTKLQFLILDEADRLLELGYERDVK  500

Query  245  EMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALA  304
            ++ E   K   +  ++++ +L      A L  Q      L   N   + +    A  AL 
Sbjct  501  QLVEAIDKQRAECEDKELPQLQRMLLSATLTSQVQQLAGLTLKNPLYIDNSDEAASAALK  560

Query  305  ALQDFYHREHVTKTQI----LCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQR  360
            + +D Y +E +         L   +  +         L       P   +L  L  +L +
Sbjct  561  S-KDGYQKETIEALLEVDDGLGEYQEDVTGVLSIPENLQLSYVVVPPKLRLVALSSLLAK  619

Query  361  QFSSS-NSPRGIIFTRTRQSA----HSLLLWL---------QQQQGLQTVDIRAQLLIGA  406
            +  +S    + I+F  T +        L   L         +Q++G    D    LL G 
Sbjct  620  EVDASPKQFKAIVFMSTTEMVNFHHDMLNEALTRRVLDEEDEQEKGDSDDDGDIPLLQGL  679

Query  407  GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV  466
                    MTQ ++Q V + F+D    +L+AT V   G+D+P   +VV+Y         V
Sbjct  680  RFFKLHGSMTQTERQGVFRGFRDCASCVLLATDVVGRGIDVPDIKLVVQYTPPQTTADFV  739

Query  467  QARGR-ARADQSVYA-FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKI  522
               GR ARA +   A    T    +  R L  + +        A +Q +   + +A+ 
Sbjct  740  HRVGRTARAGRKGRAVLFLTPSEAQFVRHLEKKRIRIQQGDMYAYLQTLLPKDDEART  797


 Score = 60.6 bits (145),  Expect = 4e-08, Method: Composition-based stats.
 Identities = 33/138 (24%), Positives = 57/138 (41%), Gaps = 12/138 (9%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLET-------VDGAKVVVLVNRVHL  59
            Q + I   L+GK++++   TG+GKT A A      L+         DG   +V+V    L
Sbjct  355  QQKTIPEVLQGKDVLVRSQTGSGKTLAYALPLVELLQKQQPRIQRKDGVLALVIVPTREL  414

Query  60   VTQHGEEFRRMLDG--RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE  117
            V Q  E  ++++         +L G    ++    L +  ++LI T   L   L      
Sbjct  415  VMQTYELIQKLVKPYTWIVPGSLLGGESRKSEKARLRKGINILIGTPGRLVDHLL---HT  471

Query  118  EHVELTVFSLIVVDECHH  135
               +LT    +++DE   
Sbjct  472  ASFKLTKLQFLILDEADR  489


>sp|A1CTZ6|DBP10_ASPCL ATP-dependent RNA helicase dbp10 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / 
NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=dbp10 PE=3 
SV=1
Length=935

 Score = 96.4 bits (238),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 47/126 (37%), Gaps = 15/126 (12%)

Query  363  SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE  422
             S      I+F  T+     L   L +               G   S     + Q  ++ 
Sbjct  369  ESPTQHSTIVFAATKHHVDYLYSLLHEA--------------GFAVSYVYGALDQTARKI  414

Query  423  VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF  481
             +Q F+ G  N+LV T VA  G+DIP    V+ Y   +     +   GR ARA +  +++
Sbjct  415  QVQNFRSGLSNILVVTDVAARGIDIPILANVINYDFPSQPKIFIHRVGRTARAGRKGWSY  474

Query  482  VATEGS  487
                 +
Sbjct  475  SLVRDA  480


 Score = 45.6 bits (106),  Expect = 0.001, Method: Composition-based stats.
 Identities = 26/125 (21%), Positives = 47/125 (38%), Gaps = 8/125 (6%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRHLE---TVDGAKVVVLVNRVHLVTQHGEEFRRML  71
            ++ ++++    TG+GKT A        L    T  GA+ ++L     L  Q  +  + + 
Sbjct  124  MDDQDVVGMARTGSGKTAAFVIPMIEKLRSHSTKVGARGLILSPSRELALQTLKVVKELG  183

Query  72   DG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV  130
             G       L G       F  +A   D++I T           + E +++L     +V 
Sbjct  184  KGTDLKCVLLVGGDSLEEQFTMMAGNPDIVIATPGRFLH----LKVEMNLDLYSIRYVVF  239

Query  131  DECHH  135
            DE   
Sbjct  240  DEADR  244


>sp|Q2UHC1|DBP10_ASPOR ATP-dependent RNA helicase dbp10 OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=dbp10 
PE=3 SV=1
Length=929

 Score = 96.4 bits (238),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 30/126 (24%), Positives = 48/126 (38%), Gaps = 15/126 (12%)

Query  363  SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE  422
             S      I+F  T+     L   L++               G   S     + Q  ++ 
Sbjct  368  ESPTKYSTIVFAATKHHVDYLYSLLREA--------------GFAVSYAYGSLDQTARKI  413

Query  423  VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF  481
             +Q F+ G  N+LV T VA  G+DIP    V+ Y   +     V   GR ARA +  +++
Sbjct  414  QVQNFRAGLSNILVVTDVAARGIDIPILANVINYDFPSQPKIFVHRVGRTARAGRKGWSY  473

Query  482  VATEGS  487
                 +
Sbjct  474  SLVRDA  479


 Score = 48.3 bits (113),  Expect = 3e-04, Method: Composition-based stats.
 Identities = 27/125 (22%), Positives = 50/125 (40%), Gaps = 8/125 (6%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRHLE---TVDGAKVVVLVNRVHLVTQHGEEFRRML  71
            ++G++++    TG+GKT A        L+   T  GA+ ++L     L  Q  +  + + 
Sbjct  124  MDGQDVVGMARTGSGKTAAFVIPMIEKLKSHSTKVGARGLILSPSRELALQTLKVVKELG  183

Query  72   DG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV  130
             G       L G       F  +A   D++I T           + E +++L+    +V 
Sbjct  184  KGTDLKSVLLVGGDSLEEQFSLMAGNPDIVIATPGRFLH----LKVEMNLDLSSIRYVVF  239

Query  131  DECHH  135
            DE   
Sbjct  240  DEADR  244


>sp|Q9UMR2|DD19B_HUMAN ATP-dependent RNA helicase DDX19B OS=Homo 
sapiens OX=9606 GN=DDX19B PE=1 SV=1
Length=479

 Score = 94.9 bits (234),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 68/183 (37%), Gaps = 31/183 (17%)

Query  345  GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI  404
               + K + L  +    + +    + +IF  TR++A  L   L ++              
Sbjct  315  SSRDEKFQALCNL----YGAITIAQAMIFCHTRKTASWLAAELSKE--------------  356

Query  405  GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL-----  459
            G   +  S  M    +  VI++F++G   +LV T+V   G+D+   +VV+ + L      
Sbjct  357  GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDG  416

Query  460  -TNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAE  517
              +  + +   GR  R  +   A    +    +        L  + E     ++++D  +
Sbjct  417  NPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSM------NILNRIQEHFNKKIERLDTDD  470

Query  518  YQA  520
               
Sbjct  471  LDE  473


 Score = 47.1 bits (110),  Expect = 4e-04, Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 5/117 (4%)

Query  18   KNIIIWLPTGAGKTRAAAYVAKRHLETVDG-AKVVVLVNRVHLVTQHGEEFRRMLDGRWT  76
            +N+I    +G GKT A        +E  +   + + L     L  Q G+   +M      
Sbjct  132  QNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPE  191

Query  77   VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC  133
            +       G +   G       ++I T   +        + + ++     + V+DE 
Sbjct  192  LKLAYAVRGNKLERGQKISE-QIVIGTPGTVLD---WCSKLKFIDPKKIKVFVLDEA  244


>sp|Q7S9J4|DBP10_NEUCR ATP-dependent RNA helicase dbp-10 OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 
/ DSM 1257 / FGSC 987) OX=367110 GN=dbp-10 PE=3 SV=1
Length=934

 Score = 96.0 bits (237),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 52/315 (17%), Positives = 92/315 (29%), Gaps = 58/315 (18%)

Query  179  DGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNL---CHRRSQDPFGDLLKK  235
            D        + +N D       +    +++ +      +Y +     R  +  F   L +
Sbjct  207  DSLEEQFGMMASNPDIIIATPGRFLHLKVEMNLSLASIKYVVFDEADRLFEMGFATELTE  266

Query  236  LMDQIHDHLEMPELSRKF--------GTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRY  287
            ++  +    +    S              + E  +V+L     ++   E   +A+     
Sbjct  267  ILHALPPSRQTLLFSATLPSSLVEFARAGLQEPSLVRLDAETKVSPDLESAFFAVKGGEK  326

Query  288  NDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPE  347
              ALL          L   +         + +    E R                     
Sbjct  327  EGALLHLLHDVIKVPLGPPEGTKEESDELQARKRKREYR--------------------P  366

Query  348  NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG  407
            NPK                    IIFT T+     +   L+              L G  
Sbjct  367  NPK------------EKPTEYSTIIFTATKHHVEYIANLLK--------------LAGFA  400

Query  408  NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
             S     + Q  +   +  F+ G  ++LV T VA  G+D+P    V+ Y   +     V 
Sbjct  401  VSYVYGSLDQTARLIQVDNFRRGRTHILVVTDVAARGIDMPALANVINYDFPSQPKIFVH  460

Query  468  ARGR-ARADQSVYAF  481
              GR ARA Q  +A+
Sbjct  461  RVGRTARAGQRGWAY  475


 Score = 49.0 bits (115),  Expect = 2e-04, Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 48/125 (38%), Gaps = 8/125 (6%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVD---GAKVVVLVNRVHLVTQHGEEFRRML  71
            LE K+++    TG+GKT A        L+      G++ +++     L  Q  +  + + 
Sbjct  134  LERKDVVGMARTGSGKTAAFVIPMIERLKGHSPRVGSRALIMSPSRELALQTLKVVKELG  193

Query  72   DGRWTVT-TLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV  130
             G    T  L G       FG +A   D++I T           + E ++ L     +V 
Sbjct  194  RGTDLKTVLLVGGDSLEEQFGMMASNPDIIIATPGRFLH----LKVEMNLSLASIKYVVF  249

Query  131  DECHH  135
            DE   
Sbjct  250  DEADR  254


>sp|A4REU9|MAK5_PYRO7 ATP-dependent RNA helicase MAK5 OS=Pyricularia 
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 
GN=MAK5 PE=3 SV=2
Length=760

 Score = 96.0 bits (237),  Expect = 4e-19, Method: Composition-based stats.
 Identities = 54/324 (17%), Positives = 97/324 (30%), Gaps = 37/324 (11%)

Query  165  GLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRR  224
            GL  SP     +          QL        ++       ++   S +  + +      
Sbjct  294  GLATSPYVCSVTGGLSVHKQQRQLE---KADIVVGTPGRLWEVLSSSTKLIQAFRGIKFL  350

Query  225  SQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHL  284
              D    LL +      D  ++ E   K  T           +   + G + ++      
Sbjct  351  VVDEADRLLSE--GHFKDAKDIFEGLDKVETD----------DDGIIRGGKARQTLVFSA  398

Query  285  RRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATH  344
                            D     Q   +     K +    +   +         L      
Sbjct  399  TFNKGLQQKLAGKGRFDLATDSQSMEYLLKKLKFREEIPKFIDVNPVSQMAEGLKEGIVE  458

Query  345  GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI  404
                 K   L  +L        + R ++FT +  S   L   LQQ               
Sbjct  459  CGAMEKDLYLYSLLLMH----PTQRTLVFTNSISSVRRLTPMLQQLTLPVI---------  505

Query  405  GAGNSSQSTHMTQRDQQEVIQKF---QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN  461
                 +  + M Q+ +   +++F   + G+ ++L+AT VA  GLDI   +VV+ Y +   
Sbjct  506  -----ALHSQMIQKARLRSVERFTSSKPGSASILIATDVAARGLDIRGIDVVIHYHVPRT  560

Query  462  EISMVQARGR-ARADQSVYAFVAT  484
              + V   GR ARAD S  + +  
Sbjct  561  ADAYVHRSGRTARADSSGLSILIC  584


 Score = 41.7 bits (96),  Expect = 0.022, Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 48/138 (35%), Gaps = 19/138 (14%)

Query  15   LEGKNIIIWLPTGAGKTRA-------------AAYVAKRHLETVDGAKV-VVLVNRVHLV  60
            L G +++    TG+GKT A             A+  +KR  E      + +VL     L 
Sbjct  222  LAGHDVVGKASTGSGKTLAFGIPIVEKWLSINASTQSKRVAEGETKTPIALVLSPTRELA  281

Query  61   TQ---HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE  117
             Q   H +     L     V +++G +             D+++ T   L   L+S  + 
Sbjct  282  HQLTDHIKNLCAGLATSPYVCSVTGGLSVHKQ-QRQLEKADIVVGTPGRLWEVLSSSTKL  340

Query  118  EHVELTVFSLIVVDECHH  135
                      +VVDE   
Sbjct  341  -IQAFRGIKFLVVDEADR  357


>sp|A2QRY2|DBP10_ASPNC ATP-dependent RNA helicase dbp10 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=dbp10 PE=3 SV=1
Length=932

 Score = 96.0 bits (237),  Expect = 4e-19, Method: Composition-based stats.
 Identities = 31/126 (25%), Positives = 47/126 (37%), Gaps = 15/126 (12%)

Query  363  SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE  422
             S      IIF  T+     L   L +               G   S     + Q  ++ 
Sbjct  370  ESPTKHSTIIFAATKHHVDYLYSLLNEA--------------GFATSYAYGSLDQTARKI  415

Query  423  VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF  481
             +  F+ G  N+LV T VA  G+DIP    V+ Y   +     V   GR ARA ++ +++
Sbjct  416  QVHNFRTGISNILVVTDVAARGIDIPILANVINYDFPSQAKIFVHRVGRTARAGRTGWSY  475

Query  482  VATEGS  487
                 S
Sbjct  476  SLVRDS  481


 Score = 47.5 bits (111),  Expect = 5e-04, Method: Composition-based stats.
 Identities = 26/125 (21%), Positives = 50/125 (40%), Gaps = 8/125 (6%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVD---GAKVVVLVNRVHLVTQHGEEFRRML  71
            +E ++++    TG+GKT A      + L++     GA+ ++L     L  Q  +  + + 
Sbjct  125  MEDQDVVGMARTGSGKTAAFVIPMIQKLKSHSTQVGARGLILSPSRELALQTLKVVKELG  184

Query  72   DG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV  130
             G       L G       F  +A   D++I T           + E +++L+    +V 
Sbjct  185  KGTDLKAVLLVGGDSLEEQFSMMAGNPDIVIATPGRFLH----LKVEMNLDLSSIRYVVF  240

Query  131  DECHH  135
            DE   
Sbjct  241  DEADR  245


>sp|Q9SF41|RH45_ARATH DEAD-box ATP-dependent RNA helicase 45 OS=Arabidopsis 
thaliana OX=3702 GN=RH45 PE=3 SV=1
Length=989

 Score = 96.0 bits (237),  Expect = 4e-19, Method: Composition-based stats.
 Identities = 35/144 (24%), Positives = 60/144 (42%), Gaps = 3/144 (2%)

Query  387  LQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLD  446
            L + +       R   L+G         +  R Q++ I  F+    NLL+ATSVA  GLD
Sbjct  620  LVEIRPESERFSRLLELLGEWYEKGKVLVFVRSQEKSISDFKSDVCNLLIATSVAARGLD  679

Query  447  IPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLME  504
            +    +VV +    +    V   GR  RA +   A    +E   +   +L+ +ALE   +
Sbjct  680  VKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDLV-KALELSEQ  738

Query  505  QAVAAVQKMDQAEYQAKIRDLQQA  528
                 V+ + +       + ++QA
Sbjct  739  PVPDDVKAVAEGFMAKVKQGIEQA  762


 Score = 61.0 bits (146),  Expect = 3e-08, Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 51/136 (38%), Gaps = 8/136 (6%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKV------VVLVNRVHLV  60
            Q + +   + G++ I    TG+GKT        RH++     +       +V+     LV
Sbjct  423  QAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELV  482

Query  61   TQHGEEFRRMLDGRWTVTT-LSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
             Q   + R+       +   + G  G       L R  ++++CT   +   L +   +  
Sbjct  483  QQIYSDIRKFSKALGIICVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGK-I  541

Query  120  VELTVFSLIVVDECHH  135
              L   + +V+DE   
Sbjct  542  TNLRRVTYLVMDEADR  557


>sp|Q9NUU7|DD19A_HUMAN ATP-dependent RNA helicase DDX19A OS=Homo 
sapiens OX=9606 GN=DDX19A PE=1 SV=1
Length=478

 Score = 94.5 bits (233),  Expect = 4e-19, Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 68/183 (37%), Gaps = 31/183 (17%)

Query  345  GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI  404
               + K + L  +    + +    + +IF  TR++A  L   L ++              
Sbjct  314  SSRDEKFQALCNL----YGAITIAQAMIFCHTRKTASWLAAELSKE--------------  355

Query  405  GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL-----  459
            G   +  S  M    +  VI++F++G   +LV T+V   G+D+   +VV+ + L      
Sbjct  356  GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDG  415

Query  460  -TNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAE  517
              +  + +   GR  R  +   A    +    +        L  + E     ++++D  +
Sbjct  416  NPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSM------NILNRIQEHFNKKIERLDTDD  469

Query  518  YQA  520
               
Sbjct  470  LDE  472


 Score = 47.1 bits (110),  Expect = 5e-04, Method: Composition-based stats.
 Identities = 21/117 (18%), Positives = 40/117 (34%), Gaps = 5/117 (4%)

Query  18   KNIIIWLPTGAGKTRAAAYVAKRHLETVDG-AKVVVLVNRVHLVTQHGEEFRRMLDGRWT  76
            +N+I    +G GKT A        +E  D   + + L     L  Q G+   +M      
Sbjct  131  QNLIAQSQSGTGKTAAFVLAMLSRVEPSDRYPQCLCLSPTYELALQTGKVIEQMGKFYPE  190

Query  77   VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC  133
            +       G +   G       ++I T   +        + + ++     + V+DE 
Sbjct  191  LKLAYAVRGNKLERGQKISE-QIVIGTPGTVLD---WCSKLKFIDPKKIKVFVLDEA  243


>sp|Q61655|DD19A_MOUSE ATP-dependent RNA helicase DDX19A OS=Mus 
musculus OX=10090 GN=Ddx19a PE=1 SV=2
Length=478

 Score = 94.5 bits (233),  Expect = 4e-19, Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 67/183 (37%), Gaps = 31/183 (17%)

Query  345  GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI  404
                 K + L  +    + +    + +IF  TR++A  L   L ++              
Sbjct  314  NNREEKFQALCNL----YGAITIAQAMIFCHTRKTASWLAAELSKE--------------  355

Query  405  GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL-----  459
            G   +  S  M    +  VI++F++G   +LV T+V   G+D+   +VV+ + L      
Sbjct  356  GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDG  415

Query  460  -TNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAE  517
              +  + +   GR  R  +   A    +    +        L  + E     ++++D  +
Sbjct  416  NPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSM------NILNRIQEHFNKKIERLDTDD  469

Query  518  YQA  520
               
Sbjct  470  LDE  472


 Score = 47.1 bits (110),  Expect = 4e-04, Method: Composition-based stats.
 Identities = 21/117 (18%), Positives = 40/117 (34%), Gaps = 5/117 (4%)

Query  18   KNIIIWLPTGAGKTRAAAYVAKRHLETVDG-AKVVVLVNRVHLVTQHGEEFRRMLDGRWT  76
            +N+I    +G GKT A        +E  D   + + L     L  Q G+   +M      
Sbjct  131  QNLIAQSQSGTGKTAAFVLAMLSRVEPADRYPQCLCLSPTYELALQTGKVIEQMGKFHPE  190

Query  77   VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC  133
            +       G +   G       ++I T   +        + + ++     + V+DE 
Sbjct  191  LKLAYAVRGNKLERGQKVSE-QIVIGTPGTVLD---WCSKLKFIDPKKIKVFVLDEA  243


>sp|Q5UQD1|YR458_MIMIV Putative ATP-dependent RNA helicase R458 
OS=Acanthamoeba polyphaga mimivirus OX=212035 GN=MIMI_R458 
PE=3 SV=1
Length=524

 Score = 94.9 bits (234),  Expect = 5e-19, Method: Composition-based stats.
 Identities = 25/142 (18%), Positives = 58/142 (41%), Gaps = 16/142 (11%)

Query  355  EKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH  414
            ++I+          + IIF    ++A+ +   L +Q+    V I + +  G         
Sbjct  371  KEIILDLLKQCRIAQAIIFANRIETANEIKKLLDEQE----VPISSAVFHG--------D  418

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR---  471
            +    ++ + + F +  + LL++T +   GLD+   NVV  + +     + +   GR   
Sbjct  419  LPAVTRKNIHKDFVENKIRLLISTDLTSRGLDVQGINVVFNFDMPDTLETYIHRVGRSGR  478

Query  472  -ARADQSVYAFVATEGSRELKR  492
              R   S+   +  +   E+++
Sbjct  479  YGRKGVSISLILVNQNKNEMEK  500


>sp|Q8NJM2|DBP10_ASPFU ATP-dependent RNA helicase dbp10 OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC 
A1100 / Af293) OX=330879 GN=dbp10 PE=3 SV=1
Length=869

 Score = 95.6 bits (236),  Expect = 5e-19, Method: Composition-based stats.
 Identities = 30/126 (24%), Positives = 47/126 (37%), Gaps = 15/126 (12%)

Query  363  SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE  422
             S      I+F  T+     L   L +               G   S     + Q  ++ 
Sbjct  350  ESPTKHSTIVFAATKHHVDYLYSLLCEA--------------GFAVSYVYGSLDQTARKI  395

Query  423  VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF  481
             +Q F+ G  N+LV T VA  G+DIP    V+ Y   +     V   GR ARA +  +++
Sbjct  396  QVQNFRTGMTNILVVTDVAARGIDIPILANVINYDFPSQPKIFVHRVGRTARAGRKGWSY  455

Query  482  VATEGS  487
                 +
Sbjct  456  SLVRDA  461


 Score = 47.9 bits (112),  Expect = 3e-04, Method: Composition-based stats.
 Identities = 27/125 (22%), Positives = 49/125 (39%), Gaps = 8/125 (6%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRHLE---TVDGAKVVVLVNRVHLVTQHGEEFRRML  71
            ++ ++++    TG+GKT A        L+   T  GA+ +VL     L  Q  +  + + 
Sbjct  105  MDDQDVVGMARTGSGKTAAFVIPMIEKLKSHSTKVGARGLVLSPSRELALQTLKVVKELG  164

Query  72   DG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV  130
             G       L G       F  +A   D++I T           + E +++L+    +V 
Sbjct  165  RGTDLKSVLLVGGDSLEEQFAMIAGNPDIIIATPGRFLH----LKVEMNLDLSSIRYVVF  220

Query  131  DECHH  135
            DE   
Sbjct  221  DEADR  225


>sp|O76743|GLH4_CAEEL ATP-dependent RNA helicase glh-4 OS=Caenorhabditis 
elegans OX=6239 GN=glh-4 PE=1 SV=2
Length=1156

 Score = 96.0 bits (237),  Expect = 5e-19, Method: Composition-based stats.
 Identities = 27/144 (19%), Positives = 52/144 (36%), Gaps = 19/144 (13%)

Query  366   NSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQ  425
                + +IF  + +   +L   +                 G    S  ++  Q  +   + 
Sbjct  1001  EKQKTLIFVNSVKFCDTLAALISSA--------------GVSTISMHSYQNQEQRDRTLD  1046

Query  426   KFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL-----TNEISMVQARGRARADQSVYA  480
              F+ G    +VA++V   GL+I   + VV Y +         ++ +   GRA    +  A
Sbjct  1047  DFRRGKYQCMVASNVCARGLNIAGLDHVVNYDMPDKNGFDEYVNRIGRTGRAGFTGTSTA  1106

Query  481   FVATEGSRELKRELINEALETLME  504
             FV  E   ++   L++   E   E
Sbjct  1107  FVDVENDTDIIPCLVSILNEAKKE  1130


 Score = 48.3 bits (113),  Expect = 2e-04, Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 50/144 (35%), Gaps = 20/144 (14%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYV-----AKRHLET-------VDGAKVVVLV  54
            Q     P + G +++    TG+GKT  A  +          E            +++++ 
Sbjct  763  QRASFFPIMHGNDVVACAHTGSGKTL-AFLIPFVIKLMEEFEKDRDVTDEKPSPRLLIVA  821

Query  55   NRVHLVTQHGEEFRRML-DGRWTVTTLSGDMGPRAGFGHL--ARCHDLLICTAELLQMAL  111
                LV Q     R++  +         G     A   HL      ++L+ T   LQ  +
Sbjct  822  PTRELVNQTFTTARQLTYETGLKCGLAFGGYSRNANVQHLRSFSQLNILVATMGRLQDFV  881

Query  112  TSPEEEEHVELTVFSLIVVDECHH  135
             + E    V L+    IV+DE   
Sbjct  882  NAGE----VSLSKMKYIVLDEADR  901


>sp|Q4E162|IF4A_TRYCC Probable eukaryotic initiation factor 4A 
OS=Trypanosoma cruzi (strain CL Brener) OX=353153 GN=Tc00.1047053511585.190 
PE=3 SV=1
Length=404

 Score = 93.3 bits (230),  Expect = 5e-19, Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 52/116 (45%), Gaps = 14/116 (12%)

Query  352  EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ  411
            E     L   + + +  + +IF  TR+    L   L Q                   S  
Sbjct  253  EHKLDTLMDLYETVSIAQSVIFANTRRKVDWLAQQLNQSN--------------HTVSCM  298

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
             + M ++D+++V+  F++G+  +LV T +   G+D+ H N+V+ + L TN+ S + 
Sbjct  299  HSEMPKQDREKVMSTFRNGSSRVLVTTDLVARGIDVHHVNIVINFDLPTNKESYLH  354


 Score = 44.0 bits (102),  Expect = 0.003, Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 45/133 (34%), Gaps = 10/133 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT-RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q   I+P   G +II    +G GKT   +  + +R     +  + +VL     L  Q  E
Sbjct  53   QQRAIVPFTRGGDIIAQAQSGTGKTGAFSIGLLQRLDFRHNVLQGLVLSPTRELALQTAE  112

Query  66   EFRRMLDG-----RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
               R+ +           T  G    +  +  L     + + T   +        +   +
Sbjct  113  VITRIGEFLAEGNSSFCATFVGGTRVQDDYRKLQAGSIVAVGTPGRVVDV----TKRGAM  168

Query  121  ELTVFSLIVVDEC  133
                  ++V+DE 
Sbjct  169  RTEHLRVLVLDEA  181


>sp|Q6CXT4|IF4A_KLULA ATP-dependent RNA helicase eIF4A OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / 
NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=TIF1 PE=3 SV=1
Length=396

 Score = 93.3 bits (230),  Expect = 5e-19, Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 53/116 (46%), Gaps = 14/116 (12%)

Query  352  EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ  411
            +     L   + S +  + +IF  TR+    L   L++                   S+ 
Sbjct  246  QYKYDCLTDLYDSISVTQAVIFCNTRRKVEELTERLRENN--------------FTVSAI  291

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
             + + Q+++  ++++F+ G+  +L++T +   G+D+   ++V+ Y L +N+ + + 
Sbjct  292  YSDLQQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYIH  347


 Score = 53.6 bits (127),  Expect = 3e-06, Method: Composition-based stats.
 Identities = 22/131 (17%), Positives = 45/131 (34%), Gaps = 10/131 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT---RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ-  62
            Q   I+P +EGK+++    +G GKT     AA   +   E +   + ++L     L  Q 
Sbjct  49   QQRAILPIIEGKDVLAQAQSGTGKTGTFSIAAL--QNIDEKIKAPQGLILAPTRELALQI  106

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
                    +     V    G    +     L     +++ T   +   +    +    + 
Sbjct  107  QKVVMALAIHMDVKVHACIGGTSLQEDSEALRGGAQIIVGTPGRVFDMI----DRRIFKT  162

Query  123  TVFSLIVVDEC  133
                + ++DE 
Sbjct  163  DNIKMFILDEA  173


>sp|Q8Y0N2|UVRB_RALN1 UvrABC system protein B OS=Ralstonia nicotianae 
(strain ATCC BAA-1114 / GMI1000) OX=267608 GN=uvrB PE=3 
SV=1
Length=696

 Score = 95.2 bits (235),  Expect = 5e-19, Method: Composition-based stats.
 Identities = 82/607 (14%), Positives = 180/607 (30%), Gaps = 122/607 (20%)

Query  26   TGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDG------------  73
            TG+GKT          +       +V       L  Q   EFR                 
Sbjct  60   TGSGKTYT----MANVIAQAGRPAIVF-APNKTLAAQLYSEFREFFPRNAVEYFVSYYDY  114

Query  74   ----------------RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE  117
                              +V      M   A    L R   +++ T   +   + +P E 
Sbjct  115  YQPEAYVPQRDLFIEKDSSVNEHIEQMRLSATKSLLERRDVVIVATVSAIY-GIGNPTEY  173

Query  118  EHVEL-----TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGT  172
              + L        S           +D +  +I  QY   +    +   +V G T     
Sbjct  174  HQMILTLRTGDKIS----------QRDVIARLIAMQYTRNETDFQRGTFRVRGDTVDIFP  223

Query  173  GGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDL  232
               +++   +        +L  +  ++ +    ++   +  P   Y           G +
Sbjct  224  AEHAEMAVRLELFDDEVDSLQLFDPLTGR-VRQKILRFTVYPSSHYVTPRETVLRAIGTI  282

Query  233  LKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND---  289
              +L +++    +  +L      ++ ++    L     L   +    Y+ HL        
Sbjct  283  KAELRERLDFFYQENKLVE--AQRLEQRTRFDLEMLQELGFCKGIENYSRHLSGAQPGEP  340

Query  290  ------------ALLIHDTVRAVDALAAL--QDFYHREHVTKTQILCAERRLLAL-----  330
                         + + ++   +  L  +   D   +E ++                   
Sbjct  341  PPTLVDYLPSDALMFLDESHVLIGQLNGMYNGDRARKETLSAYGFRLPSALDNRPLKFAE  400

Query  331  FDDRKNELAHLATHGPENPKLEMLEKILQR----------------------------QF  362
            F+ +  ++  ++    +  K    ++++++                              
Sbjct  401  FEGKMRQVVFVSATPADYEKQRAGDEVVEQVVRPTGLVDPIIHVRPATTQVDDLLSEIHE  460

Query  363  SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE  422
                  R ++ T T++ A  L  +L +               G       + +   ++ E
Sbjct  461  RVKAGERVLVTTLTKRMAEQLTEFLSEN--------------GVKVRYLHSDIDTVERVE  506

Query  423  VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQS  477
            +I+  + GT ++LV  ++  EGLDIP  ++V          L  E S++Q  GRA  + +
Sbjct  507  IIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAARNVN  566

Query  478  VYAFVATEGSRELKRELINEALETLMEQ-AVAAVQKMDQAEYQAKIRDLQQAALTKRAAQ  536
              A +  +   E  ++ I E      +Q A      +       +I+D+         A+
Sbjct  567  GTAILYGDRITESMKKAIGETERRRAKQIAHNEAHGITPRGVVKRIKDIIDGVYNVDDAR  626

Query  537  AAQRENQ  543
            A  +  Q
Sbjct  627  AELKAAQ  633


>sp|P47943|IF4A_SCHPO ATP-dependent RNA helicase eIF4A OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=tif1 
PE=1 SV=2
Length=392

 Score = 93.3 bits (230),  Expect = 5e-19, Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 46/118 (39%), Gaps = 14/118 (12%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K E     L   + +    + +IF  TR+    L   L ++                  S
Sbjct  241  KEEWKLDTLCDLYETVTVTQAVIFCNTRRKVDWLTEQLTERD--------------FTVS  286

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
            S    M Q  +  ++ +F+ G+  +L+ T +   G+D+   ++V+ Y L  N  + + 
Sbjct  287  SMHGDMDQAQRDTLMHEFRTGSSRILITTDLLARGIDVQQVSLVINYDLPANRENYIH  344


 Score = 48.3 bits (113),  Expect = 2e-04, Method: Composition-based stats.
 Identities = 28/165 (17%), Positives = 57/165 (35%), Gaps = 11/165 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q   IMP L  ++++    +G GKT   +  V ++   ++   + ++L     L  Q  +
Sbjct  46   QQRAIMPILGERDVLAQAQSGTGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQK  105

Query  66   EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
                + D          G    R     L     +++ T   +   +        +    
Sbjct  106  VVVALGDLMNVECHACIGGTLVRDDMAALQAGVHVVVGTPGRVHDMIQRRA----LPTDA  161

Query  125  FSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS  169
              + V+DE      D + +      +    Q   P  QV+ L+A+
Sbjct  162  VQMFVLDEA-----DEMLSRGFKDQIYDIFQLLPPTAQVVLLSAT  201


>sp|A3GFI4|IF4A_PICST ATP-dependent RNA helicase eIF4A OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=TIF1 PE=3 SV=1
Length=397

 Score = 93.3 bits (230),  Expect = 5e-19, Method: Composition-based stats.
 Identities = 42/305 (14%), Positives = 101/305 (33%), Gaps = 30/305 (10%)

Query  165  GLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYN--LCH  222
            G TA+       ++D        L         +  +N    +  +              
Sbjct  72   GKTATFTISALQRIDENEKSTQALILAPTRELALQIKNVITSIGLYLNVTVHASIGGTSM  131

Query  223  RRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYAL  282
            +   + F   ++ ++       +M E  R F T+  +  ++  ++    +G +EQ     
Sbjct  132  QDDIEAFRSGVQVVVGTPGRVFDMIE-RRYFKTEKVKMFIMDEADEMLSSGFKEQIYNIF  190

Query  283  HLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLA  342
             L      +++       D L     F +       +        +  F        +  
Sbjct  191  RLLPETTQVVLLSATMPQDVLEVTTKFMNNPVRILVKKDELTLEGIKQFYINVELEDY--  248

Query  343  THGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL  402
                   K + L  +    + S +  + +IF  TR     L   L+ +            
Sbjct  249  -------KFDCLCDL----YDSISVTQAVIFCNTRSKVEFLTTKLKAEN-----------  286

Query  403  LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE  462
                  S+    + Q ++  ++++F+ G+  +L+AT +   G+D+   ++V+ Y L +N+
Sbjct  287  ---FTVSAIHADLPQAERDTIMKEFRSGSSRILIATDLLARGIDVQQVSLVINYDLPSNK  343

Query  463  ISMVQ  467
             + + 
Sbjct  344  ENYIH  348


 Score = 54.4 bits (129),  Expect = 2e-06, Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 44/129 (34%), Gaps = 6/129 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q   I+P  EG++++    +G GKT        +R  E     + ++L     L  Q   
Sbjct  50   QQRAILPITEGRDVLAQAQSGTGKTATFTISALQRIDENEKSTQALILAPTRELALQIKN  109

Query  66   EFRRM-LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
                + L    TV    G    +           +++ T   +   +    E  + +   
Sbjct  110  VITSIGLYLNVTVHASIGGTSMQDDIEAFRSGVQVVVGTPGRVFDMI----ERRYFKTEK  165

Query  125  FSLIVVDEC  133
              + ++DE 
Sbjct  166  VKMFIMDEA  174


>sp|A7EAY2|MAK5_SCLS1 ATP-dependent RNA helicase mak5 OS=Sclerotinia 
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 
GN=mak5 PE=3 SV=1
Length=780

 Score = 95.2 bits (235),  Expect = 6e-19, Method: Composition-based stats.
 Identities = 35/122 (29%), Positives = 49/122 (40%), Gaps = 17/122 (14%)

Query  366  NSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQ  425
             + R +IFT +  S   L   LQ                     S  + M Q+ +   I+
Sbjct  502  PNQRTLIFTNSIHSVRRLTPMLQTLNIPAH--------------SLHSQMIQKARMRSIE  547

Query  426  KF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFV  482
            KF   + T ++LVAT VA  GLDI    +V+ Y L       V   GR ARA  S  + +
Sbjct  548  KFSRTNNTGSVLVATDVAARGLDIGGVQLVIHYHLPRTADMYVHRSGRTARAAASGSSIL  607

Query  483  AT  484
              
Sbjct  608  LC  609


 Score = 50.6 bits (119),  Expect = 4e-05, Method: Composition-based stats.
 Identities = 30/146 (21%), Positives = 52/146 (36%), Gaps = 20/146 (14%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAA--------YVAKRHLETVDGAK------VVV  52
            Q E I   L G +++    TG+GKT  A               L+  +  K       ++
Sbjct  240  QSEAIPEVLAGHDVVGKASTGSGKTL-AFGIPIVEKWLEVYGELDEDELKKSTRPPTALI  298

Query  53   LVNRVHLVTQ---HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQM  109
            L     L  Q   H     + +     V  ++G +  +     L++  D++I T   L  
Sbjct  299  LSPTRELAHQLTEHITTLCKGMPTSPYVAAVTGGLSVQKQQRQLSKA-DIIIGTPGRLWE  357

Query  110  ALTSPEEEEHVELTVFSLIVVDECHH  135
             ++S  E     L     +V+DE   
Sbjct  358  VISSSNELS-AGLKQVRFLVIDEADR  382


>sp|A5DB98|IF4A_PICGU ATP-dependent RNA helicase eIF4A OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=TIF1 PE=3 
SV=1
Length=396

 Score = 93.3 bits (230),  Expect = 6e-19, Method: Composition-based stats.
 Identities = 44/305 (14%), Positives = 99/305 (32%), Gaps = 30/305 (10%)

Query  165  GLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYN--LCH  222
            G TA+       ++D  +     L         +  QN    +  +              
Sbjct  71   GKTATFTISALQRIDENLKATQALILAPTRELALQIQNVITHIGLYLNVTVHASIGGTSM  130

Query  223  RRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYAL  282
            +   + F   ++ ++       +M E  R F T   +  ++  ++    +G +EQ     
Sbjct  131  KDDIEAFKSGVQIVVGTPGRVFDMIE-RRFFRTDKVKMFIMDEADEMLSSGFKEQIYNIF  189

Query  283  HLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLA  342
             L      +++       D L     F +       +        +  F     +     
Sbjct  190  RLLPETTQVVLLSATMPQDVLEVTTKFMNNPVRILVKKDELTLEGIKQFYINVEQEDF--  247

Query  343  THGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL  402
                   K + L  +    + S +  + +IF  TR     L   L+ +            
Sbjct  248  -------KFDCLCDL----YDSISVTQAVIFCNTRSKVEFLTTKLKAEN-----------  285

Query  403  LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE  462
                  S+    + Q D+  ++ +F+ G+  +L+AT +   G+D+   ++V+ Y L  N+
Sbjct  286  ---FTVSAIHADLPQSDRDTIMNEFRSGSSRILIATDLLARGIDVQQVSLVINYDLPANK  342

Query  463  ISMVQ  467
             + + 
Sbjct  343  ENYIH  347


 Score = 53.3 bits (126),  Expect = 5e-06, Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 43/129 (33%), Gaps = 6/129 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q   I+P  EG++++    +G GKT        +R  E +   + ++L     L  Q   
Sbjct  49   QQRAILPITEGRDVLAQAQSGTGKTATFTISALQRIDENLKATQALILAPTRELALQIQN  108

Query  66   EFRRM-LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
                + L    TV    G    +           +++ T   +   +    E        
Sbjct  109  VITHIGLYLNVTVHASIGGTSMKDDIEAFKSGVQIVVGTPGRVFDMI----ERRFFRTDK  164

Query  125  FSLIVVDEC  133
              + ++DE 
Sbjct  165  VKMFIMDEA  173


>sp|A2QAX7|DRS1_ASPNC ATP-dependent RNA helicase drs1 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=drs1 PE=3 SV=1
Length=824

 Score = 95.2 bits (235),  Expect = 6e-19, Method: Composition-based stats.
 Identities = 40/185 (22%), Positives = 76/185 (41%), Gaps = 23/185 (12%)

Query  343  THGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL  402
              G E+ +L  L  + +  ++     R I+F R ++ AH + +                 
Sbjct  534  RPGREDKRLGYLLYLCKEIYTG----RVIVFFRQKKEAHRVRIIFG--------------  575

Query  403  LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE  462
            L+G   +     M+Q   ++ ++ F++G    L+AT +A  GLDI     V+ Y    + 
Sbjct  576  LLGLKAAELHGSMSQ---EQSVENFREGKAAFLLATDLASRGLDIKGVETVINYEAPQSH  632

Query  463  ISMVQARGR-ARADQSVYA-FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA  520
               +   GR ARA +S  A  +A E  R++ +  +        + A   ++      + A
Sbjct  633  EIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAAVKAGKSQGAKIASRVIEPAVADSWAA  692

Query  521  KIRDL  525
            K  +L
Sbjct  693  KAEEL  697


 Score = 52.5 bits (124),  Expect = 1e-05, Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 48/136 (35%), Gaps = 12/136 (9%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHL----ETVDGAKVVVLVNRVHLVTQ  62
            Q + I  AL GK+I+    TG+GKT A        L      V  ++V +L+    L  Q
Sbjct  336  QRKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLLFRPRKVPTSRVAILMPTRELAVQ  395

Query  63   HGEE---FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
                        D  +    L G    R     L +  D++I T       + +      
Sbjct  396  CYNVATKLATYTDITF--CQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNS---AS  450

Query  120  VELTVFSLIVVDECHH  135
              +    ++V+DE   
Sbjct  451  FTVDTLEILVLDEADR  466


>sp|A4R5B8|DBP10_PYRO7 ATP-dependent RNA helicase DBP10 OS=Pyricularia 
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 
GN=DBP10 PE=3 SV=1
Length=914

 Score = 95.2 bits (235),  Expect = 6e-19, Method: Composition-based stats.
 Identities = 38/159 (24%), Positives = 56/159 (35%), Gaps = 25/159 (16%)

Query  329  ALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQ  388
              F + K+E +     GP+ P  +                  IIFT T+     L   L 
Sbjct  337  EGFKEDKDEGSKKRKRGPDRPNAK----------EKPTEHSTIIFTATKFHVEYLTSILV  386

Query  389  QQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIP  448
            Q               G   S     + Q  ++  ++ F+ G  N+LV T VA  G+DIP
Sbjct  387  QA--------------GYAVSHAYGALDQTARKIQVEDFRRGKTNILVVTDVAARGIDIP  432

Query  449  HCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEG  486
                V+ Y         V   GR ARA Q  +++     
Sbjct  433  VLANVINYDFCDQPKVFVHRVGRTARAGQKGWSYSLVSD  471


 Score = 50.2 bits (118),  Expect = 6e-05, Method: Composition-based stats.
 Identities = 25/114 (22%), Positives = 40/114 (35%), Gaps = 8/114 (7%)

Query  26   TGAGKTRAAAYVAKRHLETVD---GAKVVVLVNRVHLVTQHGEEFRRMLDGRWTVT-TLS  81
            TG+GKT A        L       GA+ +++     L  Q  +  +    G    T  L 
Sbjct  136  TGSGKTAAFVIPMIERLRAHSARVGARALIMSPSRELALQTLKVVKEFGKGTDLKTVLLV  195

Query  82   GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH  135
            G       FG +    D++I T           + E  ++L+    +V DE   
Sbjct  196  GGDSLEDQFGFMTTNPDIIIATPGRFLH----LKVEMSLDLSSIKYVVFDEADR  245


>sp|P87206|IF4A_CANAL ATP-dependent RNA helicase eIF4A OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=TIF1 
PE=3 SV=1
Length=397

 Score = 92.9 bits (229),  Expect = 7e-19, Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 77/219 (35%), Gaps = 27/219 (12%)

Query  249  LSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQD  308
              R F T   +  ++  ++    +G +EQ      L      +++       D L     
Sbjct  157  ERRYFKTDKVKMFILDEADEMLSSGFKEQIYNIFRLLPETTQIVLLSATMPQDVLEVTTK  216

Query  309  FYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSP  368
            F +       +        +  F        +         K + L  +    + S +  
Sbjct  217  FMNNPVRILVKKDELTLEGIKQFYINVELEDY---------KFDCLCDL----YDSISVT  263

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            + +IF  TR     L   L++Q                  S+    + Q ++  ++++F+
Sbjct  264  QAVIFCNTRSKVEFLTNKLREQH--------------FTVSAIHADLPQAERDTIMKEFR  309

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
             G+  +L++T +   G+D+   ++V+ Y L  N+ + + 
Sbjct  310  SGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIH  348


 Score = 53.6 bits (127),  Expect = 3e-06, Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 44/129 (34%), Gaps = 6/129 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q   I+P  EG++++    +G GKT        +R  E     + ++L     L  Q   
Sbjct  50   QQRAILPITEGRDVLAQAQSGTGKTATFTISALQRINENEKATQALILAPTRELALQIKN  109

Query  66   EFRRM-LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
                + L  + TV    G                +++ T   +   +    E  + +   
Sbjct  110  VITAIGLYLKVTVHASIGGTSMSDDIEAFRSGVQIVVGTPGRVLDMI----ERRYFKTDK  165

Query  125  FSLIVVDEC  133
              + ++DE 
Sbjct  166  VKMFILDEA  174


>sp|A7TK55|IF4A_VANPO ATP-dependent RNA helicase eIF4A OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 
21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=TIF1 PE=3 SV=1
Length=396

 Score = 92.9 bits (229),  Expect = 7e-19, Method: Composition-based stats.
 Identities = 22/116 (19%), Positives = 52/116 (45%), Gaps = 14/116 (12%)

Query  352  EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ  411
            +     L   + S +  + +IF  TR+    L   L +                   SS 
Sbjct  246  QYKFDCLSDLYDSISVTQAVIFCNTRRKVEELTQKLTESN--------------FTVSSI  291

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
             + + Q+++  ++++F+ G+  +L++T +   G+D+   ++V+ Y L TN+ + + 
Sbjct  292  YSDLPQQERDVIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPTNKENYIH  347


 Score = 49.8 bits (117),  Expect = 6e-05, Method: Composition-based stats.
 Identities = 19/131 (15%), Positives = 41/131 (31%), Gaps = 11/131 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT---RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ-  62
            Q   I+P +E  +++    +G GKT     AA   +R   ++   + ++L     L  Q 
Sbjct  50   QQRAILPIVEEHDVLAQAQSGTGKTGTFSIAAL--QRIDSSIKAPQALILAPTRELALQI  107

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
                          V    G            +   +++ T   +   +         + 
Sbjct  108  QKVVIALAFHMDVKVHACIGGTSF-VEDTEGLKDAQIVVGTPGRVSDNIQ---RHRF-KT  162

Query  123  TVFSLIVVDEC  133
                + ++DE 
Sbjct  163  DNIKMFILDEA  173


>sp|A5DVM3|IF4A_LODEL ATP-dependent RNA helicase eIF4A OS=Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=TIF1 PE=3 SV=1
Length=397

 Score = 92.9 bits (229),  Expect = 8e-19, Method: Composition-based stats.
 Identities = 44/305 (14%), Positives = 101/305 (33%), Gaps = 30/305 (10%)

Query  165  GLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYN--LCH  222
            G TA+       ++D        L         +  +N    +  +              
Sbjct  72   GKTATFTISALQRIDENEKSTQALILAPTRELALQIKNVITSIGLYLNVTVHASIGGTSM  131

Query  223  RRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYAL  282
                + F   ++ ++       +M E  R F T   +  ++  ++    +G +EQ     
Sbjct  132  SDDIEAFKSGVQIVVGTPGRVFDMIE-RRYFRTDKVKMFILDEADEMLSSGFKEQIYNIF  190

Query  283  HLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLA  342
             L      +++       D L     F         +IL  +  L    +  K    ++ 
Sbjct  191  RLLPETTQVVLLSATMPQDVLEVTTKFM----NNPVRILVKKDELT--LEGIKQYFINVE  244

Query  343  THGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL  402
                           L   + S +  + +IF  TR     L   L++Q+           
Sbjct  245  VED-------YKFDCLVDLYDSISVTQAVIFCNTRSKVEFLTNKLREQK-----------  286

Query  403  LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE  462
                  S+    + Q ++  ++++F+ G+  +L++T +   G+D+   ++V+ Y L  N+
Sbjct  287  ---FTVSAIHADLPQGERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANK  343

Query  463  ISMVQ  467
             + + 
Sbjct  344  ENYIH  348


 Score = 54.4 bits (129),  Expect = 2e-06, Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 42/129 (33%), Gaps = 6/129 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q   I+P  EG++++    +G GKT        +R  E     + ++L     L  Q   
Sbjct  50   QQRAILPITEGRDVLAQAQSGTGKTATFTISALQRIDENEKSTQALILAPTRELALQIKN  109

Query  66   EFRRM-LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
                + L    TV    G                +++ T   +   +    E  +     
Sbjct  110  VITSIGLYLNVTVHASIGGTSMSDDIEAFKSGVQIVVGTPGRVFDMI----ERRYFRTDK  165

Query  125  FSLIVVDEC  133
              + ++DE 
Sbjct  166  VKMFILDEA  174


>sp|Q6BV58|MAK5_DEBHA ATP-dependent RNA helicase MAK5 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / 
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=MAK5 PE=3 SV=1
Length=790

 Score = 94.9 bits (234),  Expect = 8e-19, Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 93/282 (33%), Gaps = 52/282 (18%)

Query  292  LIHDTVRAVDALAALQDFYHREHVTKT--QILCAERRLLALFDDRKNELAHLATHGPENP  349
            L+     + D    L          +     L     +L L +D+        T    NP
Sbjct  403  LVFSATFSRDLFGKLDKHLKSNKNKEEMGSSLIDNDEILQLLNDKLKFKDSKPTLVDANP  462

Query  350  KLEMLEKILQRQFSSSNSPR--------------GIIFTRTRQSAHSLLLWLQQQQGLQT  395
            K  +  +I +       + R               ++F  +  S   L  +L   +    
Sbjct  463  KEMVAGQITEALVECGPTERDLYLYYFLLLYPGSTLVFANSIDSVKRLAPFLNNLKVPTF  522

Query  396  VDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD----GTLNLLVATSVAEEGLDIPHCN  451
                          S  + M Q+ +   +++F++     +  +L+A+ VA  GLDIP+ +
Sbjct  523  --------------SIHSSMIQKQRLRTLERFKEASSKNSTAVLIASDVAARGLDIPNID  568

Query  452  VVVRYGLLTNEISMVQARGR-ARADQSVYAFVAT-----------------EGSRELKRE  493
             V  Y L  +    +   GR  RA +   + +                     +++  R 
Sbjct  569  HVAHYHLPRSADVYIHRSGRTGRAGKEGVSIMFCSPQESSGPLRKLRKLVANNTKKRTRL  628

Query  494  LINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAA  535
             ++  ++ L  +     Q   +    +K+ D ++++ + R  
Sbjct  629  NVHNDVKLLPLEMDLVSQIKPRVTLASKLADAERSSSSTRKE  670


 Score = 50.6 bits (119),  Expect = 5e-05, Method: Composition-based stats.
 Identities = 29/164 (18%), Positives = 64/164 (39%), Gaps = 20/164 (12%)

Query  14   ALEGKNIIIWLPTGAGKTRAA-AYVAKRHLETV----DGAKV------VVLVNRVHLVTQ  62
            A+EGK++I    TG+GKT A    + +RHL+ +       KV      ++      L  Q
Sbjct  233  AIEGKDVIGKAITGSGKTLAYGIPILERHLQKMAKANQSKKVINPPTGIIFAPTRELAHQ  292

Query  63   ---HGEEFRRMLDGRWT-VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEE  118
               H     +        + +++G +  +     L+    +++ T       L   +   
Sbjct  293  VVDHLNRIAKFTPLSQHGIVSITGGLSIQKQERLLSHGPGIVVATPGRFLE-LLQKDMAL  351

Query  119  HVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQ  162
               L+   ++V+DE     +D  +     +++++     +  P+
Sbjct  352  VQRLSCTDIVVLDEADRLLQDGHF----DEFVKILELFGKHRPR  391


>sp|A5E726|DBP6_LODEL ATP-dependent RNA helicase DBP6 OS=Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=DBP6 PE=3 SV=1
Length=663

 Score = 94.5 bits (233),  Expect = 9e-19, Method: Composition-based stats.
 Identities = 63/384 (16%), Positives = 137/384 (36%), Gaps = 26/384 (7%)

Query  156  RAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPC  215
            + + +P+V  +   P     +++   +   L L  NL+   + +  +   + +   +   
Sbjct  296  KDRVVPRVRAIVLVPTKPLINQVRATM-LQLALGTNLNIVSLKNDISIREESERLIELVP  354

Query  216  KQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQ  275
                    R  +        L    +  ++  +       Q + Q ++       +  + 
Sbjct  355  DVVISTPGRLVEHLAMDSISLSSLRYLVVDEADRLLNQSFQNWSQILISKIHLQQVYDV-  413

Query  276  EQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRK  335
               V++L ++++  +  +      + +L          + ++       R +  LF    
Sbjct  414  -ANVWSLKVQKFIFSATLTTDAGKLASLDFHNPRLLIVNDSQ-------RLVNELFSVPA  465

Query  336  NELAHLATHGPENPKLEMLEKILQRQF-SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQ  394
                +    G     L+ L  IL +   +       ++FT++ +S+  L   LQ      
Sbjct  466  MLSEYKLNFGVAKSSLKPL--ILAKFLIAQEKLSDVLVFTKSNESSIRLCTLLQAI----  519

Query  395  TVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV  454
               I  Q  +  G  + + + T   + ++++ F    +N+LVAT +   GLD+     VV
Sbjct  520  FDRICLQEKVKVGFMNLTNNRT-SLRSKILKDFTSQKINILVATDLIARGLDVTSIKDVV  578

Query  455  RYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKREL-------INEALETLMEQA  506
             Y LL +    V   GR ARA+Q+  A+    G  E K           N  ++ +    
Sbjct  579  NYDLLNSSREYVHRVGRTARANQAGNAYNLVFGKGEEKWFKTISSEVSRNNDVKDVEVNL  638

Query  507  VAAVQKMDQAEYQAKIRDLQQAAL  530
               +   D+  YQ  ++ LQ    
Sbjct  639  KQLISDEDEKLYQEALQSLQDQVR  662


 Score = 54.8 bits (130),  Expect = 2e-06, Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 46/120 (38%), Gaps = 8/120 (7%)

Query  20   IIIWLPTGAGKTRAAAYVAKRHLET--VDGAKVVVLVNRVHLVTQ-HGEEFRRMLDGRWT  76
            +++   TG+GKT A +      L+   V   + +VLV    L+ Q      +  L     
Sbjct  273  VLVNASTGSGKTLAYSIPIIESLKDRVVPRVRAIVLVPTKPLINQVRATMLQLALGTNLN  332

Query  77   VTTLSGDMGPRAGFGHLARCH-DLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH  135
            + +L  D+  R     L     D++I T   L   L        + L+    +VVDE   
Sbjct  333  IVSLKNDISIREESERLIELVPDVVISTPGRLVEHLAMDS----ISLSSLRYLVVDEADR  388


>sp|Q6CH90|SUB2_YARLI ATP-dependent RNA helicase SUB2 OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=SUB2 PE=3 
SV=2
Length=441

 Score = 92.9 bits (229),  Expect = 9e-19, Method: Composition-based stats.
 Identities = 50/336 (15%), Positives = 105/336 (31%), Gaps = 37/336 (11%)

Query  200  PQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYE  259
            P  C   +  H+++   Q    + R      D+   +        +  EL +   T  + 
Sbjct  123  PGECSVVVLCHTRELAYQIMNEYARFSKYLPDVKTAVFYGGSPIQKDIELIQNKETSPHV  182

Query  260  QQV--VKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDF-----YHR  312
                  +L        L+   V    +   +  L   D  R V  +  +           
Sbjct  183  IVATPGRLHALVRDKHLRLGNVKTFVIDECDKVLDQIDMRRDVQEIFRVTPRQKQVMMFS  242

Query  313  EHVTKTQILCAERRLLALFDDRKNELAHLATHG--------PENPKLEMLEKILQRQFSS  364
              +++      ++ + +  +   ++   L  HG         E  K   L  +L      
Sbjct  243  ATLSQEIRPICKKFMSSPLEILVDDEGKLTLHGLQQYYVDVEEKSKNRKLGDLLDNL---  299

Query  365  SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI  424
                + IIF ++   A+ L   L                 G   ++  + + Q ++    
Sbjct  300  -EFNQVIIFVKSTSRANGLSQVLNAN--------------GFPCTAVHSGIPQEERIARY  344

Query  425  QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARA-DQSVYAFVA  483
            ++F++    + V+T V   G+DI   N+ + Y L       +   GRA        A   
Sbjct  345  KEFKEFKKRICVSTDVFGRGIDIERINLAINYDLPAEADQYLHRVGRAGRFGTKGLAISF  404

Query  484  TEGSRELKRELINEALETLM-EQAVAAVQKMDQAEY  518
                 +  +E++ +  E      A    + +D + Y
Sbjct  405  VSTPED--KEVLAKIQERFEVNIAPYPAEGVDPSTY  438


 Score = 51.7 bits (122),  Expect = 1e-05, Method: Composition-based stats.
 Identities = 31/135 (23%), Positives = 49/135 (36%), Gaps = 14/135 (10%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG-AKVVVLVNRVHLVTQ---  62
            Q   I  ++ G +++     G GKT        + LE V G   VVVL +   L  Q   
Sbjct  84   QQVCIPQSILGTDVLCQAKAGVGKTAVFVLSTLQQLEPVPGECSVVVLCHTRELAYQIMN  143

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHD----LLICTAELLQMALTSPEEEE  118
                F + L    T     G   P      L +  +    +++ T   L     +   ++
Sbjct  144  EYARFSKYLPDVKTAVFYGG--SPIQKDIELIQNKETSPHVIVATPGRLH----ALVRDK  197

Query  119  HVELTVFSLIVVDEC  133
            H+ L      V+DEC
Sbjct  198  HLRLGNVKTFVIDEC  212


>sp|Q7XJN0|RH17_ARATH DEAD-box ATP-dependent RNA helicase 17 OS=Arabidopsis 
thaliana OX=3702 GN=RH17 PE=2 SV=1
Length=609

 Score = 94.1 bits (232),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 46/259 (18%), Positives = 86/259 (33%), Gaps = 27/259 (10%)

Query  252  KFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVD--ALAALQDF  309
            + G     +Q++KL  +      +E  +    +++ N  L      +  D   L+     
Sbjct  194  ELGYGKEIEQIIKLLGSGQNEQGEEDDIVPKGIQKQNLLLSATLNDKVNDLAKLSLDDPV  253

Query  310  YHREHVTKTQILCAERRLLALFDDRKNELAHLATH-GPENP-------------------  349
                  TK Q   +     A   D ++ + H+     P +                    
Sbjct  254  MIGLDNTKLQQNLSIESPAAPDSDAEDMVIHVNKSANPLSEDYGIPSQLVQRYLRVPCGA  313

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIR----AQLLIG  405
            +L  L  +L+  F    S + ++F  TR +       L + Q     +       +L + 
Sbjct  314  RLVALLSVLKNLFEREASQKVVVFFSTRDAVDFHYSLLSEFQWPPNSETEEEGTKELFLK  373

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM  465
                     M Q D++     F+     +L++T VA  GLD P    +++Y         
Sbjct  374  CKTFRLHGSMEQEDRRSAFGTFKTEKQAVLLSTDVAARGLDFPKVRCIIQYDCPGEATEY  433

Query  466  VQARGR-ARADQSVYAFVA  483
            V   GR AR  +   A + 
Sbjct  434  VHRVGRTARIGEKGEALLF  452


 Score = 52.9 bits (125),  Expect = 9e-06, Method: Composition-based stats.
 Identities = 30/137 (22%), Positives = 46/137 (34%), Gaps = 14/137 (10%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYV-AKRHLETVDGA-------KVVVLVNRVH  58
            Q + I   L G+++++  PTG GKT  A       HL+              +V+V    
Sbjct  57   QAQAIPVILSGRDVLVNAPTGTGKT-IAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRE  115

Query  59   LVTQHGEEFRRMLDG--RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE  116
            L  Q  E   ++L          + G          L +   +LI T   L   L +   
Sbjct  116  LCLQVYETLEKLLHRFHWIVPGYVMGGEKKAKEKARLRKGISILIATPGRLLDHLKNTAS  175

Query  117  EEHVELTVFSLIVVDEC  133
              H  L      + DE 
Sbjct  176  FVHKNLRWV---IFDEA  189


>sp|Q9ESV0|DDX24_MOUSE ATP-dependent RNA helicase DDX24 OS=Mus 
musculus OX=10090 GN=Ddx24 PE=1 SV=2
Length=857

 Score = 94.5 bits (233),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 62/396 (16%), Positives = 131/396 (33%), Gaps = 32/396 (8%)

Query  154  LQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQ  213
            + +  P   +LGL  +P    A ++   I+ V +    ++T  ++   +   Q +  ++ 
Sbjct  379  IYKVHPRRPLLGLVLTPTRELAIQVRQHIDAVAKF-TGINTAILVGGMSTQKQQRMLNRH  437

Query  214  PCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAG  273
            P +       R  +   +    L +       + + + +   + +  ++ +L E    + 
Sbjct  438  P-EIVIATPGRLWELVKEKHPHLSNLRQLRCLVIDEADRMVEKGHFAELSQLLEMLNDSQ  496

Query  274  LQEQR---VYALHLRRYNDA---LLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRL  327
                R   V++  L   + A   +L    V+ +D    L     +  +     +    R 
Sbjct  497  YNPSRQTLVFSATLTLVHQAPARILHKKHVKKMDKTDKLDLLMQKVGMRGKPKVIDLTRN  556

Query  328  LALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWL  387
                +     L     H   + K   L   L +        R ++F  +      L   L
Sbjct  557  ----EGTVETLTETKIHCETDEKDLYLYYFLMQY-----PGRSLVFANSISCIKRLSGLL  607

Query  388  QQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDI  447
            +    +                     M Q+ +   +++F      +L+AT VA  GLDI
Sbjct  608  KVLDVMPLTLHAC--------------MHQKQRLRNLEQFARLQDCVLLATDVAARGLDI  653

Query  448  PHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQA  506
            P    V+ Y +       +   GR ARA     + +       +  + I + L+   +  
Sbjct  654  PKVQHVIHYQVPRTSEIYIHRSGRTARAASEGLSLMLIGPEDVINFKKIYKTLQKDEDIP  713

Query  507  VAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQREN  542
            +  VQ       + +IR  +Q    +     A   N
Sbjct  714  LFPVQSKYMDVVKERIRLARQIEKAEYRNFQACLHN  749


 Score = 43.6 bits (101),  Expect = 0.007, Method: Composition-based stats.
 Identities = 23/122 (19%), Positives = 39/122 (32%), Gaps = 6/122 (5%)

Query  51   VVLVNRVHL---VTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELL  107
            +VL     L   V QH +   +          L G M  +     L R  +++I T   L
Sbjct  391  LVLTPTRELAIQVRQHIDAVAKFTGI--NTAILVGGMSTQKQQRMLNRHPEIVIATPGRL  448

Query  108  QMALTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLT  167
               +          L     +V+DE     +   +  +      L   +  P  Q L  +
Sbjct  449  WELVKEKHPHLS-NLRQLRCLVIDEADRMVEKGHFAELSQLLEMLNDSQYNPSRQTLVFS  507

Query  168  AS  169
            A+
Sbjct  508  AT  509


>sp|Q9FLB0|RH18_ARATH DEAD-box ATP-dependent RNA helicase 18 OS=Arabidopsis 
thaliana OX=3702 GN=RH18 PE=2 SV=1
Length=593

 Score = 94.1 bits (232),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 55/367 (15%), Positives = 117/367 (32%), Gaps = 47/367 (13%)

Query  152  LKLQRAQPLP-QVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEH  210
             +     P P QV+G+  SP    ++++       +   AN+++  ++  +     ++  
Sbjct  79   RRSTSFPPKPHQVMGVIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKII  138

Query  211  SQQPCKQYNLCHRRSQDPFGDLLKKLMD-------QIHDHLEMPELSRKFGTQMYEQQVV  263
             ++ C        R  D    +  +++D        + +   + E+  +        ++ 
Sbjct  139  EEEGCNVLIGTPGRLSDIMERM--EILDFRNLEILILDEADRLLEMGFQRQVNYIISRLP  196

Query  264  KLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCA  323
            K       +  Q + V  L      + + +    ++                       +
Sbjct  197  KQRRTGLFSATQTEGVEELAKAGLRNPVRVEVRAKSK----------------------S  234

Query  324  ERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSL  383
            E           + L         + K   L  +L +    ++  + I+F  T  S    
Sbjct  235  ESSQQLTNSKTPSGLHLEYMECEADKKSSQLVDLLIK----NSDKKLIVFFMTCASVDYW  290

Query  384  LLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEE  443
             L L +   L+++ +                M Q  + + +  F   +   L+ T VA  
Sbjct  291  GLVLSKIPALKSISL----------IPIHGDMKQNARDKALASFTKASSGALLCTDVAAR  340

Query  444  GLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETL  502
            GLDIP  + VV+Y    +        GR AR  +   A V      E   E +      L
Sbjct  341  GLDIPGIDYVVQYDPPQDPNMFNHRAGRTARLGRQGRAIVFLLPKEEAYVEFMRIRRVPL  400

Query  503  MEQAVAA  509
             E+  + 
Sbjct  401  EERKCSE  407


 Score = 42.1 bits (97),  Expect = 0.017, Method: Composition-based stats.
 Identities = 48/363 (13%), Positives = 100/363 (28%), Gaps = 27/363 (7%)

Query  26   TGAGKTRAAAYVAKRHLETV-----DGAKV--VVLVNRVHLVTQHGEEFRRM---LDGRW  75
            TG+GKT A        L           +V  V++     L TQ     +     L    
Sbjct  62   TGSGKTLAFVVPLVEILRRSTSFPPKPHQVMGVIISPTRELSTQIYNVAQPFVSTLANVN  121

Query  76   TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH  135
            +V  + G               ++LI T   L   +   E  E ++     ++++DE   
Sbjct  122  SVLLVGGREVKADMKIIEEEGCNVLIGTPGRLSDIM---ERMEILDFRNLEILILDEADR  178

Query  136  THKDTVYNVIMSQYLELKLQRAQPLPQVLGL-TASPGTGGASKLDGAINHVLQLCANLDT  194
              +      +        +    P  +  GL +A+   G        + + +++   +  
Sbjct  179  LLEMGFQRQV------NYIISRLPKQRRTGLFSATQTEGVEELAKAGLRNPVRVE--VRA  230

Query  195  WCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKF-  253
                         +  S    +       +      DLL K  D+      M   S  + 
Sbjct  231  KSKSESSQQLTNSKTPSGLHLEYMECEADKKSSQLVDLLIKNSDKKLIVFFMTCASVDYW  290

Query  254  GTQMYEQQVVKLSEAAALAG----LQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDF  309
            G  + +   +K      + G        +  A   +  + ALL  D       +  +   
Sbjct  291  GLVLSKIPALKSISLIPIHGDMKQNARDKALASFTKASSGALLCTDVAARGLDIPGIDYV  350

Query  310  YHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPR  369
               +      +        A    +   +  L        +   + ++   +   S    
Sbjct  351  VQYDPPQDPNMFNHRAGRTARLGRQGRAIVFLLPKEEAYVEFMRIRRVPLEERKCSEDAS  410

Query  370  GII  372
             +I
Sbjct  411  DVI  413


>sp|A2QAB5|ROK1_ASPNC ATP-dependent RNA helicase rok1 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=rok1 PE=3 SV=2
Length=729

 Score = 94.1 bits (232),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 52/253 (21%), Positives = 93/253 (37%), Gaps = 18/253 (7%)

Query  232  LLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDAL  291
            L+  L       L    L R       +  +  L     L   +      L       +L
Sbjct  364  LVNALSANRTKPLATLPLVRNVVLDEADVLLDPLFRDQTLDIWRSCTHPEL-----RASL  418

Query  292  LIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH-LATHGPENPK  350
                    V+ LA       ++ +++T+     R ++ L D     + H L     E  K
Sbjct  419  WSATMGSNVEDLAKSTIKERKDTLSETKSYPLLRLVVGLKDSAIPNIKHKLVYAATEQGK  478

Query  351  LEMLEKILQRQFSSSNSPRG----IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA  406
            L  L ++L    +SS   R     +IFT+T   A +L   L+        DI  +    +
Sbjct  479  LLGLRQLLHPAAASSTDIRLRPPFLIFTQTIPRAVALHSELR-------YDIPPEAGGSS  531

Query  407  GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV  466
              +   + ++   + E++++F+ G + +LV T +   G+D    N VV Y +  +    V
Sbjct  532  RIAVLHSELSDGQRSEIMKQFRKGEIWILVTTDLLARGVDFRGINGVVNYDIPNSAAVYV  591

Query  467  QARGR-ARADQSV  478
               GR  RA +  
Sbjct  592  HRVGRTGRAGREG  604


 Score = 45.2 bits (105),  Expect = 0.002, Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 50/154 (32%), Gaps = 40/154 (26%)

Query  20   IIIWLPTGAGKTR-----AAAYVAKRHLETVDGAKV--VVLVNRVHLVTQHGEEFRRML-  71
            +++  PTG+GKT          + + H E  +   +  VV+     L +Q   E R++  
Sbjct  237  LLVVAPTGSGKTLSFMIPVINKIVRHHHEKPEERGILSVVIAPTKELASQIVNEGRKLAL  296

Query  72   -------------------DGRWTVTTLSGD-------------MGPRAGFGHLARCHDL  99
                               D   +   L  D                 +         D+
Sbjct  297  GTGVKITLMKKGMRVVERDDEDDSKDVLDEDDSESLGSEDDEKATAKNSKGKAPVTKSDI  356

Query  100  LICTAELLQMALTSPEEEEHVELTVFSLIVVDEC  133
            L+ T  LL  AL++   +    L +   +V+DE 
Sbjct  357  LVTTPLLLVNALSANRTKPLATLPLVRNVVLDEA  390


>sp|A5DPU0|MAK5_PICGU ATP-dependent RNA helicase MAK5 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=MAK5 PE=3 
SV=1
Length=754

 Score = 94.1 bits (232),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 71/213 (33%), Gaps = 36/213 (17%)

Query  292  LIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKL  351
            L+     + D    L +   R    K         +L+L + +             NPK 
Sbjct  385  LVFSATFSRDLFGKLSNNKPRN---KESSFIENDEILSLLNTKLQFRDRTPAVIDANPKE  441

Query  352  EMLEKILQRQFSSSNSPR--------------GIIFTRTRQSAHSLLLWLQQQQGLQTVD  397
             +  K+ +       S R               ++F     S   L+ +L          
Sbjct  442  IVSGKVTEALVECGPSERDLYLYYFLLMYPGSTLVFANAIDSVKRLVPFLTNLNIPTF--  499

Query  398  IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD-GTLN---LLVATSVAEEGLDIPHCNVV  453
                        S  + M Q+ +   +++F+  G  N   +L+A+ VA  GLDIP+ + V
Sbjct  500  ------------SIHSSMIQKQRLRALERFKAAGEKNQTAVLIASDVAARGLDIPNIDHV  547

Query  454  VRYGLLTNEISMVQARGR-ARADQSVYAFVATE  485
              Y L  +    V   GR ARA +   + +   
Sbjct  548  AHYHLPRSADVYVHRSGRTARAGKEGVSVMFCS  580


 Score = 50.2 bits (118),  Expect = 6e-05, Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 67/182 (37%), Gaps = 21/182 (12%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTR---AAAY-VAKRHLET-----VDGAKVVVLVNRV  57
            Q + I  AL+GK++I    TG+GKT              LE+          ++      
Sbjct  211  QRKAIPLALQGKDVIGKATTGSGKTLAYGIPILERCLAQLESKTNTIKPPTAMIF-APTR  269

Query  58   HLVTQ---HGEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTS  113
             L  Q   H  +  +     +  + +++G +  +     L+    +L+ T       L  
Sbjct  270  ELAHQVVDHMNKIAKFSPLAQNGIVSITGGLSIQKQERLLSHGPSILVATPGRCLE-LME  328

Query  114  PEEEEHVELTVFSLIVVDECHHTHKDT---VYNVIMSQYLELKLQRAQPLPQV---LGLT  167
               +    + +  +IV+DE     +D     +  I+    + + ++ Q + +    L  +
Sbjct  329  KSVDLVNRMALTDMIVLDEADRLLQDGHFEEFEKILDMLNKHRPKKTQGVSRRWQTLVFS  388

Query  168  AS  169
            A+
Sbjct  389  AT  390


>sp|P0CQ96|SUB2_CRYNJ ATP-dependent RNA helicase SUB2 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=SUB2 PE=3 SV=1
Length=442

 Score = 92.6 bits (228),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 60/182 (33%), Gaps = 21/182 (12%)

Query  338  LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD  397
            L        E  K   L  +L          +  IF ++ Q A  L   LQ+        
Sbjct  278  LQQFYLKLEEREKNRKLNDLLDNL----EFNQVCIFVKSVQRATQLDALLQECNFPSI--  331

Query  398  IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG  457
                           + + Q ++    Q+F+     +LVAT +   G+D+   NVV+ Y 
Sbjct  332  ------------CIHSGLQQAERISRFQQFKAFEKRILVATDIFGRGIDVERVNVVINYD  379

Query  458  LLTNEISMVQARGRARA-DQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQA  516
              ++  S +   GRA        A        +  +E++    E          + +D A
Sbjct  380  APSDADSYLHRVGRAGRFGTKGLAISFVSSDAD--QEVLQRIQERFTVAIPTLPETVDPA  437

Query  517  EY  518
             Y
Sbjct  438  TY  439


 Score = 44.8 bits (104),  Expect = 0.002, Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 52/133 (39%), Gaps = 10/133 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE  65
            Q E I  A+ G +++    +G GKT      A + +E VDG   +++L +   L  Q   
Sbjct  86   QQECIPQAILGTDVLCQAKSGMGKTAVFVLAALQQIEPVDGEVSIIILCHTRELAYQIKN  145

Query  66   EFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHD----LLICTAELLQMALTSPEEEEHV  120
            EF R       V T +     P +    +    +    +++ T         +   ++ +
Sbjct  146  EFTRFSKFMTNVRTGVFYGGTPISADQEILANKEKCPHIVVGTPGRTM----ALVRDKKL  201

Query  121  ELTVFSLIVVDEC  133
              +     V+DEC
Sbjct  202  NASKVKHFVLDEC  214


>sp|P0CQ97|SUB2_CRYNB ATP-dependent RNA helicase SUB2 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=SUB2 PE=3 SV=1
Length=442

 Score = 92.6 bits (228),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 60/182 (33%), Gaps = 21/182 (12%)

Query  338  LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD  397
            L        E  K   L  +L          +  IF ++ Q A  L   LQ+        
Sbjct  278  LQQFYLKLEEREKNRKLNDLLDNL----EFNQVCIFVKSVQRATQLDALLQECNFPSI--  331

Query  398  IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG  457
                           + + Q ++    Q+F+     +LVAT +   G+D+   NVV+ Y 
Sbjct  332  ------------CIHSGLQQAERISRFQQFKAFEKRILVATDIFGRGIDVERVNVVINYD  379

Query  458  LLTNEISMVQARGRARA-DQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQA  516
              ++  S +   GRA        A        +  +E++    E          + +D A
Sbjct  380  APSDADSYLHRVGRAGRFGTKGLAISFVSSDAD--QEVLQRIQERFTVAIPTLPETVDPA  437

Query  517  EY  518
             Y
Sbjct  438  TY  439


 Score = 44.8 bits (104),  Expect = 0.002, Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 52/133 (39%), Gaps = 10/133 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE  65
            Q E I  A+ G +++    +G GKT      A + +E VDG   +++L +   L  Q   
Sbjct  86   QQECIPQAILGTDVLCQAKSGMGKTAVFVLAALQQIEPVDGEVSIIILCHTRELAYQIKN  145

Query  66   EFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHD----LLICTAELLQMALTSPEEEEHV  120
            EF R       V T +     P +    +    +    +++ T         +   ++ +
Sbjct  146  EFTRFSKFMTNVRTGVFYGGTPISADQEILANKEKCPHIVVGTPGRTM----ALVRDKKL  201

Query  121  ELTVFSLIVVDEC  133
              +     V+DEC
Sbjct  202  NASKVKHFVLDEC  214


>sp|Q25225|IF4A_LEIBR Probable eukaryotic initiation factor 4A 
OS=Leishmania braziliensis OX=5660 GN=LbrM01_V2.0740 PE=3 SV=2
Length=403

 Score = 92.2 bits (227),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 49/116 (42%), Gaps = 14/116 (12%)

Query  352  EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ  411
            E     L   + + +  + +IF  TR+    +   L Q                   SS 
Sbjct  252  EHKLDTLMDLYETVSIAQSVIFANTRRKVDWIAEKLNQSN--------------HTVSSM  297

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
               M + D++ V+  F+ G+  +LV T +   G+D+ H N+V+ + L TN+ + + 
Sbjct  298  HAEMPKSDRERVMNTFRSGSSRVLVTTDLVARGIDVHHVNIVINFDLPTNKENYLH  353


 Score = 48.6 bits (114),  Expect = 1e-04, Method: Composition-based stats.
 Identities = 22/132 (17%), Positives = 41/132 (31%), Gaps = 9/132 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT-RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q   I P   G +II    +G GKT   +  + +R     +  + +VL     L  Q  E
Sbjct  53   QQRAIAPFTRGGDIIAQAQSGTGKTGAFSIGLLQRLDFRHNLIQGLVLSPTRELALQTAE  112

Query  66   EFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHD----LLICTAELLQMALTSPEEEEHVE  121
               R+ +                      R       + + T   +   +    +   + 
Sbjct  113  VISRIGEFLSNSAKFCETFVGGTRVQDDLRKLQAGVVVAVGTPGRVSDVI----KRGALR  168

Query  122  LTVFSLIVVDEC  133
                 ++V+DE 
Sbjct  169  TESLRVLVLDEA  180


>sp|Q6CDV4|IF4A_YARLI ATP-dependent RNA helicase eIF4A OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=TIF1 
PE=3 SV=1
Length=395

 Score = 92.2 bits (227),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 50/121 (41%), Gaps = 18/121 (15%)

Query  347  ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA  406
            E+ K E+L  +    + + N  + +IF  TR+    L   L +                 
Sbjct  245  ESYKFEVLCDL----YETINVSQAVIFCNTRRKVDYLTQALTEAD--------------F  286

Query  407  GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV  466
              SS      Q  +  +++ F+ G+  +L+ T +   G+D+   ++V+ + L +N  + +
Sbjct  287  TVSSMHGETEQSQRDVIMKAFRTGSSRILITTDLLARGIDVQQVSLVINFDLPSNRENYI  346

Query  467  Q  467
             
Sbjct  347  H  347


 Score = 51.0 bits (120),  Expect = 2e-05, Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 44/129 (34%), Gaps = 6/129 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q   I+P ++G +++    +G GKT   +    +   E +   + +++     L  Q  +
Sbjct  49   QQRAILPVIKGNDVLAQAQSGTGKTATFSISALQNIDEKIKKPQALIIAPTRELAHQIQK  108

Query  66   EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
                  +          G          +     +++ T   +   +    E   ++  +
Sbjct  109  VVLAFGEYMKIECHACIGGTSVAEDIRVIQEGVHVIVGTPGRIHDMI----ERRILKTDL  164

Query  125  FSLIVVDEC  133
              + ++DE 
Sbjct  165  IKMFILDEA  173


>sp|Q9DBN9|DDX59_MOUSE Probable ATP-dependent RNA helicase DDX59 
OS=Mus musculus OX=10090 GN=Ddx59 PE=1 SV=1
Length=619

 Score = 93.7 bits (231),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 74/180 (41%), Gaps = 20/180 (11%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K + L +IL  Q      P  ++F   +  A  L   +Q+             + G  ++
Sbjct  429  KKKKLFEILNDQ--KLFKPPVLVFVDCKLGADLLSEAVQK-------------ITGLNST  473

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
            S  +  +Q +++++++   +G   ++V+T V   GLD+ +  +VV + + ++    V   
Sbjct  474  SIHSEKSQVERRDILKGLLEGDYEVVVSTGVLGRGLDLVNVKLVVNFDMPSSMDEYVHQV  533

Query  470  GR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQ  527
            GR  R  Q+  A       S+ L  ++      T    ++   Q ++      + R  QQ
Sbjct  534  GRVGRLGQNGTAITFINNNSKRLFWDVAKRVKPT---GSILPPQLLNSPYLHEQKRKEQQ  590


 Score = 65.2 bits (157),  Expect = 1e-09, Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 13/133 (10%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK---VVVLVNRVHLVTQ-  62
            Q ++I   L G++I+    TG+GKT  AA++    +      K    ++L     L  Q 
Sbjct  230  QMQMIPVGLLGRDILASADTGSGKT--AAFLLPVIIRAFSEDKTPSALILTPTRELAIQI  287

Query  63   --HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
                +E    L    TV  + G   P   +  L +   ++I T   L   +    ++  V
Sbjct  288  ERQAKELMSGLPRMKTVLLVGGLPLPPQLY-RLRQHVKVIIATPGRLLDII----KQSSV  342

Query  121  ELTVFSLIVVDEC  133
             L+   ++VVDE 
Sbjct  343  SLSGIKIVVVDEA  355


>sp|O62591|IF4A_LEIMA Probable eukaryotic initiation factor 4A 
OS=Leishmania major OX=5664 GN=LmjF.01.0770 PE=3 SV=1
Length=403

 Score = 92.2 bits (227),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 49/116 (42%), Gaps = 14/116 (12%)

Query  352  EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ  411
            E     L   + + +  + +IF  TR+    +   L Q                   SS 
Sbjct  252  EHKLDTLMDLYETVSIAQSVIFANTRRKVDWIAEKLNQSN--------------HTVSSM  297

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
               M + D++ V+  F+ G+  +LV T +   G+D+ H N+V+ + L TN+ + + 
Sbjct  298  HAEMPKSDRERVMNTFRSGSSRVLVTTDLVARGIDVHHVNIVINFDLPTNKENYLH  353


 Score = 48.3 bits (113),  Expect = 2e-04, Method: Composition-based stats.
 Identities = 22/132 (17%), Positives = 42/132 (32%), Gaps = 9/132 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT-RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q   I P   G +II    +G GKT   +  + +R     +  + +VL     L  Q  E
Sbjct  53   QQRAIAPFTRGGDIIAQAQSGTGKTGAFSIGLLQRLDFRHNLIQGLVLSPTRELALQTAE  112

Query  66   EFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHD----LLICTAELLQMALTSPEEEEHVE  121
               R+ +     +                R       + + T   +   +    +   + 
Sbjct  113  VISRIGEFLSNSSKFCETFVGGTRVQDDLRKLQAGVIVAVGTPGRVSDVI----KRGALR  168

Query  122  LTVFSLIVVDEC  133
                 ++V+DE 
Sbjct  169  TESLRVLVLDEA  180


>sp|A4HRK0|IF4A_LEIIN Probable eukaryotic initiation factor 4A 
OS=Leishmania infantum OX=5671 GN=LinJ01.0780 PE=3 SV=1
Length=403

 Score = 92.2 bits (227),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 49/116 (42%), Gaps = 14/116 (12%)

Query  352  EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ  411
            E     L   + + +  + +IF  TR+    +   L Q                   SS 
Sbjct  252  EHKLDTLMDLYETVSIAQSVIFANTRRKVDWIAEKLNQSN--------------HTVSSM  297

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
               M + D++ V+  F+ G+  +LV T +   G+D+ H N+V+ + L TN+ + + 
Sbjct  298  HAEMPKSDRERVMNTFRSGSSRVLVTTDLVARGIDVHHVNIVINFDLPTNKENYLH  353


 Score = 48.3 bits (113),  Expect = 2e-04, Method: Composition-based stats.
 Identities = 22/132 (17%), Positives = 42/132 (32%), Gaps = 9/132 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT-RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q   I P   G +II    +G GKT   +  + +R     +  + +VL     L  Q  E
Sbjct  53   QQRAIAPFTRGGDIIAQAQSGTGKTGAFSIGLLQRLDFRHNLIQGLVLSPTRELALQTAE  112

Query  66   EFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHD----LLICTAELLQMALTSPEEEEHVE  121
               R+ +     +                R       + + T   +   +    +   + 
Sbjct  113  VISRIGEFLSNSSKFCETFVGGTRVQDDLRKLQAGVIVAVGTPGRVSDVI----KRGALR  168

Query  122  LTVFSLIVVDEC  133
                 ++V+DE 
Sbjct  169  TESLRVLVLDEA  180


>sp|Q9DGP9|DDX25_XENLA ATP-dependent RNA helicase DDX25 OS=Xenopus 
laevis OX=8355 GN=deadsouth PE=2 SV=1
Length=483

 Score = 92.9 bits (229),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 35/176 (20%), Positives = 63/176 (36%), Gaps = 25/176 (14%)

Query  352  EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ  411
            E     L   +      + I+F +TR+ A  L   L                 G   +  
Sbjct  323  EQKYSALCNLYGVITIAQAIVFCQTRKIASWLSQKLSDD--------------GHQVALL  368

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE------ISM  465
            S  +   D+ ++IQ+F++G   +LV T+V   G+D+   ++VV + L  N        + 
Sbjct  369  SGELPVYDRADMIQRFREGREKVLVTTNVCARGIDVEQVSIVVNFDLPVNVDGSVDFETY  428

Query  466  VQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA  520
            +   GR  R  +   A    E         + + +E      +  +  MD  E   
Sbjct  429  LHRIGRTGRFGKKGIAVSLIENFFVY----MLKEIEDHFNTKITKLNSMDMDEMGK  480


 Score = 45.2 bits (105),  Expect = 0.002, Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 41/119 (34%), Gaps = 9/119 (8%)

Query  18   KNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK---VVVLVNRVHLVTQHGEEFRRMLDGR  74
            +N+I    +G GKT  AA+V           K    + L     L  Q G+    M    
Sbjct  137  QNLIAQSQSGTGKT--AAFVLAMLSRVDANKKYPQCICLSPTFELALQTGKVVEEMGKFC  194

Query  75   WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC  133
              +  +    G R G G       ++I T   +        +   + +   S+ V+DE 
Sbjct  195  AGIEVIYALRGNRPGKGSRLEA-QIVIGTPGTVLD---WCFKLRLITVENISVFVLDEA  249


>sp|Q54TD7|DDX24_DICDI ATP-dependent RNA helicase ddx24 OS=Dictyostelium 
discoideum OX=44689 GN=ddx24 PE=3 SV=1
Length=940

 Score = 94.1 bits (232),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 76/502 (15%), Positives = 156/502 (31%), Gaps = 84/502 (17%)

Query  43   ETVDGAKVVVLV--NRVHLVTQHGEEFRRMLDGRW-TVTTLSGDMGPRAGFGHLARCHDL  99
             + +  K+  LV      L  Q     + ++      V ++ G M  +     L++  ++
Sbjct  398  RSKEYRKLFSLVICPTRELAIQVTNHIKSIISHTNLKVISIVGGMASQRQQRVLSKRPEI  457

Query  100  LICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQP  159
            ++ T   L   +T   +   VEL     + +DE     +   +  + S    L + R   
Sbjct  458  VVATPGRLWELITEGHQH-LVELESLLCLGIDEADRMVEQGHFAELESILKTLPIHR---  513

Query  160  LPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYN  219
                   TA                 +     L        +N   ++ + + +  +   
Sbjct  514  -------TA-----------------MSKKERLKKKETEEKRNKRRKVDKLNDK-GEMIK  548

Query  220  LCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRV  279
                   D   D          +  E+ +  +   T  +++Q    S  A L  +     
Sbjct  549  GDQDDMDDQIPD---------EEMEELEQEEQNHLTTTHKRQTFVFS--ATLVNIPGDGA  597

Query  280  YALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELA  339
                 ++Y     I      ++ +   +D+          I   ++RL A        L 
Sbjct  598  PTSQKKKYRKLTPIE---NLIEKVRFQRDYKL--------IDVTQKRLTA------KNLL  640

Query  340  HLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIR  399
                      K   L   ++R        R ++F  +   A  L+      +        
Sbjct  641  ETKIFCNLEEKDMYLYYFVERY-----PGRTLVFVNSIDCARRLIPIFNILEVPVF----  691

Query  400  AQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL  459
                      +    M Q+ + + + +F+     +L+AT VA  GLDIP    V+ Y + 
Sbjct  692  ----------ALHAQMQQKQRLKNLDRFRTLDNVVLIATDVAARGLDIPLVQHVIHYQVP  741

Query  460  TNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM----D  514
                  +   GR AR+DQ   + V            ++ ++E  +      ++ M    D
Sbjct  742  RTTQLYIHRSGRTARSDQDGISVVLVTPKERPLYIKLDSSIEHDIGNFPTDIRYMEGVRD  801

Query  515  QAEYQAKIRDLQQAALTKRAAQ  536
            + E   +I  L   +L     +
Sbjct  802  RIELAKEIDKLSHQSLKDNREK  823


>sp|Q1DI07|SUB2_COCIM ATP-dependent RNA helicase SUB2 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=SUB2 PE=3 SV=1
Length=443

 Score = 92.6 bits (228),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 79/229 (34%), Gaps = 24/229 (10%)

Query  285  RRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATH  344
            R   +        + V   +A      R    K      E  +        + L      
Sbjct  226  RDVQEIFRSTPADKQVMMFSATLSQEIRPICKKFMRNPLEVYVDDDTKLTLHGLQQYYIK  285

Query  345  GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI  404
              E  K   L ++L          + IIF ++   A+ L   L++               
Sbjct  286  LSEAEKNRKLNELLDNL----EFNQVIIFVKSTLRANELDKLLRECNFPSI---------  332

Query  405  GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
                 +  + ++Q ++ +  ++F++    + VAT V   G+DI   N+ + Y +  +  S
Sbjct  333  -----AVHSGVSQEERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDMPADADS  387

Query  465  MVQARGRARADQS---VYAFVATEGSRELKRELINE---ALETLMEQAV  507
             +   GRA    +     +FV++E   +  +++      AL    E+ V
Sbjct  388  YLHRVGRAGRFGTKGLSISFVSSEDDMKTLKDIEKRFEVALPEYPEEGV  436


 Score = 49.0 bits (115),  Expect = 1e-04, Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 47/135 (35%), Gaps = 14/135 (10%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG-AKVVVLVNRVHLVTQ---  62
            Q   I  A+   +++    +G GKT          LE V G   ++V+ +   L  Q   
Sbjct  87   QQVCIPTAILKVDVLCQAKSGLGKTAVFVLTTLNQLEPVPGECSILVMCHTRELAYQIKN  146

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHD----LLICTAELLQMALTSPEEEE  118
                F + L    T     G   P      +    D    +++ T   L  AL   ++  
Sbjct  147  EYARFSKYLPDVKTAVFYGG--TPMQKDIEVLSSKDTYPNIVVGTPGRL-NALVREKK--  201

Query  119  HVELTVFSLIVVDEC  133
             + L      V+DEC
Sbjct  202  -LSLRNIKAFVLDEC  215


>sp|Q5BET6|ROK1_EMENI ATP-dependent RNA helicase rok1 OS=Emericella 
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 
194 / M139) OX=227321 GN=rok1 PE=3 SV=1
Length=742

 Score = 93.7 bits (231),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 53/294 (18%), Positives = 102/294 (35%), Gaps = 25/294 (9%)

Query  232  LLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDAL  291
            L+  L D     L    L R       +  +  L     L   +      L       +L
Sbjct  369  LVNALSDNKTKPLATLPLVRNLVLDEADVLLDPLFRDQTLDIWRSCTHPEL-----RASL  423

Query  292  LIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH-LATHGPENPK  350
                   +++ +A       +  + +T+     R ++ L D     + H L     E  K
Sbjct  424  WSATMGSSIEDMAKTTIKERKLSLPQTKSYPLLRLVVGLKDSAIPNIKHKLVYAATEQGK  483

Query  351  LEMLEKILQRQFSSSNSPRG----IIFTRTRQSAHSL-LLWLQQQQGLQTVDIRAQLLIG  405
            L  L +++    ++++  R     +IFT+T   A +L    L           R  +L  
Sbjct  484  LLGLRQLIHPTAATTSDVRLRPPFLIFTQTIPRAIALHSELLYDIPPEAGGSARIAVL--  541

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM  465
                   + ++   + ++++ F+ G + +LV T +   G+D    N VV Y +  +    
Sbjct  542  ------HSDLSDTQRSDIMKGFRKGEIWILVTTDLLARGVDFRGINGVVNYDIPNSPAVY  595

Query  466  VQARGR----ARADQSVYAFVATEGSRELK--RELINEALETLMEQAVAAVQKM  513
            V   GR     R       +   E    +K    +I+ + +   E    +VQK 
Sbjct  596  VHRVGRTGRAGREGGVAVTYYTKEDIPYVKSIANIIDVSEKLRGENGERSVQKW  649


 Score = 46.3 bits (108),  Expect = 0.001, Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 48/153 (31%), Gaps = 40/153 (26%)

Query  20   IIIWLPTGAGKTRAAAYV-----AKRHLETVDGAKVVV---LVNRVHLVTQHGEEFRRM-  70
            +++  PTG+GKT  +  +       RH  T    + +    +     L +Q   E R++ 
Sbjct  244  LLVVAPTGSGKTL-SFMIPVINKIVRHHHTHPEERGIFAVVVAPTKELASQIVNEGRKLA  302

Query  71   --LDGRWTVTTLSGDMGPRAGFGHLAR----------------------------CHDLL  100
                 + T+      +  R                                      D+L
Sbjct  303  LGTGVKVTLMKKGMRVVERENEDEDVLDESNSESSESESDERTPNNKNKGPVPITKSDIL  362

Query  101  ICTAELLQMALTSPEEEEHVELTVFSLIVVDEC  133
            + T   L  AL+  + +    L +   +V+DE 
Sbjct  363  VSTPLQLVNALSDNKTKPLATLPLVRNLVLDEA  395


>sp|Q54E49|DDX6_DICDI Probable ATP-dependent RNA helicase ddx6 
OS=Dictyostelium discoideum OX=44689 GN=ddx6 PE=3 SV=1
Length=423

 Score = 92.2 bits (227),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 52/350 (15%), Positives = 103/350 (29%), Gaps = 31/350 (9%)

Query  165  GLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRR  224
            G TAS       K D   + +  L         +     C +L ++         +    
Sbjct  98   GKTASFLIPALEKTDPTKDVIQVLILVPTRELALQTSQVCKELGKYMN-----VQVMAST  152

Query  225  SQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHL  284
                  D + +L + +H  +  P           ++ V  LS    +   +  ++ +   
Sbjct  153  GGTSLKDDIMRLYNPVHILVATPGRVLDLA----QKNVANLSNCHTMIMDEADKLLSQEF  208

Query  285  RRYNDALL-IHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLAT  343
            +   + L+      R +   +A      +    K   L     +  + +     +     
Sbjct  209  QPLVEQLINFLPQQRQILLFSATFPVTVKSF--KEHYLQQAFEINLMEELTLKGVTQYYA  266

Query  344  HGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLL  403
               E  K+      L   FS     + IIF  +      L   + +              
Sbjct  267  FVEERQKI----HCLNTLFSKLQINQSIIFCNSVNRVELLAKKITE--------------  308

Query  404  IGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI  463
            +G         M Q  +  V   F++G    LV++ +   G+DI   NVV+ +    +  
Sbjct  309  LGYSCFFIHAKMVQAHRNRVFHDFRNGACRNLVSSDLFTRGIDIQDVNVVINFDFPKHSE  368

Query  464  SMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQK  512
            + +   GR  R      A              I + L T ++     + K
Sbjct  369  TYLHRIGRSGRFGHLGLAINLITYEDRFSLYKIEQELGTEIKPIPPVIDK  418


 Score = 49.4 bits (116),  Expect = 8e-05, Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 50/131 (38%), Gaps = 10/131 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA---KVVVLVNRVHLVTQH  63
            Q + I  AL G++I+     G GKT  A+++     +T       +V++LV    L  Q 
Sbjct  76   QEKAIPIALAGRDIMARAKNGTGKT--ASFLIPALEKTDPTKDVIQVLILVPTRELALQT  133

Query  64   GEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
             +  + +       V   +G    +     L     +L+ T   +        ++    L
Sbjct  134  SQVCKELGKYMNVQVMASTGGTSLKDDIMRLYNPVHILVATPGRVLD----LAQKNVANL  189

Query  123  TVFSLIVVDEC  133
            +    +++DE 
Sbjct  190  SNCHTMIMDEA  200


>sp|Q75BL8|IF4A_EREGS ATP-dependent RNA helicase eIF4A OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=TIF1 PE=3 SV=1
Length=396

 Score = 91.8 bits (226),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 48/116 (41%), Gaps = 14/116 (12%)

Query  352  EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ  411
            E     L   + S +  + +IF  TR+    L   L                     S+ 
Sbjct  246  EYKYDCLSDLYDSISVTQAVIFCNTRRKVEELTKRLTDDS--------------FTVSAI  291

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
             + + Q  +  ++++F+ G+  +L++T +   G+D+   ++V+ Y L  N+ + + 
Sbjct  292  YSDLPQAQRDTIMKEFRTGSSRILISTDLLARGIDVQQVSLVINYDLPNNKENYIH  347


 Score = 61.4 bits (147),  Expect = 1e-08, Method: Composition-based stats.
 Identities = 37/211 (18%), Positives = 71/211 (34%), Gaps = 15/211 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT---RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ-  62
            Q   I+P +EG +++    +G GKT     AA   +R  E++   + ++L     L  Q 
Sbjct  49   QQRAILPIIEGHDVLAQAQSGTGKTGTFSIAAL--QRIDESIKAPQALILAPTRELALQI  106

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
                    L     V    G   PR     L     +++ T   +   +    E  + + 
Sbjct  107  QKVVMALALHMDVKVHACIGGTDPREDAEALRAGAQIVVGTPGRVFDMI----ERRNFKT  162

Query  123  TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAI  182
                + ++DE            I   +  L      P  QV+ L+A+         D  +
Sbjct  163  DHIKMFILDEADEMLSSGFKEQIYKIFTMLP-----PTTQVVLLSATMPKEVLDVTDKFM  217

Query  183  NHVLQLCANLDTWCIMSPQNCCPQLQEHSQQ  213
            N  +++    D   +   Q     ++    +
Sbjct  218  NKPVRILVKKDALTLEGIQQYYINVESEEYK  248


>sp|Q10PV9|RH47B_ORYSJ DEAD-box ATP-dependent RNA helicase 47B 
OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0219700 PE=2 
SV=1
Length=573

 Score = 93.3 bits (230),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 40/216 (19%), Positives = 77/216 (36%), Gaps = 9/216 (4%)

Query  288  NDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPE  347
              A +    +RA  +            V     +   R +L+  D   N  ++       
Sbjct  340  VSATIPFSVIRAARSWGHDPVLVRAMSVVPLDSITVPRPVLSQTDANPNSPSNSVNQAAV  399

Query  348  N---PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI  404
            N   P LE    I + Q       R I        A +++ ++   + L+ V  + +   
Sbjct  400  NSLPPSLEHYYCISKAQHKVDTLRRCI----HALEAQTVIAFMNNTKPLKDVVFKLEAR-  454

Query  405  GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
            G   +     + +  +  V++KF+DG   +LV   ++  GLD+P C++V+   L T+   
Sbjct  455  GMKATELHGDLGKLARSTVLKKFKDGEFRVLVTNELSARGLDVPECDLVINLDLPTDSTH  514

Query  465  MVQARGR-ARADQSVYAFVATEGSRELKRELINEAL  499
                 GR  R  +        E +       + + L
Sbjct  515  YAHRAGRTGRLGRKGTVVTICEETETFVVRKMRKQL  550


 Score = 42.5 bits (98),  Expect = 0.014, Method: Composition-based stats.
 Identities = 28/156 (18%), Positives = 50/156 (32%), Gaps = 21/156 (13%)

Query  26   TGAGKTRAAAYVAKRHL------------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDG  73
            TG+GKT A        +            +   G + V++     L  Q   E  ++L  
Sbjct  177  TGSGKTLAYLLPILSEIGPLKRPTEQDGSDKRSGVEAVIVAPSRELGMQIVREVEKILGP  236

Query  74   --RWTVTTLSGDMGPRAGFGHLARCHDLLIC-TAELLQMALTSPEEEEHVELTVFSLIVV  130
              +  V  L G          L +   L++  T   +       +   H        +V+
Sbjct  237  NDKRLVQQLVGGANRSRQEEALKKNKPLIVVGTPGRISEISAGGKLHTHGCR----FLVL  292

Query  131  DECHHTHKDTVYNVIMSQYLELKLQRAQPLPQ-VLG  165
            DE         Y   M + LE   +++    + +LG
Sbjct  293  DEVDQLLS-FNYREDMHRILEHVGRKSGTSSRDILG  327


>sp|P0CR04|ROK1_CRYNJ ATP-dependent RNA helicase ROK1 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=ROK1 PE=3 SV=1
Length=620

 Score = 93.3 bits (230),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 53/154 (34%), Gaps = 19/154 (12%)

Query  345  GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI  404
            G E+ KL  L  ++    S       +IF ++   A  L   L              +L 
Sbjct  403  GSESGKLLALRNLIS---SGQLPYPSLIFVQSIDRAEELYKTL--------------VLD  445

Query  405  GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
            G    +      +  + E I+ F+ G + +LV T V   G+D     VV+ Y       S
Sbjct  446  GIKVDAVHGGKAKTKRDEAIKDFRVGAVWMLVVTEVLARGMDFRGVKVVINYDFPQTVPS  505

Query  465  MVQARGR-ARADQSVYAF-VATEGSRELKRELIN  496
             +   GR  RA +   A            R + N
Sbjct  506  YIHRIGRTGRAGRPGKAITFFNIEDGPYLRTIAN  539


 Score = 44.8 bits (104),  Expect = 0.003, Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 30/88 (34%), Gaps = 10/88 (11%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA----------KVVVLVNRVHLVTQHG  64
            LE ++ +   PTG+GKT +        L                + +V+V    L  Q  
Sbjct  158  LEDRDTLCVAPTGSGKTLSYVLPTIVKLREPARKLKGTEEGKGVRALVVVPTHDLAVQIQ  217

Query  65   EEFRRMLDGRWTVTTLSGDMGPRAGFGH  92
               + +  GR   + +      +A +  
Sbjct  218  GVIKAVTMGRHWRSMVLTKATEKAVWES  245


>sp|P0CR05|ROK1_CRYNB ATP-dependent RNA helicase ROK1 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=ROK1 PE=3 SV=1
Length=620

 Score = 93.3 bits (230),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 53/154 (34%), Gaps = 19/154 (12%)

Query  345  GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI  404
            G E+ KL  L  ++    S       +IF ++   A  L   L              +L 
Sbjct  403  GSESGKLLALRNLIS---SGQLPYPSLIFVQSIDRAEELYKTL--------------VLD  445

Query  405  GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
            G    +      +  + E I+ F+ G + +LV T V   G+D     VV+ Y       S
Sbjct  446  GIKVDAVHGGKAKTKRDEAIKDFRVGAVWMLVVTEVLARGMDFRGVKVVINYDFPQTVPS  505

Query  465  MVQARGR-ARADQSVYAF-VATEGSRELKRELIN  496
             +   GR  RA +   A            R + N
Sbjct  506  YIHRIGRTGRAGRPGKAITFFNIEDGPYLRTIAN  539


 Score = 44.8 bits (104),  Expect = 0.003, Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 30/88 (34%), Gaps = 10/88 (11%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA----------KVVVLVNRVHLVTQHG  64
            LE ++ +   PTG+GKT +        L                + +V+V    L  Q  
Sbjct  158  LEDRDTLCVAPTGSGKTLSYVLPTIVKLREPARKLKGTEEGKGVRALVVVPTHDLAVQIQ  217

Query  65   EEFRRMLDGRWTVTTLSGDMGPRAGFGH  92
               + +  GR   + +      +A +  
Sbjct  218  GVIKAVTMGRHWRSMVLTKATEKAVWES  245


>sp|A7TEG8|MAK5_VANPO ATP-dependent RNA helicase MAK5 OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=MAK5 PE=3 SV=1
Length=763

 Score = 93.7 bits (231),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 44/266 (17%), Positives = 81/266 (30%), Gaps = 39/266 (15%)

Query  355  EKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH  414
              +    F S    + +IF     S   L  +L        ++I    +         + 
Sbjct  463  RDLFCYYFVSMYPGKTLIFCNAIDSVKKLTAYLNN------LNISCFQI--------HSS  508

Query  415  MTQRDQQEVIQKFQD--------GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV  466
            MTQ+++   ++++Q         G   +LV + VA  GLDIP    V+ Y L       +
Sbjct  509  MTQKNRLRNLERYQQQSEKNKILGKPTVLVGSDVAARGLDIPGIQHVIHYHLPRTADVYI  568

Query  467  QARGR-ARADQSVYAFVAT--EGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIR  523
               GR ARA+    + +    E +    R+L         +  +   +K  +      I 
Sbjct  569  HRSGRTARANNEGVSVMICSPEEAMGPLRKLRKTLANKSGKDIIMGKKKWQKTVTMLPID  628

Query  524  D--LQQAALTKRAAQAAQRENQRQQFPVEHVQLLCINCMVAVGHGSDLRKVEGTHHVNVN  581
            D  L Q     R A      +       +    +          G D+         + +
Sbjct  629  DTILSQLKERSRLASELADHDLASSSLQKDDTWMKKAAEDL---GVDI---------DSD  676

Query  582  PNFSNYYNVSRDPVVINKVFKDWKPG  607
                + +         NK     +  
Sbjct  677  DEIKDTFLAKNINKKRNKTLGKDQKK  702


 Score = 53.6 bits (127),  Expect = 5e-06, Method: Composition-based stats.
 Identities = 27/145 (19%), Positives = 51/145 (35%), Gaps = 15/145 (10%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTR-----AAAYVAKRHLETVDGAKVVVLVNRVHLVT  61
            Q E I  AL+G++I+    TG+GKT          + K    T     +        L  
Sbjct  219  QEEAIPMALKGEDIMGKASTGSGKTLAYGIPIIEKLMKSKSNTAPIGLIF--TPTRELAK  276

Query  62   QHGEEFRRML-----DGRWTVTTLSGDMGPRAGFGHLA--RCHDLLICTAELLQMALTSP  114
            Q  +  R++           + +L+G +  +     L       +++ T       L   
Sbjct  277  QVTDHLRKIASLIVDKSPHAILSLTGGLSIQKQERLLKYEGSGRIVVATPGRFLE-LIEK  335

Query  115  EEEEHVELTVFSLIVVDECHHTHKD  139
            ++      +  S +V+DE     +D
Sbjct  336  DKTLVERFSQISTLVLDEADRLLQD  360


>sp|A5E2I8|SPB4_LODEL ATP-dependent rRNA helicase SPB4 OS=Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=SPB4 PE=3 SV=1
Length=637

 Score = 93.3 bits (230),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 79/201 (39%), Gaps = 14/201 (7%)

Query  343  THGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL  402
               PE+    ML+ +   QF      + I++  T  S       L +       DI    
Sbjct  260  MIEPEHKLTTMLQMLRDNQFK-----KAIVYFPTCTSVKHFYQMLSKLCKSSANDIDISA  314

Query  403  LIGAGNSSQSTHMTQRDQQEVIQKFQDG----TLNLLVATSVAEEGLDIPHCNVVVRYGL  458
            L+     S    +T + +   ++KF +G       +L+AT VA  G+DIP  ++V++   
Sbjct  315  LL---FFSLHGQLTTKSRLNTLEKFTEGNDESKKYILMATDVAARGIDIPDVDLVIQIDP  371

Query  459  LTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAE  517
             T+    +   GR  RA++   A V      + +  +    ++++    +   +  D   
Sbjct  372  PTDPSVFLHRCGRTGRANKVGRAIVMLNNDTQEEDYVGFMEVKSVFMTKIDPPEDKDNHS  431

Query  518  YQAKI-RDLQQAALTKRAAQA  537
            +  K  + L++  L  RA   
Sbjct  432  FHNKFQKKLRKYMLEDRARHE  452


 Score = 44.0 bits (102),  Expect = 0.005, Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 51/143 (36%), Gaps = 31/143 (22%)

Query  18   KNIIIWLPTGAGKTRA-AAYVAKRHLE---------------TVDGAKVVVLVNRVHLVT  61
            K++I+   TG+GKT A A  V ++  +                      +V+     L  
Sbjct  48   KDVIVEAVTGSGKTLAFAIPVLQKVSKRLYQVPEGEEKPEPVKRGHMLAIVMAPTRELAK  107

Query  62   QHGEEFRRML---------DGRWTVTTLSGDMGPRAGFGHLARCH--DLLICTAELLQMA  110
            Q    F ++L         + R     L G +G         + +   +LI T   L   
Sbjct  108  QIQMVFDKVLELLPEEDSYEPRIKTQLLVGFLGNVREDLDSYQENRPQILIATPGRLLDF  167

Query  111  LTSPEEEEHVELTVFSLIVVDEC  133
            ++     + V+ +   ++++DE 
Sbjct  168  MS----LQIVKTSSLEIVILDEA  186


>sp|Q59ZH9|MAK5_CANAL ATP-dependent RNA helicase MAK5 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=MAK5 
PE=3 SV=2
Length=782

 Score = 93.7 bits (231),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 69/195 (35%), Gaps = 33/195 (17%)

Query  310  YHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPR  369
              R    K+  L     ++ L +++        T    NPK  +  +I +       + R
Sbjct  416  LDRHQKGKSSSLMGNDEIVQLLNEKLKFKDKKPTLVDANPKEIVSGQITEALVECGPTER  475

Query  370  --------------GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHM  415
                           ++F  +  S   L+  L                      S  + M
Sbjct  476  DLYLYYFLLMYKGSTLVFANSIDSVKRLVPLLNNLNIPAF--------------SIHSSM  521

Query  416  TQRDQQEVIQKFQD----GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
             Q+ +   ++KF++      + +LVA+ VA  GLDIP+ + VV Y L  +    +   GR
Sbjct  522  IQKQRLRALEKFKEASQKNEVAVLVASDVAARGLDIPNIDHVVHYHLPRSADVYIHRSGR  581

Query  472  -ARADQSVYAFVATE  485
             ARA +   + +   
Sbjct  582  TARAGKEGVSVMFCS  596


 Score = 54.4 bits (129),  Expect = 3e-06, Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 65/186 (35%), Gaps = 25/186 (13%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTR---AAAY----VAKRHLETVDGAK-------VVV  52
            Q E I  AL GK++I    TG+GKT             +   ++  +  K       ++ 
Sbjct  224  QKETIPIALSGKDVIGKATTGSGKTLAYGIPILEKYIQSLNLIKQNNKDKKINHPTGIIF  283

Query  53   LVNRVHLVTQHGEEFRRMLDGR----WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQ  108
                  L  Q  +   ++          + +++G +  +     L     +++ T   + 
Sbjct  284  -APTRELAHQVVDHLNKLAKYSPLSTRGIVSITGGLSIQKQQRLLRHGPGIIVATPGRML  342

Query  109  MALTSPEEEEHVELTVFSLIVVDECHHTHKD---TVYNVIMSQY--LELKLQRAQPLPQV  163
              L   + E    L    +IV+DE     +D     +  I+  +     K +  +   Q 
Sbjct  343  E-LVQGDSELAKRLASIDIIVLDEADRLLQDGHFDEFEKILELFGKNRPKSKSIEWKWQT  401

Query  164  LGLTAS  169
            L  +A+
Sbjct  402  LVFSAT  407


>sp|A7TGW7|DBP10_VANPO ATP-dependent RNA helicase DBP10 OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 
21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=DBP10 PE=3 SV=1
Length=977

 Score = 93.7 bits (231),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 76/226 (34%), Gaps = 31/226 (14%)

Query  264  KLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCA  323
            K+SE   +  L  +     +   Y    +I   +   D +  L DF      + ++    
Sbjct  331  KISENLEILFLSTKNEERENNLLYLLQDVIKIPLGTDDQIKKLSDFNKSLSDSDSEDEDN  390

Query  324  ERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSL  383
            + +  +    +               K + L+     +  +  S   I+F  TR     +
Sbjct  391  KGKQNSRKSKKG--------------KFQKLKVSASNELPTEKST--IVFAPTRHHVEYI  434

Query  384  LLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEE  443
               L+              L G         + Q  ++  +  F+ G  ++LV T VA  
Sbjct  435  TQLLKDS------GFLVSYLYGT--------LDQHARKRQLLNFRAGLTSILVVTDVAAR  480

Query  444  GLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSR  488
            G+DIP    V+ Y L  +    +   GR ARA    +A+     + 
Sbjct  481  GVDIPMLANVINYSLPASSKIFIHRVGRTARAGNRGWAYSIVSETE  526


 Score = 59.4 bits (142),  Expect = 1e-07, Method: Composition-based stats.
 Identities = 49/279 (18%), Positives = 91/279 (33%), Gaps = 21/279 (8%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA---KVVVLVNRVHLVTQHGEEFRRML  71
            L+ ++I+    TG+GKT A        L++       + V+L     L  Q    F+   
Sbjct  156  LQKRDIVGMARTGSGKTAAFVLPMIEKLKSHSSKIGARAVILSPSRELALQTHRVFKEFS  215

Query  72   DG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV  130
             G       L+G       F  +    D+++ T           + E  ++L     +V 
Sbjct  216  KGTHLRSVLLTGGDSLEDQFSMMMSNPDVIVATPGRFLH----LKVEMSLDLKTVEYVVF  271

Query  131  DECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS-PGTGGASKLDGAINHVL---  186
            DE         + +   + L   L       Q L  +A+ P +       G  N VL   
Sbjct  272  DEADRL-----FEMGFQEQLNELLAALPMNRQTLLFSATLPSSLVDFAKAGLTNPVLVRL  326

Query  187  ----QLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHD  242
                ++  NL+   + +          +  Q   +  L          D  K L D   +
Sbjct  327  DAETKISENLEILFLSTKNEERENNLLYLLQDVIKIPLGTDDQIKKLSDFNKSLSDSDSE  386

Query  243  HLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYA  281
              +         ++  + Q +K+S +  L   +   V+A
Sbjct  387  DEDNKGKQNSRKSKKGKFQKLKVSASNELPTEKSTIVFA  425


>sp|A5DY34|DRS1_LODEL ATP-dependent RNA helicase DRS1 OS=Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=DRS1 PE=3 SV=1
Length=686

 Score = 93.3 bits (230),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 81/216 (38%), Gaps = 29/216 (13%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K E L+  +          R ++FTRT+  AH      + +  L  + +    L GA   
Sbjct  424  KREELKPAVLYLLLKKLEGRTVVFTRTKVEAH------KLRIILGLLGLTVAELHGA---  474

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 +TQ  +   ++ F++  +N+L+ T +A  GLDI     V+ Y +           
Sbjct  475  -----LTQEQRLANVKAFKN-NVNVLICTDLAARGLDI-RIEYVINYDMPKTYEIYTHRV  527

Query  470  GR-ARADQSVYAFVATEGSRELKRELINEALETLME-----------QAVAAVQKMDQAE  517
            GR ARA +   +      S +  R ++  A++               + +    K+++  
Sbjct  528  GRTARAGRKGTSISFVGESMQ-DRNIVKNAIQFNSRSVARKIDWDEVEKIQTKIKLNEGA  586

Query  518  YQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQ  553
             +  I + +QA    RA     +     ++  E   
Sbjct  587  IEEVIEEEKQAREIMRAEMQLNKAENLMKYEKEIKS  622


 Score = 59.0 bits (141),  Expect = 1e-07, Method: Composition-based stats.
 Identities = 28/136 (21%), Positives = 52/136 (38%), Gaps = 12/136 (9%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVA-----KRHLETVDGAKVVVLVNRVHLVT  61
            Q   I  AL GK+I+    TG+GKT  AAY+        +++     K ++L     L  
Sbjct  223  QASTIPIALLGKDIVASAQTGSGKT--AAYLIPIIERLLYVKNSTSTKAIILTPTRELAI  280

Query  62   QHGEEFRRMLDGRWTV--TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
            Q  +  R++      +      G +  +     L    D++I T   L   + +      
Sbjct  281  QVHDVGRKLGQFVSNLNFGMAVGGLSLKQQEQQLKTRPDIVIATPGRLIDHIRNSPS---  337

Query  120  VELTVFSLIVVDECHH  135
              +    ++++DE   
Sbjct  338  FSVEDVQVLIIDEADR  353


>sp|Q2UQW3|ROK1_ASPOR ATP-dependent RNA helicase rok1 OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=rok1 
PE=3 SV=1
Length=725

 Score = 93.3 bits (230),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 48/253 (19%), Positives = 92/253 (36%), Gaps = 18/253 (7%)

Query  232  LLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDAL  291
            L+  L       +    L R       +  +  L     L   +      L       +L
Sbjct  357  LVNALSANKTKPMATLPLVRNIVLDEADVLLDPLFREQTLDIWRACTHPEL-----RASL  411

Query  292  LIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH-LATHGPENPK  350
                   +++ LA       ++  + T+     R ++ L D     + H L     E  K
Sbjct  412  WSATMGSSIEDLAKSTIKERKDASSLTKSYPLYRLVVGLKDSAIPNIQHKLVYAATEQGK  471

Query  351  LEMLEKILQRQFSSSNSPRG----IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA  406
            L  L ++L    ++++  R     +IFT+T   A +L   L+        DI  +    +
Sbjct  472  LLGLRQLLHPAAAAASDIRLRPPFLIFTQTIPRAVALHSELR-------YDIPPEAGGSS  524

Query  407  GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV  466
              +   + ++   + E+++ F+ G + +LV T +   G+D    N VV Y +  +    V
Sbjct  525  RIAVLHSDLSDGQRSEIMKNFRKGEIWILVTTDLLARGIDFRGINGVVNYDIPNSAAVYV  584

Query  467  QARGR-ARADQSV  478
               GR  RA +  
Sbjct  585  HRVGRTGRAGREG  597


 Score = 46.3 bits (108),  Expect = 8e-04, Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 49/152 (32%), Gaps = 38/152 (25%)

Query  20   IIIWLPTGAGKTR------AAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGEEFRRMLD  72
            +++  PTG+GKT           V   H +  +     VV+     L +Q   E R+++ 
Sbjct  232  LLVVAPTGSGKTLSFLIPVINKIVRHHHGQQEERGIFAVVVAPTKELASQIVNEGRKLVS  291

Query  73   GRWTVTTLSGD-------------------------------MGPRAGFGHLARCHDLLI  101
            G     TL                                     ++         D+L+
Sbjct  292  GTGVKITLMKKGMQVVEREDDDEDVLDEGSSESSESEDDEKTTEKKSKGKAPVTKSDILV  351

Query  102  CTAELLQMALTSPEEEEHVELTVFSLIVVDEC  133
             T   L  AL++ + +    L +   IV+DE 
Sbjct  352  TTPLQLVNALSANKTKPMATLPLVRNIVLDEA  383


>sp|O74393|MAK5_SCHPO ATP-dependent RNA helicase mak5 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=mak5 
PE=1 SV=1
Length=648

 Score = 93.3 bits (230),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 51/136 (38%), Gaps = 20/136 (15%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K   L  ++ R        + ++F    +    +  +L + +                  
Sbjct  377  KDLYLYYLIMRY-----PGKTMVFANGIEDIKRITPFLNELKVPSYP-------------  418

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 + Q+ + + ++KF++    +LV T VA  G+DIP    V+ Y +       V   
Sbjct  419  -LHAQLDQKKRLQSLEKFKNNPKGVLVCTDVAARGIDIPSVTHVIHYHVPHTADMYVHRS  477

Query  470  GR-ARADQSVYAFVAT  484
            GR ARA++   + +  
Sbjct  478  GRTARANEDGVSILMC  493


 Score = 57.9 bits (138),  Expect = 2e-07, Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 45/120 (38%), Gaps = 6/120 (5%)

Query  20   IIIWLPTGAGKTRA-AAYVAKRHLETVDGA--KVVVLVNRVHLVTQHGEEFRRMLDGRW-  75
            II    TG+GKT A    + +  L  VD    + +V+     L  Q  + F  +      
Sbjct  162  IIGKADTGSGKTLAFGIPILEHCLRNVDAKYVQALVVAPTRELAHQICQHFELIKPSPNI  221

Query  76   TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH  135
             V +++G +  +     L +   +++ T   L   +       + +      +V+DE   
Sbjct  222  RVMSITGGLAVQKQQRLLNKHPHVVVATPGRLWSVINENNLTGNFK--KIKCLVLDEADR  279


>sp|A6R9U4|MAK5_AJECN ATP-dependent RNA helicase MAK5 OS=Ajellomyces 
capsulatus (strain NAm1 / WU24) OX=2059318 GN=MAK5 PE=3 
SV=1
Length=772

 Score = 93.3 bits (230),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 55/146 (38%), Gaps = 22/146 (15%)

Query  343  THGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL  402
               P   K   L  ++          R ++FT +  +   L  +LQ              
Sbjct  470  VECPAMEKDLYLYTLMLYH----PQHRTLVFTNSISAVRRLTAFLQNLNLPAL-------  518

Query  403  LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN---LLVATSVAEEGLDIPHCNVVVRYGLL  459
                   +  + M Q+ +   +++F   T +   +LVAT VA  GLDI   ++++ Y + 
Sbjct  519  -------ALHSSMAQKARLRSVERFSSPTADPSSILVATDVAARGLDIKGIDLIIHYHVP  571

Query  460  TNEISMVQARGR-ARADQSVYAFVAT  484
                + V   GR ARA  S  + +  
Sbjct  572  RTADTYVHRSGRTARASASGKSILLC  597


 Score = 43.2 bits (100),  Expect = 0.009, Method: Composition-based stats.
 Identities = 19/130 (15%), Positives = 37/130 (28%), Gaps = 23/130 (18%)

Query  26   TGAGKTRAAAYVAKRHLETVDGAK---------------VVVLVNRVHLVTQ---HGEEF  67
            TG+GKT A       +       +                ++L     L  Q   H    
Sbjct  233  TGSGKTLAFGIPILEYYLKNRREEPVQHNDAELSSKYPIALILSPTRELAHQLSKHITAL  292

Query  68   RRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVE-LTVF  125
                      +  L+G +  +     +    D++I T   L   +++      +      
Sbjct  293  CTNAPNINARIALLTGGLSVQKQ-QRVLANADIVIGTPGRLWDVISTG--HGLLRKFQNI  349

Query  126  SLIVVDECHH  135
              +V+DE   
Sbjct  350  KFLVIDEADR  359


>sp|Q27268|DX39B_DROME ATP-dependent RNA helicase WM6 OS=Drosophila 
melanogaster OX=7227 GN=Hel25E PE=1 SV=1
Length=424

 Score = 91.8 bits (226),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 39/199 (20%), Positives = 75/199 (38%), Gaps = 29/199 (15%)

Query  310  YHREHVTKTQILCAERRLLALFDDRKNELAHLATHG--------PENPKLEMLEKILQRQ  361
                 ++K      ++ +    +   ++ A L  HG         EN K + L ++L   
Sbjct  223  MFSATLSKDIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVNLKENEKNKKLFELLDVL  282

Query  362  FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ  421
                   + +IF ++ Q   +L   L +Q        R               MTQ ++ 
Sbjct  283  ----EFNQVVIFVKSVQRCVALSQLLTEQNFPAIGIHR--------------GMTQEERL  324

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQS---V  478
               Q+F+D    +LVAT++   G+DI   N+V  Y +  +  + +    RA    +    
Sbjct  325  NRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLA  384

Query  479  YAFVATEGSRELKRELINE  497
              FV+ E   ++  E+ + 
Sbjct  385  ITFVSDENDAKILNEVQDR  403


 Score = 44.0 bits (102),  Expect = 0.004, Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 49/133 (37%), Gaps = 11/133 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG--AKVVVLVNRVHLVTQ--  62
            Q E I  A+ G +I+    +G GKT        + LE  D     V+V+ +   L  Q  
Sbjct  68   QHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSDNNTCHVLVMCHTRELAFQIS  127

Query  63   -HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCH-DLLICTAELLQMALTSPEEEEHV  120
               E F + +     V    G M  +     L      +++ T   +  AL   ++    
Sbjct  128  KEYERFSKYMP-TVKVAVFFGGMAIQKDEETLKSGTPHIVVGTPGRIL-ALIRNKKLNLK  185

Query  121  ELTVFSLIVVDEC  133
             L  F L   DEC
Sbjct  186  LLKHFVL---DEC  195


>sp|Q6FQQ6|IF4A_CANGA ATP-dependent RNA helicase eIF4A OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=TIF1 PE=3 SV=1
Length=396

 Score = 91.4 bits (225),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 22/116 (19%), Positives = 51/116 (44%), Gaps = 14/116 (12%)

Query  352  EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ  411
            +     L   + S +  + +IF  TR+    L   L                     SS 
Sbjct  246  QFKYDCLTDLYDSISVTQAVIFCNTRRKVEELTQRLTADN--------------FTVSSI  291

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
             + + Q+++  ++++F+ G+  +L++T +   G+D+   ++V+ Y L TN+ + + 
Sbjct  292  YSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPTNKENYIH  347


 Score = 47.1 bits (110),  Expect = 3e-04, Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 43/130 (33%), Gaps = 9/130 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT---RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQH  63
            Q   IMP +EG +++    +G GKT     AA   +R    +   + ++L     L  Q 
Sbjct  50   QQRAIMPIIEGNDVLAQAQSGTGKTGTFSIAAL--QRIDPAIKAPQALMLAPTRELALQI  107

Query  64   GEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELT  123
             +    +                        R   +++ T   +   +   +     ++ 
Sbjct  108  QKVVMALGFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRK----FKVD  163

Query  124  VFSLIVVDEC  133
               + ++DE 
Sbjct  164  NIKMFILDEA  173


>sp|Q5BCI0|MAK5_EMENI ATP-dependent RNA helicase mak5 OS=Emericella 
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 
194 / M139) OX=227321 GN=mak5 PE=3 SV=1
Length=770

 Score = 93.3 bits (230),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 30/121 (25%), Positives = 48/121 (40%), Gaps = 18/121 (15%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            R ++FT +  +   +   LQ  Q                  +  + M Q+ +   +++F 
Sbjct  501  RTLVFTNSISAVRRITQLLQTLQLPAL--------------ALHSSMAQKARLRSVERFS  546

Query  429  DGTLN---LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVAT  484
              T N   +LVAT VA  GLDI   + V+ Y       + V   GR ARA  S  + +  
Sbjct  547  SSTANPGTILVATDVAARGLDIKGIDFVIHYHAPRTADTYVHRSGRTARAGASGKSVIIC  606

Query  485  E  485
             
Sbjct  607  S  607


 Score = 50.2 bits (118),  Expect = 5e-05, Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 45/138 (33%), Gaps = 19/138 (14%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVV-------------VLVNRVHLVT  61
            L+G ++I    TG+GKT A       H    +  K +             +L     L  
Sbjct  232  LDGHDVIGKASTGSGKTLAFGLPILEHYLERERRKTIDSEEEKEKIPIALILSPTRELAH  291

Query  62   Q-HGEEFRRMLDGR---WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE  117
            Q     +  + +          L+G +  +     L    D++I T   +   L + +  
Sbjct  292  QLQKHIYGLISNAPGVNARTALLTGGLSVQKQ-QRLLETADIVIGTPGRVWEVLRTGQGL  350

Query  118  EHVELTVFSLIVVDECHH  135
                +     +V+DE   
Sbjct  351  -IRRMQGIKFLVIDEADR  367


>sp|Q6H874|RH47A_ORYSJ DEAD-box ATP-dependent RNA helicase 47A 
OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0636300 PE=2 
SV=1
Length=573

 Score = 92.6 bits (228),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 51/358 (14%), Positives = 110/358 (31%), Gaps = 21/358 (6%)

Query  143  NVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQN  202
             VI++   EL +Q  + + ++LG    P      +      +  +    L     +    
Sbjct  213  AVIVAPSRELGMQIVREVEKILG----PNDKRLVQQLVGGANRSRQEEALKKNKPIIVVG  268

Query  203  CCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQV  262
               ++ E S       + C     D    LL    +   D   + E   +         +
Sbjct  269  TPGRISEISAAGKLHTHSCRFLVLDEVDQLLS--FNYREDMHRILEHVGRKSGTSSRDIL  326

Query  263  VKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILC  322
              L+  +    +         + R   +      +    ++  L+       V       
Sbjct  327  GPLARRSERQTILVSATIPFSVIRAARSWGHDPVLVRAMSVVPLESITVPRPVLSQPDAN  386

Query  323  AERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHS  382
            +     ++     + L     H     K +     L+R   +  +   I F         
Sbjct  387  SNSPSNSVNQAAVDSLPPSLEHYYCTSKAQHKVDTLRRCIHALEAQTVIAF---------  437

Query  383  LLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAE  442
                +   + L+ V  + +   G   +     + +  +  V++KF+DG   +LV   ++ 
Sbjct  438  ----MNNTKPLKDVVFKLEAR-GMKATELHGDLGKLARSTVLKKFKDGEFRVLVTNELSA  492

Query  443  EGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEAL  499
             GLD+P C++V+   L T+        GR  R  +        E +       + + L
Sbjct  493  RGLDVPECDLVINLDLPTDSTHYAHRAGRTGRLGRKGTVVTICEETETFVVRKMRKQL  550


 Score = 43.2 bits (100),  Expect = 0.008, Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 51/156 (33%), Gaps = 21/156 (13%)

Query  26   TGAGKTRAAAYVAKRHL------------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDG  73
            TG+GKT A        +            +   G + V++     L  Q   E  ++L  
Sbjct  177  TGSGKTLAYLLPILSEIGPLKRPTEQDSSDKRSGVEAVIVAPSRELGMQIVREVEKILGP  236

Query  74   --RWTVTTLSGDMGPRAGFGHLARCHDLLIC-TAELLQMALTSPEEEEHVELTVFSLIVV  130
              +  V  L G          L +   +++  T   +     + +   H        +V+
Sbjct  237  NDKRLVQQLVGGANRSRQEEALKKNKPIIVVGTPGRISEISAAGKLHTHSCR----FLVL  292

Query  131  DECHHTHKDTVYNVIMSQYLELKLQRAQPLPQ-VLG  165
            DE         Y   M + LE   +++    + +LG
Sbjct  293  DEVDQLLS-FNYREDMHRILEHVGRKSGTSSRDILG  327


>sp|P34668|YO12_CAEEL Putative ATP-dependent RNA helicase ZK686.2 
OS=Caenorhabditis elegans OX=6239 GN=ZK686.2 PE=3 SV=2
Length=593

 Score = 92.9 bits (229),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 61/345 (18%), Positives = 113/345 (33%), Gaps = 35/345 (10%)

Query  222  HRRSQDPFGDLLKKLMDQIHD-HLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVY  280
            H  S+ P    L KL   I D    M +L R+    + E     +   A L  +  QR  
Sbjct  254  HLTSKIPPPIDLSKLRFLIVDEADRMGKLMREEWLDLVEFLCGGMERVACLKDIIRQR--  311

Query  281  ALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH  340
                R     +L     + V+ L     F  R        +      +   D     LA 
Sbjct  312  ----RAPQKIVLSATLSKDVEELHLWNLFKPRLFSATAVSVKDITSGIPQVDHVSGRLAL  367

Query  341  LATHGPE----NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTV  396
             ++        +PK   L   + +Q + +   R +IF     S++ L   L++   L   
Sbjct  368  PSSISHRLVVTDPKFHPLA--VYQQITRNKFNRTLIFVNEVSSSNRLAHVLKE---LCKD  422

Query  397  DIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY  456
                                 + + ++++KF      +L+ + V   G D+   + V+ Y
Sbjct  423  QFEVDYFTAQLFG--------KRRYKMLEKFNKNENRVLICSDVLARGTDLNKVDCVINY  474

Query  457  GLLTNEISMVQARGR-ARADQSVYAFVATEGSREL-------KRELINEALETLMEQAVA  508
             L  ++   V   GR  RA Q  Y     +   +           L  + +E  ME+ + 
Sbjct  475  NLPADDKLFVHRAGRTGRAGQDGYVISVGDKESKRLFVKMLKVTNLWGDTVEEQMEEYIF  534

Query  509  AVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQ  553
                 D   Y   +  L+    ++     +++  +R  F  +   
Sbjct  535  E---KDMDRYSKALESLKATVSSQAKTGGSRQIAKRSGFEAKRKS  576


 Score = 60.6 bits (145),  Expect = 3e-08, Method: Composition-based stats.
 Identities = 35/129 (27%), Positives = 55/129 (43%), Gaps = 6/129 (5%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA--KVVVLVNRVHLVTQHGEEFRRMLD  72
            L  +++ I  PTG+GKT          + +      + V+LV    LV Q  +EF+R  D
Sbjct  154  LRPRDVAIAAPTGSGKTICYVLPVLAAVGSKPSKILQAVILVPVQTLVAQIVDEFKRWND  213

Query  73   --GRWTVTTLSGDMGPRAGFGHLARC-HDLLICTAELLQMALTSPEEEEHVELTVFSLIV  129
              G   V +LSG          LA    ++++ T   L   LTS      ++L+    ++
Sbjct  214  ESGVAKVVSLSGANDFEKEARQLASDPPNVIVATPARLVQHLTSKIPPP-IDLSKLRFLI  272

Query  130  VDECHHTHK  138
            VDE     K
Sbjct  273  VDEADRMGK  281


>sp|Q66HG7|DDX59_RAT Probable ATP-dependent RNA helicase DDX59 
OS=Rattus norvegicus OX=10116 GN=Ddx59 PE=2 SV=1
Length=589

 Score = 92.6 bits (228),  Expect = 3e-18, Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 74/180 (41%), Gaps = 20/180 (11%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K + L +IL  Q      P  ++F   +  A  L   +Q+             + G  ++
Sbjct  399  KKKKLFEILNDQ--KLFKPPVLVFVDCKLGADLLSEAVQK-------------ITGLSST  443

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
            S  +  +Q +++E+++   +G   ++V+T +   GLD+ +  +VV + + ++    V   
Sbjct  444  SIHSEKSQVERREILKGLLEGDYEVVVSTGILGRGLDLVNVKLVVNFDMPSSLDEYVHQV  503

Query  470  GR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQ  527
            GR  R  Q+  A       S+ L  ++      T    ++   Q ++      + R  QQ
Sbjct  504  GRVGRLGQNGTAITFINNNSKRLFWDVAKRVKPT---GSILPPQLLNSPYLHEQKRKEQQ  560


 Score = 46.7 bits (109),  Expect = 6e-04, Method: Composition-based stats.
 Identities = 22/82 (27%), Positives = 36/82 (44%), Gaps = 8/82 (10%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK---VVVLVNRVHLVTQ-  62
            Q ++I   L G++I+    TG+GKT  AA++    +  +   K    ++L     L  Q 
Sbjct  230  QMQMIPVGLLGRDILASADTGSGKT--AAFLLPVIIRALPEDKTPSALILTPTRELAIQI  287

Query  63   --HGEEFRRMLDGRWTVTTLSG  82
                +E  R L    TV  + G
Sbjct  288  ERQAKELMRGLPRMKTVLLVGG  309


>sp|Q2FY15|CSHB_STAA8 DEAD-box ATP-dependent RNA helicase CshB 
OS=Staphylococcus aureus (strain NCTC 8325 / PS 47) OX=93061 
GN=cshB PE=3 SV=1
Length=448

 Score = 91.8 bits (226),  Expect = 3e-18, Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 74/215 (34%), Gaps = 24/215 (11%)

Query  334  RKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGL  393
             K  +           K+E    ++       N    IIF  +R +A+ L   L +    
Sbjct  214  NKKNIEFYLIPTKGAAKVEKTLNLIDIL----NPYLCIIFCNSRDNANDLARSLNE----  265

Query  394  QTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV  453
                I+  ++ G         +T R++++ +++ ++     ++A+ +A  G+DI   + V
Sbjct  266  --AGIKVGMIHG--------GLTPRERKQQMKRIRNLEFQYVIASDLASRGIDIEGVSHV  315

Query  454  VRYGLLTNEISMVQARGRARADQ-SVYAFVATEGSRELKRELINEALETLMEQAVAAVQK  512
            + + +  +        GR         A        E    LI +            V  
Sbjct  316  INFDVPNDIDFFTHRVGRTGRGNYKGVAITLYSPDEEHNISLIED-----RGFVFNTVDI  370

Query  513  MDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQF  547
             D    + K  + +QA + K      Q +N+ +  
Sbjct  371  KDGELKEVKAHNQRQARMRKDDHLTNQVKNKVRSK  405


 Score = 50.6 bits (119),  Expect = 3e-05, Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 43/131 (33%), Gaps = 9/131 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA--KVVVLVNRVHLVTQHG  64
            Q  +I   L+  N+I    TG GK+  A  +    L   +    + +V+     L  Q  
Sbjct  31   QNRIIPRILKRTNLIGQSQTGTGKSH-AFLLPLMQLIDSEIKEPQAIVVAPTRELAQQLY  89

Query  65   EEFR--RMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
            +            +V    G                L+I T       +    +  H+ +
Sbjct  90   DAANHLSQFKAGVSVKVFIGGTDIEKDRQRCNAQPQLIIGTP----TRINDLAKTGHLHV  145

Query  123  TVFSLIVVDEC  133
             + S +V+DE 
Sbjct  146  HLASYLVIDEA  156


>sp|A1CNK1|ROK1_ASPCL ATP-dependent RNA helicase rok1 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=rok1 PE=3 SV=1
Length=738

 Score = 92.9 bits (229),  Expect = 3e-18, Method: Composition-based stats.
 Identities = 59/334 (18%), Positives = 115/334 (34%), Gaps = 34/334 (10%)

Query  232  LLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDAL  291
            L+  L       +    L R       +  +  L     L   +      L       +L
Sbjct  370  LVNALSTNQTKPMATLPLVRNIVLDEADVLLDPLFRDQTLNIWRACTHPEL-----RASL  424

Query  292  LIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH-LATHGPENPK  350
                    V+ LA       +E V +T+     R ++ L D     + H L     E  K
Sbjct  425  WSATMGSNVEDLAKSTIKERKEAVNQTKSYPLLRLVVGLKDSAIPNIEHKLIYAATEQGK  484

Query  351  LEMLEKILQRQFSSSNSPRG----IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA  406
            L  L ++L    +S++  R     +IFT+T   A +L   L+     +           +
Sbjct  485  LLGLRQLLHPTAASASDVRLRPPFLIFTQTIPRAVALHSELRYDIPTEAGG-------SS  537

Query  407  GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV  466
              +   + ++   + E+++ F+ G + +LV T +   G+D    N VV Y +  +    V
Sbjct  538  RIAVLHSDLSDGQRSEIMKNFRKGEIWILVTTDLLARGVDFRGINGVVNYDIPNSAAVYV  597

Query  467  QARGR----ARADQSVYAFVATEG-------------SRELKRELINEALETLMEQAVAA  509
               GR     R       +   E              S +L+ +   ++++  +  A+  
Sbjct  598  HRVGRTGRAGREGGIAVTYYTKEDIPYVKSIANIIDVSEKLRGKTGEKSIQKWLLDALPD  657

Query  510  VQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQ  543
            + K D+ E +      +Q+ L         R+ +
Sbjct  658  LSKKDKKELKKHGVKARQSNLKSDKDDKEHRKTR  691


 Score = 42.9 bits (99),  Expect = 0.012, Method: Composition-based stats.
 Identities = 25/157 (16%), Positives = 50/157 (32%), Gaps = 43/157 (27%)

Query  20   IIIWLPTGAGKTR------AAAYVAKRHLETVDGAKVVV---LVNRVHLVTQHGEEFRRM  70
            +++  PTG+GKT           V   H ++ +  + +    +     L +Q   E R++
Sbjct  240  LLVVAPTGSGKTLSFLIPVINKIVRHHHDQSQEQERGIFSIIVAPTKELASQIVNEGRKL  299

Query  71   LDGRWTVTTLSGD----------------------------------MGPRAGFGHLARC  96
            + G      L                                     +  ++        
Sbjct  300  VHGTGVKIALMKKGMRVVEREDEDDDGDDSSSEDGDESSESEHEERPIAKKSKGKAPVTK  359

Query  97   HDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC  133
             D+L+ T   L  AL++ + +    L +   IV+DE 
Sbjct  360  SDILVTTPLQLVNALSTNQTKPMATLPLVRNIVLDEA  396


>sp|Q9FNM7|RH26_ARATH DEAD-box ATP-dependent RNA helicase 26 OS=Arabidopsis 
thaliana OX=3702 GN=RH26 PE=1 SV=2
Length=850

 Score = 92.9 bits (229),  Expect = 3e-18, Method: Composition-based stats.
 Identities = 49/327 (15%), Positives = 106/327 (32%), Gaps = 37/327 (11%)

Query  151  ELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEH  210
                 R    P ++ L   P    AS+     N +L+   ++    ++       + +  
Sbjct  447  SPPASRDSRQPPIIVLVVCPTRELASQAAAEANTLLKYHPSIGVQVVIGGTKLPTEQRRM  506

Query  211  SQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAA  270
               PC+       R +D   +            +++  L       + +    +  E   
Sbjct  507  QTNPCQILVATPGRLKDHIENTSG--FATRLMGVKVLVLDE--ADHLLDMGFRRDIERII  562

Query  271  LAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLAL  330
             A  ++++ +         +  + + VR +  +A  +D      V +      ++     
Sbjct  563  AAVPKQRQTFLF-------SATVPEEVRQICHVALKRDHEFINCVQEGSGETHQKVTQMY  615

Query  331  FDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQ  390
                   +A L  H        +L  +L+   + +   + IIF  T      L+  L  Q
Sbjct  616  M------IASLDRH------FSLLHVLLKEHIADNVDYKVIIFC-TTAMVTRLVADLLSQ  662

Query  391  QGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHC  450
              L   +I              +   Q  +  V  +F+     +LV + V+  G+D P  
Sbjct  663  LSLNVREIH-------------SRKPQSYRTRVSDEFRKSKAIILVTSDVSARGVDYPDV  709

Query  451  NVVVRYGLLTNEISMVQARGRARADQS  477
            ++VV+ GL ++    +   GR      
Sbjct  710  SLVVQMGLPSDREQYIHRLGRTGRKGK  736


 Score = 56.3 bits (134),  Expect = 8e-07, Method: Composition-based stats.
 Identities = 25/134 (19%), Positives = 51/134 (38%), Gaps = 15/134 (11%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYV--AKRHLETVDGAK--------VVVLVNRVHLVTQHG  64
            L+GK+++    TG GKT  A  +   +  +++   ++        V+V+     L +Q  
Sbjct  417  LQGKDVLAKAKTGTGKT-VAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQAA  475

Query  65   EEFRRMLDGRWTVT---TLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVE  121
             E   +L    ++     + G   P            +L+ T   L+  + +        
Sbjct  476  AEANTLLKYHPSIGVQVVIGGTKLPTEQRRMQTNPCQILVATPGRLKDHIENTSGFA-TR  534

Query  122  LTVFSLIVVDECHH  135
            L    ++V+DE  H
Sbjct  535  LMGVKVLVLDEADH  548


>sp|A1D1E3|ROK1_NEOFI ATP-dependent RNA helicase rok1 OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / 
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=rok1 
PE=3 SV=1
Length=738

 Score = 92.9 bits (229),  Expect = 3e-18, Method: Composition-based stats.
 Identities = 50/253 (20%), Positives = 92/253 (36%), Gaps = 18/253 (7%)

Query  232  LLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDAL  291
            L+  L       +    L R       +  + +L     L   +      L       +L
Sbjct  371  LVNALSANRTKPMATLPLVRNIVLDEADVLLDELFRDQTLDIWRACTHPEL-----RASL  425

Query  292  LIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH-LATHGPENPK  350
                    ++ LA       ++   +T      R ++ L D     + H L     E  K
Sbjct  426  WSATMGSNIEDLAKSTIKERKQAYDRTNSYPLLRLVVGLKDSAIPNIEHKLVYAATEQGK  485

Query  351  LEMLEKILQRQFSSSNSPRG----IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA  406
            L  L ++L    +S++  R     +IFT+T   A +L   L+        DI A+    +
Sbjct  486  LLGLRQLLHPAAASASDVRLRPPFLIFTQTIPRAIALHSELR-------YDIPAEAGGSS  538

Query  407  GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV  466
              +   + ++   + E+++ F+ G + +LV T +   G+D    N VV Y +  +    V
Sbjct  539  RIAVLHSDLSDGQRSEIMKNFRKGEIWILVTTDLLARGVDFRGINGVVNYDIPNSAAVYV  598

Query  467  QARGR-ARADQSV  478
               GR  RA +  
Sbjct  599  HRVGRTGRAGREG  611


 Score = 47.5 bits (111),  Expect = 4e-04, Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 47/153 (31%), Gaps = 39/153 (25%)

Query  20   IIIWLPTGAGKTR-----AAAYVAKRHLETVDGAKV--VVLVNRVHLVTQHGEEFRR--M  70
            +++  PTG+GKT          + + H E  +   +  VV+     L +Q   E R+   
Sbjct  245  LLVVAPTGSGKTLSFLIPVINKIVRHHHEQEEERGIFSVVVAPTKELASQIVNEGRKLVH  304

Query  71   LDGRWTVTTLSG------------------------------DMGPRAGFGHLARCHDLL  100
              G        G                                  +          D+L
Sbjct  305  GTGVKITLMKKGMRVVDREDDDDENSHSEDSEEGSESEQDEPSTTRKKKGKAPVTKSDIL  364

Query  101  ICTAELLQMALTSPEEEEHVELTVFSLIVVDEC  133
            + T  LL  AL++   +    L +   IV+DE 
Sbjct  365  VTTPLLLVNALSANRTKPMATLPLVRNIVLDEA  397


>sp|Q6CIR0|DBP10_KLULA ATP-dependent RNA helicase DBP10 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / 
NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=DBP10 PE=3 SV=1
Length=973

 Score = 92.9 bits (229),  Expect = 3e-18, Method: Composition-based stats.
 Identities = 40/186 (22%), Positives = 71/186 (38%), Gaps = 21/186 (11%)

Query  363  SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE  422
               +    I+F  TR     +   L+              L+     +    + Q  +++
Sbjct  414  EMPSEKATIVFVPTRHHVEYVTQLLKN----------CGYLVSYIYGA----LNQHARKQ  459

Query  423  VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF  481
             +  F+ G  ++LV T VA  G+DIP    V+ Y L  +    +   GR ARA    +AF
Sbjct  460  QLYNFRAGLTSILVVTDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAF  519

Query  482  VATEGSR-----ELKRELINEALETLM-EQAVAAVQKMDQAEYQAKIRDLQQAALTKRAA  535
                 +      +L+  L  + L T M E +   ++K  ++E      D + +  T+   
Sbjct  520  SIVSENELPYLLDLELFLGKKILLTPMYESSCQILRKKAESEGNNNFTDPKVSYTTRMVL  579

Query  536  QAAQRE  541
             A  R 
Sbjct  580  GACPRS  585


 Score = 55.6 bits (132),  Expect = 1e-06, Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 46/125 (37%), Gaps = 8/125 (6%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA---KVVVLVNRVHLVTQHGEEFRRML  71
            L+ ++I+    TG+GKT A        L+T       + V+L     L  Q    F+   
Sbjct  161  LQKRDIVGMARTGSGKTAAFVLPMIEKLKTHSAKIGVRAVILSPSRELAIQTHRVFKEFS  220

Query  72   DGRW-TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV  130
             G       L+G       FG +    D++I T           + E +++L     +V 
Sbjct  221  KGSDLRSILLTGGDSLEDQFGMMMGNPDVVIATPGRFLH----LKVEMNLDLKSVEYVVF  276

Query  131  DECHH  135
            DE   
Sbjct  277  DEADR  281


>sp|Q38F76|IF4A_TRYB2 Probable eukaryotic initiation factor 4A 
OS=Trypanosoma brucei brucei (strain 927/4 GUTat10.1) OX=185431 
GN=Tb09.160.3270 PE=3 SV=1
Length=404

 Score = 91.0 bits (224),  Expect = 4e-18, Method: Composition-based stats.
 Identities = 30/153 (20%), Positives = 64/153 (42%), Gaps = 18/153 (12%)

Query  315  VTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFT  374
            +TK  +    R L+         +        E  KL+ L  +    + + +  + +IF 
Sbjct  220  LTKKFMRDPTRILVKRESLTLEGIKQFFIAVEEEHKLDTLMDL----YETVSIAQSVIFA  275

Query  375  RTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNL  434
             TR+    L   L                     S   + M+++++++V+  F++G+  +
Sbjct  276  NTRRKVDWLASQLNSSN--------------HTVSCMHSEMSKQEREKVMGTFRNGSSRV  321

Query  435  LVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
            LV T +   G+D+ H N+V+ + L TN+ + + 
Sbjct  322  LVTTDLVARGIDVHHVNIVINFDLPTNKENYLH  354


 Score = 44.8 bits (104),  Expect = 0.002, Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 45/133 (34%), Gaps = 10/133 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT-RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q   I+P   G +II    +G GKT   +  + +R     +  + +VL     L  Q  E
Sbjct  53   QQRAIVPFTRGGDIIAQAQSGTGKTGAFSIGLLQRLDFRHNVLQGLVLSPTRELAMQTAE  112

Query  66   EFRRMLDG-----RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
               R+ +           T  G    +  +  L     + + T   +        +   +
Sbjct  113  VITRIGEFLAEGSSSFCATFVGGTRVQDDYRKLQSGTIVAVGTPGRVVDV----TKRGAM  168

Query  121  ELTVFSLIVVDEC  133
                  ++V+DE 
Sbjct  169  RTESLRVLVLDEA  181


>sp|Q0CI35|MAK5_ASPTN ATP-dependent RNA helicase mak5 OS=Aspergillus 
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=mak5 
PE=3 SV=2
Length=774

 Score = 92.6 bits (228),  Expect = 4e-18, Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 49/120 (41%), Gaps = 18/120 (15%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            R ++FT +  +   L  +LQ  Q                  +  + M Q+ +   +++F 
Sbjct  505  RTLVFTNSISAVRRLTQFLQALQLPAL--------------ALHSSMAQKARLRSVERFS  550

Query  429  DGTLN---LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVAT  484
              T +   +LVAT VA  GLDI   + V+ Y       + V   GR ARA  S  + +  
Sbjct  551  SPTADPSTILVATDVAARGLDIKGIDFVIHYHAPRTADTYVHRSGRTARAGASGKSVIIC  610


 Score = 46.7 bits (109),  Expect = 7e-04, Method: Composition-based stats.
 Identities = 30/146 (21%), Positives = 51/146 (35%), Gaps = 19/146 (13%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHL--------ETVDGAK-----VVVL  53
            Q   I P L+G +++    TG+GKT A       +         +  D  K      ++L
Sbjct  229  QKSCIPPILDGHDVVGKASTGSGKTLAFGIPILEYYLEKKRRETKNKDDKKETSPIALIL  288

Query  54   VNRVHLVTQ---HGEEFRRMLDGRW-TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQM  109
                 L  Q   H  E      G    +  L+G +  +     L    D++I T   +  
Sbjct  289  SPTRELAHQLVKHIGEVITHAPGVNARIALLTGGLSVQKQ-QRLLNGADIVIGTPGRVWE  347

Query  110  ALTSPEEEEHVELTVFSLIVVDECHH  135
             L+  +     ++     +VVDE   
Sbjct  348  VLSGGQGL-ISKMKEIKYLVVDEADR  372


>sp|Q6BME5|SUB2_DEBHA ATP-dependent RNA helicase SUB2 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / 
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=SUB2 PE=3 SV=2
Length=435

 Score = 91.4 bits (225),  Expect = 4e-18, Method: Composition-based stats.
 Identities = 53/345 (15%), Positives = 109/345 (32%), Gaps = 26/345 (8%)

Query  164  LGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHR  223
            LG TA        +LD     +  L            +N   +  ++      +      
Sbjct  99   LGKTAVFVLSTLQQLDPVPGEISTLVICHTRELAYQIRNEYARFSKYMPDVKTEVFY---  155

Query  224  RSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALH  283
                P    L+KL ++      +     +    + E+ +   +  + +    ++ + A+ 
Sbjct  156  -GGTPITRDLEKLKNKDTCPHIVVATPGRLHALVTEKSIRLNNIKSFVIDECDKVLEAVD  214

Query  284  LRRYNDALLIH-DTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLA  342
            +RR    +  +    + V   +A      R    K      E  +        + L    
Sbjct  215  MRRDVQDIFRNTPHQKQVMMFSATLSQEIRPVCKKFMQNPLEIYVDDEAKLTLHGLQQYY  274

Query  343  THGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL  402
                E  K   L  +L          + IIF R+ Q A+ L   L               
Sbjct  275  IKLDEKEKNRKLSDLLDSL----EFNQVIIFVRSTQRANELNKLLCSSNFPSI-------  323

Query  403  LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE  462
                   +  + + Q ++ E  + F++    + V+T V   G+DI   N+ + Y L    
Sbjct  324  -------AVHSGLPQEERIERYKSFKEFNKRICVSTDVFGRGIDIERINLAINYDLPNEA  376

Query  463  ISMVQARGRARADQS---VYAFVATEGSRELKRELINEALETLME  504
               +   GRA    +     + V+T+   E+  ++ +     + E
Sbjct  377  DQYLHRVGRAGRFGTKGLAVSLVSTKDDEEVLEKIQSRFDVKITE  421


 Score = 42.9 bits (99),  Expect = 0.009, Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 46/135 (34%), Gaps = 14/135 (10%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQ---  62
            Q   I  ++ G +++    +G GKT        + L+ V G    +V+ +   L  Q   
Sbjct  78   QQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEISTLVICHTRELAYQIRN  137

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHD----LLICTAELLQMALTSPEEEE  118
                F + +    T     G   P        +  D    +++ T   L   +T      
Sbjct  138  EYARFSKYMPDVKTEVFYGG--TPITRDLEKLKNKDTCPHIVVATPGRLHALVTEKS---  192

Query  119  HVELTVFSLIVVDEC  133
             + L      V+DEC
Sbjct  193  -IRLNNIKSFVIDEC  206


>sp|Q86IZ9|DDX52_DICDI Probable ATP-dependent RNA helicase ddx52 
OS=Dictyostelium discoideum OX=44689 GN=ddx52 PE=3 SV=1
Length=668

 Score = 92.6 bits (228),  Expect = 4e-18, Method: Composition-based stats.
 Identities = 32/146 (22%), Positives = 59/146 (40%), Gaps = 19/146 (13%)

Query  339  AHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI  398
              L   G E  KL  + +++Q+       P  +IFT++++ AH L   L           
Sbjct  416  QKLIYVGKEEGKLLAVRQLIQKGLE----PPILIFTQSKERAHDLFQEL-----------  460

Query  399  RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL  458
               +  G       +  TQ  +  +++KF+ G + +L+ T +   G+D    N V+ +  
Sbjct  461  ---IFDGINVDVIHSERTQFQRDTIVKKFRMGKIWVLICTELMARGMDFKGVNFVINFDF  517

Query  459  LTNEISMVQARGR-ARADQSVYAFVA  483
                 S +   GR  RA +   A+  
Sbjct  518  PHTLASYIHRIGRTGRAGRPGVAYTL  543


 Score = 62.9 bits (151),  Expect = 6e-09, Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 56/130 (43%), Gaps = 7/130 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGA-KVVVLVNRVHLVTQHG  64
            Q +VI   L+ + ++   PTG+GKT + +  + +   E      + V++     L  Q  
Sbjct  226  QMQVIPILLKEREVVAIAPTGSGKTASFSIPILQALYEPKKEGFRSVIIAPTRELAQQIY  285

Query  65   EEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELT  123
              FR +  G  + +  LS ++  ++   +L + +D+LI T   L   +        + L 
Sbjct  286  RNFRLLSKGKPFRICVLSKNLHNQSTNENLIKNYDILITTPLRLVYLIKENL----LSLN  341

Query  124  VFSLIVVDEC  133
                +V DE 
Sbjct  342  KVEYLVFDEA  351


>sp|Q5XH91|DDX1_XENTR ATP-dependent RNA helicase DDX1 OS=Xenopus 
tropicalis OX=8364 GN=ddx1 PE=2 SV=1
Length=740

 Score = 92.6 bits (228),  Expect = 4e-18, Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 54/141 (38%), Gaps = 10/141 (7%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K E   + ++         + IIF RT+    ++  +  QQ G           +     
Sbjct  493  KGEYTVRAIKEH----KMDQAIIFCRTKLDCDNMEQYFIQQGGGPDKKGHQFSCV-----  543

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
               +    ++++  +++F+   +  L+ T VA  G+DI     V+   L   + + V   
Sbjct  544  CLHSDRKPQERKHNLERFKKCEVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRI  603

Query  470  GR-ARADQSVYAFVATEGSRE  489
            GR  RA++   A       +E
Sbjct  604  GRVGRAERMGLAISLVAAEKE  624


>sp|A2VD92|DDX1_XENLA ATP-dependent RNA helicase DDX1 OS=Xenopus 
laevis OX=8355 GN=ddx1 PE=2 SV=1
Length=740

 Score = 92.6 bits (228),  Expect = 4e-18, Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 54/141 (38%), Gaps = 10/141 (7%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K E + + ++         + IIF RT+    ++  +  QQ G           +     
Sbjct  493  KGEYIVRAIKEH----KMDQAIIFCRTKLDCDNMEQYFIQQGGGPDKKGHQFSCV-----  543

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
               +     +++  +++F+   +  L+ T VA  G+DI     V+   L   + + V   
Sbjct  544  CLHSDRKPPERKHNLERFKKCEVRFLICTDVAARGIDIRGVPYVINVTLPDEKQNYVHRI  603

Query  470  GR-ARADQSVYAFVATEGSRE  489
            GR  RA++   A       +E
Sbjct  604  GRVGRAERMGLAISLVASEKE  624


>sp|Q3EBD3|RH41_ARATH DEAD-box ATP-dependent RNA helicase 41 OS=Arabidopsis 
thaliana OX=3702 GN=RH41 PE=2 SV=1
Length=505

 Score = 91.8 bits (226),  Expect = 4e-18, Method: Composition-based stats.
 Identities = 57/341 (17%), Positives = 115/341 (34%), Gaps = 57/341 (17%)

Query  223  RRSQDPFGDLL---KKLMDQIHDHLEMPELSRKF------GTQMYEQQVVKLSEAAALAG  273
             + ++P   +L   ++L  Q+ D  +M      F      G      Q+ ++ +   L  
Sbjct  182  DQRRNPLAMVLAPTRELCVQVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELII  241

Query  274  LQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD  333
                RV    L   +   L +     +D +  +     R+ V +       +  + LF  
Sbjct  242  GTPGRVVD--LLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQI-FQALSQPQVLLFSA  298

Query  334  R------------KNELAHLATHGPENP---------------KLEMLEKILQRQFSSSN  366
                           E+  ++   P  P               K + L  IL+ Q  +  
Sbjct  299  TISREVEKVGGSLAKEIILVSIGNPNKPNKAVNQLAIWVDAKQKKQKLFDILRSQ--NHF  356

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
             P  +++  +R  A  L   +              ++ G    S       +++++V+  
Sbjct  357  KPPAVVYVSSRVGADLLANAI-------------TVVTGVKALSIHGEKPMKERRDVMGS  403

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA-RADQSVYAF-VAT  484
            F  G + +LV+T V   G+D+     V+ + + +     +   GRA R  +   A     
Sbjct  404  FLGGEVPVLVSTGVLGRGVDLLVVRQVIVFDMPSTIKEYIHVIGRASRMGEKGTAIVFVN  463

Query  485  EGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDL  525
            E  R L  +L+  AL++        +  +   E   K R +
Sbjct  464  EDDRNLFPDLV-AALKSSGAAIPKELINLTSREMHNKKRRV  503


 Score = 57.9 bits (138),  Expect = 2e-07, Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 73/197 (37%), Gaps = 27/197 (14%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYV----------AKRHLETVDGAKVVVLVNR  56
            Q + I  AL GK+++    TG+GKT A+  V          ++   +       +VL   
Sbjct  137  QMQAIPAALTGKSLLASADTGSGKT-ASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPT  195

Query  57   VHLVTQ---HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTS  113
              L  Q     +   + L  +  +      M  +       +  +L+I T   +   L+ 
Sbjct  196  RELCVQVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQ--QGVELIIGTPGRVVDLLSK  253

Query  114  PEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTG  173
                  +EL      V+DE     +    + +M  +      +A   PQVL  +A+  + 
Sbjct  254  HT----IELDNIMTFVLDEVDCMLQRGFRDQVMQIF------QALSQPQVLLFSAT-ISR  302

Query  174  GASKLDGAINHVLQLCA  190
               K+ G++   + L +
Sbjct  303  EVEKVGGSLAKEIILVS  319


>sp|Q751D1|DBP6_EREGS ATP-dependent RNA helicase DBP6 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=DBP6 PE=3 SV=1
Length=607

 Score = 92.2 bits (227),  Expect = 4e-18, Method: Composition-based stats.
 Identities = 36/181 (20%), Positives = 77/181 (43%), Gaps = 17/181 (9%)

Query  364  SSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEV  423
            S+ S R ++F ++ +++  L   L    G     +   +      ++ ++  T R   E 
Sbjct  428  STESLRILVFVKSNEASIRLAALLTAMVGNGLSAVSTTV---GSINNNNSKATNRKLIEA  484

Query  424  IQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYA--  480
                  G  ++LV+T +   GLDI   + V+ Y L  +    V   GR ARA+ S  A  
Sbjct  485  FAAGASGHCSILVSTDLMSRGLDISGISHVINYDLPISSQQYVHRCGRTARANTSGTAVN  544

Query  481  FVATEGSRELKRELINEAL-----------ETLMEQAVAAVQKMDQAEYQAKIRDLQQAA  529
             +  +G +   ++ I+  +           +    + + ++ + D A Y+  + +L+++ 
Sbjct  545  LLVGKGEQNFWKDHIDSDISRAPDGSHLFFDEEQREQLVSLSEEDTATYKKCLEELKKSV  604

Query  530  L  530
            L
Sbjct  605  L  605


 Score = 66.4 bits (160),  Expect = 5e-10, Method: Composition-based stats.
 Identities = 32/120 (27%), Positives = 48/120 (40%), Gaps = 8/120 (7%)

Query  20   IIIWLPTGAGKTRAAAYVAKRHL--ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV  77
            I++   TG+GKT A A +    L   TV+  + V+LV    LV Q  +  + +  G   V
Sbjct  217  ILVNASTGSGKTLAYAMLLIHILSRRTVNKLRAVILVPTKLLVHQVYDTVQALAKGSSVV  276

Query  78   TTLSG-DMGPRAGFGHLA-RCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH  135
              +S  D   +     L  +  D+LI T   L   L          L     +V+DE   
Sbjct  277  VAVSKMDTSLKEESAKLKAQEPDVLIITPGRLVDHLNMQT----FSLKNLKFLVLDEADR  332


>sp|Q6BRN4|IF4A_DEBHA ATP-dependent RNA helicase eIF4A OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 
/ JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=TIF1 PE=3 SV=1
Length=397

 Score = 90.6 bits (223),  Expect = 5e-18, Method: Composition-based stats.
 Identities = 43/305 (14%), Positives = 99/305 (32%), Gaps = 30/305 (10%)

Query  165  GLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYN--LCH  222
            G TA+       ++D        L         +  QN    +  +              
Sbjct  72   GKTATFTISALQRIDENEKSTQALILAPTRELALQIQNVITHIGLYLNVTVHASIGGTSM  131

Query  223  RRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYAL  282
            +   + F   ++ ++       +M E  R F T   +  ++  ++    +G +EQ     
Sbjct  132  KDDIEAFKSGVQIVVGTPGRVFDMIE-RRFFKTDKVKMFILDEADEMLSSGFKEQIYNIF  190

Query  283  HLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLA  342
             L      +++       D L     F +       +        +  F     +  +  
Sbjct  191  RLLPETTQVVLLSATMPQDVLEVTTKFMNNPVRILVKKDELTLEGIKQFYINVEQEDY--  248

Query  343  THGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL  402
                   K + L  +    + S +  + +IF  TR     L   L+ +            
Sbjct  249  -------KFDCLCDL----YDSISVTQAVIFCNTRSKVEFLTTKLKGEN-----------  286

Query  403  LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE  462
                  S+    + Q D+  ++ +F+ G+  +L++T +   G+D+   ++V+ Y L  N+
Sbjct  287  ---FTVSAIHADLPQADRDTIMNEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANK  343

Query  463  ISMVQ  467
             + + 
Sbjct  344  ENYIH  348


 Score = 54.0 bits (128),  Expect = 2e-06, Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 43/129 (33%), Gaps = 6/129 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q   I+P  EG++++    +G GKT        +R  E     + ++L     L  Q   
Sbjct  50   QQRAILPITEGRDVLAQAQSGTGKTATFTISALQRIDENEKSTQALILAPTRELALQIQN  109

Query  66   EFRRM-LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
                + L    TV    G    +           +++ T   +   +    E    +   
Sbjct  110  VITHIGLYLNVTVHASIGGTSMKDDIEAFKSGVQIVVGTPGRVFDMI----ERRFFKTDK  165

Query  125  FSLIVVDEC  133
              + ++DE 
Sbjct  166  VKMFILDEA  174


>sp|Q4WRH5|ROK1_ASPFU ATP-dependent RNA helicase rok1 OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 
/ Af293) OX=330879 GN=rok1 PE=3 SV=1
Length=739

 Score = 92.2 bits (227),  Expect = 5e-18, Method: Composition-based stats.
 Identities = 59/334 (18%), Positives = 116/334 (35%), Gaps = 34/334 (10%)

Query  232  LLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDAL  291
            L+  L       +    L R       +  + +L     L   +      L       +L
Sbjct  372  LVNALSANRTKPMATLPLVRNIVLDEADVLLDELFREQTLDIWRACTHPEL-----RASL  426

Query  292  LIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH-LATHGPENPK  350
                    ++ LA       ++   +T+     R ++ L D     + H L     E  K
Sbjct  427  WSATMGSNIEDLAKSTIKERKQAYDQTKSYPLLRLVVGLKDSAIPNIEHKLVYAATEQGK  486

Query  351  LEMLEKILQRQFSSSNSPRG----IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA  406
            L  L ++L    +S +  R     +IFT+T   A +L   L+        DI A+    +
Sbjct  487  LLGLRQLLHPAAASVSDVRLRPPFLIFTQTIPRAIALHSELR-------YDIPAEAGGSS  539

Query  407  GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV  466
              +   + ++   + E+++ F+ G + +LV T +   G+D    N VV Y +  +    V
Sbjct  540  RIAVLHSDLSDGQRSEIMKNFRKGEIWILVTTDLLARGVDFRGINGVVNYDIPNSAAVYV  599

Query  467  QARGR----ARADQSVYAFVATEG-------------SRELKRELINEALETLMEQAVAA  509
               GR     R       +   E              S +L+ +   ++++  +  A+  
Sbjct  600  HRVGRTGRAGREGGIAVTYYTKEDIPYVKSIANIIDVSEKLRGKDGEKSIQKWLLDALPD  659

Query  510  VQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQ  543
            + K D+ E +      +Q+ L         R  +
Sbjct  660  LSKKDKKELKKHGVKARQSTLKSVKDDKEHRRTR  693


 Score = 47.5 bits (111),  Expect = 4e-04, Method: Composition-based stats.
 Identities = 27/153 (18%), Positives = 46/153 (30%), Gaps = 39/153 (25%)

Query  20   IIIWLPTGAGKTR-----AAAYVAKRHLETVDGAKV--VVLVNRVHLVTQHGEEFRR--M  70
            +++  PTG+GKT          + + H E      +  V++     L +Q   E R+   
Sbjct  246  LLVVAPTGSGKTLSFLIPVINKIVRHHHEQEKERGIFSVIVAPTKELASQIVNEGRKLVH  305

Query  71   LDGRWTVTTLSG------------------------------DMGPRAGFGHLARCHDLL  100
              G        G                                  +          D+L
Sbjct  306  GTGVKITLMKKGMRVVDREDDDDENSHSEDSEEGSDSEQDEPSTTRKKKGKAPITKSDIL  365

Query  101  ICTAELLQMALTSPEEEEHVELTVFSLIVVDEC  133
            + T  LL  AL++   +    L +   IV+DE 
Sbjct  366  VTTPLLLVNALSANRTKPMATLPLVRNIVLDEA  398


>sp|O13792|SUB2_SCHPO ATP-dependent RNA helicase uap56 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=uap56 
PE=1 SV=3
Length=434

 Score = 90.6 bits (223),  Expect = 5e-18, Method: Composition-based stats.
 Identities = 43/315 (14%), Positives = 100/315 (32%), Gaps = 24/315 (8%)

Query  182  INHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPF--GDLLKKLMDQ  239
            ++ + Q+        ++   +      +   +  +            F  G  +K+ M+ 
Sbjct  107  LSTLQQIEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEA  166

Query  240  IHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRA  299
              D  + P +      ++      K+ +  ++            L   +    I +  RA
Sbjct  167  FKDKSKSPHIVVATPGRLNALVREKILKVNSVKHFVLDE-CDKLLESVDMRRDIQEVFRA  225

Query  300  VDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPE--NPKLEML--E  355
                  +  F     ++       ++ +    +   ++   L  HG +    KLE     
Sbjct  226  TPPQKQVMMF--SATLSNEIRPICKKFMQNPLEIYVDDETKLTLHGLQQHYVKLEEKAKN  283

Query  356  KILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHM  415
            + +     S    + +IF ++   A+ L   L++                         +
Sbjct  284  RKINDLLDSLEFNQVVIFVKSVSRANELDRLLRECNFPSI--------------CIHGGL  329

Query  416  TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARA-  474
             Q ++ +  + F+D    + VAT V   G+DI   N+V+ Y +  +  S +   GRA   
Sbjct  330  PQEERIKRYKAFKDFDKRICVATDVFGRGIDIERVNIVINYDMPDSPDSYLHRVGRAGRF  389

Query  475  DQSVYAFVATEGSRE  489
                 A   +    +
Sbjct  390  GTKGLAITFSSSEED  404


 Score = 45.6 bits (106),  Expect = 0.001, Method: Composition-based stats.
 Identities = 37/188 (20%), Positives = 72/188 (38%), Gaps = 14/188 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQ---  62
            Q   I  ++ G +++    +G GKT        + +E VDG   V+VL +   L  Q   
Sbjct  78   QQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIEPVDGEVSVLVLCHTRELAFQIKN  137

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPR--AGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
                F + L    T     G    +    F   ++   +++ T   L  AL     E+ +
Sbjct  138  EYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHIVVATPGRL-NAL---VREKIL  193

Query  121  ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG  180
            ++      V+DEC    +    +V M + ++   +   P  QV+  +A+           
Sbjct  194  KVNSVKHFVLDECDKLLE----SVDMRRDIQEVFRATPPQKQVMMFSATLSNEIRPICKK  249

Query  181  AINHVLQL  188
             + + L++
Sbjct  250  FMQNPLEI  257


>sp|A5E3W5|SUB2_LODEL ATP-dependent RNA helicase SUB2 OS=Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=SUB2 PE=3 SV=1
Length=433

 Score = 90.6 bits (223),  Expect = 5e-18, Method: Composition-based stats.
 Identities = 49/333 (15%), Positives = 113/333 (34%), Gaps = 27/333 (8%)

Query  180  GAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQ  239
              +  +  +   + T  I   +    Q++    +   +Y    +      G  +K+ +++
Sbjct  106  STLQQLDPVAGEISTLVICHTRELAYQIRNEYAR-FSKYMPDVKTEVFYGGTPVKRDIEK  164

Query  240  IHDHLEMPELSRKFGTQMY---EQQVVKLSEAAALAGLQEQRVYA-LHLRRYNDALLIH-  294
            + +    P +      +++   +++ ++L+   +    +  +V   L +RR    +    
Sbjct  165  LKNKDTCPHIVVATPGRLHALVQEKAIRLNNVKSFVIDECDKVLESLDMRRDVQDIFRAT  224

Query  295  DTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEML  354
               + V   +A      R    K      E  +        + L        E  K   L
Sbjct  225  PHQKQVMMFSATLSQDIRPVCKKFMQNPLEIYVDDEAKLTLHGLQQYYIKLEEKEKNRKL  284

Query  355  EKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH  414
              +L          + IIF ++ Q A+ L   L                      +  + 
Sbjct  285  SDLLDSL----EFNQVIIFVKSTQRANELNKLLCACNFPSI--------------AVHSG  326

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARA  474
            + Q ++ E  + F++    + V+T V   G+DI   N+ + Y L       +   GRA  
Sbjct  327  LPQEERIERYKSFKEFNKRICVSTDVFGRGIDIERINLAINYDLPNEADQYLHRVGRAGR  386

Query  475  DQS---VYAFVATEGSRELKRELINEALETLME  504
              +     +FV+T+   E+  ++ +     + E
Sbjct  387  FGTKGLGISFVSTKEDEEVLEKIQSRFDVKITE  419


 Score = 40.2 bits (92),  Expect = 0.059, Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 48/135 (36%), Gaps = 14/135 (10%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQ---  62
            Q   I  ++ G +++    +G GKT        + L+ V G    +V+ +   L  Q   
Sbjct  76   QQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPVAGEISTLVICHTRELAYQIRN  135

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHD----LLICTAELLQMALTSPEEEE  118
                F + +    T     G   P        +  D    +++ T   L     +  +E+
Sbjct  136  EYARFSKYMPDVKTEVFYGG--TPVKRDIEKLKNKDTCPHIVVATPGRLH----ALVQEK  189

Query  119  HVELTVFSLIVVDEC  133
             + L      V+DEC
Sbjct  190  AIRLNNVKSFVIDEC  204


>sp|Q6P9R1|DDX51_MOUSE ATP-dependent RNA helicase DDX51 OS=Mus 
musculus OX=10090 GN=Ddx51 PE=1 SV=1
Length=639

 Score = 91.8 bits (226),  Expect = 5e-18, Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 76/175 (43%), Gaps = 17/175 (10%)

Query  368  PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF  427
             R + FT +R+++H L L  Q   G+   +  ++   G              +++++++F
Sbjct  478  SRALCFTNSRENSHRLYLLAQAFGGVSVAEFSSRYGPG-------------QRKKILKQF  524

Query  428  QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF--VAT  484
            + G + LL++T     G+D+    +V+ Y       + V   GR ARA ++  AF  +  
Sbjct  525  EQGKIQLLISTDATARGIDVQGVELVINYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLK  584

Query  485  EGSRELKRELINEALETLMEQAVA-AVQKMDQAEYQAKIRDLQQAALTKRAAQAA  538
               R+  + +    +  L    +   + +   A Y+  +  L++    ++  +AA
Sbjct  585  VQERKFLQMVSEAGVPELTHHEIPRKLLQPLVARYETALSQLEKTVKEEQKLKAA  639


 Score = 52.1 bits (123),  Expect = 1e-05, Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 74/232 (32%), Gaps = 25/232 (11%)

Query  20   IIIWLPTGAGKTRAAAY-VAKRHLETVD-GAKVVVLVNRVHLVTQHGEEFRRMLD-GRWT  76
            + +  PTG+GKT A    V +  L  V    + +V++    L  Q  + F    D     
Sbjct  224  LCVSAPTGSGKTLAFVIPVVQALLHRVVCHIRALVVLPTKELAQQVSKVFNIYTDTTPLR  283

Query  77   VTTLSGDMGPRAGFGHLARCH--------DLLICTAELLQMALTSPEEEEHVELTVFSLI  128
            V  ++G          L +          D+++ T   L   +          L     +
Sbjct  284  VALVTGQKSLAKEQESLVQKTADGFRCLADIVVATPGRLVDHIDQTPG---FSLQQLRFL  340

Query  129  VVDECHHTHKDTVY-----NVIMSQYLELKLQRAQPLPQVL---GLTASPGTGGASKLDG  180
            ++DE      D+++      V+ + +       +  L Q      LTA+        L  
Sbjct  341  IIDEADRMI-DSMHQSWLPRVVAAAFYSEGPTGSCALLQRTQPQALTAASTCVPQMPLQK  399

Query  181  AINHVLQLC--ANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFG  230
             +           L    +  P+    +L + S +   + +    +   P G
Sbjct  400  LLFSATLTQDPEKLQRLGLYQPRLFSTRLGQQSPKDTAEVDENSGKYTFPVG  451


>sp|A3LST5|SUB2_PICST ATP-dependent RNA helicase SUB2 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=SUB2 PE=3 SV=1
Length=433

 Score = 90.6 bits (223),  Expect = 5e-18, Method: Composition-based stats.
 Identities = 38/217 (18%), Positives = 77/217 (35%), Gaps = 23/217 (11%)

Query  310  YHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPE--NPKLEMLE--KILQRQFSSS  365
                 +++      ++ +    +   ++ A L  HG +    KLE  E  + L     S 
Sbjct  232  MFSATLSQEIRPVCKKFMQNPLEIYVDDEAKLTLHGLQQYYIKLEEKEKNRKLSDLLDSL  291

Query  366  NSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQ  425
               + IIF ++ Q A+ L   L                      +  + + Q ++ E  +
Sbjct  292  EFNQVIIFVKSTQRANELNKLLCSCNFPSI--------------AVHSGLPQEERIERYR  337

Query  426  KFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFVATE  485
             F++    + V+T V   G+DI   N+ + Y L       +   GRA    +    ++  
Sbjct  338  SFKEFNKRICVSTDVFGRGIDIERINLAINYDLPNEADQYLHRVGRAGRFGTKGLAISLV  397

Query  486  GSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKI  522
            GS+E +     E LE +  +    + +  +       
Sbjct  398  GSKEDE-----EVLEKIQSRFDVKITEFPEEGVDPST  429


 Score = 43.6 bits (101),  Expect = 0.005, Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 63/190 (33%), Gaps = 18/190 (9%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQ---  62
            Q   I  ++ G +++    +G GKT        + L+ V G    +V+ +   L  Q   
Sbjct  76   QQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEISTLVICHTRELAYQIRN  135

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHD----LLICTAELLQMALTSPEEEE  118
                F + +    T     G   P        +  D    +++ T   L  AL + +   
Sbjct  136  EYARFSKYMPDVKTEVFYGG--TPIKRDIEKLKSKDTCPHIVVATPGRL-HALVNEKA--  190

Query  119  HVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKL  178
             + L+     V+DEC    +       +         +     QV+  +A+         
Sbjct  191  -IRLSNVKSFVIDECDKVLESIDMRRDVQDIFRATPHQK----QVMMFSATLSQEIRPVC  245

Query  179  DGAINHVLQL  188
               + + L++
Sbjct  246  KKFMQNPLEI  255


>sp|A5DGM4|SPB4_PICGU ATP-dependent rRNA helicase SPB4 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=SPB4 PE=3 
SV=2
Length=601

 Score = 91.8 bits (226),  Expect = 6e-18, Method: Composition-based stats.
 Identities = 37/188 (20%), Positives = 79/188 (42%), Gaps = 17/188 (9%)

Query  352  EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ  411
            E    +L    S+    + I++  T  S        Q+   L+ V++          +S 
Sbjct  252  ETKIAVLINMLSTLQYKKCIVYFPTCASVKYFYSVFQKLHPLEDVNL----------TSI  301

Query  412  STHMTQRDQQEVIQKFQDGTL----NLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
               +  + + + + KF +G +    ++L+ T VA  G+DIP  ++V++    T+    + 
Sbjct  302  HGQLLAKARLKAMNKFTEGDVRTSKHVLLTTDVAARGIDIPEVDLVIQLDPPTDPDMFLH  361

Query  468  ARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQ  526
              GR  RA++   A V    +  L+ + ++      ++ +      +  A Y+A  ++L+
Sbjct  362  RCGRTGRANKVGRAIVMLNNN-ALESDYVDFMEVKGLKMSEVESPDVIDA-YKAFSKNLR  419

Query  527  QAALTKRA  534
               L  RA
Sbjct  420  NLMLQDRA  427


 Score = 39.4 bits (90),  Expect = 0.10, Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 48/133 (36%), Gaps = 19/133 (14%)

Query  18   KNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAK------VVVLVNRVHLVTQHGEEFRRM  70
            K++++   TG+GKT A A  V +R  + +   +       +V+     L  Q    F  +
Sbjct  52   KDVVVEAVTGSGKTLAFAIPVLERVTKCMKENRGSSGLYGIVISPTRELANQINTVFHTL  111

Query  71   L------DGRWTVTTLSGDMGPRAGFGHLARCH--DLLICTAELLQMALTSPEEEEHVEL  122
            L              + G +       +    +   ++I T   L    +S      V+ 
Sbjct  112  LQFYPEDQPPIKTQLIVGSLATVREDLNAFAENKPQIIIATPGRLLDFFSSNA----VKR  167

Query  123  TVFSLIVVDECHH  135
            +   ++V+DE   
Sbjct  168  STVEMVVLDEADR  180


>sp|Q6C7D2|HAS1_YARLI ATP-dependent RNA helicase HAS1 OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=HAS1 PE=3 
SV=1
Length=605

 Score = 91.4 bits (225),  Expect = 7e-18, Method: Composition-based stats.
 Identities = 41/258 (16%), Positives = 84/258 (33%), Gaps = 42/258 (16%)

Query  253  FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHR  312
             G     Q+  KL++   L      R+   HL+     +  +     +D    + +    
Sbjct  238  IGGNNRRQEEEKLNKGVNLLVCTPGRLLD-HLQNSQGFVFKNLKALIIDEADRILEIGFE  296

Query  313  EHVTKTQILCAERRLLALFDD----RKNELAHLAT----------HGPENPKLEMLEK--  356
            + + +   +  + R   LF      +  +LA ++               +   E LE+  
Sbjct  297  QEMKEIIKILPKERQSMLFSATQTTKVEDLARISLKKGPLYLNVDEHNVSSTAEGLEQGY  356

Query  357  ----------ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA  406
                      +L      +   + I+F  +  S       L        +D+    L G 
Sbjct  357  VVCDSDKRFLLLFSFLKRNAGKKIIVFLSSCNSVKFYGELL------NYIDLPVLDLHG-  409

Query  407  GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV  466
                      Q+ +     +F +    +L+ T VA  GLDIP  + ++++    +    +
Sbjct  410  -------KQKQQKRTNTFFEFINAKQGVLICTDVAARGLDIPKVDWIIQFDPPDDPRDYI  462

Query  467  QARGR-ARADQSVYAFVA  483
               GR AR   S  + + 
Sbjct  463  HRVGRTARGSASGKSIMF  480


 Score = 57.1 bits (136),  Expect = 4e-07, Method: Composition-based stats.
 Identities = 31/135 (23%), Positives = 51/135 (38%), Gaps = 9/135 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT---RAAAYVAKRHLETVD--GAKVVVLVNRVHLVT  61
            Q + I P L G++++    TG+GKT      A    R L+     G  V+V+     L  
Sbjct  158  QEKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEMLRKLKFKPRNGTGVIVVSPTRELAL  217

Query  62   QHGEEFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
            Q     R ++        +  G    R     L +  +LL+CT   L   L + +     
Sbjct  218  QIYGVARDLMANHSQTLGIVIGGNNRRQEEEKLNKGVNLLVCTPGRLLDHLQNSQGFVFK  277

Query  121  ELTVFSLIVVDECHH  135
             L     +++DE   
Sbjct  278  NLKA---LIIDEADR  289


>sp|Q5ANB2|DBP10_CANAL ATP-dependent RNA helicase DBP10 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DBP10 
PE=3 SV=1
Length=908

 Score = 92.2 bits (227),  Expect = 7e-18, Method: Composition-based stats.
 Identities = 44/279 (16%), Positives = 90/279 (32%), Gaps = 32/279 (11%)

Query  218  YNLCHRRSQDPFGDLLKKLMDQIHDHLE-------MPELSRKFGTQMYEQQVVKLSEAAA  270
            ++   R  +  F + L +L+  +  + +       +P     F        V+   +A +
Sbjct  248  FDEADRLFEMGFAEQLNELLASLPSNRQSLLFSATLPRSLVDFAKAGLTNPVLVRLDAES  307

Query  271  LAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLAL  330
                Q Q  Y    +   +A L++     +      ++   +      + + ++      
Sbjct  308  KISDQLQMAYFTTKKNEREANLLYILQEVIKMPLGSEEQIKKLKDMDKRKIDSDSEDDDD  367

Query  331  FDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQ  390
             ++RK             P    L           +    I+F  T+     +   L+  
Sbjct  368  DEERKKGKKRYKFKKERLPPANRL----------PSPHSTIVFVPTKHHVEYVTKLLRDA  417

Query  391  QGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHC  450
                          G   S     + Q  ++  + +F+ G  N+LV T VA  G+DIP  
Sbjct  418  --------------GYLVSYIYGTLDQHARKNQLYQFRVGLTNVLVVTDVAARGIDIPVL  463

Query  451  NVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSR  488
              V+ + L  +    +   GR ARA    +A+       
Sbjct  464  ANVINFTLPASSKIFIHRVGRTARAGNKGWAYSIVNEKE  502


 Score = 51.3 bits (121),  Expect = 3e-05, Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 47/125 (38%), Gaps = 9/125 (7%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA--KVVVLVNRVHLVTQHGEEFR--RM  70
            +EG++++    TG+GKT A        L++      + V+L     L  Q  ++ +    
Sbjct  134  MEGRDVVGMARTGSGKTAAFVLPLIERLKSRQPGGVRAVILSPSRELALQTYKQVKEFSH  193

Query  71   LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV  130
                 ++  + GD      F  +    D+++CT           + E   +L     IV 
Sbjct  194  GTNLQSIVLIGGD-SLEEDFSKMMTKPDIIVCTPGRFLH----LKVEMQYDLMTVQYIVF  248

Query  131  DECHH  135
            DE   
Sbjct  249  DEADR  253


>sp|Q6CKI1|PRP5_KLULA Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 
2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 
GN=PRP5 PE=3 SV=1
Length=812

 Score = 91.8 bits (226),  Expect = 7e-18, Method: Composition-based stats.
 Identities = 37/218 (17%), Positives = 71/218 (33%), Gaps = 20/218 (9%)

Query  275  QEQRVYALHLR-RYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD  333
            +  R++ L    + N  +      +     +A      +   ++T     +  + +    
Sbjct  405  EADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFPSKLKHFASRTLKNPIQITINSKSLI  464

Query  334  RKNELAHLATHGPENPKLEMLEKILQRQF--SSSNSPRGIIFTRTRQSAHSLLLWLQQQQ  391
             +N    +     E+ K E L K L  +         + IIF  ++Q    L   L    
Sbjct  465  NENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDEKTIIFVGSQQLCDLLYDEL----  520

Query  392  GLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN  451
                      LL G             ++   +QKF++    +L+ T V   GL++P  +
Sbjct  521  ----------LLNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEVS  570

Query  452  VVVRYGLLTNEISMVQARGRARAD---QSVYAFVATEG  486
            +V+ Y         V   GR           +FV  + 
Sbjct  571  LVIIYNAAKTIAQYVHTVGRTGRGTNNGVALSFVMVDE  608


 Score = 52.1 bits (123),  Expect = 1e-05, Method: Composition-based stats.
 Identities = 27/138 (20%), Positives = 48/138 (35%), Gaps = 11/138 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYV-----AKRH--LETVDGAKV-VVLVNRVH  58
            Q + I   + G+++I    TG+GKT  A  +      K    L   +   + ++L     
Sbjct  273  QCQAIPAIMSGRDVIGISKTGSGKT-VAFLLPLVRQIKAQPPLAPDETGPIGLILTPTRE  331

Query  59   LVTQ-HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE  117
            L  Q   E  +       +     G    +     L R  D+++ T       +T     
Sbjct  332  LAVQIQEEALKFCKGSGISSICCVGGSELKQQINELKRGVDIIVATPGRFIDLMTLNSGH  391

Query  118  EHVELTVFSLIVVDECHH  135
              +  T  S +V+DE   
Sbjct  392  -LLSPTRISFVVMDEADR  408


>sp|Q54EC2|DDX55_DICDI Probable ATP-dependent RNA helicase ddx55 
OS=Dictyostelium discoideum OX=44689 GN=ddx55 PE=3 SV=1
Length=663

 Score = 91.4 bits (225),  Expect = 8e-18, Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 69/191 (36%), Gaps = 18/191 (9%)

Query  349  PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN  408
            P  E L +++    +  +  + II+  T  +       LQ            ++L G   
Sbjct  293  PVEERLNQLVHFLLNHIDKNKIIIYFLTCSTVDYFFKILQ----------SVKVLSGKPF  342

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
             S         + +V   F   T   L++T +A  GLDIP+ + V++Y    +  + V  
Sbjct  343  FSLHGKAPHSQRIKVFDSFSQATNGCLLSTDLAARGLDIPNVDWVLQYDSPQDPKAFVHR  402

Query  469  RGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQ  527
             GR AR  +   A +             +  +E L  + V  V+ +        + ++++
Sbjct  403  IGRTARMGRDGNALIFLSPEE-------DSYIEFLKIKKVPLVEMVKAENVTNVLPEIKK  455

Query  528  AALTKRAAQAA  538
             +   R     
Sbjct  456  ISFNDREIMEK  466


>sp|A3QA31|RAPA_SHELP RNA polymerase-associated protein RapA OS=Shewanella 
loihica (strain ATCC BAA-1088 / PV-4) OX=323850 
GN=rapA PE=3 SV=1
Length=968

 Score = 91.8 bits (226),  Expect = 8e-18, Method: Composition-based stats.
 Identities = 76/453 (17%), Positives = 156/453 (34%), Gaps = 42/453 (9%)

Query  27   GAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGP  86
            G GKT  A  +  + L T    +++++V    L  Q   E  R  + R++V      +  
Sbjct  179  GLGKTIEAGLIIHQQLLTGRAERILIIVPD-TLRHQWLVEMLRRFNLRFSVFDEDRCVEA  237

Query  87   RAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHT--HKDTVYNV  144
             A   +      L+IC+       L   +  +      + L+VVDE HH    ++     
Sbjct  238  YADHDNPFYTEQLVICS----LELLRKKKRLDQALDADWDLMVVDEAHHLEWTEEEPSRA  293

Query  145  IMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCC  204
                   +    ++ +P VL LTA+P         G  +H  +L   LD       Q   
Sbjct  294  -----YRVVEALSEVVPGVLLLTATP------DQLGHQSHFARL-RLLDPDRFYDYQAFL  341

Query  205  PQLQEHSQQPCKQYNLC-HRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVV  263
             + + + +       L   +R  D     L +L+++     ++    R    +  + +  
Sbjct  342  KEEESYKEVASAADALASGKRLPDEAVASLTELLNEK----DITPALRLIEDESVDNEQR  397

Query  264  KLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCA  323
              + +  L  L ++      L R + A +     R  +A        ++     + ++  
Sbjct  398  DQARSELLQELLDRHGTGRVLYRNSRASVKGFPTRIFNAHPQTMPAQYKTAARVSDMMGG  457

Query  324  ERRLLALFDDRKNELAHLATHGPENP---KLEMLEKILQRQFSSSNSPRGIIFTRTRQSA  380
            +  L A      +          ++    K +     L     +  S + +I     ++A
Sbjct  458  QTDLTAKVKQALSPEKLYQAFESDSASWWKFDPRVDWLIDFLKNHRSKKVLIIASQAETA  517

Query  381  HSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF--QDGTLNLLVAT  438
             SL   L+ ++G+Q                    M+  ++ +    F  + G    L+ +
Sbjct  518  LSLEEALRTREGIQATVFH-------------EGMSIIERDKAGAYFAQESGGAQALICS  564

Query  439  SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
             +  EG +    + +V + L  N   + Q  GR
Sbjct  565  EIGSEGRNFQFASHLVLFDLPLNPDLLEQRIGR  597


>sp|A2QWW0|MAK5_ASPNC ATP-dependent RNA helicase mak5 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=mak5 PE=3 SV=1
Length=766

 Score = 91.8 bits (226),  Expect = 8e-18, Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 18/124 (15%)

Query  365  SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI  424
            +   R ++FT +  +   L   LQ               +G    +  + M Q+ +   +
Sbjct  493  NPKHRTLVFTNSISAVRRLTQLLQN--------------LGLPALALHSSMAQKARLRSV  538

Query  425  QKFQDGTLN---LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYA  480
            ++F   T +   +LVAT VA  GLDI   + V+ Y       + V   GR ARA  S  +
Sbjct  539  ERFSSPTSDPSSILVATDVAARGLDIKGIDFVIHYHAPRAADTYVHRSGRTARAGASGKS  598

Query  481  FVAT  484
             +  
Sbjct  599  VIIC  602


 Score = 50.6 bits (119),  Expect = 5e-05, Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 52/140 (37%), Gaps = 21/140 (15%)

Query  15   LEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVD---------GAK-----VVVLVNRVHL  59
            L+G ++I    TG+GKT A    + + +LE              K      +++     L
Sbjct  227  LDGHDVIGKASTGSGKTLAFGIPILEHYLEKRRQDLRAGKEEKKKDTAPIALIMSPTREL  286

Query  60   VTQ---HGEEFRRMLDGRW-TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE  115
              Q   H  E      G    +  L+G +  +     +    D++I T   +   L+S +
Sbjct  287  AHQLAKHIGELALHAPGSNARIALLTGGLSVQKQ-QRVLAGADIVIGTPGRVWEVLSSGQ  345

Query  116  EEEHVELTVFSLIVVDECHH  135
                 +++    +V+DE   
Sbjct  346  GL-IRKMSEIKFLVIDEADR  364


>sp|Q12389|DBP10_YEAST ATP-dependent RNA helicase DBP10 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 
GN=DBP10 PE=1 SV=2
Length=995

 Score = 91.8 bits (226),  Expect = 8e-18, Method: Composition-based stats.
 Identities = 47/274 (17%), Positives = 89/274 (32%), Gaps = 23/274 (8%)

Query  218  YNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQ  277
            ++   R  +  F + L +L+  +    +    S           +V   +A  +  +  +
Sbjct  287  FDEADRLFEMGFQEQLNELLASLPTTRQTLLFSATL-----PNSLVDFVKAGLVNPVLVR  341

Query  278  RVYALHLRRYNDALLIHD--TVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRK  335
                  +    + L +      R  + L  LQ+       T  Q+   +        D  
Sbjct  342  LDAETKVSENLEMLFLSSKNADREANLLYILQEIIKIPLATSEQLQKLQNSNNEADSDSD  401

Query  336  NELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQT  395
            +E            K +  ++ +       +    I+F  TR     +   L+       
Sbjct  402  DE-NDRQKKRRNFKKEKFRKQKMPAANELPSEKATILFVPTRHHVEYISQLLRD------  454

Query  396  VDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVR  455
                   LI    S     + Q  ++  +  F+ G  ++LV T VA  G+DIP    V+ 
Sbjct  455  ----CGYLI----SYIYGTLDQHARKRQLYNFRAGLTSILVVTDVAARGVDIPMLANVIN  506

Query  456  YGLLTNEISMVQARGR-ARADQSVYAFVATEGSR  488
            Y L  +    V   GR ARA    +A+     + 
Sbjct  507  YTLPGSSKIFVHRVGRTARAGNKGWAYSIVAENE  540


 Score = 58.3 bits (139),  Expect = 2e-07, Method: Composition-based stats.
 Identities = 54/294 (18%), Positives = 103/294 (35%), Gaps = 22/294 (7%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA---KVVVLVNRVHLVTQHGEEFRRML  71
            L+ ++I+    TG+GKT A        L++  G    + V+L     L  Q    F+   
Sbjct  172  LQSRDIVGMARTGSGKTAAFILPMVEKLKSHSGKIGARAVILSPSRELAMQTFNVFKDFA  231

Query  72   DG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV  130
             G       L+G       FG +    D++I T           + E +++L     +V 
Sbjct  232  RGTELRSVLLTGGDSLEEQFGMMMTNPDVIIATPGRFLH----LKVEMNLDLKSVEYVVF  287

Query  131  DECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS-PGTGGASKLDGAINHVLQLC  189
            DE         + +   + L   L       Q L  +A+ P +       G +N VL   
Sbjct  288  DEADRL-----FEMGFQEQLNELLASLPTTRQTLLFSATLPNSLVDFVKAGLVNPVLV--  340

Query  190  ANLDTWCIMSPQNCCPQL-QEHSQQPCKQYNLCHRRSQDPFGDL--LKKLMDQIH--DHL  244
              LD    +S       L  +++ +      +     + P      L+KL +  +  D  
Sbjct  341  -RLDAETKVSENLEMLFLSSKNADREANLLYILQEIIKIPLATSEQLQKLQNSNNEADSD  399

Query  245  EMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVR  298
               E  R+   + ++++  +  +  A   L  ++   L +   +    I   +R
Sbjct  400  SDDENDRQKKRRNFKKEKFRKQKMPAANELPSEKATILFVPTRHHVEYISQLLR  453


>sp|O00148|DX39A_HUMAN ATP-dependent RNA helicase DDX39A OS=Homo 
sapiens OX=9606 GN=DDX39A PE=1 SV=2
Length=427

 Score = 90.2 bits (222),  Expect = 8e-18, Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 70/199 (35%), Gaps = 29/199 (15%)

Query  310  YHREHVTKTQILCAERRLLALFDDRKNELAHLATHG--------PENPKLEMLEKILQRQ  361
                 ++K       + +    +   ++   L  HG         ++ K   L  +L   
Sbjct  225  MFSATLSKDIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVL  284

Query  362  FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ  421
                   + IIF ++ Q   +L   L +Q                   +    M Q ++ 
Sbjct  285  ----EFNQVIIFVKSVQRCMALAQLLVEQNFPAI--------------AIHRGMAQEERL  326

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQS---V  478
               Q+F+D    +LVAT++   G+DI   N+V  Y +  +  + +    RA    +    
Sbjct  327  SRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLA  386

Query  479  YAFVATEGSRELKRELINE  497
              FV+ E   ++  ++ + 
Sbjct  387  ITFVSDENDAKILNDVQDR  405


 Score = 47.9 bits (112),  Expect = 3e-04, Method: Composition-based stats.
 Identities = 26/131 (20%), Positives = 46/131 (35%), Gaps = 8/131 (6%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQ---  62
            Q E I  A+ G +++    +G GKT        + +E V+G   V+V+ +   L  Q   
Sbjct  71   QHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRELAFQISK  130

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
              E F + +          G    +        C  +++ T       + +        L
Sbjct  131  EYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTP----GRILALVRNRSFSL  186

Query  123  TVFSLIVVDEC  133
                  V+DEC
Sbjct  187  KNVKHFVLDEC  197


>sp|A6ZXU0|DBP10_YEAS7 ATP-dependent RNA helicase DBP10 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=DBP10 PE=3 
SV=1
Length=995

 Score = 91.8 bits (226),  Expect = 8e-18, Method: Composition-based stats.
 Identities = 47/274 (17%), Positives = 89/274 (32%), Gaps = 23/274 (8%)

Query  218  YNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQ  277
            ++   R  +  F + L +L+  +    +    S           +V   +A  +  +  +
Sbjct  287  FDEADRLFEMGFQEQLNELLASLPTTRQTLLFSATL-----PNSLVDFVKAGLVNPVLVR  341

Query  278  RVYALHLRRYNDALLIHD--TVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRK  335
                  +    + L +      R  + L  LQ+       T  Q+   +        D  
Sbjct  342  LDAETKVSENLEMLFLSSKNADREANLLYILQEIIKIPLATSEQLQKLQNSNNEADSDSD  401

Query  336  NELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQT  395
            +E            K +  ++ +       +    I+F  TR     +   L+       
Sbjct  402  DE-NDRQKKRRNFKKEKFRKQKMPAANELPSEKATILFVPTRHHVEYISQLLRD------  454

Query  396  VDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVR  455
                   LI    S     + Q  ++  +  F+ G  ++LV T VA  G+DIP    V+ 
Sbjct  455  ----CGYLI----SYIYGTLDQHARKRQLYNFRAGLTSILVVTDVAARGVDIPMLANVIN  506

Query  456  YGLLTNEISMVQARGR-ARADQSVYAFVATEGSR  488
            Y L  +    V   GR ARA    +A+     + 
Sbjct  507  YTLPGSSKIFVHRVGRTARAGNKGWAYSIVAENE  540


 Score = 58.3 bits (139),  Expect = 2e-07, Method: Composition-based stats.
 Identities = 54/294 (18%), Positives = 103/294 (35%), Gaps = 22/294 (7%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA---KVVVLVNRVHLVTQHGEEFRRML  71
            L+ ++I+    TG+GKT A        L++  G    + V+L     L  Q    F+   
Sbjct  172  LQSRDIVGMARTGSGKTAAFILPMVEKLKSHSGKIGARAVILSPSRELAMQTFNVFKDFA  231

Query  72   DG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV  130
             G       L+G       FG +    D++I T           + E +++L     +V 
Sbjct  232  RGTELRSVLLTGGDSLEEQFGMMMTNPDVIIATPGRFLH----LKVEMNLDLKSVEYVVF  287

Query  131  DECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS-PGTGGASKLDGAINHVLQLC  189
            DE         + +   + L   L       Q L  +A+ P +       G +N VL   
Sbjct  288  DEADRL-----FEMGFQEQLNELLASLPTTRQTLLFSATLPNSLVDFVKAGLVNPVLV--  340

Query  190  ANLDTWCIMSPQNCCPQL-QEHSQQPCKQYNLCHRRSQDPFGDL--LKKLMDQIH--DHL  244
              LD    +S       L  +++ +      +     + P      L+KL +  +  D  
Sbjct  341  -RLDAETKVSENLEMLFLSSKNADREANLLYILQEIIKIPLATSEQLQKLQNSNNEADSD  399

Query  245  EMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVR  298
               E  R+   + ++++  +  +  A   L  ++   L +   +    I   +R
Sbjct  400  SDDENDRQKKRRNFKKEKFRKQKMPAANELPSEKATILFVPTRHHVEYISQLLR  453


>sp|A7F8V8|DBP7_SCLS1 ATP-dependent RNA helicase dbp7 OS=Sclerotinia 
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 
GN=dbp7 PE=3 SV=1
Length=877

 Score = 91.4 bits (225),  Expect = 9e-18, Method: Composition-based stats.
 Identities = 86/545 (16%), Positives = 164/545 (30%), Gaps = 113/545 (21%)

Query  22   IWLPTGAGKTRAAAY-VAKRHLETVDGA---------KVVVLVNRVHLVTQHGEEFRRML  71
            I   TG+GKT A    + +R L   D             ++L     L  Q      ++L
Sbjct  299  IQAETGSGKTLAYLLPIVERILALSDNGIQIHRDSGLFAIILSPTRELCKQIAAVLEKVL  358

Query  72   --DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIV  129
                    TT++G    ++    L +  ++L+ T   L   L + E    + +     +V
Sbjct  359  RCAPWIVGTTVNGGESKQSEKARLRKGVNILVATPGRLADHLDNTE---VLNVATVRWLV  415

Query  130  VDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLC  189
            +DE      D     +M    E +++                 G  S   G+   +    
Sbjct  416  LDE-----GD----RLMELGFEEEIKGIVEK-----------IGRRSVASGSSEMMSLPK  455

Query  190  ANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPEL  249
              +   C  + +    +L E S +           S+    D    +           +L
Sbjct  456  RRVTILCSATMKMNVQRLGEISLKDAVHIQA--DPSEQEKQDKANGIEADDKAFSAPTQL  513

Query  250  SRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDF  309
             + +     + ++V L+     A  ++  V          A++      +VD   +L   
Sbjct  514  KQSYAIVPAKLRLVTLTALLKRAFARKGSVMK--------AIVFMSCADSVDFHFSL---  562

Query  310  YHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPR  369
                   K+     E ++      +   +    THG                  S+NS  
Sbjct  563  -FSRSAEKSAEASEEGKVDPPTLPKSELIKETITHGATI---------------SNNSNP  606

Query  370  GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD  429
             I               L +  G    +IR   L     S+                   
Sbjct  607  VI---------------LHKLHGSLAQNIRTATLKAYSESADPC----------------  635

Query  430  GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVA-----  483
                +L+ T VA  GLD+P+ + V+ Y    +    +   GR ARA +   A +      
Sbjct  636  ----VLICTDVASRGLDLPNVDFVIEYDPPFSAEDHLHRVGRTARAGREGRALIFLMPGT  691

Query  484  --------TEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAA  535
                      G RE ++ L +   E L+++      +  +        ++++ +L     
Sbjct  692  EEEYVSILASGYREGRKALTHHTAEDLIQKGFGGTGREWEERATNFQLEVERWSLDSPRY  751

Query  536  QAAQR  540
                R
Sbjct  752  LEMAR  756


>sp|Q0UHM7|DBP7_PHANO ATP-dependent RNA helicase DBP7 OS=Phaeosphaeria 
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) 
OX=321614 GN=DBP7 PE=3 SV=1
Length=831

 Score = 91.4 bits (225),  Expect = 9e-18, Method: Composition-based stats.
 Identities = 67/482 (14%), Positives = 138/482 (29%), Gaps = 95/482 (20%)

Query  22   IWLPTGAGKTRAAAY-VAKRHLETVDGAK---------------VVVLVNRVHLVTQHGE  65
            I   TG+GKT A    + +R +E     K                +++     L  Q   
Sbjct  229  IQAETGSGKTLAYLLPIVQRLMELSANMKKHKDDDAVQRNSGLFAIIMAPTRELSKQIAL  288

Query  66   EFRRMLD--GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELT  123
               ++L        TT+ G    ++    L +  ++L+ T   L   L   E  E ++++
Sbjct  289  VLEKLLGCAHWLVATTVIGGEKKKSEKARLRKGINILVATPGRLADHL---EHTEALDVS  345

Query  124  VFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAIN  183
                +V+DE     +      I      L L+      ++ GL   P           + 
Sbjct  346  NVRWLVLDEGDRLMELGFEQEIQKIVGALNLRMRGNKTRIPGL---PDKRTTVLCSATMK  402

Query  184  HVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDH  243
              ++    +     +  +    + ++   +P  + +    + +                 
Sbjct  403  MDVERLGQISLKDAVHLRADPTEREQEGDEPQDERSYAPAQLK-----------------  445

Query  244  LEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDAL  303
                        Q Y     KL   + +A L+  R +          + +          
Sbjct  446  ------------QSYAVVAPKLRLVSLIAYLK--RAFTRKGSVMKAIVFVSCADSVDFHF  491

Query  304  AALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFS  363
              L      ++                 + +K+     A    +  KL +         S
Sbjct  492  DILTSNLEEKNEKAEGTKDDTEEKADDDEPKKSTKKPKAIPQADPTKLSV-THAESPVLS  550

Query  364  SSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEV  423
              +            +A+ L                               + Q  +   
Sbjct  551  PKSHA---------VTAYRL----------------------------HGSLQQSLRTST  573

Query  424  IQKF-QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF  481
            +  F ++    +L+AT VA  GLD+P+ ++VV +         +   GR ARA +   A 
Sbjct  574  LAHFTKNNDAAVLIATDVASRGLDLPNVDLVVEFDPAFAREDHLHRIGRTARAGRDGRAC  633

Query  482  VA  483
            + 
Sbjct  634  IF  635


>sp|Q0JL73|RH26_ORYSJ DEAD-box ATP-dependent RNA helicase 26 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os01g0618500 PE=2 
SV=1
Length=536

 Score = 90.6 bits (223),  Expect = 9e-18, Method: Composition-based stats.
 Identities = 43/332 (13%), Positives = 113/332 (34%), Gaps = 40/332 (12%)

Query  149  YLELKLQRAQPLPQ---VLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCP  205
            +L   ++    LP+   +  L   P    A+++      +L+   +L    ++       
Sbjct  128  FLLPAIELLSTLPRSPSINLLVICPTRELANQVAAEARKLLKYHRSLGVQVVIGGTKLPQ  187

Query  206  QLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKL  265
            + +     PC+       R +D   +            +++  L      ++ +    + 
Sbjct  188  EQRSMQSNPCQILVATPGRLKDHLENT--PGFSNRIKGVKVLVLDE--ADRLLDMGFRRD  243

Query  266  SEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAER  325
             E       +E++           +  + + VR +  +A  + +     V +        
Sbjct  244  IEKIIAFIPKERQTLLF-------SATVPEEVRQISHIAMKRGYKFINTVKEG-------  289

Query  326  RLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLL  385
                  ++  ++++ +    P +    +L  +L++  +     + I+F  T      L+ 
Sbjct  290  -----DEETHSQVSQMYMVAPLDLHFSILYNVLKKHIAEDADYKVIVFC-TTAMVTKLVA  343

Query  386  WLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGL  445
             +  Q  L   +I              +  +Q  + +V  +F+     +LV++ V+  G+
Sbjct  344  EVLSQLKLNIREIH-------------SRKSQSARTKVSDEFRKSKGLILVSSDVSARGV  390

Query  446  DIPHCNVVVRYGLLTNEISMVQARGRARADQS  477
            D P   +V++ GL  +    +   GR      
Sbjct  391  DYPDVTLVIQVGLPADREQYIHRLGRTGRKGK  422


 Score = 56.7 bits (135),  Expect = 5e-07, Method: Composition-based stats.
 Identities = 24/128 (19%), Positives = 49/128 (38%), Gaps = 9/128 (7%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYV----AKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRM  70
            L+G++++    TG GKT  A  +        L       ++V+     L  Q   E R++
Sbjct  109  LQGEDVLAKAKTGTGKT-VAFLLPAIELLSTLPRSPSINLLVICPTRELANQVAAEARKL  167

Query  71   LDGRWTVT---TLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSL  127
            L    ++     + G   P+      +    +L+ T   L+  L +     +  +    +
Sbjct  168  LKYHRSLGVQVVIGGTKLPQEQRSMQSNPCQILVATPGRLKDHLENTPGFSN-RIKGVKV  226

Query  128  IVVDECHH  135
            +V+DE   
Sbjct  227  LVLDEADR  234


>sp|A5DZT7|DBP10_LODEL ATP-dependent RNA helicase DBP10 OS=Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=DBP10 PE=3 SV=1
Length=948

 Score = 91.8 bits (226),  Expect = 9e-18, Method: Composition-based stats.
 Identities = 43/279 (15%), Positives = 85/279 (30%), Gaps = 32/279 (11%)

Query  218  YNLCHRRSQDPFGDLLKKLM-------DQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAA  270
            ++   R  +  F + L +L+         +     +P    +F        V+   +A +
Sbjct  270  FDEADRLFEMGFAEQLNELLLALPSNRQSLLFSATLPRSLVEFAKAGLTNPVLVRLDADS  329

Query  271  LAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLAL  330
                  Q  Y    R   +A L++     +       +   +      + + ++      
Sbjct  330  KLSENLQMAYFTTKRNEREANLLYILQEVIKMPLGTPEEVKKLAAMDKRSIESDEENEEA  389

Query  331  FDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQ  390
             +    +           P  + L           +    IIF  T+     +   L+  
Sbjct  390  KEQNNGKKRKYKFKKERMPSAKEL----------PSEKSTIIFVPTKHHVEYVTSLLKDA  439

Query  391  QGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHC  450
                          G   S     + Q  ++  +  F+ G   +LV T VA  G+DIP  
Sbjct  440  --------------GYLVSYIYGTLDQHARKNQLYLFRIGLTKILVVTDVAARGIDIPVL  485

Query  451  NVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSR  488
              V+ + L  +    +   GR ARA    +A+     S 
Sbjct  486  ANVINFTLPGSSKIFIHRVGRTARAGNKGWAYSIVNSSE  524


 Score = 52.5 bits (124),  Expect = 1e-05, Method: Composition-based stats.
 Identities = 25/114 (22%), Positives = 42/114 (37%), Gaps = 9/114 (8%)

Query  26   TGAGKT--RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFR--RMLDGRWTVTTLS  81
            TG+GKT       + K  L +  G + V+L     L  Q  ++ +         ++  + 
Sbjct  167  TGSGKTAAFVLPLIEKLKLRSPSGVRAVILSPSRELALQTYKQVKEFSHGTNLQSIVLIG  226

Query  82   GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH  135
            GD      FG +    D+++CT           + E   +L     IV DE   
Sbjct  227  GD-SLEEDFGKMMTKPDIIVCTPGRFLH----LKVEMQYDLMSVQYIVFDEADR  275


>sp|A3GG51|MAK5_PICST ATP-dependent RNA helicase MAK5 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=MAK5 PE=3 SV=2
Length=836

 Score = 91.4 bits (225),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 41/276 (15%), Positives = 88/276 (32%), Gaps = 36/276 (13%)

Query  232  LLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVK--LSEAAALAGLQEQRVYALHLRRYND  289
             + +L+ +  D  +    +        ++ +      E   +  L  +         +  
Sbjct  365  RILELLQKDEDLTKRLASTDIIVLDEADRLLQDGHFEEFETILDLFRKNRPKNKTFPWKW  424

Query  290  ALLIHDTVRAVDALAAL-QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPEN  348
              L+     + D    L ++    +  ++   L     +L L +D+             N
Sbjct  425  QTLVFSATFSRDLFGKLDKNQKSHKRNSEGSSLIGNDEILNLLNDKLKFKDTRPALVDAN  484

Query  349  PKLEMLEKILQRQFSSSNSPR--------------GIIFTRTRQSAHSLLLWLQQQQGLQ  394
            PK  +   I +       + R               ++F  +  S   L+ +L       
Sbjct  485  PKEIVSGNITEALVECGPTERDLYLYYFLLMYKGSTLVFANSIDSVKRLVPFLNNLNIPA  544

Query  395  TVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD----GTLNLLVATSVAEEGLDIPHC  450
                           +  + M Q+ +   +++FQ         +L+A+ VA  GLDIP+ 
Sbjct  545  F--------------AIHSSMIQKQRLRALERFQKASEKNDTAVLIASDVAARGLDIPNI  590

Query  451  NVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATE  485
            + V  Y L  +    +   GR ARA +   + +   
Sbjct  591  DHVAHYHLPRSADVYIHRSGRTARAGKEGVSVMFCS  626


 Score = 44.8 bits (104),  Expect = 0.003, Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 50/143 (35%), Gaps = 18/143 (13%)

Query  14   ALEGKNIIIWLPTGAGKTRAAAYVAKR-------HLETVDGAKV------VVLVNRVHLV  60
            A EGK+++    TG+GKT A               +      K+      ++      L 
Sbjct  256  AAEGKDVVGKAITGSGKTLAYGIPILEKYLSNLSIINQNRQKKIINHPTGIIFAPTRELA  315

Query  61   TQ---HGEEFRRMLDGRWT-VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE  116
             Q   H     +        + +++G +  +     L+    +++ T   +   L   +E
Sbjct  316  HQVVSHLNSLAKYSPLSTNGIVSITGGLSIQKQERLLSHGPGIIVATPGRILE-LLQKDE  374

Query  117  EEHVELTVFSLIVVDECHHTHKD  139
            +    L    +IV+DE     +D
Sbjct  375  DLTKRLASTDIIVLDEADRLLQD  397


>sp|Q8GXD6|RH49_ARATH DEAD-box ATP-dependent RNA helicase 49 OS=Arabidopsis 
thaliana OX=3702 GN=RH49 PE=2 SV=2
Length=558

 Score = 90.6 bits (223),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 49/339 (14%), Positives = 105/339 (31%), Gaps = 52/339 (15%)

Query  152  LKLQRAQPLP-QVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEH  210
             +     P P QV+G+  SP    ++++       +    N+++  ++  +     +   
Sbjct  79   RRSNSYPPKPHQVMGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTL  138

Query  211  SQQPCKQYNLCHRRSQD-----PFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKL  265
             ++          R  D      F D     +  + +   + ++  +        ++ K 
Sbjct  139  EEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQ  198

Query  266  SEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAER  325
                  +  Q Q V  L      +A+ +     +                          
Sbjct  199  RRTGLFSATQTQAVADLAKAGLRNAMEVISGAESK-------------------------  233

Query  326  RLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLL  385
                      + L         + K   L  +L      + + + ++F  T        L
Sbjct  234  ------SKTSSGLYCEYLKCEADQKSSQLVHLLIE----NKNKKLVVFFMTCACVDYWGL  283

Query  386  WLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGL  445
             L +   L+++             S    M Q+ +   +  F + +  +L+ T VA  GL
Sbjct  284  VLSKIPTLKSISF----------FSTHGKMDQKGRDTALASFTEASSGVLLCTDVAARGL  333

Query  446  DIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVA  483
            DIP  + VV+Y    +    +   GR AR ++   A V 
Sbjct  334  DIPGIDYVVQYDPPQDPDVFIHRVGRTARMERQGRAIVF  372


 Score = 45.6 bits (106),  Expect = 0.002, Method: Composition-based stats.
 Identities = 26/139 (19%), Positives = 48/139 (35%), Gaps = 13/139 (9%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVD-----GAKV--VVLVNRVHL  59
            Q E I      K++++   TG+GKT A        +   +       +V  V++     L
Sbjct  43   QAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTREL  102

Query  60   VTQHGEE---FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE  116
              Q  +    F   L    +V  + G               +LLI T   L   +   + 
Sbjct  103  SAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTLEEEGANLLIGTPGRLSDMM---KR  159

Query  117  EEHVELTVFSLIVVDECHH  135
             E ++     ++++DE   
Sbjct  160  MEFLDFRNLEILILDEADR  178


>sp|P45125|UVRB_HAEIN UvrABC system protein B OS=Haemophilus influenzae 
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 
GN=uvrB PE=3 SV=1
Length=679

 Score = 91.0 bits (224),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 45/302 (15%), Positives = 105/302 (35%), Gaps = 26/302 (9%)

Query  307  QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSN  366
            Q  Y        ++  +   ++         L  L    P + +++ L    ++   +  
Sbjct  393  QTIYVSATPGAYELEKSGSEIIDQVVRPTGLLDPLIEIRPVSIQVDDLLSEARQ--RADK  450

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R ++ T T++ A  L  +L +               G       + +   ++ E+I+ 
Sbjct  451  NERVLVTTLTKKMAEDLTDYLDE--------------HGIRVRYLHSDIDTVERVEIIRD  496

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLDIP  ++V          L +E S++Q  GRA  + +  A 
Sbjct  497  LRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAI  556

Query  482  VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEY-QAKIRDLQQAALTKRAAQAAQR  540
            +  +    + + +     ET   +        +     QA  + + +     + A    +
Sbjct  557  LYAD---SITKSMEKAITETNRRREKQTKYNEEHGIVPQALNKKVGELLDIGQGANQKAK  613

Query  541  ENQRQQFPVEHVQLLCINCMVAVGHGSDLRKVEGTHHVNVNP-NFSNYYNVSRDPVVINK  599
             N+++         L      A  +   ++K+E   +       F     +      + +
Sbjct  614  ANKQRGKMAAEPTALYNAPKNAKEYQQQIKKLEQQMYKFAQDLEFEKAAAIRDQLHQLRE  673

Query  600  VF  601
             F
Sbjct  674  QF  675


>sp|A7TLA0|SUB21_VANPO ATP-dependent RNA helicase SUB2-1 OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 
21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=SUB2-1 PE=3 SV=1
Length=441

 Score = 89.9 bits (221),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 62/404 (15%), Positives = 123/404 (30%), Gaps = 51/404 (13%)

Query  129  VVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQV---LGLTASPGTGGASKLDGAINHV  185
            ++D       +   + +    +   +     L Q    LG TA        +LD     V
Sbjct  72   IID----CGFEHP-SEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEV  126

Query  186  LQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLE  245
              +            +N   +  ++     K          +   +LLK      H  + 
Sbjct  127  SVVVICNARELAYQIRNEYLRFSKYMP-DVKTAVFYGGTPINKDAELLKNKETAPHIVVA  185

Query  246  MPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAA  305
             P   +          ++ LS        +  +V      R +   +   T R    +  
Sbjct  186  TPGRLKALVRDK----LIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVM--  239

Query  306  LQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG--------PENPKLEMLEKI  357
                     +++       R L    +   ++ A L  HG         EN K   L ++
Sbjct  240  ----MFSATLSEEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYTKLQENEKNRKLAQL  295

Query  358  LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ  417
            L          + IIF ++ + A+ L   L +                        HM Q
Sbjct  296  LDDL----EFNQVIIFVKSTKRANELTKLLNESNFPAIT--------------VHGHMKQ  337

Query  418  RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQS  477
             ++    + F++    + V+T V   G+DI   N+ + Y L T     +   GRA    +
Sbjct  338  AERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDLTTEADQYLHRVGRAGRFGT  397

Query  478  ---VYAFVATEGSRELK---RELINEALETLMEQAVAAVQKMDQ  515
                 +FV++    E+    +E  +  +    E+ +     ++ 
Sbjct  398  KGLAISFVSSPEDEEVLGKIQERFDVKIAEFPEEGIDPSTYLNN  441


 Score = 47.1 bits (110),  Expect = 4e-04, Method: Composition-based stats.
 Identities = 28/135 (21%), Positives = 52/135 (39%), Gaps = 14/135 (10%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQ---  62
            Q   I  ++ G +++    +G GKT        + L+ V G   VVV+ N   L  Q   
Sbjct  84   QQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVSVVVICNARELAYQIRN  143

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHD----LLICTAELLQMALTSPEEEE  118
                F + +    T     G   P      L +  +    +++ T   L+    +   ++
Sbjct  144  EYLRFSKYMPDVKTAVFYGG--TPINKDAELLKNKETAPHIVVATPGRLK----ALVRDK  197

Query  119  HVELTVFSLIVVDEC  133
             ++L+     V+DEC
Sbjct  198  LIDLSHVKNFVIDEC  212


>sp|A5DDN0|SUB2_PICGU ATP-dependent RNA helicase SUB2 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=SUB2 PE=3 
SV=3
Length=432

 Score = 89.5 bits (220),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 55/357 (15%), Positives = 113/357 (32%), Gaps = 50/357 (14%)

Query  185  VLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHL  244
            VL     LD      P      +  H+++   Q    + R      D+  ++        
Sbjct  103  VLSTLQQLDPV----PGEITTLVICHTRELAYQIRNEYARFSKYMPDVKTEVFYGGIPIA  158

Query  245  EMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALA  304
            +  E  +   T  +    + ++    L  L E++   L+  +          + A+D   
Sbjct  159  KDIEKLKNKDTCPH----IVVATPGRLHALVEEKAIRLNNVKSFVIDECDKVLEAIDMRR  214

Query  305  ALQDFYHREHVTKTQI-----------LCAERRLLALFDDRKNELAHLATHG--------  345
             +QD +      K  +              ++ +    +   ++ A L  HG        
Sbjct  215  DVQDIFRNTPHQKQVMMFSATLSQEIRPVCKKFMQNPLEIYVDDEAKLTLHGLQQYYLKL  274

Query  346  PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
             E  K   L  +L          + IIF ++   A+ L   L                  
Sbjct  275  DEKEKNRKLADLLDSL----EFNQVIIFVKSTSRANELNKLLVASNFPSI----------  320

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM  465
                +  + M Q ++    + F++    + V+T V   G+DI   N+ + Y L       
Sbjct  321  ----AVHSAMPQEERIARYKSFKEFNKRICVSTDVFGRGIDIERINLAINYDLPNEADQY  376

Query  466  VQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKI  522
            +   GRA    +    ++  GS+E +     E LE +  +    + +  +    +  
Sbjct  377  LHRVGRAGRFGTKGLAISFVGSKEDE-----EVLEKIQSRFDVKITEFPEEGVDSST  428


 Score = 42.5 bits (98),  Expect = 0.012, Method: Composition-based stats.
 Identities = 28/135 (21%), Positives = 49/135 (36%), Gaps = 14/135 (10%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQ---  62
            Q   I  ++ G +++    +G GKT        + L+ V G    +V+ +   L  Q   
Sbjct  75   QQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEITTLVICHTRELAYQIRN  134

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHD----LLICTAELLQMALTSPEEEE  118
                F + +    T     G   P A      +  D    +++ T   L     +  EE+
Sbjct  135  EYARFSKYMPDVKTEVFYGG--IPIAKDIEKLKNKDTCPHIVVATPGRLH----ALVEEK  188

Query  119  HVELTVFSLIVVDEC  133
             + L      V+DEC
Sbjct  189  AIRLNNVKSFVIDEC  203


>sp|A6ZXP4|SUB2_YEAS7 ATP-dependent RNA helicase SUB2 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=SUB2 PE=3 SV=1
Length=446

 Score = 89.5 bits (220),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 62/400 (16%), Positives = 120/400 (30%), Gaps = 43/400 (11%)

Query  129  VVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQV---LGLTASPGTGGASKLDGAINHV  185
            ++D       +   + +    +   +     L Q    LG TA        +LD     V
Sbjct  77   IID----CGFEHP-SEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEV  131

Query  186  LQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLE  245
              +            +N   +  ++     K              +LLK      H  + 
Sbjct  132  AVVVICNARELAYQIRNEYLRFSKYMP-DVKTAVFYGGTPISKDAELLKNKDTAPHIVVA  190

Query  246  MPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAA  305
             P   +    + Y      LS        +  +V      R +   +   T R    +  
Sbjct  191  TPGRLKALVREKYID----LSHVKNFVIDECDKVLEELDMRRDVQEIFRATPRDKQVM--  244

Query  306  LQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPE--NPKLEM--LEKILQRQ  361
                     +++       R L    +   ++ A L  HG +    KLE     + L + 
Sbjct  245  ----MFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLEEREKNRKLAQL  300

Query  362  FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ  421
                   + IIF ++   A+ L   L                          HM Q ++ 
Sbjct  301  LDDLEFNQVIIFVKSTTRANELTKLLNASNFPAIT--------------VHGHMKQEERI  346

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQS---V  478
               + F+D    + V+T V   G+DI   N+ + Y L       +   GRA    +    
Sbjct  347  ARYKAFKDFEKRICVSTDVFGRGIDIERINLAINYDLTNEADQYLHRVGRAGRFGTKGLA  406

Query  479  YAFVATEGSRELK---RELINEALETLMEQAVAAVQKMDQ  515
             +FV+++   E+    +E  +  +    E+ +     ++ 
Sbjct  407  ISFVSSKEDEEVLAKIQERFDVKIAEFPEEGIDPSTYLNN  446


 Score = 50.2 bits (118),  Expect = 4e-05, Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 14/135 (10%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQ---  62
            Q   I  ++ G +++    +G GKT        + L+ V G   VVV+ N   L  Q   
Sbjct  89   QQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVAVVVICNARELAYQIRN  148

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHD----LLICTAELLQMALTSPEEEE  118
                F + +    T     G   P +    L +  D    +++ T   L+    +   E+
Sbjct  149  EYLRFSKYMPDVKTAVFYGG--TPISKDAELLKNKDTAPHIVVATPGRLK----ALVREK  202

Query  119  HVELTVFSLIVVDEC  133
            +++L+     V+DEC
Sbjct  203  YIDLSHVKNFVIDEC  217


>sp|Q07478|SUB2_YEAST ATP-dependent RNA helicase SUB2 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=SUB2 
PE=1 SV=1
Length=446

 Score = 89.5 bits (220),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 62/400 (16%), Positives = 120/400 (30%), Gaps = 43/400 (11%)

Query  129  VVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQV---LGLTASPGTGGASKLDGAINHV  185
            ++D       +   + +    +   +     L Q    LG TA        +LD     V
Sbjct  77   IID----CGFEHP-SEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEV  131

Query  186  LQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLE  245
              +            +N   +  ++     K              +LLK      H  + 
Sbjct  132  AVVVICNARELAYQIRNEYLRFSKYMP-DVKTAVFYGGTPISKDAELLKNKDTAPHIVVA  190

Query  246  MPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAA  305
             P   +    + Y      LS        +  +V      R +   +   T R    +  
Sbjct  191  TPGRLKALVREKYID----LSHVKNFVIDECDKVLEELDMRRDVQEIFRATPRDKQVM--  244

Query  306  LQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPE--NPKLEM--LEKILQRQ  361
                     +++       R L    +   ++ A L  HG +    KLE     + L + 
Sbjct  245  ----MFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLEEREKNRKLAQL  300

Query  362  FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ  421
                   + IIF ++   A+ L   L                          HM Q ++ 
Sbjct  301  LDDLEFNQVIIFVKSTTRANELTKLLNASNFPAIT--------------VHGHMKQEERI  346

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQS---V  478
               + F+D    + V+T V   G+DI   N+ + Y L       +   GRA    +    
Sbjct  347  ARYKAFKDFEKRICVSTDVFGRGIDIERINLAINYDLTNEADQYLHRVGRAGRFGTKGLA  406

Query  479  YAFVATEGSRELK---RELINEALETLMEQAVAAVQKMDQ  515
             +FV+++   E+    +E  +  +    E+ +     ++ 
Sbjct  407  ISFVSSKEDEEVLAKIQERFDVKIAEFPEEGIDPSTYLNN  446


 Score = 50.2 bits (118),  Expect = 4e-05, Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 14/135 (10%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQ---  62
            Q   I  ++ G +++    +G GKT        + L+ V G   VVV+ N   L  Q   
Sbjct  89   QQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVAVVVICNARELAYQIRN  148

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHD----LLICTAELLQMALTSPEEEE  118
                F + +    T     G   P +    L +  D    +++ T   L+    +   E+
Sbjct  149  EYLRFSKYMPDVKTAVFYGG--TPISKDAELLKNKDTAPHIVVATPGRLK----ALVREK  202

Query  119  HVELTVFSLIVVDEC  133
            +++L+     V+DEC
Sbjct  203  YIDLSHVKNFVIDEC  217


>sp|Q757U8|DBP10_EREGS ATP-dependent RNA helicase DBP10 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=DBP10 PE=3 SV=1
Length=960

 Score = 91.0 bits (224),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 32/120 (27%), Positives = 45/120 (38%), Gaps = 15/120 (13%)

Query  370  GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD  429
             IIF  TR     +   L+                G   S     + Q  +++ +  F+ 
Sbjct  413  TIIFVSTRHHVEYVSNLLKDC--------------GYLVSYLYGTLDQHARRQQLHNFRC  458

Query  430  GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSR  488
            G  N+LV T VA  G+DIP    VV   L  +    V   GR ARA    +A+     S 
Sbjct  459  GLTNILVVTDVAARGVDIPLLANVVNMSLPASSKIFVHRVGRTARAGNKGWAYTILSESE  518


 Score = 54.8 bits (130),  Expect = 3e-06, Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 48/125 (38%), Gaps = 8/125 (6%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVD---GAKVVVLVNRVHLVTQHGEEFRRML  71
            L+ ++I+    TG+GKT A        L+      GA+ ++L     L  Q  + F+   
Sbjct  155  LQQRDIVGMARTGSGKTAAFVLPLIEKLKMHSAKIGARAMILSPSRELAMQTHKVFKEFA  214

Query  72   DGRW-TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV  130
             G       L+G  G    F  +    D++I T           + E +++L     +V 
Sbjct  215  KGSNLRSVLLTGGDGLEDQFSMMMSNPDVIIATPGRFLH----LKVEMNLDLHSIEYVVF  270

Query  131  DECHH  135
            DE   
Sbjct  271  DEADR  275


>sp|Q754U8|PRP5_EREGS Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Eremothecium gossypii (strain ATCC 10895 / CBS 
109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=PRP5 PE=3 SV=2
Length=855

 Score = 91.0 bits (224),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 40/247 (16%), Positives = 82/247 (33%), Gaps = 18/247 (7%)

Query  275  QEQRVYALHLR-RYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD  333
            +  R++ L    + N  +      +     +A      +   +K         + +    
Sbjct  436  EADRLFDLGFEPQVNQIMKCIRPDKQCVLFSATFPNKLKSFASKILHDPVYITVNSKSLI  495

Query  334  RKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGL  393
             +N    +     E  K + L   L     + N  + I+F  ++Q    L   L +  G 
Sbjct  496  NENIEQKVEIFSNEEDKFKSLIHWLALTQQNLNDEKTIVFVSSQQICDILYNRL-EANGF  554

Query  394  QTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV  453
             T  I A  +               ++   ++ F++    +L+ T V   GL++P  ++V
Sbjct  555  TTFAIHAGKIY-------------TERAWNLKCFKETANGILICTEVLSRGLNVPEVSLV  601

Query  454  VRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEAL--ETLMEQAVAAV  510
            + Y         V   GR AR      A      +      ++ +++  E L +   A V
Sbjct  602  IIYNAAKTFAQYVHTTGRTARGSNKGTALTLLMNTELAASYILMKSMRDEELNKHHDATV  661

Query  511  QKMDQAE  517
              + Q  
Sbjct  662  STLKQMS  668


 Score = 52.9 bits (125),  Expect = 8e-06, Method: Composition-based stats.
 Identities = 26/138 (19%), Positives = 51/138 (37%), Gaps = 10/138 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVD-------GAKVVVLVNRVHL  59
            Q + I   + G+++I    TG+GKT +      R ++          G   ++L     L
Sbjct  303  QAQAIPAIMSGRDVIGISKTGSGKTVSFILPLLRQIKAQRPLGGDETGPLGLILSPTREL  362

Query  60   VTQHGEEFRRMLDGRWTVTTL--SGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE  117
              Q  EE  +   G  ++ +L  +G    +     + R  +++I T       L+     
Sbjct  363  ALQIHEEVTKFTSGDPSIRSLCCTGGSELKRQINDIKRGVEIVIATPGRFIDLLSLNSGN  422

Query  118  EHVELTVFSLIVVDECHH  135
              +       +V+DE   
Sbjct  423  -LINPKRIVFVVMDEADR  439


>sp|Q9CWT6|DDX28_MOUSE Probable ATP-dependent RNA helicase DDX28 
OS=Mus musculus OX=10090 GN=Ddx28 PE=2 SV=2
Length=540

 Score = 90.2 bits (222),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 30/131 (23%), Positives = 49/131 (37%), Gaps = 17/131 (13%)

Query  350  KLEMLEKILQRQFSSSN---SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA  406
            K+  L +IL++Q  +S    S   ++F  +  + + L   L   +               
Sbjct  377  KVTELVQILKQQDKASKTEPSGTVLVFCNSASTVNWLGYILDDHK--------------I  422

Query  407  GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV  466
             +      M    +  + Q FQ G+ N+LV T +A  GLD  H  VV+ Y         +
Sbjct  423  QHLRLQGQMPASMRAGIFQSFQKGSQNILVCTDIASRGLDSVHVEVVINYDFPPTLQDYI  482

Query  467  QARGRARADQS  477
               GR     S
Sbjct  483  HRAGRVGRVGS  493


 Score = 53.3 bits (126),  Expect = 5e-06, Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 54/137 (39%), Gaps = 15/137 (11%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAY-VAKRHLETVDGA-------KVVVLVNRVH  58
            Q + I P L G++++    TG+GKT +    + +R L   D         + +VLV    
Sbjct  155  QSKTIPPLLRGRHLLCAAETGSGKTLSYLLPLFQRLLRGSDLDSRSFTAPRGLVLVPSRE  214

Query  59   LVTQ-HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARC--HDLLICTAELLQMALTSPE  115
            L  Q               V  L G +G       L R    D+L+ T   L  AL S  
Sbjct  215  LAEQVQAVAQSLGGYLGLQVIELGGGLGMSRLKLQLYRRPAADVLVATPGALWKALKS--  272

Query  116  EEEHVELTVFSLIVVDE  132
              + + L   + IV+DE
Sbjct  273  --QLISLQHLNFIVLDE  287


>sp|A6RSH5|DBP7_BOTFB ATP-dependent RNA helicase dbp7 OS=Botryotinia 
fuckeliana (strain B05.10) OX=332648 GN=dbp7 PE=3 SV=1
Length=877

 Score = 91.0 bits (224),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 84/549 (15%), Positives = 170/549 (31%), Gaps = 113/549 (21%)

Query  22   IWLPTGAGKTRAAAY----VAKRHLET------VDGAKVVVLVNRVHLVTQHGEEFRRML  71
            I   TG+GKT A             E         G   ++L     L  Q      ++L
Sbjct  299  IQAETGSGKTLAYLLPIVERILALSENGVQIHRDSGLFAIILSPTRELCKQIAAVLEKVL  358

Query  72   --DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIV  129
                    TT++G    ++    L +  ++L+ T   L   L + E    + +     +V
Sbjct  359  RCAPWIVGTTVNGGESKQSEKARLRKGVNILVATPGRLADHLDNTE---VLNVATVRWLV  415

Query  130  VDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLC  189
            +DE      D     +M    E +++         G+    G    +K +  +  + +  
Sbjct  416  LDE-----GD----RLMELGFEEEIK---------GIVEKIGRRSVAKANSDMGSLPK--  455

Query  190  ANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPEL  249
              +   C  + +    +L E S +            +    +   +  D         +L
Sbjct  456  RRVTILCSATMKMNVQRLGEISLKDAVHIQADPSEQEKQDKENGVEAQD--KAFSAPTQL  513

Query  250  SRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDF  309
             + +     + ++V L+          +R +A         + I       D++      
Sbjct  514  KQSYAIVPAKLRLVTLTALL-------KRAFARKGSVMKAIVFISCA----DSVDFHFSL  562

Query  310  YHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPR  369
            + R      +++  E+  L                 P  PK E++++ +    + SN+  
Sbjct  563  FSRTPEASAEVVDEEKVDL-----------------PALPKSELVKETIAHGTTISNNSN  605

Query  370  GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD  429
             +I              L +  G    +IR   L     S+    M              
Sbjct  606  PVI--------------LHKLHGSLAQNIRTATLKAFSESADPCVM--------------  637

Query  430  GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVA-----  483
                  + T VA  GLD+P+ + V+ Y    +    +   GR ARA +   A +      
Sbjct  638  ------ICTDVASRGLDLPNVDFVIEYDPPFSAEDHLHRVGRTARAGREGRALIFLMPGV  691

Query  484  --------TEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAA  535
                      G RE K+ L     E L+++    + +  +        ++++ +L     
Sbjct  692  EEEYVSILASGYREGKKALTRHTAEDLIQKGFGGIGREWEERATNFQLEVERWSLDSPKY  751

Query  536  QAAQRENQR  544
                R   +
Sbjct  752  LEMARRGYQ  760


>sp|Q818H2|CSHB_BACCR DEAD-box ATP-dependent RNA helicase CshB 
OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 
/ JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711) 
OX=226900 GN=cshB PE=2 SV=1
Length=436

 Score = 89.5 bits (220),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 72/186 (39%), Gaps = 25/186 (13%)

Query  305  ALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSS  364
             L+ F  +       I    +++ A        + H         K++++ K+L +    
Sbjct  194  KLKPFLKKYMENPEHIHINPKQVAAG------NIEHYLVPSKHRNKIDLVHKMLLQF---  244

Query  365  SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI  424
                  ++FT T++ A  +   L ++              G         ++ RD+++++
Sbjct  245  -KPYLAVVFTNTKKMADQVADGLMER--------------GLKVGRIHGDLSPRDRKKMM  289

Query  425  QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVA  483
            ++ +D     +VAT +A  G+DI   + V+ Y   ++    V    R ARA  S  A   
Sbjct  290  KQIRDLEFQYIVATDLAARGIDIQGISHVINYQPPSDLDFFVHRVARTARAGHSGIAVTI  349

Query  484  TEGSRE  489
             + + E
Sbjct  350  YDPANE  355


 Score = 51.7 bits (122),  Expect = 1e-05, Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 51/133 (38%), Gaps = 10/133 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLE-TVDGAKVVVLVNRVHLVTQHGE  65
            Q ++     +G ++I    TG+GKT A        +  + +  ++V+      L  Q  E
Sbjct  31   QQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLNRINASREEVQLVITAPTRELAQQIYE  90

Query  66   EFRRMLDGRWTVTTLS-----GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
            E  ++         ++     G    +     L +   +++ T   ++       EE+ +
Sbjct  91   EIVKLTKFCAEDQMITARCLIGGTDKQRSIEKLKKQPHIVVGTPGRIKD----LVEEQAL  146

Query  121  ELTVFSLIVVDEC  133
             +   + I+VDE 
Sbjct  147  FVHKANTIIVDEA  159


>sp|Q5T1V6|DDX59_HUMAN Probable ATP-dependent RNA helicase DDX59 
OS=Homo sapiens OX=9606 GN=DDX59 PE=1 SV=1
Length=619

 Score = 90.2 bits (222),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 72/180 (40%), Gaps = 20/180 (11%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K + L +IL         P  ++F   +  A  L   +Q+  GL+++ I           
Sbjct  429  KKKKLFEILND--KKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSISIH----------  476

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
               +  +Q +++ +++   +G   ++V+T V   GLD+    +VV + + ++    V   
Sbjct  477  ---SEKSQIERKNILKGLLEGDYEVVVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQI  533

Query  470  GR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQ  527
            GR  R  Q+  A       S+ L  ++      T    ++   Q ++      + R  QQ
Sbjct  534  GRVGRLGQNGTAITFINNNSKRLFWDIAKRVKPT---GSILPPQLLNSPYLHDQKRKEQQ  590


 Score = 61.0 bits (146),  Expect = 3e-08, Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 54/132 (41%), Gaps = 11/132 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT--RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ--  62
            Q ++I   L G++I+    TG+GKT       + +   E+   +  ++L     L  Q  
Sbjct  230  QMQMIPVGLLGRDILASADTGSGKTAAFLLPVIMRALFESKTPS-ALILTPTRELAIQIE  288

Query  63   -HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVE  121
               +E    L    TV  + G   P   +  L +   ++I T   L   +    ++  VE
Sbjct  289  RQAKELMSGLPRMKTVLLVGGLPLPPQLY-RLQQHVKVIIATPGRLLDII----KQSSVE  343

Query  122  LTVFSLIVVDEC  133
            L    ++VVDE 
Sbjct  344  LCGVKIVVVDEA  355


>sp|Q7SFC8|ROK1_NEUCR ATP-dependent RNA helicase rok1 OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / 
DSM 1257 / FGSC 987) OX=367110 GN=drh-16 PE=3 SV=1
Length=781

 Score = 90.6 bits (223),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 32/154 (21%), Positives = 63/154 (41%), Gaps = 14/154 (9%)

Query  350  KLEMLEKILQRQFSSSNSPRG----IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
            KL  L ++L    S+ + P      ++FT+T + A +L   L+    L+           
Sbjct  524  KLLALRQLLHPVSSADSGPPLRPPFLVFTQTIERAQALHDELKYDIPLEAGG-------S  576

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM  465
            A  +   + +    + +++ +F+ G + +L+ T V   G+D    N VV Y +  +  + 
Sbjct  577  ARVAVLHSSLPDSVRSKIMARFRSGEVWVLITTDVLARGVDFAGVNGVVNYDVPVSAAAY  636

Query  466  VQ---ARGRARADQSVYAFVATEGSRELKRELIN  496
            V      GRA  +  V     T+      + + N
Sbjct  637  VHRAGRTGRAGREGGVAVTFYTKDDIPFVKSVAN  670


>sp|Q761Z9|RH18_ORYSJ DEAD-box ATP-dependent RNA helicase 18 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os01g0164500 PE=1 
SV=2
Length=647

 Score = 90.2 bits (222),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 60/345 (17%), Positives = 119/345 (34%), Gaps = 50/345 (14%)

Query  153  KLQRAQPLPQ----VLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQ  208
            ++ R +P P     VLG+  SP    +S++             + +  ++   +   +L+
Sbjct  83   EILRRRPSPPKPHEVLGIIISPTRELSSQIYNVAQPFFATLKGVSSMLLVGGFDIKAELK  142

Query  209  EHSQQ--------PCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQ  260
            +  ++        P K +++  R     + +L   ++D+      + +L  +        
Sbjct  143  KLEEEGANILVGTPGKLFDVMERLDTLNYKNLEILILDE---ADRLLDLGFQKQITSIIS  199

Query  261  QVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQI  320
            ++ KL      +  Q + V  L                   A A L++    E  T+ + 
Sbjct  200  KLPKLRRTGLFSATQTEAVKEL-------------------AKAGLRNPVRVEVKTEVKP  240

Query  321  LCAERRLLALFDDRKNE-LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQS  379
               +     L   +    L         + K   L   L +    +N  + +++  T   
Sbjct  241  TGKDGAQQELGPSKTPLGLRLEYMICEASNKSSQLVDFLVQ----NNGKKIMVYFATCAC  296

Query  380  AHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATS  439
                 + L               L G+        M Q  +++ +  F   +  +LV T 
Sbjct  297  VDYWAIVLPLL----------DSLKGSPIIPYHGKMKQGPREKALASFSALSSGILVCTD  346

Query  440  VAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVA  483
            VA  GLDIPH +++V+Y    +    +   GR AR DQ   A V 
Sbjct  347  VAARGLDIPHVDLIVQYDPPQDPNVFIHRAGRTARYDQEGDAIVF  391


 Score = 44.8 bits (104),  Expect = 0.003, Method: Composition-based stats.
 Identities = 22/138 (16%), Positives = 44/138 (32%), Gaps = 12/138 (9%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA------KVVVLVNRVHLV  60
            Q   I   L  K++ +   TG+GKT A        L              +++     L 
Sbjct  50   QAAAIPLLLSHKDVAVDAATGSGKTLAFVVPVVEILRRRPSPPKPHEVLGIIISPTRELS  109

Query  61   TQHGEEFRRM---LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE  117
            +Q     +     L G  ++  + G               ++L+ T   L   +   +  
Sbjct  110  SQIYNVAQPFFATLKGVSSMLLVGGFDIKAELKKLEEEGANILVGTPGKLFDVMERLDTL  169

Query  118  EHVELTVFSLIVVDECHH  135
             +  L    ++++DE   
Sbjct  170  NYKNLE---ILILDEADR  184


>sp|Q63NE3|UVRB_BURPS UvrABC system protein B OS=Burkholderia 
pseudomallei (strain K96243) OX=272560 GN=uvrB PE=3 SV=1
Length=696

 Score = 90.2 bits (222),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 39/187 (21%), Positives = 74/187 (40%), Gaps = 20/187 (11%)

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R +I   T++ A  L  +L                 G       + +   ++ E+I+ 
Sbjct  465  NERVLITVLTKRMAEQLTEFLAD--------------HGVKVRYLHSDIDTVERVEIIRD  510

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + GT ++LV  ++  EGLDIP  ++V          L  E S++Q  GRA  + +  A 
Sbjct  511  LRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAARNVNGKAL  570

Query  482  VATEGSRELKRELINEALETLMEQ-AVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR  540
            +  +   +  R  I+E      +Q A      +       +I+D+         A+A  +
Sbjct  571  LYADRITDSMRRAIDETERRRAKQIAYNEKMGITPRGVVKRIKDIIDGVYNADEARAELK  630

Query  541  ENQRQQF  547
            E Q++  
Sbjct  631  EAQQRAK  637


 Score = 39.0 bits (89),  Expect = 0.18, Method: Composition-based stats.
 Identities = 13/66 (20%), Positives = 21/66 (32%), Gaps = 7/66 (11%)

Query  8    WEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEF  67
             E +   L  + ++    TG+GKT          +  +    +V       L  Q   EF
Sbjct  45   VEGVEDGLSFQTLLGV--TGSGKTYT----MANTIARLGRPAIVF-APNKTLAAQLYAEF  97

Query  68   RRMLDG  73
            R     
Sbjct  98   REFFPR  103


>sp|Q62CK6|UVRB_BURMA UvrABC system protein B OS=Burkholderia 
mallei (strain ATCC 23344) OX=243160 GN=uvrB PE=3 SV=1
Length=696

 Score = 90.2 bits (222),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 39/187 (21%), Positives = 74/187 (40%), Gaps = 20/187 (11%)

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R +I   T++ A  L  +L                 G       + +   ++ E+I+ 
Sbjct  465  NERVLITVLTKRMAEQLTEFLAD--------------HGVKVRYLHSDIDTVERVEIIRD  510

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + GT ++LV  ++  EGLDIP  ++V          L  E S++Q  GRA  + +  A 
Sbjct  511  LRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAARNVNGKAL  570

Query  482  VATEGSRELKRELINEALETLMEQ-AVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR  540
            +  +   +  R  I+E      +Q A      +       +I+D+         A+A  +
Sbjct  571  LYADRITDSMRRAIDETERRRAKQIAYNEKMGITPRGVVKRIKDIIDGVYNADEARAELK  630

Query  541  ENQRQQF  547
            E Q++  
Sbjct  631  EAQQRAK  637


 Score = 39.0 bits (89),  Expect = 0.18, Method: Composition-based stats.
 Identities = 13/66 (20%), Positives = 21/66 (32%), Gaps = 7/66 (11%)

Query  8    WEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEF  67
             E +   L  + ++    TG+GKT          +  +    +V       L  Q   EF
Sbjct  45   VEGVEDGLSFQTLLGV--TGSGKTYT----MANTIARLGRPAIVF-APNKTLAAQLYAEF  97

Query  68   RRMLDG  73
            R     
Sbjct  98   REFFPR  103


>sp|Q971U1|XPB1_SULTO DNA 3'-5' helicase/translocase StoXPB1 OS=Sulfurisphaera 
tokodaii (strain DSM 16993 / JCM 10545 / NBRC 
100140 / 7) OX=273063 GN=xpb1 PE=1 SV=1
Length=543

 Score = 89.9 bits (221),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 59/397 (15%), Positives = 122/397 (31%), Gaps = 57/397 (14%)

Query  2    ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVT  61
            ELR YQ E +   L+  + +I LPTGAGKT     +             +++      + 
Sbjct  158  ELRDYQKEAVDTWLQRGSGVIALPTGAGKTVIGIKIITEV-----RKSTLIVTFTKDQML  212

Query  62   QHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVE  121
            Q  +   +  D   +   L         +        + I T                  
Sbjct  213  QWRDAILKFTDANRSDIGL--------YYSEEKNIRPITITTYHTAY-------RHIDEL  257

Query  122  LTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGA  181
               F L+++DE HH   D        ++ E+ L+      + LGL+A+P        DG 
Sbjct  258  SGKFELLIIDEAHHLPAD--------RFKEIALK--CIASKRLGLSATPVRE-----DGK  302

Query  182  INHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIH  241
               + +L   L                 + + P +     +    +     +     +  
Sbjct  303  HEELFKLMGGLI----------------YFKTPQELIQKGYLAPFELIQIRVNLTSKEKL  346

Query  242  DHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDAL-LIHDTVRAV  300
             +  +    RK        ++++L +      ++  ++Y    +  N A   +      +
Sbjct  347  KYATLLSQFRKVAGGKKVSELIQLVKEGNSNAIEAMKIYNEMKKIVNLAENKLKALDDII  406

Query  301  DALAALQDFYHREHVTKTQILCAE--RRLLALFDDRKNELAHLATHGPENPKLEMLEKIL  358
                  +     ++V + + +  +    L+    ++      L         + +L  + 
Sbjct  407  QKENGNKILIFTQYVDQAEEIAKKYNAYLITGKTNKNEREKILRIFKTLKSGILVLTTVG  466

Query  359  QRQFSSSNSPRGIIFT---RTRQSAHSLLLWLQQQQG  392
                   ++  GII T     RQ    L   L+   G
Sbjct  467  DEGLDIPDANVGIIVTGTGSRRQFIQRLGRLLRPSNG  503


 Score = 68.7 bits (166),  Expect = 8e-11, Method: Composition-based stats.
 Identities = 51/285 (18%), Positives = 102/285 (36%), Gaps = 26/285 (9%)

Query  189  CANLDTWCIMSPQNCCPQLQEHSQQ-PCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMP  247
              N+    I +       + E S +      +  H    D F ++  K +      L   
Sbjct  236  EKNIRPITITTYHTAYRHIDELSGKFELLIIDEAHHLPADRFKEIALKCIASKRLGLSAT  295

Query  248  ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYA-LHLRRYNDALLIHDTVRAVDALAAL  306
             +      +   + +  L        L ++   A   L +    L   + ++    L+  
Sbjct  296  PVREDGKHEELFKLMGGLIYFKTPQELIQKGYLAPFELIQIRVNLTSKEKLKYATLLSQF  355

Query  307  QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSN  366
            +     + V++   L  E    A+   +         +  EN KL+ L+ I+Q++    N
Sbjct  356  RKVAGGKKVSELIQLVKEGNSNAIEAMKIYNEMKKIVNLAEN-KLKALDDIIQKE----N  410

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
              + +IFT+    A  +                A L+ G  N +        +++++++ 
Sbjct  411  GNKILIFTQYVDQAEEIAK-----------KYNAYLITGKTNKN--------EREKILRI  451

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
            F+     +LV T+V +EGLDIP  NV +      +    +Q  GR
Sbjct  452  FKTLKSGILVLTTVGDEGLDIPDANVGIIVTGTGSRRQFIQRLGR  496


>sp|A8EXS6|UVRB_RICCK UvrABC system protein B OS=Rickettsia canadensis 
(strain McKiel) OX=293613 GN=uvrB PE=3 SV=1
Length=661

 Score = 90.2 bits (222),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 38/203 (19%), Positives = 81/203 (40%), Gaps = 24/203 (12%)

Query  346  PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
            P   ++E L   +Q     +   R ++ T T++ A  L  +LQ+ +              
Sbjct  426  PATNQVEDLISEIQTT--IAKGLRVLVTTLTKKMAEDLTTYLQELK--------------  469

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLT  460
              +S   +++   ++ E+++  + GT+N+LV  ++  EGLDIP C +V          L 
Sbjct  470  YKSSYLHSNVHTLERLEILRDLRQGTINILVGINLLREGLDIPECGLVAILDADKEGFLR  529

Query  461  NEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA  520
            +E+S++Q  GRA  +      +  +   ++ + +     ET+  + +             
Sbjct  530  SEVSLIQTIGRAARNSEGRVILYAD---KITKSIDKAVSETMRRRQIQQEYNEKHGIIPQ  586

Query  521  KIRDLQQAALTKRAAQAAQRENQ  543
             I     A    +   +   + Q
Sbjct  587  TINRTIYALTALKKIDSKLDKKQ  609


>sp|Q9WTM2|DDX6_CAVPO Probable ATP-dependent RNA helicase DDX6 
(Fragment) OS=Cavia porcellus OX=10141 GN=DDX6 PE=2 SV=1
Length=472

 Score = 89.1 bits (219),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 49/325 (15%), Positives = 104/325 (32%), Gaps = 23/325 (7%)

Query  190  ANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPEL  249
             N+    I+  +    Q+ +   Q  K        +    G  L+  + ++ D + +   
Sbjct  152  DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMAT-TGGTNLRDDIMRLDDTVHVVIA  210

Query  250  SRKFGTQMYEQQVVKLSEAAALAGLQEQRVYAL-HLRRYNDALLIHDTVRAVDALAALQD  308
            +      + ++ V K+     +   +  ++ +   ++   D +L     R +   +A   
Sbjct  211  TPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFP  270

Query  309  FYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSP  368
               ++ +     L     +  + +     +     +  E  K+      L   F    + 
Sbjct  271  LSVQKFMN--SHLQKPYEINLMEELTLKGVTQYYAYVTERQKV----HCLNTLFPRLQTN  324

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            + IIF  + Q    L   + Q              +G         M Q  +  V   F+
Sbjct  325  QSIIFCNSSQRVELLAKKISQ--------------LGYSCFYIHAKMRQEHRNRVFHDFR  370

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGS  487
            +G    LV T +   G+DI   NVV+ +       + +   GR  R      A       
Sbjct  371  NGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYD  430

Query  488  RELKRELINEALETLMEQAVAAVQK  512
                 + I E L T ++   + + K
Sbjct  431  DRFNLKSIEEQLGTEIKPIPSNIDK  455


 Score = 47.5 bits (111),  Expect = 4e-04, Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 63/167 (38%), Gaps = 14/167 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLE-TVDGAKVVVLVNRVHL---VTQ  62
            Q E I  AL G++I+     G GK+ A        L+   D  + +V+V    L   V+Q
Sbjct  112  QEESIPIALTGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQ  171

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
               +  + + G   V   +G    R     L     ++I T   +   +    ++   ++
Sbjct  172  ICIQVSKHMGGA-KVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLI----KKGVAKV  226

Query  123  TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS  169
                +IV+DE         +  IM   +    +      Q+L  +A+
Sbjct  227  DHVQMIVLDEADKLLSQD-FVQIMEDIILTLPKNR----QILLYSAT  268


>sp|P54823|DDX6_MOUSE Probable ATP-dependent RNA helicase DDX6 
OS=Mus musculus OX=10090 GN=Ddx6 PE=1 SV=1
Length=483

 Score = 89.1 bits (219),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 50/325 (15%), Positives = 104/325 (32%), Gaps = 23/325 (7%)

Query  190  ANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPEL  249
             N+    I+  +    Q+ +   Q  K        +    G  L+  + ++ D + +   
Sbjct  163  DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMAT-TGGTNLRDDIMRLDDTVHVVIA  221

Query  250  SRKFGTQMYEQQVVKLSEAAALAGLQEQRVYAL-HLRRYNDALLIHDTVRAVDALAALQD  308
            +      + ++ V K+     +   +  ++ +   ++   D +L     R +   +A   
Sbjct  222  TPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFP  281

Query  309  FYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSP  368
               ++ +     L     +  + +     +     +  E  K+      L   FS     
Sbjct  282  LSVQKFMN--SHLQKPYEINLMEELTLKGVTQYYAYVTERQKV----HCLNTLFSRLQIN  335

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            + IIF  + Q    L   + Q              +G         M Q  +  V   F+
Sbjct  336  QSIIFCNSSQRVELLAKKISQ--------------LGYSCFYIHAKMRQEHRNRVFHDFR  381

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGS  487
            +G    LV T +   G+DI   NVV+ +       + +   GR  R      A       
Sbjct  382  NGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYD  441

Query  488  RELKRELINEALETLMEQAVAAVQK  512
                 + I E L T ++   + + K
Sbjct  442  DRFNLKSIEEQLGTEIKPIPSNIDK  466


 Score = 47.9 bits (112),  Expect = 3e-04, Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 63/167 (38%), Gaps = 14/167 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLE-TVDGAKVVVLVNRVHL---VTQ  62
            Q E I  AL G++I+     G GK+ A        L+   D  + +V+V    L   V+Q
Sbjct  123  QEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQ  182

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
               +  + + G   V   +G    R     L     ++I T   +   +    ++   ++
Sbjct  183  ICIQVSKHMGGA-KVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLI----KKGVAKV  237

Query  123  TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS  169
                +IV+DE         +  IM   +    +      Q+L  +A+
Sbjct  238  DHVQMIVLDEADKLLSQD-FVQIMEDIILTLPKNR----QILLYSAT  279


>sp|P21372|PRP5_YEAST Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Saccharomyces cerevisiae (strain ATCC 204508 
/ S288c) OX=559292 GN=PRP5 PE=1 SV=1
Length=849

 Score = 90.2 bits (222),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 47/363 (13%), Positives = 114/363 (31%), Gaps = 29/363 (8%)

Query  164  LGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHR  223
            +GL  +P    A ++   +    +   ++ + C         Q+    ++  +       
Sbjct  332  MGLILAPTRELALQIHEEVTKFTEADTSIRSVCCTGGSEMKKQI-TDLKRGTEIVVATPG  390

Query  224  RSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQE--QRVYA  281
            R  D       KL+        + + + +     +E Q+ ++ +              + 
Sbjct  391  RFIDILTLNDGKLLSTKRITFVVMDEADRLFDLGFEPQITQIMKTVRPDKQCVLFSATFP  450

Query  282  LHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHL  341
              LR +   +L       +++   + +   ++             L+ L  +R      +
Sbjct  451  NKLRSFAVRVLHSPISITINSKGMVNENVKQKFRICHSEDEKFDNLVQLIHERSEFFDEV  510

Query  342  ATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQ  401
             +               Q         + IIF  ++     +   L              
Sbjct  511  QSENDG-----------QSSDVEEVDAKAIIFVSSQNICDFISKKLLNA-----------  548

Query  402  LLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN  461
               G    +       +++   ++KF+    ++L+ T V   GL++P  ++V+ Y  +  
Sbjct  549  ---GIVTCAIHAGKPYQERLMNLEKFKREKNSILLCTEVLSRGLNVPEVSLVIIYNAVKT  605

Query  462  EISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA  520
                V   GR AR  +S  A             ++++A+     +A+  +Q  +  E  A
Sbjct  606  FAQYVHTTGRTARGSRSGTAITLLLHDELSGAYILSKAMRDEEIKALDPLQAKELQEMSA  665

Query  521  KIR  523
            K  
Sbjct  666  KFE  668


 Score = 50.6 bits (119),  Expect = 4e-05, Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 55/138 (40%), Gaps = 10/138 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLE-TVDGAK------VVVLVNRVHL  59
            Q + +   + G+++I    TG+GKT +      R ++     +K       ++L     L
Sbjct  283  QSQALPAIMSGRDVIGISKTGSGKTISYLLPLLRQVKAQRPLSKHETGPMGLILAPTREL  342

Query  60   VTQHGEEFRRMLDGRWTVTTL--SGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE  117
              Q  EE  +  +   ++ ++  +G    +     L R  ++++ T       LT  + +
Sbjct  343  ALQIHEEVTKFTEADTSIRSVCCTGGSEMKKQITDLKRGTEIVVATPGRFIDILTLNDGK  402

Query  118  EHVELTVFSLIVVDECHH  135
              +     + +V+DE   
Sbjct  403  -LLSTKRITFVVMDEADR  419


>sp|A6ZLH6|PRP5_YEAS7 Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Saccharomyces cerevisiae (strain YJM789) OX=307796 
GN=PRP5 PE=3 SV=1
Length=849

 Score = 90.2 bits (222),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 47/363 (13%), Positives = 114/363 (31%), Gaps = 29/363 (8%)

Query  164  LGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHR  223
            +GL  +P    A ++   +    +   ++ + C         Q+    ++  +       
Sbjct  332  MGLILAPTRELALQIHEEVTKFTEADTSIRSVCCTGGSEMKKQI-TDLKRGTEIVVATPG  390

Query  224  RSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQE--QRVYA  281
            R  D       KL+        + + + +     +E Q+ ++ +              + 
Sbjct  391  RFIDILTLNDGKLLSTKRITFVVMDEADRLFDLGFEPQITQIMKTVRPDKQCVLFSATFP  450

Query  282  LHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHL  341
              LR +   +L       +++   + +   ++             L+ L  +R      +
Sbjct  451  NKLRSFAVRVLHSPISITINSKGMVNENVKQKFRICHSEDEKFDNLVQLIHERSEFFDEV  510

Query  342  ATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQ  401
             +               Q         + IIF  ++     +   L              
Sbjct  511  QSENDG-----------QSSDVEEVDAKAIIFVSSQNICDFISKKLLNA-----------  548

Query  402  LLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN  461
               G    +       +++   ++KF+    ++L+ T V   GL++P  ++V+ Y  +  
Sbjct  549  ---GIVTCAIHAGKPYQERLMNLEKFKREKNSILLCTEVLSRGLNVPEVSLVIIYNAVKT  605

Query  462  EISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA  520
                V   GR AR  +S  A             ++++A+     +A+  +Q  +  E  A
Sbjct  606  FAQYVHTTGRTARGSRSGTAITLLLHDELSGAYILSKAMRDEEIKALDPLQAKELQEMSA  665

Query  521  KIR  523
            K  
Sbjct  666  KFE  668


 Score = 50.6 bits (119),  Expect = 4e-05, Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 55/138 (40%), Gaps = 10/138 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLE-TVDGAK------VVVLVNRVHL  59
            Q + +   + G+++I    TG+GKT +      R ++     +K       ++L     L
Sbjct  283  QSQALPAIMSGRDVIGISKTGSGKTISYLLPLLRQVKAQRPLSKHETGPMGLILAPTREL  342

Query  60   VTQHGEEFRRMLDGRWTVTTL--SGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE  117
              Q  EE  +  +   ++ ++  +G    +     L R  ++++ T       LT  + +
Sbjct  343  ALQIHEEVTKFTEADTSIRSVCCTGGSEMKKQITDLKRGTEIVVATPGRFIDILTLNDGK  402

Query  118  EHVELTVFSLIVVDECHH  135
              +     + +V+DE   
Sbjct  403  -LLSTKRITFVVMDEADR  419


>sp|Q0CMB0|ROK1_ASPTN ATP-dependent RNA helicase rok1 OS=Aspergillus 
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=rok1 
PE=3 SV=2
Length=749

 Score = 90.2 bits (222),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 56/315 (18%), Positives = 98/315 (31%), Gaps = 25/315 (8%)

Query  171  GTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFG  230
                    D     VL    + D+             +   + P  + ++       P  
Sbjct  324  VVERDGDGDSDEKDVLD-EDSADSGSDSEDDEQTTDKKTKGKAPVTKSDI---LVTTPLL  379

Query  231  DLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDA  290
             L+  L       L    L R       +  +  L     L   +      L       +
Sbjct  380  -LVNALSANRTKPLAALPLVRNIVLDEADVLLDPLFREQTLDIWRSCTHPEL-----RAS  433

Query  291  LLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH-LATHGPENP  349
            L        V+ LA       ++    T+     R ++ L D     + H L     E  
Sbjct  434  LWSATMGSNVEDLAKSTIQERKDLSGTTKSYPLIRLVVGLKDSAIPNIQHKLVYAATEQG  493

Query  350  KLEMLEKILQRQFSSSNS----PRGIIFTRTRQSAHSL-LLWLQQQQGLQTVDIRAQLLI  404
            KL  L ++L     ++      P  +IFT+T   A +L    L           R  +L 
Sbjct  494  KLLGLRQLLHPTARTATDVHLRPPFLIFTQTIPRAVALHSELLYDIPPEAGGSSRIAVL-  552

Query  405  GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
                    + ++   + E+++ F+ G + +LV T +   G+D    N VV Y +  +   
Sbjct  553  -------HSELSDSQRSEIMKGFRKGEIWILVTTDLLARGVDFRGINGVVNYDIPNSAAV  605

Query  465  MVQARGR-ARADQSV  478
             V   GR  RA +  
Sbjct  606  YVHRVGRTGRAGREG  620


 Score = 48.3 bits (113),  Expect = 2e-04, Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 53/157 (34%), Gaps = 43/157 (27%)

Query  20   IIIWLPTGAGKTR-----AAAYVAKRHLETVDGAKV--VVLVNRVHLVTQHGEEFRRMLD  72
            +++  PTG+GKT          + + H E  D   +  VV+     L +Q   E R+++ 
Sbjct  250  LLVVAPTGSGKTLSFLIPVINKIVRHHHEQPDERGIFAVVVAPTKELASQIVNEGRKLVQ  309

Query  73   GRWTVTTL-------------------------SGDMGPRAGFGHLARCH----------  97
            G     TL                         S D G  +                   
Sbjct  310  GTGVKITLMKKGMQVVERDGDGDSDEKDVLDEDSADSGSDSEDDEQTTDKKTKGKAPVTK  369

Query  98   -DLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC  133
             D+L+ T  LL  AL++   +    L +   IV+DE 
Sbjct  370  SDILVTTPLLLVNALSANRTKPLAALPLVRNIVLDEA  406


>sp|A3LZT3|DBP10_PICST ATP-dependent RNA helicase DBP10 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=DBP10 PE=3 SV=2
Length=931

 Score = 90.2 bits (222),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 52/314 (17%), Positives = 99/314 (32%), Gaps = 23/314 (7%)

Query  179  DGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNL---CHRRSQDPFGDLLKK  235
            D   +    + +N D       +    Q++        +Y +        +  F + L +
Sbjct  207  DSLEDQFSSMVSNPDIVIATPGRFLHLQVEMQLDLKTVEYIVFDEADHLFEQGFAEQLNE  266

Query  236  LMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHD  295
            L+  +    +    S      + +     LS    +    + ++       +        
Sbjct  267  LLAVLPPQRQSLLFSATLPRSLVDFAKAGLSNPVLVRLDADSKISDQLQMAFFTT---KK  323

Query  296  TVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLE  355
              R  + L  LQ+       T  QI   + RL+    + + E   L        K +  +
Sbjct  324  NEREANLLYVLQEVIKMPLGTAEQI--KKLRLMDKRVNDEAEEEELENESGSKRKYKFKK  381

Query  356  KILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHM  415
            + L       +    I+F  T+     +   L+                G   S     +
Sbjct  382  ERLPSANVLPSPHSTIVFVPTKHHVEYITTLLRDA--------------GYLVSYIYGTL  427

Query  416  TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA  474
             Q  ++  + +F+ G   +LV T VA  G+DIP    VV Y L  +    +   GR ARA
Sbjct  428  DQHARKNQLYQFRLGMTTVLVVTDVAARGIDIPVLANVVNYTLPGSSKIFIHRVGRTARA  487

Query  475  DQSVYAFVATEGSR  488
                +A+       
Sbjct  488  GNKGWAYSIVNEKE  501


 Score = 47.9 bits (112),  Expect = 3e-04, Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 39/114 (34%), Gaps = 8/114 (7%)

Query  26   TGAGKTRAAAYVAKRHLETVDGA---KVVVLVNRVHLVTQHGEEFRRMLDGRW-TVTTLS  81
            TG+GKT A        L+        + ++L     L  Q  ++ +    G       L+
Sbjct  145  TGSGKTAAFTLPVIEKLKGHSARVGIRAIILSPSRELALQTYKQVKEFSKGSDLRAIVLT  204

Query  82   GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH  135
            G       F  +    D++I T           + E  ++L     IV DE  H
Sbjct  205  GGDSLEDQFSSMVSNPDIVIATPGRFLH----LQVEMQLDLKTVEYIVFDEADH  254


>sp|A8GMJ1|UVRB_RICAH UvrABC system protein B OS=Rickettsia akari 
(strain Hartford) OX=293614 GN=uvrB PE=3 SV=1
Length=661

 Score = 89.9 bits (221),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 89/222 (40%), Gaps = 37/222 (17%)

Query  346  PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
            P   ++E L   +Q     +   R ++ T T++ A  L  +LQ+ +              
Sbjct  426  PATKQVEDLISEIQAT--VAKGLRVLVTTLTKKMAEDLTAYLQELK--------------  469

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLT  460
               S   +++   ++ E++Q  + GT+++LV  ++  EGLDIP C +V          L 
Sbjct  470  YKTSYLHSNVHTLERIEILQDLRQGTIDILVGINLLREGLDIPECGLVAILDADKEGFLR  529

Query  461  NEISMVQARGRARADQSVYAFVATEG---------SRELKRELINEA-------LETLME  504
            +E+S++Q  GRA  +      +  +          S  L+R  I +        +   + 
Sbjct  530  SEVSLIQTIGRAARNSEGRVILYADKMTKSIDKALSETLRRRQIQQEYNEKHGIIPKTIN  589

Query  505  QAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQ  546
            +A+ A+  +++ + +   +            +A   +  ++ 
Sbjct  590  RAIHALATLERVDSKCDTKQAHTLFDNTAKLKANINKLNKEM  631


>sp|Q5ZKB9|DDX6_CHICK Probable ATP-dependent RNA helicase DDX6 
OS=Gallus gallus OX=9031 GN=DDX6 PE=2 SV=1
Length=483

 Score = 89.1 bits (219),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 50/325 (15%), Positives = 104/325 (32%), Gaps = 23/325 (7%)

Query  190  ANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPEL  249
             N+    I+  +    Q+ +   Q  K        +    G  L+  + ++ D + +   
Sbjct  163  DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMAT-TGGTNLRDDIMRLDDTVHVVIA  221

Query  250  SRKFGTQMYEQQVVKLSEAAALAGLQEQRVYAL-HLRRYNDALLIHDTVRAVDALAALQD  308
            +      + ++ V K+     +   +  ++ +   ++   D +L     R +   +A   
Sbjct  222  TPGRILDLIKKGVAKVEHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFP  281

Query  309  FYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSP  368
               ++ +     L     +  + +     +     +  E  K+      L   FS     
Sbjct  282  LSVQKFMN--SHLQKPYEINLMEELTLKGVTQYYAYVTERQKV----HCLNTLFSRLQIN  335

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            + IIF  + Q    L   + Q              +G         M Q  +  V   F+
Sbjct  336  QSIIFCNSSQRVELLAKKISQ--------------LGYSCFYIHAKMRQEHRNRVFHDFR  381

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGS  487
            +G    LV T +   G+DI   NVV+ +       + +   GR  R      A       
Sbjct  382  NGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYD  441

Query  488  RELKRELINEALETLMEQAVAAVQK  512
                 + I E L T ++   + + K
Sbjct  442  DRFNLKSIEEQLGTEIKPIPSNIDK  466


 Score = 46.7 bits (109),  Expect = 6e-04, Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 63/167 (38%), Gaps = 14/167 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLE-TVDGAKVVVLVNRVHL---VTQ  62
            Q E I  AL G++I+     G GK+ A        L+   D  + +V+V    L   V+Q
Sbjct  123  QEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQ  182

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
               +  + + G   V   +G    R     L     ++I T   +   +    ++   ++
Sbjct  183  ICIQVSKHMGGA-KVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLI----KKGVAKV  237

Query  123  TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS  169
                +IV+DE         +  IM   +    +      Q+L  +A+
Sbjct  238  EHVQMIVLDEADKLLSQD-FVQIMEDIILTLPKNR----QILLYSAT  279


>sp|Q6CDN5|DBP6_YARLI ATP-dependent RNA helicase DBP6 OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DBP6 PE=3 
SV=1
Length=607

 Score = 89.5 bits (220),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 43/207 (21%), Positives = 84/207 (41%), Gaps = 24/207 (12%)

Query  333  DRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQG  392
                 L  + TH     K  ML ++L +     +  RG++FT++ ++A  +   +   + 
Sbjct  421  SIPKSLTEIVTHVSAAEKPLMLCELLVQ----RDINRGVVFTKSSETAARVARMM---EI  473

Query  393  LQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNV  452
            +          I    ++ S   +   ++  +++F DG ++ LV T +   G+D    + 
Sbjct  474  MDADIFHKDWKI----AAVSAETSSVHRRRSMKQFIDGKIDFLVCTDLVSRGIDF-VVDN  528

Query  453  VVRYGLLTNEISMVQARGR-ARADQSV--YAFVATEGSRELKRELINEALETLMEQAVAA  509
            V+ Y + + +   V   GR ARA +    Y F+   G  +  RE         + + V  
Sbjct  529  VINYDIPSGKREYVHRVGRTARAGREGNAYTFLTGSGEAKWFRE---------IGEFVGR  579

Query  510  VQKMDQAEYQAKIRDLQQAALTKRAAQ  536
             Q++D     +   D  Q AL K   +
Sbjct  580  TQEVDATHINSSHNDGYQEALAKLEEE  606


 Score = 52.5 bits (124),  Expect = 1e-05, Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 42/126 (33%), Gaps = 8/126 (6%)

Query  20   IIIWLPTGAGKTRAAAYVAKRHLE--TVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRW-T  76
            +++   TG+GKT          L    V   + VV++    LV Q  +    +  G   +
Sbjct  237  LLVSASTGSGKTATYGIPIIEKLRDRIVPRIRAVVVLPTKPLVMQVRDVLENLSKGSSLS  296

Query  77   VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHT  136
            V  L  D   +     +    D+++     L   +    E      +    +VVDE    
Sbjct  297  VVALRNDRSTKRER-AVLETADIVVAAPGRLVEQVKENPEL----FSYIEFLVVDEADRL  351

Query  137  HKDTVY  142
                 Y
Sbjct  352  LGQDYY  357


>sp|Q54CD8|DDX54_DICDI ATP-dependent RNA helicase ddx54 OS=Dictyostelium 
discoideum OX=44689 GN=helA PE=3 SV=1
Length=1091

 Score = 90.2 bits (222),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 24/127 (19%), Positives = 48/127 (38%), Gaps = 15/127 (12%)

Query  363  SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE  422
                    IIF  T+     + + L++               G  ++    ++    ++ 
Sbjct  493  QQQKKSSTIIFVSTKYHVEFIHILLERA--------------GIASTYIHGYLDPVARKI  538

Query  423  VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF  481
             + KF+   + ++V T +A  G+DIP  + V+ +     E   +   GR ARA +S  A+
Sbjct  539  NLAKFRSHQVGVMVVTDLAARGIDIPLLDNVINFDFPPKEKIFIHRVGRVARAGRSGIAY  598

Query  482  VATEGSR  488
                   
Sbjct  599  SLVSPDE  605


 Score = 51.3 bits (121),  Expect = 3e-05, Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 48/125 (38%), Gaps = 8/125 (6%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRHL---ETVDGAKVVVLVNRVHLVTQHGEEFRRML  71
            L+G +I+    TG+GKT A      + L    T  G + V+L     L  Q  +  +   
Sbjct  265  LDGHDIVGMARTGSGKTGAFVIPMIQKLGDHSTTVGVRAVILSPTRELAIQTFKVVKDFS  324

Query  72   DG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV  130
             G +     + G       F  LAR  D++I T   L   L     E  + L+    IV 
Sbjct  325  QGTQLRTILIVGGDSMEDQFTDLARNPDIIIATPGRLMHHLL----ETGMSLSKVQYIVF  380

Query  131  DECHH  135
            DE   
Sbjct  381  DEADR  385


>sp|Q9ZDW2|UVRB_RICPR UvrABC system protein B OS=Rickettsia prowazekii 
(strain Madrid E) OX=272947 GN=uvrB PE=3 SV=1
Length=662

 Score = 89.9 bits (221),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 88/222 (40%), Gaps = 37/222 (17%)

Query  346  PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
            P   ++E L   +Q     +   R ++ T T++ A  L  +LQ  Q              
Sbjct  426  PATNQVEDLISEIQTT--INTGLRILVTTLTKKMAEDLTSYLQDLQYKTY----------  473

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLT  460
                   +++   ++ E+++  + GT+++LV  ++  EG+DIP C +V          L 
Sbjct  474  ----YLHSNIHTLERIEILRNLRQGTIDILVGINLLREGIDIPECGLVAILDADKEGFLR  529

Query  461  NEISMVQARGRARADQSVYAFVATEG---------SRELKRELINEA-------LETLME  504
            +E S++Q  GRA  +      +  +          S  L+R  I +        +   + 
Sbjct  530  SETSLIQTIGRAARNSRGKVILYADKMTKSIDKAVSETLRRRQIQQEYNKKHGIIPKTIN  589

Query  505  QAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQ  546
            +A+ A++ +++       +    A L   A   A  +  +++
Sbjct  590  RAIHALESLEEIHDNKLDKKQANALLNNPAKLKAHMDKLKKE  631


>sp|Q6BL34|DBP10_DEBHA ATP-dependent RNA helicase DBP10 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 
/ JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DBP10 PE=3 
SV=2
Length=932

 Score = 90.2 bits (222),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 31/120 (26%), Positives = 47/120 (39%), Gaps = 15/120 (13%)

Query  370  GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD  429
             IIF  T+     +   L+                G   S     + Q  +++ + +F+ 
Sbjct  393  TIIFVPTKHHVEYVTTLLKDA--------------GYLVSYIYGTLDQHARKQQLYQFRI  438

Query  430  GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSR  488
            G  +LLV T VA  G+DIP    VV Y L  +    +   GR ARA  S +A+       
Sbjct  439  GMTSLLVVTDVAARGIDIPILANVVNYTLPGSSKIFIHRVGRTARAGNSGWAYSIVNEKE  498


 Score = 49.4 bits (116),  Expect = 1e-04, Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 42/116 (36%), Gaps = 12/116 (10%)

Query  26   TGAGKTRAAAYVAKRHLETVDGA---KVVVLVNRVHLVTQ---HGEEFRRMLDGRWTVTT  79
            TG+GKT A        L++       + ++L     L +Q     +EF +  D R  V  
Sbjct  143  TGSGKTAAFTLPLVEKLKSHSPRVGVRAIILSPSRELASQTFKQVKEFSKGTDLRSIV--  200

Query  80   LSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH  135
            L G       F  +    D+++ T           + E  +EL     IV DE   
Sbjct  201  LIGGDSLEEQFSSMMTNPDVIVATPGRFLH----LKVEMELELKTVEYIVFDEADR  252


>sp|P26196|DDX6_HUMAN Probable ATP-dependent RNA helicase DDX6 
OS=Homo sapiens OX=9606 GN=DDX6 PE=1 SV=2
Length=483

 Score = 88.7 bits (218),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 50/325 (15%), Positives = 104/325 (32%), Gaps = 23/325 (7%)

Query  190  ANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPEL  249
             N+    I+  +    Q+ +   Q  K        +    G  L+  + ++ D + +   
Sbjct  163  DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMAT-TGGTNLRDDIMRLDDTVHVVIA  221

Query  250  SRKFGTQMYEQQVVKLSEAAALAGLQEQRVYAL-HLRRYNDALLIHDTVRAVDALAALQD  308
            +      + ++ V K+     +   +  ++ +   ++   D +L     R +   +A   
Sbjct  222  TPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFP  281

Query  309  FYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSP  368
               ++ +     L     +  + +     +     +  E  K+      L   FS     
Sbjct  282  LSVQKFMN--SHLQKPYEINLMEELTLKGVTQYYAYVTERQKV----HCLNTLFSRLQIN  335

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            + IIF  + Q    L   + Q              +G         M Q  +  V   F+
Sbjct  336  QSIIFCNSSQRVELLAKKISQ--------------LGYSCFYIHAKMRQEHRNRVFHDFR  381

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGS  487
            +G    LV T +   G+DI   NVV+ +       + +   GR  R      A       
Sbjct  382  NGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYD  441

Query  488  RELKRELINEALETLMEQAVAAVQK  512
                 + I E L T ++   + + K
Sbjct  442  DRFNLKSIEEQLGTEIKPIPSNIDK  466


 Score = 47.5 bits (111),  Expect = 3e-04, Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 63/167 (38%), Gaps = 14/167 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLE-TVDGAKVVVLVNRVHL---VTQ  62
            Q E I  AL G++I+     G GK+ A        L+   D  + +V+V    L   V+Q
Sbjct  123  QEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQ  182

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
               +  + + G   V   +G    R     L     ++I T   +   +    ++   ++
Sbjct  183  ICIQVSKHMGGA-KVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLI----KKGVAKV  237

Query  123  TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS  169
                +IV+DE         +  IM   +    +      Q+L  +A+
Sbjct  238  DHVQMIVLDEADKLLSQD-FVQIMEDIILTLPKNR----QILLYSAT  279


>sp|Q4QJX4|UVRB_HAEI8 UvrABC system protein B OS=Haemophilus influenzae 
(strain 86-028NP) OX=281310 GN=uvrB PE=3 SV=1
Length=679

 Score = 89.5 bits (220),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 43/272 (16%), Positives = 98/272 (36%), Gaps = 26/272 (10%)

Query  337  ELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTV  396
             L  L    P + +++ L    ++   +  + R ++ T T++ A  L  +L +       
Sbjct  423  LLDPLIEIRPVSIQVDDLLSEARQ--RADKNERVLVTTLTKKMAEDLTDYLDE-------  473

Query  397  DIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY  456
                    G       + +   ++ E+I+  + G  ++LV  ++  EGLDIP  ++V   
Sbjct  474  -------HGIRVRYLHSDIDTVERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAIL  526

Query  457  G-----LLTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQ  511
                   L +E S++Q  GRA  + +  A +  +    + + +     ET   +      
Sbjct  527  DADKEGFLRSERSLIQTIGRAARNLNGKAILYAD---SITKSMEKAITETNRRREKQIKY  583

Query  512  KMDQAEY-QAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQLLCINCMVAVGHGSDLR  570
              +     QA  + + +     + A    + N+++         L      A  +   ++
Sbjct  584  NEEHGIVPQALNKKVGELLDIGQGANQKAKANKQRGKMAAEPTALYNAPKNAKEYQQQIK  643

Query  571  KVEGTHHVNVNP-NFSNYYNVSRDPVVINKVF  601
            K+E   +       F     +      + + F
Sbjct  644  KLEQQMYKFAQDLEFEKAAAIRDQLHQLREQF  675


>sp|A7TJK8|PRP5_VANPO Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Vanderwaltozyma polyspora (strain ATCC 22028 
/ DSM 70294 / BCRC 21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 
/ UCD 57-17) OX=436907 GN=PRP5 PE=3 SV=1
Length=872

 Score = 89.9 bits (221),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 49/376 (13%), Positives = 117/376 (31%), Gaps = 31/376 (8%)

Query  151  ELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEH  210
            +  L + +  P  LGL  +P    A +++  +    +   ++ T C         Q+   
Sbjct  342  QRTLSKNETGP--LGLILAPTRELALQINEEVEKFTKQDRSIRTICCTGGSEMKKQI-ND  398

Query  211  SQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAA  270
             ++  +       R  D       KL+        + + + +     +E Q+ ++ +   
Sbjct  399  LKRGVEIVVATPGRLIDILTLNSGKLISTKRITFVVMDEADRLFDMGFEPQITQIMKTVR  458

Query  271  LAGLQE--QRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLL  328
                       +   LR +   +L       +++   + +  ++    +        RL+
Sbjct  459  PDKQCVLFSATFPNKLRSFAARILTDPLTVTINSNNLVNENVNQSFYIEDNENDKFNRLV  518

Query  329  ALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQ  388
             + D       ++ ++  E           +      +  + IIF  ++Q    L   L+
Sbjct  519  NILDGFYKVNKNITSNSEE-----------REIDEEVSDKKIIIFVSSQQFCDLLYSKLE  567

Query  389  QQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIP  448
                                         +++   ++KF+  T ++L+ T V   GL++P
Sbjct  568  NFGYFPYT--------------IHAGKPYQERVMNLEKFKTTTNSILLCTEVLSRGLNVP  613

Query  449  HCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAV  507
              ++V+ Y         V   GR AR      A             ++  AL      ++
Sbjct  614  EVSLVIIYNAAKTFAQYVHTTGRTARGTHKGDAITLLLPDELAAAYILKRALRERELSSI  673

Query  508  AAVQKMDQAEYQAKIR  523
                  D  +   +  
Sbjct  674  DPQMVEDMKQMSERFE  689


 Score = 55.6 bits (132),  Expect = 1e-06, Method: Composition-based stats.
 Identities = 27/138 (20%), Positives = 53/138 (38%), Gaps = 10/138 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHL-------ETVDGAKVVVLVNRVHL  59
            Q + I   + G+++I    TG+GKT +      R +       +   G   ++L     L
Sbjct  304  QSQAIPAIMSGRDLIGISKTGSGKTISYILPMLRQIKAQRTLSKNETGPLGLILAPTREL  363

Query  60   VTQHGEEFRRMLDGRWTVTTL--SGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE  117
              Q  EE  +      ++ T+  +G    +     L R  ++++ T   L   LT    +
Sbjct  364  ALQINEEVEKFTKQDRSIRTICCTGGSEMKKQINDLKRGVEIVVATPGRLIDILTLNSGK  423

Query  118  EHVELTVFSLIVVDECHH  135
              +     + +V+DE   
Sbjct  424  -LISTKRITFVVMDEADR  440


>sp|A5DLR3|DBP10_PICGU ATP-dependent RNA helicase DBP10 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DBP10 PE=3 
SV=2
Length=914

 Score = 89.9 bits (221),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 46/125 (37%), Gaps = 15/125 (12%)

Query  365  SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI  424
             +    I+F  T+     +   L+                G   S     + Q  +++ +
Sbjct  386  PSEHSTIVFVPTKHHVEYVTTLLRDA--------------GHLVSYIYGTLDQHARKQQL  431

Query  425  QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVA  483
             +F+    N+LV T VA  G+DIP    VV Y L  +    +   GR ARA    +A+  
Sbjct  432  YQFRAAYTNILVVTDVAARGIDIPVLANVVNYTLPGSSKIFIHRVGRTARAGNKGWAYSI  491

Query  484  TEGSR  488
                 
Sbjct  492  VNEKE  496


 Score = 49.4 bits (116),  Expect = 1e-04, Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 42/116 (36%), Gaps = 12/116 (10%)

Query  26   TGAGKTRAAAYVAKRHLETVDGA---KVVVLVNRVHLVTQ---HGEEFRRMLDGRWTVTT  79
            TG+GKT A        L++       + V+L     L  Q     +EF +  D R  V  
Sbjct  145  TGSGKTAAFVLPVVEKLKSHSPKVGVRAVILSPSRELALQTFKQVKEFTKGTDLRSIV--  202

Query  80   LSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH  135
            L G       F  +    D+L+ T           + E +++L     IV DE   
Sbjct  203  LIGGDSLEDQFSSMMTNPDILVATPGRFLH----LKVEMNLDLKTVEYIVFDEADR  254


>sp|P54824|DDX6_XENLA ATP-dependent RNA helicase ddx6 OS=Xenopus 
laevis OX=8355 GN=ddx6 PE=1 SV=2
Length=481

 Score = 88.7 bits (218),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 33/158 (21%), Positives = 52/158 (33%), Gaps = 15/158 (9%)

Query  356  KILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHM  415
              L   FS     + IIF  + Q    L   + Q              +G         M
Sbjct  322  HCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQ--------------LGYSCFYIHAKM  367

Query  416  TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA  474
             Q  +  V   F++G    LV T +   G+DI   NVV+ +       + +   GR  R 
Sbjct  368  RQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRF  427

Query  475  DQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQK  512
                 A            + I E L T ++   +++ K
Sbjct  428  GHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSSIDK  465


 Score = 47.9 bits (112),  Expect = 3e-04, Method: Composition-based stats.
 Identities = 33/167 (20%), Positives = 62/167 (37%), Gaps = 14/167 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHL---VTQ  62
            Q E I  AL G++I+     G GK+ A        L+      + +V+V    L   V+Q
Sbjct  122  QEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDCIQAMVIVPTRELALQVSQ  181

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
               +  + + G   V   +G    R     L     ++I T   +   +    ++   ++
Sbjct  182  ICIQVSKHMGGA-KVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLI----KKGVAKV  236

Query  123  TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS  169
                +IV+DE         +  IM   +    +      Q+L  +A+
Sbjct  237  DHIQMIVLDEADKLLSQD-FMQIMEDIIMTLPKNR----QILLYSAT  278


>sp|Q8K4L0|DDX54_MOUSE ATP-dependent RNA helicase DDX54 OS=Mus 
musculus OX=10090 GN=Ddx54 PE=1 SV=1
Length=874

 Score = 89.9 bits (221),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 32/136 (24%), Positives = 54/136 (40%), Gaps = 17/136 (13%)

Query  347  ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA  406
            E+ K  +L  +LQ      +  + ++F  T+  A  L   L  Q              G 
Sbjct  319  EDTKAAVLLYLLQNVVRPQD--QTVVFVATKHHAEYLTELLMGQ--------------GV  362

Query  407  GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV  466
              +   + + Q  ++  + KF     + L+ T +A  GLDIP  + V+ Y         +
Sbjct  363  SCAHIYSALDQTARKINLAKFTHNKCSTLIVTDLAARGLDIPLLDNVINYSFPAKGKLFL  422

Query  467  QARGR-ARADQSVYAF  481
               GR ARA +S  A+
Sbjct  423  HRVGRVARAGRSGTAY  438


 Score = 50.2 bits (118),  Expect = 6e-05, Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 47/127 (37%), Gaps = 12/127 (9%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVD---GAKVVVLVNRVHLVTQHG---EEFR  68
            L+GK+++    TG+GKT          L+      GA+ ++L     L  Q     +E  
Sbjct  130  LDGKDVVAMARTGSGKTACFLLPMFERLKARSAQTGARALILSPTRELALQTMKFTKELG  189

Query  69   RMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLI  128
            +    +  +      M  +  F  L    D++I T   L         E +++L     +
Sbjct  190  KFTGLKTALILGGDKMEDQ--FAALHENPDIIIATPGRLVHV----AVEMNLKLQSVEYV  243

Query  129  VVDECHH  135
            V DE   
Sbjct  244  VFDEADR  250


>sp|P0CQ83|DBP4_CRYNB ATP-dependent RNA helicase DBP4 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=DBP4 PE=3 SV=1
Length=859

 Score = 89.9 bits (221),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 44/244 (18%), Positives = 81/244 (33%), Gaps = 40/244 (16%)

Query  288  NDALLIHDTVRAVDA--LAALQDFYHREHVTKTQILCAERRLLALFDDRKNE----LAHL  341
               L++ +  R +D   L AL+         +T       R   LF   +++    LA L
Sbjct  207  VKVLVLDEADRLLDLGFLPALKAIVSHFSPVQTAPGSRPSRQTLLFSATQSKDLAALAKL  266

Query  342  ATHGPEN----------------------PKLEMLEKILQRQFSSSNSPRGIIFTRTRQS  379
            + + P                          LE     L     S    +GI+F  + + 
Sbjct  267  SLYEPLYISCNKPGEEGVMPANLEQYYAVVPLERKLDALWGFVKSHLKMKGIVFVTSGKQ  326

Query  380  AHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATS  439
            A  +  ++ +        +    L G           Q  + ++ Q+F      LL+ T 
Sbjct  327  ARRV-RFIFETFRRLHPGLPLMHLHG--------KQKQPTRLDIFQRFSSSKSALLICTD  377

Query  440  VAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR--ADQSVYAFVATEGSRELKRELIN  496
            VA  GLD P  + V++     +  + +   GR AR  +  +    +       +K     
Sbjct  378  VAARGLDFPAVDWVIQLDCPDDVDTYIHRVGRTARYQSAGTALTILCPSEEEGMKTRWGE  437

Query  497  EALE  500
            +A+E
Sbjct  438  KAIE  441


 Score = 49.8 bits (117),  Expect = 9e-05, Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 47/135 (35%), Gaps = 10/135 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAY------VAKRHLETVDGAKVVVLVNRVHLV  60
            Q   I PAL+ ++I+    TG+GKT  A        +       +DG   VV+     L 
Sbjct  87   QSLAIPPALQARDILGSAKTGSGKTL-AFLIPLLERLYLEKWGPMDGLGAVVISPTRELA  145

Query  61   TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
             Q   + R +         L     P           ++LI T   L   L S       
Sbjct  146  VQTFMQLRDIGKYHNFSAGLVIGGKPLKEEQERLGRMNILIATPGRLLQHLDSTVG---F  202

Query  121  ELTVFSLIVVDECHH  135
            + +   ++V+DE   
Sbjct  203  DSSAVKVLVLDEADR  217


>sp|Q0IHV9|DDX6_XENTR Probable ATP-dependent RNA helicase ddx6 
OS=Xenopus tropicalis OX=8364 GN=ddx6 PE=2 SV=1
Length=481

 Score = 88.7 bits (218),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 33/158 (21%), Positives = 52/158 (33%), Gaps = 15/158 (9%)

Query  356  KILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHM  415
              L   FS     + IIF  + Q    L   + Q              +G         M
Sbjct  322  HCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQ--------------LGYSCFYIHAKM  367

Query  416  TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA  474
             Q  +  V   F++G    LV T +   G+DI   NVV+ +       + +   GR  R 
Sbjct  368  RQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRF  427

Query  475  DQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQK  512
                 A            + I E L T ++   +++ K
Sbjct  428  GHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSSIDK  465


 Score = 47.5 bits (111),  Expect = 4e-04, Method: Composition-based stats.
 Identities = 33/167 (20%), Positives = 62/167 (37%), Gaps = 14/167 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHL---VTQ  62
            Q E I  AL G++I+     G GK+ A        L+      + +V+V    L   V+Q
Sbjct  122  QEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDCIQAMVIVPTRELALQVSQ  181

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
               +  + + G   V   +G    R     L     ++I T   +   +    ++   ++
Sbjct  182  ICIQVSKHMGG-VKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLI----KKGVAKV  236

Query  123  TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS  169
                +IV+DE         +  IM   +    +      Q+L  +A+
Sbjct  237  DHIQMIVLDEADKLLSQD-FVQIMEDIIITLPKNR----QILLYSAT  278


>sp|Q6D3C4|UVRB_PECAS UvrABC system protein B OS=Pectobacterium 
atrosepticum (strain SCRI 1043 / ATCC BAA-672) OX=218491 GN=uvrB 
PE=3 SV=1
Length=670

 Score = 89.5 bits (220),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 51/304 (17%), Positives = 114/304 (38%), Gaps = 34/304 (11%)

Query  307  QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSN  366
            Q  Y     +  ++  +   ++         L  +    P   +++ L   ++    ++ 
Sbjct  388  QTIYVSATPSHYELEKSGGDVIDQVVRPTGLLDPIIEVRPVGTQVDDLLSEIR--LRAAI  445

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R ++ T T++ A  L  +LQ+               G       + +   ++ E+I+ 
Sbjct  446  NERVLVTTLTKRMAEDLTEYLQE--------------HGERVRYLHSDIDTVERVEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  +    A 
Sbjct  492  LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLRGKAI  551

Query  482  VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR  540
            +  +  +  + + +         ++A      +       KI D+ Q  L + A +   R
Sbjct  552  LYGDRITASMAKAISETERRREKQEAYNTEHGIVPQGINKKISDILQ--LGQSANKGKGR  609

Query  541  ENQRQQFPVEHVQLLCINCMVAVGHGSDLRKVEG---THHVNVNPNFSNYYNVSRDPVVI  597
             N++   P    +L+    +        +R++E    TH  N+   F     +  +  V+
Sbjct  610  GNRKAAEPAARYELMTPKALELK-----IRELESKMLTHAQNL--EFEEAAALRDEVQVL  662

Query  598  NKVF  601
               F
Sbjct  663  RAQF  666


>sp|A5DK47|DBP6_PICGU ATP-dependent RNA helicase DBP6 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DBP6 PE=3 
SV=2
Length=631

 Score = 89.5 bits (220),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 40/191 (21%), Positives = 81/191 (42%), Gaps = 18/191 (9%)

Query  348  NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG  407
            + K  +L K L  +    N    ++F ++ +++  L   LQ    +  +D+    L    
Sbjct  448  SAKPLVLAKFLMSEQKLVN---TLVFAKSNEASLRLCRLLQLLFRVFGLDVTVSYLNSTN  504

Query  408  NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
            N++ +       + ++++ F + T+++LV T +   G+DI     V+ Y L  +    V 
Sbjct  505  NAAST-------RAKILKDFANQTVHILVVTDLIARGIDIATITNVINYDLPNSSRDYVH  557

Query  468  ARGR-ARADQSVYAFVATEGSRELKREL-------INEALETLMEQAVAAVQKMDQAEYQ  519
              GR ARA+Q   A+    G  E K              ++ + +     V + D+A+Y 
Sbjct  558  RVGRTARANQDGEAYTMCFGKGETKWFTQLVREVSRQTEVKDVEKGFRDLVSREDEAKYD  617

Query  520  AKIRDLQQAAL  530
              + +LQ+   
Sbjct  618  TCLEELQRQVF  628


 Score = 65.2 bits (157),  Expect = 1e-09, Method: Composition-based stats.
 Identities = 28/119 (24%), Positives = 47/119 (39%), Gaps = 7/119 (6%)

Query  20   IIIWLPTGAGKTRAAAYVAKRHLET--VDGAKVVVLVNRVHLVTQHGEEFRRMLDGRW-T  76
            +++   TG+GKT   A      L    V   + +VLV    L++Q    F  +      +
Sbjct  242  LLVNAATGSGKTLGYAIPIIESLRNRIVPRVRAIVLVPTKPLISQVKATFAMLSKNTNLS  301

Query  77   VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH  135
            V +L  D+        L    D+++ T   L   LT+     H+ L     +V+DE   
Sbjct  302  VVSLRSDISINDEAQRLQVVPDIIVSTPGRLVEHLTN----GHINLKSLRYLVIDEADR  356


>sp|Q1E306|ROK1_COCIM ATP-dependent RNA helicase ROK1 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=ROK1 PE=3 SV=1
Length=730

 Score = 89.5 bits (220),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 45/228 (20%), Positives = 85/228 (37%), Gaps = 35/228 (15%)

Query  347  ENPKLEMLEKILQRQFSSSNS----PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL  402
            E  KL  L ++L    +SS++    P  +IFT+T   A +L   L         DI A+ 
Sbjct  476  EQGKLLGLRQLLHPTSTSSSTTHLRPPFLIFTQTIARAIALHSELM-------YDIPAEA  528

Query  403  LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE  462
               +  +   + ++   + +V+  F+ G + +L+ T +   G+D    N VV Y +  + 
Sbjct  529  GGSSRIAVLHSELSDSKRSDVMAGFRKGEIWVLITTDLLARGVDFRGINGVVNYDIPNSS  588

Query  463  ISMVQARGR----ARADQSVYAFVATEG-------------SRELKRELINEALETLMEQ  505
             S V   GR     R       F   E              S  L+     E +   +  
Sbjct  589  ASYVHRVGRTGRAGREGGVAVTFYTKEDIPYVKNIANVISASENLRGTEEGERIPKWLLD  648

Query  506  AVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQ  553
            A+ ++ K D+       +DL++  +  R       +   ++  +    
Sbjct  649  ALPSLSKNDK-------KDLKKYGVKARRPSTISDKTTSKKTRISTKS  689


 Score = 58.3 bits (139),  Expect = 2e-07, Method: Composition-based stats.
 Identities = 29/155 (19%), Positives = 51/155 (33%), Gaps = 41/155 (26%)

Query  20   IIIWLPTGAGKTR---AAA--YVAKRHLETVDGAKV--VVLVNRVHLVTQHGEEFRRMLD  72
            +++  PTG+GKT          + K H +     ++  +V+     LV Q   E R++  
Sbjct  237  LLVVAPTGSGKTLSFMIPLINKIMKHHHDNPGLKEILAIVVAPTKELVAQIVNEGRKLTA  296

Query  73   G----------------------RWTVTTLSGDMGPRAGFGHL------------ARCHD  98
            G                      R       GD    +    +                D
Sbjct  297  GTGVKVSAVRKGMRIVEERGQETRSLEEENDGDDSTASSDEEIHSSEGEKSKDIPLTKSD  356

Query  99   LLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC  133
            +L+CT  +L  AL+   + +   L     +V+DE 
Sbjct  357  ILVCTPLVLANALSDGGKRDVAPLPSVQKLVLDEA  391


>sp|Q9FFQ1|RH31_ARATH DEAD-box ATP-dependent RNA helicase 31 OS=Arabidopsis 
thaliana OX=3702 GN=RH31 PE=2 SV=2
Length=716

 Score = 89.5 bits (220),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 49/333 (15%), Positives = 105/333 (32%), Gaps = 37/333 (11%)

Query  145  IMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCC  204
            I               P +L L   P    A++     N +L+   ++    ++      
Sbjct  307  IEVVVKSPPTSPDNKRPPILALVICPTRELANQAATEANTLLKYHPSIGVQVVIGGTRLG  366

Query  205  PQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVK  264
             + +     PC+       R +D   +            +++  L       + +    K
Sbjct  367  LEQKRMQTNPCQILVATPGRLKDHIENT--PGFATRLKGVKVLVLDE--ADHLLDMGFRK  422

Query  265  LSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAE  324
              E    A  +E++ +         +  + + VR +  +A  +D      V +  I   +
Sbjct  423  DIERIISAVPKERQTFLF-------SATVPEEVRQICLVALRRDHEFVNCVHEGTIETHQ  475

Query  325  RRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLL  384
            +          + +A L  H        +L  +L+     +   + I+F  T      L+
Sbjct  476  QVRQM------HMIASLDRH------FSLLYTLLREHIMGNVDYKVIVFC-TTAMVTKLV  522

Query  385  LWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEG  444
              L  +  L   +I              +   Q  +  V  +F+     +LV + V+  G
Sbjct  523  ADLLGELNLNVREIH-------------SRKPQSYRTRVSNEFRKSKGLILVTSDVSARG  569

Query  445  LDIPHCNVVVRYGLLTNEISMVQARGRARADQS  477
            +D P   +V++ GL  +    +   GR      
Sbjct  570  VDYPDVTLVLQVGLPKDREQYIHRLGRTGRKGK  602


 Score = 45.9 bits (107),  Expect = 0.001, Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 47/134 (35%), Gaps = 15/134 (11%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYV------AKRHLETVDGAK----VVVLVNRVHLVTQHG  64
            L+GK+++    TG GKT  A  +       K    + D  +     +V+     L  Q  
Sbjct  283  LKGKDVLAKAKTGTGKT-VAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQAA  341

Query  65   EEFRRMLDGRWTVTTLSGDMGPRAGFGH---LARCHDLLICTAELLQMALTSPEEEEHVE  121
             E   +L    ++       G R G            +L+ T   L+  + +        
Sbjct  342  TEANTLLKYHPSIGVQVVIGGTRLGLEQKRMQTNPCQILVATPGRLKDHIENTPGFA-TR  400

Query  122  LTVFSLIVVDECHH  135
            L    ++V+DE  H
Sbjct  401  LKGVKVLVLDEADH  414


>sp|Q0E2Z7|RH41_ORYSJ DEAD-box ATP-dependent RNA helicase 41 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os02g0201900 PE=2 
SV=2
Length=536

 Score = 88.7 bits (218),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 49/267 (18%), Positives = 96/267 (36%), Gaps = 37/267 (14%)

Query  254  GTQMYEQQVVKLSEAAALAGLQEQRVYALHLR-----RYNDALLIHDTVRAVDALAALQD  308
            G     QQ+ ++     L      R+  L ++        D  ++ +    ++     Q 
Sbjct  248  GGDPLAQQIYRIENGIELIVGTPGRLIDLLMKHNVDLNKVDVFVLDEVDCLLERGFRDQV  307

Query  309  FYHREHVTKTQILCAERRLLALFDDRKNELAHLATH--------GPENPKL--------E  352
                + ++  Q++     + +  +   N LA  A H          ++ K         +
Sbjct  308  MQIFQALSHPQVMMFSATVNSEVEKMSNSLAKNAIHISCGNPSRPNKSVKQVVIWVESKQ  367

Query  353  MLEKILQRQFSSSN-SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ  411
              +KI +   S  +  P  ++F  +R  A  L   +    GL+ V I             
Sbjct  368  KKQKIFEIMTSKQHFKPPAVVFVSSRIGADLLSEAITVATGLKVVSIHG-----------  416

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
                T  +++E +++F  G ++++V T V   G+D+     V+ + +  +    V   GR
Sbjct  417  --DKTMNERRESLRRFLTGEVSVVVCTGVLGRGMDLLKVRQVILFDMPNSIDEYVHQVGR  474

Query  472  A-RADQSVYAF-VATEGSRELKRELIN  496
            A R      A     E  R L REL+ 
Sbjct  475  ASRMGVEGMAIVFVNEEDRNLFRELVQ  501


 Score = 56.3 bits (134),  Expect = 6e-07, Method: Composition-based stats.
 Identities = 30/193 (16%), Positives = 68/193 (35%), Gaps = 23/193 (12%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK--------VVVLVNRVH  58
            Q +VI  ++  +++++   TG+GKT +       H   V   +         +VL     
Sbjct  164  QMQVIPSSICNRSLLVSADTGSGKTASFLVPIIAHCSHVRSERCTDKQGPLAIVLAPTRE  223

Query  59   LVTQ---HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE  115
            L  Q     +   + L  +  +      +  +          +L++ T   L   L    
Sbjct  224  LCLQVEEQAKVLGKGLPFKTALVVGGDPLAQQIYRIE--NGIELIVGTPGRLIDLLMKH-  280

Query  116  EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGA  175
               +V+L    + V+DE     +    + +M  +      +A   PQV+  +A+  +   
Sbjct  281  ---NVDLNKVDVFVLDEVDCLLERGFRDQVMQIF------QALSHPQVMMFSATVNSEVE  331

Query  176  SKLDGAINHVLQL  188
               +    + + +
Sbjct  332  KMSNSLAKNAIHI  344


>sp|Q465R3|HELS_METBF ATP-dependent DNA helicase Hel308 OS=Methanosarcina 
barkeri (strain Fusaro / DSM 804) OX=269797 GN=hel308 
PE=3 SV=1
Length=729

 Score = 89.5 bits (220),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 45/176 (26%), Positives = 75/176 (43%), Gaps = 12/176 (7%)

Query  1    MELRSYQWEVIMPAL-EGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHL  59
            MEL   Q E +   L EG+N++  +PT +GKT  A     + +  + G K + +V    L
Sbjct  22   MELYPPQAEAVEKGLLEGRNLLAAIPTASGKTLLAELAMLKSI--LAGGKALYIVPLRAL  79

Query  60   VTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
             ++    FR   +    V   +GD   R         +D+++ T+E     L      E 
Sbjct  80   ASEKFRRFREFSELGIRVGISTGDYDLR---DEGLGVNDIIVATSEKTDSLL----RNET  132

Query  120  VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGA  175
            V +   S++V DE H    D+       +    KL++  P  Q+L L+A+ G    
Sbjct  133  VWMQEISVVVADEVHLI--DSPDRGPTLEVTLAKLRKMNPSCQILALSATVGNADE  186


 Score = 42.9 bits (99),  Expect = 0.009, Method: Composition-based stats.
 Identities = 31/167 (19%), Positives = 61/167 (37%), Gaps = 25/167 (15%)

Query  333  DRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQG  392
            DR+  +         N  L+ L+K  Q     S+    + F   +++A ++   L  +  
Sbjct  219  DREKTVEQSTKDEAVNLALDTLKKDGQCLVFESSRKNCMAFA--KKAASTVKKTLSAEDR  276

Query  393  LQTVDIRAQLL--------------IGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT  438
                 I  ++L              I +G +     +T   ++ V   F+ G + L+ +T
Sbjct  277  NALAGIADEILENSETDTSTNLAVCIRSGTAFHHAGLTTPLRELVEDGFRAGRIKLISST  336

Query  439  SVAEEGLDIPHCNVVV-RYGLLTNEI--------SMVQARGRARADQ  476
                 GL++P   V++  Y   ++E            Q  GRA   +
Sbjct  337  PTLAAGLNLPARRVIIRNYRRYSSEDGMQPIPVLEYKQMAGRAGRPR  383


>sp|A7TJT7|SUB22_VANPO ATP-dependent RNA helicase SUB2-2 OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 
21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=SUB2-2 PE=3 SV=1
Length=442

 Score = 87.9 bits (216),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 61/404 (15%), Positives = 122/404 (30%), Gaps = 51/404 (13%)

Query  129  VVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQV---LGLTASPGTGGASKLDGAINHV  185
            ++D       +   + +    +   +     L Q    LG TA        +LD     V
Sbjct  73   IID----CGFEHP-SEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEV  127

Query  186  LQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLE  245
              +            +N   +  ++     K              +LLK      H  + 
Sbjct  128  SVVVICNARELAYQIRNEYLRFSKYMP-DVKTAVFYGGTPITKDAELLKNKETAPHIVVA  186

Query  246  MPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAA  305
             P   +          ++ LS        +  +V      R +   +   T R    +  
Sbjct  187  TPGRLKALVRDK----LIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVM--  240

Query  306  LQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG--------PENPKLEMLEKI  357
                     +++       R L    +   ++ A L  HG         EN K   L ++
Sbjct  241  ----MFSATLSEEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLQENEKNRKLAQL  296

Query  358  LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ  417
            L          + IIF ++ + A+ L   L +                        +M Q
Sbjct  297  LDDL----EFNQVIIFVKSTKRANELTKLLNESNFPAIT--------------VHGNMKQ  338

Query  418  RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQS  477
             ++    + F++    + V+T V   G+DI   N+ + Y L T     +   GRA    +
Sbjct  339  AERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDLTTEADQYLHRVGRAGRFGT  398

Query  478  ---VYAFVATEGSRELK---RELINEALETLMEQAVAAVQKMDQ  515
                 +FV++    E+    +E  +  +    E+ +     ++ 
Sbjct  399  KGLAISFVSSPEDEEVLGKIQERFDVKIAEFPEEGIDPSTYLNN  442


 Score = 47.5 bits (111),  Expect = 3e-04, Method: Composition-based stats.
 Identities = 28/135 (21%), Positives = 52/135 (39%), Gaps = 14/135 (10%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQ---  62
            Q   I  ++ G +++    +G GKT        + L+ V G   VVV+ N   L  Q   
Sbjct  85   QQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVSVVVICNARELAYQIRN  144

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHD----LLICTAELLQMALTSPEEEE  118
                F + +    T     G   P      L +  +    +++ T   L+    +   ++
Sbjct  145  EYLRFSKYMPDVKTAVFYGG--TPITKDAELLKNKETAPHIVVATPGRLK----ALVRDK  198

Query  119  HVELTVFSLIVVDEC  133
             ++L+     V+DEC
Sbjct  199  LIDLSHVKNFVIDEC  213


>sp|Q1C942|UVRB_YERPA UvrABC system protein B OS=Yersinia pestis 
bv. Antiqua (strain Antiqua) OX=360102 GN=uvrB PE=3 SV=1
Length=671

 Score = 89.1 bits (219),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 42/254 (17%), Positives = 97/254 (38%), Gaps = 22/254 (9%)

Query  307  QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSN  366
            Q  Y      K ++  +   ++         L  L    P   +++ L   ++    ++ 
Sbjct  388  QTIYVSATPGKYELEKSGGDIIEQVVRPTGLLDPLIEVRPVATQVDDLLSEIR--IRAAI  445

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R ++ T T++ A  L  +L +               GA      + +   ++ E+I+ 
Sbjct  446  NERVLVTTLTKRMAEDLTDYLSE--------------HGAKVRYLHSDIDTVERVEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  + +  A 
Sbjct  492  LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAI  551

Query  482  VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR  540
            +  +  +  +++ +         +QA    +++       KI D+ Q        +   R
Sbjct  552  LYGDRITASMEKAIGETERRRAKQQAYNEERRIIPQGLNKKIGDILQLGQPSMRGKGKGR  611

Query  541  ENQRQQFPVEHVQL  554
             + +     ++  L
Sbjct  612  GSHKMADTTQYQSL  625


 Score = 33.6 bits (75),  Expect = 7.4, Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 21/65 (32%), Gaps = 7/65 (11%)

Query  9   EVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFR  68
           E +   L  + ++    TG+GKT   A V             ++L     L  Q   E +
Sbjct  26  EGLENGLAHQTLLGV--TGSGKTFTVANVIADL-----NRPTMILAPNKTLAAQLYGEMK  78

Query  69  RMLDG  73
                
Sbjct  79  EFFPD  83


>sp|A4TNQ1|UVRB_YERPP UvrABC system protein B OS=Yersinia pestis 
(strain Pestoides F) OX=386656 GN=uvrB PE=3 SV=1
Length=671

 Score = 89.1 bits (219),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 42/254 (17%), Positives = 97/254 (38%), Gaps = 22/254 (9%)

Query  307  QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSN  366
            Q  Y      K ++  +   ++         L  L    P   +++ L   ++    ++ 
Sbjct  388  QTIYVSATPGKYELEKSGGDIIEQVVRPTGLLDPLIEVRPVATQVDDLLSEIR--IRAAI  445

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R ++ T T++ A  L  +L +               GA      + +   ++ E+I+ 
Sbjct  446  NERVLVTTLTKRMAEDLTDYLSE--------------HGAKVRYLHSDIDTVERVEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  + +  A 
Sbjct  492  LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAI  551

Query  482  VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR  540
            +  +  +  +++ +         +QA    +++       KI D+ Q        +   R
Sbjct  552  LYGDRITASMEKAIGETERRRAKQQAYNEERRIIPQGLNKKIGDILQLGQPSMRGKGKGR  611

Query  541  ENQRQQFPVEHVQL  554
             + +     ++  L
Sbjct  612  GSHKMADTTQYQSL  625


 Score = 33.6 bits (75),  Expect = 7.4, Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 21/65 (32%), Gaps = 7/65 (11%)

Query  9   EVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFR  68
           E +   L  + ++    TG+GKT   A V             ++L     L  Q   E +
Sbjct  26  EGLENGLAHQTLLGV--TGSGKTFTVANVIADL-----NRPTMILAPNKTLAAQLYGEMK  78

Query  69  RMLDG  73
                
Sbjct  79  EFFPD  83


>sp|Q1CFQ8|UVRB_YERPN UvrABC system protein B OS=Yersinia pestis 
bv. Antiqua (strain Nepal516) OX=377628 GN=uvrB PE=3 SV=1
Length=671

 Score = 89.1 bits (219),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 42/254 (17%), Positives = 97/254 (38%), Gaps = 22/254 (9%)

Query  307  QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSN  366
            Q  Y      K ++  +   ++         L  L    P   +++ L   ++    ++ 
Sbjct  388  QTIYVSATPGKYELEKSGGDIIEQVVRPTGLLDPLIEVRPVATQVDDLLSEIR--IRAAI  445

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R ++ T T++ A  L  +L +               GA      + +   ++ E+I+ 
Sbjct  446  NERVLVTTLTKRMAEDLTDYLSE--------------HGAKVRYLHSDIDTVERVEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  + +  A 
Sbjct  492  LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAI  551

Query  482  VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR  540
            +  +  +  +++ +         +QA    +++       KI D+ Q        +   R
Sbjct  552  LYGDRITASMEKAIGETERRRAKQQAYNEERRIIPQGLNKKIGDILQLGQPSMRGKGKGR  611

Query  541  ENQRQQFPVEHVQL  554
             + +     ++  L
Sbjct  612  GSHKMADTTQYQSL  625


 Score = 33.6 bits (75),  Expect = 7.4, Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 21/65 (32%), Gaps = 7/65 (11%)

Query  9   EVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFR  68
           E +   L  + ++    TG+GKT   A V             ++L     L  Q   E +
Sbjct  26  EGLENGLAHQTLLGV--TGSGKTFTVANVIADL-----NRPTMILAPNKTLAAQLYGEMK  78

Query  69  RMLDG  73
                
Sbjct  79  EFFPD  83


>sp|A9R3D3|UVRB_YERPG UvrABC system protein B OS=Yersinia pestis 
bv. Antiqua (strain Angola) OX=349746 GN=uvrB PE=3 SV=1
Length=671

 Score = 89.1 bits (219),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 42/254 (17%), Positives = 97/254 (38%), Gaps = 22/254 (9%)

Query  307  QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSN  366
            Q  Y      K ++  +   ++         L  L    P   +++ L   ++    ++ 
Sbjct  388  QTIYVSATPGKYELEKSGGDIIEQVVRPTGLLDPLIEVRPVATQVDDLLSEIR--IRAAI  445

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R ++ T T++ A  L  +L +               GA      + +   ++ E+I+ 
Sbjct  446  NERVLVTTLTKRMAEDLTDYLSE--------------HGAKVRYLHSDIDTVERVEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  + +  A 
Sbjct  492  LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAI  551

Query  482  VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR  540
            +  +  +  +++ +         +QA    +++       KI D+ Q        +   R
Sbjct  552  LYGDRITASMEKAIGETERRRAKQQAYNEERRIIPQGLNKKIGDILQLGQPSMRGKGKGR  611

Query  541  ENQRQQFPVEHVQL  554
             + +     ++  L
Sbjct  612  GSHKMADTTQYQSL  625


 Score = 33.6 bits (75),  Expect = 7.4, Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 21/65 (32%), Gaps = 7/65 (11%)

Query  9   EVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFR  68
           E +   L  + ++    TG+GKT   A V             ++L     L  Q   E +
Sbjct  26  EGLENGLAHQTLLGV--TGSGKTFTVANVIADL-----NRPTMILAPNKTLAAQLYGEMK  78

Query  69  RMLDG  73
                
Sbjct  79  EFFPD  83


>sp|Q8ZGW7|UVRB_YERPE UvrABC system protein B OS=Yersinia pestis 
OX=632 GN=uvrB PE=3 SV=1
Length=671

 Score = 89.1 bits (219),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 42/254 (17%), Positives = 97/254 (38%), Gaps = 22/254 (9%)

Query  307  QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSN  366
            Q  Y      K ++  +   ++         L  L    P   +++ L   ++    ++ 
Sbjct  388  QTIYVSATPGKYELEKSGGDIIEQVVRPTGLLDPLIEVRPVATQVDDLLSEIR--IRAAI  445

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R ++ T T++ A  L  +L +               GA      + +   ++ E+I+ 
Sbjct  446  NERVLVTTLTKRMAEDLTDYLSE--------------HGAKVRYLHSDIDTVERVEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  + +  A 
Sbjct  492  LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAI  551

Query  482  VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR  540
            +  +  +  +++ +         +QA    +++       KI D+ Q        +   R
Sbjct  552  LYGDRITASMEKAIGETERRRAKQQAYNEERRIIPQGLNKKIGDILQLGQPSMRGKGKGR  611

Query  541  ENQRQQFPVEHVQL  554
             + +     ++  L
Sbjct  612  GSHKMADTTQYQSL  625


 Score = 33.6 bits (75),  Expect = 7.4, Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 21/65 (32%), Gaps = 7/65 (11%)

Query  9   EVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFR  68
           E +   L  + ++    TG+GKT   A V             ++L     L  Q   E +
Sbjct  26  EGLENGLAHQTLLGV--TGSGKTFTVANVIADL-----NRPTMILAPNKTLAAQLYGEMK  78

Query  69  RMLDG  73
                
Sbjct  79  EFFPD  83


>sp|O29889|XPB_ARCFU DNA 3'-5' translocase XPB OS=Archaeoglobus 
fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 
/ VC-16) OX=224325 GN=xpb PE=1 SV=1
Length=452

 Score = 87.9 bits (216),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 58/169 (34%), Gaps = 33/169 (20%)

Query  1    MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV  60
            + LR YQ + +   L  K   I LPTG+GKT  A                +++V  + L 
Sbjct  72   ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELSTPT-----LIVVPTLALA  126

Query  61   TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
             Q  E      +         G+   R     +     L + T +    A  + E+    
Sbjct  127  EQWKERLGIFGE------EYVGEFSGR-----IKELKPLTVSTYD---SAYVNAEKLG--  170

Query  121  ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS  169
                F L++ DE HH   +  Y  I               P  LGLTA+
Sbjct  171  --NRFMLLIFDEVHHLPAE-SYVQIAQ---------MSIAPFRLGLTAT  207


 Score = 76.4 bits (186),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 45/269 (17%), Positives = 88/269 (33%), Gaps = 40/269 (15%)

Query  209  EHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPE------LSRKFGTQMYEQQV  262
            E    P + Y    + S  PF   L    ++     E+ +      +   F   +  + +
Sbjct  180  EVHHLPAESYVQIAQMSIAPFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHL  239

Query  263  VKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILC  322
             K +       L E        R       +    R +  L   +DF       K  +  
Sbjct  240  AKYTIKRIFVPLAEDERVEYEKREKVYKQFLR--ARGI-TLRRAEDF------NKIVMAS  290

Query  323  AERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHS  382
                          E   +A +     K+  L +IL+R        + IIFTR  +  + 
Sbjct  291  GYDERAYEALRAWEEARRIAFNSKN--KIRKLREILERH----RKDKIIIFTRHNELVYR  344

Query  383  LLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAE  442
            +                          + +   ++ +++E+++ F+ G    +V++ V +
Sbjct  345  ISKVFL-------------------IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLD  385

Query  443  EGLDIPHCNVVVRYGLLTNEISMVQARGR  471
            EG+D+P  NV V      +    +Q  GR
Sbjct  386  EGIDVPDANVGVIMSGSGSAREYIQRLGR  414


>sp|Q7W8V6|UVRB_BORPA UvrABC system protein B OS=Bordetella parapertussis 
(strain 12822 / ATCC BAA-587 / NCTC 13253) OX=257311 
GN=uvrB PE=3 SV=1
Length=675

 Score = 89.1 bits (219),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 82/564 (15%), Positives = 174/564 (31%), Gaps = 114/564 (20%)

Query  26   TGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRR----------------  69
            TG+GKT   A +  R      G   +VL     L  Q   E R                 
Sbjct  50   TGSGKTYTMANMIARL-----GRPALVLAPNKTLAAQLYAEMREFFPRNAVEYFVSYYDY  104

Query  70   ------------MLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE  117
                         ++   ++      M   A    L R   +++ T   +       +  
Sbjct  105  YQPEAYVPTRDLFIEKDSSINEHIEQMRLSATKSLLERRDTVIVGTVSCIYGIGNPGDYH  164

Query  118  EHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASK  177
              V +      +      + ++ +  ++  QY        + + +V G T       + +
Sbjct  165  AMVLILRTGDRI------SRREVLARLVAMQYTRNDADFTRGVFRVRGETIDIFPAESPE  218

Query  178  LDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLM  237
            L   +        +L+ +  ++ +    +L   +  P   Y             + ++L 
Sbjct  219  LALRLTLFDDEIESLELFDPLTGR-VRQKLPRFTVYPGSHYVTPRETVLRAIETIKEELR  277

Query  238  DQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND--------  289
            +++   +   +L      ++ ++    L     L   +    Y+ HL             
Sbjct  278  ERLAQLIADGKLVE--AQRLEQRTRFDLEMLQELGFCKGIENYSRHLSGAAPGEPPPTLI  335

Query  290  ALLIHDTVRAVDA----LAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATH-  344
              L  D +  +D     +  L   Y  +   K  ++    RL +  D+R   L       
Sbjct  336  DYLPADALMFIDESHVTIGQLGGMYRGDRSRKETLVQYGFRLPSALDNRPLRLEEFEARM  395

Query  345  --------------------------------------GPENPKLEMLEKILQRQFSSSN  366
                                                   P + +++ L   + +   ++ 
Sbjct  396  RQCVFVSATPAAYEQEHADNVVEQVVRPTGLVDPIVEVRPAHTQVDDLLGEIHK--RAAL  453

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
              R ++ T T++ A  L  +L +               G       + +   ++ E+I+ 
Sbjct  454  QERVLVTTLTKRMAEDLTDFLSE--------------HGVRVRYLHSDIDTVERVEIIRD  499

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  S+  EGLDIP  ++V          L +E S++Q  GRA  + +  A 
Sbjct  500  LRLGVFDVLVGISLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGRAI  559

Query  482  VATEGSRELKRELINEALETLMEQ  505
            +  +   +  R  I+E      +Q
Sbjct  560  LYADRITDSMRRAIDETERRRAKQ  583


>sp|Q18212|DX39B_CAEEL Spliceosome RNA helicase DDX39B homolog 
OS=Caenorhabditis elegans OX=6239 GN=hel-1 PE=1 SV=1
Length=425

 Score = 87.9 bits (216),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 57/173 (33%), Gaps = 19/173 (11%)

Query  324  ERRLLALFDDRKNELAHLATHG----PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQS  379
            +R +    +   ++ A L  HG        K     + L     +    + +IF +  + 
Sbjct  236  KRFMQDPMEVYVDDEAKLTLHGLQQHYVKLKEAEKNRRLLNLLDALEFNQVVIFVKAVKR  295

Query  380  AHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATS  439
              +L   L +Q                   +    M Q ++    Q F+D    +LVAT 
Sbjct  296  CEALHQLLTEQNFPSI--------------AIHRQMAQEERLSRYQAFKDFQKRILVATD  341

Query  440  VAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARA-DQSVYAFVATEGSRELK  491
            +   G+DI   N+V  Y +  +  S +    RA        A        + K
Sbjct  342  LFGRGMDIERVNIVFNYDMPEDSDSYLHRVARAGRFGTKGLAITFVSDENDAK  394


 Score = 53.3 bits (126),  Expect = 5e-06, Method: Composition-based stats.
 Identities = 38/168 (23%), Positives = 65/168 (39%), Gaps = 14/168 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQ---  62
            Q E I  A+ G +++    +G GKT        + LE VDG   VV + +   L  Q   
Sbjct  68   QHECIPQAILGMDVVCQAKSGMGKTAVFVITTLQQLEPVDGEVSVVCMCHTRELAFQISK  127

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCH-DLLICTAELLQMALTSPEEEEHVE  121
              E F + L G   V    G M  +     LA     +++ T   +     +      ++
Sbjct  128  EYERFSKYLPG-VKVAVFFGGMAIKKDEERLANDCPHIVVGTPGRML----ALARSGKLK  182

Query  122  LTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS  169
            L      V+DEC     D      + + +++  Q+     QV+  +A+
Sbjct  183  LDKVKYFVLDECDKMIGDADMRRDVQEIVKMTPQQK----QVMMFSAT  226


>sp|C6DDU0|UVRB_PECCP UvrABC system protein B OS=Pectobacterium 
carotovorum subsp. carotovorum (strain PC1) OX=561230 GN=uvrB 
PE=3 SV=1
Length=670

 Score = 89.1 bits (219),  Expect = 5e-17, Method: Composition-based stats.
 Identities = 47/274 (17%), Positives = 105/274 (38%), Gaps = 34/274 (12%)

Query  337  ELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTV  396
             L  L    P   +++ L   +++   ++ + R ++ T T++ A  L  +L++       
Sbjct  418  LLDPLIEVRPVATQVDDLLSEIRQ--RAAVNERVLVTTLTKRMAEDLTEYLEE-------  468

Query  397  DIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY  456
                    G       + +   ++ E+I+  + G  ++LV  ++  EGLD+P  ++V   
Sbjct  469  -------HGERVRYLHSDIDTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAIL  521

Query  457  G-----LLTNEISMVQARGRARADQSVYAFVATEG-SRELKRELINEALETLMEQAVAAV  510
                   L +E S++Q  GRA  +    A +  +  +  + + +         ++A    
Sbjct  522  DADKEGFLRSERSLIQTIGRAARNLRGKAILYGDKITPSMAKAIGETERRREKQEAYNTE  581

Query  511  QKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQLLCINCMVAVGHGSDLR  570
              +       KI D+ Q  L +   +   R N++   P    +L+    +        +R
Sbjct  582  HGIVPQGLNKKISDILQ--LGQPTNRGKGRGNRKAAEPAARYELMTPKALELK-----IR  634

Query  571  KVEG---THHVNVNPNFSNYYNVSRDPVVINKVF  601
            ++E    TH  N+   F     +  +   +   F
Sbjct  635  ELESKMLTHAQNL--EFEEAAALRDELQALRAQF  666


>sp|A3D001|RAPA_SHEB5 RNA polymerase-associated protein RapA OS=Shewanella 
baltica (strain OS155 / ATCC BAA-1091) OX=325240 
GN=rapA PE=3 SV=1
Length=968

 Score = 89.5 bits (220),  Expect = 5e-17, Method: Composition-based stats.
 Identities = 75/452 (17%), Positives = 150/452 (33%), Gaps = 40/452 (9%)

Query  27   GAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGP  86
            G GKT  A  +  + L T    +++++V    L  Q   E  R  + R++V      +  
Sbjct  179  GLGKTIEAGLIIHQQLLTGRAERILIIVPD-TLRHQWLVEMLRRFNLRFSVFDEDRCVEA  237

Query  87   RAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHT--HKDTVYNV  144
             A   +      L+IC+       L   +  +      + L+VVDE HH    ++     
Sbjct  238  YADHDNPFYTEQLVICS----LELLRKKKRLDQALDADWDLLVVDEAHHLEWTEEAPSRA  293

Query  145  IMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCC  204
                  ++    ++ +P VL LTA+P         G  +H  +L   LD        +  
Sbjct  294  -----YQVVEALSEVIPGVLLLTATP------DQLGHESHFARL-RLLDPDRFY---DYD  338

Query  205  PQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVK  264
              L E                     D     + ++    ++    R       + +V +
Sbjct  339  AFLAEEDSYKDVAIAAEALAGNTKLPDAAINSLTELLGEKDISPSIRLIQADGIDAEVQQ  398

Query  265  LSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAE  324
             + +  L  L ++      L R + A +     R  +A        ++     + ++   
Sbjct  399  AARSELLQELLDRHGTGRVLYRNSRASVKGFPKRFFNAYPHAMPDQYQTAARVSGMMGGH  458

Query  325  RRL---LALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAH  381
            + L    A     +        +     K +     L     S  S + +I     ++A 
Sbjct  459  KSLEAKAAQALSPEKLYQEFEDNSASWWKFDPRVDWLIEFLKSHRSKKVLIIASQAETAL  518

Query  382  SLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF--QDGTLNLLVATS  439
            SL   L+ ++G+Q                    M+  ++ +    F  ++G    L+ + 
Sbjct  519  SLEEALRTREGIQATVFH-------------EGMSIIERDKAGAYFAQEEGGAQALICSE  565

Query  440  VAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
            +  EG +    + +V + L  N   + Q  GR
Sbjct  566  IGSEGRNFQFASHLVLFDLPLNPDLLEQRIGR  597


>sp|Q8SQM5|IF4A_ENCCU ATP-dependent RNA helicase eIF4A OS=Encephalitozoon 
cuniculi (strain GB-M1) OX=284813 GN=TIF1 PE=1 SV=1
Length=425

 Score = 87.5 bits (215),  Expect = 5e-17, Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 72/185 (39%), Gaps = 27/185 (15%)

Query  330  LFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQ  389
              D RK             PKL  L  I    F      + I+F  +++ A  +  WL +
Sbjct  257  FIDLRKEPPFRKGREDYLLPKLVTLYDI----FRKQRLGQSIVFINSKEDARIVYDWLIR  312

Query  390  QQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPH  449
             +         +L+        S  +TQ +++  + +F+ GT   L+++ +   G+DI +
Sbjct  313  HE------WECELI--------SAELTQAERERTLNRFRGGTGRCLISSGLLSRGIDIQN  358

Query  450  CNVVVRYGLLTNEI--SMVQARGR-ARADQSVYAFVATEGSRELKRELIN-EALETLMEQ  505
             +VV    + + E   + +   GR  R  +   A      +   + EL N +A+E     
Sbjct  359  LSVVFCLDVPSFERKSTYIHRIGRSGRYGRKGIAI-----NIVYEHELKNLKAIERFYNT  413

Query  506  AVAAV  510
             +  +
Sbjct  414  TIKEL  418


 Score = 48.6 bits (114),  Expect = 1e-04, Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 51/131 (39%), Gaps = 10/131 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT---RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQH  63
            Q   I P ++G++I     +G GKT     AA       +  D  +++VL +   +  Q+
Sbjct  65   QKAAIQPIIDGRDIRAQAQSGTGKTGAFAVAALQICDMSQ--DVTQILVLASTREIAAQN  122

Query  64   GEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
               F  +       V  LSG     A    L +   +++ T   ++  +   E    + +
Sbjct  123  AARFEDLGCFMGARVALLSGGSPIAADKVALEKKPHIVVGTPGRVEHMININE----LSM  178

Query  123  TVFSLIVVDEC  133
                L V+DE 
Sbjct  179  DNIKLFVIDEA  189


>sp|A5DUB2|MAK5_LODEL ATP-dependent RNA helicase MAK5 OS=Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=MAK5 PE=3 SV=1
Length=855

 Score = 89.1 bits (219),  Expect = 5e-17, Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 47/121 (39%), Gaps = 19/121 (16%)

Query  370  GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD  429
             ++F  +  S   L+  L                      +  + M Q+ +   +++F+D
Sbjct  527  TLVFANSIDSVKRLVPLLNNLNIPAF--------------AIHSSMIQKQRLRSLERFKD  572

Query  430  ----GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVAT  484
                    +LVA+ VA  GLDIP+ + V  Y L  +    +   GR ARA +   + +  
Sbjct  573  ASEKNQTAVLVASDVAARGLDIPNIDHVAHYHLPRSADVYIHRSGRTARAGKEGVSVMFC  632

Query  485  E  485
             
Sbjct  633  S  633


 Score = 50.2 bits (118),  Expect = 6e-05, Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 61/143 (43%), Gaps = 18/143 (13%)

Query  14   ALEGKNIIIWLPTGAGKTRAA-AYVAKRHLETVD--GAKV----------VVLVNRVHLV  60
            ALEGK++I    TG+GKT A    + +++++++D    KV          ++      L 
Sbjct  253  ALEGKDVIGKATTGSGKTLAYGIPILEKYIQSLDTVKRKVREKVVNHPTGIIFAPTRELA  312

Query  61   TQHGEEFRRMLDGRWTVTT----LSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE  116
             Q  +   ++       T     ++G +  +     L+    +++ T   +   L   ++
Sbjct  313  HQVVDHLNKIAQYSPLSTKGIVSVTGGLSIQKQERLLSFGPGIIVATPGRMLE-LCQNDQ  371

Query  117  EEHVELTVFSLIVVDECHHTHKD  139
            E    L++  +IV+DE     +D
Sbjct  372  ELVKRLSMTDIIVLDEADRLLQD  394


>sp|Q8VDW0|DX39A_MOUSE ATP-dependent RNA helicase DDX39A OS=Mus 
musculus OX=10090 GN=Ddx39a PE=1 SV=1
Length=427

 Score = 87.5 bits (215),  Expect = 5e-17, Method: Composition-based stats.
 Identities = 33/199 (17%), Positives = 70/199 (35%), Gaps = 29/199 (15%)

Query  310  YHREHVTKTQILCAERRLLALFDDRKNELAHLATHG--------PENPKLEMLEKILQRQ  361
                 ++K       + +    +   ++   L  HG         ++ K   L  +L   
Sbjct  225  MFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVL  284

Query  362  FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ  421
                   + +IF ++ Q   +L   L +Q                   +    M Q ++ 
Sbjct  285  ----EFNQVVIFVKSVQRCMALAQLLVEQNFPAI--------------AIHRGMAQEERL  326

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQS---V  478
               Q+F+D    +LVAT++   G+DI   N+V  Y +  +  + +    RA    +    
Sbjct  327  SRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLA  386

Query  479  YAFVATEGSRELKRELINE  497
              FV+ E   ++  ++ + 
Sbjct  387  VTFVSDENDAKILNDVQDR  405


 Score = 47.5 bits (111),  Expect = 3e-04, Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 51/132 (39%), Gaps = 10/132 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQ---  62
            Q E I  A+ G +++    +G GKT        + +E V+G   V+V+ +   L  Q   
Sbjct  71   QHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVSVLVMCHTRELAFQISK  130

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCH-DLLICTAELLQMALTSPEEEEHVE  121
              E F + +     V+   G +  +     L +    +++ T       + +      + 
Sbjct  131  EYERFSKYMP-SVKVSVFFGGLSIKKDEDVLKKNCPHVVVGTP----GRILALVRSRSLN  185

Query  122  LTVFSLIVVDEC  133
            L      V+DEC
Sbjct  186  LRNVKHFVLDEC  197


>sp|A9L3Y2|RAPA_SHEB9 RNA polymerase-associated protein RapA OS=Shewanella 
baltica (strain OS195) OX=399599 GN=rapA PE=3 SV=1
Length=968

 Score = 89.1 bits (219),  Expect = 5e-17, Method: Composition-based stats.
 Identities = 75/452 (17%), Positives = 150/452 (33%), Gaps = 40/452 (9%)

Query  27   GAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGP  86
            G GKT  A  +  + L T    +++++V    L  Q   E  R  + R++V      +  
Sbjct  179  GLGKTIEAGLIIHQQLLTGRAERILIIVPD-TLRHQWLVEMLRRFNLRFSVFDEDRCVEA  237

Query  87   RAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHT--HKDTVYNV  144
             A   +      L+IC+       L   +  +      + L+VVDE HH    ++     
Sbjct  238  YADHDNPFYTEQLVICS----LELLRKKKRLDQALDADWDLLVVDEAHHLEWTEEAPSRA  293

Query  145  IMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCC  204
                  ++    ++ +P VL LTA+P         G  +H  +L   LD        +  
Sbjct  294  -----YQVVEALSEVIPGVLLLTATP------DQLGHESHFARL-RLLDPDRFY---DYD  338

Query  205  PQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVK  264
              L E                     D     + ++    ++    R       + +V +
Sbjct  339  AFLAEEDSYKDVAIAAEALAGNAKLPDAAINSLTELLGEKDISPSIRLIQADGIDAEVQQ  398

Query  265  LSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAE  324
             + +  L  L ++      L R + A +     R  +A        ++     + ++   
Sbjct  399  AARSELLQELLDRHGTGRVLYRNSRASVKGFPKRFFNAYPHAMPDQYQTAARVSGMMGGH  458

Query  325  RRL---LALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAH  381
            + L    A     +        +     K +     L     S  S + +I     ++A 
Sbjct  459  KSLEAKAAQALSPEKLYQEFEDNSASWWKFDPRVDWLIEFLKSHRSKKVLIIASQAETAL  518

Query  382  SLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF--QDGTLNLLVATS  439
            SL   L+ ++G+Q                    M+  ++ +    F  ++G    L+ + 
Sbjct  519  SLEEALRTREGIQATVFH-------------EGMSIIERDKAGAYFAQEEGGAQALICSE  565

Query  440  VAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
            +  EG +    + +V + L  N   + Q  GR
Sbjct  566  IGSEGRNFQFASHLVLFDLPLNPDLLEQRIGR  597


>sp|B8ECC6|RAPA_SHEB2 RNA polymerase-associated protein RapA OS=Shewanella 
baltica (strain OS223) OX=407976 GN=rapA PE=3 SV=1
Length=968

 Score = 89.1 bits (219),  Expect = 5e-17, Method: Composition-based stats.
 Identities = 75/452 (17%), Positives = 150/452 (33%), Gaps = 40/452 (9%)

Query  27   GAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGP  86
            G GKT  A  +  + L T    +++++V    L  Q   E  R  + R++V      +  
Sbjct  179  GLGKTIEAGLIIHQQLLTGRAERILIIVPD-TLRHQWLVEMLRRFNLRFSVFDEDRCVEA  237

Query  87   RAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHT--HKDTVYNV  144
             A   +      L+IC+       L   +  +      + L+VVDE HH    ++     
Sbjct  238  YADHDNPFYTEQLVICS----LELLRKKKRLDQALDADWDLLVVDEAHHLEWTEEAPSRA  293

Query  145  IMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCC  204
                  ++    ++ +P VL LTA+P         G  +H  +L   LD        +  
Sbjct  294  -----YQVVEALSEVIPGVLLLTATP------DQLGHESHFARL-RLLDPDRFY---DYD  338

Query  205  PQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVK  264
              L E                     D     + ++    ++    R       + +V +
Sbjct  339  AFLAEEDSYKDVAIAAEALAGNAKLPDAAINSLTELLGEKDISPSIRLIQADGIDAEVQQ  398

Query  265  LSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAE  324
             + +  L  L ++      L R + A +     R  +A        ++     + ++   
Sbjct  399  AARSELLQELLDRHGTGRVLYRNSRASVKGFPKRFFNAYPHAMPDQYQTAARVSGMMGGH  458

Query  325  RRL---LALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAH  381
            + L    A     +        +     K +     L     S  S + +I     ++A 
Sbjct  459  KSLEAKAAQALSPEKLYQEFEDNSASWWKFDPRVDWLIEFLKSHRSKKVLIIASQAETAL  518

Query  382  SLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF--QDGTLNLLVATS  439
            SL   L+ ++G+Q                    M+  ++ +    F  ++G    L+ + 
Sbjct  519  SLEEALRTREGIQATVFH-------------EGMSIIERDKAGAYFAQEEGGAQALICSE  565

Query  440  VAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
            +  EG +    + +V + L  N   + Q  GR
Sbjct  566  IGSEGRNFQFASHLVLFDLPLNPDLLEQRIGR  597


>sp|A6WSX5|RAPA_SHEB8 RNA polymerase-associated protein RapA OS=Shewanella 
baltica (strain OS185) OX=402882 GN=rapA PE=3 SV=1
Length=968

 Score = 89.1 bits (219),  Expect = 5e-17, Method: Composition-based stats.
 Identities = 75/452 (17%), Positives = 151/452 (33%), Gaps = 40/452 (9%)

Query  27   GAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGP  86
            G GKT  A  +  + L T    +++++V    L  Q   E  R  + R++V      +  
Sbjct  179  GLGKTIEAGLIIHQQLLTGRAERILIIVPD-TLRHQWLVEMLRRFNLRFSVFDEDRCVEA  237

Query  87   RAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHT--HKDTVYNV  144
             A   +      L+IC+       L   +  +      + L+VVDE HH    ++     
Sbjct  238  YADHDNPFYTEQLVICS----LELLRKKKRLDQALDADWDLLVVDEAHHLEWTEEAPSRA  293

Query  145  IMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCC  204
                  ++    ++ +P VL LTA+P         G  +H  +L   LD        +  
Sbjct  294  -----YQVVEALSEVIPGVLLLTATP------DQLGHESHFARL-RLLDPDRFY---DYD  338

Query  205  PQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVK  264
              L E                     D     + ++    ++    R    +  + +V +
Sbjct  339  AFLAEEDSYKDVAIAAEALAGNAKLPDAAINSLTELLGEKDISPSIRLIQAEGIDAEVQQ  398

Query  265  LSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAE  324
             + +  L  L ++      L R + A +     R  +A        ++     + ++   
Sbjct  399  AARSELLQELLDRHGTGRVLYRNSRASVKGFPKRFFNAYPHAMPDQYQTAARVSGMMGGH  458

Query  325  RRL---LALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAH  381
            + L    A     +        +     K +     L     S  S + +I     ++A 
Sbjct  459  KSLEAKAAQALSPEKLYQEFEDNSASWWKFDPRVDWLIEFLKSHRSKKVLIIASQAETAL  518

Query  382  SLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF--QDGTLNLLVATS  439
            SL   L+ ++G+Q                    M+  ++ +    F  ++G    L+ + 
Sbjct  519  SLEEALRTREGIQATVFH-------------EGMSIIERDKAGAYFAQEEGGAQALICSE  565

Query  440  VAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
            +  EG +    + +V + L  N   + Q  GR
Sbjct  566  IGSEGRNFQFASHLVLFDLPLNPDLLEQRIGR  597


>sp|Q2L244|UVRB_BORA1 UvrABC system protein B OS=Bordetella avium 
(strain 197N) OX=360910 GN=uvrB PE=3 SV=1
Length=676

 Score = 88.7 bits (218),  Expect = 5e-17, Method: Composition-based stats.
 Identities = 85/563 (15%), Positives = 171/563 (30%), Gaps = 112/563 (20%)

Query  26   TGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRR----------------  69
            TG+GKT   A V  R      G   +VL     L  Q   E R                 
Sbjct  50   TGSGKTFTMANVIARL-----GRPALVLAPNKTLAAQLYAEMRDFFPKNAVEYFVSYYDY  104

Query  70   ------------MLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE  117
                         ++   +V      M   A    L R   +++ T   +       +  
Sbjct  105  YQPEAYVPTRDLFIEKDSSVNEHIEQMRLSATKSLLERRDTIIVGTVSCIYGIGNPGDYH  164

Query  118  EHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASK  177
              V +      +      + ++ +  ++  QY        +   +V G T       + +
Sbjct  165  AMVLILRAGDRI------SRREVLARLVAMQYTRNDADFTRGAFRVRGETIDIFPAESPE  218

Query  178  LDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLM  237
            L   +         L+ +  ++      +L   +  P   Y             + ++L 
Sbjct  219  LALRLTLFDDEVETLELFDPLT-GKVRQKLPRFTVYPGSHYVTPRETVLRAIETIREELR  277

Query  238  DQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQ-RVYALHLRRYND-------  289
            +++          +    Q  EQ+     E     G  +    Y+ HL            
Sbjct  278  ERLSTF---TNEGKLLEAQRIEQRTRFDLEMLQELGFCKGIENYSRHLSGAAPGEPPPTL  334

Query  290  -ALLIHDTVRAVDA----LAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATH  344
               L  D +  +D     +  L   Y  +   K  ++    RL +  D+R   L      
Sbjct  335  IDYLPADALMFIDESHVTVGQLGGMYRGDRARKETLVQYGFRLPSALDNRPLRLEEFEAR  394

Query  345  ------------------------------GPENPKLEM------LEKILQRQFSS-SNS  367
                                          G  +P++E+      ++ +L       +  
Sbjct  395  MRQCVFVSATPADYERQHADNVVEQVVRPTGLVDPEVEVRPAHTQVDDLLGEIRHRVARQ  454

Query  368  PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF  427
             R ++ T T++ +  L  +L +               G       + +   ++ E+I+  
Sbjct  455  ERVLVTTLTKRMSEDLTDFLAE--------------HGVRVRYLHSDIDTVERVEIIRDL  500

Query  428  QDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAFV  482
            + G  ++LV  ++  EGLDIP  ++V          L +E S++Q  GRA  +   +A +
Sbjct  501  RLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLHGHAIL  560

Query  483  ATEGSRELKRELINEALETLMEQ  505
              +   +  R  ++E      +Q
Sbjct  561  YADRITDSMRRAMDETSRRRSKQ  583


>sp|Q5U216|DX39A_RAT ATP-dependent RNA helicase DDX39A OS=Rattus 
norvegicus OX=10116 GN=Ddx39a PE=2 SV=1
Length=427

 Score = 87.5 bits (215),  Expect = 5e-17, Method: Composition-based stats.
 Identities = 33/199 (17%), Positives = 70/199 (35%), Gaps = 29/199 (15%)

Query  310  YHREHVTKTQILCAERRLLALFDDRKNELAHLATHG--------PENPKLEMLEKILQRQ  361
                 ++K       + +    +   ++   L  HG         ++ K   L  +L   
Sbjct  225  MFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVL  284

Query  362  FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ  421
                   + +IF ++ Q   +L   L +Q                   +    M Q ++ 
Sbjct  285  ----EFNQVVIFVKSVQRCMALAQLLVEQNFPAI--------------AIHRGMAQEERL  326

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQS---V  478
               Q+F+D    +LVAT++   G+DI   N+V  Y +  +  + +    RA    +    
Sbjct  327  SRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLA  386

Query  479  YAFVATEGSRELKRELINE  497
              FV+ E   ++  ++ + 
Sbjct  387  VTFVSDENDAKILNDVQDR  405


 Score = 47.5 bits (111),  Expect = 3e-04, Method: Composition-based stats.
 Identities = 26/132 (20%), Positives = 51/132 (39%), Gaps = 10/132 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQ---  62
            Q E I  A+ G +++    +G GKT        + +E ++G   V+V+ +   L  Q   
Sbjct  71   QHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPINGQVSVLVMCHTRELAFQISK  130

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCH-DLLICTAELLQMALTSPEEEEHVE  121
              E F + +     V+   G +  +     L +    +++ T       + +      + 
Sbjct  131  EYERFSKYMP-SVKVSVFFGGLSIKKDEDVLKKNCPHVVVGTP----GRILALVRSRSLN  185

Query  122  LTVFSLIVVDEC  133
            L      V+DEC
Sbjct  186  LRNVKHFVLDEC  197


>sp|Q6FNA2|DBP10_CANGA ATP-dependent RNA helicase DBP10 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DBP10 PE=3 SV=1
Length=969

 Score = 89.1 bits (219),  Expect = 5e-17, Method: Composition-based stats.
 Identities = 48/280 (17%), Positives = 94/280 (34%), Gaps = 38/280 (14%)

Query  218  YNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQ--------VVKLSEAA  269
            ++   R  +  F + L +L+  +    +    S    T + +          +V+L   +
Sbjct  265  FDEADRLFEMGFQEQLNELLAALPSSRQTLLFSATLPTSLVDFAKAGLVNPVLVRLDAES  324

Query  270  ALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLA  329
             ++   E  ++        +A L++  ++ V  L        ++          E    A
Sbjct  325  KISDNLE-MLFLSTKNDEREANLLY-ILQEVIKLPLATPEQIKQLNDNKADDSDES---A  379

Query  330  LFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQ  389
              D+ K      + +    PK   L           +    ++F  TR     L   L+ 
Sbjct  380  EEDEDKKRRKRKSFNRKAMPKANEL----------PSEKATVVFVPTRHHVEYLSNLLKD  429

Query  390  QQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPH  449
                         L+     +    + Q  ++  +  F+ G  ++LV T VA  G+DIP 
Sbjct  430  ----------CGYLVSYIYGA----LDQHARKSQLYNFRIGLTSILVVTDVAARGVDIPM  475

Query  450  CNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSR  488
               VV Y L  +    +   GR ARA    +A+     + 
Sbjct  476  LANVVNYSLPASSKIFIHRVGRTARAGNRGWAYSIVSENE  515


 Score = 55.6 bits (132),  Expect = 1e-06, Method: Composition-based stats.
 Identities = 48/252 (19%), Positives = 82/252 (33%), Gaps = 31/252 (12%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA---KVVVLVNRVHLVTQHGEEFRRML  71
            L+ ++I+    TG+GKT A        L+T       + ++L     L  Q    F+   
Sbjct  150  LQNRDIVGMARTGSGKTAAFVLPMIEKLKTHSSKIGARAIILSPSRELAMQTHSVFKEFS  209

Query  72   DG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV  130
             G       L+G       FG +    D++I T           + E +++L      V 
Sbjct  210  RGTHLRSVLLTGGDSLEDQFGMMMTNPDVIIATPGRFLH----LKVEMNLDLKSVEYAVF  265

Query  131  DECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS-PGTGGASKLDGAINHVLQLC  189
            DE         + +   + L   L       Q L  +A+ P +       G +N VL   
Sbjct  266  DEADRL-----FEMGFQEQLNELLAALPSSRQTLLFSATLPTSLVDFAKAGLVNPVLV--  318

Query  190  ANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPEL  249
              LD    +S       L                ++ +   +LL  L + I   L  PE 
Sbjct  319  -RLDAESKISDNLEMLFLST--------------KNDEREANLLYILQEVIKLPLATPEQ  363

Query  250  SRKFGTQMYEQQ  261
             ++      +  
Sbjct  364  IKQLNDNKADDS  375


>sp|B1JSR9|UVRB_YERPY UvrABC system protein B OS=Yersinia pseudotuberculosis 
serotype O:3 (strain YPIII) OX=502800 GN=uvrB 
PE=3 SV=1
Length=671

 Score = 88.7 bits (218),  Expect = 6e-17, Method: Composition-based stats.
 Identities = 42/254 (17%), Positives = 96/254 (38%), Gaps = 22/254 (9%)

Query  307  QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSN  366
            Q  Y      K ++  +   ++         L  L    P   +++ L   ++    ++ 
Sbjct  388  QTIYVSATPGKYELEKSGGDIIEQVVRPTGLLDPLIEVRPVATQVDDLLSEIR--IRAAI  445

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R ++ T T++ A  L  +L +               GA      + +   ++ E+I+ 
Sbjct  446  NERVLVTTLTKRMAEDLTDYLSE--------------HGAKVRYLHSDIDTVERVEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  + +  A 
Sbjct  492  LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAI  551

Query  482  VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR  540
            +  +  +  +++ +         +QA    + +       KI D+ Q        +   R
Sbjct  552  LYGDRITASMEKAIGETERRRAKQQAYNEERGIIPQGLNKKIGDILQLGQPSMRGKGKGR  611

Query  541  ENQRQQFPVEHVQL  554
             + +     ++  L
Sbjct  612  GSHKMADTTQYQSL  625


 Score = 33.6 bits (75),  Expect = 7.3, Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 21/65 (32%), Gaps = 7/65 (11%)

Query  9   EVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFR  68
           E +   L  + ++    TG+GKT   A V             ++L     L  Q   E +
Sbjct  26  EGLENGLAHQTLLGV--TGSGKTFTVANVIADL-----NRPTMILAPNKTLAAQLYGEMK  78

Query  69  RMLDG  73
                
Sbjct  79  EFFPD  83


>sp|Q66D62|UVRB_YERPS UvrABC system protein B OS=Yersinia pseudotuberculosis 
serotype I (strain IP32953) OX=273123 GN=uvrB 
PE=3 SV=1
Length=671

 Score = 88.7 bits (218),  Expect = 6e-17, Method: Composition-based stats.
 Identities = 42/254 (17%), Positives = 96/254 (38%), Gaps = 22/254 (9%)

Query  307  QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSN  366
            Q  Y      K ++  +   ++         L  L    P   +++ L   ++    ++ 
Sbjct  388  QTIYVSATPGKYELEKSGGDIIEQVVRPTGLLDPLIEVRPVATQVDDLLSEIR--IRAAI  445

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R ++ T T++ A  L  +L +               GA      + +   ++ E+I+ 
Sbjct  446  NERVLVTTLTKRMAEDLTDYLSE--------------HGAKVRYLHSDIDTVERVEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  + +  A 
Sbjct  492  LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAI  551

Query  482  VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR  540
            +  +  +  +++ +         +QA    + +       KI D+ Q        +   R
Sbjct  552  LYGDRITASMEKAIGETERRRAKQQAYNEERGIIPQGLNKKIGDILQLGQPSMRGKGKGR  611

Query  541  ENQRQQFPVEHVQL  554
             + +     ++  L
Sbjct  612  GSHKMADTTQYQSL  625


 Score = 33.6 bits (75),  Expect = 7.3, Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 21/65 (32%), Gaps = 7/65 (11%)

Query  9   EVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFR  68
           E +   L  + ++    TG+GKT   A V             ++L     L  Q   E +
Sbjct  26  EGLENGLAHQTLLGV--TGSGKTFTVANVIADL-----NRPTMILAPNKTLAAQLYGEMK  78

Query  69  RMLDG  73
                
Sbjct  79  EFFPD  83


>sp|B2K8T5|UVRB_YERPB UvrABC system protein B OS=Yersinia pseudotuberculosis 
serotype IB (strain PB1/+) OX=502801 GN=uvrB 
PE=3 SV=1
Length=671

 Score = 88.7 bits (218),  Expect = 6e-17, Method: Composition-based stats.
 Identities = 42/254 (17%), Positives = 96/254 (38%), Gaps = 22/254 (9%)

Query  307  QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSN  366
            Q  Y      K ++  +   ++         L  L    P   +++ L   ++    ++ 
Sbjct  388  QTIYVSATPGKYELEKSGGDIIEQVVRPTGLLDPLIEVRPVATQVDDLLSEIR--IRAAI  445

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R ++ T T++ A  L  +L +               GA      + +   ++ E+I+ 
Sbjct  446  NERVLVTTLTKRMAEDLTDYLSE--------------HGAKVRYLHSDIDTVERVEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  + +  A 
Sbjct  492  LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAI  551

Query  482  VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR  540
            +  +  +  +++ +         +QA    + +       KI D+ Q        +   R
Sbjct  552  LYGDRITASMEKAIGETERRRAKQQAYNEERGIIPQGLNKKIGDILQLGQPSMRGKGKGR  611

Query  541  ENQRQQFPVEHVQL  554
             + +     ++  L
Sbjct  612  GSHKMADTTQYQSL  625


 Score = 33.6 bits (75),  Expect = 7.3, Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 21/65 (32%), Gaps = 7/65 (11%)

Query  9   EVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFR  68
           E +   L  + ++    TG+GKT   A V             ++L     L  Q   E +
Sbjct  26  EGLENGLAHQTLLGV--TGSGKTFTVANVIADL-----NRPTMILAPNKTLAAQLYGEMK  78

Query  69  RMLDG  73
                
Sbjct  79  EFFPD  83


>sp|A7FKM4|UVRB_YERP3 UvrABC system protein B OS=Yersinia pseudotuberculosis 
serotype O:1b (strain IP 31758) OX=349747 GN=uvrB 
PE=3 SV=1
Length=671

 Score = 88.7 bits (218),  Expect = 6e-17, Method: Composition-based stats.
 Identities = 42/254 (17%), Positives = 96/254 (38%), Gaps = 22/254 (9%)

Query  307  QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSN  366
            Q  Y      K ++  +   ++         L  L    P   +++ L   ++    ++ 
Sbjct  388  QTIYVSATPGKYELEKSGGDIIEQVVRPTGLLDPLIEVRPVATQVDDLLSEIR--IRAAI  445

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R ++ T T++ A  L  +L +               GA      + +   ++ E+I+ 
Sbjct  446  NERVLVTTLTKRMAEDLTDYLSE--------------HGAKVRYLHSDIDTVERVEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  + +  A 
Sbjct  492  LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAI  551

Query  482  VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR  540
            +  +  +  +++ +         +QA    + +       KI D+ Q        +   R
Sbjct  552  LYGDRITASMEKAIGETERRRAKQQAYNEERGIIPQGLNKKIGDILQLGQPSMRGKGKGR  611

Query  541  ENQRQQFPVEHVQL  554
             + +     ++  L
Sbjct  612  GSHKMADTTQYQSL  625


 Score = 33.6 bits (75),  Expect = 7.3, Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 21/65 (32%), Gaps = 7/65 (11%)

Query  9   EVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFR  68
           E +   L  + ++    TG+GKT   A V             ++L     L  Q   E +
Sbjct  26  EGLENGLAHQTLLGV--TGSGKTFTVANVIADL-----NRPTMILAPNKTLAAQLYGEMK  78

Query  69  RMLDG  73
                
Sbjct  79  EFFPD  83


>sp|Q31ES7|UVRB_HYDCU UvrABC system protein B OS=Hydrogenovibrio 
crunogenus (strain DSM 25203 / XCL-2) OX=317025 GN=uvrB PE=3 
SV=1
Length=678

 Score = 88.7 bits (218),  Expect = 6e-17, Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 84/197 (43%), Gaps = 21/197 (11%)

Query  349  PKLEMLEKILQRQ-FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG  407
            P L  ++ +L           R ++ T T++ A +L  +L++       ++R + L    
Sbjct  426  PALTQVDDLLGEIRLRVEKEERVLVTTLTKRMAENLTEYLEEH------NVRVRYL----  475

Query  408  NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNE  462
                 + +   ++ E+I+  + G  ++LV  ++  EGLDIP  ++V          L ++
Sbjct  476  ----HSDIDTVERIEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSD  531

Query  463  ISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAV-AAVQKMDQAEYQAK  521
             S++Q  GRA  + +  A +  +   +  ++ I+E      +Q      Q +   +   K
Sbjct  532  RSLIQTIGRAARNVAGKAILYADKITKSMQKAIDETERRRAKQIQHNTEQGITPQKLNKK  591

Query  522  IRDLQQAALTKRAAQAA  538
            I D+ + +       A+
Sbjct  592  ITDILEDSPYAPKPGAS  608


>sp|A8F0V9|UVRB_RICM5 UvrABC system protein B OS=Rickettsia massiliae 
(strain Mtu5) OX=416276 GN=uvrB PE=3 SV=1
Length=661

 Score = 88.3 bits (217),  Expect = 6e-17, Method: Composition-based stats.
 Identities = 40/216 (19%), Positives = 81/216 (38%), Gaps = 27/216 (13%)

Query  346  PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
            P   ++E L   +Q     +   R ++ T T++ A  L  +LQ+ +              
Sbjct  426  PATNQIEDLISEIQTT--IAKGFRVLVTTLTKKMAEDLTAYLQELK--------------  469

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLT  460
               S   +H+   ++ E+++  + GT+++LV  ++  EGLDIP C +V          L 
Sbjct  470  YKTSYLHSHVHTLERIEILRDLRQGTIDILVGINLLREGLDIPECGLVAILDADKEGFLR  529

Query  461  NEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA  520
            +E+S++Q  GRA  +      +  +   ++ + +     ETL  + +             
Sbjct  530  SEVSLIQTIGRAARNSEGRVILYAD---KMTKSIDKAVSETLRRRQIQQEYNAKHGIIPK  586

Query  521  KIRDLQQAALTKRAAQAAQRENQRQ---QFPVEHVQ  553
             I     A        +   + Q       P +   
Sbjct  587  TINRTIHALAEFEKIDSKLDKKQAHTLFDNPAKLKT  622


>sp|B2A713|UVRB_NATTJ UvrABC system protein B OS=Natranaerobius 
thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) 
OX=457570 GN=uvrB PE=3 SV=1
Length=658

 Score = 88.3 bits (217),  Expect = 6e-17, Method: Composition-based stats.
 Identities = 43/243 (18%), Positives = 95/243 (39%), Gaps = 23/243 (9%)

Query  322  CAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAH  381
                R++         +       P   +++ L   + +   +  + R ++ T T++ A 
Sbjct  401  EHSERIVEQIIRPTGLVDPETEVRPVKGQIDDLYSEINK--RTDRNERVLVTTLTKKMAE  458

Query  382  SLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVA  441
             L  +L++              +G       + +   ++ E+I+  + G  ++LV  ++ 
Sbjct  459  DLTDYLRE--------------MGIRVRYMHSEIDTLERMEIIRDLRLGKFDVLVGINLL  504

Query  442  EEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAFVATEGSRELKRELIN  496
             EGLD+P  ++V          L +E S++Q  GRA  + +    +  +   +  R  I+
Sbjct  505  REGLDLPEVSLVAILDADKEGYLRDERSLIQTMGRAARNVNGRVIMYGDAITDSMRRAID  564

Query  497  EALETLMEQA-VAAVQKMDQAEYQAKIRDLQQAAL-TKRAAQAAQRENQRQQFPVEHVQL  554
            E      +Q    A   +     Q K+ D+ +A    +   +AA  EN ++    E  +L
Sbjct  565  ETNRRREKQIEFNARHNITPQTVQKKVHDVIEATRSAEDETEAATPENIQEMSAKERKEL  624

Query  555  LCI  557
            +  
Sbjct  625  IAK  627


>sp|Q7WK66|UVRB_BORBR UvrABC system protein B OS=Bordetella bronchiseptica 
(strain ATCC BAA-588 / NCTC 13252 / RB50) OX=257310 
GN=uvrB PE=3 SV=1
Length=675

 Score = 88.3 bits (217),  Expect = 7e-17, Method: Composition-based stats.
 Identities = 81/564 (14%), Positives = 174/564 (31%), Gaps = 114/564 (20%)

Query  26   TGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRR----------------  69
            TG+GKT   A +  R      G   +VL     L  Q   E R                 
Sbjct  50   TGSGKTYTMANMIARL-----GRPALVLAPNKTLAAQLYAEMREFFPRNAVEYFVSYYDY  104

Query  70   ------------MLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE  117
                         ++   ++      M   A    L R   +++ T   +       +  
Sbjct  105  YQPEAYVPTRDLFIEKDSSINEHIEQMRLSATKSLLERRDTVIVGTVSCIYGIGNPGDYH  164

Query  118  EHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASK  177
              V +      +      + ++ +  ++  QY        + + +V G T       + +
Sbjct  165  AMVLILRTGDRI------SRREVLARLVAMQYTRNDADFTRGVFRVRGETIDIFPAESPE  218

Query  178  LDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLM  237
            L   +        +L+ +  ++ +    +L   +  P   Y             + ++L 
Sbjct  219  LALRLTLFDDEIESLELFDPLTGR-VRQKLPRFTVYPGSHYVTPRETVLRAIETIKEELR  277

Query  238  DQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND--------  289
            +++   +   +L      ++ ++    L     L   +    Y+ HL             
Sbjct  278  ERLAQLIADGKLVE--AQRLEQRTRFDLEMLQELGFCKGIENYSRHLSGAAPGEPPPTLI  335

Query  290  ALLIHDTVRAVDA----LAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATH-  344
              L  D +  +D     +  L   Y  +   K  ++    RL +  D+R   L       
Sbjct  336  DYLPADALMFIDESHVTIGQLGGMYRGDRSRKETLVQYGFRLPSALDNRPLRLEEFEARM  395

Query  345  --------------------------------------GPENPKLEMLEKILQRQFSSSN  366
                                                   P + +++ L   + +   ++ 
Sbjct  396  RQCVFVSATPAAYEQEHADNVVEQVVRPTGLVDPIVEVRPAHTQVDDLLGEIHK--RAAL  453

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
              R ++ T T++ A  L  +L +               G       + +   ++ E+I+ 
Sbjct  454  QERVLVTTLTKRMAEDLTDFLSE--------------HGVRVRYLHSDIDTVERVEIIRD  499

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLDIP  ++V          L +E S++Q  GRA  + +  A 
Sbjct  500  LRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGRAI  559

Query  482  VATEGSRELKRELINEALETLMEQ  505
            +  +   +  R  I+E      +Q
Sbjct  560  LYADRITDSMRRAIDETERRRAKQ  583


>sp|Q68XG5|UVRB_RICTY UvrABC system protein B OS=Rickettsia typhi 
(strain ATCC VR-144 / Wilmington) OX=257363 GN=uvrB PE=3 
SV=1
Length=662

 Score = 88.3 bits (217),  Expect = 7e-17, Method: Composition-based stats.
 Identities = 37/222 (17%), Positives = 85/222 (38%), Gaps = 37/222 (17%)

Query  346  PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
            P   ++E L   +Q     +   R ++ T T++ A  L  +LQ  Q              
Sbjct  426  PATNQVEDLISEIQTT--ITKGLRILVTTLTKKMAEDLTSYLQDLQYKTY----------  473

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLT  460
                   +++   ++ E+++  + G +++LV  ++  EG+DIP C +V          L 
Sbjct  474  ----YLHSNIHTLERIEILRDLRQGNIDILVGINLLREGIDIPECGLVAILDADKEGFLR  529

Query  461  NEISMVQARGRARADQSVYAFVATEG---------SRELKRELINEA-------LETLME  504
            +E+S++Q  GRA  +      +  +          S  L+R  I +        +   + 
Sbjct  530  SEVSLIQTIGRAARNSRGKVILYADKMTKSIDKAVSETLRRRQIQQEYNKKYGIIPKTIN  589

Query  505  QAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQ  546
             A+  ++ +++       +      L   A   +  +  +++
Sbjct  590  SAIHTLESLEEIHDNKLDKKQTNTLLNNPAKLKSYMDKLKKE  631


>sp|Q4P3W3|DBP10_USTMA ATP-dependent RNA helicase DBP10 OS=Ustilago 
maydis (strain 521 / FGSC 9021) OX=237631 GN=DBP10 PE=3 
SV=1
Length=1154

 Score = 88.7 bits (218),  Expect = 7e-17, Method: Composition-based stats.
 Identities = 69/472 (15%), Positives = 136/472 (29%), Gaps = 96/472 (20%)

Query  26   TGAGKTRAAAYVAKRHLETVD----GAKVVVLVNRVHLVTQHGEEFRRMLDGRWTVTTLS  81
            TG+GKT A        L        G K ++L     L  Q     + +  G        
Sbjct  192  TGSGKTLAYLIPLINRLNGRHSPTFGIKSLILCPSRELAVQILRVGKEIARGWKADAGEG  251

Query  82   GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHTHKDTV  141
             D    A    +    +                 +E+   ++    +V+           
Sbjct  252  QDSRGEAIRWAIIVGGE---------------SLDEQFGIMSNNPDVVI-----------  285

Query  142  YNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQ  201
                                      A+PG          ++  +++  +L +   +   
Sbjct  286  --------------------------ATPGR--------MLHLTVEMNLDLKSVEYVVFD  311

Query  202  NCCPQLQEHSQQPCKQ--YNLCHRRSQDPFGDLL-KKLMDQIHDHLEMPELSRKFGTQMY  258
                  +    +  ++    L   R    F   L KKL++     L+      +      
Sbjct  312  EADRLFEMGFAEQLEEMLLRLPPTRQTLLFSATLPKKLVEFTKAGLQANPKLVRLDADSK  371

Query  259  EQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALA-ALQDFYHREHVTK  317
                ++++   ++   +++    + LR      L     R +D  A   +D    +   +
Sbjct  372  ISADLRMA-FFSVKPSEKEAALLVLLRDVIGVPLGEQAARDLDEEAQFNEDASDNQADGQ  430

Query  318  TQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTR  377
                   RR       +   L +    G     LE+L              + IIF  T+
Sbjct  431  RSRGYGNRRAEFKGKTKDKHLGNKRKRGGPGGALELLPH------------QTIIFCATK  478

Query  378  QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA  437
                                +      G   S   + + Q  +   + +F+ G  +LL+ 
Sbjct  479  HHVE--------------YLLLLLTTTGYACSHIYSSLDQATRGIQMSRFRRGQNSLLIV  524

Query  438  TSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSR  488
            T VA  G+D+P    VV +       + V   GR ARA ++ +A+     + 
Sbjct  525  TDVAARGIDLPVLEHVVNFDFPPQPRTFVHRVGRTARAGRNGWAWSMCTNAE  576


>sp|Q83E18|UVRB_COXBU UvrABC system protein B OS=Coxiella burnetii 
(strain RSA 493 / Nine Mile phase I) OX=227377 GN=uvrB 
PE=3 SV=1
Length=672

 Score = 88.3 bits (217),  Expect = 8e-17, Method: Composition-based stats.
 Identities = 51/295 (17%), Positives = 106/295 (36%), Gaps = 29/295 (10%)

Query  300  VDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATH-GPENPKLEMLEKIL  358
             D    L         T       +   +     R   L        P   +++ L   +
Sbjct  379  FDEFEKLAPQTIFISATPGPYEEKQSDQVVELLVRPTGLIDPEIEVRPVATQVDDLLSEI  438

Query  359  QRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQR  418
            ++   ++ + R ++ T T++ A  L  +  +       ++R + L         + +   
Sbjct  439  KK--RAAQNERVLVTTLTKRMAEDLTEYFTEH------NVRVRYL--------HSDIDTV  482

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRAR  473
            ++ E+I+  + G  ++LV  ++  EGLDIP  ++V          L +E S++Q  GRA 
Sbjct  483  ERVEIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTMGRAA  542

Query  474  ADQSVYAFVATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTK  532
             +    A +  +  +  +KR +       + + A      +     Q  + ++ + A T 
Sbjct  543  RNVHGKAILYADRITDSMKRAMEEAERRRIAQSAYNEKHHITPKSIQKAVTEIIEGARTY  602

Query  533  RAAQAAQRENQRQQFPVEHVQLLCINCMVAVGHGSDLRKVEG-THHVNVNPNFSN  586
                     NQ Q    E  + + +          +LRK+E   +H   N  F  
Sbjct  603  TERGRFV--NQAQLIAEEEAKYIAMTPKQLA---KELRKLEEQMYHHARNLEFEE  652


>sp|A9NC09|UVRB_COXBR UvrABC system protein B OS=Coxiella burnetii 
(strain RSA 331 / Henzerling II) OX=360115 GN=uvrB PE=3 
SV=1
Length=672

 Score = 88.3 bits (217),  Expect = 8e-17, Method: Composition-based stats.
 Identities = 51/295 (17%), Positives = 106/295 (36%), Gaps = 29/295 (10%)

Query  300  VDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATH-GPENPKLEMLEKIL  358
             D    L         T       +   +     R   L        P   +++ L   +
Sbjct  379  FDEFEKLAPQTIFISATPGPYEEKQSDQVVELLVRPTGLIDPEIEVRPVATQVDDLLSEI  438

Query  359  QRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQR  418
            ++   ++ + R ++ T T++ A  L  +  +       ++R + L         + +   
Sbjct  439  KK--RAAQNERVLVTTLTKRMAEDLTEYFTEH------NVRVRYL--------HSDIDTV  482

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRAR  473
            ++ E+I+  + G  ++LV  ++  EGLDIP  ++V          L +E S++Q  GRA 
Sbjct  483  ERVEIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTMGRAA  542

Query  474  ADQSVYAFVATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTK  532
             +    A +  +  +  +KR +       + + A      +     Q  + ++ + A T 
Sbjct  543  RNVHGKAILYADRITDSMKRAMEEAERRRIAQSAYNEKHHITPKSIQKAVTEIIEGARTY  602

Query  533  RAAQAAQRENQRQQFPVEHVQLLCINCMVAVGHGSDLRKVEG-THHVNVNPNFSN  586
                     NQ Q    E  + + +          +LRK+E   +H   N  F  
Sbjct  603  TERGRFV--NQAQLIAEEEAKYIAMTPKQLA---KELRKLEEQMYHHARNLEFEE  652


>sp|B6J1E8|UVRB_COXB2 UvrABC system protein B OS=Coxiella burnetii 
(strain CbuG_Q212) OX=434923 GN=uvrB PE=3 SV=1
Length=672

 Score = 88.3 bits (217),  Expect = 8e-17, Method: Composition-based stats.
 Identities = 51/295 (17%), Positives = 106/295 (36%), Gaps = 29/295 (10%)

Query  300  VDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATH-GPENPKLEMLEKIL  358
             D    L         T       +   +     R   L        P   +++ L   +
Sbjct  379  FDEFEKLAPQTIFISATPGPYEEKQSDQVVELLVRPTGLIDPEIEVRPVATQVDDLLSEI  438

Query  359  QRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQR  418
            ++   ++ + R ++ T T++ A  L  +  +       ++R + L         + +   
Sbjct  439  KK--RAAQNERVLVTTLTKRMAEDLTEYFTEH------NVRVRYL--------HSDIDTV  482

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRAR  473
            ++ E+I+  + G  ++LV  ++  EGLDIP  ++V          L +E S++Q  GRA 
Sbjct  483  ERVEIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTMGRAA  542

Query  474  ADQSVYAFVATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTK  532
             +    A +  +  +  +KR +       + + A      +     Q  + ++ + A T 
Sbjct  543  RNVHGKAILYADRITDSMKRAMEEAERRRIAQSAYNEKHHITPKSIQKAVTEIIEGARTY  602

Query  533  RAAQAAQRENQRQQFPVEHVQLLCINCMVAVGHGSDLRKVEG-THHVNVNPNFSN  586
                     NQ Q    E  + + +          +LRK+E   +H   N  F  
Sbjct  603  TERGRFV--NQAQLIAEEEAKYIAMTPKQLA---KELRKLEEQMYHHARNLEFEE  652


>sp|Q46323|UVRB_CLOPE UvrABC system protein B OS=Clostridium perfringens 
(strain 13 / Type A) OX=195102 GN=uvrB PE=3 SV=2
Length=659

 Score = 88.3 bits (217),  Expect = 8e-17, Method: Composition-based stats.
 Identities = 52/398 (13%), Positives = 137/398 (34%), Gaps = 30/398 (8%)

Query  167  TASPGTGGASKLDGAINHVLQLCANL-DTWCIMSPQN---CCPQLQEHSQQPCKQYNLC-  221
            + +P +  A+  +     +  +   L D   +++ ++      +L++ +    +      
Sbjct  241  SITPASHFAASEETLEKSIRVIEDELEDRLKVLTAEDKILEAQRLKQRTNYDIEMIREMG  300

Query  222  HRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYA  281
            + +  + +  +L   M        +      F   + E  V      A  AG + ++   
Sbjct  301  YCQGIENYSRILDGRMPGTPPQTLLDYFPEDFLMFIDESHVTLPQVRAMYAGDRSRKTSL  360

Query  282  LHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHL  341
            +           +  ++  +  + +              L     +          L  +
Sbjct  361  VEFGFRLPCAFDNRPLKFSEFESKINQVVFVSATPGEYELDHSEIVAEQIIRPTGLLDPV  420

Query  342  ATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQ  401
                P   +++ L   +QR        R +I T T++ A  L  +L+             
Sbjct  421  IEIRPIQGQIDDLYGEIQRT--VQRGFRVLITTLTKRMAEDLTKYLKD------------  466

Query  402  LLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG----  457
              +    +   + +   ++ ++I++ + G +++L+  ++  EGLDIP   +V        
Sbjct  467  --LNVKATYMHSDIDTLERMKIIRELRLGEVDVLIGINLLREGLDIPEVALVAILDADKE  524

Query  458  -LLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQ  515
              L +E S++Q  GR AR  +S     A   ++ + + +       +++        +  
Sbjct  525  GFLRSETSLIQTIGRAARNSESKVIMYADNITKSMDKSIKETERRRVIQMEYNEEHNITP  584

Query  516  AEYQAKIRDLQQAALTKRAA---QAAQRENQRQQFPVE  550
                  +RD+ +A          ++  ++  ++  PVE
Sbjct  585  TTVIKGVRDIIEATKVSEEKENYESEVKKAAKKDIPVE  622


>sp|Q6CM95|SUB2_KLULA ATP-dependent RNA helicase SUB2 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 
1267 / NRRL Y-1140 / WM37) OX=284590 GN=SUB2 PE=3 SV=1
Length=437

 Score = 87.2 bits (214),  Expect = 8e-17, Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 67/206 (33%), Gaps = 29/206 (14%)

Query  310  YHREHVTKTQILCAERRLLALFDDRKNELAHLATHG--------PENPKLEMLEKILQRQ  361
                 +++       R L    +   ++ A L  HG         E  K   L ++L   
Sbjct  236  MFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLDDL  295

Query  362  FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ  421
                   + IIF ++   A+ L   L                          HM Q ++ 
Sbjct  296  ----EFNQVIIFVKSTVRANELTKLLNASNFPAIT--------------VHGHMKQEERI  337

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQS---V  478
               + F++    + V+T V   G+DI   N+ + Y +       +   GRA    +    
Sbjct  338  ARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLA  397

Query  479  YAFVATEGSRELKRELINEALETLME  504
             + +++E   ++  ++       + E
Sbjct  398  ISMISSEDDEQVLAKIQERFDVKITE  423


 Score = 47.9 bits (112),  Expect = 2e-04, Method: Composition-based stats.
 Identities = 29/133 (22%), Positives = 52/133 (39%), Gaps = 10/133 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE  65
            Q   I  ++ G +++    +G GKT        + L+ V G   VVVL N   L  Q   
Sbjct  80   QQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVQGEVSVVVLCNARELAYQIRN  139

Query  66   EFRRMLD--GRWTVTTLSGDMGPRAGFGHLARCHDL---LICTAELLQMALTSPEEEEHV  120
            E+ R              G    +     L++   +   ++ T   L+    +   ++H+
Sbjct  140  EYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVATPGRLK----ALVRDKHI  195

Query  121  ELTVFSLIVVDEC  133
            +L+     V+DEC
Sbjct  196  DLSHVKNFVIDEC  208


>sp|P0CQ84|HAS1_CRYNJ ATP-dependent RNA helicase HAS1 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=HAS1 PE=3 SV=2
Length=544

 Score = 87.5 bits (215),  Expect = 8e-17, Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 49/129 (38%), Gaps = 15/129 (12%)

Query  356  KILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHM  415
             +L      +   + I+F  +  S           + L  +D+    L G          
Sbjct  302  MLLFTFLKKNLKKKVIVFFSSCNSVK------YHAELLNYIDVPVLDLHG--------KQ  347

Query  416  TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA  474
             Q+ +     +F +    +L+ T VA  GLDIP  + ++++    +    +   GR ARA
Sbjct  348  KQQKRTNTFFEFINAPAGILLCTDVAARGLDIPKVDWIIQFDPPDDPRDYIHRVGRTARA  407

Query  475  DQSVYAFVA  483
             +S  + + 
Sbjct  408  GKSGKSLLF  416


 Score = 56.7 bits (135),  Expect = 5e-07, Method: Composition-based stats.
 Identities = 31/136 (23%), Positives = 53/136 (39%), Gaps = 11/136 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHL------ETVDGAKVVVLVNRVHLV  60
            Q   I P L GK+++    TG+GKT  A  +    L      + V+G  V+++     L 
Sbjct  93   QARTIPPLLAGKDVLGAARTGSGKTM-AFLIPSVELLSTLRFKPVNGTGVIIISPTRELA  151

Query  61   TQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
             Q     + ++ G       L G    +A    L +  +L++ T   L   L + +    
Sbjct  152  LQIFGVAKELMQGHSQTFGVLMGGANRKAEADKLVKGVNLIVATPGRLLDHLQNTKGFVF  211

Query  120  VELTVFSLIVVDECHH  135
              L     +V+DE   
Sbjct  212  KNLKA---LVIDEADR  224


>sp|A9KCU2|UVRB_COXBN UvrABC system protein B OS=Coxiella burnetii 
(strain Dugway 5J108-111) OX=434922 GN=uvrB PE=3 SV=1
Length=672

 Score = 88.3 bits (217),  Expect = 8e-17, Method: Composition-based stats.
 Identities = 51/295 (17%), Positives = 106/295 (36%), Gaps = 29/295 (10%)

Query  300  VDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATH-GPENPKLEMLEKIL  358
             D    L         T       +   +     R   L        P   +++ L   +
Sbjct  379  FDEFEKLAPQTIFISATPGPYEEKQSDQVVELLVRPTGLIDPEIEVRPVATQVDDLLSEI  438

Query  359  QRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQR  418
            ++   ++ + R ++ T T++ A  L  +  +       ++R + L         + +   
Sbjct  439  KK--RAAQNERVLVTTLTKRMAEDLTEYFTEH------NVRVRYL--------HSDIDTV  482

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRAR  473
            ++ E+I+  + G  ++LV  ++  EGLDIP  ++V          L +E S++Q  GRA 
Sbjct  483  ERVEIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTMGRAA  542

Query  474  ADQSVYAFVATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTK  532
             +    A +  +  +  +KR +       + + A      +     Q  + ++ + A T 
Sbjct  543  RNVHGKAILYADRITDSMKRAMEEAERRRIAQSAYNEKHHITPKSIQKAVTEIIEGARTY  602

Query  533  RAAQAAQRENQRQQFPVEHVQLLCINCMVAVGHGSDLRKVEG-THHVNVNPNFSN  586
                     NQ Q    E  + + +          +LRK+E   +H   N  F  
Sbjct  603  TERGRFV--NQAQLIAEEESKYIAMTPKQLA---KELRKLEEQMYHHARNLEFEE  652


>sp|Q0TUD0|UVRB_CLOP1 UvrABC system protein B OS=Clostridium perfringens 
(strain ATCC 13124 / DSM 756 / JCM 1290 / NCIMB 6125 
/ NCTC 8237 / Type A) OX=195103 GN=uvrB PE=3 SV=1
Length=659

 Score = 87.9 bits (216),  Expect = 9e-17, Method: Composition-based stats.
 Identities = 53/398 (13%), Positives = 138/398 (35%), Gaps = 30/398 (8%)

Query  167  TASPGTGGASKLDGAINHVLQLCANL-DTWCIMSPQN---CCPQLQEHSQQPCKQYNLC-  221
            + +P +  A+  +     +  +   L D   +++ ++      +L++ +    +      
Sbjct  241  SITPASHFAASEETLEKSIRVIEDELEDRLKVLTAEDKILEAQRLKQRTNYDIEMIREMG  300

Query  222  HRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYA  281
            + +  + +  +L   M        +      F   + E  V      A  AG + ++   
Sbjct  301  YCQGIENYSRILDGRMPGTPPQTLLDYFPEDFLMFIDESHVTLPQVRAMYAGDRSRKTSL  360

Query  282  LHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHL  341
            +           +  ++  +  + +              L   + +          L  +
Sbjct  361  VEFGFRLPCAFDNRPLKFSEFESKINQVVFVSATPGEYELDHSKVVAEQIIRPTGLLDPV  420

Query  342  ATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQ  401
                P   +++ L   +QR        R +I T T++ A  L  +L+             
Sbjct  421  IEIRPIQGQIDDLYGEIQRT--VQRGFRVLITTLTKRMAEDLTKYLKD------------  466

Query  402  LLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG----  457
              +    +   + +   ++ ++I++ + G +++L+  ++  EGLDIP   +V        
Sbjct  467  --LNVKATYMHSDIDTLERMKIIRELRLGEVDVLIGINLLREGLDIPEVALVAILDADKE  524

Query  458  -LLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQ  515
              L +E S++Q  GR AR  +S     A   ++ + + +       +++        +  
Sbjct  525  GFLRSETSLIQTIGRAARNSESKVIMYADNITKSMDKSIKETERRRVIQMEYNEEHNITP  584

Query  516  AEYQAKIRDLQQAALTKRAAQAAQRENQ---RQQFPVE  550
                  +RD+ +A       +  + E +   ++  PVE
Sbjct  585  TTVIKGVRDIIEATKVSEEKENYEDEVKKAAKKDIPVE  622


>sp|Q9FT69|RQSIM_ARATH ATP-dependent DNA helicase Q-like SIM OS=Arabidopsis 
thaliana OX=3702 GN=RECQSIM PE=2 SV=1
Length=858

 Score = 88.3 bits (217),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 71/489 (15%), Positives = 159/489 (33%), Gaps = 78/489 (16%)

Query  2    ELRSYQWEVIMPALEGKNIIIWLPTGAGKTR---AAAYVAKRHLETVDGAKVVVLVNRVH  58
             LRS+Q E +   +  K+ ++   TG+GK+      A +         G  VVV+   + 
Sbjct  168  SLRSFQREALSTWVAHKDCLVLAATGSGKSLCFQIPALLT--------GKVVVVISPLIS  219

Query  59   LVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEE  118
            L+     +  R           SG +        +   + ++    E +   +   ++  
Sbjct  220  LMHDQCLKLSRH--KVSACFLGSGQLDNCIEEKAMQGMYQIIYVCPETVVRLIKPLQKLA  277

Query  119  HVELTVFSLIVVDECH------HTHKDTVYNVI---MSQYLELKLQRAQPLPQVLGLTAS  169
              +    +L  +DE H      H  +   Y  +      +    L+  +    ++ LTA+
Sbjct  278  --KTHGIALFAIDEAHCVSKWGHDFRPH-YRKLSVLRENFCASNLEFLEYDVPIMALTAT  334

Query  170  PGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQ-QPCKQYNLCHRRSQDP  228
                    +  +++   +             +       +HS+ +    Y    +   D 
Sbjct  335  ATVNVQEDILESLHLSKET----KIVLTSFFRPNLQFSVKHSRTKFASSYAKDFQNLVDL  390

Query  229  FGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQE-QRVYALHLRRY  287
            + +       ++       E    FG+   E       +           +  + + +  
Sbjct  391  YSEKKNSTGKKLAVISRESEEQTDFGSHDSENIHETDYDEDEEDQENSLAKKNSSNGKEL  450

Query  288  NDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPE  347
            ++A L  +T                + V    + C E   +   +  +  +         
Sbjct  451  SEAYLEDETD-------------IFQSVDDWDVACGEFCAMPSCELLEIPVP--------  489

Query  348  NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG  407
            + K + LE +             II+  TR+ + ++  +L                +G  
Sbjct  490  SEKQKDLEGL------------TIIYVPTRKESVNIAKYLCG--------------VGLK  523

Query  408  NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
             ++ +  + ++  ++V Q F D  L ++VAT     G+D  +   ++ YG L +  +  Q
Sbjct  524  AAAYNASLPKKHLRQVHQDFHDNKLQVVVATIAFGMGIDKKNVRKIIHYGWLQSLEAYYQ  583

Query  468  ARGRARADQ  476
              GRA  D 
Sbjct  584  EAGRAGRDG  592


>sp|A0KSP4|RAPA_SHESA RNA polymerase-associated protein RapA OS=Shewanella 
sp. (strain ANA-3) OX=94122 GN=rapA PE=3 SV=1
Length=968

 Score = 88.3 bits (217),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 75/452 (17%), Positives = 151/452 (33%), Gaps = 40/452 (9%)

Query  27   GAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGP  86
            G GKT  A  +  + L T    +V+++V    L  Q   E  R  + R++V      +  
Sbjct  179  GLGKTIEAGLIIHQQLLTGRAERVLIIVPD-TLRHQWLVEMLRRFNLRFSVFDEDRCVEA  237

Query  87   RAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHT--HKDTVYNV  144
             A   +      L+IC+       L   +  +      + L+VVDE HH    ++     
Sbjct  238  FADHDNPFYTEQLVICS----LELLRKKKRLDQALDADWDLLVVDEAHHLEWTEEAPSRA  293

Query  145  IMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCC  204
                  ++    ++ +P VL LTA+P         G  +H  +L   LD           
Sbjct  294  -----YQVVEALSEVVPGVLLLTATP------DQLGHESHFARL-RLLDPDRFYDYDAFL  341

Query  205  PQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVK  264
             +  E+S +                 D     + ++    ++    R    +  + ++ +
Sbjct  342  AE--ENSYKDVA-VAAEALAGDAKLSDAAINSLTELLSEKDIAPSIRLIQAEDIDSELQQ  398

Query  265  LSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAE  324
             + +  L  L ++      L R + A +     R  +A        +       +++   
Sbjct  399  AARSELLQELLDRHGTGRVLYRNSRASVKGFPKRIFNAYPHAMPEQYLTAARVNEMMGGR  458

Query  325  RRL---LALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAH  381
            + L    A     +        +     K +     L     S  S + +I      +A 
Sbjct  459  KSLEAQAAQALSPEKLYQEFEDNSASWWKFDPRVDWLIEFLKSHRSKKVLIIASGADTAL  518

Query  382  SLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF--QDGTLNLLVATS  439
            SL   L+ ++G+Q                    M+  ++ +    F  ++G    L+ + 
Sbjct  519  SLEEALRTREGIQATVFH-------------EGMSIIERDKAGAYFAQEEGGAQALICSE  565

Query  440  VAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
            +  EG +    + +V + L  N   + Q  GR
Sbjct  566  IGSEGRNFQFASHLVLFDLPLNPDLLEQRIGR  597


>sp|P0CQ82|DBP4_CRYNJ ATP-dependent RNA helicase DBP4 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=DBP4 PE=3 SV=2
Length=856

 Score = 88.3 bits (217),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 42/244 (17%), Positives = 77/244 (32%), Gaps = 43/244 (18%)

Query  288  NDALLIHDTVRAVDA--LAALQDFYHREHVTKTQILCAERRLLALFDDRKNE----LAHL  341
               L++ +  R +D   L AL+         +T       R   LF   +++    LA L
Sbjct  207  VKVLVLDEADRLLDLGFLPALKAIVSHFSPVQTAPGSRPSRQTLLFSATQSKDLAALAKL  266

Query  342  ATHGPEN----------------------PKLEMLEKILQRQFSSSNSPRGIIFTRTRQS  379
            + + P                          LE     L     S    +GI+F  + + 
Sbjct  267  SLYEPLYISCNKPGEEGVMPANLEQYYAVVPLERKLDALWGFVKSHLKMKGIVFVTSGKQ  326

Query  380  AHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATS  439
               +    ++               G           Q  + ++ Q+F      LL+ T 
Sbjct  327  VRFIFETFRRLHP------------GLPLMHLHGKQKQPTRLDIFQRFSSSKSALLICTD  374

Query  440  VAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR--ADQSVYAFVATEGSRELKRELIN  496
            VA  GLD P  + V++     +  + +   GR AR  +  +    +       +K     
Sbjct  375  VAARGLDFPAVDWVIQLDCPDDVDTYIHRVGRTARYQSAGTALTILCPSEEEGMKTRWGE  434

Query  497  EALE  500
            +A+E
Sbjct  435  KAIE  438


 Score = 49.8 bits (117),  Expect = 9e-05, Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 47/135 (35%), Gaps = 10/135 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAY------VAKRHLETVDGAKVVVLVNRVHLV  60
            Q   I PAL+ ++I+    TG+GKT  A        +       +DG   VV+     L 
Sbjct  87   QSLAIPPALQARDILGSAKTGSGKTL-AFLIPLLERLYLEKWGPMDGLGAVVISPTRELA  145

Query  61   TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
             Q   + R +         L     P           ++LI T   L   L S       
Sbjct  146  VQTFMQLRDIGKYHNFSAGLVIGGKPLKEEQERLGRMNILIATPGRLLQHLDSTVG---F  202

Query  121  ELTVFSLIVVDECHH  135
            + +   ++V+DE   
Sbjct  203  DSSAVKVLVLDEADR  217


>sp|Q6HBC2|UVRB_BACHK UvrABC system protein B OS=Bacillus thuringiensis 
subsp. konkukian (strain 97-27) OX=281309 GN=uvrB 
PE=3 SV=1
Length=658

 Score = 87.9 bits (216),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 35/199 (18%), Positives = 78/199 (39%), Gaps = 20/199 (10%)

Query  365  SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI  424
            + + R +I T T++ +  L  +L+               +G   +   + +   ++ E+I
Sbjct  443  AKNERVLITTLTKKMSEDLTDYLKD--------------VGIKVNYLHSEVKTLERIEII  488

Query  425  QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGR-ARADQSV  478
            +  + G  ++LV  ++  EGLDIP  ++V          L +E S++Q  GR AR +   
Sbjct  489  RDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNENGR  548

Query  479  YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA  538
                A   +R +   +        +++A      +     Q  +RD+ +A       +  
Sbjct  549  VIMYADRITRSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAEEPETY  608

Query  539  QRENQRQQFPVEHVQLLCI  557
            +    ++    E  + +  
Sbjct  609  EATPAKKMTKKEREKTIAK  627


>sp|Q8EJ93|RAPA_SHEON RNA polymerase-associated protein RapA OS=Shewanella 
oneidensis (strain ATCC 700550 / JCM 31522 / CIP 
106686 / LMG 19005 / NCIMB 14063 / MR-1) OX=211586 GN=rapA 
PE=3 SV=1
Length=968

 Score = 88.3 bits (217),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 75/452 (17%), Positives = 151/452 (33%), Gaps = 40/452 (9%)

Query  27   GAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGP  86
            G GKT  A  +  + L T    +V+++V    L  Q   E  R  + R++V      +  
Sbjct  179  GLGKTIEAGLIIHQQLLTCRAERVLIIVPD-TLRHQWLVEMLRRFNLRFSVFDEDRCVEA  237

Query  87   RAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHT--HKDTVYNV  144
             A   +      L+IC+       L   +  +      + L+VVDE HH    ++     
Sbjct  238  FADHDNPFYTEQLVICS----LELLRKKKRLDQALDADWDLLVVDEAHHLEWTEEAPSRA  293

Query  145  IMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCC  204
                  ++    ++ +P VL LTA+P         G  +H  +L   LD           
Sbjct  294  -----YQVVEALSEVVPGVLLLTATP------DQLGHESHFARL-RLLDPDRFYDYDAFL  341

Query  205  PQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVK  264
             +  E+S +            +    D     + ++    ++    R    +  + ++ +
Sbjct  342  AE--ENSYKDVA-IAAEALAGESKLSDYAINSLTELLSEKDIAPSIRLIQAEGIDSELQQ  398

Query  265  LSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAE  324
             + +  L  L ++      L R + A +     R  +A        +        ++   
Sbjct  399  AARSELLQELLDRHGTGRVLYRNSRASVKGFPKRIFNAYPHAMPEQYLTAARVNDMMGGR  458

Query  325  RRL---LALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAH  381
            + L    A     +        +     K +     L     S  S + +I      +A 
Sbjct  459  KSLEAKAAQALSPEKLYQEFEDNSASWWKFDPRVDWLIEFLKSHRSKKVLIIASGADTAL  518

Query  382  SLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF--QDGTLNLLVATS  439
            SL   L+ ++G+Q                    M+  ++ +    F  ++G    L+ + 
Sbjct  519  SLEEALRTREGIQATVFH-------------EGMSIIERDKAGAYFAQEEGGAQALICSE  565

Query  440  VAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
            +  EG +    + +V + L  N   + Q  GR
Sbjct  566  IGSEGRNFQFASHLVLFDLPLNPDLLEQRIGR  597


>sp|Q81X47|UVRB_BACAN UvrABC system protein B OS=Bacillus anthracis 
OX=1392 GN=uvrB PE=3 SV=1
Length=658

 Score = 87.9 bits (216),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 35/199 (18%), Positives = 78/199 (39%), Gaps = 20/199 (10%)

Query  365  SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI  424
            + + R +I T T++ +  L  +L+               +G   +   + +   ++ E+I
Sbjct  443  AKNERVLITTLTKKMSEDLTDYLKD--------------VGIKVNYLHSEVKTLERIEII  488

Query  425  QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGR-ARADQSV  478
            +  + G  ++LV  ++  EGLDIP  ++V          L +E S++Q  GR AR +   
Sbjct  489  RDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNENGR  548

Query  479  YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA  538
                A   +R +   +        +++A      +     Q  +RD+ +A       +  
Sbjct  549  VIMYADRITRSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAEEPETY  608

Query  539  QRENQRQQFPVEHVQLLCI  557
            +    ++    E  + +  
Sbjct  609  EATPAKKMTKKEREKTIAK  627


>sp|Q4HVW2|SPB4_GIBZE ATP-dependent rRNA helicase SPB4 OS=Gibberella 
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / 
NRRL 31084 / PH-1) OX=229533 GN=SPB4 PE=3 SV=1
Length=637

 Score = 87.5 bits (215),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 70/193 (36%), Gaps = 20/193 (10%)

Query  338  LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD  397
            L       P + KL  L ++L++        R I+F  T  +      + Q    L   +
Sbjct  268  LQMTYMVKPASQKLPALAELLRQL--PVRPQRSIVFLSTCAAVD----YFQHILPLILPE  321

Query  398  IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN-LLVATSVAEEGLDIPHCNVVVRY  456
                   G            + +++   KF       +L+ T +A  GLDIP  ++VV+ 
Sbjct  322  -------GFALVPLHGKHAAKVREKNFNKFLSSVSPTILLTTDLAARGLDIPQVDLVVQI  374

Query  457  GLLTNEISMVQARGRA-RADQSVYAFVA----TEGSRELKRELINEALETLMEQAVAAVQ  511
               ++    +   GRA RA +   A V      E       E+    +  L +  +   +
Sbjct  375  DAPSDPKVFIHRSGRAGRAGRKGLAVVMLHPGREEDYVQFLEIRKTPIAPLEKPTITTSE  434

Query  512  KMDQAEYQAKIRD  524
              D AE+  K RD
Sbjct  435  D-DAAEFAKKTRD  446


 Score = 42.1 bits (97),  Expect = 0.018, Method: Composition-based stats.
 Identities = 38/256 (15%), Positives = 81/256 (32%), Gaps = 57/256 (22%)

Query  7    QWEVIMPA-----LEGKNIIIWLPTGAGKTRAAAY--VAKRHLETVDGAK-----VVVLV  54
            Q   +  A     +  K++++   TG+GKT  A    + ++ L   +  K      +++ 
Sbjct  36   QMTPVQAATLPHFMGNKDVVVEAVTGSGKTL-AFLIPLVQKLLRLSEPTKKHHVAAIIVS  94

Query  55   NRVHLVTQHGEEFRRMLD------------------------GRWTVTTLSGDMGPRAGF  90
                L  Q      ++L                                L G        
Sbjct  95   PTRELAAQIHTVLMKLLQFHEASAEILPHLKDDDEKRPFTTVPAIVPQLLVGGTTTTVQD  154

Query  91   GHLARCH--DLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQ  148
                  H  ++LI +   L   ++SP    H   + F ++V+DE          + ++  
Sbjct  155  LRFFLRHSPNVLISSPGRLVELMSSP--HVHCPQSSFEVLVLDEA---------DRLLDL  203

Query  149  YLELKLQR---AQPLPQVLGL-TASPGTGGASKLDGAINHVLQLCANLDTW--CIMSPQN  202
              +  LQ+     P  +  GL +AS        +   + + +++   +      I+  + 
Sbjct  204  GFKPDLQKILSHLPKQRRTGLFSASVSEAVGEIIRVGLRNPVKIEVKVKIKGGGILEDRK  263

Query  203  CCPQL-QEHSQQPCKQ  217
                L   +  +P  Q
Sbjct  264  TPASLQMTYMVKPASQ  279


>sp|Q6FL17|SUB2_CANGA ATP-dependent RNA helicase SUB2 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=SUB2 PE=3 SV=1
Length=439

 Score = 86.8 bits (213),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 74/216 (34%), Gaps = 24/216 (11%)

Query  310  YHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPE--NPKLEM--LEKILQRQFSSS  365
                 +++       R L    +   ++ A L  HG +    KLE     + L +     
Sbjct  238  MFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLEEREKNRKLAQLLDDL  297

Query  366  NSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQ  425
               + IIF ++   A+ L   L                          HM Q ++    +
Sbjct  298  EFNQVIIFVKSTSRANELTKLLNASNFPAIT--------------VHGHMKQEERIARYK  343

Query  426  KFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQS---VYAFV  482
             F+D    + V+T V   G+DI   N+ + Y LL      +   GRA    +     +FV
Sbjct  344  AFKDFEKRICVSTDVFGRGIDIERINLAINYDLLNEADQYLHRVGRAGRFGTKGLAISFV  403

Query  483  ATEGSRELK---RELINEALETLMEQAVAAVQKMDQ  515
            + +   E+    +E  +  +    E+ +     ++ 
Sbjct  404  SNKEDEEVLSKIQERFDVKIAEFPEEGIDPSTYLNN  439


 Score = 48.6 bits (114),  Expect = 2e-04, Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 53/135 (39%), Gaps = 14/135 (10%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQ---  62
            Q   I  ++ G +++    +G GKT        + L+ V G   VVV+ N   L  Q   
Sbjct  82   QQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVSVVVICNARELAYQIRN  141

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHD----LLICTAELLQMALTSPEEEE  118
                F + +    T     G   P A    L +  D    +++ T   L+    +   ++
Sbjct  142  EYLRFSKYMPDVRTAVFYGG--TPIAKDAELLKNKDTAPHIVVATPGRLK----ALVRDK  195

Query  119  HVELTVFSLIVVDEC  133
             ++L+     V+DEC
Sbjct  196  MIDLSHVKNFVIDEC  210


>sp|P23128|DDX6_DROME ATP-dependent RNA helicase me31b OS=Drosophila 
melanogaster OX=7227 GN=me31B PE=1 SV=3
Length=459

 Score = 86.8 bits (213),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 50/342 (15%), Positives = 107/342 (31%), Gaps = 31/342 (9%)

Query  165  GLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRR  224
            G T +       ++D   +++  L         +     C +L +H            R 
Sbjct  107  GKTGAYCIPVLEQIDPTKDYIQALVMVPTRELALQTSQICIELAKHLDI---------RV  157

Query  225  SQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHL  284
                 G +LK  + +I+  +++   +      + +++V  +S    L   +  ++ +L  
Sbjct  158  MVTTGGTILKDDILRIYQKVQLIIATPGRILDLMDKKVADMSHCRILVLDEADKLLSLDF  217

Query  285  RRYNDALLIH-DTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLAT  343
            +   D +++       +   +A      +  + K   L     +  + +     +     
Sbjct  218  QGMLDHVILKLPKDPQILLFSATFPLTVKNFMEK--HLREPYEINLMEELTLKGVTQYYA  275

Query  344  HGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLL  403
               E  K+      L   FS     + IIF  + Q    L   + +              
Sbjct  276  FVQERQKV----HCLNTLFSKLQINQSIIFCNSTQRVELLAKKITE--------------  317

Query  404  IGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI  463
            +G         M Q  +  V   F+ G    LV + +   G+D+   NVV+ +       
Sbjct  318  LGYCCYYIHAKMAQAHRNRVFHDFRQGLCRNLVCSDLFTRGIDVQAVNVVINFDFPRMAE  377

Query  464  SMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLME  504
            + +   GR  R      A              I + L T ++
Sbjct  378  TYLHRIGRSGRFGHLGIAINLITYEDRFDLHRIEKELGTEIK  419


 Score = 49.8 bits (117),  Expect = 7e-05, Method: Composition-based stats.
 Identities = 36/167 (22%), Positives = 68/167 (41%), Gaps = 15/167 (9%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLE-TVDGAKVVVLVNRVHLVTQHGE  65
            Q   I  AL GK+++     G GKT A        ++ T D  + +V+V    L  Q  +
Sbjct  85   QEAAIPIALSGKDVLARAKNGTGKTGAYCIPVLEQIDPTKDYIQALVMVPTRELALQTSQ  144

Query  66   ---EFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
               E  + LD R  VT  +G    +     + +   L+I T   +   +     +    +
Sbjct  145  ICIELAKHLDIRVMVT--TGGTILKDDILRIYQKVQLIIATPGRILDLMDKKVAD----M  198

Query  123  TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS  169
            +   ++V+DE      D + ++     L+  + +    PQ+L  +A+
Sbjct  199  SHCRILVLDEA-----DKLLSLDFQGMLDHVILKLPKDPQILLFSAT  240


>sp|P0CQ85|HAS1_CRYNB ATP-dependent RNA helicase HAS1 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=HAS1 PE=3 SV=1
Length=607

 Score = 87.5 bits (215),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 49/129 (38%), Gaps = 15/129 (12%)

Query  356  KILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHM  415
             +L      +   + I+F  +  S           + L  +D+    L G          
Sbjct  365  MLLFTFLKKNLKKKVIVFFSSCNSVK------YHAELLNYIDVPVLDLHG--------KQ  410

Query  416  TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA  474
             Q+ +     +F +    +L+ T VA  GLDIP  + ++++    +    +   GR ARA
Sbjct  411  KQQKRTNTFFEFINAPAGILLCTDVAARGLDIPKVDWIIQFDPPDDPRDYIHRVGRTARA  470

Query  475  DQSVYAFVA  483
             +S  + + 
Sbjct  471  GKSGKSLLF  479


 Score = 56.3 bits (134),  Expect = 6e-07, Method: Composition-based stats.
 Identities = 31/136 (23%), Positives = 53/136 (39%), Gaps = 11/136 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHL------ETVDGAKVVVLVNRVHLV  60
            Q   I P L GK+++    TG+GKT  A  +    L      + V+G  V+++     L 
Sbjct  156  QARTIPPLLAGKDVLGAARTGSGKTM-AFLIPSVELLSTLRFKPVNGTGVIIISPTRELA  214

Query  61   TQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
             Q     + ++ G       L G    +A    L +  +L++ T   L   L + +    
Sbjct  215  LQIFGVAKELMQGHSQTFGVLMGGANRKAEADKLVKGVNLIVATPGRLLDHLQNTKGFVF  274

Query  120  VELTVFSLIVVDECHH  135
              L     +V+DE   
Sbjct  275  KNLKA---LVIDEADR  287


>sp|Q757I6|MAK5_EREGS ATP-dependent RNA helicase MAK5 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=MAK5 PE=3 SV=1
Length=752

 Score = 87.9 bits (216),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 56/351 (16%), Positives = 111/351 (32%), Gaps = 37/351 (11%)

Query  156  RAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPC  215
            R     + +GL  +P    A ++   +  V  L    + + IM         ++      
Sbjct  244  RDDTDSRPIGLIFTPTRELAHQVTDHLREVGALLVKRNPYSIMCLTGGLSIQKQERLLKY  303

Query  216  KQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQ  275
            K        +   F +LL+K    I    ++  L      ++ +    +  E       +
Sbjct  304  KGSARVVVATPGRFLELLEKDQTLIDRFAKVDTLVLDEADRLLQDGHFEEFERILKHLSR  363

Query  276  EQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRK  335
             ++    + +++    +I+    ++D    L +   ++          E  L  L     
Sbjct  364  ARKF--TNGKKHGWKTMIYSATFSLDYFNKLSNTSWKKMKKAPSENEMEEVLKHLMTKIP  421

Query  336  NELAHLATHGPENPKL-----EMLEKIL-------QRQFSSSNSPRGIIFTRTRQSAHSL  383
                 L        K+     E L + L          F +      ++F     S   L
Sbjct  422  FRGKPLIIDTNPEQKVASQIKESLIECLPTERDLYVYYFVTLYPGTTLVFCNAIDSVKKL  481

Query  384  LLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD--------GTLNLL  435
              +L   +                     + M Q+++ + ++KFQ+            +L
Sbjct  482  NAYLHNLK--------------ISAFQIHSSMLQKNRLKSLEKFQEQAKKNQALNKPTVL  527

Query  436  VATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATE  485
            +A+ VA  GLDIP    V+ Y L  +    +   GR ARA+    A     
Sbjct  528  IASDVAARGLDIPGIQHVIHYHLPRSADVYIHRSGRTARAENEGVAVTICS  578


 Score = 51.7 bits (122),  Expect = 2e-05, Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 48/145 (33%), Gaps = 15/145 (10%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTR---AAAY--VAKRHLETVDGAKVVVLVNRVHLVT  61
            Q + I  AL+G +I+    TG+GKT          + +   ++     +        L  
Sbjct  207  QLQSIPKALDGHDIMGKASTGSGKTLAYGIPILEGIIRDDTDSRPIGLIF--TPTRELAH  264

Query  62   QHGEEFRRMLDG-----RWTVTTLSGDMGPRAGFG--HLARCHDLLICTAELLQMALTSP  114
            Q  +  R +         +++  L+G +  +             +++ T       L   
Sbjct  265  QVTDHLREVGALLVKRNPYSIMCLTGGLSIQKQERLLKYKGSARVVVATPGRFLE-LLEK  323

Query  115  EEEEHVELTVFSLIVVDECHHTHKD  139
            ++           +V+DE     +D
Sbjct  324  DQTLIDRFAKVDTLVLDEADRLLQD  348


>sp|A7IB61|HELS_METB6 ATP-dependent DNA helicase Hel308 OS=Methanoregula 
boonei (strain DSM 21154 / JCM 14090 / 6A8) OX=456442 
GN=hel308 PE=3 SV=1
Length=723

 Score = 87.5 bits (215),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 91/227 (40%), Gaps = 17/227 (7%)

Query  7    QWEVIMPAL-EGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q   +   L +GKN+++ +PT +GKT  A     RH+   +G K + +V    L ++  E
Sbjct  28   QAACVERGLLDGKNLLVAIPTASGKTLIAEMAMHRHI--ANGGKCLYIVPLKALASEKYE  85

Query  66   EFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF  125
            EF    +    V   +GD+  R         +D+++ T+E +   L +        +   
Sbjct  86   EF---GNKGVKVGLSTGDLDRR---DDALGKNDIIVATSEKVDSLLRNGARW----IPDI  135

Query  126  SLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHV  185
            +L+V+DE H    D+       + +  K++   P  Q++GL+A+ G             V
Sbjct  136  TLVVIDEIHLI--DSPDRGPTLEMVIAKMRSKNPGMQLIGLSATIGNPKVLAGWLDAELV  193

Query  186  LQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDL  232
                  +D    +   +   Q  E   +P KQ +  +         +
Sbjct  194  TSSWRPVDLRQGVFY-DNRIQFAERM-RPVKQVSKNYDDLNLCLDTI  238


 Score = 41.3 bits (95),  Expect = 0.032, Method: Composition-based stats.
 Identities = 24/175 (14%), Positives = 61/175 (35%), Gaps = 30/175 (17%)

Query  365  SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRA-----------------QLLIGAG  407
            +   + ++F  +R++A +           +   + A                    +  G
Sbjct  239  AEGGQCLVFVSSRRNAEAFAKRAAGAIKSEDAALAACAERLLEGTPTEMVKTLAACVAKG  298

Query  408  NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV----RYG------  457
             +     ++++++  V + F+   L  + +T     GL++P   V++    R+       
Sbjct  299  AAFHHAGLSRKERSIVEEAFRKNLLKCISSTPTLAAGLNLPARRVIIRDYLRFSAGEGMQ  358

Query  458  --LLTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAV  510
               ++    M    GR R D    A +  + + ++  EL    +E   E   + +
Sbjct  359  PIPVSEYRQMAGRAGRPRLDPYGEAVLIAKEAEQVP-ELFEVYIEAEAEDVHSRI  412


>sp|Q49VV6|UVRB_STAS1 UvrABC system protein B OS=Staphylococcus 
saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 
20229 / NCIMB 8711 / NCTC 7292 / S-41) OX=342451 GN=uvrB PE=3 
SV=1
Length=660

 Score = 87.5 bits (215),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 89/608 (15%), Positives = 203/608 (33%), Gaps = 105/608 (17%)

Query  26   TGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDG------------  73
            TG GKT   + V K+      G   +++ +   L  Q   EF+                 
Sbjct  42   TGTGKTFTMSNVIKQV-----GKPTLIIAHNKTLAGQLYSEFKEFFPENRVEYFVSYYDY  96

Query  74   -------RWTVTTLSGDMGPRAGFGHL--------ARCHDLLICTAELLQMALTSPEEEE  118
                     T T +  D         L            D+++  +      L +PEE  
Sbjct  97   YQPEAYVPSTDTFIEKDASINDEIDQLRHSATSALFERDDVIVIASVSCIYGLGNPEEYR  156

Query  119  HVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLG-----LTASPGTG  173
             + +++ + + +D      K     ++  QY    +   +   +V G       AS    
Sbjct  157  DLVVSIRAGMEMDRSELLKK-----LVDVQYTRNDIDFRRGTFRVRGDVVEIFPAS-REE  210

Query  174  GASKLDGAINHVLQL-CANLDTWCIMSPQNCCPQL-QEHSQQPCKQYNLCHRRSQDPFGD  231
               +++   + + ++   N  T  ++  ++        H     ++     +R ++   +
Sbjct  211  MCIRVEFFGDEIDRIREVNYLTGEVLRERDHFAIFPASHFVTREEKMKSAIQRIENELEE  270

Query  232  LLKKL-MDQIHDHLEMPELSRKFGTQMYEQQVVK--LSEAAALAGLQEQRVYALHLRRYN  288
             L +L  +      +  E    +  +M  +      +   +    L+        L  Y 
Sbjct  271  RLAELNAENKLLEAQRLEQRTNYDLEMMREMGFCSGIENYSVHLTLRPMGSTPYTLLDYF  330

Query  289  DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHL-------  341
                +     +   L  ++  Y+ +   K  ++    RL +  D+R  +           
Sbjct  331  GDDWLVMIDESHVTLPQIRGMYNGDRARKQVLVDHGFRLPSALDNRPLKFEEFEEKTKQL  390

Query  342  ----ATHGP-------------------ENPKLEM------LEKILQR-QFSSSNSPRGI  371
                AT GP                    +PK+E+      ++ +L   Q     + R +
Sbjct  391  VYVSATPGPFELEHTDEMVQQIIRPTGLLDPKIEVRPTENQIDDLLGEIQDRIDRNERVL  450

Query  372  IFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGT  431
            + T T++ +  L ++L++               G   +   + +   ++ E+I+  + GT
Sbjct  451  VTTLTKKMSEDLTIYLKEA--------------GIKVNYLHSEIKTLERIEIIRDLRMGT  496

Query  432  LNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAFVATEG  486
             +++V  ++  EG+DIP  ++VV         L ++ S+VQ  GRA  +      +  + 
Sbjct  497  YDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSQRSLVQTIGRAARNSRGEVIMYGDK  556

Query  487  SRELKRELINE-ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQ  545
              +  R  ++E      +++A      +       KI D+  A +        Q+    +
Sbjct  557  ITDSMRYALDETERRRTIQEAYNEKHNITPTTINKKIHDVISATVENDETNEQQQTEVPK  616

Query  546  QFPVEHVQ  553
            +   +  +
Sbjct  617  KMTKKERE  624


>sp|Q631I6|UVRB_BACCZ UvrABC system protein B OS=Bacillus cereus 
(strain ZK / E33L) OX=288681 GN=uvrB PE=3 SV=1
Length=658

 Score = 87.5 bits (215),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 35/199 (18%), Positives = 78/199 (39%), Gaps = 20/199 (10%)

Query  365  SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI  424
            + + R +I T T++ +  L  +L+               +G   +   + +   ++ E+I
Sbjct  443  AKNERVLITTLTKKMSEDLTDYLKD--------------VGIKVNYLHSEVKTLERIEII  488

Query  425  QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGR-ARADQSV  478
            +  + G  ++LV  ++  EGLDIP  ++V          L +E S++Q  GR AR +   
Sbjct  489  RDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNENGR  548

Query  479  YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA  538
                A   +R +   +        +++A      +     Q  +RD+ +A       +  
Sbjct  549  VIMYADRITRSMGIAIEETQRRRSIQEAYNEEYGITPKTIQKGVRDVIRATTAAEEPETY  608

Query  539  QRENQRQQFPVEHVQLLCI  557
            +    ++    E  + +  
Sbjct  609  EATPAKKMTKKEREKTIAK  627


>sp|A3AVH5|RH13_ORYSJ DEAD-box ATP-dependent RNA helicase 13 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os04g0510400 PE=2 
SV=2
Length=832

 Score = 87.5 bits (215),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 42/236 (18%), Positives = 81/236 (34%), Gaps = 25/236 (11%)

Query  313  EHVTKTQILCAERRLLALFDDR--KNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRG  370
            E ++K   +     ++ L        +L        ++ K   L  IL          R 
Sbjct  458  EALSKQARMKPNAEIVDLTKASILPEKLEESFIECSDDDKDAYLYYILSVH----GQGRT  513

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            IIF  +  +   L   L+              ++G    +    M QR + + + +F++ 
Sbjct  514  IIFCTSIAALRHLSSILR--------------VLGINVLTNHAQMQQRARMKAVDRFRES  559

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRE  489
              ++LVAT     G+D      V+ Y L  +    +   GR AR   +  +      + +
Sbjct  560  ENSILVATDGFARGMDFDDVRTVIHYQLPHSTDVYIHRSGRTARKSMAGCSIALISPADK  619

Query  490  LKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQ  545
             K   + ++L     Q       +D A   A +  L  A    +  +   +EN  +
Sbjct  620  AKFYSLCKSLSKENLQQFP----VDHAYMPAVMNRLTLARQIDKITRKNSQENANK  671


 Score = 51.0 bits (120),  Expect = 3e-05, Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 54/145 (37%), Gaps = 23/145 (16%)

Query  13   PALEGKNIIIWLPTGAGKTRAAAY-VAKRHLETVDGA--------------------KVV  51
             A +GK++I    TG+GKT A    + +R LE  + A                    + +
Sbjct  232  AAHQGKDVIGAAETGSGKTLAFGLPILQRLLEEQEKAMRLSREDESTQDENSRESPLRAL  291

Query  52   VLVNRVHLVTQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMA  110
            +L     L  Q  +  +      R  V  + G +        L R  ++++ T   L   
Sbjct  292  ILTPTRELAKQVCDHLKEAAKFLRIQVVPIVGGLSMEKQERLLKRKPEIVVGTPGRLWEL  351

Query  111  LTSPEEEEHVELTVFSLIVVDECHH  135
            +++  +   ++L   S  V+DE   
Sbjct  352  MSTGNQH-LIKLHSLSFFVLDEADR  375


>sp|A2XVF7|RH13_ORYSI DEAD-box ATP-dependent RNA helicase 13 OS=Oryza 
sativa subsp. indica OX=39946 GN=OsI_016050 PE=3 SV=2
Length=832

 Score = 87.5 bits (215),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 42/236 (18%), Positives = 81/236 (34%), Gaps = 25/236 (11%)

Query  313  EHVTKTQILCAERRLLALFDDR--KNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRG  370
            E ++K   +     ++ L        +L        ++ K   L  IL          R 
Sbjct  458  EALSKQARMKPNAEIVDLTKASILPEKLEESFIECSDDDKDAYLYYILSVH----GQGRT  513

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            IIF  +  +   L   L+              ++G    +    M QR + + + +F++ 
Sbjct  514  IIFCTSIAALRHLSSILR--------------VLGINVLTNHAQMQQRARMKAVDRFRES  559

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRE  489
              ++LVAT     G+D      V+ Y L  +    +   GR AR   +  +      + +
Sbjct  560  ENSILVATDGFARGMDFDDVRTVIHYQLPHSTDVYIHRSGRTARKSMAGCSIALISPADK  619

Query  490  LKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQ  545
             K   + ++L     Q       +D A   A +  L  A    +  +   +EN  +
Sbjct  620  AKFYSLCKSLSKENLQQFP----VDHAYMPAVMNRLTLARQIDKITRKNSQENANK  671


 Score = 51.0 bits (120),  Expect = 3e-05, Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 54/145 (37%), Gaps = 23/145 (16%)

Query  13   PALEGKNIIIWLPTGAGKTRAAAY-VAKRHLETVDGA--------------------KVV  51
             A +GK++I    TG+GKT A    + +R LE  + A                    + +
Sbjct  232  AAHQGKDVIGAAETGSGKTLAFGLPILQRLLEEQEKAMRLSREDESTQDENSRESPLRAL  291

Query  52   VLVNRVHLVTQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMA  110
            +L     L  Q  +  +      R  V  + G +        L R  ++++ T   L   
Sbjct  292  ILTPTRELAKQVCDHLKEAAKFLRIQVVPIVGGLSMEKQERLLKRKPEIVVGTPGRLWEL  351

Query  111  LTSPEEEEHVELTVFSLIVVDECHH  135
            +++  +   ++L   S  V+DE   
Sbjct  352  MSTGNQH-LIKLHSLSFFVLDEADR  375


>sp|B6J8A0|UVRB_COXB1 UvrABC system protein B OS=Coxiella burnetii 
(strain CbuK_Q154) OX=434924 GN=uvrB PE=3 SV=1
Length=672

 Score = 87.5 bits (215),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 51/295 (17%), Positives = 106/295 (36%), Gaps = 29/295 (10%)

Query  300  VDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATH-GPENPKLEMLEKIL  358
             D    L         T       +   +     R   L        P   +++ L   +
Sbjct  379  FDEFEKLAPQTIFISATPGPYEEKQSDQVVELLVRPTGLIDPEIEVRPVATQVDDLLSEI  438

Query  359  QRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQR  418
            ++   ++ + R ++ T T++ A  L  +  +       ++R + L         + +   
Sbjct  439  KK--RAAQNERVLVTTLTKRMAEDLTEYFTEH------NVRVRYL--------HSDIDTV  482

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRAR  473
            ++ E+I+  + G  ++LV  ++  EGLDIP  ++V          L +E S++Q  GRA 
Sbjct  483  ERVEIIRDLRLGVFDMLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTMGRAA  542

Query  474  ADQSVYAFVATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTK  532
             +    A +  +  +  +KR +       + + A      +     Q  + ++ + A T 
Sbjct  543  RNVHGKAILYADRITDSMKRAMEEAERRRIAQSAYNEKHHITPKSIQKAVTEIIEGARTY  602

Query  533  RAAQAAQRENQRQQFPVEHVQLLCINCMVAVGHGSDLRKVEG-THHVNVNPNFSN  586
                     NQ Q    E  + + +          +LRK+E   +H   N  F  
Sbjct  603  TERGRFV--NQAQLIAEEEAKYIAMTPKQLA---KELRKLEEQMYHHARNLEFEE  652


>sp|Q0DBU5|RH31_ORYSJ DEAD-box ATP-dependent RNA helicase 31 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os06g0526600 PE=3 
SV=2
Length=547

 Score = 86.8 bits (213),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 30/190 (16%), Positives = 69/190 (36%), Gaps = 27/190 (14%)

Query  295  DTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEML  354
            D VR V  +A  +D      V +              ++  +++  +    P + +  +L
Sbjct  277  DEVRQVCHIAMKRDLEFVNTVEEGS------------EETHSQVKQMHVVAPLDKQFSIL  324

Query  355  EKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH  414
              +L    S +   + I+F  T +    +   L + +                     + 
Sbjct  325  YGLLTDHISENVDYKVIVFCTTAKVTSLVAELLSELK--------------LNVREIHSR  370

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR  473
              Q  +  + ++F++    +LV++ V+  G+D P+  +VV+ G+ T+    +   GR  R
Sbjct  371  KPQSYRTRISKEFKESKGLILVSSDVSARGVDYPNVTLVVQMGVPTDREQYIHRLGRTGR  430

Query  474  ADQSVYAFVA  483
                    + 
Sbjct  431  RGNEGSGILL  440


 Score = 50.2 bits (118),  Expect = 5e-05, Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 46/135 (34%), Gaps = 17/135 (13%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRHL----------ETVDGAKVVVLVNRVHLVTQHG  64
            L+GK+++    TG GKT  A  +    +          +      VVV+     L  Q  
Sbjct  114  LKGKDVLAKAKTGTGKT-VAFLLPAIEVVSKLPPIDCDKKRPPISVVVVCPTRELADQAA  172

Query  65   EEFRRMLD--GRWTVTTLSG--DMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
             E  ++L       V  + G   M       H      +L+ T   L+  + +       
Sbjct  173  AEANKLLKFHPSIGVQLVIGGTRMALEQKRMH-TNPCQILVATPGRLKDHMENTPGFA-T  230

Query  121  ELTVFSLIVVDECHH  135
             L    ++++DE   
Sbjct  231  RLMGVKVLILDEADR  245


>sp|Q5RFQ5|DDX6_PONAB Probable ATP-dependent RNA helicase DDX6 
OS=Pongo abelii OX=9601 GN=DDX6 PE=2 SV=1
Length=483

 Score = 86.4 bits (212),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 49/335 (15%), Positives = 108/335 (32%), Gaps = 24/335 (7%)

Query  190  ANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPEL  249
             N+    I+  +    Q+ +   Q  K        +    G  L+  + ++ D + +   
Sbjct  163  DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMAT-TGGTNLRGDIMRLDDTVHVVIA  221

Query  250  SRKFGTQMYEQQVVKLSEAAALAGLQEQRVYAL-HLRRYNDALLIHDTVRAVDALAALQD  308
            +      + ++ V K+     +   +  ++ +   ++   D +L     R +   +A   
Sbjct  222  TPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFP  281

Query  309  FYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSP  368
               ++ +     L     +  + +     +     +  E  K+      L   FS     
Sbjct  282  LSVQKFMN--SHLQKPYEINLMEELTLKGVTQYYAYVTERQKV----HCLNTLFSRLQIN  335

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            + IIF  + Q    L   + Q              +G         M Q  +  V   F+
Sbjct  336  QSIIFCNSSQRVELLAKKISQ--------------LGYSCFYIHAKMRQEHRNRVFHDFR  381

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFVATEGSR  488
            +G    LV T +   G+DI   NVV+ +       + +   G   + +  +  +A     
Sbjct  382  NGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIG--GSGRFGHLGLAINLIT  439

Query  489  ELKRELINEALETLMEQAVAAVQKMDQAEYQAKIR  523
               R  +    E L  +       +D++ Y A+  
Sbjct  440  YDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYH  474


 Score = 48.3 bits (113),  Expect = 2e-04, Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 63/167 (38%), Gaps = 14/167 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLE-TVDGAKVVVLVNRVHL---VTQ  62
            Q E I  AL G++I+     G GK+ A        L+   D  + +V+V    L   V+Q
Sbjct  123  QEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQ  182

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
               +  + + G   V   +G    R     L     ++I T   +   +    ++   ++
Sbjct  183  ICIQVSKHMGGA-KVMATTGGTNLRGDIMRLDDTVHVVIATPGRILDLI----KKGVAKV  237

Query  123  TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS  169
                +IV+DE         +  IM   +    +      Q+L  +A+
Sbjct  238  DHVQMIVLDEADKLLSQD-FVQIMEDIILTLPKNR----QILLYSAT  279


>sp|Q0TXZ2|SUB2_PHANO ATP-dependent RNA helicase SUB2 OS=Phaeosphaeria 
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) 
OX=321614 GN=SUB2 PE=3 SV=1
Length=438

 Score = 86.0 bits (211),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 79/226 (35%), Gaps = 32/226 (14%)

Query  304  AALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG--------PENPKLEMLE  355
            A  Q       ++K      ++ +    +   ++   L  HG         E  K   L 
Sbjct  231  AHKQVMMFSATLSKEIRAVCKKFMQNPLEIYVDDEKKLTLHGLQQFYVKLDEREKNRKLN  290

Query  356  KILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHM  415
             +L          + IIF R+      L   L++                  +++  + +
Sbjct  291  DLLDNL----EFNQVIIFVRSTLRCTELDKLLRECNFP--------------STAVHSGI  332

Query  416  TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARAD  475
             Q ++ +  ++F++    + V+T +   G+D+   NV + Y +     + +   GRA   
Sbjct  333  GQEERIKRYKEFKEFQTRICVSTDIFGRGIDVERINVAINYDMPDKADAYLHRVGRAGRF  392

Query  476  QS---VYAFVATEGSRELKR---ELINEALETLMEQAVAAVQKMDQ  515
             +     +FV+++    + +   E     +    E  +++   MD 
Sbjct  393  GTKGLSISFVSSQDDEAVLKAIEERFAAEIPEFPEDGISSASYMDN  438


 Score = 48.3 bits (113),  Expect = 2e-04, Method: Composition-based stats.
 Identities = 26/137 (19%), Positives = 47/137 (34%), Gaps = 16/137 (12%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG---AKVVVLVNRVHLVTQ-  62
            Q   I  A+ G +++    +G GKT        + ++       A ++V+ +   L  Q 
Sbjct  79   QQVTIPQAILGNDVLCQAKSGLGKTAVFVLATLQQMDEKPEPGVASILVMCHTRELAYQI  138

Query  63   --HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHD----LLICTAELLQMALTSPEE  116
                  F + L          G   P A    L    D    +++ T       + +   
Sbjct  139  RNEYNRFAKFLPDVKVGVFYGG--TPVAKDIELLSNKDTHPHIIVGTP----GRINALVR  192

Query  117  EEHVELTVFSLIVVDEC  133
            + H+ L      V+DEC
Sbjct  193  DRHLRLANLKHFVLDEC  209


>sp|Q98I01|UVRB_RHILO UvrABC system protein B OS=Mesorhizobium 
japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099) OX=266835 
GN=uvrB PE=3 SV=1
Length=870

 Score = 87.5 bits (215),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 67/173 (39%), Gaps = 24/173 (14%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            R ++   T++ A  L  +L +Q              G       + +   ++ E+++  +
Sbjct  442  RTLVTVLTKRMAEDLTEYLHEQ--------------GVRVRYMHSDIDTLERIEILRDLR  487

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAFVA  483
             G  ++LV  ++  EGLDIP C  V          L +E S++Q  GRA  +      + 
Sbjct  488  LGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILY  547

Query  484  TE---GSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKR  533
             +   GS E      N   E  ME    A   +     +++I D+  +   K 
Sbjct  548  ADQVTGSMERAMAETNRRREKQME--WNAANGITPESVKSRISDILDSVYEKD  598


 Score = 40.9 bits (94),  Expect = 0.042, Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 18/48 (38%), Gaps = 5/48 (10%)

Query  26  TGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDG  73
           TG+GKT   A V +           ++L     L  Q   EF++    
Sbjct  35  TGSGKTFTMAKVIEETQRP-----ALILAPNKTLAAQLYSEFKKFFPD  77


>sp|Q0SW76|UVRB_CLOPS UvrABC system protein B OS=Clostridium perfringens 
(strain SM101 / Type A) OX=289380 GN=uvrB PE=3 SV=1
Length=659

 Score = 87.2 bits (214),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 51/398 (13%), Positives = 137/398 (34%), Gaps = 30/398 (8%)

Query  167  TASPGTGGASKLDGAINHVLQLCANL-DTWCIMSPQN---CCPQLQEHSQQPCKQYNLC-  221
            + +P +  A+  +     +  +   L D   +++ ++      +L++ +    +      
Sbjct  241  SITPASHFAASEETLEKSISIIEDELEDRLKVLTAEDKILEAQRLKQRTNYDIEMIREMG  300

Query  222  HRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYA  281
            + +  + +  +L   M        +      F   + E  V      A  AG + ++   
Sbjct  301  YCQGIENYSRILDGRMPGTPPQTLLDYFPEDFLMFIDESHVTLPQVRAMYAGDRSRKTSL  360

Query  282  LHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHL  341
            +           +  ++  +  + +              L     +          L  +
Sbjct  361  VEFGFRLPCAFDNRPLKFSEFESKINQVVFVSATPGEYELDHSEIVAEQIIRPTGLLDPV  420

Query  342  ATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQ  401
                P   +++ L   +QR        R +I T T++ A  L  +L+             
Sbjct  421  IEIRPIKGQIDDLYGEIQRT--VQRGFRVLITTLTKRMAEDLTKYLKD------------  466

Query  402  LLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG----  457
              +    +   + +   ++ ++I++ + G +++L+  ++  EGLDIP   +V        
Sbjct  467  --LNVKATYMHSDIDTLERMKIIRELRLGEVDVLIGINLLREGLDIPEVALVAILDADKE  524

Query  458  -LLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQ  515
              L +E S++Q  GR AR  +S     A   ++ + + +       +++        +  
Sbjct  525  GFLRSETSLIQTIGRAARNSESKVIMYADNITKSMDKSIKETERRRVIQMEYNEEHNITP  584

Query  516  AEYQAKIRDLQQAALTKRAA---QAAQRENQRQQFPVE  550
                  +RD+ +A          ++  ++  ++  P+E
Sbjct  585  TTVIKGVRDIIEATKVSEEKENYESEVKKAAKKDIPIE  622


>sp|O59025|HELS_PYRHO ATP-dependent DNA helicase Hel308 OS=Pyrococcus 
horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 
/ NBRC 100139 / OT-3) OX=70601 GN=hel308 PE=3 SV=1
Length=715

 Score = 87.2 bits (214),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 42/170 (25%), Positives = 68/170 (40%), Gaps = 14/170 (8%)

Query  7    QWEVIMPA-LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q E +    L+G+N +I +PT +GKT  A       L   +G K V LV    L  +  +
Sbjct  28   QAEALTSGILKGENALIAIPTASGKTLIAEIAIVNRL-LKEGGKAVYLVPLKALAEEKFK  86

Query  66   EFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF  125
            EF+   +    V   +GD   +  +      +D++I TAE     L          +   
Sbjct  87   EFKDWEELGLKVAMATGDYDSKDEW---LGGYDIIIATAEKFDSLL----RHGSSWIRNV  139

Query  126  SLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGA  175
             ++VVDE H               LE  + +     Q++GL+A+ G    
Sbjct  140  KVLVVDEIHLIGSRD-----RGATLEFIITQMLNRAQIIGLSATIGNPEE  184


 Score = 44.0 bits (102),  Expect = 0.005, Method: Composition-based stats.
 Identities = 32/192 (17%), Positives = 67/192 (35%), Gaps = 33/192 (17%)

Query  347  ENPKLEMLEKILQRQFSSSNSPRG-IIFTRTRQSAHS--------LLLWLQQQQGLQTVD  397
            E+ K E      +  + +    +G ++F   R+ A          +  +L +++  +  +
Sbjct  216  EDGKTEKFNSWEELVYDAIKRSKGSLVFVNMRRKAEKTALELSKKIRNFLTKKELRELKE  275

Query  398  I-----------RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLD  446
            +           +    +  G +     + + ++  V + F+ G + ++VAT     G++
Sbjct  276  LAESLEENPTNEKLAKALQGGVAFHHAGLGREERVLVEENFKKGLIKVVVATPTLSAGIN  335

Query  447  IPHCNVVVR-------YGLLTNEISMV-QARGRARAD-----QSVYAFVATEGSRELKRE  493
             P   V+VR       +G+    I  + Q  GRA                TE    +   
Sbjct  336  TPAFRVIVRDTWRYSEFGMERIPILEIQQMMGRAGRPKYDEVGEAIIVSTTEEPSTVMER  395

Query  494  LINEALETLMEQ  505
             I    E L  Q
Sbjct  396  YIKGKPEKLFSQ  407


>sp|Q0HR19|RAPA_SHESR RNA polymerase-associated protein RapA OS=Shewanella 
sp. (strain MR-7) OX=60481 GN=rapA PE=3 SV=1
Length=968

 Score = 87.5 bits (215),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 75/452 (17%), Positives = 151/452 (33%), Gaps = 40/452 (9%)

Query  27   GAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGP  86
            G GKT  A  +  + L T    +V+++V    L  Q   E  R  + R++V      +  
Sbjct  179  GLGKTIEAGLIIHQQLLTGRAERVLIIVPD-TLRHQWLVEMLRRFNLRFSVFDEDRCVEA  237

Query  87   RAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHT--HKDTVYNV  144
             A   +      L+IC+       L   +  +      + L+VVDE HH    ++     
Sbjct  238  FADHDNPFYTEQLVICS----LELLRKKKRLDQALDADWDLLVVDEAHHLEWTEEAPSRA  293

Query  145  IMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCC  204
                  ++    ++ +P VL LTA+P         G  +H  +L   LD           
Sbjct  294  -----YQVVEALSEVVPGVLLLTATP------DQLGHESHFARL-RLLDPDRFYDYDAFL  341

Query  205  PQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVK  264
             +  E+S +                 D     + ++    ++    R    +  + ++ +
Sbjct  342  AE--ENSYKDVA-VAAEALAGDAKLSDAAINSLTELLSEKDIAPSIRLIQAEDIDSELQQ  398

Query  265  LSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAE  324
             + +  L  L ++      L R + A +     R  +A        +       +++   
Sbjct  399  AARSELLQELLDRHGTGRVLYRNSRASVKGFPKRIFNAYPHAMPEQYLTAARVNEMMGGR  458

Query  325  RRL---LALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAH  381
            + L    A     +        +     K +     L     S  S + +I      +A 
Sbjct  459  KTLEAKAAQALSPEKLYQEFEDNSASWWKFDPRVDWLIEFLKSHRSKKVLIIASGADTAL  518

Query  382  SLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF--QDGTLNLLVATS  439
            SL   L+ ++G+Q                    M+  ++ +    F  ++G    L+ + 
Sbjct  519  SLEEALRTREGIQATVFH-------------EGMSIIERDKAGAYFAQEEGGAQALICSE  565

Query  440  VAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
            +  EG +    + +V + L  N   + Q  GR
Sbjct  566  IGSEGRNFQFASHLVLFDLPLNPDLLEQRIGR  597


>sp|Q59N29|SPB4_CANAL ATP-dependent rRNA helicase SPB4 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=SPB4 
PE=3 SV=1
Length=631

 Score = 86.8 bits (213),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 63/172 (37%), Gaps = 16/172 (9%)

Query  321  LCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSA  380
            + ++       +  K+         PE  K+  L  IL +        + I++  T  S 
Sbjct  237  VKSKNYFGEQSNSPKSLQLSYMMINPEL-KITTLLTILSKYQYK----KAIVYFPTCTSV  291

Query  381  HSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN----LLV  436
                    +    ++ D   +        S    +  + + + +  F  G +N    +L+
Sbjct  292  KHFYQIFNKVYQQESSDEPLKFF------SLHGQLNTKSRLKTLDNFTQGDINLYKHILM  345

Query  437  ATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGS  487
             T VA  G+DIP  ++V++    T+    +   GR  RA++   A V    +
Sbjct  346  TTDVAARGIDIPDVDLVIQIDPPTDPNVFLHRCGRTGRANKVGRAIVMLNDN  397


 Score = 35.5 bits (80),  Expect = 2.0, Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 48/141 (34%), Gaps = 28/141 (20%)

Query  18   KNIIIWLPTGAGKTR---AAAY--VAKRHLETVDGA-----------KVVVLVNRVHLVT  61
            K++++   TG+GKT          ++ R  +                  +VL     L  
Sbjct  48   KDVVVEAVTGSGKTLSFVIPVLQKISDRLYKPDSDGDLPEPVKRGHMLSIVLSPTRELAN  107

Query  62   QHGEEFRRML-------DGRWTVTTLSGDMGPRAGFGHLARCH--DLLICTAELLQMALT  112
            Q    F ++L         R     L G +G      +    +   +LI T   +   L 
Sbjct  108  QIQSVFNQVLQYLPEDKGTRINTQLLVGSIGNVREDLNQFLTNQPQILIGTPGRILEFLG  167

Query  113  SPEEEEHVELTVFSLIVVDEC  133
            S +    ++ +   ++++DE 
Sbjct  168  SSQS---IKTSSLEIVILDEA  185


>sp|Q5WDG7|UVRB_SHOC1 UvrABC system protein B OS=Shouchella clausii 
(strain KSM-K16) OX=66692 GN=uvrB PE=3 SV=1
Length=660

 Score = 86.8 bits (213),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 38/214 (18%), Positives = 81/214 (38%), Gaps = 33/214 (15%)

Query  359  QRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQR  418
            Q     +   R ++ T T++ A  L  +L++              IG       + +   
Sbjct  437  QIHDQIAKDERVLVTTLTKKMAEDLTDYLKE--------------IGIKVRYLHSEVKTL  482

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRAR  473
            ++ E+I++ + GT ++L+  ++  EG+DIP  ++V          L  E S++Q  GRA 
Sbjct  483  ERLEIIRQLRLGTFDVLIGINLLREGIDIPEVSLVAILDADKEGFLRAERSLIQTIGRAA  542

Query  474  ADQSVYAFVATEG---------SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKI--  522
             + +    +  +          +   +R  I +A           +QK      QA    
Sbjct  543  RNANGRVIMYADKMTHSMEVAINETKRRRQIQQAYNEQHGITPQTIQKRIPEVVQATYAA  602

Query  523  ---RDLQQAALTKRAAQAAQRENQRQQFPVEHVQ  553
                D + ++ + +     +R+   ++   E  Q
Sbjct  603  EETGDYKASSTSSKKLGKKERQATIERVEAEMKQ  636


>sp|Q0HMR2|RAPA_SHESM RNA polymerase-associated protein RapA OS=Shewanella 
sp. (strain MR-4) OX=60480 GN=rapA PE=3 SV=1
Length=968

 Score = 87.2 bits (214),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 75/452 (17%), Positives = 151/452 (33%), Gaps = 40/452 (9%)

Query  27   GAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGP  86
            G GKT  A  +  + L T    +V+++V    L  Q   E  R  + R++V      +  
Sbjct  179  GLGKTIEAGLIIHQQLLTGRAERVLIIVPD-TLRHQWLVEMLRRFNLRFSVFDEDRCVEA  237

Query  87   RAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHT--HKDTVYNV  144
             A   +      L+IC+       L   +  +      + L+VVDE HH    ++     
Sbjct  238  FADHDNPFYTEQLVICS----LELLRKKKRLDQALDADWDLLVVDEAHHLEWTEEAPSRA  293

Query  145  IMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCC  204
                  ++    ++ +P VL LTA+P         G  +H  +L   LD           
Sbjct  294  -----YQVVEALSEVVPGVLLLTATP------DQLGHESHFARL-RLLDPDRFYDYDAFL  341

Query  205  PQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVK  264
             +  E+S +                 D     + ++    ++    R    +  + ++ +
Sbjct  342  AE--ENSYKDVA-VAAEALAGDAKLSDAAINSLTELLSEKDIAPSIRLIQAEDIDSELQQ  398

Query  265  LSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAE  324
             + +  L  L ++      L R + A +     R  +A        +       +++   
Sbjct  399  AARSELLQELLDRHGTGRVLYRNSRASVKGFPKRIFNAYPHAMPEQYLTAARVNEMMGGR  458

Query  325  RRL---LALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAH  381
            + L    A     +        +     K +     L     S  S + +I      +A 
Sbjct  459  KTLEAKAAQALSPEKLYQEFEDNSASWWKFDPRVDWLIEFLKSHRSKKVLIIASGADTAL  518

Query  382  SLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF--QDGTLNLLVATS  439
            SL   L+ ++G+Q                    M+  ++ +    F  ++G    L+ + 
Sbjct  519  SLEEALRTREGIQATVFH-------------EGMSIIERDKAGAYFAQEEGGAQALICSE  565

Query  440  VAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
            +  EG +    + +V + L  N   + Q  GR
Sbjct  566  IGSEGRNFQFASHLVLFDLPLNPDLLEQRIGR  597


>sp|P32639|BRR2_YEAST Pre-mRNA-splicing helicase BRR2 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=BRR2 
PE=1 SV=2
Length=2163

 Score = 87.5 bits (215),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 45/177 (25%), Positives = 75/177 (42%), Gaps = 20/177 (11%)

Query  7    QWEVIMPALEG-KNIIIWLPTGAGKTRAAAY-VAKRHLETVDGA---------KVVVLVN  55
            Q +V   A EG  N++I  PTG+GKT  A   V K      +           K+V +  
Sbjct  503  QSKVFHAAFEGDSNMLICAPTGSGKTNIALLTVLKALSHHYNPKTKKLNLSAFKIVYIAP  562

Query  56   RVHLVTQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP  114
               LV +   EF+R L      V  L+GD   R     +     +L+ T E     +T+ 
Sbjct  563  LKALVQEQVREFQRRLAFLGIKVAELTGD--SRLSRKQIDET-QVLVSTPEKW--DITTR  617

Query  115  EEEEHVELTVFSLIVVDECH--HTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS  169
                   + +  L+++DE H  H  +  V   I+++      +  Q  P+++GL+A+
Sbjct  618  NSNNLAIVELVRLLIIDEIHLLHDDRGPVLESIVARTFWAS-KYGQEYPRIIGLSAT  673


 Score = 47.1 bits (110),  Expect = 6e-04, Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 57/161 (35%), Gaps = 36/161 (22%)

Query  363  SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQ---------------------  401
            S +   + I+F  +R+       WL+ +   + +  +                       
Sbjct  733  SINEGNQIIVFVHSRKETSRTATWLKNKFAEENITHKLTKNDAGSKQILKTEAANVLDPS  792

Query  402  --LLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVR----  455
               LI +G  +    +T+ D+      F DG L +LV T+    G+++P   V+++    
Sbjct  793  LRKLIESGIGTHHAGLTRSDRSLSEDLFADGLLQVLVCTATLAWGVNLPAHTVIIKGTDV  852

Query  456  YGL---------LTNEISMVQARGRARADQSVYAFVATEGS  487
            Y             + + M+   GR R D      + T+ S
Sbjct  853  YSPEKGSWEQLSPQDVLQMLGRAGRPRYDTFGEGIIITDQS  893


 Score = 40.9 bits (94),  Expect = 0.055, Method: Composition-based stats.
 Identities = 28/134 (21%), Positives = 50/134 (37%), Gaps = 14/134 (10%)

Query  7     QWEVIMPALEGKNIIIWLPTG--AGKTRAAAYVAKRHLETVDGAKVVVLVNRVH----LV  60
             Q +V   +L   N  +++ +G   GKT  A      H    +  + V +         L+
Sbjct  1352  QSQVFE-SLYNSNDSVFVGSGKGTGKTAMAELALLNHWRQ-NKGRAVYINPSGEKIDFLL  1409

Query  61    TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
             +   + F   L G   +  L  D  P      LA+ H +L+ T    +  L S    +  
Sbjct  1410  SDWNKRF-SHLAGGKIINKLGND--PSLNLKLLAKSH-VLLATPVQFE--LLSRRWRQRK  1463

Query  121   ELTVFSLIVVDECH  134
              +    L++ D+ H
Sbjct  1464  NIQSLELMIYDDAH  1477


>sp|Q6CXB7|HAS1_KLULA ATP-dependent RNA helicase HAS1 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 
1267 / NRRL Y-1140 / WM37) OX=284590 GN=HAS1 PE=3 SV=1
Length=497

 Score = 86.0 bits (211),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 52/170 (31%), Gaps = 17/170 (10%)

Query  357  ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT  416
            +L      +   + I+F  +  S       L        +D+    L G           
Sbjct  271  LLFSFLKRNQKKKVIVFLSSCNSVKYYAELL------NYIDLPVLELHG--------KQK  316

Query  417  QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQ  476
            Q+ +     +F +    +LV T VA  GLDIP  + ++++    +    +   GR     
Sbjct  317  QQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGT  376

Query  477  SVY---AFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIR  523
                      T       R L    +     +         QA+ +  I+
Sbjct  377  KGKGKSLMFLTPTELGFLRYLKAAKVPLNEYEFPTNKIANVQAQLEKLIK  426


 Score = 58.3 bits (139),  Expect = 2e-07, Method: Composition-based stats.
 Identities = 31/135 (23%), Positives = 49/135 (36%), Gaps = 9/135 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTR---AAAYVAKRHLETVD--GAKVVVLVNRVHLVT  61
            Q   I P L GK+++    TG+GKT      A      L+     G  V+V+     L  
Sbjct  61   QTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRNGTGVIVITPTRELAL  120

Query  62   QHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
            Q     R +++        + G    R     L +  ++LI T   L   L + +     
Sbjct  121  QIFGVARELMEFHSQTFGIVIGGANRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFK  180

Query  121  ELTVFSLIVVDECHH  135
             L     +V+DE   
Sbjct  181  NLKA---LVIDEADR  192


>sp|Q9W3Y5|Y4443_DROME Putative ATP-dependent RNA helicase CG14443 
OS=Drosophila melanogaster OX=7227 GN=CG14443 PE=3 SV=2
Length=736

 Score = 86.8 bits (213),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 34/192 (18%), Positives = 68/192 (35%), Gaps = 20/192 (10%)

Query  349  PKLEMLEKILQRQFSSSNSP-RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG  407
             K+E L K L   + +S+ P + +I+ + ++    L+  ++     + +           
Sbjct  560  SKVERLMKELTAIYDTSDIPGKVVIYVKRQKVVEELVDLIRNCVPCEGI-----------  608

Query  408  NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
                    T ++ Q +I  F  G  N++VAT +    LD+P    V+ Y    N    VQ
Sbjct  609  ----HGGRTAQENQGIIHDFGTGAYNIIVATQMTSNCLDVPGIRYVINYDFPDNIDKYVQ  664

Query  468  ARGRAR----ADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIR  523
               R                T  + +L  E+++       E     +Q  ++  +  + R
Sbjct  665  RMSRTGCLSYNRNCEVISFFTMANYKLVTEVVDFLKICKQEIGPHLLQLAEEKMFGPRQR  724

Query  524  DLQQAALTKRAA  535
               +     R  
Sbjct  725  RRHRPQRYNRMH  736


>sp|Q7N6Q1|UVRB_PHOLL UvrABC system protein B OS=Photorhabdus 
laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / 
TT01) OX=243265 GN=uvrB PE=3 SV=1
Length=669

 Score = 86.8 bits (213),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 37/253 (15%), Positives = 88/253 (35%), Gaps = 22/253 (9%)

Query  307  QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSN  366
            Q  Y      K ++  +   ++         L       P   +++ L   ++    +  
Sbjct  388  QTIYISATPGKYELEKSSGDVVEQVVRPTGLLDPEVEVRPVATQVDDLLSEIR--IRAVK  445

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R ++ T T++ A  L  +L++               G       + +   ++ E+I+ 
Sbjct  446  NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERVEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  +    A 
Sbjct  492  LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLHGKAI  551

Query  482  VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR  540
            +  +  +  + + +         +Q       +       KI D+ Q        +  + 
Sbjct  552  LYGDKITDSMAKAIGETERRRAKQQIFNEKHGIVPKGLNKKINDILQIGQPAGGKRKGRG  611

Query  541  ENQRQQFPVEHVQ  553
            +         ++ 
Sbjct  612  KAVATAETFSNLS  624


 Score = 36.7 bits (83),  Expect = 0.84, Method: Composition-based stats.
 Identities = 16/71 (23%), Positives = 24/71 (34%), Gaps = 8/71 (11%)

Query  2   ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVT  61
            +R  Q E +   L  + ++    TG+GKT   A V             +VL     L  
Sbjct  20  AIRQLQ-EGLEDGLAHQTLLGV--TGSGKTFTVANVIANL-----NRPTMVLAPNKTLAA  71

Query  62  QHGEEFRRMLD  72
           Q   E +    
Sbjct  72  QLYSEMKDFFP  82


>sp|A1DMT9|MAK5_NEOFI ATP-dependent RNA helicase mak5 OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / 
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=mak5 
PE=3 SV=1
Length=777

 Score = 86.8 bits (213),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 33/139 (24%), Positives = 53/139 (38%), Gaps = 22/139 (16%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K   L  +L          R ++FT +  +   L   LQ  Q                  
Sbjct  493  KDLFLYTLLLYH----PKHRTLVFTNSISAVRRLTKLLQTLQLPAL--------------  534

Query  410  SQSTHMTQRDQQEVIQKFQDGTLN---LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV  466
            +  + M Q+ +   +++F   + +   +LVAT VA  GLDI   N+V+ Y       + V
Sbjct  535  ALHSSMAQKARLRSVERFSSPSSDPSTILVATDVAARGLDIKGINLVIHYHAPRTADTYV  594

Query  467  QARGR-ARADQSVYAFVAT  484
               GR ARA  S  + +  
Sbjct  595  HRSGRTARAGASGKSVIIC  613


 Score = 48.3 bits (113),  Expect = 3e-04, Method: Composition-based stats.
 Identities = 28/141 (20%), Positives = 51/141 (36%), Gaps = 22/141 (16%)

Query  15   LEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVD-------GAK--------VVVLVNRVH  58
            LEG ++I    TG+GKT A    + + +LE            K         ++L     
Sbjct  236  LEGHDVIGKASTGSGKTLAFGIPILEHYLEKKRDDISAEKEKKSEKDSTPIALILSPTRE  295

Query  59   LVTQHGEEFRRMLDGRWTV----TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP  114
            L  Q  +    ++     V      L+G +  +     L    D++I T   +   L++ 
Sbjct  296  LAHQLSKHIGELIAQAPGVNARIALLTGGLSVQKQ-QRLLSGADIVIGTPGRVWEILSTG  354

Query  115  EEEEHVELTVFSLIVVDECHH  135
            +     ++     +VVDE   
Sbjct  355  QGL-IRKMQQIKFLVVDEADR  374


>sp|Q4IBS2|MAK5_GIBZE ATP-dependent RNA helicase MAK5 OS=Gibberella 
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / 
NRRL 31084 / PH-1) OX=229533 GN=MAK5 PE=3 SV=2
Length=781

 Score = 86.8 bits (213),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 25/132 (19%), Positives = 49/132 (37%), Gaps = 15/132 (11%)

Query  365  SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI  424
            +   R ++FT +  +   L   L                         + M Q+ +   +
Sbjct  504  NPGRRTLVFTNSISAVRRLTPLLTNLNLTALP--------------LHSQMAQKARHRSL  549

Query  425  QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVA  483
            ++F     ++L+AT VA  GLDI   + V+ Y +  +  + +   GR AR + S  + + 
Sbjct  550  ERFTASRNSILIATDVAARGLDIKEVDQVLHYHVPRSADTYIHRSGRTARGESSGISVIL  609

Query  484  TEGSRELKRELI  495
                  L    +
Sbjct  610  CAPEEVLPTRRL  621


 Score = 44.4 bits (103),  Expect = 0.004, Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 41/130 (32%), Gaps = 14/130 (11%)

Query  17   GKNIIIWLPTGAGKTRAAA--------YVAKRHLETVDGAKVVVLVNRVHLVTQ---HGE  65
            G ++I    TG+GKT  A            +       G   +VL     L  Q   H +
Sbjct  252  GHDVIGKAQTGSGKTL-AFGIPMVERWLEMQEQGVKRTGPMSLVLSPTRELAKQLGDHLK  310

Query  66   EFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF  125
                 L     V  ++G +             D++I T   L   L+  +     +    
Sbjct  311  ALCDGLPSAPYVCVVTGGLSI-LKQQRQLEKADIVIGTPGRLWEVLS-GDRALQSKFAKI  368

Query  126  SLIVVDECHH  135
              +VVDE   
Sbjct  369  RFLVVDEADR  378


>sp|A1CTL8|MAK5_ASPCL ATP-dependent RNA helicase mak5 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=mak5 PE=3 SV=1
Length=774

 Score = 86.8 bits (213),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 29/139 (21%), Positives = 51/139 (37%), Gaps = 22/139 (16%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K   L  +L          R ++FT +  +                   +    +     
Sbjct  490  KDLFLYTLLLYH----PKHRTLVFTNSISAVRR--------------LAQLLQALQLPAL  531

Query  410  SQSTHMTQRDQQEVIQKFQDGTLN---LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV  466
            +  + M Q+ +   +++F   T N   +L+AT VA  GLDI   ++V+ Y       + V
Sbjct  532  ALHSSMAQKARLRSVERFSSPTANPGTILIATDVAARGLDIKGIDLVIHYHAPRTADTYV  591

Query  467  QARGR-ARADQSVYAFVAT  484
               GR ARA  S  + +  
Sbjct  592  HRSGRTARAGASGKSVIIC  610


 Score = 44.8 bits (104),  Expect = 0.003, Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 52/141 (37%), Gaps = 22/141 (16%)

Query  15   LEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVD-------GAK--------VVVLVNRVH  58
            L+G +++    TG+GKT A    + + +LE          G K         ++L     
Sbjct  233  LDGHDVVGKASTGSGKTLAFGIPILEHYLEKNRDGHGDIIGKKDKKDSTPIALILSPTRE  292

Query  59   LVTQHGEEFRRMLDGRWTV----TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP  114
            L  Q  +    ++     V      L+G +  +     L    D++I T   +   +++ 
Sbjct  293  LAHQLAKHIGELVTQAPGVNARIALLTGGLSVQKQ-QRLLAGADIVIGTPGRVWEIMSTG  351

Query  115  EEEEHVELTVFSLIVVDECHH  135
            +     ++     +VVDE   
Sbjct  352  QGL-IRKMQKIKFLVVDEADR  371


>sp|Q759L6|SUB2_EREGS ATP-dependent RNA helicase SUB2 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=SUB2 PE=3 SV=1
Length=438

 Score = 85.6 bits (210),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 35/222 (16%), Positives = 66/222 (30%), Gaps = 33/222 (15%)

Query  310  YHREHVTKTQILCAERRLLALFDDRKNELAHLATHG--------PENPKLEMLEKILQRQ  361
                 +++       R L    +   ++ A L  HG         E  K   L ++L   
Sbjct  237  MFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIRLEEREKNRKLAQLLDDL  296

Query  362  FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ  421
                   + IIF ++   A+ L   L                          HM Q ++ 
Sbjct  297  ----EFNQVIIFVKSTLRANELTKLLNASNFPAIT--------------VHGHMRQEERI  338

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARA-DQSVYA  480
               + F++    + V+T V   G+DI   N+ + Y + +     +   GRA        A
Sbjct  339  ARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPSEADQYLHRVGRAGRFGTKGLA  398

Query  481  FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKI  522
                    +       E L  + E+    + +  +       
Sbjct  399  ISLVSSKDD------EEVLAKIQERFDVKITEFPEEGVDPST  434


 Score = 50.6 bits (119),  Expect = 3e-05, Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 51/135 (38%), Gaps = 14/135 (10%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQ---  62
            Q   I  ++ G +++    +G GKT        + L+ V G   VVVL N   L  Q   
Sbjct  81   QQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVSVVVLCNARELAYQIRN  140

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHD----LLICTAELLQMALTSPEEEE  118
                F + +    T     G          L +  D    +++ T   L+    +   + 
Sbjct  141  EYLRFSKYMPDVKTAVFYGG--TDTRKDIELLKNKDTAPHIVVATPGRLK----ALVRDN  194

Query  119  HVELTVFSLIVVDEC  133
            +++L+     V+DEC
Sbjct  195  NIDLSHVKNFVIDEC  209


>sp|Q8PZR7|HELS_METMA ATP-dependent DNA helicase Hel308 OS=Methanosarcina 
mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 
/ JCM 11833 / OCM 88) OX=192952 GN=hel308 PE=3 SV=1
Length=730

 Score = 86.8 bits (213),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 45/176 (26%), Positives = 74/176 (42%), Gaps = 12/176 (7%)

Query  1    MELRSYQWEVIMPAL-EGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHL  59
            +EL   Q E +   L EGKN++  +PT +GKT  A     + +  ++G K + +V    L
Sbjct  22   LELYPPQAEAVEKGLLEGKNLLAAIPTASGKTLLAELAMLKSV--LNGGKALYIVPLRAL  79

Query  60   VTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
             ++    F+        V   +GD   R         +D+++ T+E     L      E 
Sbjct  80   ASEKFRRFQEFSVLGMRVGISTGDYDRR---DEGLGINDIIVATSEKTDSLL----RNET  132

Query  120  VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGA  175
              +   S++V DE H    D+       +    KL+R  P  QVL L+A+ G    
Sbjct  133  AWMQEISVVVADEVHLI--DSPDRGPTLEITLSKLRRMNPSCQVLALSATVGNADE  186


 Score = 40.6 bits (93),  Expect = 0.057, Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 77/227 (34%), Gaps = 20/227 (9%)

Query  262  VVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQD---FYHREHVTKT  318
            + +++ +  +  L      A  L  + DA L+    R  D +  +     FY ++     
Sbjct  165  LRRMNPSCQVLALSATVGNADELAAWLDAELVLSEWRPTDLMEGVFYNGIFYCKDKEKPV  224

Query  319  QILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQ  378
                 +  +  + D  K     L         +   +K +     + ++         R+
Sbjct  225  GQPTKDEAVNLVLDTIKEGGQCLVFESSRKNCMGFAKKAVSAVKKTLSN-------EDRE  277

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT  438
            +   +   + +        + A   + +G +     +T   ++ V   F++G + ++ +T
Sbjct  278  TLAGIADEIIENSETDVSSVLATC-VRSGTAFHHAGLTTPLRELVENGFREGRIKIISST  336

Query  439  SVAEEGLDIPHCNVVV----RYGL-----LTNEISMVQARGRARADQ  476
                 GL++P   V++    RY           +   Q  GRA   +
Sbjct  337  PTLAAGLNLPARRVIIRSYRRYSSDSGMQPIPVLEYKQMAGRAGRPR  383


>sp|C4K0Z4|UVRB_RICPU UvrABC system protein B OS=Rickettsia peacockii 
(strain Rustic) OX=562019 GN=uvrB PE=3 SV=1
Length=661

 Score = 86.4 bits (212),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 36/184 (20%), Positives = 76/184 (41%), Gaps = 24/184 (13%)

Query  346  PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
            P   ++E L   +Q     +   R ++ T T++ A  L  +LQ+ +              
Sbjct  426  PATNQVEDLISEIQTT--IAQGFRVLVTTLTKKMAEDLTAYLQELK--------------  469

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLT  460
               S   +++   ++ E+++  + GT+++LV  ++  EGLDIP C +V          L 
Sbjct  470  YKTSYLHSNVHTLERIEILRDLRQGTIDVLVGINLLREGLDIPECGLVAILDADKEGFLR  529

Query  461  NEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA  520
            +E+S++Q  GRA  + +    +  +   ++ + +     ETL  + +             
Sbjct  530  SEVSLIQTIGRAARNSAGRVILYAD---KMTKSIDKAVSETLRRRQIQQEYNEKHGIIPK  586

Query  521  KIRD  524
             I  
Sbjct  587  TINR  590


>sp|Q92J03|UVRB_RICCN UvrABC system protein B OS=Rickettsia conorii 
(strain ATCC VR-613 / Malish 7) OX=272944 GN=uvrB PE=3 
SV=1
Length=661

 Score = 86.4 bits (212),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 36/184 (20%), Positives = 76/184 (41%), Gaps = 24/184 (13%)

Query  346  PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
            P   ++E L   +Q     +   R ++ T T++ A  L  +LQ+ +              
Sbjct  426  PATNQVEDLISEIQTTI--AQGFRVLVTTLTKKMAEDLTAYLQELK--------------  469

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLT  460
               S   +++   ++ E+++  + GT+++LV  ++  EGLDIP C +V          L 
Sbjct  470  YKTSYLHSNVHTLERIEILRDLRQGTIDVLVGINLLREGLDIPECGLVAILDADKEGFLR  529

Query  461  NEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA  520
            +E+S++Q  GRA  + +    +  +   ++ + +     ETL  + +             
Sbjct  530  SEVSLIQTIGRAARNSAGRVILYAD---KMTKSIDKAVSETLRRRQIQQEYNEKHGIIPK  586

Query  521  KIRD  524
             I  
Sbjct  587  TINR  590


>sp|A8GR53|UVRB_RICRS UvrABC system protein B OS=Rickettsia rickettsii 
(strain Sheila Smith) OX=392021 GN=uvrB PE=3 SV=1
Length=661

 Score = 86.4 bits (212),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 36/184 (20%), Positives = 76/184 (41%), Gaps = 24/184 (13%)

Query  346  PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
            P   ++E L   +Q     +   R ++ T T++ A  L  +LQ+ +              
Sbjct  426  PATNQVEDLISEIQTT--IAQGFRVLVTTLTKKMAEDLTAYLQELK--------------  469

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLT  460
               S   +++   ++ E+++  + GT+++LV  ++  EGLDIP C +V          L 
Sbjct  470  YKTSYLHSNVHTLERIEILRDLRQGTIDVLVGINLLREGLDIPECGLVAILDADKEGFLR  529

Query  461  NEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA  520
            +E+S++Q  GRA  + +    +  +   ++ + +     ETL  + +             
Sbjct  530  SEVSLIQTIGRAARNSAGRVILYAD---KMTKSIDKAVSETLRRRQIQQEYNEKHGIIPK  586

Query  521  KIRD  524
             I  
Sbjct  587  TINR  590


>sp|B0BWK0|UVRB_RICRO UvrABC system protein B OS=Rickettsia rickettsii 
(strain Iowa) OX=452659 GN=uvrB PE=3 SV=1
Length=661

 Score = 86.4 bits (212),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 36/184 (20%), Positives = 76/184 (41%), Gaps = 24/184 (13%)

Query  346  PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
            P   ++E L   +Q     +   R ++ T T++ A  L  +LQ+ +              
Sbjct  426  PATNQVEDLISEIQTT--IAQGFRVLVTTLTKKMAEDLTAYLQELK--------------  469

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLT  460
               S   +++   ++ E+++  + GT+++LV  ++  EGLDIP C +V          L 
Sbjct  470  YKTSYLHSNVHTLERIEILRDLRQGTIDVLVGINLLREGLDIPECGLVAILDADKEGFLR  529

Query  461  NEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA  520
            +E+S++Q  GRA  + +    +  +   ++ + +     ETL  + +             
Sbjct  530  SEVSLIQTIGRAARNSAGRVILYAD---KMTKSIDKAVSETLRRRQIQQEYNEKHGIIPK  586

Query  521  KIRD  524
             I  
Sbjct  587  TINR  590


>sp|Q03532|HAS1_YEAST ATP-dependent RNA helicase HAS1 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=HAS1 
PE=1 SV=1
Length=505

 Score = 86.0 bits (211),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 52/170 (31%), Gaps = 17/170 (10%)

Query  357  ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT  416
            +L      +   + I+F  +  S       L        +D+    L G           
Sbjct  279  LLFSFLKRNQKKKIIVFLSSCNSVKYYAELL------NYIDLPVLELHG--------KQK  324

Query  417  QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQ  476
            Q+ +     +F +    +L+ T VA  GLDIP  + ++++    +    +   GR     
Sbjct  325  QQKRTNTFFEFCNAERGILICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGT  384

Query  477  SVY---AFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIR  523
                      T       R L    +     +         Q++ +  I+
Sbjct  385  KGKGKSLMFLTPNELGFLRYLKASKVPLNEYEFPENKIANVQSQLEKLIK  434


 Score = 56.3 bits (134),  Expect = 7e-07, Method: Composition-based stats.
 Identities = 28/135 (21%), Positives = 49/135 (36%), Gaps = 9/135 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT---RAAAYVAKRHLETVD--GAKVVVLVNRVHLVT  61
            Q   I P L G++++    TG+GKT      A      L+     G  ++V+     L  
Sbjct  69   QARTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIELLHSLKFKPRNGTGIIVITPTRELAL  128

Query  62   QHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
            Q     R +++        + G    R     L +  ++LI T   L   L + +     
Sbjct  129  QIFGVARELMEFHSQTFGIVIGGANRRQEAEKLMKGVNMLIATPGRLLDHLQNTKGFVFK  188

Query  121  ELTVFSLIVVDECHH  135
             L     +++DE   
Sbjct  189  NLKA---LIIDEADR  200


>sp|Q3JC03|UVRB_NITOC UvrABC system protein B OS=Nitrosococcus 
oceani (strain ATCC 19707 / BCRC 17464 / JCM 30415 / NCIMB 
11848 / C-107) OX=323261 GN=uvrB PE=3 SV=1
Length=687

 Score = 86.4 bits (212),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 91/215 (42%), Gaps = 22/215 (10%)

Query  346  PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
            P   +++ L   +++   ++   R ++   T++ A  L  +L+Q +      +R + L  
Sbjct  426  PAGSQVDDLLSEIRQ--RTAADERVLVTVLTKRMAEDLTQYLEQHE------VRVRYL--  475

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLT  460
                   + +   ++ E+I+  + G  ++LV  ++  EGLDIP  ++V          L 
Sbjct  476  ------HSDIDTVERVEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLR  529

Query  461  NEISMVQARGRARADQSVYAFVATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQ  519
            +E S++Q  GRA  +    A +  +  +  + R +         + A     ++     Q
Sbjct  530  SERSLIQTIGRAARNLHGRAILYGDKVTGSMGRAIAETERRRKKQLAFNETHRIIPRGIQ  589

Query  520  AKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQL  554
              +R++     T  + +  +  ++ ++   E+ +L
Sbjct  590  KAVREIIDGVYTPGSGKGHRSPDRVEEKAAEYTRL  624


 Score = 36.3 bits (82),  Expect = 0.99, Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 16/48 (33%), Gaps = 5/48 (10%)

Query  26  TGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDG  73
           TG+GKT          ++ V    +V L     L  Q   E R     
Sbjct  41  TGSGKTFT----IANMIQQVQRPTIV-LAPNKTLAAQLYSEMREFFPR  83


>sp|P0C218|DDX20_DANRE Probable ATP-dependent RNA helicase DDX20 
OS=Danio rerio OX=7955 GN=ddx20 PE=3 SV=1
Length=761

 Score = 86.4 bits (212),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 81/233 (35%), Gaps = 25/233 (11%)

Query  264  KLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCA  323
            KL E  + +  QEQ  +       N  +L        ++LA     Y RE  T  ++   
Sbjct  179  KLLEDDSSSSFQEQINWIYSSLPANKQMLALSATYP-ESLAQQLSRYMREP-TFVRLNPT  236

Query  324  ERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSL  383
            +  LL L    K     + +H   +   E   + L   FS     + ++F+     A  L
Sbjct  237  DPGLLGL----KQYYKIVPSHSLPHKVFEEKVQSLLELFSKIPFNQALVFSNLHTRAQHL  292

Query  384  LLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEE  443
               L  +              G      S  ++Q  + E + K +     +L++T +   
Sbjct  293  ADILSSK--------------GLPAVCISGGLSQDQRLEAMWKLKQYQCRVLISTDLTSR  338

Query  444  GLDIPHCNVVVRYGLLTNEISMVQARGRARADQS-----VYAFVATEGSRELK  491
            G+D    N+V+   +  +  + +   GRA    +      Y     E ++ + 
Sbjct  339  GIDAEKVNLVINLDVPQDWETYMHRIGRAGRFGTLGVAVTYCCHGEEENKMMA  391


>sp|Q7V9M1|UVRB_PROMA UvrABC system protein B OS=Prochlorococcus 
marinus (strain SARG / CCMP1375 / SS120) OX=167539 GN=uvrB 
PE=3 SV=1
Length=677

 Score = 86.4 bits (212),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 39/173 (23%), Positives = 72/173 (42%), Gaps = 25/173 (14%)

Query  338  LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD  397
            L  L    P   ++E L   ++    S    R +I T T++ A  L  +L +       D
Sbjct  417  LDPLVEVRPTKGQVEDLLDEIRE--RSRKKQRVLITTLTKRMAEDLTDYLSEN------D  468

Query  398  IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG  457
            +R + L         + +   ++ E+IQ  + G  ++LV  ++  EGLD+P  ++VV   
Sbjct  469  VRVRYL--------HSEIHSIERIEIIQDLRMGEYDVLVGVNLLREGLDLPEVSLVVILD  520

Query  458  -----LLTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQ  505
                  L  E S++Q  GRA       A +  +       + + +A+E    +
Sbjct  521  ADKEGFLRAERSLIQTIGRAARHIEGKALLYADNF----TDSMKKAIEETERR  569


>sp|Q7VXH4|UVRB_BORPE UvrABC system protein B OS=Bordetella pertussis 
(strain Tohama I / ATCC BAA-589 / NCTC 13251) OX=257313 
GN=uvrB PE=3 SV=1
Length=678

 Score = 86.4 bits (212),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 83/222 (37%), Gaps = 21/222 (9%)

Query  289  DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPEN  348
             + L +  +R  +  A ++                   ++         +  +    P +
Sbjct  378  PSALDNRPLRLEEFEARMRQCVFVSATPAAYEQEHADNVVEQVVRPTGLVDPIVEVRPAH  437

Query  349  PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN  408
             +++ L   + +   ++   R ++ T T++ A  L  +L +               G   
Sbjct  438  TQVDDLLGEIHK--RAALQERVLVTTLTKRMAEDLTDFLSE--------------HGVRV  481

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEI  463
                + +   ++ E+I+  + G  ++LV  ++  EGLDIP  ++V          L +E 
Sbjct  482  RYLHSDIDTVERVEIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSER  541

Query  464  SMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQ  505
            S++Q  GRA  + +  A +  +   +  R  I+E      +Q
Sbjct  542  SLIQTIGRAARNLNGRAILYADRITDSMRRAIDETERRRAKQ  583


>sp|Q4UKL6|UVRB_RICFE UvrABC system protein B OS=Rickettsia felis 
(strain ATCC VR-1525 / URRWXCal2) OX=315456 GN=uvrB PE=3 
SV=1
Length=661

 Score = 86.4 bits (212),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 38/203 (19%), Positives = 80/203 (39%), Gaps = 22/203 (11%)

Query  346  PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
            P   ++E L   +Q     +   R ++ T T++ A  L  +LQ+ +              
Sbjct  426  PATNQVEDLIGEIQAT--IAKGFRVLVTTLTKKMAEDLTAYLQELK--------------  469

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLT  460
               S   +++   ++ E+++  + GT+++LV  ++  EGLDIP C +V          L 
Sbjct  470  YKTSYLHSNIHTLERIEILRDLRQGTIDILVGINLLREGLDIPECGLVAILDADKEGFLR  529

Query  461  NEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQ  519
            +E+S++Q  GR AR  +      A + ++ + + +   +    ++Q       +      
Sbjct  530  SEVSLIQTIGRAARNSEGRVILYADKMTKSIDKAMSETSRRRQIQQEYNEKHGIIPKTIN  589

Query  520  AKIRDLQQAALTKRAAQAAQREN  542
              I  L +           Q   
Sbjct  590  RAIHALAELEKVDSKLDKKQAHT  612


>sp|Q07XC8|RAPA_SHEFN RNA polymerase-associated protein RapA OS=Shewanella 
frigidimarina (strain NCIMB 400) OX=318167 GN=rapA 
PE=3 SV=1
Length=968

 Score = 86.8 bits (213),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 76/452 (17%), Positives = 155/452 (34%), Gaps = 40/452 (9%)

Query  27   GAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGP  86
            G GKT  A  +  + L T    +++V+V    L  Q   E  R  + R++V      +  
Sbjct  179  GLGKTIEAGLIIHQQLLTGRAERILVIVPD-TLRHQWLVEMLRRFNLRFSVFDEDRCVEA  237

Query  87   RAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHT--HKDTVYNV  144
             A   +      L+IC+       L   +  E      + L+VVDE HH    +D     
Sbjct  238  YADNDNPFYTEQLIICS----LDLLRKKKRLEQAVDADWDLMVVDEAHHLEWSEDAPSRA  293

Query  145  IMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCC  204
                  ++    ++ +P VL LTA+P         G  +H  +L   LD           
Sbjct  294  -----YKIVEALSEVVPGVLLLTATP------DQLGHQSHFARL-RLLDPDRFYDYDAFL  341

Query  205  PQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVK  264
             +  E S +   +      + +      +  L + + +    P + R   ++  + +  +
Sbjct  342  AE--EASYKDVAEAAEALSQDKKLPDSAINSLTELLSEKDIEPSI-RLIQSKDVDAESQQ  398

Query  265  LSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAE  324
             +    L  L ++      L R + A +     R  +A        +        ++ + 
Sbjct  399  AARQELLQELLDRHGTGRVLYRNSRASVKGFPKRLFNAYPHDMPAQYVTAERVNAMMGSA  458

Query  325  RRLLALFDDRKNELAHLATHGPENP---KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAH  381
            ++  A      +          ++    K +     L     S  S + +I     ++A 
Sbjct  459  KQPQAKAAQALSPEKLYQAFENDSASWWKFDPRVDWLIEFLKSHRSKKVLIIASQAETAL  518

Query  382  SLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF--QDGTLNLLVATS  439
            SL   L+ ++G+Q                    M+  ++ +    F  ++G    L+ + 
Sbjct  519  SLEEALRTREGIQATVFH-------------EDMSIIERDKAGAYFAQEEGGAQALICSE  565

Query  440  VAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
            +  EG +    + ++ + L  N   + Q  GR
Sbjct  566  IGSEGRNFQFASHLILFDLPLNPDLLEQRIGR  597


>sp|P75433|T1R3_MYCPN Putative type I restriction enzyme MpnIIP 
endonuclease subunit C-terminal part OS=Mycoplasma pneumoniae 
(strain ATCC 29342 / M129 / Subtype 1) OX=272634 GN=MPN_345 
PE=5 SV=1
Length=206

 Score = 81.4 bits (199),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 62/163 (38%), Gaps = 18/163 (11%)

Query  3    LRSYQWEVIMPALEG-----------KN----IIIWLPTGAGKTRAAAYVAKRHLETVDG  47
            +R YQ       LE            KN      IW  TG+GKT  +    +   E    
Sbjct  46   MRPYQICATERILEKIKEDNRNSKNSKNASKGGCIWHSTGSGKTLTSFKAVQLASEIDFV  105

Query  48   AKVVVLVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELL  107
             KV+ +V+R  L  Q  EE+ +   G  + T  + D+  +      A     ++ T   L
Sbjct  106  DKVLFVVDRKDLDNQTIEEYEKFQAGSVSETENTNDLKEKILDDSTAT--RAIVTTIHKL  163

Query  108  QMALTSPEEEEHVELTVFS-LIVVDECHHTHKDTVYNVIMSQY  149
            +  +    + +  +L   + +++ DECH +    +   I   +
Sbjct  164  KRLIDQRSKLKDEDLKKKNIVLIFDECHRSQFGKMKQEIDEFF  206


>sp|B2UZZ0|UVRB_CLOBA UvrABC system protein B OS=Clostridium botulinum 
(strain Alaska E43 / Type E3) OX=508767 GN=uvrB PE=3 
SV=1
Length=657

 Score = 86.4 bits (212),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 89/258 (34%), Gaps = 22/258 (9%)

Query  304  AALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFS  363
              +              L   + +          L       P   +++ L   +Q   S
Sbjct  383  KKINQVMFVSATPAQYELEHSQSIAEQVIRPTGLLDPEIIIKPVKGQIDDLYTEIQETIS  442

Query  364  SSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEV  423
                 R +I T T++ A  L  ++ +              +G   +   + +   ++ ++
Sbjct  443  R--GYRILITTLTKRMAEDLTKYMIE--------------LGVKATYMHSDIDTIERMKI  486

Query  424  IQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGR-ARADQS  477
            I+  + G  ++LV  ++  EGLDIP   +V          L +E S++Q  GR AR  +S
Sbjct  487  IRDLRLGEYDVLVGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGRAARNSES  546

Query  478  VYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQA  537
                 A   ++ +K+ +        ++        +       ++RDL +A      +  
Sbjct  547  KVIMYADNITKSMKKAISETERRRKIQTEYNEEHGIIPQTINKEVRDLIEATKVAEESTE  606

Query  538  AQRENQRQQFPVEHVQLL  555
               E  +     E  +L+
Sbjct  607  YGIEATKSLTKKEVKKLI  624


 Score = 33.2 bits (74),  Expect = 8.5, Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 7/65 (11%)

Query  8   WEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEF  67
            + I    E + ++    TG+GKT   A + ++          ++L +   L  Q   EF
Sbjct  24  LKSIKKGNEFQTLLGV--TGSGKTFTMANIIEKLQRPT-----LILAHNKTLAAQLCSEF  76

Query  68  RRMLD  72
           +    
Sbjct  77  KEFFP  81


>sp|Q94C75|RH25_ARATH DEAD-box ATP-dependent RNA helicase 25 OS=Arabidopsis 
thaliana OX=3702 GN=RH25 PE=2 SV=2
Length=563

 Score = 86.0 bits (211),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 48/326 (15%), Positives = 107/326 (33%), Gaps = 37/326 (11%)

Query  152  LKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHS  211
                R    P ++ L   P    A +     N +L+   ++    ++       + +   
Sbjct  146  PPASRDNRHPPIIVLVVCPTRELACQAAAEANILLKYHPSIGVQVVIGGTKLPTEQRRLQ  205

Query  212  QQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAAL  271
            + PC+       R +D   +            +++  L       + +    +  E    
Sbjct  206  KSPCQILVATPGRLKDHIDNTSG--FATRLMGVKVLVLDE--ADHLLDMGFRREIERIIA  261

Query  272  AGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALF  331
            A  ++++ +         +  + D VR +  +A  +D      V +      ++      
Sbjct  262  AVPKQRQTFLF-------SATVSDEVRQICHVALKRDHEFVNCVQEGAGETHQKVSQMYM  314

Query  332  DDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQ  391
                  +A L  H        +L  +L++  + +   + IIF  T      L+  L  + 
Sbjct  315  ------IASLDRH------FSLLYGLLKKHITDNVGYKVIIFC-TTAMVTRLVADLLGKL  361

Query  392  GLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN  451
             L   +I              +   Q  +  V  +F+     +LV + V+  G+D P  +
Sbjct  362  SLNVREIH-------------SRKPQSYRTRVSDEFRKSKSIILVTSDVSARGVDYPDVS  408

Query  452  VVVRYGLLTNEISMVQARGRARADQS  477
            +VV+ GL ++    +   GR      
Sbjct  409  LVVQMGLPSDREQYIHRLGRTGRKGK  434


 Score = 53.3 bits (126),  Expect = 6e-06, Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 49/134 (37%), Gaps = 15/134 (11%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYV--AKRHLETVDGAK--------VVVLVNRVHLVTQHG  64
            L+GK+I+    TG GKT  A  +   +  ++    ++        V+V+     L  Q  
Sbjct  115  LQGKDILAKAKTGTGKT-VAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQAA  173

Query  65   EEFRRMLDGRWTVT---TLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVE  121
             E   +L    ++     + G   P            +L+ T   L+  + +        
Sbjct  174  AEANILLKYHPSIGVQVVIGGTKLPTEQRRLQKSPCQILVATPGRLKDHIDNTSGFA-TR  232

Query  122  LTVFSLIVVDECHH  135
            L    ++V+DE  H
Sbjct  233  LMGVKVLVLDEADH  246


>sp|Q5ZHZ0|DX39B_CHICK Spliceosome RNA helicase DDX39B OS=Gallus 
gallus OX=9031 GN=DDX39B PE=2 SV=1
Length=428

 Score = 85.2 bits (209),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 33/199 (17%), Positives = 69/199 (35%), Gaps = 29/199 (15%)

Query  310  YHREHVTKTQILCAERRLLALFDDRKNELAHLATHG--------PENPKLEMLEKILQRQ  361
                 ++K       + +    +   ++   L  HG         +N K   L  +L   
Sbjct  226  MFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVL  285

Query  362  FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ  421
                   + +IF ++ Q   +L   L +Q                   +    M Q ++ 
Sbjct  286  ----EFNQVVIFVKSVQRCIALAQLLVEQNFPAI--------------AIHRGMPQEERL  327

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQS---V  478
               Q+F+D    +LVAT++   G+DI   N+   Y +  +  + +    RA    +    
Sbjct  328  SRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLA  387

Query  479  YAFVATEGSRELKRELINE  497
              FV+ E   ++  ++ + 
Sbjct  388  ITFVSDENDAKILNDVQDR  406


 Score = 48.6 bits (114),  Expect = 1e-04, Method: Composition-based stats.
 Identities = 26/131 (20%), Positives = 47/131 (36%), Gaps = 8/131 (6%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQ---  62
            Q E I  A+ G +++    +G GKT        + LE V G   V+V+ +   L  Q   
Sbjct  72   QHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISK  131

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
              E F + +          G    +        C  +++ T       + +    + + L
Sbjct  132  EYERFSKYMPSVKVAVFFGGLAVKKDEEVLKKNCPHIVVGTP----GRILALARNKSLNL  187

Query  123  TVFSLIVVDEC  133
                  ++DEC
Sbjct  188  KHIKHFILDEC  198


>sp|Q815I3|UVRB_BACCR UvrABC system protein B OS=Bacillus cereus 
(strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 
15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711) OX=226900 GN=uvrB 
PE=3 SV=1
Length=658

 Score = 86.0 bits (211),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 78/199 (39%), Gaps = 20/199 (10%)

Query  365  SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI  424
            + + R +I T T++ +  L  +L+               +G   +   + +   ++ E+I
Sbjct  443  AKNERVLITTLTKKMSEDLTDYLKD--------------VGIKVTYLHSEIKTLERIEII  488

Query  425  QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGR-ARADQSV  478
            +  + G  ++LV  ++  EGLDIP  ++V          L +E S++Q  GR AR +   
Sbjct  489  RDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNENGR  548

Query  479  YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA  538
                A   ++ +   +        +++A      +     Q  +RD+ +A       +  
Sbjct  549  VIMYADRITKSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAEEIETY  608

Query  539  QRENQRQQFPVEHVQLLCI  557
            +    ++    E  + +  
Sbjct  609  EATPAKKMTKKEREKTIAK  627


>sp|Q6FY67|MAK5_CANGA ATP-dependent RNA helicase MAK5 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=MAK5 PE=3 SV=1
Length=733

 Score = 86.4 bits (212),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 53/134 (40%), Gaps = 23/134 (17%)

Query  361  QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ  420
             F +      +IF  + +S   L  +L                +G  +    + MTQ+++
Sbjct  433  YFVTLYPGTTLIFCNSIESVKKLNAYLIN--------------LGINSFQIHSSMTQKNR  478

Query  421  QEVIQKFQD--------GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-  471
             + ++KF+         G   +L+A+ VA  GLDI     VV Y L  +  + +   GR 
Sbjct  479  LKNLEKFEAMASKNNHLGKPTVLIASDVAARGLDIKGIKHVVHYHLPHSADTYIHRSGRT  538

Query  472  ARADQSVYAFVATE  485
            AR D    A +   
Sbjct  539  ARGDNEGVAVMICS  552


 Score = 52.1 bits (123),  Expect = 1e-05, Method: Composition-based stats.
 Identities = 29/148 (20%), Positives = 58/148 (39%), Gaps = 11/148 (7%)

Query  2    ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAA-AYVAKRHLETVDGAKV--VVLVNRVH  58
            E+   Q   I  ALEGK+I+    TG+GKT A    + ++ +++ D  +   ++      
Sbjct  177  EMTPIQKLSIPAALEGKDIMGKASTGSGKTLAYGIPIIEKMIKSKDNLRTNGIIFTPTRE  236

Query  59   LVTQHGEEFRRM-----LDGRWTVTTLSGDMGPRAGFGHLA--RCHDLLICTAELLQMAL  111
            L  Q  +  + +         + + +L+G +  +     L       +++ T       L
Sbjct  237  LAQQVTKHLQNVCSMLLKKNPYMILSLTGGLSIQKQERLLKYDGSARIVVATPGRFLE-L  295

Query  112  TSPEEEEHVELTVFSLIVVDECHHTHKD  139
                EE         ++V+DE     +D
Sbjct  296  IEKNEELMKRFAKIDVLVLDEADRLLQD  323


>sp|Q3T147|DX39B_BOVIN Spliceosome RNA helicase DDX39B OS=Bos 
taurus OX=9913 GN=DDX39B PE=2 SV=1
Length=428

 Score = 84.8 bits (208),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 33/199 (17%), Positives = 69/199 (35%), Gaps = 29/199 (15%)

Query  310  YHREHVTKTQILCAERRLLALFDDRKNELAHLATHG--------PENPKLEMLEKILQRQ  361
                 ++K       + +    +   ++   L  HG         +N K   L  +L   
Sbjct  226  MFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVL  285

Query  362  FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ  421
                   + +IF ++ Q   +L   L +Q                   +    M Q ++ 
Sbjct  286  ----EFNQVVIFVKSVQRCIALAQLLVEQNFPAI--------------AIHRGMPQEERL  327

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQS---V  478
               Q+F+D    +LVAT++   G+DI   N+   Y +  +  + +    RA    +    
Sbjct  328  SRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLA  387

Query  479  YAFVATEGSRELKRELINE  497
              FV+ E   ++  ++ + 
Sbjct  388  ITFVSDENDAKILNDVQDR  406


 Score = 48.6 bits (114),  Expect = 1e-04, Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 50/132 (38%), Gaps = 10/132 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQ---  62
            Q E I  A+ G +++    +G GKT        + LE V G   V+V+ +   L  Q   
Sbjct  72   QHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISK  131

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCH-DLLICTAELLQMALTSPEEEEHVE  121
              E F + +     V    G +  +     L +    +++ T       + +    + + 
Sbjct  132  EYERFSKYMP-SVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTP----GRILALARNKSLN  186

Query  122  LTVFSLIVVDEC  133
            L      ++DEC
Sbjct  187  LKHIKHFILDEC  198


>sp|Q5RE47|DX39B_PONAB Spliceosome RNA helicase DDX39B OS=Pongo 
abelii OX=9601 GN=DDX39B PE=2 SV=1
Length=428

 Score = 84.8 bits (208),  Expect = 4e-16, Method: Composition-based stats.
 Identities = 33/199 (17%), Positives = 69/199 (35%), Gaps = 29/199 (15%)

Query  310  YHREHVTKTQILCAERRLLALFDDRKNELAHLATHG--------PENPKLEMLEKILQRQ  361
                 ++K       + +    +   ++   L  HG         +N K   L  +L   
Sbjct  226  MFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVL  285

Query  362  FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ  421
                   + +IF ++ Q   +L   L +Q                   +    M Q ++ 
Sbjct  286  ----EFNQVVIFVKSVQRCIALAQLLVEQNFPAI--------------AIHRGMPQEERL  327

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQS---V  478
               Q+F+D    +LVAT++   G+DI   N+   Y +  +  + +    RA    +    
Sbjct  328  SRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLA  387

Query  479  YAFVATEGSRELKRELINE  497
              FV+ E   ++  ++ + 
Sbjct  388  ITFVSDENDAKILNDVQDR  406


 Score = 48.3 bits (113),  Expect = 2e-04, Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 50/132 (38%), Gaps = 10/132 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQ---  62
            Q E I  A+ G +++    +G GKT        + LE V G   V+V+ +   L  Q   
Sbjct  72   QHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISK  131

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCH-DLLICTAELLQMALTSPEEEEHVE  121
              E F + +     V    G +  +     L +    +++ T       + +    + + 
Sbjct  132  EYERFSKYMPN-VKVAVFFGGLSIKKDEEVLKKNCPHIVVGTP----GRILALARNKSLN  186

Query  122  LTVFSLIVVDEC  133
            L      ++DEC
Sbjct  187  LKHIKHFILDEC  198


>sp|Q29024|DX39B_PIG Spliceosome RNA helicase DDX39B OS=Sus scrofa 
OX=9823 GN=DDX39B PE=3 SV=2
Length=428

 Score = 84.8 bits (208),  Expect = 4e-16, Method: Composition-based stats.
 Identities = 33/199 (17%), Positives = 69/199 (35%), Gaps = 29/199 (15%)

Query  310  YHREHVTKTQILCAERRLLALFDDRKNELAHLATHG--------PENPKLEMLEKILQRQ  361
                 ++K       + +    +   ++   L  HG         +N K   L  +L   
Sbjct  226  MFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVL  285

Query  362  FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ  421
                   + +IF ++ Q   +L   L +Q                   +    M Q ++ 
Sbjct  286  ----EFNQVVIFVKSVQRCIALAQLLVEQNFPAI--------------AIHRGMPQEERL  327

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQS---V  478
               Q+F+D    +LVAT++   G+DI   N+   Y +  +  + +    RA    +    
Sbjct  328  SRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLA  387

Query  479  YAFVATEGSRELKRELINE  497
              FV+ E   ++  ++ + 
Sbjct  388  ITFVSDENDAKILNDVQDR  406


 Score = 48.3 bits (113),  Expect = 2e-04, Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 50/132 (38%), Gaps = 10/132 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQ---  62
            Q E I  A+ G +++    +G GKT        + LE V G   V+V+ +   L  Q   
Sbjct  72   QHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISK  131

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCH-DLLICTAELLQMALTSPEEEEHVE  121
              E F + +     V    G +  +     L +    +++ T       + +    + + 
Sbjct  132  EYERFSKYMPN-VKVAVFFGGLSIKKDEEVLKKNCPHIVVGTP----GRILALARNKSLN  186

Query  122  LTVFSLIVVDEC  133
            L      ++DEC
Sbjct  187  LKHIKHFILDEC  198


>sp|P60024|DX39B_PANTR Spliceosome RNA helicase DDX39B OS=Pan 
troglodytes OX=9598 GN=DDX39B PE=3 SV=1
Length=428

 Score = 84.8 bits (208),  Expect = 4e-16, Method: Composition-based stats.
 Identities = 33/199 (17%), Positives = 69/199 (35%), Gaps = 29/199 (15%)

Query  310  YHREHVTKTQILCAERRLLALFDDRKNELAHLATHG--------PENPKLEMLEKILQRQ  361
                 ++K       + +    +   ++   L  HG         +N K   L  +L   
Sbjct  226  MFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVL  285

Query  362  FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ  421
                   + +IF ++ Q   +L   L +Q                   +    M Q ++ 
Sbjct  286  ----EFNQVVIFVKSVQRCIALAQLLVEQNFPAI--------------AIHRGMPQEERL  327

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQS---V  478
               Q+F+D    +LVAT++   G+DI   N+   Y +  +  + +    RA    +    
Sbjct  328  SRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLA  387

Query  479  YAFVATEGSRELKRELINE  497
              FV+ E   ++  ++ + 
Sbjct  388  ITFVSDENDAKILNDVQDR  406


 Score = 48.3 bits (113),  Expect = 2e-04, Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 50/132 (38%), Gaps = 10/132 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQ---  62
            Q E I  A+ G +++    +G GKT        + LE V G   V+V+ +   L  Q   
Sbjct  72   QHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISK  131

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCH-DLLICTAELLQMALTSPEEEEHVE  121
              E F + +     V    G +  +     L +    +++ T       + +    + + 
Sbjct  132  EYERFSKYMPN-VKVAVFFGGLSIKKDEEVLKKNCPHIVVGTP----GRILALARNKSLN  186

Query  122  LTVFSLIVVDEC  133
            L      ++DEC
Sbjct  187  LKHIKHFILDEC  198


>sp|Q5TM17|DX39B_MACMU Spliceosome RNA helicase DDX39B OS=Macaca 
mulatta OX=9544 GN=DDX39B PE=3 SV=1
Length=428

 Score = 84.8 bits (208),  Expect = 4e-16, Method: Composition-based stats.
 Identities = 33/199 (17%), Positives = 69/199 (35%), Gaps = 29/199 (15%)

Query  310  YHREHVTKTQILCAERRLLALFDDRKNELAHLATHG--------PENPKLEMLEKILQRQ  361
                 ++K       + +    +   ++   L  HG         +N K   L  +L   
Sbjct  226  MFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVL  285

Query  362  FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ  421
                   + +IF ++ Q   +L   L +Q                   +    M Q ++ 
Sbjct  286  ----EFNQVVIFVKSVQRCIALAQLLVEQNFPAI--------------AIHRGMPQEERL  327

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQS---V  478
               Q+F+D    +LVAT++   G+DI   N+   Y +  +  + +    RA    +    
Sbjct  328  SRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLA  387

Query  479  YAFVATEGSRELKRELINE  497
              FV+ E   ++  ++ + 
Sbjct  388  ITFVSDENDAKILNDVQDR  406


 Score = 48.3 bits (113),  Expect = 2e-04, Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 50/132 (38%), Gaps = 10/132 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQ---  62
            Q E I  A+ G +++    +G GKT        + LE V G   V+V+ +   L  Q   
Sbjct  72   QHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISK  131

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCH-DLLICTAELLQMALTSPEEEEHVE  121
              E F + +     V    G +  +     L +    +++ T       + +    + + 
Sbjct  132  EYERFSKYMPN-VKVAVFFGGLSIKKDEEVLKKNCPHIVVGTP----GRILALARNKSLN  186

Query  122  LTVFSLIVVDEC  133
            L      ++DEC
Sbjct  187  LKHIKHFILDEC  198


>sp|Q13838|DX39B_HUMAN Spliceosome RNA helicase DDX39B OS=Homo 
sapiens OX=9606 GN=DDX39B PE=1 SV=1
Length=428

 Score = 84.8 bits (208),  Expect = 4e-16, Method: Composition-based stats.
 Identities = 33/199 (17%), Positives = 69/199 (35%), Gaps = 29/199 (15%)

Query  310  YHREHVTKTQILCAERRLLALFDDRKNELAHLATHG--------PENPKLEMLEKILQRQ  361
                 ++K       + +    +   ++   L  HG         +N K   L  +L   
Sbjct  226  MFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVL  285

Query  362  FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ  421
                   + +IF ++ Q   +L   L +Q                   +    M Q ++ 
Sbjct  286  ----EFNQVVIFVKSVQRCIALAQLLVEQNFPAI--------------AIHRGMPQEERL  327

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQS---V  478
               Q+F+D    +LVAT++   G+DI   N+   Y +  +  + +    RA    +    
Sbjct  328  SRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLA  387

Query  479  YAFVATEGSRELKRELINE  497
              FV+ E   ++  ++ + 
Sbjct  388  ITFVSDENDAKILNDVQDR  406


 Score = 48.3 bits (113),  Expect = 2e-04, Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 50/132 (38%), Gaps = 10/132 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQ---  62
            Q E I  A+ G +++    +G GKT        + LE V G   V+V+ +   L  Q   
Sbjct  72   QHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISK  131

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCH-DLLICTAELLQMALTSPEEEEHVE  121
              E F + +     V    G +  +     L +    +++ T       + +    + + 
Sbjct  132  EYERFSKYMPN-VKVAVFFGGLSIKKDEEVLKKNCPHIVVGTP----GRILALARNKSLN  186

Query  122  LTVFSLIVVDEC  133
            L      ++DEC
Sbjct  187  LKHIKHFILDEC  198


>sp|Q4DCH3|JBP2_TRYCC Bifunctional helicase and thymine dioxygenase 
JBP2 OS=Trypanosoma cruzi (strain CL Brener) OX=353153 
GN=JBP2 PE=3 SV=1
Length=1086

 Score = 86.8 bits (213),  Expect = 4e-16, Method: Composition-based stats.
 Identities = 79/506 (16%), Positives = 159/506 (31%), Gaps = 54/506 (11%)

Query  10    VIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV-----TQHG  64
             V+    +G   +I L  G GKT  +  +   H+   +   V++L  ++ L       Q  
Sbjct  532   VVDRLSKGNGCVIALTMGLGKTLLSLALCYSHMYDQNPRDVLILAPKIVLTHWTGEKQKW  591

Query  65    EEFR---RMLDGRWTVTTLSGDMG----PRAGFGHLARCHDLLICTAELLQMALTSPEEE  117
             E++              ++S ++      +   G L R   + +   E ++  L      
Sbjct  592   EKYGLVFSHFVVSDGTDSVSFEIALKRYKQQLNGELPRTSHVFVINPEYIRTVLKKLT--  649

Query  118   EHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASK  177
                     SLI+VDE H               L+  L+  +   +V+ L+ +P    A +
Sbjct  650   GFRP----SLIIVDEGHRVSSKGSK-------LKDWLEGLRCTARVI-LSGTPVQNNAEE  697

Query  178   LDGAINHV-LQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKL  236
             L   I  +   + + L             +                R  Q+     +  +
Sbjct  698   LYRLIGWINSDVHSVLPPRVFTDLAGTINRYINGDDSALAAAVSAQRYIQEWMCSYVFSV  757

Query  237   MDQIHDHLEMPELSRKFGT--QMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALL--  292
             M      L    +   F +  +   +    +     L  ++       HL  +    L  
Sbjct  758   MKTDLPPLNDYIIICGFSSIQRKMLEDHFGMEGIDGLTSIKASEHRPYHLSTHPLCFLGF  817

Query  293   ---IHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELA--HLATHGPE  347
                ++ ++     L    +         +Q+       + L D+  + +    L      
Sbjct  818   ISGVYKSLNGNHKLTPEAEEELESQEYASQLYSLTEDDIGLIDECLSLVNSGFLTEFVGL  877

Query  348   NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG  407
             + K+ +L  IL          + IIF++   S   +   L     + +  IR +      
Sbjct  878   SGKMTVLISILHSI--REKKEKAIIFSQYVGSQDFISRTLTSFDIVSST-IRGRDCH---  931

Query  408   NSSQSTHMTQRDQQEVIQKFQDGT--LNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM  465
                         ++  I+KF++      LL++T +   GLD    N V+ +    N    
Sbjct  932   ----------ERRRRTIEKFREDEKITCLLLSTQIGAYGLDFTAANHVILWDSWWNPQVE  981

Query  466   VQARGRARADQSVYAFVATEGSRELK  491
              QA  RA       A +    + E +
Sbjct  982   SQAIARAYRRNQTRAVIVYRLASEFE  1007


>sp|Q5WR10|DX39B_CANLF Spliceosome RNA helicase DDX39B OS=Canis 
lupus familiaris OX=9615 GN=DDX39B PE=3 SV=1
Length=428

 Score = 84.8 bits (208),  Expect = 4e-16, Method: Composition-based stats.
 Identities = 33/199 (17%), Positives = 69/199 (35%), Gaps = 29/199 (15%)

Query  310  YHREHVTKTQILCAERRLLALFDDRKNELAHLATHG--------PENPKLEMLEKILQRQ  361
                 ++K       + +    +   ++   L  HG         +N K   L  +L   
Sbjct  226  MFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVL  285

Query  362  FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ  421
                   + +IF ++ Q   +L   L +Q                   +    M Q ++ 
Sbjct  286  ----EFNQVVIFVKSVQRCIALAQLLVEQNFPAI--------------AIHRGMPQEERL  327

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQS---V  478
               Q+F+D    +LVAT++   G+DI   N+   Y +  +  + +    RA    +    
Sbjct  328  SRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLA  387

Query  479  YAFVATEGSRELKRELINE  497
              FV+ E   ++  ++ + 
Sbjct  388  ITFVSDENDAKILNDVQDR  406


 Score = 48.3 bits (113),  Expect = 2e-04, Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 50/132 (38%), Gaps = 10/132 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQ---  62
            Q E I  A+ G +++    +G GKT        + LE V G   V+V+ +   L  Q   
Sbjct  72   QHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISK  131

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCH-DLLICTAELLQMALTSPEEEEHVE  121
              E F + +     V    G +  +     L +    +++ T       + +    + + 
Sbjct  132  EYERFSKYMPN-VKVAVFFGGLSIKKDEEVLKKNCPHIVVGTP----GRILALARNKSLN  186

Query  122  LTVFSLIVVDEC  133
            L      ++DEC
Sbjct  187  LKHIKHFILDEC  198


>sp|P38112|MAK5_YEAST ATP-dependent RNA helicase MAK5 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=MAK5 
PE=1 SV=1
Length=773

 Score = 86.4 bits (212),  Expect = 4e-16, Method: Composition-based stats.
 Identities = 49/292 (17%), Positives = 94/292 (32%), Gaps = 52/292 (18%)

Query  229  FGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN  288
            F +LL+K    I    ++  L      ++ +       E      L E+R    +    +
Sbjct  310  FLELLEKDNTLIKRFSKVNTLILDEADRLLQDGHFDEFEKIIKHLLVERRKNRENSEGSS  369

Query  289  DAL--LIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATH--  344
                 LI     ++D    L        V   +    E  L A+     +++   +    
Sbjct  370  KIWQTLIFSATFSIDLFDKLSS---SRQVKDRRFKNNEDELNAVIQHLMSKIHFNSKPVI  426

Query  345  ---GPENPKLEMLEKILQR-----------QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQ  390
                PE+     +++ L              F +      +IF     S   L ++L   
Sbjct  427  IDTNPESKVSSQIKESLIECPPLERDLYCYYFLTMFPGTTLIFCNAIDSVKKLTVYLNN-  485

Query  391  QGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN----------------L  434
                         +G       + MTQ+++ + +++F+  +                  +
Sbjct  486  -------------LGIPAFQIHSSMTQKNRLKSLERFKQQSAKQKTINHSNPDSVQLSTV  532

Query  435  LVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATE  485
            L+A+ VA  GLDIP    V+ Y L  +    +   GR ARA     + +   
Sbjct  533  LIASDVAARGLDIPGVQHVIHYHLPRSTDIYIHRSGRTARAGSEGVSAMICS  584


 Score = 50.6 bits (119),  Expect = 5e-05, Method: Composition-based stats.
 Identities = 47/347 (14%), Positives = 109/347 (31%), Gaps = 44/347 (13%)

Query  26   TGAGKTR-----AAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDG-----RW  75
            TG+GKT          +     +       ++      L  Q  +  +++ +      ++
Sbjct  217  TGSGKTLAYGIPIVEKLISNFSQKNKKPISLIFTPTRELAHQVTDHLKKICEPVLAKSQY  276

Query  76   TVTTLSG--DMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC  133
            ++ +L+G   +  +           ++I T       L   +       +  + +++DE 
Sbjct  277  SILSLTGGLSIQKQQRLLKYDNSGQIVIATPGRFLE-LLEKDNTLIKRFSKVNTLILDEA  335

Query  134  HHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLD  193
                +D  ++        L ++R +                 S+    I   L   A   
Sbjct  336  DRLLQDGHFDEFEKIIKHLLVERRK-------------NRENSEGSSKIWQTLIFSATFS  382

Query  194  TWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKF  253
                         L +      +  +   + ++D    +++ LM +IH + +   +    
Sbjct  383  I-----------DLFDKLSSSRQVKDRRFKNNEDELNAVIQHLMSKIHFNSKPVIIDTNP  431

Query  254  GTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHRE  313
             +++  Q    L E      L+        L  +    LI     A+D++  L  + +  
Sbjct  432  ESKVSSQIKESLIEC---PPLERDLYCYYFLTMFPGTTLIF--CNAIDSVKKLTVYLNNL  486

Query  314  HVTKTQILC--AERRLLALFDDRKNELAHLATHGPENPKLEMLEKIL  358
             +   QI     ++  L   +  K + A   T    NP    L  +L
Sbjct  487  GIPAFQIHSSMTQKNRLKSLERFKQQSAKQKTINHSNPDSVQLSTVL  533


>sp|C4K6N8|UVRB_HAMD5 UvrABC system protein B OS=Hamiltonella 
defensa subsp. Acyrthosiphon pisum (strain 5AT) OX=572265 GN=uvrB 
PE=3 SV=1
Length=671

 Score = 86.0 bits (211),  Expect = 4e-16, Method: Composition-based stats.
 Identities = 36/182 (20%), Positives = 77/182 (42%), Gaps = 20/182 (11%)

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
              R ++ T T++ A  L  +L +Q              G       + +   ++ E+I+ 
Sbjct  446  DERVLVTTLTKRMAEDLTEYLAEQ--------------GERVRYLHSDIDTVERVEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  + +  A 
Sbjct  492  LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAI  551

Query  482  VATEGSRELKRELINEALETLMEQ-AVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR  540
            +  +      ++ I+E      +Q +    + +   + + KIRD+ +   +    +A +R
Sbjct  552  LYGDKITVSMKKAIDETERRRKKQESYNKEKGIVPKKLEKKIRDILELGQSYTKGKARKR  611

Query  541  EN  542
              
Sbjct  612  TT  613


>sp|Q63413|DX39B_RAT Spliceosome RNA helicase Ddx39b OS=Rattus 
norvegicus OX=10116 GN=Ddx39b PE=2 SV=3
Length=428

 Score = 84.8 bits (208),  Expect = 4e-16, Method: Composition-based stats.
 Identities = 33/199 (17%), Positives = 69/199 (35%), Gaps = 29/199 (15%)

Query  310  YHREHVTKTQILCAERRLLALFDDRKNELAHLATHG--------PENPKLEMLEKILQRQ  361
                 ++K       + +    +   ++   L  HG         +N K   L  +L   
Sbjct  226  MFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVL  285

Query  362  FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ  421
                   + +IF ++ Q   +L   L +Q                   +    M Q ++ 
Sbjct  286  ----EFNQVVIFVKSVQRCIALAQLLVEQNFPAI--------------AIHRGMPQEERL  327

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQS---V  478
               Q+F+D    +LVAT++   G+DI   N+   Y +  +  + +    RA    +    
Sbjct  328  SRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLA  387

Query  479  YAFVATEGSRELKRELINE  497
              FV+ E   ++  ++ + 
Sbjct  388  ITFVSDENDAKILNDVQDR  406


 Score = 48.3 bits (113),  Expect = 2e-04, Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 50/132 (38%), Gaps = 10/132 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQ---  62
            Q E I  A+ G +++    +G GKT        + LE V G   V+V+ +   L  Q   
Sbjct  72   QHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISK  131

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCH-DLLICTAELLQMALTSPEEEEHVE  121
              E F + +     V    G +  +     L +    +++ T       + +    + + 
Sbjct  132  EYERFSKYMPN-VKVAVFFGGLSIKKDEEVLKKNCPHIVVGTP----GRILALARNKSLN  186

Query  122  LTVFSLIVVDEC  133
            L      ++DEC
Sbjct  187  LKHIKHFILDEC  198


>sp|Q9Z1N5|DX39B_MOUSE Spliceosome RNA helicase Ddx39b OS=Mus 
musculus OX=10090 GN=Ddx39b PE=1 SV=1
Length=428

 Score = 84.8 bits (208),  Expect = 4e-16, Method: Composition-based stats.
 Identities = 33/199 (17%), Positives = 69/199 (35%), Gaps = 29/199 (15%)

Query  310  YHREHVTKTQILCAERRLLALFDDRKNELAHLATHG--------PENPKLEMLEKILQRQ  361
                 ++K       + +    +   ++   L  HG         +N K   L  +L   
Sbjct  226  MFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVL  285

Query  362  FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ  421
                   + +IF ++ Q   +L   L +Q                   +    M Q ++ 
Sbjct  286  ----EFNQVVIFVKSVQRCIALAQLLVEQNFPAI--------------AIHRGMPQEERL  327

Query  422  EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQS---V  478
               Q+F+D    +LVAT++   G+DI   N+   Y +  +  + +    RA    +    
Sbjct  328  SRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLA  387

Query  479  YAFVATEGSRELKRELINE  497
              FV+ E   ++  ++ + 
Sbjct  388  ITFVSDENDAKILNDVQDR  406


 Score = 48.3 bits (113),  Expect = 2e-04, Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 50/132 (38%), Gaps = 10/132 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQ---  62
            Q E I  A+ G +++    +G GKT        + LE V G   V+V+ +   L  Q   
Sbjct  72   QHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISK  131

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCH-DLLICTAELLQMALTSPEEEEHVE  121
              E F + +     V    G +  +     L +    +++ T       + +    + + 
Sbjct  132  EYERFSKYMPN-VKVAVFFGGLSIKKDEEVLKKNCPHIVVGTP----GRILALARNKSLN  186

Query  122  LTVFSLIVVDEC  133
            L      ++DEC
Sbjct  187  LKHIKHFILDEC  198


>sp|Q9V0A9|HELS_PYRAB ATP-dependent DNA helicase Hel308 OS=Pyrococcus 
abyssi (strain GE5 / Orsay) OX=272844 GN=hel308 PE=3 
SV=1
Length=715

 Score = 86.0 bits (211),  Expect = 4e-16, Method: Composition-based stats.
 Identities = 40/170 (24%), Positives = 67/170 (39%), Gaps = 14/170 (8%)

Query  7    QWEVIMPA-LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q E +    LEG+N+++ +PT +GKT  A       L   +G K V +V    L  +   
Sbjct  28   QAEALTSGVLEGENLLVAIPTASGKTLIAEIAIANKL-LEEGGKAVYIVPLKALAEEKFR  86

Query  66   EFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF  125
            EF+        V   +GD   +  +      +D++I TAE     L          +   
Sbjct  87   EFKDWERLGLKVAMATGDYDSKDEW---LGKYDIIIATAEKFDSLL----RHGSSWIRDV  139

Query  126  SLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGA  175
             ++V+DE H               LE  + +     Q++GL+A+ G    
Sbjct  140  KMLVIDEIHLIGSRDRGAT-----LEFIITQMLGRAQIIGLSATIGNPEE  184


 Score = 40.6 bits (93),  Expect = 0.053, Method: Composition-based stats.
 Identities = 21/134 (16%), Positives = 46/134 (34%), Gaps = 27/134 (20%)

Query  370  GIIFTRTRQSAHSLL-------------------LWLQQQQGLQTVDIRAQLLIGAGNSS  410
             ++F   R+ A                         L +       + +    + +G + 
Sbjct  240  ALVFVNMRRKAEKTALELAKKVKNYLDRKELRELRELAESLEENPTNEKLAKALLSGVAF  299

Query  411  QSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVR-------YGLLTNEI  463
                + + ++  V   F+ G + ++VAT     G++ P   V++R       +G+    +
Sbjct  300  HHAGLGRDERVLVEDNFRKGLIKVVVATPTLSAGINTPAFRVIIRDTWRYSEFGMERIPV  359

Query  464  SMV-QARGRARADQ  476
              V Q  GRA   +
Sbjct  360  LEVQQMMGRAGRPR  373


>sp|Q6H601|RH22_ORYSJ DEAD-box ATP-dependent RNA helicase 22 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os09g0383400 PE=2 
SV=2
Length=577

 Score = 85.6 bits (210),  Expect = 4e-16, Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 58/132 (44%), Gaps = 17/132 (13%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            R ++FT T  +A+S+   LQ+              +G          +  ++ + +Q F+
Sbjct  428  RTMVFTNTVDAANSVSDILQR--------------VGVPCILYHRDSSLEERAKNLQSFR  473

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEG  486
            +    +LV T  A  GLD+P+ + V++       +  +   GR ARA QS     + TE 
Sbjct  474  ENG-GVLVCTDAAARGLDVPNVSHVIQAEFAACAVDFLHRVGRTARAGQSGIVTSLYTEA  532

Query  487  SRELKRELINEA  498
            +R+L R +    
Sbjct  533  NRDLVRAVRQAE  544


 Score = 51.0 bits (120),  Expect = 3e-05, Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 47/147 (32%), Gaps = 25/147 (17%)

Query  10   VIMPA-----LEGKNIIIWLPTGAGKTR------AAAYVAKRHLETVDGAK---------  49
            ++  A     L   ++I+   TG+GKT            +K        ++         
Sbjct  107  LVQAACIPHVLTTNDVIVAAETGSGKTHGYLVPLIEKLCSKSISAEDGNSQDVTSGSPNI  166

Query  50   VVVLVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQM  109
             +VL   V L  Q       ++D        +  +    G+  +    D+L+ T   L  
Sbjct  167  ALVLCPNVMLCEQVVRMANSLVDESGEPLKSAAAVCGPKGWPTV--RPDILVATPAALLN  224

Query  110  ALTSPEEEEHVE---LTVFSLIVVDEC  133
             L   + E+      L     IV DE 
Sbjct  225  YLFDYDPEKRRRERFLRNVKFIVFDEA  251


>sp|Q6CRF4|DBP4_KLULA ATP-dependent RNA helicase DBP4 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 
1267 / NRRL Y-1140 / WM37) OX=284590 GN=DBP4 PE=3 SV=1
Length=770

 Score = 86.0 bits (211),  Expect = 4e-16, Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 64/207 (31%), Gaps = 19/207 (9%)

Query  332  DDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQ  391
                  L       P   KL++L   ++         + I+F  + +  H +    ++ Q
Sbjct  258  SATPESLQQSYIEVPLPDKLDILFSFIKSHLK----SKLIVFLSSSKQVHFVYETFRKLQ  313

Query  392  GLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN  451
                         G           Q  + E + KF       L +T V   G+D P  +
Sbjct  314  P------------GISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVD  361

Query  452  VVVRYGLLTNEISMVQARGRA---RADQSVYAFVATEGSRELKRELINEALETLMEQAVA  508
             V++     +  + +   GRA     +      +  E      + L  + +E        
Sbjct  362  WVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEEEEGFLKRLKTKNIEPSRLNIKQ  421

Query  509  AVQKMDQAEYQAKIRDLQQAALTKRAA  535
            + +K  + + Q+ +    +     + A
Sbjct  422  SKKKSIKPQLQSLLFKDPELKYLGQKA  448


 Score = 54.4 bits (129),  Expect = 3e-06, Method: Composition-based stats.
 Identities = 24/136 (18%), Positives = 45/136 (33%), Gaps = 10/136 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAY------VAKRHLETVDGAKVVVLVNRVHLV  60
            Q E I  +L+G +++    TG+GKT  A        + +     +DG   +++     L 
Sbjct  68   QRESIPLSLKGHDVLGAAKTGSGKTL-AFLIPVIEKLYREKWTDMDGLGALIISPTRELA  126

Query  61   TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
             Q  E   ++         L                 ++LI T   +   +         
Sbjct  127  MQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERISRINILIGTPGRILQHMDQAVG---F  183

Query  121  ELTVFSLIVVDECHHT  136
              +   L+V+DE    
Sbjct  184  NTSNLQLLVLDEADRC  199


>sp|Q1RHI9|UVRB_RICBR UvrABC system protein B OS=Rickettsia bellii 
(strain RML369-C) OX=336407 GN=uvrB PE=3 SV=1
Length=661

 Score = 86.0 bits (211),  Expect = 4e-16, Method: Composition-based stats.
 Identities = 34/179 (19%), Positives = 71/179 (40%), Gaps = 20/179 (11%)

Query  370  GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD  429
             ++ T T++ A  L  +LQ+ +                 S   +++   ++ E+++  + 
Sbjct  448  VLVTTLTKKMAEDLTNYLQELK--------------YKTSYLHSNIHTLERIEILRDLRQ  493

Query  430  GTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGR-ARADQSVYAFVA  483
            GT+++LV  ++  EGLDIP C +V          L +E+S++Q  GR AR  +      A
Sbjct  494  GTIDILVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGRAARNSEGRVILYA  553

Query  484  TEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQREN  542
             + ++ + + +        ++Q       +        I  L +           Q  N
Sbjct  554  DKMTKSIDKAISETMRRRTIQQEHNEKYGIIPKTINRTIHALAELEKVDSKLDKKQTHN  612


>sp|P9WFC7|UVRB_MYCTU UvrABC system protein B OS=Mycobacterium 
tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=uvrB PE=1 
SV=2
Length=719

 Score = 86.0 bits (211),  Expect = 5e-16, Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 70/176 (40%), Gaps = 20/176 (11%)

Query  363  SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE  422
             +    R ++ T T++ A  L  +L +              +G       + +    + E
Sbjct  464  RADADQRVLVTTLTKKMAEDLTDYLLE--------------MGIRVRYLHSEVDTLRRVE  509

Query  423  VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQS  477
            ++++ + G  ++LV  ++  EGLD+P  ++V          L +  S++Q  GRA  + S
Sbjct  510  LLRQLRLGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSRSLIQTIGRAARNVS  569

Query  478  VYAFVATEGSRELKRELINEALETLMEQ-AVAAVQKMDQAEYQAKIRDLQQAALTK  532
                +  +   +  RE I+E      +Q A      +D    + KI D+      +
Sbjct  570  GEVHMYADKITDSMREAIDETERRRAKQIAYNEANGIDPQPLRKKIADILDQVYRE  625


>sp|P9WFC6|UVRB_MYCTO UvrABC system protein B OS=Mycobacterium 
tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=uvrB PE=3 
SV=2
Length=719

 Score = 86.0 bits (211),  Expect = 5e-16, Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 70/176 (40%), Gaps = 20/176 (11%)

Query  363  SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE  422
             +    R ++ T T++ A  L  +L +              +G       + +    + E
Sbjct  464  RADADQRVLVTTLTKKMAEDLTDYLLE--------------MGIRVRYLHSEVDTLRRVE  509

Query  423  VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQS  477
            ++++ + G  ++LV  ++  EGLD+P  ++V          L +  S++Q  GRA  + S
Sbjct  510  LLRQLRLGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSRSLIQTIGRAARNVS  569

Query  478  VYAFVATEGSRELKRELINEALETLMEQ-AVAAVQKMDQAEYQAKIRDLQQAALTK  532
                +  +   +  RE I+E      +Q A      +D    + KI D+      +
Sbjct  570  GEVHMYADKITDSMREAIDETERRRAKQIAYNEANGIDPQPLRKKIADILDQVYRE  625


>sp|P67423|UVRB_MYCBO UvrABC system protein B OS=Mycobacterium 
bovis (strain ATCC BAA-935 / AF2122/97) OX=233413 GN=uvrB PE=3 
SV=2
Length=719

 Score = 86.0 bits (211),  Expect = 5e-16, Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 70/176 (40%), Gaps = 20/176 (11%)

Query  363  SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE  422
             +    R ++ T T++ A  L  +L +              +G       + +    + E
Sbjct  464  RADADQRVLVTTLTKKMAEDLTDYLLE--------------MGIRVRYLHSEVDTLRRVE  509

Query  423  VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQS  477
            ++++ + G  ++LV  ++  EGLD+P  ++V          L +  S++Q  GRA  + S
Sbjct  510  LLRQLRLGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSRSLIQTIGRAARNVS  569

Query  478  VYAFVATEGSRELKRELINEALETLMEQ-AVAAVQKMDQAEYQAKIRDLQQAALTK  532
                +  +   +  RE I+E      +Q A      +D    + KI D+      +
Sbjct  570  GEVHMYADKITDSMREAIDETERRRAKQIAYNEANGIDPQPLRKKIADILDQVYRE  625


>sp|A0PYA5|UVRB_CLONN UvrABC system protein B OS=Clostridium novyi 
(strain NT) OX=386415 GN=uvrB PE=3 SV=1
Length=657

 Score = 85.6 bits (210),  Expect = 5e-16, Method: Composition-based stats.
 Identities = 59/397 (15%), Positives = 125/397 (31%), Gaps = 27/397 (7%)

Query  170  PGTGGASKLDGAINHVLQLCANL-DTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
            P +  A+  D     + ++   L D   +++ ++   + Q   Q+      +        
Sbjct  244  PASHFATSKDKLEIAIKKIEEELEDRVKVLTAEDKLLEAQRVRQRTNFDIEMMREVGYCS  303

Query  229  FGDLLKKLMDQIHDHLEMPELSRKFGTQM---YEQQVVKLSEAAALAGLQEQRVYALHLR  285
              +   +++D          L   F        ++  V L +  A+ G    R   L   
Sbjct  304  GIENYSRVLDGRAPGTPPKTLMDYFPDDFLLFIDESHVTLPQVKAMYGGDRSRKNNLVEY  363

Query  286  RYNDALLIHDTVRAVDAL-AALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATH  344
             +       +     D     L              L     +          L      
Sbjct  364  GFRLPCAYDNRPLKFDEFEGKLNQTVFVSATPAQYELEHSTNVAEQIIRPTGLLDPEIIV  423

Query  345  GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI  404
             P   +++ L   ++         R ++ T T++ +  L  +L+               +
Sbjct  424  KPIKGQIDDLYASIKETI--DKGFRVLVTTLTKKMSEDLTDYLKS--------------M  467

Query  405  GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LL  459
            G       + +    + E+I+  + G  ++LV  ++  EGLDIP   +V          L
Sbjct  468  GIKTEYLHSSIDTIKRMEIIRDLRKGKFDVLVGINLLREGLDIPEVALVAILDADKEGFL  527

Query  460  TNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEY  518
             +E S+VQ  GR AR  +S     A   ++ + + +        ++        +     
Sbjct  528  RSETSLVQTIGRAARNSESKVIMYADNITKAMDKAISETNRRRKIQMEYNDKHGIVPRTV  587

Query  519  QAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQLL  555
               IRD+ Q  + +  A+     N  +    E  +L+
Sbjct  588  LKDIRDVIQTKVAEDEAEYKVNNNTDKLSKKEIEKLI  624


 Score = 33.6 bits (75),  Expect = 7.0, Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 7/64 (11%)

Query  9   EVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFR  68
           E I+   + + ++    TG+GKT          +E V     +VL +   L  Q   EFR
Sbjct  25  EGILKGEKFQTLLGV--TGSGKTFT----MANIIEKV-QKPTLVLAHNKTLAAQLTSEFR  77

Query  69  RMLD  72
               
Sbjct  78  EFFP  81


>sp|P57844|UVRB_PASMU UvrABC system protein B OS=Pasteurella multocida 
(strain Pm70) OX=272843 GN=uvrB PE=3 SV=1
Length=678

 Score = 85.6 bits (210),  Expect = 5e-16, Method: Composition-based stats.
 Identities = 41/221 (19%), Positives = 84/221 (38%), Gaps = 24/221 (11%)

Query  363  SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE  422
             +  + R ++ T T++ A  L  +L +        IR + L         + +   ++ E
Sbjct  447  RADQNERVLVTTLTKKMAEDLTDYLDEH------GIRVRYL--------HSDIDTVERVE  492

Query  423  VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQS  477
            +I+  + G  ++LV  ++  EGLDIP  ++V          L +E S++Q  GRA  +  
Sbjct  493  IIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLK  552

Query  478  VYAFVATEGSRELKRELINEALETLMEQ-AVAAVQKMDQAEYQAKIRDLQQAALTKRAAQ  536
              A +  +      ++ I E      +Q      + +       K+ +L           
Sbjct  553  GKAILYADRITNSMQKAITETNRRREKQMKYNEARGIVPQALNKKVGELLDIGQGANQKA  612

Query  537  AAQRENQRQQFPVEHVQLLCINCMVAVGHGSDLRKVEGTHH  577
             A R  ++   P      L +    A  +   ++K+E   +
Sbjct  613  KANRNAKKVAEP----TALYVVPQTAKEYQQQIKKLEQQMY  649


 Score = 34.4 bits (77),  Expect = 4.5, Method: Composition-based stats.
 Identities = 14/65 (22%), Positives = 22/65 (34%), Gaps = 7/65 (11%)

Query  8   WEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEF  67
            E +   L  + ++    TG+GKT   A V  +          +VL     L  Q   E 
Sbjct  30  IEGLENGLAHQTLLGV--TGSGKTFTIANVIAKL-----NRPAMVLAPNKTLAAQLYAEM  82

Query  68  RRMLD  72
           +    
Sbjct  83  KAFFP  87


>sp|Q6NHI3|UVRB_CORDI UvrABC system protein B OS=Corynebacterium 
diphtheriae (strain ATCC 700971 / NCTC 13129 / Biotype gravis) 
OX=257309 GN=uvrB PE=3 SV=1
Length=681

 Score = 85.6 bits (210),  Expect = 5e-16, Method: Composition-based stats.
 Identities = 36/182 (20%), Positives = 75/182 (41%), Gaps = 20/182 (11%)

Query  363  SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE  422
             ++   R ++ T T++ A  L  +L +        IR + L         + +    + E
Sbjct  447  RTTKDERVLVTTLTKKMAEDLTDYLLEN------GIRVRYL--------HSDIDTLQRVE  492

Query  423  VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQS  477
            ++++ + G  ++LV  ++  EGLD+P  ++V          L +  S++Q  GRA  + S
Sbjct  493  LLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTKSLIQTIGRAARNVS  552

Query  478  VYAFVATEGSRELKRELINEALETLMEQ-AVAAVQKMDQAEYQAKIRDLQQAALTKRAAQ  536
                +  +   +  +  I+E      +Q A      +D    + KI D+ +     +A  
Sbjct  553  GTVIMYADKITDSMQYAIDETERRREKQIAYNKEHGIDPQPLRKKIADILEQVQESKAES  612

Query  537  AA  538
             A
Sbjct  613  TA  614


 Score = 34.4 bits (77),  Expect = 4.7, Method: Composition-based stats.
 Identities = 12/47 (26%), Positives = 21/47 (45%), Gaps = 5/47 (11%)

Query  26  TGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLD  72
           TG GK+  AA++ ++          +V+     L  Q   E R++L 
Sbjct  47  TGTGKSATAAWLIEQQQRPT-----LVMAPNKTLAAQLANELRQLLP  88


>sp|Q74Z73|HAS1_EREGS ATP-dependent RNA helicase HAS1 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=HAS1 PE=3 SV=2
Length=504

 Score = 85.2 bits (209),  Expect = 5e-16, Method: Composition-based stats.
 Identities = 43/288 (15%), Positives = 96/288 (33%), Gaps = 19/288 (7%)

Query  253  FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHR  312
             G     Q+  KL++   L      R+   HL+     +  +     +D    + +    
Sbjct  146  IGGANRRQEAEKLAKGVNLLIATPGRLLD-HLQNTKGFVFKNLKALVIDEADRILEIGFE  204

Query  313  EHVTKT-QILCAERRLLALFDD----RKNELAHLATH------GPENPKLEMLEKILQRQ  361
            + + +  +IL  E R   LF      +  +LA ++          ++ K       L++ 
Sbjct  205  DEMKQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKETSTADGLEQG  264

Query  362  FSSSNSPR--GIIFT-RTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQR  418
            +   +S +   ++FT   +     ++++L     ++         I            Q+
Sbjct  265  YVVCDSDKRFLLLFTFLKKFQNKKIIVFLSSCNSVKYYAELLN-YIDLPVLELHGKQKQQ  323

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSV  478
             +     +F +    +LV T VA  GLDIP  + ++++    +    +   GR       
Sbjct  324  KRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTKG  383

Query  479  Y---AFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIR  523
                    T       R L    +     +  A      Q++ +  ++
Sbjct  384  KGKSLMFLTPHELGFLRYLKAAKVPLNEYEFPANKIANVQSQLEKLLK  431


 Score = 55.6 bits (132),  Expect = 1e-06, Method: Composition-based stats.
 Identities = 31/136 (23%), Positives = 51/136 (38%), Gaps = 11/136 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYV----AKRHLETVD--GAKVVVLVNRVHLV  60
            Q   I P + G++++    TG+GKT  A  +        L+     G  V+V+     L 
Sbjct  66   QARTIPPLMAGRDVLGAAKTGSGKTL-AFLLPAIEMLHSLKFKPRNGTGVIVITPTRELA  124

Query  61   TQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
             Q     R +++        + G    R     LA+  +LLI T   L   L + +    
Sbjct  125  LQIFGVARELMEFHSQTFGIVIGGANRRQEAEKLAKGVNLLIATPGRLLDHLQNTKGFVF  184

Query  120  VELTVFSLIVVDECHH  135
              L     +V+DE   
Sbjct  185  KNLKA---LVIDEADR  197


>sp|P0C2N7|DRS1_CHAGB ATP-dependent RNA helicase DRS1 OS=Chaetomium 
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 
6347 / NRRL 1970) OX=306901 GN=DRS1 PE=3 SV=1
Length=795

 Score = 86.0 bits (211),  Expect = 5e-16, Method: Composition-based stats.
 Identities = 31/136 (23%), Positives = 62/136 (46%), Gaps = 9/136 (7%)

Query  425  QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-V  482
              F+DG +N L+AT +A  GLDI   + V+ Y    +    V   GR ARA +S  A  +
Sbjct  559  SAFRDGKVNYLLATDLASRGLDIKGIDTVINYEAPQSLEIYVHRVGRTARAGRSGVAITL  618

Query  483  ATEGSRELKRELIN-------EALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAA  535
            A E  R++ +  +        + +  +++ A A   +    E   +I ++ Q    ++  
Sbjct  619  AAEPDRKVVKAAVRAGKAQGAKIISRVIDAADADKWQDQIDEMDDEIDEILQEEKEEKQL  678

Query  536  QAAQRENQRQQFPVEH  551
               + + ++ +  ++H
Sbjct  679  AQIEMQVKKGENLIKH  694


 Score = 58.3 bits (139),  Expect = 2e-07, Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 86/263 (33%), Gaps = 19/263 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHL----ETVDGAKVVVLVNRVHLVTQ  62
            Q + I  AL GK+++    TG+GKT A        L    + V   +VVVL     L  Q
Sbjct  303  QAKTIPIALMGKDVVGGAVTGSGKTAAFVVPILERLLYRPKKVPTTRVVVLTPTRELAIQ  362

Query  63   HGEE---FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
                        D ++ +    G +  +   G L    D++I T       + +      
Sbjct  363  CHSVATKLASHTDIKFCLAV--GGLSLKVQEGELRLRPDVVIATPGRFIDHMRNS---AS  417

Query  120  VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLD  179
              +    ++V+DE     +D   + +      L   R   L      +A+  +     + 
Sbjct  418  FAVETVEILVLDEADRMLEDGFADELNEILTTLPKSRQTML-----FSATMTSTVDKLIR  472

Query  180  GAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQ  239
              +N   ++  +      ++      +L+    +  K+        QDP       L+  
Sbjct  473  VGLNKPARIMVDSQKQTAVTLAQEFVRLRPG--REEKRMGYLGPYLQDPVHRTSHYLLQA  530

Query  240  IHDHLEMPELSRKFGTQMYEQQV  262
              D    P+  R  G   +    
Sbjct  531  EEDCSPDPDHLRLAGAFEHRAPW  553


>sp|A8GV86|UVRB_RICB8 UvrABC system protein B OS=Rickettsia bellii 
(strain OSU 85-389) OX=391896 GN=uvrB PE=3 SV=1
Length=661

 Score = 85.6 bits (210),  Expect = 5e-16, Method: Composition-based stats.
 Identities = 34/179 (19%), Positives = 71/179 (40%), Gaps = 20/179 (11%)

Query  370  GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD  429
             ++ T T++ A  L  +LQ+ +                 S   +++   ++ E+++  + 
Sbjct  448  VLVTTLTKKMAEDLTNYLQELK--------------YKTSYLHSNVHTLERIEILRDLRQ  493

Query  430  GTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGR-ARADQSVYAFVA  483
            GT+++LV  ++  EGLDIP C +V          L +E+S++Q  GR AR  +      A
Sbjct  494  GTIDILVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGRAARNSEGRVILYA  553

Query  484  TEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQREN  542
             + ++ + + +        ++Q       +        I  L +           Q  N
Sbjct  554  DKMTKSIDKAISETMRRRTIQQEHNEKYGIIPKTINRTIHALAELEKVDSKLDKKQTHN  612


>sp|Q8TDD1|DDX54_HUMAN ATP-dependent RNA helicase DDX54 OS=Homo 
sapiens OX=9606 GN=DDX54 PE=1 SV=2
Length=881

 Score = 86.0 bits (211),  Expect = 5e-16, Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 53/136 (39%), Gaps = 17/136 (13%)

Query  347  ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA  406
            E+ K  +L  +L       +  + ++F  T+  A  L   L  Q+               
Sbjct  320  EDTKAAVLLHLLHNVVRPQD--QTVVFVATKHHAEYLTELLTTQR--------------V  363

Query  407  GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV  466
              +   + +    ++  + KF  G  + L+ T +A  GLDIP  + V+ Y         +
Sbjct  364  SCAHIYSALDPTARKINLAKFTLGKCSTLIVTDLAARGLDIPLLDNVINYSFPAKGKLFL  423

Query  467  QARGR-ARADQSVYAF  481
               GR ARA +S  A+
Sbjct  424  HRVGRVARAGRSGTAY  439


 Score = 49.4 bits (116),  Expect = 1e-04, Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 47/127 (37%), Gaps = 12/127 (9%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVD---GAKVVVLVNRVHLVTQ---HGEEFR  68
            L+GK+++    TG+GKT          L+T     GA+ ++L     L  Q     +E  
Sbjct  131  LDGKDVVAMARTGSGKTACFLLPMFERLKTHSAQTGARALILSPTRELALQTLKFTKELG  190

Query  69   RMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLI  128
            +    +  +      M  +  F  L    D++I T   L         E  ++L     +
Sbjct  191  KFTGLKTALILGGDRMEDQ--FAALHENPDIIIATPGRLVHV----AVEMSLKLQSVEYV  244

Query  129  VVDECHH  135
            V DE   
Sbjct  245  VFDEADR  251


>sp|O60173|DBP7_SCHPO ATP-dependent RNA helicase dbp7 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=dbp7 
PE=3 SV=1
Length=709

 Score = 85.6 bits (210),  Expect = 5e-16, Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 75/206 (36%), Gaps = 25/206 (12%)

Query  299  AVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKIL  358
              D +  L D   ++ +     +  E      +     +L       P   +L  L  +L
Sbjct  348  MKDTVKRLSDSALKDALYLKSSIVEE--TNDGYSQAPEQLLQRYVVVPPKLRLVSLVALL  405

Query  359  QRQFSSSNSPRGIIFT-------------RTRQSAHSLLLWLQQQQGLQTVDIR---AQL  402
            +    S    + IIF              R   +A  +   ++++   +   I    A  
Sbjct  406  RSHVRSYK--KIIIFLSCSDSVDFHFEAFRCAINADEMEEAVKEKPDSEGDIISNAPALR  463

Query  403  LIGAGNSSQ-STHMTQRDQQEVIQKFQDGT---LNLLVATSVAEEGLDIPHCNVVVRYGL  458
            + G  N  +    ++Q+ +   +  F        ++L+ T VA  GLD+P+ ++VV+Y  
Sbjct  464  IDGKSNVYRLHGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARGLDLPNVDLVVQYDA  523

Query  459  LTNEISMVQARGR-ARADQSVYAFVA  483
              +    +   GR ARA  +  A + 
Sbjct  524  PFSTDDYLHRIGRTARAGHNGAAIMF  549


 Score = 47.9 bits (112),  Expect = 3e-04, Method: Composition-based stats.
 Identities = 21/119 (18%), Positives = 42/119 (35%), Gaps = 15/119 (13%)

Query  26   TGAGKTRAAAYVA--------KRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWT-  76
            TG+GKT A             K       G   V++     L  Q      ++ +   + 
Sbjct  187  TGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVANKLNNNPLSH  246

Query  77   ---VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDE  132
                  + G    ++    + +  ++LI T   L   L + E    ++++    +V+DE
Sbjct  247  WIVSCNVIGGEKKKSEKARIRKGVNILIGTPGRLADHLENTEA---LDVSQVRWVVLDE  302


>sp|Q5ASK8|SUB2_EMENI ATP-dependent RNA helicase sub2 OS=Emericella 
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 
194 / M139) OX=227321 GN=sub2 PE=3 SV=2
Length=434

 Score = 84.5 bits (207),  Expect = 5e-16, Method: Composition-based stats.
 Identities = 53/330 (16%), Positives = 108/330 (33%), Gaps = 49/330 (15%)

Query  200  PQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLM---DQIHDHLEMPELSRKFGTQ  256
            P  C   +  H+++   Q    + R      D+   +      I   +E+      F   
Sbjct  125  PGECSVLVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDIEVLSNKDTFPNI  184

Query  257  MYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQD-----FYH  311
            +      +L+       L  + V A  L   +  L   D  R V  +             
Sbjct  185  IVGTPG-RLNALVRDKKLSLRNVKAFVLDECDKMLDQIDMRRDVQEIFRATPTDKQVMMF  243

Query  312  REHVTKTQILCAERRLLALFDDRKNELAHLATHG--------PENPKLEMLEKILQRQFS  363
               +++      ++ +    +   ++   L  HG         E  K   L ++L     
Sbjct  244  SATLSQDVRPICKKFMRNPLEVYVDDDTKLTLHGLQQYYIKLSEAEKNRKLNELLDSL--  301

Query  364  SSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEV  423
                 + IIF ++   A+ L   L++     ++ + +                       
Sbjct  302  --EFNQVIIFVKSTIRANELDKLLREC-NFPSIAVHSGRY--------------------  338

Query  424  IQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQS---VYA  480
             ++F++    + VAT V   G+DI   N+ + Y L  +  S +   GRA    +     +
Sbjct  339  -KEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLSIS  397

Query  481  FVATEGSRELKRELINE---ALETLMEQAV  507
            FV+T    ++ +++      AL    E+ V
Sbjct  398  FVSTPEDEQVLKDIEKRFEVALPEYPEEGV  427


 Score = 49.0 bits (115),  Expect = 1e-04, Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 47/135 (35%), Gaps = 14/135 (10%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG-AKVVVLVNRVHLVTQ---  62
            Q   I  A+   +++    +G GKT          LE V G   V+V+ +   L  Q   
Sbjct  86   QQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQIKN  145

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHD----LLICTAELLQMALTSPEEEE  118
                F + L    T     G   P      +    D    +++ T   L  AL   ++  
Sbjct  146  EYARFSKYLPDVKTAVFYGG--TPIQKDIEVLSNKDTFPNIIVGTPGRL-NALVRDKK--  200

Query  119  HVELTVFSLIVVDEC  133
             + L      V+DEC
Sbjct  201  -LSLRNVKAFVLDEC  214


>sp|Q81E85|CSHC_BACCR DEAD-box ATP-dependent RNA helicase CshC 
OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 
/ JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711) 
OX=226900 GN=cshC PE=2 SV=1
Length=389

 Score = 84.1 bits (206),  Expect = 5e-16, Method: Composition-based stats.
 Identities = 46/317 (15%), Positives = 96/317 (30%), Gaps = 22/317 (7%)

Query  190  ANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPEL  249
             ++              L     +   +          P  +L+ ++ +++       E+
Sbjct  36   QDVIAESPTGTGKTLAYLLPLLHKINPEVKQPQVVVLAPTRELVMQIHEEVQKFTAGTEI  95

Query  250  S--RKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQ  307
            S     G    ++QV KL +   +      R+  L L R     +        D    + 
Sbjct  96   SGASLIGGADIKRQVEKLKKHPRVIVGSPGRI--LELIRMKKLKMHEVKTIVFDEFDQIV  153

Query  308  DFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG-PENPKLEMLEKILQRQFSSSN  366
                   V          R L  F     + A  A       P+L  + +   +      
Sbjct  154  KQKMMGAVQDVIKSTMRDRQLVFFSATMTKAAEDAARDLAVEPQLVRVTRAESKSLVEHT  213

Query  367  SPRGIIFTRTRQSAHSLLLWLQQ---------QQGLQTVDIRAQL-LIGAGNSSQSTHMT  416
                II    R+    +   +               +  +I  +L       ++     +
Sbjct  214  ---YII-CERREKNDYVRRIMHMGDVKAVAFLNDPFRLDEITEKLKFRKMKAAALHAEAS  269

Query  417  QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARAD  475
            +++++  ++ F+ G L +L+AT +A  G+DI     V+   L       +   GR  R  
Sbjct  270  KQEREATMRAFRGGKLEILLATDIAARGIDIDDLTHVIHLELPDTVDQYIHRSGRTGRMG  329

Query  476  QSVYA--FVATEGSREL  490
            +       V  +  R+L
Sbjct  330  KEGTVVSLVTPQEERKL  346


 Score = 64.0 bits (154),  Expect = 2e-09, Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 6/128 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLE-TVDGAKVVVLVNRVHLVTQHGE  65
            Q + I   LEG+++I   PTG GKT A        +   V   +VVVL     LV Q  E
Sbjct  25   QKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKINPEVKQPQVVVLAPTRELVMQIHE  84

Query  66   EFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
            E ++   G   +  +L G    +     L +   +++ +   +   +   +    +++  
Sbjct  85   EVQKFTAGTEISGASLIGGADIKRQVEKLKKHPRVIVGSPGRILELIRMKK----LKMHE  140

Query  125  FSLIVVDE  132
               IV DE
Sbjct  141  VKTIVFDE  148


>sp|Q8TL39|HELS_METAC ATP-dependent DNA helicase Hel308 OS=Methanosarcina 
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 
12185 / C2A) OX=188937 GN=hel308 PE=3 SV=1
Length=730

 Score = 85.6 bits (210),  Expect = 5e-16, Method: Composition-based stats.
 Identities = 42/170 (25%), Positives = 72/170 (42%), Gaps = 12/170 (7%)

Query  7    QWEVIMPAL-EGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q E +   L EGKN++  +PT +GKT  A     + +  + G K + +V    L ++   
Sbjct  28   QAEAVEKGLLEGKNLLAAIPTASGKTLLAELAMLKSV--LAGGKALYIVPLRALASEKFR  85

Query  66   EFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF  125
             F+   +    V   +GD   R         +D+++ T+E     L      E   +   
Sbjct  86   RFQDFSELGIRVGISTGDYDRR---DEGLGINDIIVATSEKTDSLL----RNETAWMQEI  138

Query  126  SLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGA  175
            S++VVDE H    D+       +    KL++  P  Q+L L+A+ G    
Sbjct  139  SVVVVDEVHLI--DSADRGPTLEVTLAKLRKMNPFCQILALSATVGNADE  186


 Score = 37.5 bits (85),  Expect = 0.52, Method: Composition-based stats.
 Identities = 40/237 (17%), Positives = 77/237 (32%), Gaps = 40/237 (17%)

Query  262  VVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQIL  321
            + K++    +  L      A  L  + DA L+    R  D +  +  F+      K    
Sbjct  165  LRKMNPFCQILALSATVGNADELAAWLDAELVLSEWRPTDLMEGV--FFDGTFFCK----  218

Query  322  CAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIF-------T  374
                       D++  +         N  L+ L +  Q     S+    + F        
Sbjct  219  -----------DKEKLIEQPTKDEAINLVLDTLREGGQCLVFESSRKNCMGFAKKATSAV  267

Query  375  RTRQSAHS------LLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            +   SA        +   + +     T  + A   + AG +     +T   ++ V   F+
Sbjct  268  KKTLSAEDKEKLAGIADEILENSETDTASVLASC-VRAGTAFHHAGLTSPLRELVETGFR  326

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVV----RYGL-----LTNEISMVQARGRARADQ  476
            +G + L+ +T     GL++P   V++    RY           +   Q  GRA   +
Sbjct  327  EGYVKLISSTPTLAAGLNLPARRVIIRSYRRYSSDSGMQPIPVLEYKQMAGRAGRPR  383


>sp|Q93Y39|RH13_ARATH DEAD-box ATP-dependent RNA helicase 13 OS=Arabidopsis 
thaliana OX=3702 GN=RH13 PE=2 SV=3
Length=826

 Score = 85.6 bits (210),  Expect = 5e-16, Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 78/218 (36%), Gaps = 27/218 (12%)

Query  337  ELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTV  396
            ++        E  K   L  IL          R I+F  +      +   L+        
Sbjct  476  KIEESFIKCEEKEKDAYLYYILSVH----GQGRTIVFCTSVTDLRHISGLLK--------  523

Query  397  DIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY  456
                  ++G    +  + M QR + + I +F+     +L+AT +   G+DI +   ++ Y
Sbjct  524  ------ILGLDVCTLFSEMKQRARLKSIDRFRASENGILIATDLVARGIDIKNVRTIIHY  577

Query  457  GLLTNEISMVQARGR-AR--ADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM  513
             L  +    V   GR AR  AD    A +    + +      + ++E++       +  +
Sbjct  578  KLPHSAEVYVHRCGRTARAFADGCSIALIEPNETSKFYTLCKSFSMESV------KIFPL  631

Query  514  DQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEH  551
            D +   A  + L  A       +   REN  + +  +H
Sbjct  632  DNSYMPAVRKRLYLARQIYEIERKGSRENADRTWLKKH  669


 Score = 51.0 bits (120),  Expect = 3e-05, Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 48/145 (33%), Gaps = 23/145 (16%)

Query  13   PALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA---------------------KVV  51
             A +GK++I    TG+GKT A      + L                           + +
Sbjct  224  AAYQGKDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRAL  283

Query  52   VLVNRVHLVTQHGEEFRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMA  110
            ++     L  Q  E       +    V  + G M        L    ++++ T   L   
Sbjct  284  IITPTRELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPEIVVATPGRLWEL  343

Query  111  LTSPEEEEHVELTVFSLIVVDECHH  135
            +++ E+   VEL   S  V+DE   
Sbjct  344  MSAGEKH-LVELHSLSFFVLDEADR  367


>sp|Q0UMB9|DBP4_PHANO ATP-dependent RNA helicase DBP4 OS=Phaeosphaeria 
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) 
OX=321614 GN=DBP4 PE=3 SV=1
Length=803

 Score = 85.6 bits (210),  Expect = 6e-16, Method: Composition-based stats.
 Identities = 43/258 (17%), Positives = 85/258 (33%), Gaps = 26/258 (10%)

Query  265  LSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAE  324
            + +   L   +  R+  +  +R  DA +I    +    L        +        L   
Sbjct  195  VDDLKMLVLDEADRILDMGFQRDVDA-IIDYLPKERQTLLFSATQSKKVSDLARLSLQDP  253

Query  325  RRLLALFDDRKNELAHLATH---GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAH  381
              +    +D+      L  +    P   KL+ L   +Q    +S   + ++F  + ++  
Sbjct  254  EYVSVHAEDKSATPKSLQQNYIICPLEEKLDTLWSFIQ----ASKKSKILVFFSSAKAVR  309

Query  382  SLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVA  441
             +    +  Q             G           Q  + +   KF     + L AT VA
Sbjct  310  FVYESFRHMQP------------GIPLLHIHGRQKQGARLDTTAKFSSAKNSCLFATDVA  357

Query  442  EEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR--ADQSVYAFVATEGSRELKRELINEA  498
              GLD P  + V++     +  + +   GR AR   +     F+A      + + L  + 
Sbjct  358  ARGLDFPAVDFVIQVDCPDDVDTYIHRVGRTARYNREGRGVLFLAPSEEEGMLKRLEAKK  417

Query  499  LETLMEQAVAAVQKMDQA  516
            +     +A+   QK  Q+
Sbjct  418  VPV---EAINVRQKKRQS  432


 Score = 51.7 bits (122),  Expect = 2e-05, Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 48/138 (35%), Gaps = 14/138 (10%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT--RAAAYVAKRHLETVDGAK-----VVVLVNRVHL  59
            Q + +  AL+G +I+    TG+GKT       V +                ++L     L
Sbjct  76   QRKAVPLALKGHDILGAAKTGSGKTLSFI-IPVLENLYRLQHVGADAGLGALILSPTREL  134

Query  60   VTQHGEEFRRMLDGR--WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE  117
              Q  +   ++      +    L G     +    L R + +L+ T   +   L+   + 
Sbjct  135  AIQIFDVLCKIGKHGHMFAAGLLIGGKSLESERQALPRMN-ILVATPGRMLQHLS---QT  190

Query  118  EHVELTVFSLIVVDECHH  135
                +    ++V+DE   
Sbjct  191  AAFLVDDLKMLVLDEADR  208


>sp|Q4WMS3|MAK5_ASPFU ATP-dependent RNA helicase mak5 OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 
/ Af293) OX=330879 GN=mak5 PE=3 SV=2
Length=777

 Score = 85.6 bits (210),  Expect = 6e-16, Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 53/139 (38%), Gaps = 22/139 (16%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K   L  +L          R ++FT +  +   L   LQ  Q                  
Sbjct  493  KDLFLYTLLLYH----PKHRTLVFTNSISAVRRLTKLLQTLQLPAL--------------  534

Query  410  SQSTHMTQRDQQEVIQKFQDGTLN---LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV  466
            +  + M Q+ +   +++F   + +   +L+AT VA  GLDI   ++V+ Y       + V
Sbjct  535  ALHSSMAQKARLRSVERFSSPSSDPSTILIATDVAARGLDIKGIDLVIHYHAPRTADTYV  594

Query  467  QARGR-ARADQSVYAFVAT  484
               GR ARA  S  + +  
Sbjct  595  HRSGRTARAGASGKSVIIC  613


 Score = 47.5 bits (111),  Expect = 4e-04, Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 50/141 (35%), Gaps = 22/141 (16%)

Query  15   LEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGA---------------KVVVLVNRVH  58
            LEG ++I    TG+GKT A    + + +LE                      ++L     
Sbjct  236  LEGHDVIGKASTGSGKTLAFGIPILEHYLEKKRDDISAQKEQMSEKDSTPIALILSPTRE  295

Query  59   LVTQHGEEFRRMLDGRWTV----TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP  114
            L  Q  +    ++     V      L+G +  +     L    D++I T   +   L++ 
Sbjct  296  LAHQLSKHIGELIAQAPGVNARIALLTGGLSVQKQ-QRLLSGADIVIGTPGRVWEILSTG  354

Query  115  EEEEHVELTVFSLIVVDECHH  135
            +     ++     +VVDE   
Sbjct  355  QGL-IRKMQQIKFLVVDEADR  374


>sp|Q8SR01|DBP4_ENCCU ATP-dependent RNA helicase DBP4 OS=Encephalitozoon 
cuniculi (strain GB-M1) OX=284813 GN=DBP4 PE=3 SV=2
Length=449

 Score = 84.5 bits (207),  Expect = 6e-16, Method: Composition-based stats.
 Identities = 30/144 (21%), Positives = 56/144 (39%), Gaps = 19/144 (13%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K+  L   +     S+   +GI+F  T +               + + +R ++       
Sbjct  228  KINYLHTFI----GSNPEVKGIVFFSTCKEVK------FHCLLFERLKLRNRIF------  271

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
              S  M+Q+ + +V ++F      +L  T +   GLD P  +VV++Y    N  + V   
Sbjct  272  CLSGGMSQKQRIDVFKRFVKEKNGILFCTDLGSRGLDFPKVDVVIQYDCPCNVETYVHRV  331

Query  470  GR-ARAD--QSVYAFVATEGSREL  490
            GR AR       Y ++     + L
Sbjct  332  GRTARNSERGESYVYLVHGEEKLL  355


 Score = 54.8 bits (130),  Expect = 1e-06, Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 76/196 (39%), Gaps = 19/196 (10%)

Query  1    MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAY------VAKRHLETVDGAKVVVLV  54
            + ++  Q +VI  ALEG +II    TG GKT  A        +        DG   +V+ 
Sbjct  22   VSMKEVQQKVIPMALEGHDIIGSSQTGTGKTL-AFLVPTLQRLVSLGWGGGDGLGCLVIT  80

Query  55   NRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHD--LLICTAELLQMALT  112
                L  Q  +   R+   ++TV +    MG       L + +   +L+CT   L   L 
Sbjct  81   PTRELALQIFDVLSRI--AKYTVLSTGLIMGGLEAEDELLKVNQMNILVCTPGRLLQHLQ  138

Query  113  SPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGT  172
               E  ++      ++++DE      D +  +   + LE  L+      Q L  +A+P  
Sbjct  139  ---ENPYLSTANVQILILDEA-----DKMIEMGFKEVLEDILEYIPQKKQTLLFSATPKA  190

Query  173  GGASKLDGAINHVLQL  188
              A  L      ++ +
Sbjct  191  STARILKLEDPRIISI  206


>sp|Q750Q4|MS116_EREGS ATP-dependent RNA helicase MSS116, mitochondrial 
OS=Eremothecium gossypii (strain ATCC 10895 / CBS 
109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=MSS116 PE=3 SV=1
Length=658

 Score = 85.2 bits (209),  Expect = 6e-16, Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 50/130 (38%), Gaps = 15/130 (12%)

Query  358  LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ  417
            ++ + S++   + I+F  T  +       LQ Q              G         ++Q
Sbjct  380  IREEASANPKLKAIVFMPTIVAVEYWGELLQSQ------------CRGTPVLLFHGGLSQ  427

Query  418  RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR---GRARA  474
              +   +++F+     +LV T VA  G+D+     V + G+ T+  + +      GRA  
Sbjct  428  GRRNSTMKRFRAMDSGILVCTDVAARGMDVSDVQHVYQVGVPTSPDNYIHRIGRTGRAGR  487

Query  475  DQSVYAFVAT  484
              S   F+A 
Sbjct  488  KGSSTIFLAE  497


 Score = 50.2 bits (118),  Expect = 5e-05, Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 48/138 (35%), Gaps = 15/138 (11%)

Query  7    QWEVIMPALEGKNIIIW-LPTGAGKTRAAAY--VAKRHLETVDGA--KVVVLVNRVHLVT  61
            Q + + P L+ ++ ++    TG GKT  A    + +R LE       K VV+     L  
Sbjct  153  QQKTLKPILQTEHDVVARAKTGTGKTL-AFLMPLFQRLLEGPPSENVKAVVIAPTRDLAA  211

Query  62   QHGEEFRRMLDGRWT------VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE  115
            Q   E   M +          V  + G            R  ++++ T   L   L +  
Sbjct  212  QIFNEINEMRNANRKLRRFNAVVMMGGSSRTETFRSLERRRPNIVVATPGRLIDMLEACG  271

Query  116  EEEHVELTVFSLIVVDEC  133
             +   E+    L   DE 
Sbjct  272  PKYFTEVDFKVL---DEA  286


>sp|Q9LIH9|RH51_ARATH DEAD-box ATP-dependent RNA helicase 51 OS=Arabidopsis 
thaliana OX=3702 GN=RH51 PE=2 SV=1
Length=568

 Score = 84.8 bits (208),  Expect = 7e-16, Method: Composition-based stats.
 Identities = 37/251 (15%), Positives = 81/251 (32%), Gaps = 40/251 (16%)

Query  253  FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHR  312
             G      +  +++  + L      R+   HL+     +  H     +D    + +    
Sbjct  196  IGGNNRRSEAQRIASGSNLVIATPGRLLD-HLQNTKAFIYKHLKCLVIDEADRILEENFE  254

Query  313  EHVTKTQILCAERRLLALFD----DRKNELAHLATHGPENPKLEMLEK------------  356
            E + K   +  + R  ALF      +  +LA ++   P +  ++   +            
Sbjct  255  EDMNKILKILPKTRQTALFSATQTSKVKDLARVSLTSPVHVDVDDGRRKVTNEGLEQGYC  314

Query  357  ---------ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG  407
                     +L      + + + ++F  T +S           + ++  D+    + G  
Sbjct  315  VVPSKQRLILLISFLKKNLNKKIMVFFSTCKSVQ------FHTEIMKISDVDVSDIHG--  366

Query  408  NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
                   M Q  + +    F      +L+ T VA  GLDIP  + +++Y         + 
Sbjct  367  ------GMDQNRRTKTFFDFMKAKKGILLCTDVAARGLDIPSVDWIIQYDPPDKPTEYIH  420

Query  468  ARGRARADQSV  478
              GR    +  
Sbjct  421  RVGRTARGEGA  431


 Score = 61.7 bits (148),  Expect = 1e-08, Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 53/135 (39%), Gaps = 9/135 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA----AA-YVAKRHLETVDGAKVVVLVNRVHLVT  61
            Q   I P LEGK+++    TG+GKT A    A   + K      +G  V+V+     L  
Sbjct  116  QAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTGVIVICPTRELAI  175

Query  62   QHGEEFRRMLDGRWT-VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
            Q       +L      V+ + G    R+    +A   +L+I T   L   L + +   + 
Sbjct  176  QTKNVAEELLKHHSQTVSMVIGGNNRRSEAQRIASGSNLVIATPGRLLDHLQNTKAFIY-  234

Query  121  ELTVFSLIVVDECHH  135
                   +V+DE   
Sbjct  235  --KHLKCLVIDEADR  247


>sp|B0SLS0|UVRB_LEPBP UvrABC system protein B OS=Leptospira biflexa 
serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) OX=456481 
GN=uvrB PE=3 SV=1
Length=664

 Score = 85.2 bits (209),  Expect = 7e-16, Method: Composition-based stats.
 Identities = 37/224 (17%), Positives = 91/224 (41%), Gaps = 22/224 (10%)

Query  337  ELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTV  396
             L  +    P   ++E L   ++     +   R +I T T++ +  L  + ++       
Sbjct  416  LLDPVVEVRPTTNQIEDLLNEIR--LRINQKERVLITTLTKKMSEDLTDYYKE-------  466

Query  397  DIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY  456
                   +G   +   + +   ++ E+I+  + G  + +V  ++  EGLDIP  ++V   
Sbjct  467  -------VGLKIAYLHSEIDTIERTEIIRDLRKGVYDCIVGINLLREGLDIPEVSLVAIL  519

Query  457  G-----LLTNEISMVQARGRARADQSVYAFVATEG-SRELKRELINEALETLMEQAVAAV  510
                   L N  S+VQ  GRA  + +  A +  +  +  +K+ +       L+++A    
Sbjct  520  DADKEGFLRNYKSLVQTIGRAARNVNGKAILYADRMTDSIKKAMSETERRRLIQEAHNEK  579

Query  511  QKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQL  554
              +     Q +I D+    + +  ++    ++  ++F ++  + 
Sbjct  580  MGITPQTIQKEIHDILPREMAEEDSKEEALKDLEKEFTLKKYKT  623


>sp|B0SDE2|UVRB_LEPBA UvrABC system protein B OS=Leptospira biflexa 
serovar Patoc (strain Patoc 1 / Ames) OX=355278 GN=uvrB 
PE=3 SV=1
Length=664

 Score = 85.2 bits (209),  Expect = 7e-16, Method: Composition-based stats.
 Identities = 37/224 (17%), Positives = 91/224 (41%), Gaps = 22/224 (10%)

Query  337  ELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTV  396
             L  +    P   ++E L   ++     +   R +I T T++ +  L  + ++       
Sbjct  416  LLDPVVEVRPTTNQIEDLLNEIR--LRINQKERVLITTLTKKMSEDLTDYYKE-------  466

Query  397  DIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY  456
                   +G   +   + +   ++ E+I+  + G  + +V  ++  EGLDIP  ++V   
Sbjct  467  -------VGLKIAYLHSEIDTIERTEIIRDLRKGVYDCIVGINLLREGLDIPEVSLVAIL  519

Query  457  G-----LLTNEISMVQARGRARADQSVYAFVATEG-SRELKRELINEALETLMEQAVAAV  510
                   L N  S+VQ  GRA  + +  A +  +  +  +K+ +       L+++A    
Sbjct  520  DADKEGFLRNYKSLVQTIGRAARNVNGKAILYADRMTDSIKKAMSETERRRLIQEAHNEK  579

Query  511  QKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQL  554
              +     Q +I D+    + +  ++    ++  ++F ++  + 
Sbjct  580  MGITPQTIQKEIHDILPREMAEEDSKEEALKDLEKEFTLKKYKT  623


>sp|Q4P5U4|DBP4_USTMA ATP-dependent RNA helicase DBP4 OS=Ustilago 
maydis (strain 521 / FGSC 9021) OX=237631 GN=DBP4 PE=3 SV=2
Length=916

 Score = 85.6 bits (210),  Expect = 7e-16, Method: Composition-based stats.
 Identities = 46/302 (15%), Positives = 99/302 (33%), Gaps = 36/302 (12%)

Query  286  RYNDALLIHDTVRAVD-----ALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH  340
                 L++ +  R +D      L A+ +   R   T        +R+  L      +  +
Sbjct  203  SNVQVLVLDEADRILDMGFSRTLNAIVENLPRNRQTMLFSATQTKRVKDLARLSLQDPEY  262

Query  341  LATHGPENP--------------KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLW  386
            +A   PEN               +LE    +L     +    + ++F  + +    +   
Sbjct  263  VAVREPENEGCTPRGLEQHYMLVELEKKLDLLFSFIRTHTKCKALVFMSSCRQVQFVHET  322

Query  387  LQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLD  446
              + +             G    +      Q  + ++  +F      LL AT +A  GLD
Sbjct  323  FCKLRP------------GVSLMALHGKQKQAKRLQIFTQFTKTQHALLFATDIAARGLD  370

Query  447  IPHCNVVVRYGLLTNEISMVQARGR-AR--ADQSVYAFVATEGSRELKRELINEALET-L  502
             P  + V++  +  +  + +   GR AR  A  +   FV     + +   L  + +    
Sbjct  371  FPAVDWVIQLDVPEDVDTYIHRVGRTARYTAKGNSLLFVLPSEEKGILEALATKNIAIGR  430

Query  503  MEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQ-RQQFPVEHVQLLCINCMV  561
            ++   +  Q +         ++ Q   L ++A  +  R    ++   +  V  L +    
Sbjct  431  IKPKESKTQSIQNQLQAFAFQEPQIKHLAQKAFVSYVRSIHLQKNKEIFDVTALALEPFA  490

Query  562  AV  563
            A 
Sbjct  491  AA  492


 Score = 53.3 bits (126),  Expect = 6e-06, Method: Composition-based stats.
 Identities = 22/139 (16%), Positives = 47/139 (34%), Gaps = 8/139 (6%)

Query  2    ELRSYQWEVIMPALEGKNIIIWLPTGAGKT---RAAAYVAKRHLETVDGA--KVVVLVNR  56
            ++   Q + +  +L+GK+++    TG+GKT              +         +V+   
Sbjct  80   DMTDIQAKSLSLSLKGKDVLGAARTGSGKTLAFLIPVLEILYRRKWGPSDGLGALVISPT  139

Query  57   VHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE  116
              L  Q  E  R++         L                 ++LI T   L   +   ++
Sbjct  140  RELAIQIFEVLRKIGSYHTFSAGLVIGGKDVKQEKDRLSRINILIATPGRLLQHM---DQ  196

Query  117  EEHVELTVFSLIVVDECHH  135
                + +   ++V+DE   
Sbjct  197  TLGFDTSNVQVLVLDEADR  215


>sp|Q8W4E1|RH47_ARATH DEAD-box ATP-dependent RNA helicase 47, 
mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RH47 PE=1 SV=2
Length=551

 Score = 84.8 bits (208),  Expect = 7e-16, Method: Composition-based stats.
 Identities = 25/121 (21%), Positives = 56/121 (46%), Gaps = 2/121 (2%)

Query  380  AHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATS  439
            A S++ ++   + L+ V  + +   G  ++     + +  +  V++KF++G + +LV   
Sbjct  407  AQSVIAFMNHSRQLKDVVYKLEAR-GMNSAEMHGDLGKLGRSTVLKKFKNGEIKVLVTNE  465

Query  440  VAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEA  498
            ++  GLD+  C++VV   L T+ +      GR  R  +        E S+    + + + 
Sbjct  466  LSARGLDVAECDLVVNLELPTDAVHYAHRAGRTGRLGRKGTVVTVCEESQVFIVKKMEKQ  525

Query  499  L  499
            L
Sbjct  526  L  526


 Score = 36.3 bits (82),  Expect = 0.97, Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 46/143 (32%), Gaps = 21/143 (15%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAK------------RHLETVDGAKV--VV  52
            Q   +   ++G + +I   TG+GKT A                   H E     ++  ++
Sbjct  137  QSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMI  196

Query  53   LVNRVHLVTQHGEEFRRMLDG--RWTVTTLSGDMGPRAGFGHLARCH-DLLICTAELLQM  109
            +     L  Q   E  ++L    R  V  L G          L +    +++ T   +  
Sbjct  197  VAPSRELGMQIVREVEKLLGPVHRRMVQQLVGGANRMRQEEALKKNKPAIVVGTPGRIAE  256

Query  110  ALTSPEEEEHVELTVFSLIVVDE  132
                 +   H        +V+DE
Sbjct  257  ISKGGKLHTHGCR----FLVLDE  275


>sp|P75172|Y623_MYCPN Probable ATP-dependent RNA helicase MG425 
homolog OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129 
/ Subtype 1) OX=272634 GN=MPN_623 PE=3 SV=1
Length=450

 Score = 84.1 bits (206),  Expect = 8e-16, Method: Composition-based stats.
 Identities = 51/341 (15%), Positives = 115/341 (34%), Gaps = 53/341 (16%)

Query  205  PQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQV  262
            P ++   ++P K           P  +L +++     +  +    ++    G     QQ+
Sbjct  60   PVIETLLKKPSK--GTTQTLVVAPTRELAEQIKTTFINFAKHTHLKVVSLIGGIPIWQQL  117

Query  263  VKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTV--------------RAVDALAALQD  308
             +L     +      RV  L  R       +   +              +  D L+ ++ 
Sbjct  118  KQLENQPEIVVGTMGRVMDLLERGVIKFEHLEHLIIDEVDLMLDRGFKRKLFDLLSRIEK  177

Query  309  F----YHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKL----------EML  354
            F     +     +  I  A++           EL       P+N KL             
Sbjct  178  FEQIAVYSASYNEETIETAKQITKNGIFLAAPELKQ-NAPEPDN-KLIDQFVCYLFSNRK  235

Query  355  EKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH  414
            ++ L    S + +   I+F  T++    L ++L++       D++   L G         
Sbjct  236  KQALYSLVSQTRAKSIIVFCDTKKLVDELCIFLRKN------DVKTYPLHG--------D  281

Query  415  MTQRDQQEVIQKFQDGTLNL-LVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-A  472
              Q  ++  ++ F + T  + LV T +   G+ +   ++VV Y    N  + +   GR  
Sbjct  282  KAQFIRERNLKLFANTTAPIVLVTTDLIGRGIHVEGVDMVVNYSACVNFETYLHRMGRTG  341

Query  473  RADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM  513
            R +               +++   + LE + ++ ++ ++ M
Sbjct  342  RNNHKGSCITFC---TSHEKQAFLKLLEQVNDKRISPLRPM  379


 Score = 53.3 bits (126),  Expect = 5e-06, Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 47/130 (36%), Gaps = 8/130 (6%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGA--KVVVLVNRVHLVTQH  63
            Q   I   L+ +N+I+  PTG GKT      V +  L+       + +V+     L  Q 
Sbjct  30   QQLAIPQFLQHQNLIVHSPTGTGKTAVFGIPVIETLLKKPSKGTTQTLVVAPTRELAEQI  89

Query  64   GEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
               F          V +L G +        L    ++++ T   +   L    E   ++ 
Sbjct  90   KTTFINFAKHTHLKVVSLIGGIPIWQQLKQLENQPEIVVGTMGRVMDLL----ERGVIKF  145

Query  123  TVFSLIVVDE  132
                 +++DE
Sbjct  146  EHLEHLIIDE  155


>sp|Q72XV1|UVRB_BACC1 UvrABC system protein B OS=Bacillus cereus 
(strain ATCC 10987 / NRS 248) OX=222523 GN=uvrB PE=3 SV=1
Length=658

 Score = 84.8 bits (208),  Expect = 8e-16, Method: Composition-based stats.
 Identities = 35/199 (18%), Positives = 79/199 (40%), Gaps = 20/199 (10%)

Query  365  SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI  424
            + + R +I T T++ +  L  +L+               +G   +   + +   ++ E+I
Sbjct  443  AKNERVLITTLTKKMSEDLTDYLKD--------------VGIKVNYLHSEVKTLERIEII  488

Query  425  QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGR-ARADQSV  478
            +  + G  ++LV  ++  EGLDIP  ++V          L +E S++Q  GR AR +   
Sbjct  489  RDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNENGR  548

Query  479  YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA  538
                A   +R ++  +        +++A      +     Q  +RD+ +A       +  
Sbjct  549  VIMYADRITRSMEIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAEETETY  608

Query  539  QRENQRQQFPVEHVQLLCI  557
            +    ++    E  + +  
Sbjct  609  EATPAKKMTKKEREKTIAK  627


>sp|Q3SIK7|UVRB_THIDA UvrABC system protein B OS=Thiobacillus 
denitrificans (strain ATCC 25259) OX=292415 GN=uvrB PE=3 SV=1
Length=675

 Score = 84.8 bits (208),  Expect = 8e-16, Method: Composition-based stats.
 Identities = 34/183 (19%), Positives = 68/183 (37%), Gaps = 20/183 (11%)

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
              R ++ T T++ A  L  +L +               G       + +   ++ E+I+ 
Sbjct  450  GERVLVTTLTKRMAEDLTDYLAE--------------HGVKVRYLHSDIDTVERVEIIRD  495

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGR-ARADQSVYA  480
             + G  ++LV  ++  EGLDIP  ++V          L +E S++Q  GR AR       
Sbjct  496  LRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARHLNGTAI  555

Query  481  FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR  540
              A   +  ++R +         + A      +       +I+D+        A++   +
Sbjct  556  LYADRITDSMQRAIGETERRRAKQIAFNTEHGITPRGVVKRIKDIIDGVYDADASRQELK  615

Query  541  ENQ  543
              Q
Sbjct  616  AAQ  618


 Score = 34.0 bits (76),  Expect = 6.2, Method: Composition-based stats.
 Identities = 16/65 (25%), Positives = 23/65 (35%), Gaps = 7/65 (11%)

Query  8   WEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEF  67
            E I   L  + ++    TG+GKT   A V  R      G   +++     L  Q   E 
Sbjct  30  IEGIDDGLSYQTLLGV--TGSGKTYTMANVIAR-----AGRPALIMAPNKTLAAQLYAEM  82

Query  68  RRMLD  72
           R    
Sbjct  83  REFFP  87


>sp|A3PFD7|UVRB_PROM0 UvrABC system protein B OS=Prochlorococcus 
marinus (strain MIT 9301) OX=167546 GN=uvrB PE=3 SV=1
Length=679

 Score = 84.8 bits (208),  Expect = 8e-16, Method: Composition-based stats.
 Identities = 90/583 (15%), Positives = 179/583 (31%), Gaps = 125/583 (21%)

Query  7    QWEVIMPALEGKNI-----IIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVT  61
            Q E I   ++G N       +   TG GKT   A V ++      G   +VL +   L  
Sbjct  16   QPEAIKKLVKGVNTGKEFQTLLGATGTGKTFTIANVIQQT-----GRPALVLAHNKTLAA  70

Query  62   QHGEEFRRMLDGRWTVTTLSG---------------------------DMGPRAGFGHLA  94
            Q   E R           +S                            DM   +    L 
Sbjct  71   QLCNELREFFPKNAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDMLRHSATRSLF  130

Query  95   RCHDLLICTAELLQMALTSPEEE-----EHVELTVFSLIVVDECHHTHKDTVYNVIMSQY  149
               D+++  +      L  P E      +       +L          +  + +++ +QY
Sbjct  131  ERKDVIVVASISCIYGLGIPSEYLKAAVKFEVGKSINL----------RSYLRSLVENQY  180

Query  150  LELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQ--NCCPQL  207
                ++  +   ++ G             +  +  +      ++    + P        L
Sbjct  181  TRNDIEITRGRFRIKG----DVLEIGPAYEDRLIRIELFGDEVEAIRYVDPTTGEILESL  236

Query  208  QEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHL---EMPELSRKFGTQMYEQQVVK  264
            ++ S  P K +     R +     +  +L  Q+       ++ E  R      Y+ +++K
Sbjct  237  EQVSVYPAKHFVTPKERLESAISAIRSELKTQLDKFTYEGKLLEAQRLEQRTKYDLEMLK  296

Query  265  -------LSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTK  317
                   +   A     +E+      L  Y     +     +      L   Y+ +   K
Sbjct  297  EVGYCNGVENYARHLSGREEGSPPECLIDYFPKDWLLVVDESHVTCPQLHAMYNGDQSRK  356

Query  318  TQILCAERRL-----------LALFDDRKNELAHLATHG---------------------  345
              ++    RL              ++  K  L   AT G                     
Sbjct  357  KVLIDHGFRLPSAADNRPLKCEEFWEKSKQTLFISATPGQWELDQCDGEFIEQVIRPTGV  416

Query  346  -----PENPKLEMLEKILQRQ-FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIR  399
                    P    +E +L      +  + R ++ T T++ A  L  +L + +      +R
Sbjct  417  LDPVIDVRPSEGQIEDLLSEIRIRAEKNQRVLVTTLTKRMAEDLTDFLSENK------VR  470

Query  400  AQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG--  457
             + L         + +   ++ E+IQ  + G  ++LV  ++  EGLD+P  ++V      
Sbjct  471  VRYL--------HSEIHSIERIEIIQDLRMGEYDVLVGVNLLREGLDLPEVSLVAILDAD  522

Query  458  ---LLTNEISMVQARGRARADQSVYAFVATEGSRELKRELINE  497
                L  E S++Q  GRA       A +  +   +  +  I+E
Sbjct  523  KEGFLRAERSLIQTIGRAARHVEGVALLYADNFTDSMKRAISE  565


>sp|P26802|DDX51_DROME Probable ATP-dependent RNA helicase Dbp73D 
OS=Drosophila melanogaster OX=7227 GN=Dbp73D PE=2 SV=3
Length=687

 Score = 84.8 bits (208),  Expect = 9e-16, Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 78/189 (41%), Gaps = 15/189 (8%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            R + FT +   A  L   L+      +  +          S  S +++ + + E ++ F 
Sbjct  446  RFLCFTNSSDQATRLTFVLKVLFQKYSTKV----------SELSGNLSAKVRNERLRDFA  495

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEG  486
             G +N L+ +     G+D+   +VV+ Y    +  + +   GR ARA +   A  V TE 
Sbjct  496  AGKINGLICSDALARGIDVADVDVVLSYETPRHITTYIHRVGRTARAGRKGTAVTVLTEQ  555

Query  487  SRELKRELINEALETLME--QAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQR  544
               L ++++++A + L E       ++     EY+  +  L+   + K   Q    +N+ 
Sbjct  556  DMTLFKKILSDANKGLGEEIHVSPDIEIQHAVEYKEALAGLRSEKV-KNKNQKMAEKNRV  614

Query  545  QQFPVEHVQ  553
                + H +
Sbjct  615  ATKALIHKK  623


 Score = 44.8 bits (104),  Expect = 0.003, Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 39/127 (31%), Gaps = 14/127 (11%)

Query  20   IIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLV--NRVHLVTQHGEEFRR-MLDGRWT  76
            I +  PTG+GKT A A    + L      KV  LV      L  Q               
Sbjct  186  ICVSAPTGSGKTLAFAIPIVQLLSQRVDCKVRALVVLPVAELALQVYRVISELCSKTELE  245

Query  77   VTTLS--------GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLI  128
            V  LS         +       G      D+++ T   L   L + +      L     +
Sbjct  246  VCLLSKQHKLEDEQEKLVEQYKGKYYSKADIVVTTPGRLVDHLHATKG---FCLKSLKFL  302

Query  129  VVDECHH  135
            V+DE   
Sbjct  303  VIDEADR  309


>sp|A0PP48|UVRB_MYCUA UvrABC system protein B OS=Mycobacterium 
ulcerans (strain Agy99) OX=362242 GN=uvrB PE=3 SV=1
Length=701

 Score = 84.8 bits (208),  Expect = 9e-16, Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 69/172 (40%), Gaps = 20/172 (12%)

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
              R ++ T T++ A  L  +L +              +G       + +    + E++++
Sbjct  447  DQRVLVTTLTKKMAEDLTDYLLE--------------MGIRVRYLHSEVDTLRRVELLRQ  492

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +  S++Q  GRA  + S    
Sbjct  493  LRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSARSLIQTIGRAARNVSGEVH  552

Query  482  VATEGSRELKRELINEALETLMEQ-AVAAVQKMDQAEYQAKIRDLQQAALTK  532
            +  +   +  +E I+E      +Q A      +D    + KI D+      +
Sbjct  553  MYADKITDSMKEAIDETERRRAKQVAYNEANGIDPQPLRKKIADILDQVYRE  604


>sp|A6ZL85|MAK5_YEAS7 ATP-dependent RNA helicase MAK5 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=MAK5 PE=3 SV=1
Length=769

 Score = 84.8 bits (208),  Expect = 9e-16, Method: Composition-based stats.
 Identities = 49/292 (17%), Positives = 94/292 (32%), Gaps = 52/292 (18%)

Query  229  FGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN  288
            F +LL+K    I    ++  L      ++ +       E      L E+R    +    +
Sbjct  306  FLELLEKDNTLIKRFSKVDTLILDEADRLLQDGHFDEFEKIIKHLLVERRKNRENSEGSS  365

Query  289  DAL--LIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATH--  344
                 LI     ++D    L        V   +    E  L A+     +++   +    
Sbjct  366  KIWQTLIFSATFSIDLFDKLSS---SRQVKDRRFKNNEDELNAVIQHLMSKIHFNSKPVI  422

Query  345  ---GPENPKLEMLEKILQR-----------QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQ  390
                PE+     +++ L              F +      +IF     S   L ++L   
Sbjct  423  IDTNPESKVSSQIKESLIECPPLERDLYCYYFLTMFPGTTLIFCNAIDSVKKLTVYLNN-  481

Query  391  QGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN----------------L  434
                         +G       + MTQ+++ + +++F+  +                  +
Sbjct  482  -------------LGIPAFQIHSSMTQKNRLKSLERFKQQSAKQKTINHSNPDSVQLSTV  528

Query  435  LVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATE  485
            L+A+ VA  GLDIP    V+ Y L  +    +   GR ARA     + +   
Sbjct  529  LIASDVAARGLDIPGVQHVIHYHLPRSTDIYIHRSGRTARAGCEGVSAMICS  580


 Score = 49.4 bits (116),  Expect = 1e-04, Method: Composition-based stats.
 Identities = 47/347 (14%), Positives = 108/347 (31%), Gaps = 44/347 (13%)

Query  26   TGAGKTR-----AAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDG-----RW  75
            TG+GKT          +     +       ++      L  Q  +  +++ +      ++
Sbjct  213  TGSGKTLAYGIPIVEKLISNFSQKNKKPISLIFTPTRELAHQVTDHLKKICEPVLAKSQY  272

Query  76   TVTTLSG--DMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC  133
            ++ +L+G   +  +           ++I T       L   +       +    +++DE 
Sbjct  273  SILSLTGGLSIQKQQRLLKYDNSGQIVIATPGRFLE-LLEKDNTLIKRFSKVDTLILDEA  331

Query  134  HHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLD  193
                +D  ++        L ++R +                 S+    I   L   A   
Sbjct  332  DRLLQDGHFDEFEKIIKHLLVERRK-------------NRENSEGSSKIWQTLIFSATFS  378

Query  194  TWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKF  253
                         L +      +  +   + ++D    +++ LM +IH + +   +    
Sbjct  379  I-----------DLFDKLSSSRQVKDRRFKNNEDELNAVIQHLMSKIHFNSKPVIIDTNP  427

Query  254  GTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHRE  313
             +++  Q    L E      L+        L  +    LI     A+D++  L  + +  
Sbjct  428  ESKVSSQIKESLIEC---PPLERDLYCYYFLTMFPGTTLIF--CNAIDSVKKLTVYLNNL  482

Query  314  HVTKTQILC--AERRLLALFDDRKNELAHLATHGPENPKLEMLEKIL  358
             +   QI     ++  L   +  K + A   T    NP    L  +L
Sbjct  483  GIPAFQIHSSMTQKNRLKSLERFKQQSAKQKTINHSNPDSVQLSTVL  529


>sp|A4YAN1|RAPA_SHEPC RNA polymerase-associated protein RapA OS=Shewanella 
putrefaciens (strain CN-32 / ATCC BAA-453) OX=319224 
GN=rapA PE=3 SV=1
Length=968

 Score = 85.2 bits (209),  Expect = 9e-16, Method: Composition-based stats.
 Identities = 74/453 (16%), Positives = 153/453 (34%), Gaps = 42/453 (9%)

Query  27   GAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGP  86
            G GKT  A  +  + L T    +V+V+V    L  Q   E  R  + R++V      +  
Sbjct  179  GLGKTIEAGLIIHQQLLTGRAERVLVIVPD-TLRHQWLVEMLRRFNLRFSVFDEDRCVEA  237

Query  87   RAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHT--HKDTVYNV  144
             A   +      L+IC+       L   +  +      + L+VVDE HH    ++     
Sbjct  238  YADHDNPFYTEQLVICS----LELLRKKKRLDQALDADWDLLVVDEAHHLEWTEEAPSRA  293

Query  145  IMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCA-NLDTWCIMSPQNC  203
                  ++    ++ +P VL LTA+P         G  +H  +L   + D +        
Sbjct  294  -----YQVVEALSEVVPGVLLLTATP------DQLGHESHFARLRLLDPDRFYDYDAFLA  342

Query  204  CPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVV  263
                 +      +     + +  D   + L +L+ +     ++    R       + ++ 
Sbjct  343  EEDSYKDVAMAAEALAG-NAKLPDAAINSLTELLSEK----DIAPSIRLIQADGIDSELQ  397

Query  264  KLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCA  323
            + + +  L  L ++      L R + A +     R  +         +      + ++  
Sbjct  398  QAARSELLQELLDRHGTGRVLYRNSRASVKGFPKRFFNPHPQTMPEQYLTAARVSSMMGG  457

Query  324  ERRL---LALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSA  380
             + L    A     +        +     K +     L     S  S + +I     ++A
Sbjct  458  HKTLEAKAAQALSPEKLYQEFEDNSASWWKFDPRVDWLIAFLKSHRSKKVLIIASQAETA  517

Query  381  HSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF--QDGTLNLLVAT  438
             SL   L+ ++G+Q                    M+  ++ +    F  ++G    L+ +
Sbjct  518  LSLEEALRTREGIQATVFH-------------EGMSIIERDKAGAYFAQEEGGAQALICS  564

Query  439  SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
             +  EG +    + +V + L  N   + Q  GR
Sbjct  565  EIGSEGRNFQFASHLVLFDLPLNPDLLEQRIGR  597


>sp|A1RFP5|RAPA_SHESW RNA polymerase-associated protein RapA OS=Shewanella 
sp. (strain W3-18-1) OX=351745 GN=rapA PE=3 SV=1
Length=968

 Score = 85.2 bits (209),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 76/452 (17%), Positives = 149/452 (33%), Gaps = 40/452 (9%)

Query  27   GAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGP  86
            G GKT  A  +  + L T    +V+V+V    L  Q   E  R  + R++V      +  
Sbjct  179  GLGKTIEAGLIIHQQLLTGRAERVLVIVPD-TLRHQWLVEMLRRFNLRFSVFDEDRCVEA  237

Query  87   RAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHT--HKDTVYNV  144
             A   +      L+IC+       L   +  +      + L+VVDE HH    ++     
Sbjct  238  YADHDNPFYTEQLVICS----LELLRKKKRLDQALDADWDLLVVDEAHHLEWTEEAPSRA  293

Query  145  IMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCC  204
                  ++    ++ +P VL LTA+P         G  +H  +L   LD           
Sbjct  294  -----YQVVEALSEVVPGVLLLTATP------DQLGHESHFARL-RLLDPDRFYDYDAFL  341

Query  205  PQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVK  264
             +  E+S +                 D     + ++    ++    R       +  V +
Sbjct  342  AE--ENSYKDVA-IAAEALAGNAKLPDAAINSLTELLSEKDIAPSIRLIQADGIDSDVQQ  398

Query  265  LSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAE  324
             + +  L  L ++      L R + A +     R  +         +      + ++   
Sbjct  399  AARSELLQELLDRHGTGRVLYRNSRASVKGFPKRFFNPHPQTMPEQYLTAARVSSMMGGH  458

Query  325  RRL---LALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAH  381
            + L    A     +        +     K +     L     S  S + +I     ++A 
Sbjct  459  KTLEAKAAQALSPEKLYQEFEDNSASWWKFDPRVDWLIAFLKSHRSKKVLIIASQAETAL  518

Query  382  SLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF--QDGTLNLLVATS  439
            SL   L+ ++G+Q                    M+  ++ +    F  ++G    L+ + 
Sbjct  519  SLEEALRTREGIQATVFH-------------EGMSIIERDKAGAYFAQEEGGAQALICSE  565

Query  440  VAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
            +  EG +    + +V + L  N   + Q  GR
Sbjct  566  IGSEGRNFQFASHLVLFDLPLNPDLLEQRIGR  597


>sp|Q7MM80|UVRB_VIBVY UvrABC system protein B OS=Vibrio vulnificus 
(strain YJ016) OX=196600 GN=uvrB PE=3 SV=2
Length=676

 Score = 84.8 bits (208),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 76/185 (41%), Gaps = 20/185 (11%)

Query  366  NSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQ  425
               R ++ T T++ A  L  +L +       D++ + L         + +   ++ E+I+
Sbjct  446  KDERVLVTTLTKRMAEDLTEYLHEH------DVKVRYL--------HSDIDTVERVEIIR  491

Query  426  KFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYA  480
              + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  +    A
Sbjct  492  DLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLHGKA  551

Query  481  FVATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQ  539
             +  +  ++ +K+ +         +QA      +     +  I+D+ +     ++ +   
Sbjct  552  ILYADSITKSMKKAMDETERRREKQQAYNEKMGIQPQALKRNIKDIMELGDITKSRKQKV  611

Query  540  RENQR  544
             +   
Sbjct  612  SKTVP  616


>sp|Q8D891|UVRB_VIBVU UvrABC system protein B OS=Vibrio vulnificus 
(strain CMCP6) OX=216895 GN=uvrB PE=3 SV=1
Length=676

 Score = 84.8 bits (208),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 76/185 (41%), Gaps = 20/185 (11%)

Query  366  NSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQ  425
               R ++ T T++ A  L  +L +       D++ + L         + +   ++ E+I+
Sbjct  446  KDERVLVTTLTKRMAEDLTEYLHEH------DVKVRYL--------HSDIDTVERVEIIR  491

Query  426  KFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYA  480
              + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  +    A
Sbjct  492  DLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLHGKA  551

Query  481  FVATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQ  539
             +  +  ++ +K+ +         +QA      +     +  I+D+ +     ++ +   
Sbjct  552  ILYADSITKSMKKAMDETERRREKQQAYNEKMGIQPQALKRNIKDIMELGDITKSRKQKV  611

Query  540  RENQR  544
             +   
Sbjct  612  SKTVP  616


>sp|Q83S42|UVRB_SHIFL UvrABC system protein B OS=Shigella flexneri 
OX=623 GN=uvrB PE=3 SV=1
Length=673

 Score = 84.8 bits (208),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 34/194 (18%), Positives = 74/194 (38%), Gaps = 20/194 (10%)

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R ++ T T++ A  L  +L++               G       + +   ++ E+I+ 
Sbjct  446  NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  + +  A 
Sbjct  492  LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI  551

Query  482  VATEGSR-ELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR  540
            +  + S   + + +         +Q       +       K+ D+          +A  R
Sbjct  552  LYGDRSTPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR  611

Query  541  ENQRQQFPVEHVQL  554
               R     ++V +
Sbjct  612  GKSRPIVEPDNVPM  625


>sp|Q0T6I1|UVRB_SHIF8 UvrABC system protein B OS=Shigella flexneri 
serotype 5b (strain 8401) OX=373384 GN=uvrB PE=3 SV=1
Length=673

 Score = 84.8 bits (208),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 34/194 (18%), Positives = 74/194 (38%), Gaps = 20/194 (10%)

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R ++ T T++ A  L  +L++               G       + +   ++ E+I+ 
Sbjct  446  NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  + +  A 
Sbjct  492  LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI  551

Query  482  VATEGSR-ELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR  540
            +  + S   + + +         +Q       +       K+ D+          +A  R
Sbjct  552  LYGDRSTPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR  611

Query  541  ENQRQQFPVEHVQL  554
               R     ++V +
Sbjct  612  GKSRPIVEPDNVPM  625


>sp|Q4P6N0|HAS1_USTMA ATP-dependent RNA helicase HAS1 OS=Ustilago 
maydis (strain 521 / FGSC 9021) OX=237631 GN=HAS1 PE=3 SV=2
Length=574

 Score = 84.5 bits (207),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 87/236 (37%), Gaps = 19/236 (8%)

Query  264  KLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTK-TQILC  322
            KL +   L      R+   HL+     +  +     +D    + +    + + +  +IL 
Sbjct  168  KLQKGVNLIVATPGRLLD-HLQNTKGFVFSNLKALCIDEADRILEIGFEDEMRQIVKILP  226

Query  323  AERRLLALFDD----RKNELAHLA-THGPENPKL------EMLEKILQRQFSSSNSPR-G  370
             + R   LF      +  +LA ++   GP    +        + ++ Q      +  R  
Sbjct  227  NDNRQSMLFSATQTTKVQDLARISLRPGPLYINVHADLAASTVSRLEQGYVVCESDRRFL  286

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            ++FT  +++A   ++         +V   + LL          H  Q+ Q+     F+  
Sbjct  287  LLFTFLKKNAGKKIIVFMS--SCNSVKYHSDLLNFIDVPVLDLHGKQKQQKRTNTFFEYC  344

Query  431  TLNL--LVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVA  483
                  L+ T VA  GLDIP  + ++++    +    +   GR ARA  S  + + 
Sbjct  345  NAPCGTLLCTDVAARGLDIPSVDWIIQFDPPDDPRDYIHRVGRTARAGNSGKSLLF  400


 Score = 52.1 bits (123),  Expect = 1e-05, Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 48/135 (36%), Gaps = 9/135 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTR---AAAYVAKRHLETVD--GAKVVVLVNRVHLVT  61
            Q   I P + GK+++    TG+GKT      A      L+     G   +++     L  
Sbjct  77   QARCIPPLMAGKDVLGAAQTGSGKTLSFLIPAIEMLHRLKFKPRNGTGAIIISPTRELAL  136

Query  62   QHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
            Q     + ++         + G    RA    L +  +L++ T   L   L + +    V
Sbjct  137  QIFGVAKELMAHHHQTFGIIMGGANRRAEADKLQKGVNLIVATPGRLLDHLQNTK--GFV  194

Query  121  ELTVFSLIVVDECHH  135
              +    + +DE   
Sbjct  195  -FSNLKALCIDEADR  208


>sp|Q9CXF7|CHD1L_MOUSE Chromodomain-helicase-DNA-binding protein 
1-like OS=Mus musculus OX=10090 GN=Chd1l PE=1 SV=1
Length=900

 Score = 84.8 bits (208),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 95/570 (17%), Positives = 180/570 (32%), Gaps = 86/570 (15%)

Query  1    MELRSYQWEVIM---PALEGKNIIIWLP-TGAGKT-RAAAYVAKRHLETVDGAKVVVLVN  55
            + LRSYQ E +         +N  I     G GKT +  A +        D    +VL  
Sbjct  38   IRLRSYQLEGVNWLVQCFHCQNGCILGDEMGLGKTCQTIALLIYLVGRLNDEGPFLVLCP  97

Query  56   RVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARC---HDLLICTAELLQMALT  112
               L +   EE  R   G   VT  +GD   RA      R      +L+ T E+      
Sbjct  98   LSVL-SNWKEEMERFAPGLSCVT-YTGDKEERARLQQDLRQESGFHVLLTTYEICLKD--  153

Query  113  SPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGT  172
                   ++   +S++ VDE H            S  L   L     + ++L LT +P  
Sbjct  154  ----ASFLKSFSWSVLAVDEAHRLKNQ-------SSLLHRTLSEFSAVFRLL-LTGTPI-  200

Query  173  GGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDL  232
               + L    + +  +  +L          C  Q+++  Q+            +      
Sbjct  201  --QNSLRELYSLLCVVEPDL---------FCREQVEDFVQR------YQDIEKESKSASE  243

Query  233  LKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALL  292
            L +L+         P L R+   Q+  +   K            Q+ Y   +   +    
Sbjct  244  LHRLLQ--------PFLLRRVKAQVATELPKKTEVVVYHGMSALQKKYYKAILMKDLDAF  295

Query  293  IHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLE  352
             ++T + V     L         T+ +       L    +    E+         + KL 
Sbjct  296  ENETAKKVKLQNIL---------TQLRKCVDHPYLFDGVEPEPFEVGEHLIEA--SGKLH  344

Query  353  MLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQS  412
            +L+++L   +S  +  R ++F++       L  ++                 G       
Sbjct  345  LLDRLLAFLYSGGH--RVLLFSQMTHMLDILQDYMD--------------YRGYSYERVD  388

Query  413  THMTQRDQQEVIQKFQDGTLNL---LVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
              +   ++   I+ F  G   +   L++T     G+++   + V+      N  + +QA 
Sbjct  389  GSVRGEERHLAIKNF--GNQPIFVFLLSTRAGGVGMNLTAADTVIFVDSDFNPQNDLQAA  446

Query  470  GRA-RADQSVYAFVATEGSRELKRELINEALET---LMEQAVAAVQKMDQAEYQAKIRDL  525
             RA R  Q+    V     R+   E++     +   L    +        A+  +   D 
Sbjct  447  ARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMVIEGGHFTPGAQKPSAEADF  506

Query  526  QQAALTKRAAQAAQRENQRQQFPVEHVQLL  555
            Q + + K                ++   +L
Sbjct  507  QLSEILKFGLDKLLSSEGSSMEDIDLKSIL  536


>sp|A5DEZ5|MS116_PICGU ATP-dependent RNA helicase MSS116, mitochondrial 
OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 
566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 
GN=MSS116 PE=3 SV=2
Length=714

 Score = 84.8 bits (208),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 46/329 (14%), Positives = 96/329 (29%), Gaps = 19/329 (6%)

Query  185  VLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLM----DQI  240
            V+    +L        +        +  +    + L   R  D        ++     ++
Sbjct  153  VVAPTRDLALQIEAEFKKVLQHQTRNVHRKTDTFVLIGGRKNDLHPKAKAAIVIATPGRL  212

Query  241  HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV  300
               L  P +   F    Y   V   ++     G            R   A  +       
Sbjct  213  EAILRDPRMLPMFSDLKYR--VYDEADRLLDQGFAPTLEVIEERLRDAKAEALEPDNHFK  270

Query  301  DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG----PENPK--LEML  354
             AL +        +     I      +  +  D+  E +H   H      ++ K   E  
Sbjct  271  TALFSATVDDAVTNFAHETIGKEYEYINCV--DKDAEESHENIHQGIVRTQSIKDSFEAS  328

Query  355  EKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQ-TVDIRAQLLIGAGNSSQST  413
               +    +     + I+F  T          LQ+ +  +      A    G+       
Sbjct  329  FSYILNHIND-KYFKAIVFLPTITGTEYYYRVLQRAKREELYDSETATKKYGSRILRLHG  387

Query  414  HMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARG---  470
             M+Q  +   +++F+  +  +LV T VA  GLD    + V++    ++    +   G   
Sbjct  388  KMSQSARDRTVKEFRRTSHGVLVCTDVAARGLDFNDVSHVIQMCPSSSVADYIHKIGRTA  447

Query  471  RARADQSVYAFVATEGSRELKRELINEAL  499
            RA A      F++    + ++       +
Sbjct  448  RAGARGKARIFISEPEMKFIETLQRERGI  476


 Score = 49.0 bits (115),  Expect = 1e-04, Method: Composition-based stats.
 Identities = 49/313 (16%), Positives = 91/313 (29%), Gaps = 28/313 (9%)

Query  7    QWEVIMPALEGKNIIIW-LPTGAGKTRA-AAYVAKRHLET---VDGAKV--VVLVNRVHL  59
            Q   IMP ++ K  ++    TG GKT A A    +  LE        ++  +V+     L
Sbjct  101  QQRAIMPMMDTKTGVVVRAKTGTGKTLAFALPCIQAALENPQQTQKGRIQALVVAPTRDL  160

Query  60   VTQHGEEFRRMLDGRWTVTTLSGDM----GPRAGFGHLARCHDLLICTAELLQMALTSPE  115
              Q   EF+++L  +        D     G R    H      ++I T   L+  L  P 
Sbjct  161  ALQIEAEFKKVLQHQTRNVHRKTDTFVLIGGRKNDLHPKAKAAIVIATPGRLEAILRDPR  220

Query  116  EEEHVELTVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRA---QPLPQVLGLTASP  170
                   +     V DE              ++ + L      A       +    +A+ 
Sbjct  221  MLPMF--SDLKYRVYDEADRLLDQGFAPTLEVIEERLRDAKAEALEPDNHFKTALFSATV  278

Query  171  GTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFG  230
                 +     I    +    +D            +  E+  Q   +        +  F 
Sbjct  279  DDAVTNFAHETIGKEYEYINCVD--------KDAEESHENIHQGIVRTQSIKDSFEASFS  330

Query  231  DLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDA  290
             +L  + D+    +         GT+ Y + + +             + Y   + R +  
Sbjct  331  YILNHINDKYFKAIVFLPTIT--GTEYYYRVLQRAKREELYDSETATKKYGSRILRLHGK  388

Query  291  LLIHDTVRAVDAL  303
            +      R V   
Sbjct  389  MSQSARDRTVKEF  401


>sp|B5YJW4|UVRB_THEYD UvrABC system protein B OS=Thermodesulfovibrio 
yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) OX=289376 
GN=uvrB PE=3 SV=1
Length=671

 Score = 84.5 bits (207),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 81/202 (40%), Gaps = 27/202 (13%)

Query  345  GPENPKLEM------LEKILQR-QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD  397
            G  +PK+E+      +E +L+      S   R ++ T T++ A  L  +           
Sbjct  421  GLVDPKIEVRPATNQVEDLLEEIHKRVSRGERVLVTTITKKMAEDLTDYYTT--------  472

Query  398  IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG  457
                  +G       + +   ++ E+++  + G  ++L+  ++  EGLD+P  ++V  + 
Sbjct  473  ------VGIKAKYLHSDIDTLERVEILKDLRLGKFDVLIGVNLLREGLDLPEVSLVAIFD  526

Query  458  -----LLTNEISMVQARGRA-RADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQ  511
                  L +E S++Q  GRA R       F A   +  +K+ +        ++       
Sbjct  527  ADKEGFLRSERSLIQTAGRASRNINGTVIFYADTVTDSMKKAIEETERRREIQMKYNKKN  586

Query  512  KMDQAEYQAKIRDLQQAALTKR  533
             +     ++KI+D+  +   K 
Sbjct  587  GISPETVKSKIKDILSSIYEKD  608


>sp|Q87MX6|UVRB_VIBPA UvrABC system protein B OS=Vibrio parahaemolyticus 
serotype O3:K6 (strain RIMD 2210633) OX=223926 GN=uvrB 
PE=3 SV=1
Length=676

 Score = 84.5 bits (207),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 77/183 (42%), Gaps = 20/183 (11%)

Query  363  SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE  422
             ++   R ++ T T++ A  L  +L +       D+R + L         + +   ++ E
Sbjct  443  RAAKEERVLVTTLTKRMAEDLTEYLHEH------DVRVRYL--------HSDIDTVERVE  488

Query  423  VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQS  477
            +I+  + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  +  
Sbjct  489  IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNIE  548

Query  478  VYAFVATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQ  536
              A +  +  ++ +K+ +         +QA      +     +  I+D+ +     ++ +
Sbjct  549  GKAILYADNITKSMKKAMDETNRRREKQQAYNEKMGITPQALKRNIKDIMELGDITKSKR  608

Query  537  AAQ  539
               
Sbjct  609  QRN  611


>sp|Q6FIL3|HAS1_CANGA ATP-dependent RNA helicase HAS1 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=HAS1 PE=3 SV=1
Length=494

 Score = 84.1 bits (206),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 27/170 (16%), Positives = 54/170 (32%), Gaps = 17/170 (10%)

Query  357  ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT  416
            +L      +   + I+F  +  S       L        +D+    L G           
Sbjct  266  LLFSFLKRNQKKKIIVFLSSCNSVKYYAELL------NYIDLPVLELHG--------KQK  311

Query  417  QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR--  473
            Q+ +     +F +    +L+ T VA  GLDIP  + ++++    +    +   GR AR  
Sbjct  312  QQKRTNTFFEFCNAERGILICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGT  371

Query  474  ADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIR  523
              +               R L    +     +         Q++ +  I+
Sbjct  372  NGKGKSLMFLIPNELGFLRYLKAAKVPLNEYEFPTNKIANVQSQLEKLIK  421


 Score = 56.7 bits (135),  Expect = 4e-07, Method: Composition-based stats.
 Identities = 28/136 (21%), Positives = 50/136 (37%), Gaps = 11/136 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYV----AKRHLETVD--GAKVVVLVNRVHLV  60
            Q   I P + G++++    TG+GKT  A  +        L+     G  V+++     L 
Sbjct  56   QARTIPPLMAGRDVLGAAKTGSGKTL-AFLLPTIELLHSLKFKPRNGTGVIIITPTRELA  114

Query  61   TQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
             Q     R +++        + G    R     L +  +LL+ T   L   L + +    
Sbjct  115  LQIFGVVRELMEFHSQTFGIVIGGANRRQEAEKLMKGVNLLVATPGRLLDHLQNTKGFIF  174

Query  120  VELTVFSLIVVDECHH  135
              L     +V+DE   
Sbjct  175  KNLKA---LVIDEADR  187


>sp|B2TQS8|UVRB_CLOBB UvrABC system protein B OS=Clostridium botulinum 
(strain Eklund 17B / Type B) OX=935198 GN=uvrB PE=3 
SV=1
Length=657

 Score = 84.5 bits (207),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 41/258 (16%), Positives = 89/258 (34%), Gaps = 22/258 (9%)

Query  304  AALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFS  363
              +              L   + +          L       P   +++ L   +Q   S
Sbjct  383  KKINQVMFVSATPAQYELEHSQSIAEQVIRPTGLLDPEIIIKPVKGQIDDLYTEIQETIS  442

Query  364  SSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEV  423
                 R +I T T++ A  L  ++ +              +G   +   + +   ++ ++
Sbjct  443  R--GYRILITTLTKRMAEDLTKYMIE--------------LGVKATYMHSDIDTIERMKI  486

Query  424  IQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGR-ARADQS  477
            I+  + G  ++LV  ++  EGLDIP   +V          L +E S++Q  GR AR  +S
Sbjct  487  IRDLRLGEYDVLVGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGRAARNSES  546

Query  478  VYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQA  537
                 A   ++ +K+ +        ++        +       ++R+L +A      +  
Sbjct  547  KVIMYADNITKSMKKAISETERRRKIQTEYNEEHGIIPQTINKEVRELIEATKVAEESTE  606

Query  538  AQRENQRQQFPVEHVQLL  555
               E  +     E  +L+
Sbjct  607  YGMEVTKSLTKKEAKKLI  624


>sp|Q5X0E6|UVRB_LEGPL UvrABC system protein B OS=Legionella pneumophila 
(strain Lens) OX=297245 GN=uvrB PE=3 SV=1
Length=663

 Score = 84.5 bits (207),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 35/187 (19%), Positives = 73/187 (39%), Gaps = 21/187 (11%)

Query  365  SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI  424
            +   R ++ T T++ A  L  +L +               G       + +   ++ E+I
Sbjct  443  AQGSRILVTTLTKRMAEDLTEYLSE--------------HGIKVRYLHSDVDTVERMEII  488

Query  425  QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVY  479
            +  + G  ++LV  ++  EGLD+P   +V          L +E S++Q  GRA  +    
Sbjct  489  RDLRLGEFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTIGRAARNVKGR  548

Query  480  AFVATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD-LQQAALTKRAAQA  537
            A +  +  +  ++R L         ++A      +        + D L+ A + KR    
Sbjct  549  AILYADNITGSMQRALTETERRREKQKAFNLKHGITPKGINKSVEDILEGAYIGKRKTMV  608

Query  538  AQRENQR  544
            A++  + 
Sbjct  609  AEQAPRY  615


 Score = 37.9 bits (86),  Expect = 0.32, Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 23/63 (37%), Gaps = 7/63 (11%)

Query  11  IMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRM  70
           +   L  + ++    TG+GKT   A+V +           +++     L  Q   EF+  
Sbjct  28  LESGLAKQTLLGV--TGSGKTFTIAHVIQAM-----KRPTLIMAPNKTLAAQLYGEFKAF  80

Query  71  LDG  73
              
Sbjct  81  FPD  83


>sp|Q9JJY4|DDX20_MOUSE Probable ATP-dependent RNA helicase DDX20 
OS=Mus musculus OX=10090 GN=Ddx20 PE=1 SV=2
Length=825

 Score = 84.8 bits (208),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 51/143 (36%), Gaps = 14/143 (10%)

Query  335  KNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQ  394
            K     + ++   +   E   + LQ  FS     + ++F+     A  L   L  +    
Sbjct  278  KQYYQVVNSYPLAHKIFEEKTQHLQELFSKVPFNQALVFSNLHSRAQHLADILSSK----  333

Query  395  TVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV  454
                      G      S +M Q  + + + K +     +L++T +   G+D    N+VV
Sbjct  334  ----------GFPTECISGNMNQNQRLDAMAKLKQFHCRVLISTDLTSRGIDAEKVNLVV  383

Query  455  RYGLLTNEISMVQARGRARADQS  477
               +  +  + +   GRA    +
Sbjct  384  NLDVPLDWETYMHRIGRAGRFGT  406


 Score = 43.6 bits (101),  Expect = 0.007, Method: Composition-based stats.
 Identities = 17/129 (13%), Positives = 46/129 (36%), Gaps = 6/129 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVD-GAKVVVLVNRVHLVTQHGE  65
            Q + I     G ++I+   +G GKT   + +A   L   +   ++++L     +  Q   
Sbjct  90   QLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLILENYSTQILILAPTREIAVQIHS  149

Query  66   EFRRMLDGRWTVT-TLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
                +      +   +     P +      +   + + +   ++  +    E +++    
Sbjct  150  VITAIGIKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLI----ELDYLNPGS  205

Query  125  FSLIVVDEC  133
              L ++DE 
Sbjct  206  IRLFILDEA  214


>sp|O13622|MS116_SCHPO ATP-dependent RNA helicase mss116, mitochondrial 
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) 
OX=284812 GN=mss116 PE=3 SV=1
Length=535

 Score = 84.1 bits (206),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 29/155 (19%), Positives = 58/155 (37%), Gaps = 20/155 (13%)

Query  365  SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI  424
            + S R I+F  T      +   L+    +    +              + +T   ++ + 
Sbjct  290  NPSSRIIVFLPTISMVDFVGGVLENHLKIPCFILH-------------SGLTTAQRRSIT  336

Query  425  QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSV--YAF  481
            + F+     +L AT V   G+D P+   VV+    +N    +   GR  RA ++   Y  
Sbjct  337  ESFRKCQSGILFATDVVARGMDFPNITQVVQITGPSNTDDYIHRIGRTGRAGKTGEAYLI  396

Query  482  VATEGSRELKR----ELINEALETLMEQAVAAVQK  512
            +  +    L       L    +E L +QA++ ++ 
Sbjct  397  LLEQEKPFLNSIKHLPLKRATIEPLSDQALSTLRS  431


 Score = 49.8 bits (117),  Expect = 7e-05, Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 48/127 (38%), Gaps = 13/127 (10%)

Query  18   KNIIIWLPTGAGKTRAAAYVA--KRHLETVDG---AKV--VVLVNRVHLVTQHGEEFRR-  69
            +N ++   TG GKT  A  +   K  L+       +K+  V+L     L  Q  EE R+ 
Sbjct  77   ENAVVQAKTGTGKTL-AFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKL  135

Query  70   -MLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLI  128
                G      + G+   R          +LLI T   L+  L +P   E +    F   
Sbjct  136  TYGTGIRVSYAIGGNSKMREENAIRRGNANLLIATPGRLEDHLQNPRILESLSTDSF---  192

Query  129  VVDECHH  135
            ++DE   
Sbjct  193  ILDEADR  199


>sp|Q2JRR3|UVRB_SYNJA UvrABC system protein B OS=Synechococcus 
sp. (strain JA-3-3Ab) OX=321327 GN=uvrB PE=3 SV=1
Length=695

 Score = 84.5 bits (207),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 58/123 (47%), Gaps = 19/123 (15%)

Query  368  PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF  427
             R I+ T T++ A  L  +LQ++       IR + L         + ++  ++ E++Q F
Sbjct  471  ERVIVTTLTKRMAEDLTEYLQER------GIRVRYL--------HSEISSIERIEILQDF  516

Query  428  QDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAFV  482
            ++G  ++LV  ++  EGLD+P  ++V          L  E S++Q  GRA  +      +
Sbjct  517  REGAFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQMIGRAARNVRGTVVM  576

Query  483  ATE  485
              +
Sbjct  577  YAD  579


>sp|C5BEJ2|UVRB_EDWI9 UvrABC system protein B OS=Edwardsiella 
ictaluri (strain 93-146) OX=634503 GN=uvrB PE=3 SV=1
Length=672

 Score = 84.5 bits (207),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 42/244 (17%), Positives = 89/244 (36%), Gaps = 26/244 (11%)

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
              R ++ T T++ A  L  +L++               G       + +   ++ E+I+ 
Sbjct  446  GERVLVTTLTKRMAEDLTEYLEE--------------HGVRVRYLHSDIDTVERMEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  + LV  ++  EGLD+P  ++V          L +E S++Q  GRA  + +  A 
Sbjct  492  LRLGEFDALVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAI  551

Query  482  VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR  540
            +  +  +  + R +         +QA      +       K+ D+ Q       ++    
Sbjct  552  LYADKITPSMARAIGETERRRERQQAFNLAHGITPQALNKKVTDILQLGDGPVRSRTKGA  611

Query  541  ENQRQQFPVEHVQLLCINCMVAVGHGSDLRKVEG-THHVNVNPNFSNYYNVSRDPVVINK  599
              QR   P      L      A      ++++E   +    N  F     +  +  ++ +
Sbjct  612  RGQRAAEPHPDYHTL-----SAKQIEQQIQRLETQMYQHAQNLEFEQAAALRDEIHILRE  666

Query  600  VFKD  603
             FK+
Sbjct  667  QFKN  670


>sp|A5I9P3|UVRB_LEGPC UvrABC system protein B OS=Legionella pneumophila 
(strain Corby) OX=400673 GN=uvrB PE=3 SV=1
Length=663

 Score = 84.5 bits (207),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 35/187 (19%), Positives = 74/187 (40%), Gaps = 21/187 (11%)

Query  365  SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI  424
            +   R ++ T T++ A  L  +L +               G       + +   ++ E+I
Sbjct  443  AQGSRILVTTLTKRMAEDLTEYLSE--------------HGIKVRYLHSDVDTVERMEII  488

Query  425  QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVY  479
            +  + G  ++LV  ++  EGLD+P   +V          L +E S++Q  GRA  +    
Sbjct  489  RDLRLGEFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTIGRAARNVKGR  548

Query  480  AFVATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD-LQQAALTKRAAQA  537
            A +  +  +  ++R L+        ++A      +        + D L+ A + KR    
Sbjct  549  AILYADTMTGSMQRALMETERRREKQKAFNLKHGITPKGINKSVEDILEGAYIGKRKTMV  608

Query  538  AQRENQR  544
            A++  + 
Sbjct  609  AEQAPRY  615


 Score = 38.2 bits (87),  Expect = 0.31, Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 23/63 (37%), Gaps = 7/63 (11%)

Query  11  IMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRM  70
           +   L  + ++    TG+GKT   A+V +           +++     L  Q   EF+  
Sbjct  28  LESGLAKQTLLGV--TGSGKTFTIAHVIQAM-----KRPTLIMAPNKTLAAQLYGEFKAF  80

Query  71  LDG  73
              
Sbjct  81  FPD  83


>sp|Q5ZBH5|RH25_ORYSJ DEAD-box ATP-dependent RNA helicase 25 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os01g0618400 PE=2 
SV=1
Length=594

 Score = 84.1 bits (206),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 57/146 (39%), Gaps = 14/146 (10%)

Query  332  DDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQ  391
            ++   +++ +    P +    +L  +L++  +     + IIF  T      L+  +  Q 
Sbjct  349  EETHAQVSQMFMIAPLDLHFSILYDVLKKHVAEDADYKVIIFC-TTAMVTKLVAEILSQL  407

Query  392  GLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN  451
             L   +I              +  +Q  + +V  +F+     +LV++ V+  G+D P   
Sbjct  408  RLNIREIH-------------SRKSQSARTKVSDEFRKSRGLILVSSDVSARGVDYPDVT  454

Query  452  VVVRYGLLTNEISMVQARGRARADQS  477
            +V++ G+  +    +   GR      
Sbjct  455  LVIQVGVPADRQQYIHRLGRTGRKGK  480


 Score = 48.3 bits (113),  Expect = 2e-04, Method: Composition-based stats.
 Identities = 25/134 (19%), Positives = 51/134 (38%), Gaps = 15/134 (11%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYV-AKRHLETVDGAK---------VVVLVNRVHLVTQHG  64
            L+GK+++    TG GKT  A  + A   L  +  ++         ++V+     L  Q  
Sbjct  161  LQGKDVLAKAKTGTGKT-VAFLLPAIEVLSALPNSRRDQLRPSINLLVMCPTRELAIQVA  219

Query  65   EEFRRMLDGRWTVT---TLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVE  121
             E +++L    ++     + G    +      A    +L+ T   L+  + +        
Sbjct  220  VEAKKLLKYHRSLGVQVVIGGTRLTQEQRSMQANPCQILVATPGRLKDHVENTPGFS-TR  278

Query  122  LTVFSLIVVDECHH  135
            L    ++V+DE   
Sbjct  279  LKGVKVLVLDEADR  292


>sp|B4ESU7|UVRB_PROMH UvrABC system protein B OS=Proteus mirabilis 
(strain HI4320) OX=529507 GN=uvrB PE=3 SV=1
Length=669

 Score = 84.5 bits (207),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 86/238 (36%), Gaps = 22/238 (9%)

Query  307  QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSN  366
            Q  Y      K ++  +   ++         L  +    P   +++ L   ++    ++ 
Sbjct  388  QTIYVSATPGKYELEKSGNDIVEQVVRPTGLLDPVVEVRPVATQVDDLLSEIR--IRAAK  445

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R ++ T T++ A  L  +L++               G       + +   ++ E+I+ 
Sbjct  446  NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERVEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  +    A 
Sbjct  492  LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLEGKAI  551

Query  482  VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA  538
            +  +  +  + + +         +Q       +       KI D+ +     +     
Sbjct  552  LYGDKITDSMAKAIGETERRREKQQQFNLEHGIVPKGLNKKIGDILKIGQPTQGRNKK  609


>sp|A8GBD1|UVRB_SERP5 UvrABC system protein B OS=Serratia proteamaculans 
(strain 568) OX=399741 GN=uvrB PE=3 SV=1
Length=670

 Score = 84.5 bits (207),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 88/227 (39%), Gaps = 22/227 (10%)

Query  307  QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSN  366
            Q  Y      K ++  +   ++         L  L    P   +++ L   ++++ + + 
Sbjct  388  QTIYVSATPGKYELEKSGDDIIDQVVRPTGLLDPLIEVRPVTTQVDDLLSEIRKRVAINE  447

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
              R ++ T T++ A  L  +L++               G       + +   ++ E+I+ 
Sbjct  448  --RVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERVEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  + +  A 
Sbjct  492  LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAI  551

Query  482  VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQ  527
            +  +  +  + R +         +QA      +       K+ D+ Q
Sbjct  552  LYGDRITDSMARAISETERRRAKQQAFNEENGIVPQGLNKKVSDVLQ  598


>sp|Q2JN87|UVRB_SYNJB UvrABC system protein B OS=Synechococcus 
sp. (strain JA-2-3B'a(2-13)) OX=321332 GN=uvrB PE=3 SV=1
Length=695

 Score = 84.5 bits (207),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 31/126 (25%), Positives = 59/126 (47%), Gaps = 19/126 (15%)

Query  365  SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI  424
              + R I+ T T++ A  L  +LQ++       IR + L         + +T  ++ E++
Sbjct  468  GPAERVIVTTLTKRMAEDLTEYLQER------GIRVRYL--------HSEITSIERIEIL  513

Query  425  QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVY  479
            Q F++G  ++LV  ++  EGLD+P  ++V          L  E S++Q  GRA  +    
Sbjct  514  QDFREGAFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQMIGRAARNVRGM  573

Query  480  AFVATE  485
              +  +
Sbjct  574  VVMYAD  579


>sp|Q9VD51|DDX18_DROME Probable ATP-dependent RNA helicase pitchoune 
OS=Drosophila melanogaster OX=7227 GN=pit PE=2 SV=2
Length=680

 Score = 84.5 bits (207),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 76/232 (33%), Gaps = 44/232 (19%)

Query  283  HLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDR--------  334
            HL+   D L  +     +D +  + +    E + +   L  +RR   LF           
Sbjct  323  HLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLPKRRQTMLFSATQTARIEAL  382

Query  335  -----KNELAHLATHGPEN--------------PKLEMLEKILQRQFSSSNSPRGIIFTR  375
                 K+E  ++  H  ++              P  + L  +L      +   + ++F  
Sbjct  383  SKLALKSEPIYVGVHDNQDTATVDGLEQGYIVCPSEKRLL-VLFTFLKKNRKKKVMVFFS  441

Query  376  TRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLL  435
            +  S           +    +D+    + G           Q  +     +F +    +L
Sbjct  442  SCMSVK------YHHELFNYIDLPVTSIHG--------KQKQTKRTTTFFQFCNAESGIL  487

Query  436  VATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA--RADQSVYAFVATE  485
            + T VA  GLDIP  + +V+Y    +    +   GR    +  S +A +   
Sbjct  488  LCTDVAARGLDIPQVDWIVQYDPPDDPREYIHRVGRTARGSGTSGHALLLMR  539


 Score = 52.9 bits (125),  Expect = 8e-06, Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 53/137 (39%), Gaps = 9/137 (7%)

Query  2    ELRSYQWEVIMPALEGKNIIIWLPTGAGKT---RAAAYVAKRHLETVD--GAKVVVLVNR  56
            E+   Q + + P L+G++++    TG+GKT      A      L  +   G  V+++   
Sbjct  209  EMTEIQSKSLTPLLKGRDLVGAAQTGSGKTLAFLIPAVELINKLRFMPRNGTGVIIISPT  268

Query  57   VHLVTQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE  115
              L  Q     + ++         + G    +     L +  ++L+ T   L   L +  
Sbjct  269  RELSMQTFGVLKELMAHHHHTYGLVMGGSNRQVESEKLGKGINILVATPGRLLDHLQNSP  328

Query  116  EEEHVELTVFSLIVVDE  132
            +  +  L     +++DE
Sbjct  329  DFLYKNLQ---CLIIDE  342


>sp|Q65ST2|UVRB_MANSM UvrABC system protein B OS=Mannheimia succiniciproducens 
(strain KCTC 0769BP / MBEL55E) OX=221988 GN=uvrB 
PE=3 SV=1
Length=678

 Score = 84.1 bits (206),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 36/167 (22%), Positives = 71/167 (43%), Gaps = 24/167 (14%)

Query  346  PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
            P + +++ L    ++   +  + R ++ T T++ A  L  +L +        IR + L  
Sbjct  432  PVSIQVDDLLSEARQ--RADRNERVLVTTLTKRMAEDLTDYLDEH------GIRVRYL--  481

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLT  460
                   + +   ++ E+I+  + G  ++LV  ++  EGLDIP  ++V          L 
Sbjct  482  ------HSDIDTVERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLR  535

Query  461  NEISMVQARGRARADQSVYAFVATE---GSRELKRELINEALETLME  504
            +E S++Q  GRA  +    A +  +    S E      N   E  M+
Sbjct  536  SERSLIQTIGRAARNLKGKAILYADRITNSMEKAITETNRRREKQMK  582


>sp|Q6FKS8|SPB4_CANGA ATP-dependent rRNA helicase SPB4 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=SPB4 PE=3 SV=1
Length=617

 Score = 84.1 bits (206),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 49/275 (18%), Positives = 101/275 (37%), Gaps = 30/275 (11%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSA---HSLLLWLQQQQGLQTVDIRAQLLIGA  406
            KL+ L  I+          + I++  T  S    +  L +LQQ       D++   + G 
Sbjct  249  KLQNLIHIMNNI----RFKKCIVYFSTCVSVTFFYQYLKYLQQTDKTLREDLQVISIHG-  303

Query  407  GNSSQSTHMTQRDQQEVIQKFQDGTLN-LLVATSVAEEGLDIPHCNVVVRYGLLTNEISM  465
                    +T + +++ +  F +   + +L+ T VA  G+DIP  ++V++    T+    
Sbjct  304  -------KLTTQSRRKALSTFTESLSDCILLTTDVAARGIDIPDVDLVLQIDPPTDADIF  356

Query  466  VQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD  524
            +   GR  RA++   A V     RE       E     +E+      K+         + 
Sbjct  357  LHRCGRTGRANKIGRAIVFLNEGREEDYIPFMEVKNVDIEETDINKNKISNDNNDEFYQR  416

Query  525  LQQAALTKRAAQAAQRENQRQQFPVEHVQLLCINCMVAVGHGSDLRKVEGTHHVNVNPNF  584
              +  L+ RA            + +     +      +    + + +++   +V++   +
Sbjct  417  FTKWLLSDRA-----------NYDLSVKSYVAFIRYYSKHSATSIFRLQSLDYVSLGKMY  465

Query  585  SNYYNVSRDPVVINKVFKDWKPGGVISCRNCGEVW  619
               + + R P  I K  +D +  G       GE W
Sbjct  466  -GLFRLPRMPE-ITKYLQDKEKSGETVVGYYGEGW  498


 Score = 44.0 bits (102),  Expect = 0.004, Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 49/139 (35%), Gaps = 24/139 (17%)

Query  16   EGKNIIIWLPTGAGKTRAAAY---VAKRHLETVDGAKV-------VVLVNRVHLVTQHGE  65
            + K++++   TG+GKT  A     + K   E ++ +K        ++L     L  Q   
Sbjct  43   KNKDVVVESVTGSGKT-IAFVIPILEKIISEGINNSKFKKGHFYSLILAPTRELSMQIQN  101

Query  66   EFRRML--------DGRWTVTTLSGDMGPRAGFGHLARCH-DLLICTAELLQMALTSPEE  116
                 L          R  +   + +   R     L      +LI T   +   L SP  
Sbjct  102  VVSSFLEHYPEDQYPIRSQLVVGTNEKSVRDDVNTLLDERPQILIGTPGRVLDFLQSPS-  160

Query  117  EEHVELTVFSLIVVDECHH  135
               V+ +   ++V+DE   
Sbjct  161  ---VKTSSCGMVVLDEADR  176


>sp|Q8G5L9|UVRB_BIFLO UvrABC system protein B OS=Bifidobacterium 
longum (strain NCC 2705) OX=206672 GN=uvrB PE=3 SV=1
Length=703

 Score = 84.1 bits (206),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 64/146 (44%), Gaps = 19/146 (13%)

Query  365  SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI  424
            + + R ++ T T++ A  L  +L ++              G       + +    + E++
Sbjct  449  AKNERALVTTLTKKMAEDLTDYLLER--------------GIKVEYLHSDVDTLRRVELL  494

Query  425  QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVY  479
            +  ++G ++++V  ++  EGLD+P  ++V          L +  S++Q  GRA  + S  
Sbjct  495  RMLREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTIGRAARNVSGT  554

Query  480  AFVATEGSRELKRELINEALETLMEQ  505
              +  + + E  R+ I+E      +Q
Sbjct  555  VIMYADETTEAMRQAIDETDRRRAKQ  580


>sp|Q5KVB5|UVRB_GEOKA UvrABC system protein B OS=Geobacillus kaustophilus 
(strain HTA426) OX=235909 GN=uvrB PE=3 SV=1
Length=658

 Score = 84.1 bits (206),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 30/178 (17%), Positives = 74/178 (42%), Gaps = 20/178 (11%)

Query  365  SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI  424
              + R ++ T T++ A  L  +L++               G   +   + +   ++ E+I
Sbjct  443  ERNERTLVTTLTKKMAEDLTDYLKEA--------------GIKVAYLHSEIKTLERIEII  488

Query  425  QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVY  479
            +  + G  ++LV  ++  EGLDIP  ++V          L +E S++Q  GRA  + + +
Sbjct  489  RDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNANGH  548

Query  480  AFVATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQ  536
              +  +  ++ ++  +        +++       +     + +IRD+ +A       +
Sbjct  549  VIMYADTITKSMEVAIQETKRRRAIQEEYNRKHGIVPRTVKKEIRDVIRATYAAEETE  606


>sp|P56981|UVRB_BACCA UvrABC system protein B OS=Bacillus caldotenax 
OX=1395 GN=uvrB PE=1 SV=2
Length=658

 Score = 84.1 bits (206),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 30/178 (17%), Positives = 74/178 (42%), Gaps = 20/178 (11%)

Query  365  SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI  424
              + R ++ T T++ A  L  +L++               G   +   + +   ++ E+I
Sbjct  443  ERNERTLVTTLTKKMAEDLTDYLKEA--------------GIKVAYLHSEIKTLERIEII  488

Query  425  QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVY  479
            +  + G  ++LV  ++  EGLDIP  ++V          L +E S++Q  GRA  + + +
Sbjct  489  RDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNANGH  548

Query  480  AFVATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQ  536
              +  +  ++ ++  +        +++       +     + +IRD+ +A       +
Sbjct  549  VIMYADTITKSMEIAIQETKRRRAIQEEYNRKHGIVPRTVKKEIRDVIRATYAAEETE  606


>sp|A1CIQ5|HAS1_ASPCL ATP-dependent RNA helicase has1 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=has1 PE=3 SV=1
Length=625

 Score = 84.1 bits (206),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 49/318 (15%), Positives = 101/318 (32%), Gaps = 47/318 (15%)

Query  253  FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHR  312
             G      +  KL +   L      R+   HL+     +  +     +D    + +    
Sbjct  250  IGGANRRAEAEKLMKGVNLLIATPGRLLD-HLQNTQGFVFKNLKTLVIDEADRILEVGFE  308

Query  313  EHVTK-TQILCAERRLLALFDD----RKNELAHLAT----------HGPENPKLEMLEK-  356
            + + +  +IL +E R   LF      +  +LA ++           H  E+  +E LE+ 
Sbjct  309  DEMRQIVKILPSEERQTMLFSATQTTKVEDLARISLRPGPLYINVDHRKEHSTVEGLEQG  368

Query  357  -----------ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
                       +L      +   + I+F  +              + L  +D+    L G
Sbjct  369  YVICEADKRFLLLFSFLKRNLKKKIIVFFSSCNCVK------YHAELLNYIDLPVLELHG  422

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM  465
                       Q+ +     +F +     L+ T VA  GLDIP  + ++++    +    
Sbjct  423  --------KQKQQKRTNTFFEFCNAKQGTLICTDVAARGLDIPAVDWIIQFDPPDDPRDY  474

Query  466  VQARGRARAD---QSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKI  522
            +   GR       +               + L    +  +  +  A+     Q++ +  I
Sbjct  475  IHRVGRTARGANAKGRSLMFLQPSEVGFLKHLKEARVPVVEFEFPASKIVNVQSQLEKLI  534

Query  523  RDLQQAALTKRAAQAAQR  540
               Q   L K A +  + 
Sbjct  535  G--QNYYLNKSAKEGYRS  550


 Score = 51.0 bits (120),  Expect = 3e-05, Method: Composition-based stats.
 Identities = 32/135 (24%), Positives = 45/135 (33%), Gaps = 9/135 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT---RAAAYVAKRHLETVDGAKVVVLV--NRVHLVT  61
            Q   I P L G++++    TG+GKT      A      L         VLV      L  
Sbjct  170  QRRTIPPLLAGRDVLGAAKTGSGKTLSFLIPAVEMLSALRFKPRNGTGVLVVSPTRELAL  229

Query  62   QHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
            Q     R +          + G    RA    L +  +LLI T   L   L + +     
Sbjct  230  QIFGVARELCQHHSQTYGIVIGGANRRAEAEKLMKGVNLLIATPGRLLDHLQNTQGFVFK  289

Query  121  ELTVFSLIVVDECHH  135
             L     +V+DE   
Sbjct  290  NLKT---LVIDEADR  301


>sp|Q65ED8|UVRB_BACLD UvrABC system protein B OS=Bacillus licheniformis 
(strain ATCC 14580 / DSM 13 / JCM 2505 / CCUG 7422 
/ NBRC 12200 / NCIMB 9375 / NCTC 10341 / NRRL NRS-1264 / Gibson 
46) OX=279010 GN=uvrB PE=3 SV=1
Length=661

 Score = 84.1 bits (206),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 49/288 (17%), Positives = 102/288 (35%), Gaps = 26/288 (9%)

Query  289  DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPEN  348
             + L +  +R  +    + +  +         L     ++         L  +    P  
Sbjct  369  PSALDNRPLRFEEFEKHIHNIVYVSATPGPYELEHTPEMVEQIIRPTGLLDPIIEVRPIE  428

Query  349  PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN  408
             +++ L   +Q++   +   R ++ T T++ +  L  +L++              IG   
Sbjct  429  GQIDDLIGEIQQRIERNE--RVLVTTLTKKMSEDLTDYLKE--------------IGIKV  472

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEI  463
            +   + +   ++ E+I+  + G  ++LV  ++  EGLDIP  ++V          L +E 
Sbjct  473  TYLHSEIKTLERIEIIRDLRLGKHDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSER  532

Query  464  SMVQARGRARADQSVYAFVATEGSRELKRELINE-ALETLMEQAVAAVQKMDQAEYQAKI  522
            S++Q  GRA  +      +  +         INE       ++A      +       KI
Sbjct  533  SLIQTIGRAARNAEGRVIMYADKITNSMEIAINETKRRREQQEAYNEKHGITPKTINKKI  592

Query  523  RDLQQAALTKRAAQAAQRENQRQQFPVEHVQLLCINCMVAVGHGSDLR  570
            RD     +    A   Q E Q ++ P            V     SD++
Sbjct  593  RD----VIRATHAAEDQEEYQVKEEPKLSKMTKKEREKVIAQMESDMK  636


>sp|Q5E6B5|UVRB_ALIF1 UvrABC system protein B OS=Aliivibrio fischeri 
(strain ATCC 700601 / ES114) OX=312309 GN=uvrB PE=3 SV=1
Length=676

 Score = 84.1 bits (206),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 37/206 (18%), Positives = 78/206 (38%), Gaps = 21/206 (10%)

Query  307  QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSN  366
            Q  Y      K +I  ++  +          L  +    P   +++ L   ++    + N
Sbjct  389  QTIYVSATPGKYEIEKSDGEIAEQVVRPTGLLDPVIEVRPVATQVDDLLSEIR--IRTKN  446

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R ++ T T++ A  L  +L +               G       + +   ++ E+I+ 
Sbjct  447  NERVLVTTLTKRMAEDLTEYLDE--------------HGVKVRYLHSDIDTVERVEIIRD  492

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  +    A 
Sbjct  493  LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLEGKAI  552

Query  482  VATEGSRELKRELINEALETLMEQAV  507
            +  +       + I E      +Q +
Sbjct  553  LYADKITGSMEKAIGETERRREKQQL  578


>sp|Q8ENJ5|UVRB_OCEIH UvrABC system protein B OS=Oceanobacillus 
iheyensis (strain DSM 14371 / CIP 107618 / JCM 11309 / KCTC 
3954 / HTE831) OX=221109 GN=uvrB PE=3 SV=1
Length=660

 Score = 84.1 bits (206),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 34/194 (18%), Positives = 75/194 (39%), Gaps = 22/194 (11%)

Query  365  SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI  424
              + R +I T T++ +  L  +L++              IG   +   + +   ++ EVI
Sbjct  443  EKNERVLITTLTKKMSEDLTDYLKE--------------IGMKVAYLHSEIKTLERIEVI  488

Query  425  QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVY  479
            +  + G  ++LV  ++  EGLDIP  ++V          L +E S++Q  GRA  +++  
Sbjct  489  RDLRVGKFDVLVGINLLREGLDIPEVSLVSILDADKEGFLRSERSLIQTMGRAARNENGK  548

Query  480  AFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQ  539
              +  +   +  ++ I+   ET   + +              IR   +  +    A    
Sbjct  549  VIMYADKMTDSMKKAID---ETNRRRTIQTEYNEQHGITPKTIRKEVRDVIKATTAAEET  605

Query  540  RENQRQQFPVEHVQ  553
               + +   +  + 
Sbjct  606  ESYEPKTKQINKMT  619


>sp|Q6FML5|PRP5_CANGA Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Candida glabrata (strain ATCC 2001 / BCRC 20586 
/ JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=PRP5 
PE=3 SV=1
Length=816

 Score = 84.1 bits (206),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 29/187 (16%), Positives = 64/187 (34%), Gaps = 15/187 (8%)

Query  339  AHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI  398
                    E+ K + L  +L+   S +   + IIF  ++Q    +   L           
Sbjct  476  QKFTICSDESDKFKELLSLLKVFNSETVDEKTIIFVSSQQICDIIEKRLTDYSEKLY---  532

Query  399  RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL  458
                       S        ++++ ++ F+  + ++L+ T V   GL++P  + V+ Y  
Sbjct  533  -----------SIHAGRPYNERRQNLELFKKTSNSILLCTEVMSRGLNVPEVSRVILYNS  581

Query  459  LTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAE  517
                   V + GR AR  +   +      +      ++N+A+           +  +  +
Sbjct  582  AKTFAQYVHSTGRTARGTREGTSISLLLPNELSSAYILNKAMRDKDFSECPVKEVKNLKQ  641

Query  518  YQAKIRD  524
               K  D
Sbjct  642  MAQKFED  648


 Score = 51.0 bits (120),  Expect = 3e-05, Method: Composition-based stats.
 Identities = 27/137 (20%), Positives = 49/137 (36%), Gaps = 9/137 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK-------VVVLVNRVHL  59
            Q + I   + G+++I    TG+GKT +      RH++     +        V+      L
Sbjct  279  QTQTIPAIMSGRDVIGISKTGSGKTISYLLPMIRHVKAQKKLRNGETGPIAVIFAPTREL  338

Query  60   VTQHGEEFRR-MLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEE  118
              Q  EE ++ + D   +    +G    +     L    ++ I T       L+      
Sbjct  339  AVQINEEVQKLISDLDISSICCTGGSDLKKQIDKLKTGVEIAIATPGRFIDLLSLNGGNL  398

Query  119  HVELTVFSLIVVDECHH  135
               L   S +V+DE   
Sbjct  399  VSTL-RISFVVMDEADR  414


>sp|P20448|DBP4_YEAST ATP-dependent RNA helicase HCA4 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=HCA4 
PE=1 SV=2
Length=770

 Score = 84.1 bits (206),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 30/171 (18%), Positives = 54/171 (32%), Gaps = 19/171 (11%)

Query  333  DRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQG  392
                 L       P   KL++L   ++         + I+F  + +  H +    ++ Q 
Sbjct  261  STPETLQQFYIEVPLADKLDILFSFIKSHLK----CKMIVFLSSSKQVHFVYETFRKMQP  316

Query  393  LQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNV  452
                        G           QR + E + KF       L AT V   G+D P  + 
Sbjct  317  ------------GISLMHLHGRQKQRARTETLDKFNRAQQVCLFATDVVARGIDFPAVDW  364

Query  453  VVRYGLLTNEISMVQARGR-ARADQSVY--AFVATEGSRELKRELINEALE  500
            VV+     +  + +   GR AR  +       +  +      + L    +E
Sbjct  365  VVQVDCPEDVDTYIHRVGRCARYGKKGKSLIMLTPQEQEAFLKRLNARKIE  415


 Score = 57.9 bits (138),  Expect = 2e-07, Method: Composition-based stats.
 Identities = 53/315 (17%), Positives = 100/315 (32%), Gaps = 35/315 (11%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAY------VAKRHLETVDGAKVVVLVNRVHLV  60
            Q + I  +L+G +++    TG+GKT  A        + +      DG   +++     L 
Sbjct  68   QADSIPVSLQGHDVLAAAKTGSGKTL-AFLVPVIEKLYREKWTEFDGLGALIISPTRELA  126

Query  61   TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
             Q  E   ++         L                 ++LI T   +   L        +
Sbjct  127  MQIYEVLTKIGSHTSFSAGLVIGGKDVKFELERISRINILIGTPGRILQHLDQAVG---L  183

Query  121  ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG  180
              +   ++V+DE          ++   + L+  +    P  Q L  +A+     A     
Sbjct  184  NTSNLQMLVLDEADRCL-----DMGFKKTLDAIVSTLSPSRQTLLFSATQSQSVADL---  235

Query  181  AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI  240
                     A L      +           +++      L     + P  D L  L   I
Sbjct  236  ---------ARLSLTDYKTVGTHDVMDGSVNKEASTPETLQQFYIEVPLADKLDILFSFI  286

Query  241  HDHLEMPELSRKFGTQMYE---QQVVKLSEAAA---LAGLQEQRVYALHLRRYNDALLIH  294
              HL+   +     ++      +   K+    +   L G Q+QR     L ++N A  + 
Sbjct  287  KSHLKCKMIVFLSSSKQVHFVYETFRKMQPGISLMHLHGRQKQRARTETLDKFNRAQQV-  345

Query  295  DTVRAVDALAALQDF  309
              + A D +A   DF
Sbjct  346  -CLFATDVVARGIDF  359


>sp|Q9UHI6|DDX20_HUMAN Probable ATP-dependent RNA helicase DDX20 
OS=Homo sapiens OX=9606 GN=DDX20 PE=1 SV=2
Length=824

 Score = 84.1 bits (206),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 51/143 (36%), Gaps = 14/143 (10%)

Query  335  KNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQ  394
            K     + ++   +   E   + LQ  FS     + ++F+     A  L   L  +    
Sbjct  277  KQYYKVVNSYPLAHKVFEEKTQHLQELFSRIPFNQALVFSNLHSRAQHLADILSSK----  332

Query  395  TVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV  454
                      G      S +M Q  + + + K +     +L++T +   G+D    N+VV
Sbjct  333  ----------GFPAECISGNMNQNQRLDAMAKLKHFHCRVLISTDLTSRGIDAEKVNLVV  382

Query  455  RYGLLTNEISMVQARGRARADQS  477
               +  +  + +   GRA    +
Sbjct  383  NLDVPLDWETYMHRIGRAGRFGT  405


 Score = 43.6 bits (101),  Expect = 0.007, Method: Composition-based stats.
 Identities = 17/129 (13%), Positives = 46/129 (36%), Gaps = 6/129 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVD-GAKVVVLVNRVHLVTQHGE  65
            Q + I     G ++I+   +G GKT   + +A   L   +   ++++L     +  Q   
Sbjct  89   QLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHS  148

Query  66   EFRRMLDGRWTVT-TLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
                +      +   +     P +      +   + + +   ++  +    E +++    
Sbjct  149  VITAIGIKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLI----ELDYLNPGS  204

Query  125  FSLIVVDEC  133
              L ++DE 
Sbjct  205  IRLFILDEA  213


>sp|Q1EA54|HAS1_COCIM ATP-dependent RNA helicase HAS1 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=HAS1 PE=3 SV=1
Length=604

 Score = 83.7 bits (205),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 88/260 (34%), Gaps = 44/260 (17%)

Query  253  FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHR  312
             G      +  KL++   L      R+   HL+  +  +  +     +D    + +    
Sbjct  231  IGGANRRAEAEKLTKGVNLLIATPGRLLD-HLQNTDGFVFKNLKALVIDEADRILEVGFE  289

Query  313  EHVTK-TQILCAERRLLALFDD----RKNELAHLAT----------HGPENPKLEMLEK-  356
            + + +  +IL +E R   LF      +  +LA ++           H  E+  +E LE+ 
Sbjct  290  DEMRQIVKILPSEDRQTMLFSATQTTKVEDLARISLRPGPLYINVDHRKEHSTVEGLEQG  349

Query  357  -----------ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
                       +L      +   + I+F  +              + L  +D+    L G
Sbjct  350  YVICDSDKRFLLLFSFLKRNLKKKIIVFFSSCNCVK------YHAELLNYIDLPVLDLHG  403

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM  465
                       Q+ +     +F +     L+ T VA  GLDIP  + ++++    +    
Sbjct  404  --------KQKQQKRTNTFFEFCNAKQGTLICTDVAARGLDIPAVDWIIQFDPPDDPRDY  455

Query  466  VQARGRA--RADQSVYAFVA  483
            +   GR    A+    + + 
Sbjct  456  IHRVGRTARGANGKGRSLMF  475


 Score = 51.3 bits (121),  Expect = 2e-05, Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 45/127 (35%), Gaps = 9/127 (7%)

Query  15   LEGKNIIIWLPTGAGKTR---AAAYVAKRHLETVD--GAKVVVLVNRVHLVTQHGEEFRR  69
            + G++++    TG+GKT      A      L      G  V+V+     L  Q     R 
Sbjct  159  MAGRDVLGAAKTGSGKTLSFLIPAVEMLSALRFKPRNGTGVIVVSPTRELALQIFGVARE  218

Query  70   MLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLI  128
            ++         + G    RA    L +  +LLI T   L   L + +      L     +
Sbjct  219  LMAHHSQTYGIVIGGANRRAEAEKLTKGVNLLIATPGRLLDHLQNTDGFVFKNLKA---L  275

Query  129  VVDECHH  135
            V+DE   
Sbjct  276  VIDEADR  282


>sp|Q0UG00|MS116_PHANO ATP-dependent RNA helicase MSS116, mitochondrial 
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 
/ FGSC 10173) OX=321614 GN=MSS116 PE=3 SV=1
Length=550

 Score = 83.3 bits (204),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 28/128 (22%), Positives = 48/128 (38%), Gaps = 13/128 (10%)

Query  357  ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT  416
            I +         + I+F  T      L    +          R   L         + M+
Sbjct  321  IQEEHKQDPTDFKAIVFGTTANGVGLLYDLYKH----ALPQFRVFEL--------HSRMS  368

Query  417  QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARAD  475
            Q  +     +F++ T  +L A+ V   G+D P+  +VV+ GL ++    V   GR ARA 
Sbjct  369  QPMRTRTTAQFKEATSGILFASDVVGRGMDFPNVGLVVQLGLPSSTEQYVHRVGRTARAG  428

Query  476  QSVYAFVA  483
            +   A + 
Sbjct  429  KDGRAVLV  436


>sp|A7TJ71|DBP4_VANPO ATP-dependent RNA helicase DBP4 OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=DBP4 PE=3 SV=1
Length=768

 Score = 84.1 bits (206),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 53/154 (34%), Gaps = 19/154 (12%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            KL+ML   ++         + I+F  + +  H +    ++ Q             G    
Sbjct  280  KLDMLYSFIKSHLK----SKMIVFLSSSKQVHFVYETFRKMQP------------GISLM  323

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                   Q+ + E + KF       L AT V   G+D P  + VV+     +  + +   
Sbjct  324  HLHGRQKQKARTETLDKFNRAQHVCLFATDVVARGIDFPAIDWVVQVDCPEDVDTYIHRV  383

Query  470  GR-ARADQSVY--AFVATEGSRELKRELINEALE  500
            GR AR  +       +  +      + L +  +E
Sbjct  384  GRCARYGKQGKSMIMLTPQEEEGFLKRLASRKIE  417


 Score = 50.2 bits (118),  Expect = 6e-05, Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 47/141 (33%), Gaps = 8/141 (6%)

Query  1    MELRSYQWEVIMPALEGKNIIIWLPTGAGKT---RAAAY--VAKRHLETVDGAKVVVLVN  55
            ++L   Q + I  +L+G +I+    TG+GKT          + +      DG   +++  
Sbjct  62   LKLTDIQRDSIPMSLKGYDILGAAKTGSGKTLAFLIPVLEKLYRERWTEFDGLGALIISP  121

Query  56   RVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE  115
               L  Q  E   ++         L                 ++LI T   +   +    
Sbjct  122  TRELAMQIYEVLLKIGTSTSFSAGLVIGGKDVKFEMERISKINILIGTPGRILQHMDQAI  181

Query  116  EEEHVELTVFSLIVVDECHHT  136
                +  +   ++V+DE    
Sbjct  182  G---LNTSNLQMLVLDEADRC  199


>sp|Q32I48|UVRB_SHIDS UvrABC system protein B OS=Shigella dysenteriae 
serotype 1 (strain Sd197) OX=300267 GN=uvrB PE=3 SV=1
Length=673

 Score = 83.7 bits (205),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 74/194 (38%), Gaps = 20/194 (10%)

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R ++ T T++ A  L  +L++               G       + +   ++ E+I+ 
Sbjct  446  NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  + +  A 
Sbjct  492  LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI  551

Query  482  VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR  540
            +  +  +  + + +         +Q       +       K+ D+          +A  R
Sbjct  552  LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR  611

Query  541  ENQRQQFPVEHVQL  554
               R     ++V +
Sbjct  612  GKSRPIVEPDNVPM  625


>sp|Q0TJR9|UVRB_ECOL5 UvrABC system protein B OS=Escherichia coli 
O6:K15:H31 (strain 536 / UPEC) OX=362663 GN=uvrB PE=3 SV=1
Length=673

 Score = 83.7 bits (205),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 74/194 (38%), Gaps = 20/194 (10%)

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R ++ T T++ A  L  +L++               G       + +   ++ E+I+ 
Sbjct  446  NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  + +  A 
Sbjct  492  LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI  551

Query  482  VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR  540
            +  +  +  + + +         +Q       +       K+ D+          +A  R
Sbjct  552  LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR  611

Query  541  ENQRQQFPVEHVQL  554
               R     ++V +
Sbjct  612  GKSRPIVEPDNVPM  625


>sp|B7MQN2|UVRB_ECO81 UvrABC system protein B OS=Escherichia coli 
O81 (strain ED1a) OX=585397 GN=uvrB PE=3 SV=1
Length=673

 Score = 83.7 bits (205),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 74/194 (38%), Gaps = 20/194 (10%)

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R ++ T T++ A  L  +L++               G       + +   ++ E+I+ 
Sbjct  446  NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  + +  A 
Sbjct  492  LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI  551

Query  482  VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR  540
            +  +  +  + + +         +Q       +       K+ D+          +A  R
Sbjct  552  LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR  611

Query  541  ENQRQQFPVEHVQL  554
               R     ++V +
Sbjct  612  GKSRPIVEPDNVPM  625


>sp|Q8FJP8|UVRB_ECOL6 UvrABC system protein B OS=Escherichia coli 
O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=uvrB 
PE=3 SV=3
Length=673

 Score = 83.7 bits (205),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 74/194 (38%), Gaps = 20/194 (10%)

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R ++ T T++ A  L  +L++               G       + +   ++ E+I+ 
Sbjct  446  NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  + +  A 
Sbjct  492  LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI  551

Query  482  VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR  540
            +  +  +  + + +         +Q       +       K+ D+          +A  R
Sbjct  552  LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR  611

Query  541  ENQRQQFPVEHVQL  554
               R     ++V +
Sbjct  612  GKSRPIVEPDNVPM  625


>sp|B7NNK9|UVRB_ECO7I UvrABC system protein B OS=Escherichia coli 
O7:K1 (strain IAI39 / ExPEC) OX=585057 GN=uvrB PE=3 SV=1
Length=673

 Score = 83.7 bits (205),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 74/194 (38%), Gaps = 20/194 (10%)

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R ++ T T++ A  L  +L++               G       + +   ++ E+I+ 
Sbjct  446  NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  + +  A 
Sbjct  492  LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI  551

Query  482  VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR  540
            +  +  +  + + +         +Q       +       K+ D+          +A  R
Sbjct  552  LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR  611

Query  541  ENQRQQFPVEHVQL  554
               R     ++V +
Sbjct  612  GKSRPIVEPDNVPM  625


>sp|Q3Z405|UVRB_SHISS UvrABC system protein B OS=Shigella sonnei 
(strain Ss046) OX=300269 GN=uvrB PE=3 SV=1
Length=673

 Score = 83.7 bits (205),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 74/194 (38%), Gaps = 20/194 (10%)

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R ++ T T++ A  L  +L++               G       + +   ++ E+I+ 
Sbjct  446  NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  + +  A 
Sbjct  492  LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI  551

Query  482  VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR  540
            +  +  +  + + +         +Q       +       K+ D+          +A  R
Sbjct  552  LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR  611

Query  541  ENQRQQFPVEHVQL  554
               R     ++V +
Sbjct  612  GKSRPIVEPDNVPM  625


>sp|Q324B3|UVRB_SHIBS UvrABC system protein B OS=Shigella boydii 
serotype 4 (strain Sb227) OX=300268 GN=uvrB PE=3 SV=1
Length=673

 Score = 83.7 bits (205),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 74/194 (38%), Gaps = 20/194 (10%)

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R ++ T T++ A  L  +L++               G       + +   ++ E+I+ 
Sbjct  446  NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  + +  A 
Sbjct  492  LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI  551

Query  482  VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR  540
            +  +  +  + + +         +Q       +       K+ D+          +A  R
Sbjct  552  LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR  611

Query  541  ENQRQQFPVEHVQL  554
               R     ++V +
Sbjct  612  GKSRPIVEPDNVPM  625


>sp|B2TVF1|UVRB_SHIB3 UvrABC system protein B OS=Shigella boydii 
serotype 18 (strain CDC 3083-94 / BS512) OX=344609 GN=uvrB 
PE=3 SV=1
Length=673

 Score = 83.7 bits (205),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 74/194 (38%), Gaps = 20/194 (10%)

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R ++ T T++ A  L  +L++               G       + +   ++ E+I+ 
Sbjct  446  NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  + +  A 
Sbjct  492  LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI  551

Query  482  VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR  540
            +  +  +  + + +         +Q       +       K+ D+          +A  R
Sbjct  552  LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR  611

Query  541  ENQRQQFPVEHVQL  554
               R     ++V +
Sbjct  612  GKSRPIVEPDNVPM  625


>sp|Q1REF1|UVRB_ECOUT UvrABC system protein B OS=Escherichia coli 
(strain UTI89 / UPEC) OX=364106 GN=uvrB PE=3 SV=1
Length=673

 Score = 83.7 bits (205),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 74/194 (38%), Gaps = 20/194 (10%)

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R ++ T T++ A  L  +L++               G       + +   ++ E+I+ 
Sbjct  446  NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  + +  A 
Sbjct  492  LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI  551

Query  482  VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR  540
            +  +  +  + + +         +Q       +       K+ D+          +A  R
Sbjct  552  LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR  611

Query  541  ENQRQQFPVEHVQL  554
               R     ++V +
Sbjct  612  GKSRPIVEPDNVPM  625


>sp|B1LM70|UVRB_ECOSM UvrABC system protein B OS=Escherichia coli 
(strain SMS-3-5 / SECEC) OX=439855 GN=uvrB PE=3 SV=1
Length=673

 Score = 83.7 bits (205),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 74/194 (38%), Gaps = 20/194 (10%)

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R ++ T T++ A  L  +L++               G       + +   ++ E+I+ 
Sbjct  446  NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  + +  A 
Sbjct  492  LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI  551

Query  482  VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR  540
            +  +  +  + + +         +Q       +       K+ D+          +A  R
Sbjct  552  LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR  611

Query  541  ENQRQQFPVEHVQL  554
               R     ++V +
Sbjct  612  GKSRPIVEPDNVPM  625


>sp|B6I7T4|UVRB_ECOSE UvrABC system protein B OS=Escherichia coli 
(strain SE11) OX=409438 GN=uvrB PE=3 SV=1
Length=673

 Score = 83.7 bits (205),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 74/194 (38%), Gaps = 20/194 (10%)

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R ++ T T++ A  L  +L++               G       + +   ++ E+I+ 
Sbjct  446  NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  + +  A 
Sbjct  492  LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI  551

Query  482  VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR  540
            +  +  +  + + +         +Q       +       K+ D+          +A  R
Sbjct  552  LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR  611

Query  541  ENQRQQFPVEHVQL  554
               R     ++V +
Sbjct  612  GKSRPIVEPDNVPM  625


>sp|B7NA78|UVRB_ECOLU UvrABC system protein B OS=Escherichia coli 
O17:K52:H18 (strain UMN026 / ExPEC) OX=585056 GN=uvrB PE=3 
SV=1
Length=673

 Score = 83.7 bits (205),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 74/194 (38%), Gaps = 20/194 (10%)

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R ++ T T++ A  L  +L++               G       + +   ++ E+I+ 
Sbjct  446  NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  + +  A 
Sbjct  492  LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI  551

Query  482  VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR  540
            +  +  +  + + +         +Q       +       K+ D+          +A  R
Sbjct  552  LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR  611

Query  541  ENQRQQFPVEHVQL  554
               R     ++V +
Sbjct  612  GKSRPIVEPDNVPM  625


>sp|P0A8F8|UVRB_ECOLI UvrABC system protein B OS=Escherichia coli 
(strain K12) OX=83333 GN=uvrB PE=1 SV=2
Length=673

 Score = 83.7 bits (205),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 74/194 (38%), Gaps = 20/194 (10%)

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R ++ T T++ A  L  +L++               G       + +   ++ E+I+ 
Sbjct  446  NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  + +  A 
Sbjct  492  LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI  551

Query  482  VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR  540
            +  +  +  + + +         +Q       +       K+ D+          +A  R
Sbjct  552  LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR  611

Query  541  ENQRQQFPVEHVQL  554
               R     ++V +
Sbjct  612  GKSRPIVEPDNVPM  625


>sp|B1IXI9|UVRB_ECOLC UvrABC system protein B OS=Escherichia coli 
(strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / 
WDCM 00012 / Crooks) OX=481805 GN=uvrB PE=3 SV=1
Length=673

 Score = 83.7 bits (205),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 74/194 (38%), Gaps = 20/194 (10%)

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R ++ T T++ A  L  +L++               G       + +   ++ E+I+ 
Sbjct  446  NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  + +  A 
Sbjct  492  LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI  551

Query  482  VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR  540
            +  +  +  + + +         +Q       +       K+ D+          +A  R
Sbjct  552  LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR  611

Query  541  ENQRQQFPVEHVQL  554
               R     ++V +
Sbjct  612  GKSRPIVEPDNVPM  625


>sp|A1A921|UVRB_ECOK1 UvrABC system protein B OS=Escherichia coli 
O1:K1 / APEC OX=405955 GN=uvrB PE=3 SV=1
Length=673

 Score = 83.7 bits (205),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 74/194 (38%), Gaps = 20/194 (10%)

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R ++ T T++ A  L  +L++               G       + +   ++ E+I+ 
Sbjct  446  NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  + +  A 
Sbjct  492  LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI  551

Query  482  VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR  540
            +  +  +  + + +         +Q       +       K+ D+          +A  R
Sbjct  552  LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR  611

Query  541  ENQRQQFPVEHVQL  554
               R     ++V +
Sbjct  612  GKSRPIVEPDNVPM  625


>sp|A7ZY35|UVRB_ECOHS UvrABC system protein B OS=Escherichia coli 
O9:H4 (strain HS) OX=331112 GN=uvrB PE=3 SV=1
Length=673

 Score = 83.7 bits (205),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 74/194 (38%), Gaps = 20/194 (10%)

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R ++ T T++ A  L  +L++               G       + +   ++ E+I+ 
Sbjct  446  NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  + +  A 
Sbjct  492  LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI  551

Query  482  VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR  540
            +  +  +  + + +         +Q       +       K+ D+          +A  R
Sbjct  552  LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR  611

Query  541  ENQRQQFPVEHVQL  554
               R     ++V +
Sbjct  612  GKSRPIVEPDNVPM  625


>sp|B1X7A9|UVRB_ECODH UvrABC system protein B OS=Escherichia coli 
(strain K12 / DH10B) OX=316385 GN=uvrB PE=3 SV=1
Length=673

 Score = 83.7 bits (205),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 74/194 (38%), Gaps = 20/194 (10%)

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R ++ T T++ A  L  +L++               G       + +   ++ E+I+ 
Sbjct  446  NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  + +  A 
Sbjct  492  LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI  551

Query  482  VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR  540
            +  +  +  + + +         +Q       +       K+ D+          +A  R
Sbjct  552  LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR  611

Query  541  ENQRQQFPVEHVQL  554
               R     ++V +
Sbjct  612  GKSRPIVEPDNVPM  625


>sp|C4ZXV1|UVRB_ECOBW UvrABC system protein B OS=Escherichia coli 
(strain K12 / MC4100 / BW2952) OX=595496 GN=uvrB PE=3 SV=1
Length=673

 Score = 83.7 bits (205),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 74/194 (38%), Gaps = 20/194 (10%)

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R ++ T T++ A  L  +L++               G       + +   ++ E+I+ 
Sbjct  446  NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  + +  A 
Sbjct  492  LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI  551

Query  482  VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR  540
            +  +  +  + + +         +Q       +       K+ D+          +A  R
Sbjct  552  LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR  611

Query  541  ENQRQQFPVEHVQL  554
               R     ++V +
Sbjct  612  GKSRPIVEPDNVPM  625


>sp|B7M751|UVRB_ECO8A UvrABC system protein B OS=Escherichia coli 
O8 (strain IAI1) OX=585034 GN=uvrB PE=3 SV=1
Length=673

 Score = 83.7 bits (205),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 74/194 (38%), Gaps = 20/194 (10%)

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R ++ T T++ A  L  +L++               G       + +   ++ E+I+ 
Sbjct  446  NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  + +  A 
Sbjct  492  LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI  551

Query  482  VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR  540
            +  +  +  + + +         +Q       +       K+ D+          +A  R
Sbjct  552  LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR  611

Query  541  ENQRQQFPVEHVQL  554
               R     ++V +
Sbjct  612  GKSRPIVEPDNVPM  625


>sp|B5YRL8|UVRB_ECO5E UvrABC system protein B OS=Escherichia coli 
O157:H7 (strain EC4115 / EHEC) OX=444450 GN=uvrB PE=3 SV=1
Length=673

 Score = 83.7 bits (205),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 74/194 (38%), Gaps = 20/194 (10%)

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R ++ T T++ A  L  +L++               G       + +   ++ E+I+ 
Sbjct  446  NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  + +  A 
Sbjct  492  LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI  551

Query  482  VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR  540
            +  +  +  + + +         +Q       +       K+ D+          +A  R
Sbjct  552  LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR  611

Query  541  ENQRQQFPVEHVQL  554
               R     ++V +
Sbjct  612  GKSRPIVEPDNVPM  625


>sp|P0A8F9|UVRB_ECO57 UvrABC system protein B OS=Escherichia coli 
O157:H7 OX=83334 GN=uvrB PE=3 SV=2
Length=673

 Score = 83.7 bits (205),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 74/194 (38%), Gaps = 20/194 (10%)

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R ++ T T++ A  L  +L++               G       + +   ++ E+I+ 
Sbjct  446  NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  + +  A 
Sbjct  492  LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI  551

Query  482  VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR  540
            +  +  +  + + +         +Q       +       K+ D+          +A  R
Sbjct  552  LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR  611

Query  541  ENQRQQFPVEHVQL  554
               R     ++V +
Sbjct  612  GKSRPIVEPDNVPM  625


>sp|B7LC61|UVRB_ECO55 UvrABC system protein B OS=Escherichia coli 
(strain 55989 / EAEC) OX=585055 GN=uvrB PE=3 SV=1
Length=673

 Score = 83.7 bits (205),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 74/194 (38%), Gaps = 20/194 (10%)

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R ++ T T++ A  L  +L++               G       + +   ++ E+I+ 
Sbjct  446  NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  + +  A 
Sbjct  492  LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI  551

Query  482  VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR  540
            +  +  +  + + +         +Q       +       K+ D+          +A  R
Sbjct  552  LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR  611

Query  541  ENQRQQFPVEHVQL  554
               R     ++V +
Sbjct  612  GKSRPIVEPDNVPM  625


>sp|B7MGN7|UVRB_ECO45 UvrABC system protein B OS=Escherichia coli 
O45:K1 (strain S88 / ExPEC) OX=585035 GN=uvrB PE=3 SV=1
Length=673

 Score = 83.7 bits (205),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 74/194 (38%), Gaps = 20/194 (10%)

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R ++ T T++ A  L  +L++               G       + +   ++ E+I+ 
Sbjct  446  NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  + +  A 
Sbjct  492  LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI  551

Query  482  VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR  540
            +  +  +  + + +         +Q       +       K+ D+          +A  R
Sbjct  552  LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR  611

Query  541  ENQRQQFPVEHVQL  554
               R     ++V +
Sbjct  612  GKSRPIVEPDNVPM  625


>sp|B7ULX6|UVRB_ECO27 UvrABC system protein B OS=Escherichia coli 
O127:H6 (strain E2348/69 / EPEC) OX=574521 GN=uvrB PE=3 
SV=1
Length=673

 Score = 83.7 bits (205),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 74/194 (38%), Gaps = 20/194 (10%)

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R ++ T T++ A  L  +L++               G       + +   ++ E+I+ 
Sbjct  446  NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  + +  A 
Sbjct  492  LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI  551

Query  482  VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR  540
            +  +  +  + + +         +Q       +       K+ D+          +A  R
Sbjct  552  LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR  611

Query  541  ENQRQQFPVEHVQL  554
               R     ++V +
Sbjct  612  GKSRPIVEPDNVPM  625


>sp|A7ZJI8|UVRB_ECO24 UvrABC system protein B OS=Escherichia coli 
O139:H28 (strain E24377A / ETEC) OX=331111 GN=uvrB PE=3 
SV=1
Length=673

 Score = 83.7 bits (205),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 74/194 (38%), Gaps = 20/194 (10%)

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R ++ T T++ A  L  +L++               G       + +   ++ E+I+ 
Sbjct  446  NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  + +  A 
Sbjct  492  LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI  551

Query  482  VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR  540
            +  +  +  + + +         +Q       +       K+ D+          +A  R
Sbjct  552  LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR  611

Query  541  ENQRQQFPVEHVQL  554
               R     ++V +
Sbjct  612  GKSRPIVEPDNVPM  625


>sp|B7LJY3|UVRB_ESCF3 UvrABC system protein B OS=Escherichia fergusonii 
(strain ATCC 35469 / DSM 13698 / CCUG 18766 / IAM 
14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 / CDC 
0568-73) OX=585054 GN=uvrB PE=3 SV=1
Length=673

 Score = 83.7 bits (205),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 74/194 (38%), Gaps = 20/194 (10%)

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R ++ T T++ A  L  +L++               G       + +   ++ E+I+ 
Sbjct  446  NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  + +  A 
Sbjct  492  LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI  551

Query  482  VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR  540
            +  +  +  + + +         +Q       +       K+ D+          +A  R
Sbjct  552  LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR  611

Query  541  ENQRQQFPVEHVQL  554
               R     ++V +
Sbjct  612  GKSRPIVEPDNVPM  625


>sp|Q6C835|DBP7_YARLI ATP-dependent RNA helicase DBP7 OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DBP7 PE=3 
SV=1
Length=799

 Score = 84.1 bits (206),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 62/165 (38%), Gaps = 13/165 (8%)

Query  356  KILQRQFSSSNSPRGIIFTRTRQSAH----SLLLWLQQQQGLQTVDIRAQLL--IGAGNS  409
             ILQ   S   + + I+F     S       L     Q   + T      LL  +     
Sbjct  511  DILQS--SEKTNTKVIVFLSCSDSVDFHFDVLSRDGSQINKMDTAKTAPLLLDDVSTSVY  568

Query  410  SQSTHMTQRDQQEVIQKF-QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
                 ++Q+ +   +  F ++ T ++L+ T VA  GLD+P    V+ Y    +    +  
Sbjct  569  KLHGSLSQQARTATLASFAKNSTPSILLCTDVASRGLDLPKITHVIEYDPPFSIEDHLHR  628

Query  469  RGR-ARADQSVYAFVA---TEGSRELKRELINEALETLMEQAVAA  509
             GR ARA Q   A +          +++   ++ ++    + + A
Sbjct  629  VGRTARAGQDGRALLFLLPGAEEGYVEKLKQSQQMKKTTYENILA  673


 Score = 44.4 bits (103),  Expect = 0.003, Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 47/127 (37%), Gaps = 14/127 (11%)

Query  16   EGKNIIIWLPTGAGKTRAAAYVAKRHLETVD------GAKVVVLVNRVHLVTQHGEE---  66
              +++ +   TG+GKT A        + + D      G   V+L     L TQ       
Sbjct  270  RERDLFVQAQTGSGKTLAFVLPVLERIMSCDDVSRETGLFAVILTPTRELTTQIYSVLET  329

Query  67   -FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF  125
              R+          + G+   ++    + +  ++L+ T   L     + E    ++L+  
Sbjct  330  LCRKACPWIVPGIVIGGEK-KKSEKARIRKGVNILVATPGRLADHFDNTEA---LDLSQV  385

Query  126  SLIVVDE  132
              +V+DE
Sbjct  386  RWVVLDE  392


>sp|Q12WZ6|HELS_METBU ATP-dependent DNA helicase Hel308 OS=Methanococcoides 
burtonii (strain DSM 6242 / NBRC 107633 / OCM 
468 / ACE-M) OX=259564 GN=hel308 PE=3 SV=1
Length=760

 Score = 83.7 bits (205),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 42/172 (24%), Positives = 71/172 (41%), Gaps = 16/172 (9%)

Query  7    QWEVIMPAL-EGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q E I   L E KN++  +PT +GKT  A     + +   +G K + +V    L ++  E
Sbjct  28   QAEAIEMGLLEKKNLLAAIPTASGKTLLAELAMIKAIR--EGGKALYIVPLRALASEKFE  85

Query  66   EFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF  125
             F+ +      V   +GD+  RA +      +D+++ T+E     L          +   
Sbjct  86   RFKELAPFGIKVGISTGDLDSRADW---LGVNDIIVATSEKTDSLL----RNGTSWMDEI  138

Query  126  SLIVVDECHH--THKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGA  175
            + +VVDE H   +        +       KL R  P  QV+ L+A+ G    
Sbjct  139  TTVVVDEIHLLDSKNRGPTLEVT----ITKLMRLNPDVQVVALSATVGNARE  186


>sp|A1JSC3|UVRB_YERE8 UvrABC system protein B OS=Yersinia enterocolitica 
serotype O:8 / biotype 1B (strain NCTC 13174 / 8081) 
OX=393305 GN=uvrB PE=3 SV=1
Length=670

 Score = 83.7 bits (205),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 40/227 (18%), Positives = 90/227 (40%), Gaps = 22/227 (10%)

Query  307  QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSN  366
            Q  Y      K ++  +   ++         L  L    P   +++ L   ++    ++ 
Sbjct  388  QTIYVSATPGKYELEKSGGDVIDQVVRPTGLLDPLIEVRPVATQVDDLLSEIR--IRAAI  445

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R ++ T T++ A  L  +L++               GA      + +   ++ E+I+ 
Sbjct  446  NERVLVTTLTKRMAEDLTEYLEE--------------HGARVRYLHSDIDTVERVEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  + +  A 
Sbjct  492  LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAI  551

Query  482  VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQ  527
            +  +  +  +++ +         +QA    + +       KI D+ Q
Sbjct  552  LYGDRITASMEKAIGETERRRAKQQAYNEERGIIPQGLNKKIGDILQ  598


>sp|Q1EB31|DBP4_COCIM ATP-dependent RNA helicase DBP4 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=DBP4 PE=3 SV=1
Length=806

 Score = 83.7 bits (205),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 58/393 (15%), Positives = 122/393 (31%), Gaps = 59/393 (15%)

Query  165  GLTASPGTGGASKLDGAINHVLQLCANLDTWCI---MSPQNCCPQLQEHSQQPCKQYNLC  221
            GL+AS           A+ H ++    L         +     P L+   ++   +Y+  
Sbjct  62   GLSASHFKTLTDIQSRAVPHAIKGRDILGAAKTGSGKTLAFLVPVLENLYRKQWTEYDGL  121

Query  222  HRRSQDPFGDLLKKLMDQIH--DHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRV  279
                  P  +L  ++ + +               G +  +++  +L     L  +     
Sbjct  122  GALILSPTRELAIQIFEVLRKIGRYHTFSAGLVIGGKSLQEEQERLGRMNIL--VCTPGR  179

Query  280  YALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFD----DRK  335
               H+ +       H  +  +D    + D   +  V        + R   LF      + 
Sbjct  180  MLQHMDQTAAFDTAHIQMLVLDEADRIMDMGFQSTVDAIVEHLPKERQTMLFSATQTKKV  239

Query  336  NELAHLATHGPEN-------------------------PKLEMLEKILQRQFSSSNSPRG  370
            ++LA L+   PE                           KL+ L   ++         + 
Sbjct  240  SDLARLSLRDPEYISVHEAASSATPASLQQHYVVTPLPEKLDTLWSFIRNTLK----SKI  295

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            ++F  + +    +    +  Q             G           Q  + ++  KF   
Sbjct  296  LVFFSSSKQVRFVYEAFRHMQP------------GIPLLHLHGRQKQSARIDITSKFSRA  343

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRE  489
              + L +T VA  GLD P  + V++     +  + +   GR AR ++   A +  + S E
Sbjct  344  KYSCLFSTDVAARGLDFPAVDWVIQLDCPEDADTYIHRVGRTARYERDGRAVLFLDPSEE  403

Query  490  LKRELINEALETLMEQAVAAVQKMDQAEYQAKI  522
                     L+ L ++ +   +   +A+ Q  I
Sbjct  404  ------EGMLKRLEQKKIPIERINIKAKKQQSI  430


 Score = 54.4 bits (129),  Expect = 3e-06, Method: Composition-based stats.
 Identities = 25/135 (19%), Positives = 48/135 (36%), Gaps = 10/135 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAY--VAKRHLET----VDGAKVVVLVNRVHLV  60
            Q   +  A++G++I+    TG+GKT  A    V +          DG   ++L     L 
Sbjct  75   QSRAVPHAIKGRDILGAAKTGSGKTL-AFLVPVLENLYRKQWTEYDGLGALILSPTRELA  133

Query  61   TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
             Q  E  R++         L                 ++L+CT   +   +   ++    
Sbjct  134  IQIFEVLRKIGRYHTFSAGLVIGGKSLQEEQERLGRMNILVCTPGRMLQHM---DQTAAF  190

Query  121  ELTVFSLIVVDECHH  135
            +     ++V+DE   
Sbjct  191  DTAHIQMLVLDEADR  205


>sp|A6ZPU3|DBP4_YEAS7 ATP-dependent RNA helicase DBP4 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=DBP4 PE=3 SV=1
Length=770

 Score = 83.7 bits (205),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 30/171 (18%), Positives = 54/171 (32%), Gaps = 19/171 (11%)

Query  333  DRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQG  392
                 L       P   KL++L   ++         + I+F  + +  H +    ++ Q 
Sbjct  261  STPETLQQFYIEVPLADKLDILFSFIKSHLK----CKMIVFLSSSKQVHFVYETFRKMQP  316

Query  393  LQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNV  452
                        G           QR + E + KF       L AT V   G+D P  + 
Sbjct  317  ------------GISLMHLHGRQKQRARTETLDKFNRAQQVCLFATDVVARGIDFPAVDW  364

Query  453  VVRYGLLTNEISMVQARGR-ARADQSVY--AFVATEGSRELKRELINEALE  500
            VV+     +  + +   GR AR  +       +  +      + L    +E
Sbjct  365  VVQVDCPEDVDTYIHRVGRCARYGKKGKSLIMLTPQEQEAFLKRLNARKIE  415


 Score = 57.9 bits (138),  Expect = 2e-07, Method: Composition-based stats.
 Identities = 53/315 (17%), Positives = 100/315 (32%), Gaps = 35/315 (11%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAY------VAKRHLETVDGAKVVVLVNRVHLV  60
            Q + I  +L+G +++    TG+GKT  A        + +      DG   +++     L 
Sbjct  68   QADSIPVSLQGHDVLAAAKTGSGKTL-AFLVPVIEKLYREKWTEFDGLGALIISPTRELA  126

Query  61   TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
             Q  E   ++         L                 ++LI T   +   L        +
Sbjct  127  MQIYEVLTKIGSHTSFSAGLVIGGKDVKFELERISRINILIGTPGRILQHLDQAVG---L  183

Query  121  ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG  180
              +   ++V+DE          ++   + L+  +    P  Q L  +A+     A     
Sbjct  184  NTSNLQMLVLDEADRCL-----DMGFKKTLDAIVSTLSPSRQTLLFSATQSQSVADL---  235

Query  181  AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI  240
                     A L      +           +++      L     + P  D L  L   I
Sbjct  236  ---------ARLSLTDYKTVGTHDVMDGSVNKEASTPETLQQFYIEVPLADKLDILFSFI  286

Query  241  HDHLEMPELSRKFGTQMYE---QQVVKLSEAAA---LAGLQEQRVYALHLRRYNDALLIH  294
              HL+   +     ++      +   K+    +   L G Q+QR     L ++N A  + 
Sbjct  287  KSHLKCKMIVFLSSSKQVHFVYETFRKMQPGISLMHLHGRQKQRARTETLDKFNRAQQV-  345

Query  295  DTVRAVDALAALQDF  309
              + A D +A   DF
Sbjct  346  -CLFATDVVARGIDF  359


>sp|C3PMP5|UVRB_RICAE UvrABC system protein B OS=Rickettsia africae 
(strain ESF-5) OX=347255 GN=uvrB PE=3 SV=1
Length=661

 Score = 83.7 bits (205),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 35/168 (21%), Positives = 75/168 (45%), Gaps = 24/168 (14%)

Query  346  PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
            P   ++E L   +Q     +   R ++ T T++ A  L  +LQ+ +              
Sbjct  426  PATNQVEDLISEMQTTI--AQGFRVLVTTLTQKMAEDLTAYLQELK--------------  469

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLT  460
               S   +++   ++ E+++  + GT+++LV  ++  EGLDIP C +V          L 
Sbjct  470  YKTSYLHSNVHTLERIEILRDLRQGTIDVLVGINLLREGLDIPECGLVAILDADKEGFLR  529

Query  461  NEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVA  508
            +E+S++Q  GRA  + +    +  +   ++ + +     ETL  + + 
Sbjct  530  SEVSLIQTIGRAARNSAGRVILYAD---KMTKSIDKAVSETLRRRQIQ  574


>sp|Q5ZZD9|UVRB_LEGPH UvrABC system protein B OS=Legionella pneumophila 
subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 
/ DSM 7513) OX=272624 GN=uvrB PE=3 SV=1
Length=663

 Score = 83.7 bits (205),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 73/187 (39%), Gaps = 21/187 (11%)

Query  365  SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI  424
            +   R ++ T T++ A  L  +L +               G       + +   ++ E+I
Sbjct  443  AQGSRILVTTLTKRMAEDLTEYLSE--------------HGIKVRYLHSDVDTVERMEII  488

Query  425  QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVY  479
            +  + G  ++LV  ++  EGLD+P   +V          L +E S++Q  GRA  +    
Sbjct  489  RDLRLGEFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTIGRAARNVKGR  548

Query  480  AFVATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD-LQQAALTKRAAQA  537
            A +  +  +  ++R L         ++A      +        + D L+ A + KR    
Sbjct  549  AILYADTITGSMQRALTETERRREKQKAFNLEHGITPKGINKSVEDILEGAYIGKRKTVV  608

Query  538  AQRENQR  544
            A++  Q 
Sbjct  609  AEKSPQY  615


 Score = 37.9 bits (86),  Expect = 0.33, Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 23/63 (37%), Gaps = 7/63 (11%)

Query  11  IMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRM  70
           +   L  + ++    TG+GKT   A+V +           +++     L  Q   EF+  
Sbjct  28  LESGLAKQTLLGV--TGSGKTFTIAHVIQAM-----KRPTLIMAPNKTLAAQLYGEFKAF  80

Query  71  LDG  73
              
Sbjct  81  FPD  83


>sp|Q605S7|UVRB_METCA UvrABC system protein B OS=Methylococcus 
capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) OX=243233 
GN=uvrB PE=3 SV=1
Length=664

 Score = 83.3 bits (204),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 31/165 (19%), Positives = 68/165 (41%), Gaps = 21/165 (13%)

Query  346  PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
            P + +++ L   ++  F      R ++ T T++ A  L  +L +                
Sbjct  421  PASTQVDDLLSEIR--FRVQGGERVLVTTLTKRMAEDLTEYLMEHD--------------  464

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLT  460
                   + +   ++ E+I+  + G  ++LV  ++  EGLDIP  ++V          L 
Sbjct  465  VAVRYLHSDVDTVERVEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLR  524

Query  461  NEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQ  505
            + +S++Q  GRA  +    A +  +   +  ++ I+E      +Q
Sbjct  525  SAVSLIQTIGRAARNLHGKAILYADKVTQSMQQAIDETERRRAKQ  569


>sp|Q82WA9|UVRB_NITEU UvrABC system protein B OS=Nitrosomonas 
europaea (strain ATCC 19718 / CIP 103999 / KCTC 2705 / NBRC 
14298) OX=228410 GN=uvrB PE=3 SV=1
Length=695

 Score = 83.7 bits (205),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 74/191 (39%), Gaps = 20/191 (10%)

Query  359  QRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQR  418
            +    ++ + R ++ T T++ A  L  +           IR + L         + +   
Sbjct  442  EVSLRAAQNERVLVTTLTKRMAEDLTDYFSDH------GIRVRYL--------HSDIDTV  487

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRAR  473
            ++ E+I+  + G  ++LV  ++  EGLDIP  ++V          L +E S++Q  GRA 
Sbjct  488  ERVEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVGILDADKEGFLRSERSLIQTMGRAA  547

Query  474  ADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQ-KMDQAEYQAKIRDLQQAALTK  532
               +    +  +      R  I+E      +Q +   Q  +       +I+DL       
Sbjct  548  RHVNGTVILYADKITNSMRRAIDETERRRNKQKLFNQQNNITPRGVNKRIKDLIDGVYDS  607

Query  533  RAAQAAQRENQ  543
              A   ++  Q
Sbjct  608  ENAAEHRKVAQ  618


 Score = 40.2 bits (92),  Expect = 0.074, Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 7/65 (11%)

Query  8   WEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEF  67
            E I   L  + ++    TG+GKT   A +  R      G   +++     L  Q   E 
Sbjct  30  VEGIESGLSFQTLLGV--TGSGKTFTIANMIARL-----GRPAIIMAPNKTLAAQLYAEM  82

Query  68  RRMLD  72
           R    
Sbjct  83  REFFP  87


>sp|O94761|RECQ4_HUMAN ATP-dependent DNA helicase Q4 OS=Homo sapiens 
OX=9606 GN=RECQL4 PE=1 SV=2
Length=1208

 Score = 84.1 bits (206),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 48/204 (24%), Positives = 76/204 (37%), Gaps = 5/204 (2%)

Query  352  EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ  411
            + L  +LQ +    N    II+   R+    +   L+       V             + 
Sbjct  686  QALLTLLQGK-RFQNLDSIIIYCNRREDTERIAALLRTCLHAAWVPGSGGRAPKTTAEAY  744

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
               M  R+++ V + F  G L ++VAT     GLD P    V+  GL  +  S VQA GR
Sbjct  745  HAGMCSRERRRVQRAFMQGQLRVVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAVGR  804

Query  472  A-RADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAAL  530
            A R  Q  +  +  +   E  REL         +    AV+++ Q  + A      +   
Sbjct  805  AGRDGQPAHCHLFLQPQGEDLRELRRHVHADSTD--FLAVKRLVQRVFPACTCTCTRPPS  862

Query  531  TKRAAQAAQRENQRQQFPVEHVQL  554
             +  A   +R    +  P E  QL
Sbjct  863  EQEGAVGGER-PVPKYPPQEAEQL  885


 Score = 48.3 bits (113),  Expect = 3e-04, Method: Composition-based stats.
 Identities = 37/179 (21%), Positives = 60/179 (34%), Gaps = 8/179 (4%)

Query  2    ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVT  61
              R  Q   +M  L G + ++ LPTGAGK+      A  +         +V+   + L+ 
Sbjct  480  AFRPGQERAVMRILSGISTLLVLPTGAGKSLCYQLPALLYSRRSP-CLTLVVSPLLSLMD  538

Query  62   QHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVE  121
                     L      + ++            A    +L+ T E L  A         + 
Sbjct  539  DQVSGLPPCLKAACIHSGMTRKQRESVLQKIRAAQVHVLMLTPEALVGA-GGLPPAAQLP  597

Query  122  LTVFSLIVVDECHHTHKDTVYNVIMSQYLE--LKLQRAQPLPQVLGLTASPGTGGASKL  178
               F+   +DE H       +N     YL     L+    +   LGLTA+     AS +
Sbjct  598  PVAFAC--IDEAH-CLSQWSHN-FRPCYLRVCKVLRERMGVHCFLGLTATATRRTASDV  652


>sp|Q4P9E5|SPB4_USTMA ATP-dependent rRNA helicase SPB4 OS=Ustilago 
maydis (strain 521 / FGSC 9021) OX=237631 GN=SPB4 PE=3 
SV=2
Length=767

 Score = 83.7 bits (205),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 61/255 (24%), Positives = 95/255 (37%), Gaps = 23/255 (9%)

Query  245  EMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHD-----TVRA  299
             + EL  K G +    +V+ L EA  L  L     +  +LRR    L         +   
Sbjct  218  RLEELLSKKGVKKSSLEVLVLDEADRLLDLG----FTENLRRILSLLPKQRRTGLFSATM  273

Query  300  VDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNE---LAHLATHGPENPKLEMLEK  356
             DAL+ L     R  V     + A+ +  +  DD +     L +L        KL  L +
Sbjct  274  TDALSELVRIGLRNPVRVVVKVEAKHKTSSSIDDSRRTPATLQNLYQLCRAQNKLAQLAR  333

Query  357  ILQRQFSSSNSP------RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSS  410
            I+   F SS +       + I++  T    +       Q   L+   ++   L G    S
Sbjct  334  IV--LFESSQNAISGGARKLIVYFSTCAQVNYFYSVFSQVSILRQHRVKLYALHGKQTPS  391

Query  411  QSTHM-TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
            +   M         +     G  ++L  T VA  GLD+P  +VVV+Y   T+        
Sbjct  392  KRKSMFDTFVASTALDSGASGA-SVLFCTDVAARGLDLPDVDVVVQYDPPTDPKVFSHRC  450

Query  470  GR-ARADQSVYAFVA  483
            GR ARA ++  A V 
Sbjct  451  GRTARAGRNGRAIVM  465


>sp|A1CTZ2|DBP4_ASPCL ATP-dependent RNA helicase dbp4 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=dbp4 PE=3 SV=1
Length=823

 Score = 83.7 bits (205),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 65/413 (16%), Positives = 130/413 (31%), Gaps = 51/413 (12%)

Query  146  MSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCI---MSPQN  202
            + +  E         P + GLT+S           AI+H L+    L         +   
Sbjct  44   LKESFESFSDLPLSEPTLSGLTSSHFKTLTDIQSRAISHALKGRDVLGAAKTGSGKTLAF  103

Query  203  CCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIH--DHLEMPELSRKFGTQMYEQ  260
              P L+   ++   +++        P  +L  ++ + +               G +   +
Sbjct  104  LVPVLENLYRRQWAEHDGLGALILSPTRELAIQIFEVLRKIGRYHTFSAGLVIGGKSLRE  163

Query  261  QVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQI  320
            +  +L     L  +        HL +       +  +  +D    + D   ++ V     
Sbjct  164  EQERLGRMNIL--VCTPGRMLQHLDQTALFDTYNLQMLVLDEADRILDLGFQQTVDAIVG  221

Query  321  LCAERRLLALFD----DRKNELAHLATHGPENP------------KLEM---------LE  355
               + R   LF      + ++LA L+   PE              KL+            
Sbjct  222  HLPKERQTLLFSATQTKKVSDLARLSLRDPEYVAVHETASTATPAKLQQHYVIAPLPQKL  281

Query  356  KILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHM  415
             IL     S+   + ++F  + +    +    +  Q             G          
Sbjct  282  DILWSFIRSNLKSKTMVFFSSGKQVRFVYESFRHMQP------------GIPLMHLHGRQ  329

Query  416  TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA  474
             Q  + +++  F      +L +T VA  GLD P  + V++     +  + +   GR AR 
Sbjct  330  KQGGRLDIMTNFSQAKHCVLFSTDVAARGLDFPAVDWVIQMDCPEDADTYIHRVGRTARY  389

Query  475  DQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQ  527
             +   A +  + S E         L+ L ++ V   +   +A  Q  I+D  Q
Sbjct  390  GRDGRAVLFLDPSEE------EGMLKRLEQKKVPIEKINIKANKQQSIKDQLQ  436


 Score = 54.0 bits (128),  Expect = 4e-06, Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 49/135 (36%), Gaps = 10/135 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAY------VAKRHLETVDGAKVVVLVNRVHLV  60
            Q   I  AL+G++++    TG+GKT  A        + +R     DG   ++L     L 
Sbjct  76   QSRAISHALKGRDVLGAAKTGSGKTL-AFLVPVLENLYRRQWAEHDGLGALILSPTRELA  134

Query  61   TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
             Q  E  R++         L                 ++L+CT   +   L   ++    
Sbjct  135  IQIFEVLRKIGRYHTFSAGLVIGGKSLREEQERLGRMNILVCTPGRMLQHL---DQTALF  191

Query  121  ELTVFSLIVVDECHH  135
            +     ++V+DE   
Sbjct  192  DTYNLQMLVLDEADR  206


>sp|Q9FFT9|RH32_ARATH DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis 
thaliana OX=3702 GN=RH32 PE=2 SV=1
Length=739

 Score = 83.7 bits (205),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 45/270 (17%), Positives = 85/270 (31%), Gaps = 27/270 (10%)

Query  328  LALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWL  387
                      L       P   KL+ML   ++       + R ++F  T++    +    
Sbjct  281  AEAVTATPTSLMQTVMIVPVEKKLDMLWSFIKTHL----NSRILVFLSTKKQVKFVHEAF  336

Query  388  QQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDI  447
             + +             G    S    M+Q  +  V  +F +   ++L  T V   GLD 
Sbjct  337  NKLRP------------GIPLKSLHGKMSQEKRMGVYSQFIE-RQSVLFCTDVLARGLDF  383

Query  448  -PHCNVVVRYGLLTNEISMVQARGR-AR--ADQSVYAFVATEGSRELKRELINEALETLM  503
                + VV+     +  S +   GR AR         F+     + +++    +    L+
Sbjct  384  DKAVDWVVQVDCPEDVASYIHRVGRTARFYTQGKSLLFLTPSEEKMIEKLQEAKVPIKLI  443

Query  504  EQAVAAVQKMDQ--AEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQLLCINCMV  561
            +     +Q++ +  A    K  DLQ  A             +R +   +  +L   N   
Sbjct  444  KANNQKLQEVSRLLAALLVKYPDLQGVAQRAFITYLRSIHKRRDKEIFDVSKLSIENFSA  503

Query  562  AVGHGSDLRKVEGTHHVNVNPNFSNYYNVS  591
            ++G    L         N+       Y  S
Sbjct  504  SLG----LPMTPRIRFTNLKTKKKGVYESS  529


 Score = 50.6 bits (119),  Expect = 4e-05, Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 48/141 (34%), Gaps = 9/141 (6%)

Query  1    MELRSYQWEVIMPALEGKNIIIWLPTGAGKTR---AAAYVAKRHLETVDGAKV--VVLVN  55
            +++   Q   I  AL G++I+    TG+GKT                     V  +++  
Sbjct  92   VDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPILEKLHRERWSPEDGVGCIIISP  151

Query  56   RVHLVTQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP  114
               L  Q      ++    +++   L G               ++L+C    L   +   
Sbjct  152  TRELAAQTFGVLNKVGKFHKFSAGLLIGGREGVDVEKERVHEMNILVCAPGRLLQHM---  208

Query  115  EEEEHVELTVFSLIVVDECHH  135
            +E  + E     ++++DE   
Sbjct  209  DETPNFECPQLQILILDEADR  229


>sp|A1SAC7|RAPA_SHEAM RNA polymerase-associated protein RapA OS=Shewanella 
amazonensis (strain ATCC BAA-1098 / SB2B) OX=326297 
GN=rapA PE=3 SV=1
Length=967

 Score = 83.7 bits (205),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 79/452 (17%), Positives = 152/452 (34%), Gaps = 40/452 (9%)

Query  27   GAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGP  86
            G GKT  A  +  + L T    +V+V+V    L  Q   E  R  + R++V      +  
Sbjct  179  GLGKTIEAGLIIHQQLMTGRAERVLVIVPD-TLRHQWLVEMLRRFNLRFSVFDEDRCVEA  237

Query  87   RAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHT--HKDTVYNV  144
             A   +      L+IC+       L      E      + L+VVDE HH    +D     
Sbjct  238  FADHDNPFYTEQLVICS----LELLRKKRRLEQALDADWDLMVVDEAHHLEWSEDEPSRA  293

Query  145  IMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCC  204
                  ++    A+ +P VL LTA+P         G  +H  +L   LD       Q   
Sbjct  294  -----YQVVEALAEVVPGVLLLTATP------DQLGHQSHFARL-RLLDPDRFYDYQAFL  341

Query  205  PQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVK  264
             +  E   Q   +             + +  L + + +    P + R+   +  ++++ +
Sbjct  342  DE--EKGYQAVAEAADALASGIKLSDEAINGLTELLSEKDIAPAI-RQIQAENLDEELRQ  398

Query  265  LSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAE  324
             +    L  L ++      L R + A +     R   +        +   +    ++   
Sbjct  399  AARDELLQELLDRHGTGRVLFRNSRASVKGFPKREFHSHGFELPEQYVTAMRVNAMMGGA  458

Query  325  RRLLALFDDRKNELAHLATHGPENP---KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAH  381
            R   A      +           N    K +     L     S  S + ++     ++A 
Sbjct  459  RTQEARVAQALSPERIYQEFDDNNASWWKFDPRVDWLIDFLKSHRSKKVLVIASRAETAL  518

Query  382  SLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF--QDGTLNLLVATS  439
            +L   L+ ++G+Q                    M+  ++ +    F  ++G    L+ + 
Sbjct  519  ALEEALRTREGIQATVFH-------------EGMSIIERDKAGAYFAQEEGGAQALICSE  565

Query  440  VAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
            +  EG +    + +V + L  N   + Q  GR
Sbjct  566  IGSEGRNFQFASQLVLFDLPLNPDLLEQRIGR  597


>sp|E9PZJ8|ASCC3_MOUSE Activating signal cointegrator 1 complex 
subunit 3 OS=Mus musculus OX=10090 GN=Ascc3 PE=1 SV=1
Length=2198

 Score = 84.1 bits (206),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 41/176 (23%), Positives = 72/176 (41%), Gaps = 19/176 (11%)

Query  7    QWEVIMPALE-GKNIIIWLPTGAGKTRAAAYVAKRHLET--------VDGAKVVVLVNRV  57
            Q  V   A    +N++I  PTGAGKT  A       +           +  K+V +    
Sbjct  482  QSIVFETAYNTNENMLICAPTGAGKTNIAMLTILHEIRQHFHQGVIKKNEFKIVYVAPMK  541

Query  58   HLVTQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE  116
             L  +    F + L+     V  L+GDM              +L+ T E     + + + 
Sbjct  542  ALAAEMTNYFSKRLEPLGIVVKELTGDMQLS---KSEILRTQMLVTTPEKW--DVVTRKS  596

Query  117  EEHVELTVFS-LIVVDECH--HTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS  169
               V L+    L+++DE H  H  +  V   I+++ L   ++  Q + ++LGL+A+
Sbjct  597  VGDVALSQIVKLLILDEVHLLHEDRGPVLESIVARTLRQ-VESTQSMIRILGLSAT  651


 Score = 71.0 bits (172),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 54/303 (18%), Positives = 99/303 (33%), Gaps = 15/303 (5%)

Query  19    NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEE--FRRMLDGRWT  76
             N+++  PTG+GKT AA     R       +K V +     LV +  ++   R        
Sbjct  1345  NVLLGAPTGSGKTVAAELAIFRVFNKYPTSKAVYIAPLKALVRERMDDWKIRIEEKLGKK  1404

Query  77    VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECH-H  135
             V  L+GD+ P           DL++ T E       S +   +V+    +++++DE H  
Sbjct  1405  VIELTGDVTPDM---KSIAKADLIVTTPEKWDGVSRSWQNRSYVQ--QVNILIIDEIHLL  1459

Query  136   THKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTW  195
               +      ++           +   +++GL  S     A  L   +N       N    
Sbjct  1460  GEERGPVLEVIVSRTNFISSHTEKPVRIVGL--STALANARDLADWLNIKQMGLFNFRPS  1517

Query  196   CIMSPQNCCPQLQE---HSQQPCKQYNLCHR--RSQDPFGDLLKKLMDQIHDHLEMPELS  250
                 P     Q      +  +         +  RS  P   +L  +  +    L   EL 
Sbjct  1518  VRPVPLEVHIQGFPGQHYCPRMASMNKPAFQAIRSHSPAKPVLIFVSSRRQTRLTALELI  1577

Query  251   RKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFY  310
                 T+   +Q + + E      +   R   L L       + H  +   D     + F 
Sbjct  1578  AFLATEEDPKQWLNMDEQEMDNIIGTVRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFV  1637

Query  311   HRE  313
             + +
Sbjct  1638  NCK  1640


 Score = 44.8 bits (104),  Expect = 0.003, Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 65/171 (38%), Gaps = 38/171 (22%)

Query  363   SSSNSPRGIIFT----RTRQSAHSLLLWLQQQQG----LQTVDIRAQLLIGA--------  406
             S S +   +IF     +TR +A  L+ +L  ++     L   +     +IG         
Sbjct  1552  SHSPAKPVLIFVSSRRQTRLTALELIAFLATEEDPKQWLNMDEQEMDNIIGTVRDSNLKL  1611

Query  407   ----GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV--------  454
                 G       + +RD++ V + F +  + +L+ATS    G++ P   V++        
Sbjct  1612  TLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGVNFPAHLVIIKGTEYYDG  1671

Query  455   ---RY-GLLTNEISMVQARGRARA----DQSVYAFVATEGSRELKRELINE  497
                RY         ++Q  GRA      DQ     +  +  ++  ++ + E
Sbjct  1672  KTRRYVDFPIT--DVLQMMGRAGRPQFDDQGKAVILVHDIKKDFYKKFLYE  1720


 Score = 42.5 bits (98),  Expect = 0.015, Method: Composition-based stats.
 Identities = 66/462 (14%), Positives = 129/462 (28%), Gaps = 67/462 (15%)

Query  213   QPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALA  272
             +P                  + +    +    +   ++RK    +   Q+VKL     + 
Sbjct  556   EPLGIVVKELTGDMQLSKSEILRTQMLVTTPEKWDVVTRKSVGDVALSQIVKLLILDEVH  615

Query  273   GLQEQRVYALHLRRYNDALLIHDTVRAVDALA---ALQDFYHREHVTKTQILCAERRLLA  329
              L E R   L          +  T   +  L     L ++                    
Sbjct  616   LLHEDRGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHVNPYIGLFYFDG  675

Query  330   LFDDRKNELAHLATHGPENPKLEMLEKILQRQFSS-----SNSPRGIIFTR----TRQSA  380
              F         L        K++ L  + +  + S         + ++F      T ++A
Sbjct  676   RFRPVPLGQTFLGIKSTN--KMQQLNNMDEVCYESVLKQVKAGHQVMVFVHARNATVRTA  733

Query  381   HSLLLWLQQQQGLQTVDIRAQLLIGA-------------------GNSSQSTHMTQRDQQ  421
              SL+   +    +           G                    G S     M ++D+ 
Sbjct  734   MSLIERAKNSGQISCFLPTEGPEYGHALKQVQKSRNKQVRELFSDGFSIHHAGMLRQDRN  793

Query  422   EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVR------------YGLLTNEISMVQAR  469
              V   F +G + +LV T+    G+++P   VV++              L    + ++Q  
Sbjct  794   LVENLFSNGHIKVLVCTATLAWGVNLPAHAVVIKGTQIYAAKRGSFVDL--GILDVMQIF  851

Query  470   GRARAD-----QSVYAFVATEGSRELKRELIN------EALETLMEQAVAAVQKMDQAEY  518
             GRA                 +        L        + LE+L +   A +        
Sbjct  852   GRAGRPQFDKFGEGIIITTHDKLSHYLSLLTQQNPIESQFLESLADNLNAEIALGTVTNV  911

Query  519   QAKIRDLQQAALTKRAA------QAAQRENQRQQFPVEHVQLLCINCMVAVGHGSDLRKV  572
             +  +R +    L  R          + +  Q      +H + L I     +     +R  
Sbjct  912   EEAVRWMSYTYLYVRMRANPLAYGISHKAYQIDPTLRKHREQLLIEVGQKLDKAKMIRFE  971

Query  573   EGTHH---VNVNPNFSNYYNVSRDPVVINKVFKDWKPGGVIS  611
             E T +    ++    S++Y         N++F   K  G I 
Sbjct  972   ERTGYFSSTDLGRTASHFYIKYNTIETFNELFDAHKTEGDIF  1013


>sp|Q6BSM3|SPB4_DEBHA ATP-dependent rRNA helicase SPB4 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 
/ JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=SPB4 PE=3 SV=1
Length=614

 Score = 83.3 bits (204),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 41/272 (15%), Positives = 91/272 (33%), Gaps = 20/272 (7%)

Query  275  QEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDR  334
            +  ++  +   R    +L     +    L +       + + +T +    + ++   + +
Sbjct  182  EADKLLDISFERDVIKILKQLPKQRRTGLFSATISSAGDTIFRTGMANPVKIVVKSKNSK  241

Query  335  KNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQ  394
                  L      + + E     L          + I++  T  S        Q    ++
Sbjct  242  NAAPTSLNV-SYMHVEPETKISALIALIKDYRFQKCIVYFPTCTSVKHFYSVFQTLVNVE  300

Query  395  TVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGT----LNLLVATSVAEEGLDIPHC  450
              D R +        S    ++ + + + +Q F +G      ++L+ T VA  G+DIP  
Sbjct  301  EED-RYKFF------SLHGQLSTKPRLKTLQNFSEGDSMLHKHVLLTTDVAARGIDIPDV  353

Query  451  NVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAA  509
            ++V++    T+        GR  RA++   A V    +   + + +N      M  +   
Sbjct  354  DLVIQLDPPTDPDVFFHRSGRTGRANKVGQAIVMLNNN-SREEDYVNFMEVKGMTMSNME  412

Query  510  VQKMDQAEYQAKIRDLQQAALTKRAAQAAQRE  541
               +      +KI D  Q    K   +   R 
Sbjct  413  CPNI------SKIHDKFQKKFRKYMLEDRARH  438


 Score = 40.2 bits (92),  Expect = 0.064, Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 45/141 (32%), Gaps = 30/141 (21%)

Query  18   KNIIIWLPTGAGKTRAAAYV------------AKRHLETVDGAK-----VVVLVNRVHLV  60
            K++++   TG+GKT  A  +                 E  +  K      ++L     L 
Sbjct  48   KDVVVEAVTGSGKTL-AFVIPVLQKLSNRLYNIDEEGENPEPVKKGHMLSIILSPTRELA  106

Query  61   TQHGEEFRRML------DGRWTVTTLSGDMGPRAGFGH--LARCHDLLICTAELLQMALT  112
             Q    F ++L              L G +          L     +LI T   L   L+
Sbjct  107  KQIQTVFDKVLEYIPEDKATIKTQLLVGSLSSVREDIDYFLTNKTHILIATPGRLLDFLS  166

Query  113  SPEEEEHVELTVFSLIVVDEC  133
            S     +V+     + V+DE 
Sbjct  167  SN----YVKTNSVEIAVLDEA  183


>sp|B7GSZ2|UVRB_BIFLS UvrABC system protein B OS=Bifidobacterium 
longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 
1222 / NCTC 11817 / S12) OX=391904 GN=uvrB PE=3 SV=1
Length=703

 Score = 83.3 bits (204),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 64/146 (44%), Gaps = 19/146 (13%)

Query  365  SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI  424
            + + R ++ T T++ A  L  +L ++              G       + +    + E++
Sbjct  449  ARNERALVTTLTKKMAEDLTDYLLER--------------GIKVEYLHSDVDTLRRVELL  494

Query  425  QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVY  479
            +  ++G ++++V  ++  EGLD+P  ++V          L +  S++Q  GRA  + S  
Sbjct  495  RMLREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTIGRAARNVSGV  554

Query  480  AFVATEGSRELKRELINEALETLMEQ  505
              +  + + E  R+ I+E      +Q
Sbjct  555  VIMYADETTEAMRQAIDETDRRRAKQ  580


>sp|Q0D622|RH32_ORYSJ DEAD-box ATP-dependent RNA helicase 32 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os07g0517000 PE=2 
SV=2
Length=773

 Score = 83.3 bits (204),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 60/164 (37%), Gaps = 20/164 (12%)

Query  338  LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD  397
            L   A   P   KL ML   ++R        R ++F  + +    +    ++ +      
Sbjct  301  LEQYAMIVPLEQKLNMLWSFIKRHLK----SRILVFLSSVKQVKFVYEVFKKLRP-----  351

Query  398  IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG  457
                   G         M    QQ ++ +F++G  ++L +T +   GLDI   + VV+  
Sbjct  352  -------GISLRCMHGRMKYEVQQAIVAEFKEGH-SVLFSTDIFARGLDIEDVDWVVQVD  403

Query  458  LLTNEISMVQARGR-AR--ADQSVYAFVATEGSRELKRELINEA  498
               N    +   GR AR         F+  E  + L++    E+
Sbjct  404  CPENIALYIHRVGRTARYNKRGKALIFLCPEEEKMLEKLKAAES  447


 Score = 53.6 bits (127),  Expect = 5e-06, Method: Composition-based stats.
 Identities = 26/138 (19%), Positives = 51/138 (37%), Gaps = 8/138 (6%)

Query  2    ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHL---ETVDGAKV--VVLVNR  56
            E+   Q   +  AL G++++    TG+GKT A        L          V  +VL   
Sbjct  102  EMSEIQRAALPHALCGRDVLGAAKTGSGKTLAFVIPVLEKLYRERWGPEDGVGCIVLSPN  161

Query  57   VHLVTQHGEEFRRMLDGR-WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE  115
              L  Q    F+++     ++   + G+         +    ++L+CT   L   +    
Sbjct  162  KDLAGQIFNVFQKVGKLHGFSAACIVGNRKGLDEEKAVINNMNILVCTPGRLLQHMGETT  221

Query  116  EEEHVELTVFSLIVVDEC  133
              +  ++     +V+DE 
Sbjct  222  NFDCSQIQQI--LVIDEA  237


>sp|P25808|SPB4_YEAST ATP-dependent rRNA helicase SPB4 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 
GN=SPB4 PE=1 SV=1
Length=606

 Score = 82.9 bits (203),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 34/174 (20%), Positives = 63/174 (36%), Gaps = 12/174 (7%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            KL++L  IL          + I++  T  S      ++Q       +    ++       
Sbjct  248  KLQLLVSILNNY----KFKKCIVYFPTCVSVSYFYSFIQYLGKRNILVNEVEIF------  297

Query  410  SQSTHMTQRDQQEVIQKFQDGTLN-LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
            S    +    + + +  F D   N +L  T VA  G+DIP  ++V++    TN    +  
Sbjct  298  SLHGKLQTSARTKTLTAFTDSLSNSVLFTTDVAARGIDIPDVDLVIQLDPPTNTDMFMHR  357

Query  469  RGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK  521
             GR  RA++   A       RE       +     +E+    V+ +    Y+  
Sbjct  358  CGRTGRANRVGKAITFLNEGREEDFIPFMQVKNVELEELDLEVKGITTNFYEDF  411


 Score = 40.9 bits (94),  Expect = 0.038, Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 61/186 (33%), Gaps = 31/186 (17%)

Query  26   TGAGKT---RAAAY--VAKRHLETVDGAKVVV----LVNRVHLVTQHGEEFRRML-----  71
            TG+GKT          V K    T    K       +     L  Q        L     
Sbjct  53   TGSGKTAAFVIPVLEKVVKEEANTSKFKKAHFHSLIIAPTRELSRQIESVVLSFLEHYPS  112

Query  72   ---DGRWTVTTLSGDMGPRAGFGHLARCH-DLLICTAELLQMALTSPEEEEHVELTVFSL  127
                 +  +   + +   R    +  R    +LI T   +   L  P     V+ +  S+
Sbjct  113  DLFPIKCQLLVGTNEATVRDDVSNFLRNRPQILIGTPGRVLDFLQMPA----VKTSACSM  168

Query  128  IVVDECHHTHKDTVYNVIMSQYLE-LKLQRAQPLPQVLGL-TASPGTGGASKLDGAINHV  185
            +V+DE           + MS   +  K+ R  P  +  GL +A+  + G+      + + 
Sbjct  169  VVMDEADRL-------LDMSFIKDTEKILRLLPKQRRTGLFSATMRSAGSDIFKTGLRNP  221

Query  186  LQLCAN  191
            +++  N
Sbjct  222  VRITVN  227


>sp|A7A237|SPB4_YEAS7 ATP-dependent rRNA helicase SPB4 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=SPB4 PE=3 
SV=1
Length=606

 Score = 82.9 bits (203),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 34/174 (20%), Positives = 63/174 (36%), Gaps = 12/174 (7%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            KL++L  IL          + I++  T  S      ++Q       +    ++       
Sbjct  248  KLQLLVSILNNY----KFKKCIVYFPTCVSVSYFYSFIQYLGKRNILVNEVEIF------  297

Query  410  SQSTHMTQRDQQEVIQKFQDGTLN-LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
            S    +    + + +  F D   N +L  T VA  G+DIP  ++V++    TN    +  
Sbjct  298  SLHGKLQTSARTKTLTAFTDSLSNSVLFTTDVAARGIDIPDVDLVIQLDPPTNTDMFMHR  357

Query  469  RGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK  521
             GR  RA++   A       RE       +     +E+    V+ +    Y+  
Sbjct  358  CGRTGRANRVGKAITFLNEGREEDFIPFMQVKNVELEELDLEVKGITTNFYEDF  411


 Score = 40.9 bits (94),  Expect = 0.038, Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 61/186 (33%), Gaps = 31/186 (17%)

Query  26   TGAGKT---RAAAY--VAKRHLETVDGAKVVV----LVNRVHLVTQHGEEFRRML-----  71
            TG+GKT          V K    T    K       +     L  Q        L     
Sbjct  53   TGSGKTAAFVIPVLEKVVKEEANTSKFKKAHFHSLIIAPTRELSRQIESVVLSFLEHYPS  112

Query  72   ---DGRWTVTTLSGDMGPRAGFGHLARCH-DLLICTAELLQMALTSPEEEEHVELTVFSL  127
                 +  +   + +   R    +  R    +LI T   +   L  P     V+ +  S+
Sbjct  113  DLFPIKCQLLVGTNEATVRDDVSNFLRNRPQILIGTPGRVLDFLQMPA----VKTSACSM  168

Query  128  IVVDECHHTHKDTVYNVIMSQYLE-LKLQRAQPLPQVLGL-TASPGTGGASKLDGAINHV  185
            +V+DE           + MS   +  K+ R  P  +  GL +A+  + G+      + + 
Sbjct  169  VVMDEADRL-------LDMSFIKDTEKILRLLPKQRRTGLFSATMRSAGSDIFKTGLRNP  221

Query  186  LQLCAN  191
            +++  N
Sbjct  222  VRITVN  227


>sp|Q5X906|UVRB_LEGPA UvrABC system protein B OS=Legionella pneumophila 
(strain Paris) OX=297246 GN=uvrB PE=3 SV=1
Length=663

 Score = 83.3 bits (204),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 35/187 (19%), Positives = 73/187 (39%), Gaps = 21/187 (11%)

Query  365  SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI  424
            +   R ++ T T++ A  L  +L +               G       + +   ++ E+I
Sbjct  443  AQGSRILVTTLTKRMAEDLTEYLSE--------------HGIKVRYLHSDVDTVERMEII  488

Query  425  QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVY  479
            +  + G  ++LV  ++  EGLD+P   +V          L +E S++Q  GRA  +    
Sbjct  489  RDLRLGEFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTIGRAARNVKGR  548

Query  480  AFVATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD-LQQAALTKRAAQA  537
            A +  +  +  ++R L         ++A      +        + D L+ A + KR    
Sbjct  549  AILYADTMTGSMQRALTETERRREKQKAFNLKHGITPKGINKSVEDILEGAYIGKRKTMV  608

Query  538  AQRENQR  544
            A++  + 
Sbjct  609  AEQAPRY  615


 Score = 37.9 bits (86),  Expect = 0.32, Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 23/63 (37%), Gaps = 7/63 (11%)

Query  11  IMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRM  70
           +   L  + ++    TG+GKT   A+V +           +++     L  Q   EF+  
Sbjct  28  LESGLAKQTLLGV--TGSGKTFTIAHVIQAM-----KRPTLIMAPNKTLAAQLYGEFKAF  80

Query  71  LDG  73
              
Sbjct  81  FPD  83


>sp|P75558|UVRB_MYCPN UvrABC system protein B OS=Mycoplasma pneumoniae 
(strain ATCC 29342 / M129 / Subtype 1) OX=272634 GN=uvrB 
PE=3 SV=1
Length=657

 Score = 83.3 bits (204),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 45/264 (17%), Positives = 96/264 (36%), Gaps = 36/264 (14%)

Query  307  QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSN  366
            +  Y      + +I  +   ++         L       P++ ++E L   +  Q    +
Sbjct  392  KVIYVSATPREEEIQLSHNNVVEQLVRPTYLLDPEVIVKPKDNQVEDLVSEIINQ--RKH  449

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R  +   T + A +L  +L+++      +I+   +           +   ++  ++  
Sbjct  450  NGRTFVTVLTIKMAENLTDFLKER------NIKVAYI--------HKDIKALERLILLTD  495

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G    LV  ++  EGLD+P  ++V  +      L  +E S++Q  GRA  +      
Sbjct  496  LRKGEYECLVGINLLREGLDVPEVSLVAIFDADIPGLPRDERSLIQIIGRAARNVHGRVI  555

Query  482  V-----ATEGSRELK----RELINEALETLMEQAVAAVQK----MDQAEYQAKIRDLQQA  528
            +     + +  + +K    R  I  A      +    VQK        + + K  + Q+A
Sbjct  556  MYANTISEQMDKAIKETQRRRTIQMAYNEQHHKTPMTVQKPITLNQPIKLKTKSSEQQKA  615

Query  529  ALTK--RAAQAAQRENQRQQFPVE  550
            AL K           NQ  +  +E
Sbjct  616  ALIKQLTKEMKQAAANQNYELAIE  639


>sp|Q54S03|DDX18_DICDI Probable ATP-dependent RNA helicase ddx18 
OS=Dictyostelium discoideum OX=44689 GN=ddx18 PE=3 SV=1
Length=602

 Score = 82.9 bits (203),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 47/129 (36%), Gaps = 16/129 (12%)

Query  357  ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT  416
            +L      + S + I+F  +  +       L        +DI    L G           
Sbjct  355  LLYTFLKKNLSKKIIVFLSSCNAVKYTAELL------NYIDIPVLELHGR--------QK  400

Query  417  QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA-  474
            Q+ +     +F +    +L+ T VA  GLDIP  + +++Y    +    +   GR AR  
Sbjct  401  QQKRTNTFYEFVNAEKGILICTDVAARGLDIPSVDWIIQYDPPDDPKEYIHRVGRTARGV  460

Query  475  DQSVYAFVA  483
             +   A + 
Sbjct  461  GKKGRALLF  469


 Score = 64.4 bits (155),  Expect = 2e-09, Method: Composition-based stats.
 Identities = 64/396 (16%), Positives = 135/396 (34%), Gaps = 54/396 (14%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAY------VAKRHLETVDGAKVVVLVNRVHLV  60
            Q + I+P LEGK+++    TG+GKT  A        + K + +  +G  V+++     L 
Sbjct  146  QAKSILPLLEGKDLLGAARTGSGKTL-AFLIPAIEVLVKSNFKPRNGTGVIIISPTRELA  204

Query  61   TQHGEEFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
             Q     R ++        +  G    +     L +  +LL+ T   L   L + +    
Sbjct  205  LQIYGVARELMKYHTQTHGIVIGGASKKPEEERLEKGVNLLVATPGRLLDHLQNTK--GF  262

Query  120  VELTVFSLIVVDEC------------HHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLT  167
            +       +++DE             H   K          +   + ++   + +V  L 
Sbjct  263  IT-KNLKCLIIDEADRILEVGFEEEMHQIIKKVPKTRQTMLFSATQTRKVDDIAKV-SLN  320

Query  168  ASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQ-EHSQQPCKQYNLCHRRSQ  226
             SP   G           +     L+   ++ P      L     ++   +  +    S 
Sbjct  321  NSPVYVGVDD-----EREISTVEGLEQGYVVCPSERRFLLLYTFLKKNLSKKIIVFLSSC  375

Query  227  DPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR  286
            +           ++ +++++P L      +++ +Q  +         +  ++   +    
Sbjct  376  NAVKYT-----AELLNYIDIPVL------ELHGRQKQQKRTNTFYEFVNAEKGILICTDV  424

Query  287  YNDALLIHDTVRAV--DALAALQDFYHREHVTKTQILCAERRLLALFDD-----RKNELA  339
                L I      +  D     +++ HR   T   +    R LL L        +  +LA
Sbjct  425  AARGLDIPSVDWIIQYDPPDDPKEYIHRVGRTARGVGKKGRALLFLLPKELGFLKYLKLA  484

Query  340  HLATHGPENPKLEM------LEKILQRQFSSSNSPR  369
             +  +  E PK ++      LEK++ + F   NS R
Sbjct  485  KVPLNEYEFPKSKIANVQDQLEKVVSQNFYLYNSAR  520


>sp|A4W8C2|UVRB_ENT38 UvrABC system protein B OS=Enterobacter 
sp. (strain 638) OX=399742 GN=uvrB PE=3 SV=1
Length=673

 Score = 82.9 bits (203),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 33/195 (17%), Positives = 74/195 (38%), Gaps = 20/195 (10%)

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R ++ T T++ A  L  +L++               G       + +   ++ E+I+ 
Sbjct  446  NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  + +  A 
Sbjct  492  LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNINGKAI  551

Query  482  VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR  540
            +  +  +  + + +         +        +       K+ D+          +A  R
Sbjct  552  LYGDRITASMAKAISETERRREKQHQYNLDNGIVPQGLNKKVVDILALGQGLAKTKAKGR  611

Query  541  ENQRQQFPVEHVQLL  555
               R     + V+L+
Sbjct  612  GKSRSPVEADPVELV  626


>sp|O34750|YFML_BACSU Probable ATP-dependent RNA helicase YfmL 
OS=Bacillus subtilis (strain 168) OX=224308 GN=yfmL PE=1 SV=1
Length=376

 Score = 81.4 bits (199),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 66/371 (18%), Positives = 124/371 (33%), Gaps = 49/371 (13%)

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
            +P    A++L      V+                         ++   +          P
Sbjct  28   TPVQEQAAQLIMDGKDVI-------AESPTGTGKTLAYALPVLERIKPEQKHPQAVILAP  80

Query  229  FGDLLKKLMDQIHDHLEMPELS--RKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR  286
              +L+ ++   I D     EL      G    ++QV KL +   +      RV+ L ++ 
Sbjct  81   SRELVMQIFQVIQDWKAGSELRAASLIGGANVKKQVEKLKKHPHIIVGTPGRVFEL-IKA  139

Query  287  YNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD-------------  333
                +    T+  +D    L    HRE + +        R L  F               
Sbjct  140  KKLKMHEVKTI-VLDETDQLVLPEHRETMKQIIKTTLRDRQLLCFSATLKKETEDVLREL  198

Query  334  -RKNELAHLATHGPENPKLEMLEKI--------LQRQFSSSNSPRGIIFTRTRQSAHSLL  384
             ++ E+  +     E  K++    I        L ++ S     + ++F R       + 
Sbjct  199  AQEPEVLKVQRSKAEAGKVKHQYLICDQRDKVKLLQKLSRLEGMQALVFVR------DIG  252

Query  385  LWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEG  444
                  + L    +   +L      S++  M   ++ ++I  F+DG   LL+AT +A  G
Sbjct  253  NLSVYAEKLAYHHVELGVLH-----SEAKKM---ERAKIIATFEDGEFPLLLATDIAARG  304

Query  445  LDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLM  503
            LDI +   V+   +  +E   V   GR  RA +            E K + + + L   +
Sbjct  305  LDIENLPYVIHADIP-DEDGYVHRSGRTGRAGKEGNVLSLVTKLEESKLKKMAKKLGVEL  363

Query  504  EQAVAAVQKMD  514
             +AV A  K+ 
Sbjct  364  SEAVYAGGKLK  374


 Score = 58.3 bits (139),  Expect = 9e-08, Method: Composition-based stats.
 Identities = 39/232 (17%), Positives = 79/232 (34%), Gaps = 25/232 (11%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE  65
            Q +     ++GK++I   PTG GKT A A      ++      + V+L     LV Q  +
Sbjct  31   QEQAAQLIMDGKDVIAESPTGTGKTLAYALPVLERIKPEQKHPQAVILAPSRELVMQIFQ  90

Query  66   EFRR-MLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV  124
              +           +L G    +     L +   +++ T   +   + + +    +++  
Sbjct  91   VIQDWKAGSELRAASLIGGANVKKQVEKLKKHPHIIVGTPGRVFELIKAKK----LKMHE  146

Query  125  FSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINH  184
               IV+DE         +   M Q ++  L+      Q+L  +A+        L      
Sbjct  147  VKTIVLDETDQLVL-PEHRETMKQIIKTTLRDR----QLLCFSATLKKETEDVLRELAQE  201

Query  185  VLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKL  236
                        ++  Q    +  +       QY +C +R +      L +L
Sbjct  202  ----------PEVLKVQRSKAEAGKVKH----QYLICDQRDKVKLLQKLSRL  239


>sp|Q47EI2|UVRB_DECAR UvrABC system protein B OS=Dechloromonas 
aromatica (strain RCB) OX=159087 GN=uvrB PE=3 SV=1
Length=690

 Score = 82.9 bits (203),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 71/186 (38%), Gaps = 20/186 (11%)

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
              R ++ T T++ +  L  +L                 G       + +   ++ E+I+ 
Sbjct  458  GERVLVTTLTKRMSEDLTDFLADN--------------GIKVRYLHSDIDTVERVEIIRD  503

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLDIP  ++V          L +E S++Q  GRA       A 
Sbjct  504  LRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARHIHGTAI  563

Query  482  VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR  540
            +  +  ++ ++R +         + A      +       KI+D+        +AQ   +
Sbjct  564  LYADTVTQSMQRAIAETGRRREKQIAFNLEHGITPRGVSKKIKDIIDGVYDAGSAQTELK  623

Query  541  ENQRQQ  546
              Q++ 
Sbjct  624  AAQQRA  629


 Score = 37.9 bits (86),  Expect = 0.36, Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 24/65 (37%), Gaps = 7/65 (11%)

Query  8   WEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEF  67
            E +   L  + ++    TG+GKT   A V  R      G   +VL     L  Q   EF
Sbjct  38  VEGLDDGLSFQTLLGV--TGSGKTYTMANVIART-----GRPALVLAPNKTLAAQLYSEF  90

Query  68  RRMLD  72
           +    
Sbjct  91  KEFFP  95


>sp|Q03JK4|UVRB_STRTD UvrABC system protein B OS=Streptococcus 
thermophilus (strain ATCC BAA-491 / LMD-9) OX=322159 GN=uvrB 
PE=3 SV=1
Length=668

 Score = 82.9 bits (203),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 34/201 (17%), Positives = 76/201 (38%), Gaps = 20/201 (10%)

Query  363  SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE  422
             +    R  + T T++ A  L  +L++              +G       + +   ++ E
Sbjct  451  RTEKGERVFVTTLTKKMAEDLTDYLKE--------------MGVKVKYMHSDIKTLERTE  496

Query  423  VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQS  477
            +I+  + G  ++L+  ++  EG+D+P  ++V          L NE  ++Q  GRA  +  
Sbjct  497  IIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSD  556

Query  478  VYAFVATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQ  536
             +  +  +  +  +++ +   A    ++ A      +     + +IRDL     T  A  
Sbjct  557  GHVIMYADKITESMQKAMDETARRREIQMAYNKEHGITPQTIKKEIRDLISITKTNEAEV  616

Query  537  AAQRENQRQQFPVEHVQLLCI  557
            A    N       E  + +  
Sbjct  617  AEDTVNYSAMNKKERQEAIKK  637


>sp|Q32K36|RAPA_SHIDS RNA polymerase-associated protein RapA OS=Shigella 
dysenteriae serotype 1 (strain Sd197) OX=300267 GN=rapA 
PE=3 SV=1
Length=968

 Score = 83.3 bits (204),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 78/476 (16%), Positives = 153/476 (32%), Gaps = 44/476 (9%)

Query  5    SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ  62
             +Q  +           +++    G GKT  A  +  + L +    +V+++V    L  Q
Sbjct  156  PHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVP-ETLQHQ  214

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
               E  R  + R+ +         +    +      L+IC+ + ++    S +  EH+  
Sbjct  215  WLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICSPDFVR---RSKQRLEHLCE  271

Query  123  TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG  180
              + L+VVDE HH    +D           +   Q A+ +P VL LTA+P      +  G
Sbjct  272  AEWDLLVVDEAHHLVWSEDAPSRE-----YQAIEQLAEHVPGVLLLTATP------EQLG  320

Query  181  AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI  240
              +H  +L   LD            +  + + +P                D L  L + I
Sbjct  321  MESHFARL-RLLDPNRFHDFAQFVEE--QKNYRPVADAVAMLLAGNKLSNDELNMLGEMI  377

Query  241  HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV  300
             +    P L          Q   +   +  +      RV   + R         +     
Sbjct  378  GEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIK  437

Query  301  DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG---PENPKLEMLEKI  357
              L        +          AE R   +    +        +      +P++E L   
Sbjct  438  LPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGY  497

Query  358  LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ  417
            L        S + ++      +A  L   L++++G++                    M+ 
Sbjct  498  LTSH----RSQKVLVICAKAATALQLEQVLREREGIRAAVFH-------------EGMSI  540

Query  418  RDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
             ++      F  +D    +L+ + +  EG +    + +V + L  N   + Q  GR
Sbjct  541  IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR  596


>sp|Q67T57|UVRB_SYMTH UvrABC system protein B OS=Symbiobacterium 
thermophilum (strain DSM 24528 / JCM 14929 / IAM 14863 / 
T) OX=292459 GN=uvrB PE=3 SV=1
Length=659

 Score = 82.9 bits (203),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 77/208 (37%), Gaps = 26/208 (13%)

Query  365  SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI  424
              + R ++ T T++ A  L  +L++              +G       + +   ++ +++
Sbjct  444  KKNQRVLVTTLTKRMAEDLTEYLKE--------------LGVKVRYMHSDVETIERMQIV  489

Query  425  QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVY  479
            +  + G  ++LV  ++  EGLDIP  ++V          L  E S++Q  GRA  +    
Sbjct  490  RDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAARNAEGK  549

Query  480  AFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKI----RDLQQAALTKRAA  535
              +  +   +  ++ IN   ET   +A+              I    RD+ QA      A
Sbjct  550  VIMYADRITQSMQKAIN---ETNRRRAIQEAYNRKHGIVPKTIVKPVRDVIQAVKPVAEA  606

Query  536  QAAQRENQRQQFPVEHVQLLCINCMVAV  563
              A   +       + V  L    M A 
Sbjct  607  GPANILDTPPHEIPKVVAKLRKEMMQAA  634


>sp|Q5M3D5|UVRB_STRT2 UvrABC system protein B OS=Streptococcus 
thermophilus (strain ATCC BAA-250 / LMG 18311) OX=264199 GN=uvrB 
PE=3 SV=1
Length=668

 Score = 82.9 bits (203),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 34/201 (17%), Positives = 76/201 (38%), Gaps = 20/201 (10%)

Query  363  SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE  422
             +    R  + T T++ A  L  +L++              +G       + +   ++ E
Sbjct  451  RTEKGERVFVTTLTKKMAEDLTDYLKE--------------MGVKVKYMHSDIKTLERTE  496

Query  423  VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQS  477
            +I+  + G  ++L+  ++  EG+D+P  ++V          L NE  ++Q  GRA  +  
Sbjct  497  IIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSD  556

Query  478  VYAFVATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQ  536
             +  +  +  +  +++ +   A    ++ A      +     + +IRDL     T  A  
Sbjct  557  GHVIMYADKITESMQKAMDETARRREIQMAYNKEHGITPQTIKKEIRDLISITKTNEAEV  616

Query  537  AAQRENQRQQFPVEHVQLLCI  557
            A    N       E  + +  
Sbjct  617  AEDTVNYSAMNKKERQEAIKK  637


>sp|Q5LYS1|UVRB_STRT1 UvrABC system protein B OS=Streptococcus 
thermophilus (strain CNRZ 1066) OX=299768 GN=uvrB PE=3 SV=1
Length=668

 Score = 82.9 bits (203),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 34/201 (17%), Positives = 76/201 (38%), Gaps = 20/201 (10%)

Query  363  SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE  422
             +    R  + T T++ A  L  +L++              +G       + +   ++ E
Sbjct  451  RTEKGERVFVTTLTKKMAEDLTDYLKE--------------MGVKVKYMHSDIKTLERTE  496

Query  423  VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQS  477
            +I+  + G  ++L+  ++  EG+D+P  ++V          L NE  ++Q  GRA  +  
Sbjct  497  IIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSD  556

Query  478  VYAFVATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQ  536
             +  +  +  +  +++ +   A    ++ A      +     + +IRDL     T  A  
Sbjct  557  GHVIMYADKITESMQKAMDETARRREIQMAYNKEHGITPQTIKKEIRDLISITKTNEAEV  616

Query  537  AAQRENQRQQFPVEHVQLLCI  557
            A    N       E  + +  
Sbjct  617  AEDTVNYSAMNKKERQEAIKK  637


>sp|A1CW14|HAS1_NEOFI ATP-dependent RNA helicase has1 OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / 
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=has1 
PE=3 SV=1
Length=622

 Score = 82.9 bits (203),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 86/260 (33%), Gaps = 44/260 (17%)

Query  253  FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHR  312
             G      +  KL +   L      R+   HL+     +  +     +D    + +    
Sbjct  247  IGGANRRAEAEKLMKGVNLLIATPGRLLD-HLQNTQGFIFKNLKTLVIDEADRILEVGFE  305

Query  313  EHVTK-TQILCAERRLLALFDD----RKNELAHLAT----------HGPENPKLEMLEK-  356
            + + +  +IL +E R   LF      +  +LA ++           H  E+  +E LE+ 
Sbjct  306  DEMRQIVKILPSEERQTMLFSATQTTKVEDLARISLRPGPLYINVDHRKEHSTVEGLEQG  365

Query  357  -----------ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
                       +L      +   + I+F  +              + L  +D+    L G
Sbjct  366  YVICEADKRFLLLFSFLKRNLKKKIIVFFSSCNCVK------YHAELLNYIDLPVLELHG  419

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM  465
                       Q+ +     +F +     L+ T VA  GLDIP  + ++++    +    
Sbjct  420  --------KQKQQKRTNTFFEFCNAKQGTLICTDVAARGLDIPAVDWIIQFDPPDDPRDY  471

Query  466  VQARGRA--RADQSVYAFVA  483
            +   GR    A+    + + 
Sbjct  472  IHRVGRTARGANAKGRSLMF  491


 Score = 51.3 bits (121),  Expect = 2e-05, Method: Composition-based stats.
 Identities = 32/135 (24%), Positives = 47/135 (35%), Gaps = 9/135 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT---RAAAYVAKRHLETVD--GAKVVVLVNRVHLVT  61
            Q   I P L G++++    TG+GKT      A      L      G  V+V+     L  
Sbjct  167  QRRTIPPLLAGRDVLGAAKTGSGKTLSFLIPAVEMLSALRFKPRNGTGVIVVSPTRELAL  226

Query  62   QHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
            Q     R +          + G    RA    L +  +LLI T   L   L + +     
Sbjct  227  QIFGVARELCQYHSQTYGIVIGGANRRAEAEKLMKGVNLLIATPGRLLDHLQNTQGFIFK  286

Query  121  ELTVFSLIVVDECHH  135
             L     +V+DE   
Sbjct  287  NLKT---LVIDEADR  298


>sp|Q4WQM4|HAS1_ASPFU ATP-dependent RNA helicase has1 OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 
/ Af293) OX=330879 GN=has1 PE=3 SV=2
Length=622

 Score = 82.9 bits (203),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 49/318 (15%), Positives = 100/318 (31%), Gaps = 47/318 (15%)

Query  253  FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHR  312
             G      +  KL +   L      R+   HL+     +  +     +D    + +    
Sbjct  247  IGGANRRAEAEKLMKGVNLLIATPGRLLD-HLQNTQGFVFKNLKTLVIDEADRILEVGFE  305

Query  313  EHVTK-TQILCAERRLLALFDD----RKNELAHLAT----------HGPENPKLEMLEK-  356
            + + +  +IL +E R   LF      +  +LA ++           H  E+  +E LE+ 
Sbjct  306  DEMRQIVKILPSEERQTMLFSATQTTKVEDLARISLRPGPLYINVDHRKEHSTVEGLEQG  365

Query  357  -----------ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
                       +L      +   + I+F  +              + L  +D+    L G
Sbjct  366  YVICEADKRFLLLFSFLKRNLKKKIIVFFSSCNCVK------YHAELLNYIDLPVLELHG  419

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM  465
                       Q+ +     +F +     L+ T VA  GLDIP  + ++++    +    
Sbjct  420  --------KQKQQKRTNTFFEFCNAKQGTLICTDVAARGLDIPAVDWIIQFDPPDDPRDY  471

Query  466  VQARGRARAD---QSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKI  522
            +   GR       +               + L    +  +  +  A      Q++ +  I
Sbjct  472  IHRVGRTARGTNAKGRSLMFLQPSEVGFLKHLKEARVPVVEFEFPANKIVNVQSQLEKLI  531

Query  523  RDLQQAALTKRAAQAAQR  540
               Q   L K A +  + 
Sbjct  532  G--QNYYLNKSAKEGYRS  547


 Score = 51.3 bits (121),  Expect = 2e-05, Method: Composition-based stats.
 Identities = 32/135 (24%), Positives = 47/135 (35%), Gaps = 9/135 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT---RAAAYVAKRHLETVD--GAKVVVLVNRVHLVT  61
            Q   I P L G++++    TG+GKT      A      L      G  V+V+     L  
Sbjct  167  QRRTIPPLLAGRDVLGAAKTGSGKTLSFLIPAVEMLSALRFKPRNGTGVIVVSPTRELAL  226

Query  62   QHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
            Q     R +          + G    RA    L +  +LLI T   L   L + +     
Sbjct  227  QIFGVARELCQYHSQTYGIVIGGANRRAEAEKLMKGVNLLIATPGRLLDHLQNTQGFVFK  286

Query  121  ELTVFSLIVVDECHH  135
             L     +V+DE   
Sbjct  287  NLKT---LVIDEADR  298


>sp|Q837R9|UVRB_ENTFA UvrABC system protein B OS=Enterococcus 
faecalis (strain ATCC 700802 / V583) OX=226185 GN=uvrB PE=3 
SV=1
Length=665

 Score = 82.9 bits (203),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 71/183 (39%), Gaps = 20/183 (11%)

Query  361  QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ  420
                    R  + T T++ A  L  + ++              +G       + +   ++
Sbjct  444  HERIEKDQRVFVTTLTKKMAEDLTDYFKE--------------LGLKVKYLHSDIKTLER  489

Query  421  QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARAD  475
             E+I+  + G  ++L+  ++  EG+D+P  +++          L +E S+VQ  GRA  +
Sbjct  490  TEIIRDLRLGEFDILIGINLLREGIDVPEVSLIAILDADKEGFLRSERSLVQTMGRAARN  549

Query  476  QSVYAFVATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRA  534
                  +  +  +  ++R +   A    +++A      ++      +IRDL   + T   
Sbjct  550  AEGKVIMYADKITDSMQRAMDETARRRAIQEAYNEEHGIEPKTIIKEIRDLISISKTADK  609

Query  535  AQA  537
             + 
Sbjct  610  DET  612


>sp|Q5P9H3|UVRB_ANAMM UvrABC system protein B OS=Anaplasma marginale 
(strain St. Maries) OX=234826 GN=uvrB PE=3 SV=1
Length=651

 Score = 82.9 bits (203),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 32/201 (16%), Positives = 82/201 (41%), Gaps = 22/201 (11%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            R +I T T++ A +L  ++++              +G   +   + +   ++ E+I   +
Sbjct  446  RVLITTLTKKMAENLTEYMRE--------------MGIKVAYLHSDVKTLERIEIISDLR  491

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAFVA  483
             G +++LV  ++  EGLDIP C +V          L +  S++Q  GRA  +      + 
Sbjct  492  LGVIDVLVGVNLMREGLDIPECALVGILDADKEGFLRSTTSLIQTIGRAARNVEGRVIL-  550

Query  484  TEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQ  543
               +  + + +     ET   + +      + +     I+   Q +L++R   + ++ ++
Sbjct  551  --YANVITKSMRTAMEETDRRRDIQRKYNQEHSIVPRTIQKPVQTSLSERVGSSRKKVSR  608

Query  544  RQQFPVEHVQLLCINCMVAVG  564
                   +  ++ +   + + 
Sbjct  609  DTNTDPANRDIVELQKEMLLC  629


>sp|B9KH59|UVRB_ANAMF UvrABC system protein B OS=Anaplasma marginale 
(strain Florida) OX=320483 GN=uvrB PE=3 SV=1
Length=651

 Score = 82.9 bits (203),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 32/201 (16%), Positives = 82/201 (41%), Gaps = 22/201 (11%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            R +I T T++ A +L  ++++              +G   +   + +   ++ E+I   +
Sbjct  446  RVLITTLTKKMAENLTEYMRE--------------MGIKVAYLHSDVKTLERIEIISDLR  491

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAFVA  483
             G +++LV  ++  EGLDIP C +V          L +  S++Q  GRA  +      + 
Sbjct  492  LGVIDVLVGVNLMREGLDIPECALVGILDADKEGFLRSTTSLIQTIGRAARNVEGRVIL-  550

Query  484  TEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQ  543
               +  + + +     ET   + +      + +     I+   Q +L++R   + ++ ++
Sbjct  551  --YANVITKSMRTAMEETDRRRDIQRKYNQEHSIVPRTIQKPVQTSLSERVGSSRKKVSR  608

Query  544  RQQFPVEHVQLLCINCMVAVG  564
                   +  ++ +   + + 
Sbjct  609  DTNTDPANRDIVELQKEMLLC  629


>sp|Q9K6X9|UVRB_HALH5 UvrABC system protein B OS=Halalkalibacterium 
halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 
/ JCM 9153 / C-125) OX=272558 GN=uvrB PE=3 SV=1
Length=660

 Score = 82.9 bits (203),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 19/126 (15%)

Query  365  SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI  424
            + + R ++ T T++ A  L  +L++              +G       + +   ++ E+I
Sbjct  443  AKNERVLVTTLTKKMAEDLTDYLKE--------------VGIKVRYLHSEVKTLERIEII  488

Query  425  QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVY  479
            ++ + GT N+LV  ++  EGLDIP  ++V          L  E S++Q  GRA  + + Y
Sbjct  489  RQLRLGTFNVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAARNANGY  548

Query  480  AFVATE  485
              +  +
Sbjct  549  VIMYAD  554


>sp|Q2HCV7|ROK1_CHAGB ATP-dependent RNA helicase ROK1 OS=Chaetomium 
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 
6347 / NRRL 1970) OX=306901 GN=ROK1 PE=3 SV=1
Length=667

 Score = 82.9 bits (203),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 65/160 (41%), Gaps = 25/160 (16%)

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ---A  468
             + M    + +++ +F+ G + +LV T V   G+D    N VV Y + T+  + V     
Sbjct  477  HSSMADSARSKIMARFRAGEVWVLVTTDVLARGVDFAGVNGVVNYDVPTSAAAYVHRAGR  536

Query  469  RGRARADQSVYAFVATEGSRELKRELIN------------------EALETLMEQAVAAV  510
             GRA  +  V     T+      + + N                    ++  +  A+  V
Sbjct  537  TGRAGREGGVAVTFYTKDDIPFVKSVANVIAASEKQAGVQADGGGGGTVQKWLLDALPKV  596

Query  511  QKMDQAEYQAKIRDLQQ----AALTKRAAQAAQRENQRQQ  546
             K D+ + + +  + ++    A +T +++   +RE+ R Q
Sbjct  597  AKEDKRKLKVRGVESRRTGGKATITTKSSWERRREHNRAQ  636


>sp|Q2UUN6|HAS1_ASPOR ATP-dependent RNA helicase has1 OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=has1 
PE=3 SV=2
Length=596

 Score = 82.5 bits (202),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 84/260 (32%), Gaps = 44/260 (17%)

Query  253  FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHR  312
             G      +  KL +   L      R+   HL+     +  +     +D    + +    
Sbjct  226  IGGANRRAEAEKLMKGVNLLVATPGRLLD-HLQNTQGFVFKNLRTLIIDEADRILEVGFE  284

Query  313  EHVTK-TQILCAERRLLALFDD----RKNELAHLAT----------HGPENPKLEMLEK-  356
            + + +  +IL +E R   LF      +  +LA ++           H  E+  +E LE+ 
Sbjct  285  DEMRQIAKILPSENRQTMLFSATQTTKVEDLARISLRPGPLYINVDHRKEHSTVEGLEQG  344

Query  357  -----------ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
                       +L      +   + I+F  +  S       L        +D+    L G
Sbjct  345  YVICEADKRFLLLFSFLKRNLKKKIIVFLSSCNSVKYYGELL------NYIDLPVLDLHG  398

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM  465
                       Q+ +     +F +     L+ T VA  GLDIP  + ++++    +    
Sbjct  399  --------KQKQQKRTNTFFEFCNAKQGTLICTDVAARGLDIPAVDWIIQFDPPDDPRDY  450

Query  466  VQARGRARAD--QSVYAFVA  483
            +   GR          + + 
Sbjct  451  IHRVGRTARGSNGKGRSLMF  470


 Score = 53.6 bits (127),  Expect = 4e-06, Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 48/135 (36%), Gaps = 9/135 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT---RAAAYVAKRHLETVD--GAKVVVLVNRVHLVT  61
            Q   I P L G++++    TG+GKT      A      L      G   +++     L  
Sbjct  146  QRRTIPPLLAGRDVLGAAKTGSGKTLSFLIPAIEMLSALRFKPRNGTGAIIVSPTRELAL  205

Query  62   QHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
            Q   + R +L         + G    RA    L +  +LL+ T   L   L + +     
Sbjct  206  QIFGQVRELLAHHSQTYGIVIGGANRRAEAEKLMKGVNLLVATPGRLLDHLQNTQGFVFK  265

Query  121  ELTVFSLIVVDECHH  135
             L     +++DE   
Sbjct  266  NLRT---LIIDEADR  277


>sp|Q54ZI9|DDX20_DICDI Probable ATP-dependent RNA helicase ddx20 
OS=Dictyostelium discoideum OX=44689 GN=ddx20 PE=3 SV=2
Length=849

 Score = 82.9 bits (203),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 20/127 (16%), Positives = 43/127 (34%), Gaps = 14/127 (11%)

Query  351  LEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSS  410
             +   K L       +  + IIF   +     L   L ++              G   + 
Sbjct  352  FQNKCKSLVLVLEQVSFYQAIIFCNHKIRGEELTRQLNRE--------------GWPTAF  397

Query  411  QSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARG  470
             +    Q+D+   +   +   + +LV+T +   G+D+   N+V+   L  +  +     G
Sbjct  398  IAGGQNQKDRLSTMSALKSFNIRILVSTDLISRGIDVERVNLVINLDLPKDHETYFHRIG  457

Query  471  RARADQS  477
            R     +
Sbjct  458  RTGRFGT  464


>sp|Q4R4T6|DDX28_MACFA Probable ATP-dependent RNA helicase DDX28 
OS=Macaca fascicularis OX=9541 GN=DDX28 PE=2 SV=1
Length=546

 Score = 82.5 bits (202),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 43/131 (33%), Gaps = 17/131 (13%)

Query  350  KLEMLEKILQRQ---FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA  406
            K+  L  IL+       +  S   ++F  +  + + L   L   +               
Sbjct  377  KVAELVHILKHHNRAERTGPSGTVLVFCNSSSTVNWLGYILDDHK--------------I  422

Query  407  GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV  466
             +      M    +  + Q FQ  + ++L+ T +A  GLD     +VV Y         +
Sbjct  423  QHLRLQGQMPALMRAGIFQSFQKSSRDILLCTDIASRGLDSTGVELVVNYDFPPTLQDYI  482

Query  467  QARGRARADQS  477
               GR     S
Sbjct  483  HRAGRVGRVGS  493


 Score = 54.0 bits (128),  Expect = 3e-06, Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 52/139 (37%), Gaps = 17/139 (12%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLE--------TVDGAKVVVLVNRVH  58
            Q   I   L G++++    TG+GKT +      + L          +   + +VLV    
Sbjct  155  QSNTIPQLLRGRHVLCAAETGSGKTLSYLLPLFQRLMVQPSLDSLRIPAPRGLVLVPSRE  214

Query  59   LVTQHGEEFRRMLDGRWT--VTTLSGDMGPRAGFGHLAR--CHDLLICTAELLQMALTSP  114
            L  Q  +   + L       V  L G  G       LAR    D+L+ T   L  AL S 
Sbjct  215  L-AQQVQAVAQPLGRSLGLLVRDLEGGHGMCRIRMQLARQPSADVLVATPGALWKALKSR  273

Query  115  EEEEHVELTVFSLIVVDEC  133
                 + L   S +V+DE 
Sbjct  274  L----ISLEQLSFLVLDEA  288


>sp|Q40466|IF413_TOBAC Eukaryotic initiation factor 4A-13 (Fragment) 
OS=Nicotiana tabacum OX=4097 PE=2 SV=1
Length=355

 Score = 81.0 bits (198),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 56/144 (39%), Gaps = 19/144 (13%)

Query  315  VTKTQILCAERRLLALFDDRKNELAHLATH-GPENPKLEMLEKILQRQFSSSNSPRGIIF  373
            +T+  +    R L+   D     +     +   E  KLE L  +    + +    + +IF
Sbjct  230  ITRKFMNQPVRILVKRDDVTLEGIKQFYVNVDKEEWKLETLCDL----YETLAITQSVIF  285

Query  374  TRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN  433
              TR+    L   ++ +                  S+    M Q  +  ++++F+ G+  
Sbjct  286  VNTRRKVDWLTDKMRSRD--------------HTVSATHGDMDQNTRDIIMREFRSGSSR  331

Query  434  LLVATSVAEEGLDIPHCNVVVRYG  457
            +L+ T +   G+D+   ++V+ Y 
Sbjct  332  VLITTDLLARGIDVQQVSLVINYD  355


>sp|A5E2Z9|HAS1_LODEL ATP-dependent RNA helicase HAS1 OS=Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=HAS1 PE=3 SV=1
Length=559

 Score = 82.5 bits (202),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 52/301 (17%), Positives = 95/301 (32%), Gaps = 45/301 (15%)

Query  253  FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHR  312
             G     Q+  KL++   L      R+   HL+     + ++     +D    + +    
Sbjct  200  IGGADRRQEATKLAKGVNLLVATPGRLLD-HLKNTQGFVFLNLKALVIDEADRILEIGFE  258

Query  313  EHVTKT-QILCAERRLLALFDD----RKNELAHLA-THGPENPKL---------------  351
            E + +  +IL  E R   LF      +  +LA ++   GP    +               
Sbjct  259  EEMKQIIKILPNEDRQTMLFSATQTTKVEDLARISLRPGPLYINVVPEKDVSTADGLEQG  318

Query  352  -----EMLEKILQRQFSSSN-SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
                      +L   F   N   + I+F  +  S       L        +D+    L G
Sbjct  319  YVVCDSDKRFLLLFSFLKRNIKKKIIVFLSSCNSVKFYSELL------NYIDLPVLDLHG  372

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM  465
                       Q+ +     +F +    +LV T VA  GLDIP  + ++++    +    
Sbjct  373  --------KQKQQKRTNTFFEFCNAKQGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDY  424

Query  466  VQARGR-ARA--DQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKI  522
            +   GR AR    +       T       R L    +     +  A      Q++    I
Sbjct  425  IHRVGRTARGTDGKGKSLMFLTPSELGFLRYLKAANVPLNEYEFPANKIANVQSQLTKLI  484

Query  523  R  523
            +
Sbjct  485  K  485


 Score = 56.7 bits (135),  Expect = 4e-07, Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 56/135 (41%), Gaps = 9/135 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA----AAYVAKRH-LETVDGAKVVVLVNRVHLVT  61
            Q + I P L G++++    TG+GKT A    A  +     ++  +G  V+++     L  
Sbjct  120  QAKTIPPLLAGRDVLGAAKTGSGKTLAFLLPAVELLYSLKIKPRNGTAVIIITPTRELAL  179

Query  62   QHGEEFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
            Q     R++++       +  G    R     LA+  +LL+ T   L   L + +    +
Sbjct  180  QIFGVARQLMEYHSQTCGIVIGGADRRQEATKLAKGVNLLVATPGRLLDHLKNTQGFVFL  239

Query  121  ELTVFSLIVVDECHH  135
             L     +V+DE   
Sbjct  240  NLKA---LVIDEADR  251


>sp|Q5P0E7|UVRB_AROAE UvrABC system protein B OS=Aromatoleum aromaticum 
(strain DSM 19018 / LMG 30748 / EbN1) OX=76114 GN=uvrB 
PE=3 SV=1
Length=685

 Score = 82.5 bits (202),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 36/190 (19%), Positives = 72/190 (38%), Gaps = 20/190 (11%)

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
              R ++ T T++ A  L  +L +        IR + L         + +   ++ E+I+ 
Sbjct  458  GERVLVTTLTKRMAEDLTDYLAEN------GIRVRYL--------HSDIDTVERVEIIRD  503

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLDIP  ++V          L +E S++Q  GRA    +  A 
Sbjct  504  LRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARHINGRAI  563

Query  482  VATEGSRELKRELINEALETLMEQ-AVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR  540
            +  +      R  I+E     ++Q A      +       +I+D+          +  + 
Sbjct  564  LYADVVTRSMRAAIDETERRRVKQIAFNQANGIVPKTVSKRIKDIIDGVYGGDVERDGRS  623

Query  541  ENQRQQFPVE  550
              +       
Sbjct  624  VAEPPPEYFS  633


 Score = 35.5 bits (80),  Expect = 1.7, Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 18/47 (38%), Gaps = 5/47 (11%)

Query  26  TGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLD  72
           TG+GKT   A V  R      G   +VL     L  Q   EFR    
Sbjct  54  TGSGKTYTMANVIARC-----GRPALVLAPNKTLAAQLYAEFREFFP  95


>sp|A8ALP3|RAPA_CITK8 RNA polymerase-associated protein RapA OS=Citrobacter 
koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) 
OX=290338 GN=rapA PE=3 SV=1
Length=968

 Score = 82.9 bits (203),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 79/476 (17%), Positives = 152/476 (32%), Gaps = 44/476 (9%)

Query  5    SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ  62
             +Q  +           +++    G GKT  A  +  + L +    +V+++V    L  Q
Sbjct  156  PHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVP-ETLQHQ  214

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
               E  R  + R+ +         +    +      L+IC+   L  A  + +  EH+  
Sbjct  215  WLVEMLRRFNLRFALFDDERYTEAQHDAYNPFETEQLVICS---LDFARRNKQRLEHLCD  271

Query  123  TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG  180
              + L+VVDE HH    +D               Q A+ +P VL LTA+P      +  G
Sbjct  272  AQWDLLVVDEAHHLVWSEDAPSRE-----YMAIEQLAERVPGVLLLTATP------EQLG  320

Query  181  AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI  240
              +H  +L   L             + ++ + +P                + L  L D I
Sbjct  321  MESHFARL--RLLDPSRFHDFEQFVE-EQKNYRPVADAVAMLLAGNKLSNEELNMLGDLI  377

Query  241  HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV  300
             +    P L      +   Q   +   +  +      RV   + R         +     
Sbjct  378  GEQDIEPLLQTANSDRDGAQNARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIK  437

Query  301  DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG---PENPKLEMLEKI  357
              L        +          AE R   +    +         G     +P++E     
Sbjct  438  LPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPEQIYQEFEGDSGTWWNFDPRVE----W  493

Query  358  LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ  417
            L    +S  S + ++      +A  L   L++++G++                    M+ 
Sbjct  494  LMGHLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFH-------------EGMSI  540

Query  418  RDQQEVIQKFQ--DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
             ++      F   D    +L+ + +  EG +    + +V + L  N   + Q  GR
Sbjct  541  IERDRAAAWFSEEDSGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGR  596


>sp|Q9P7T8|YIW2_SCHPO Uncharacterized helicase C694.02 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC694.02 
PE=3 SV=1
Length=1717

 Score = 83.3 bits (204),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 63/440 (14%), Positives = 138/440 (31%), Gaps = 34/440 (8%)

Query  1     MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV  60
              +   +Q E +      +++ +  PT +GKT  + Y  ++ L   D   V+ +     LV
Sbjct  734   FDPDEWQRETLDILDRDESVFVVAPTSSGKTFISFYAMEKVLRDNDDGVVIYVAPTKALV  793

Query  61    TQ-HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
              Q   E + R              +  R    +      +LI    +LQ  L  P     
Sbjct  794   NQLSAEVYARFNKHYPHAGQTVWSVYTRDYRINNPTNCQVLITVPHVLQSMLLQPALANA  853

Query  120   VELTVFSLIVVDECHHTHKDTVYNVIMSQ-YLELKLQRAQPLPQVLGLTASPGTGGASKL  178
                     I+ DE H           M    +E +L    P P ++ L+A+ G     ++
Sbjct  854   WCPK-IRRIIFDEIH-CIGQ------MEDGLVEEQLLLLAPCP-IVALSATVGNPQEFQV  904

Query  179   DGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCH---RRSQDPFGDLLKK  235
                ++ + +  +      ++  ++    L++      K++N         Q  F      
Sbjct  905   --WLSALQRAHSYP--IHLIVHEHRYSDLRKFVYGGAKEFNGLQEEGDLGQIAFIHPAAA  960

Query  236   LMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVY--ALHLRRYNDALLI  293
             +         +    R      Y  ++V   +      L   R +     +++ +     
Sbjct  961   MSFSDGSTTNLAFEPRDCLQLYYAMKLVSKGDFKISRKLDPDRYFEDIPFIKKVDAVGYE  1020

Query  294   HDTVRAVDALAALQDFYH----REHVTKTQILCAERRLLALFDDRKNELAHLATHGPENP  349
                   +D  A+L + +      + + K      ++ + +  +   +  +  A      P
Sbjct  1021  KKIKATIDTWASLPNAFAPNSPFQALIKHFCSEPQKVVNSQLELHNSAYSLDAISQNLLP  1080

Query  350   KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIR--AQLLIGAG  407
              L+ L         S      I F   RQ    L   + +    +  + R  ++      
Sbjct  1081  MLKDL--------HSKELLPAICFNYDRQECEYLAEIVFKTLVEKEREWRENSEEWKEKM  1132

Query  408   NSSQSTHMTQRDQQEVIQKF  427
                +    T   + + ++KF
Sbjct  1133  REYKKWQSTANQRAKQMEKF  1152


 Score = 45.2 bits (105),  Expect = 0.002, Method: Composition-based stats.
 Identities = 31/184 (17%), Positives = 62/184 (34%), Gaps = 7/184 (4%)

Query  300   VDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQ  359
                L   +  +        + +   ++  +  + R  ++        E  K + L++   
Sbjct  1111  FKTLVEKEREWRENSEEWKEKMREYKKWQSTANQRAKQMEKFEKSATEKQKEQALKEAGD  1170

Query  360   ----RQFSSSNSPRGIIFT--RTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQST  413
                   F          F   ++      L   L+  +  Q V       +  G     +
Sbjct  1171  ISWIEFFDPEEPSPEFSFAGAKSTYGKEELYRDLEALRRRQAVPEWYVDALYRGIGIHHS  1230

Query  414   HMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-LLTNEISMVQARGRA  472
              + +R +Q V   F+ G L +++AT     G+++P   VV     L  N ++  QA GRA
Sbjct  1231  GLNRRYRQIVEVLFRCGQLTVVIATRTLSLGINMPCRTVVFLGDSLQLNALNFHQAAGRA  1290

Query  473   RADQ  476
                 
Sbjct  1291  GRRG  1294


>sp|Q75C76|DBP4_EREGS ATP-dependent RNA helicase DBP4 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=DBP4 PE=3 SV=2
Length=763

 Score = 82.9 bits (203),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 28/189 (15%), Positives = 64/189 (34%), Gaps = 19/189 (10%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            KL++L   ++         + I+F  + +  H +    ++ Q             G    
Sbjct  276  KLDILFSFIKSHLK----SKMIVFLSSSKQVHFVYETFRKMQP------------GISLM  319

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                   Q  + E + KF       L +T V   G+D P  + V++     +  + +   
Sbjct  320  HLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQTDCPEDVDTYIHRA  379

Query  470  GR-ARADQSVYA--FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQ  526
            GR AR  ++  +   +  +        L  + +E        + +K  + + Q+ +    
Sbjct  380  GRSARYGKTGKSLLMLTPQEEDAFLARLKGKLIEPSKLNIKQSKRKSIKPQLQSLLFKDP  439

Query  527  QAALTKRAA  535
            +     + A
Sbjct  440  ELKYLAQKA  448


 Score = 52.9 bits (125),  Expect = 9e-06, Method: Composition-based stats.
 Identities = 25/135 (19%), Positives = 44/135 (33%), Gaps = 8/135 (6%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT---RAAAYVAKRHLETV--DGAKVVVLVNRVHLVT  61
            Q   I  AL+G +++    TG+GKT            H      DG   +V+     L  
Sbjct  68   QRAAIPVALKGHDVLGAAKTGSGKTLAFLVPVLEKLYHERWTELDGLGALVISPTRELAM  127

Query  62   QHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVE  121
            Q  E   ++         L                 ++LI T   L   +   ++   + 
Sbjct  128  QIYEVLVKIGKYMSFSAGLVIGGKDVKFEMERVSKINILIGTPGRLLQHM---DQSVGLN  184

Query  122  LTVFSLIVVDECHHT  136
             +   ++V+DE    
Sbjct  185  TSNLQILVLDEADRC  199


>sp|Q8YXS9|UVRB_NOSS1 UvrABC system protein B OS=Nostoc sp. (strain 
PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=uvrB PE=3 
SV=1
Length=665

 Score = 82.5 bits (202),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 30/144 (21%), Positives = 58/144 (40%), Gaps = 23/144 (16%)

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
              R +I T T++ A  L  +LQ+               G       + +    + E++Q 
Sbjct  444  HERVLITTLTKRMAEDLTEYLQE--------------HGVKVRYLHSEINSIQRIEILQD  489

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G+ ++LV  ++  EGLD+P  ++V          L  E S++Q  GRA       A 
Sbjct  490  LRQGSFDVLVGVNLLREGLDLPEVSLVAIMDADKEGFLRAERSLIQTIGRAARHIRGQAI  549

Query  482  VATEGSRELKRELINEALETLMEQ  505
            +  +       + + +A+E    +
Sbjct  550  LYADN----MTDSMIKAIEETDRR  569


>sp|Q46IE1|UVRB_PROMT UvrABC system protein B OS=Prochlorococcus 
marinus (strain NATL2A) OX=59920 GN=uvrB PE=3 SV=1
Length=678

 Score = 82.5 bits (202),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 36/184 (20%), Positives = 79/184 (43%), Gaps = 24/184 (13%)

Query  338  LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD  397
            L  L    P + +++ L   +++   +S + R ++ T T++ A  L  +L + +      
Sbjct  417  LDPLVEVRPTHGQVDDLLFEIRK--RASKNQRILVTTLTKRMAEDLTDYLSENK------  468

Query  398  IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG  457
            IR + L         + +   ++ E+IQ  + G  ++LV  ++  EGLD+P  ++VV   
Sbjct  469  IRVRYL--------HSEIHSIERIEIIQDLRLGEYDVLVGVNLLREGLDLPEVSLVVILD  520

Query  458  -----LLTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQK  512
                  L  + S++Q  GRA       A +  +   ++   +     ET   + +  +  
Sbjct  521  ADKEGFLRAQRSLIQTIGRAARHVEGLALLYAD---KMTDSMAKAISETERRREIQNIYN  577

Query  513  MDQA  516
            ++  
Sbjct  578  IEHG  581


>sp|Q8ZQQ4|UVRB_SALTY UvrABC system protein B OS=Salmonella typhimurium 
(strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=uvrB 
PE=3 SV=1
Length=673

 Score = 82.5 bits (202),  Expect = 5e-15, Method: Composition-based stats.
 Identities = 31/150 (21%), Positives = 62/150 (41%), Gaps = 29/150 (19%)

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R ++ T T++ A  L  +L++               G       + +   ++ E+I+ 
Sbjct  446  NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  + +  A 
Sbjct  492  LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI  551

Query  482  VATE----------GSRELKRELINEALET  501
            +  +          G  E +RE   +  E 
Sbjct  552  LYGDKITPSMAKAIGETERRREKQQKYNEE  581


>sp|B4TQU3|UVRB_SALSV UvrABC system protein B OS=Salmonella schwarzengrund 
(strain CVM19633) OX=439843 GN=uvrB PE=3 SV=1
Length=673

 Score = 82.5 bits (202),  Expect = 5e-15, Method: Composition-based stats.
 Identities = 31/150 (21%), Positives = 62/150 (41%), Gaps = 29/150 (19%)

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R ++ T T++ A  L  +L++               G       + +   ++ E+I+ 
Sbjct  446  NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  + +  A 
Sbjct  492  LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI  551

Query  482  VATE----------GSRELKRELINEALET  501
            +  +          G  E +RE   +  E 
Sbjct  552  LYGDKITPSMAKAIGETERRREKQQKYNEE  581


>sp|C0PWY7|UVRB_SALPC UvrABC system protein B OS=Salmonella paratyphi 
C (strain RKS4594) OX=476213 GN=uvrB PE=3 SV=1
Length=673

 Score = 82.5 bits (202),  Expect = 5e-15, Method: Composition-based stats.
 Identities = 31/150 (21%), Positives = 62/150 (41%), Gaps = 29/150 (19%)

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R ++ T T++ A  L  +L++               G       + +   ++ E+I+ 
Sbjct  446  NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  + +  A 
Sbjct  492  LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI  551

Query  482  VATE----------GSRELKRELINEALET  501
            +  +          G  E +RE   +  E 
Sbjct  552  LYGDKITPSMAKAIGETERRREKQQKYNEE  581


>sp|A9MTI2|UVRB_SALPB UvrABC system protein B OS=Salmonella paratyphi 
B (strain ATCC BAA-1250 / SPB7) OX=1016998 GN=uvrB PE=3 
SV=1
Length=673

 Score = 82.5 bits (202),  Expect = 5e-15, Method: Composition-based stats.
 Identities = 31/150 (21%), Positives = 62/150 (41%), Gaps = 29/150 (19%)

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R ++ T T++ A  L  +L++               G       + +   ++ E+I+ 
Sbjct  446  NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  + +  A 
Sbjct  492  LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI  551

Query  482  VATE----------GSRELKRELINEALET  501
            +  +          G  E +RE   +  E 
Sbjct  552  LYGDKITPSMAKAIGETERRREKQQKYNEE  581


>sp|B4SZK1|UVRB_SALNS UvrABC system protein B OS=Salmonella newport 
(strain SL254) OX=423368 GN=uvrB PE=3 SV=1
Length=673

 Score = 82.5 bits (202),  Expect = 5e-15, Method: Composition-based stats.
 Identities = 31/150 (21%), Positives = 62/150 (41%), Gaps = 29/150 (19%)

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R ++ T T++ A  L  +L++               G       + +   ++ E+I+ 
Sbjct  446  NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  + +  A 
Sbjct  492  LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI  551

Query  482  VATE----------GSRELKRELINEALET  501
            +  +          G  E +RE   +  E 
Sbjct  552  LYGDKITPSMAKAIGETERRREKQQKYNEE  581


>sp|B4TC52|UVRB_SALHS UvrABC system protein B OS=Salmonella heidelberg 
(strain SL476) OX=454169 GN=uvrB PE=3 SV=1
Length=673

 Score = 82.5 bits (202),  Expect = 5e-15, Method: Composition-based stats.
 Identities = 31/150 (21%), Positives = 62/150 (41%), Gaps = 29/150 (19%)

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R ++ T T++ A  L  +L++               G       + +   ++ E+I+ 
Sbjct  446  NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  + +  A 
Sbjct  492  LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI  551

Query  482  VATE----------GSRELKRELINEALET  501
            +  +          G  E +RE   +  E 
Sbjct  552  LYGDKITPSMAKAIGETERRREKQQKYNEE  581


>sp|B5R765|UVRB_SALG2 UvrABC system protein B OS=Salmonella gallinarum 
(strain 287/91 / NCTC 13346) OX=550538 GN=uvrB PE=3 
SV=1
Length=673

 Score = 82.5 bits (202),  Expect = 5e-15, Method: Composition-based stats.
 Identities = 31/150 (21%), Positives = 62/150 (41%), Gaps = 29/150 (19%)

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R ++ T T++ A  L  +L++               G       + +   ++ E+I+ 
Sbjct  446  NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  + +  A 
Sbjct  492  LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI  551

Query  482  VATE----------GSRELKRELINEALET  501
            +  +          G  E +RE   +  E 
Sbjct  552  LYGDKITPSMAKAIGETERRREKQQKYNEE  581


>sp|B5QX69|UVRB_SALEP UvrABC system protein B OS=Salmonella enteritidis 
PT4 (strain P125109) OX=550537 GN=uvrB PE=3 SV=1
Length=673

 Score = 82.5 bits (202),  Expect = 5e-15, Method: Composition-based stats.
 Identities = 31/150 (21%), Positives = 62/150 (41%), Gaps = 29/150 (19%)

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R ++ T T++ A  L  +L++               G       + +   ++ E+I+ 
Sbjct  446  NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  + +  A 
Sbjct  492  LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI  551

Query  482  VATE----------GSRELKRELINEALET  501
            +  +          G  E +RE   +  E 
Sbjct  552  LYGDKITPSMAKAIGETERRREKQQKYNEE  581


>sp|B5FP65|UVRB_SALDC UvrABC system protein B OS=Salmonella dublin 
(strain CT_02021853) OX=439851 GN=uvrB PE=3 SV=1
Length=673

 Score = 82.5 bits (202),  Expect = 5e-15, Method: Composition-based stats.
 Identities = 31/150 (21%), Positives = 62/150 (41%), Gaps = 29/150 (19%)

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R ++ T T++ A  L  +L++               G       + +   ++ E+I+ 
Sbjct  446  NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  + +  A 
Sbjct  492  LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI  551

Query  482  VATE----------GSRELKRELINEALET  501
            +  +          G  E +RE   +  E 
Sbjct  552  LYGDKITPSMAKAIGETERRREKQQKYNEE  581


>sp|Q57RF9|UVRB_SALCH UvrABC system protein B OS=Salmonella choleraesuis 
(strain SC-B67) OX=321314 GN=uvrB PE=3 SV=1
Length=673

 Score = 82.5 bits (202),  Expect = 5e-15, Method: Composition-based stats.
 Identities = 31/150 (21%), Positives = 62/150 (41%), Gaps = 29/150 (19%)

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R ++ T T++ A  L  +L++               G       + +   ++ E+I+ 
Sbjct  446  NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  + +  A 
Sbjct  492  LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI  551

Query  482  VATE----------GSRELKRELINEALET  501
            +  +          G  E +RE   +  E 
Sbjct  552  LYGDKITPSMAKAIGETERRREKQQKYNEE  581


>sp|B5F076|UVRB_SALA4 UvrABC system protein B OS=Salmonella agona 
(strain SL483) OX=454166 GN=uvrB PE=3 SV=1
Length=673

 Score = 82.5 bits (202),  Expect = 5e-15, Method: Composition-based stats.
 Identities = 31/150 (21%), Positives = 62/150 (41%), Gaps = 29/150 (19%)

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R ++ T T++ A  L  +L++               G       + +   ++ E+I+ 
Sbjct  446  NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  + +  A 
Sbjct  492  LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI  551

Query  482  VATE----------GSRELKRELINEALET  501
            +  +          G  E +RE   +  E 
Sbjct  552  LYGDKITPSMAKAIGETERRREKQQKYNEE  581


>sp|B5BC27|UVRB_SALPK UvrABC system protein B OS=Salmonella paratyphi 
A (strain AKU_12601) OX=554290 GN=uvrB PE=3 SV=1
Length=673

 Score = 82.5 bits (202),  Expect = 5e-15, Method: Composition-based stats.
 Identities = 31/150 (21%), Positives = 62/150 (41%), Gaps = 29/150 (19%)

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R ++ T T++ A  L  +L++               G       + +   ++ E+I+ 
Sbjct  446  NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  + +  A 
Sbjct  492  LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI  551

Query  482  VATE----------GSRELKRELINEALET  501
            +  +          G  E +RE   +  E 
Sbjct  552  LYGDKITPSMAKAIGETERRREKQQKYNEE  581


>sp|Q5PG52|UVRB_SALPA UvrABC system protein B OS=Salmonella paratyphi 
A (strain ATCC 9150 / SARB42) OX=295319 GN=uvrB PE=3 
SV=1
Length=673

 Score = 82.5 bits (202),  Expect = 5e-15, Method: Composition-based stats.
 Identities = 31/150 (21%), Positives = 62/150 (41%), Gaps = 29/150 (19%)

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R ++ T T++ A  L  +L++               G       + +   ++ E+I+ 
Sbjct  446  NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  + +  A 
Sbjct  492  LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI  551

Query  482  VATE----------GSRELKRELINEALET  501
            +  +          G  E +RE   +  E 
Sbjct  552  LYGDKITPSMAKAIGETERRREKQQKYNEE  581


>sp|Q5JGV6|HELS_THEKO ATP-dependent DNA helicase Hel308 OS=Thermococcus 
kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) 
OX=69014 GN=hel308 PE=3 SV=1
Length=1125

 Score = 82.9 bits (203),  Expect = 5e-15, Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 66/170 (39%), Gaps = 14/170 (8%)

Query  7    QWEVIMPA-LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q E +    LEGKN+++ +PT +GKT  +  V    L   +G K V LV    L  +   
Sbjct  28   QAEALKSGVLEGKNLVLAIPTASGKTLVSEIVMVNKL-LSEGGKAVYLVPLKALAEEKYR  86

Query  66   EFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF  125
            EF+        V   +GD      +      +D+++ TAE     L          +   
Sbjct  87   EFKEWEVLGLRVAATTGDYDSTDEW---LGRYDIIVATAEKFDSLL----RHGASWIKDV  139

Query  126  SLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGA  175
             L+V DE H           +   L   L +A    Q+L L+A+ G    
Sbjct  140  KLVVADEVHL-IGSYDRGATLEMILTHMLGKA----QILALSATVGNAEE  184


 Score = 37.1 bits (84),  Expect = 0.66, Method: Composition-based stats.
 Identities = 14/94 (15%), Positives = 34/94 (36%), Gaps = 21/94 (22%)

Query  365  SNSPRGIIFTRTRQSAH--------------------SLLLWLQQQQGLQTVDIRAQLLI  404
                + ++F  TR+SA                      L   +   +   T +   + L 
Sbjct  236  KKGKQALVFVNTRRSAEKEAISLSSKVSKLLTKPETRRLEELISSIEDNPTTEKLKRALK  295

Query  405  GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT  438
            G G +     +++ ++  +   F++G + ++ AT
Sbjct  296  G-GVAFHHAGLSRAERTLIEDAFRNGLIKVITAT  328


>sp|A2C5B3|UVRB_PROM1 UvrABC system protein B OS=Prochlorococcus 
marinus (strain NATL1A) OX=167555 GN=uvrB PE=3 SV=1
Length=678

 Score = 82.5 bits (202),  Expect = 5e-15, Method: Composition-based stats.
 Identities = 36/184 (20%), Positives = 79/184 (43%), Gaps = 24/184 (13%)

Query  338  LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD  397
            L  L    P + +++ L   +++   +S + R ++ T T++ A  L  +L + +      
Sbjct  417  LDPLVEVRPTHGQVDDLLFEIRK--RASKNQRILVTTLTKRMAEDLTDYLSENK------  468

Query  398  IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG  457
            IR + L         + +   ++ E+IQ  + G  ++LV  ++  EGLD+P  ++VV   
Sbjct  469  IRVRYL--------HSEIHSIERIEIIQDLRLGEYDVLVGVNLLREGLDLPEVSLVVILD  520

Query  458  -----LLTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQK  512
                  L  + S++Q  GRA       A +  +   ++   +     ET   + +  +  
Sbjct  521  ADKEGFLRAQRSLIQTIGRAARHVEGLALLYAD---KMTDSMAKAISETERRREIQNIYN  577

Query  513  MDQA  516
            ++  
Sbjct  578  IEHG  581


>sp|A9MJE1|UVRB_SALAR UvrABC system protein B OS=Salmonella arizonae 
(strain ATCC BAA-731 / CDC346-86 / RSK2980) OX=41514 
GN=uvrB PE=3 SV=1
Length=673

 Score = 82.5 bits (202),  Expect = 5e-15, Method: Composition-based stats.
 Identities = 31/150 (21%), Positives = 62/150 (41%), Gaps = 29/150 (19%)

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R ++ T T++ A  L  +L++               G       + +   ++ E+I+ 
Sbjct  446  NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  + +  A 
Sbjct  492  LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI  551

Query  482  VATE----------GSRELKRELINEALET  501
            +  +          G  E +RE   +  E 
Sbjct  552  LYGDKITPSMAKAIGETERRREKQQKYNEE  581


>sp|A6T6L9|UVRB_KLEP7 UvrABC system protein B OS=Klebsiella pneumoniae 
subsp. pneumoniae (strain ATCC 700721 / MGH 78578) 
OX=272620 GN=uvrB PE=3 SV=1
Length=673

 Score = 82.5 bits (202),  Expect = 5e-15, Method: Composition-based stats.
 Identities = 31/150 (21%), Positives = 61/150 (41%), Gaps = 29/150 (19%)

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R ++ T T++ A  L  +L++               G       + +   ++ E+I+ 
Sbjct  446  NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  + +  A 
Sbjct  492  LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI  551

Query  482  VATE----------GSRELKRELINEALET  501
            +  +          G  E +RE      E 
Sbjct  552  LYGDKITPSMAKAIGETERRREKQQRYNEE  581


>sp|Q9NUL7|DDX28_HUMAN Probable ATP-dependent RNA helicase DDX28 
OS=Homo sapiens OX=9606 GN=DDX28 PE=1 SV=2
Length=540

 Score = 82.2 bits (201),  Expect = 5e-15, Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 43/131 (33%), Gaps = 17/131 (13%)

Query  350  KLEMLEKIL---QRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA  406
            K+  L  IL    R   +  S   ++F  +  + + L   L   +               
Sbjct  377  KVAELVHILKHRDRAERTGPSGTVLVFCNSSSTVNWLGYILDDHK--------------I  422

Query  407  GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV  466
             +      M    +  + Q FQ  + ++L+ T +A  GLD     +VV Y         +
Sbjct  423  QHLRLQGQMPALMRVGIFQSFQKSSRDILLCTDIASRGLDSTGVELVVNYDFPPTLQDYI  482

Query  467  QARGRARADQS  477
               GR     S
Sbjct  483  HRAGRVGRVGS  493


 Score = 50.6 bits (119),  Expect = 4e-05, Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 50/131 (38%), Gaps = 17/131 (13%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRHLE--------TVDGAKVVVLVNRVHLVTQHGEE  66
            L G++++    TG+GKT +      + L          +   + +VLV    L  Q    
Sbjct  163  LRGRHVVCAAETGSGKTLSYLLPLLQRLLGQPSLDSLPIPAPRGLVLVPSREL-AQQVRA  221

Query  67   FRRMLDGRWT--VTTLSGDMGPRAGFGHLAR--CHDLLICTAELLQMALTSPEEEEHVEL  122
              + L       V  L G  G R     L+R    D+L+ T   L  AL S      + L
Sbjct  222  VAQPLGRSLGLLVRDLEGGHGMRRIRLQLSRQPSADVLVATPGALWKALKSRL----ISL  277

Query  123  TVFSLIVVDEC  133
               S +V+DE 
Sbjct  278  EQLSFLVLDEA  288


>sp|A5E3K3|DBP4_LODEL ATP-dependent RNA helicase DBP4 OS=Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=DBP4 PE=3 SV=1
Length=775

 Score = 82.5 bits (202),  Expect = 5e-15, Method: Composition-based stats.
 Identities = 36/181 (20%), Positives = 62/181 (34%), Gaps = 26/181 (14%)

Query  331  FDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIF---TRTRQSAHSLLLWL  387
                   L       P N KL++L   ++         + ++F   ++  Q A+     L
Sbjct  261  ISAIPESLDQYYVKVPLNEKLDVLWSFIKSHLK----SKILVFFSSSKQVQYAYETFRTL  316

Query  388  QQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDI  447
            Q    L  +  R +               Q  + E   KF       L AT +   GLD 
Sbjct  317  QPGIPLMKLYGRHK---------------QTSRLETTVKFSQAQHACLFATDIVARGLDF  361

Query  448  PHCNVVVRYGLLTNEISMVQARGR----ARADQSVYAFVATEGSRELKRELINEALETLM  503
            P  + V++     +  + V   GR     R  +S+   + TE    LKR  +++    +M
Sbjct  362  PAIDWVIQVDCPEDVATYVHRVGRSARFGRQGKSLLMLLPTEEDGMLKRMKVHKIEPKMM  421

Query  504  E  504
             
Sbjct  422  N  422


 Score = 58.7 bits (140),  Expect = 1e-07, Method: Composition-based stats.
 Identities = 54/363 (15%), Positives = 111/363 (31%), Gaps = 35/363 (10%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAY------VAKRHLETVDGAKVVVLVNRVHLV  60
            Q + I  AL+G++++    TG+GKT  A        + +  +   DG   +++     L 
Sbjct  75   QKKSIPVALKGEDLMGTARTGSGKTL-AFLIPVIEILLRNDITEYDGLAALIVSPTRELA  133

Query  61   TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
             Q  E   ++         L                 ++L+ T   +   L        +
Sbjct  134  VQIFEVLAKIGKYNSFSAGLVTGGKDVQYEKERISRMNILVGTPGRISQHLNESVG---M  190

Query  121  ELTVFSLIVVDECHHT-----------HKDT-VYNVIMSQYLELKLQRAQPLPQVLGLTA  168
            E +   ++V+DE                 +          +        Q L + L LT 
Sbjct  191  ETSNLQVLVLDEADRCLDMGFRKQIDNILNHLPRTRQTLLFSATHTDSVQDLAR-LSLTN  249

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
                G +S  D     +  +  +LD + +  P N    +     +   +  +    S   
Sbjct  250  PKRIGTSSDQD-----ISAIPESLDQYYVKVPLNEKLDVLWSFIKSHLKSKILVFFSSSK  304

Query  229  FGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN  288
                  +    +   + + +L   +G     +Q  +L      +  Q   ++A  +    
Sbjct  305  QVQYAYETFRTLQPGIPLMKL---YGRH---KQTSRLETTVKFSQAQHACLFATDIVARG  358

Query  289  DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPEN  348
                  D V  VD    +  + HR      +     + LL L    ++ +          
Sbjct  359  LDFPAIDWVIQVDCPEDVATYVHRVG-RSARFGRQGKSLLMLLPTEEDGMLKRMKVHKIE  417

Query  349  PKL  351
            PK+
Sbjct  418  PKM  420


>sp|Q5AK59|HAS1_CANAL ATP-dependent RNA helicase HAS1 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=HAS1 
PE=3 SV=1
Length=565

 Score = 82.2 bits (201),  Expect = 5e-15, Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 55/170 (32%), Gaps = 17/170 (10%)

Query  357  ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT  416
            +L      +   + I+F  +  S       L        +D+    L G           
Sbjct  344  LLFSFLKRNVKKKIIVFLSSCNSVKFYSELL------NYIDLPVLDLHG--------KQK  389

Query  417  QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR--  473
            Q+ +     +F +    +LV T VA  GLDIP  + +V++    +    +   GR AR  
Sbjct  390  QQKRTNTFFEFCNAKQGILVCTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGT  449

Query  474  ADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIR  523
              +       T       R L    +     +  A      Q++    I+
Sbjct  450  QGKGKSLMFLTPSELGFLRYLKAAKVPLNEYEFPANKIANIQSQLTKLIK  499


 Score = 54.0 bits (128),  Expect = 4e-06, Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 53/135 (39%), Gaps = 10/135 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA----AAYVAKRH-LETVDGAKVVVLVNRVHLVT  61
            Q + I P L G++++    TG+GKT A    A  +     ++  +G  V+++     L  
Sbjct  135  QAKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIELLYSLKIKPRNGTAVIIITPTRELAL  194

Query  62   QHGEEFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
            Q     R ++        +  G    R     LA+  +LL+ T   L   L + +     
Sbjct  195  QIFGVARELMQFHSQTCGIVIGGADRRQEATKLAKGVNLLVATPGRLLDHLKNTQ----F  250

Query  121  ELTVFSLIVVDECHH  135
              +    +V+DE   
Sbjct  251  VFSNLKALVIDEADR  265


>sp|Q8Z889|UVRB_SALTI UvrABC system protein B OS=Salmonella typhi 
OX=90370 GN=uvrB PE=3 SV=1
Length=673

 Score = 82.5 bits (202),  Expect = 5e-15, Method: Composition-based stats.
 Identities = 31/150 (21%), Positives = 62/150 (41%), Gaps = 29/150 (19%)

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R ++ T T++ A  L  +L++               G       + +   ++ E+I+ 
Sbjct  446  NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  + +  A 
Sbjct  492  LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI  551

Query  482  VATE----------GSRELKRELINEALET  501
            +  +          G  E +RE   +  E 
Sbjct  552  LYGDKITPSMAKAIGETERRREKQQKYNEE  581


>sp|A1STV6|UVRB_PSYIN UvrABC system protein B OS=Psychromonas 
ingrahamii (strain DSM 17664 / CCUG 51855 / 37) OX=357804 GN=uvrB 
PE=3 SV=1
Length=670

 Score = 82.5 bits (202),  Expect = 5e-15, Method: Composition-based stats.
 Identities = 32/181 (18%), Positives = 70/181 (39%), Gaps = 21/181 (12%)

Query  307  QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSN  366
            Q  Y     +  +I  ++  ++         L  +    P   +++ L   +  +     
Sbjct  388  QTIYVSATPSDYEINKSQGEIIRQVIRPTGLLDPVIEVRPVTTQVDDLLSEINIRLPLKE  447

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
              R ++ T T++ A  L  +L +               G       + +   ++ E+I+ 
Sbjct  448  --RVLVTTLTKRMAEDLTDYLHE--------------HGIKARYLHSDVNTVERVEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++L+  ++  EGLDIP  ++V          L +E S++Q  GRA  + +  A 
Sbjct  492  LRLGIFDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTMGRAARNLNGKAI  551

Query  482  V  482
            +
Sbjct  552  L  552


>sp|Q0UR48|HAS1_PHANO ATP-dependent RNA helicase HAS1 OS=Phaeosphaeria 
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) 
OX=321614 GN=HAS1 PE=3 SV=1
Length=610

 Score = 82.2 bits (201),  Expect = 5e-15, Method: Composition-based stats.
 Identities = 49/299 (16%), Positives = 99/299 (33%), Gaps = 44/299 (15%)

Query  253  FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHR  312
             G      +  KL++   L      R+   HL      +  +     +D    + +    
Sbjct  238  IGGANRRAEAEKLAKGVNLLIATPGRLLD-HLHNTQGFVFKNLKSLIIDEADRILEVGFE  296

Query  313  EHVTKTQILCAERRLLALFDD----RKNELAHLAT----------HGPENPKLEMLE---  355
            + +     +    R   LF      +  +LA ++           +  E+  +E LE   
Sbjct  297  DEMRSIIKILPTDRQTMLFSATQTTKVEDLARISLKAGPLYINVDYRKEHSTVEGLEQGY  356

Query  356  ---------KILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA  406
                     ++L          + I+F  +  S       L        +D+    L G 
Sbjct  357  VICDSDTRFRLLFSFLKKHQKKKVIVFFSSCNSVKFYAELL------NYIDLPVLELHG-  409

Query  407  GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV  466
                    + Q+ +     +F +     L+ T VA  GLDIP  + V+++    +    +
Sbjct  410  -------KLKQQARTNRFFEFCNAQSGTLICTDVAARGLDIPEVDWVIQFDPPDDPRDYI  462

Query  467  QARGRARAD--QSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMD-QAEYQAKI  522
               GR          + +    S     +L+ EA   L+E  + A + ++ Q++ +A I
Sbjct  463  HRVGRTARGSEGKGRSLMFLLPSEIGFLKLLKEARVPLVEFELPANKILNIQSQLEALI  521


 Score = 55.2 bits (131),  Expect = 2e-06, Method: Composition-based stats.
 Identities = 32/136 (24%), Positives = 53/136 (39%), Gaps = 11/136 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRH------LETVDGAKVVVLVNRVHLV  60
            Q + I P L GK+++    TG+GKT  A  +           +  +G  V+V+     L 
Sbjct  158  QRKAIPPLLSGKDVLGAAKTGSGKTL-AFLIPAIEMLSSMRFKPRNGTGVIVVSPTRELA  216

Query  61   TQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
             Q     R +++        + G    RA    LA+  +LLI T   L   L + +    
Sbjct  217  LQIFGVARELMEKHSQTFGIVIGGANRRAEAEKLAKGVNLLIATPGRLLDHLHNTQGFVF  276

Query  120  VELTVFSLIVVDECHH  135
              L     +++DE   
Sbjct  277  KNLKS---LIIDEADR  289


>sp|Q7NTA7|UVRB_CHRVO UvrABC system protein B OS=Chromobacterium 
violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / CCUG 
213 / NBRC 12614 / NCIMB 9131 / NCTC 9757 / MK) OX=243365 
GN=uvrB PE=3 SV=1
Length=670

 Score = 82.5 bits (202),  Expect = 5e-15, Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 79/200 (40%), Gaps = 22/200 (11%)

Query  346  PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
            P   +++ L   ++     +   R ++ T T++ A  L  +  +               G
Sbjct  431  PVATQVDDLLSEIRE--RMARGERVLVTTLTKRMAEQLADYYTE--------------HG  474

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLT  460
                   + +   ++ E+I+  + G  ++L+  ++  EGLDIP  ++V          L 
Sbjct  475  VKVRYLHSDIDTVERVEIIRDLRLGMFDVLIGINLLREGLDIPEVSLVAILDADKEGFLR  534

Query  461  NEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQ-AVAAVQKMDQAEYQ  519
            +E S++Q  GRA  +    A +  +   +  R+ ++E      +Q A  A   +     +
Sbjct  535  SERSLIQTIGRAARNLRGKALLYADRITDSMRKAMDETERRRAKQMAFNAEHGIVPKGVE  594

Query  520  AKIRDLQQAALTKRAAQAAQ  539
             KI+D+     +  A +   
Sbjct  595  KKIKDIIDGVYSVEAERKKL  614


>sp|Q1E7Y4|MAK5_COCIM ATP-dependent RNA helicase MAK5 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=MAK5 PE=3 SV=1
Length=783

 Score = 82.5 bits (202),  Expect = 5e-15, Method: Composition-based stats.
 Identities = 31/151 (21%), Positives = 59/151 (39%), Gaps = 18/151 (12%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            R ++FT +  +   L   LQ                     +  + M Q+ +   +++F 
Sbjct  502  RTLVFTNSISAVRRLTQLLQNLNLPTF--------------ALHSSMAQKARLRSVERFS  547

Query  429  DGTLN---LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVAT  484
              + +   +LVAT VA  GLDI   +++V Y +     + V   GR ARA  S  + +  
Sbjct  548  SLSSDPSSILVATDVAARGLDIKGIDLIVHYHIPRTADTYVHRSGRTARASASGKSILIC  607

Query  485  EGSRELKRELINEALETLMEQAVAAVQKMDQ  515
                      +   + +  + + A   KM++
Sbjct  608  APEETTGVARLVAKIHSNKKDSSATESKMEK  638


 Score = 40.6 bits (93),  Expect = 0.050, Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 49/142 (35%), Gaps = 24/142 (17%)

Query  15   LEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAK---------------VVVLVNRVH  58
            L+G ++I    TG+GKT A    + +  L    G +                ++L     
Sbjct  225  LQGHDVIGKASTGSGKTLAFGIPIVEYFLGKYRGGRAPTASEERESTKEPMALILSPTRE  284

Query  59   LVTQ---HGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP  114
            L  Q   H  +        +  + T++G +        L    D++I T   L   + S 
Sbjct  285  LAHQLNKHLTDLVNHAPNTQVRIATVTGGLSIYKQ-QRLLADADIIIATPGRLWEVVGSM  343

Query  115  EEEEHV-ELTVFSLIVVDECHH  135
                 + +L     +V+DE   
Sbjct  344  T--GFLSKLKKIRFLVIDEADR  363


>sp|P58174|UVRB_MYCPU UvrABC system protein B OS=Mycoplasmopsis 
pulmonis (strain UAB CTIP) OX=272635 GN=uvrB PE=3 SV=1
Length=657

 Score = 82.2 bits (201),  Expect = 6e-15, Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 83/198 (42%), Gaps = 21/198 (11%)

Query  309  FYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSP  368
             Y     ++ +I  A++++  +       L  +     +  ++E +   LQ+Q   + + 
Sbjct  387  IYISATPSEYEIEKADQKITKMIIRPTGLLDPIIETRSKTNQVEDIYDELQKQ--KAKNE  444

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            R +I T T++ +  L  + Q++              G   +   +     ++ E+++K +
Sbjct  445  RTLILTTTKRFSEELTRYFQEK--------------GEKVAYIHSDHKTFERNEILRKLR  490

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAFVA  483
             G  +L++  ++  EG+D+P  ++V+         L N  S++Q  GRA  + S      
Sbjct  491  KGVYDLVIGINLLREGIDLPEVSLVIILDADKESFLRNTKSLIQIVGRASRNSSGKVIFY  550

Query  484  TEGSRELKRELINEALET  501
             +   +  RE I +  E 
Sbjct  551  ADFVSKSMRETIEDNFEK  568


>sp|Q0DVX2|RH50_ORYSJ DEAD-box ATP-dependent RNA helicase 50 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os03g0108600 PE=2 
SV=2
Length=641

 Score = 82.2 bits (201),  Expect = 6e-15, Method: Composition-based stats.
 Identities = 35/169 (21%), Positives = 62/169 (37%), Gaps = 19/169 (11%)

Query  348  NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG  407
            + K   L KI++     S   + IIF    ++   +   L++     +  I+        
Sbjct  486  SNKKSALVKIIEE----SPVRKTIIFCNKIETCRKVENALRRVDRKAS-QIKVLPF----  536

Query  408  NSSQSTHMTQRDQQEVIQKF---QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
                   + Q+ +   I++F   Q      LV T  A  G+D  + N VV +    +   
Sbjct  537  ----HAALDQQQRIANIKEFLNKQTADSMFLVCTDRASRGIDFANVNHVVLFDYPRDPSE  592

Query  465  MVQARGRA--RADQSVYAFVATEGSR-ELKRELINEALETLMEQAVAAV  510
             V+  GR    A  +  AFV   G +  L R ++   ++      V  V
Sbjct  593  YVRRVGRTARGASGNGKAFVFAVGKQVSLARRVMERNIKGHPLHDVPCV  641


 Score = 56.3 bits (134),  Expect = 7e-07, Method: Composition-based stats.
 Identities = 71/409 (17%), Positives = 132/409 (32%), Gaps = 50/409 (12%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETV----------DGAKVVVLVNR  56
            Q     P LEGK+ II   +G+GKT A      ++L                +VVVL   
Sbjct  267  QAMAYRPVLEGKSCIIGDQSGSGKTLAYLCPVVQNLRKEEVEGLHRSSPRNPRVVVLTPT  326

Query  57   VHLVTQHGEEFRRMLDG--RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP  114
              L +Q     R +      +     +G    +     L +  D+LI T       L   
Sbjct  327  AELASQVLNNCRSISKSGVPFRSMVATGGFRQKTQLESLDQELDVLIATPGRFLYLL---  383

Query  115  EEEEHVELTVFSLIVVDECHHTHKDTVYNVI-MSQYLELKLQRAQPLPQVLGLTAS-PGT  172
             +E  V+L     +V+DE      D +Y      Q L   +  A    Q L +TA+ P  
Sbjct  384  -QEGFVQLNNLRCVVLDEV-----DILYGEESFEQVLHQLITVAPLTTQYLFVTATLPLD  437

Query  173  GGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQ-EHSQQPCKQYNLCHRRSQDPFGD  231
                           +    D   IM P       + E     C   +   +  +  F +
Sbjct  438  IYNKV----------VETFPDCELIMGPGVHRTSSRLEEILVDCSGDDNEEKNPETAFSN  487

Query  232  LLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDAL  291
                L+  I    E P           E    K+  A      +  ++           L
Sbjct  488  KKSALVKIIE---ESPVRKTIIFCNKIE-TCRKVENALRRVDRKASQI---------KVL  534

Query  292  LIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKL  351
              H  +     +A +++F +++      ++C +R    +     N +         +   
Sbjct  535  PFHAALDQQQRIANIKEFLNKQTADSMFLVCTDRASRGIDFANVNHVVLFDYPRDPS---  591

Query  352  EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRA  400
            E + ++ +    +S + +  +F   +Q + +  +  +  +G    D+  
Sbjct  592  EYVRRVGRTARGASGNGKAFVFAVGKQVSLARRVMERNIKGHPLHDVPC  640


>sp|P72174|UVRB_PSEAE UvrABC system protein B OS=Pseudomonas aeruginosa 
(strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 
14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=uvrB PE=3 
SV=2
Length=670

 Score = 82.2 bits (201),  Expect = 6e-15, Method: Composition-based stats.
 Identities = 34/180 (19%), Positives = 73/180 (41%), Gaps = 20/180 (11%)

Query  365  SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI  424
            +   R ++ T T++ A  L  +L         D+R + L         + +   ++ E+I
Sbjct  442  AKDERVLVTTLTKRMAEDLTDYLGDH------DVRVRYL--------HSDIDTVERVEII  487

Query  425  QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVY  479
            +  + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  +    
Sbjct  488  RDLRAGAFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLHGK  547

Query  480  AFVATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA  538
            A +  +  +  ++R +         + A      +     +  I+D+ + A+   A    
Sbjct  548  AILYADNVTGSMQRAIDETERRRAKQIAFNEAHGIVPKGVRKDIKDILEGAVVPGARGKR  607


 Score = 37.5 bits (85),  Expect = 0.43, Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 26/75 (35%), Gaps = 9/75 (12%)

Query  8   WEVIMPALEGKNIIIWLPTGAGKTR-AAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEE  66
            E +   L  + ++    TG+GKT   A  +A+           +VL     L  Q   E
Sbjct  24  VEGLEAGLSHQTLLGV--TGSGKTFSIANVIAQV------QRPTLVLAPNKTLAAQLYGE  75

Query  67  FRRMLDGRWTVTTLS  81
           F+           +S
Sbjct  76  FKTFFPHNSVEYFVS  90


>sp|P56996|UVRB_NEIMA UvrABC system protein B OS=Neisseria meningitidis 
serogroup A / serotype 4A (strain DSM 15465 / Z2491) 
OX=122587 GN=uvrB PE=3 SV=1
Length=675

 Score = 82.2 bits (201),  Expect = 6e-15, Method: Composition-based stats.
 Identities = 30/189 (16%), Positives = 74/189 (39%), Gaps = 20/189 (11%)

Query  365  SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI  424
                R ++ T T++ A  L  +  +              +G       + +   ++ E+I
Sbjct  449  QKGERVLVTTLTKRMAEQLTDYYSE--------------LGIKVRYLHSDIDTVERVEII  494

Query  425  QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVY  479
            +  + G  ++LV  ++  EGLDIP  ++V          L +  S++Q  GRA  + +  
Sbjct  495  RDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAARNVNGV  554

Query  480  AFVATEGSRELKRELINEALETLMEQ-AVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA  538
            A +  +   +  +  I+E      +Q        +   + + +++D+      +  +   
Sbjct  555  AILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEEDSGKG  614

Query  539  QRENQRQQF  547
            +R+ + +  
Sbjct  615  RRQGKNKVK  623


>sp|B2VBW9|UVRB_ERWT9 UvrABC system protein B OS=Erwinia tasmaniensis 
(strain DSM 17950 / CFBP 7177 / CIP 109463 / NCPPB 4357 
/ Et1/99) OX=465817 GN=uvrB PE=3 SV=1
Length=674

 Score = 82.2 bits (201),  Expect = 6e-15, Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 70/185 (38%), Gaps = 20/185 (11%)

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R ++   T++ A  L  +L +               G       + +   ++ E+I+ 
Sbjct  446  NERVLVTVLTKRMAEDLTEYLTE--------------HGERVRYLHSDIDTVERVEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  + +  A 
Sbjct  492  LRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAI  551

Query  482  VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR  540
            +  +  +  + R +         +Q       +       KI D+ +        +A  R
Sbjct  552  LYGDKITPSMARAIGETERRREKQQLHNEEHGIVPQGLNKKISDILELGQGLAKNKAKPR  611

Query  541  ENQRQ  545
              + +
Sbjct  612  NMKGR  616


>sp|B5XYX2|UVRB_KLEP3 UvrABC system protein B OS=Klebsiella pneumoniae 
(strain 342) OX=507522 GN=uvrB PE=3 SV=1
Length=673

 Score = 82.2 bits (201),  Expect = 6e-15, Method: Composition-based stats.
 Identities = 31/150 (21%), Positives = 61/150 (41%), Gaps = 29/150 (19%)

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R ++ T T++ A  L  +L++               G       + +   ++ E+I+ 
Sbjct  446  NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  + +  A 
Sbjct  492  LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNINGKAI  551

Query  482  VATE----------GSRELKRELINEALET  501
            +  +          G  E +RE      E 
Sbjct  552  LYGDKITPSMAKAIGETERRREKQQRYNEE  581


>sp|P47319|UVRB_MYCGE UvrABC system protein B OS=Mycoplasma genitalium 
(strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37) 
OX=243273 GN=uvrB PE=3 SV=1
Length=656

 Score = 82.2 bits (201),  Expect = 6e-15, Method: Composition-based stats.
 Identities = 41/260 (16%), Positives = 94/260 (36%), Gaps = 34/260 (13%)

Query  307  QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSN  366
            +  Y        +I  ++  ++         +  +    P++ ++E L + +  Q    N
Sbjct  391  KVIYVSATPRDKEISLSQNNVIEQLVRPTYLVDPIIVVKPKDNQVEDLIEEIINQ--RQN  448

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R  +   T + A +L  +L++++      I+   +           +   ++  +I  
Sbjct  449  NTRTFVTVLTIKMAENLTEYLKERK------IKVAYI--------HKDIKALERLLLIND  494

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G    LV  ++  EGLD+P   +V  +      L  +E S++Q  GRA  ++     
Sbjct  495  LRRGEYECLVGINLLREGLDVPEVALVCIFDADIPGLPRDERSLIQIIGRAARNEHGRVV  554

Query  482  VATEG---------SRELKRELINEALETLMEQAVAAVQK----MDQAEYQAKIRDLQQA  528
            +                 +R  +      L  +    V K    +   + +AK    + A
Sbjct  555  MYANHVTEQMQKAIDETKRRRTVQMEYNKLHNKTPKTVVKPLTFVQPIKLKAKSNAEKNA  614

Query  529  ALTKRAAQAAQRENQRQQFP  548
            AL K+  +  ++    Q + 
Sbjct  615  ALIKQLTKEMKKAAANQNYE  634


>sp|E7F8F4|ASCC3_DANRE Activating signal cointegrator 1 complex 
subunit 3 OS=Danio rerio OX=7955 GN=ascc3 PE=3 SV=2
Length=1534

 Score = 82.5 bits (202),  Expect = 7e-15, Method: Composition-based stats.
 Identities = 42/177 (24%), Positives = 73/177 (41%), Gaps = 20/177 (11%)

Query  7    QWEVIMPALE-GKNIIIWLPTGAGKTRAAAYVAKRHLET---------VDGAKVVVLVNR  56
            Q  V   A    +N++I  PTGAGKT  A       +            D  K+V +   
Sbjct  78   QSIVFETAYNTNENLLICAPTGAGKTNIAMLTILHEIRQHLQPGGVIRKDQFKIVYVAPM  137

Query  57   VHLVTQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE  115
              L  +    F + L+     V  L+GDM    G         +L+ T E     + + +
Sbjct  138  KALAAEMTNYFSKRLEPLGIAVKELTGDMQLTKGE---ILRTQMLVTTPEKW--DVVTRK  192

Query  116  EEEHVELTVFS-LIVVDECH--HTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS  169
                V L+    L+++DE H  H  +  V   ++++ L   ++  Q + ++LGL+A+
Sbjct  193  SVGDVALSQVVRLLILDEVHLLHEDRGPVLESLVARTLRQ-VESTQSMIRILGLSAT  248


 Score = 69.4 bits (168),  Expect = 9e-11, Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 60/152 (39%), Gaps = 8/152 (5%)

Query  19    NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEE--FRRMLDGRWT  76
             N+++  PTG+GKT AA     R       +KVV +     LV +  E+   R        
Sbjct  906   NVLLGAPTGSGKTIAAEMAIFRVFNMYPTSKVVYIAPLKALVRERIEDWKIRIEEKLGRK  965

Query  77    VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHT  136
             V  L+GD  P           DL++ T E       S +   +V+    +++++DE H  
Sbjct  966   VVELTGDNTPDM---RAIAQADLIVTTPEKWDGVSRSWQNRSYVQ--KVAILIIDEIHLL  1020

Query  137   HKD-TVYNVIMSQYLELKLQRAQPLPQVLGLT  167
              +D      ++               +V+GL+
Sbjct  1021  GEDRGPVLEVIVSRTNFISSHTSKTVRVVGLS  1052


 Score = 44.4 bits (103),  Expect = 0.005, Method: Composition-based stats.
 Identities = 33/175 (19%), Positives = 66/175 (38%), Gaps = 34/175 (19%)

Query  357   ILQRQFSSSNSPRGIIFT----RTRQSAHSLLLWLQQQQGLQ-------------TVDIR  399
             + Q   + S +   +IF     +TR +A  L+ +L  +   +                IR
Sbjct  1107  VFQAIRTHSPAKPVLIFVSSRRQTRLTALDLIAFLATEDDPKQWLHQDEREMTDIIATIR  1166

Query  400   AQLL---IGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVR-  455
                L   +  G       + +RD++ V + F +  + +L+ATS    G++ P   V+V+ 
Sbjct  1167  ESNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKIQVLIATSTLAWGVNFPAHLVIVKG  1226

Query  456   ---YG-LLTNEISM-----VQARGRARA----DQSVYAFVATEGSRELKRELINE  497
                Y       +       +Q  GRA      DQ     +  +  ++  ++ + E
Sbjct  1227  TEYYDGKTRRYVDYPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFYKKFLYE  1281


>sp|O73946|HELS_PYRFU ATP-dependent DNA helicase Hel308 OS=Pyrococcus 
furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / 
Vc1) OX=186497 GN=hel308 PE=1 SV=1
Length=720

 Score = 82.2 bits (201),  Expect = 7e-15, Method: Composition-based stats.
 Identities = 42/170 (25%), Positives = 65/170 (38%), Gaps = 14/170 (8%)

Query  7    QWEVIMPA-LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE  65
            Q E +    LEGKN +I +PT +GKT  A       +    G K V +V    L  +  +
Sbjct  28   QAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRI-LTQGGKAVYIVPLKALAEEKFQ  86

Query  66   EFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF  125
            EF+        V   +GD   +  +      +D++I TAE     L          +   
Sbjct  87   EFQDWEKIGLRVAMATGDYDSKDEW---LGKYDIIIATAEKFDSLL----RHGSSWIKDV  139

Query  126  SLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGA  175
             ++V DE H               LE+ L       Q++GL+A+ G    
Sbjct  140  KILVADEIHLIGSRD-----RGATLEVILAHMLGKAQIIGLSATIGNPEE  184


 Score = 44.0 bits (102),  Expect = 0.004, Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 58/168 (35%), Gaps = 32/168 (19%)

Query  370  GIIFTRTRQSAHSLLLWLQQQQG--LQTVDIRA-----------------QLLIGAGNSS  410
             +IF   R+ A  + L L ++    L   +IRA                    I  G + 
Sbjct  240  ALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAF  299

Query  411  QSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVR-------YGLLTNEI  463
                + + ++  V + F+ G +  +VAT     G++ P   V++R       +G+    I
Sbjct  300  HHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPI  359

Query  464  SMVQAR-GRARAD-----QSVYAFVATEGSRELKRELINEALETLMEQ  505
              V    GRA                ++  RE+    I    E L  Q
Sbjct  360  IEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREVMNHYIFGKPEKLFSQ  407


>sp|Q5F931|UVRB_NEIG1 UvrABC system protein B OS=Neisseria gonorrhoeae 
(strain ATCC 700825 / FA 1090) OX=242231 GN=uvrB PE=3 
SV=1
Length=675

 Score = 82.2 bits (201),  Expect = 7e-15, Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 74/189 (39%), Gaps = 20/189 (11%)

Query  365  SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI  424
                R ++ T T++ A  L  +  +              +G       + +   ++ E+I
Sbjct  449  QKGERVLVTTLTKRMAEQLTDYYSE--------------LGIKVRYLHSDIDTVERVEII  494

Query  425  QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVY  479
            +  + G  ++LV  ++  EGLDIP  ++V          L +  S++Q  GRA  + +  
Sbjct  495  RDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAARNVNGV  554

Query  480  AFVATEGSRELKRELINEALETLMEQ-AVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA  538
            A +  +   +  +  ++E      +Q        +   + + +++D+      +  +   
Sbjct  555  AILYADKITDSMKAAVDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEEDSGKG  614

Query  539  QRENQRQQF  547
            +R+ + +  
Sbjct  615  RRQGKNKVK  623


>sp|Q829Y6|UVRB_STRAW UvrABC system protein B OS=Streptomyces 
avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NBRC 
14893 / NCIMB 12804 / NRRL 8165 / MA-4680) OX=227882 GN=uvrB 
PE=3 SV=1
Length=713

 Score = 82.2 bits (201),  Expect = 7e-15, Method: Composition-based stats.
 Identities = 32/190 (17%), Positives = 71/190 (37%), Gaps = 20/190 (11%)

Query  363  SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE  422
             +    R ++ T T++ A  L  +  +              +G       + +    + E
Sbjct  449  RTEKDERVLVTTLTKKMAEDLTDYFLE--------------LGIQVRYLHSDVDTLRRVE  494

Query  423  VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQS  477
            ++++ + G  ++LV  ++  EGLD+P  ++V          L +  S++Q  GRA  + S
Sbjct  495  LLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAARNVS  554

Query  478  VYAFVATEGSRELKRELINEALETLMEQ-AVAAVQKMDQAEYQAKIRDLQQAALTKRAAQ  536
                +  +       + I+E      +Q A    + +D    + KI D+      +    
Sbjct  555  GQVHMYADKITPAMEKAIDETNRRREKQVAYNKEKGIDPQPLRKKINDIVAQIAREDIDT  614

Query  537  AAQRENQRQQ  546
                 +  +Q
Sbjct  615  EQLLGSGYRQ  624


>sp|Q8CK11|UVRB_STRCO UvrABC system protein B OS=Streptomyces 
coelicolor (strain ATCC BAA-471 / A3(2) / M145) OX=100226 GN=uvrB 
PE=3 SV=1
Length=712

 Score = 82.2 bits (201),  Expect = 7e-15, Method: Composition-based stats.
 Identities = 32/190 (17%), Positives = 70/190 (37%), Gaps = 20/190 (11%)

Query  363  SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE  422
             +    R ++ T T++ A  L  +  +              +G       + +    + E
Sbjct  449  RTEKDERVLVTTLTKKMAEDLTDYFVE--------------LGIQVRYLHSDVDTLRRVE  494

Query  423  VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQS  477
            ++++ + G  ++LV  ++  EGLD+P  ++V          L +  S++Q  GRA  + S
Sbjct  495  LLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAARNVS  554

Query  478  VYAFVATEGSRELKRELINEALETLMEQ-AVAAVQKMDQAEYQAKIRDLQQAALTKRAAQ  536
                +  +       + I+E      +Q A      +D    + KI D+      +    
Sbjct  555  GQVHMYADKITPAMEKAIDETNRRREKQVAFNKANGVDPQPLRKKINDIVAQIAREDVDT  614

Query  537  AAQRENQRQQ  546
                 +  +Q
Sbjct  615  EQLLGSGYRQ  624


>sp|Q6FPT7|DBP4_CANGA ATP-dependent RNA helicase DBP4 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DBP4 PE=3 SV=1
Length=765

 Score = 82.2 bits (201),  Expect = 7e-15, Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 67/199 (34%), Gaps = 25/199 (13%)

Query  314  HVTKTQILCAERRLLALFDDRKNELAHLATHGPENPK----------LEMLEKILQRQFS  363
              T++Q +    RL +L D +K      +  GP  PK          L     +L     
Sbjct  225  SATQSQSISDLARL-SLTDYKKIGTIDSSEDGPATPKTLQQSYIIADLADKLDVLYSFIK  283

Query  364  SSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEV  423
            S    + I+F  + +  H +    ++ Q             G           QR + E 
Sbjct  284  SHLKTKMIVFFSSSKQVHFVYETFRKMQP------------GISLLHLHGRQKQRARTET  331

Query  424  IQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYA-F  481
            + KF       L AT V   G+D P  + V++     +  + +   GR AR  +   +  
Sbjct  332  LDKFFRAQQVCLFATDVVARGIDFPAVDWVIQVDCPEDVDTYIHRVGRAARYGKKGRSLI  391

Query  482  VATEGSRELKRELINEALE  500
            + T         +  + +E
Sbjct  392  ILTPQEEAFLTRMAAKKIE  410


 Score = 44.8 bits (104),  Expect = 0.003, Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 48/142 (34%), Gaps = 10/142 (7%)

Query  1    MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAY------VAKRHLETVDGAKVVVLV  54
            +++   Q + I+ +L+G ++     TG+GKT  A        + +      DG   +++ 
Sbjct  62   IKMTDIQRDSIVTSLQGHDVFGTAKTGSGKTL-AFLVPVLEKLYRERWTEFDGLGALIIS  120

Query  55   NRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP  114
                L  Q  E   ++         L                 ++LI T   +   +   
Sbjct  121  PTRELAMQIYEVLVKIGSHTQFSAGLVIGGKDVNFELERIAKINILIGTPGRILQHMDQA  180

Query  115  EEEEHVELTVFSLIVVDECHHT  136
                 +  +   ++V+DE    
Sbjct  181  VG---LNTSNLQMLVLDEADRC  199


>sp|Q50939|UVRB_NEIGO UvrABC system protein B OS=Neisseria gonorrhoeae 
OX=485 GN=uvrB PE=3 SV=1
Length=675

 Score = 81.8 bits (200),  Expect = 8e-15, Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 74/189 (39%), Gaps = 20/189 (11%)

Query  365  SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI  424
                R ++ T T++ A  L  +  +              +G       + +   ++ E+I
Sbjct  449  QKGERVLVTTLTKRMAEQLTDYYSE--------------LGIKVRYLHSDIDTVERVEII  494

Query  425  QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVY  479
            +  + G  ++LV  ++  EGLDIP  ++V          L +  S++Q  GRA  + +  
Sbjct  495  RDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAARNVNGV  554

Query  480  AFVATEGSRELKRELINEALETLMEQ-AVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA  538
            A +  +   +  +  ++E      +Q        +   + + +++D+      +  +   
Sbjct  555  AILYADKITDSMKAAVDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEEDSGKG  614

Query  539  QRENQRQQF  547
            +R+ + +  
Sbjct  615  RRQGKNKVK  623


>sp|E1BNG3|ASCC3_BOVIN Activating signal cointegrator 1 complex 
subunit 3 OS=Bos taurus OX=9913 GN=ascc3 PE=3 SV=1
Length=2201

 Score = 82.5 bits (202),  Expect = 8e-15, Method: Composition-based stats.
 Identities = 41/176 (23%), Positives = 73/176 (41%), Gaps = 19/176 (11%)

Query  7    QWEVIMPALE-GKNIIIWLPTGAGKTRAAAYVAKRHLET--------VDGAKVVVLVNRV  57
            Q  V   A    +N++I  PTGAGKT  A       +           +  K+V +    
Sbjct  481  QSIVFETAYNTNENMLICAPTGAGKTNIAMLTVLHEIRQHFQQGVIKKNEFKIVYVAPMK  540

Query  58   HLVTQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE  116
             L  +    F + L+     V  L+GDM       +      +L+ T E     + + + 
Sbjct  541  ALAAEMTNYFSKRLEPLGIVVKELTGDMQLS---KNEILRTQMLVTTPEKW--DVVTRKS  595

Query  117  EEHVELTVFS-LIVVDECH--HTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS  169
               V L+    L+++DE H  H  +  V   I+++ L   ++  Q + ++LGL+A+
Sbjct  596  VGDVALSQIVKLLILDEVHLLHEDRGPVLESIVARTLRQ-VESTQSMIRILGLSAT  650


 Score = 69.1 bits (167),  Expect = 1e-10, Method: Composition-based stats.
 Identities = 54/303 (18%), Positives = 99/303 (33%), Gaps = 15/303 (5%)

Query  19    NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEE--FRRMLDGRWT  76
             N+++  PTG+GKT AA     R       +K V +     LV +  ++   R        
Sbjct  1344  NVLLGAPTGSGKTVAAELAIFRVFNKYPTSKAVYIAPLKALVRERMDDWKVRIEEKLGKK  1403

Query  77    VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECH-H  135
             V  L+GD+ P           DL++ T E       S +   +V+    +++++DE H  
Sbjct  1404  VIELTGDVTPDM---KSIAKADLIVTTPEKWDGVSRSWQNRNYVK--QVTILIIDEIHLL  1458

Query  136   THKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTW  195
               +      ++           +   +++GL  S     A  L   +N       N    
Sbjct  1459  GEERGPVLEVIVSRTNFISSHTEKPVRIVGL--STALANARDLADWLNIRQMGLFNFRPS  1516

Query  196   CIMSPQNCCPQLQE---HSQQPCKQYNLCHR--RSQDPFGDLLKKLMDQIHDHLEMPELS  250
                 P     Q      +  +         +  RS  P   +L  +  +    L   EL 
Sbjct  1517  VRPVPLEVHIQGFPGQHYCPRMASMNKPTFQAIRSHSPAKPVLIFVSSRRQTRLTALELI  1576

Query  251   RKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFY  310
                 T+   +Q + + E      +   R   L L       + H  +   D     + F 
Sbjct  1577  AFLATEEDPKQWLNMDEREMENIIGTIRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFV  1636

Query  311   HRE  313
             + +
Sbjct  1637  NCK  1639


 Score = 44.8 bits (104),  Expect = 0.003, Method: Composition-based stats.
 Identities = 32/171 (19%), Positives = 64/171 (37%), Gaps = 38/171 (22%)

Query  363   SSSNSPRGIIFT----RTRQSAHSLLLWLQQQQGL----------------QTVDIRAQL  402
             S S +   +IF     +TR +A  L+ +L  ++                     D   +L
Sbjct  1551  SHSPAKPVLIFVSSRRQTRLTALELIAFLATEEDPKQWLNMDEREMENIIGTIRDSNLKL  1610

Query  403   LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV--------  454
              +  G       + +RD++ V + F +  + +L+ATS    G++ P   V++        
Sbjct  1611  TLAFGIGMHHAGLHERDRKTVEELFVNCKIQVLIATSTLAWGVNFPAHLVIIKGTEYYDG  1670

Query  455   ---RY-GLLTNEISMVQARGRARA----DQSVYAFVATEGSRELKRELINE  497
                RY         ++Q  GRA      DQ     +  +  ++  ++ + E
Sbjct  1671  KTRRYVDFPIT--DVLQMMGRAGRPQFDDQGKAVILVHDIKKDFYKKFLYE  1719


>sp|F1NTD6|ASCC3_CHICK Activating signal cointegrator 1 complex 
subunit 3 OS=Gallus gallus OX=9031 GN=ascc3 PE=3 SV=2
Length=2211

 Score = 82.5 bits (202),  Expect = 8e-15, Method: Composition-based stats.
 Identities = 44/176 (25%), Positives = 74/176 (42%), Gaps = 19/176 (11%)

Query  7    QWEVIMPALE-GKNIIIWLPTGAGKTRAAAYVAKRHLET--------VDGAKVVVLVNRV  57
            Q  V   A    +N++I  PTGAGKT  A       +           D  K+V +    
Sbjct  490  QSIVFETAYNTNENMLICAPTGAGKTNIAMLTVLHEIRQHVQHGVIKKDEFKIVYVAPMK  549

Query  58   HLVTQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE  116
             L  +    F + L+    TV  L+GDM    G         +L+ T E     + + + 
Sbjct  550  ALAAEMTNYFSKRLEPLGITVKELTGDMQLSKGE---ILRTQMLVTTPEKW--DVVTRKS  604

Query  117  EEHVELTVFS-LIVVDECH--HTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS  169
               V L+    L+++DE H  H  +  V   I+++ L   ++  Q + ++LGL+A+
Sbjct  605  VGDVALSQLVKLLILDEVHLLHEDRGPVLESIVARTLRQ-VESTQSMIRILGLSAT  659


 Score = 72.1 bits (175),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 57/303 (19%), Positives = 101/303 (33%), Gaps = 15/303 (5%)

Query  19    NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEE--FRRMLDGRWT  76
             N+++  PTG+GKT AA     R       +K V +     LV +  E+   R        
Sbjct  1353  NVLLGAPTGSGKTVAAELAIFRVFNKYPTSKAVYIAPLKALVRERIEDWKVRIEEKLGKK  1412

Query  77    VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHT  136
             V  L+GD+ P           DL++ T E       S +   +V+    S++++DE H  
Sbjct  1413  VVELTGDVTPDM---RAIAQADLIVTTPEKWDGVSRSWQNRSYVQ--KVSILIIDEIHLL  1467

Query  137   H-KDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTW  195
               +      ++           +   +V+GL  S     A  L   +N       N    
Sbjct  1468  GDERGPVLEVIVSRTNFISSHTEKPVRVVGL--STALANARDLADWLNINQMGLFNFRPS  1525

Query  196   CIMSPQNCCPQLQE---HSQQPCKQYNLCHR--RSQDPFGDLLKKLMDQIHDHLEMPELS  250
                 P     Q      +  +  +      +  RS  P   +L  +  +    L   +L 
Sbjct  1526  VRPVPLEVHIQGFPGQHYCPRMARMNKPAFQAIRSHSPAKPVLIFVSSRRQTRLTSLDLI  1585

Query  251   RKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFY  310
                 T+   +Q +K+ E      +   R   L L       + H  +   D     + F 
Sbjct  1586  AFLATEDDPKQWLKMDEREMNDIIGTVRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFV  1645

Query  311   HRE  313
             + +
Sbjct  1646  NCK  1648


 Score = 46.7 bits (109),  Expect = 0.001, Method: Composition-based stats.
 Identities = 42/265 (16%), Positives = 85/265 (32%), Gaps = 50/265 (19%)

Query  363   SSSNSPRGIIFT----RTRQSAHSLLLWLQQQQGL----------------QTVDIRAQL  402
             S S +   +IF     +TR ++  L+ +L  +                      D   +L
Sbjct  1560  SHSPAKPVLIFVSSRRQTRLTSLDLIAFLATEDDPKQWLKMDEREMNDIIGTVRDSNLKL  1619

Query  403   LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVR----YG-  457
              +  G       + +RD++ V + F +  + +L+ATS    G++ P   V+V+    Y  
Sbjct  1620  TLAFGIGMHHAGLHERDRKTVEELFVNCKIQVLIATSTLAWGVNFPAHLVIVKGTEYYDG  1679

Query  458   LLTNEISM-----VQARGRARA----DQSVYAFVATEGSRELKRELINEALE--------  500
                  +       +Q  GRA      DQ     +  +  ++  ++ + E           
Sbjct  1680  KTRRYVDYPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFYKKFLYEPFPVESSLLDV  1739

Query  501   -------TLMEQAVAAVQK-MDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHV  552
                     +    + + Q  MD   +    R L            +     +    +   
Sbjct  1740  LADHLNAEIAAGTITSKQDAMDYITWTYFFRRLIMNPTYYNLDNVSHDTMNKYLSSLVEK  1799

Query  553   QLLCINCMVAVGHGSDLRKVEGTHH  577
              L  + C   +  G D R +E   +
Sbjct  1800  SLFDLECSYCIEIGEDNRTIEPLTY  1824


 Score = 39.0 bits (89),  Expect = 0.21, Method: Composition-based stats.
 Identities = 41/247 (17%), Positives = 84/247 (34%), Gaps = 51/247 (21%)

Query  249  LSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALA----  304
            ++RK    +   Q+VKL     +  L E R   L          +  T   +  L     
Sbjct  600  VTRKSVGDVALSQLVKLLILDEVHLLHEDRGPVLESIVARTLRQVESTQSMIRILGLSAT  659

Query  305  -----ALQDFYHREHVTKTQILCAERRLLALFD--------DRKNELAHLATHGPENPKL  351
                  +  F H           +  R + L          ++  +L H+     EN   
Sbjct  660  LPNYLDVATFLHVNPYIGLFYFDSRFRPVPLGQTFIGIKTTNKVQQLNHMDEVCYEN---  716

Query  352  EMLEKILQRQFSSSNSPRGIIFTR----TRQSAHSLLLWLQQQQGL--------------  393
             +L++I+          + ++F      T ++A +L    +    +              
Sbjct  717  -VLKQIMAGH-------QVMVFVHARNATVRTAMALREKAKNNGHICHFLSPQGSDYGQA  768

Query  394  -----QTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIP  448
                 ++ + + + L   G S     M ++D+  V   F +G + +LV T+    G+++P
Sbjct  769  EKQVQRSRNKQLRELFPDGFSIHHAGMLRQDRSLVENLFSNGHIKVLVCTATLAWGVNLP  828

Query  449  HCNVVVR  455
               VV++
Sbjct  829  AHAVVIK  835


>sp|P37954|UVRB_BACSU UvrABC system protein B OS=Bacillus subtilis 
(strain 168) OX=224308 GN=uvrB PE=1 SV=2
Length=661

 Score = 81.8 bits (200),  Expect = 8e-15, Method: Composition-based stats.
 Identities = 33/175 (19%), Positives = 70/175 (40%), Gaps = 20/175 (11%)

Query  365  SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI  424
              + R ++ T T++ +  L  +L++              IG   +   + +   ++ E+I
Sbjct  443  ERNERVLVTTLTKKMSEDLTDYLKE--------------IGIKVNYLHSEIKTLERIEII  488

Query  425  QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVY  479
            +  + G  ++LV  ++  EGLDIP  ++V          L +E S++Q  GRA  +    
Sbjct  489  RDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAEGR  548

Query  480  AFVATEGSRELKRELINE-ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKR  533
              +  +   +     INE       ++       +       +IRD+ +A +   
Sbjct  549  VIMYADKITKSMEIAINETKRRREQQERFNEEHGITPKTINKEIRDVIRATVAAE  603


>sp|A3GGE9|DBP4_PICST ATP-dependent RNA helicase DBP4 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=DBP4 PE=3 SV=2
Length=765

 Score = 82.2 bits (201),  Expect = 8e-15, Method: Composition-based stats.
 Identities = 33/178 (19%), Positives = 56/178 (31%), Gaps = 20/178 (11%)

Query  331  FDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQ  390
                   L       P + KL++L   ++         + ++F  + +         +  
Sbjct  260  VSATPESLDQYYIRIPLDEKLDVLWSFIKSHLK----SKILVFFSSSKQVQYAYETFRTL  315

Query  391  QGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHC  450
            Q             G           Q  + E   KF       L AT +   GLD P  
Sbjct  316  QP------------GISLLKLYGRHKQTSRLETTVKFTQAQYACLFATDIVARGLDFPAI  363

Query  451  NVVVRYGLLTNEISMVQARGRA----RADQSVYAFVATEGSRELKRELINEALETLME  504
            + VV+     + ++ V   GRA    R  +S+   + +E    LKR   N+     M 
Sbjct  364  DWVVQVDCPEDAVTYVHRVGRAARFGRQGKSLLMLLPSEEEGMLKRLENNKIEPKFMN  421


 Score = 63.7 bits (153),  Expect = 4e-09, Method: Composition-based stats.
 Identities = 56/369 (15%), Positives = 108/369 (29%), Gaps = 35/369 (9%)

Query  1    MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAY------VAKRHLETVDGAKVVVLV  54
            M L   Q + I  AL+G++++    TG+GKT  A        + +  +   DG   +++ 
Sbjct  68   MSLTDIQKKTIPIALKGEDLMGTARTGSGKTL-AFLIPVVESLIRNKITEHDGLAALIVS  126

Query  55   NRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP  114
                L  Q  E   ++         L                 ++L+ T   +   L   
Sbjct  127  PTRELAVQTFEVLTKIGKYNTFSAGLVTGGKDVQYEKERVSRMNILVGTPGRISQHLNEA  186

Query  115  EEEEHVELTVFSLIVVDECHHT------------HKDTVYNVIMSQYLELKLQRAQPLPQ  162
                 +E +   ++V+DE                            +        + L +
Sbjct  187  VG---METSNLQVLVLDEADRCLDMGFKKQIDNIVGHLPPTRQTLLFSATVSDSVKDLAR  243

Query  163  VLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCH  222
             L LT     G +S  D     V     +LD + I  P +    +     +   +  +  
Sbjct  244  -LSLTNPKRIGVSSDQD-----VSATPESLDQYYIRIPLDEKLDVLWSFIKSHLKSKILV  297

Query  223  RRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYAL  282
              S         +    +   + + +L   +G     +Q  +L         Q   ++A 
Sbjct  298  FFSSSKQVQYAYETFRTLQPGISLLKL---YGRH---KQTSRLETTVKFTQAQYACLFAT  351

Query  283  HLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLA  342
             +          D V  VD       + HR      +     + LL L    +  +    
Sbjct  352  DIVARGLDFPAIDWVVQVDCPEDAVTYVHRVG-RAARFGRQGKSLLMLLPSEEEGMLKRL  410

Query  343  THGPENPKL  351
             +    PK 
Sbjct  411  ENNKIEPKF  419


>sp|Q58969|Y1574_METJA Uncharacterized ATP-dependent helicase 
MJ1574 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / 
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ1574 
PE=3 SV=1
Length=684

 Score = 81.8 bits (200),  Expect = 8e-15, Method: Composition-based stats.
 Identities = 32/161 (20%), Positives = 73/161 (45%), Gaps = 18/161 (11%)

Query  352  EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ  411
            ++L ++++      N+ + ++F  TR+    L+ +L   +    +            S+ 
Sbjct  263  QLLRRLIENL--VDNNIKTLVFFDTRKETEKLMRFLLNSKVFYKL------------STY  308

Query  412  STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI-SMVQARG  470
               + +  ++E+ +KF++G +  L+ T+  E G+DI   + V+ YG+  + I S++Q  G
Sbjct  309  KGTLPKYVREEIEEKFKNGEILALLTTNALELGIDIGDLDAVINYGIPPDGIFSLIQRFG  368

Query  471  RARADQS---VYAFVATEGSRELKRELINEALETLMEQAVA  508
            RA            +  +G     +E +NE  E + +  + 
Sbjct  369  RAGRRDKEALNIIVLRKDGLDYYYKEHLNELYERIRKGIIE  409


 Score = 56.7 bits (135),  Expect = 5e-07, Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 67/177 (38%), Gaps = 8/177 (5%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEE  66
            Q + +      K++++   T +GK+         +  +    + +++     L+    E+
Sbjct  50   QVKALKYLYNKKDVVVTTSTASGKSEIFRLAIFDNFLSNPDDRYLLIYPTRALINNQYEK  109

Query  67   FR-------RMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
            F        ++ + R     L+GD+G       L    ++L  T ++L   +        
Sbjct  110  FSMENELFYKITNKRVKAEILTGDVGLEKRREILKDKPNVLFTTPDMLHYQILKNHNNYL  169

Query  120  VELTVFSLIVVDECHHTHKDTVYNVI-MSQYLELKLQRAQPLPQVLGLTASPGTGGA  175
              L    L+VVDE H        N++ + + L   L+R     Q+L L+A+      
Sbjct  170  WLLKNLKLLVVDELHVYRGVFGTNMVYVFKRLLKLLKRLNNNLQILCLSATLKNPKE  226


>sp|Q3B7N1|CHD1L_BOVIN Chromodomain-helicase-DNA-binding protein 
1-like OS=Bos taurus OX=9913 GN=CHD1L PE=2 SV=1
Length=897

 Score = 82.2 bits (201),  Expect = 8e-15, Method: Composition-based stats.
 Identities = 85/498 (17%), Positives = 156/498 (31%), Gaps = 91/498 (18%)

Query  1    MELRSYQWEVIM---PALEGKNIIIWLP-TGAGKT-RAAAYVAKRHLETVDGAKVVVLVN  55
            + LR YQ + +         +N  I     G GKT +  A          D    ++L  
Sbjct  46   IHLRPYQLQGVNWLAQCFHCQNGCILGDEMGLGKTCQTIALFIYLAGRLNDEGPFLILCP  105

Query  56   RVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARC---HDLLICTAELLQMALT  112
               L +   EE  R   G   VT  +GD   RA      +      +L+ T E+      
Sbjct  106  LSVL-SNWKEEMERFAPGLSCVT-YAGDKDKRACLQQDLKQESRFHVLLTTYEICLKD--  161

Query  113  SPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGT  172
                   ++   +S++VVDE H            S  L   L     +  +L LT +P  
Sbjct  162  ----ASFLKSFPWSVLVVDEAHRLKNQ-------SSLLHKTLSEFSVVFSLL-LTGTPIQ  209

Query  173  GGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDL  232
                +L   ++ V     +L +   +       Q                   +      
Sbjct  210  NSLQELYSLLSFV---EPDLFSKEQVEDFVQRYQ---------------DIEKESESASE  251

Query  233  LKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALL  292
            L KL+         P L R+   ++  +   K            Q+ Y   +   +    
Sbjct  252  LYKLLQ--------PFLLRRVKAEVATELPRKTEVVIYHGMSALQKKYYKAILMKDLDAF  303

Query  293  IHDTVRAV---DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENP  349
             ++T + V   + L+ L+      ++              L +               + 
Sbjct  304  ENETAKKVKLQNVLSQLRKCVDHPYLFDGVEPEPFEIGDHLIEA--------------SG  349

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            KL +L+K+L   F  S   R ++F++  Q    L  +L                 G    
Sbjct  350  KLHLLDKLLA--FLYSKGHRVLLFSQMTQMLDILQDYLD--------------YRGYSYE  393

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNL---LVATSVAEEGLDIPHCNVVVRYGLLTNEISMV  466
                 +   ++   I+ F  G   +   L++T     G+++   + V+ +    N  + +
Sbjct  394  RVDGSVRGEERHLAIKNF--GQQPIFTFLLSTRAGGVGMNLTAADTVIFFDSDFNPQNDL  451

Query  467  QARGRA---RADQSVYAF  481
            QA  RA     ++SV   
Sbjct  452  QAAARAHRIGQNKSVKVI  469


>sp|Q5ZJF6|DDX10_CHICK Probable ATP-dependent RNA helicase DDX10 
OS=Gallus gallus OX=9031 GN=DDX10 PE=2 SV=1
Length=875

 Score = 82.2 bits (201),  Expect = 8e-15, Method: Composition-based stats.
 Identities = 51/273 (19%), Positives = 87/273 (32%), Gaps = 47/273 (17%)

Query  301  DALAALQDFYHREHVTKTQILCAERRLLALFD----DRKNELAHLATHGPE----NPK--  350
            D    + D    + +        ++R   LF         +LA L+   PE    + K  
Sbjct  226  DEADRILDMGFADTMNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPEYVWVHEKAK  285

Query  351  ---------------LEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQT  395
                           L+    +L     S    + I+F  + +    L     + Q    
Sbjct  286  FSTPATLDQNYIVCELQHKINVLYSFLRSHLKKKSIVFFASCKEVQYLFRVFCKLQP---  342

Query  396  VDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVR  455
                     G    +      Q  + EV   F      +L AT +A  GLD P  N V++
Sbjct  343  ---------GLPVLALHGKQQQMKRMEVYTCFVRKKAAVLFATDIAARGLDFPAVNWVIQ  393

Query  456  YGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMD  514
            +    +  + +   GR AR  +   A +    S E         +E L ++ V   +   
Sbjct  394  FDCPEDANTYIHRVGRTARYKEGGEALLVLLPSEE------KGMVEQLAQRKVPVNEIKI  447

Query  515  QAEYQAKIRDLQQAALTKRAAQAAQRENQRQQF  547
              E   KI D+Q+      A     +E  ++ F
Sbjct  448  NPE---KITDIQKRMQAFLAQDQELKEKAQRCF  477


 Score = 58.3 bits (139),  Expect = 2e-07, Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 48/127 (38%), Gaps = 8/127 (6%)

Query  14   ALEGKNIIIWLPTGAGKTR---AAAYVAKRHLETV--DGAKVVVLVNRVHLVTQHGEEFR  68
            AL+GK+++    TG+GKT      A      L+    DG  V+++     L  Q  +  R
Sbjct  107  ALQGKDVLGAAKTGSGKTLAFIVPALELLYRLQWTSADGLGVLIISPTRELAFQTFKVLR  166

Query  69   RMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLI  128
            ++         L                 ++LICT   L   +   +E  +   +   ++
Sbjct  167  KVGKNHDFSAGLIIGGKDLKEESERIHHINMLICTPGRLLQHM---DETSYFYASDLQML  223

Query  129  VVDECHH  135
            ++DE   
Sbjct  224  ILDEADR  230


>sp|Q6AF52|UVRB_LEIXX UvrABC system protein B OS=Leifsonia xyli 
subsp. xyli (strain CTCB07) OX=281090 GN=uvrB PE=3 SV=1
Length=688

 Score = 81.8 bits (200),  Expect = 9e-15, Method: Composition-based stats.
 Identities = 34/204 (17%), Positives = 76/204 (37%), Gaps = 31/204 (15%)

Query  363  SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE  422
             +    R ++ T T++ A  L  +L +               G         +    + E
Sbjct  445  RAERDERVLVTTLTKKMAEELTDFLAEA--------------GVKVRYLHADVDTLRRVE  490

Query  423  VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQS  477
            ++ + + G  ++LV  ++  EGLD+P  ++V          L +  S++Q  GRA  + S
Sbjct  491  LLTELRSGVFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSTSLIQTIGRAARNVS  550

Query  478  VYAFVATEGSRELKRELINEALETLMEQAVAAVQ-----KMDQAEYQAKIRDLQQAALTK  532
                +  +    +  + + +A+E    ++   V+      +D    + +I D+      +
Sbjct  551  GEVHMYAD----VLTDSMKKAIEETSRRSELQVEYNRANGIDPQPLRKRIADITDILARE  606

Query  533  RAAQAAQ---RENQRQQFPVEHVQ  553
             A  A     R+ +R+        
Sbjct  607  EADTAKILAGRDQKRKSPTPSLRS  630


>sp|Q6CN92|SPB4_KLULA ATP-dependent rRNA helicase SPB4 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / 
NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=SPB4 PE=3 SV=1
Length=596

 Score = 81.4 bits (199),  Expect = 9e-15, Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 49/123 (40%), Gaps = 8/123 (7%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            + I++  T  S      ++   + L  +    +L       S    +  + + + +  F 
Sbjct  263  KCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLF------SLHGKLQTQSRMKTLDSFT  316

Query  429  DGTLN-LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEG  486
                + +L  T VA  G+DIP  ++V++    T+    +   GR  RA++   A V    
Sbjct  317  SNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVFLNE  376

Query  487  SRE  489
             RE
Sbjct  377  GRE  379


 Score = 38.2 bits (87),  Expect = 0.28, Method: Composition-based stats.
 Identities = 20/127 (16%), Positives = 37/127 (29%), Gaps = 24/127 (19%)

Query  26   TGAGKTRAAAY------VAKRHLETVDGAKVVV----LVNRVHLVTQHGEEFRRML----  71
            TG+GKT  A        + K    +    K       +     L +Q  +     L    
Sbjct  53   TGSGKT-IAFVIPILERLIKEEANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYP  111

Query  72   ----DGRWTVTTLSGDMGPRAGFGHLARCH-DLLICTAELLQMALTSPEEEEHVELTVFS  126
                  R  +   +     R            +L+ T   +   L    ++ +V+     
Sbjct  112  DNLYPIRSQLLVGTSSASVRDDINSFTDNRPQILVGTPGRVLDFL----QKTNVKTASCG  167

Query  127  LIVVDEC  133
             +V+DE 
Sbjct  168  TVVLDEA  174


>sp|B4F2H6|RAPA_PROMH RNA polymerase-associated protein RapA OS=Proteus 
mirabilis (strain HI4320) OX=529507 GN=rapA PE=3 SV=1
Length=967

 Score = 82.2 bits (201),  Expect = 9e-15, Method: Composition-based stats.
 Identities = 84/542 (15%), Positives = 177/542 (33%), Gaps = 58/542 (11%)

Query  5    SYQWEVIMPALEGKN--IIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ  62
             +Q  +     +  N  +++    G GKT  A  +  + +      +V+++V    L  Q
Sbjct  155  PHQLYIANEVGKRHNPRVLLADEVGLGKTIEAGMIIHQQIMDGRAERVLIIVP-ESLQHQ  213

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
               E  R  + R+++   S          +      ++IC+ + ++    + +  EH+  
Sbjct  214  WLVEMLRRFNLRFSLFDDSRYSESLLDSDNPFETEQMIICSLDFVRK---NKQRFEHLVE  270

Query  123  TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG  180
              + ++VVDE HH    +            ++    A+ +P VL LTA+P      +  G
Sbjct  271  ATWDMLVVDEAHHLVWSEKAPSRE-----YQVIETLAEAIPSVLLLTATP------EQLG  319

Query  181  AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI  240
              +H  +L   LD            +  +   +P            D   +    + + I
Sbjct  320  QESHFARL-RLLDPNRFHDYNEFINE--QQKYRPVADAVTILLSEDDLNNEQQNSISEMI  376

Query  241  HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR-RYNDALLIHDTVRA  299
             +    P L          Q   +     AL  +   R     L  R   + +     R 
Sbjct  377  SEQDIEPLLKA-----SNTQGEERTKSRQALIHMLMDRHGTGRLLFRNTRSGVKGFPNRL  431

Query  300  VDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPEN-------PKLE  352
            + A+       ++  +   +I+ A++ L     +             EN       P++E
Sbjct  432  LHAIKMPLPTQYQTAIKVAEIMAAKKSLEVRAKEMLYPERIYQEFEGENATWWNFDPRVE  491

Query  353  MLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQS  412
             L   L    +++   + ++      +A  L   L++++G++                  
Sbjct  492  WLLGFL----TANRHEKVLVICAQAATALQLEQVLREREGIRAAVFH-------------  534

Query  413  THMTQRDQQEVIQKFQDGT--LNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARG  470
              M+  ++      F        +L+ + +  EG +    N +V + L  N   + Q  G
Sbjct  535  EGMSLLERDRAAAYFASEEEGAQVLLCSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIG  594

Query  471  R----ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQ  526
            R     +      +    EG+ +              E      + +   EY A +  L 
Sbjct  595  RLDRIGQNRDIDISVPYLEGTAQSVLLRWYHEGLDAFEHTCPTGRTIYDNEYDALVNYLA  654

Query  527  QA  528
            Q 
Sbjct  655  QP  656


>sp|Q12RU8|RAPA_SHEDO RNA polymerase-associated protein RapA OS=Shewanella 
denitrificans (strain OS217 / ATCC BAA-1090 / DSM 
15013) OX=318161 GN=rapA PE=3 SV=1
Length=968

 Score = 81.8 bits (200),  Expect = 9e-15, Method: Composition-based stats.
 Identities = 74/452 (16%), Positives = 151/452 (33%), Gaps = 40/452 (9%)

Query  27   GAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGP  86
            G GKT  A  +  + L T    +++V+V    L  Q   E  R  + R++V      +  
Sbjct  179  GLGKTIEAGLIMHQQLLTGRAERILVIVPD-TLRHQWLVEMLRRFNLRFSVFDEDRCVEA  237

Query  87   RAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHT--HKDTVYNV  144
             A   +      L+IC+       L   +  +      + L+VVDE HH    +D     
Sbjct  238  YADNDNPFYTEQLVICS----LELLRKKKRLDQALDADWDLLVVDEAHHLEWSEDAPSRA  293

Query  145  IMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCC  204
                  ++    ++ +P VL LTA+P   G       +  +     + D +         
Sbjct  294  -----YQVVEALSEVVPGVLLLTATPDQLGHQSHFARLRLL-----DPDRFYDYDAFLTE  343

Query  205  PQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVK  264
             Q  +   +  +  +   ++  D   + L +L+ +  D      L +       +QQ  +
Sbjct  344  EQGYQAVAEAAEALSGE-KKLNDSAINSLTELLSE-KDIAPSIRLIQANEVDPEQQQAAR  401

Query  265  LSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAE  324
                  L  L ++      L R + A +     R  +         +        ++  +
Sbjct  402  D---GLLQELLDRHGTGRVLYRNSRASVKGFPKRIFNPHPQAMPEQYVTAERVNAMMSGK  458

Query  325  RRLLALFDDRKNELAHLATHGPENP---KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAH  381
            +   A   +  +          ++    K +     L     S  S + +I     ++A 
Sbjct  459  KTPQAKALEALSPEKLYQAFESDSASWWKFDTRVDWLIAFLKSHRSKKVLIIASQAETAL  518

Query  382  SLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF--QDGTLNLLVATS  439
            SL   L+ ++G+                     M+  ++ +    F  +D     L+ + 
Sbjct  519  SLEEALRTREGILATVFH-------------EGMSIIERDKAGAYFAQEDAGAQALICSE  565

Query  440  VAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
            +  EG +    + +V + L  N   + Q  GR
Sbjct  566  IGSEGRNFQFASHLVLFDLPLNPDLLEQRIGR  597


>sp|Q54G57|ASCC3_DICDI Activating signal cointegrator 1 complex 
subunit 3 OS=Dictyostelium discoideum OX=44689 GN=ascc3 PE=3 
SV=1
Length=2195

 Score = 82.2 bits (201),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 44/177 (25%), Positives = 76/177 (43%), Gaps = 21/177 (12%)

Query  7    QWEVIMPALEG-KNIIIWLPTGAGKTRAAAYVAKRHLET---------VDGAKVVVLVNR  56
            Q  V   A +  +NI+I  PTGAGKT  A       +E+          D  K++ +   
Sbjct  487  QSRVFESAYKSNENILISAPTGAGKTNIALLTILHEIESNINPYGYLDKDNFKIIYIAPL  546

Query  57   VHLVTQHGEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE  115
              L ++  E+F   L         L+GDM          +   +++ T E     +T   
Sbjct  547  KALASEMVEKFSNSLKYLGIVSKELTGDMQLTQKE---LKETQIIVTTPEK-WDVITRKS  602

Query  116  EEEHVELTVFS-LIVVDECH--HTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS  169
             +  V LT    LI++DE H  H  +  V   I+++ L   ++  Q + +++GL+A+
Sbjct  603  SD--VALTKLVRLIIIDEIHLLHEERGPVLECIVARTLRQ-VETTQEMIRIVGLSAT  656


 Score = 68.3 bits (165),  Expect = 2e-10, Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 61/153 (40%), Gaps = 8/153 (5%)

Query  18    KNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEE--FRRMLDGRW  75
              N+++  PTG+GKT  A     +        KVV +     LV +   +   +       
Sbjct  1343  NNVLLGSPTGSGKTICAELAMFKVFRDEPHMKVVYIAPLKALVRERMNDWKVKFQEKLGK  1402

Query  76    TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH  135
              +  L+GD  P        +  D++  T E       + +   +V  T  SL+++DE H 
Sbjct  1403  KLVELTGDYTPNMI---ALQNADIVTTTPEKWDGISRNWKNRSYV--TSVSLLIIDEIHL  1457

Query  136   THK-DTVYNVIMSQYLELKLQRAQPLPQVLGLT  167
               +       ++   ++L  ++     +V+GL+
Sbjct  1458  IGELRGPILEVIVSRMKLISKQTGVNIRVVGLS  1490


>sp|A1R6F3|UVRB_PAEAT UvrABC system protein B OS=Paenarthrobacter 
aurescens (strain TC1) OX=290340 GN=uvrB PE=3 SV=1
Length=699

 Score = 81.8 bits (200),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 42/267 (16%), Positives = 89/267 (33%), Gaps = 39/267 (15%)

Query  363  SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE  422
             +  + R ++ T T++ A  L  +L              +  G       + +    + E
Sbjct  449  RTEKNERVLVTTLTKRMAEDLTDYL--------------VGHGVKVEYLHSDVDTLRRVE  494

Query  423  VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQS  477
            ++++ + G  ++LV  ++  EGLD+P  ++V          L +  S++Q  GRA  + S
Sbjct  495  LLRELRMGVFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSSTSLIQTIGRAARNVS  554

Query  478  VYAFVATEGSRELKRELINEALETLMEQAVAAVQ-----KMDQAEYQAKIRDLQQAALTK  532
                +  +       + +  A+E    +    VQ      +D    + KI D+      +
Sbjct  555  GQVHMYADR----ITDSMAHAIEETNRRRAIQVQYNTDHGIDPQPLRKKIADITDQLAKE  610

Query  533  RAAQAAQRENQRQQFPVEHVQLLCINCM------VAVGHGSDL-----RKVEGTHHVNVN  581
             A       N R     +  +             +A     DL     +  E  H     
Sbjct  611  DADTQELLNNNRLAKGGKRGKSAAKGAATVRQDGLAAAPAEDLVGLIEQLTEQMHGAAAE  670

Query  582  PNFSNYYNVSRDPVVINKVFKDWKPGG  608
              F     +  +   + +  +  +  G
Sbjct  671  LQFEVAARIRDEVKELKRELRQMQSAG  697


>sp|A5DTK7|MS116_LODEL ATP-dependent RNA helicase MSS116, mitochondrial 
OS=Lodderomyces elongisporus (strain ATCC 11503 / 
CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) OX=379508 GN=MSS116 
PE=3 SV=1
Length=692

 Score = 81.8 bits (200),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 31/175 (18%), Positives = 61/175 (35%), Gaps = 9/175 (5%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K       + +    S   + ++F  T+ +   L  ++ +      VDI    L G  ++
Sbjct  377  KFGSFFNYVNQLVKDSPDMKMMVFLPTQTAVEFLYSYMSEACHKHDVDIDIFHLHGKRSA  436

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
            S         +Q  +  F+     +L+ T VA  G+D+     VV+    +     V   
Sbjct  437  S--------QRQRALSNFKRDDSGILITTDVAARGIDVKGVTHVVQLFPSSEIADYVHKV  488

Query  470  GR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIR  523
            GR  RA +   A +            +N       EQ   + +  +  ++   +R
Sbjct  489  GRTGRAGKEGKAVLFITQPEMAYVRRLNSERGVTFEQVHESSEIDNSIDFFEGMR  543


 Score = 40.6 bits (93),  Expect = 0.047, Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 50/140 (36%), Gaps = 13/140 (9%)

Query  7    QWEVIMPALEGKNIIIW-LPTGAGKTRA--------AAYVAKRHLETVDGAKVVVLVNRV  57
            Q + I+P LE +  ++    TG GKT          A            G   V++V   
Sbjct  157  QQKSIVPLLETERGMVCRAKTGTGKTLTFLIPTLQSAVSRKIASGGRSSGVDTVIIVPTR  216

Query  58   HLVTQHGEEFRRMLDG--RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE  115
             L  Q  +E++++L G        +S  +G      +     +++I T   L+  L SP 
Sbjct  217  DLALQIYDEYQKVLRGISGSRKPHISYVIGGMKNSFNPRNPSEIVIATPGRLEADLRSPL  276

Query  116  EEEHVELTVFSLIVVDECHH  135
                   T     V DE   
Sbjct  277  FAS--AFTDIKYRVYDEADR  294


>sp|A7ESL8|DBP4_SCLS1 ATP-dependent RNA helicase dbp4 OS=Sclerotinia 
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 
GN=dbp4 PE=3 SV=1
Length=808

 Score = 81.8 bits (200),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 68/471 (14%), Positives = 136/471 (29%), Gaps = 77/471 (16%)

Query  165  GLTASPGTGGASKLDGAINHVLQLCANLDTWCI---MSPQNCCPQLQEHSQQPCKQYNLC  221
            GL AS           A+   L+    L         +     P L+   +Q   + +  
Sbjct  63   GLEASHFKTLTDVQSKAVPLALKGKDILGAAKTGSGKTLAFLVPVLENLYRQKWTELDGL  122

Query  222  HRRSQDPFGDLLKKLMDQIH--DHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRV  279
                  P  +L  ++ + +               G +  +++  +L     L  +     
Sbjct  123  GALIISPTRELAIQIFEVLRKIGRYHTFSAGLIIGGRSLQEERERLGRMNIL--VCTPGR  180

Query  280  YALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFD----DRK  335
               H+ +     + +  +  +D    + D   +  V        ++R   LF      + 
Sbjct  181  MLQHMDQTAAFDVDNLQMLVLDEADRIMDMGFQTSVDAILEHLPKQRQTMLFSATQTKKV  240

Query  336  NELAHLATHGPEN-------------------------PKLEMLEKILQRQFSSSNSPRG  370
            ++LA L+   PE                           KL  L   ++         + 
Sbjct  241  SDLARLSLKEPEYVAVHEAASSATPTTLQQHYCVVPLPEKLNTLFGFIRANLK----AKI  296

Query  371  IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG  430
            I+F  + +    +   L+  Q             G           Q  + ++  KF   
Sbjct  297  IVFMSSGKQVRFVYESLRHLQP------------GIPLLHLHGRQKQTARLDITSKFSSS  344

Query  431  TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRE  489
              + + AT V   GLD P  + V++     +  + +   GR AR  +   A +  + S E
Sbjct  345  KNSCIFATDVVARGLDFPAVDWVIQLDCPEDADTYIHRVGRTARYGKVGRAVLFLDPSEE  404

Query  490  LKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPV  549
                   E +   +E     +QK                 +  R  +    +NQ Q    
Sbjct  405  -------EGMLKRLEHKKVPIQK-----------------INIRPNKTQDIKNQLQNMCF  440

Query  550  EHVQLLCINCMVAVGHGSDLRKVEGTHHVNVNPNFSNYYNVSRDPVVINKV  600
            +  +L  +     V +   +   +     N+N      Y  S       K+
Sbjct  441  QDPELKYLGQKAFVSYAKSVFLQKDKEIFNINDIDLEGYASSIGLPGAPKI  491


 Score = 55.6 bits (132),  Expect = 1e-06, Method: Composition-based stats.
 Identities = 28/136 (21%), Positives = 56/136 (41%), Gaps = 12/136 (9%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAY--VAKRHLETV----DGAKVVVLVNRVHLV  60
            Q + +  AL+GK+I+    TG+GKT  A    V +          DG   +++     L 
Sbjct  76   QSKAVPLALKGKDILGAAKTGSGKTL-AFLVPVLENLYRQKWTELDGLGALIISPTRELA  134

Query  61   TQHGEEFRRMLDGR-WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
             Q  E  R++     ++   + G    +     L R + +L+CT   +   +   ++   
Sbjct  135  IQIFEVLRKIGRYHTFSAGLIIGGRSLQEERERLGRMN-ILVCTPGRMLQHM---DQTAA  190

Query  120  VELTVFSLIVVDECHH  135
             ++    ++V+DE   
Sbjct  191  FDVDNLQMLVLDEADR  206


>sp|Q80Y44|DDX10_MOUSE Probable ATP-dependent RNA helicase DDX10 
OS=Mus musculus OX=10090 GN=Ddx10 PE=1 SV=2
Length=875

 Score = 81.8 bits (200),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 72/197 (37%), Gaps = 24/197 (12%)

Query  338  LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD  397
            L         + K+ +L   L+         + I+F  + +    L     + +      
Sbjct  288  LEQNYIICELHQKISVLFSFLRSHLKK----KSIVFFSSCKEVQYLYRVFCRLRP-----  338

Query  398  IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG  457
                   G    +      Q  + EV  +F      +L AT +A  GLD P  N V+++ 
Sbjct  339  -------GISILALHGRQQQMRRMEVYNEFVRKRAAVLFATDIAARGLDFPAVNWVLQFD  391

Query  458  LLTNEISMVQARGRA---RADQSVYAFVATEGSRELKRELINEALE----TLMEQAVAAV  510
               +  + +   GR    + D      +     + + ++L+ + +      +  + +  V
Sbjct  392  CPEDANTYIHRAGRTARYKEDGEALLILLPSEEQGMVQQLLQKKVPVKEIKINPEKLIDV  451

Query  511  QKMDQAEYQAKIRDLQQ  527
            QK  ++ + A+ +DL++
Sbjct  452  QKKLES-FLAQDQDLKE  467


 Score = 57.9 bits (138),  Expect = 2e-07, Method: Composition-based stats.
 Identities = 60/394 (15%), Positives = 119/394 (30%), Gaps = 27/394 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTR---AAAYVAKRHLETV--DGAKVVVLVNRVHLVT  61
            Q + I  AL+GK+++    TG+GKT         A   L+    DG  V+++     L  
Sbjct  96   QKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAY  155

Query  62   QHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVE  121
            Q  E  R++         L                 ++L+CT   L   +          
Sbjct  156  QTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETIC---FH  212

Query  122  LTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGA  181
             T   ++V+DE      D  +   M+  +E   ++ Q L  +   T +      ++L   
Sbjct  213  ATNLQMLVLDEADR-ILDMGFADTMNAIIENLPKKRQTL--LFSATQTKSVKDLARLSLK  269

Query  182  INHVLQLCANLDTWCIMSPQNCCP--QLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQ  239
                + +          + +      +L +             ++    F    K++   
Sbjct  270  DPEYVWVHEKAKYSTPATLEQNYIICELHQKISVLFSFLRSHLKKKSIVFFSSCKEVQYL  329

Query  240  IHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRA  299
                  +            +QQ+ ++         +   ++A  +          + V  
Sbjct  330  YRVFCRLRPGISILALHGRQQQMRRMEVYNEFVRKRAAVLFATDIAARGLDFPAVNWVLQ  389

Query  300  VDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHL------ATHGPENP-KLE  352
             D       + HR   T       E  L+ L  + +  +  L            NP KL 
Sbjct  390  FDCPEDANTYIHRAGRTARYKEDGEALLILLPSEEQGMVQQLLQKKVPVKEIKINPEKLI  449

Query  353  MLEKILQRQFSSSNS-----PRGIIFTRTRQSAH  381
             ++K L+   +          R   F    +S +
Sbjct  450  DVQKKLESFLAQDQDLKERAQRC--FVSYIRSVY  481


>sp|C0MBD7|UVRB_STRE4 UvrABC system protein B OS=Streptococcus 
equi subsp. equi (strain 4047) OX=553482 GN=uvrB PE=3 SV=1
Length=663

 Score = 81.4 bits (199),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 76/205 (37%), Gaps = 21/205 (10%)

Query  349  PKLEMLEKILQRQ-FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG  407
            P +  ++ +L           R  I T T++ A  L  +L++              +G  
Sbjct  431  PSMGQMDDLLGEINLRVERGERTFITTLTKKMAEDLTDYLKE--------------MGVK  476

Query  408  NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNE  462
                 + +   ++ E+I+  + G  ++L+  ++  EG+D+P  ++V          L NE
Sbjct  477  VKYMHSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNE  536

Query  463  ISMVQARGRARADQSVYAFVATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAK  521
              ++Q  GRA  +   +  +  +  +  ++R +   A    ++ A      +     +  
Sbjct  537  RGLIQTIGRAARNADGHVIMYADRMTDSMQRAIDETARRRAIQMAYNEEHGIIPQTIKKD  596

Query  522  IRDLQQAALTKRAAQAAQRENQRQQ  546
            IRDL   +    A       N    
Sbjct  597  IRDLISISRAVEAKATEAETNYESM  621


>sp|Q6BH93|HAS1_DEBHA ATP-dependent RNA helicase HAS1 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / 
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=HAS1 PE=3 SV=1
Length=568

 Score = 81.4 bits (199),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 46/287 (16%), Positives = 93/287 (32%), Gaps = 17/287 (6%)

Query  253  FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHR  312
             G     Q+  KL +   L      R+   HL+     +  +     +D    + +    
Sbjct  211  IGGANRRQEAEKLMKGVNLLIATPGRLLD-HLQNTQGFVFKNVKALVIDEADRILEIGFE  269

Query  313  EHVTKT-QILCAERRLLALFDD----RKNELAHLA-THGPEN------PKLEMLEKILQR  360
            E + +  +IL  E R   LF      +  +LA ++   GP         +   +  + Q 
Sbjct  270  EEMKQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLYINVASESEASTVAGLEQG  329

Query  361  QFSSSNSPR-GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRD  419
                 +  R  ++F+  +++    ++                  I            Q+ 
Sbjct  330  YVVCESDKRFLLLFSFLKRNVKKKIIVFLSSCNCVKYFGELLNYIDLPVLDLHGKQKQQK  389

Query  420  QQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR--ADQ  476
            +     +F + T  +L+ T VA  GLDIP  + ++++    +    +   GR AR  A +
Sbjct  390  RTNTFFEFCNATQGILICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTAGK  449

Query  477  SVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIR  523
                   T       R L    +     +         Q++    I+
Sbjct  450  GKSLMFLTPSELGFLRYLKAANVPLNEYEFPTNKIANVQSQLTKLIK  496


 Score = 52.9 bits (125),  Expect = 8e-06, Method: Composition-based stats.
 Identities = 32/135 (24%), Positives = 48/135 (36%), Gaps = 9/135 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT---RAAAYVAKRHLETVD--GAKVVVLVNRVHLVT  61
            Q + I P L G++++    TG+GKT      A      L      G  VVV+     L  
Sbjct  131  QAKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEMLYSLRFKPRNGTGVVVVSPTRELAL  190

Query  62   QHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
            Q     R ++         + G    R     L +  +LLI T   L   L +   +  V
Sbjct  191  QIFGVARELMAHHSQTFGIVIGGANRRQEAEKLMKGVNLLIATPGRLLDHLQNT--QGFV  248

Query  121  ELTVFSLIVVDECHH  135
                   +V+DE   
Sbjct  249  -FKNVKALVIDEADR  262


>sp|A8AJ07|UVRB_CITK8 UvrABC system protein B OS=Citrobacter koseri 
(strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) OX=290338 
GN=uvrB PE=3 SV=1
Length=673

 Score = 81.4 bits (199),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 26/125 (21%), Positives = 55/125 (44%), Gaps = 19/125 (15%)

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
            + R ++ T T++ A  L  +L++               G       + +   ++ E+I+ 
Sbjct  446  NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  + +  A 
Sbjct  492  LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI  551

Query  482  VATEG  486
            +  + 
Sbjct  552  LYGDK  556


>sp|Q6CKZ4|DBP6_KLULA ATP-dependent RNA helicase DBP6 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 
1267 / NRRL Y-1140 / WM37) OX=284590 GN=DBP6 PE=3 SV=1
Length=630

 Score = 81.4 bits (199),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 56/361 (16%), Positives = 131/361 (36%), Gaps = 32/361 (9%)

Query  181  AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI  240
             +N V  +        I    +C  +L + +       N+   + ++   +   K +   
Sbjct  257  TVNKVRAIILVPTKILIHQVYDCLSKLSQGTS-----LNVSMSKLENSLKEEHNKFLYNS  311

Query  241  HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV  300
             D L +            + +   L     L   +  R+     + +N  L  H T    
Sbjct  312  PDILIITPGRLV---DHLQMESFDLKTLKFLVLDEADRLLNQSFQNWNQVLFHHLTNDKQ  368

Query  301  DA-------------LAALQDFYHREHVTKTQILCAERRLLALFDDRKNELA-HLATHGP  346
            D              L    +  +  ++   +I   +   L     +  EL  ++ T   
Sbjct  369  DKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTDSVKLYSIPKKLQELNVNIPTAKS  428

Query  347  ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA  406
                L +L  I   + S+S + + ++F ++ +++  L   L    G   ++    + +  
Sbjct  429  LFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRLESLLHAMLGSGIIEDEYNMFL--  486

Query  407  GNSSQSTHMTQRDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
              SS  +++++   +++IQ+F   +   ++L++T +   G+DI     V+ Y L  +   
Sbjct  487  --SSIHSNISKGSSRKLIQEFASSEQKKSVLISTDIMARGIDINEITHVINYDLPISSQQ  544

Query  465  MVQARGR-ARADQSVYAF--VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK  521
             V   GR ARA+    A   +  +G ++   + I+  L   ++    +   +D+ +    
Sbjct  545  YVHRCGRTARANTEGIAINLLVGKGEQKFWSQHIDTDLSRDIDGYQPSAY-LDEEKLSEL  603

Query  522  I  522
             
Sbjct  604  F  604


 Score = 53.6 bits (127),  Expect = 5e-06, Method: Composition-based stats.
 Identities = 30/146 (21%), Positives = 53/146 (36%), Gaps = 8/146 (5%)

Query  20   IIIWLPTGAGKTRAAAYVAKRHLE--TVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV  77
            I++   TG+GKT A +    + L   TV+  + ++LV    L+ Q  +   ++  G    
Sbjct  231  ILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSLN  290

Query  78   TTLS--GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH  135
             ++S   +         L    D+LI T   L   L         +L     +V+DE   
Sbjct  291  VSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMES----FDLKTLKFLVLDEADR  346

Query  136  THKDTVYNVIMSQYLELKLQRAQPLP  161
                +  N     +  L   +    P
Sbjct  347  LLNQSFQNWNQVLFHHLTNDKQDKRP  372


>sp|P57991|UVRB_MYCLE UvrABC system protein B OS=Mycobacterium 
leprae (strain TN) OX=272631 GN=uvrB PE=3 SV=1
Length=698

 Score = 81.4 bits (199),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 33/176 (19%), Positives = 70/176 (40%), Gaps = 20/176 (11%)

Query  363  SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE  422
             ++   R ++ T T++ A  L  +L +              +G       + +    + E
Sbjct  443  RANADQRVLVTTLTKKMAEDLTDYLLE--------------MGIRVRYLHSEVDTLRRVE  488

Query  423  VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQS  477
            ++++ + G  ++LV  ++  EGLD+P  ++V          L +  S++Q  GRA  + S
Sbjct  489  LLRQLRLGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSARSLIQTIGRAARNVS  548

Query  478  VYAFVATEGSRELKRELINEALETLMEQ-AVAAVQKMDQAEYQAKIRDLQQAALTK  532
                +  +   +   E I+E      +Q A      +D    + KI D+      +
Sbjct  549  GEVHMYADTITDSMTEAIDETERRRAKQIAYNNANGIDPQPLRKKIADILDQVYRE  604


 Score = 34.4 bits (77),  Expect = 4.5, Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 27/65 (42%), Gaps = 6/65 (9%)

Query  9   EVIMPALEGKNIIIWLP-TGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEF  67
           E+    L G+  ++ L  TG GK+   A++ +R          +V+     L  Q   E 
Sbjct  25  ELQRRILAGERDVVLLGATGTGKSATTAWLIERLQRPT-----LVMAPNKTLAAQLANEL  79

Query  68  RRMLD  72
           R ML 
Sbjct  80  RGMLP  84


>sp|A4XKY5|UVRB_CALS8 UvrABC system protein B OS=Caldicellulosiruptor 
saccharolyticus (strain ATCC 43494 / DSM 8903 / Tp8T 
6331) OX=351627 GN=uvrB PE=3 SV=1
Length=661

 Score = 81.4 bits (199),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 44/294 (15%), Positives = 98/294 (33%), Gaps = 59/294 (20%)

Query  305  ALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSS  364
             L              L    R++         +       P   +++ L   +++    
Sbjct  384  KLNQVIFVSATPGPYELKKSSRVVEQIIRPTGLVDPEIEVHPVKGQIDHLIGEIRK--RV  441

Query  365  SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI  424
              + R +I T T++ A SL  +L+               +G       + +   ++ ++I
Sbjct  442  EKNQRVLITTLTKKMAESLTEYLKD--------------VGIRVRYMHSDIDTIERMQII  487

Query  425  QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVY  479
            +  + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  +    
Sbjct  488  RDLRLGKFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRAARNVDGK  547

Query  480  AFVATEGSRELKRELINEA-------LETLMEQAVAA-----------------------  509
              +  +   +  ++ I+E        +E   +  +                         
Sbjct  548  VIMYADRITKAMQKAIDETNRRRKIQIEYNQKHGIVPQTVRKGIRQIIEATISVAEEEEK  607

Query  510  --------VQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQLL  555
                    VQ M + E +  I++L+Q           ++  + +    E  +LL
Sbjct  608  YESIEKDIVQNMSKQEIEEYIKELEQQMKRFAIELEFEKAAKIRDKIFELKKLL  661


 Score = 35.9 bits (81),  Expect = 1.4, Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 7/64 (11%)

Query  9   EVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFR  68
           E I+   + + ++    TG+GKT   A V +           +VL +   L  Q   EFR
Sbjct  25  EGILKGEKFQTLLGV--TGSGKTFTMAKVIENVQRPT-----LVLAHNKTLAAQLCSEFR  77

Query  69  RMLD  72
               
Sbjct  78  EFFP  81


>sp|Q0DBS1|RH51_ORYSJ Putative DEAD-box ATP-dependent RNA helicase 
51 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0535100 
PE=3 SV=2
Length=590

 Score = 81.0 bits (198),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 25/126 (20%), Positives = 42/126 (33%), Gaps = 18/126 (14%)

Query  365  SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI  424
            S   + ++F  +  S           Q L  + I    + G         + Q  +    
Sbjct  339  SEKTKVMVFFSSCNSVK------FHAQLLNFIQIECYDIHGQ--------LKQHQRTSTF  384

Query  425  QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARAD----QSVYA  480
             KF      +L+ T+VA  GLDIP  + +V+Y         +   GR         S   
Sbjct  385  FKFHKAEHGILLCTNVAARGLDIPDVDYIVQYDPPDETKDYIHRVGRTARGDNGKGSAIL  444

Query  481  FVATEG  486
            F+  + 
Sbjct  445  FLLPKE  450


 Score = 59.8 bits (143),  Expect = 5e-08, Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 60/162 (37%), Gaps = 17/162 (10%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA----AA-YVAKRHLETVDGAKVVVLVNRVHLVT  61
            Q   I P + G +++    TG+GKT A    A   + +      +G  V+VL     L  
Sbjct  113  QARSIPPLMLGSDVMASAKTGSGKTLAFLIPAIELLCRLRFSPRNGTGVIVLCPTRELAI  172

Query  62   QHGEEFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
            Q     + ++           G +  R     LA+  ++L+ T   L   +   +  ++ 
Sbjct  173  QTHNVAKELMRYHSQTLGYVIGGIDLRGEAEQLAKGINVLVATPGRLLDHMQKTKSFKYE  232

Query  121  ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQ  162
             L     +++DE           ++   + E   Q  + LP+
Sbjct  233  CLK---CLIIDEADR--------ILEQNFEEQMKQIFKLLPR  263


>sp|P10125|UVRB_MICLC UvrABC system protein B OS=Micrococcus luteus 
(strain ATCC 4698 / DSM 20030 / JCM 1464 / CCM 169 / CCUG 
5858 / IAM 1056 / NBRC 3333 / NCIMB 9278 / NCTC 2665 / VKM 
Ac-2230) OX=465515 GN=uvrB PE=3 SV=3
Length=709

 Score = 81.4 bits (199),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 32/178 (18%), Positives = 71/178 (40%), Gaps = 20/178 (11%)

Query  363  SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE  422
             ++   R ++ T T++ A  L  +L +               G       + +    + E
Sbjct  449  RTAKDERVLVTTLTKRMAEDLTDYLLEA--------------GVKVEYLHSDVDTLRRVE  494

Query  423  VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQS  477
            ++++ + GT ++LV  ++  EGLD+P  ++V          L +  S++Q  GRA  + S
Sbjct  495  LLRELRKGTFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAARNVS  554

Query  478  VYAFV-ATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRA  534
                + A   +  ++R +        ++ A      +D    + +I D+      + A
Sbjct  555  GEVHMYAGNVTDSMRRAIEETERRRAVQIAYNEEHGIDPQPLRKRIADITDQLAREDA  612


>sp|Q12TR7|UVRB_METBU UvrABC system protein B OS=Methanococcoides 
burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) 
OX=259564 GN=uvrB PE=3 SV=1
Length=660

 Score = 81.4 bits (199),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 64/183 (35%), Gaps = 22/183 (12%)

Query  364  SSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEV  423
            +    R ++ T T++ A  L  +L +              +G       + +   ++ E+
Sbjct  443  TEKGYRTLVTTLTKRMAEDLTEYLLE--------------MGIRVRYMHSDIDTLERAEI  488

Query  424  IQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSV  478
            I+  + G  ++LV  ++  EGLDIP    V          L +E S++Q  GRA  +   
Sbjct  489  IRDLRKGVFDVLVGINLLREGLDIPEVAFVAILDADKEGFLRSERSLIQTMGRASRNADG  548

Query  479  YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA  538
            Y  +    + ++   +     ET   + +              I    Q  L +      
Sbjct  549  YVIL---YAGKVTGSIEAALRETNRRRQIQLAYNEKHGIVPQTIHKALQRELVETEYGEV  605

Query  539  QRE  541
              E
Sbjct  606  VSE  608


 Score = 34.4 bits (77),  Expect = 4.1, Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 7/64 (11%)

Query  9   EVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFR  68
           E +   L+ + ++    TG+GKT   A V +           +V+ +   L  Q   EFR
Sbjct  25  EGLNKGLKHQVLLGV--TGSGKTFTVANVIQNV-----QKPTLVIAHNKTLAAQLFSEFR  77

Query  69  RMLD  72
               
Sbjct  78  EFFP  81


>sp|B4U3P4|UVRB_STREM UvrABC system protein B OS=Streptococcus 
equi subsp. zooepidemicus (strain MGCS10565) OX=552526 GN=uvrB 
PE=3 SV=1
Length=663

 Score = 81.4 bits (199),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 76/205 (37%), Gaps = 21/205 (10%)

Query  349  PKLEMLEKILQRQ-FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG  407
            P +  ++ +L           R  I T T++ A  L  +L++              +G  
Sbjct  431  PSMGQMDDLLGEINLRVERGERTFITTLTKKMAEDLTDYLKE--------------MGVK  476

Query  408  NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNE  462
                 + +   ++ E+I+  + G  ++L+  ++  EG+D+P  ++V          L NE
Sbjct  477  VKYMHSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNE  536

Query  463  ISMVQARGRARADQSVYAFVATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAK  521
              ++Q  GRA  +   +  +  +  +  ++R +   A    ++ A      +     +  
Sbjct  537  RGLIQTIGRAARNADGHVIMYADRMTDSMQRAIDETARRRAIQMAYNEEHGIIPQTIKKD  596

Query  522  IRDLQQAALTKRAAQAAQRENQRQQ  546
            IRDL   +    A       N    
Sbjct  597  IRDLISISRAVEAKATEAETNYESM  621


>sp|Q480C7|UVRB_COLP3 UvrABC system protein B OS=Colwellia psychrerythraea 
(strain 34H / ATCC BAA-681) OX=167879 GN=uvrB PE=3 
SV=1
Length=673

 Score = 81.4 bits (199),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 36/204 (18%), Positives = 75/204 (37%), Gaps = 21/204 (10%)

Query  307  QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSN  366
            Q  Y     +K ++      +          L       P   +++ L   + ++     
Sbjct  387  QTIYVSATPSKFELEKCGSDIAEQVVRPTGLLDPEIEVRPVETQVDDLLSEINKRLPLDE  446

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
              R +  T T++ A  L  +L                 G       + +   ++ E+I+ 
Sbjct  447  --RVLATTLTKRMAEDLTDYLYD--------------HGIKARYLHSDVDTVERVEIIRD  490

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
            F+ G  ++LV  ++  EGLD+P  ++V          L ++ S++Q  GRA  + +  A 
Sbjct  491  FRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRAARNLNGRAI  550

Query  482  VATEGSRELKRELINEALETLMEQ  505
            +  +      R  I+E     ++Q
Sbjct  551  LYGDRITGSMRRAIDETERRRVKQ  574


>sp|A4W6G3|RAPA_ENT38 RNA polymerase-associated protein RapA OS=Enterobacter 
sp. (strain 638) OX=399742 GN=rapA PE=3 SV=1
Length=968

 Score = 81.8 bits (200),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 77/476 (16%), Positives = 153/476 (32%), Gaps = 44/476 (9%)

Query  5    SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ  62
             +Q  +           +++    G GKT  A  +  + L +    +V+++V    L  Q
Sbjct  156  PHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIVVP-ETLQHQ  214

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
               E  R  + R+++         +    +      L+IC+   L     S +  EH+  
Sbjct  215  WLVEMLRRFNLRFSLFDDERYAEAQHDADNPFETEQLVICS---LDFVRRSKQRLEHLCD  271

Query  123  TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG  180
              + L+VVDE HH    ++               Q A+ +P +L LTA+P      +  G
Sbjct  272  AEWDLLVVDEAHHLVWSENAPSRE-----YMAIEQLAERVPGILLLTATP------EQLG  320

Query  181  AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI  240
              +H  +L   L         +   + ++ + +P           +    D L  L D I
Sbjct  321  LESHFARL--RLLDPNRFHDFDVFVE-EQQNYRPVADAVAMLLAGKHLSNDELNTLSDLI  377

Query  241  HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV  300
             +    P L      +       +   +  +      RV   + R         +     
Sbjct  378  GEQDIEPLLHTANSDRDGADAARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIK  437

Query  301  DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG---PENPKLEMLEKI  357
              L        +          AE R   +    +         G     +P++E L   
Sbjct  438  LPLPTQYQTAIKVSGIMGARKSAEERARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGY  497

Query  358  LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ  417
            L        S + ++      +A  L   L++++G++                    M+ 
Sbjct  498  LTAH----RSQKVLVICAKAATALQLEQVLREREGIRAAVFH-------------EGMSI  540

Query  418  RDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
             ++      F  +D    +L+ + +  EG +    + +V + L  N   + Q  GR
Sbjct  541  IERDRAAAWFGEEDSGAQVLLCSEIGSEGRNFQFASKLVMFDLPFNPDLLEQRIGR  596


>sp|P0DMI1|HELS_ARCFU ATP-dependent DNA helicase Hel308 OS=Archaeoglobus 
fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 
/ NBRC 100126 / VC-16) OX=224325 GN=hel308 PE=1 SV=1
Length=691

 Score = 81.4 bits (199),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 69/165 (42%), Gaps = 15/165 (9%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEE  66
            Q E +     GKN+++ +PT AGKT  A     R  E + G K + +V    L  +  E 
Sbjct  30   QAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVR--EAIKGGKSLYVVPLRALAGEKYES  87

Query  67   FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS  126
            F++       +   +GD   R          D+++ T+E     + +        +   S
Sbjct  88   FKKWEKIGLRIGISTGDYESR---DEHLGDCDIIVTTSEKADSLIRNRASW----IKAVS  140

Query  127  LIVVDECHH--THKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS  169
             +VVDE H   + K      I+      K++R     +V+GL+A+
Sbjct  141  CLVVDEIHLLDSEKRGATLEILV----TKMRRMNKALRVIGLSAT  181


 Score = 45.2 bits (105),  Expect = 0.002, Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 60/169 (36%), Gaps = 32/169 (19%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQ-------QQQGLQTVDI----  398
            K E L +        + +   ++F  TR+ A    + L        + +GL+   +    
Sbjct  230  KFEELVEE-----CVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENE  284

Query  399  -----RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV  453
                 +    +  G +     +    ++ V   F+ G + ++VAT     G+++P   V+
Sbjct  285  GEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVI  344

Query  454  V----RYGLLTNEIS---MVQARGRARAD----QSVYAFVATEGSRELK  491
            V    R+   +  I      Q  GRA       +     +  +  RE+ 
Sbjct  345  VRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIA  393


>sp|A4W1F7|UVRB_STRS2 UvrABC system protein B OS=Streptococcus 
suis (strain 98HAH33) OX=391296 GN=uvrB PE=3 SV=1
Length=661

 Score = 81.4 bits (199),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 30/167 (18%), Positives = 68/167 (41%), Gaps = 20/167 (12%)

Query  365  SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI  424
                R  I T T++ A  L  +L++              +G       + +   ++ E+I
Sbjct  448  EKGERTFITTLTKKMAEDLTDYLKE--------------MGVKVKYMHSDIKTLERTEII  493

Query  425  QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVY  479
            +  + G  ++L+  ++  EG+D+P  ++V          L NE  ++Q  GRA  +   +
Sbjct  494  RDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSEGH  553

Query  480  AFVATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDL  525
              +  +  +  +++ +   A    ++ A      +     + +IRDL
Sbjct  554  VIMYADKVTESMRKAMEETARRRQIQMAYNEEHGIIPQTIKKEIRDL  600


>sp|A7Z985|UVRB_BACVZ UvrABC system protein B OS=Bacillus velezensis 
(strain DSM 23117 / BGSC 10A6 / LMG 26770 / FZB42) OX=326423 
GN=uvrB PE=3 SV=1
Length=661

 Score = 81.4 bits (199),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 73/187 (39%), Gaps = 20/187 (11%)

Query  365  SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI  424
              + R ++ T T++ +  L  +L++              IG   +   + +   ++ E+I
Sbjct  443  ERNERVLVTTLTKKMSEDLTDYLKE--------------IGIKVNYLHSEIKTLERIEII  488

Query  425  QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVY  479
            +  + G  ++L+  ++  EGLDIP  ++V          L +E S++Q  GRA  +    
Sbjct  489  RDLRLGKHDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAEGR  548

Query  480  AFVATEGSRELKRELINE-ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA  538
              +  +         INE       ++    +  +       +IRD+ +A       +  
Sbjct  549  VIMYADKITNSMEIAINETKRRREQQERFNEIHGITPQTINKEIRDVIRATQAAEDKEEY  608

Query  539  QRENQRQ  545
            + +   +
Sbjct  609  KTKAAPK  615


>sp|C0MDC6|UVRB_STRS7 UvrABC system protein B OS=Streptococcus 
equi subsp. zooepidemicus (strain H70) OX=553483 GN=uvrB PE=3 
SV=1
Length=663

 Score = 81.4 bits (199),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 76/205 (37%), Gaps = 21/205 (10%)

Query  349  PKLEMLEKILQRQ-FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG  407
            P +  ++ +L           R  I T T++ A  L  +L++              +G  
Sbjct  431  PSMGQMDDLLGEINLRIERGERTFITTLTKKMAEDLTDYLKE--------------MGVK  476

Query  408  NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNE  462
                 + +   ++ E+I+  + G  ++L+  ++  EG+D+P  ++V          L NE
Sbjct  477  VKYMHSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNE  536

Query  463  ISMVQARGRARADQSVYAFVATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAK  521
              ++Q  GRA  +   +  +  +  +  ++R +   A    ++ A      +     +  
Sbjct  537  RGLIQTIGRAARNADGHVIMYADRMTDSMQRAIDETARRRAIQMAYNEEHGIIPQTIKKD  596

Query  522  IRDLQQAALTKRAAQAAQRENQRQQ  546
            IRDL   +    A       N    
Sbjct  597  IRDLISISRAVEAKATEAETNYESM  621


>sp|A7ZW09|RAPA_ECOHS RNA polymerase-associated protein RapA OS=Escherichia 
coli O9:H4 (strain HS) OX=331112 GN=rapA PE=3 
SV=1
Length=968

 Score = 81.4 bits (199),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 80/476 (17%), Positives = 152/476 (32%), Gaps = 44/476 (9%)

Query  5    SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ  62
             +Q  +           +++    G GKT  A  +  + L +    +V+++V    L  Q
Sbjct  156  PHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVP-ETLQHQ  214

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
               E  R  + R+ +         +    +      L+IC+   L  A  S +  EH+  
Sbjct  215  WLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICS---LDFARRSKQRLEHLCE  271

Query  123  TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG  180
              + L+VVDE HH    +D           +   Q A+ +P VL LTA+P      +  G
Sbjct  272  AEWDLLVVDEAHHLVWSEDAPSRE-----YQAIEQLAEHVPGVLLLTATP------EQLG  320

Query  181  AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI  240
              +H  +L   LD            +  + + +P                D L  L + I
Sbjct  321  MESHFARL-RLLDPNRFHDFAQFVEE--QKNYRPVADAVAMLLAGNKLSNDELNMLGEMI  377

Query  241  HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV  300
             +    P L          Q   +   +  +      RV   + R         +     
Sbjct  378  GEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIK  437

Query  301  DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG---PENPKLEMLEKI  357
              L        +          AE R   +    +        +      +P++E L   
Sbjct  438  LPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGY  497

Query  358  LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ  417
            L        S + ++      +A  L   L++++G++                    M+ 
Sbjct  498  LTSH----RSQKVLVICAKAATALQLEQVLREREGIRAAVFH-------------EGMSI  540

Query  418  RDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
             ++      F  +D    +L+ + +  EG +    + +V + L  N   + Q  GR
Sbjct  541  IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR  596


>sp|Q0E2Q3|IF4A2_ORYSJ Putative eukaryotic initiation factor 4A-2 
OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0221300 
PE=3 SV=2
Length=416

 Score = 80.2 bits (196),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 35/167 (21%), Positives = 66/167 (40%), Gaps = 20/167 (12%)

Query  347  ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA  406
            E+ KL+ L  +    F +    R IIF  TR  A SL   ++ +              G 
Sbjct  269  EDCKLDKLCGL----FDTMEITRSIIFVNTRHHAKSLTEKIRGK--------------GY  310

Query  407  GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV  466
              S+    + QR + + +Q+FQ G+  +L+ T +   G+D+      + Y L T  +  +
Sbjct  311  TVSAIHGGIHQRARDKAVQEFQSGSSRILITTDL--RGIDVLRAPAAIFYDLPTQPVCYL  368

Query  467  QARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM  513
            +     +  +   A      + E     I +   T +E+  + V  +
Sbjct  369  RHVQSGQHGRKGVAISFITSTDERVFSTIQKFCNTQIEELPSNVADL  415


>sp|Q6CTN7|MAK5_KLULA ATP-dependent RNA helicase MAK5 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 
1267 / NRRL Y-1140 / WM37) OX=284590 GN=MAK5 PE=3 SV=1
Length=796

 Score = 81.4 bits (199),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 46/125 (37%), Gaps = 23/125 (18%)

Query  370  GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD  429
             ++F     S   L  +L   +                +    + M Q+++   ++KF++
Sbjct  513  TLVFCNAIDSVKKLNAFLNNLK--------------ISSFQIHSSMAQKNRLRNLEKFKE  558

Query  430  --------GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYA  480
                    G   +L+A+ VA  GLDI     V+ Y L  +    +   GR AR D    +
Sbjct  559  QSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVS  618

Query  481  FVATE  485
             +   
Sbjct  619  VMICS  623


 Score = 55.2 bits (131),  Expect = 2e-06, Method: Composition-based stats.
 Identities = 24/143 (17%), Positives = 51/143 (36%), Gaps = 11/143 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAA-AYVAKRHLETVDGAKVV--VLVNRVHLVTQ-  62
            Q + I  AL+G NI+    TG+GKT A    + ++ ++     + +  +      L  Q 
Sbjct  246  QLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIKDTSNDRSIGLIFTPTRELAHQV  305

Query  63   ----HGEEFRRMLDGRWTVTTLSGDMGPRAGFG--HLARCHDLLICTAELLQMALTSPEE  116
                     +     ++T+ +L+G +  +             +++ T       L     
Sbjct  306  TDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSGRIIVATPGRFLE-LLERNP  364

Query  117  EEHVELTVFSLIVVDECHHTHKD  139
            +          +V+DE     +D
Sbjct  365  DLIPRFAKIDTLVLDEADRLLQD  387


 Score = 36.7 bits (83),  Expect = 0.93, Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 43/90 (48%), Gaps = 10/90 (11%)

Query  351  LEMLEKILQRQFSSSNSPRGI--IFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN  408
            L     I+++    +++ R I  IFT TR+ AH +   LQ+         +  +L     
Sbjct  271  LAYGIPIIEQLIKDTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTIL-----  325

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVAT  438
             S +  ++ + Q+ +++   DG+  ++VAT
Sbjct  326  -SLTGGLSIQKQERILKY--DGSGRIIVAT  352


>sp|Q5BBY1|HAS1_EMENI ATP-dependent RNA helicase has1 OS=Emericella 
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 
194 / M139) OX=227321 GN=has1 PE=3 SV=1
Length=609

 Score = 81.0 bits (198),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 34/204 (17%), Positives = 69/204 (34%), Gaps = 31/204 (15%)

Query  294  HDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEM  353
             D +R +  +   +D   R+ +  +     +   LA    R   L     H  E+  +E 
Sbjct  293  EDEMRQIIKILPNED---RQTMLFSATQTTKVEDLARISLRPGPLYINVDHRKEHSTVEG  349

Query  354  LEK------------ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQ  401
            LE+            +L      +   + I+F  +              + L  +D+   
Sbjct  350  LEQGYVICEADKRFLLLFSFLKRNLKKKIIVFFSSCNCVK------YHAELLNYIDLPVL  403

Query  402  LLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN  461
             L G           Q+ +     +F +    +L+ T VA  GLDIP  + ++++    +
Sbjct  404  DLHG--------KQKQQKRTNTFFEFCNAKQGVLICTDVAARGLDIPAVDWIIQFDPPDD  455

Query  462  EISMVQARGRA--RADQSVYAFVA  483
                +   GR    A+    + + 
Sbjct  456  TRDYIHRVGRTARGANGRGRSLMF  479


 Score = 54.8 bits (130),  Expect = 2e-06, Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 47/135 (35%), Gaps = 9/135 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT---RAAAYVAKRHLETVD--GAKVVVLVNRVHLVT  61
            Q   I P L G++++    TG+GKT      A      L      G  V+V+     L  
Sbjct  155  QQRTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEMLSALRFKPRNGTGVIVVSPTRELAL  214

Query  62   QHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
            Q     R +L         + G    RA    L +  +LLI T   L   L +       
Sbjct  215  QIFGVARELLTAHSQTYGIVIGGANRRAEAEKLTKGVNLLIATPGRLLDHLQNTPGFVFK  274

Query  121  ELTVFSLIVVDECHH  135
             L     +V+DE   
Sbjct  275  NLKT---LVIDEADR  286


>sp|C3LR47|RAPA_VIBCM RNA polymerase-associated protein RapA OS=Vibrio 
cholerae serotype O1 (strain M66-2) OX=579112 GN=rapA 
PE=3 SV=1
Length=969

 Score = 81.4 bits (199),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 94/555 (17%), Positives = 185/555 (33%), Gaps = 70/555 (13%)

Query  5    SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ  62
             +Q  +           +++    G GKT  A  +  + + T    +++++V    L  Q
Sbjct  156  PHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQVLTGRAERILIVVP-ETLQHQ  214

Query  63   H----GEEFR---RMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE  115
                    F     + D    V   S    P     ++    D L  + +  + AL +  
Sbjct  215  WLVEMMRRFNLHFSIFDEERCVEAFSEADNPFETQQYVLCSLDFLRKSRQRFEQALEAEW  274

Query  116  EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGA  175
                       L+VVDE HH  +        S+  ++    A+  P VL LTA+P     
Sbjct  275  ----------DLLVVDEAHH-LEWHP--EKPSREYQVIEALAEQTPGVLLLTATP-----  316

Query  176  SKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQ-PCKQYNLCHRRSQDPFGDLLK  234
             +  G  +H  +L   LD       +    + ++++             +  D   + + 
Sbjct  317  -EQLGRESHFARL-RLLDADRFYDYEAFVKEEEQYAPVADAVTALFSGEKLSDEAKNKIT  374

Query  235  KLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIH  294
            +L+ +     ++  L +   +   E ++  L+    +  L ++      L R   A +  
Sbjct  375  ELLSE----QDVEPLFKALESHASEDEIA-LARQELIDNLMDRHGTGRVLFRNTRAAIKG  429

Query  295  DTVRAVDALAALQDFYHREHVTKTQILC----AERRLLALFDDRKNELAHLATHGPENP-  349
              VR V  L       +   +    +L      E R + +      E       G E+  
Sbjct  430  FPVRNVHLLPLEIPSQYTTSMRVAGMLGGKLTPEARAMKML---YPEEIFQEFEGEESSW  486

Query  350  -KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN  408
             + +     L  +  +  S + ++      +A  L   L++++G     IRA +      
Sbjct  487  WQFDSRVNWLLEKVKAKRSEKILVIASRASTALQLEQALREREG-----IRATVF-----  536

Query  409  SSQSTHMTQRDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV  466
                  M+  ++ +    F  ++G   +L+ + +  EG +    N +V + L  N   + 
Sbjct  537  ---HEGMSIIERDKAAAYFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLE  593

Query  467  QARGR-----ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK  521
            Q  GR      + D  VY    TE S+ +      E L    E          +A Y A 
Sbjct  594  QRIGRLDRIGQKRDIDVYVPYLTETSQAILARWFQEGLNAFAETCPTG-----RAVYDAF  648

Query  522  IRDLQQAALTKRAAQ  536
               L          +
Sbjct  649  AERLIPILAAGGGEE  663


>sp|Q9KP70|RAPA_VIBCH RNA polymerase-associated protein RapA OS=Vibrio 
cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba 
N16961) OX=243277 GN=rapA PE=3 SV=1
Length=969

 Score = 81.4 bits (199),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 94/555 (17%), Positives = 185/555 (33%), Gaps = 70/555 (13%)

Query  5    SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ  62
             +Q  +           +++    G GKT  A  +  + + T    +++++V    L  Q
Sbjct  156  PHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQVLTGRAERILIVVP-ETLQHQ  214

Query  63   H----GEEFR---RMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE  115
                    F     + D    V   S    P     ++    D L  + +  + AL +  
Sbjct  215  WLVEMMRRFNLHFSIFDEERCVEAFSEADNPFETQQYVLCSLDFLRKSRQRFEQALEAEW  274

Query  116  EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGA  175
                       L+VVDE HH  +        S+  ++    A+  P VL LTA+P     
Sbjct  275  ----------DLLVVDEAHH-LEWHP--EKPSREYQVIEALAEQTPGVLLLTATP-----  316

Query  176  SKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQ-PCKQYNLCHRRSQDPFGDLLK  234
             +  G  +H  +L   LD       +    + ++++             +  D   + + 
Sbjct  317  -EQLGRESHFARL-RLLDADRFYDYEAFVKEEEQYAPVADAVTALFSGEKLSDEAKNKIT  374

Query  235  KLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIH  294
            +L+ +     ++  L +   +   E ++  L+    +  L ++      L R   A +  
Sbjct  375  ELLSE----QDVEPLFKALESHASEDEIA-LARQELIDNLMDRHGTGRVLFRNTRAAIKG  429

Query  295  DTVRAVDALAALQDFYHREHVTKTQILC----AERRLLALFDDRKNELAHLATHGPENP-  349
              VR V  L       +   +    +L      E R + +      E       G E+  
Sbjct  430  FPVRNVHLLPLEIPSQYTTSMRVAGMLGGKLTPEARAMKML---YPEEIFQEFEGEESSW  486

Query  350  -KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN  408
             + +     L  +  +  S + ++      +A  L   L++++G     IRA +      
Sbjct  487  WQFDSRVNWLLEKVKAKRSEKILVIASRASTALQLEQALREREG-----IRATVF-----  536

Query  409  SSQSTHMTQRDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV  466
                  M+  ++ +    F  ++G   +L+ + +  EG +    N +V + L  N   + 
Sbjct  537  ---HEGMSIIERDKAAAYFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLE  593

Query  467  QARGR-----ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK  521
            Q  GR      + D  VY    TE S+ +      E L    E          +A Y A 
Sbjct  594  QRIGRLDRIGQKRDIDVYVPYLTETSQAILARWFQEGLNAFAETCPTG-----RAVYDAF  648

Query  522  IRDLQQAALTKRAAQ  536
               L          +
Sbjct  649  AERLIPILAAGGGEE  663


>sp|Q4HZ68|DBP7_GIBZE ATP-dependent RNA helicase DBP7 OS=Gibberella 
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / 
NRRL 31084 / PH-1) OX=229533 GN=DBP7 PE=3 SV=1
Length=744

 Score = 81.4 bits (199),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 43/253 (17%), Positives = 76/253 (30%), Gaps = 32/253 (13%)

Query  314  HVTKTQILCAERRLLALFDDRKNELAHLATHG-----PENPKLEMLEKILQRQFSSSNSP  368
             +     L A++  + L   +    A    H      P   +L  L   L+  FS     
Sbjct  375  SLADATFLAAKKEDMELDVQKSEMKAPAQLHQYYSVVPAKLRLVTLISYLKSTFSRRGKT  434

Query  369  -RGIIFTRTRQSAHSLLLWLQQQQGLQTV------------DIRAQLLIGAGNSSQ----  411
             + IIF     S       L+     +               +     I +  S +    
Sbjct  435  MKAIIFISCADSVDFHYELLRDPNTTEAPVAASKEAESISKTVSKAAYITSPASPEVVLH  494

Query  412  --STHMTQRDQQEVIQKFQDGTLN-LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA  468
                 ++Q  +   ++ F       LL+ T V+  GLDIP  ++V+ Y    +    +  
Sbjct  495  RMHGSLSQPIRTATLKSFSACKSPSLLITTDVSSRGLDIPSVDLVIEYDPAFSFADHIHR  554

Query  469  RGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQ  527
             GR ARA +   A +       L        +E +        Q  D    +  +  L+ 
Sbjct  555  VGRTARAGKPGDALLF------LLPGTEEGYIELMKGSTTPTSQSYDSILQKGMMTKLEF  608

Query  528  AALTKRAAQAAQR  540
               T    +    
Sbjct  609  PVETTAKPEDGHS  621


 Score = 56.0 bits (133),  Expect = 1e-06, Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 44/124 (35%), Gaps = 16/124 (13%)

Query  22   IWLPTGAGKTRAAAYVAKR-----------HLETVDGAKVVVLVNRVHLVTQHGEEFRRM  70
            +   TG+GKT A                   +    GA  +++     L  Q      ++
Sbjct  193  VQAETGSGKTLAYLLPILHRVLLLSVKGGAQIHRDSGAFAIIVAPTRELAKQVHTVLEKL  252

Query  71   LD--GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLI  128
            +        T ++G    +A    + +  + L+ T   L   + + +    + L++   +
Sbjct  253  IRPFPWLVSTAITGGESKKAEKARIRKGVNFLVATPGRLADHIDNTKA---LNLSIVRWL  309

Query  129  VVDE  132
            ++DE
Sbjct  310  ILDE  313


>sp|B7MNR6|RAPA_ECO81 RNA polymerase-associated protein RapA OS=Escherichia 
coli O81 (strain ED1a) OX=585397 GN=rapA PE=3 
SV=1
Length=968

 Score = 81.4 bits (199),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 80/476 (17%), Positives = 152/476 (32%), Gaps = 44/476 (9%)

Query  5    SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ  62
             +Q  +           +++    G GKT  A  +  + L +    +V+++V    L  Q
Sbjct  156  PHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVP-ETLQHQ  214

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
               E  R  + R+ +         +    +      L+IC+   L  A  S +  EH+  
Sbjct  215  WLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICS---LDFARRSKQRLEHLCE  271

Query  123  TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG  180
              + L+VVDE HH    +D           +   Q A+ +P VL LTA+P      +  G
Sbjct  272  AEWDLLVVDEAHHLVWSEDAPSRE-----YQAIEQLAEHVPGVLLLTATP------EQLG  320

Query  181  AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI  240
              +H  +L   LD            +  + + +P                D L  L + I
Sbjct  321  MESHFARL-RLLDPNRFHDFAQFVEE--QKNYRPVADAVAMLLAGNKLSNDELNMLGEMI  377

Query  241  HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV  300
             +    P L          Q   +   +  +      RV   + R         +     
Sbjct  378  GEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIK  437

Query  301  DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG---PENPKLEMLEKI  357
              L        +          AE R   +    +        +      +P++E L   
Sbjct  438  LPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGY  497

Query  358  LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ  417
            L        S + ++      +A  L   L++++G++                    M+ 
Sbjct  498  LTSH----RSQKVLVICAKAATALQLEQVLREREGIRAAVFH-------------EGMSI  540

Query  418  RDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
             ++      F  +D    +L+ + +  EG +    + +V + L  N   + Q  GR
Sbjct  541  IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR  596


>sp|A5F5C5|RAPA_VIBC3 RNA polymerase-associated protein RapA OS=Vibrio 
cholerae serotype O1 (strain ATCC 39541 / Classical 
Ogawa 395 / O395) OX=345073 GN=rapA PE=3 SV=1
Length=969

 Score = 81.4 bits (199),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 94/555 (17%), Positives = 185/555 (33%), Gaps = 70/555 (13%)

Query  5    SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ  62
             +Q  +           +++    G GKT  A  +  + + T    +++++V    L  Q
Sbjct  156  PHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQVLTGRAERILIVVP-ETLQHQ  214

Query  63   H----GEEFR---RMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE  115
                    F     + D    V   S    P     ++    D L  + +  + AL +  
Sbjct  215  WLVEMMRRFNLHFSIFDEERCVEAFSEADNPFETQQYVLCSLDFLRKSRQRFEQALEAEW  274

Query  116  EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGA  175
                       L+VVDE HH  +        S+  ++    A+  P VL LTA+P     
Sbjct  275  ----------DLLVVDEAHH-LEWHP--EKPSREYQVIEALAEQTPGVLLLTATP-----  316

Query  176  SKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQ-PCKQYNLCHRRSQDPFGDLLK  234
             +  G  +H  +L   LD       +    + ++++             +  D   + + 
Sbjct  317  -EQLGRESHFARL-RLLDADRFYDYEAFVKEEEQYAPVADAVTALFSGEKLSDEAKNKIT  374

Query  235  KLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIH  294
            +L+ +     ++  L +   +   E ++  L+    +  L ++      L R   A +  
Sbjct  375  ELLSE----QDVEPLFKALESHASEDEIA-LARQELIDNLMDRHGTGRVLFRNTRAAIKG  429

Query  295  DTVRAVDALAALQDFYHREHVTKTQILC----AERRLLALFDDRKNELAHLATHGPENP-  349
              VR V  L       +   +    +L      E R + +      E       G E+  
Sbjct  430  FPVRNVHLLPLEIPSQYTTSMRVAGMLGGKLTPEARAMKML---YPEEIFQEFEGDESSW  486

Query  350  -KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN  408
             + +     L  +  +  S + ++      +A  L   L++++G     IRA +      
Sbjct  487  WQFDSRVNWLLEKVKAKRSEKILVIASRASTALQLEQALREREG-----IRATVF-----  536

Query  409  SSQSTHMTQRDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV  466
                  M+  ++ +    F  ++G   +L+ + +  EG +    N +V + L  N   + 
Sbjct  537  ---HEGMSIIERDKAAAYFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLE  593

Query  467  QARGR-----ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK  521
            Q  GR      + D  VY    TE S+ +      E L    E          +A Y A 
Sbjct  594  QRIGRLDRIGQKRDIDVYVPYLTETSQAILARWFQEGLNAFAETCPTG-----RAVYDAF  648

Query  522  IRDLQQAALTKRAAQ  536
               L          +
Sbjct  649  AERLIPILAAGGGEE  663


>sp|A2Q9T6|HAS1_ASPNC ATP-dependent RNA helicase has1 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=has1 PE=3 SV=1
Length=606

 Score = 81.0 bits (198),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 85/260 (33%), Gaps = 44/260 (17%)

Query  253  FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHR  312
             G      +  KL++   L      R+   HL+     +  +     +D    + +    
Sbjct  232  IGGANRRAEAEKLTKGVNLLIATPGRLLD-HLQNTPGFVFKNLKTLVIDEADRILEVGFE  290

Query  313  EHVTK-TQILCAERRLLALFDD----RKNELAHLAT----------HGPENPKLEMLEK-  356
            + + +  +IL +E R   LF      +  +LA ++           H  E+  +E LE+ 
Sbjct  291  DEMRQIVKILPSEERQTMLFSATQTTKVEDLARISLRPGPLYINVDHRKEHSTVEGLEQG  350

Query  357  -----------ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
                       +L      +   + I+F  +              + L  +D+    L G
Sbjct  351  YVICEADKRFLLLFSFLKRNLKKKIIVFFSSCNCVK------YHAELLNYIDLPVLELHG  404

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM  465
                       Q+ +     +F +     L+ T VA  GLDIP  + ++++    +    
Sbjct  405  --------KQKQQKRTNTFFEFCNAKQGTLICTDVAARGLDIPAVDWIIQFDPPDDTRDY  456

Query  466  VQARGRARAD--QSVYAFVA  483
            V   GR          + + 
Sbjct  457  VHRVGRTARGVNGKGRSLMF  476


 Score = 52.9 bits (125),  Expect = 8e-06, Method: Composition-based stats.
 Identities = 32/135 (24%), Positives = 45/135 (33%), Gaps = 9/135 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT---RAAAYVAKRHLETVDGAKVVVLV--NRVHLVT  61
            Q   I P L G++++    TG+GKT      A      L         VLV      L  
Sbjct  152  QQRTIPPLLAGRDVLGAAKTGSGKTLSFLIPAVEMLSALRFKPRNGTGVLVVSPTRELAL  211

Query  62   QHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
            Q     R ++         + G    RA    L +  +LLI T   L   L +       
Sbjct  212  QIFGVARELMAHHSQTYGIVIGGANRRAEAEKLTKGVNLLIATPGRLLDHLQNTPGFVFK  271

Query  121  ELTVFSLIVVDECHH  135
             L     +V+DE   
Sbjct  272  NLKT---LVIDEADR  283


>sp|Q3Z5V2|RAPA_SHISS RNA polymerase-associated protein RapA OS=Shigella 
sonnei (strain Ss046) OX=300269 GN=rapA PE=3 SV=1
Length=968

 Score = 81.4 bits (199),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 80/476 (17%), Positives = 152/476 (32%), Gaps = 44/476 (9%)

Query  5    SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ  62
             +Q  +           +++    G GKT  A  +  + L +    +V+++V    L  Q
Sbjct  156  PHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVP-ETLQHQ  214

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
               E  R  + R+ +         +    +      L+IC+   L  A  S +  EH+  
Sbjct  215  WLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICS---LDFARRSKQRLEHLCE  271

Query  123  TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG  180
              + L+VVDE HH    +D           +   Q A+ +P VL LTA+P      +  G
Sbjct  272  AEWDLLVVDEAHHLVWSEDAPSRE-----YQAIEQLAEHVPGVLLLTATP------EQLG  320

Query  181  AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI  240
              +H  +L   LD            +  + + +P                D L  L + I
Sbjct  321  MESHFARL-RLLDPNRFHDFAQFVEE--QKNYRPVADAVAMLLAGNKLSNDELNMLGEMI  377

Query  241  HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV  300
             +    P L          Q   +   +  +      RV   + R         +     
Sbjct  378  GEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIK  437

Query  301  DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG---PENPKLEMLEKI  357
              L        +          AE R   +    +        +      +P++E L   
Sbjct  438  LPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGY  497

Query  358  LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ  417
            L        S + ++      +A  L   L++++G++                    M+ 
Sbjct  498  LTSH----RSQKVLVICAKAATALQLEQVLREREGIRAAVFH-------------EGMSI  540

Query  418  RDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
             ++      F  +D    +L+ + +  EG +    + +V + L  N   + Q  GR
Sbjct  541  IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR  596


>sp|Q7UDT5|RAPA_SHIFL RNA polymerase-associated protein RapA OS=Shigella 
flexneri OX=623 GN=rapA PE=3 SV=3
Length=968

 Score = 81.4 bits (199),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 80/476 (17%), Positives = 152/476 (32%), Gaps = 44/476 (9%)

Query  5    SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ  62
             +Q  +           +++    G GKT  A  +  + L +    +V+++V    L  Q
Sbjct  156  PHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVP-ETLQHQ  214

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
               E  R  + R+ +         +    +      L+IC+   L  A  S +  EH+  
Sbjct  215  WLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICS---LDFARRSKQRLEHLCE  271

Query  123  TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG  180
              + L+VVDE HH    +D           +   Q A+ +P VL LTA+P      +  G
Sbjct  272  AEWDLLVVDEAHHLVWSEDAPSRE-----YQAIEQLAEHVPGVLLLTATP------EQLG  320

Query  181  AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI  240
              +H  +L   LD            +  + + +P                D L  L + I
Sbjct  321  MESHFARL-RLLDPNRFHDFAQFVEE--QKNYRPVADAVAMLLAGNKLSNDELNMLGEMI  377

Query  241  HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV  300
             +    P L          Q   +   +  +      RV   + R         +     
Sbjct  378  GEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIK  437

Query  301  DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG---PENPKLEMLEKI  357
              L        +          AE R   +    +        +      +P++E L   
Sbjct  438  LPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGY  497

Query  358  LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ  417
            L        S + ++      +A  L   L++++G++                    M+ 
Sbjct  498  LTSH----RSQKVLVICAKAATALQLEQVLREREGIRAAVFH-------------EGMSI  540

Query  418  RDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
             ++      F  +D    +L+ + +  EG +    + +V + L  N   + Q  GR
Sbjct  541  IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR  596


>sp|Q0T8D8|RAPA_SHIF8 RNA polymerase-associated protein RapA OS=Shigella 
flexneri serotype 5b (strain 8401) OX=373384 GN=rapA 
PE=3 SV=1
Length=968

 Score = 81.4 bits (199),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 80/476 (17%), Positives = 152/476 (32%), Gaps = 44/476 (9%)

Query  5    SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ  62
             +Q  +           +++    G GKT  A  +  + L +    +V+++V    L  Q
Sbjct  156  PHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVP-ETLQHQ  214

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
               E  R  + R+ +         +    +      L+IC+   L  A  S +  EH+  
Sbjct  215  WLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICS---LDFARRSKQRLEHLCE  271

Query  123  TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG  180
              + L+VVDE HH    +D           +   Q A+ +P VL LTA+P      +  G
Sbjct  272  AEWDLLVVDEAHHLVWSEDAPSRE-----YQAIEQLAEHVPGVLLLTATP------EQLG  320

Query  181  AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI  240
              +H  +L   LD            +  + + +P                D L  L + I
Sbjct  321  MESHFARL-RLLDPNRFHDFAQFVEE--QKNYRPVADAVAMLLAGNKLSNDELNMLGEMI  377

Query  241  HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV  300
             +    P L          Q   +   +  +      RV   + R         +     
Sbjct  378  GEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIK  437

Query  301  DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG---PENPKLEMLEKI  357
              L        +          AE R   +    +        +      +P++E L   
Sbjct  438  LPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGY  497

Query  358  LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ  417
            L        S + ++      +A  L   L++++G++                    M+ 
Sbjct  498  LTSH----RSQKVLVICAKAATALQLEQVLREREGIRAAVFH-------------EGMSI  540

Query  418  RDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
             ++      F  +D    +L+ + +  EG +    + +V + L  N   + Q  GR
Sbjct  541  IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR  596


>sp|B2U265|RAPA_SHIB3 RNA polymerase-associated protein RapA OS=Shigella 
boydii serotype 18 (strain CDC 3083-94 / BS512) OX=344609 
GN=rapA PE=3 SV=1
Length=968

 Score = 81.4 bits (199),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 80/476 (17%), Positives = 152/476 (32%), Gaps = 44/476 (9%)

Query  5    SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ  62
             +Q  +           +++    G GKT  A  +  + L +    +V+++V    L  Q
Sbjct  156  PHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVP-ETLQHQ  214

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
               E  R  + R+ +         +    +      L+IC+   L  A  S +  EH+  
Sbjct  215  WLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICS---LDFARRSKQRLEHLCE  271

Query  123  TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG  180
              + L+VVDE HH    +D           +   Q A+ +P VL LTA+P      +  G
Sbjct  272  AEWDLLVVDEAHHLVWSEDAPSRE-----YQAIEQLAEHVPGVLLLTATP------EQLG  320

Query  181  AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI  240
              +H  +L   LD            +  + + +P                D L  L + I
Sbjct  321  MESHFARL-RLLDPNRFHDFAQFVEE--QKNYRPVADAVAMLLAGNKLSNDELNMLGEMI  377

Query  241  HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV  300
             +    P L          Q   +   +  +      RV   + R         +     
Sbjct  378  GEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIK  437

Query  301  DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG---PENPKLEMLEKI  357
              L        +          AE R   +    +        +      +P++E L   
Sbjct  438  LPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGY  497

Query  358  LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ  417
            L        S + ++      +A  L   L++++G++                    M+ 
Sbjct  498  LTSH----RSQKVLVICAKAATALQLEQVLREREGIRAAVFH-------------EGMSI  540

Query  418  RDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
             ++      F  +D    +L+ + +  EG +    + +V + L  N   + Q  GR
Sbjct  541  IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR  596


>sp|Q1RGE0|RAPA_ECOUT RNA polymerase-associated protein RapA OS=Escherichia 
coli (strain UTI89 / UPEC) OX=364106 GN=rapA PE=3 
SV=1
Length=968

 Score = 81.4 bits (199),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 80/476 (17%), Positives = 152/476 (32%), Gaps = 44/476 (9%)

Query  5    SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ  62
             +Q  +           +++    G GKT  A  +  + L +    +V+++V    L  Q
Sbjct  156  PHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVP-ETLQHQ  214

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
               E  R  + R+ +         +    +      L+IC+   L  A  S +  EH+  
Sbjct  215  WLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICS---LDFARRSKQRLEHLCE  271

Query  123  TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG  180
              + L+VVDE HH    +D           +   Q A+ +P VL LTA+P      +  G
Sbjct  272  AEWDLLVVDEAHHLVWSEDAPSRE-----YQAIEQLAEHVPGVLLLTATP------EQLG  320

Query  181  AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI  240
              +H  +L   LD            +  + + +P                D L  L + I
Sbjct  321  MESHFARL-RLLDPNRFHDFAQFVEE--QKNYRPVADAVAMLLAGNKLSNDELNMLGEMI  377

Query  241  HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV  300
             +    P L          Q   +   +  +      RV   + R         +     
Sbjct  378  GEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIK  437

Query  301  DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG---PENPKLEMLEKI  357
              L        +          AE R   +    +        +      +P++E L   
Sbjct  438  LPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGY  497

Query  358  LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ  417
            L        S + ++      +A  L   L++++G++                    M+ 
Sbjct  498  LTSH----RSQKVLVICAKAATALQLEQVLREREGIRAAVFH-------------EGMSI  540

Query  418  RDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
             ++      F  +D    +L+ + +  EG +    + +V + L  N   + Q  GR
Sbjct  541  IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR  596


>sp|B1LFZ3|RAPA_ECOSM RNA polymerase-associated protein RapA OS=Escherichia 
coli (strain SMS-3-5 / SECEC) OX=439855 GN=rapA 
PE=3 SV=1
Length=968

 Score = 81.4 bits (199),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 80/476 (17%), Positives = 152/476 (32%), Gaps = 44/476 (9%)

Query  5    SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ  62
             +Q  +           +++    G GKT  A  +  + L +    +V+++V    L  Q
Sbjct  156  PHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVP-ETLQHQ  214

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
               E  R  + R+ +         +    +      L+IC+   L  A  S +  EH+  
Sbjct  215  WLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICS---LDFARRSKQRLEHLCE  271

Query  123  TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG  180
              + L+VVDE HH    +D           +   Q A+ +P VL LTA+P      +  G
Sbjct  272  AEWDLLVVDEAHHLVWSEDAPSRE-----YQAIEQLAEHVPGVLLLTATP------EQLG  320

Query  181  AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI  240
              +H  +L   LD            +  + + +P                D L  L + I
Sbjct  321  MESHFARL-RLLDPNRFHDFAQFVEE--QKNYRPVADAVAMLLAGNKLSNDELNMLGEMI  377

Query  241  HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV  300
             +    P L          Q   +   +  +      RV   + R         +     
Sbjct  378  GEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIK  437

Query  301  DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG---PENPKLEMLEKI  357
              L        +          AE R   +    +        +      +P++E L   
Sbjct  438  LPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGY  497

Query  358  LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ  417
            L        S + ++      +A  L   L++++G++                    M+ 
Sbjct  498  LTSH----RSQKVLVICAKAATALQLEQVLREREGIRAAVFH-------------EGMSI  540

Query  418  RDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
             ++      F  +D    +L+ + +  EG +    + +V + L  N   + Q  GR
Sbjct  541  IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR  596


>sp|B6HZ39|RAPA_ECOSE RNA polymerase-associated protein RapA OS=Escherichia 
coli (strain SE11) OX=409438 GN=rapA PE=3 SV=1
Length=968

 Score = 81.4 bits (199),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 80/476 (17%), Positives = 152/476 (32%), Gaps = 44/476 (9%)

Query  5    SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ  62
             +Q  +           +++    G GKT  A  +  + L +    +V+++V    L  Q
Sbjct  156  PHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVP-ETLQHQ  214

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
               E  R  + R+ +         +    +      L+IC+   L  A  S +  EH+  
Sbjct  215  WLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICS---LDFARRSKQRLEHLCE  271

Query  123  TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG  180
              + L+VVDE HH    +D           +   Q A+ +P VL LTA+P      +  G
Sbjct  272  AEWDLLVVDEAHHLVWSEDAPSRE-----YQAIEQLAEHVPGVLLLTATP------EQLG  320

Query  181  AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI  240
              +H  +L   LD            +  + + +P                D L  L + I
Sbjct  321  MESHFARL-RLLDPNRFHDFAQFVEE--QKNYRPVADAVAMLLAGNKLSNDELNMLGEMI  377

Query  241  HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV  300
             +    P L          Q   +   +  +      RV   + R         +     
Sbjct  378  GEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIK  437

Query  301  DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG---PENPKLEMLEKI  357
              L        +          AE R   +    +        +      +P++E L   
Sbjct  438  LPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGY  497

Query  358  LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ  417
            L        S + ++      +A  L   L++++G++                    M+ 
Sbjct  498  LTSH----RSQKVLVICAKAATALQLEQVLREREGIRAAVFH-------------EGMSI  540

Query  418  RDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
             ++      F  +D    +L+ + +  EG +    + +V + L  N   + Q  GR
Sbjct  541  IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR  596


>sp|B7N7T3|RAPA_ECOLU RNA polymerase-associated protein RapA OS=Escherichia 
coli O17:K52:H18 (strain UMN026 / ExPEC) OX=585056 
GN=rapA PE=3 SV=1
Length=968

 Score = 81.4 bits (199),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 80/476 (17%), Positives = 152/476 (32%), Gaps = 44/476 (9%)

Query  5    SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ  62
             +Q  +           +++    G GKT  A  +  + L +    +V+++V    L  Q
Sbjct  156  PHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVP-ETLQHQ  214

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
               E  R  + R+ +         +    +      L+IC+   L  A  S +  EH+  
Sbjct  215  WLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICS---LDFARRSKQRLEHLCE  271

Query  123  TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG  180
              + L+VVDE HH    +D           +   Q A+ +P VL LTA+P      +  G
Sbjct  272  AEWDLLVVDEAHHLVWSEDAPSRE-----YQAIEQLAEHVPGVLLLTATP------EQLG  320

Query  181  AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI  240
              +H  +L   LD            +  + + +P                D L  L + I
Sbjct  321  MESHFARL-RLLDPNRFHDFAQFVEE--QKNYRPVADAVAMLLAGNKLSNDELNMLGEMI  377

Query  241  HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV  300
             +    P L          Q   +   +  +      RV   + R         +     
Sbjct  378  GEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIK  437

Query  301  DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG---PENPKLEMLEKI  357
              L        +          AE R   +    +        +      +P++E L   
Sbjct  438  LPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGY  497

Query  358  LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ  417
            L        S + ++      +A  L   L++++G++                    M+ 
Sbjct  498  LTSH----RSQKVLVICAKAATALQLEQVLREREGIRAAVFH-------------EGMSI  540

Query  418  RDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
             ++      F  +D    +L+ + +  EG +    + +V + L  N   + Q  GR
Sbjct  541  IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR  596


>sp|P60240|RAPA_ECOLI RNA polymerase-associated protein RapA OS=Escherichia 
coli (strain K12) OX=83333 GN=rapA PE=1 SV=2
Length=968

 Score = 81.4 bits (199),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 80/476 (17%), Positives = 152/476 (32%), Gaps = 44/476 (9%)

Query  5    SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ  62
             +Q  +           +++    G GKT  A  +  + L +    +V+++V    L  Q
Sbjct  156  PHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVP-ETLQHQ  214

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
               E  R  + R+ +         +    +      L+IC+   L  A  S +  EH+  
Sbjct  215  WLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICS---LDFARRSKQRLEHLCE  271

Query  123  TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG  180
              + L+VVDE HH    +D           +   Q A+ +P VL LTA+P      +  G
Sbjct  272  AEWDLLVVDEAHHLVWSEDAPSRE-----YQAIEQLAEHVPGVLLLTATP------EQLG  320

Query  181  AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI  240
              +H  +L   LD            +  + + +P                D L  L + I
Sbjct  321  MESHFARL-RLLDPNRFHDFAQFVEE--QKNYRPVADAVAMLLAGNKLSNDELNMLGEMI  377

Query  241  HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV  300
             +    P L          Q   +   +  +      RV   + R         +     
Sbjct  378  GEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIK  437

Query  301  DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG---PENPKLEMLEKI  357
              L        +          AE R   +    +        +      +P++E L   
Sbjct  438  LPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGY  497

Query  358  LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ  417
            L        S + ++      +A  L   L++++G++                    M+ 
Sbjct  498  LTSH----RSQKVLVICAKAATALQLEQVLREREGIRAAVFH-------------EGMSI  540

Query  418  RDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
             ++      F  +D    +L+ + +  EG +    + +V + L  N   + Q  GR
Sbjct  541  IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR  596


>sp|B1IRB9|RAPA_ECOLC RNA polymerase-associated protein RapA OS=Escherichia 
coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 
/ NCIMB 8545 / WDCM 00012 / Crooks) OX=481805 GN=rapA PE=3 SV=1
Length=968

 Score = 81.4 bits (199),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 80/476 (17%), Positives = 152/476 (32%), Gaps = 44/476 (9%)

Query  5    SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ  62
             +Q  +           +++    G GKT  A  +  + L +    +V+++V    L  Q
Sbjct  156  PHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVP-ETLQHQ  214

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
               E  R  + R+ +         +    +      L+IC+   L  A  S +  EH+  
Sbjct  215  WLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICS---LDFARRSKQRLEHLCE  271

Query  123  TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG  180
              + L+VVDE HH    +D           +   Q A+ +P VL LTA+P      +  G
Sbjct  272  AEWDLLVVDEAHHLVWSEDAPSRE-----YQAIEQLAEHVPGVLLLTATP------EQLG  320

Query  181  AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI  240
              +H  +L   LD            +  + + +P                D L  L + I
Sbjct  321  MESHFARL-RLLDPNRFHDFAQFVEE--QKNYRPVADAVAMLLAGNKLSNDELNMLGEMI  377

Query  241  HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV  300
             +    P L          Q   +   +  +      RV   + R         +     
Sbjct  378  GEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIK  437

Query  301  DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG---PENPKLEMLEKI  357
              L        +          AE R   +    +        +      +P++E L   
Sbjct  438  LPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGY  497

Query  358  LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ  417
            L        S + ++      +A  L   L++++G++                    M+ 
Sbjct  498  LTSH----RSQKVLVICAKAATALQLEQVLREREGIRAAVFH-------------EGMSI  540

Query  418  RDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
             ++      F  +D    +L+ + +  EG +    + +V + L  N   + Q  GR
Sbjct  541  IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR  596


>sp|Q8FL92|RAPA_ECOL6 RNA polymerase-associated protein RapA OS=Escherichia 
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) 
OX=199310 GN=rapA PE=3 SV=3
Length=968

 Score = 81.4 bits (199),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 80/476 (17%), Positives = 152/476 (32%), Gaps = 44/476 (9%)

Query  5    SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ  62
             +Q  +           +++    G GKT  A  +  + L +    +V+++V    L  Q
Sbjct  156  PHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVP-ETLQHQ  214

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
               E  R  + R+ +         +    +      L+IC+   L  A  S +  EH+  
Sbjct  215  WLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICS---LDFARRSKQRLEHLCE  271

Query  123  TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG  180
              + L+VVDE HH    +D           +   Q A+ +P VL LTA+P      +  G
Sbjct  272  AEWDLLVVDEAHHLVWSEDAPSRE-----YQAIEQLAEHVPGVLLLTATP------EQLG  320

Query  181  AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI  240
              +H  +L   LD            +  + + +P                D L  L + I
Sbjct  321  MESHFARL-RLLDPNRFHDFAQFVEE--QKNYRPVADAVAMLLAGNKLSNDELNMLGEMI  377

Query  241  HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV  300
             +    P L          Q   +   +  +      RV   + R         +     
Sbjct  378  GEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIK  437

Query  301  DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG---PENPKLEMLEKI  357
              L        +          AE R   +    +        +      +P++E L   
Sbjct  438  LPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGY  497

Query  358  LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ  417
            L        S + ++      +A  L   L++++G++                    M+ 
Sbjct  498  LTSH----RSQKVLVICAKAATALQLEQVLREREGIRAAVFH-------------EGMSI  540

Query  418  RDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
             ++      F  +D    +L+ + +  EG +    + +V + L  N   + Q  GR
Sbjct  541  IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR  596


>sp|Q0TLT1|RAPA_ECOL5 RNA polymerase-associated protein RapA OS=Escherichia 
coli O6:K15:H31 (strain 536 / UPEC) OX=362663 
GN=rapA PE=3 SV=1
Length=968

 Score = 81.4 bits (199),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 80/476 (17%), Positives = 152/476 (32%), Gaps = 44/476 (9%)

Query  5    SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ  62
             +Q  +           +++    G GKT  A  +  + L +    +V+++V    L  Q
Sbjct  156  PHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVP-ETLQHQ  214

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
               E  R  + R+ +         +    +      L+IC+   L  A  S +  EH+  
Sbjct  215  WLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICS---LDFARRSKQRLEHLCE  271

Query  123  TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG  180
              + L+VVDE HH    +D           +   Q A+ +P VL LTA+P      +  G
Sbjct  272  AEWDLLVVDEAHHLVWSEDAPSRE-----YQAIEQLAEHVPGVLLLTATP------EQLG  320

Query  181  AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI  240
              +H  +L   LD            +  + + +P                D L  L + I
Sbjct  321  MESHFARL-RLLDPNRFHDFAQFVEE--QKNYRPVADAVAMLLAGNKLSNDELNMLGEMI  377

Query  241  HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV  300
             +    P L          Q   +   +  +      RV   + R         +     
Sbjct  378  GEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIK  437

Query  301  DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG---PENPKLEMLEKI  357
              L        +          AE R   +    +        +      +P++E L   
Sbjct  438  LPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGY  497

Query  358  LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ  417
            L        S + ++      +A  L   L++++G++                    M+ 
Sbjct  498  LTSH----RSQKVLVICAKAATALQLEQVLREREGIRAAVFH-------------EGMSI  540

Query  418  RDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
             ++      F  +D    +L+ + +  EG +    + +V + L  N   + Q  GR
Sbjct  541  IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR  596


>sp|C4ZPY3|RAPA_ECOBW RNA polymerase-associated protein RapA OS=Escherichia 
coli (strain K12 / MC4100 / BW2952) OX=595496 
GN=rapA PE=3 SV=1
Length=968

 Score = 81.4 bits (199),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 80/476 (17%), Positives = 152/476 (32%), Gaps = 44/476 (9%)

Query  5    SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ  62
             +Q  +           +++    G GKT  A  +  + L +    +V+++V    L  Q
Sbjct  156  PHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVP-ETLQHQ  214

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
               E  R  + R+ +         +    +      L+IC+   L  A  S +  EH+  
Sbjct  215  WLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICS---LDFARRSKQRLEHLCE  271

Query  123  TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG  180
              + L+VVDE HH    +D           +   Q A+ +P VL LTA+P      +  G
Sbjct  272  AEWDLLVVDEAHHLVWSEDAPSRE-----YQAIEQLAEHVPGVLLLTATP------EQLG  320

Query  181  AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI  240
              +H  +L   LD            +  + + +P                D L  L + I
Sbjct  321  MESHFARL-RLLDPNRFHDFAQFVEE--QKNYRPVADAVAMLLAGNKLSNDELNMLGEMI  377

Query  241  HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV  300
             +    P L          Q   +   +  +      RV   + R         +     
Sbjct  378  GEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIK  437

Query  301  DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG---PENPKLEMLEKI  357
              L        +          AE R   +    +        +      +P++E L   
Sbjct  438  LPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGY  497

Query  358  LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ  417
            L        S + ++      +A  L   L++++G++                    M+ 
Sbjct  498  LTSH----RSQKVLVICAKAATALQLEQVLREREGIRAAVFH-------------EGMSI  540

Query  418  RDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
             ++      F  +D    +L+ + +  EG +    + +V + L  N   + Q  GR
Sbjct  541  IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR  596


>sp|B7NHG5|RAPA_ECO7I RNA polymerase-associated protein RapA OS=Escherichia 
coli O7:K1 (strain IAI39 / ExPEC) OX=585057 GN=rapA 
PE=3 SV=1
Length=968

 Score = 81.4 bits (199),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 80/476 (17%), Positives = 152/476 (32%), Gaps = 44/476 (9%)

Query  5    SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ  62
             +Q  +           +++    G GKT  A  +  + L +    +V+++V    L  Q
Sbjct  156  PHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVP-ETLQHQ  214

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
               E  R  + R+ +         +    +      L+IC+   L  A  S +  EH+  
Sbjct  215  WLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICS---LDFARRSKQRLEHLCE  271

Query  123  TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG  180
              + L+VVDE HH    +D           +   Q A+ +P VL LTA+P      +  G
Sbjct  272  AEWDLLVVDEAHHLVWSEDAPSRE-----YQAIEQLAEHVPGVLLLTATP------EQLG  320

Query  181  AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI  240
              +H  +L   LD            +  + + +P                D L  L + I
Sbjct  321  MESHFARL-RLLDPNRFHDFAQFVEE--QKNYRPVADAVAMLLAGNKLSNDELNMLGEMI  377

Query  241  HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV  300
             +    P L          Q   +   +  +      RV   + R         +     
Sbjct  378  GEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIK  437

Query  301  DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG---PENPKLEMLEKI  357
              L        +          AE R   +    +        +      +P++E L   
Sbjct  438  LPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGY  497

Query  358  LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ  417
            L        S + ++      +A  L   L++++G++                    M+ 
Sbjct  498  LTSH----RSQKVLVICAKAATALQLEQVLREREGIRAAVFH-------------EGMSI  540

Query  418  RDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
             ++      F  +D    +L+ + +  EG +    + +V + L  N   + Q  GR
Sbjct  541  IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR  596


>sp|P60241|RAPA_ECO57 RNA polymerase-associated protein RapA OS=Escherichia 
coli O157:H7 OX=83334 GN=rapA PE=3 SV=2
Length=968

 Score = 81.4 bits (199),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 80/476 (17%), Positives = 152/476 (32%), Gaps = 44/476 (9%)

Query  5    SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ  62
             +Q  +           +++    G GKT  A  +  + L +    +V+++V    L  Q
Sbjct  156  PHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVP-ETLQHQ  214

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
               E  R  + R+ +         +    +      L+IC+   L  A  S +  EH+  
Sbjct  215  WLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICS---LDFARRSKQRLEHLCE  271

Query  123  TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG  180
              + L+VVDE HH    +D           +   Q A+ +P VL LTA+P      +  G
Sbjct  272  AEWDLLVVDEAHHLVWSEDAPSRE-----YQAIEQLAEHVPGVLLLTATP------EQLG  320

Query  181  AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI  240
              +H  +L   LD            +  + + +P                D L  L + I
Sbjct  321  MESHFARL-RLLDPNRFHDFAQFVEE--QKNYRPVADAVAMLLAGNKLSNDELNMLGEMI  377

Query  241  HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV  300
             +    P L          Q   +   +  +      RV   + R         +     
Sbjct  378  GEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIK  437

Query  301  DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG---PENPKLEMLEKI  357
              L        +          AE R   +    +        +      +P++E L   
Sbjct  438  LPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGY  497

Query  358  LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ  417
            L        S + ++      +A  L   L++++G++                    M+ 
Sbjct  498  LTSH----RSQKVLVICAKAATALQLEQVLREREGIRAAVFH-------------EGMSI  540

Query  418  RDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
             ++      F  +D    +L+ + +  EG +    + +V + L  N   + Q  GR
Sbjct  541  IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR  596


>sp|B7L4I0|RAPA_ECO55 RNA polymerase-associated protein RapA OS=Escherichia 
coli (strain 55989 / EAEC) OX=585055 GN=rapA PE=3 
SV=1
Length=968

 Score = 81.4 bits (199),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 80/476 (17%), Positives = 152/476 (32%), Gaps = 44/476 (9%)

Query  5    SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ  62
             +Q  +           +++    G GKT  A  +  + L +    +V+++V    L  Q
Sbjct  156  PHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVP-ETLQHQ  214

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
               E  R  + R+ +         +    +      L+IC+   L  A  S +  EH+  
Sbjct  215  WLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICS---LDFARRSKQRLEHLCE  271

Query  123  TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG  180
              + L+VVDE HH    +D           +   Q A+ +P VL LTA+P      +  G
Sbjct  272  AEWDLLVVDEAHHLVWSEDAPSRE-----YQAIEQLAEHVPGVLLLTATP------EQLG  320

Query  181  AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI  240
              +H  +L   LD            +  + + +P                D L  L + I
Sbjct  321  MESHFARL-RLLDPNRFHDFAQFVEE--QKNYRPVADAVAMLLAGNKLSNDELNMLGEMI  377

Query  241  HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV  300
             +    P L          Q   +   +  +      RV   + R         +     
Sbjct  378  GEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIK  437

Query  301  DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG---PENPKLEMLEKI  357
              L        +          AE R   +    +        +      +P++E L   
Sbjct  438  LPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGY  497

Query  358  LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ  417
            L        S + ++      +A  L   L++++G++                    M+ 
Sbjct  498  LTSH----RSQKVLVICAKAATALQLEQVLREREGIRAAVFH-------------EGMSI  540

Query  418  RDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
             ++      F  +D    +L+ + +  EG +    + +V + L  N   + Q  GR
Sbjct  541  IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR  596


>sp|B7MAI2|RAPA_ECO45 RNA polymerase-associated protein RapA OS=Escherichia 
coli O45:K1 (strain S88 / ExPEC) OX=585035 GN=rapA 
PE=3 SV=1
Length=968

 Score = 81.4 bits (199),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 80/476 (17%), Positives = 152/476 (32%), Gaps = 44/476 (9%)

Query  5    SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ  62
             +Q  +           +++    G GKT  A  +  + L +    +V+++V    L  Q
Sbjct  156  PHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVP-ETLQHQ  214

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
               E  R  + R+ +         +    +      L+IC+   L  A  S +  EH+  
Sbjct  215  WLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICS---LDFARRSKQRLEHLCE  271

Query  123  TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG  180
              + L+VVDE HH    +D           +   Q A+ +P VL LTA+P      +  G
Sbjct  272  AEWDLLVVDEAHHLVWSEDAPSRE-----YQAIEQLAEHVPGVLLLTATP------EQLG  320

Query  181  AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI  240
              +H  +L   LD            +  + + +P                D L  L + I
Sbjct  321  MESHFARL-RLLDPNRFHDFAQFVEE--QKNYRPVADAVAMLLAGNKLSNDELNMLGEMI  377

Query  241  HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV  300
             +    P L          Q   +   +  +      RV   + R         +     
Sbjct  378  GEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIK  437

Query  301  DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG---PENPKLEMLEKI  357
              L        +          AE R   +    +        +      +P++E L   
Sbjct  438  LPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGY  497

Query  358  LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ  417
            L        S + ++      +A  L   L++++G++                    M+ 
Sbjct  498  LTSH----RSQKVLVICAKAATALQLEQVLREREGIRAAVFH-------------EGMSI  540

Query  418  RDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
             ++      F  +D    +L+ + +  EG +    + +V + L  N   + Q  GR
Sbjct  541  IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR  596


>sp|B7UIA5|RAPA_ECO27 RNA polymerase-associated protein RapA OS=Escherichia 
coli O127:H6 (strain E2348/69 / EPEC) OX=574521 
GN=rapA PE=3 SV=1
Length=968

 Score = 81.4 bits (199),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 80/476 (17%), Positives = 152/476 (32%), Gaps = 44/476 (9%)

Query  5    SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ  62
             +Q  +           +++    G GKT  A  +  + L +    +V+++V    L  Q
Sbjct  156  PHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVP-ETLQHQ  214

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
               E  R  + R+ +         +    +      L+IC+   L  A  S +  EH+  
Sbjct  215  WLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICS---LDFARRSKQRLEHLCE  271

Query  123  TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG  180
              + L+VVDE HH    +D           +   Q A+ +P VL LTA+P      +  G
Sbjct  272  AEWDLLVVDEAHHLVWSEDAPSRE-----YQAIEQLAEHVPGVLLLTATP------EQLG  320

Query  181  AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI  240
              +H  +L   LD            +  + + +P                D L  L + I
Sbjct  321  MESHFARL-RLLDPNRFHDFAQFVEE--QKNYRPVADAVAMLLAGNKLSNDELNMLGEMI  377

Query  241  HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV  300
             +    P L          Q   +   +  +      RV   + R         +     
Sbjct  378  GEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIK  437

Query  301  DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG---PENPKLEMLEKI  357
              L        +          AE R   +    +        +      +P++E L   
Sbjct  438  LPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGY  497

Query  358  LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ  417
            L        S + ++      +A  L   L++++G++                    M+ 
Sbjct  498  LTSH----RSQKVLVICAKAATALQLEQVLREREGIRAAVFH-------------EGMSI  540

Query  418  RDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
             ++      F  +D    +L+ + +  EG +    + +V + L  N   + Q  GR
Sbjct  541  IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR  596


>sp|Q2UMY7|MAK5_ASPOR ATP-dependent RNA helicase mak5 OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=mak5 
PE=3 SV=1
Length=757

 Score = 81.0 bits (198),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 52/143 (36%), Gaps = 22/143 (15%)

Query  350  KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
            K   L  +L          R ++FT +  +   L   LQ  Q                  
Sbjct  473  KDLFLYTLLLYH----PKHRTLVFTNSISAVRRLTQLLQTLQLPAL--------------  514

Query  410  SQSTHMTQRDQQEVIQKFQDGTLN---LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV  466
            +  + M Q+ +   +++F   + +   +LVAT VA  GLDI   + VV Y       + V
Sbjct  515  ALHSSMAQKARLRSVERFSSPSSDPSSILVATDVAARGLDIKGIDFVVHYHAPRTADAYV  574

Query  467  QARGR-ARADQSVYAFVATEGSR  488
               GR ARA  S  + +      
Sbjct  575  HRSGRTARAGASGKSVIICSPDE  597


 Score = 46.7 bits (109),  Expect = 7e-04, Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 48/139 (35%), Gaps = 21/139 (15%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK-------------VVVLVNRVHLVT  61
            L+G+++I    TG+GKT A       +      +K              +VL     L  
Sbjct  219  LDGRDVIGKASTGSGKTLAFGIPILEYYLEKLRSKTQKDSEKTETTPIALVLSPTRELAH  278

Query  62   Q---HGEEFRRMLDGRW-TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE  117
            Q   H  E      G    +  L+G +  +     +    D++I T   +   L+S    
Sbjct  279  QLAKHIGEVVSHAPGVNARIALLTGGLSLQKQ-QRVLTNADIVIGTPGRVWEVLSSG--H  335

Query  118  EHVE-LTVFSLIVVDECHH  135
              +  +     +V+DE   
Sbjct  336  GLIRKMQAIKFLVIDEADR  354


>sp|A1A7A6|RAPA_ECOK1 RNA polymerase-associated protein RapA OS=Escherichia 
coli O1:K1 / APEC OX=405955 GN=rapA PE=3 SV=1
Length=968

 Score = 81.4 bits (199),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 80/476 (17%), Positives = 152/476 (32%), Gaps = 44/476 (9%)

Query  5    SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ  62
             +Q  +           +++    G GKT  A  +  + L +    +V+++V    L  Q
Sbjct  156  PHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVP-ETLQHQ  214

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
               E  R  + R+ +         +    +      L+IC+   L  A  S +  EH+  
Sbjct  215  WLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICS---LDFARRSKQRLEHLCE  271

Query  123  TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG  180
              + L+VVDE HH    +D           +   Q A+ +P VL LTA+P      +  G
Sbjct  272  AEWDLLVVDEAHHLVWSEDAPSRE-----YQAIEQLAEHVPGVLLLTATP------EQLG  320

Query  181  AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI  240
              +H  +L   LD            +  + + +P                D L  L + I
Sbjct  321  MESHFARL-RLLDPNRFHDFAQFVEE--QKNYRPVADAVAMLLAGNKLSNDELNMLGEMI  377

Query  241  HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV  300
             +    P L          Q   +   +  +      RV   + R         +     
Sbjct  378  GEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIK  437

Query  301  DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG---PENPKLEMLEKI  357
              L        +          AE R   +    +        +      +P++E L   
Sbjct  438  LPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGY  497

Query  358  LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ  417
            L        S + ++      +A  L   L++++G++                    M+ 
Sbjct  498  LTSH----RSQKVLVICAKAATALQLEQVLREREGIRAAVFH-------------EGMSI  540

Query  418  RDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
             ++      F  +D    +L+ + +  EG +    + +V + L  N   + Q  GR
Sbjct  541  IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR  596


>sp|B7M0F4|RAPA_ECO8A RNA polymerase-associated protein RapA OS=Escherichia 
coli O8 (strain IAI1) OX=585034 GN=rapA PE=3 SV=1
Length=968

 Score = 81.4 bits (199),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 80/476 (17%), Positives = 152/476 (32%), Gaps = 44/476 (9%)

Query  5    SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ  62
             +Q  +           +++    G GKT  A  +  + L +    +V+++V    L  Q
Sbjct  156  PHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVP-ETLQHQ  214

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
               E  R  + R+ +         +    +      L+IC+   L  A  S +  EH+  
Sbjct  215  WLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICS---LDFARRSKQRLEHLCE  271

Query  123  TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG  180
              + L+VVDE HH    +D           +   Q A+ +P VL LTA+P      +  G
Sbjct  272  AEWDLLVVDEAHHLVWSEDAPSRE-----YQAIEQLAEHVPGVLLLTATP------EQLG  320

Query  181  AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI  240
              +H  +L   LD            +  + + +P                D L  L + I
Sbjct  321  MESHFARL-RLLDPNRFHDFAQFVEE--QKNYRPVADAVAMLLAGNKLSNDELNMLGEMI  377

Query  241  HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV  300
             +    P L          Q   +   +  +      RV   + R         +     
Sbjct  378  GEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIK  437

Query  301  DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG---PENPKLEMLEKI  357
              L        +          AE R   +    +        +      +P++E L   
Sbjct  438  LPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGY  497

Query  358  LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ  417
            L        S + ++      +A  L   L++++G++                    M+ 
Sbjct  498  LTSH----RSQKVLVICAKAATALQLEQVLREREGIRAAVFH-------------EGMSI  540

Query  418  RDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
             ++      F  +D    +L+ + +  EG +    + +V + L  N   + Q  GR
Sbjct  541  IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR  596


>sp|A7ZHF0|RAPA_ECO24 RNA polymerase-associated protein RapA OS=Escherichia 
coli O139:H28 (strain E24377A / ETEC) OX=331111 
GN=rapA PE=3 SV=1
Length=968

 Score = 81.4 bits (199),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 80/476 (17%), Positives = 152/476 (32%), Gaps = 44/476 (9%)

Query  5    SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ  62
             +Q  +           +++    G GKT  A  +  + L +    +V+++V    L  Q
Sbjct  156  PHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVP-ETLQHQ  214

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
               E  R  + R+ +         +    +      L+IC+   L  A  S +  EH+  
Sbjct  215  WLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICS---LDFARRSKQRLEHLCE  271

Query  123  TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG  180
              + L+VVDE HH    +D           +   Q A+ +P VL LTA+P      +  G
Sbjct  272  AEWDLLVVDEAHHLVWSEDAPSRE-----YQAIEQLAEHVPGVLLLTATP------EQLG  320

Query  181  AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI  240
              +H  +L   LD            +  + + +P                D L  L + I
Sbjct  321  MESHFARL-RLLDPNRFHDFAQFVEE--QKNYRPVADAVAMLLAGNKLSNDELNMLGEMI  377

Query  241  HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV  300
             +    P L          Q   +   +  +      RV   + R         +     
Sbjct  378  GEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIK  437

Query  301  DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG---PENPKLEMLEKI  357
              L        +          AE R   +    +        +      +P++E L   
Sbjct  438  LPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGY  497

Query  358  LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ  417
            L        S + ++      +A  L   L++++G++                    M+ 
Sbjct  498  LTSH----RSQKVLVICAKAATALQLEQVLREREGIRAAVFH-------------EGMSI  540

Query  418  RDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
             ++      F  +D    +L+ + +  EG +    + +V + L  N   + Q  GR
Sbjct  541  IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR  596


>sp|A3LNR6|HAS1_PICST ATP-dependent RNA helicase HAS1 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=HAS1 PE=3 SV=2
Length=567

 Score = 80.6 bits (197),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 81/260 (31%), Gaps = 44/260 (17%)

Query  253  FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHR  312
             G     Q+  KL++   L      R+   HL+     +  +     +D    + +    
Sbjct  210  IGGANRRQEAEKLAKGVNLLIATPGRLLD-HLQNTQGFVFKNLKALVIDEADRILEIGFE  268

Query  313  EHVTKT-QILCAERRLLALFDD----RKNELAHLA-THGPENPKL---------------  351
            E + +  +IL  E R   LF      +  +LA ++   GP    +               
Sbjct  269  EEMKQIIKILPKEERQSMLFSATQTTKVEDLARISLRPGPLYINVVPETAASTADGLEQG  328

Query  352  ------EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
                  +    +L       +  + I+F  +  S       L        +D+    L G
Sbjct  329  YVVCDSDKRFLLLFSFLKKYSKKKIIVFLSSCNSVKYFGELL------NYIDLPVLDLHG  382

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM  465
                       Q+ +     +F +     LV T VA  GLDIP  + ++++    +    
Sbjct  383  --------KQKQQKRTNTFFEFCNAKQGTLVCTDVAARGLDIPAVDWIIQFDPPDDPRDY  434

Query  466  VQARGRARAD--QSVYAFVA  483
            +   GR          + + 
Sbjct  435  IHRVGRTARGSNGKGKSLMF  454


 Score = 53.3 bits (126),  Expect = 6e-06, Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 52/135 (39%), Gaps = 9/135 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA----AAYVAKRH-LETVDGAKVVVLVNRVHLVT  61
            Q + I P L GK+++    TG+GKT A    A  +      +  +G  V+V+     L  
Sbjct  130  QAKTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIELLYSLKFKPRNGTGVIVVSPTRELAL  189

Query  62   QHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
            Q     R ++         + G    R     LA+  +LLI T   L   L + +     
Sbjct  190  QIFGVARELMAHHTQTFGIVIGGANRRQEAEKLAKGVNLLIATPGRLLDHLQNTQGFVFK  249

Query  121  ELTVFSLIVVDECHH  135
             L     +V+DE   
Sbjct  250  NLKA---LVIDEADR  261


>sp|A2QS00|DBP4_ASPNC ATP-dependent RNA helicase dbp4 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=dbp4 PE=3 SV=1
Length=802

 Score = 81.0 bits (198),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 37/197 (19%), Positives = 69/197 (35%), Gaps = 23/197 (12%)

Query  332  DDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQ  391
                ++L       P   KL++L   ++         + I+F  + +    +    +  Q
Sbjct  260  SATPSKLQQHYVVTPLPQKLDVLWSFIRSNLK----SKTIVFLSSGKQVRFVYESFRHMQ  315

Query  392  GLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN  451
                         G           Q  + ++  KF      +L AT VA  GLD P  +
Sbjct  316  P------------GVPLMHLHGRQKQGGRLDITTKFSSAQHAVLFATDVAARGLDFPAVD  363

Query  452  VVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAV  510
             V++     +  + +   GR AR ++   A +  + S E         L+ L ++ V   
Sbjct  364  WVIQLDCPEDADTYIHRVGRTARYERDGRAVLFLDPSEE------KGMLKRLEQKKVQVE  417

Query  511  QKMDQAEYQAKIRDLQQ  527
            +   +A  Q  I+D  Q
Sbjct  418  RINVKANKQQSIKDQLQ  434


 Score = 57.5 bits (137),  Expect = 4e-07, Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 48/135 (36%), Gaps = 10/135 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAY--VAKRHLETV----DGAKVVVLVNRVHLV  60
            Q   I  AL+G++I+    TG+GKT  A    + +          DG   +VL     L 
Sbjct  74   QSRAISHALKGRDILGAAKTGSGKTL-AFLIPILENLYRKQWSEHDGLGALVLSPTRELA  132

Query  61   TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
             Q  E  R++         L                 ++L+CT   +   L   ++    
Sbjct  133  IQIFEVLRKVGRYHTFSAGLVIGGKSLREEQERLGRMNILVCTPGRMLQHL---DQTSFF  189

Query  121  ELTVFSLIVVDECHH  135
            E     ++V+DE   
Sbjct  190  ETHNLQMLVLDEADR  204


>sp|Q8JHJ2|DDX55_DANRE ATP-dependent RNA helicase DDX55 OS=Danio 
rerio OX=7955 GN=ddx55 PE=2 SV=2
Length=593

 Score = 80.6 bits (197),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 28/157 (18%), Positives = 54/157 (34%), Gaps = 18/157 (11%)

Query  328  LALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWL  387
             +       +L++  T      K   L   L++        + ++F  T         + 
Sbjct  232  ASSVQKTPAKLSNYYTMCRAEEKFNTLVAFLRQH----KHEKQLVFFSTCACVE----YF  283

Query  388  QQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDI  447
             +   +   ++    + G           +  + ++   F+     +LV T V   G+DI
Sbjct  284  GKALEVLVKNVSIHCIHGKM---------KHKRNKIFADFRALKSGILVCTDVMARGIDI  334

Query  448  PHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVA  483
            P  N V++Y   ++  S V   GR AR      A V 
Sbjct  335  PEVNWVLQYDPPSSASSFVHRCGRTARIGNQGNALVF  371


 Score = 44.0 bits (102),  Expect = 0.004, Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 42/121 (35%), Gaps = 11/121 (9%)

Query  26   TGAGKTRA----AAYVAKRHLETVDGAKV--VVLVNRVHLVTQHGEEFRRML---DGRWT  76
            TG+GKT A    A  +  +  E +   +V  +++     L  Q  E   R L        
Sbjct  55   TGSGKTLAFVIPALEILLKREEKLKKMQVGALIITPTRELAMQISEVMGRFLQGFPQFTQ  114

Query  77   VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE--EEHVELTVFSLIVVDECH  134
            +  + G            +  +++I T   L+       +  +    +    ++V+DE  
Sbjct  115  ILLIGGSNPIEDVEKLKTQGANIIIATPGRLEDMFRRKADGLDLATAVKSLDVLVLDEAD  174

Query  135  H  135
             
Sbjct  175  R  175


>sp|Q1E9T9|DBP7_COCIM ATP-dependent RNA helicase DBP7 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=DBP7 PE=3 SV=1
Length=769

 Score = 81.0 bits (198),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 30/158 (19%), Positives = 56/158 (35%), Gaps = 26/158 (16%)

Query  351  LEMLEKILQRQFSSSNS-PRGIIFTR-------------TRQSAHSLLLWLQQQQGLQTV  396
            L  L  +L+R F+   S  + IIF                R+S+  L     +     + 
Sbjct  428  LVTLTALLKRTFARKGSVMKAIIFVSCADSVDFHFEVFTRRESSEELPDADDENAP-SSS  486

Query  397  DIRAQLLIGAGNS---------SQSTHMTQRDQQEVIQKF-QDGTLNLLVATSVAEEGLD  446
            ++   +   +  S              + Q  +   +  F +    ++L+ T VA  GLD
Sbjct  487  NVHGSIATASAFSNPSNNVILHKLHGSLPQHVRTATLSAFAKQKDASVLICTDVAARGLD  546

Query  447  IPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVA  483
            +P+ + V+ Y         +   GR AR  +   A + 
Sbjct  547  LPNVDFVIEYDPAFCSDDHLHRIGRTARLGRDGRALIF  584


 Score = 44.0 bits (102),  Expect = 0.005, Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 43/131 (33%), Gaps = 23/131 (18%)

Query  22   IWLPTGAGKTRAAAY----VAKRHLETVDGAK--------------VVVLVNRVHLVTQH  63
            +   TG+GKT A          R      G K               +VL     L  Q 
Sbjct  199  VQAQTGSGKTLAYLLPIVERLMRISSHNKGKKDSEGNTVHRDSGLFAIVLAPTRELCKQI  258

Query  64   GEEFRRML--DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVE  121
                  +L         T+ G    ++    L +  ++L+ T   L   L + +    ++
Sbjct  259  SVVLDGLLRCAHWIVAGTVIGGEKKKSEKARLRKGLNILVATPGRLADHLENTK---VLD  315

Query  122  LTVFSLIVVDE  132
            ++    +V+DE
Sbjct  316  VSNVRWLVLDE  326


>sp|Q0IE10|UVRB_SYNS3 UvrABC system protein B OS=Synechococcus 
sp. (strain CC9311) OX=64471 GN=uvrB PE=3 SV=1
Length=679

 Score = 81.0 bits (198),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 36/192 (19%), Positives = 78/192 (41%), Gaps = 25/192 (13%)

Query  319  QILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQ  378
            ++  +E ++          L  L    P   +++ L   ++    +S   R ++ T T++
Sbjct  398  EMEVSEGQVAEQVIRPTGVLDPLVEVRPTTGQVDDLLGEIRD--RASKKQRVLVTTLTKR  455

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT  438
             A  L  +L + +      +R + L         + +   ++ E+IQ  + G  ++LV  
Sbjct  456  MAEDLTDYLAENK------VRVRYL--------HSEIHSIERIEIIQDLRLGEYDVLVGV  501

Query  439  SVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAFVATEGSRELKRE  493
            ++  EGLD+P  ++V          L  + S++Q  GRA       A +  E       +
Sbjct  502  NLLREGLDLPEVSLVAILDADKEGFLRAQRSLIQTIGRAARHVEGKALLYAE----TMTD  557

Query  494  LINEALETLMEQ  505
             + +A+E    +
Sbjct  558  SMAKAIEETERR  569


>sp|A3CNJ9|UVRB_STRSV UvrABC system protein B OS=Streptococcus 
sanguinis (strain SK36) OX=388919 GN=uvrB PE=3 SV=1
Length=662

 Score = 81.0 bits (198),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 79/199 (40%), Gaps = 23/199 (12%)

Query  365  SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI  424
              + R  I T T++ A  L  + ++              +G       + +   ++ E+I
Sbjct  448  EKNERTFITTLTKKMAEDLTDYFKE--------------MGVKVKYMHSDIKTLERTEII  493

Query  425  QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVY  479
            +  + G  ++LV  ++  EG+D+P  ++V          L NE  ++Q  GRA  +   +
Sbjct  494  RDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSEGH  553

Query  480  AFVATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDL---QQAALTKRAA  535
              +  +  ++ ++R +   A    ++ A      +     + +IRDL    +AAL  +  
Sbjct  554  VIMYADTMTQSMQRAIDETARRRAIQMAYNEEHGIVPQTIKKEIRDLISVTKAALPDKEE  613

Query  536  QAAQRENQRQQFPVEHVQL  554
                    +Q+      +L
Sbjct  614  TVEIESLNKQERKDMIKKL  632


>sp|Q5AF95|DBP4_CANAL ATP-dependent RNA helicase DBP4 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DBP4 
PE=3 SV=1
Length=765

 Score = 81.0 bits (198),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 33/178 (19%), Positives = 56/178 (31%), Gaps = 20/178 (11%)

Query  331  FDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQ  390
                   L       P + KL++L   ++         + ++F  + +         +  
Sbjct  261  VSATPESLEQYYVKVPLDEKLDVLWSFIKSHLK----SKILVFFSSSKQVQYTYETFRTL  316

Query  391  QGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHC  450
            Q             G           Q  + E   KF       L AT +   GLD P  
Sbjct  317  QP------------GISLMKLYGRHKQTSRLETTMKFSQAQHACLFATDIVARGLDFPAI  364

Query  451  NVVVRYGLLTNEISMVQARGR----ARADQSVYAFVATEGSRELKRELINEALETLME  504
            + VV+     +  + V   GR     R  +S+   + +E    LKR  I++    LM 
Sbjct  365  DWVVQVDCPEDAATYVHRVGRSARFGRKGKSLLMLLPSEEEGMLKRLKIHKIEPKLMN  422


 Score = 59.0 bits (141),  Expect = 1e-07, Method: Composition-based stats.
 Identities = 52/363 (14%), Positives = 108/363 (30%), Gaps = 35/363 (10%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAY------VAKRHLETVDGAKVVVLVNRVHLV  60
            Q + I  AL+G++++    TG+GKT  A        + +  +   DG   +++     L 
Sbjct  75   QKKTIPIALKGEDLMGTARTGSGKTL-AFLIPVIESLIRNKITEYDGLAALIVSPTRELA  133

Query  61   TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
             Q  E   ++         L                 ++L+ T   +   L        +
Sbjct  134  VQIFEVLTKIGKYNTFSAGLVTGGKDVQFEKERVSRMNILVGTPGRISQHLNEAVG---M  190

Query  121  ELTVFSLIVVDECHHT------------HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTA  168
            E +   ++V+DE                            +   + +    L + L LT 
Sbjct  191  ETSNLQVLVLDEADRCLDMGFKKQIDNILGHLPTTRQTLLFSATQSESVNDLAR-LSLTN  249

Query  169  SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP  228
                G +S  +     V     +L+ + +  P +    +     +   +  +    S   
Sbjct  250  PNKIGVSSDQE-----VSATPESLEQYYVKVPLDEKLDVLWSFIKSHLKSKILVFFSSSK  304

Query  229  FGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN  288
                  +    +   + + +L   +G     +Q  +L      +  Q   ++A  +    
Sbjct  305  QVQYTYETFRTLQPGISLMKL---YGRH---KQTSRLETTMKFSQAQHACLFATDIVARG  358

Query  289  DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPEN  348
                  D V  VD       + HR      +     + LL L    +  +          
Sbjct  359  LDFPAIDWVVQVDCPEDAATYVHRVG-RSARFGRKGKSLLMLLPSEEEGMLKRLKIHKIE  417

Query  349  PKL  351
            PKL
Sbjct  418  PKL  420


>sp|Q4KH47|RAPA_PSEF5 RNA polymerase-associated protein RapA OS=Pseudomonas 
fluorescens (strain ATCC BAA-477 / NRRL B-23932 
/ Pf-5) OX=220664 GN=rapA PE=3 SV=1
Length=949

 Score = 81.4 bits (199),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 80/455 (18%), Positives = 155/455 (34%), Gaps = 64/455 (14%)

Query  27   GAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGP  86
            G GKT  A  V  R L +   ++V++LV   +L  Q   E RR  +    V     +   
Sbjct  180  GLGKTIEAGLVIHRQLLSGRASRVLILVP-ENLQHQWLVEMRRRFNL--QVALFDEERFI  236

Query  87   RAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIM  146
             +   +      L +   E L       + ++ +    + L+VVDE HH      +   +
Sbjct  237  ESDASNPFEDTQLALVALEWLVDD---EKAQDALFAAGWDLMVVDEAHHLVW---HEDQV  290

Query  147  SQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQ  206
            S    L  Q A+ +P VL LTA+P      +  G  +H  +L   LD            +
Sbjct  291  SPEYALVEQLAETIPGVLLLTATP------EQLGQDSHFARL-RLLDPNRFHDLAAFRAE  343

Query  207  LQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLS  266
             + +                 P  + +++LMD+     E  +    F     E  +  ++
Sbjct  344  SENY----------------RPVAEAVQELMDKGRLSPEAHKTIHGFLGNEGEALLAAVN  387

Query  267  EAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERR  326
            +  + A     R+    L R+    ++    R     AA+Q F  R+ +    + C +  
Sbjct  388  DGDSEA---SARLVRELLDRHGTGRVLFRNTR-----AAVQGFPERK-LHAYPLPCPDEY  438

Query  327  LLALFDDRKNELAHLATHGPENP--------KLEMLEKILQRQFSSSNSPRGIIFTRTRQ  378
            L     +       ++     +         K +   + L  Q       + ++     +
Sbjct  439  LELPLGEHAELYPEVSFQAQPDVSDDEQRWWKFDPRVEWLIDQLKMLKRTKVLVICAHAE  498

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTL--NLLV  436
            +A  L   L+ + G+                     M   ++      F D      +L+
Sbjct  499  TAMDLEDALRVRSGIPATVFH-------------EGMNILERDRAAAYFADEEFGAQVLI  545

Query  437  ATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
             + +  EG +    + +V + L ++   + Q  GR
Sbjct  546  CSEIGSEGRNFQFAHHLVLFDLPSHPDLLEQRIGR  580


>sp|Q3IKF4|UVRB_PSET1 UvrABC system protein B OS=Pseudoalteromonas 
translucida (strain TAC 125) OX=326442 GN=uvrB PE=3 SV=1
Length=664

 Score = 81.0 bits (198),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 79/203 (39%), Gaps = 22/203 (11%)

Query  354  LEKILQRQFSS-SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQS  412
            ++ +L   + S     R ++ T T++ +  L  +L +       +++ + L         
Sbjct  432  VDDLLSEIYKSVEKGERVLVTTLTKRMSEDLTDYLSEH------NVKVRYL--------H  477

Query  413  THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQ  467
            + +   ++ E+I+  + G  ++LV  ++  EGLD+P   +V          L +  S++Q
Sbjct  478  SDIDTVERVEIIRDLRAGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSARSIIQ  537

Query  468  ARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQ  526
              GR AR  +          ++ + + +   A    ++ A      ++      KI D  
Sbjct  538  TVGRAARHLEGRAILYGDRITKSMAKAMDETARRREIQHAYNIEHGIEPHSLAKKILDSM  597

Query  527  QAALTKRAAQAAQRENQRQQFPV  549
                 +   +   R  +++   V
Sbjct  598  DVG-EEAGPKDNLRLIRKESKKV  619


>sp|Q2NL08|DDX55_BOVIN ATP-dependent RNA helicase DDX55 OS=Bos 
taurus OX=9913 GN=DDX55 PE=2 SV=1
Length=601

 Score = 80.6 bits (197),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 30/169 (18%), Positives = 54/169 (32%), Gaps = 20/169 (12%)

Query  332  DDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQ  391
                + L +       + K   L   L+         + ++F  T          L+   
Sbjct  236  QKTPSRLENHYMVCKADEKFNQLVHFLRNH----KQEKHLVFFSTCACVEYYGKALE---  288

Query  392  GLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN  451
                      L+ G         M  + + ++  +F+     +LV T V   G+DIP  N
Sbjct  289  ---------TLVKGVKIMCIHGKMKYK-RNKIFMEFRKLQSGILVCTDVMARGIDIPEVN  338

Query  452  VVVRYGLLTNEISMVQARGRA---RADQSVYAFVATEGSRELKRELINE  497
             V++Y   +N  + V   GR        S   F+       +    IN+
Sbjct  339  WVLQYDPPSNASAFVHRCGRTARIGHGGSALVFLLPMEESYISFLAINQ  387


 Score = 47.5 bits (111),  Expect = 4e-04, Method: Composition-based stats.
 Identities = 21/132 (16%), Positives = 45/132 (34%), Gaps = 11/132 (8%)

Query  15   LEGKNIIIWLPTGAGKTRAAAYVAKRHL----ETVDGAKV--VVLVNRVHLVTQHGEEFR  68
            ++ K++     TG+GKT A     +  L    E    ++V  +++     L  Q  E   
Sbjct  44   MKNKDVAAEAVTGSGKTLAFVIPIEEILLRREEKFKKSQVGAIIITPTRELAVQIEEVLS  103

Query  69   RMLD--GRWTVTTLSGDMGPRAGFGHLAR-CHDLLICTAELLQMALTSPEEEEHV--ELT  123
                   +++     G   P            ++++ T   L+       E   +   + 
Sbjct  104  HFTKPFPQFSQILWIGGRNPGEDVARFKELGGNIIVATPGRLEDMFRRKAEGLDLASCVR  163

Query  124  VFSLIVVDECHH  135
               ++V+DE   
Sbjct  164  SLEVLVLDEADR  175


>sp|A5DID7|HAS1_PICGU ATP-dependent RNA helicase HAS1 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=HAS1 PE=3 
SV=2
Length=569

 Score = 80.6 bits (197),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 36/247 (15%), Positives = 86/247 (35%), Gaps = 18/247 (7%)

Query  253  FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHR  312
             G     Q+  KL +   L      R+   HL+     +  +     +D    + +    
Sbjct  212  IGGANRRQEADKLMKGVNLLIATPGRLLD-HLQNTKGFIFKNLKALVIDEADRILEIGFE  270

Query  313  EHVTKT-QILCAERRLLALFDD----RKNELAHLATH-GPEN------PKLEMLEKILQR  360
            + + +  ++L ++ R   LF      +  +LA ++   GP         ++   + + Q 
Sbjct  271  DEMKQIIKVLPSDERQSMLFSATQTTKVEDLARISLRAGPLYINVVPETEVSTADGLEQG  330

Query  361  QFSSSNSPR-GIIFT-RTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQR  418
              +  +  R  ++F+   R     ++++L     ++         I            Q+
Sbjct  331  YVTCDSDMRFLLLFSFLRRNIKKKIIVFLSSCNCVKYFGELLN-YIDLPVLDLHGKQKQQ  389

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA--RADQ  476
             +     +F +    +L+ T VA  GLDIP  + ++++    +    +   GR       
Sbjct  390  KRTNTFFEFCNAKQGILICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTGG  449

Query  477  SVYAFVA  483
               + + 
Sbjct  450  KGKSLMF  456


 Score = 53.3 bits (126),  Expect = 5e-06, Method: Composition-based stats.
 Identities = 31/135 (23%), Positives = 51/135 (38%), Gaps = 9/135 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA----AAYVAKRH-LETVDGAKVVVLVNRVHLVT  61
            Q + I P L G++++    TG+GKT A    A  +      +  +G  V+V+     L  
Sbjct  132  QEKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEMLYSLKFKPRNGTGVIVVSPTRELAL  191

Query  62   QHGEEFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
            Q     R ++        +  G    R     L +  +LLI T   L   L + +     
Sbjct  192  QIFGVARDLMAHHSQTLGIVIGGANRRQEADKLMKGVNLLIATPGRLLDHLQNTKGFIFK  251

Query  121  ELTVFSLIVVDECHH  135
             L     +V+DE   
Sbjct  252  NLKA---LVIDEADR  263


>sp|Q2GMX1|HAS1_CHAGB ATP-dependent RNA helicase HAS1 OS=Chaetomium 
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 
6347 / NRRL 1970) OX=306901 GN=HAS1 PE=3 SV=1
Length=586

 Score = 80.6 bits (197),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 72/227 (32%), Gaps = 13/227 (6%)

Query  264  KLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCA  323
            KL +   L      R+   HLRR +       ++   +A   L+  +  E     +IL  
Sbjct  230  KLGKGVNLLIATPGRLLD-HLRRGSFVFKNLKSLIIDEADRILEVGFEDEMRHIVKILPK  288

Query  324  ERRLLALFDDRKN-----------ELAHLATHGPENPKLEMLEKILQRQFSSSNSPR-GI  371
            E R   LF   +                L  +  E  +   +E + Q         R  +
Sbjct  289  ENRQTMLFSATQTTKVEDLARISLRPGPLYINVDEEKQFSTVEGLDQGYVIVDADKRFLL  348

Query  372  IFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGT  431
            +F+  ++ A   ++                  I            Q+ +     +F +  
Sbjct  349  LFSFLKKMAKKKIIVFLSSCNSVKYYSELLQYIDLQVLDLHGKQKQQKRTNTFFEFCNAK  408

Query  432  LNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSV  478
               L+ T VA  GLDIP  + +V++    +    +   GR     + 
Sbjct  409  QGTLICTDVAARGLDIPQVDWIVQFDPPDDPRDYIHRVGRTARGNNT  455


 Score = 56.0 bits (133),  Expect = 1e-06, Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 42/127 (33%), Gaps = 10/127 (8%)

Query  15   LEGKNIIIWLPTGAGKT---RAAAYVAKRHLETVD--GAKVVVLVNRVHLVTQHGEEFRR  69
            L GK+++    TG+GKT      A      L      G  V+V+     L  Q     R 
Sbjct  147  LAGKDVLGAAKTGSGKTLAFLIPAIEMLNSLRFKPRNGTGVIVVTPTRELALQIFGVARE  206

Query  70   MLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLI  128
            ++         + G    RA    L +  +LLI T   L   L                +
Sbjct  207  LMKNHSQTYGVVIGGANIRAEEDKLGKGVNLLIATPGRLLDHL----RRGSFVFKNLKSL  262

Query  129  VVDECHH  135
            ++DE   
Sbjct  263  IIDEADR  269


>sp|A8AX17|UVRB_STRGC UvrABC system protein B OS=Streptococcus 
gordonii (strain Challis / ATCC 35105 / BCRC 15272 / CH1 / 
DL1 / V288) OX=467705 GN=uvrB PE=3 SV=1
Length=662

 Score = 80.6 bits (197),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 37/208 (18%), Positives = 82/208 (39%), Gaps = 22/208 (11%)

Query  365  SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI  424
              + R  I T T++ A  L  + ++              +G       + +   ++ E+I
Sbjct  448  EKNERTFITTLTKKMAEDLTDYFKE--------------MGVKVKYMHSDIKTLERTEII  493

Query  425  QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVY  479
            +  + G  ++LV  ++  EG+D+P  ++V          L NE  ++Q  GRA  +   +
Sbjct  494  RDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSEGH  553

Query  480  AFVATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTK--RAAQ  536
              +  +  ++ ++R +   A    ++ A      +     + +IRDL     T      +
Sbjct  554  VIMYADTMTQSMQRAIDETARRRAIQMAYNEEHGIVPQTIKKEIRDLISVTKTALPDKEE  613

Query  537  AAQRENQRQQFPVEHVQLLCINCMVAVG  564
              + E+  +Q   + ++ L      A G
Sbjct  614  TVEIESLNKQERKDMIKKLEGQMQEAAG  641


>sp|Q8TFL3|DBP7_CANGA ATP-dependent RNA helicase DBP7 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DBP7 PE=3 SV=1
Length=715

 Score = 80.6 bits (197),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 7/95 (7%)

Query  396  VDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF------QDGTLNLLVATSVAEEGLDIPH  449
              I+ + L G         ++Q+ +   ++ F        G   +L  T VA  GLD+P 
Sbjct  453  PSIKDEELPGIICYKLHGSLSQQMRTMTLKHFATDSEQTKGKHLILFCTDVASRGLDLPD  512

Query  450  CNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVA  483
             + V+ +         +   GR ARA +S  A + 
Sbjct  513  VSTVIEFDPPFAVEDHLHRIGRTARAGRSGEALLF  547


 Score = 42.9 bits (99),  Expect = 0.010, Method: Composition-based stats.
 Identities = 18/116 (16%), Positives = 41/116 (35%), Gaps = 9/116 (8%)

Query  26   TGAGKT-------RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTVT  78
            TG+GKT        +A      H++   G   +++     L +Q       + +    + 
Sbjct  175  TGSGKTLAYLLPIFSAILGMGDHIDRKSGCFALIIAPTRELASQIYHVTTMLANCCHYLV  234

Query  79   --TLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDE  132
               L G    ++    L +  + +I T   +     + +  +    +    +V+DE
Sbjct  235  PCLLIGGERKKSEKARLRKGCNFIIGTPGRILDHFQNTKVIKEQMQSSLRYVVLDE  290


>sp|Q6YQE1|UVRB_ONYPE UvrABC system protein B OS=Onion yellows 
phytoplasma (strain OY-M) OX=262768 GN=uvrB PE=3 SV=2
Length=670

 Score = 80.6 bits (197),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 62/416 (15%), Positives = 135/416 (32%), Gaps = 61/416 (15%)

Query  171  GTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHS-----------QQPCKQYN  219
                  +L   INH  +    L    I        ++ E                 K+  
Sbjct  262  IKRIRQELKEQINHFEKTNQLLAAQKIKMRTLHDLEMLEQIGNCNGVENYSRHLALKEKG  321

Query  220  LCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRV  279
                   D FG+    ++D+ H  + +P++   +      +  +         G +    
Sbjct  322  EAPSTLIDFFGNEFLTIIDESH--VTIPQIKGMYFGDFSRKTNL------VNFGFRLPSA  373

Query  280  YALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELA  339
                  ++++       +  V  L+A    Y        +I   E+ +   F      L 
Sbjct  374  LDNRPLKFHE---FQAKMNKVIYLSATPGNYELTK----KIPIVEQIIRPTF-----VLD  421

Query  340  HLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIR  399
                  P + +++ L   ++ Q  + N+ R +I T T   +  L  +L+       + I+
Sbjct  422  PEIEIRPTHNQMDDLYFEIKHQ--TKNNQRILITTLTINMSEDLTAYLKN------LCIK  473

Query  400  AQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG--  457
               L         + +    + E+++  + G  + LV  ++  EGLD+P   +V      
Sbjct  474  VAYL--------HSEIKSLQRLEILKDLRLGKYDCLVGVNLLREGLDLPEVALVAILDAD  525

Query  458  ---LLTNEISMVQARGRARADQSVYAFVATE---------GSRELKRELINEALETLMEQ  505
                L NE S++Q  GRA  + +  A +  +              +R  I +     M+ 
Sbjct  526  KQGFLRNERSLIQTIGRAARNITGKAIMYADCISPAMQIAIEETYRRRKIQQQYNETMKV  585

Query  506  AVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQLLCINCMV  561
               A+ K        K ++  Q        +  ++         ++ ++  +  M+
Sbjct  586  TPTALNKTILETISIKQKESAQNENENGKVKGQKKLQTHTNITAKNKEIKRLQKMM  641


>sp|Q6GIN3|UVRB_STAAR UvrABC system protein B OS=Staphylococcus 
aureus (strain MRSA252) OX=282458 GN=uvrB PE=3 SV=1
Length=663

 Score = 80.6 bits (197),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 87/224 (39%), Gaps = 31/224 (14%)

Query  345  GPENPKLEM------LEKILQR-QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD  397
            G  +PK+E+      ++ +L   Q     + R ++ T T++ +  L  ++++        
Sbjct  420  GLLDPKIEVRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEA-------  472

Query  398  IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG  457
                   G   +   + +   ++ E+I+  + GT +++V  ++  EG+DIP  ++VV   
Sbjct  473  -------GIKVNYLHSEIKTLERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILD  525

Query  458  -----LLTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEA---LETLMEQAVAA  509
                  L +  S++Q  GRA  +      +  +   +  +  I+E     E  M+     
Sbjct  526  ADKEGFLRSNRSLIQTIGRAARNDKGEVIMYADKMTDSMKYAIDETQRRREIQMKH--NE  583

Query  510  VQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQ  553
               +       KI DL  A +         +    ++   +  Q
Sbjct  584  KHGITPKTINKKIHDLISATVENDENNDKAQTVIPKKMTKKERQ  627


>sp|P67425|UVRB_STAAN UvrABC system protein B OS=Staphylococcus 
aureus (strain N315) OX=158879 GN=uvrB PE=1 SV=1
Length=663

 Score = 80.6 bits (197),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 87/224 (39%), Gaps = 31/224 (14%)

Query  345  GPENPKLEM------LEKILQR-QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD  397
            G  +PK+E+      ++ +L   Q     + R ++ T T++ +  L  ++++        
Sbjct  420  GLLDPKIEVRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEA-------  472

Query  398  IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG  457
                   G   +   + +   ++ E+I+  + GT +++V  ++  EG+DIP  ++VV   
Sbjct  473  -------GIKVNYLHSEIKTLERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILD  525

Query  458  -----LLTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEA---LETLMEQAVAA  509
                  L +  S++Q  GRA  +      +  +   +  +  I+E     E  M+     
Sbjct  526  ADKEGFLRSNRSLIQTIGRAARNDKGEVIMYADKMTDSMKYAIDETQRRREIQMKH--NE  583

Query  510  VQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQ  553
               +       KI DL  A +         +    ++   +  Q
Sbjct  584  KHGITPKTINKKIHDLISATVENDENNDKAQTVIPKKMTKKERQ  627


>sp|P67424|UVRB_STAAM UvrABC system protein B OS=Staphylococcus 
aureus (strain Mu50 / ATCC 700699) OX=158878 GN=uvrB PE=3 
SV=1
Length=663

 Score = 80.6 bits (197),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 87/224 (39%), Gaps = 31/224 (14%)

Query  345  GPENPKLEM------LEKILQR-QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD  397
            G  +PK+E+      ++ +L   Q     + R ++ T T++ +  L  ++++        
Sbjct  420  GLLDPKIEVRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEA-------  472

Query  398  IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG  457
                   G   +   + +   ++ E+I+  + GT +++V  ++  EG+DIP  ++VV   
Sbjct  473  -------GIKVNYLHSEIKTLERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILD  525

Query  458  -----LLTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEA---LETLMEQAVAA  509
                  L +  S++Q  GRA  +      +  +   +  +  I+E     E  M+     
Sbjct  526  ADKEGFLRSNRSLIQTIGRAARNDKGEVIMYADKMTDSMKYAIDETQRRREIQMKH--NE  583

Query  510  VQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQ  553
               +       KI DL  A +         +    ++   +  Q
Sbjct  584  KHGITPKTINKKIHDLISATVENDENNDKAQTVIPKKMTKKERQ  627


>sp|Q5HHR0|UVRB_STAAC UvrABC system protein B OS=Staphylococcus 
aureus (strain COL) OX=93062 GN=uvrB PE=3 SV=1
Length=663

 Score = 80.6 bits (197),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 87/224 (39%), Gaps = 31/224 (14%)

Query  345  GPENPKLEM------LEKILQR-QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD  397
            G  +PK+E+      ++ +L   Q     + R ++ T T++ +  L  ++++        
Sbjct  420  GLLDPKIEVRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEA-------  472

Query  398  IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG  457
                   G   +   + +   ++ E+I+  + GT +++V  ++  EG+DIP  ++VV   
Sbjct  473  -------GIKVNYLHSEIKTLERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILD  525

Query  458  -----LLTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEA---LETLMEQAVAA  509
                  L +  S++Q  GRA  +      +  +   +  +  I+E     E  M+     
Sbjct  526  ADKEGFLRSNRSLIQTIGRAARNDKGEVIMYADKMTDSMKYAIDETQRRREIQMKH--NE  583

Query  510  VQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQ  553
               +       KI DL  A +         +    ++   +  Q
Sbjct  584  KHGITPKTINKKIHDLISATVENDENNDKAQTVIPKKMTKKERQ  627


>sp|Q8NXM0|UVRB_STAAW UvrABC system protein B OS=Staphylococcus 
aureus (strain MW2) OX=196620 GN=uvrB PE=3 SV=1
Length=663

 Score = 80.6 bits (197),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 87/224 (39%), Gaps = 31/224 (14%)

Query  345  GPENPKLEM------LEKILQR-QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD  397
            G  +PK+E+      ++ +L   Q     + R ++ T T++ +  L  ++++        
Sbjct  420  GLLDPKIEVRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEA-------  472

Query  398  IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG  457
                   G   +   + +   ++ E+I+  + GT +++V  ++  EG+DIP  ++VV   
Sbjct  473  -------GIKVNYLHSEIKTLERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILD  525

Query  458  -----LLTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEA---LETLMEQAVAA  509
                  L +  S++Q  GRA  +      +  +   +  +  I+E     E  M+     
Sbjct  526  ADKEGFLRSNRSLIQTIGRAARNDKGEVIMYADKMTDSMKYAIDETQRRREIQMKH--NE  583

Query  510  VQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQ  553
               +       KI DL  A +         +    ++   +  Q
Sbjct  584  KHGITPKTINKKIHDLISATVENDENNDKAQTVIPKKMTKKERQ  627


>sp|Q6GB72|UVRB_STAAS UvrABC system protein B OS=Staphylococcus 
aureus (strain MSSA476) OX=282459 GN=uvrB PE=3 SV=1
Length=663

 Score = 80.6 bits (197),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 87/224 (39%), Gaps = 31/224 (14%)

Query  345  GPENPKLEM------LEKILQR-QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD  397
            G  +PK+E+      ++ +L   Q     + R ++ T T++ +  L  ++++        
Sbjct  420  GLLDPKIEVRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEA-------  472

Query  398  IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG  457
                   G   +   + +   ++ E+I+  + GT +++V  ++  EG+DIP  ++VV   
Sbjct  473  -------GIKVNYLHSEIKTLERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILD  525

Query  458  -----LLTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEA---LETLMEQAVAA  509
                  L +  S++Q  GRA  +      +  +   +  +  I+E     E  M+     
Sbjct  526  ADKEGFLRSNRSLIQTIGRAARNDKGEVIMYADKMTDSMKYAIDETQRRREIQMKH--NE  583

Query  510  VQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQ  553
               +       KI DL  A +         +    ++   +  Q
Sbjct  584  KHGITPKTINKKIHDLISATVENDENNDKAQTVIPKKMTKKERQ  627


>sp|Q7TV80|UVRB_PROMM UvrABC system protein B OS=Prochlorococcus 
marinus (strain MIT 9313) OX=74547 GN=uvrB PE=3 SV=1
Length=679

 Score = 80.6 bits (197),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 19/129 (15%)

Query  363  SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE  422
             +    R +I T T++ A  L  +L +       D+R + L         + +   ++ E
Sbjct  440  RAEKQERVLITTLTKRMAEDLTDYLAEN------DVRVRYL--------HSEIHSIERIE  485

Query  423  VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQS  477
            +IQ  + G  ++LV  ++  EGLD+P  ++VV         L  E S++Q  GRA     
Sbjct  486  IIQDLRLGEYDVLVGVNLLREGLDLPEVSLVVILDADKEGFLRAERSLIQTIGRAARHVD  545

Query  478  VYAFVATEG  486
              A +  + 
Sbjct  546  GMALLYADN  554


>sp|A8FQW4|RAPA_SHESH RNA polymerase-associated protein RapA OS=Shewanella 
sediminis (strain HAW-EB3) OX=425104 GN=rapA PE=3 
SV=1
Length=968

 Score = 81.0 bits (198),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 74/452 (16%), Positives = 146/452 (32%), Gaps = 40/452 (9%)

Query  27   GAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGP  86
            G GKT  A  +  + L T    +++V+V    L  Q   E  R  + +++V      +  
Sbjct  179  GLGKTIEAGLIIHQQLLTGRAERILVIVPD-TLRHQWLVEMLRRFNLKFSVFDEDRCIEA  237

Query  87   RAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHT--HKDTVYNV  144
             A   +      L+IC+       L   +  E      + L+VVDE HH    +D     
Sbjct  238  YADNDNPFYTEQLVICS----LELLRKKKRLEQALDADWDLMVVDEAHHLEWTEDAPSRA  293

Query  145  IMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCC  204
                   +    ++ +P VL LTA+P         G  +H  +L   LD       +   
Sbjct  294  -----YRVVEALSEVVPGVLLLTATP------DQLGHQSHFARL-RLLDPDRFYDYEAFL  341

Query  205  PQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVK  264
             +  E S +                 D +  L + + +    P ++    T + +    +
Sbjct  342  KE--ESSYKDVASAADALASGNKLPDDAINSLTELLSEKDITPSINVIQATDI-DPDQQQ  398

Query  265  LSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAE  324
             +    L  L ++      L R + A +     R  +A        +        ++   
Sbjct  399  DARDELLQELLDRHGTGRVLYRNSRASVKGFPTRIFNAYPQAMPSQYVTAARVGAMMNGH  458

Query  325  RRLLALFDDRKNELAHLATHGPENP---KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAH  381
                       +           +    K +     L      +   + +I     ++A 
Sbjct  459  LDTQGKVKQALSPEKIYQDFDSNSASWWKFDPRVDWLINFLKENRRKKVLIIASQAETAL  518

Query  382  SLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF--QDGTLNLLVATS  439
            SL   L+ ++G+QT                   M+  ++ +    F  + G    L+ + 
Sbjct  519  SLEEALRTREGIQTTVFH-------------EGMSIIERDKAGAYFAQETGGAQALICSE  565

Query  440  VAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
            +  EG +    + ++ + L  N   + Q  GR
Sbjct  566  IGSEGRNFQFASQLILFDLPLNPDLLEQRIGR  597


>sp|Q8N3C0|ASCC3_HUMAN Activating signal cointegrator 1 complex 
subunit 3 OS=Homo sapiens OX=9606 GN=ASCC3 PE=1 SV=3
Length=2202

 Score = 81.4 bits (199),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 42/176 (24%), Positives = 73/176 (41%), Gaps = 19/176 (11%)

Query  7    QWEVIMPALE-GKNIIIWLPTGAGKTRAAAYVAKRHLET--------VDGAKVVVLVNRV  57
            Q  V   A    +N++I  PTGAGKT  A       +           +  K+V +    
Sbjct  481  QSIVFETAYNTNENMLICAPTGAGKTNIAMLTVLHEIRQHFQQGVIKKNEFKIVYVAPMK  540

Query  58   HLVTQHGEEF-RRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE  116
             L  +  + F RR+      V  L+GDM              +L+ T E     + + + 
Sbjct  541  ALAAEMTDYFSRRLEPLGIIVKELTGDMQLS---KSEILRTQMLVTTPEKW--DVVTRKS  595

Query  117  EEHVELTVFS-LIVVDECH--HTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS  169
               V L+    L+++DE H  H  +  V   I+++ L   ++  Q + ++LGL+A+
Sbjct  596  VGDVALSQIVRLLILDEVHLLHEDRGPVLESIVARTLRQ-VESTQSMIRILGLSAT  650


 Score = 69.1 bits (167),  Expect = 1e-10, Method: Composition-based stats.
 Identities = 54/303 (18%), Positives = 99/303 (33%), Gaps = 15/303 (5%)

Query  19    NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEE--FRRMLDGRWT  76
             N+++  PTG+GKT AA     R       +K V +     LV +  ++   R        
Sbjct  1344  NVLLGAPTGSGKTVAAELAIFRVFNKYPTSKAVYIAPLKALVRERMDDWKVRIEEKLGKK  1403

Query  77    VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECH-H  135
             V  L+GD+ P           DL++ T E       S +   +V+    +++++DE H  
Sbjct  1404  VIELTGDVTPDM---KSIAKADLIVTTPEKWDGVSRSWQNRNYVQ--QVTILIIDEIHLL  1458

Query  136   THKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTW  195
               +      ++           +   +++GL  S     A  L   +N       N    
Sbjct  1459  GEERGPVLEVIVSRTNFISSHTEKPVRIVGL--STALANARDLADWLNIKQMGLFNFRPS  1516

Query  196   CIMSPQNCCPQLQE---HSQQPCKQYNLCHR--RSQDPFGDLLKKLMDQIHDHLEMPELS  250
                 P     Q      +  +         +  RS  P   +L  +  +    L   EL 
Sbjct  1517  VRPVPLEVHIQGFPGQHYCPRMASMNKPAFQAIRSHSPAKPVLIFVSSRRQTRLTALELI  1576

Query  251   RKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFY  310
                 T+   +Q + + E      +   R   L L       + H  +   D     + F 
Sbjct  1577  AFLATEEDPKQWLNMDEREMENIIATVRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFV  1636

Query  311   HRE  313
             + +
Sbjct  1637  NCK  1639


 Score = 44.8 bits (104),  Expect = 0.004, Method: Composition-based stats.
 Identities = 32/171 (19%), Positives = 64/171 (37%), Gaps = 38/171 (22%)

Query  363   SSSNSPRGIIFT----RTRQSAHSLLLWLQQQQGL----------------QTVDIRAQL  402
             S S +   +IF     +TR +A  L+ +L  ++                     D   +L
Sbjct  1551  SHSPAKPVLIFVSSRRQTRLTALELIAFLATEEDPKQWLNMDEREMENIIATVRDSNLKL  1610

Query  403   LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV--------  454
              +  G       + +RD++ V + F +  + +L+ATS    G++ P   V++        
Sbjct  1611  TLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGVNFPAHLVIIKGTEYYDG  1670

Query  455   ---RY-GLLTNEISMVQARGRARA----DQSVYAFVATEGSRELKRELINE  497
                RY         ++Q  GRA      DQ     +  +  ++  ++ + E
Sbjct  1671  KTRRYVDFPIT--DVLQMMGRAGRPQFDDQGKAVILVHDIKKDFYKKFLYE  1719


>sp|Q8R8M4|UVRB_CALS4 UvrABC system protein B OS=Caldanaerobacter 
subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 
11007 / NBRC 100824 / MB4) OX=273068 GN=uvrB PE=3 SV=1
Length=662

 Score = 80.6 bits (197),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 30/193 (16%), Positives = 72/193 (37%), Gaps = 21/193 (11%)

Query  365  SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI  424
            +   R ++ T T++ A  L  +L++              +G       + +   ++ E+I
Sbjct  442  AKGYRVLVTTLTKKMAEDLSDYLKE--------------MGIRVRYLHSDIETIERVEII  487

Query  425  QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVY  479
            +  + G  ++L+  ++  EGLDIP   +V          L +E S++Q  GRA  +    
Sbjct  488  RDLRLGKFDVLIGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGRAARNAEGR  547

Query  480  AFVATEGSRELKRELINEA--LETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQA  537
              +  +      R  I+E      +  +       + +   +     +Q   + ++  + 
Sbjct  548  VIMYADTITNSMRRAIDETNRRRKIQMEYNEKHGIVPKTVVKGVRDVIQATQVAEKEEKY  607

Query  538  AQRENQRQQFPVE  550
             +  N      ++
Sbjct  608  EKTANFYDPDVIK  620


>sp|Q84T03|RH27_ORYSJ DEAD-box ATP-dependent RNA helicase 27 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os03g0802700 PE=3 
SV=1
Length=590

 Score = 80.2 bits (196),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 40/122 (33%), Gaps = 14/122 (11%)

Query  357  ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT  416
            +L        + + ++F  +  S           + L  + I    + G           
Sbjct  338  VLYAFLKKKQNKKVMVFFSSCNSVK------FHAELLNFLQIECSDIHG--------KQK  383

Query  417  QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQ  476
            Q+ +      F      +L+ T+VA  GLDIP  + +V+Y         +   GR    +
Sbjct  384  QQKRTTTFFNFCKAEKGILLCTNVAARGLDIPDVDFIVQYDPPDEPKDYIHRVGRTARGE  443

Query  477  SV  478
              
Sbjct  444  KG  445


 Score = 61.7 bits (148),  Expect = 1e-08, Method: Composition-based stats.
 Identities = 31/135 (23%), Positives = 50/135 (37%), Gaps = 9/135 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTR---AAAYVAKRHLETVD--GAKVVVLVNRVHLVT  61
            Q   I   L GK+++    TG+GKT      A     H   +   G  VVV+     L  
Sbjct  123  QARSIPHLLNGKDVMGAAKTGSGKTLAFLIPAIEMLHHAHFMPRNGTGVVVVCPTRELAI  182

Query  62   QHGEEFRRMLDGRWTVTT-LSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
            Q     + ++         + G  G R     LA+  +LL+ T   L   L + +   + 
Sbjct  183  QTHNVAKELMKYHSQTLGYIIGGNGRRGEADQLAKGVNLLVATPGRLLDHLQNTKGFIYR  242

Query  121  ELTVFSLIVVDECHH  135
             L     +++DE   
Sbjct  243  RLK---CLIIDEADR  254


>sp|A6M2Z0|UVRB_CLOB8 UvrABC system protein B OS=Clostridium beijerinckii 
(strain ATCC 51743 / NCIMB 8052) OX=290402 GN=uvrB 
PE=3 SV=1
Length=657

 Score = 80.6 bits (197),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 31/175 (18%), Positives = 69/175 (39%), Gaps = 20/175 (11%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            R +I T T++ +  L  +L +              +G   +   + +   ++ ++I+  +
Sbjct  446  RILITTLTKRMSEDLTKYLIE--------------LGVKTTYMHSDIDTIERMKIIRDLR  491

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGR-ARADQSVYAFV  482
             G  ++LV  ++  EGLDIP   +V          L +E S++Q  GR AR  +S     
Sbjct  492  LGEYDVLVGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGRAARNSESKVIMY  551

Query  483  ATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQA  537
            A   ++ + + +        +++       +        +RD+ +A       + 
Sbjct  552  ADNITKSMDKAMKETERRRAIQKDYNERHGIVPTTIIKDVRDIIEATKVAEEVEE  606


 Score = 34.0 bits (76),  Expect = 5.7, Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 19/48 (40%), Gaps = 5/48 (10%)

Query  26  TGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDG  73
           TG+GKT   A V ++          ++L +   L  Q   EF+     
Sbjct  40  TGSGKTFTMANVIEKLQRPT-----IILAHNKTLAAQLCSEFKEFFPD  82


>sp|Q928A4|UVRB_LISIN UvrABC system protein B OS=Listeria innocua 
serovar 6a (strain ATCC BAA-680 / CLIP 11262) OX=272626 
GN=uvrB PE=3 SV=1
Length=658

 Score = 80.6 bits (197),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 37/262 (14%), Positives = 90/262 (34%), Gaps = 25/262 (10%)

Query  289  DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPEN  348
             + L +  +R  +    +              L     ++         L  +    P  
Sbjct  369  PSALDNRPLRLEEFEKHINQIMFISATPGPYELEKNPDVIEQIIRPTGLLDPIVEIRPIQ  428

Query  349  PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN  408
             +++ L   +        + R +I T T++ +  L  +L++               G   
Sbjct  429  GQIDDLMDEIND--RVEKNERVLITTLTKKMSEDLTNYLKEA--------------GVKV  472

Query  409  SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEI  463
                + +   ++ E+I+  + G  +++V  ++  EG+D+P  ++V          L +E 
Sbjct  473  QYLHSEVKTLERIEIIRDLRLGVYDVIVGINLLREGIDLPEVSLVAILDADKEGFLRSER  532

Query  464  SMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIR  523
            S++Q  GRA  +++    +  +   ++   + N   ET   + +              IR
Sbjct  533  SLIQTMGRAARNENGRVIMYAD---KMTDSMRNSISETERRRKIQIEYNEKHGITPKTIR  589

Query  524  -DLQQAALTKRAAQAAQRENQR  544
             +++       AA   +   Q 
Sbjct  590  KEIRGIIAATSAADEREAIKQH  611


>sp|B6EPV7|RAPA_ALISL RNA polymerase-associated protein RapA OS=Aliivibrio 
salmonicida (strain LFI1238) OX=316275 GN=rapA 
PE=3 SV=1
Length=969

 Score = 81.0 bits (198),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 81/462 (18%), Positives = 159/462 (34%), Gaps = 60/462 (13%)

Query  27   GAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGP  86
            G GKT  A  +  + + +    +V+++V    L  Q   E  R  +  +++         
Sbjct  180  GLGKTIEAGMIIHQQVLSGRAERVLIVVP-ETLQHQWLVEMMRRFNLHFSIF-------D  231

Query  87   RAGFGHLARCHDLLICTAELLQMAL----TSPEEEEHVELTVFSLIVVDECHH-----TH  137
                       +    TA+L+  +L     S    E V    + L+VVDE HH     T 
Sbjct  232  EERCIESYADSENPFDTAQLVLCSLDFIRRSKRRFEQVVEADWDLLVVDEAHHLEWNQTK  291

Query  138  KDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCI  197
                Y VI           A+    VL LTA+P      +  G  +H  +L   LD    
Sbjct  292  PSRAYQVI--------EAIAEETAGVLLLTATP------EQLGHESHFARL-RLLDPDRF  336

Query  198  MSPQNCCPQLQEHSQQPCKQYNLC---HRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFG  254
                    + +++  QP            +  +   + + +L+ +  D   +  +    G
Sbjct  337  YDYDAFVEEERQY--QPVADAVTALMSGDKLSNDAKNRIAELLSE-QDVEPLFRIIESDG  393

Query  255  TQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREH  314
            ++  + QV +      +      RV   + R         +      AL        R  
Sbjct  394  SEEQQSQVRQELVDNLMDRHGTGRVLFRNTRAAIKGFPQRNLNLMPMALPPQYATSMRVA  453

Query  315  VTKTQILCAERRLLALF---DDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGI  371
                  +  E R + +    +  +      AT    +P++  L ++L+     + + + +
Sbjct  454  TMMGGRMSNEARAMKMLYPEEIFQEFEGDSATWWQFDPRVNWLLELLKE----NRNEKVL  509

Query  372  IFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF--QD  429
            I      +A  L   L++++G     IR  +            M+  ++ +    F  ++
Sbjct  510  IIASRASTALQLEQALREREG-----IRGTVF--------HEGMSIIERDKAAAYFAQEE  556

Query  430  GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
            G   +L+ + +  EG +    N +V + L  N   + Q  GR
Sbjct  557  GGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGR  598


>sp|Q7S873|DBP7_NEUCR ATP-dependent RNA helicase dbp-7 OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / 
DSM 1257 / FGSC 987) OX=367110 GN=dbp-7 PE=3 SV=1
Length=814

 Score = 80.6 bits (197),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 36/205 (18%), Positives = 63/205 (31%), Gaps = 27/205 (13%)

Query  306  LQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSS  365
            L+D  H           AE   +        +L   A   P   +L  L  +L+  F+  
Sbjct  378  LEDAVHITASKSDMEKDAETGAVETAFSAPAQLKQAAIVTPAKLRLVTLIALLKSTFARK  437

Query  366  NS-PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRA-------------------QLLIG  405
             S  + IIF     S       L+        + +                      +  
Sbjct  438  GSVMKAIIFISCADSVDYHFELLKSTTPRAEPEPKPEGEAPTKPNIHIESTVAPATYITS  497

Query  406  AGNS-----SQSTHMTQRDQQEVIQKFQDGTLN-LLVATSVAEEGLDIPHCNVVVRYGLL  459
              N           + Q  +   ++ F +     +L+ T ++  GLD+P   +V+ Y   
Sbjct  498  PANPTVMLHKLHGSLAQPVRSATLKAFSECKDPAVLITTDISSRGLDVPAVELVIEYDPA  557

Query  460  TNEISMVQARGR-ARADQSVYAFVA  483
                  V   GR ARA ++  A + 
Sbjct  558  FAVPDHVHRIGRTARAGRAGKAVLF  582


 Score = 50.2 bits (118),  Expect = 5e-05, Method: Composition-based stats.
 Identities = 29/154 (19%), Positives = 49/154 (32%), Gaps = 32/154 (21%)

Query  8    WEVIMPALEGKNIIIWL-----------PTGAGKTRAAAY----VAKRHLETVDGA----  48
             E+  P    KN I  L            TG+GKT A                DG     
Sbjct  164  LEMKAPTAIQKNTIPQLVKEDSDAFLQAETGSGKTLAYLLPIVHRILALSHNEDGTPKTT  223

Query  49   --------KVVVLVNRVHLVTQHGEEFRRML--DGRWTVTTLSGDMGPRAGFGHLARCHD  98
                      ++L     L  Q      ++L        TT+ G    ++    + +  +
Sbjct  224  KVHRNSGLFAIILAPTRELCKQIAVVLEKVLRCAPWLVCTTVIGGESKKSEKARIRKGVN  283

Query  99   LLICTAELLQMALTSPEEEEHVELTVFSLIVVDE  132
            +LI T   L   L + +    +++     +V+DE
Sbjct  284  ILIATPGRLTDHLDNTK---VLDVGTVRWLVLDE  314


>sp|A1DNF9|DBP4_NEOFI ATP-dependent RNA helicase dbp4 OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / 
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dbp4 
PE=3 SV=1
Length=810

 Score = 80.6 bits (197),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 43/254 (17%), Positives = 85/254 (33%), Gaps = 21/254 (8%)

Query  275  QEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDR  334
            +  R+  L  ++  DA++ H   +    L        +        L     +       
Sbjct  201  EADRILDLGFQQTVDAIIGH-LPKERQTLLFSATQTKKVSDLARLSLQDPEYVAVHETAS  259

Query  335  KNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQ  394
                + L  H    P  + L  IL     S+   + ++F  + +    +    +  Q   
Sbjct  260  SATPSKLQQHYVITPLPQKL-DILWSFIRSNLKSKTMVFLSSGKQVRFVYESFRHLQP--  316

Query  395  TVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV  454
                      G           Q  + +++ +F      +L +T VA  GLD P  + V+
Sbjct  317  ----------GIPLMHLHGRQKQGGRLDIVTRFSQSKHCVLFSTDVAARGLDFPAVDWVI  366

Query  455  RYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM  513
            +     +  + +   GR AR ++   A +  + S E         L+ L ++ V   +  
Sbjct  367  QLDCPEDADTYIHRVGRTARYEREGRAVLFLDPSEE------EGMLKRLEQKKVPIEKIN  420

Query  514  DQAEYQAKIRDLQQ  527
             +A  Q  I+D  Q
Sbjct  421  IKANKQQSIKDQLQ  434


 Score = 54.4 bits (129),  Expect = 3e-06, Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 48/135 (36%), Gaps = 10/135 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAY--VAKRHLETV----DGAKVVVLVNRVHLV  60
            Q   I  AL+G++++    TG+GKT  A    V +          DG   ++L     L 
Sbjct  74   QSRAISHALKGRDVLGAAKTGSGKTL-AFLVPVLENLYRKQWAEHDGLGALILSPTRELA  132

Query  61   TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
             Q  E  R++         L                 ++L+CT   +   L   ++    
Sbjct  133  IQIFEVLRKIGRYHTFSAGLVIGGKSLKEEQERLGRMNILVCTPGRMLQHL---DQTALF  189

Query  121  ELTVFSLIVVDECHH  135
            +     ++V+DE   
Sbjct  190  DTYNLQMLVLDEADR  204


>sp|Q326H6|RAPA_SHIBS RNA polymerase-associated protein RapA OS=Shigella 
boydii serotype 4 (strain Sb227) OX=300268 GN=rapA 
PE=3 SV=1
Length=968

 Score = 81.0 bits (198),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 80/476 (17%), Positives = 152/476 (32%), Gaps = 44/476 (9%)

Query  5    SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ  62
             +Q  +           +++    G GKT  A  +  + L +    +V+++V    L  Q
Sbjct  156  PHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVP-ETLQHQ  214

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
               E  R  + R+ +         +    +      L+IC+   L  A  S +  EH+  
Sbjct  215  WLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICS---LDFARRSKQRLEHLCE  271

Query  123  TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG  180
              + L+VVDE HH    +D           +   Q A+ +P VL LTA+P      +  G
Sbjct  272  AEWDLLVVDEAHHLVWSEDAPSRE-----YQAIEQLAEHMPGVLLLTATP------EQLG  320

Query  181  AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI  240
              +H  +L   LD            +  + + +P                D L  L + I
Sbjct  321  MESHFARL-RLLDPNRFHDFAQFVEE--QKNYRPVADAVAMLLAGNKLSNDELNMLGEMI  377

Query  241  HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV  300
             +    P L          Q   +   +  +      RV   + R         +     
Sbjct  378  GEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIK  437

Query  301  DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG---PENPKLEMLEKI  357
              L        +          AE R   +    +        +      +P++E L   
Sbjct  438  LPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGY  497

Query  358  LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ  417
            L        S + ++      +A  L   L++++G++                    M+ 
Sbjct  498  LTSH----RSQKVLVICAKAATALQLEQVLREREGIRAAVFH-------------EGMSI  540

Query  418  RDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
             ++      F  +D    +L+ + +  EG +    + +V + L  N   + Q  GR
Sbjct  541  IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR  596


>sp|Q5HQX0|UVRB_STAEQ UvrABC system protein B OS=Staphylococcus 
epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / 
CCUG 31568 / BM 3577 / RP62A) OX=176279 GN=uvrB PE=3 SV=1
Length=661

 Score = 80.6 bits (197),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 34/215 (16%), Positives = 80/215 (37%), Gaps = 27/215 (13%)

Query  349  PKLEMLEKILQR-QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG  407
            P    ++ +L   Q       R ++ T T++ +  L  ++++               G  
Sbjct  428  PTENQIDDLLSEIQDRVDKDERVLVTTLTKKMSEDLTTYMKEA--------------GIK  473

Query  408  NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNE  462
             +   + +   ++ E+I+  + GT + +V  ++  EG+DIP  ++VV         L ++
Sbjct  474  VNYLHSEIKTLERIEIIRDLRMGTYDAIVGINLLREGIDIPEVSLVVILDADKEGFLRSD  533

Query  463  ISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQA----EY  518
             S++Q  GRA  +      +  +   ++   +     ET   + +      +        
Sbjct  534  RSLIQTIGRAARNDKGEVIMYAD---KITDSMQYAIDETQRRREIQIAHNKEHGITPKTI  590

Query  519  QAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQ  553
              KI D+  A +        Q+    ++   +  Q
Sbjct  591  NKKIHDVISATVESDETNQQQQTELPKKMTKKERQ  625


>sp|B8CIB4|RAPA_SHEPW RNA polymerase-associated protein RapA OS=Shewanella 
piezotolerans (strain WP3 / JCM 13877) OX=225849 
GN=rapA PE=3 SV=1
Length=968

 Score = 81.0 bits (198),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 79/459 (17%), Positives = 152/459 (33%), Gaps = 54/459 (12%)

Query  27   GAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGP  86
            G GKT  A  +  + L T    +++V+V    L  Q   E  R  + R++V      +  
Sbjct  179  GLGKTIEAGLIIHQQLLTGRAERILVIVPD-TLRHQWLVEMLRRFNLRFSVFDEDRCVEA  237

Query  87   RAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHT--HKDTVYNV  144
             A   +      L+IC+       L   +  E      + L+VVDE HH    +D     
Sbjct  238  YADNDNPFYTEQLVICS----LELLRKKKRLEQALDADWDLMVVDEAHHLEWSEDAPSRA  293

Query  145  IMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCC  204
                  ++    ++ +P VL LTA+P         G  +H  +L   LD        +  
Sbjct  294  -----YKVVEALSEVVPGVLLLTATP------DQLGHQSHFARL-RLLDPDRFYDYPSFL  341

Query  205  PQLQEHSQQPCK-QYNLCHRRSQDPFGDLLKKLM--DQIHDHLEMPELSRKFGT---QMY  258
             + + +           C           L +L+    I D + + + +        Q  
Sbjct  342  KEEESYKDVATAADALACGESLSSEAIASLTQLLSEKDISDSINLIQDASANADKRNQAR  401

Query  259  EQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHD----TVRAVDALAALQDFYHREH  314
            E+ + +L +      +  +   A         L IH           +  +     H + 
Sbjct  402  EELLQELLDRHGTGRVLYRNSRASVKGFPTRNLHIHPQPMPEQYVTASRVSAMMNKHLDT  461

Query  315  VTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFT  374
              K + + +  ++   FD                 K +     L     ++ S + +I  
Sbjct  462  NAKVRQVLSPEKIYQDFDSGSASWW----------KFDPRVDWLIDFLKTNRSKKVLIIA  511

Query  375  RTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF--QDGTL  432
               ++A SL   L+ ++G+Q                    M+  ++ +    F  + G  
Sbjct  512  SQAETALSLEEALRTREGIQATVFH-------------EGMSIIERDKAGAYFAQETGGA  558

Query  433  NLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
              L+ + +  EG +    + +V + L  N   + Q  GR
Sbjct  559  QALICSEIGSEGRNFQFASHLVLFDLPLNPDLLEQRIGR  597


>sp|Q8NHQ9|DDX55_HUMAN ATP-dependent RNA helicase DDX55 OS=Homo 
sapiens OX=9606 GN=DDX55 PE=1 SV=3
Length=600

 Score = 80.2 bits (196),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 30/169 (18%), Positives = 54/169 (32%), Gaps = 20/169 (12%)

Query  332  DDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQ  391
                + L +       + K   L   L+         + ++F  T          L+   
Sbjct  236  QKTPSRLENYYMVCKADEKFNQLVHFLRNH----KQEKHLVFFSTCACVEYYGKALEV--  289

Query  392  GLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN  451
                      L+ G         M  + + ++  +F+     +LV T V   G+DIP  N
Sbjct  290  ----------LVKGVKIMCIHGKMKYK-RNKIFMEFRKLQSGILVCTDVMARGIDIPEVN  338

Query  452  VVVRYGLLTNEISMVQARGRA---RADQSVYAFVATEGSRELKRELINE  497
             V++Y   +N  + V   GR        S   F+       +    IN+
Sbjct  339  WVLQYDPPSNASAFVHRCGRTARIGHGGSALVFLLPMEESYINFLAINQ  387


 Score = 47.1 bits (110),  Expect = 5e-04, Method: Composition-based stats.
 Identities = 20/121 (17%), Positives = 40/121 (33%), Gaps = 11/121 (9%)

Query  26   TGAGKTRAAAYVAKRHL----ETVDGAKV--VVLVNRVHLVTQHGEEFRRMLD--GRWTV  77
            TG+GKT A        L    E +  ++V  +++     L  Q  E           ++ 
Sbjct  55   TGSGKTLAFVIPILEILLRREEKLKKSQVGAIIITPTRELAIQIDEVLSHFTKHFPEFSQ  114

Query  78   TTLSGDMGPRAGFGHLARC-HDLLICTAELLQMALTSPEEEEHV--ELTVFSLIVVDECH  134
                G   P        +   ++++ T   L+       E   +   +    ++V+DE  
Sbjct  115  ILWIGGRNPGEDVERFKQQGGNIIVATPGRLEDMFRRKAEGLDLASCVRSLDVLVLDEAD  174

Query  135  H  135
             
Sbjct  175  R  175


>sp|Q6F9D2|UVRB_ACIAD UvrABC system protein B OS=Acinetobacter 
baylyi (strain ATCC 33305 / BD413 / ADP1) OX=62977 GN=uvrB 
PE=3 SV=1
Length=675

 Score = 80.6 bits (197),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 32/163 (20%), Positives = 68/163 (42%), Gaps = 20/163 (12%)

Query  349  PKLEMLEKILQRQ-FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG  407
            P L  ++ +L           R +I T T++ A  L  +L++               G  
Sbjct  430  PVLTQVDDVLSEINIRKEMDERVLITTLTKRMAEDLTSYLKEY--------------GVK  475

Query  408  NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNE  462
             +   + +   ++ ++I + + G  ++LV  ++  EGLD+P  ++V          L +E
Sbjct  476  VAYLHSDIDTVERVKIIHELRTGVYDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSE  535

Query  463  ISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQ  505
             S++Q  GRA  +    A +  +   +  ++ I+E      +Q
Sbjct  536  RSLIQTIGRAARNIKGKAILYADRMTDSMQKAIDETERRREKQ  578


>sp|P53734|DBP6_YEAST ATP-dependent RNA helicase DBP6 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DBP6 
PE=1 SV=1
Length=629

 Score = 80.2 bits (196),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 48/288 (17%), Positives = 103/288 (36%), Gaps = 27/288 (9%)

Query  275  QEQRVYALHLRRYNDALLIHDTVRAVDALAA--LQDFYHREHVTKTQILC-----AERRL  327
            +  R+     + +   L+ H     +D L    ++  +     T T+ L        +  
Sbjct  342  EADRLLNQSFQGWCPKLMSHLKTDKLDTLPGNVIKMIFSATLTTNTEKLNGLNLYKPKLF  401

Query  328  LALFDDRKNELAHLATHGPENP-------KLEMLEKILQRQFSSSNSPRGIIFTRTRQSA  380
            L   D        L       P        L +L  I Q    S  + + +IF ++ +S+
Sbjct  402  LKQTDKLYQLPNKLNEFNINIPTAKSVYKPLILLYSICQFMAHSPIAAKILIFVKSNESS  461

Query  381  HSLLLWLQQQQGLQTVD--IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGT----LNL  434
              L   LQ     ++    ++    +    +S +++ ++ + ++++  F   +    + +
Sbjct  462  IRLSKLLQLICESRSQSSVLKNLQNLAVSINSVNSNNSKAENKKIVANFSHHSESAGITI  521

Query  435  LVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARAD--QSVYAFVATEGSR---  488
            L+ T +   G+DI     V+ Y    +    V   GR ARA+   S Y  +   G R   
Sbjct  522  LITTDIMSRGIDINDITQVINYDPPMSSQQYVHRVGRTARANELGSAYNLLVGRGERTFF  581

Query  489  -ELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAA  535
             +L ++L  +       +    + + D   Y + +  L+        A
Sbjct  582  DDLNKDLDRDGKSVQPLELDFTLLESDSELYTSSLESLKNYHNNTAQA  629


 Score = 52.5 bits (124),  Expect = 9e-06, Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 46/121 (38%), Gaps = 10/121 (8%)

Query  20   IIIWLPTGAGKTRAAAYVAKRHL--ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV  77
            I++   TG+GKT A +    + L    ++  + +++V    L+ Q      ++  G   +
Sbjct  230  ILVNAATGSGKTLAYSIPIVQTLFKRQINRLRCIIIVPTKLLINQVYTTLTKLTQGTSLI  289

Query  78   TTLSGDMGPRAGFGHLARCH---DLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECH  134
             ++   +       H    +   D+LI T   L   L        + L     +++DE  
Sbjct  290  VSI-AKLENSLKDEHKKLSNLEPDILITTPGRLVDHLNMKS----INLKNLKFLIIDEAD  344

Query  135  H  135
             
Sbjct  345  R  345


>sp|A2C5S6|UVRB_PROM3 UvrABC system protein B OS=Prochlorococcus 
marinus (strain MIT 9303) OX=59922 GN=uvrB PE=3 SV=1
Length=679

 Score = 80.2 bits (196),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 19/129 (15%)

Query  363  SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE  422
             +    R +I T T++ A  L  +L +       D+R + L         + +   ++ E
Sbjct  440  RAKKQERVLITTLTKRMAEDLTDYLAEN------DVRVRYL--------HSEIHSIERIE  485

Query  423  VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQS  477
            +IQ  + G  ++LV  ++  EGLD+P  ++VV         L  E S++Q  GRA     
Sbjct  486  IIQDLRLGEYDVLVGVNLLREGLDLPEVSLVVILDADKEGFLRAERSLIQTIGRAARHVD  545

Query  478  VYAFVATEG  486
              A +  + 
Sbjct  546  GMALLYADN  554


>sp|Q61R02|DDX55_CAEBR Probable ATP-dependent RNA helicase DDX55 
homolog OS=Caenorhabditis briggsae OX=6238 GN=CBG06798 PE=3 
SV=1
Length=577

 Score = 80.2 bits (196),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 57/390 (15%), Positives = 132/390 (34%), Gaps = 30/390 (8%)

Query  197  IMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQ  256
            I + +    ++      P ++          PF + +K  ++ +    ++ +  + F  +
Sbjct  71   IQNARLQPNEIGALILSPSRELCSQIVNVIKPFAEKMKLNVETVTGGQKVDKNIKMFKNK  130

Query  257  MYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVT  316
              +  ++  +       +Q ++       +    L+I +  R         +    +H+ 
Sbjct  131  --DINILVATPGRLFQIIQHEKTMIARAMKGVQLLVIDEADR-------FNEIQFEDHMR  181

Query  317  KTQILCAERRLLALFDD-RKNELAHLATHGPENPKLEMLEKI--------LQRQF----S  363
            +      ++R   LF   +  E   L   G  N K   + +         L+  F    +
Sbjct  182  EILSCIPKQRRTGLFSATQVKEEDDLMVFGLRNAKQVKVSQERNSAAPSTLKNYFVECPA  241

Query  364  SSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEV  423
               +   + F R R     L+ +           I  + L      +     +   +   
Sbjct  242  DEKTSVCLEFIRQRTDKKVLIFFPSCNSVRYFHKIFERCLTKRPLFAVHGKCSNPHRAAQ  301

Query  424  IQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFV  482
            I+ F + T  ++++T V   G+DI   + V++Y L  +    V   GR AR  +   A +
Sbjct  302  IKAFSESTNGVMISTDVMARGIDITDIDWVIQYDLPKHSSWFVHRAGRTARCGRDGNALI  361

Query  483  ATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQREN  542
                 +      ++   +  +E+         +AE      +L+Q  +  + +  A  E 
Sbjct  362  LIATEQLAYVSFLDNHEKVKLEEVKVPTSTSRKAE------ELRQKMIKIQVSDRAILEL  415

Query  543  QRQQFPVEHVQLLCINCMVAVGHGSDLRKV  572
              + F V H++    +    +    DL  V
Sbjct  416  GTRAF-VSHIESYAKHDCHLICSLDDLNVV  444


 Score = 59.0 bits (141),  Expect = 9e-08, Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 59/171 (35%), Gaps = 13/171 (8%)

Query  25   PTGAGKTRAAAYVAKRHLET----VDGAKVVVLVNRVHLVTQHGEEFRRML-DGRWTVTT  79
            PTG+GKT A      R ++      +    ++L     L +Q     +      +  V T
Sbjct  54   PTGSGKTLAFVLPMMRMIQNARLQPNEIGALILSPSRELCSQIVNVIKPFAEKMKLNVET  113

Query  80   LSGDMGPRAGFGHLA-RCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHTHK  138
            ++G             +  ++L+ T   L   +   +      +    L+V+DE      
Sbjct  114  VTGGQKVDKNIKMFKNKDINILVATPGRLFQIIQHEKTMIARAMKGVQLLVIDEADR---  170

Query  139  DTVYNVIMSQYLELKLQRAQPLPQVLGL-TASPGTGGASKLDGAINHVLQL  188
               +N I  +    ++    P  +  GL +A+        +   + +  Q+
Sbjct  171  ---FNEIQFEDHMREILSCIPKQRRTGLFSATQVKEEDDLMVFGLRNAKQV  218


>sp|Q2H2J1|DBP4_CHAGB ATP-dependent RNA helicase DBP4 OS=Chaetomium 
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 
6347 / NRRL 1970) OX=306901 GN=DBP4 PE=3 SV=1
Length=825

 Score = 80.6 bits (197),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 43/266 (16%), Positives = 79/266 (30%), Gaps = 21/266 (8%)

Query  275  QEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAE--RRLLALFD  332
            +  R+  +  +   DAL+ H        L +         + +  +   E      A   
Sbjct  207  EADRIMDMGFQSAVDALVEHLPTTRQTLLFSATQSKRVSDLARLSLKEPEYVSAHEAAVS  266

Query  333  DRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQG  392
                 L       P   KL+ L   L+         + I+F  + +    +    ++ Q 
Sbjct  267  ATPTNLQQSYIVTPLAEKLDTLFGFLRTNLK----SKIIVFFSSGKQVRFVFESFKRMQP  322

Query  393  LQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNV  452
                        G           Q  + E+  +F       L AT V   G+D P  + 
Sbjct  323  ------------GIPLLHLHGRQKQVARMEITSRFSSAKYGCLFATDVVARGVDFPAVDW  370

Query  453  VVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRE--LKRELINEALETLMEQAVAA  509
            VV+     +  + +   GR AR +    A +  E S E    + L  + +          
Sbjct  371  VVQADCPEDADTYIHRVGRTARYESKGRAVLFLEPSEEAGFLKRLEQKKVPLQKVNVREN  430

Query  510  VQKMDQAEYQAKIRDLQQAALTKRAA  535
             +K  + E Q+            + A
Sbjct  431  KKKSIKNELQSYNFQSPDLKYLGQKA  456


 Score = 56.0 bits (133),  Expect = 9e-07, Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 50/134 (37%), Gaps = 8/134 (6%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT---RAAAYVAKRHLETV--DGAKVVVLVNRVHLVT  61
            Q   I  AL+G++I+    TG+GKT            H +    DG   +++     L  
Sbjct  80   QRAAIPLALKGRDILGAAKTGSGKTLAFLVPVLEKLYHAKWTEYDGLGALIISPTRELAV  139

Query  62   QHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVE  121
            Q  E  R++    +    L                 ++L+CT   +   L   ++  + +
Sbjct  140  QIFEVLRKIGRNHFFSAGLVIGGKSLKEEAERLGRMNILVCTPGRMLQHL---DQTANFD  196

Query  122  LTVFSLIVVDECHH  135
            +    ++V+DE   
Sbjct  197  VNNLQILVLDEADR  210


>sp|O67708|UVRB_AQUAE UvrABC system protein B OS=Aquifex aeolicus 
(strain VF5) OX=224324 GN=uvrB PE=3 SV=1
Length=663

 Score = 80.2 bits (196),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 44/280 (16%), Positives = 103/280 (37%), Gaps = 27/280 (10%)

Query  275  QEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDR  334
               R     L  Y   L      R +     L+      +V+ T       R  A+ +  
Sbjct  355  NGDRSRKEKLVEYGWRLPSALDNRPLKFEEFLERINQVIYVSATPGDWELERSEAVVEQI  414

Query  335  KNELAHLATHGPENPKLEMLEKILQRQFSSSN-SPRGIIFTRTRQSAHSLLLWLQQQQGL  393
                  L       PK+  LE +++          R ++ T T++ A  +  +L +++  
Sbjct  415  VRPTGLLDPVVEVRPKMNQLENLVKEIKEVKKRKERALVLTTTKRLAEEIADYLTERK--  472

Query  394  QTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV  453
                IRA+ +         + +   ++ ++I++ ++G+++++V  ++  EGLD+P  ++V
Sbjct  473  ----IRAKYM--------HSELDAIERAQLIRELREGSIDVIVGVNLLREGLDLPEVSLV  520

Query  454  VRYG-----LLTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEA-------LET  501
                      L +  +++Q  GRA  +    A +  +   +   + I E         E 
Sbjct  521  AIMDADKEGFLRSYQALIQTIGRAARNIHGKAILYADRITKAMEKAIQETQRRRKIQEEF  580

Query  502  LMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRE  541
              +  +         +    I +L   ++ +   +  + E
Sbjct  581  NKKHGITPKSIKKPVKELLAIEELDYVSVPEELPKGVKSE  620


>sp|Q24731|DDX1_DROVI ATP-dependent RNA helicase Ddx1 (Fragment) 
OS=Drosophila virilis OX=7244 GN=Ddx1 PE=3 SV=1
Length=400

 Score = 79.1 bits (193),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 46/282 (16%), Positives = 89/282 (32%), Gaps = 52/282 (18%)

Query  219  NLCHRRSQDPFGDLLKKLMDQI----HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGL  274
            +   R  +  + DL+++L  QI     D   +  +       ++  +V K++E       
Sbjct  2    DEADRLLKQGYTDLIERLHKQIPKITSDGCRLQMIVCS--ATLHAFEVKKMAERLMHFPT  59

Query  275  QEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDR  334
                     +      ++         +   L+   H + V     +    +    F   
Sbjct  60   WGDLKGEDAVPETVHHVVCMVDPHTDSSWQQLRQPIHTDGVHDHDNVHPTNQSPETFSQA  119

Query  335  KNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQ  394
               L           K E   + + +        R IIF RT+Q   +L   L Q+ G  
Sbjct  120  VKLL-----------KGEYCIRAIDQH----KMDRAIIFCRTKQDCDNLEQHLSQRGG--  162

Query  395  TVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDI-------  447
                    L G            +++++ ++ F+   +  L+ T VA  GLDI       
Sbjct  163  -QRFSCVCLHG--------DRKPQERKQNLEMFKRQEVKFLICTDVAARGLDITGLPFSK  213

Query  448  ------------PHCNVVVRYGLLTNEISMVQARGRARADQS  477
                        P+   V+   L  ++ + V   GR    +S
Sbjct  214  DLKYLSENTLNFPNLA-VINITLPDDKSNYVHRIGRVGRPES  254


>sp|Q6LT47|UVRB_PHOPR UvrABC system protein B OS=Photobacterium 
profundum (strain SS9) OX=298386 GN=uvrB PE=3 SV=1
Length=674

 Score = 80.2 bits (196),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 39/238 (16%), Positives = 87/238 (37%), Gaps = 22/238 (9%)

Query  307  QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSN  366
            Q  Y      K +I  +   +          L  +    P   +++ L   ++       
Sbjct  389  QTIYVSATPGKYEIEQSGNDIAEQVVRPTGLLDPIIEVRPVATQVDDLLSEIR--IREVK  446

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
              R ++ T T++ +  L  +L +       +++ + L         + +   ++ E+I+ 
Sbjct  447  GERVLVTTLTKRMSEDLAEYLAEH------NVKVRYL--------HSDIDTVERVEIIRD  492

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLDIP  ++V          L +E S++Q  GRA  +    A 
Sbjct  493  LRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLEGRAI  552

Query  482  VATEGSRELKRELINEALETLMEQAVAAVQK-MDQAEYQAKIRDLQQAALTKRAAQAA  538
            +  +         I E      +QA+   +  +       K+ D+ +       ++  
Sbjct  553  LYGDKITGSMERAIFETNRRREKQALHNKKNGITPQGLNKKVGDILELGKPSSRSRTN  610


 Score = 34.4 bits (77),  Expect = 4.0, Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 20/66 (30%), Gaps = 7/66 (11%)

Query  8   WEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEF  67
            E +   L  + ++    TG+GKT   A V              ++     L  Q   E 
Sbjct  25  LEGLDSGLAHQTLLGV--TGSGKTFTIANVIAE-----SNRPTFIMAPNKTLAAQLYGEM  77

Query  68  RRMLDG  73
           +     
Sbjct  78  KEFFPD  83


>sp|Q8CPZ0|UVRB_STAES UvrABC system protein B OS=Staphylococcus 
epidermidis (strain ATCC 12228 / FDA PCI 1200) OX=176280 GN=uvrB 
PE=3 SV=1
Length=661

 Score = 80.2 bits (196),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 34/215 (16%), Positives = 80/215 (37%), Gaps = 27/215 (13%)

Query  349  PKLEMLEKILQR-QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG  407
            P    ++ +L   Q       R ++ T T++ +  L  ++++               G  
Sbjct  428  PTENQIDDLLSEIQDRVDKDERVLVTTLTKKMSEDLTTYMKEA--------------GIK  473

Query  408  NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNE  462
             +   + +   ++ E+I+  + GT + +V  ++  EG+DIP  ++VV         L ++
Sbjct  474  VNYLHSEIKTLERIEIIRDLRMGTYDAIVGINLLREGIDIPEVSLVVILDADKEGFLRSD  533

Query  463  ISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQA----EY  518
             S++Q  GRA  +      +  +   ++   +     ET   + +      +        
Sbjct  534  RSLIQTIGRAARNDKGEVIMYAD---KITDSMQYAIDETQRRREIQIAHNKEHGITPKTI  590

Query  519  QAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQ  553
              KI D+  A +        Q+    ++   +  Q
Sbjct  591  NKKIHDVISATVESDETNQQQQTELPKKMTKKERQ  625


>sp|O33395|UVRB_NEIMB UvrABC system protein B OS=Neisseria meningitidis 
serogroup B (strain ATCC BAA-335 / MC58) OX=122586 
GN=uvrB PE=3 SV=3
Length=675

 Score = 80.2 bits (196),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 30/167 (18%), Positives = 68/167 (41%), Gaps = 20/167 (12%)

Query  365  SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI  424
                R ++ T T++ A  L  +  +              +G       + +   ++ E+I
Sbjct  449  EKGERVLVTTLTKRMAEQLTDYYSE--------------LGIKVRYLHSDIDTVERVEII  494

Query  425  QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVY  479
            +  + G  ++LV  ++  EGLDIP  ++V          L +  S++Q  GRA  + +  
Sbjct  495  RDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAARNVNGV  554

Query  480  AFVATEGSRELKRELINEALETLMEQ-AVAAVQKMDQAEYQAKIRDL  525
            A +  +   +  +  I+E      +Q      Q +   + + +++D+
Sbjct  555  AILYADKITDSMKAAIDETERRREKQIKFNEEQGIVPQQIKKQVKDI  601


>sp|Q9H8H2|DDX31_HUMAN ATP-dependent DNA helicase DDX31 OS=Homo 
sapiens OX=9606 GN=DDX31 PE=1 SV=2
Length=851

 Score = 80.6 bits (197),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 80/267 (30%), Gaps = 21/267 (8%)

Query  312  REHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGI  371
            ++   +          L  F   ++   H+    P   +L  L   + ++       + +
Sbjct  456  KDKAVQEVCPPPAGDKLDSFAIPESLKQHVTVV-PSKLRLVCLAAFILQKCKFEEDQKMV  514

Query  372  IFTRTRQSAH----SLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF  427
            +F  + +         L  L    G           +          M Q ++  V Q+F
Sbjct  515  VFFSSCELVEFHYSLFLQTLLSSSGAPASGQLPSASMRLKFLRLHGGMEQEERTAVFQEF  574

Query  428  QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARAD--QSVYAFVAT  484
                  +L+ T VA  GLD+P    +V+Y   ++    +   GR AR     S    +A 
Sbjct  575  SHSRRGVLLCTDVAARGLDLPQVTWIVQYNAPSSPAEYIHRIGRTARIGCHGSSLLILAP  634

Query  485  EGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQR  544
              +         E + +L    +   +   +       RD       K     AQ+ +  
Sbjct  635  SEA---------EYVNSLASHKINVSEIKMEDILCVLTRD----DCFKGKRWGAQKSHAV  681

Query  545  QQFPVEHVQLLCINCMVAVGHGSDLRK  571
                +     +         H S+ R 
Sbjct  682  GPQEIRERATVLQTVFEDYVHSSERRV  708


 Score = 56.3 bits (134),  Expect = 7e-07, Method: Composition-based stats.
 Identities = 41/199 (21%), Positives = 78/199 (39%), Gaps = 15/199 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-------AAYVAKRHLETVDGAKVVVLVNRVHL  59
            Q + I   LEG++ ++   TG+GKT A       +    +  ++  DG   +VLV    L
Sbjct  258  QKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDGPYALVLVPTREL  317

Query  60   VTQHGEEFRRMLDG--RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE  117
              Q  +  +++L          L G    ++    L +  ++LI T   L   + S +  
Sbjct  318  ALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIKSTK--  375

Query  118  EHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASK  177
             ++  +    +V DE      D  +   ++  L       Q    VL L+A+   G    
Sbjct  376  -NIHFSRLRWLVFDEADR-ILDLGFEKDITVILNAVNAECQKRQNVL-LSATLTEGVTRL  432

Query  178  LDGAINHVLQLCANLDTWC  196
             D +++  + + + LD   
Sbjct  433  ADISLHDPVSI-SVLDKSH  450


>sp|Q944S1|RH22_ARATH DEAD-box ATP-dependent RNA helicase 22 OS=Arabidopsis 
thaliana OX=3702 GN=RH22 PE=2 SV=1
Length=581

 Score = 80.2 bits (196),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 63/174 (36%), Gaps = 19/174 (11%)

Query  368  PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF  427
             R ++F  T ++  ++   L++         +   L               ++  ++  F
Sbjct  425  ERTMVFANTVEAVEAVADILEKASIQCYRYHKNHKL--------------DERANILADF  470

Query  428  QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEG  486
            ++ T  + V T  A  G+D+P+ + V++    ++ +  +   GR ARA Q       T  
Sbjct  471  RE-TGGVFVCTDAAARGVDVPNVSHVIQADFASSAVDFLHRIGRTARAGQYGTV---TSL  526

Query  487  SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR  540
              E  R+L+    E +            +  ++ K++        +     A R
Sbjct  527  YTEANRDLVEAIREAVKMGQPVETAFSRKRGFRNKVKKRAFLKAEEAEEPQAVR  580


 Score = 57.1 bits (136),  Expect = 4e-07, Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 42/134 (31%), Gaps = 17/134 (13%)

Query  15   LEGKNIIIWLPTGAGKTR------------AAAY--VAKRHLETVDGAKV-VVLVNRVHL  59
            L GK++I+   TG+GKT              A    V  R         + ++L   V L
Sbjct  115  LSGKDVIVAAETGSGKTHGYLAPIIDQLTNTALDSEVTNREERPFPLKNISLILCPNVML  174

Query  60   VTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
              Q       ++D           +    G+    R  D+++ T   L   +        
Sbjct  175  CEQVVRMVNGLVDEDGNPLLRVEAVCGSQGWPD--RLPDIIVSTPAALLNNIEPKRNRRL  232

Query  120  VELTVFSLIVVDEC  133
              L     +V DE 
Sbjct  233  EFLRCVKYVVFDEA  246


>sp|Q7RZ35|DBP4_NEUCR ATP-dependent RNA helicase dbp-4 OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / 
DSM 1257 / FGSC 987) OX=367110 GN=dbp-4 PE=3 SV=1
Length=823

 Score = 80.6 bits (197),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 36/218 (17%), Positives = 69/218 (32%), Gaps = 19/218 (9%)

Query  275  QEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAE--RRLLALFD  332
            +  R+  +  ++  DAL+ H        L +         + +  +   E      A   
Sbjct  211  EADRIMDMGFQQAVDALVEHLPKSRQTLLFSATQSKRVSDLARLSLKDPEYVSVHEAAAS  270

Query  333  DRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQG  392
                 L       P   KL+ L   L+         + I+F  + +    +    ++ Q 
Sbjct  271  ATPVGLQQHYIVTPLPEKLDTLWGFLRTNLK----SKIIVFMSSGKQVRFVYESFKRMQP  326

Query  393  LQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNV  452
                        G           Q  + E+  +F     + L AT V   G+D P  + 
Sbjct  327  ------------GIPLLHLHGRQKQIARLEITNRFTSAKYSCLFATDVVARGVDFPAVDW  374

Query  453  VVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRE  489
            V++     +  + +   GR AR +    A +  + S E
Sbjct  375  VIQVDCPEDADTYIHRVGRTARYESKGRAVLFLDPSEE  412


 Score = 56.0 bits (133),  Expect = 1e-06, Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 10/135 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAY------VAKRHLETVDGAKVVVLVNRVHLV  60
            Q   I  AL+G++I+    TG+GKT  A        + +      DG   +++     L 
Sbjct  84   QRAAIPLALKGQDILGAARTGSGKTL-AFLVPVLEKLYRARWTEYDGLGALIISPTRELA  142

Query  61   TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
             Q  E  R++         L                 ++L+CT   +   L   ++    
Sbjct  143  VQIFEVLRKIGRNHSFSAGLVIGGKSLKEEAERLGRMNILVCTPGRMLQHL---DQTAGF  199

Query  121  ELTVFSLIVVDECHH  135
            ++    ++V+DE   
Sbjct  200  DVDNLQMLVLDEADR  214


>sp|B7LVT0|RAPA_ESCF3 RNA polymerase-associated protein RapA OS=Escherichia 
fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 
18766 / IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / 
NCTC 12128 / CDC 0568-73) OX=585054 GN=rapA PE=3 SV=1
Length=968

 Score = 80.6 bits (197),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 80/476 (17%), Positives = 152/476 (32%), Gaps = 44/476 (9%)

Query  5    SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ  62
             +Q  +           +++    G GKT  A  +  + L +    +V+++V    L  Q
Sbjct  156  PHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVP-ETLQHQ  214

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
               E  R  + R+ +         +    +      L+IC+   L  A  S +  EH+  
Sbjct  215  WLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICS---LDFARRSKQRLEHLCE  271

Query  123  TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG  180
              + L+VVDE HH    +D           +   Q A+ +P VL LTA+P      +  G
Sbjct  272  AEWDLLVVDEAHHLVWSEDAPSRE-----YQAIEQLAEHVPGVLLLTATP------EQLG  320

Query  181  AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI  240
              +H  +L   LD            +  + + +P                D L  L + I
Sbjct  321  MESHFARL-RLLDPNRFHDFAQFVEE--QKNYRPVADAVAMLLAGNKLSNDELNMLGEMI  377

Query  241  HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV  300
             +    P L          Q   +   +  +      RV   + R         +     
Sbjct  378  GEQDIEPLLQAANSNSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIK  437

Query  301  DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG---PENPKLEMLEKI  357
              L        +          AE R   +    +        +      +P++E L   
Sbjct  438  LPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGY  497

Query  358  LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ  417
            L        S + ++      +A  L   L++++G++                    M+ 
Sbjct  498  LTSH----RSQKVLVICAKAATALQLEQVLREREGIRAAVFH-------------EGMSI  540

Query  418  RDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
             ++      F  +D    +L+ + +  EG +    + +V + L  N   + Q  GR
Sbjct  541  IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR  596


>sp|Q3E9C3|RH58_ARATH DEAD-box ATP-dependent RNA helicase 58, 
chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RH58 PE=2 SV=1
Length=472

 Score = 79.5 bits (194),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 29/162 (18%), Positives = 60/162 (37%), Gaps = 19/162 (12%)

Query  355  EKILQRQFSSSNSPRGIIFT-----RTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS  409
             ++L     S      IIF      +++++ +     L  +    +     ++L+  G  
Sbjct  316  HQVLLALLESDAPESAIIFVGEQSEKSKKAGNDPSTTLLMEFLKTSYKGSLEILLLEG--  373

Query  410  SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR  469
                 M    +   + + + G   LLV+T +A  G+D+P    +  + L       +   
Sbjct  374  ----DMNFNSRAASLTEIRQGGGFLLVSTDIAARGIDLPETTHIFNFDLPQTVTDYLHRA  429

Query  470  GRARA-----DQSVYAFVATEGSRELKRELINEAL---ETLM  503
            GRA        + + A + T   R + +   NE +   E +M
Sbjct  430  GRAGRKPFSDRKCIVANLITSEERFVLQRYENELMFSCEEMM  471


 Score = 53.3 bits (126),  Expect = 5e-06, Method: Composition-based stats.
 Identities = 28/134 (21%), Positives = 48/134 (36%), Gaps = 12/134 (9%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE  65
            Q E +     G++ I+   TG+GKT     +    +     + + V++V    L  Q  +
Sbjct  103  QREALPTLFTGRDCILHAQTGSGKTLTYLLLIFSLINPQRSSVQAVIVVPTRELGMQVTK  162

Query  66   EFRRML-------DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEE  118
              R +         G   +  L G    R      A    +L+ T   L   L   E+  
Sbjct  163  VARMLAAKSEIDVKGCTVMALLDGGTLRRHKSWLKAEPPAILVATVASLCHML---EKHI  219

Query  119  HVELTVFSLIVVDE  132
               +    ++VVDE
Sbjct  220  F-RIDSVRVLVVDE  232


>sp|Q09916|HAS1_SCHPO ATP-dependent RNA helicase has1 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=has1 
PE=1 SV=1
Length=578

 Score = 79.8 bits (195),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 23/123 (19%), Positives = 43/123 (35%), Gaps = 14/123 (11%)

Query  357  ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT  416
            +L      +   + I+F  +  S   +   L        +D+    L G           
Sbjct  326  LLFSFLKRNLKKKVIVFMSSCASVKYMAELL------NYIDLPVLDLHG--------KQK  371

Query  417  QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQ  476
            Q+ +     +F +    +L+ T+VA  GLDIP  + +V+Y    +    +   GR     
Sbjct  372  QQRRTNTFFEFCNAEKGILLCTNVAARGLDIPAVDWIVQYDPPDDPRDYIHRVGRTARGT  431

Query  477  SVY  479
               
Sbjct  432  KGT  434


 Score = 52.5 bits (124),  Expect = 9e-06, Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 50/136 (37%), Gaps = 11/136 (8%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRH------LETVDGAKVVVLVNRVHLV  60
            Q   I P L G++++    TG+GKT  A  +           +  +G  V+++     L 
Sbjct  116  QKRSIPPLLAGRDVLGAAKTGSGKTL-AFLIPTIEMLYALKFKPRNGTGVIIISPTRELA  174

Query  61   TQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH  119
             Q     + +L         + G    RA    L +  +LL+ T   L   L + +    
Sbjct  175  LQIFGVAKELLKYHHQTFGIVIGGANRRAEADKLVKGVNLLVATPGRLLDHLQNTKGFVF  234

Query  120  VELTVFSLIVVDECHH  135
              L     +V+DE   
Sbjct  235  RNLRS---LVIDEADR  247


>sp|A4R8B5|HAS1_PYRO7 ATP-dependent RNA helicase HAS1 OS=Pyricularia 
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 
GN=HAS1 PE=3 SV=2
Length=587

 Score = 79.8 bits (195),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 39/259 (15%), Positives = 78/259 (30%), Gaps = 44/259 (17%)

Query  253  FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHR  312
             G      +  KLS+   L      R+  L   +    +  +     +D    + +    
Sbjct  219  IGGANRRAEAEKLSKGVNLLIATPGRL--LDHLQNTPFVFKNLRSLVIDEADRILEIGFE  276

Query  313  EHVTKTQILCAERRLLALFDD----RKNELAHLATHG----------PENPKLEMLEK--  356
            + + +   +  + R   LF      +  +LA ++              E   +E LE+  
Sbjct  277  DEMRQIIKILPKERQSMLFSATQTTKVEDLARVSLRPGPLYLNVDEEKEYSTVEGLEQGY  336

Query  357  ----------ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA  406
                      +L          + I+F  +  S       L          I  Q+L   
Sbjct  337  VVCEADKRFILLFSFLQKMKKKKIIVFFSSCNSVKYYAELLN--------YIDCQVL---  385

Query  407  GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV  466
                      Q+ +     +F +     L+ T VA  GLDIP  + +V++    +    +
Sbjct  386  ---DLHGKQKQQKRTNTFFEFCNADRGTLICTDVAARGLDIPAVDWIVQFDPPDDPRDYI  442

Query  467  QARGRARAD--QSVYAFVA  483
               GR      +   + + 
Sbjct  443  HRVGRTARGTNKKGRSLMF  461


 Score = 51.0 bits (120),  Expect = 3e-05, Method: Composition-based stats.
 Identities = 30/127 (24%), Positives = 46/127 (36%), Gaps = 10/127 (8%)

Query  15   LEGKNIIIWLPTGAGKT---RAAAYVAKRHLETVD--GAKVVVLVNRVHLVTQHGEEFRR  69
            L GK+++    TG+GKT      A    R L+     G  V+V+     L  Q     R 
Sbjct  147  LAGKDVLGAAKTGSGKTLAFLIPAVEMLRSLKFKPRNGTGVIVVSPTRELALQIFGVARD  206

Query  70   MLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLI  128
            ++         + G    RA    L++  +LLI T   L   L +              +
Sbjct  207  LMKHHSQTYGIVIGGANRRAEAEKLSKGVNLLIATPGRLLDHLQNTP----FVFKNLRSL  262

Query  129  VVDECHH  135
            V+DE   
Sbjct  263  VIDEADR  269


>sp|Q97LQ2|UVRB_CLOAB UvrABC system protein B OS=Clostridium acetobutylicum 
(strain ATCC 824 / DSM 792 / JCM 1419 / IAM 19013 
/ LMG 5710 / NBRC 13948 / NRRL B-527 / VKM B-1787 / 2291 
/ W) OX=272562 GN=uvrB PE=3 SV=1
Length=666

 Score = 80.2 bits (196),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 72/193 (37%), Gaps = 26/193 (13%)

Query  365  SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI  424
             N  R ++ T T++ A  L  +L+               +G   +   + +   ++ ++I
Sbjct  442  QNGFRILVTTLTKKMAEDLTDYLKD--------------LGIKTTYMHSDIDTLERMKII  487

Query  425  QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVY  479
            +  + G  ++LV  ++  EGLDIP   +V          L +E S++Q  GRA  +    
Sbjct  488  KDVRTGEFDVLVGINLLREGLDIPEVALVAILDADKEGFLRSERSLIQTIGRAARNSESR  547

Query  480  AFVATEGSRELKRELINEA-------LETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTK  532
              +  +   +   + I+E        +E   +  +              I ++ +     
Sbjct  548  VIMYGDKITDAMGKAISETKRRRKIQIEYNEKNGIKPTTIKKAVRDVIGISEVAEGKTEY  607

Query  533  RAAQAAQRENQRQ  545
            ++   A + + + 
Sbjct  608  KSMDEAVKADNKN  620


>sp|A7MIC1|RAPA_CROS8 RNA polymerase-associated protein RapA OS=Cronobacter 
sakazakii (strain ATCC BAA-894) OX=290339 GN=rapA 
PE=3 SV=1
Length=968

 Score = 80.6 bits (197),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 77/476 (16%), Positives = 152/476 (32%), Gaps = 44/476 (9%)

Query  5    SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ  62
             +Q  +           +++    G GKT  A  +  + L      +V+++V    L  Q
Sbjct  156  PHQLNIANDVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLAGAAERVLIVVP-ETLQHQ  214

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
               E  R  + R+++         +    +      L+IC+   L     + +  EH+  
Sbjct  215  WLVEMLRRFNLRFSLFDDERYAEAQHESDNPFDTEQLVICS---LDFVRRNKQRLEHLCD  271

Query  123  TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG  180
              + L+VVDE HH    +D           +   Q A+ +P VL LTA+P      +  G
Sbjct  272  AEWDLLVVDEAHHLVWSEDAPSRE-----YQAIEQLAERVPGVLLLTATP------EQLG  320

Query  181  AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI  240
              +H  +L   LD            +  + + +P                + L  L + I
Sbjct  321  MESHFARL-RLLDPNRFHDFAQFVEE--QQNYRPVADAVALLLAGTHLSDEQLNTLSELI  377

Query  241  HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV  300
             +    P L      +   +   +   +  +      RV   + R         +     
Sbjct  378  GEQDIEPLLQTANSDRDGAESARQELVSMLMDRHGTSRVLFRNTRNGVKGFPQRELHTIK  437

Query  301  DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG---PENPKLEMLEKI  357
              L        +          AE R   +    +         G     +P++E L   
Sbjct  438  LPLPTQYQTAIKVSGIMGARKSAEERARDMLYPEQIYQEFEGDSGTWWNFDPRVEWLMGY  497

Query  358  LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ  417
            L        S + ++      +A  L   L++++G++                    M+ 
Sbjct  498  LTSH----RSQKVLVICAKAATALQLEQVLREREGIRAAVFH-------------EGMSI  540

Query  418  RDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
             ++      F  +D    +L+ + +  EG +    + +V + L  N   + Q  GR
Sbjct  541  IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASQLVMFDLPFNPDLLEQRIGR  596


>sp|Q7S2N9|HAS1_NEUCR ATP-dependent RNA helicase has-1 OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / 
DSM 1257 / FGSC 987) OX=367110 GN=has-1 PE=3 SV=1
Length=578

 Score = 79.8 bits (195),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 23/122 (19%), Positives = 42/122 (34%), Gaps = 14/122 (11%)

Query  357  ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT  416
            +L          + I+F  +  S       LQ       +D++   L G           
Sbjct  343  LLFSFLKKMQKKKVIVFFSSCNSVKYYSELLQ------YIDLQVLDLHG--------KQK  388

Query  417  QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQ  476
            Q+ +     +F +     L+ T VA  GLDIP  + +V++    +    +   GR     
Sbjct  389  QQKRTNTFFEFCNAKQGTLICTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGN  448

Query  477  SV  478
            + 
Sbjct  449  NT  450


 Score = 49.0 bits (115),  Expect = 1e-04, Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 42/127 (33%), Gaps = 10/127 (8%)

Query  15   LEGKNIIIWLPTGAGKT---RAAAYVAKRHLETVD--GAKVVVLVNRVHLVTQHGEEFRR  69
            L GK+++    TG+GKT      A      L      G   +V+     L  Q     R 
Sbjct  142  LAGKDVLGAAKTGSGKTLAFLIPAIEMLSSLRFKPRNGTGAIVVTPTRELALQIFGVARE  201

Query  70   MLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLI  128
            ++         + G    RA    L +  +LLI T   L   L +              +
Sbjct  202  LMKNHSQTYGVVIGGANRRAEAEKLGKGVNLLIATPGRLLDHLQNTP----FVFKNMRSL  257

Query  129  VVDECHH  135
            ++DE   
Sbjct  258  IIDEADR  264


>sp|F1LPQ2|ASCC3_RAT Activating signal cointegrator 1 complex 
subunit 3 OS=Rattus norvegicus OX=10116 GN=Ascc3 PE=3 SV=1
Length=2197

 Score = 80.6 bits (197),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 69/164 (42%), Gaps = 18/164 (11%)

Query  18   KNIIIWLPTGAGKTRAAAYVAKRHLET--------VDGAKVVVLVNRVHLVTQHGEEFRR  69
            +N++I  PTGAGKT  A       +           +  K+V +     L  +    F +
Sbjct  494  ENMLICAPTGAGKTNIAMLTVLHEIRQHFHQGVLKKNEFKIVYVAPMKALAAEMTNYFSK  553

Query  70   MLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS-L  127
             L+     V  L+GDM              +L+ T E     + + +    V L+    L
Sbjct  554  RLEPLGIVVKELTGDMQLS---KSEILRTQMLVTTPEKW--DVVTRKSVGDVALSQIVKL  608

Query  128  IVVDECH--HTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS  169
            +++DE H  H  +  V   I+++ L   ++  Q + ++LGL+A+
Sbjct  609  LILDEVHLLHEDRGPVLESIVARTLRQ-VESTQSMIRILGLSAT  651


 Score = 71.0 bits (172),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 60/152 (39%), Gaps = 8/152 (5%)

Query  19    NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEE--FRRMLDGRWT  76
             N+++  PTG+GKT AA     R       +K V +     LV +  ++   R        
Sbjct  1345  NVLLGAPTGSGKTVAAELAIFRVFNKYPTSKAVYIAPLKALVRERMDDWKIRIEEKLGKK  1404

Query  77    VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECH-H  135
             V  L+GD+ P           DL++ T E       S +   +V+    +++++DE H  
Sbjct  1405  VIELTGDVTPDM---KSIAKADLIVTTPEKWDGVSRSWQNRSYVQ--QVNILIIDEIHLL  1459

Query  136   THKDTVYNVIMSQYLELKLQRAQPLPQVLGLT  167
               +      ++           +   +++GL+
Sbjct  1460  GEERGPVLEVIVSRTNFISSHTEKPVRIVGLS  1491


 Score = 38.6 bits (88),  Expect = 0.23, Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 69/196 (35%), Gaps = 25/196 (13%)

Query  321   LCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSA  380
                +     +    K       TH P+ P L + E++L            I F  T +  
Sbjct  1530  FPGQHYCPRMASMNKPAFQESHTHCPDRPCLLLPERMLSSM----TKLELIAFLATEEDP  1585

Query  381   HSLLLWLQQQQGLQTVDIRAQLL---IGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA  437
                L   +Q+       +R   L   +  G       + +RD++ V + F +  + +L+A
Sbjct  1586  KQWLNMDEQEMENIIATVRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLIA  1645

Query  438   TSVAEEGLDIPHCNVVV-----------RY-GLLTNEISMVQARGRARA----DQSVYAF  481
             TS    G++ P   V++           RY         ++Q  GRA      DQ     
Sbjct  1646  TSTLAWGVNFPAHLVIIKGTEYYDGKTRRYVDFPIT--DVLQMMGRAGRPQFDDQGKAVI  1703

Query  482   VATEGSRELKRELINE  497
             +  +  ++  ++ + E
Sbjct  1704  LVHDIKKDFYKKFLYE  1719


>sp|Q3A8D0|UVRB_SYNC1 UvrABC system protein B OS=Syntrophotalea 
carbinolica (strain DSM 2380 / NBRC 103641 / GraBd1) OX=338963 
GN=uvrB PE=3 SV=1
Length=667

 Score = 80.2 bits (196),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 78/199 (39%), Gaps = 21/199 (11%)

Query  304  AALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFS  363
              +Q  Y        ++  A+  ++         L       P   +++ L   ++   +
Sbjct  384  KGIQTIYVSATPADYELRKADGVVVEQIIRPTGLLDPPIDVRPAKDQVDDLIHEIR--LT  441

Query  364  SSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEV  423
               + R ++ T T++ A  L  +L +              +G       + +   ++ ++
Sbjct  442  IKQNERVLVTTLTKRMAEELTGYLGE--------------LGIKVRYLHSDIDTVERMQI  487

Query  424  IQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSV  478
            +++ ++G  ++LV  ++  EGLDIP  ++V          L +E S++Q  GRA  + + 
Sbjct  488  LRELREGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTCGRAARNVAG  547

Query  479  YAFVATEGSRELKRELINE  497
               +  +      R  ++E
Sbjct  548  RVIMYADRITRSMRACLDE  566


>sp|Q6BXG0|DBP4_DEBHA ATP-dependent RNA helicase DBP4 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / 
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DBP4 PE=3 SV=2
Length=766

 Score = 80.2 bits (196),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 57/178 (32%), Gaps = 20/178 (11%)

Query  331  FDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQ  390
                   L       P + KL++L   ++         + ++F  + +         +  
Sbjct  259  LSATPESLEQYYIKIPLDEKLDVLWSFIKSHLK----SKILVFFSSSKQVQYAYETFRTL  314

Query  391  QGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHC  450
            Q             G           Q  + E   KF       L AT +   GLD P  
Sbjct  315  QP------------GISLLKLYGRHKQTSRMETTMKFSQAQHACLFATDIVARGLDFPAI  362

Query  451  NVVVRYGLLTNEISMVQARGRA----RADQSVYAFVATEGSRELKRELINEALETLME  504
            + VV+     +  + V   GRA    RA +S+   + +E +  LKR   N+     M 
Sbjct  363  DWVVQIDCPEDAATYVHRVGRAARFGRAGKSLMMLLPSEENGMLKRLNNNKIELKFMN  420


 Score = 53.3 bits (126),  Expect = 8e-06, Method: Composition-based stats.
 Identities = 23/136 (17%), Positives = 48/136 (35%), Gaps = 10/136 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAY------VAKRHLETVDGAKVVVLVNRVHLV  60
            Q + I  +L+G++++    TG+GKT  A        + +  +   DG   +++     L 
Sbjct  73   QKKTIPISLKGEDVMGTAKTGSGKTL-AFLIPTIESLIRNKITEYDGLAALIISPTRELA  131

Query  61   TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
             Q  E   ++         L                 ++L+ T   +   L        +
Sbjct  132  VQIFEVLVKIGKHNNFSAGLVTGGKDVKYEKERVSKMNILVGTPGRISQHLNESVG---M  188

Query  121  ELTVFSLIVVDECHHT  136
            E +   ++V+DE    
Sbjct  189  ETSNLQVLVLDEADRC  204


>sp|Q4WM60|DBP4_ASPFU ATP-dependent RNA helicase dbp4 OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 
/ Af293) OX=330879 GN=dbp4 PE=3 SV=1
Length=787

 Score = 80.2 bits (196),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 43/254 (17%), Positives = 85/254 (33%), Gaps = 21/254 (8%)

Query  275  QEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDR  334
            +  R+  L  ++  DA++ H   +    L        +        L     +       
Sbjct  201  EADRILDLGFQQTVDAIIGH-LPKERQTLLFSATQTKKVSDLARLSLQDPEYVAVHETAS  259

Query  335  KNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQ  394
                + L  H    P  + L  IL     S+   + ++F  + +    +    +  Q   
Sbjct  260  SATPSKLQQHYVITPLPQKL-DILWSFIRSNLKSKTMVFLSSGKQVRFVYESFRHLQP--  316

Query  395  TVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV  454
                      G           Q  + +++ +F      +L +T VA  GLD P  + V+
Sbjct  317  ----------GIPLMHLHGRQKQGGRLDIVTRFSQSKHCVLFSTDVAARGLDFPAVDWVI  366

Query  455  RYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM  513
            +     +  + +   GR AR ++   A +  + S E         L+ L ++ V   +  
Sbjct  367  QLDCPEDADTYIHRVGRTARYEREGRAVLFLDPSEE------EGMLKRLEQKKVPIEKIN  420

Query  514  DQAEYQAKIRDLQQ  527
             +A  Q  I+D  Q
Sbjct  421  IKANKQQSIKDQLQ  434


 Score = 54.4 bits (129),  Expect = 3e-06, Method: Composition-based stats.
 Identities = 28/135 (21%), Positives = 48/135 (36%), Gaps = 10/135 (7%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAY--VAKRHLETV----DGAKVVVLVNRVHLV  60
            Q   I  AL+G++I+    TG+GKT  A    V +          DG   ++L     L 
Sbjct  74   QSRAISHALKGRDILGAAKTGSGKTL-AFLVPVLENLYRKQWAEHDGLGALILSPTRELA  132

Query  61   TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV  120
             Q  E  R++         L                 ++L+CT   +   L   ++    
Sbjct  133  IQIFEVLRKIGRYHTFSAGLVIGGKSLKEEQERLGRMNILVCTPGRMLQHL---DQTALF  189

Query  121  ELTVFSLIVVDECHH  135
            +     ++V+DE   
Sbjct  190  DTYNLQMLVLDEADR  204


>sp|Q6FN65|ROK1_CANGA ATP-dependent RNA helicase ROK1 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=ROK1 PE=3 SV=1
Length=565

 Score = 79.8 bits (195),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 57/340 (17%), Positives = 115/340 (34%), Gaps = 32/340 (9%)

Query  143  NVIMSQYLELKLQRAQPLPQVL---GLTASPGTGGASKLDGAINHVLQL--CANLDTWCI  197
            N+I + + E    + + +P  L    L A   TG    L   I  + Q+    N      
Sbjct  138  NLIENHFTEPTPIQCEAIPLCLNGRDLLACAPTGSGKTLAFLIPLLQQIIEEKNFSGVKG  197

Query  198  MSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPF------GDLLKKLMDQ-IHDHLEMPELS  250
            +          +   +  K     +   + P         L  KL ++ I D      +S
Sbjct  198  LIISPTKELATQIFNECVKLSKRIYLDKKRPLQVAILSKSLGAKLRNKVISDKKYDLIIS  257

Query  251  RKFGT-QMYEQQVVKLSEAAALAGLQEQRVY-ALHLRRYNDALLIHDTVRAVDALAALQD  308
                   + + + + LS    L   +  +++    + + +D L          ++ +   
Sbjct  258  TPLRLIDVVKNEALDLSNVKHLIFDEADKLFDKTFIEQTDDILNSCTDPSMRKSMFSATI  317

Query  309  FYHREHVTKTQILCAERRLLALFDDRKNELAH-LATHGPENPKLEMLEKILQRQFSSSNS  367
                E    + +    R ++   +     +   L   G E  KL  + +++Q+       
Sbjct  318  PSSVEETANSIMNDPVRVIIGHKEAANTNIEQKLIFCGNEEGKLIAIRQLVQQ---GEFK  374

Query  368  PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF  427
            P  IIF  +   A +L         L    I   ++            T   ++++I++F
Sbjct  375  PPIIIFLESIARAKAL------YHELMYDRINVDVI--------HAERTAIQREKIIERF  420

Query  428  QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
            + G L  L+ T V   G+D    N+V+ Y + T   + V 
Sbjct  421  KTGELWCLICTDVLARGIDFKGVNLVINYDVPTTAQAYVH  460


 Score = 58.3 bits (139),  Expect = 2e-07, Method: Composition-based stats.
 Identities = 30/138 (22%), Positives = 56/138 (41%), Gaps = 15/138 (11%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKT---RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQH  63
            Q E I   L G++++   PTG+GKT              +   G K +++     L TQ 
Sbjct  151  QCEAIPLCLNGRDLLACAPTGSGKTLAFLIPLLQQIIEEKNFSGVKGLIISPTKELATQI  210

Query  64   GEEFRRMLDGRW-------TVTTLSGDMGPRAGFGHLA-RCHDLLICTAELLQMALTSPE  115
              E  ++    +        V  LS  +G +     ++ + +DL+I T   L   +    
Sbjct  211  FNECVKLSKRIYLDKKRPLQVAILSKSLGAKLRNKVISDKKYDLIISTPLRLIDVV----  266

Query  116  EEEHVELTVFSLIVVDEC  133
            + E ++L+    ++ DE 
Sbjct  267  KNEALDLSNVKHLIFDEA  284


>sp|Q56998|UVRB_ZYMMO UvrABC system protein B OS=Zymomonas mobilis 
subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) OX=264203 
GN=uvrB PE=3 SV=2
Length=740

 Score = 80.2 bits (196),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 29/163 (18%), Positives = 65/163 (40%), Gaps = 20/163 (12%)

Query  369  RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ  428
            R ++ T T++ A  L  ++ +               G       + +   ++ E+I+  +
Sbjct  478  RSLVTTLTKRMAEDLTEYMYEA--------------GLKVRYMHSDVETIERIELIRDLR  523

Query  429  DGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAFVA  483
             G  ++L+  ++  EGLDIP C +V          L +E S++Q  GRA  +      + 
Sbjct  524  LGVYDVLIGINLLREGLDIPECGLVAVLDADKEGFLRSETSLIQTIGRAARNAEGRVILY  583

Query  484  TEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDL  525
             +  +  + R +       + + A      +  A  + ++ D+
Sbjct  584  GDKITGSMARAMAETERRRIKQIAWNKAHNITPATVKRQVDDI  626


 Score = 36.7 bits (83),  Expect = 0.82, Method: Composition-based stats.
 Identities = 13/47 (28%), Positives = 19/47 (40%), Gaps = 5/47 (11%)

Query  26   TGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLD  72
            TG+GKT   A V ++          ++L     L  Q   EF+R   
Sbjct  71   TGSGKTFTMAKVIEKLQRPS-----LILAPNKILAAQLYGEFKRFFP  112


>sp|A9WT85|UVRB_RENSM UvrABC system protein B OS=Renibacterium 
salmoninarum (strain ATCC 33209 / DSM 20767 / JCM 11484 / NBRC 
15589 / NCIMB 2235) OX=288705 GN=uvrB PE=3 SV=1
Length=693

 Score = 79.8 bits (195),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 34/203 (17%), Positives = 74/203 (36%), Gaps = 27/203 (13%)

Query  365  SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI  424
                R ++ T T++ A  L  +L                 G       + +    + E++
Sbjct  451  ERDERVLVTTLTKRMAEDLTEYLLG--------------HGVKVQYLHSDVDTLRRVELL  496

Query  425  QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVY  479
            ++ + G  ++LV  ++  EGLD+P  ++V          L +  S++Q  GRA  + S  
Sbjct  497  RELRLGVFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSATSLIQTIGRAARNVSGE  556

Query  480  AFVATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRA----  534
              +  +  +  + + +        ++ A      +D    + +I D+  +   + A    
Sbjct  557  VHMYADKITDSMAKAIDETNRRRAIQVAYNTEHGVDPTPLRKRIADITDSLAREDADTKS  616

Query  535  ---AQAAQRENQRQQFPVEHVQL  554
               +    R   +   PV H  L
Sbjct  617  LLESAGKGRSRGKAPVPVRHDGL  639


>sp|A2QA23|DBP6_ASPNC ATP-dependent RNA helicase dbp6 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=dbp6 PE=3 SV=1
Length=593

 Score = 79.8 bits (195),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 33/153 (22%), Positives = 60/153 (39%), Gaps = 13/153 (8%)

Query  329  ALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQ  388
              F        H  + G  + K   L ++L          + ++F  T+ S  +  L   
Sbjct  382  EQFTLPPTLEEHTVSVGDGSQKPLYLLRLLLSHIKL--ETKILVF--TKSSESASRLARL  437

Query  389  QQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIP  448
                  ++  R   +I +  SS S        ++ +  ++ G +++++AT  A  GLD+ 
Sbjct  438  LALLEPSLSDRIGTIIKSNKSSAS--------RKTLTAYRRGKISVIIATDRASRGLDLR  489

Query  449  HCNVVVRYGLLTNEISMVQARGR-ARADQSVYA  480
                VV Y +  +  + V   GR ARA Q   A
Sbjct  490  SLTHVVNYDVPASITTYVHRVGRTARAGQKGSA  522


 Score = 51.3 bits (121),  Expect = 2e-05, Method: Composition-based stats.
 Identities = 25/127 (20%), Positives = 44/127 (35%), Gaps = 14/127 (11%)

Query  20   IIIWLPTGAGKTRAAAYVAKRHLETVDGAKV--VVLVNRVHLVTQHGEEFR-RMLDGRWT  76
            + I   TG+GKT +        L+ +   ++  +++V    LV Q  E            
Sbjct  166  LCISAATGSGKTLSYVLPLVTALKPLPAPRLRGLIVVPTRELVKQAREACELCAAGSGLR  225

Query  77   VTTLSGDMGPRAGFGHLARCH--------DLLICTAELLQMALTSPEEEEHVELTVFSLI  128
            V +  G++  +         +        D+LICT   L   L   +      L     +
Sbjct  226  VASAVGNVAIKDEQRESLPGYVHRSEPNVDILICTPGRLVDHLRYTKG---FTLKNLEWL  282

Query  129  VVDECHH  135
            V+DE   
Sbjct  283  VIDEADR  289


>sp|Q75AE1|ROK1_EREGS ATP-dependent RNA helicase ROK1 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=ROK1 PE=3 SV=1
Length=569

 Score = 79.5 bits (194),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 58/156 (37%), Gaps = 18/156 (12%)

Query  313  EHVTKTQILCAERRLLALFDDRKNELAH-LATHGPENPKLEMLEKILQRQFSSSNSPRGI  371
            E + ++ +    R ++   +     +   L   G E  KL  + +++Q        P  I
Sbjct  322  EELAQSIMTDPVRVIIGHKEAANTNIEQKLVFCGNEEGKLVAIRQLIQE---GMFRPPVI  378

Query  372  IFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGT  431
            IF  +   A +L                  L             TQ  ++++I++F+ G 
Sbjct  379  IFLESITRAKAL--------------FHELLYDKLNVDVIHAERTQVQREKIIERFKSGD  424

Query  432  LNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
            L  L+ T V   G+D    N+V+ Y +  +  + V 
Sbjct  425  LWCLICTDVLARGIDFKGINLVINYDVPRSAQAYVH  460


 Score = 55.6 bits (132),  Expect = 1e-06, Method: Composition-based stats.
 Identities = 29/140 (21%), Positives = 57/140 (41%), Gaps = 18/140 (13%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-----KVVVLVNRVHLVT  61
            Q E I  +L+ ++I+   PTG+GKT  A  +        D A     K +++     L  
Sbjct  150  QCEAIPISLQNRDIVACAPTGSGKTL-AFLIPLLQQVISDKAVGTGVKGLIISPTKELAN  208

Query  62   QHGEEFRRML-------DGRWTVTTLSGDMGPRAGFGHLA-RCHDLLICTAELLQMALTS  113
            Q  +E  ++            +V  LS  +  +     ++ + +D++I T   L   + S
Sbjct  209  QIFDECSKLAQRIFLEKKRPLSVALLSKSLAAKLKNQIVSDKKYDIIISTPLRLIDIVKS  268

Query  114  PEEEEHVELTVFSLIVVDEC  133
                  ++L+    ++ DE 
Sbjct  269  ES----LDLSAVKYLIFDEA  284


>sp|Q03SM9|UVRB_LEVBA UvrABC system protein B OS=Levilactobacillus 
brevis (strain ATCC 367 / BCRC 12310 / CIP 105137 / JCM 
1170 / LMG 11437 / NCIMB 947 / NCTC 947) OX=387344 GN=uvrB 
PE=3 SV=1
Length=668

 Score = 79.8 bits (195),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 60/157 (38%), Gaps = 22/157 (14%)

Query  365  SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI  424
              + R  + T T++ A  L  +L+               +G   +   + +   ++ E++
Sbjct  448  EKNERTFVTTLTKKMAEDLTDYLKD--------------LGIKVAYLHSDIKTLERTEIM  493

Query  425  QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVY  479
            +  + G  ++LV  ++  EG+DIP  ++V          L NE S++Q  GRA  +    
Sbjct  494  RDLRLGKYDVLVGINLLREGIDIPEVSLVAILDADKEGFLRNERSLIQTIGRAARNSHGS  553

Query  480  AFVATEGSRELKRELINEALETLMEQAVAAVQKMDQA  516
              +  +    +   +     ET   + +      +  
Sbjct  554  VIMYAD---SVTDSMQAAMDETARRRQIQIAYNKEHG  587


>sp|Q7UA24|UVRB_PARMW UvrABC system protein B OS=Parasynechococcus 
marenigrum (strain WH8102) OX=84588 GN=uvrB PE=3 SV=1
Length=677

 Score = 79.8 bits (195),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 31/148 (21%), Positives = 62/148 (42%), Gaps = 23/148 (16%)

Query  363  SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE  422
             +S   R ++ T T++ A  L  +L + +      +R + L         + +   ++ E
Sbjct  440  RASKQQRVLVTTLTKRMAEDLTDYLAENE------VRVRYL--------HSEIHSIERIE  485

Query  423  VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQS  477
            +IQ  + G  ++LV  ++  EGLD+P  ++V          L  E S++Q  GRA     
Sbjct  486  IIQDLRLGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAARHVE  545

Query  478  VYAFVATEGSRELKRELINEALETLMEQ  505
              A +  +       E + +A+     +
Sbjct  546  GVALLYADN----MTESMAKAISETERR  569


>sp|A3N031|UVRB_ACTP2 UvrABC system protein B OS=Actinobacillus 
pleuropneumoniae serotype 5b (strain L20) OX=416269 GN=uvrB 
PE=3 SV=1
Length=673

 Score = 79.8 bits (195),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 32/179 (18%), Positives = 68/179 (38%), Gaps = 20/179 (11%)

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
              R +I T T++ A  L  +L +               G       + +   ++ E+I  
Sbjct  449  DERVLITTLTKKMAEDLTDYLDE--------------HGVRVRYLHSDIDTVERVEIIHD  494

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +E S++Q  GRA  + +  A 
Sbjct  495  LRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAI  554

Query  482  VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQ  539
            +  +  +  +++ +         +Q       +       K+ +L     T +  +  Q
Sbjct  555  LYGDRITNSMQKAITETERRREKQQKYNEEHGITPQALNKKVGELLDIGQTDKPKRGKQ  613


>sp|B7KC96|UVRB_GLOC7 UvrABC system protein B OS=Gloeothece citriformis 
(strain PCC 7424) OX=65393 GN=uvrB PE=3 SV=1
Length=665

 Score = 79.8 bits (195),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 60/157 (38%), Gaps = 22/157 (14%)

Query  365  SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI  424
                R +I T T++ A  L  + Q++              G       + ++  ++ E++
Sbjct  442  KRKERVLITTLTKRMAEDLTEYFQER--------------GVKVQYLHSEISSIERIEIL  487

Query  425  QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVY  479
            Q  ++G  ++L+  ++  EGLD+P  ++V          L  E S++Q  GRA       
Sbjct  488  QNLREGEFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAARHIQGQ  547

Query  480  AFVATEGSRELKRELINEALETLMEQAVAAVQKMDQA  516
            A +  +    L   +I    ET   + +         
Sbjct  548  AILYADN---LTDSMIKAMEETERRRNIQMAHNKRHG  581


 Score = 35.2 bits (79),  Expect = 2.7, Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 23/66 (35%), Gaps = 9/66 (14%)

Query  8   WEVIMPALEGKNIIIWLPTGAGKTR-AAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEE  66
              I      + ++    TG GKT   AA + K       G   +VL +   L  Q   E
Sbjct  24  VNSIEKGNRFQTLLGA--TGTGKTFTIAATIEKI------GKPTLVLAHNKTLAAQLCNE  75

Query  67  FRRMLD  72
            R+   
Sbjct  76  LRQFFP  81


>sp|P0CR09|SPB4_CRYNB ATP-dependent rRNA helicase SPB4 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=SPB4 PE=3 SV=1
Length=748

 Score = 79.8 bits (195),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 36/204 (18%), Positives = 68/204 (33%), Gaps = 24/204 (12%)

Query  316  TKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTR  375
             K      ERR      +      H         K   L ++L  + +     + I++  
Sbjct  268  RKDGEEPKERRTPMALQNTYLVCRHAE-------KTLQLIRLLLCESTKHERSKFIVYFS  320

Query  376  TRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN--  433
            T  +       L +   L    +          +S    +  + ++  +  F     +  
Sbjct  321  TCAAVDYFYRILSRLPSLSKFHL----------TSFHGELPPKIRETALSTFTSHPSSHL  370

Query  434  ---LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYA-FVATEGSR  488
               +L+ T VA  G+D    +VV++Y   T+  +     GR ARA +   A  +  +G  
Sbjct  371  SPAVLLCTDVAARGVDFLDIDVVIQYDAPTDPKTFSHRAGRTARAGRRGKAVVLLGKGRE  430

Query  489  ELKRELINEALETLMEQAVAAVQK  512
            E        A   LM++     Q+
Sbjct  431  EDYVGTFQSANAELMKRKRQKAQR  454


 Score = 52.5 bits (124),  Expect = 1e-05, Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 69/228 (30%), Gaps = 45/228 (20%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAK-----VVVLVNRVHLV  60
            Q   I  A++ ++ ++   TG+GKT A    V +R     +  K      +V+     L 
Sbjct  42   QAGTIPRAVKNQDCVVEAVTGSGKTLAFTIPVLERLSRREEPYKKGEIAAIVVAPTRELA  101

Query  61   TQHGEEFRRML-----------------------------------DGRWTVTTLSGDMG  85
            TQ    F   L                                      + +  L     
Sbjct  102  TQIHAVFHHFLSSLIPPESEEETGDVEAHAPPFASSSRSPSPQTPDKPLFPLPMLVTSGT  161

Query  86   PRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVI  145
            P       +    +LI T   L   L +P     V ++   ++V+DE         +   
Sbjct  162  PTPYETFQSTHPSILIGTPGRLAAFLLNPRGLAIVRVSELDVLVLDEADRLLSSPDHRRD  221

Query  146  MSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLD  193
            + + +    ++ +        +A+        +   + + +++  NL 
Sbjct  222  VERIMRHLPKQRRTHL----FSATMTDAVEEMIGLGLRNPVRIVVNLK  265


>sp|A7TT88|ROK1_VANPO ATP-dependent RNA helicase ROK1 OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=ROK1 PE=3 SV=1
Length=570

 Score = 79.5 bits (194),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 68/424 (16%), Positives = 149/424 (35%), Gaps = 61/424 (14%)

Query  143  NVIMSQYLELKLQRAQPLPQVL---GLTASPGTGGASKLDGAINHVLQLCANLDT----W  195
            N+I++ + E    + + +P  L    + A   TG    L   I  + Q+  + DT     
Sbjct  145  NLILNHFTEPTPIQCEAIPLALNNRDMLACAPTGSGKTLAFLIPLIQQVINDKDTQGLKG  204

Query  196  CIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRK-FG  254
             I+SP               + +  C + S   F D  + L   +       +L  K   
Sbjct  205  LIISPTKELA---------NQIFLECIKLSNRIFLDKKRPLQVALLSKSLSAKLRNKVIS  255

Query  255  TQMYE--------------QQVVKLSEAAALAGLQEQRVY-ALHLRRYNDALLIHDTVRA  299
             + Y+               + + LS+   L   +  +++    + + +D L        
Sbjct  256  DKKYDIIVSTPLRLIDVVKNEALDLSQVKHLIFDEADKLFDKTFVEQSDDILSSCSHSSL  315

Query  300  VDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH-LATHGPENPKLEMLEKIL  358
              ++ +     + E + K+ ++   R ++   +     +   L   G E  KL  +++++
Sbjct  316  RKSMFSATIPSNVEEIAKSIMMDPVRVIIGHKEAANTSIEQKLVFCGNEEGKLIAIKQLV  375

Query  359  QRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQR  418
            Q        P  IIF  +   A +L         +    +   ++            TQ 
Sbjct  376  QE---GEFKPPVIIFLESITRAKAL------YHEMMYDSLNVDVI--------HAERTQV  418

Query  419  DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARG---RARAD  475
             + ++I++F+ G L  L+ T V   G+D    N+V+ Y +     + V   G   R    
Sbjct  419  QRNKIIERFKSGDLWCLITTDVLARGVDFKGVNLVINYDVPRTAQAYVHRIGRTGRGGRS  478

Query  476  QSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQ--AEYQAKIRDLQQAALTKR  533
                 F   E S  +      + +  +M+Q+ + + +  +  ++   K ++L +      
Sbjct  479  GKAVTFYTKEDSIAI------KPIINVMKQSGSEISEWMEKVSKMTKKEKELVKKGRAHS  532

Query  534  AAQA  537
              + 
Sbjct  533  ERKQ  536


 Score = 56.0 bits (133),  Expect = 7e-07, Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 59/139 (42%), Gaps = 17/139 (12%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAY--VAKRHLETVD--GAKVVVLVNRVHLVTQ  62
            Q E I  AL  ++++   PTG+GKT  A    + ++ +   D  G K +++     L  Q
Sbjct  158  QCEAIPLALNNRDMLACAPTGSGKTL-AFLIPLIQQVINDKDTQGLKGLIISPTKELANQ  216

Query  63   HGEEFRRMLD-------GRWTVTTLSGDMGPRAGFGHLA-RCHDLLICTAELLQMALTSP  114
               E  ++ +           V  LS  +  +     ++ + +D+++ T   L   +   
Sbjct  217  IFLECIKLSNRIFLDKKRPLQVALLSKSLSAKLRNKVISDKKYDIIVSTPLRLIDVV---  273

Query  115  EEEEHVELTVFSLIVVDEC  133
             + E ++L+    ++ DE 
Sbjct  274  -KNEALDLSQVKHLIFDEA  291


>sp|Q3K051|UVRB_STRA1 UvrABC system protein B OS=Streptococcus 
agalactiae serotype Ia (strain ATCC 27591 / A909 / CDC SS700) 
OX=205921 GN=uvrB PE=3 SV=1
Length=663

 Score = 79.8 bits (195),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 75/184 (41%), Gaps = 21/184 (11%)

Query  349  PKLEMLEKILQRQ-FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG  407
            P +  ++ +L      +    R  I T T++ A  L  +L++              +G  
Sbjct  431  PSMGQMDDLLGEINLRTEKGERTFITTLTKRMAEDLTDYLKE--------------MGVK  476

Query  408  NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNE  462
                 + +   ++ E+I+  + G  ++L+  ++  EG+D+P  ++V          L NE
Sbjct  477  VKYMHSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNE  536

Query  463  ISMVQARGRARADQSVYAFVATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAK  521
              ++Q  GRA  + + +  +  +  +  ++R +   A    ++        +     + +
Sbjct  537  RGLIQTIGRAARNSNGHVIMYADKITDSMQRAMDETARRRRLQMDYNEKHGIVPQTIKKE  596

Query  522  IRDL  525
            IRDL
Sbjct  597  IRDL  600


>sp|Q9HMT9|UVRB_HALSA UvrABC system protein B OS=Halobacterium 
salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) OX=64091 
GN=uvrB PE=3 SV=1
Length=689

 Score = 79.8 bits (195),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 36/203 (18%), Positives = 71/203 (35%), Gaps = 22/203 (11%)

Query  351  LEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSS  410
            +E L   +      +   R ++ T T++ A  L  +L++               G     
Sbjct  444  VEDLMDRIDE--RVARDERVLVTTLTKRMAEDLTEYLEEA--------------GVAVEY  487

Query  411  QSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISM  465
                    ++ E+++  + G  ++LV  ++  EGLDIP  ++V          L +E S+
Sbjct  488  MHDETDTLERHELVRGLRLGEYDVLVGINLLREGLDIPEVSLVAILDADQQGFLRSETSL  547

Query  466  VQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD  524
            VQ  GR AR         A E +  ++  +        +++A            +  + D
Sbjct  548  VQTMGRAARNVNGEVVLYADETTDAMQAAIDETQRRRRIQRAFNEDHGTTPTTIEKAVGD  607

Query  525  LQQAALTKRAAQAAQRENQRQQF  547
            +         A  A      +Q 
Sbjct  608  MNLPGAETDTADVAGDAPSDEQE  630


>sp|A5E1N2|ROK1_LODEL ATP-dependent RNA helicase ROK1 OS=Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=ROK1 PE=3 SV=1
Length=553

 Score = 79.5 bits (194),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 54/308 (18%), Positives = 110/308 (36%), Gaps = 34/308 (11%)

Query  263  VKLSEAAALAGLQEQRVYALHLRRYNDALLIH-DTVRAVDALAALQDFYHREHVTKTQIL  321
            V LS+   L   +  +++        D LL H   V+   ++ +       E +  + + 
Sbjct  263  VDLSKVTQLVIDEADKLFDHGFAEQTDELLSHCTNVKIRKSMFSATIPSGVEEMAHSIMK  322

Query  322  CAERRLLALFDDRKNELAH-LATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSA  380
               R ++   +   N +   L   G E  KL  + +++Q        P  IIF ++   A
Sbjct  323  DPIRVIIGHKEAASNTIEQKLVFTGNEEGKLLAIRQMIQN---GEFKPPIIIFLQSITRA  379

Query  381  HSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSV  440
             +L                  +             T + + EVI++F++G + +L+ T V
Sbjct  380  KAL--------------FHELVYDKLNVDVIHAERTPKQRDEVIKRFKNGDIWVLITTDV  425

Query  441  AEEGLDIPHCNVVVRYGLLTNEISMVQARG---RARADQSVYAFVATEGSRELK------  491
               G+D    N+V+ Y +  +  + V   G   R         F   E  + +K      
Sbjct  426  LARGVDFKGVNMVINYDVPQSAQAYVHRIGRTGRGGRSGKAVTFFTKEDDKAVKPIINVM  485

Query  492  -----RELINEALETLMEQAVAAVQKMDQAEYQA-KIRDLQQAALTKRAAQAAQRENQRQ  545
                  + +++ +E L + +    + +   E +  KI  +      KR  +    E  ++
Sbjct  486  KQSGCTDGLSDWMEDLGKLSKREKRAVKTHEIERKKISTVPSVIKQKRKQRQNMIEASKR  545

Query  546  QFPVEHVQ  553
            +   E  Q
Sbjct  546  RKQAESEQ  553


 Score = 53.3 bits (126),  Expect = 6e-06, Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 56/138 (41%), Gaps = 19/138 (14%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAA-------YVAKRHLETVDGAKVVVLVNRVHL  59
            Q E I   L  +++I   PTG+GKT  A         V++  L+   G + +++     L
Sbjct  147  QCEAIPITLANRDLIACAPTGSGKTL-AFLIPLLQQLVSQNVLKNH-GIRGLIISPTNEL  204

Query  60   ---VTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLA-RCHDLLICTAELLQMALTSPE  115
               + Q  E   +       +  LS  +  +     +    +D+L+ T   L   +    
Sbjct  205  AVQIFQQLEIISK--GKGLNIAILSKQLAGKISNDVVKASKYDILVSTPLRLIDVV----  258

Query  116  EEEHVELTVFSLIVVDEC  133
            +   V+L+  + +V+DE 
Sbjct  259  KLGKVDLSKVTQLVIDEA  276


>sp|A6VQU2|RAPA_ACTSZ RNA polymerase-associated protein RapA OS=Actinobacillus 
succinogenes (strain ATCC 55618 / DSM 22257 
/ CCUG 43843 / 130Z) OX=339671 GN=rapA PE=3 SV=1
Length=966

 Score = 80.2 bits (196),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 81/491 (16%), Positives = 159/491 (32%), Gaps = 50/491 (10%)

Query  27   GAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHG----EEFRRMLDGRWTVTTLSG  82
            G GKT  A  + ++ +      +V+++V    L  Q        F               
Sbjct  179  GLGKTIEAGMILQQQIFAGRADRVLIVVP-ESLQHQWLVEMLRRFNLHFSLFDEERAEDF  237

Query  83   DMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHTHKDTVY  142
                     +     +L+IC+ + L   ++ P+       T F L++VDE HH       
Sbjct  238  AATDEQEECNPFDSENLIICSLDWL---ISRPKRRTQALQTQFDLLIVDEAHHLTWSPEA  294

Query  143  NVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQN  202
                    +L     + +P VL LTA+P      +  G  +H  +L   LD         
Sbjct  295  AN---PEYQLVESLTKQIPSVLLLTATP------EQLGQESHFARL-KLLDADRFYDYDA  344

Query  203  CCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQV  262
               + + +  +P          +++P         + I D LE  +L   F       + 
Sbjct  345  FVAEQRHY--RPVADAVQT-LLAENPLS---AAEKNAISDLLEEQDLEPLFKALDSRNEE  398

Query  263  VKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV--DALAALQDFYHREHVTKTQI  320
             K +    L      R     +   N    +    R +       L   Y        ++
Sbjct  399  EKATVRQELIDSLIDRHGTSRVLFRNTRQGVKGFPRRIYRQINLPLPKQYINAVRVVGRL  458

Query  321  LCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSA  380
                   L   +     +   A     +P++E L   L+       + + ++  R  Q+A
Sbjct  459  GKNPEDELFYPERLFQNMDQNAKWWDFDPRVEWLITFLKNH----RAEKVLVICRQAQTA  514

Query  381  HSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF--QDGTLNLLVAT  438
              L   L+ ++G     IR  +            ++  ++      F  Q+    +L+++
Sbjct  515  VQLEQALRAKEG-----IRCAVF--------HERLSIIERDRAAAYFADQENGAQVLLSS  561

Query  439  SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-----ARADQSVYAFVATEGSRELKRE  493
            ++  EG +      +V + L  N   + Q  GR      R D  +Y     +  + +  +
Sbjct  562  AIGSEGRNFQFACRLVLFNLPENPDLLEQCIGRLDRIGQRRDIRIYVPCFADSPQAVLAD  621

Query  494  LINEALETLME  504
              ++ L    E
Sbjct  622  WFHQGLNAFEE  632


>sp|A5GHU1|UVRB_SYNPW UvrABC system protein B OS=Synechococcus 
sp. (strain WH7803) OX=32051 GN=uvrB PE=3 SV=1
Length=678

 Score = 79.8 bits (195),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 56/129 (43%), Gaps = 19/129 (15%)

Query  363  SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE  422
             +S   R ++ T T++ A  L  +L + +      +R + L         + +   ++ E
Sbjct  440  RASKQQRVLVTTLTKRMAEDLTDYLAENE------VRVRYL--------HSEIHSIERIE  485

Query  423  VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQS  477
            +IQ  + G  ++LV  ++  EGLD+P  ++V          L  E S++Q  GRA     
Sbjct  486  IIQDLRLGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAARHVE  545

Query  478  VYAFVATEG  486
              A +  + 
Sbjct  546  GVALLYADN  554


>sp|B0U4J3|UVRB_XYLFM UvrABC system protein B OS=Xylella fastidiosa 
(strain M12) OX=405440 GN=uvrB PE=3 SV=1
Length=669

 Score = 79.8 bits (195),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 30/144 (21%), Positives = 58/144 (40%), Gaps = 19/144 (13%)

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
              R ++ T T++ A +L  +L +Q              G       + +   ++ E+I+ 
Sbjct  446  GDRVLVTTLTKRMAENLTEYLSEQ--------------GIRIRYLHSEIDTVERVEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +  S++Q  GRA       A 
Sbjct  492  LRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTSSLIQTIGRAARSVRGRAI  551

Query  482  VATEGSRELKRELINEALETLMEQ  505
            +  +      R  I+E      +Q
Sbjct  552  LYADKVTRSMRAAIDETERRRQKQ  575


>sp|Q5NFN4|UVRB_FRATT UvrABC system protein B OS=Francisella tularensis 
subsp. tularensis (strain SCHU S4 / Schu 4) OX=177416 
GN=uvrB PE=3 SV=1
Length=668

 Score = 79.8 bits (195),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 69/163 (42%), Gaps = 27/163 (17%)

Query  365  SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI  424
            +   R +I T T++   +L  +L +               G       + +   ++ ++I
Sbjct  442  AKEERVLITTLTKKMVENLTEYLSE--------------HGVNVRYLHSDIDTVERVQII  487

Query  425  QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVY  479
               + G  ++LV  ++  EGLD+P   V++ +       L +E S++Q  GR   +Q+  
Sbjct  488  HDLRHGVFDVLVGINLLREGLDMPEVGVLLIFDADKEGFLRSEKSLIQTIGRVARNQNGR  547

Query  480  AFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKI  522
            A +          +++ ++++  M++ +   +  D+   +  I
Sbjct  548  AILYA--------DVVTKSMQKAMDETLRRRKLQDEYNQKHNI  582


>sp|Q87AT6|UVRB_XYLFT UvrABC system protein B OS=Xylella fastidiosa 
(strain Temecula1 / ATCC 700964) OX=183190 GN=uvrB PE=3 
SV=1
Length=669

 Score = 79.8 bits (195),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 30/144 (21%), Positives = 58/144 (40%), Gaps = 19/144 (13%)

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
              R ++ T T++ A +L  +L +Q              G       + +   ++ E+I+ 
Sbjct  446  GDRVLVTTLTKRMAENLTEYLSEQ--------------GIRIRYLHSEIDTVERVEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +  S++Q  GRA       A 
Sbjct  492  LRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTSSLIQTIGRAARSVRGRAI  551

Query  482  VATEGSRELKRELINEALETLMEQ  505
            +  +      R  I+E      +Q
Sbjct  552  LYADKVTRSMRAAIDETERRRQKQ  575


>sp|B2I8F9|UVRB_XYLF2 UvrABC system protein B OS=Xylella fastidiosa 
(strain M23) OX=405441 GN=uvrB PE=3 SV=1
Length=669

 Score = 79.8 bits (195),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 30/144 (21%), Positives = 58/144 (40%), Gaps = 19/144 (13%)

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
              R ++ T T++ A +L  +L +Q              G       + +   ++ E+I+ 
Sbjct  446  GDRVLVTTLTKRMAENLTEYLSEQ--------------GIRIRYLHSEIDTVERVEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +  S++Q  GRA       A 
Sbjct  492  LRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTSSLIQTIGRAARSVRGRAI  551

Query  482  VATEGSRELKRELINEALETLMEQ  505
            +  +      R  I+E      +Q
Sbjct  552  LYADKVTRSMRAAIDETERRRQKQ  575


>sp|A5UNK6|UVRB_METS3 UvrABC system protein B OS=Methanobrevibacter 
smithii (strain ATCC 35061 / DSM 861 / OCM 144 / PS) OX=420247 
GN=uvrB PE=3 SV=1
Length=655

 Score = 79.8 bits (195),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 85/548 (16%), Positives = 171/548 (31%), Gaps = 121/548 (22%)

Query  26   TGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDG------------  73
            TG+GKT          +E V    +V+  N   L  Q  EEF+                 
Sbjct  40   TGSGKTFT----MANVIEKVQKPTLVISHN-KTLAAQLYEEFKEFFPDNAVEYFVSYYDY  94

Query  74   -------RWTVTTLSGDMGPRAGFG--------HLARCHDLLICTAELLQMALTSPEEEE  118
                     T T +  +                 L    D+++ ++      + SPE+  
Sbjct  95   YQPEAYVPRTDTFIDKESSVNEEIDIMRHSATQSLLSRDDVIVVSSVSCIYGIGSPEDYG  154

Query  119  HVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLG--LTASPGTGGAS  176
                  F + V D    +  D +  ++  QY    ++ A+   +V G  +  +P  G   
Sbjct  155  EFA---FGIAVGDNYDRS--DIIRKLVFMQYERNDIEFARGHFRVRGDVIEINPVHGTPP  209

Query  177  KLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKL  236
                     +   + +D             L+ +   P K + +     QD     ++ +
Sbjct  210  VRVELFGDEIDAISLIDKVT----GKKTESLKRYMIFPAKHFVV----GQDKMDTAIRNI  261

Query  237  MDQIHDHLEMPELSRKF-GTQMYEQQVVKLSEAAALAGLQ----------EQRVYA---L  282
             D++ + L    LS K    Q  EQ+     E     G              R +     
Sbjct  262  SDELDERLNEFNLSNKLLEAQRLEQRTRFDIEMLQEMGYCPGVENYSMHLSGRKWGEKPY  321

Query  283  HLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLA  342
             L +Y     +     +   L  ++  Y+ +   K  ++    RL +  ++R        
Sbjct  322  SLLKYFPEDYLTIIDESHVTLPQIRGMYNGDRARKETLVEHGFRLPSAKENRPLRFDEFE  381

Query  343  TH---------------------------------------GPENPKLEMLEKILQRQFS  363
            +                                         P   ++E L   +++   
Sbjct  382  SSINQIIYVSATPGAYELSRSSNIVEQIIRPTGLVDPEVIIRPVKGQVEDLLGEVKK--R  439

Query  364  SSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEV  423
            +    R ++ T T++ A  L  +  +              IG       + +   ++ ++
Sbjct  440  AKKDERVLVTTLTKKMAEDLTDYYAK--------------IGVKVRYMHSEIDTLERIDI  485

Query  424  IQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSV  478
            +   + GT ++LV  ++  EGLD+P  ++V          L NE S++Q  GRA  + + 
Sbjct  486  VDDLRRGTFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNETSLIQTIGRAARNING  545

Query  479  YAFVATEG  486
               +  + 
Sbjct  546  QVIMYVDE  553


>sp|Q9FNQ1|DEXHE_ARATH DExH-box ATP-dependent RNA helicase DExH14 
OS=Arabidopsis thaliana OX=3702 GN=BRR2C PE=2 SV=1
Length=2157

 Score = 80.2 bits (196),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 34/164 (21%), Positives = 67/164 (41%), Gaps = 19/164 (12%)

Query  18   KNIIIWLPTGAGKTRAAAYVAKRHLET--------VDGAKVVVLVNRVHLVTQHGEEF-R  68
            +NI++  PTGAGKT  A       ++          +  K+V +     L  +    F R
Sbjct  524  ENILVCAPTGAGKTNIAMISVLHEIKQHFRDGYLHKNEFKIVYVAPMKALAAEVTSAFSR  583

Query  69   RMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLI  128
            R+      V  L+GDM              +++ T E     +T    +  + + +  L+
Sbjct  584  RLAPLNMVVKELTGDMQLTKTE---LEETQMIVTTPEK-WDVITRKSSDMSMSM-LVKLL  638

Query  129  VVDECHHTHKDTVYNVIMSQYLELKLQ---RAQPLPQVLGLTAS  169
            ++DE H  + D     ++   +   L+     Q + +++GL+A+
Sbjct  639  IIDEVHLLNDDRGA--VIEALVARTLRQVESTQTMIRIVGLSAT  680


 Score = 72.1 bits (175),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 29/154 (19%), Positives = 60/154 (39%), Gaps = 8/154 (5%)

Query  17    GKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRML--DGR  74
               N+++  PTG+GKT +A     R   T    KVV +     +V +   ++++ L     
Sbjct  1371  DNNVLVGAPTGSGKTISAELAMLRLFSTQPDMKVVYIAPLKAIVRERMNDWKKHLVAPLG  1430

Query  75    WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECH  134
               +  ++GD  P           D++I T E     ++         +    L+++DE H
Sbjct  1431  KEMVEMTGDYTPDLV---ALLSADIIISTPEK-WDGISRNW-HTRSYVKKVGLVILDEIH  1485

Query  135   HTHKD-TVYNVIMSQYLELKLQRAQPLPQVLGLT  167
                 D      ++   +     + +   + +GL+
Sbjct  1486  LLGADRGPILEVIVSRMRYISSQTERSVRFVGLS  1519


 Score = 43.2 bits (100),  Expect = 0.010, Method: Composition-based stats.
 Identities = 34/192 (18%), Positives = 69/192 (36%), Gaps = 36/192 (19%)

Query  363  SSSNSPRGIIFTRTRQ----SAHSLLLWLQQQQGLQ--TVDIRAQL--------------  402
            S     + +IF  +R+    +A  L+   +Q + L   T +   Q               
Sbjct  741  SIKQGHQAMIFVHSRKDTSKTAEKLVDLARQYETLDLFTNETHPQFQLMKKDVMKSRNKD  800

Query  403  ---LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVR----  455
                  AG       M + D+    + F DG L +LV T+    G+++P   VV++    
Sbjct  801  LVKFFEAGFGIHHAGMLRSDRTLTERLFSDGLLKVLVCTATLAWGVNLPAHTVVIKGTQL  860

Query  456  YGL---------LTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQA  506
            Y           + + + +    GR + D+S    + T   +      +  +   +  Q 
Sbjct  861  YDAKAGGWKDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHDKLAYYLRLLTSQLPIESQF  920

Query  507  VAAVQKMDQAEY  518
            +++++    AE 
Sbjct  921  ISSLKDNLNAEV  932


>sp|A9BD93|UVRB_PROM4 UvrABC system protein B OS=Prochlorococcus 
marinus (strain MIT 9211) OX=93059 GN=uvrB PE=3 SV=1
Length=679

 Score = 79.8 bits (195),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 32/156 (21%), Positives = 63/156 (40%), Gaps = 22/156 (14%)

Query  366  NSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQ  425
               R +I T T++ A  L  +L + +      ++ + L         + +   ++ E+IQ
Sbjct  443  KKERVLITTLTKRMAEDLSDYLSENR------VKVRYL--------HSEIHSIERIEIIQ  488

Query  426  KFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYA  480
              + G  ++LV  ++  EGLD+P  ++VV         L  + S++Q  GRA      +A
Sbjct  489  DLRVGEYDVLVGVNLLREGLDLPEVSLVVILDADKEGFLRAKRSLIQTIGRAARHVDGFA  548

Query  481  FVATEGSRELKRELINEALETLMEQAVAAVQKMDQA  516
             +  +    L   +     ET   +A+         
Sbjct  549  LLYADN---LTESMSTAIQETERRRAIQQAYNQKHG  581


>sp|A1JJG0|RAPA_YERE8 RNA polymerase-associated protein RapA OS=Yersinia 
enterocolitica serotype O:8 / biotype 1B (strain 
NCTC 13174 / 8081) OX=393305 GN=rapA PE=3 SV=1
Length=968

 Score = 79.8 bits (195),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 72/456 (16%), Positives = 155/456 (34%), Gaps = 50/456 (11%)

Query  27   GAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGP  86
            G GKT  A  +  + L +    +++++V    L  Q   E  R  + R+++   S     
Sbjct  180  GLGKTIEAGMIIHQQLLSGRAERILIVVP-ESLQHQWLVEMLRRFNLRFSLFDDSRYSEA  238

Query  87   RAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHT--HKDTVYNV  144
                 +      ++IC+   L     + +  E +    + L+VVDE HH    ++     
Sbjct  239  LLDSTNPFETEQMVICS---LDFVRRNKQRLEQLADASWDLLVVDEAHHLAWSEEAPSRE  295

Query  145  IMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCC  204
                  ++  Q A+ +P VL LTA+P      +  G  +H  +L   LD       +   
Sbjct  296  -----YQVIEQLAEHIPGVLLLTATP------EQLGQQSHFARL-RLLDPDRFHDYEEFI  343

Query  205  PQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVK  264
             +  +   +P           +    D L  L+ ++ +  ++  L +   +Q  + +  +
Sbjct  344  NE--QQKYRPIADAVTLLLGGERLTDDKLN-LLGELINEQDIEPLLKAANSQTEDSEAAR  400

Query  265  LSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAE  324
                  L              R       H  +  +      Q   ++  +  + I+ A+
Sbjct  401  QELVTMLMDRHGTSRILFRNTRNGVKGFPHRVLHQIKLPLPTQ---YQTAIKVSGIMGAK  457

Query  325  RRLLALFDDRKNELAHLATHGPEN-------PKLEMLEKILQRQFSSSNSPRGIIFTRTR  377
            + L A   D             EN       P++E L   L     ++ + + ++     
Sbjct  458  KSLEARAKDMLYPEQIYQEFEGENATWWNFDPRVEWLLNYLI----ANRNEKVLVICAQA  513

Query  378  QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGT--LNLL  435
             +A  L   L++++ ++                    ++  ++      F        +L
Sbjct  514  ATALQLEQVLREREAIRAAVFH-------------EGLSLIERDRAAAYFASEEDGAQVL  560

Query  436  VATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
            + + +  EG +      +V + L  N   + Q  GR
Sbjct  561  LCSEIGSEGRNFQFACQLVMFDLPFNPDLLEQRIGR  596


>sp|Q8DYL6|UVRB_STRA5 UvrABC system protein B OS=Streptococcus 
agalactiae serotype V (strain ATCC BAA-611 / 2603 V/R) OX=208435 
GN=uvrB PE=3 SV=1
Length=663

 Score = 79.5 bits (194),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 75/184 (41%), Gaps = 21/184 (11%)

Query  349  PKLEMLEKILQRQ-FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG  407
            P +  ++ +L      +    R  I T T++ A  L  +L++              +G  
Sbjct  431  PSMGQMDDLLGEINLRTEKGERTFITTLTKRMAEDLTDYLKE--------------MGVK  476

Query  408  NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNE  462
                 + +   ++ E+I+  + G  ++L+  ++  EG+D+P  ++V          L NE
Sbjct  477  VKYMHSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNE  536

Query  463  ISMVQARGRARADQSVYAFVATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAK  521
              ++Q  GRA  + + +  +  +  +  ++R +   A    ++        +     + +
Sbjct  537  RGLIQTIGRAARNSNGHVIMYADKITDSMQRAMDETARRRRLQMDYNEKHGIVPQTIKKE  596

Query  522  IRDL  525
            IRDL
Sbjct  597  IRDL  600


>sp|Q8E471|UVRB_STRA3 UvrABC system protein B OS=Streptococcus 
agalactiae serotype III (strain NEM316) OX=211110 GN=uvrB PE=3 
SV=1
Length=663

 Score = 79.5 bits (194),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 75/184 (41%), Gaps = 21/184 (11%)

Query  349  PKLEMLEKILQRQ-FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG  407
            P +  ++ +L      +    R  I T T++ A  L  +L++              +G  
Sbjct  431  PSMGQMDDLLGEINLRTEKGERTFITTLTKRMAEDLTDYLKE--------------MGVK  476

Query  408  NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNE  462
                 + +   ++ E+I+  + G  ++L+  ++  EG+D+P  ++V          L NE
Sbjct  477  VKYMHSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNE  536

Query  463  ISMVQARGRARADQSVYAFVATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAK  521
              ++Q  GRA  + + +  +  +  +  ++R +   A    ++        +     + +
Sbjct  537  RGLIQTIGRAARNSNGHVIMYADKITDSMQRAMDETARRRRLQMDYNEKHGIVPQTIKKE  596

Query  522  IRDL  525
            IRDL
Sbjct  597  IRDL  600


>sp|Q9PER1|UVRB_XYLFA UvrABC system protein B OS=Xylella fastidiosa 
(strain 9a5c) OX=160492 GN=uvrB PE=3 SV=1
Length=669

 Score = 79.5 bits (194),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 30/144 (21%), Positives = 58/144 (40%), Gaps = 19/144 (13%)

Query  367  SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK  426
              R ++ T T++ A +L  +L +Q              G       + +   ++ E+I+ 
Sbjct  446  GDRVLVTTLTKRMAENLTEYLSEQ--------------GIRIRYLHSEIDTVERVEIIRD  491

Query  427  FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF  481
             + G  ++LV  ++  EGLD+P  ++V          L +  S++Q  GRA       A 
Sbjct  492  LRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTSSLIQTIGRAARSVRGRAI  551

Query  482  VATEGSRELKRELINEALETLMEQ  505
            +  +      R  I+E      +Q
Sbjct  552  LYADKVTRSMRAAIDETERRRQKQ  575


>sp|Q7UZL3|UVRB_PROMP UvrABC system protein B OS=Prochlorococcus 
marinus subsp. pastoris (strain CCMP1986 / NIES-2087 / MED4) 
OX=59919 GN=uvrB PE=3 SV=1
Length=679

 Score = 79.5 bits (194),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 60/140 (43%), Gaps = 19/140 (14%)

Query  363  SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE  422
             +  + R ++ T T++ A  L  +L   +      +R + L         + +   ++ E
Sbjct  440  RAKKNQRVLVTTLTKRMAEDLTDFLSDNK------VRVRYL--------HSEIHSIERIE  485

Query  423  VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQS  477
            +IQ  + G  ++LV  ++  EGLD+P  ++V          L  E S++Q  GRA     
Sbjct  486  IIQDLRLGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAARHVE  545

Query  478  VYAFVATEGSRELKRELINE  497
              A +  +   E  +  I+E
Sbjct  546  GVALLYADNFTESMKRAISE  565


>sp|Q6CSW1|ROK1_KLULA ATP-dependent RNA helicase ROK1 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 
1267 / NRRL Y-1140 / WM37) OX=284590 GN=ROK1 PE=3 SV=1
Length=579

 Score = 79.5 bits (194),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 25/115 (22%), Positives = 40/115 (35%), Gaps = 14/115 (12%)

Query  353  MLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQS  412
             L  I Q        P  IIF  +   A +L                  L          
Sbjct  369  KLIAIRQLVLEGEFKPPVIIFLESITRAKAL--------------FHELLYDKLNVDVIH  414

Query  413  THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
               TQ  + ++I++F+ G L  L+ T V   G+D    N+V+ Y +  +  + V 
Sbjct  415  AERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVH  469


 Score = 47.1 bits (110),  Expect = 5e-04, Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 53/139 (38%), Gaps = 17/139 (12%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAY--VAKRHL--ETVDGAKVVVLVNRVHLVTQ  62
            Q E I   L  +++I   PTG+GKT  A    + ++ +  +T  G K +++     L  Q
Sbjct  160  QSESIPILLHERDMIACAPTGSGKTL-AFLIPLLQQIINDKTTVGLKGLIISPTKELANQ  218

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLA--------RCHDLLICTAELLQMALTSP  114
               E  ++ +  +        +   +                +D++I T   L   +   
Sbjct  219  IFIECSKLANKIYLDKKRPLQVALLSKSLSSKLKNKVISEDKYDIIISTPLRLITVV---  275

Query  115  EEEEHVELTVFSLIVVDEC  133
             +EE + L     ++ DE 
Sbjct  276  -QEEALNLGKVKHLIFDEA  293


>sp|P34640|DDX55_CAEEL Probable ATP-dependent RNA helicase DDX55 
homolog OS=Caenorhabditis elegans OX=6239 GN=ZK512.2 PE=3 
SV=2
Length=578

 Score = 79.5 bits (194),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 57/390 (15%), Positives = 128/390 (33%), Gaps = 30/390 (8%)

Query  197  IMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQ  256
            I + +     +      P ++          PF + L   ++ +    ++ +  + F  +
Sbjct  71   IQNAKLQPADIGALILSPSRELCSQIVSVIQPFAEKLNLTVETVTGGQKVDKNIKMFKNK  130

Query  257  MYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVT  316
                 V   +       +Q ++       R    L+I +  R         +    +H+ 
Sbjct  131  NVNILVA--TPGRLFQIIQHEKTLIARKMRTLQLLVIDEADR-------FNEIQFEDHMR  181

Query  317  KTQILCAERRLLALFDD-RKNELAHLATHGPENPKLEMLEKI--------LQRQF----S  363
            +      ++R   LF   +  E   L   G  N K   + +         L+  +    +
Sbjct  182  EILSCIPKQRRTGLFSATQVKEEDDLMVFGLRNAKQVKVAQERNSAAPSTLKNYYVECRA  241

Query  364  SSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEV  423
               +   + F R R     L+ +           I  + L      +     +   +   
Sbjct  242  DEKTSVCLEFIRQRTDKKILIFFPSCNSVRYFYKIFERCLGKRPLFAVHGKCSNPHRASQ  301

Query  424  IQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFV  482
            I+ F D T  ++++T V   G+DI   + V+++ L  +    V   GR AR  +   A +
Sbjct  302  IKAFSDSTNGVMISTDVMARGIDISDIDWVIQFDLPKHSSWFVHRAGRTARCGREGNALI  361

Query  483  ATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQREN  542
                 +      ++   +  +++         ++E      +L+Q  +  + +  A  E 
Sbjct  362  LIASEQLAYVNFLDNHEKVKLDEIKVPTNNSRKSE------ELRQKMIKIQVSDRAILEA  415

Query  543  QRQQFPVEHVQLLCINCMVAVGHGSDLRKV  572
              + F V HV+    +    +    DL  V
Sbjct  416  GTRAF-VSHVESYAKHDCHLICSLDDLNVV  444


 Score = 61.0 bits (146),  Expect = 2e-08, Method: Composition-based stats.
 Identities = 27/193 (14%), Positives = 65/193 (34%), Gaps = 15/193 (8%)

Query  25   PTGAGKTRAAAYVAKRHLETVDGAKV----VVLVNRVHLVTQHGEEFRRMLDGRWTV--T  78
            PTG+GKT A      R ++           ++L     L +Q     +   +       T
Sbjct  54   PTGSGKTLAFVLPMMRMIQNAKLQPADIGALILSPSRELCSQIVSVIQPFAEKLNLTVET  113

Query  79   TLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHTHK  138
               G    +       +  ++L+ T   L   +   +     ++    L+V+DE      
Sbjct  114  VTGGQKVDKNIKMFKNKNVNILVATPGRLFQIIQHEKTLIARKMRTLQLLVIDEADR---  170

Query  139  DTVYNVIMSQYLELKLQRAQPLPQVLGL-TASPGTGGASKLDGAINH--VLQLCANLDTW  195
               +N I  +    ++    P  +  GL +A+        +   + +   +++    ++ 
Sbjct  171  ---FNEIQFEDHMREILSCIPKQRRTGLFSATQVKEEDDLMVFGLRNAKQVKVAQERNSA  227

Query  196  CIMSPQNCCPQLQ  208
               + +N   + +
Sbjct  228  APSTLKNYYVECR  240


>sp|Q5N3H1|UVRB_SYNP6 UvrABC system protein B OS=Synechococcus 
sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 
GN=uvrB PE=3 SV=1
Length=666

 Score = 79.5 bits (194),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 89/225 (40%), Gaps = 34/225 (15%)

Query  319  QILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQ  378
            +I  +E +++         +       P   +++ L   +Q++       R +I T T++
Sbjct  398  EIERSEEQIVEQVIRPTGVVDPEVFVRPTEGQVDDLLAEIQQRVRRQE--RALITTLTKR  455

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT  438
             A  L  +L  +              G       + +   ++ E++Q  ++G  ++L+  
Sbjct  456  MAEDLTDYLSDR--------------GVKVRYLHSEINSIERIEILQDLRNGDFDVLIGV  501

Query  439  SVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAFVATEGSRELKRE  493
            ++  EGLD+P  ++V          L  E S++Q  GRA    +  A +  +        
Sbjct  502  NLLREGLDLPEVSLVAILDADKEGFLRTERSLIQTIGRAARHINGQAILYADR-------  554

Query  494  LINEALETLMEQAVAAVQKMDQAEYQ-AKIRDLQQAALTKRAAQA  537
                 +   ME+A++  ++  + +    +  ++    + KR++ A
Sbjct  555  -----MTESMEKAISETERRRRIQLDYNQRHNITPQPIIKRSSNA  594


>sp|Q31QS4|UVRB_SYNE7 UvrABC system protein B OS=Synechococcus 
elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805) OX=1140 
GN=uvrB PE=3 SV=1
Length=666

 Score = 79.5 bits (194),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 89/225 (40%), Gaps = 34/225 (15%)

Query  319  QILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQ  378
            +I  +E +++         +       P   +++ L   +Q++       R +I T T++
Sbjct  398  EIERSEEQIVEQVIRPTGVVDPEVFVRPTEGQVDDLLAEIQQRVRRQE--RALITTLTKR  455

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT  438
             A  L  +L  +              G       + +   ++ E++Q  ++G  ++L+  
Sbjct  456  MAEDLTDYLSDR--------------GVKVRYLHSEINSIERIEILQDLRNGDFDVLIGV  501

Query  439  SVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAFVATEGSRELKRE  493
            ++  EGLD+P  ++V          L  E S++Q  GRA    +  A +  +        
Sbjct  502  NLLREGLDLPEVSLVAILDADKEGFLRTERSLIQTIGRAARHINGQAILYADR-------  554

Query  494  LINEALETLMEQAVAAVQKMDQAEYQ-AKIRDLQQAALTKRAAQA  537
                 +   ME+A++  ++  + +    +  ++    + KR++ A
Sbjct  555  -----MTESMEKAISETERRRRIQLDYNQRHNITPQPIIKRSSNA  594


>sp|B2VGQ6|RAPA_ERWT9 RNA polymerase-associated protein RapA OS=Erwinia 
tasmaniensis (strain DSM 17950 / CFBP 7177 / CIP 109463 
/ NCPPB 4357 / Et1/99) OX=465817 GN=rapA PE=3 SV=1
Length=968

 Score = 79.8 bits (195),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 74/475 (16%), Positives = 158/475 (33%), Gaps = 42/475 (9%)

Query  5    SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ  62
             +Q  +           +++    G GKT  A  +  + L+     +V+++V    L  Q
Sbjct  156  PHQLHIAHDVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLQAGRAERVLIVVP-ETLQHQ  214

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
               E  R  + R+ +         +    +      ++IC+   L     + +  E +  
Sbjct  215  WLVEMLRRFNLRFALFDDDRYAQAQLDSDNPFDTEQMIICS---LDFVRRNKQRLEKLAD  271

Query  123  TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG  180
              + L+VVDE HH    +D           ++  Q A+ +P +L LTA+P      +  G
Sbjct  272  AEWDLMVVDEAHHLVWSEDAPSRE-----YQVIEQLAEQVPGILLLTATP------EQLG  320

Query  181  AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI  240
              +H  +L   L             + Q+H   P           Q    D L  L++ +
Sbjct  321  MESHFARL--RLLDPDRFHDFAQFVEEQKHFS-PIADAVTLLLADQKIGNDELN-LLNDL  376

Query  241  HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQ-EQRVYALHLRRYNDALLIHDTVRA  299
                ++  L +   +    +   +    + L       RV   + R         +  + 
Sbjct  377  MGEQDIEPLLQTANSDREGKLAARQELISMLMDRHGTSRVLFRNTRNGVKGFPKRELHQI  436

Query  300  VDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG---PENPKLEMLEK  356
               L        +     +    A+ R   +    +         G     +P++E    
Sbjct  437  RLPLPTQYQTAIKVSGIMSARKTADERAQDMLYPEQIYQEFEGDSGTWWNFDPRVE----  492

Query  357  ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT  416
             L    +S+   + ++      +A  L   L++++G++       L I   + + +   +
Sbjct  493  WLMGYLTSNRDKKVLVICAKAATALQLEQVLREREGIRAAVFHEGLSIIERDRAAAWFAS  552

Query  417  QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
            + D              +L+ + +  EG +    + +V + L  N   + Q  GR
Sbjct  553  EED-----------GAQVLLCSEIGSEGRNFQFASQMVMFDLPFNPDLLEQRIGR  596


>sp|C6DEY0|RAPA_PECCP RNA polymerase-associated protein RapA OS=Pectobacterium 
carotovorum subsp. carotovorum (strain PC1) 
OX=561230 GN=rapA PE=3 SV=1
Length=967

 Score = 79.8 bits (195),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 70/477 (15%), Positives = 152/477 (32%), Gaps = 46/477 (10%)

Query  5    SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ  62
             +Q  +     +     +++    G GKT  A  +  + L     ++V+++V    L  Q
Sbjct  155  PHQLHIAHEVGQRHAPRVLLADEVGLGKTIEAGMIIHQQLLAGRASRVLIIVP-ETLQHQ  213

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
               E  R  +  +++         +    +      L+IC+   L     + +    +  
Sbjct  214  WLVEMLRRFNLLFSLFDDERYAEAKLDSSNPFETEQLVICS---LGFVQRNAQRFAQLVN  270

Query  123  TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG  180
              + L+VVDE HH    +++          +     A+  P VL LTA+P      +  G
Sbjct  271  ADWDLLVVDEAHHLVWSEESPSAE-----YQAVETLARATPAVLLLTATP------EQLG  319

Query  181  AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI  240
              +H  +L   LD       Q    +  +   +P           +      L  L D +
Sbjct  320  QQSHFARL-RLLDPNRFHDYQEFLAE--QQQYRPVADAVTLLLAGEKAQTAELNALSDLL  376

Query  241  HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV  300
                ++  L +   +   + Q  +    A L              R          +  +
Sbjct  377  -GEQDIEPLLKAINSDSDDNQKARQELIAMLMDRHGTSRVLFRNTRQGVKGFPQRILHQI  435

Query  301  DALAALQDFYHREHVTKTQILCAE------RRLLALFDDRKNELAHLATHGPENPKLEML  354
                 L   Y         +   +      R +L      +      AT    +P++E  
Sbjct  436  RL--PLPSQYQTAIKVSGIMNANKTLEVRARDMLYPEQIYQQLEGDDATWWNFDPRVE--  491

Query  355  EKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH  414
               L    +++   + ++      +A  L   L+ ++ ++       L I   + + +  
Sbjct  492  --WLLNYLTANRDEKVLVICAQAATALQLEQVLRTREAIRAAVFHEGLSILERDRAAAYF  549

Query  415  MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
             ++ +              +L+ + +  EG +    + +V + L  N   + Q  GR
Sbjct  550  ASEEE-----------GAQVLICSEIGSEGRNFQFASHLVMFDLPFNPDLLEQRIGR  595


>sp|A2QE29|SPB4_ASPNC ATP-dependent rRNA helicase spb4 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=spb4 PE=3 SV=2
Length=642

 Score = 79.5 bits (194),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 54/140 (39%), Gaps = 15/140 (11%)

Query  346  PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
            P   K   ++ IL          + I+F  T      L   L     +   D +   L G
Sbjct  277  PPTHKFPAIKHILYSL--EPAPQKTIMFVSTCSGVDYLSAIL---PSIIGDDFQLIPLHG  331

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLN-LLVATSVAEEGLDIPHCNVVVRYGLLTNEIS  464
               ++         +++   +F +     +L+ T VA  GLDIP  +VV++    ++  +
Sbjct  332  KHQANV--------REKNFNRFVNSHTPAILLTTDVASRGLDIPSVDVVIQIDPPSDPKT  383

Query  465  MVQARGRA-RADQSVYAFVA  483
             +   GRA RA +   + V 
Sbjct  384  FIHRCGRAGRAGRKGLSVVL  403


 Score = 42.9 bits (99),  Expect = 0.011, Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 52/154 (34%), Gaps = 39/154 (25%)

Query  18   KNIIIWLPTGAGKTRAAAY--VAKRHLETVDGAK-----VVVLVNRVHLVTQHGEEFRRM  70
            K++++   TG+GKT  +    V ++ L   +  K      +++     L +Q       +
Sbjct  52   KDVVVEAVTGSGKTL-SFLIPVVEKLLRLEEPLKKHHVGAIIISPTRELASQIYNVLTSL  110

Query  71   LDGRWTVTTL-----SGDMGPRAGFGH------------------------LARCHDLLI  101
            L       +        D  PR  F                          L R  +LL+
Sbjct  111  LAFHPPSASTLKPSDDDDDAPRQKFPSSTLKVVPQLLLGGSTTPAEDLSTFLKRSPNLLV  170

Query  102  CTAELLQMALTSPEEEEHVELTVFSLIVVDECHH  135
             T   L   L+SP    H   + F ++V+DE   
Sbjct  171  STPGRLLELLSSP--HVHCPQSSFEMLVMDEADR  202


>sp|A7HKC0|UVRB_FERNB UvrABC system protein B OS=Fervidobacterium 
nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) OX=381764 
GN=uvrB PE=3 SV=1
Length=661

 Score = 79.5 bits (194),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 90/623 (14%), Positives = 198/623 (32%), Gaps = 130/623 (21%)

Query  8    WEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEF  67
               +      + ++    TG+GKT   A V K          V+++     L  Q   EF
Sbjct  23   VNGLNKGYRFQTLLGV--TGSGKTFTMANVIKEV-----NRPVLIISPNKTLAAQLYSEF  75

Query  68   RRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVE-LTVFS  126
            +                             DL I  +  +   +           +T   
Sbjct  76   KAFFPN--NKVEFFISYYDYYQPEAYVPTKDLYIEKSADINDVIARMRMSAIKSIMTRRD  133

Query  127  LIVVDECHHTHKDTVY-------------------NVIMSQYLELKLQRAQPLPQVLGLT  167
            +IVV          +Y                    + +S++++  ++      + +GLT
Sbjct  134  VIVV-----ASVSAIYACGDPRDFDTLNIKLEVGQRINLSEFVKKLVKIGYERKEDIGLT  188

Query  168  ASPGTGGA------SKLDGAINHVLQLCANLDTWCIMSP--QNCCPQLQEHSQQPCKQYN  219
             S    G       S  D  I  +      +D         ++   +L   +  P K+Y 
Sbjct  189  GSFRLRGDTLEIFPSYQDEGIR-IELFGDEIDRMYTFDRMNRDVIERLDRLTIYPTKEYV  247

Query  220  LCHRRSQDPFGDL---LKKLMDQIHDHLEMPELSRKFGTQMYEQQVVK-------LSEAA  269
                + +     +   L + + ++    +  E  R +   M + +++        +   +
Sbjct  248  TTEEKIERAVKSIRAELDEQVKKLRSEGKELEAQRLWQRTMNDIELLSTLGYCTGIENYS  307

Query  270  ALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTK-------TQILC  322
                 ++       L  Y D   I     +   +  L+  YH E   K        ++ C
Sbjct  308  RHFDGRQPGEPPYSLLDYYDEDFIVFIDESHITIPQLRAMYHGEMSRKKSLVEYGFRLPC  367

Query  323  AERRLLALFDDRKNELAHL----ATHGP-------------------ENPKLEM------  353
            A       FD+   ++  +    AT GP                    +P++E+      
Sbjct  368  AYDNRPLKFDEFMQKVNQVIFVSATPGPYELEVSEQVVEQIIRPTGLIDPQVEVRPTRYQ  427

Query  354  LEKILQRQFSSSN-SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQS  412
            ++ ++           + ++   T+++A  L  +L +       +IRA  L         
Sbjct  428  VDDLVNEIVQVKKRGEKALVTVLTKKTAEMLAEYLVE------FNIRALYL--------H  473

Query  413  THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQ  467
            + +    + EV++K + G ++++V  ++  EGLD+P  ++V          L +E +++Q
Sbjct  474  SELDAIKRVEVLKKLRAGEIDVVVGVNLLREGLDLPEVSLVAILDADTEGFLRSETTLIQ  533

Query  468  ARGRARADQSVYAFVATEGSRELKRELINE---------------------ALETLMEQA  506
              GR   +++    +  +      +  I+E                      ++ LME  
Sbjct  534  IIGRTARNENGKVIMYADRITPAMQRAIDETNRRRKIQMEYNEKHGIKPKTIIKPLMEDI  593

Query  507  VAAVQKMDQAEYQAKIRDLQQAA  529
             A  +  ++  Y+     + Q  
Sbjct  594  FAPFRDKEEEMYKVYEDSILQMK  616


>sp|A8G9P6|RAPA_SERP5 RNA polymerase-associated protein RapA OS=Serratia 
proteamaculans (strain 568) OX=399741 GN=rapA PE=3 
SV=1
Length=968

 Score = 79.8 bits (195),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 78/454 (17%), Positives = 155/454 (34%), Gaps = 46/454 (10%)

Query  27   GAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGP  86
            G GKT  A  +  + L      +V+++V    L  Q   E  R  +  +++   S     
Sbjct  180  GLGKTIEAGMIIHQQLLAGRAERVLIVVP-ETLQHQWLVEMMRRFNLYFSLFDDSRYSEA  238

Query  87   RAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHT--HKDTVYNV  144
            +    +      L+IC+   L     +    E +    + L+VVDE HH    ++     
Sbjct  239  KLDSSNPFETEQLVICS---LDFVRRNKLRLEELADAQWDLLVVDEAHHLAWSEEAPSRE  295

Query  145  IMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCC  204
                  ++  Q A+ +P VL LTA+P      +  G  +H  +L   LD       Q+  
Sbjct  296  -----YQVIEQLAEHIPGVLLLTATP------EQLGQQSHFARL-RLLDPNRFHDYQDFV  343

Query  205  PQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVK  264
             +  +   +P           +    D L  L + I +    P L          +Q  +
Sbjct  344  AE--QQKYRPVADAVTLLLSGERLADDKLNLLGELIDEQDIEPLLKAANSDSDNSEQARQ  401

Query  265  LSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAE  324
                  +      RV   + R        H  +  +      Q   ++  +  + I+ A+
Sbjct  402  ELVTMLMDRHGTSRVLFRNTRNGV-KGFPHRFLHQIKLPLPTQ---YQTAIKVSGIMGAK  457

Query  325  RRLLALFDDRKNELAHLATHGPEN-------PKLEMLEKILQRQFSSSNSPRGIIFTRTR  377
            + + A   D             EN       P++E L   L     ++   + ++     
Sbjct  458  KTVEARARDMLYPEQIYQEFEGENATWWNFDPRVEWLLNYLV----ANRHEKVLVICAHA  513

Query  378  QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA  437
             +A  L   L++++ ++       L I   + + +   ++ D              +L+ 
Sbjct  514  ATALQLEQVLREREAIRAAVFHEGLSIIERDRAAAYFASEED-----------GAQVLLC  562

Query  438  TSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
            + +  EG +    + +V + L  N   + Q  GR
Sbjct  563  SEIGSEGRNFQFASHLVMFDLPFNPDLLEQRIGR  596


>sp|C3KV20|UVRB_CLOB6 UvrABC system protein B OS=Clostridium botulinum 
(strain 657 / Type Ba4) OX=515621 GN=uvrB PE=3 SV=1
Length=662

 Score = 79.5 bits (194),  Expect = 5e-14, Method: Composition-based stats.
 Identities = 37/208 (18%), Positives = 82/208 (39%), Gaps = 39/208 (19%)

Query  346  PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG  405
            P   +++ L   +Q         R ++ T T++ A  L  +L++              +G
Sbjct  425  PVKGQIDDLYTSIQETIK--KGFRILVTTLTKKMAEDLTDYLKE--------------MG  468

Query  406  AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLT  460
                   + +   ++ ++I   + G  ++LV  ++  EGLDIP   +V          L 
Sbjct  469  VKTRYLHSDIDTIERMKIIHDLRKGEFHVLVGINLLREGLDIPEVALVTILDADKEGFLR  528

Query  461  NEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA  520
            +E S++Q  GRA  +      +          ++I +++E  +++     ++  Q EY  
Sbjct  529  SETSLIQTVGRAARNSESKVIMYG--------DVITKSMEKTIKETNR--RRKIQMEYNE  578

Query  521  K--------IRDLQQAALTKRAAQAAQR  540
            K        I+D+++       A+  + 
Sbjct  579  KHGIVPKTIIKDIREVIQISDIAEERKE  606


 Score = 36.7 bits (83),  Expect = 0.90, Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 7/62 (11%)

Query  11  IMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRM  70
           I    + + +I    TG+GKT   A + +           +VL +   L  Q   EFR  
Sbjct  27  IEKGEKFQTLIGV--TGSGKTFTMANIIE-----KAQKPTLVLAHNKTLAAQLCSEFREF  79

Query  71  LD  72
             
Sbjct  80  FP  81


>sp|Q8DCG1|RAPA_VIBVU RNA polymerase-associated protein RapA OS=Vibrio 
vulnificus (strain CMCP6) OX=216895 GN=rapA PE=3 SV=1
Length=969

 Score = 79.8 bits (195),  Expect = 5e-14, Method: Composition-based stats.
 Identities = 76/480 (16%), Positives = 155/480 (32%), Gaps = 50/480 (10%)

Query  5    SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ  62
             +Q  +           +++    G GKT  A  +  + +      +++++V    L  Q
Sbjct  156  PHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQVLLGRAERILIVVP-ETLQHQ  214

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELL--QMALTSPEEEEHV  120
               E  R  +  +++                A   +       +L     L    +    
Sbjct  215  WLVEMMRRFNLHFSI------FDEERCVEAFAESDNPFDTQQYVLCSLDFLRKSRKRFEQ  268

Query  121  ELT-VFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASK  177
             L   + L+VVDE HH    +D           ++    A+  P VL LTA+P      +
Sbjct  269  ALEAEWDLLVVDEAHHLEWSQDKPSRG-----YQVVEGLAERTPGVLLLTATP------E  317

Query  178  LDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNL-CHRRSQDPFGDLLKKL  236
              G  +H  +L   LD+           +  +++        L    +  D   + + +L
Sbjct  318  QLGRESHFARL-RLLDSDRFYDYAAFVEEEAQYAPVADAITALFSGVKLADEAKNQITEL  376

Query  237  MDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDT  296
            + +  D   +  +      +  +    +      +      RV    L R   A +    
Sbjct  377  LSE-QDVEPLFRIIESNADEESKAIARQELIDNLMDRHGTGRV----LFRNTRAAIKGFP  431

Query  297  VRAVDALA-ALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLE  355
            VR V  L   +   Y         I            +   E       G E+   +   
Sbjct  432  VRNVHLLPMPIPTQYTTSMRVSGMIGGKLAPEARAMKNLYPEEIFQEFEGEESSWWQFDC  491

Query  356  KI--LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQST  413
            ++  L  +  +  S + ++      +A  L   L++++G     IRA +           
Sbjct  492  RVNWLLEKLKAQRSEKVLVIASRASTALQLEQALREREG-----IRATVF--------HE  538

Query  414  HMTQRDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
             M+  ++ +    F  ++G   +L+ + +  EG +    N +V + L  N   + Q  GR
Sbjct  539  GMSILERDKAAAYFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGR  598


>sp|Q3KF38|UVRB_PSEPF UvrABC system protein B OS=Pseudomonas fluorescens 
(strain Pf0-1) OX=205922 GN=uvrB PE=3 SV=1
Length=671

 Score = 79.5 bits (194),  Expect = 5e-14, Method: Composition-based stats.
 Identities = 30/143 (21%), Positives = 59/143 (41%), Gaps = 20/143 (14%)

Query  349  PKLEMLEKILQRQFSSSN-SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG  407
            P L  ++ +L           R ++ T T++ A  L  +L                 G  
Sbjct  425  PALTQVDDLLSEITKRVAVEERVLVTTLTKRMAEDLTDYLAD--------------HGVR  470

Query  408  NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNE  462
                 + +   ++ E+I+  + GT ++LV  ++  EGLD+P  ++V          L +E
Sbjct  471  VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSE  530

Query  463  ISMVQARGRARADQSVYAFVATE  485
             S++Q  GRA  + +  A +  +
Sbjct  531  RSLIQTIGRAARNLNGRAILYAD  553


 Score = 37.9 bits (86),  Expect = 0.40, Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 9/66 (14%)

Query  8   WEVIMPALEGKNIIIWLPTGAGKTR-AAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEE  66
            E I   L  + ++    TG+GKT   A  +A+           +VL     L  Q   E
Sbjct  24  VEGIEAGLSHQTLLGV--TGSGKTFSIANVIAQV------QRPTLVLAPNKTLAAQLYGE  75

Query  67  FRRMLD  72
           F+    
Sbjct  76  FKSFFP  81


>sp|Q4IAS1|DBP4_GIBZE ATP-dependent RNA helicase DBP4 OS=Gibberella 
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / 
NRRL 31084 / PH-1) OX=229533 GN=DBP4 PE=3 SV=1
Length=793

 Score = 79.5 bits (194),  Expect = 5e-14, Method: Composition-based stats.
 Identities = 46/303 (15%), Positives = 90/303 (30%), Gaps = 25/303 (8%)

Query  192  LDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSR  251
            L    I   +    Q+ E  ++   +++          G    K   +  D + +   + 
Sbjct  124  LGALIISPTRELAAQIFEVLRKVGTKHSFSAGLV---IGGKSLKEEAERLDRMNILVCTP  180

Query  252  KFGTQMYEQ-QVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFY  310
                Q ++Q      +    L   +  R+  +  +   DAL+ H   R    L       
Sbjct  181  GRMLQHFDQTAGFDANNLQILVLDEADRIMDMGFQSAVDALIEH-LPRERQTLMFSATQS  239

Query  311  HREHVTKTQILCAERRL---LALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNS  367
             +        L     +    A        L       P   KL+ L   ++        
Sbjct  240  KKVSDLARLSLKDPEYVSVHEAAVSATPTNLQQHYIVTPLTEKLDTLYGFIKANLK----  295

Query  368  PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF  427
             + I+F  + +    +    +  Q             G           Q  + E+  +F
Sbjct  296  SKIIVFLSSGKQVRFVYESFRHLQP------------GIPLLHLHGRQKQGARMEITSRF  343

Query  428  QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEG  486
                   L AT V   G+D P  + V++     +  + +   GR AR + +  A +  + 
Sbjct  344  TAAKQTCLFATDVVARGIDFPAVDWVIQADCPEDVDTYIHRVGRTARYESNGRAVLFLDP  403

Query  487  SRE  489
            S E
Sbjct  404  SEE  406


 Score = 59.4 bits (142),  Expect = 9e-08, Method: Composition-based stats.
 Identities = 25/134 (19%), Positives = 47/134 (35%), Gaps = 8/134 (6%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTR---AAAY--VAKRHLETVDGAKVVVLVNRVHLVT  61
            Q   +  AL+GK+I+    TG+GKT          + +      DG   +++     L  
Sbjct  78   QARAVPLALKGKDILGAAKTGSGKTLAFLIPVLEKLYRAQWTEFDGLGALIISPTRELAA  137

Query  62   QHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVE  121
            Q  E  R++         L                 ++L+CT   +   L   ++    +
Sbjct  138  QIFEVLRKVGTKHSFSAGLVIGGKSLKEEAERLDRMNILVCTPGRM---LQHFDQTAGFD  194

Query  122  LTVFSLIVVDECHH  135
                 ++V+DE   
Sbjct  195  ANNLQILVLDEADR  208


>sp|B9DSH1|UVRB_STRU0 UvrABC system protein B OS=Streptococcus 
uberis (strain ATCC BAA-854 / 0140J) OX=218495 GN=uvrB PE=3 
SV=1
Length=663

 Score = 79.5 bits (194),  Expect = 5e-14, Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 75/184 (41%), Gaps = 21/184 (11%)

Query  349  PKLEMLEKILQRQ-FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG  407
            P +  ++ +L      +    R  I T T++ A  L  +L++              +G  
Sbjct  431  PTMGQMDDLLGEINLRTERGERTFITTLTKKMAEDLTDYLKE--------------MGVK  476

Query  408  NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNE  462
                 + +   ++ E+I+  + G  ++L+  ++  EG+D+P  ++V          L NE
Sbjct  477  VKYMHSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNE  536

Query  463  ISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK  521
              ++Q  GR AR  Q      A + +  +++ +   A    ++ A      +     + +
Sbjct  537  RGLIQTIGRAARNSQGRVIMYADKMTESMQKAIDETARRRQIQMAYNEEHGIVPQTIKKE  596

Query  522  IRDL  525
            IRDL
Sbjct  597  IRDL  600


>sp|Q56243|UVRB_THET8 UvrABC system protein B OS=Thermus thermophilus 
(strain ATCC 27634 / DSM 579 / HB8) OX=300852 GN=uvrB 
PE=1 SV=2
Length=665

 Score = 79.5 bits (194),  Expect = 5e-14, Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 68/182 (37%), Gaps = 24/182 (13%)

Query  363  SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE  422
             ++   R ++   T + A  L  +L +               G         +   ++Q 
Sbjct  436  RAARGERTLVTVLTVRMAEELTSFLVE--------------HGIRARYLHHELDAFERQA  481

Query  423  VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGR-ARADQ  476
            +I+  + G  + LV  ++  EGLDIP  ++V          L +E S++Q  GR AR  +
Sbjct  482  LIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAR  541

Query  477  SVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQ  536
                  A   S  ++R +     ET   +A+     ++       +R   +A +     +
Sbjct  542  GEVWLYADRVSEAMQRAIE----ETNRRRALQEAYNLEHGITPETVRKEVRAVIRPEGYE  597

Query  537  AA  538
             A
Sbjct  598  EA  599


 Score = 34.4 bits (77),  Expect = 3.9, Method: Composition-based stats.
 Identities = 15/47 (32%), Positives = 18/47 (38%), Gaps = 5/47 (11%)

Query  26  TGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLD  72
           TG GKT   A V +       G   +VL     L  Q   EFR +  
Sbjct  38  TGTGKTVTMAKVIEAL-----GRPALVLAPNKILAAQLAAEFRELFP  79


>sp|P45818|ROK1_YEAST ATP-dependent RNA helicase ROK1 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=ROK1 
PE=1 SV=1
Length=564

 Score = 79.1 bits (193),  Expect = 5e-14, Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 59/156 (38%), Gaps = 18/156 (12%)

Query  313  EHVTKTQILCAERRLLALFDDRKNELAH-LATHGPENPKLEMLEKILQRQFSSSNSPRGI  371
            E + ++ ++   R ++   +     +   L   G E  KL  + +++Q        P  I
Sbjct  320  EEIAQSIMMDPVRVIIGHKEAANTNIEQKLIFCGNEEGKLIAIRQLVQE---GEFKPPII  376

Query  372  IFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGT  431
            IF  +   A +L         L    I   ++            T   +  +I++F+ G 
Sbjct  377  IFLESITRAKAL------YHELMYDRINVDVI--------HAERTALQRDRIIERFKTGE  422

Query  432  LNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
            L  L+ T V   G+D    N+V+ Y +  +  + V 
Sbjct  423  LWCLICTDVLARGIDFKGVNLVINYDVPGSSQAYVH  458


 Score = 53.6 bits (127),  Expect = 5e-06, Method: Composition-based stats.
 Identities = 29/139 (21%), Positives = 56/139 (40%), Gaps = 17/139 (12%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRH----LETVDGAKVVVLVNRVHLVTQ  62
            Q E I  AL  ++++   PTG+GKT  A  +         +   G K +++     L  Q
Sbjct  149  QCECIPVALNNRDVLACGPTGSGKTL-AFLIPLVQQIIDDKQTAGLKGLIISPTKELANQ  207

Query  63   HGEEFRRML-------DGRWTVTTLSGDMGPRAGFGHLA-RCHDLLICTAELLQMALTSP  114
               E  ++             V  LS  +G +     ++ + +D++I T   L   +   
Sbjct  208  IFIECFKLSYKIFLEKKRPLQVALLSKSLGAKLKNKVVSDKKYDIIISTPLRLIDVV---  264

Query  115  EEEEHVELTVFSLIVVDEC  133
             + E ++L+    ++ DE 
Sbjct  265  -KNEALDLSKVKHLIFDEA  282


>sp|Q4KF19|UVRB_PSEF5 UvrABC system protein B OS=Pseudomonas fluorescens 
(strain ATCC BAA-477 / NRRL B-23932 / Pf-5) OX=220664 
GN=uvrB PE=3 SV=1
Length=671

 Score = 79.5 bits (194),  Expect = 5e-14, Method: Composition-based stats.
 Identities = 30/143 (21%), Positives = 59/143 (41%), Gaps = 20/143 (14%)

Query  349  PKLEMLEKILQRQFSSSN-SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG  407
            P L  ++ +L           R ++ T T++ A  L  +L                 G  
Sbjct  425  PALTQVDDLLSEITKRVAVEERVLVTTLTKRMAEDLTDYLAD--------------HGVR  470

Query  408  NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNE  462
                 + +   ++ E+I+  + GT ++LV  ++  EGLD+P  ++V          L +E
Sbjct  471  VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSE  530

Query  463  ISMVQARGRARADQSVYAFVATE  485
             S++Q  GRA  + +  A +  +
Sbjct  531  RSLIQTIGRAARNLNGRAILYAD  553


 Score = 36.7 bits (83),  Expect = 0.94, Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 9/66 (14%)

Query  8   WEVIMPALEGKNIIIWLPTGAGKTR-AAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEE  66
            E I   L  + ++    TG+GKT   A  +A+           +VL     L  Q   E
Sbjct  24  VEGIEAGLAHQTLLGV--TGSGKTFSIANVIAQV------QRPTLVLAPNKTLAAQLYGE  75

Query  67  FRRMLD  72
           F+    
Sbjct  76  FKAFFP  81


>sp|B1KJA5|RAPA_SHEWM RNA polymerase-associated protein RapA OS=Shewanella 
woodyi (strain ATCC 51908 / MS32) OX=392500 GN=rapA 
PE=3 SV=1
Length=968

 Score = 79.8 bits (195),  Expect = 5e-14, Method: Composition-based stats.
 Identities = 70/454 (15%), Positives = 143/454 (31%), Gaps = 44/454 (10%)

Query  27   GAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGP  86
            G GKT  A  +  + L T    +++V+V    L  Q   E  R  + +++V      +  
Sbjct  179  GLGKTIEAGLIIHQQLLTGRAERILVIVPD-TLRHQWLVEMLRRFNLKFSVFDEDRCVEA  237

Query  87   RAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHT--HKDTVYNV  144
             A   +      L+IC+       L      +      + L+VVDE HH    +D     
Sbjct  238  YADSDNPFYTEQLVICS----LELLRKKRRLDQALAADWDLMVVDEAHHLEWTEDAPSRA  293

Query  145  IMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCC  204
                   +    ++ +P VL LTA+P      +   A   +L      D    +  +   
Sbjct  294  -----YRIVEALSEEIPGVLLLTATP-DQLGHQSHFARLRLLDPDRFYDYEAFLKEETNY  347

Query  205  PQLQEHS-----QQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYE  259
              +   +      +P  Q  +            +    D I       +  +     + +
Sbjct  348  ADIASTADALAGNEPLSQ-EIIDNLKTQLAEKDITAATDIIQATDADVDQQQAARDALLQ  406

Query  260  QQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQ  319
              + +      L       V     R +N             A        H +   K +
Sbjct  407  DLLDRHGTGRVLYRNSRASVKGFPTRIFNQYPQKMPAQYVTAARVGAMMNGHLDTAGKVK  466

Query  320  ILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQS  379
               +  ++   F+               +P+++ L   L+     +   + +I     ++
Sbjct  467  QALSPEKIYQEFESSSASWWKF------DPRVDWLIDFLKE----NRREKVLIIASQAET  516

Query  380  AHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF--QDGTLNLLVA  437
            A SL   L+ ++G+Q                    M+  ++ +    F  + G    L+ 
Sbjct  517  ALSLEEALRTREGIQATVFH-------------EGMSIIERDKAGAYFAQETGGAQALIC  563

Query  438  TSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
            + +  EG +    + ++ + L  N   + Q  GR
Sbjct  564  SEIGSEGRNFQFASQLILFDLPLNPDLLEQRIGR  597


>sp|Q5GXX4|UVRB_XANOR UvrABC system protein B OS=Xanthomonas oryzae 
pv. oryzae (strain KACC10331 / KXO85) OX=291331 GN=uvrB 
PE=3 SV=1
Length=688

 Score = 79.5 bits (194),  Expect = 5e-14, Method: Composition-based stats.
 Identities = 37/220 (17%), Positives = 88/220 (40%), Gaps = 22/220 (10%)

Query  337  ELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTV  396
             +  +    P   +++ L   +  +    +  R ++ T T++ A +L  +L +       
Sbjct  433  LIDPVVEIRPVGTQVDDLMSEIHERIKLGD--RVLVTTLTKRMAENLTEYLGEH------  484

Query  397  DIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY  456
             IR + L         + +   ++ E+I+  + G  ++LV  ++  EGLD+P  ++V   
Sbjct  485  GIRVRYL--------HSDIDTVERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAIL  536

Query  457  G-----LLTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQ  511
                   L +  S++Q  GRA  +    A +  +      +  I+E+     +Q    ++
Sbjct  537  DADKEGFLRSTGSLIQTIGRAARNLRGKAILYADKMTRSMQAAIDESDRRREKQVEYNLE  596

Query  512  -KMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVE  550
              +     +  I D+ + A    A + + +   + +   E
Sbjct  597  HGITPESVERPISDIMEGAREDAAEKKSGKGRSKSRQVAE  636


 Score = 35.9 bits (81),  Expect = 1.6, Method: Composition-based stats.
 Identities = 13/62 (21%), Positives = 22/62 (35%), Gaps = 7/62 (11%)

Query  11  IMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRM  70
               L  + ++    TG+GKT   A V ++          +V+     L  Q   EF+  
Sbjct  43  FEAGLAKQTLLGV--TGSGKTYTIANVVQQV-----QKPTLVMAPNKTLAAQLYGEFKSF  95

Query  71  LD  72
             
Sbjct  96  FP  97


>sp|Q8ZRV8|RAPA_SALTY RNA polymerase-associated protein RapA OS=Salmonella 
typhimurium (strain LT2 / SGSC1412 / ATCC 700720) 
OX=99287 GN=rapA PE=3 SV=3
Length=968

 Score = 79.8 bits (195),  Expect = 5e-14, Method: Composition-based stats.
 Identities = 79/476 (17%), Positives = 150/476 (32%), Gaps = 44/476 (9%)

Query  5    SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ  62
             +Q  +           +++    G GKT  A  +  + L +    +V+++V    L  Q
Sbjct  156  PHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVP-ETLQHQ  214

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL  122
               E  R  + R+ +         +    +      L+IC+   L  A  + +  EH+  
Sbjct  215  WLVEMLRRFNLRFALFDDERYTEAQHDAYNPFETEQLVICS---LDFARRNKQRLEHLCD  271

Query  123  TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG  180
              + L+VVDE HH     D               Q A+ +P VL LTA+P      +  G
Sbjct  272  AEWDLLVVDEAHHLVWSTDAPSRE-----YMAIEQLAERVPGVLLLTATP------EQLG  320

Query  181  AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI  240
              +H  +L   L             + ++ + +P                D L +L D I
Sbjct  321  MESHFARL--RLLDPNRFHDFEQFVE-EQKNYRPVADAVAMLLAGNKLSNDELNRLGDLI  377

Query  241  HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV  300
             +    P L      +   Q       +  +      RV   + R         +     
Sbjct  378  GEQDIEPLLQAANSDRDDAQAARDELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTVK  437

Query  301  DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG---PENPKLEMLEKI  357
              L        +           E R   +    +         G     +P++E L   
Sbjct  438  LPLPTQYQTAIKVSGIMGARKSPEDRARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGY  497

Query  358  LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ  417
            L        S + ++      +A  L   L++++G++                    M+ 
Sbjct  498  LTSH----RSQKVLVICAKATTALQLEQVLREREGIRAAVFH-------------EGMSI  540

Query  418  RDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
             ++      F  +D    +L+ + +  EG +    + +V + L  N   + Q  GR
Sbjct  541  IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGR  596


>sp|Q5E881|RAPA_ALIF1 RNA polymerase-associated protein RapA OS=Aliivibrio 
fischeri (strain ATCC 700601 / ES114) OX=312309 
GN=rapA PE=3 SV=1
Length=952

 Score = 79.8 bits (195),  Expect = 5e-14, Method: Composition-based stats.
 Identities = 73/459 (16%), Positives = 156/459 (34%), Gaps = 54/459 (12%)

Query  27   GAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGP  86
            G GKT  A  +  + + +    +V+++V    L  Q   E  R  +  +++         
Sbjct  180  GLGKTIEAGMIIHQQVLSGRAERVLIVVP-ETLQHQWLVEMMRRFNLHFSIF-------D  231

Query  87   RAGFGHLARCHDLLICTAELLQMAL----TSPEEEEHVELTVFSLIVVDECHHTHKDT--  140
                       +    TA+ +  +L     S    E V    + L+VVDE HH   +   
Sbjct  232  EERCVEAYADSENPFDTAQFVLCSLDFIRKSKRRFEQVVEADWDLLVVDEAHHLEWNQTK  291

Query  141  VYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSP  200
                      ++    A+  P VL LTA+P      +  G  +H  +L   LD       
Sbjct  292  PSRE-----YQVIEAIAEETPGVLLLTATP------EQLGHESHFARL-RLLDPDRFYDY  339

Query  201  QNCCPQLQEHSQQPCKQYNLC---HRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQM  257
                 + +++  QP            +  +   + + +L+ +  D   +  +      + 
Sbjct  340  DAFVEEERQY--QPVADAVTALMSGEKLSNDAKNRITELLSE-QDVEPLFRIIESSAAED  396

Query  258  YEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAA-LQDFYHREHVT  316
             + Q  +      +      RV   + R         +       L +          + 
Sbjct  397  EQAQARQELVDNLMDRHGTGRVLFRNTRAAIKGFPQRNLNLMPMPLPSQYATSMRVATMM  456

Query  317  KTQILCAERRLLALF--DDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFT  374
              ++    R +  L+  +  +      AT    +P++  L ++L+     + + + +I  
Sbjct  457  GGRMTDEARAMKMLYPEEIFQEFEGDSATWWQFDPRVNWLLELLKE----NRNEKVLIIA  512

Query  375  RTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF--QDGTL  432
                +A  L   L++++G     IR  +            M+  ++ +    F  ++G  
Sbjct  513  SRASTALQLEQALREREG-----IRGTVF--------HEGMSIIERDKAAAYFAQEEGGA  559

Query  433  NLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
             +L+ + +  EG +    N +V + L  N   + Q  GR
Sbjct  560  QVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGR  598


>sp|P08956|T1RK_ECOLI Type I restriction enzyme EcoKI endonuclease 
subunit OS=Escherichia coli (strain K12) OX=83333 GN=hsdR 
PE=1 SV=3
Length=1170

 Score = 79.8 bits (195),  Expect = 5e-14, Method: Composition-based stats.
 Identities = 46/266 (17%), Positives = 90/266 (34%), Gaps = 40/266 (15%)

Query  1    MELRSYQ---WEVIMPALEG--KNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVN  55
            + LR YQ      +  A+    + I++ + TG GKTR A  +  R +++    +++ LV+
Sbjct  443  LGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVD  502

Query  56   RVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLAR-CHDLLICTAELLQMALTSP  114
            R  L  Q         D R    T +     +            + + T + L     + 
Sbjct  503  RRSLGEQ---ALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVK--RTL  557

Query  115  EEEEHVELTVFSLIVVDECH----------------HTHKDT--VYNVIMSQYLELKLQR  156
            + +E + +  +  IVVDE H                 +  D    Y  I+  +  +K+  
Sbjct  558  QSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKI--  615

Query  157  AQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCK  216
                     LTA+P           +       A +D + I         +  ++Q+   
Sbjct  616  --------ALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQI-ITRNAQEGVY  666

Query  217  QYNLCHRRSQDPFGDLLKKLMDQIHD  242
                       P G+++   ++   D
Sbjct  667  LSKGEQVERISPQGEVINDTLEDDQD  692


 Score = 52.5 bits (124),  Expect = 1e-05, Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 61/176 (35%), Gaps = 5/176 (3%)

Query  299  AVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEM-LEKI  357
             +    A +  Y  +     +I      +    +D ++        G   P     +   
Sbjct  655  QIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNE  714

Query  358  LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ  417
            L      + S + ++F  T   A  ++  L+     +   +    +I     +       
Sbjct  715  LTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKI---TGDADKDA  771

Query  418  RDQQEVIQKF-QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA  472
            R  Q +I +F ++   N++V   +   G+DIP    +V    + + I   Q +GRA
Sbjct  772  RKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRA  827


>sp|B0CE09|UVRB_ACAM1 UvrABC system protein B OS=Acaryochloris 
marina (strain MBIC 11017) OX=329726 GN=uvrB PE=3 SV=1
Length=668

 Score = 79.5 bits (194),  Expect = 5e-14, Method: Composition-based stats.
 Identities = 40/251 (16%), Positives = 87/251 (35%), Gaps = 30/251 (12%)

Query  319  QILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQ  378
            +I  +E R++         +       P   +++ L   +Q +       R +I T T++
Sbjct  398  EIELSENRVVEQVIRPTGVVDPEIFVRPTTGQVDDLLAEIQERVGRQE--RTLITTLTKR  455

Query  379  SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT  438
             A  L  + +++              G       + +    + E+++  ++G  ++L+  
Sbjct  456  MAEDLTEYFEER--------------GVRVRYLHSEINAIQRIEILRDLREGVFDVLIGV  501

Query  439  SVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAFVATEG-------  486
            ++  EGLD+P  ++V          L  E S++Q  GRA       A +  +        
Sbjct  502  NLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAARHVRGQAILYADNLTDSMEK  561

Query  487  --SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQR  544
              S   +R  I  A           V+K       A +   ++    +      Q ++  
Sbjct  562  AISETERRRKIQLAYNKKHGITPQPVKKGSDNAILAFLEVSRRLNTQELEDAYEQADDLP  621

Query  545  QQFPVEHVQLL  555
             +   E +  L
Sbjct  622  LESVPELITQL  632


 Score = 35.9 bits (81),  Expect = 1.3, Method: Composition-based stats.
 Identities = 13/47 (28%), Positives = 17/47 (36%), Gaps = 5/47 (11%)

Query  26  TGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLD  72
           TG GKT   A V +       G   ++L +   L  Q   E R    
Sbjct  40  TGTGKTFTMAKVIEEI-----GKPTLILAHNKTLAAQLCNEIRSFFP  81


>sp|Q7MHE6|RAPA_VIBVY RNA polymerase-associated protein RapA OS=Vibrio 
vulnificus (strain YJ016) OX=196600 GN=rapA PE=3 SV=1
Length=969

 Score = 79.5 bits (194),  Expect = 5e-14, Method: Composition-based stats.
 Identities = 76/480 (16%), Positives = 155/480 (32%), Gaps = 50/480 (10%)

Query  5    SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ  62
             +Q  +           +++    G GKT  A  +  + +      +++++V    L  Q
Sbjct  156  PHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQVLLGRAERILIVVP-ETLQHQ  214

Query  63   HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELL--QMALTSPEEEEHV  120
               E  R  +  +++                A   +       +L     L    +    
Sbjct  215  WLVEMMRRFNLHFSI------FDEERCIEAFAESDNPFDTQQYVLCSLDFLRKSRKRFEQ  268

Query  121  ELT-VFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASK  177
             L   + L+VVDE HH    +D           ++    A+  P VL LTA+P      +
Sbjct  269  ALEADWDLLVVDEAHHLEWSQDKPSRG-----YQVVEGLAERTPGVLLLTATP------E  317

Query  178  LDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNL-CHRRSQDPFGDLLKKL  236
              G  +H  +L   LD+           +  +++        L    +  D   + + +L
Sbjct  318  QLGRESHFARL-RLLDSDRFYDYAAFVEEEAQYAPVADAITALFSGVKLADEAKNQITEL  376

Query  237  MDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDT  296
            + +  D   +  +      +  +    +      +      RV    L R   A +    
Sbjct  377  LSE-QDVEPLFRIIESNADEESKAIARQELIDNLMDRHGTGRV----LFRNTRAAIKGFP  431

Query  297  VRAVDALA-ALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLE  355
            VR V  L   +   Y         I            +   E       G E+   +   
Sbjct  432  VRNVHLLPMPIPTQYTTSMRVSGMIGGKLAPEARAMKNLYPEEIFQEFEGEESSWWQFDC  491

Query  356  KI--LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQST  413
            ++  L  +  +  S + ++      +A  L   L++++G     IRA +           
Sbjct  492  RVNWLLEKLKAQRSEKVLVIASRASTALQLEQALREREG-----IRATVF--------HE  538

Query  414  HMTQRDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR  471
             M+  ++ +    F  ++G   +L+ + +  EG +    N +V + L  N   + Q  GR
Sbjct  539  GMSILERDKAAAYFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGR  598


>sp|P0CR08|SPB4_CRYNJ ATP-dependent rRNA helicase SPB4 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=SPB4 PE=3 SV=2
Length=725

 Score = 79.5 bits (194),  Expect = 5e-14, Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 60/180 (33%), Gaps = 23/180 (13%)

Query  316  TKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTR  375
             K      ERR      +      H         K   L ++L  + +     + I++  
Sbjct  268  RKDGEEPKERRTPMALQNTYLVCRHAE-------KTLQLIRLLLCESTKHERSKFIVYFS  320

Query  376  TRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN--  433
            T  +       L +   L    +          +S    +  + ++  +  F     +  
Sbjct  321  TCAAVDYFYRILSRLPSLSKFHL----------TSFHGELPPKIRETALSTFTSHPSSHL  370

Query  434  ---LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRE  489
               +L+ T VA  G+D    +VV++Y   T+  +     GR ARA +   A V     RE
Sbjct  371  SPAVLLCTDVAARGVDFLDIDVVIQYDAPTDPKTFSHRAGRTARAGRRGKAVVLLGKGRE  430


 Score = 52.5 bits (124),  Expect = 1e-05, Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 69/228 (30%), Gaps = 45/228 (20%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAK-----VVVLVNRVHLV  60
            Q   I  A++ ++ ++   TG+GKT A    V +R     +  K      +V+     L 
Sbjct  42   QAGTIPRAVKNQDCVVEAVTGSGKTLAFTIPVLERLSRREEPYKKGEIAAIVVAPTRELA  101

Query  61   TQHGEEFRRML-----------------------------------DGRWTVTTLSGDMG  85
            TQ    F   L                                      + +  L     
Sbjct  102  TQIHAVFHHFLSSLIPPESEEETGDVEAHAPPFASSSRSPSPQTPDKPLFPLPMLVTSGT  161

Query  86   PRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVI  145
            P       +    +LI T   L   L +P     V ++   ++V+DE         +   
Sbjct  162  PTPYETFQSTHPSILIGTPGRLAAFLLNPRGLAIVRVSELDVLVLDEADRLLSSPDHRRD  221

Query  146  MSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLD  193
            + + +    ++ +        +A+        +   + + +++  NL 
Sbjct  222  VERIMRHLPKQRRTHL----FSATMTDAVEEMIGLGLRNPVRIVVNLK  265


>sp|C4ZHN1|UVRB_AGARV UvrABC system protein B OS=Agathobacter 
rectalis (strain ATCC 33656 / DSM 3377 / JCM 17463 / KCTC 5835 
/ VPI 0990) OX=515619 GN=uvrB PE=3 SV=1
Length=660

 Score = 79.1 bits (193),  Expect = 5e-14, Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 79/211 (37%), Gaps = 23/211 (11%)

Query  363  SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE  422
             ++N  + +I T T++ A  L  ++ +              +G       + +   ++ E
Sbjct  439  ETANHHKVLITTLTKRMAEDLTNYMAE--------------LGIRVKYLHSDIDTLERAE  484

Query  423  VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQS  477
            +I+  +    ++LV  ++  EGLDIP   +V          L +E S++Q  GRA  +  
Sbjct  485  IIRDLRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAARNSE  544

Query  478  VYAFVATEGSRELKRELINE-ALETLMEQAVAAVQKMDQAEYQAKIRDL---QQAALTKR  533
             +  +  +   +  R  I+E      +++       +     Q  +RDL    +      
Sbjct  545  GHVIMYADKITDSMRVAIDETKRRRKVQEEYNEAHGITPQTIQKSVRDLIAISKKVAADE  604

Query  534  AAQAAQRENQRQQFPVEHVQLLCINCMVAVG  564
             A     E+  ++   +H+  +      A  
Sbjct  605  NALDKDPESMSKKELEKHIADIEKKMKKAAA  635


>sp|A6ZU15|ROK1_YEAS7 ATP-dependent RNA helicase ROK1 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=ROK1 PE=3 SV=1
Length=564

 Score = 79.1 bits (193),  Expect = 5e-14, Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 59/156 (38%), Gaps = 18/156 (12%)

Query  313  EHVTKTQILCAERRLLALFDDRKNELAH-LATHGPENPKLEMLEKILQRQFSSSNSPRGI  371
            E + ++ ++   R ++   +     +   L   G E  KL  + +++Q        P  I
Sbjct  320  EEIAQSIMMDPVRVIIGHKEAANTNIEQKLIFCGNEEGKLIAIRQLVQE---GEFKPPII  376

Query  372  IFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGT  431
            IF  +   A +L         L    I   ++            T   +  +I++F+ G 
Sbjct  377  IFLESITRAKAL------YHELMYDRINVDVI--------HAERTALQRDRIIERFKTGE  422

Query  432  LNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ  467
            L  L+ T V   G+D    N+V+ Y +  +  + V 
Sbjct  423  LWCLICTDVLARGIDFKGVNLVINYDVPGSSQAYVH  458


 Score = 53.3 bits (126),  Expect = 5e-06, Method: Composition-based stats.
 Identities = 29/139 (21%), Positives = 56/139 (40%), Gaps = 17/139 (12%)

Query  7    QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRH----LETVDGAKVVVLVNRVHLVTQ  62
            Q E I  AL  ++++   PTG+GKT  A  +         +   G K +++     L  Q
Sbjct  149  QCECIPVALNNRDVLACGPTGSGKTL-AFLIPLVQQIIDDKQTAGLKGLIISPTKELANQ  207

Query  63   HGEEFRRML-------DGRWTVTTLSGDMGPRAGFGHLA-RCHDLLICTAELLQMALTSP  114
               E  ++             V  LS  +G +     ++ + +D++I T   L   +   
Sbjct  208  IFIECFKLSHKIFLEKKRPLQVALLSKSLGAKLKNKVVSDKKYDIIISTPLRLIDVV---  264

Query  115  EEEEHVELTVFSLIVVDEC  133
             + E ++L+    ++ DE 
Sbjct  265  -KNEALDLSKVKHLIFDEA  282



Lambda      K        H        a         alpha
   0.317    0.124    0.331    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0379    0.140     1.90     42.6     43.6 

Effective search space used: 75046754048


  Database: uniprot_sprot.fasta
    Posted date:  Oct 6, 2024  4:14 PM
  Number of letters in database: 207,235,166
  Number of sequences in database:  572,214



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40