PSIBLAST 2.11.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Stephen F. Altschul, John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: uniprot_sprot.fasta 572,214 sequences; 207,235,166 total letters Results from round 1 Query= sp|Q96C10|DHX58_HUMAN ATP-dependent RNA helicase DHX58 OS=Homo sapiens OX=9606 GN=DHX58 PE=1 SV=1 Length=678 Score E Sequences producing significant alignments: (Bits) Value sp|Q96C10|DHX58_HUMAN ATP-dependent RNA helicase DHX58 OS=Homo sa... 1410 0.0 sp|Q99J87|DHX58_MOUSE ATP-dependent RNA helicase DHX58 OS=Mus mus... 1103 0.0 sp|Q9BYX4|IFIH1_HUMAN Interferon-induced helicase C domain-contai... 528 8e-175 sp|Q8R5F7|IFIH1_MOUSE Interferon-induced helicase C domain-contai... 522 3e-172 sp|O95786|RIGI_HUMAN Antiviral innate immune response receptor RI... 317 3e-95 sp|Q6Q899|RIGI_MOUSE Antiviral innate immune response receptor RI... 308 5e-92 sp|Q9GLV6|RIGI_PIG Antiviral innate immune response receptor RIG-... 280 2e-81 sp|Q7S8J7|DCL1_NEUCR Dicer-like protein 1 OS=Neurospora crassa (s... 135 2e-31 sp|A2RAF3|DCL1_ASPNC Dicer-like protein 1 OS=Aspergillus niger (s... 130 8e-30 sp|A1DE13|DCL1_NEOFI Dicer-like protein 1 OS=Neosartorya fischeri... 129 2e-29 sp|Q4WVE3|DCL1_ASPFU Dicer-like protein 1 OS=Aspergillus fumigatu... 125 2e-28 sp|Q2U6C4|DCL1_ASPOR Dicer-like protein 1 OS=Aspergillus oryzae (... 124 8e-28 sp|A1CBC9|DCL1_ASPCL Dicer-like protein 1 OS=Aspergillus clavatus... 124 8e-28 sp|Q0CW42|DCL1_ASPTN Dicer-like protein 1 OS=Aspergillus terreus ... 117 7e-26 sp|Q0UI93|DCL1_PHANO Dicer-like protein 1 OS=Phaeosphaeria nodoru... 116 1e-25 sp|Q58900|Y1505_METJA Putative ATP-dependent RNA helicase MJ1505 ... 108 3e-23 sp|Q2VF18|DCL2_CRYPA Dicer-like protein 2 OS=Cryphonectria parasi... 109 3e-23 sp|Q7XD96|DCL3B_ORYSJ Endoribonuclease Dicer homolog 3b OS=Oryza ... 104 1e-21 sp|Q4WA22|DCL2_ASPFU Dicer-like protein 2 OS=Aspergillus fumigatu... 103 3e-21 sp|Q1DKI1|DCL1_COCIM Dicer-like protein 1 OS=Coccidioides immitis... 102 3e-21 sp|P0C5H7|DCL2_EMENI Dicer-like protein 2 OS=Emericella nidulans ... 101 1e-20 sp|Q2H0G2|DCL1_CHAGB Dicer-like protein 1 OS=Chaetomium globosum ... 100 2e-20 sp|A4RHU9|DCL2_PYRO7 Dicer-like protein 2 OS=Pyricularia oryzae (... 100 3e-20 sp|Q9UT23|MPH1_SCHPO ATP-dependent DNA helicase fml1 OS=Schizosac... 99.8 3e-20 sp|Q09884|DCR1_SCHPO Protein Dicer OS=Schizosaccharomyces pombe (... 99.8 4e-20 sp|A4RKC3|DCL1_PYRO7 Dicer-like protein 1 OS=Pyricularia oryzae (... 99.4 5e-20 sp|Q5N870|DCL3A_ORYSJ Endoribonuclease Dicer homolog 3a OS=Oryza ... 97.1 3e-19 sp|A1D9Z6|DCL2_NEOFI Dicer-like protein 2 OS=Neosartorya fischeri... 96.3 4e-19 sp|P34529|DCR1_CAEEL Endoribonuclease dcr-1 OS=Caenorhabditis ele... 94.4 2e-18 sp|Q2VF19|DCL1_CRYPA Dicer-like protein 1 OS=Cryphonectria parasi... 89.7 4e-17 sp|A4RN08|MPH1_PYRO7 ATP-dependent DNA helicase MPH1 OS=Pyricular... 89.7 4e-17 sp|Q2UNX5|DCL2_ASPOR Dicer-like protein 2 OS=Aspergillus oryzae (... 89.4 5e-17 sp|Q0CWI2|MPH1_ASPTN ATP-dependent DNA helicase mph1 OS=Aspergill... 88.6 9e-17 sp|Q2URJ5|MPH1_ASPOR ATP-dependent DNA helicase mph1 OS=Aspergill... 88.2 1e-16 sp|Q0CEI2|DCL2_ASPTN Dicer-like protein 2 OS=Aspergillus terreus ... 87.4 2e-16 sp|Q8R418|DICER_MOUSE Endoribonuclease Dicer OS=Mus musculus OX=1... 86.3 6e-16 sp|A1D4V5|MPH1_NEOFI ATP-dependent DNA helicase mph1 OS=Neosartor... 85.9 7e-16 sp|Q4WKB5|MPH1_ASPFU ATP-dependent DNA helicase mph1 OS=Aspergill... 84.3 2e-15 sp|B0XMV6|MPH1_ASPFC ATP-dependent DNA helicase mph1 OS=Aspergill... 84.3 2e-15 sp|Q5A1A0|MPH1_CANAL ATP-dependent DNA helicase MPH1 OS=Candida a... 84.0 2e-15 sp|A1CS00|MPH1_ASPCL ATP-dependent DNA helicase mph1 OS=Aspergill... 84.0 2e-15 sp|A0MQH0|DICER_CRIGR Endoribonuclease Dicer OS=Cricetulus griseu... 83.6 4e-15 sp|Q6TUI4|DICER_BOVIN Endoribonuclease Dicer OS=Bos taurus OX=991... 83.6 4e-15 sp|Q8LMR2|DCL1_ORYSJ Endoribonuclease Dicer homolog 1 OS=Oryza sa... 83.2 5e-15 sp|Q7SCC1|DCL2_NEUCR Dicer-like protein 2 OS=Neurospora crassa (s... 83.2 5e-15 sp|Q25BN1|DICER_CHICK Endoribonuclease Dicer OS=Gallus gallus OX=... 82.4 8e-15 sp|P84634|DCL4_ARATH Dicer-like protein 4 OS=Arabidopsis thaliana... 82.4 9e-15 sp|Q9SP32|DCL1_ARATH Endoribonuclease Dicer homolog 1 OS=Arabidop... 82.4 1e-14 sp|Q9UPY3|DICER_HUMAN Endoribonuclease Dicer OS=Homo sapiens OX=9... 81.3 2e-14 sp|A2Q8R2|MPH1_ASPNC ATP-dependent DNA helicase mph1 OS=Aspergill... 80.9 2e-14 sp|Q2HG76|MPH1_CHAGB ATP-dependent DNA helicase MPH1 OS=Chaetomiu... 80.5 3e-14 sp|Q6TV19|DICER_DANRE Endoribonuclease Dicer OS=Danio rerio OX=79... 80.5 3e-14 sp|A7LFZ6|DCL4_ORYSJ Endoribonuclease Dicer homolog 4 OS=Oryza sa... 79.7 6e-14 sp|Q9HE09|MFH2_SCHPO Putative ATP-dependent DNA helicase fml2 OS=... 79.0 7e-14 sp|B3DLA6|DICER_XENTR Endoribonuclease Dicer OS=Xenopus tropicali... 79.3 8e-14 sp|Q7SDF3|MPH1_NEUCR ATP-dependent DNA helicase mph1 OS=Neurospor... 79.0 9e-14 sp|Q8BGE5|FANCM_MOUSE Fanconi anemia group M protein homolog OS=M... 78.6 2e-13 sp|Q3EBC8|DCL2_ARATH Endoribonuclease Dicer homolog 2 OS=Arabidop... 77.4 3e-13 sp|Q1DY43|MPH1_COCIM ATP-dependent DNA helicase MPH1 OS=Coccidioi... 75.5 9e-13 sp|A7EFH4|MPH1_SCLS1 ATP-dependent DNA helicase mph1 OS=Sclerotin... 75.1 1e-12 sp|Q8IYD8|FANCM_HUMAN Fanconi anemia group M protein OS=Homo sapi... 74.7 2e-12 sp|A6RIS1|MPH1_BOTFB ATP-dependent DNA helicase MPH1 OS=Botryotin... 73.6 4e-12 sp|A2QX45|DCL22_ASPNC Dicer-like protein 2-2 OS=Aspergillus niger... 71.2 2e-11 sp|I3XHK1|FANCM_ARATH DEAD-box ATP-dependent RNA helicase FANCM O... 70.5 3e-11 sp|Q6BRF0|MPH1_DEBHA ATP-dependent DNA helicase MPH1 OS=Debaryomy... 68.9 1e-10 sp|A1C9M6|DCL2_ASPCL Dicer-like protein 2 OS=Aspergillus clavatus... 68.2 2e-10 sp|Q10HL3|DCL2A_ORYSJ Endoribonuclease Dicer homolog 2a OS=Oryza ... 68.2 2e-10 sp|Q69LX2|DCL2B_ORYSJ Endoribonuclease Dicer homolog 2b OS=Oryza ... 68.2 2e-10 sp|Q0UL22|DCL2_PHANO Dicer-like protein 2 OS=Phaeosphaeria nodoru... 67.0 5e-10 sp|A3GH78|MPH1_PICST ATP-dependent DNA helicase MPH1 OS=Scheffers... 66.2 7e-10 sp|Q75AA7|MPH1_EREGS ATP-dependent DNA helicase MPH1 OS=Eremothec... 65.9 1e-09 sp|Q9VDA0|FANCM_DROME DEAD-box ATP-dependent DNA helicase Fancm O... 65.5 1e-09 sp|Q9LXW7|DCL3_ARATH Endoribonuclease Dicer homolog 3 OS=Arabidop... 64.7 2e-09 sp|Q6FPQ3|MPH1_CANGA ATP-dependent DNA helicase MPH1 OS=Candida g... 64.3 3e-09 sp|Q9VCU9|DCR1_DROME Endoribonuclease Dcr-1 OS=Drosophila melanog... 63.5 6e-09 sp|A0A1D5PRR9|FANCM_CHICK Fanconi anemia group M protein OS=Gallu... 63.2 8e-09 sp|A2R345|DCL21_ASPNC Dicer-like protein 2-1 OS=Aspergillus niger... 62.0 1e-08 sp|Q1DW80|DCL2_COCIM Dicer-like protein 2 OS=Coccidioides immitis... 62.0 2e-08 sp|A1ZAW0|DCR2_DROME Endoribonuclease Dcr-2 OS=Drosophila melanog... 61.2 3e-08 sp|A7TSV4|MPH1_VANPO ATP-dependent DNA helicase MPH1 OS=Vanderwal... 60.1 5e-08 sp|A6ZVS0|MPH1_YEAS7 ATP-dependent DNA helicase MPH1 OS=Saccharom... 59.7 7e-08 sp|P40562|MPH1_YEAST ATP-dependent DNA helicase MPH1 OS=Saccharom... 59.7 7e-08 sp|Q8GY84|RH10_ARATH DEAD-box ATP-dependent RNA helicase 10 OS=Ar... 56.6 4e-07 sp|Q6CB69|DED1_YARLI ATP-dependent RNA helicase DED1 OS=Yarrowia ... 56.6 6e-07 sp|A3LS22|RRP3_PICST ATP-dependent rRNA helicase RRP3 OS=Scheffer... 55.8 8e-07 sp|P96130|RECG_TREPA ATP-dependent DNA helicase RecG OS=Treponema... 55.8 1e-06 sp|Q0CIQ3|RRP3_ASPTN ATP-dependent rRNA helicase rrp3 OS=Aspergil... 55.1 1e-06 sp|A7TKR8|DED1_VANPO ATP-dependent RNA helicase DED1 OS=Vanderwal... 54.7 2e-06 sp|Q55804|CRHR_SYNY3 RNA helicase CrhR OS=Synechocystis sp. (stra... 54.3 3e-06 sp|Q4I7K4|DED1_GIBZE ATP-dependent RNA helicase DED1 OS=Gibberell... 54.3 3e-06 sp|Q54TJ4|DDX27_DICDI Probable ATP-dependent RNA helicase ddx27 O... 53.9 4e-06 sp|Q0UWA6|DED1_PHANO ATP-dependent RNA helicase DED1 OS=Phaeospha... 53.5 5e-06 sp|Q6CQX2|MPH1_KLULA ATP-dependent DNA helicase MPH1 OS=Kluyverom... 53.5 5e-06 sp|P0CR00|RRP3_CRYNJ ATP-dependent rRNA helicase RRP3 OS=Cryptoco... 53.1 6e-06 sp|P0CR01|RRP3_CRYNB ATP-dependent rRNA helicase RRP3 OS=Cryptoco... 53.1 6e-06 sp|P21507|SRMB_ECOLI ATP-dependent RNA helicase SrmB OS=Escherich... 53.1 6e-06 sp|Q6BQ61|RRP3_DEBHA ATP-dependent rRNA helicase RRP3 OS=Debaryom... 52.8 7e-06 sp|A6QRQ7|RRP3_AJECN ATP-dependent rRNA helicase RRP3 OS=Ajellomy... 52.8 8e-06 sp|Q54VT4|DDX47_DICDI Probable ATP-dependent RNA helicase ddx47 O... 52.8 9e-06 sp|A0A1D6LAB7|RH3B_MAIZE DEAD-box ATP-dependent RNA helicase 3B, ... 52.8 1e-05 sp|Q1E1N5|RRP3_COCIM ATP-dependent rRNA helicase RRP3 OS=Coccidio... 52.4 1e-05 sp|A5DQF1|RRP3_PICGU ATP-dependent rRNA helicase RRP3 OS=Meyerozy... 52.4 1e-05 sp|A0A1D6GDY8|RH3A_MAIZE DEAD-box ATP-dependent RNA helicase 3A, ... 52.8 1e-05 sp|Q6CH58|RRP3_YARLI ATP-dependent rRNA helicase RRP3 OS=Yarrowia... 52.4 1e-05 sp|Q2HBE7|DED1_CHAGB ATP-dependent RNA helicase DED1 OS=Chaetomiu... 52.4 1e-05 sp|A7EJY3|DED1_SCLS1 ATP-dependent RNA helicase ded1 OS=Sclerotin... 52.0 2e-05 sp|Q5JKF2|RH40_ORYSJ DEAD-box ATP-dependent RNA helicase 40 OS=Or... 52.0 2e-05 sp|Q0D8N0|RH53_ORYSJ DEAD-box ATP-dependent RNA helicase 53 OS=Or... 51.6 2e-05 sp|A6SEH9|DED1_BOTFB ATP-dependent RNA helicase ded1 OS=Botryotin... 51.6 2e-05 sp|Q9P6U9|DED1_NEUCR ATP-dependent RNA helicase ded1 OS=Neurospor... 51.6 2e-05 sp|A4RHF1|DED1_PYRO7 ATP-dependent RNA helicase DED1 OS=Pyricular... 51.6 2e-05 sp|Q4IFI0|RRP3_GIBZE ATP-dependent rRNA helicase RRP3 OS=Gibberel... 51.2 2e-05 sp|Q0DB53|RH52A_ORYSJ DEAD-box ATP-dependent RNA helicase 52A OS=... 51.2 2e-05 sp|A7EML8|RRP3_SCLS1 ATP-dependent rRNA helicase rrp3 OS=Scleroti... 51.2 3e-05 sp|Q5ACU6|RRP3_CANAL ATP-dependent rRNA helicase RRP3 OS=Candida ... 51.2 3e-05 sp|Q4P3U9|RRP3_USTMA ATP-dependent rRNA helicase RRP3 OS=Ustilago... 51.2 3e-05 sp|P19109|DDX17_DROME ATP-dependent RNA helicase p62 OS=Drosophil... 51.2 3e-05 sp|Q15N18|RHLB_PSEA6 ATP-dependent RNA helicase RhlB OS=Pseudoalt... 50.8 3e-05 sp|Q1DJF0|DED1_COCIM ATP-dependent RNA helicase DED1 OS=Coccidioi... 50.8 3e-05 sp|A6RW56|RRP3_BOTFB ATP-dependent rRNA helicase rrp3 OS=Botryoti... 50.8 3e-05 sp|A1CXK7|DED1_NEOFI ATP-dependent RNA helicase ded1 OS=Neosartor... 50.8 3e-05 sp|Q9LUW6|RH9_ARATH DEAD-box ATP-dependent RNA helicase 9, mitoch... 50.8 3e-05 sp|A2RB17|RRP3_ASPNC ATP-dependent rRNA helicase rrp3 OS=Aspergil... 50.4 4e-05 sp|Q9LUW5|RH53_ARATH DEAD-box ATP-dependent RNA helicase 53, mito... 50.4 4e-05 sp|A8F0V9|UVRB_RICM5 UvrABC system protein B OS=Rickettsia massil... 50.4 5e-05 sp|A8EXS6|UVRB_RICCK UvrABC system protein B OS=Rickettsia canade... 50.4 5e-05 sp|A2QI25|DED1_ASPNC ATP-dependent RNA helicase ded1 OS=Aspergill... 50.4 5e-05 sp|Q0CLJ6|DED1_ASPTN ATP-dependent RNA helicase ded1 OS=Aspergill... 50.4 5e-05 sp|P23394|PRP28_YEAST Pre-mRNA-splicing ATP-dependent RNA helicas... 50.1 5e-05 sp|Q2UGK3|DED1_ASPOR ATP-dependent RNA helicase ded1 OS=Aspergill... 50.1 6e-05 sp|Q0DM51|RH3_ORYSJ DEAD-box ATP-dependent RNA helicase 3, chloro... 50.1 6e-05 sp|Q9C551|RH5_ARATH DEAD-box ATP-dependent RNA helicase 5 OS=Arab... 49.7 7e-05 sp|C8V8H4|DED1_EMENI ATP-dependent RNA helicase ded1 OS=Emericell... 50.1 7e-05 sp|Q7L014|DDX46_HUMAN Probable ATP-dependent RNA helicase DDX46 O... 50.1 7e-05 sp|Q5R6D8|DDX46_PONAB Probable ATP-dependent RNA helicase DDX46 O... 50.1 7e-05 sp|Q569Z5|DDX46_MOUSE Probable ATP-dependent RNA helicase DDX46 O... 50.1 7e-05 sp|Q970I2|XPB2_SULTO DNA 3'-5' translocase XPB2 OS=Sulfurisphaera... 49.7 7e-05 sp|Q756G5|DBP8_EREGS ATP-dependent RNA helicase DBP8 OS=Eremothec... 49.3 7e-05 sp|Q9P6N8|RRP3_SCHPO ATP-dependent rRNA helicase rrp3 OS=Schizosa... 49.7 7e-05 sp|Q62780|DDX46_RAT Probable ATP-dependent RNA helicase DDX46 OS=... 50.1 7e-05 sp|Q84W89|RH37_ARATH DEAD-box ATP-dependent RNA helicase 37 OS=Ar... 49.7 8e-05 sp|A8GMJ1|UVRB_RICAH UvrABC system protein B OS=Rickettsia akari ... 49.7 9e-05 sp|Q6FM43|PRP28_CANGA Pre-mRNA-splicing ATP-dependent RNA helicas... 49.3 1e-04 sp|Q8DDN6|RHLB_VIBVU ATP-dependent RNA helicase RhlB OS=Vibrio vu... 48.9 1e-04 sp|P44586|DEAD_HAEIN ATP-dependent RNA helicase DeaD OS=Haemophil... 49.3 1e-04 sp|Q7MGP7|RHLB_VIBVY ATP-dependent RNA helicase RhlB OS=Vibrio vu... 48.9 1e-04 sp|Q8L7S8|RH3_ARATH DEAD-box ATP-dependent RNA helicase 3, chloro... 49.3 1e-04 sp|Q75HJ0|RH37_ORYSJ DEAD-box ATP-dependent RNA helicase 37 OS=Or... 48.9 1e-04 sp|Q65RG7|RHLB_MANSM ATP-dependent RNA helicase RhlB OS=Mannheimi... 48.5 1e-04 sp|A1CR32|RRP3_ASPCL ATP-dependent rRNA helicase rrp3 OS=Aspergil... 48.5 1e-04 sp|Q4PHU9|DBP2_USTMA ATP-dependent RNA helicase DBP2 OS=Ustilago ... 48.5 2e-04 sp|P06634|DED1_YEAST ATP-dependent RNA helicase DED1 OS=Saccharom... 48.5 2e-04 sp|A6ZP47|DED1_YEAS7 ATP-dependent RNA helicase DED1 OS=Saccharom... 48.5 2e-04 sp|Q6FNK8|RRP3_CANGA ATP-dependent rRNA helicase RRP3 OS=Candida ... 48.5 2e-04 sp|A1D405|RRP3_NEOFI ATP-dependent rRNA helicase rrp3 OS=Neosarto... 48.1 2e-04 sp|Q4WJE9|RRP3_ASPFU ATP-dependent rRNA helicase rrp3 OS=Aspergil... 48.1 2e-04 sp|Q4WP13|DED1_ASPFU ATP-dependent RNA helicase ded1 OS=Aspergill... 48.1 2e-04 sp|A5DQS0|DED1_PICGU ATP-dependent RNA helicase DED1 OS=Meyerozym... 48.1 2e-04 sp|Q4UKL6|UVRB_RICFE UvrABC system protein B OS=Rickettsia felis ... 48.1 2e-04 sp|Q9VHP0|DDX3_DROME ATP-dependent RNA helicase bel OS=Drosophila... 48.1 2e-04 sp|A1CH78|DED1_ASPCL ATP-dependent RNA helicase ded1 OS=Aspergill... 48.1 2e-04 sp|A3LP87|DBP8_PICST ATP-dependent RNA helicase DBP8 OS=Scheffers... 47.8 3e-04 sp|O25029|RHPA_HELPY DEAD-box ATP-dependent RNA helicase RhpA OS=... 47.8 3e-04 sp|Q7Y183|RH10_ORYSJ DEAD-box ATP-dependent RNA helicase 10 OS=Or... 47.8 3e-04 sp|A2XKG2|RH10_ORYSI DEAD-box ATP-dependent RNA helicase 10 OS=Or... 47.8 3e-04 sp|Q1RHI9|UVRB_RICBR UvrABC system protein B OS=Rickettsia bellii... 47.8 3e-04 sp|A8GV86|UVRB_RICB8 UvrABC system protein B OS=Rickettsia bellii... 47.8 3e-04 sp|Q6YS30|RH5_ORYSJ DEAD-box ATP-dependent RNA helicase 5 OS=Oryz... 47.8 3e-04 sp|Q0UN57|PRP5_PHANO Pre-mRNA-processing ATP-dependent RNA helica... 48.1 3e-04 sp|P44701|SRMB_HAEIN ATP-dependent RNA helicase SrmB OS=Haemophil... 47.4 3e-04 sp|P57453|DEAD_BUCAI ATP-dependent RNA helicase DeaD OS=Buchnera ... 47.8 3e-04 sp|B9XXL6|RHPA_HELP8 DEAD-box ATP-dependent RNA helicase RhpA OS=... 47.4 3e-04 sp|C4K0Z4|UVRB_RICPU UvrABC system protein B OS=Rickettsia peacoc... 47.8 4e-04 sp|C3PMP5|UVRB_RICAE UvrABC system protein B OS=Rickettsia africa... 47.8 4e-04 sp|A8GR53|UVRB_RICRS UvrABC system protein B OS=Rickettsia ricket... 47.4 4e-04 sp|B0BWK0|UVRB_RICRO UvrABC system protein B OS=Rickettsia ricket... 47.4 4e-04 sp|Q92J03|UVRB_RICCN UvrABC system protein B OS=Rickettsia conori... 47.4 4e-04 sp|A6ZSX1|RRP3_YEAS7 ATP-dependent rRNA helicase RRP3 OS=Saccharo... 47.4 4e-04 sp|Q6BU54|DED1_DEBHA ATP-dependent RNA helicase DED1 OS=Debaryomy... 47.4 4e-04 sp|Q1DHB2|PRP5_COCIM Pre-mRNA-processing ATP-dependent RNA helica... 47.8 4e-04 sp|Q4L3G0|MFD_STAHJ Transcription-repair-coupling factor OS=Staph... 47.4 4e-04 sp|Q4P733|DED1_USTMA ATP-dependent RNA helicase DED1 OS=Ustilago ... 47.4 4e-04 sp|Q6Z4K6|RH52B_ORYSJ DEAD-box ATP-dependent RNA helicase 52B OS=... 47.4 5e-04 sp|Q87KH5|RHLB_VIBPA ATP-dependent RNA helicase RhlB OS=Vibrio pa... 47.0 5e-04 sp|Q0ILZ4|RH9_ORYSJ DEAD-box ATP-dependent RNA helicase 9 OS=Oryz... 47.0 5e-04 sp|Q914K8|Y022_SIFVH Putative helicase 22 OS=Sulfolobus islandicu... 47.0 5e-04 sp|Q54CE0|DDX17_DICDI Probable ATP-dependent RNA helicase ddx17 O... 47.4 5e-04 sp|Q9DF35|DD21A_XENLA Nucleolar RNA helicase 2-A OS=Xenopus laevi... 47.0 5e-04 sp|Q0UK12|RRP3_PHANO ATP-dependent rRNA helicase RRP3 OS=Phaeosph... 47.0 5e-04 sp|Q6FP38|DBP1_CANGA ATP-dependent RNA helicase DBP1 OS=Candida g... 47.0 6e-04 sp|Q2JN87|UVRB_SYNJB UvrABC system protein B OS=Synechococcus sp.... 47.0 6e-04 sp|P38712|RRP3_YEAST ATP-dependent rRNA helicase RRP3 OS=Saccharo... 46.6 6e-04 sp|P33906|DEAD_KLEPN ATP-dependent RNA helicase DeaD OS=Klebsiell... 46.6 6e-04 sp|Q8XA87|DEAD_ECO57 ATP-dependent RNA helicase DeaD OS=Escherich... 46.6 7e-04 sp|P0A9P8|DEAD_SHIFL ATP-dependent RNA helicase DeaD OS=Shigella ... 46.6 7e-04 sp|P0A9P6|DEAD_ECOLI ATP-dependent RNA helicase DeaD OS=Escherich... 46.6 7e-04 sp|P0A9P7|DEAD_ECOL6 ATP-dependent RNA helicase DeaD OS=Escherich... 46.6 7e-04 sp|Q7RY59|RRP3_NEUCR ATP-dependent rRNA helicase rrp-3 OS=Neurosp... 46.6 7e-04 sp|A5E0U9|DBP8_LODEL ATP-dependent RNA helicase DBP8 OS=Lodderomy... 46.2 7e-04 sp|Q6CLR3|DED1_KLULA ATP-dependent RNA helicase DED1 OS=Kluyverom... 46.6 8e-04 sp|Q9VIF6|DDX47_DROME ATP-dependent RNA helicase DDX47 OS=Drosoph... 46.2 8e-04 sp|Q96GQ7|DDX27_HUMAN Probable ATP-dependent RNA helicase DDX27 O... 46.6 8e-04 sp|A6R3L3|DED1_AJECN ATP-dependent RNA helicase DED1 OS=Ajellomyc... 46.6 8e-04 sp|A4STJ7|RHLB_AERS4 ATP-dependent RNA helicase RhlB OS=Aeromonas... 46.2 8e-04 sp|Q1DZK8|DBP3_COCIM ATP-dependent RNA helicase DBP3 OS=Coccidioi... 46.2 8e-04 sp|O13370|DED1_SCHPO ATP-dependent RNA helicase ded1 OS=Schizosac... 46.6 8e-04 sp|Q4A127|HSDR_STAS1 Type I restriction enzyme SsaAORF53P endonuc... 46.6 8e-04 sp|Q89AF9|DEAD_BUCBP ATP-dependent RNA helicase DeaD OS=Buchnera ... 46.2 8e-04 sp|Q4E162|IF4A_TRYCC Probable eukaryotic initiation factor 4A OS=... 45.8 9e-04 sp|Q2UNB7|RRP3_ASPOR ATP-dependent rRNA helicase rrp3 OS=Aspergil... 46.2 9e-04 sp|Q6CXW0|DBP8_KLULA ATP-dependent RNA helicase DBP8 OS=Kluyverom... 45.8 0.001 sp|Q75EW9|RRP3_EREGS ATP-dependent rRNA helicase RRP3 OS=Eremothe... 45.8 0.001 sp|A1A4H6|DDX27_BOVIN Probable ATP-dependent RNA helicase DDX27 O... 46.2 0.001 sp|Q07736|T1RA_ECOLX Type I restriction enzyme EcoAI endonuclease... 46.2 0.001 sp|Q59PR3|DBP8_CANAL ATP-dependent RNA helicase DBP8 OS=Candida a... 45.8 0.001 sp|Q5A4E2|DED1_CANAL ATP-dependent RNA helicase DED1 OS=Candida a... 45.8 0.001 sp|C4K8M8|RHLB_HAMD5 ATP-dependent RNA helicase RhlB OS=Hamiltone... 45.4 0.001 sp|Q9ZDW2|UVRB_RICPR UvrABC system protein B OS=Rickettsia prowaz... 45.8 0.001 sp|P09052|VASA1_DROME ATP-dependent RNA helicase vasa OS=Drosophi... 45.8 0.001 sp|B7VME9|RHLB_VIBA3 ATP-dependent RNA helicase RhlB OS=Vibrio at... 45.4 0.001 sp|Q9H0S4|DDX47_HUMAN Probable ATP-dependent RNA helicase DDX47 O... 45.4 0.001 sp|Q8LA13|RH11_ARATH DEAD-box ATP-dependent RNA helicase 11 OS=Ar... 45.8 0.001 sp|Q5VQL1|RH14_ORYSJ DEAD-box ATP-dependent RNA helicase 14 OS=Or... 45.8 0.001 sp|B5FF87|RHLB_ALIFM ATP-dependent RNA helicase RhlB OS=Aliivibri... 45.4 0.001 sp|Q6CT85|RRP3_KLULA ATP-dependent rRNA helicase RRP3 OS=Kluyvero... 45.4 0.001 sp|Q5HJH8|HSDR_STAAC Type I restriction enzyme SauCOLORF180P endo... 45.8 0.001 sp|Q2R1M8|RH52C_ORYSJ DEAD-box ATP-dependent RNA helicase 52C OS=... 45.8 0.001 sp|Q5E8U5|RHLB_ALIF1 ATP-dependent RNA helicase RhlB OS=Aliivibri... 45.4 0.001 sp|Q9CWX9|DDX47_MOUSE Probable ATP-dependent RNA helicase DDX47 O... 45.4 0.001 sp|A4RK80|PRP28_PYRO7 Pre-mRNA-splicing ATP-dependent RNA helicas... 45.4 0.001 sp|Q6CCZ1|PRP5_YARLI Pre-mRNA-processing ATP-dependent RNA helica... 45.8 0.001 sp|D0PV95|DDX3_CAEEL ATP-dependent RNA helicase laf-1 OS=Caenorha... 45.4 0.002 sp|Q09903|DRS1_SCHPO ATP-dependent RNA helicase drs1 OS=Schizosac... 45.4 0.002 sp|Q29S22|DDX47_BOVIN Probable ATP-dependent RNA helicase DDX47 O... 45.4 0.002 sp|A7MXT4|RHLB_VIBC1 ATP-dependent RNA helicase RhlB OS=Vibrio ca... 45.1 0.002 sp|C4LB49|RHLB_TOLAT ATP-dependent RNA helicase RhlB OS=Tolumonas... 45.1 0.002 sp|Q2JRR3|UVRB_SYNJA UvrABC system protein B OS=Synechococcus sp.... 45.4 0.002 sp|P0CQ79|DBP3_CRYNB ATP-dependent RNA helicase DBP3 OS=Cryptococ... 45.4 0.002 sp|Q81IT9|CSHA_BACCR DEAD-box ATP-dependent RNA helicase CshA OS=... 45.4 0.002 sp|Q2H1Q8|RRP3_CHAGB ATP-dependent rRNA helicase RRP3 OS=Chaetomi... 45.1 0.002 sp|Q6BPT8|DBP6_DEBHA ATP-dependent RNA helicase DBP6 OS=Debaryomy... 45.4 0.002 sp|Q9DF36|DD21B_XENLA Nucleolar RNA helicase 2-B OS=Xenopus laevi... 45.4 0.002 sp|A0KEG9|RHLB_AERHH ATP-dependent RNA helicase RhlB OS=Aeromonas... 45.1 0.002 sp|Q4TVV3|DDX46_DANRE Probable ATP-dependent RNA helicase DDX46 O... 45.4 0.002 sp|A7TS37|RRP3_VANPO ATP-dependent rRNA helicase RRP3 OS=Vanderwa... 45.1 0.002 sp|P34580|DDX47_CAEEL Putative ATP-dependent RNA helicase T26G10.... 45.1 0.002 sp|Q7SBC6|DBP2_NEUCR ATP-dependent RNA helicase dbp2 OS=Neurospor... 45.1 0.002 sp|Q6HPE6|CSHA_BACHK DEAD-box ATP-dependent RNA helicase CshA OS=... 45.1 0.002 sp|Q81VG0|CSHA_BACAN DEAD-box ATP-dependent RNA helicase CshA OS=... 45.1 0.002 sp|A0R8U6|CSHA_BACAH DEAD-box ATP-dependent RNA helicase CshA OS=... 45.1 0.002 sp|P0CQ78|DBP3_CRYNJ ATP-dependent RNA helicase DBP3 OS=Cryptococ... 45.1 0.002 sp|Q68XG5|UVRB_RICTY UvrABC system protein B OS=Rickettsia typhi ... 45.1 0.002 sp|A3LQ01|DED1_PICST ATP-dependent RNA helicase DED1 OS=Scheffers... 45.1 0.002 sp|P24783|DBP2_YEAST ATP-dependent RNA helicase DBP2 OS=Saccharom... 45.1 0.002 sp|Q75B50|DED1_EREGS ATP-dependent RNA helicase DED1 OS=Eremothec... 45.1 0.002 sp|A6ZRX0|DBP2_YEAS7 ATP-dependent RNA helicase DBP2 OS=Saccharom... 45.1 0.002 sp|Q59W52|PRP28_CANAL Pre-mRNA-splicing ATP-dependent RNA helicas... 45.1 0.002 sp|Q63GX5|CSHA_BACCZ DEAD-box ATP-dependent RNA helicase CshA OS=... 44.7 0.002 sp|Q465R3|HELS_METBF ATP-dependent DNA helicase Hel308 OS=Methano... 45.1 0.002 sp|Q0I1X0|RHLB_HISS1 ATP-dependent RNA helicase RhlB OS=Histophil... 44.7 0.002 sp|Q8CMT1|MFD_STAES Transcription-repair-coupling factor OS=Staph... 45.1 0.002 sp|P16381|DDX3L_MOUSE Putative ATP-dependent RNA helicase Pl10 OS... 44.7 0.003 sp|Q7SEL0|PRP28_NEUCR Pre-mRNA-splicing ATP-dependent RNA helicas... 44.7 0.003 sp|Q6FLF3|DBP2_CANGA ATP-dependent RNA helicase DBP2 OS=Candida g... 44.7 0.003 sp|B0UUZ9|RHLB_HISS2 ATP-dependent RNA helicase RhlB OS=Histophil... 44.3 0.003 sp|Q5AWA6|DBP3_EMENI ATP-dependent RNA helicase dbp3 OS=Emericell... 44.3 0.003 sp|Q9P7C7|PRP11_SCHPO Pre-mRNA-processing ATP-dependent RNA helic... 44.7 0.003 sp|Q6DRI7|DDX51_DANRE ATP-dependent RNA helicase DDX51 OS=Danio r... 44.7 0.003 sp|Q4PFD9|PRP5_USTMA Pre-mRNA-processing ATP-dependent RNA helica... 44.7 0.003 sp|C3LQR1|RHLB_VIBCM ATP-dependent RNA helicase RhlB OS=Vibrio ch... 44.3 0.003 sp|Q9KV52|RHLB_VIBCH ATP-dependent RNA helicase RhlB OS=Vibrio ch... 44.3 0.003 sp|A5F3R4|RHLB_VIBC3 ATP-dependent RNA helicase RhlB OS=Vibrio ch... 44.3 0.003 sp|Q4X195|DBP2_ASPFU ATP-dependent RNA helicase dbp2 OS=Aspergill... 44.3 0.003 sp|Q7V9M1|UVRB_PROMA UvrABC system protein B OS=Prochlorococcus m... 44.7 0.003 sp|A6VKC3|RHLB_ACTSZ ATP-dependent RNA helicase RhlB OS=Actinobac... 44.3 0.003 sp|A5DZE6|DED1_LODEL ATP-dependent RNA helicase DED1 OS=Lodderomy... 44.3 0.003 sp|Q7A801|HSDR_STAAN Type I restriction enzyme SauN315I endonucle... 44.7 0.003 sp|Q99X26|HSDR_STAAM Type I restriction enzyme SauMu50ORF195P end... 44.7 0.003 sp|A5UNK6|UVRB_METS3 UvrABC system protein B OS=Methanobrevibacte... 44.3 0.004 sp|Q5QMN3|RH20_ORYSJ DEAD-box ATP-dependent RNA helicase 20 OS=Or... 44.3 0.004 sp|A4RGD1|RRP3_PYRO7 ATP-dependent rRNA helicase RRP3 OS=Pyricula... 44.3 0.004 sp|Q6C4D4|DBP2_YARLI ATP-dependent RNA helicase DBP2 OS=Yarrowia ... 44.3 0.004 sp|Q5HIH2|MFD_STAAC Transcription-repair-coupling factor OS=Staph... 44.3 0.004 sp|Q8NXZ6|MFD_STAAW Transcription-repair-coupling factor OS=Staph... 44.3 0.004 sp|Q6GBY5|MFD_STAAS Transcription-repair-coupling factor OS=Staph... 44.3 0.004 sp|Q2G0R8|MFD_STAA8 Transcription-repair-coupling factor OS=Staph... 44.3 0.004 sp|Q2FJD8|MFD_STAA3 Transcription-repair-coupling factor OS=Staph... 44.3 0.004 sp|Q6GJG8|MFD_STAAR Transcription-repair-coupling factor OS=Staph... 44.3 0.004 sp|Q7A7B2|MFD_STAAN Transcription-repair-coupling factor OS=Staph... 44.3 0.004 sp|Q99WA0|MFD_STAAM Transcription-repair-coupling factor OS=Staph... 44.3 0.004 sp|Q8NYL9|HSDR_STAAW Type I restriction enzyme SauMW2ORF169P endo... 44.3 0.004 sp|Q6GCT1|HSDR_STAAS Type I restriction enzyme SauMSSORF170P endo... 44.3 0.004 sp|Q2YVY2|MFD_STAAB Transcription-repair-coupling factor OS=Staph... 44.3 0.004 sp|Q6GKB1|HSDR_STAAR Type I restriction enzyme SauMRSORF196P endo... 44.3 0.004 sp|Q8Y8N0|CSHA_LISMO ATP-dependent RNA helicase CshA OS=Listeria ... 43.9 0.004 sp|P21693|DBPA_ECOLI ATP-dependent RNA helicase DbpA OS=Escherich... 43.9 0.004 sp|Q8K9H6|DEAD_BUCAP ATP-dependent RNA helicase DeaD OS=Buchnera ... 43.9 0.004 sp|Q6FQZ0|DBP8_CANGA ATP-dependent RNA helicase DBP8 OS=Candida g... 43.9 0.004 sp|Q6BGU8|DBP8_DEBHA ATP-dependent RNA helicase DBP8 OS=Debaryomy... 43.9 0.004 sp|Q73EU1|CSHA_BACC1 DEAD-box ATP-dependent RNA helicase CshA OS=... 43.9 0.005 sp|C5CFR8|UVRB_KOSOT UvrABC system protein B OS=Kosmotoga olearia... 43.9 0.005 sp|Q4P184|FAL1_USTMA ATP-dependent RNA helicase FAL1 OS=Ustilago ... 43.5 0.005 sp|Q4PEX7|DBP8_USTMA ATP-dependent RNA helicase DBP8 OS=Ustilago ... 43.9 0.005 sp|O62591|IF4A_LEIMA Probable eukaryotic initiation factor 4A OS=... 43.5 0.005 sp|A4HRK0|IF4A_LEIIN Probable eukaryotic initiation factor 4A OS=... 43.5 0.005 sp|A7TK63|DBP8_VANPO ATP-dependent RNA helicase DBP8 OS=Vanderwal... 43.5 0.005 sp|P0DMI1|HELS_ARCFU ATP-dependent DNA helicase Hel308 OS=Archaeo... 43.9 0.005 sp|Q25225|IF4A_LEIBR Probable eukaryotic initiation factor 4A OS=... 43.5 0.005 sp|P0CQ74|DED1_CRYNJ ATP-dependent RNA helicase ded1 OS=Cryptococ... 43.9 0.005 sp|P0CQ75|DED1_CRYNB ATP-dependent RNA helicase ded1 OS=Cryptococ... 43.9 0.005 sp|Q47281|T1RE_ECOLX Type I restriction enzyme EcoEI endonuclease... 43.9 0.005 sp|Q9Z6C9|CSHA_LIMRT ATP-dependent RNA helicase CshA OS=Limosilac... 43.5 0.005 sp|Q9M2F9|RH52_ARATH DEAD-box ATP-dependent RNA helicase 52 OS=Ar... 43.9 0.005 sp|Q2H720|DBP2_CHAGB ATP-dependent RNA helicase DBP2 OS=Chaetomiu... 43.9 0.005 sp|Q5HGK6|RECG_STAAC ATP-dependent DNA helicase RecG OS=Staphyloc... 43.9 0.005 sp|O50581|RECG_STAA8 ATP-dependent DNA helicase RecG OS=Staphyloc... 43.9 0.005 sp|Q6CIV2|DBP2_KLULA ATP-dependent RNA helicase DBP2 OS=Kluyverom... 43.9 0.005 sp|P42305|DBPA_BACSU ATP-dependent RNA helicase DbpA OS=Bacillus ... 43.5 0.005 sp|Q9ZB21|UVRB_MYCPL UvrABC system protein B OS=Mycoplasmopsis pu... 43.9 0.005 sp|B3PLX9|UVRB_META1 UvrABC system protein B OS=Metamycoplasma ar... 43.9 0.005 sp|Q6BTL5|DRS1_DEBHA ATP-dependent RNA helicase DRS1 OS=Debaryomy... 43.9 0.005 sp|Q5RF43|DDX3Y_PONAB ATP-dependent RNA helicase DDX3Y OS=Pongo a... 43.9 0.005 sp|Q12WZ6|HELS_METBU ATP-dependent DNA helicase Hel308 OS=Methano... 43.9 0.006 sp|O00571|DDX3X_HUMAN ATP-dependent RNA helicase DDX3X OS=Homo sa... 43.9 0.006 sp|Q62167|DDX3X_MOUSE ATP-dependent RNA helicase DDX3X OS=Mus mus... 43.5 0.006 sp|Q8PZR7|HELS_METMA ATP-dependent DNA helicase Hel308 OS=Methano... 43.9 0.006 sp|O15523|DDX3Y_HUMAN ATP-dependent RNA helicase DDX3Y OS=Homo sa... 43.5 0.006 sp|Q5HRQ2|MFD_STAEQ Transcription-repair-coupling factor OS=Staph... 43.9 0.006 sp|Q8TL39|HELS_METAC ATP-dependent DNA helicase Hel308 OS=Methano... 43.5 0.006 sp|Q9K6X9|UVRB_HALH5 UvrABC system protein B OS=Halalkalibacteriu... 43.5 0.006 sp|Q8Y7M8|DBPA_LISMO ATP-dependent RNA helicase DbpA OS=Listeria ... 43.5 0.006 sp|P54509|YQHH_BACSU Uncharacterized ATP-dependent helicase YqhH ... 43.5 0.006 sp|Q8TFK8|DED1_CANGA ATP-dependent RNA helicase DED1 OS=Candida g... 43.5 0.007 sp|Q6GVM6|DDX3Y_PANTR ATP-dependent RNA helicase DDX3Y OS=Pan tro... 43.5 0.007 sp|A5DF03|PRP28_PICGU Pre-mRNA-splicing ATP-dependent RNA helicas... 43.5 0.007 sp|P0A4D8|CSHA_STRR6 DEAD-box ATP-dependent RNA helicase CshA OS=... 43.1 0.007 sp|P0A4D7|CSHA_STRPN DEAD-box ATP-dependent RNA helicase CshA OS=... 43.1 0.007 sp|Q7SH33|PRP5_NEUCR Pre-mRNA-processing ATP-dependent RNA helica... 43.5 0.007 sp|Q58969|Y1574_METJA Uncharacterized ATP-dependent helicase MJ15... 43.5 0.007 sp|P58174|UVRB_MYCPU UvrABC system protein B OS=Mycoplasmopsis pu... 43.1 0.008 sp|A6RJA2|PRP28_BOTFB Pre-mRNA-splicing ATP-dependent RNA helicas... 43.5 0.008 sp|A7IB61|HELS_METB6 ATP-dependent DNA helicase Hel308 OS=Methano... 43.1 0.008 sp|Q55BR9|DDX49_DICDI Probable ATP-dependent RNA helicase ddx49 O... 43.1 0.008 sp|B9KH59|UVRB_ANAMF UvrABC system protein B OS=Anaplasma margina... 43.1 0.008 sp|Q5U526|I4A3A_XENLA Eukaryotic initiation factor 4A-III-A OS=Xe... 42.7 0.008 sp|Q5P9H3|UVRB_ANAMM UvrABC system protein B OS=Anaplasma margina... 43.1 0.008 sp|C6DHF5|RHLB_PECCP ATP-dependent RNA helicase RhlB OS=Pectobact... 42.7 0.008 sp|Q5ZM36|IF4A3_CHICK Eukaryotic initiation factor 4A-III OS=Gall... 42.7 0.009 sp|B7ZTW1|IF4A3_XENTR Eukaryotic initiation factor 4A-III OS=Xeno... 42.7 0.009 sp|A1DGZ7|DBP2_NEOFI ATP-dependent RNA helicase dbp2 OS=Neosartor... 43.1 0.009 sp|Q8N8A6|DDX51_HUMAN ATP-dependent RNA helicase DDX51 OS=Homo sa... 43.1 0.009 sp|Q9C718|RH20_ARATH DEAD-box ATP-dependent RNA helicase 20 OS=Ar... 43.1 0.009 sp|B5FZY7|IF4A3_TAEGU Eukaryotic initiation factor 4A-III OS=Taen... 42.7 0.009 sp|B5DG42|IF4A3_SALSA Eukaryotic initiation factor 4A-III OS=Salm... 42.7 0.009 sp|O42226|I4A3B_XENLA Eukaryotic initiation factor 4A-III-B OS=Xe... 42.7 0.009 sp|Q91VC3|IF4A3_MOUSE Eukaryotic initiation factor 4A-III OS=Mus ... 42.7 0.009 sp|Q6C024|PRP28_YARLI Pre-mRNA-splicing ATP-dependent RNA helicas... 43.1 0.009 sp|Q2GID5|UVRB_ANAPZ UvrABC system protein B OS=Anaplasma phagocy... 43.1 0.009 sp|Q54IV3|DDX42_DICDI Probable ATP-dependent RNA helicase ddx42 O... 43.1 0.009 sp|Q3B8Q2|IF4A3_RAT Eukaryotic initiation factor 4A-III OS=Rattus... 42.7 0.009 sp|A6M931|IF4A3_PIG Eukaryotic initiation factor 4A-III OS=Sus sc... 42.7 0.009 sp|Q2NL22|IF4A3_BOVIN Eukaryotic initiation factor 4A-III OS=Bos ... 42.7 0.009 sp|Q4R3Q1|IF4A3_MACFA Eukaryotic initiation factor 4A-III OS=Maca... 42.7 0.010 sp|P38919|IF4A3_HUMAN Eukaryotic initiation factor 4A-III OS=Homo... 42.7 0.010 sp|A1CQA9|PRP5_ASPCL Pre-mRNA-processing ATP-dependent RNA helica... 43.1 0.010 sp|Q755A5|DBP3_EREGS ATP-dependent RNA helicase DBP3 OS=Eremothec... 42.7 0.010 sp|Q8H136|RH14_ARATH DEAD-box ATP-dependent RNA helicase 14 OS=Ar... 42.7 0.010 sp|Q0DLB9|RH17_ORYSJ DEAD-box ATP-dependent RNA helicase 17 OS=Or... 42.7 0.011 sp|O22907|RH24_ARATH DEAD-box ATP-dependent RNA helicase 24 OS=Ar... 42.7 0.011 sp|Q553B1|DDX46_DICDI ATP-dependent RNA helicase ddx46 OS=Dictyos... 42.7 0.011 sp|Q6C9P3|DBP3_YARLI ATP-dependent RNA helicase DBP3 OS=Yarrowia ... 42.4 0.012 sp|A5DDF4|PRP5_PICGU Pre-mRNA-processing ATP-dependent RNA helica... 42.7 0.013 sp|Q59LU0|DBP2_CANAL ATP-dependent RNA helicase DBP2 OS=Candida a... 42.4 0.013 sp|Q814I2|DBPA_BACCR ATP-dependent RNA helicase DbpA OS=Bacillus ... 42.4 0.013 sp|Q0U6X2|MAK5_PHANO ATP-dependent RNA helicase MAK5 OS=Phaeospha... 42.7 0.013 sp|Q1DMX8|PRP28_COCIM Pre-mRNA-splicing ATP-dependent RNA helicas... 42.7 0.013 sp|G0SFM2|DBP2_CHATD ATP-dependent RNA helicase DBP2 OS=Chaetomiu... 42.4 0.013 sp|A3LQ55|PRP5_PICST Pre-mRNA-processing ATP-dependent RNA helica... 42.7 0.013 sp|Q2HAD8|PRP5_CHAGB Pre-mRNA-processing ATP-dependent RNA helica... 42.7 0.013 sp|P9WH05|DEAD_MYCTU ATP-dependent RNA helicase DeaD OS=Mycobacte... 42.4 0.014 sp|P9WH04|DEAD_MYCTO ATP-dependent RNA helicase DeaD OS=Mycobacte... 42.4 0.014 sp|A7EGG4|PRP28_SCLS1 Pre-mRNA-splicing ATP-dependent RNA helicas... 42.4 0.014 sp|Q6CJU1|DBP5_KLULA ATP-dependent RNA helicase DBP5 OS=Kluyverom... 42.4 0.014 sp|P34689|GLH1_CAEEL ATP-dependent RNA helicase glh-1 OS=Caenorha... 42.4 0.014 sp|Q84UQ1|RH42_ORYSJ DEAD-box ATP-dependent RNA helicase 42 OS=Or... 42.7 0.014 sp|Q09719|DBP10_SCHPO ATP-dependent RNA helicase dbp10 OS=Schizos... 42.4 0.014 sp|O94761|RECQ4_HUMAN ATP-dependent DNA helicase Q4 OS=Homo sapie... 42.7 0.015 sp|Q5B3H7|DBP8_EMENI ATP-dependent RNA helicase dbp8 OS=Emericell... 42.4 0.015 sp|Q6H874|RH47A_ORYSJ DEAD-box ATP-dependent RNA helicase 47A OS=... 42.4 0.015 sp|Q2YUH3|CSHA_STAAB DEAD-box ATP-dependent RNA helicase CshA OS=... 42.4 0.015 sp|P24346|DDX3_XENLA Putative ATP-dependent RNA helicase an3 OS=X... 42.4 0.015 sp|P37474|MFD_BACSU Transcription-repair-coupling factor OS=Bacil... 42.4 0.015 sp|Q755N4|DBP2_EREGS ATP-dependent RNA helicase DBP2 OS=Eremothec... 42.4 0.015 sp|Q9ZRZ8|RH28_ARATH DEAD-box ATP-dependent RNA helicase 28 OS=Ar... 42.4 0.015 sp|Q6CZD9|RHLB_PECAS ATP-dependent RNA helicase RhlB OS=Pectobact... 42.0 0.016 sp|Q5HPW4|RECG_STAEQ ATP-dependent DNA helicase RecG OS=Staphyloc... 42.4 0.016 sp|Q0V1Z7|DRS1_PHANO ATP-dependent RNA helicase DRS1 OS=Phaeospha... 42.4 0.016 sp|A4R8G3|DBP8_PYRO7 ATP-dependent RNA helicase DBP8 OS=Pyricular... 42.4 0.016 sp|Q5B5E7|RRP3_EMENI ATP-dependent rRNA helicase rrp3 OS=Emericel... 42.0 0.016 sp|A3LSN3|DRS1_PICST ATP-dependent RNA helicase DRS1 OS=Scheffers... 42.4 0.016 sp|Q6GEZ3|CSHA_STAAR DEAD-box ATP-dependent RNA helicase CshA OS=... 42.0 0.017 sp|A4RN46|PRP5_PYRO7 Pre-mRNA-processing ATP-dependent RNA helica... 42.4 0.017 sp|Q7A0D2|CSHA_STAAW DEAD-box ATP-dependent RNA helicase CshA OS=... 42.0 0.017 sp|Q6G7M9|CSHA_STAAS DEAD-box ATP-dependent RNA helicase CshA OS=... 42.0 0.017 sp|Q7A4G0|CSHA_STAAN DEAD-box ATP-dependent RNA helicase CshA OS=... 42.0 0.017 sp|Q99SH6|CSHA_STAAM DEAD-box ATP-dependent RNA helicase CshA OS=... 42.0 0.017 sp|Q5HEB9|CSHA_STAAC DEAD-box ATP-dependent RNA helicase CshA OS=... 42.0 0.017 sp|Q2FWH5|CSHA_STAA8 DEAD-box ATP-dependent RNA helicase CshA OS=... 42.0 0.017 sp|Q2FF45|CSHA_STAA3 DEAD-box ATP-dependent RNA helicase CshA OS=... 42.0 0.017 sp|Q9QY16|DDX25_RAT ATP-dependent RNA helicase DDX25 OS=Rattus no... 42.0 0.017 sp|Q2U2J6|PRP5_ASPOR Pre-mRNA-processing ATP-dependent RNA helica... 42.4 0.017 sp|Q10PV9|RH47B_ORYSJ DEAD-box ATP-dependent RNA helicase 47B OS=... 42.0 0.018 sp|Q98I01|UVRB_RHILO UvrABC system protein B OS=Mesorhizobium jap... 42.4 0.018 sp|Q4WEB4|FAL1_ASPFU ATP-dependent RNA helicase fal1 OS=Aspergill... 42.0 0.018 sp|Q9QY15|DDX25_MOUSE ATP-dependent RNA helicase DDX25 OS=Mus mus... 42.0 0.018 sp|O51568|MFD_BORBU Transcription-repair-coupling factor OS=Borre... 42.4 0.018 sp|Q38F76|IF4A_TRYB2 Probable eukaryotic initiation factor 4A OS=... 41.6 0.018 sp|A1C595|FAL1_ASPCL ATP-dependent RNA helicase fal1 OS=Aspergill... 41.6 0.018 sp|Q6C799|DBP8_YARLI ATP-dependent RNA helicase DBP8 OS=Yarrowia ... 42.0 0.019 sp|Q6P9R1|DDX51_MOUSE ATP-dependent RNA helicase DDX51 OS=Mus mus... 42.0 0.019 sp|Q5AUL4|FAL1_EMENI ATP-dependent RNA helicase fal1 OS=Emericell... 41.6 0.019 sp|Q4IAA0|FAL1_GIBZE ATP-dependent RNA helicase FAL1 OS=Gibberell... 41.6 0.019 sp|Q0CAS8|FAL1_ASPTN ATP-dependent RNA helicase fal1 OS=Aspergill... 41.6 0.019 sp|Q8NX11|RECG_STAAW ATP-dependent DNA helicase RecG OS=Staphyloc... 42.0 0.019 sp|Q6G9Y6|RECG_STAAS ATP-dependent DNA helicase RecG OS=Staphyloc... 42.0 0.019 sp|P64325|RECG_STAAN ATP-dependent DNA helicase RecG OS=Staphyloc... 42.0 0.019 sp|P64324|RECG_STAAM ATP-dependent DNA helicase RecG OS=Staphyloc... 42.0 0.019 sp|Q2UAK1|FAL1_ASPOR ATP-dependent RNA helicase fal1 OS=Aspergill... 41.6 0.019 sp|A5AAE5|FAL1_ASPNC ATP-dependent RNA helicase fal1 OS=Aspergill... 41.6 0.019 sp|Q6GHK8|RECG_STAAR ATP-dependent DNA helicase RecG OS=Staphyloc... 42.0 0.019 sp|A1C6C4|DBP2_ASPCL ATP-dependent RNA helicase dbp2 OS=Aspergill... 42.0 0.019 sp|A1D071|FAL1_NEOFI ATP-dependent RNA helicase fal1 OS=Neosartor... 41.6 0.020 sp|Q8SR63|RRP3_ENCCU ATP-dependent rRNA helicase RRP3 OS=Encephal... 41.6 0.020 sp|Q99MJ9|DDX50_MOUSE ATP-dependent RNA helicase DDX50 OS=Mus mus... 42.0 0.021 sp|P0C2N8|DRS1_NEUCR ATP-dependent RNA helicase drs1 OS=Neurospor... 42.0 0.021 sp|P0CQ88|PRP28_CRYNJ Pre-mRNA-splicing ATP-dependent RNA helicas... 42.0 0.022 sp|P0CQ89|PRP28_CRYNB Pre-mRNA-splicing ATP-dependent RNA helicas... 42.0 0.022 sp|Q8YXS9|UVRB_NOSS1 UvrABC system protein B OS=Nostoc sp. (strai... 42.0 0.022 sp|P54475|CSHB_BACSU DEAD-box ATP-dependent RNA helicase CshB OS=... 41.6 0.022 sp|Q0INC5|RH28_ORYSJ DEAD-box ATP-dependent RNA helicase 28 OS=Or... 42.0 0.022 sp|Q56998|UVRB_ZYMMO UvrABC system protein B OS=Zymomonas mobilis... 41.6 0.023 sp|Q2TBP1|DDX25_BOVIN ATP-dependent RNA helicase DDX25 OS=Bos tau... 41.6 0.023 sp|Q9LYJ9|RH46_ARATH DEAD-box ATP-dependent RNA helicase 46 OS=Ar... 41.6 0.023 sp|Q966L9|GLH2_CAEEL ATP-dependent RNA helicase glh-2 OS=Caenorha... 42.0 0.023 sp|Q2NQB2|RHLB_SODGM ATP-dependent RNA helicase RhlB OS=Sodalis g... 41.6 0.024 sp|A8GZJ0|RHLB_SHEPA ATP-dependent RNA helicase RhlB OS=Shewanell... 41.6 0.024 sp|Q55750|MFD_SYNY3 Transcription-repair-coupling factor OS=Synec... 42.0 0.024 sp|Q6CT49|PRP28_KLULA Pre-mRNA-splicing ATP-dependent RNA helicas... 41.6 0.024 sp|Q0UY62|DBP3_PHANO ATP-dependent RNA helicase DBP3 OS=Phaeospha... 41.6 0.024 sp|P46942|DB10_NICSY ATP-dependent RNA helicase-like protein DB10... 41.6 0.025 sp|Q7ZY47|DDX42_XENLA ATP-dependent RNA helicase DDX42 OS=Xenopus... 41.6 0.025 sp|Q9BQ39|DDX50_HUMAN ATP-dependent RNA helicase DDX50 OS=Homo sa... 41.6 0.025 sp|P24784|DBP1_YEAST ATP-dependent RNA helicase DBP1 OS=Saccharom... 41.6 0.025 sp|P0CQ90|MAK5_CRYNJ ATP-dependent RNA helicase MAK5 OS=Cryptococ... 41.6 0.025 sp|B0TJ29|RHLB_SHEHH ATP-dependent RNA helicase RhlB OS=Shewanell... 41.2 0.025 sp|F4JFJ3|Y3206_ARATH ATP-dependent DNA helicase At3g02060, chlor... 41.6 0.025 sp|P0CQ91|MAK5_CRYNB ATP-dependent RNA helicase MAK5 OS=Cryptococ... 41.6 0.026 sp|A6ZWD3|DBP1_YEAS7 ATP-dependent RNA helicase DBP1 OS=Saccharom... 41.6 0.026 sp|Q5QYF8|RHLB_IDILO ATP-dependent RNA helicase RhlB OS=Idiomarin... 41.2 0.027 sp|A4QYM6|DRS1_PYRO7 ATP-dependent RNA helicase DRS1 OS=Pyricular... 41.6 0.027 sp|A2QC74|DBP2_ASPNC ATP-dependent RNA helicase dbp2 OS=Aspergill... 41.6 0.027 sp|P39145|COMFA_BACSU ComF operon protein 1 OS=Bacillus subtilis ... 41.2 0.027 sp|A1D373|PRP5_NEOFI Pre-mRNA-processing ATP-dependent RNA helica... 41.6 0.028 sp|Q9NR30|DDX21_HUMAN Nucleolar RNA helicase 2 OS=Homo sapiens OX... 41.6 0.028 sp|A2QIL2|PRP28_ASPNC Pre-mRNA-splicing ATP-dependent RNA helicas... 41.6 0.029 sp|P20703|UVSW_BPT4 ATP-dependent DNA helicase uvsW OS=Enterobact... 41.2 0.029 sp|B6EPA4|RHLB_ALISL ATP-dependent RNA helicase RhlB OS=Aliivibri... 41.2 0.029 sp|Q4WT99|PRP5_ASPFU Pre-mRNA-processing ATP-dependent RNA helica... 41.6 0.029 sp|A9IR19|UVRB_BORPD UvrABC system protein B OS=Bordetella petrii... 41.6 0.029 sp|P0CQ98|PRP5_CRYNJ Pre-mRNA-processing ATP-dependent RNA helica... 41.6 0.029 sp|P0CQ99|PRP5_CRYNB Pre-mRNA-processing ATP-dependent RNA helica... 41.6 0.029 sp|Q2U070|DBP2_ASPOR ATP-dependent RNA helicase dbp2 OS=Aspergill... 41.2 0.030 sp|A9L5D5|RHLB_SHEB9 ATP-dependent RNA helicase RhlB OS=Shewanell... 41.2 0.030 sp|A6WTD3|RHLB_SHEB8 ATP-dependent RNA helicase RhlB OS=Shewanell... 41.2 0.030 sp|Q5F485|DDX42_CHICK ATP-dependent RNA helicase DDX42 OS=Gallus ... 41.6 0.030 sp|Q62095|DDX3Y_MOUSE ATP-dependent RNA helicase DDX3Y OS=Mus mus... 41.2 0.030 sp|A2C5S6|UVRB_PROM3 UvrABC system protein B OS=Prochlorococcus m... 41.2 0.031 sp|P38719|DBP8_YEAST ATP-dependent RNA helicase DBP8 OS=Saccharom... 41.2 0.031 sp|A6ZT77|DBP8_YEAS7 ATP-dependent RNA helicase DBP8 OS=Saccharom... 41.2 0.031 sp|A3D9I5|RHLB_SHEB5 ATP-dependent RNA helicase RhlB OS=Shewanell... 41.2 0.031 sp|B8E670|RHLB_SHEB2 ATP-dependent RNA helicase RhlB OS=Shewanell... 41.2 0.031 sp|Q58083|H669_METJA Probable ATP-dependent RNA helicase MJ0669 O... 40.8 0.031 sp|A1CKJ0|DBP8_ASPCL ATP-dependent RNA helicase dbp8 OS=Aspergill... 41.2 0.031 sp|Q7TV80|UVRB_PROMM UvrABC system protein B OS=Prochlorococcus m... 41.2 0.032 sp|Q49Z29|CSHA_STAS1 DEAD-box ATP-dependent RNA helicase CshA OS=... 41.2 0.032 sp|A6RUH2|DRS1_BOTFB ATP-dependent RNA helicase drs1 OS=Botryotin... 41.2 0.032 sp|A6QSQ0|FAL1_AJECN ATP-dependent RNA helicase FAL1 OS=Ajellomyc... 41.2 0.033 sp|Q75F95|DRS1_EREGS ATP-dependent RNA helicase DRS1 OS=Eremothec... 41.2 0.033 sp|P33919|RADD_ECOLI Putative DNA repair helicase RadD OS=Escheri... 41.2 0.033 sp|A7F4L5|DRS1_SCLS1 ATP-dependent RNA helicase drs1 OS=Sclerotin... 41.2 0.033 sp|A5E1W4|DBP3_LODEL ATP-dependent RNA helicase DBP3 OS=Lodderomy... 41.2 0.034 sp|A1RFB3|RHLB_SHESW ATP-dependent RNA helicase RhlB OS=Shewanell... 40.8 0.034 sp|A4YB09|RHLB_SHEPC ATP-dependent RNA helicase RhlB OS=Shewanell... 40.8 0.034 sp|Q12S35|RHLB_SHEDO ATP-dependent RNA helicase RhlB OS=Shewanell... 40.8 0.034 sp|Q6LLL5|RHLB_PHOPR ATP-dependent RNA helicase RhlB OS=Photobact... 40.8 0.034 sp|Q9Y6V7|DDX49_HUMAN Probable ATP-dependent RNA helicase DDX49 O... 40.8 0.035 sp|Q54QS3|DDX3_DICDI Probable ATP-dependent RNA helicase ddx3 OS=... 41.2 0.035 sp|Q6CDN5|DBP6_YARLI ATP-dependent RNA helicase DBP6 OS=Yarrowia ... 41.2 0.035 sp|Q9HGM5|DBP8_SCHPO ATP-dependent RNA helicase dbp8 OS=Schizosac... 40.8 0.035 sp|Q5ACK7|DRS1_CANAL ATP-dependent RNA helicase DRS1 OS=Candida a... 41.2 0.036 sp|Q55170|UVRB_SYNY3 UvrABC system protein B OS=Synechocystis sp.... 41.2 0.036 sp|Q54KG1|DDX41_DICDI Probable ATP-dependent RNA helicase ddx41 O... 41.2 0.036 sp|Q9AKD5|MFD_RICTY Transcription-repair-coupling factor OS=Ricke... 41.2 0.036 sp|Q1DTB3|FAL1_COCIM ATP-dependent RNA helicase FAL1 OS=Coccidioi... 40.8 0.037 sp|Q5BCU6|PRP28_EMENI Pre-mRNA-splicing ATP-dependent RNA helicas... 41.2 0.038 sp|Q9SA27|RH36_ARATH DEAD-box ATP-dependent RNA helicase 36 OS=Ar... 40.8 0.038 sp|A5E6W6|RRP3_LODEL ATP-dependent rRNA helicase RRP3 OS=Lodderom... 40.8 0.038 sp|Q59MW2|DBP6_CANAL ATP-dependent RNA helicase DBP6 OS=Candida a... 40.8 0.039 sp|A5E726|DBP6_LODEL ATP-dependent RNA helicase DBP6 OS=Lodderomy... 40.8 0.039 sp|Q8W4R3|RH30_ARATH DEAD-box ATP-dependent RNA helicase 30 OS=Ar... 40.8 0.040 sp|A0PYA5|UVRB_CLONN UvrABC system protein B OS=Clostridium novyi... 40.8 0.040 sp|A5DAC8|DBP3_PICGU ATP-dependent RNA helicase DBP3 OS=Meyerozym... 40.8 0.041 sp|Q5GRL3|UVRB_WOLTR UvrABC system protein B OS=Wolbachia sp. sub... 40.8 0.042 sp|Q2GWJ5|FAL1_CHAGB ATP-dependent RNA helicase FAL1 OS=Chaetomiu... 40.4 0.043 sp|A6QUM7|DBP10_AJECN ATP-dependent RNA helicase DBP10 OS=Ajellom... 40.8 0.043 sp|Q7MYL2|RHLB_PHOLL ATP-dependent RNA helicase RhlB OS=Photorhab... 40.4 0.043 sp|A6ZUA1|DBP3_YEAS7 ATP-dependent RNA helicase DBP3 OS=Saccharom... 40.8 0.044 sp|Q0HQL1|RHLB_SHESR ATP-dependent RNA helicase RhlB OS=Shewanell... 40.4 0.045 sp|Q0HN76|RHLB_SHESM ATP-dependent RNA helicase RhlB OS=Shewanell... 40.4 0.045 sp|B5YJW4|UVRB_THEYD UvrABC system protein B OS=Thermodesulfovibr... 40.8 0.045 sp|B6J8A0|UVRB_COXB1 UvrABC system protein B OS=Coxiella burnetii... 40.8 0.045 sp|P0CQ86|DBP5_CRYNJ ATP-dependent RNA helicase DBP5 OS=Cryptococ... 40.8 0.045 sp|Q7W8V6|UVRB_BORPA UvrABC system protein B OS=Bordetella parape... 40.8 0.046 sp|Q1E2B2|DRS1_COCIM ATP-dependent RNA helicase DRS1 OS=Coccidioi... 40.8 0.046 sp|Q4I662|DBP8_GIBZE ATP-dependent RNA helicase DBP8 OS=Gibberell... 40.8 0.046 sp|A5DKW3|DRS1_PICGU ATP-dependent RNA helicase DRS1 OS=Meyerozym... 40.8 0.046 sp|Q5L3G9|CSHA_GEOKA DEAD-box ATP-dependent RNA helicase CshA OS=... 40.4 0.046 sp|Q63NE3|UVRB_BURPS UvrABC system protein B OS=Burkholderia pseu... 40.8 0.046 sp|Q62CK6|UVRB_BURMA UvrABC system protein B OS=Burkholderia mall... 40.8 0.046 sp|P20447|DBP3_YEAST ATP-dependent RNA helicase DBP3 OS=Saccharom... 40.8 0.047 sp|Q921N6|DDX27_MOUSE Probable ATP-dependent RNA helicase DDX27 O... 40.8 0.048 sp|P0CQ87|DBP5_CRYNB ATP-dependent RNA helicase DBP5 OS=Cryptococ... 40.4 0.049 sp|A1D6X9|DBP8_NEOFI ATP-dependent RNA helicase dbp8 OS=Neosartor... 40.4 0.049 sp|B1KQF6|RHLB_SHEWM ATP-dependent RNA helicase RhlB OS=Shewanell... 40.4 0.049 sp|A4QSS5|DBP2_PYRO7 ATP-dependent RNA helicase DBP2 OS=Pyricular... 40.4 0.049 sp|Q5APT8|DBP3_CANAL ATP-dependent RNA helicase DBP3 OS=Candida a... 40.4 0.050 sp|Q9P735|FAL1_NEUCR ATP-dependent RNA helicase fal-1 OS=Neurospo... 40.4 0.050 sp|O67708|UVRB_AQUAE UvrABC system protein B OS=Aquifex aeolicus ... 40.8 0.050 sp|Q5H9U9|DDX6L_HUMAN Probable ATP-dependent RNA helicase DDX60-l... 40.8 0.051 sp|A0KS84|RHLB_SHESA ATP-dependent RNA helicase RhlB OS=Shewanell... 40.4 0.051 sp|P30958|MFD_ECOLI Transcription-repair-coupling factor OS=Esche... 40.8 0.052 sp|Q8EJQ5|RHLB_SHEON ATP-dependent RNA helicase RhlB OS=Shewanell... 40.4 0.052 sp|A3LNL1|PRP28_PICST Pre-mRNA-splicing ATP-dependent RNA helicas... 40.4 0.053 sp|Q46IE1|UVRB_PROMT UvrABC system protein B OS=Prochlorococcus m... 40.4 0.053 sp|A2C5B3|UVRB_PROM1 UvrABC system protein B OS=Prochlorococcus m... 40.4 0.053 sp|A4QU31|FAL1_PYRO7 ATP-dependent RNA helicase FAL1 OS=Pyricular... 40.4 0.053 sp|Q12TR7|UVRB_METBU UvrABC system protein B OS=Methanococcoides ... 40.4 0.053 sp|A1SZG4|RHLB_PSYIN ATP-dependent RNA helicase RhlB OS=Psychromo... 40.4 0.054 sp|Q3ITS0|UVRB_NATPD UvrABC system protein B OS=Natronomonas phar... 40.4 0.054 sp|P43809|RECG_HAEIN ATP-dependent DNA helicase RecG OS=Haemophil... 40.4 0.054 sp|B7KC96|UVRB_GLOC7 UvrABC system protein B OS=Gloeothece citrif... 40.4 0.055 sp|Q761Z9|RH18_ORYSJ DEAD-box ATP-dependent RNA helicase 18 OS=Or... 40.4 0.055 sp|Q473K3|UVRB_CUPPJ UvrABC system protein B OS=Cupriavidus pinat... 40.4 0.055 sp|Q0D1K3|PRP5_ASPTN Pre-mRNA-processing ATP-dependent RNA helica... 40.8 0.056 sp|P32892|DRS1_YEAST ATP-dependent RNA helicase DRS1 OS=Saccharom... 40.4 0.058 sp|A7A0P8|DRS1_YEAS7 ATP-dependent RNA helicase DRS1 OS=Saccharom... 40.4 0.058 sp|Q75NR7|RECQ4_MOUSE ATP-dependent DNA helicase Q4 OS=Mus muscul... 40.4 0.058 sp|Q0CLX0|PRP28_ASPTN Pre-mRNA-splicing ATP-dependent RNA helicas... 40.4 0.058 sp|A5DLE0|DBP8_PICGU ATP-dependent RNA helicase DBP8 OS=Meyerozym... 40.0 0.058 sp|Q6FS54|DBP3_CANGA ATP-dependent RNA helicase DBP3 OS=Candida g... 40.4 0.059 sp|Q9PA24|RHLB_XYLFA ATP-dependent RNA helicase RhlB OS=Xylella f... 40.4 0.059 sp|A4XKY5|UVRB_CALS8 UvrABC system protein B OS=Caldicellulosirup... 40.4 0.061 sp|Q5HK76|HSDR_STAEQ Type I restriction enzyme SepRPIP endonuclea... 40.4 0.061 sp|Q8Y0N2|UVRB_RALN1 UvrABC system protein B OS=Ralstonia nicotia... 40.4 0.062 sp|A8G0U0|RHLB_SHESH ATP-dependent RNA helicase RhlB OS=Shewanell... 40.0 0.062 sp|P24782|DBP2_SCHPO ATP-dependent RNA helicase dbp2 OS=Schizosac... 40.4 0.062 sp|Q86XP3|DDX42_HUMAN ATP-dependent RNA helicase DDX42 OS=Homo sa... 40.4 0.063 sp|Q5R7D1|DDX42_PONAB ATP-dependent RNA helicase DDX42 OS=Pongo a... 40.4 0.064 sp|A9KCU2|UVRB_COXBN UvrABC system protein B OS=Coxiella burnetii... 40.4 0.064 sp|Q83E18|UVRB_COXBU UvrABC system protein B OS=Coxiella burnetii... 40.4 0.064 sp|A9NC09|UVRB_COXBR UvrABC system protein B OS=Coxiella burnetii... 40.4 0.064 sp|B6J1E8|UVRB_COXB2 UvrABC system protein B OS=Coxiella burnetii... 40.4 0.064 sp|Q4JG17|VASAL_PENVA Probable ATP-dependent RNA helicase vasa-li... 40.4 0.064 sp|Q8SQK9|DHH1_ENCCU ATP-dependent RNA helicase DHH1 OS=Encephali... 40.0 0.065 sp|Q9JIK5|DDX21_MOUSE Nucleolar RNA helicase 2 OS=Mus musculus OX... 40.4 0.066 sp|Q11Z64|UVRB_CYTH3 UvrABC system protein B OS=Cytophaga hutchin... 40.4 0.066 sp|Q5B0J9|DBP2_EMENI ATP-dependent RNA helicase dbp2 OS=Emericell... 40.0 0.066 sp|A7EM88|FAL1_SCLS1 ATP-dependent RNA helicase fal1 OS=Sclerotin... 40.0 0.067 sp|A6S4N4|FAL1_BOTFB ATP-dependent RNA helicase fal1 OS=Botryotin... 40.0 0.067 sp|Q810A7|DDX42_MOUSE ATP-dependent RNA helicase DDX42 OS=Mus mus... 40.4 0.067 sp|Q879Y6|RHLB_XYLFT ATP-dependent RNA helicase RhlB OS=Xylella f... 40.0 0.068 sp|Q3JC03|UVRB_NITOC UvrABC system protein B OS=Nitrosococcus oce... 40.0 0.068 sp|Q3B8Q1|DDX21_RAT Nucleolar RNA helicase 2 OS=Rattus norvegicus... 40.4 0.069 sp|A5DU73|PRP28_LODEL Pre-mRNA-splicing ATP-dependent RNA helicas... 40.0 0.071 sp|O29889|XPB_ARCFU DNA 3'-5' translocase XPB OS=Archaeoglobus fu... 40.0 0.071 sp|Q88LF9|UVRB_PSEPK UvrABC system protein B OS=Pseudomonas putid... 40.0 0.071 sp|Q5BDW4|PRP5_EMENI Pre-mRNA-processing ATP-dependent RNA helica... 40.4 0.073 sp|Q2H0R2|DBP10_CHAGB ATP-dependent RNA helicase DBP10 OS=Chaetom... 40.0 0.073 sp|B4F1V3|RHLB_PROMH ATP-dependent RNA helicase RhlB OS=Proteus m... 40.0 0.074 sp|Q8CSV3|RECG_STAES ATP-dependent DNA helicase RecG OS=Staphyloc... 40.0 0.075 sp|Q3KF38|UVRB_PSEPF UvrABC system protein B OS=Pseudomonas fluor... 40.0 0.076 sp|Q4KF19|UVRB_PSEF5 UvrABC system protein B OS=Pseudomonas fluor... 40.0 0.077 sp|P25888|RHLE_ECOLI ATP-dependent RNA helicase RhlE OS=Escherich... 39.7 0.080 sp|Q6CEB8|DRS1_YARLI ATP-dependent RNA helicase DRS1 OS=Yarrowia ... 40.0 0.082 sp|Q8ENJ5|UVRB_OCEIH UvrABC system protein B OS=Oceanobacillus ih... 40.0 0.083 sp|Q5N7W4|RH30_ORYSJ DEAD-box ATP-dependent RNA helicase 30 OS=Or... 40.0 0.085 sp|Q9UHL0|DDX25_HUMAN ATP-dependent RNA helicase DDX25 OS=Homo sa... 39.7 0.087 sp|B3EFX1|UVRB_CHLL2 UvrABC system protein B OS=Chlorobium limico... 40.0 0.087 sp|Q64060|DDX4_RAT Probable ATP-dependent RNA helicase DDX4 OS=Ra... 40.0 0.088 sp|B8CHZ1|RHLB_SHEPW ATP-dependent RNA helicase RhlB OS=Shewanell... 39.7 0.091 sp|Q92841|DDX17_HUMAN Probable ATP-dependent RNA helicase DDX17 O... 39.7 0.091 sp|A3LSJ2|DBP6_PICST ATP-dependent RNA helicase DBP6 OS=Scheffers... 39.7 0.092 sp|Q6CJV1|DRS1_KLULA ATP-dependent RNA helicase DRS1 OS=Kluyverom... 39.7 0.092 sp|P72174|UVRB_PSEAE UvrABC system protein B OS=Pseudomonas aerug... 39.7 0.093 sp|Q501J6|DDX17_MOUSE Probable ATP-dependent RNA helicase DDX17 O... 39.7 0.093 sp|Q5N3H1|UVRB_SYNP6 UvrABC system protein B OS=Synechococcus sp.... 39.7 0.093 sp|Q31QS4|UVRB_SYNE7 UvrABC system protein B OS=Synechococcus elo... 39.7 0.093 sp|Q41382|RH7_SPIOL DEAD-box ATP-dependent RNA helicase 7 OS=Spin... 39.7 0.094 sp|B6EGH8|UVRB_ALISL UvrABC system protein B OS=Aliivibrio salmon... 39.7 0.095 sp|Q7M806|UVRB_WOLSU UvrABC system protein B OS=Wolinella succino... 39.7 0.095 sp|Q031G7|UVRB_LACLS UvrABC system protein B OS=Lactococcus lacti... 39.7 0.095 sp|Q10MH8|RH24_ORYSJ DEAD-box ATP-dependent RNA helicase 24 OS=Or... 39.7 0.096 sp|Q75C39|DBP5_EREGS ATP-dependent RNA helicase DBP5 OS=Eremothec... 39.7 0.096 sp|Q49VV6|UVRB_STAS1 UvrABC system protein B OS=Staphylococcus sa... 39.7 0.098 sp|B9MS82|UVRB_CALBD UvrABC system protein B OS=Caldicellulosirup... 39.7 0.10 sp|A5E058|PRP5_LODEL Pre-mRNA-processing ATP-dependent RNA helica... 39.7 0.11 sp|A4W1F7|UVRB_STRS2 UvrABC system protein B OS=Streptococcus sui... 39.7 0.11 sp|Q6MEV1|UVRB_PARUW UvrABC system protein B OS=Protochlamydia am... 39.7 0.11 sp|Q7ZVA6|IF4A3_DANRE Eukaryotic initiation factor 4A-III OS=Dani... 39.3 0.11 sp|Q9Y7T7|PRP28_SCHPO Pre-mRNA-splicing ATP-dependent RNA helicas... 39.7 0.11 sp|Q5WDG7|UVRB_SHOC1 UvrABC system protein B OS=Shouchella clausi... 39.7 0.11 sp|A4REU9|MAK5_PYRO7 ATP-dependent RNA helicase MAK5 OS=Pyricular... 39.7 0.11 sp|Q0UAT0|FAL1_PHANO ATP-dependent RNA helicase FAL1 OS=Phaeospha... 39.3 0.11 sp|Q5ADL0|PRP5_CANAL Pre-mRNA-processing ATP-dependent RNA helica... 39.7 0.12 sp|P32639|BRR2_YEAST Pre-mRNA-splicing helicase BRR2 OS=Saccharom... 39.7 0.12 sp|Q8PRZ9|UVRB_METMA UvrABC system protein B OS=Methanosarcina ma... 39.3 0.12 sp|B8HQA9|UVRB_CYAP4 UvrABC system protein B OS=Cyanothece sp. (s... 39.3 0.12 sp|C1CKX8|UVRB_STRZP UvrABC system protein B OS=Streptococcus pne... 39.3 0.12 sp|Q8DPK7|UVRB_STRR6 UvrABC system protein B OS=Streptococcus pne... 39.3 0.12 sp|Q04K81|UVRB_STRP2 UvrABC system protein B OS=Streptococcus pne... 39.3 0.12 sp|Q7VXH4|UVRB_BORPE UvrABC system protein B OS=Bordetella pertus... 39.3 0.12 sp|C1C7L7|UVRB_STRP7 UvrABC system protein B OS=Streptococcus pne... 39.3 0.12 sp|B5E4X3|UVRB_STRP4 UvrABC system protein B OS=Streptococcus pne... 39.3 0.12 sp|Q2L244|UVRB_BORA1 UvrABC system protein B OS=Bordetella avium ... 39.3 0.12 sp|C1CEJ5|UVRB_STRZJ UvrABC system protein B OS=Streptococcus pne... 39.3 0.12 sp|B2IPP4|UVRB_STRPS UvrABC system protein B OS=Streptococcus pne... 39.3 0.12 sp|Q54986|UVRB_STRPN UvrABC system protein B OS=Streptococcus pne... 39.3 0.12 sp|B8ZJQ9|UVRB_STRPJ UvrABC system protein B OS=Streptococcus pne... 39.3 0.12 sp|Q2UH00|PRP28_ASPOR Pre-mRNA-splicing ATP-dependent RNA helicas... 39.3 0.13 sp|Q7WK66|UVRB_BORBR UvrABC system protein B OS=Bordetella bronch... 39.3 0.13 sp|B1IC35|UVRB_STRPI UvrABC system protein B OS=Streptococcus pne... 39.3 0.13 sp|A1STV6|UVRB_PSYIN UvrABC system protein B OS=Psychromonas ingr... 39.3 0.13 sp|Q6BLU9|PRP28_DEBHA Pre-mRNA-splicing ATP-dependent RNA helicas... 39.3 0.13 sp|A1CHL3|PRP28_ASPCL Pre-mRNA-splicing ATP-dependent RNA helicas... 39.3 0.13 sp|Q6LT47|UVRB_PHOPR UvrABC system protein B OS=Photobacterium pr... 39.3 0.13 sp|Q4WXW1|DBP8_ASPFU ATP-dependent RNA helicase dbp8 OS=Aspergill... 39.3 0.13 sp|B8H7K6|UVRB_PSECP UvrABC system protein B OS=Pseudarthrobacter... 39.3 0.13 sp|Q89AK2|MFD_BUCBP Transcription-repair-coupling factor OS=Buchn... 39.3 0.13 sp|Q6CT46|DBP3_KLULA ATP-dependent RNA helicase DBP3 OS=Kluyverom... 39.3 0.13 sp|O05955|MFD_RICPR Transcription-repair-coupling factor OS=Ricke... 39.3 0.13 sp|A5AA68|DBP8_ASPNC ATP-dependent RNA helicase dbp8 OS=Aspergill... 39.3 0.14 sp|Q6C347|FAL1_YARLI ATP-dependent RNA helicase FAL1 OS=Yarrowia ... 38.9 0.14 sp|P45125|UVRB_HAEIN UvrABC system protein B OS=Haemophilus influ... 39.3 0.14 sp|Q605S7|UVRB_METCA UvrABC system protein B OS=Methylococcus cap... 39.3 0.14 sp|Q8W4E1|RH47_ARATH DEAD-box ATP-dependent RNA helicase 47, mito... 39.3 0.14 sp|Q0CNX1|DBP8_ASPTN ATP-dependent RNA helicase dbp8 OS=Aspergill... 39.3 0.14 sp|P57844|UVRB_PASMU UvrABC system protein B OS=Pasteurella multo... 39.3 0.14 sp|Q4QJX4|UVRB_HAEI8 UvrABC system protein B OS=Haemophilus influ... 39.3 0.14 sp|A1D1R8|DRS1_NEOFI ATP-dependent RNA helicase drs1 OS=Neosartor... 39.3 0.14 sp|A6RGE3|DBP2_AJECN ATP-dependent RNA helicase DBP2 OS=Ajellomyc... 39.3 0.14 sp|B7UM74|RECG_ECO27 ATP-dependent DNA helicase RecG OS=Escherich... 39.3 0.14 sp|A3LRW2|DBP3_PICST ATP-dependent RNA helicase DBP3 OS=Scheffers... 38.9 0.14 sp|Q0CZN5|DRS1_ASPTN ATP-dependent RNA helicase drs1 OS=Aspergill... 39.3 0.14 sp|A6RW79|PRP5_BOTFB Pre-mRNA-processing ATP-dependent RNA helica... 39.3 0.14 sp|A6TGG9|RHLB_KLEP7 ATP-dependent RNA helicase RhlB OS=Klebsiell... 38.9 0.14 sp|Q755W0|FAL1_EREGS ATP-dependent RNA helicase FAL1 OS=Eremothec... 38.9 0.14 sp|Q4WH83|DBP3_ASPFU ATP-dependent RNA helicase dbp3 OS=Aspergill... 38.9 0.14 sp|Q93ZG7|RH38_ARATH DEAD-box ATP-dependent RNA helicase 38 OS=Ar... 38.9 0.14 sp|Q65ST2|UVRB_MANSM UvrABC system protein B OS=Mannheimia succin... 39.3 0.15 sp|Q5HVA1|UVRB_CAMJR UvrABC system protein B OS=Campylobacter jej... 39.3 0.15 sp|B0JR86|UVRB_MICAN UvrABC system protein B OS=Microcystis aerug... 39.3 0.15 sp|Q8CRP6|CSHA_STAES DEAD-box ATP-dependent RNA helicase CshA OS=... 38.9 0.15 sp|Q91372|DDX4_XENLA Probable ATP-dependent RNA helicase DDX4 OS=... 39.3 0.15 sp|Q5HME0|CSHA_STAEQ DEAD-box ATP-dependent RNA helicase CshA OS=... 38.9 0.15 sp|Q480C7|UVRB_COLP3 UvrABC system protein B OS=Colwellia psychre... 39.3 0.15 sp|P24230|RECG_ECOLI ATP-dependent DNA helicase RecG OS=Escherich... 39.3 0.15 sp|Q9SQV1|RH40_ARATH DEAD-box ATP-dependent RNA helicase 40 OS=Ar... 39.3 0.15 sp|Q7NTA7|UVRB_CHRVO UvrABC system protein B OS=Chromobacterium v... 39.3 0.15 sp|Q9PPM7|UVRB_CAMJE UvrABC system protein B OS=Campylobacter jej... 38.9 0.15 sp|Q72XV1|UVRB_BACC1 UvrABC system protein B OS=Bacillus cereus (... 38.9 0.15 sp|P41380|IF4A3_NICPL Eukaryotic initiation factor 4A-3 OS=Nicoti... 38.9 0.15 sp|Q8XD86|RECG_ECO57 ATP-dependent DNA helicase RecG OS=Escherich... 38.9 0.15 sp|Q3SIK7|UVRB_THIDA UvrABC system protein B OS=Thiobacillus deni... 38.9 0.15 sp|Q6FW42|DRS1_CANGA ATP-dependent RNA helicase DRS1 OS=Candida g... 38.9 0.16 sp|Q8CWX7|UVRB_STRMU UvrABC system protein B OS=Streptococcus mut... 38.9 0.16 sp|Q631I6|UVRB_BACCZ UvrABC system protein B OS=Bacillus cereus (... 38.9 0.16 sp|A2QQA8|PRP5_ASPNC Pre-mRNA-processing ATP-dependent RNA helica... 39.3 0.16 sp|B5XYY9|RHLB_KLEP3 ATP-dependent RNA helicase RhlB OS=Klebsiell... 38.9 0.16 sp|B0CE09|UVRB_ACAM1 UvrABC system protein B OS=Acaryochloris mar... 38.9 0.16 sp|A7ENE0|PRP5_SCLS1 Pre-mRNA-processing ATP-dependent RNA helica... 39.3 0.16 sp|A6SFV4|DBP8_BOTFB ATP-dependent RNA helicase dbp8 OS=Botryotin... 38.9 0.16 sp|Q9CWT6|DDX28_MOUSE Probable ATP-dependent RNA helicase DDX28 O... 38.9 0.16 sp|Q5P0E7|UVRB_AROAE UvrABC system protein B OS=Aromatoleum aroma... 38.9 0.16 sp|Q8NJM2|DBP10_ASPFU ATP-dependent RNA helicase dbp10 OS=Aspergi... 39.3 0.16 sp|Q6HBC2|UVRB_BACHK UvrABC system protein B OS=Bacillus thuringi... 38.9 0.17 sp|Q815I3|UVRB_BACCR UvrABC system protein B OS=Bacillus cereus (... 38.9 0.17 sp|Q81X47|UVRB_BACAN UvrABC system protein B OS=Bacillus anthraci... 38.9 0.17 sp|Q4I830|DRS1_GIBZE ATP-dependent RNA helicase DRS1 OS=Gibberell... 38.9 0.17 sp|Q6BML1|PRP5_DEBHA Pre-mRNA-processing ATP-dependent RNA helica... 38.9 0.17 sp|Q97LQ2|UVRB_CLOAB UvrABC system protein B OS=Clostridium aceto... 38.9 0.17 sp|Q48KA6|UVRB_PSE14 UvrABC system protein B OS=Pseudomonas savas... 38.9 0.17 sp|Q5XBN4|UVRB_STRP6 UvrABC system protein B OS=Streptococcus pyo... 38.9 0.17 sp|Q55CP6|DDX1_DICDI Probable ATP-dependent RNA helicase ddx1 OS=... 38.9 0.17 sp|Q884C9|UVRB_PSESM UvrABC system protein B OS=Pseudomonas syrin... 38.9 0.17 sp|Q4WRV2|DRS1_ASPFU ATP-dependent RNA helicase drs1 OS=Aspergill... 38.9 0.17 sp|A5DE68|FAL1_PICGU ATP-dependent RNA helicase FAL1 OS=Meyerozym... 38.5 0.17 sp|Q4L7W0|CSHA_STAHJ DEAD-box ATP-dependent RNA helicase CshA OS=... 38.9 0.17 sp|Q2UKX3|DBP8_ASPOR ATP-dependent RNA helicase dbp8 OS=Aspergill... 38.5 0.17 sp|Q1JGE8|UVRB_STRPD UvrABC system protein B OS=Streptococcus pyo... 38.9 0.17 sp|Q4ZV05|UVRB_PSEU2 UvrABC system protein B OS=Pseudomonas syrin... 38.9 0.17 sp|Q47EI2|UVRB_DECAR UvrABC system protein B OS=Dechloromonas aro... 38.9 0.18 sp|Q6LZA2|UVRB_METMP UvrABC system protein B OS=Methanococcus mar... 38.9 0.18 sp|C0MDC6|UVRB_STRS7 UvrABC system protein B OS=Streptococcus equ... 38.9 0.18 sp|A0RPB3|UVRB_CAMFF UvrABC system protein B OS=Campylobacter fet... 38.9 0.18 sp|Q2GUI4|DBP3_CHAGB ATP-dependent RNA helicase DBP3 OS=Chaetomiu... 38.9 0.18 sp|B4U3P4|UVRB_STREM UvrABC system protein B OS=Streptococcus equ... 38.9 0.18 sp|Q9DGP9|DDX25_XENLA ATP-dependent RNA helicase DDX25 OS=Xenopus... 38.5 0.18 sp|Q87MX6|UVRB_VIBPA UvrABC system protein B OS=Vibrio parahaemol... 38.9 0.18 sp|Q8P0J7|UVRB_STRP8 UvrABC system protein B OS=Streptococcus pyo... 38.9 0.18 sp|Q5UYC8|UVRB_HALMA UvrABC system protein B OS=Haloarcula marism... 38.9 0.18 sp|F1NTD6|ASCC3_CHICK Activating signal cointegrator 1 complex su... 38.9 0.19 sp|Q0SW76|UVRB_CLOPS UvrABC system protein B OS=Clostridium perfr... 38.9 0.19 sp|Q48SZ1|UVRB_STRPM UvrABC system protein B OS=Streptococcus pyo... 38.9 0.19 sp|C0MBD7|UVRB_STRE4 UvrABC system protein B OS=Streptococcus equ... 38.9 0.19 sp|P0DH39|UVRB_STRPQ UvrABC system protein B OS=Streptococcus pyo... 38.9 0.19 sp|Q1JLB5|UVRB_STRPC UvrABC system protein B OS=Streptococcus pyo... 38.9 0.19 sp|Q1JBD1|UVRB_STRPB UvrABC system protein B OS=Streptococcus pyo... 38.9 0.19 sp|P0DH38|UVRB_STRP3 UvrABC system protein B OS=Streptococcus pyo... 38.9 0.19 sp|Q3K051|UVRB_STRA1 UvrABC system protein B OS=Streptococcus aga... 38.9 0.19 sp|A2RE43|UVRB_STRPG UvrABC system protein B OS=Streptococcus pyo... 38.9 0.19 sp|P67425|UVRB_STAAN UvrABC system protein B OS=Staphylococcus au... 38.9 0.19 sp|P67424|UVRB_STAAM UvrABC system protein B OS=Staphylococcus au... 38.9 0.19 sp|A7ESL7|DBP10_SCLS1 ATP-dependent RNA helicase dbp10 OS=Sclerot... 38.9 0.19 sp|Q8DYL6|UVRB_STRA5 UvrABC system protein B OS=Streptococcus aga... 38.9 0.19 sp|Q8E471|UVRB_STRA3 UvrABC system protein B OS=Streptococcus aga... 38.9 0.19 sp|Q0TUD0|UVRB_CLOP1 UvrABC system protein B OS=Clostridium perfr... 38.9 0.20 sp|B5XLX7|UVRB_STRPZ UvrABC system protein B OS=Streptococcus pyo... 38.9 0.20 sp|Q99ZA5|UVRB_STRP1 UvrABC system protein B OS=Streptococcus pyo... 38.9 0.20 sp|Q6GIN3|UVRB_STAAR UvrABC system protein B OS=Staphylococcus au... 38.9 0.20 sp|Q5HHR0|UVRB_STAAC UvrABC system protein B OS=Staphylococcus au... 38.9 0.20 sp|P45128|MFD_HAEIN Transcription-repair-coupling factor OS=Haemo... 38.9 0.20 sp|Q1DP69|DBP2_COCIM ATP-dependent RNA helicase DBP2 OS=Coccidioi... 38.5 0.20 sp|Q4P9P3|DRS1_USTMA ATP-dependent RNA helicase DRS1 OS=Ustilago ... 38.9 0.20 sp|Q46323|UVRB_CLOPE UvrABC system protein B OS=Clostridium perfr... 38.5 0.20 sp|A5DK47|DBP6_PICGU ATP-dependent RNA helicase DBP6 OS=Meyerozym... 38.5 0.20 sp|Q8R8M4|UVRB_CALS4 UvrABC system protein B OS=Caldanaerobacter ... 38.5 0.20 sp|Q3A8D0|UVRB_SYNC1 UvrABC system protein B OS=Syntrophotalea ca... 38.5 0.20 sp|Q8NXM0|UVRB_STAAW UvrABC system protein B OS=Staphylococcus au... 38.5 0.20 sp|Q6GB72|UVRB_STAAS UvrABC system protein B OS=Staphylococcus au... 38.5 0.20 sp|P0CQ76|DBP2_CRYNJ ATP-dependent RNA helicase DBP2-A OS=Cryptoc... 38.5 0.20 sp|P0CQ77|DBP2_CRYNB ATP-dependent RNA helicase DBP2-A OS=Cryptoc... 38.5 0.20 sp|F4INA9|RECG_ARATH ATP-dependent DNA helicase homolog RECG, chl... 38.9 0.21 sp|Q83S42|UVRB_SHIFL UvrABC system protein B OS=Shigella flexneri... 38.5 0.21 sp|Q0T6I1|UVRB_SHIF8 UvrABC system protein B OS=Shigella flexneri... 38.5 0.21 sp|Q5K5B6|RH57_ORYSJ DEAD-box ATP-dependent RNA helicase 57 OS=Or... 38.5 0.21 sp|A4WG30|RHLB_ENT38 ATP-dependent RNA helicase RhlB OS=Enterobac... 38.5 0.21 sp|Q7UZL3|UVRB_PROMP UvrABC system protein B OS=Prochlorococcus m... 38.5 0.21 sp|Q9UJV9|DDX41_HUMAN Probable ATP-dependent RNA helicase DDX41 O... 38.5 0.21 sp|A2RIP3|UVRB_LACLM UvrABC system protein B OS=Lactococcus lacti... 38.5 0.21 sp|Q61496|DDX4_MOUSE ATP-dependent RNA helicase DDX4 OS=Mus muscu... 38.5 0.22 sp|B9DSH1|UVRB_STRU0 UvrABC system protein B OS=Streptococcus ube... 38.5 0.22 sp|Q8CGS6|DPOLQ_MOUSE DNA polymerase theta OS=Mus musculus OX=100... 38.9 0.22 sp|P44922|RHLB_HAEIN ATP-dependent RNA helicase RhlB OS=Haemophil... 38.5 0.22 sp|Q53RK8|RH21_ORYSJ DEAD-box ATP-dependent RNA helicase 21 OS=Or... 38.5 0.22 sp|A6QXC1|DBP3_AJECN ATP-dependent RNA helicase DBP3 OS=Ajellomyc... 38.5 0.22 sp|Q8CPZ0|UVRB_STAES UvrABC system protein B OS=Staphylococcus ep... 38.5 0.22 sp|Q6BZ77|DBP3_DEBHA ATP-dependent RNA helicase DBP3 OS=Debaryomy... 38.5 0.22 sp|Q55D61|IF4A_DICDI Eukaryotic initiation factor 4A OS=Dictyoste... 38.1 0.22 sp|A3LX02|SPB4_PICST ATP-dependent rRNA helicase SPB4 OS=Scheffer... 38.5 0.22 sp|B0SLS0|UVRB_LEPBP UvrABC system protein B OS=Leptospira biflex... 38.5 0.22 sp|B0SDE2|UVRB_LEPBA UvrABC system protein B OS=Leptospira biflex... 38.5 0.22 sp|P96614|CSHA_BACSU DEAD-box ATP-dependent RNA helicase CshA OS=... 38.5 0.22 sp|Q82WA9|UVRB_NITEU UvrABC system protein B OS=Nitrosomonas euro... 38.5 0.22 sp|Q5HQX0|UVRB_STAEQ UvrABC system protein B OS=Staphylococcus ep... 38.5 0.23 sp|B5YY28|RHLB_ECO5E ATP-dependent RNA helicase RhlB OS=Escherich... 38.1 0.23 sp|Q1J665|UVRB_STRPF UvrABC system protein B OS=Streptococcus pyo... 38.5 0.23 sp|Q0E3X4|RH35A_ORYSJ DEAD-box ATP-dependent RNA helicase 35A OS=... 38.5 0.23 sp|A3CNJ9|UVRB_STRSV UvrABC system protein B OS=Streptococcus san... 38.5 0.23 sp|P0CQ93|DRS1_CRYNB ATP-dependent RNA helicase DRS1 OS=Cryptococ... 38.5 0.23 sp|P53327|ASCC3_YEAST RQC trigger complex helicase SLH1 OS=Saccha... 38.5 0.24 sp|Q5KVB5|UVRB_GEOKA UvrABC system protein B OS=Geobacillus kaust... 38.5 0.24 sp|A5UI36|RHLB_HAEIG ATP-dependent RNA helicase RhlB OS=Haemophil... 38.1 0.24 sp|Q91VN6|DDX41_MOUSE Probable ATP-dependent RNA helicase DDX41 O... 38.5 0.24 sp|P56981|UVRB_BACCA UvrABC system protein B OS=Bacillus caldoten... 38.5 0.24 sp|P37954|UVRB_BACSU UvrABC system protein B OS=Bacillus subtilis... 38.5 0.24 sp|Q6BL34|DBP10_DEBHA ATP-dependent RNA helicase DBP10 OS=Debaryo... 38.5 0.24 sp|A5UDI1|RHLB_HAEIE ATP-dependent RNA helicase RhlB OS=Haemophil... 38.1 0.24 sp|Q5JK84|RH15_ORYSJ DEAD-box ATP-dependent RNA helicase 15 OS=Or... 38.1 0.24 sp|B1LLV3|RHLB_ECOSM ATP-dependent RNA helicase RhlB OS=Escherich... 38.1 0.24 sp|B2A713|UVRB_NATTJ UvrABC system protein B OS=Natranaerobius th... 38.5 0.24 sp|P0CQ92|DRS1_CRYNJ ATP-dependent RNA helicase DRS1 OS=Cryptococ... 38.5 0.24 sp|Q0JM17|RH56_ORYSJ DEAD-box ATP-dependent RNA helicase 56 OS=Or... 38.1 0.24 sp|Q6FQU5|DHH1_CANGA ATP-dependent RNA helicase DHH1 OS=Candida g... 38.1 0.24 sp|Q4L4I5|UVRB_STAHJ UvrABC system protein B OS=Staphylococcus ha... 38.5 0.25 sp|Q9V0A9|HELS_PYRAB ATP-dependent DNA helicase Hel308 OS=Pyrococ... 38.5 0.25 sp|P10125|UVRB_MICLC UvrABC system protein B OS=Micrococcus luteu... 38.5 0.25 sp|Q329V8|RHLB_SHIDS ATP-dependent RNA helicase RhlB OS=Shigella ... 38.1 0.25 sp|Q92H58|MFD_RICCN Transcription-repair-coupling factor OS=Ricke... 38.5 0.25 sp|P0A2P0|RHLB_SALTY ATP-dependent RNA helicase RhlB OS=Salmonell... 38.1 0.25 sp|P0A2P1|RHLB_SALTI ATP-dependent RNA helicase RhlB OS=Salmonell... 38.1 0.25 sp|B4TNT3|RHLB_SALSV ATP-dependent RNA helicase RhlB OS=Salmonell... 38.1 0.25 sp|C0Q2V9|RHLB_SALPC ATP-dependent RNA helicase RhlB OS=Salmonell... 38.1 0.25 sp|A9MXF3|RHLB_SALPB ATP-dependent RNA helicase RhlB OS=Salmonell... 38.1 0.25 sp|B4SZ26|RHLB_SALNS ATP-dependent RNA helicase RhlB OS=Salmonell... 38.1 0.25 sp|B4TB13|RHLB_SALHS ATP-dependent RNA helicase RhlB OS=Salmonell... 38.1 0.25 sp|B5RFS3|RHLB_SALG2 ATP-dependent RNA helicase RhlB OS=Salmonell... 38.1 0.25 sp|B5QVH2|RHLB_SALEP ATP-dependent RNA helicase RhlB OS=Salmonell... 38.1 0.25 sp|B5FN74|RHLB_SALDC ATP-dependent RNA helicase RhlB OS=Salmonell... 38.1 0.25 sp|Q57HT6|RHLB_SALCH ATP-dependent RNA helicase RhlB OS=Salmonell... 38.1 0.25 sp|B5EZ40|RHLB_SALA4 ATP-dependent RNA helicase RhlB OS=Salmonell... 38.1 0.25 sp|A8AX17|UVRB_STRGC UvrABC system protein B OS=Streptococcus gor... 38.5 0.25 sp|Q02748|IF4A_DROME Eukaryotic initiation factor 4A OS=Drosophil... 38.1 0.25 sp|B5BIS9|RHLB_SALPK ATP-dependent RNA helicase RhlB OS=Salmonell... 38.1 0.26 sp|Q4WPE9|PRP28_ASPFU Pre-mRNA-splicing ATP-dependent RNA helicas... 38.5 0.26 sp|Q86IZ9|DDX52_DICDI Probable ATP-dependent RNA helicase ddx52 O... 38.5 0.26 sp|Q4IP34|PRP5_GIBZE Pre-mRNA-processing ATP-dependent RNA helica... 38.5 0.26 sp|A5GHU1|UVRB_SYNPW UvrABC system protein B OS=Synechococcus sp.... 38.5 0.26 sp|A9MJ29|RHLB_SALAR ATP-dependent RNA helicase RhlB OS=Salmonell... 38.1 0.26 sp|Q9CMB4|RECG_PASMU ATP-dependent DNA helicase RecG OS=Pasteurel... 38.5 0.26 sp|B1L280|UVRB_CLOBM UvrABC system protein B OS=Clostridium botul... 38.5 0.26 sp|Q9CI06|UVRB_LACLA UvrABC system protein B OS=Lactococcus lacti... 38.5 0.26 sp|C1CR65|UVRB_STRZT UvrABC system protein B OS=Streptococcus pne... 38.1 0.26 sp|Q7UA24|UVRB_PARMW UvrABC system protein B OS=Parasynechococcus... 38.1 0.27 sp|Q31UK5|RHLB_SHIBS ATP-dependent RNA helicase RhlB OS=Shigella ... 38.1 0.27 sp|B2TU12|RHLB_SHIB3 ATP-dependent RNA helicase RhlB OS=Shigella ... 38.1 0.27 sp|Q1E0Z3|DBP8_COCIM ATP-dependent RNA helicase DBP8 OS=Coccidioi... 38.1 0.27 sp|Q03SM9|UVRB_LEVBA UvrABC system protein B OS=Levilactobacillus... 38.1 0.27 sp|Q3YVI4|RHLB_SHISS ATP-dependent RNA helicase RhlB OS=Shigella ... 38.1 0.27 sp|P0A8K0|RHLB_SHIFL ATP-dependent RNA helicase RhlB OS=Shigella ... 38.1 0.27 sp|Q1R4F9|RHLB_ECOUT ATP-dependent RNA helicase RhlB OS=Escherich... 38.1 0.27 sp|B6I4B6|RHLB_ECOSE ATP-dependent RNA helicase RhlB OS=Escherich... 38.1 0.27 sp|P0A8J8|RHLB_ECOLI ATP-dependent RNA helicase RhlB OS=Escherich... 38.1 0.27 sp|B1IWC0|RHLB_ECOLC ATP-dependent RNA helicase RhlB OS=Escherich... 38.1 0.27 sp|P0A8J9|RHLB_ECOL6 ATP-dependent RNA helicase RhlB OS=Escherich... 38.1 0.27 sp|Q0TAU3|RHLB_ECOL5 ATP-dependent RNA helicase RhlB OS=Escherich... 38.1 0.27 sp|A1AHV0|RHLB_ECOK1 ATP-dependent RNA helicase RhlB OS=Escherich... 38.1 0.27 sp|A8A6N4|RHLB_ECOHS ATP-dependent RNA helicase RhlB OS=Escherich... 38.1 0.27 sp|B1X9Z4|RHLB_ECODH ATP-dependent RNA helicase RhlB OS=Escherich... 38.1 0.27 sp|C4ZZ48|RHLB_ECOBW ATP-dependent RNA helicase RhlB OS=Escherich... 38.1 0.27 sp|B7M5C7|RHLB_ECO8A ATP-dependent RNA helicase RhlB OS=Escherich... 38.1 0.27 sp|B7MR01|RHLB_ECO81 ATP-dependent RNA helicase RhlB OS=Escherich... 38.1 0.27 sp|B7L8B6|RHLB_ECO55 ATP-dependent RNA helicase RhlB OS=Escherich... 38.1 0.27 sp|B7MGJ1|RHLB_ECO45 ATP-dependent RNA helicase RhlB OS=Escherich... 38.1 0.27 sp|B7UMN5|RHLB_ECO27 ATP-dependent RNA helicase RhlB OS=Escherich... 38.1 0.27 sp|A7ZTY2|RHLB_ECO24 ATP-dependent RNA helicase RhlB OS=Escherich... 38.1 0.27 sp|Q5NFN4|UVRB_FRATT UvrABC system protein B OS=Francisella tular... 38.1 0.27 sp|Q9Y7C4|ROK1_CANAL ATP-dependent RNA helicase CHR1 OS=Candida a... 38.1 0.28 sp|Q10202|DBP3_SCHPO ATP-dependent RNA helicase dbp3 OS=Schizosac... 38.1 0.28 sp|B7LU75|RHLB_ESCF3 ATP-dependent RNA helicase RhlB OS=Escherich... 38.1 0.28 sp|Q054D2|UVRB_LEPBL UvrABC system protein B OS=Leptospira borgpe... 38.1 0.28 sp|Q04QJ9|UVRB_LEPBJ UvrABC system protein B OS=Leptospira borgpe... 38.1 0.28 sp|Q8H0U8|RH42_ARATH DEAD-box ATP-dependent RNA helicase 42 OS=Ar... 38.5 0.28 sp|Q9NXZ2|DDX43_HUMAN Probable ATP-dependent RNA helicase DDX43 O... 38.1 0.28 sp|B7NF85|RHLB_ECOLU ATP-dependent RNA helicase RhlB OS=Escherich... 38.1 0.28 sp|B7NTG2|RHLB_ECO7I ATP-dependent RNA helicase RhlB OS=Escherich... 38.1 0.28 sp|Q9VHS8|IF4A3_DROME Eukaryotic initiation factor 4A-III OS=Dros... 38.1 0.28 sp|Q88YI8|UVRB_LACPL UvrABC system protein B OS=Lactiplantibacill... 38.1 0.28 sp|Q0SYX0|RHLB_SHIF8 ATP-dependent RNA helicase RhlB OS=Shigella ... 38.1 0.28 sp|A7MQI2|RHLB_CROS8 ATP-dependent RNA helicase RhlB OS=Cronobact... 38.1 0.28 sp|B7LJY3|UVRB_ESCF3 UvrABC system protein B OS=Escherichia fergu... 38.1 0.28 sp|Q32I48|UVRB_SHIDS UvrABC system protein B OS=Shigella dysenter... 38.1 0.28 sp|Q8FJP8|UVRB_ECOL6 UvrABC system protein B OS=Escherichia coli ... 38.1 0.28 sp|Q0TJR9|UVRB_ECOL5 UvrABC system protein B OS=Escherichia coli ... 38.1 0.28 sp|B7MQN2|UVRB_ECO81 UvrABC system protein B OS=Escherichia coli ... 38.1 0.28 sp|B7NNK9|UVRB_ECO7I UvrABC system protein B OS=Escherichia coli ... 38.1 0.28 sp|A3PFD7|UVRB_PROM0 UvrABC system protein B OS=Prochlorococcus m... 38.1 0.29 sp|Q3Z405|UVRB_SHISS UvrABC system protein B OS=Shigella sonnei (... 38.1 0.29 sp|Q324B3|UVRB_SHIBS UvrABC system protein B OS=Shigella boydii s... 38.1 0.29 sp|B2TVF1|UVRB_SHIB3 UvrABC system protein B OS=Shigella boydii s... 38.1 0.29 sp|B4TC52|UVRB_SALHS UvrABC system protein B OS=Salmonella heidel... 38.1 0.29 sp|B5XYX2|UVRB_KLEP3 UvrABC system protein B OS=Klebsiella pneumo... 38.1 0.29 sp|Q1REF1|UVRB_ECOUT UvrABC system protein B OS=Escherichia coli ... 38.1 0.29 sp|B1LM70|UVRB_ECOSM UvrABC system protein B OS=Escherichia coli ... 38.1 0.29 sp|B6I7T4|UVRB_ECOSE UvrABC system protein B OS=Escherichia coli ... 38.1 0.29 sp|B7NA78|UVRB_ECOLU UvrABC system protein B OS=Escherichia coli ... 38.1 0.29 sp|P0A8F8|UVRB_ECOLI UvrABC system protein B OS=Escherichia coli ... 38.1 0.29 sp|B1IXI9|UVRB_ECOLC UvrABC system protein B OS=Escherichia coli ... 38.1 0.29 sp|A1A921|UVRB_ECOK1 UvrABC system protein B OS=Escherichia coli ... 38.1 0.29 sp|A7ZY35|UVRB_ECOHS UvrABC system protein B OS=Escherichia coli ... 38.1 0.29 sp|B1X7A9|UVRB_ECODH UvrABC system protein B OS=Escherichia coli ... 38.1 0.29 sp|C4ZXV1|UVRB_ECOBW UvrABC system protein B OS=Escherichia coli ... 38.1 0.29 sp|B7M751|UVRB_ECO8A UvrABC system protein B OS=Escherichia coli ... 38.1 0.29 sp|B5YRL8|UVRB_ECO5E UvrABC system protein B OS=Escherichia coli ... 38.1 0.29 sp|P0A8F9|UVRB_ECO57 UvrABC system protein B OS=Escherichia coli ... 38.1 0.29 sp|B7LC61|UVRB_ECO55 UvrABC system protein B OS=Escherichia coli ... 38.1 0.29 sp|B7MGN7|UVRB_ECO45 UvrABC system protein B OS=Escherichia coli ... 38.1 0.29 sp|B7ULX6|UVRB_ECO27 UvrABC system protein B OS=Escherichia coli ... 38.1 0.29 sp|A7ZJI8|UVRB_ECO24 UvrABC system protein B OS=Escherichia coli ... 38.1 0.29 sp|B7GSZ2|UVRB_BIFLS UvrABC system protein B OS=Bifidobacterium l... 38.1 0.29 sp|Q8Z889|UVRB_SALTI UvrABC system protein B OS=Salmonella typhi ... 38.1 0.29 sp|A6T6L9|UVRB_KLEP7 UvrABC system protein B OS=Klebsiella pneumo... 38.1 0.29 sp|A1R6F3|UVRB_PAEAT UvrABC system protein B OS=Paenarthrobacter ... 38.1 0.29 sp|Q8XAT4|RHLB_ECO57 ATP-dependent RNA helicase RhlB OS=Escherich... 38.1 0.29 sp|Q9LU46|RH35_ARATH DEAD-box ATP-dependent RNA helicase 35 OS=Ar... 38.1 0.29 sp|Q8ZQQ4|UVRB_SALTY UvrABC system protein B OS=Salmonella typhim... 38.1 0.29 sp|B4TQU3|UVRB_SALSV UvrABC system protein B OS=Salmonella schwar... 38.1 0.29 sp|C0PWY7|UVRB_SALPC UvrABC system protein B OS=Salmonella paraty... 38.1 0.29 sp|A9MTI2|UVRB_SALPB UvrABC system protein B OS=Salmonella paraty... 38.1 0.29 sp|B4SZK1|UVRB_SALNS UvrABC system protein B OS=Salmonella newpor... 38.1 0.29 sp|B5R765|UVRB_SALG2 UvrABC system protein B OS=Salmonella gallin... 38.1 0.29 sp|B5QX69|UVRB_SALEP UvrABC system protein B OS=Salmonella enteri... 38.1 0.29 sp|B5FP65|UVRB_SALDC UvrABC system protein B OS=Salmonella dublin... 38.1 0.29 sp|Q57RF9|UVRB_SALCH UvrABC system protein B OS=Salmonella choler... 38.1 0.29 sp|B5F076|UVRB_SALA4 UvrABC system protein B OS=Salmonella agona ... 38.1 0.29 sp|Q10RI7|RH38_ORYSJ DEAD-box ATP-dependent RNA helicase 38 OS=Or... 38.1 0.29 sp|P57381|MFD_BUCAI Transcription-repair-coupling factor OS=Buchn... 38.1 0.29 sp|B5BC27|UVRB_SALPK UvrABC system protein B OS=Salmonella paraty... 38.1 0.29 sp|Q5PG52|UVRB_SALPA UvrABC system protein B OS=Salmonella paraty... 38.1 0.29 sp|A7GIY3|UVRB_CLOBL UvrABC system protein B OS=Clostridium botul... 38.1 0.30 sp|B1IFX3|UVRB_CLOBK UvrABC system protein B OS=Clostridium botul... 38.1 0.30 sp|A7FYY1|UVRB_CLOB1 UvrABC system protein B OS=Clostridium botul... 38.1 0.30 sp|A4W8C2|UVRB_ENT38 UvrABC system protein B OS=Enterobacter sp. ... 38.1 0.30 sp|A9BD93|UVRB_PROM4 UvrABC system protein B OS=Prochlorococcus m... 38.1 0.30 sp|B1JQ11|RHLB_YERPY ATP-dependent RNA helicase RhlB OS=Yersinia ... 37.7 0.30 sp|Q66G19|RHLB_YERPS ATP-dependent RNA helicase RhlB OS=Yersinia ... 37.7 0.30 sp|A4TRC8|RHLB_YERPP ATP-dependent RNA helicase RhlB OS=Yersinia ... 37.7 0.30 sp|Q1CNK3|RHLB_YERPN ATP-dependent RNA helicase RhlB OS=Yersinia ... 37.7 0.30 sp|Q8ZAD8|RHLB_YERPE ATP-dependent RNA helicase RhlB OS=Yersinia ... 37.7 0.30 sp|B2K046|RHLB_YERPB ATP-dependent RNA helicase RhlB OS=Yersinia ... 37.7 0.30 sp|Q1CBQ4|RHLB_YERPA ATP-dependent RNA helicase RhlB OS=Yersinia ... 37.7 0.30 sp|A7FD47|RHLB_YERP3 ATP-dependent RNA helicase RhlB OS=Yersinia ... 37.7 0.30 sp|C1FMK5|UVRB_CLOBJ UvrABC system protein B OS=Clostridium botul... 38.1 0.30 sp|C3KV20|UVRB_CLOB6 UvrABC system protein B OS=Clostridium botul... 38.1 0.30 sp|Q837R9|UVRB_ENTFA UvrABC system protein B OS=Enterococcus faec... 38.1 0.30 sp|P27639|IF4A_CAEEL Eukaryotic initiation factor 4A OS=Caenorhab... 37.7 0.31 sp|A9MJE1|UVRB_SALAR UvrABC system protein B OS=Salmonella arizon... 38.1 0.31 sp|O51528|RECG_BORBU ATP-dependent DNA helicase RecG OS=Borreliel... 38.1 0.31 sp|Q088J2|RHLB_SHEFN ATP-dependent RNA helicase RhlB OS=Shewanell... 37.7 0.31 sp|A6SFW7|DBP2_BOTFB ATP-dependent RNA helicase dbp2 OS=Botryotin... 38.1 0.32 sp|Q5RC67|DDX23_PONAB Probable ATP-dependent RNA helicase DDX23 O... 38.1 0.32 sp|A8AJ07|UVRB_CITK8 UvrABC system protein B OS=Citrobacter koser... 38.1 0.32 sp|Q7NJH7|UVRB_GLOVI UvrABC system protein B OS=Gloeobacter viola... 38.1 0.32 sp|Q54G57|ASCC3_DICDI Activating signal cointegrator 1 complex su... 38.1 0.32 sp|A8WK63|RECQ1_CAEBR Putative ATP-dependent DNA helicase Q1 OS=C... 38.1 0.33 sp|A1CX72|PRP28_NEOFI Pre-mRNA-splicing ATP-dependent RNA helicas... 38.1 0.33 sp|O59025|HELS_PYRHO ATP-dependent DNA helicase Hel308 OS=Pyrococ... 38.1 0.33 sp|A7E436|DBP8_SCLS1 ATP-dependent RNA helicase dbp8 OS=Sclerotin... 37.7 0.33 sp|Q03JK4|UVRB_STRTD UvrABC system protein B OS=Streptococcus the... 38.1 0.33 sp|Q1C942|UVRB_YERPA UvrABC system protein B OS=Yersinia pestis b... 38.1 0.33 sp|A4TNQ1|UVRB_YERPP UvrABC system protein B OS=Yersinia pestis (... 38.1 0.33 sp|Q1CFQ8|UVRB_YERPN UvrABC system protein B OS=Yersinia pestis b... 38.1 0.33 sp|A9R3D3|UVRB_YERPG UvrABC system protein B OS=Yersinia pestis b... 38.1 0.33 sp|Q8ZGW7|UVRB_YERPE UvrABC system protein B OS=Yersinia pestis O... 38.1 0.33 sp|Q5M3D5|UVRB_STRT2 UvrABC system protein B OS=Streptococcus the... 38.1 0.34 sp|Q5LYS1|UVRB_STRT1 UvrABC system protein B OS=Streptococcus the... 38.1 0.34 sp|A7E449|DBP2_SCLS1 ATP-dependent RNA helicase dbp2 OS=Sclerotin... 37.7 0.34 sp|Q7S5R1|DBP3_NEUCR ATP-dependent RNA helicase dbp-3 OS=Neurospo... 37.7 0.34 sp|Q86B47|Y8611_DROME Probable ATP-dependent RNA helicase CG8611 ... 38.1 0.34 sp|C4K6N8|UVRB_HAMD5 UvrABC system protein B OS=Hamiltonella defe... 38.1 0.34 sp|Q9BUQ8|DDX23_HUMAN Probable ATP-dependent RNA helicase DDX23 O... 38.1 0.34 sp|Q31ES7|UVRB_HYDCU UvrABC system protein B OS=Hydrogenovibrio c... 38.1 0.34 sp|A8GBD1|UVRB_SERP5 UvrABC system protein B OS=Serratia proteama... 37.7 0.35 sp|B1JSR9|UVRB_YERPY UvrABC system protein B OS=Yersinia pseudotu... 37.7 0.35 sp|Q66D62|UVRB_YERPS UvrABC system protein B OS=Yersinia pseudotu... 37.7 0.35 sp|B2K8T5|UVRB_YERPB UvrABC system protein B OS=Yersinia pseudotu... 37.7 0.35 sp|A7FKM4|UVRB_YERP3 UvrABC system protein B OS=Yersinia pseudotu... 37.7 0.35 sp|Q2UQI6|DRS1_ASPOR ATP-dependent RNA helicase drs1 OS=Aspergill... 38.1 0.35 sp|Q7MM80|UVRB_VIBVY UvrABC system protein B OS=Vibrio vulnificus... 37.7 0.35 sp|Q8D891|UVRB_VIBVU UvrABC system protein B OS=Vibrio vulnificus... 37.7 0.35 sp|Q3MSQ8|DDX4_PELLE Probable ATP-dependent RNA helicase DDX4 OS=... 37.7 0.36 sp|Q9NQI0|DDX4_HUMAN Probable ATP-dependent RNA helicase DDX4 OS=... 37.7 0.36 sp|Q5JGV6|HELS_THEKO ATP-dependent DNA helicase Hel308 OS=Thermoc... 38.1 0.36 sp|O02494|IF4A_CRYPV Eukaryotic initiation factor 4A OS=Cryptospo... 37.7 0.36 sp|Q8G5L9|UVRB_BIFLO UvrABC system protein B OS=Bifidobacterium l... 37.7 0.36 sp|Q8RGR2|UVRB_FUSNN UvrABC system protein B OS=Fusobacterium nuc... 37.7 0.36 sp|Q8DHC6|UVRB_THEVB UvrABC system protein B OS=Thermosynechococc... 37.7 0.36 sp|A1JSC3|UVRB_YERE8 UvrABC system protein B OS=Yersinia enteroco... 37.7 0.37 sp|C6DDU0|UVRB_PECCP UvrABC system protein B OS=Pectobacterium ca... 37.7 0.37 sp|B2VBW9|UVRB_ERWT9 UvrABC system protein B OS=Erwinia tasmanien... 37.7 0.37 sp|Q6D3C4|UVRB_PECAS UvrABC system protein B OS=Pectobacterium at... 37.7 0.38 sp|O75417|DPOLQ_HUMAN DNA polymerase theta OS=Homo sapiens OX=960... 38.1 0.38 sp|Q5ZI74|DHX30_CHICK ATP-dependent RNA helicase DHX30 OS=Gallus ... 38.1 0.38 sp|A6SCT6|DBP3_BOTFB ATP-dependent RNA helicase dbp3 OS=Botryotin... 37.7 0.39 sp|A3Q9R3|RHLB_SHELP ATP-dependent RNA helicase RhlB OS=Shewanell... 37.7 0.39 sp|A1DG51|DBP3_NEOFI ATP-dependent RNA helicase dbp3 OS=Neosartor... 37.7 0.39 sp|B4ESU7|UVRB_PROMH UvrABC system protein B OS=Proteus mirabilis... 37.7 0.40 sp|A4R5B8|DBP10_PYRO7 ATP-dependent RNA helicase DBP10 OS=Pyricul... 37.7 0.40 sp|Q5E6B5|UVRB_ALIF1 UvrABC system protein B OS=Aliivibrio fische... 37.7 0.40 sp|B2TQS8|UVRB_CLOBB UvrABC system protein B OS=Clostridium botul... 37.7 0.40 sp|Q7N6Q1|UVRB_PHOLL UvrABC system protein B OS=Photorhabdus laum... 37.7 0.40 sp|A8ACT3|RHLB_CITK8 ATP-dependent RNA helicase RhlB OS=Citrobact... 37.4 0.41 sp|A7EYW0|DBP3_SCLS1 ATP-dependent RNA helicase dbp3 OS=Sclerotin... 37.7 0.41 sp|A7I3X8|UVRB_CAMHC UvrABC system protein B OS=Campylobacter hom... 37.7 0.41 sp|Q8F8A9|UVRB_LEPIN UvrABC system protein B OS=Leptospira interr... 37.7 0.41 sp|Q72N95|UVRB_LEPIC UvrABC system protein B OS=Leptospira interr... 37.7 0.41 sp|A3N031|UVRB_ACTP2 UvrABC system protein B OS=Actinobacillus pl... 37.7 0.42 sp|B2UZZ0|UVRB_CLOBA UvrABC system protein B OS=Clostridium botul... 37.7 0.42 sp|A8G828|RHLB_SERP5 ATP-dependent RNA helicase RhlB OS=Serratia ... 37.4 0.43 sp|Q9V3C0|DDX41_DROME ATP-dependent RNA helicase abstrakt OS=Dros... 37.7 0.43 sp|Q5W5U4|DDX4_BOVIN Probable ATP-dependent RNA helicase DDX4 OS=... 37.7 0.44 sp|Q4UMJ0|MFD_RICFE Transcription-repair-coupling factor OS=Ricke... 37.7 0.44 sp|A7EAY2|MAK5_SCLS1 ATP-dependent RNA helicase mak5 OS=Sclerotin... 37.7 0.45 sp|Q9SZB4|RH43_ARATH Putative DEAD-box ATP-dependent RNA helicase... 37.4 0.46 sp|Q4HZ42|DBP10_GIBZE ATP-dependent RNA helicase DBP10 OS=Gibbere... 37.7 0.46 sp|Q84TG1|RH57_ARATH DEAD-box ATP-dependent RNA helicase 57 OS=Ar... 37.4 0.46 sp|Q4R5S7|DDX4_MACFA Probable ATP-dependent RNA helicase DDX4 OS=... 37.4 0.46 sp|A1DNG2|DBP10_NEOFI ATP-dependent RNA helicase dbp10 OS=Neosart... 37.7 0.47 sp|Q6GWX0|DDX4_PIG Probable ATP-dependent RNA helicase DDX4 OS=Su... 37.4 0.47 sp|Q7UFR2|UVRB_RHOBA UvrABC system protein B OS=Rhodopirellula ba... 37.4 0.48 sp|Q5BFU7|DBP10_EMENI ATP-dependent RNA helicase dbp10 OS=Emerice... 37.4 0.49 sp|E7F8F4|ASCC3_DANRE Activating signal cointegrator 1 complex su... 37.7 0.49 sp|Q9SF41|RH45_ARATH DEAD-box ATP-dependent RNA helicase 45 OS=Ar... 37.4 0.49 sp|Q76PD3|DBP6_SCHPO ATP-dependent RNA helicase dbp6 OS=Schizosac... 37.4 0.49 sp|Q8TKS3|UVRB_METAC UvrABC system protein B OS=Methanosarcina ac... 37.4 0.50 sp|Q9HMT9|UVRB_HALSA UvrABC system protein B OS=Halobacterium sal... 37.4 0.50 sp|Q5X906|UVRB_LEGPA UvrABC system protein B OS=Legionella pneumo... 37.4 0.51 sp|Q4FZF3|DDX49_MOUSE Probable ATP-dependent RNA helicase DDX49 O... 37.4 0.52 sp|Q65ED8|UVRB_BACLD UvrABC system protein B OS=Bacillus lichenif... 37.4 0.52 sp|A5I9P3|UVRB_LEGPC UvrABC system protein B OS=Legionella pneumo... 37.4 0.52 sp|C5BEJ2|UVRB_EDWI9 UvrABC system protein B OS=Edwardsiella icta... 37.4 0.52 sp|Q5X0E6|UVRB_LEGPL UvrABC system protein B OS=Legionella pneumo... 37.4 0.54 sp|O60072|ASCC3_SCHPO RQC trigger complex helicase rqt2 OS=Schizo... 37.4 0.54 sp|Q65N62|CSHA_BACLD DEAD-box ATP-dependent RNA helicase CshA OS=... 37.0 0.55 sp|Q4P7Z8|DBP5_USTMA ATP-dependent RNA helicase DBP5 OS=Ustilago ... 37.0 0.55 sp|C4ZHN1|UVRB_AGARV UvrABC system protein B OS=Agathobacter rect... 37.4 0.55 sp|Q4R8K5|IF4A1_MACFA Eukaryotic initiation factor 4A-I OS=Macaca... 37.0 0.55 sp|Q8N3C0|ASCC3_HUMAN Activating signal cointegrator 1 complex su... 37.4 0.56 sp|Q5ZZD9|UVRB_LEGPH UvrABC system protein B OS=Legionella pneumo... 37.4 0.57 sp|Q9VNV3|DDX1_DROME ATP-dependent RNA helicase Ddx1 OS=Drosophil... 37.4 0.57 sp|Q9CJS1|RHLB_PASMU ATP-dependent RNA helicase RhlB OS=Pasteurel... 37.0 0.58 sp|Q38YA4|UVRB_LATSS UvrABC system protein B OS=Latilactobacillus... 37.4 0.59 sp|O26542|UVRB_METTH UvrABC system protein B OS=Methanothermobact... 37.4 0.59 sp|Q7VLL3|UVRB_HAEDU UvrABC system protein B OS=Haemophilus ducre... 37.4 0.59 sp|A6M2Z0|UVRB_CLOB8 UvrABC system protein B OS=Clostridium beije... 37.0 0.60 sp|A1CNV8|DRS1_ASPCL ATP-dependent RNA helicase drs1 OS=Aspergill... 37.4 0.60 sp|Q7RZH4|MAK5_NEUCR ATP-dependent RNA helicase mak-5 OS=Neurospo... 37.4 0.60 sp|Q6CX73|FAL1_KLULA ATP-dependent RNA helicase FAL1 OS=Kluyverom... 37.0 0.61 sp|Q0IE10|UVRB_SYNS3 UvrABC system protein B OS=Synechococcus sp.... 37.0 0.61 sp|Q650T9|RH7_ORYSJ DEAD-box ATP-dependent RNA helicase 7 OS=Oryz... 37.0 0.61 sp|A1CTZ6|DBP10_ASPCL ATP-dependent RNA helicase dbp10 OS=Aspergi... 37.4 0.62 sp|A0JWN0|UVRB_ARTS2 UvrABC system protein B OS=Arthrobacter sp. ... 37.0 0.62 sp|E1BNG3|ASCC3_BOVIN Activating signal cointegrator 1 complex su... 37.4 0.62 sp|B2VG58|RHLB_ERWT9 ATP-dependent RNA helicase RhlB OS=Erwinia t... 37.0 0.62 sp|Q4I7F9|PRP28_GIBZE Pre-mRNA-splicing ATP-dependent RNA helicas... 37.0 0.64 sp|E9PZJ8|ASCC3_MOUSE Activating signal cointegrator 1 complex su... 37.4 0.64 sp|Q4IJH1|DBP3_GIBZE ATP-dependent RNA helicase DBP3 OS=Gibberell... 37.0 0.65 sp|Q10055|FAL1_SCHPO ATP-dependent RNA helicase fal1 OS=Schizosac... 37.0 0.65 sp|P05470|YKP4_KLULA Uncharacterized killer plasmid pGKL-2 helica... 37.0 0.65 sp|Q54TF8|DDX19_DICDI ATP-dependent RNA helicase ddx19 OS=Dictyos... 37.0 0.65 sp|Q7RYZ7|DBP8_NEUCR ATP-dependent RNA helicase dbp-8 OS=Neurospo... 37.0 0.66 sp|Q6F9D2|UVRB_ACIAD UvrABC system protein B OS=Acinetobacter bay... 37.0 0.66 sp|P73421|RECQ_SYNY3 ATP-dependent DNA helicase RecQ OS=Synechocy... 37.0 0.67 sp|Q2UHC1|DBP10_ASPOR ATP-dependent RNA helicase dbp10 OS=Aspergi... 37.0 0.67 sp|Q8PFZ3|RHLB_XANAC ATP-dependent RNA helicase RhlB OS=Xanthomon... 37.0 0.68 sp|A3GHW9|ROK1_PICST ATP-dependent RNA helicase ROK1 OS=Scheffers... 37.0 0.68 sp|P56996|UVRB_NEIMA UvrABC system protein B OS=Neisseria meningi... 37.0 0.68 sp|O73946|HELS_PYRFU ATP-dependent DNA helicase Hel308 OS=Pyrococ... 37.0 0.69 sp|Q5QXB8|UVRB_IDILO UvrABC system protein B OS=Idiomarina loihie... 37.0 0.71 sp|A7Z985|UVRB_BACVZ UvrABC system protein B OS=Bacillus velezens... 37.0 0.71 sp|P39517|DHH1_YEAST ATP-dependent RNA helicase DHH1 OS=Saccharom... 37.0 0.71 sp|A6ZXG9|DHH1_YEAS7 ATP-dependent RNA helicase DHH1 OS=Saccharom... 37.0 0.71 sp|Q3BNH8|RHLB_XANE5 ATP-dependent RNA helicase RhlB OS=Xanthomon... 37.0 0.71 sp|Q6AF52|UVRB_LEIXX UvrABC system protein B OS=Leifsonia xyli su... 37.0 0.72 sp|A8F8W9|UVRB_PSELT UvrABC system protein B OS=Pseudothermotoga ... 37.0 0.72 sp|F1LPQ2|ASCC3_RAT Activating signal cointegrator 1 complex subu... 37.0 0.72 sp|O13983|HRQ1_SCHPO ATP-dependent helicase hrq1 OS=Schizosacchar... 37.0 0.73 sp|Q50939|UVRB_NEIGO UvrABC system protein B OS=Neisseria gonorrh... 37.0 0.73 sp|Q56243|UVRB_THET8 UvrABC system protein B OS=Thermus thermophi... 37.0 0.75 sp|Q5F931|UVRB_NEIG1 UvrABC system protein B OS=Neisseria gonorrh... 37.0 0.76 sp|Q9PER1|UVRB_XYLFA UvrABC system protein B OS=Xylella fastidios... 37.0 0.77 sp|Q75BS4|DHH1_EREGS ATP-dependent RNA helicase DHH1 OS=Eremothec... 36.6 0.78 sp|Q87AT6|UVRB_XYLFT UvrABC system protein B OS=Xylella fastidios... 36.6 0.79 sp|B2I8F9|UVRB_XYLF2 UvrABC system protein B OS=Xylella fastidios... 36.6 0.79 sp|Q5GUR8|RHLB_XANOR ATP-dependent RNA helicase RhlB OS=Xanthomon... 36.6 0.79 sp|B0U4J3|UVRB_XYLFM UvrABC system protein B OS=Xylella fastidios... 36.6 0.80 sp|Q6A9K7|UVRB_CUTAK UvrABC system protein B OS=Cutibacterium acn... 36.6 0.83 sp|Q47QN5|UVRB_THEFY UvrABC system protein B OS=Thermobifida fusc... 36.6 0.84 sp|Q2NGT1|UVRB_METST UvrABC system protein B OS=Methanosphaera st... 36.6 0.86 sp|Q8P4D4|RHLB_XANCP ATP-dependent RNA helicase RhlB OS=Xanthomon... 36.6 0.86 sp|B0RWT6|RHLB_XANCB ATP-dependent RNA helicase RhlB OS=Xanthomon... 36.6 0.86 sp|Q4UPY5|RHLB_XANC8 ATP-dependent RNA helicase RhlB OS=Xanthomon... 36.6 0.86 sp|Q3ATT8|UVRB_CHLCH UvrABC system protein B OS=Chlorobium chloro... 36.6 0.87 sp|Q928A4|UVRB_LISIN UvrABC system protein B OS=Listeria innocua ... 36.6 0.88 sp|Q67T57|UVRB_SYMTH UvrABC system protein B OS=Symbiobacterium t... 36.6 0.88 sp|Q8Y4F5|UVRB_LISMO UvrABC system protein B OS=Listeria monocyto... 36.6 0.90 sp|Q8SR01|DBP4_ENCCU ATP-dependent RNA helicase DBP4 OS=Encephali... 36.6 0.90 sp|Q71WT9|UVRB_LISMF UvrABC system protein B OS=Listeria monocyto... 36.6 0.91 sp|Q4HVW2|SPB4_GIBZE ATP-dependent rRNA helicase SPB4 OS=Gibberel... 36.6 0.91 sp|Q58524|HELS_METJA ATP-dependent DNA helicase Hel308 OS=Methano... 36.6 0.91 sp|Q6FQQ6|IF4A_CANGA ATP-dependent RNA helicase eIF4A OS=Candida ... 36.2 0.92 sp|O33395|UVRB_NEIMB UvrABC system protein B OS=Neisseria meningi... 36.6 0.92 sp|Q2NJ77|UVRB_AYWBP UvrABC system protein B OS=Aster yellows wit... 36.6 0.94 sp|Q971U1|XPB1_SULTO DNA 3'-5' helicase/translocase StoXPB1 OS=Su... 36.6 0.95 sp|Q0UG00|MS116_PHANO ATP-dependent RNA helicase MSS116, mitochon... 36.6 0.96 sp|Q6YQE1|UVRB_ONYPE UvrABC system protein B OS=Onion yellows phy... 36.6 0.96 sp|Q3AFF4|UVRB_CARHZ UvrABC system protein B OS=Carboxydothermus ... 36.6 0.99 sp|B7IEY7|UVRB_THEAB UvrABC system protein B OS=Thermosipho afric... 36.6 1.0 sp|Q5Z6G5|RH35B_ORYSJ DEAD-box ATP-dependent RNA helicase 35B OS=... 36.2 1.0 sp|P60843|IF4A1_MOUSE Eukaryotic initiation factor 4A-I OS=Mus mu... 36.2 1.0 sp|P60842|IF4A1_HUMAN Eukaryotic initiation factor 4A-I OS=Homo s... 36.2 1.0 sp|Q3SZ54|IF4A1_BOVIN Eukaryotic initiation factor 4A-I OS=Bos ta... 36.2 1.0 sp|A5DLR3|DBP10_PICGU ATP-dependent RNA helicase DBP10 OS=Meyeroz... 36.6 1.1 sp|P29562|IF4A1_RABIT Eukaryotic initiation factor 4A-I (Fragment... 36.2 1.1 sp|A9B464|UVRB_HERA2 UvrABC system protein B OS=Herpetosiphon aur... 36.2 1.1 sp|A6UN73|HELS_METVS ATP-dependent DNA helicase Hel308 OS=Methano... 36.2 1.1 sp|Q1EB38|DBP10_COCIM ATP-dependent RNA helicase DBP10 OS=Coccidi... 36.2 1.1 sp|Q5R5F5|IF4A1_PONAB Eukaryotic initiation factor 4A-I OS=Pongo ... 36.2 1.1 sp|A5A6N4|IF4A1_PANTR Eukaryotic initiation factor 4A-I OS=Pan tr... 36.2 1.1 sp|A1CFV3|DBP5_ASPCL ATP-dependent RNA helicase dbp5 OS=Aspergill... 36.2 1.1 sp|O74393|MAK5_SCHPO ATP-dependent RNA helicase mak5 OS=Schizosac... 36.2 1.1 sp|Q6BP45|ROK1_DEBHA ATP-dependent RNA helicase ROK1 OS=Debaryomy... 36.2 1.1 sp|Q8VDW0|DX39A_MOUSE ATP-dependent RNA helicase DDX39A OS=Mus mu... 36.2 1.2 sp|Q10I26|IF43B_ORYSJ Eukaryotic initiation factor 4A-III homolog... 35.8 1.2 sp|Q5VNM3|IF43A_ORYSJ Eukaryotic initiation factor 4A-III homolog... 35.8 1.2 sp|Q5U216|DX39A_RAT ATP-dependent RNA helicase DDX39A OS=Rattus n... 36.2 1.2 sp|F1LNJ2|U520_RAT U5 small nuclear ribonucleoprotein 200 kDa hel... 36.6 1.2 sp|P0CR06|DBP10_CRYNJ ATP-dependent RNA helicase DBP10 OS=Cryptoc... 36.2 1.2 sp|P0CR07|DBP10_CRYNB ATP-dependent RNA helicase DBP10 OS=Cryptoc... 36.2 1.2 sp|O00148|DX39A_HUMAN ATP-dependent RNA helicase DDX39A OS=Homo s... 35.8 1.2 sp|Q9LFN6|RH56_ARATH DEAD-box ATP-dependent RNA helicase 56 OS=Ar... 35.8 1.2 sp|Q56XG6|RH15_ARATH DEAD-box ATP-dependent RNA helicase 15 OS=Ar... 35.8 1.2 sp|Q1E5R1|DHH1_COCIM ATP-dependent RNA helicase DHH1 OS=Coccidioi... 36.2 1.2 sp|Q6P4T2|U520_MOUSE U5 small nuclear ribonucleoprotein 200 kDa h... 36.2 1.2 sp|A2QRY2|DBP10_ASPNC ATP-dependent RNA helicase dbp10 OS=Aspergi... 36.2 1.2 sp|Q6BT27|FAL1_DEBHA ATP-dependent RNA helicase FAL1 OS=Debaryomy... 35.8 1.2 sp|Q9W3Y5|Y4443_DROME Putative ATP-dependent RNA helicase CG14443... 36.2 1.3 sp|Q0CL13|DBP3_ASPTN ATP-dependent RNA helicase dbp3 OS=Aspergill... 35.8 1.3 sp|Q6CIR0|DBP10_KLULA ATP-dependent RNA helicase DBP10 OS=Kluyver... 36.2 1.3 sp|Q1EB85|DBP5_COCIM ATP-dependent RNA helicase DBP5 OS=Coccidioi... 35.8 1.3 sp|A5A6J2|DDX5_PANTR Probable ATP-dependent RNA helicase DDX5 OS=... 36.2 1.3 sp|Q5ANB2|DBP10_CANAL ATP-dependent RNA helicase DBP10 OS=Candida... 36.2 1.3 sp|Q5R4I9|DDX5_PONAB Probable ATP-dependent RNA helicase DDX5 OS=... 36.2 1.3 sp|C5BV49|UVRB_BEUC1 UvrABC system protein B OS=Beutenbergia cave... 36.2 1.3 sp|Q6C0X2|DHH1_YARLI ATP-dependent RNA helicase DHH1 OS=Yarrowia ... 35.8 1.3 sp|Q61656|DDX5_MOUSE Probable ATP-dependent RNA helicase DDX5 OS=... 35.8 1.3 sp|Q94A52|RH2_ARATH Eukaryotic initiation factor 4A-III homolog O... 35.8 1.4 sp|P17844|DDX5_HUMAN Probable ATP-dependent RNA helicase DDX5 OS=... 35.8 1.4 sp|A7HKC0|UVRB_FERNB UvrABC system protein B OS=Fervidobacterium ... 35.8 1.4 sp|A3GFV3|FAL1_PICST ATP-dependent RNA helicase FAL1 OS=Scheffers... 35.8 1.4 sp|Q7VFX7|UVRB_HELHP UvrABC system protein B OS=Helicobacter hepa... 35.8 1.4 sp|Q8GXD6|RH49_ARATH DEAD-box ATP-dependent RNA helicase 49 OS=Ar... 35.8 1.4 sp|Q9Y2R4|DDX52_HUMAN Probable ATP-dependent RNA helicase DDX52 O... 35.8 1.4 sp|Q821H8|UVRB_CHLCV UvrABC system protein B OS=Chlamydia caviae ... 35.8 1.4 sp|B3EMK1|UVRB_CHLPB UvrABC system protein B OS=Chlorobium phaeob... 35.8 1.4 sp|Q4IF76|DBP2_GIBZE ATP-dependent RNA helicase DBP2 OS=Gibberell... 35.8 1.5 sp|Q0U8V9|DBP8_PHANO ATP-dependent RNA helicase DBP8 OS=Phaeospha... 35.8 1.5 sp|P0CQ72|FAL1_CRYNJ ATP-dependent RNA helicase FAL1 OS=Cryptococ... 35.8 1.5 sp|P0CQ73|FAL1_CRYNB ATP-dependent RNA helicase FAL1 OS=Cryptococ... 35.8 1.5 sp|A7TJ36|DBP3_VANPO ATP-dependent RNA helicase DBP3 OS=Vanderwal... 35.8 1.5 sp|B7J0S9|UVRB_BORBZ UvrABC system protein B OS=Borreliella burgd... 35.8 1.5 sp|A5CRU3|UVRB_CLAM3 UvrABC system protein B OS=Clavibacter michi... 35.8 1.5 sp|Q59ZH9|MAK5_CANAL ATP-dependent RNA helicase MAK5 OS=Candida a... 35.8 1.5 sp|Q9H8H2|DDX31_HUMAN ATP-dependent DNA helicase DDX31 OS=Homo sa... 35.8 1.6 sp|O51776|UVRB_BORBU UvrABC system protein B OS=Borreliella burgd... 35.8 1.6 sp|Q2HFP1|IF4A_CHAGB ATP-dependent RNA helicase eIF4A OS=Chaetomi... 35.4 1.6 sp|Q65ZT8|UVRB_BORGP UvrABC system protein B OS=Borrelia garinii ... 35.8 1.6 sp|A2QFL3|DBP3_ASPNC ATP-dependent RNA helicase dbp3 OS=Aspergill... 35.8 1.6 sp|B0RES6|UVRB_CLASE UvrABC system protein B OS=Clavibacter seped... 35.8 1.6 sp|Q6CDV4|IF4A_YARLI ATP-dependent RNA helicase eIF4A OS=Yarrowia... 35.4 1.6 sp|A5D7C1|DDX52_BOVIN Probable ATP-dependent RNA helicase DDX52 O... 35.8 1.6 sp|Q8JFP1|IF4A2_CHICK Eukaryotic initiation factor 4A-II OS=Gallu... 35.4 1.6 sp|A1C5V3|DBP3_ASPCL ATP-dependent RNA helicase dbp3 OS=Aspergill... 35.8 1.6 sp|Q07886|DDX49_DROME Probable ATP-dependent RNA helicase Dbp45A ... 35.8 1.6 sp|A7TK55|IF4A_VANPO ATP-dependent RNA helicase eIF4A OS=Vanderwa... 35.4 1.6 sp|O75643|U520_HUMAN U5 small nuclear ribonucleoprotein 200 kDa h... 35.8 1.6 sp|Q4R4Y9|IF4A2_MACFA Eukaryotic initiation factor 4A-II OS=Macac... 35.4 1.6 sp|Q5A9Z6|FAL1_CANAL ATP-dependent RNA helicase FAL1 OS=Candida a... 35.4 1.6 sp|Q1MTR1|IRC3_SCHPO Putative mitochondrial ATP-dependent helicas... 35.8 1.6 sp|Q5RKI1|IF4A2_RAT Eukaryotic initiation factor 4A-II OS=Rattus ... 35.4 1.7 sp|Q5R4X1|IF4A2_PONAB Eukaryotic initiation factor 4A-II OS=Pongo... 35.4 1.7 sp|P10630|IF4A2_MOUSE Eukaryotic initiation factor 4A-II OS=Mus m... 35.4 1.7 sp|Q14240|IF4A2_HUMAN Eukaryotic initiation factor 4A-II OS=Homo ... 35.4 1.7 sp|Q3SZ65|IF4A2_BOVIN Eukaryotic initiation factor 4A-II OS=Bos t... 35.4 1.7 sp|Q6FKN8|DBP5_CANGA ATP-dependent RNA helicase DBP5 OS=Candida g... 35.4 1.7 sp|A1AZF8|SYGB_PARDP Glycine--tRNA ligase beta subunit OS=Paracoc... 35.8 1.7 sp|Q4PDT1|DBP3_USTMA ATP-dependent RNA helicase DBP3 OS=Ustilago ... 35.4 1.7 sp|A7TJM9|DRS1_VANPO ATP-dependent RNA helicase DRS1 OS=Vanderwal... 35.8 1.7 sp|Q7XJN0|RH17_ARATH DEAD-box ATP-dependent RNA helicase 17 OS=Ar... 35.4 1.8 sp|Q0SM15|UVRB_BORAP UvrABC system protein B OS=Borreliella afzel... 35.4 1.8 sp|P15043|RECQ_ECOLI ATP-dependent DNA helicase RecQ OS=Escherich... 35.4 1.8 sp|B2SUN1|UVRB_XANOP UvrABC system protein B OS=Xanthomonas oryza... 35.4 1.9 sp|Q2P0Z3|UVRB_XANOM UvrABC system protein B OS=Xanthomonas oryza... 35.4 1.9 sp|Q12099|FAL1_YEAST ATP-dependent RNA helicase FAL1 OS=Saccharom... 35.4 1.9 sp|A6ZXY5|FAL1_YEAS7 ATP-dependent RNA helicase FAL1 OS=Saccharom... 35.4 1.9 sp|B0RRD9|UVRB_XANCB UvrABC system protein B OS=Xanthomonas campe... 35.4 1.9 sp|A0AKW5|DCUP_LISW6 Uroporphyrinogen decarboxylase OS=Listeria w... 35.0 1.9 sp|Q890X8|UVRB_CLOTE UvrABC system protein B OS=Clostridium tetan... 35.4 1.9 sp|Q3IKF4|UVRB_PSET1 UvrABC system protein B OS=Pseudoalteromonas... 35.4 1.9 sp|Q4R6M5|DDX5_MACFA Probable ATP-dependent RNA helicase DDX5 OS=... 35.4 1.9 sp|Q5GXX4|UVRB_XANOR UvrABC system protein B OS=Xanthomonas oryza... 35.4 1.9 sp|Q0CMM8|DBP10_ASPTN ATP-dependent RNA helicase dbp10 OS=Aspergi... 35.4 1.9 sp|Q8P7X1|UVRB_XANCP UvrABC system protein B OS=Xanthomonas campe... 35.4 1.9 sp|Q4UW79|UVRB_XANC8 UvrABC system protein B OS=Xanthomonas campe... 35.4 1.9 sp|Q4IPI1|ROK1_GIBZE ATP-dependent RNA helicase ROK1 OS=Gibberell... 35.4 1.9 sp|P0C2N7|DRS1_CHAGB ATP-dependent RNA helicase DRS1 OS=Chaetomiu... 35.4 2.0 sp|Q8PJB1|UVRB_XANAC UvrABC system protein B OS=Xanthomonas axono... 35.4 2.0 sp|A5E1N2|ROK1_LODEL ATP-dependent RNA helicase ROK1 OS=Lodderomy... 35.4 2.0 sp|P20449|DBP5_YEAST ATP-dependent RNA helicase DBP5 OS=Saccharom... 35.4 2.0 sp|A6ZNQ1|DBP5_YEAS7 ATP-dependent RNA helicase DBP5 OS=Saccharom... 35.4 2.0 sp|Q9PJF4|UVRB_CHLMU UvrABC system protein B OS=Chlamydia muridar... 35.4 2.0 sp|Q8K301|DDX52_MOUSE Probable ATP-dependent RNA helicase DDX52 O... 35.4 2.1 sp|Q8RXK6|RH8_ARATH DEAD-box ATP-dependent RNA helicase 8 OS=Arab... 35.4 2.1 sp|A5DS77|DBP2_LODEL ATP-dependent RNA helicase DBP2 OS=Lodderomy... 35.4 2.1 sp|Q9FT69|RQSIM_ARATH ATP-dependent DNA helicase Q-like SIM OS=Ar... 35.4 2.2 sp|Q7S9J4|DBP10_NEUCR ATP-dependent RNA helicase dbp-10 OS=Neuros... 35.4 2.2 sp|Q9U2G0|U520_CAEEL U5 small nuclear ribonucleoprotein 200 kDa h... 35.4 2.2 sp|Q86TM3|DDX53_HUMAN Probable ATP-dependent RNA helicase DDX53 O... 35.4 2.2 sp|Q8KC79|UVRB_CHLTE UvrABC system protein B OS=Chlorobaculum tep... 35.4 2.2 sp|Q8SRB2|DBP2_ENCCU ATP-dependent RNA helicase DBP2 OS=Encephali... 35.0 2.3 sp|Q72BN0|UVRB_NITV2 UvrABC system protein B OS=Nitratidesulfovib... 35.4 2.3 sp|Q6C7X8|DBP10_YARLI ATP-dependent RNA helicase DBP10 OS=Yarrowi... 35.4 2.3 sp|A1VDN0|UVRB_NITV4 UvrABC system protein B OS=Nitratidesulfovib... 35.4 2.3 sp|Q99PT0|DDX52_RAT Probable ATP-dependent RNA helicase DDX52 OS=... 35.0 2.4 sp|Q83NI7|UVRB_TROW8 UvrABC system protein B OS=Tropheryma whippl... 35.0 2.4 sp|P94846|UVRB_HELPY UvrABC system protein B OS=Helicobacter pylo... 35.0 2.4 sp|Q6NZQ2|DDX31_MOUSE ATP-dependent DNA helicase DDX31 OS=Mus mus... 35.0 2.5 sp|Q71XF3|DCUP_LISMF Uroporphyrinogen decarboxylase OS=Listeria m... 35.0 2.5 sp|Q1CSF2|UVRB_HELPH UvrABC system protein B OS=Helicobacter pylo... 35.0 2.5 sp|O26066|MFD_HELPY Transcription-repair-coupling factor OS=Helic... 35.4 2.5 sp|C1KXG7|DCUP_LISMC Uroporphyrinogen decarboxylase OS=Listeria m... 34.7 2.5 sp|B8G8R1|UVRB_CHLAD UvrABC system protein B OS=Chloroflexus aggr... 35.0 2.5 sp|C1A4H0|UVRB_GEMAT UvrABC system protein B OS=Gemmatimonas aura... 35.0 2.6 sp|Q9HPZ2|RAD25_HALSA Putative DNA 3'-5' helicase Rad25 OS=Haloba... 35.0 2.6 sp|Q9UMR2|DD19B_HUMAN ATP-dependent RNA helicase DDX19B OS=Homo s... 35.0 2.6 sp|Q73MY7|UVRB_TREDE UvrABC system protein B OS=Treponema dentico... 35.0 2.6 sp|Q9M2E0|RH12_ARATH DEAD-box ATP-dependent RNA helicase 12 OS=Ar... 35.0 2.7 sp|Q6BRE4|DBP5_DEBHA ATP-dependent RNA helicase DBP5 OS=Debaryomy... 35.0 2.7 sp|Q9ZJ57|MFD_HELPJ Transcription-repair-coupling factor OS=Helic... 35.0 2.7 sp|Q95YF3|CGH1_CAEEL ATP-dependent RNA helicase cgh-1 OS=Caenorha... 35.0 2.7 sp|Q042E2|UVRB_LACGA UvrABC system protein B OS=Lactobacillus gas... 35.0 2.7 sp|P41381|IF4A8_TOBAC Eukaryotic initiation factor 4A-8 OS=Nicoti... 34.7 2.7 sp|Q27268|DX39B_DROME ATP-dependent RNA helicase WM6 OS=Drosophil... 34.7 2.8 sp|Q9NUU7|DD19A_HUMAN ATP-dependent RNA helicase DDX19A OS=Homo s... 35.0 2.8 sp|Q61655|DD19A_MOUSE ATP-dependent RNA helicase DDX19A OS=Mus mu... 34.7 2.9 sp|P24125|V51K_BPL79 51.5 kDa protein OS=Lactococcus phage (isola... 34.7 2.9 sp|Q887N8|RHLB_PSESM ATP-dependent RNA helicase RhlB OS=Pseudomon... 34.7 2.9 sp|A2QAX7|DRS1_ASPNC ATP-dependent RNA helicase drs1 OS=Aspergill... 35.0 2.9 sp|A7TGU7|DHH1_VANPO ATP-dependent RNA helicase DHH1 OS=Vanderwal... 34.7 2.9 sp|O01836|GLH3_CAEEL ATP-dependent RNA helicase glh-3 OS=Caenorha... 35.0 3.0 sp|Q6FU81|MS116_CANGA ATP-dependent RNA helicase MSS116, mitochon... 35.0 3.0 sp|A1SAL1|RHLB_SHEAM ATP-dependent RNA helicase RhlB OS=Shewanell... 34.7 3.0 sp|A3BT52|RH29_ORYSJ DEAD-box ATP-dependent RNA helicase 29 OS=Or... 35.0 3.0 sp|A7TGW7|DBP10_VANPO ATP-dependent RNA helicase DBP10 OS=Vanderw... 35.0 3.1 sp|Q6FNA2|DBP10_CANGA ATP-dependent RNA helicase DBP10 OS=Candida... 35.0 3.1 sp|Q9Z7A5|UVRB_CHLPN UvrABC system protein B OS=Chlamydia pneumon... 34.7 3.1 sp|Q17YL7|UVRB_HELAH UvrABC system protein B OS=Helicobacter acin... 34.7 3.1 sp|Q5BCI0|MAK5_EMENI ATP-dependent RNA helicase mak5 OS=Emericell... 35.0 3.1 sp|Q747K3|UVRB_GEOSL UvrABC system protein B OS=Geobacter sulfurr... 34.7 3.1 sp|A1BI09|UVRB_CHLPD UvrABC system protein B OS=Chlorobium phaeob... 34.7 3.2 sp|Q3ZBV2|DD19A_BOVIN ATP-dependent RNA helicase DDX19A OS=Bos ta... 34.7 3.2 sp|Q40469|IF4A6_TOBAC Eukaryotic initiation factor 4A-6 (Fragment... 34.3 3.2 sp|Q2UST1|MS116_ASPOR ATP-dependent RNA helicase mss116, mitochon... 34.7 3.2 sp|A2YV85|RH29_ORYSI DEAD-box ATP-dependent RNA helicase 29 OS=Or... 35.0 3.2 sp|A5DL80|DBP2_PICGU ATP-dependent RNA helicase DBP2 OS=Meyerozym... 34.7 3.2 sp|A5DZX2|DBP5_LODEL ATP-dependent RNA helicase DBP5 OS=Lodderomy... 34.7 3.3 sp|Q8L4E9|RH36_ORYSJ DEAD-box ATP-dependent RNA helicase 36 OS=Or... 34.7 3.3 sp|Q9ZKA0|UVRB_HELPJ UvrABC system protein B OS=Helicobacter pylo... 34.7 3.3 sp|Q94BV4|RH6_ARATH DEAD-box ATP-dependent RNA helicase 6 OS=Arab... 34.7 3.3 sp|Q54BD6|DDX51_DICDI Probable ATP-dependent RNA helicase ddx51 O... 34.7 3.3 sp|B4GEU5|SPNE_DROPE Probable ATP-dependent RNA helicase spindle-... 35.0 3.3 sp|Q6CWQ5|MRH4_KLULA ATP-dependent RNA helicase MRH4, mitochondri... 34.7 3.4 sp|O34750|YFML_BACSU Probable ATP-dependent RNA helicase YfmL OS=... 34.3 3.4 sp|P40724|RECQ_SALTY ATP-dependent DNA helicase RecQ OS=Salmonell... 34.7 3.4 sp|Q9VVK8|DDX52_DROME Probable ATP-dependent RNA helicase DDX52 O... 34.7 3.5 sp|A9WT85|UVRB_RENSM UvrABC system protein B OS=Renibacterium sal... 34.7 3.6 sp|Q2UMH8|DBP3_ASPOR ATP-dependent RNA helicase dbp3 OS=Aspergill... 34.7 3.6 sp|Q829Y6|UVRB_STRAW UvrABC system protein B OS=Streptomyces aver... 34.7 3.7 sp|A5DB98|IF4A_PICGU ATP-dependent RNA helicase eIF4A OS=Meyerozy... 34.3 3.7 sp|B2S264|UVRB_TREPS UvrABC system protein B OS=Treponema pallidu... 34.7 3.7 sp|O83154|UVRB_TREPA UvrABC system protein B OS=Treponema pallidu... 34.7 3.7 sp|Q929G1|DCUP_LISIN Uroporphyrinogen decarboxylase OS=Listeria i... 34.3 3.7 sp|Q1RI82|MFD_RICBR Transcription-repair-coupling factor OS=Ricke... 34.7 3.8 sp|Q30ZK3|UVRB_OLEA2 UvrABC system protein B OS=Oleidesulfovibrio... 34.7 3.8 sp|Q81DF9|CSHE_BACCR DEAD-box ATP-dependent RNA helicase CshE OS=... 34.3 3.9 sp|P0CQ94|DBP7_CRYNJ ATP-dependent RNA helicase DBP7 OS=Cryptococ... 34.7 3.9 sp|P0CQ95|DBP7_CRYNB ATP-dependent RNA helicase DBP7 OS=Cryptococ... 34.7 3.9 sp|Q8CK11|UVRB_STRCO UvrABC system protein B OS=Streptomyces coel... 34.7 3.9 sp|Q03AL7|UVRB_LACP3 UvrABC system protein B OS=Lacticaseibacillu... 34.7 4.0 sp|B3WCQ5|UVRB_LACCB UvrABC system protein B OS=Lacticaseibacillu... 34.7 4.0 sp|Q74K90|UVRB_LACJO UvrABC system protein B OS=Lactobacillus joh... 34.3 4.1 sp|A3LQW7|DBP2_PICST ATP-dependent RNA helicase DBP2 OS=Scheffers... 34.3 4.1 sp|O76743|GLH4_CAEEL ATP-dependent RNA helicase glh-4 OS=Caenorha... 34.7 4.2 sp|Q757U8|DBP10_EREGS ATP-dependent RNA helicase DBP10 OS=Eremoth... 34.7 4.3 sp|A7TEF4|FAL1_VANPO ATP-dependent RNA helicase FAL1 OS=Vanderwal... 34.3 4.3 sp|B8DF98|DCUP_LISMH Uroporphyrinogen decarboxylase OS=Listeria m... 33.9 4.4 sp|A1CTL8|MAK5_ASPCL ATP-dependent RNA helicase mak5 OS=Aspergill... 34.3 4.4 sp|P10081|IF4A_YEAST ATP-dependent RNA helicase eIF4A OS=Saccharo... 34.3 4.5 sp|A6ZQJ1|IF4A_YEAS7 ATP-dependent RNA helicase eIF4A OS=Saccharo... 34.3 4.5 sp|Q6FY67|MAK5_CANGA ATP-dependent RNA helicase MAK5 OS=Candida g... 34.3 4.5 sp|Q0E2Q3|IF4A2_ORYSJ Putative eukaryotic initiation factor 4A-2 ... 34.3 4.5 sp|Q9VUV9|U520_DROME U5 small nuclear ribonucleoprotein 200 kDa h... 34.7 4.6 sp|Q12389|DBP10_YEAST ATP-dependent RNA helicase DBP10 OS=Sacchar... 34.3 4.6 sp|A6ZXU0|DBP10_YEAS7 ATP-dependent RNA helicase DBP10 OS=Sacchar... 34.3 4.6 sp|Q3Z9B4|UVRB_DEHM1 UvrABC system protein B OS=Dehalococcoides m... 34.3 4.7 sp|P9WFC7|UVRB_MYCTU UvrABC system protein B OS=Mycobacterium tub... 34.3 4.8 sp|P9WFC6|UVRB_MYCTO UvrABC system protein B OS=Mycobacterium tub... 34.3 4.8 sp|P67423|UVRB_MYCBO UvrABC system protein B OS=Mycobacterium bov... 34.3 4.8 sp|Q3ZZK7|UVRB_DEHMC UvrABC system protein B OS=Dehalococcoides m... 34.3 4.8 sp|Q4WWD3|DHH1_ASPFU ATP-dependent RNA helicase dhh1 OS=Aspergill... 34.3 4.8 sp|A5E2I8|SPB4_LODEL ATP-dependent rRNA helicase SPB4 OS=Lodderom... 34.3 4.8 sp|Q0CBE1|DHH1_ASPTN ATP-dependent RNA helicase dhh1 OS=Aspergill... 34.3 4.8 sp|Q6CSZ7|DHH1_KLULA ATP-dependent RNA helicase DHH1 OS=Kluyverom... 34.3 4.9 sp|Q109G2|RH12_ORYSJ DEAD-box ATP-dependent RNA helicase 12 OS=Or... 34.3 5.0 sp|Q9FNQ1|DEXHE_ARATH DExH-box ATP-dependent RNA helicase DExH14 ... 34.3 5.0 sp|A1D8G1|DHH1_NEOFI ATP-dependent RNA helicase dhh1 OS=Neosartor... 33.9 5.0 sp|Q6CDS6|ROK1_YARLI ATP-dependent RNA helicase ROK1 OS=Yarrowia ... 34.3 5.0 sp|P34668|YO12_CAEEL Putative ATP-dependent RNA helicase ZK686.2 ... 33.9 5.2 sp|A2QY39|DHH1_ASPNC ATP-dependent RNA helicase dhh1 OS=Aspergill... 33.9 5.2 sp|Q6CXT4|IF4A_KLULA ATP-dependent RNA helicase eIF4A OS=Kluyvero... 33.9 5.2 sp|Q2GQ93|DHH1_CHAGB ATP-dependent RNA helicase DHH1 OS=Chaetomiu... 33.9 5.2 sp|A1CJ18|DHH1_ASPCL ATP-dependent RNA helicase dhh1 OS=Aspergill... 33.9 5.3 sp|Q0U7S9|DHH1_PHANO ATP-dependent RNA helicase DHH1 OS=Phaeospha... 33.9 5.4 sp|Q1E306|ROK1_COCIM ATP-dependent RNA helicase ROK1 OS=Coccidioi... 33.9 5.5 sp|Q6FL17|SUB2_CANGA ATP-dependent RNA helicase SUB2 OS=Candida g... 33.9 5.5 sp|Q6BJX6|DHH1_DEBHA ATP-dependent RNA helicase DHH1 OS=Debaryomy... 33.9 5.6 sp|Q9SYP1|DEXHC_ARATH DExH-box ATP-dependent RNA helicase DExH12 ... 34.3 5.6 sp|A5DBI5|DBP5_PICGU ATP-dependent RNA helicase DBP5 OS=Meyerozym... 33.9 5.6 sp|A6R9U4|MAK5_AJECN ATP-dependent RNA helicase MAK5 OS=Ajellomyc... 33.9 5.8 sp|Q2HEB0|PRP28_CHAGB Pre-mRNA-splicing ATP-dependent RNA helicas... 33.9 5.8 sp|Q0E2Z7|RH41_ORYSJ DEAD-box ATP-dependent RNA helicase 41 OS=Or... 33.9 6.0 sp|Q5L4S6|UVRB_CHLAB UvrABC system protein B OS=Chlamydia abortus... 33.9 6.1 sp|Q7L2E3|DHX30_HUMAN ATP-dependent RNA helicase DHX30 OS=Homo sa... 33.9 6.1 sp|Q5ZHZ0|DX39B_CHICK Spliceosome RNA helicase DDX39B OS=Gallus g... 33.9 6.1 sp|Q63413|DX39B_RAT Spliceosome RNA helicase Ddx39b OS=Rattus nor... 33.5 6.3 sp|Q9Z1N5|DX39B_MOUSE Spliceosome RNA helicase Ddx39b OS=Mus musc... 33.5 6.3 sp|A3LZT3|DBP10_PICST ATP-dependent RNA helicase DBP10 OS=Scheffe... 33.9 6.4 sp|Q3T147|DX39B_BOVIN Spliceosome RNA helicase DDX39B OS=Bos taur... 33.5 6.4 sp|Q09747|DBP5_SCHPO ATP-dependent RNA helicase dbp5 OS=Schizosac... 33.9 6.4 sp|Q6MS38|UVRB_MYCMS UvrABC system protein B OS=Mycoplasma mycoid... 33.9 6.5 sp|O80902|CIPKM_ARATH CBL-interacting serine/threonine-protein ki... 33.5 6.5 sp|A6R3R5|IF4A_AJECN ATP-dependent RNA helicase eIF4A OS=Ajellomy... 33.5 6.5 sp|Q5RE47|DX39B_PONAB Spliceosome RNA helicase DDX39B OS=Pongo ab... 33.5 6.6 sp|Q29024|DX39B_PIG Spliceosome RNA helicase DDX39B OS=Sus scrofa... 33.5 6.6 sp|P60024|DX39B_PANTR Spliceosome RNA helicase DDX39B OS=Pan trog... 33.5 6.6 sp|Q5TM17|DX39B_MACMU Spliceosome RNA helicase DDX39B OS=Macaca m... 33.5 6.6 sp|Q13838|DX39B_HUMAN Spliceosome RNA helicase DDX39B OS=Homo sap... 33.5 6.6 sp|Q7N8V1|RAPA_PHOLL RNA polymerase-associated protein RapA OS=Ph... 33.9 6.6 sp|Q2NKY8|DHX30_BOVIN ATP-dependent RNA helicase DHX30 OS=Bos tau... 33.9 6.6 sp|Q5WR10|DX39B_CANLF Spliceosome RNA helicase DDX39B OS=Canis lu... 33.5 6.7 sp|Q5AJD0|DBP5_CANAL ATP-dependent RNA helicase DBP5 OS=Candida a... 33.5 6.7 sp|A4R715|DHH1_PYRO7 ATP-dependent RNA helicase DHH1 OS=Pyricular... 33.5 6.8 sp|A5DIX5|ROK1_PICGU ATP-dependent RNA helicase ROK1 OS=Meyerozym... 33.5 6.8 sp|Q18212|DX39B_CAEEL Spliceosome RNA helicase DDX39B homolog OS=... 33.5 6.8 sp|Q0DBS1|RH51_ORYSJ Putative DEAD-box ATP-dependent RNA helicase... 33.5 6.8 sp|Q89RY1|AROC_BRADU Chorismate synthase OS=Bradyrhizobium diazoe... 33.5 6.9 sp|Q6BME5|SUB2_DEBHA ATP-dependent RNA helicase SUB2 OS=Debaryomy... 33.5 6.9 sp|P0CQ70|IF4A_CRYNJ ATP-dependent RNA helicase eIF4A OS=Cryptoco... 33.5 7.0 sp|P0CQ71|IF4A_CRYNB ATP-dependent RNA helicase eIF4A OS=Cryptoco... 33.5 7.0 sp|Q75AE1|ROK1_EREGS ATP-dependent RNA helicase ROK1 OS=Eremothec... 33.5 7.0 sp|A5DIP0|DHH1_PICGU ATP-dependent RNA helicase DHH1 OS=Meyerozym... 33.5 7.1 sp|Q0UU86|IF4A_PHANO ATP-dependent RNA helicase eIF4A OS=Phaeosph... 33.5 7.3 sp|A5DWJ1|FAL1_LODEL ATP-dependent RNA helicase FAL1 OS=Lodderomy... 33.5 7.3 sp|Q4HW67|DHH1_GIBZE ATP-dependent RNA helicase DHH1 OS=Gibberell... 33.5 7.3 sp|Q2U5A2|DHH1_ASPOR ATP-dependent RNA helicase dhh1 OS=Aspergill... 33.5 7.4 sp|Q2HCV7|ROK1_CHAGB ATP-dependent RNA helicase ROK1 OS=Chaetomiu... 33.5 7.5 sp|P35683|IF4A1_ORYSJ Eukaryotic initiation factor 4A-1 OS=Oryza ... 33.5 7.7 sp|O48534|DEXHD_ARATH DExH-box ATP-dependent RNA helicase DExH13 ... 33.9 7.8 sp|P0CQ96|SUB2_CRYNJ ATP-dependent RNA helicase SUB2 OS=Cryptococ... 33.5 8.0 sp|P0CQ97|SUB2_CRYNB ATP-dependent RNA helicase SUB2 OS=Cryptococ... 33.5 8.0 sp|A3GH91|DBP5_PICST ATP-dependent RNA helicase DBP5 OS=Scheffers... 33.5 8.0 sp|Q975X3|CDC61_SULTO ORC1-type DNA replication protein 1 OS=Sulf... 33.1 8.0 sp|A3GFI4|IF4A_PICST ATP-dependent RNA helicase eIF4A OS=Scheffer... 33.1 8.1 sp|Q1DQ20|IF4A_COCIM ATP-dependent RNA helicase eIF4A OS=Coccidio... 33.1 8.1 sp|F4ZCI3|NNHA_MYCS0 2-nitroimidazole nitrohydrolase OS=Mycobacte... 33.1 8.2 sp|Q0CXD0|IF4A_ASPTN ATP-dependent RNA helicase eIF4A OS=Aspergil... 33.1 8.2 sp|Q7XMK8|RH6_ORYSJ DEAD-box ATP-dependent RNA helicase 6 OS=Oryz... 33.5 8.3 sp|Q8SQM5|IF4A_ENCCU ATP-dependent RNA helicase eIF4A OS=Encephal... 33.1 8.4 sp|A1CJT5|IF4A_ASPCL ATP-dependent RNA helicase eIF4A OS=Aspergil... 33.1 8.4 sp|Q0UWC8|PRP28_PHANO Pre-mRNA-splicing ATP-dependent RNA helicas... 33.5 8.5 sp|Q1RKN3|TLH2_SCHPO ATP-dependent DNA helicase tlh2 OS=Schizosac... 33.5 8.7 sp|Q6H7S2|RH8_ORYSJ DEAD-box ATP-dependent RNA helicase 8 OS=Oryz... 33.1 8.7 sp|P0CT33|TLH1_SCHPO ATP-dependent DNA helicase tlh1 (Fragment) O... 33.5 8.7 sp|Q4IBS2|MAK5_GIBZE ATP-dependent RNA helicase MAK5 OS=Gibberell... 33.5 8.8 sp|Q91VR5|DDX1_MOUSE ATP-dependent RNA helicase DDX1 OS=Mus muscu... 33.5 8.9 sp|A5DUB2|MAK5_LODEL ATP-dependent RNA helicase MAK5 OS=Lodderomy... 33.5 8.9 sp|B8DJT9|UVRB_NITV9 UvrABC system protein B OS=Nitratidesulfovib... 33.5 9.0 sp|Q818H2|CSHB_BACCR DEAD-box ATP-dependent RNA helicase CshB OS=... 33.1 9.0 sp|Q03099|YMN3_YEAST Y' element ATP-dependent helicase YML133C OS... 33.5 9.2 sp|Q99208|YL066_YEAST Y' element ATP-dependent helicase YLL066C O... 33.5 9.2 sp|Q6BY27|DBP2_DEBHA ATP-dependent RNA helicase DBP2 OS=Debaryomy... 33.1 9.3 sp|A6RY31|DHH1_BOTFB ATP-dependent RNA helicase dhh1 OS=Botryotin... 33.1 9.3 sp|Q6NHI3|UVRB_CORDI UvrABC system protein B OS=Corynebacterium d... 33.1 9.6 sp|Q641Y8|DDX1_RAT ATP-dependent RNA helicase DDX1 OS=Rattus norv... 33.1 9.7 sp|Q07888|YL067_YEAST Y' element ATP-dependent helicase YLL067C O... 33.5 9.8 sp|O13559|YRF14_YEAST Y' element ATP-dependent helicase protein 1... 33.5 9.8 sp|P43538|YFG6_YEAST Y' element ATP-dependent helicase YFL066C OS... 33.1 9.8 sp|Q66HG7|DDX59_RAT Probable ATP-dependent RNA helicase DDX59 OS=... 33.1 10.0 sp|A7TT88|ROK1_VANPO ATP-dependent RNA helicase ROK1 OS=Vanderwal... 33.1 10.0 >sp|Q96C10|DHX58_HUMAN ATP-dependent RNA helicase DHX58 OS=Homo sapiens OX=9606 GN=DHX58 PE=1 SV=1 Length=678 Score = 1410 bits (3649), Expect = 0.0, Method: Compositional matrix adjust. Identities = 678/678 (100%), Positives = 678/678 (100%), Gaps = 0/678 (0%) Query 1 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV 60 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV Sbjct 1 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV 60 Query 61 TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV Sbjct 61 TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 Query 121 ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG 180 ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG Sbjct 121 ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG 180 Query 181 AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI 240 AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI Sbjct 181 AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI 240 Query 241 HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV 300 HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV Sbjct 241 HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV 300 Query 301 DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQR 360 DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQR Sbjct 301 DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQR 360 Query 361 QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ 420 QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ Sbjct 361 QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ 420 Query 421 QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYA 480 QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYA Sbjct 421 QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYA 480 Query 481 FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR 540 FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR Sbjct 481 FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR 540 Query 541 ENQRQQFPVEHVQLLCINCMVAVGHGSDLRKVEGTHHVNVNPNFSNYYNVSRDPVVINKV 600 ENQRQQFPVEHVQLLCINCMVAVGHGSDLRKVEGTHHVNVNPNFSNYYNVSRDPVVINKV Sbjct 541 ENQRQQFPVEHVQLLCINCMVAVGHGSDLRKVEGTHHVNVNPNFSNYYNVSRDPVVINKV 600 Query 601 FKDWKPGGVISCRNCGEVWGLQMIYKSVKLPVLKVRSMLLETPQGRIQAKKWSRVPFSVP 660 FKDWKPGGVISCRNCGEVWGLQMIYKSVKLPVLKVRSMLLETPQGRIQAKKWSRVPFSVP Sbjct 601 FKDWKPGGVISCRNCGEVWGLQMIYKSVKLPVLKVRSMLLETPQGRIQAKKWSRVPFSVP 660 Query 661 DFDFLQHCAENLSDLSLD 678 DFDFLQHCAENLSDLSLD Sbjct 661 DFDFLQHCAENLSDLSLD 678 >sp|Q99J87|DHX58_MOUSE ATP-dependent RNA helicase DHX58 OS=Mus musculus OX=10090 GN=Dhx58 PE=1 SV=2 Length=678 Score = 1103 bits (2853), Expect = 0.0, Method: Compositional matrix adjust. Identities = 533/678 (79%), Positives = 593/678 (87%), Gaps = 0/678 (0%) Query 1 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV 60 MELR YQWEVI+PALEGKNIIIWLPTGAGKTRAAA+VAKRHLETVD KVVVLVNRVHLV Sbjct 1 MELRPYQWEVILPALEGKNIIIWLPTGAGKTRAAAFVAKRHLETVDRGKVVVLVNRVHLV 60 Query 61 TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 +QH EEFRRMLD WTVTTLSGDMG RAGFG +AR HDLLICTAELLQ+AL S EE+EHV Sbjct 61 SQHAEEFRRMLDKHWTVTTLSGDMGSRAGFGLMARSHDLLICTAELLQLALNSSEEDEHV 120 Query 121 ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG 180 EL FSLIVVDECHHTHKDTVYN I+S+YLE KL++A+PLPQVLGLTASPGTGGA+KL G Sbjct 121 ELREFSLIVVDECHHTHKDTVYNTILSRYLEQKLKKAEPLPQVLGLTASPGTGGATKLQG 180 Query 181 AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI 240 AI+H+LQLCANLDT IMSP+NC QL H+ +PCKQY+LC RR+QDPFGDL+KKLM+QI Sbjct 181 AIDHILQLCANLDTCHIMSPKNCYSQLLMHNPKPCKQYDLCQRRAQDPFGDLIKKLMNQI 240 Query 241 HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV 300 H LEMP+L ++FGTQMYEQQVV+L + AA AGLQEQRVYALHLRRYNDAL IHDTVRA Sbjct 241 HQQLEMPDLKQQFGTQMYEQQVVQLCKDAAEAGLQEQRVYALHLRRYNDALFIHDTVRAR 300 Query 301 DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQR 360 DAL LQDFY RE TKTQ++ AE LL LFDD KN L LA GPENPKLEMLE+IL + Sbjct 301 DALDMLQDFYDRERTTKTQMVRAESWLLKLFDDHKNVLGQLAARGPENPKLEMLERILLK 360 Query 361 QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ 420 QF S RGIIFTRTRQ+A SLLLWL+QQ LQTV I+ Q+LIGAGN+SQSTHMTQ+DQ Sbjct 361 QFGSPGHTRGIIFTRTRQTASSLLLWLRQQPCLQTVGIKPQMLIGAGNTSQSTHMTQKDQ 420 Query 421 QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYA 480 QEVIQ+F+DG L+LLVATSVAEEGLDI CNVVVRYGLLTNEISMVQARGRARA QSVY+ Sbjct 421 QEVIQEFRDGILSLLVATSVAEEGLDIAQCNVVVRYGLLTNEISMVQARGRARAGQSVYS 480 Query 481 FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR 540 F+ATEGSRE+KREL NEALE LME+AVAAVQKMD E++AKIRDLQQA+L KRAA+AA R Sbjct 481 FLATEGSREMKRELTNEALEVLMEKAVAAVQKMDPDEFKAKIRDLQQASLVKRAARAAHR 540 Query 541 ENQRQQFPVEHVQLLCINCMVAVGHGSDLRKVEGTHHVNVNPNFSNYYNVSRDPVVINKV 600 E Q+ QF EHVQLLCINCMVAVG+GSDLRKVEGTHHVNVNPNFS YY S++PVVINKV Sbjct 541 EIQQGQFLPEHVQLLCINCMVAVGYGSDLRKVEGTHHVNVNPNFSVYYTTSQNPVVINKV 600 Query 601 FKDWKPGGVISCRNCGEVWGLQMIYKSVKLPVLKVRSMLLETPQGRIQAKKWSRVPFSVP 660 FKDW+PGG I C NCGEVWG QMIYKSV LPVLK+ S+LLETP+G+IQAKKWSRVPFS+P Sbjct 601 FKDWRPGGTIRCSNCGEVWGFQMIYKSVTLPVLKIGSILLETPRGKIQAKKWSRVPFSIP 660 Query 661 DFDFLQHCAENLSDLSLD 678 FD LQ C ++LS+LSLD Sbjct 661 VFDILQDCTQSLSELSLD 678 >sp|Q9BYX4|IFIH1_HUMAN Interferon-induced helicase C domain-containing protein 1 OS=Homo sapiens OX=9606 GN=IFIH1 PE=1 SV=3 Length=1025 Score = 528 bits (1361), Expect = 8e-175, Method: Compositional matrix adjust. Identities = 293/717 (41%), Positives = 428/717 (60%), Gaps = 52/717 (7%) Query 1 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA----KVVVLVNR 56 ++LR YQ EV PALEGKNIII LPTG+GKTR A Y+AK HL+ A KV+VLVN+ Sbjct 306 LQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNK 365 Query 57 VHLVTQ-HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE 115 V LV Q +EF+ L + V LSGD + F + + D++I TA++L+ +L + E Sbjct 366 VLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLE 425 Query 116 --EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQ---------PLPQVL 164 E+ V+L+ FSLI++DECHHT+K+ VYN IM YL KL+ + PLPQ+L Sbjct 426 NGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQIL 485 Query 165 GLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRR 224 GLTASPG GGA+K A H+L+LCANLD + I + + QL+ Q+PCK++ + Sbjct 486 GLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIADAT 545 Query 225 SQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHL 284 +DPF + L ++M +I + +M +S FGTQ YEQ +++ + AA G +++RV A HL Sbjct 546 REDPFKEKLLEIMTRIQTYCQMSPMS-DFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHL 604 Query 285 RRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQIL------------C---------- 322 R+YN+AL I+DT+R +DA L+ FY+ E K ++ C Sbjct 605 RKYNEALQINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDSDEGGDDEYCDGDEDEDDLK 664 Query 323 -------AERRLLALFDDRKNELAHLATHGP-ENPKLEMLEKILQRQFS-SSNSPRGIIF 373 +R L+ LF + L LA + EN KL L + Q++ + S RGIIF Sbjct 665 KPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARGIIF 724 Query 374 TRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN 433 T+TRQSA++L W+ + + V ++A LIGAG+SS+ MTQ +Q+EVI KF+ G +N Sbjct 725 TKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKIN 784 Query 434 LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFVATEGSRELKRE 493 LL+AT+VAEEGLDI CN+V+RYGL+TNEI+MVQARGRARAD+S Y VA GS ++ E Sbjct 785 LLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADESTYVLVAHSGSGVIEHE 844 Query 494 LINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQ 553 +N+ E +M +A+ VQ M EY KI +LQ ++ ++ + + + + + Sbjct 845 TVNDFREKMMYKAIHCVQNMKPEEYAHKILELQMQSIMEKKMKTKRNIAKHYKNNPSLIT 904 Query 554 LLCINCMVAVGHGSDLRKVEGTHHVNVNPNFSNYYNVSRDPVVINKVFKDWKPGGVISCR 613 LC NC V G D+ +E HHVN+ P F Y + R+ + K D++ G I C+ Sbjct 905 FLCKNCSVLACSGEDIHVIEKMHHVNMTPEFKELY-IVRENKALQKKCADYQINGEIICK 963 Query 614 NCGEVWGLQMIYKSVKLPVLKVRS--MLLETPQGRIQAKKWSRVPFSVPDFDFLQHC 668 CG+ WG M++K + LP LK+R+ ++ + + Q KKW +P + P+ D+ + C Sbjct 964 -CGQAWGTMMVHKGLDLPCLKIRNFVVVFKNNSTKKQYKKWVELPITFPNLDYSECC 1019 >sp|Q8R5F7|IFIH1_MOUSE Interferon-induced helicase C domain-containing protein 1 OS=Mus musculus OX=10090 GN=Ifih1 PE=1 SV=1 Length=1025 Score = 522 bits (1344), Expect = 3e-172, Method: Compositional matrix adjust. Identities = 293/717 (41%), Positives = 423/717 (59%), Gaps = 53/717 (7%) Query 1 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLE----TVDGAKVVVLVNR 56 ++LR YQ EV PAL+GKNIII LPTG+GKTR A Y+ K HL+ + KV+VLVN+ Sbjct 307 LQLRPYQMEVAQPALDGKNIIICLPTGSGKTRVAVYITKDHLDKKKQASESGKVIVLVNK 366 Query 57 VHLVTQ-HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE 115 V L Q +EF L + + LSGD + F + + +D++I TA++L+ +L + E Sbjct 367 VMLAEQLFRKEFNPYLKKWYRIIGLSGDTQLKISFPEVVKSYDVIISTAQILENSLLNLE 426 Query 116 --EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQR---------AQPLPQVL 164 +++ V+L+ FSLI++DECHHT+K+ VYN IM +YL+ KL+ A PLPQ+L Sbjct 427 SGDDDGVQLSDFSLIIIDECHHTNKEAVYNNIMRRYLKQKLRNNDLKKQNKPAIPLPQIL 486 Query 165 GLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRR 224 GLTASPG G A K A H+L +CANLD + I + + QL+ ++PCK++ + Sbjct 487 GLTASPGVGAAKKQSEAEKHILNICANLDAFTIKTVKENLGQLKHQIKEPCKKFVIADDT 546 Query 225 SQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHL 284 ++PF + L ++M I + + +S FGTQ YEQ +++ + AA G ++ RV A HL Sbjct 547 RENPFKEKLLEIMASIQTYCQKSPMS-DFGTQHYEQWAIQMEKKAAKDGNRKDRVCAEHL 605 Query 285 RRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQIL------------C---------- 322 R+YN+AL I+DT+R +DA + L+ FY E K +L C Sbjct 606 RKYNEALQINDTIRMIDAYSHLETFYTDEKEKKFAVLNDSDKSDDEASSCNDQLKGDVKK 665 Query 323 ------AERRLLALFDDRKNELAHLATHGP-ENPKLEMLEKILQRQFS-SSNSPRGIIFT 374 + L+ LF D K L LA + EN KL L + QF+ S S RGIIFT Sbjct 666 SLKLDETDEFLMNLFFDNKKMLKKLAENPKYENEKLIKLRNTILEQFTRSEESSRGIIFT 725 Query 375 RTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNL 434 +TRQS ++L W+ + V ++A LIGAG+SS+ MTQ +Q+EVI KF+ G +NL Sbjct 726 KTRQSTYALSQWIMENAKFAEVGVKAHHLIGAGHSSEVKPMTQTEQKEVISKFRTGEINL 785 Query 435 LVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFVATEGSRELKREL 494 L+AT+VAEEGLDI CN+V+RYGL+TNEI+MVQARGRARAD+S Y V + GS +RE+ Sbjct 786 LIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADESTYVLVTSSGSGVTEREI 845 Query 495 INEALETLMEQAVAAVQKMDQAEYQAKIRDLQ-QAALTKRAAQAAQRENQRQQFPVEHVQ 553 +N+ E +M +A+ VQ M EY KI +LQ Q+ L K+ Q P + Sbjct 846 VNDFREKMMYKAINRVQNMKPEEYAHKILELQVQSILEKKMKVKRSIAKQYNDNP-SLIT 904 Query 554 LLCINCMVAVGHGSDLRKVEGTHHVNVNPNFSNYYNVSRDPVVINKVFKDWKPGGVISCR 613 LLC NC + V G ++ +E HHVN+ P F Y + R+ + K F D++ G I C+ Sbjct 905 LLCKNCSMLVCSGENIHVIEKMHHVNMTPEFKGLY-IVRENKALQKKFADYQTNGEIICK 963 Query 614 NCGEVWGLQMIYKSVKLPVLKVRSMLLETPQG--RIQAKKWSRVPFSVPDFDFLQHC 668 CG+ WG M++K + LP LK+R+ ++ + Q KKW +P PD D+ ++C Sbjct 964 -CGQAWGTMMVHKGLDLPCLKIRNFVVNFKNNSPKKQYKKWVELPIRFPDLDYSEYC 1019 >sp|O95786|RIGI_HUMAN Antiviral innate immune response receptor RIG-I OS=Homo sapiens OX=9606 GN=RIGI PE=1 SV=2 Length=925 Score = 317 bits (813), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 224/696 (32%), Positives = 363/696 (52%), Gaps = 56/696 (8%) Query 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETV---DGAKVVVLVNRVHLV 60 R+YQ E+ +PA++GKN II PTG GKT + + + HL+ KVV N++ + Sbjct 244 RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVY 303 Query 61 TQHGEEFRRMLDGR-WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMAL---TSPEE 116 Q F + + + VT +SG + +D++I T ++L L T P Sbjct 304 EQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPS- 362 Query 117 EEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQ-PLPQVLGLTASPGTGGA 175 L++F+L++ DECH+T K YN+IM YL+ KL + PLPQV+GLTAS G G A Sbjct 363 -----LSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDA 417 Query 176 SKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKK 235 D A++++ +LCA+LD I + ++ +L++ +P K + R D F ++ + Sbjct 418 KNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQ 477 Query 236 LM-------DQIHDHLE-MPEL-SRKFGTQMYEQQVVKLSEAAALAGL----QEQRV--- 279 LM +I LE + ++ +R+FGTQ YEQ +V + +A + + +E R+ Sbjct 478 LMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKA 537 Query 280 ---YALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKN 336 Y HLR+YNDAL+I + R DAL L+DF+ +V E+ L F+++ Sbjct 538 LFLYTSHLRKYNDALIISEHARMKDALDYLKDFFS--NVRAAGFDEIEQDLTQRFEEKLQ 595 Query 337 ELAHLATH-GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQT 395 EL ++ ENPKLE L ILQ ++ + I+F +TR +L W++ L Sbjct 596 ELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSF 655 Query 396 VDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ-DGTLNLLVATSVAEEGLDIPHCNVVV 454 ++ +L G G ++Q+T MT Q+ ++ F+ G N+L+ATSVA+EG+DI CN+V+ Sbjct 656 --LKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVI 713 Query 455 RYGLLTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMD 514 Y + N I M+Q RGR RA S F+ T + +++E IN E +M ++ +Q D Sbjct 714 LYEYVGNVIKMIQTRGRGRARGS-KCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWD 772 Query 515 QAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPV---EHVQLLCINCMVAVGHGSDLRK 571 +A ++ KI +Q + R++Q + PV E+ +LLC C + +D+R Sbjct 773 EAVFREKILHIQ-------THEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRV 825 Query 572 VEGTHHVNVNPNFSNYYNVSRDPVVINKVFKDWKPGGVISC--RNCGEVWGLQMIYKSVK 629 +E H+ + F + VSR P K F ++ I C +NC WG+ + YK+ + Sbjct 826 IEECHYTVLGDAFKECF-VSR-PHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFE 883 Query 630 LPVLKVRSMLLETPQGRIQA--KKWSRVPFSVPDFD 663 +PV+K+ S ++E +Q KW F FD Sbjct 884 IPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFD 919 >sp|Q6Q899|RIGI_MOUSE Antiviral innate immune response receptor RIG-I OS=Mus musculus OX=10090 GN=Rigi PE=1 SV=2 Length=926 Score = 308 bits (790), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 214/696 (31%), Positives = 362/696 (52%), Gaps = 56/696 (8%) Query 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETV---DGAKVVVLVNRVHLV 60 R+YQ E+ +PA +GKN II PTG GKT + + + HL+ KVV N++ + Sbjct 245 RNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVY 304 Query 61 TQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTS---PEE 116 Q F R + + + ++SG H+ +D++I T ++L L + P Sbjct 305 EQQATVFSRYFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPS- 363 Query 117 EEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQ-PLPQVLGLTASPGTGGA 175 L+VF+L++ DECH+T K+ YN IM +YL+ KL ++ PLPQV+GLTAS G G A Sbjct 364 -----LSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRDPLPQVVGLTASVGVGDA 418 Query 176 SKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKK 235 + A+ H+ +LCA LD I + ++ +L++ +P K R+ + F ++ + Sbjct 419 KTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQ 478 Query 236 LMDQIHD-----HLEMPEL----SRKFGTQMYEQQVVKLSEAAALAGL----QEQRV--- 279 LM + E+ +L +R+FGTQ YEQ +V + +A ++ + +E RV Sbjct 479 LMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKA 538 Query 280 ---YALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKN 336 Y HLR+YNDAL+I + + DAL L+ F+H V + ER L F+++ Sbjct 539 LFLYTSHLRKYNDALIISEDAQMTDALNYLKAFFH--DVREAAFDETERELTRRFEEKLE 596 Query 337 ELAHLATH-GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQT 395 EL ++ ENPKL L +LQ ++ + I+F +TR +L W+++ L Sbjct 597 ELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSF 656 Query 396 VDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ-DGTLNLLVATSVAEEGLDIPHCNVVV 454 ++ +L G G ++++T MT Q+ V++ F+ G N+L+ATSVA+EG+DI CN+V+ Sbjct 657 --LKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVI 714 Query 455 RYGLLTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMD 514 Y + N I M+Q RGR RA S F+ T + +++E N E +M +++ +Q D Sbjct 715 LYEYVGNVIKMIQTRGRGRARDS-KCFLLTSSADVIEKEKANMIKEKIMNESILRLQTWD 773 Query 515 QAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPV---EHVQLLCINCMVAVGHGSDLRK 571 + ++ + +Q + R++Q + PV E+ +LLC C + +D+R Sbjct 774 EMKFGKTVHRIQ-------VNEKLLRDSQHKPQPVPDKENKKLLCGKCKNFACYTADIRV 826 Query 572 VEGTHHVNVNPNFSNYYNVSRDPVVINKVFKDWKPGGVISC--RNCGEVWGLQMIYKSVK 629 VE +H+ + F + P K++ +++ I C +NC WG+ + YK+ + Sbjct 827 VETSHYTVLGDAFKERFVCKPHPK--PKIYDNFEKKAKIFCAKQNCSHDWGIFVRYKTFE 884 Query 630 LPVLKVRSMLLETPQGRIQAK--KWSRVPFSVPDFD 663 +PV+K+ S ++E +Q + KW F FD Sbjct 885 IPVIKIESFVVEDIVSGVQNRHSKWKDFHFERIQFD 920 >sp|Q9GLV6|RIGI_PIG Antiviral innate immune response receptor RIG-I OS=Sus scrofa OX=9823 GN=RIGI PE=2 SV=1 Length=940 Score = 280 bits (716), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 214/698 (31%), Positives = 339/698 (49%), Gaps = 55/698 (8%) Query 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVD---GAKVVVLVNRVHLV 60 R YQ E+ +PA GKN II PTG GKT + + + HL+ KVV ++ + Sbjct 242 RKYQLELALPAQNGKNTIICAPTGCGKTFVSLLICEHHLKKFPRGRKGKVVFFAIQLPVY 301 Query 61 TQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 Q F + + + V +SG + D++I T ++L LT+ Sbjct 302 EQQKSVFSKHFERLGYKVAGISGATSDTVCVEQIVENSDIIILTPQILVNCLTNGT---I 358 Query 120 VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQ-RAQPLPQVLGLTASPGTGGASKL 178 L+VF+L++ DECH+T K YNVIM YL+ KL + LPQV+GLTAS G G A Sbjct 359 PSLSVFTLMIFDECHNTSKQHPYNVIMFSYLDRKLGGSSDSLPQVIGLTASVGVGDAKNK 418 Query 179 DGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMD 238 A ++ +LCA+LDT I + ++ +L+E +P K + R+ D F ++ +LM Sbjct 419 AEATEYICKLCASLDTSVIATVRDNLEELEEVVYKPQKFFRKVELRTTDRFKCIISQLMM 478 Query 239 QIHDHLE--MPEL------------SRKFGTQMYEQQVVKLSEAAALAGL----QEQRV- 279 +I + EL + FGTQ YEQ +VK+ + A+ + +E R+ Sbjct 479 EIESLAKSIFEELGTITLGGLFQIQNSNFGTQKYEQWIVKVQKECAVFQMPDKDKESRIC 538 Query 280 -----YALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDR 334 Y HLR YNDAL+I++ R DAL L+DF+ ++ E+ L F+++ Sbjct 539 KALFSYMSHLRIYNDALIINEHARMKDALDYLKDFFR--NIRAAGFDEIEQDLTQRFEEK 596 Query 335 KNELAHLATH-GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGL 393 EL ++ ENPKL L ILQ ++ + R I+F +TR +L W+++ L Sbjct 597 LQELESISIDPSNENPKLRDLCFILQEEYHLNPETRTILFVKTRALVDALKKWIKENPKL 656 Query 394 QTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ-DGTLNLLVATSVAEEGLDIPHCNV 452 ++ +L G G ++Q+ MT Q+ V+ F+ D +L+ TSVA+EG+DI CN+ Sbjct 657 SF--LKPSILTGRGKTNQNIGMTLPAQKCVLDTFRTDKDNKILITTSVADEGIDIAQCNL 714 Query 453 VVRYGLLTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQK 512 V+ Y + N I M+Q RGR RA S F+ T + + +E +N E +M A+ +Q Sbjct 715 VILYEYVGNVIKMIQTRGRGRARGS-KCFLLTANADLIDKEKMNMYKEEMMNGAILILQT 773 Query 513 MDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQLLCINCMVAVG---HGSDL 569 D+A ++ KI +Q + R+NQ + PV + + C + +D+ Sbjct 774 WDEAVFKEKIHQIQ-------IREKIIRDNQGKPEPVPDKKTKKLLCKKCKAFACYTADI 826 Query 570 RKVEGTHHVNVNPNFSNYYNVSRDPVVINKVFKDWKPGGVISCR--NCGEVWGLQMIYKS 627 R VE H V F + P K F + + I C +C WG+ + YK+ Sbjct 827 RMVEKCHFTVVGDAFRERFVSKLHPK--PKSFGNIEKRAKIYCARPDCSHDWGIYVRYKA 884 Query 628 VKLPVLKVRSMLLETPQGRIQA--KKWSRVPFSVPDFD 663 ++P +K+ S ++E +Q KW F FD Sbjct 885 FEMPFIKIESFVVEDIATGVQTVHAKWKDFNFEKLSFD 922 >sp|Q7S8J7|DCL1_NEUCR Dicer-like protein 1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=dcl-1 PE=2 SV=1 Length=1584 Score = 135 bits (340), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 146/518 (28%), Positives = 238/518 (46%), Gaps = 80/518 (15%) Query 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAA----YVAKRHLETVDGA----KVVVLVN 55 R YQ E+ A + +N I L TG+GKT AA +V LE + LV+ Sbjct 123 REYQVELFERAKQ-QNTIAVLDTGSGKTLIAAMLLRWVITGELEDREKGLPRRIAFFLVD 181 Query 56 RVHLVTQHGEEFRRMLDGRWTVTTLSGDM----GPRAGFGHLARCHDLLICTAELLQMAL 111 +V LV Q + LD + + L G+M +A + +++++CTAE+L AL Sbjct 182 KVALVFQQHSFLTKNLD--FPMEKLCGEMVEGVESKAFWKEALEQNEVVVCTAEILSTAL 239 Query 112 TSPEEEEHVELTVFSLIVVDECHHTHKDTVY-NVIMSQYLELKLQRAQPLPQVLGLTASP 170 + + +L++ DE HHT KD Y +I + Y++ +L+R P++LGLTASP Sbjct 240 ----HHSWIRMDQINLLIFDEAHHTKKDHPYARIIKNFYIDEQLERR---PRILGLTASP 292 Query 171 GTG------GASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQ-QPCKQYNLCHR 223 A++L+ ++ + A+ P +H+ +P + + + Sbjct 293 VDAKVDPRRAAAELEALLHSQIATAAD-------------PAALQHTICKPKTELVVEYV 339 Query 224 RSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALH 283 R + +L K + ++ E+ + F T S A+ L R + L Sbjct 340 RGRPDSETVLNKQLRKLVGGQELFKKPLNFTT----------SAASKLGTWCADRYWQLF 389 Query 284 LRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLAT 343 ++ + L T R + +AAL + + HV + + +EL + T Sbjct 390 FKQEDIVKLESRTERDLMKVAALDEITEK-HVKQVR--------------EAHELVNAHT 434 Query 344 HGPE-------NPKLEMLEKILQRQFSSS-NSPRGIIFTRTRQSAHSLLLWLQQQQGLQT 395 P + K+ ML +IL+ QF + R IIF R R +A L LQQ + Sbjct 435 FSPAALDPTMLSSKVIMLVRILRDQFERGVGAQRCIIFVRQRNTAMLLADLLQQPEIKSH 494 Query 396 V-DIRAQLLIGAGNSSQS---THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN 451 + I A++L+G G + S + + Q +I+KF+ G +N L ATSVAEEGLDIP CN Sbjct 495 IPSIAAEVLVGGGTTGSSYVNAKINFQQQNRIIRKFKLGEINCLFATSVAEEGLDIPDCN 554 Query 452 VVVRYGLLTNEISMVQARGRARADQSVYAFVATEGSRE 489 +V+R+ L I +Q+RGRAR S Y + +G+ E Sbjct 555 IVIRFDLYDTLIQCIQSRGRARRPDSRYIQMIEKGNYE 592 >sp|A2RAF3|DCL1_ASPNC Dicer-like protein 1 OS=Aspergillus niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) OX=425011 GN=dcl1 PE=3 SV=2 Length=1525 Score = 130 bits (327), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 144/518 (28%), Positives = 235/518 (45%), Gaps = 69/518 (13%) Query 1 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLET-----VDGAK---VVV 52 ++ R YQ E+ A + +N I L TG+GKT A + K LE ++G Sbjct 115 LDPREYQLELFERA-KVQNTIAVLDTGSGKTLIAVLLLKHTLEKELNDRMEGKPHRIAFF 173 Query 53 LVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMG----PRAGFGHLARCHDLLICTAELLQ 108 LV+ V L Q R LD +V G MG ++ + + + +++CTAE+L Sbjct 174 LVDSVTLAYQQAAVLRNNLDQ--SVGHFFGAMGTDLWSKSVWDQHFQKNMVIVCTAEILN 231 Query 109 MALTSPEEEEHVELTVFSLIVVDECHHTHKDTVY-NVIMSQYLELKLQRAQPLPQVLGLT 167 L + +++++ ++++ DE HHT KD Y +I YLE + P++ G+T Sbjct 232 QCLLN----SYIKMSQINILIFDEAHHTKKDHPYARIIRDSYLEEVYSKR---PRIFGMT 284 Query 168 ASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQD 227 ASP +D A L + + T MS L++ +++P ++ ++ Q Sbjct 285 ASPIDTKGDIVDEATRLEKLLDSRIATTSNMS------LLRQVARRPVERVWSFNKLEQ- 337 Query 228 PFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAA--LAGLQEQRVYALHLR 285 PF L K HLE +FG + + + + A+ L R +A L Sbjct 338 PFATSLYK-------HLE-----DRFGDMACLEGIFRFAWQASSELGRWCSDRAWARAL- 384 Query 286 RYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAE---RRLLALFDD----RKNEL 338 A D L L+ + ++T E + +L + + + Sbjct 385 -------------ADDVLPKLEGSVRKTANSETSSNVPESAYKEILRITEASEIVKSYAF 431 Query 339 AHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI 398 + T G +PK+++L + L R F + I+FT+ R +A L+ + Q L + Sbjct 432 SSPETFGQLSPKVQVLREELARYFGRQTETKCIVFTQKRYTA---LILAELFQTLNIPFL 488 Query 399 RAQLLIGAGNSS-QSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG 457 R +LIG + ++T R Q + KF+ G +N L ATSVAEEGLDIP CN+VVR+ Sbjct 489 RPGVLIGVRSGDLAGMNITFRQQFISLVKFRTGEINCLFATSVAEEGLDIPDCNLVVRFD 548 Query 458 LLTNEISMVQARGRARADQSVYAFVATEGSRELKRELI 495 L I VQ+RGRAR S YA + G+ E ++ L+ Sbjct 549 LYQTLIQYVQSRGRARHFNSTYASMVERGNLEHEQRLL 586 >sp|A1DE13|DCL1_NEOFI Dicer-like protein 1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dcl1 PE=3 SV=1 Length=1538 Score = 129 bits (323), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 140/512 (27%), Positives = 222/512 (43%), Gaps = 69/512 (13%) Query 1 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAK----RHLETVDGAK----VVV 52 ++ R YQ E+ A + +N I L TG+GKT A + + L+ K Sbjct 125 LDPREYQIELFERA-KTQNTIAVLDTGSGKTLIAVLLLRHTILNELDNRANGKPHRVSFF 183 Query 53 LVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGP-----RAGFGHLARCHDLLICTAELL 107 LV+ V L Q R +D V G MG R HL R + +++CTAE+L Sbjct 184 LVDSVTLAYQQAAVLRNNIDQ--NVAHFFGAMGTDLWDKRTWDEHLQR-NMVIVCTAEIL 240 Query 108 QMALTSPEEEEHVELTVFSLIVVDECHHTHKDTVY-NVIMSQYLELKLQRAQP--LPQVL 164 L + +V++ +L++ DE HH KD Y +I Y +AQP P+V Sbjct 241 NQCLLN----SYVKMDQINLLIFDEAHHAKKDHPYARIIRDSYF-----KAQPSQRPRVF 291 Query 165 GLTASPG------TGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQY 218 G+TASP T A++L+ ++ + + + L+E +P ++ Sbjct 292 GMTASPIDTKGDITEAATRLETLLDSRIATTSKITL------------LREVVSRPIEKV 339 Query 219 NLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQR 278 + R + PF L KLMD + ++++ E +F + S+ A L + Sbjct 340 -WAYNRLESPFATELYKLMDTRYGNIKVLEGVYRFAWHASSELGKWCSDRAWWHALADDV 398 Query 279 VYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNEL 338 + L N + L+ + A +D ++T + Sbjct 399 LPKLE---GNISKLVESNTLNAEHGAVFKDIIRIREASETV--------------KNYSF 441 Query 339 AHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI 398 A G +PK+++L L + FS + + I+FT+ R +A L + L + Sbjct 442 ADPELPGELSPKVQLLRMELSKHFSDTTGTKCIVFTQKRYTAKILN---ELFTVLNIPHL 498 Query 399 RAQLLIGA-GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG 457 R +LIG ++T R Q + KF+ G +N L ATSVAEEGLDIP CN+VVR+ Sbjct 499 RPGVLIGVRPGDIGGMNVTFRQQFLALVKFRTGEINCLFATSVAEEGLDIPDCNLVVRFD 558 Query 458 LLTNEISMVQARGRARADQSVYAFVATEGSRE 489 L I VQ+RGRAR S YA + + + E Sbjct 559 LYRTLIQYVQSRGRARHCTSTYAIMVEKDNAE 590 >sp|Q4WVE3|DCL1_ASPFU Dicer-like protein 1 OS=Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293) OX=330879 GN=dcl1 PE=3 SV=3 Length=1537 Score = 125 bits (315), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 139/512 (27%), Positives = 220/512 (43%), Gaps = 69/512 (13%) Query 1 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHL--ETVDGAK------VVV 52 ++ R YQ E+ A + +N I L TG+GKT A + + + E D A Sbjct 124 LDPREYQIELFERA-KTQNTIAVLDTGSGKTLIAVLLLRHTILNELDDRANGKTHRVSFF 182 Query 53 LVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGP-----RAGFGHLARCHDLLICTAELL 107 LV+ V L Q R +D V G MG R HL R + +++CTAE+L Sbjct 183 LVDSVTLAYQQAAVLRNNIDQ--NVAHFFGAMGTDLWDKRTWDKHLQR-NMVIVCTAEIL 239 Query 108 QMALTSPEEEEHVELTVFSLIVVDECHHTHKDTVY-NVIMSQYLELKLQRAQP--LPQVL 164 L + +V + +L++ DE HH KD Y +I Y +AQP P+V Sbjct 240 NQCLLN----SYVRMDQINLLIFDEAHHAKKDHPYARIIRDSYF-----KAQPSQRPRVF 290 Query 165 GLTASPG------TGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQY 218 G+TASP T A++L+ ++ + + + L+E +P ++ Sbjct 291 GMTASPIDTKGDITEAATRLETFLDSRIATTSKITL------------LREVVSRPIEKV 338 Query 219 NLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQR 278 + R + PF L KLMD + ++++ E +F + S+ A L + Sbjct 339 -WAYNRLEPPFATELYKLMDTRYGNIKVLEGVYRFAWNASSELGKWCSDRAWWHALADDV 397 Query 279 VYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNEL 338 + L N LI + A +D ++T + Sbjct 398 LPKLE---GNINKLIESNTMKAEHGAVFKDIIRIREASETV--------------KNYFF 440 Query 339 AHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI 398 G +PK++ L L + F+ + + I+FT+ R +A L + L ++ Sbjct 441 TDPELPGELSPKVQRLRMELSKHFNDTTGTKCIVFTQKRYTAKILN---ELFTVLNIPNL 497 Query 399 RAQLLIGA-GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG 457 R +LIG ++T R Q + KF+ G +N L ATSVAEEGLDIP CN+V+R+ Sbjct 498 RPGVLIGVRPGDIGGMNITFRQQFLALVKFRTGEINCLFATSVAEEGLDIPDCNLVIRFD 557 Query 458 LLTNEISMVQARGRARADQSVYAFVATEGSRE 489 L I VQ+RGRAR S YA + + + E Sbjct 558 LYRTLIQYVQSRGRARHCTSTYAIMVEKDNAE 589 >sp|Q2U6C4|DCL1_ASPOR Dicer-like protein 1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=dcl1 PE=3 SV=2 Length=1523 Score = 124 bits (310), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 141/504 (28%), Positives = 220/504 (44%), Gaps = 72/504 (14%) Query 1 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHL--ETVDGAK------VVV 52 ++ R YQ E+ A + +N I L TG+GKT A + K + E +D A Sbjct 114 LDPREYQVELFERA-KSQNTIAVLDTGSGKTLIAVLLLKHIIQNELIDRANGKPPRISFF 172 Query 53 LVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMG----PRAGFGHLARCHDLLICTAELLQ 108 LV+ V L Q R LD V G MG + + H + +++CTAE+L Sbjct 173 LVDSVTLAFQQAAVLRNNLDQ--NVAQFFGAMGTDLWSKQTWDHQFENNMVIVCTAEILN 230 Query 109 MALTSPEEEEHVELTVFSLIVVDECHHTHKDTVY-NVIMSQYLELKLQRAQPL--PQVLG 165 L + ++ + +L++ DE HHT KD Y +I YL +A P P++ G Sbjct 231 QCLLN----SYIRMDQINLLIFDEAHHTKKDHPYARIIRESYL-----KADPTKRPRIFG 281 Query 166 LTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRS 225 +TASP ++ A + L + + T S N L+E ++P ++ + + + Sbjct 282 MTASPIDTKGDIIESATKLEVLLDSKIAT---TSKPNL---LREVVRRPIEE-SWEYDKL 334 Query 226 QDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVK--LSEAAALAGLQEQRVYALH 283 PF L ++ L +FG Q V + L ++ L R +A Sbjct 335 DPPFATKLYQI------------LQARFGDISSLQPVFRFTLQASSELGPCCADRAWAYA 382 Query 284 LRRYNDALLIHDTVRAVDALAALQDFYHR--EHVTKTQILCAER---RLLALFDDRKN-E 337 L A D L L+ + + ++ CA + R+ D KN Sbjct 383 L--------------ADDVLPKLEGNVRKLAQSISSPIPQCALKEISRIQEASDIVKNHS 428 Query 338 LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD 397 G +PK+++L + L + F + I+FT+ R +A L L+ Sbjct 429 FNSPNVPGELSPKVQLLRQKLIKYFEHPTKTKCIVFTQKRYTAKMLFDLFST---LEIPY 485 Query 398 IRAQLLIGAGNSS-QSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY 456 +R +LIG + +++ R Q + KF+ G +N L ATSVAEEGLDIP CN+VVR+ Sbjct 486 LRPGVLIGVRSGDIVGMNVSFRQQFLALVKFRSGEINCLFATSVAEEGLDIPDCNLVVRF 545 Query 457 GLLTNEISMVQARGRARADQSVYA 480 L I VQ+RGRAR S YA Sbjct 546 DLYNTLIQYVQSRGRARHSSSTYA 569 >sp|A1CBC9|DCL1_ASPCL Dicer-like protein 1 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=dcl1 PE=3 SV=2 Length=1534 Score = 124 bits (310), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 144/507 (28%), Positives = 221/507 (44%), Gaps = 77/507 (15%) Query 1 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHL--ETVDGAK------VVV 52 ++ R YQ E+ A + +N I L TG+GKT A + + L E D A Sbjct 121 LDPREYQIELFERA-KAQNTIAVLDTGSGKTLIAVLLLRHVLQNELNDRANGKPHRVSFF 179 Query 53 LVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGP----RAGFGHLARCHDLLICTAELLQ 108 LV+ V L Q R +D V G MG R + + + +++CTAE+L Sbjct 180 LVDSVTLAYQQAAVLRNNIDQ--NVAHFFGAMGTDLWDRQVWEEHLQQNMVIVCTAEILN 237 Query 109 MALTSPEEEEHVELTVFSLIVVDECHHTHKDTVY-NVIMSQYLELKLQRAQP--LPQVLG 165 L + HV + +L++ DE HHT KD Y +I Y +A P P++ G Sbjct 238 QCLLN----SHVRMNQINLLIFDEAHHTKKDHPYARIIRDSYF-----KASPPQRPRIFG 288 Query 166 LTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRS 225 +TASP + A L + + T ++ L++ +P ++ + R Sbjct 289 MTASPIDTKGDIIAAATRLETLLDSRIATTSKIT------LLRQVVSRPIEKV-WAYDRL 341 Query 226 QDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR 285 + PF L KLM+ +++ E +F + S+ A L YAL Sbjct 342 ESPFKTNLHKLMENRFGNVKALEGVFRFAWYASSELGRWCSDRAWL--------YAL--- 390 Query 286 RYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRL----LALFDDRKNELAHL 341 A D L L+ H + ++ ER + + L + N + Sbjct 391 -------------ADDVLPKLEG--HVNKLAESTAAATERDMAFKEITLIKEASNIVKAH 435 Query 342 ATHGPE-----NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSL--LLWLQQQQGLQ 394 + PE +PK+ +L+ L + FS + + IIFT+ R +A +L L + L Sbjct 436 TFNDPEFPGELSPKVRLLQTELSKHFSHAPETKCIIFTQKRYTAKTLHELFTI-----LS 490 Query 395 TVDIRAQLLIGAGNSS-QSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV 453 +R +LIG + ++T R Q + KF+ G +N L ATSVAEEGLDIP CN+V Sbjct 491 IPHLRPGVLIGVRSGDIGGMNITFRQQFLALVKFRKGEINCLFATSVAEEGLDIPDCNLV 550 Query 454 VRYGLLTNEISMVQARGRARADQSVYA 480 VR+ L I VQ+RGRAR S YA Sbjct 551 VRFDLYHTLIQYVQSRGRARHYHSTYA 577 >sp|Q0CW42|DCL1_ASPTN Dicer-like protein 1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=dcl1 PE=3 SV=2 Length=1519 Score = 117 bits (294), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 142/505 (28%), Positives = 223/505 (44%), Gaps = 79/505 (16%) Query 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLET--VDGAK------VVVLVN 55 R YQ E+ A + +N I L TG+GKT A + K ++T +D A LV+ Sbjct 110 REYQIELFERA-KVQNTIAVLDTGSGKTLIAVLLLKHVIQTELIDRANGNPPRISFFLVD 168 Query 56 RVHLVTQHGEEFRRMLDGRWTVTTLSGDMG----PRAGFGHLARCHDLLICTAELLQMAL 111 V LV Q R LD V G MG + + + +++CTAE+L L Sbjct 169 SVTLVYQQASVLRNNLDQ--NVAHFFGAMGVDLWNKQTWAEHFEKNMVIVCTAEILNQCL 226 Query 112 TSPEEEEHVELTVFSLIVVDECHHTHKDTVY-NVIMSQYLELKLQRAQPLPQVLGLTASP 170 + ++ + +L+V DE HHT KD Y +I YL + P++ G+TASP Sbjct 227 LN----AYITMQQINLLVFDEAHHTKKDHPYARIIRDSYLRVP---PSSRPRIFGMTASP 279 Query 171 GTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFG 230 L+ A N L A LD+ + + L++ +P ++ + + + Q F Sbjct 280 VDTKGDVLEAARN----LEALLDSKIATTSKLTI--LRQVVNRPNEEVWI-YDKLQPTFT 332 Query 231 DLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAA--LAGLQEQRVYALHLRRYN 288 L KLM+ +FG + + + + + A L RV+ L + Sbjct 333 SDLYKLMES------------RFGDISHLEPMFRFARHATSELGTWCADRVWVSALA--D 378 Query 289 DAL-LIHDTV---RAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATH 344 D L + ++ R L L HR+ +T+ + +EL + +H Sbjct 379 DVLPKVEGSIGGKRQSTGLGQLPKDVHRD-ITRIK--------------EASEL--VESH 421 Query 345 GPENP--------KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTV 396 P +P K+ +L K + + F + + I+FT R +A L L Sbjct 422 PPNDPGAPEALSSKVRVLWKEISQCFGQETNTKCIVFTEKRYTAKVLFDLFTV---LNVP 478 Query 397 DIRAQLLIGAGNSSQ-STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVR 455 +R +LIG +S + ++T R Q + +F+ G +N L AT+VAEEGLDIP CN+VVR Sbjct 479 GLRPGVLIGVRSSDRIGMNVTFRQQILTMVRFRTGEINCLFATAVAEEGLDIPDCNLVVR 538 Query 456 YGLLTNEISMVQARGRARADQSVYA 480 + L I VQ+RGRAR S YA Sbjct 539 FDLYKTLIQYVQSRGRARHADSTYA 563 >sp|Q0UI93|DCL1_PHANO Dicer-like protein 1 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) OX=321614 GN=DCL1 PE=3 SV=2 Length=1522 Score = 116 bits (291), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 139/527 (26%), Positives = 220/527 (42%), Gaps = 86/527 (16%) Query 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETV--DGAK------VVVLVN 55 R YQ E+ + A + +N I L TG GKT A + + LE + AK LV+ Sbjct 70 RDYQMELFLRA-KMQNTIAVLDTGTGKTHIATLLLRHVLEEELENRAKGCAHKMAFFLVD 128 Query 56 RVHLVTQHGEEFRRMLDGRWTVTTLSGDMGP----RAGFGHLARCHDLLICTAELLQMAL 111 V+LV Q R LD V +SG MG + + L + +++CTA++L + Sbjct 129 SVNLVFQQANVLRCGLDQ--GVEGISGAMGQSLFQKQTWDKLFAVNMVIVCTAQVLVDCM 186 Query 112 TSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASP- 170 + ++ +L++ DE HH + Y +M Y +L ++ P++ +TASP Sbjct 187 M----HSFMSISRMNLLIFDEAHHAKSNHPYARVMKDYYAHELDTSK-RPRIFAMTASPV 241 Query 171 GTGGASKLDGAINHVLQLCANLDTW----------------CIMSPQN---CCPQLQEHS 211 G S HV + L+T I P+ +L+ Sbjct 242 DVKGQSA-----EHVREAARELETLLHSRIATTSDSALARNSITRPEEEVAVYTRLRNEF 296 Query 212 QQPCKQYNLCHRRSQDPFGDL--LKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAA 269 + P H++ + +GD+ +KL I L EL R + + MY ++ Sbjct 297 ETPL------HQKVKAKYGDVAPFRKLF--ITAKLHASELGR-WASDMYWSFAFADEQSR 347 Query 270 ALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLA 329 L ++E+ Y R ++ A L R +A A +Q + Q L + Sbjct 348 KLQ-IREELKYNRSKRDWSAAELDAQMARLKEATAFVQQYEIGAPTLSEQDLSS------ 400 Query 330 LFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQ 389 K+ L+ L + + R I+F R +A L L Sbjct 401 --------------------KVMKLQYWLNLYYERTTLARCIVFVEKRHTAQLLKLIFDH 440 Query 390 QQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPH 449 G ++ +L+G N + +++ R Q +QKF+ G LN L ATSVAEEGLDIP Sbjct 441 IGG---PNLHCDVLVGINNRAGEENVSLRSQILTLQKFRRGELNCLFATSVAEEGLDIPQ 497 Query 450 CNVVVRYGLLTNEISMVQARGRARADQSVYAFVATEGSRELKRELIN 496 CN+VVR+ L I VQ+RGRAR S Y + ++E L+N Sbjct 498 CNLVVRFDLYRTMIGYVQSRGRARHRNSKYLHMLEAENKEHTERLMN 544 >sp|Q58900|Y1505_METJA Putative ATP-dependent RNA helicase MJ1505 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ1505 PE=3 SV=2 Length=778 Score = 108 bits (271), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 127/514 (25%), Positives = 221/514 (43%), Gaps = 95/514 (18%) Query 1 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV 60 +E R YQ + AL+ K + + L TG GKT A V L DG KV++L LV Sbjct 13 LEARLYQQIIAANALKKKTLCV-LSTGLGKTAIAILVIAGILTKKDG-KVLILAPSRPLV 70 Query 61 TQHGEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 QH +++L+ + L+G + P+ L + + I T ++++ + + Sbjct 71 EQHYNRLKQVLNIDEDKIIALTGKIQPKKR-AELYKKGKIFIATPQVIENDIIAG----R 125 Query 120 VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLD 179 + + F L++ DE HHT D Y + ++ + +LGLTASPG+ Sbjct 126 INVDEFILLIADEAHHTTGDHAYAFVAKKF--------KDKCHILGLTASPGSD------ 171 Query 180 GAINHVLQLCANLDTWCIM----SPQNCCPQLQEHSQQPCK-----QYNLCHRRSQDPFG 230 I+ V+++C NL + ++ P + + P + ++ + + Sbjct 172 --IDKVMEICENLGIEHVEVRTEDDEDVKPYIAKVKLIPIRIDLPNEFKRALKLINEALK 229 Query 231 DLLKKLMD-----QIHD--HLEMPELSRKFGTQMYEQQV-----------VKLSEAAALA 272 + LK L D I D E+ EL+ K + Y+++V +KL A L Sbjct 230 ERLKILKDAGVINSIADVTKTELIELNNKLFS--YDEEVKYELIKVCSEALKLMHAKELL 287 Query 273 GLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFD 332 Q + V+ ++ + + R A + + D RE V Sbjct 288 ESQGKSVFLNYINKLS-------MQRTKSAKSIVNDEKVREAVN---------------- 324 Query 333 DRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQG 392 L E+PKL + +++ + R IIF + R + ++ L Q Sbjct 325 -------LLMKSDVEHPKLGKVVDMVKNILEKNKDERIIIFAQYRDTVEKIVNLLTQN-- 375 Query 393 LQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ-DGTLNLLVATSVAEEGLDIPHCN 451 I+A IG N + M+Q++Q E I++F+ +G++ LV+TSV+EEG+DIP N Sbjct 376 ----GIKAIRFIGQANK-EGKGMSQKEQIEAIERFKKEGSV--LVSTSVSEEGIDIPSVN 428 Query 452 VVVRYGLLTNEISMVQARGRARADQ--SVYAFVA 483 ++ Y + +EI +Q RGRA + VY +A Sbjct 429 YIIFYEPVPSEIRFIQRRGRAMRGEGGKVYVLIA 462 >sp|Q2VF18|DCL2_CRYPA Dicer-like protein 2 OS=Cryphonectria parasitica OX=5116 GN=DCL-2 PE=3 SV=1 Length=1451 Score = 109 bits (272), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 141/546 (26%), Positives = 241/546 (44%), Gaps = 87/546 (16%) Query 1 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVV-VLVNRVHL 59 M+ R+YQ E++ +L+ +NII + TG+GKT A K LE + +VV L V L Sbjct 61 MDARAYQLEMLEASLK-ENIICAMDTGSGKTHVAILRIKAELEEMPEGQVVWFLTPTVSL 119 Query 60 VTQHGEEFR--------RMLDG-----RWTVTTLSGDMGPRAGFGHLARCHDLLICTAEL 106 Q + +++ G W+ TT G + ++I T ++ Sbjct 120 CAQQYAVVKAQIPSVQTKIVTGADKVDSWSSTTWDGAL----------LNVKVIITTPQV 169 Query 107 LQMALTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGL 166 L AL V ++ +L+V DE HH +K+ Y+ +M ++ + +P+P++LGL Sbjct 170 LLDALL----HGFVNISSLALMVFDEAHHCNKNHAYSRVMKEFYWESKTKHEPVPRILGL 225 Query 167 TASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQ 226 TASP + I+ + +L + LD C SP +L +SQ+P +++ + Sbjct 226 TASP------VVRSDISSLKRLESTLDAVC-RSPTRHREELIANSQRPA-LFSIIYNPKL 277 Query 227 DP----FGDLLKKLMDQIH--DHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVY 280 P F + L KLM + + LE P + ++ ++ KL +A ++E+R Y Sbjct 278 QPYAAGFSESLTKLMAARNKLNILEDPYVV-SLRAEISDRSRRKLEKA-----IKEKRTY 331 Query 281 ---------------ALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAER 325 A L + I + +R LA + +R+ + AE Sbjct 332 VQDTMKSFCRRSMEMAKELGAWAADWFISEAIRLF--LAGI----YRQGASSKSFRDAEV 385 Query 326 RLLA-LFDDRKNE-LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSL 383 LA +F D E L TH + E +++I++ + R I F + R + L Sbjct 386 IFLARVFQDANIEPPPPLTTHSGLS---EKVQRIIEVLLNYDKDARAICFVKERATTVVL 442 Query 384 LLWLQQQQGLQTVDIRAQLLIGA----GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATS 439 L + + R ++G G + + + ++ F++G N+LVATS Sbjct 443 SHILTTHPEVSS-KFRIGTMVGTSFVPGVKRDFLDLPETGGSQCLEAFREGRKNMLVATS 501 Query 440 VAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQS-VYAFVATEGSRELKRELINEA 498 V EEG+D+P CN+++ + N + +Q RGRAR QS +Y FV E + EA Sbjct 502 VLEEGIDVPACNLIICFDKPNNLRAFIQRRGRARMRQSHLYLFVEDEAEADW------EA 555 Query 499 LETLME 504 LE M+ Sbjct 556 LEAQMK 561 >sp|Q7XD96|DCL3B_ORYSJ Endoribonuclease Dicer homolog 3b OS=Oryza sativa subsp. japonica OX=39947 GN=DCL3B PE=3 SV=2 Length=1637 Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 130/504 (26%), Positives = 216/504 (43%), Gaps = 47/504 (9%) Query 9 EVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK-----VVVLVNRVHLVTQH 63 EV AL G N I L TG+GKT A +A+ H V + VV L VHLV Q Sbjct 45 EVFEAALRG-NTIAVLDTGSGKTMVAVMLAREHARRVRAGEAPRRIVVFLAPTVHLVHQQ 103 Query 64 GEEFRRMLDGRWTVTTLSGDMGPRAGFGH----LARCHDLLICTAELLQMALTSPEEEEH 119 E R D + + + +G G H + R +++++ T ++L AL Sbjct 104 FEVIREYTDLDVMMCSGASRVG-EWGADHWKEEVGR-NEIVVMTPQILLDAL----RHAF 157 Query 120 VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASP-GTGGASKL 178 + ++ SL++ DECH Y IM ++ +Q P V G+TASP T GAS L Sbjct 158 LTMSAVSLLIFDECHRACGSHPYARIMKEF----YFGSQWRPDVFGMTASPVATKGASTL 213 Query 179 DGAINHVLQLCANLDTWC-IMSPQNCCPQLQEHSQQPCKQY-----NLCHRRSQ-----D 227 H+ QL LD I+ +N + K Y + + +S+ D Sbjct 214 HNCEAHISQLELTLDAKIYIVEDRNELESFSPPTTIVNKYYDAYMVDFDNLKSKLQIFSD 273 Query 228 PFGDLLKKLM----DQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALH 283 F LL L ++ D + E SRK ++ + + + L++ L + V +H Sbjct 274 EFDSLLVGLQESPSNKFKDTDNILETSRKSLSRYHGKILYSLND---LGPIITSEVVKIH 330 Query 284 LRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLAT 343 + D + + +L L Y +E ++ + + + + + +E L Sbjct 331 IESVKPLCDSEDCIFSKASL-CLHMSYFKEALSLIEEILPQGYGELMKSESGSE--ELTK 387 Query 344 HGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLL 403 G + K+ L I + F SSN +IF +A ++ +++ I Sbjct 388 RGYISSKVNTLINIF-KSFGSSNEVLCLIFVDRIITAKAVERFMRGIVNFSCFSISYL-- 444 Query 404 IGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI 463 G S+ ++ Q+ + F+ G +NLL T V EEG+D+P+C+ V+R+ L Sbjct 445 --TGGSTSKDALSPAVQRFTLDLFRAGKVNLLFTTDVTEEGVDVPNCSCVIRFDLPRTVC 502 Query 464 SMVQARGRARADQSVYAFVATEGS 487 S VQ+RGRAR + S + + G+ Sbjct 503 SYVQSRGRARRNNSEFILMIERGN 526 >sp|Q4WA22|DCL2_ASPFU Dicer-like protein 2 OS=Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293) OX=330879 GN=dcl2 PE=3 SV=2 Length=1388 Score = 103 bits (256), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 147/583 (25%), Positives = 248/583 (43%), Gaps = 82/583 (14%) Query 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVV-VLVNRVHLVTQ 62 R+YQ E++ +++ +NII+ + TG+GKT A K L+ KVV L V L Q Sbjct 17 RNYQLEMLEASMK-ENIIVAMDTGSGKTHIAVLRIKAELDICSPDKVVWFLAPTVALCIQ 75 Query 63 HGEEFRRMLDGRWTVTTLSGD----MGPRAGFGHLARCHDLLICTAELLQMALTSPEEEE 118 E L T T D ++ + + + +++ T +L AL+ Sbjct 76 QHEVIASNLPAVRTRTLTGLDKVELWTDQSIWDAVLNGYRVIVSTHAVLADALS----HG 131 Query 119 HVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQP--LPQVLGLTASPGTGGAS 176 V+++ +L++ DE HH + N IM + L ++ P +P+++GLTASP Sbjct 132 FVKMSQLALLIFDEAHHCTRRHAANKIMQDFYHPTLTKSGPAAVPRIMGLTASPVVRS-- 189 Query 177 KLDGAINH--VLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLK 234 NH +L + +NLD C +P+ +L + + +P Q DP G Sbjct 190 ------NHQELLMVESNLDAVC-RTPRLHRQELLKFTHRPHLQQ--IWYTPTDPAGFRSA 240 Query 235 KL-MDQIHDHLEMPELSRKFGTQMYEQQVVK--LSEAAALAGLQEQRVYAL-HLRRYND- 289 L + ++ E ++ G Y Q++ K L + A L + Y LRR+ D Sbjct 241 SLTLGALYHAWENLDI----GDDPYIQRLRKSPLDDRALKKALLTGKTYCREQLRRFVDR 296 Query 290 -------------ALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKN 336 I+ +++ L+D +++ + L+ Sbjct 297 SRHIFEELGEWAAEYYIYASIKQ------LRDRVRDSYMSGDWDEAEKAYLVDFLSKIPT 350 Query 337 ELAHLATHGPE----NPKLEMLEKIL----QRQFSSSNSPRGIIFTRTRQSAHSLLLWLQ 388 H A + P+ +PK E L L QR+FS G+IF + R + ++ L Sbjct 351 SDIHFALNDPDGFRISPKFESLLNFLDSSDQREFS------GLIFVKQRVTVSAMTSLLS 404 Query 389 QQQGLQTVDIRAQLLIGAGNSSQSTH-----MTQRDQQEVIQKFQDGTLNLLVATSVAEE 443 + R +G NSS S + + Q++ + F+ G NL++AT V EE Sbjct 405 VHPYTRE-RFRCAAYVGWSNSSASKDILGDLLNMQLQRDTLDDFRSGRKNLIIATDVLEE 463 Query 444 GLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYA--FVATEGSRELKR--ELINEAL 499 G+D+ C+VVV Y N S +Q RGRAR QS +A F + S ++ R +L + Sbjct 464 GIDLSACSVVVCYDKPPNLKSFIQRRGRARRKQSTFAIMFPTDDTSADVSRWQDLEQAMI 523 Query 500 ETLME-----QAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQA 537 E + Q+V+A++ +D+ + D A LT A A Sbjct 524 EAYQDDERQLQSVSALESLDEEVMERLTGDSTSAVLTADMAMA 566 >sp|Q1DKI1|DCL1_COCIM Dicer-like protein 1 OS=Coccidioides immitis (strain RS) OX=246410 GN=DCL1 PE=3 SV=3 Length=1500 Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 135/525 (26%), Positives = 221/525 (42%), Gaps = 53/525 (10%) Query 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHL--ETVDGAK------VVVLVN 55 R YQ E+ A + NII L TG+GKT A + K + E +D + LV+ Sbjct 100 REYQVELFEKA-KKDNIIAVLDTGSGKTLIAVLLLKHIIEQELIDRSAEKPHRVSFFLVD 158 Query 56 RVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFG-----HLARCHDLLICTAELLQMA 110 V LV Q + ++ R V G M G HLA+ + +++CTAE+L Sbjct 159 SVTLVFQQAAVLQNNINQR--VDKFCGAMETDLWNGETWERHLAK-NMVIVCTAEVLYQC 215 Query 111 LTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASP 170 L V++ +L++ DE H+ KD Y I+ + LK A+ P++ G+TASP Sbjct 216 LL----HAFVKMENINLLIFDEAHNAKKDHPYARIVKDFY-LKDGNAK-RPKIFGMTASP 269 Query 171 GTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFG 230 + A N L + + T +S L++ +P ++ + R PF Sbjct 270 VDAKMDVVKAARNLETLLNSQIATASNLS------LLRQSVPRPNEEV-WSYDRLDQPFE 322 Query 231 DLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDA 290 L K + L E F + ++ L E+ + L R A Sbjct 323 TRLYKELRSRFGDLRALEKLFTFSLKASSNLGAWCADWVWSYALTEESLPKLEGRAARTA 382 Query 291 LLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPK 350 + + V A +Q + ++ L + L H Sbjct 383 MGNLPIAKIVRPEAEIQRIREASEIIRSHKFGDPAVRPELLSPKVRRLHH---------- 432 Query 351 LEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA-GNS 409 E+L + F + I+FT R +A L + + T +R +LIG ++ Sbjct 433 -ELL-----KYFERHTDTKCIVFTEQRHTARILCDLFSR---IGTKHLRPGVLIGVRSDA 483 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 S +++ R Q + F+ G +N L ATSVAEEGLDIP CN++VR+ L + +Q+R Sbjct 484 SGGMNISFRQQVLAVVSFRKGEVNCLFATSVAEEGLDIPDCNLIVRFDLASTLTQYIQSR 543 Query 470 GRARADQSVYAFVATEGSRELKRELIN--EALETLMEQAVAAVQK 512 GRAR S +A + E + RE +N ++ E +M++ ++ K Sbjct 544 GRARHMNSTFAHL-VERDNFVHRESVNHLQSSEEIMKRFCISLPK 587 >sp|P0C5H7|DCL2_EMENI Dicer-like protein 2 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=dcl2 PE=3 SV=1 Length=1429 Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 137/529 (26%), Positives = 225/529 (43%), Gaps = 80/529 (15%) Query 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQH 63 RSYQ E+ +L+G NII+ + TG+GKT+ A LE DG + L V L Q Sbjct 15 RSYQLEMFEASLKG-NIIVVMGTGSGKTQIALLRIIHELENSDGKLIWFLAPTVPLCLQQ 73 Query 64 GEEFRRMLDGRWTVTTLSGD----MGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 + + + T L D +A + + +++ T +L A+T Sbjct 74 HRVISQHIPAVKSRTLLGSDKVELWTEQAVWDAVLEGLQVIVSTPAVLHDAMT----HGF 129 Query 120 VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQP--LPQVLGLTASPGTGGASK 177 V ++ L++ DE HH + N+IM + LQ P +P++LGLTAS G S Sbjct 130 VRISRLGLLIFDEAHHCIRKHPTNMIMRNFYHPALQEYGPGAVPRILGLTASAG----SS 185 Query 178 LDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQ---YNLCHRRSQDPF-GDLL 233 +G + + NL++ C +PQ +L E++ P + Y + + + G L Sbjct 186 REG----LQTIEMNLNSVCT-TPQAHRQELLEYTHMPELRRVLYTPLMKENASLWEGSTL 240 Query 234 KKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYA--LHLRRYNDAL 291 +KL+++ Y +K A+ QE ++A +R + L Sbjct 241 QKLLER---------------DNTYCSGQMKTFVCKAVHIFQELGIWAAEYFIRASVEEL 285 Query 292 LIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG------ 345 L H V + L D+ RE++ IL K+ + + H Sbjct 286 LSHAYVHSKIDL----DYDEREYL--VNILS------------KSPVPDIDVHSTDPKDF 327 Query 346 PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 P +PK E L L + S G+IF R +A +++ +L R IG Sbjct 328 PVSPKFEALISFLMSTEDINFS--GLIFVEQR-AAVTVMSYLLSTHPSTRDRFRTGSFIG 384 Query 406 AGNSSQSTHM-----TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT 460 NS+ M + + Q + + F+ G NL+VAT V +EG+D+ C+VV+ Y + Sbjct 385 MSNSTNRKTMLGDLLSAKMQPDTLDDFRYGRKNLIVATDVLKEGIDVSACSVVICYNIPK 444 Query 461 NEISMVQARGRARADQSVYAFVAT---EGSRELKRELINEALETLMEQA 506 S +Q RGRAR S Y+ + + +GS K + E +ME+A Sbjct 445 GFESFIQRRGRARRQNSTYSMMLSTEDDGSTLDKW----QKFEKIMEEA 489 >sp|Q2H0G2|DCL1_CHAGB Dicer-like protein 1 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=DCL1 PE=3 SV=2 Length=1607 Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 78/226 (35%), Positives = 117/226 (52%), Gaps = 25/226 (11%) Query 350 KLEMLEKILQRQFSS-SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN 408 K+ +L +IL+ +F + R I+F R R A SLL L QQ ++ + +L+G G Sbjct 461 KVVILLRILRGEFRGVDHKRRCIVFVRQRNVA-SLLTDLLQQPEMRIPGLEPGILVGGGR 519 Query 409 ---SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465 S + +T RDQ I KF+ G LN + ATSVAEEGLDIP CNV++RY L I Sbjct 520 PEASYDNAKVTYRDQVLTIIKFKKGELNCIFATSVAEEGLDIPDCNVIIRYDLNNTLIQY 579 Query 466 VQARGRARADQSVYA-FVATEGSRELKRELINEALETLME---QAVAAVQKM-----DQA 516 +Q+RGRAR + S+Y V +E +K+ N+ E + +A+ A +K+ D Sbjct 580 IQSRGRARQEGSIYIHMVESENEEHVKKVCQNQESEDALRKFCEALPADRKLTGNNFDME 639 Query 517 EYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQLLCINCMVA 562 + K +D +Q + + A R N +Q L+C+ VA Sbjct 640 YFLRKEKDQRQYTVPETGA----RLNYKQ-------SLICLAAFVA 674 Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 65/256 (25%), Positives = 103/256 (40%), Gaps = 37/256 (14%) Query 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHL--ETVDGAK------VVVLVN 55 R YQ E+ A + +N I L TG+GKT AA + + + E D +K LV+ Sbjct 136 RDYQLELFERA-KTQNTIAVLDTGSGKTLIAALLLRWTIQNELEDRSKRLPKRIAFFLVD 194 Query 56 RVHLVTQHGEEFRRMLDGRWTVTTLSGDM--GPRAGFGHLARCHDL-LICTAELLQMALT 112 +V LV Q LD + + GDM F H ++ ++CTAE+L LT Sbjct 195 KVALVFQQHAVLACNLD--YPLEKFCGDMVEDVTQDFWHKTFDENMAIVCTAEILYQCLT 252 Query 113 SPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYL--------ELKLQRAQPLPQVL 164 ++ + +L+V DE HHT K+ Y I+ + L++ RA V Sbjct 253 ----HSYIRMDQVNLLVFDEAHHTKKNHPYARIIKDFYAEVKDLNKRLRISRAMTASPV- 307 Query 165 GLTASPGTGGASKLDGAINHVLQLCAN----------LDTWCIMSPQNCCPQLQEHSQQP 214 P + +L+G ++ + A+ L + C P+ + + Sbjct 308 DAQIDPKIARSPELEGLLHSQIATVADPTALHNSSTKLKREVTVEYGKCLPEFETGLNRA 367 Query 215 CKQYNLCHRRSQDPFG 230 K HR Q PF Sbjct 368 LKDLVGEHRLFQKPFA 383 >sp|A4RHU9|DCL2_PYRO7 Dicer-like protein 2 OS=Pyricularia oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 GN=DCL2 PE=3 SV=3 Length=1485 Score = 100 bits (248), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 139/523 (27%), Positives = 228/523 (44%), Gaps = 74/523 (14%) Query 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLE-TVDGAKVVVLVNRVHLVTQ 62 R+YQ E+ +++ +NII+ + TG+GKT+ A + LE T +V L V L Q Sbjct 66 RAYQLEMFQASMQ-QNIIVSMDTGSGKTQVAVLRIRAELERTPPEKRVWFLAPTVALCAQ 124 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRA-----GFGHLARCHDLLICTAELLQMALTSPEEE 117 E R + ++ ++GD + + + +++CT +L AL+ Sbjct 125 QYEVIRSQIKVANSIV-MTGDDNVDSWSDVQTWDAVLANVRVVVCTYMILFEALS----H 179 Query 118 EHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASK 177 V + SL+V+DE H+ +IM ++ + +P +LGLTASP Sbjct 180 AFVTMDSISLLVMDEAHNCTGKFPGRLIMKRFYMPRKSAGDHVPHILGLTASP------V 233 Query 178 LDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQP---CKQYNLCHRRSQDPFGDLLK 234 + ++ + L ++LD+ C P +L + QP Y C RS + Sbjct 234 MKSDLSSMEDLESSLDSVC-RGPTLQREELFANVHQPTMTVTTYKECDLRSPVQY----T 288 Query 235 KLMDQIHDHLEMPELSRK-FGTQMYEQQVVK-LSEAAALAGLQEQRVYALH----LRRYN 288 + M+ +H E +++ + + Q+ K L E + L + Y + L+R + Sbjct 289 RNMNNLHLAFENLDIAEDPYVLHLMGQRTPKSLRELDRI--LTKLDTYTQNQMKALQRKS 346 Query 289 DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG--- 345 +L AVD+ Y V K L A L + D + H A G Sbjct 347 SSLFRELGQWAVDS-------YIYNVVEKVSNLDARSSWLGGWLDDEQRYLHRAIQGINA 399 Query 346 ---------PE--NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQ 394 PE + KL++L +IL+ SP GI+F + R +A L Q L Sbjct 400 LPVSAAIPAPEMTSIKLQVLLRILR---GYEGSPVGIVFVKERATAGIL------SQLLA 450 Query 395 TV-DIRAQLLIG--AGNSSQSTH-------MTQRDQQEVIQKFQDGTLNLLVATSVAEEG 444 + DI A+ +G G S + + Q D ++KF+ G +NLLVATSV EEG Sbjct 451 IIPDINARYKVGCMVGTSRYMSRKMNIHEVLQQGDDLLALEKFRSGAINLLVATSVLEEG 510 Query 445 LDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFVATEGS 487 +D+P CN+V+ + + N S +Q RGRAR +S + E S Sbjct 511 IDVPVCNLVICFDMPANLKSFIQRRGRARMRESKLHLMIEEDS 553 >sp|Q9UT23|MPH1_SCHPO ATP-dependent DNA helicase fml1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=fml1 PE=1 SV=2 Length=834 Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 130/538 (24%), Positives = 228/538 (42%), Gaps = 66/538 (12%) Query 1 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV 60 + R YQ+ ++ AL +N+++ LPTG GKT AA V +L + +V + LV Sbjct 71 VSFRDYQFNIVQKAL-FENVLVALPTGLGKTFIAAVVMMNYLRWFPKSYIVFMAPTKPLV 129 Query 61 TQHGEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 TQ E ++ + LSG + P + ++ T + + + + Sbjct 130 TQQMEACYKITGIPKSQTAELSGHV-PVTTRNQYYQSRNVFFVTPQTILNDI----KHGI 184 Query 120 VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLD 179 + T S +V+DE H + + Y V + L L + + +L L+A+P +KL+ Sbjct 185 CDRTRISCLVIDEAHRSTGNYAY-VEVVHLLSLSNKNFR----ILALSATP----GNKLE 235 Query 180 GAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQ 239 AI +V+ D+ I +++ + QY ++ D F L + Sbjct 236 -AIQNVI------DSLHI-----SRIEIRTENSIDISQY--VQKKEVDFFPVDLSAEITD 281 Query 240 IHDHLEM---PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDT 296 I D P L + Y Q K + + +Q ++ + + A D Sbjct 282 IRDRFSSILEPMLQKLNKGNYYRIQNAK--DITSFTVVQAKQAFLAMSGQNFPANQKWDI 339 Query 297 VRAVDALA------------ALQDFYHREHVTKTQILCA----ERRLL------ALFDDR 334 + DALA ++ FY + + + ++R++ L DD Sbjct 340 LNTFDALATFAYPLNLLLNHGIRPFYQKLREVEEECFVGRSGYKKRIINHENYRPLMDDI 399 Query 335 KNELAHLATHGPENPKLEMLEKILQRQFSS--SNSPRGIIFTRTRQSAHSLLLWLQQQQG 392 + L + G +PKLE LE+I+ F + R +IF R SA +L +L G Sbjct 400 EILLRDQSFVG--HPKLEHLERIVTEYFEKEQTKDTRIMIFVEIRSSAEEILRFL----G 453 Query 393 LQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNV 452 ++R + IG ++ M+Q+ Q E +++FQ G +N L+ATS+ EEGLDI ++ Sbjct 454 KFYPNVRPAIFIGQSAVRKAAGMSQKLQNETVKQFQKGEVNTLIATSIGEEGLDIGEVDM 513 Query 453 VVRYGLLTNEISMVQARGRARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAA 509 ++ Y + I M+Q GR + Y + + T G E K E +A TL + V+ Sbjct 514 IICYDASASPIRMLQRMGRTGRKRKGYIYMLLTRGKEEAKWERAKDAYRTLQDNIVSG 571 >sp|Q09884|DCR1_SCHPO Protein Dicer OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=dcr1 PE=1 SV=1 Length=1374 Score = 99.8 bits (247), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 62/171 (36%), Positives = 95/171 (56%), Gaps = 16/171 (9%) Query 326 RLLALFDDRKNELAHLATHGPENP---------KLEMLEKILQRQFSSSNSPRGIIFTRT 376 RL +D KN + +GP P K+ L ++L+ + S+S R +IF Sbjct 313 RLKIFVEDWKNN--KYSDNGPRIPVFDSTDVTDKVFKLLELLKATYRKSDSVRTVIFVER 370 Query 377 RQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH-MTQRDQQEVIQKFQDGTLNLL 435 + +A +L L+++ L +IRA IG G S Q MT R Q++ + KF+ G N+L Sbjct 371 KATAFTLSLFMKT---LNLPNIRAHSFIGHGPSDQGEFSMTFRRQKDTLHKFKTGKYNVL 427 Query 436 VATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVY-AFVATE 485 +AT+VAEEG+D+P CN+V+R+ + VQ+RGRARA S + F+ TE Sbjct 428 IATAVAEEGIDVPSCNLVIRFNICRTVTQYVQSRGRARAMASKFLIFLNTE 478 Score = 67.4 bits (163), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 55/192 (29%), Positives = 91/192 (47%), Gaps = 23/192 (12%) Query 3 LRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLE--------TVDGAKV-VVL 53 LR YQ +V A +N ++ + TGAGKT A + K+ LE ++ K+ V L Sbjct 12 LRKYQQDVYNIA-SKQNTLLVMRTGAGKTLLAVKLIKQKLEEQILIQESNLEHKKISVFL 70 Query 54 VNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAG---FGHLARCHDLLICTAELLQMA 110 VN+V LV Q E R L + V G++ ++ +++++ TA+L + Sbjct 71 VNKVPLVFQQAEYIRSQLPAK--VGMFYGELSIEMSEQLLTNIILKYNVIVITADLFYLF 128 Query 111 LTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLE----LKLQRAQPLPQVLGL 166 L + + +LI+ DECHH + Y IM+ + + ++ LP++ G+ Sbjct 129 LA----RGFLSINDLNLIIFDECHHAIGNDAYARIMNDFYHRAKAVLSKKHFTLPRIFGM 184 Query 167 TASPGTGGASKL 178 TASP TG L Sbjct 185 TASPFTGKKGNL 196 >sp|A4RKC3|DCL1_PYRO7 Dicer-like protein 1 OS=Pyricularia oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 GN=DCL1 PE=3 SV=2 Length=1591 Score = 99.4 bits (246), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 56/149 (38%), Positives = 86/149 (58%), Gaps = 4/149 (3%) Query 351 LEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQT--VDIRAQLLIGAGN 408 +E+L + Q S+ N+ + I+F + R +A LL L +Q ++T D++ LIGAG Sbjct 441 IEILAECFS-QASAGNAIQCIVFVKRRDTA-VLLNALCEQAEIRTKIPDLKGAFLIGAGR 498 Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 + T R Q++ + +F+DG +N L ATS+AEEGLDIP CNVV+R+ L I +Q+ Sbjct 499 GGNAAFTTTRQQEQTVSRFRDGEINCLFATSIAEEGLDIPGCNVVIRFDLHGTTIQYIQS 558 Query 469 RGRARADQSVYAFVATEGSRELKRELINE 497 RGRAR S + + G+ E R + Sbjct 559 RGRARMRNSWFIHMTEFGNPEHNRRWFQD 587 Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 59/180 (33%), Positives = 88/180 (49%), Gaps = 21/180 (12%) Query 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK--------VVVLVN 55 R YQ E+ A + KN I L TG GKT A + + +E GA+ LV+ Sbjct 109 REYQIELFERAKQ-KNTIAVLDTGTGKTLIAILLIRHIIELELGARWQGREKRITFFLVD 167 Query 56 RVHLVTQHGEEFRRMLDGRWTVTTLSGDM-----GPRAGFGHLARCHDLLICTAELLQMA 110 +V LV Q + R LD + VT L GD + F L + ++++CTAE+L Sbjct 168 KVALVRQQTDHIRANLD--FPVTGLHGDTVRNLWYSKEYFEKLLQEQEVVVCTAEILYRC 225 Query 111 LTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASP 170 L ++ ++ SL+V DE HH K+ VY I+ + L + Q P++ G+TASP Sbjct 226 L----HRSYLNISQVSLVVFDEAHHAKKNHVYARIIKDFY-LMEEDCQKRPRIFGMTASP 280 >sp|Q5N870|DCL3A_ORYSJ Endoribonuclease Dicer homolog 3a OS=Oryza sativa subsp. japonica OX=39947 GN=DCL3A PE=2 SV=1 Length=1651 Score = 97.1 bits (240), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 129/526 (25%), Positives = 221/526 (42%), Gaps = 69/526 (13%) Query 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLE---TVDGAKVVV-LVNRVHL 59 R YQ +V A+ +N I L TGAGKT A + K + T + KV++ L V L Sbjct 33 RRYQLDVYEVAMR-RNTIAMLDTGAGKTMIAVMLIKEFGKINRTKNAGKVIIFLAPTVQL 91 Query 60 VTQHGEEFRRMLDGR----WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE 115 VTQ E D + + GPR + + +++ T ++ AL Sbjct 92 VTQQCEVIEIHTDFEVEQYYGAKGVDQWTGPR--WQEQISKYQVMVMTPQVFLQAL---- 145 Query 116 EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASP--GTG 173 + L + SL++ DECHH + Y IM ++ +++ P V G+TASP G Sbjct 146 RNAFLILDMVSLMIFDECHHATGNHPYTRIMKEFY----HKSEHKPSVFGMTASPVIRKG 201 Query 174 GASKLDGAINHVLQLCA--NLDTWCIMSPQN------CCPQLQEHSQQPCKQYN---LCH 222 +S LD Q C NL I + + C P +E C+ Y+ +C Sbjct 202 ISSHLDCE----GQFCELENLLDAKIYTVSDREEIEFCVPSAKEM----CRYYDSKPVCF 253 Query 223 RRSQDPFG-----------DLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAAL 271 + G +L K D D ++ + S++ ++ + L + + Sbjct 254 EDLSEELGVLCSKYDALITELQNKRSDMYKDADDITKESKRRLSKSIAKICYCLDDVGLI 313 Query 272 AGLQEQRVYALHLRRYNDALLIHDTVRAVDA--------LAALQDFYHREHVTKTQILCA 323 + ++ + R + + + V A D L A H + + L Sbjct 314 CASEATKIC---IERGQEKGWLKEVVDATDQQTDANGSRLFAENSALHMKFFEEALHLID 370 Query 324 ER--RLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAH 381 +R + + + + ++ A G +PKL L +I FS+S R +IF + +A Sbjct 371 KRLQQGIDMLLNSESGCVEAAKTGYISPKLYELIQIFH-SFSNSRHARCLIFVDRKITAR 429 Query 382 SLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVA 441 + +++ L + L G +S + +T + Q++ + F+ G +NLL T VA Sbjct 430 VIDRMIKKIGHLAHFTV--SFLTGGRSSVDA--LTPKMQKDTLDSFRSGKVNLLFTTDVA 485 Query 442 EEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFVATEGS 487 EEG+ +P C+ V+R+ L S VQ+RGRAR + S Y + G+ Sbjct 486 EEGIHVPECSCVIRFDLPRTTRSYVQSRGRARQEDSQYILMIERGN 531 >sp|A1D9Z6|DCL2_NEOFI Dicer-like protein 2 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dcl2 PE=3 SV=1 Length=1388 Score = 96.3 bits (238), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 144/582 (25%), Positives = 243/582 (42%), Gaps = 80/582 (14%) Query 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVV-VLVNRVHLVTQ 62 R+YQ E++ +++ +NII+ + TG+GKT A K L+ K+V L V L Q Sbjct 17 RNYQLEMLEASMK-ENIIVAMDTGSGKTHIAVLRIKAELDICPPDKLVWFLAPTVALCIQ 75 Query 63 HGEEFRRMLDGRWTVTTLSGD----MGPRAGFGHLARCHDLLICTAELLQMALTSPEEEE 118 E L T T D ++ + + + +++ T +L AL+ Sbjct 76 QHEVIASNLPAVRTRTLTGLDKVELWTEQSIWDAVLNGYRVIVSTHAVLADALS----HG 131 Query 119 HVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQP--LPQVLGLTASPGTGGAS 176 V+++ +L++ DE HH + N IM + L ++ P +P+++GLTASP Sbjct 132 FVKMSRLALLIFDEAHHCTRRHAANKIMRDFYHPTLTKSGPGAVPRIMGLTASPVVRS-- 189 Query 177 KLDGAINH--VLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLK 234 NH +L + +NLD C +P+ +L + + +P Q DP G Sbjct 190 ------NHQELLTVESNLDAVC-RTPRVHRQELVKFTHRPHLQQ--IWYTPTDPAG---F 237 Query 235 KLMDQIHDHLEMPELSRKFGTQMYEQQVVK--LSEAAALAGLQEQRVYAL-HLRRYND-- 289 K Q L + G Y Q++ K L + A L + Y LRR+ D Sbjct 238 KSASQTLGALYHAWETLDIGDDPYIQRLRKSPLDDTALKKALLTGKTYCREQLRRFVDRS 297 Query 290 ------------ALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNE 337 I+ +++ L D +++ + L+ Sbjct 298 RHIFEELGEWAAEYYIYASIKQ------LGDRVRNSYMSGDWDEAEKAYLVDFLSKIPAS 351 Query 338 LAHLATHGPEN----PKLE----MLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQ 389 LA + P + PK E L+ + +R+FS G+IF + R + ++ L Sbjct 352 EIQLALNDPGSFRISPKFESLLNFLDSLDEREFS------GLIFVKQRATVSAMTSLLSV 405 Query 390 QQGLQTVDIRAQLLIGAGNSSQSTH-----MTQRDQQEVIQKFQDGTLNLLVATSVAEEG 444 + R +G N S S + + Q++ + F+ G NL++AT V EEG Sbjct 406 HPCTRE-RFRCAAYVGWSNGSASKDILGDLLNMQLQRDTLDDFRSGRKNLIIATDVLEEG 464 Query 445 LDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYA--FVATEGSRELKR--ELINEALE 500 +DI C+VVV Y N S VQ RGRAR QS +A F + S ++ + +L +E Sbjct 465 IDISACSVVVCYDKPPNLKSFVQRRGRARRKQSTFAIMFPTDDASADVSKWQDLEQAMIE 524 Query 501 TLME-----QAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQA 537 + Q+V+A++ +D+ + + A LT A A Sbjct 525 AYQDDERQLQSVSALESLDEEVMERLTVESTSAVLTADMAMA 566 >sp|P34529|DCR1_CAEEL Endoribonuclease dcr-1 OS=Caenorhabditis elegans OX=6239 GN=dcr-1 PE=1 SV=3 Length=1910 Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 129/546 (24%), Positives = 231/546 (42%), Gaps = 116/546 (21%) Query 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRH----LETVD--GAKVVVLVNRV 57 R YQ E++ A + KN I+ L TG+GKT A + K + +D G + +V +V Sbjct 14 RDYQVELLDKATK-KNTIVQLGTGSGKTFIAVLLLKEYGVQLFAPLDQGGKRAFFVVEKV 72 Query 58 HLVTQ---HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP 114 +LV Q H E G+ T SG + + H +++ TA+ L + Sbjct 73 NLVEQQAIHIEVHTSFKVGQVHGQTSSGLWDSKEQCDQFMKRHHVVVITAQCLLDLI--- 129 Query 115 EEEEHVELTVFSLIVVDECHHT-HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTG 173 ++++ +++ DECHH Y IM Y LK + +P+P+VLGLTAS Sbjct 130 -RHAYLKIEDMCVLIFDECHHALGSQHPYRSIMVDYKLLK--KDKPVPRVLGLTASLIKA 186 Query 174 GAS---------KLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRR 224 + KL+ A++ V++ ++L + L ++ +P + +C Sbjct 187 KVAPEKLMEQLKKLESAMDSVIETASDLVS------------LSKYGAKPYEVVIICKDF 234 Query 225 SQDPFG----DLLKKLMDQ----------------------IHDHLEMPE-LSRKFG--- 254 G D + ++ D+ I D L+ + R+ G Sbjct 235 EIGCLGIPNFDTVIEIFDETVAFVNTTTEFHPDLDLDPRRPIKDSLKTTRAVFRQLGPWA 294 Query 255 ----TQMYEQQVVKLSEAAALAG-----LQEQRVYALHLRRYNDALLIHDTVRAVDALAA 305 Q++E+++ K+ ++ L L + + ++R L+ ++ + ++ A Sbjct 295 AWRTAQVWEKELGKIIKSQVLPDKTLRFLNMAKTSMITIKR-----LLEPEMKKIKSIEA 349 Query 306 LQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSS 365 L+ + +R++ LF+ L T PE K M + + Sbjct 350 LRPY-------------VPQRVIRLFE-------ILETFNPEFQKERM-------KLEKA 382 Query 366 NSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD--IRAQLLIGAGN----SSQSTHMTQRD 419 IIF R A+SLLL ++ + + + ++GA SS S + +R Sbjct 383 EHLSAIIFVDQRYIAYSLLLMMRHIKSWEPKFKFVNPDYVVGASGRNLASSDSQGLHKR- 441 Query 420 QQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVY 479 Q EV+++F +N L+ATSV EEG+D+ CN+V+++ + S VQ++GRAR S Y Sbjct 442 QTEVLRRFHRNEINCLIATSVLEEGVDVKQCNLVIKFDRPLDMRSYVQSKGRARRAGSRY 501 Query 480 AFVATE 485 E Sbjct 502 VITVEE 507 >sp|Q2VF19|DCL1_CRYPA Dicer-like protein 1 OS=Cryphonectria parasitica OX=5116 GN=DCL-1 PE=3 SV=1 Length=1548 Score = 89.7 bits (221), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 51/143 (36%), Positives = 78/143 (55%), Gaps = 2/143 (1%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 KL+ L K+L+ F+ S S R I+F R +A LL + + ++ L+GA Sbjct 425 KLKTLSKLLEEYFTDS-SIRCIVFVERRWTA-KLLTDFFESHAAEIPGLKVGSLMGANAE 482 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 S+ + R+Q I F+ G N + ATSVAEEGLDIP CN+++R+ + I +Q+R Sbjct 483 GGSSQTSFREQIRTILSFKKGNTNCIFATSVAEEGLDIPDCNLIIRFDICKTMIQYIQSR 542 Query 470 GRARADQSVYAFVATEGSRELKR 492 GRAR S Y + G+ + +R Sbjct 543 GRARQADSTYIHLIEGGNGDHRR 565 Score = 60.1 bits (144), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 61/208 (29%), Positives = 92/208 (44%), Gaps = 25/208 (12%) Query 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHL--ETVDGAK------VVVLVN 55 R YQ E+ A + +N I L TG+GKT AA + + E D AK LV Sbjct 100 RDYQMELFERAKQ-QNTIAVLDTGSGKTLIAALLLDHTVNQELEDRAKGLPRRIAFFLVE 158 Query 56 RVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRA---GFGHLARC-HDLLICTAELLQMAL 111 +V L Q L +V SG+ GF H++++CTAE+L L Sbjct 159 KVALAFQQHAVLECNLAH--SVAVFSGESIKNTWTKGFWETQLADHEVIVCTAEILNQCL 216 Query 112 TSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPG 171 + ++ + +L+V DE HHT K+ Y I+ Y R LP++ G+TASP Sbjct 217 ----QYAYIRIDQINLLVFDEAHHTKKNHPYARIIKDYYASGKDRGLRLPRIFGMTASPV 272 Query 172 TG------GASKLDGAINHVLQLCANLD 193 A +L+G ++ + A+ D Sbjct 273 DALIDVRQAAIELEGLLHSRIATTADPD 300 >sp|A4RN08|MPH1_PYRO7 ATP-dependent DNA helicase MPH1 OS=Pyricularia oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 GN=MPH1 PE=3 SV=1 Length=1102 Score = 89.7 bits (221), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 125/497 (25%), Positives = 210/497 (42%), Gaps = 61/497 (12%) Query 3 LRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ 62 +R YQ+ ++ L N ++ LPTG GKT AA V A++V + L +Q Sbjct 140 IRDYQFSIVKNGL-FNNTLVALPTGLGKTFIAATVILNFFRWTRNAQMVFVAPTKPLASQ 198 Query 63 HGEEFRRMLD-GRWTVTTLSGDMGP--RAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 E + R T L+G+ P R R L T + L L+ + + Sbjct 199 QVEACLNIAGIPRSQSTLLTGETKPVLREAEWEGKR---LFFMTPQTLMNDLS----KGY 251 Query 120 VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGT---GGAS 176 + L+VVDE H D Y + +E ++R +VL LTA+PG+ G Sbjct 252 ADPKRIVLLVVDEAHRATGDYAY----VKVIEF-IRRFSKSFRVLALTATPGSTVEGVQD 306 Query 177 KLDG-AINHV-LQLCANLDTW----------CIMSPQNCCPQLQEHSQQPCK--QYNLCH 222 +D ++HV ++ ++D ++ P + ++ E Q K + Sbjct 307 VIDNLGVSHVEIRTEESIDIRNYVHSREIDRVVLEPSDEMLRISELFSQALKPLHSKISQ 366 Query 223 RR---SQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRV 279 ++ +DP L+ D ++ P +F Q + ++ A+ + + Sbjct 367 QKIYIGRDPMSITTFGLLKARQDWMKGPG---RFANQGLKMMLM------AIFTILQSLA 417 Query 280 YALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFD--DRKNE 337 +A+ L Y+ +D + A + +D + K Q L E+ + D + + Sbjct 418 HAIKLLNYHGIRPFYDNLVAF--RSETEDKGQKGSKYKRQ-LIGEQSFQEMMDLASKWLK 474 Query 338 LAHLATHGPENPKLEMLEKILQRQF---SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQ 394 + A H PKL L L F +S R I+F+ R SA + L + + Sbjct 475 IDGFAGH----PKLTHLCDNLLNYFMDAGEGSSTRVIVFSEYRDSAEEITRVLNVHKPM- 529 Query 395 TVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV 454 I A L +G +S +S M Q+ Q E I KF+DG N+LVATS+ EEGLDI ++++ Sbjct 530 ---ISASLFVGQADSKKSEGMKQKQQIETIAKFRDGIFNVLVATSIGEEGLDIGQVDLII 586 Query 455 RYGLLTNEISMVQARGR 471 Y ++ I M+Q GR Sbjct 587 CYDASSSPIRMLQRMGR 603 >sp|Q2UNX5|DCL2_ASPOR Dicer-like protein 2 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=dcl2 PE=3 SV=1 Length=1377 Score = 89.4 bits (220), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 156/593 (26%), Positives = 239/593 (40%), Gaps = 105/593 (18%) Query 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVV-VLVNRVHLVTQ 62 R YQ+E+ +L+ +NII+ + TG GKT+ A LE K+ L V L Q Sbjct 17 RQYQYEMFEASLK-ENIIVAMDTGTGKTQIALLRIAHQLEGGGPRKLTWFLTPTVALCLQ 75 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAG----FGHLARCHDLLICTAELLQMALTSPEEEE 118 E R L T D R + L + +++ T +L ALT Sbjct 76 QYEVIRSHLPAVRACTITGLDKVERWKSQYIWDELLKDKQVVVSTHAVLFEALT----HG 131 Query 119 HVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQR--AQPLPQVLGLTASPGTGGAS 176 V ++ L++ DE HH + N+IM + L++ +P +LGLTASP S Sbjct 132 FVRISQLGLLIFDEAHHCMRRHPANMIMLDFYHPTLRKHGRDSVPCILGLTASPVVRSKS 191 Query 177 KLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKL 236 + + L +NLD+ C +PQ +L ++ +P +C + P G L+ L Sbjct 192 Q------EMKTLESNLDSIC-KTPQVHKQELTTYAHRPELLPIICKAIDEGPGGRALQAL 244 Query 237 ------MDQIHDHLEMPELSRKF-GTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND 289 D D +P+ G+ Y+ +V+ + EQ ++R+ D Sbjct 245 EHAWDTADIDGDPDAIPQNGSLLNGSGEYKALMVRKTLC------NEQ------IKRFVD 292 Query 290 ALLIHDTVRAVDALAAL----QDFYHREHVTKTQILCAERRLLALFDDRK-----NELAH 340 R+ A L D+Y V + + ++ L ++D + N L+ Sbjct 293 --------RSRHIFAELGEWAADYYICTSVEQLRTTIRDQSLTMDWEDEERAYLSNFLSK 344 Query 341 LATH-------GPEN----PKL----EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLL 385 L P N PKL L+K +FS G+IF + R + L Sbjct 345 LPVAEVQANLADPNNFTMSPKLAALINFLDKFDDPEFS------GLIFVKQRVTVSVLAR 398 Query 386 WLQQQQGLQTVD-IRAQLLIGAGNSSQSTHMT-----QRDQQEVIQKFQDGTLNLLVATS 439 L QT D R +G S M + Q+ + F+ G NL+V TS Sbjct 399 LLSLHP--QTRDRFRCAAYVGMSVGSCRQDMVGDWHNAKKQRGTMDDFRSGRKNLIVTTS 456 Query 440 VAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYA--FVATEGSRELKRELINE 497 V EEG+D+ C VVV + N S +Q RGRAR +S YA F + +L+R I Sbjct 457 VLEEGIDVTACRVVVCFDKPANLKSFIQRRGRARQQKSTYAIMFSTADEHGDLRRWQI-- 514 Query 498 ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVE 550 +EQA+ YQ + R L++A AQ A EN + VE Sbjct 515 -----LEQAMVEA-------YQDEERRLREA-----EAQEAVDENVPEMITVE 550 >sp|Q0CWI2|MPH1_ASPTN ATP-dependent DNA helicase mph1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=mph1 PE=3 SV=2 Length=1100 Score = 88.6 bits (218), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 136/510 (27%), Positives = 215/510 (42%), Gaps = 81/510 (16%) Query 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQH 63 R YQ+ + L N+++ LPTG GKT AA + A++V + LV Q Sbjct 311 RDYQFNITQKGL-FHNLLVALPTGLGKTFIAATIMLNWFRWTRDAQIVFVAPTKPLVAQQ 369 Query 64 GEE-FRRMLDGRWTVTTLSGDMGP--RAGFGHLARCHDLLICT-AELLQMALTSPEEEEH 119 F R T L+G+ P RA R + T L+ + P+ Sbjct 370 VSACFGVAGIPRSQTTMLTGEAAPGIRAQEWQDKRVFFMTPQTLINDLKSGIADPKR--- 426 Query 120 VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASK-- 177 L+VVDE H Y V + ++L Q + VL LTA+PG+ S Sbjct 427 -----IVLLVVDEAHRATGGYAY-VEVVKFLRRYNQSFR----VLALTATPGSTVESVQA 476 Query 178 -LDG-AINHV-LQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLK 234 +DG I+ V ++ +LD + +N Q ++S++ LC DLL Sbjct 477 VIDGLEISKVEIRTEQSLDIREYVHARNTEVQTFKNSEEMV----LCM--------DLLS 524 Query 235 KLMDQIHDHLEM--------PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR 286 K + + D L P +G QQ + LS+A R + L+ Sbjct 525 KTLQPLVDQLRTLNAYWGRDPMALTAYGLTKSRQQWM-LSDAG--------RNSSFGLKG 575 Query 287 YNDALL--IHDTVRAVDALA--ALQDFY----HREHVTKTQILCAERRLLALFDDRKNEL 338 +A+ + +D L + FY H + T Q +R + + K + Sbjct 576 KVNAIFTVLASLAHGIDLLKYHGITPFYRHLLHFQGNTDGQKGGKYQRQIVQDEHFKKLM 635 Query 339 AHLA--THGPE---NPKLEMLEKILQRQF------------SSSNSPRGIIFTRTRQSAH 381 HL+ T PE +PKLE L++++ F +S ++ R +IF R SA Sbjct 636 NHLSPWTKNPEFIGHPKLEYLKQVVLNHFMDAGEGSAGAEGASQSTTRVMIFVHFRDSAE 695 Query 382 SLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVA 441 + L++ + + IR Q+ +G ++ S M Q+ Q V+QKF+ GT N +VATS+ Sbjct 696 EVARVLKRYEPM----IRPQVFVGQASAKGSDGMNQKTQLGVVQKFKQGTYNTIVATSIG 751 Query 442 EEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 EEGLDI +++V Y + I M+Q GR Sbjct 752 EEGLDIGEVDLIVCYDSSASPIRMLQRMGR 781 >sp|Q2URJ5|MPH1_ASPOR ATP-dependent DNA helicase mph1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=mph1 PE=3 SV=2 Length=1129 Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 135/509 (27%), Positives = 216/509 (42%), Gaps = 79/509 (16%) Query 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQH 63 R YQ+ + L N+++ LPTG GKT AA + + A+++ + LV Q Sbjct 325 RDYQFNIAQKGL-FHNLLVALPTGLGKTFIAATIMLNWFRWTESAQIIFVAPTKPLVAQQ 383 Query 64 GEE-FRRMLDGRWTVTTLSGDMGP--RAGFGHLARCHDLLICT-AELLQMALTSPEEEEH 119 F R T L+G+ P RA R + T L+ + P+ Sbjct 384 ISACFGIAGIPRSQTTMLTGEAAPGIRAEEWQNKRVFFMTPQTLINDLKSGIADPKR--- 440 Query 120 VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASK-- 177 L+VVDE H Y V + ++L Q + VL LTA+PG+ S Sbjct 441 -----IVLLVVDEAHRATGGYAY-VEVVKFLRRYNQSFR----VLALTATPGSTVESVQA 490 Query 178 -LDG-AINHV-LQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLK 234 +DG I V ++ +LD + +N Q ++S++ LC DLL Sbjct 491 VIDGLDIARVEIRTEQSLDIREYVHSRNTEVQTFKNSEEMV----LCM--------DLLS 538 Query 235 KLMDQIHDHLEM--------PELSRKFG-TQMYEQQVVKLSEAAALAGLQEQRVYALHLR 285 K + + D L P + FG T+ +Q + + A GL+ +V A+ Sbjct 539 KTLQPLVDQLRTLNAYWGRDPMMLTAFGLTKSRQQWMASDAGRNAHFGLK-GKVNAIFT- 596 Query 286 RYNDALLIHDTVRAVDALA--ALQDFY----HREHVTKTQILCAERRLLALFDDRKNELA 339 ++ A+D L + FY H + T+ Q +R + + K + Sbjct 597 ------VLASLAHAIDLLKYHGITPFYRHLLHFQSNTEGQKGGKYQRQVVQDESFKKLIN 650 Query 340 HLA--THGPE---NPKLEMLEKILQRQF------------SSSNSPRGIIFTRTRQSAHS 382 HL T PE +PKLE L+ ++ F S +S R +IF R SA Sbjct 651 HLQPWTKNPEFIGHPKLEYLKSVVLNHFMDAGEGSNGEASDSQSSTRIMIFVHFRDSAEE 710 Query 383 LLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAE 442 + L++ + + IR + +G ++ S M Q+ Q +++QKF+ GT N +VATS+ E Sbjct 711 VTRVLKRYEPM----IRPHVFVGQSSAKGSEGMGQKTQLDIVQKFKKGTYNTIVATSIGE 766 Query 443 EGLDIPHCNVVVRYGLLTNEISMVQARGR 471 EGLDI +++V Y + I M+Q GR Sbjct 767 EGLDIGEVDLIVCYDSSASPIRMLQRMGR 795 >sp|Q0CEI2|DCL2_ASPTN Dicer-like protein 2 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=dcl2 PE=3 SV=2 Length=1377 Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 128/510 (25%), Positives = 211/510 (41%), Gaps = 56/510 (11%) Query 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVV-VLVNRVHLVTQ 62 R+YQ E+ +L+ +NII+ + TG+GKT A LET K++ L V L Q Sbjct 17 RNYQTEMFEASLQ-ENIIVAMDTGSGKTHVALLRIMNELETRRPQKLIWFLAPTVALCFQ 75 Query 63 HGEEFRRMLDGRWTVTTLSGD----MGPRAGFGHLARCHDLLICTAELLQMALTSPEEEE 118 + + L + T D +A + + + +++ T +L A+++ Sbjct 76 QHDVITKNLPAVKSRTLTGQDKVELWTEQAIWDAILKDMQVVVSTHAVLADAMSN----G 131 Query 119 HVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQP--LPQVLGLTASPGTGGAS 176 V ++ L++ DE HH + N IM + L + P +P +LGLTASP S Sbjct 132 FVRVSQLGLLIFDEAHHCMRRHPANRIMQDFYHPTLVKQGPDAVPGILGLTASPVVRTNS 191 Query 177 KLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQP-CKQYNLCHRRSQDPFGDLLKK 235 + I +N++ C +P+ +L H+ +P +Q DP + Sbjct 192 QELSMIE------SNMNAIC-KTPRAHRQELLTHTHRPHLQQIWYTPVNIDDPTSGT-RT 243 Query 236 LMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDAL--LI 293 L IH + + + VK + G Q+ N++L + Sbjct 244 LRALIHAWETI---------DLEDDPYVKQLRRSTFDGKALQKALLTRKTYCNESLRRFV 294 Query 294 HDTVRAVDALA--ALQDFYH------REHVTKTQILC----AERRLLALFDDRKNELAHL 341 + L A+ F H RE + + ++ E+ LA F + Sbjct 295 ERSCHIFQELGGWAVDYFIHASIRRLREKIDDSALMLDWDNEEKEYLASFLSNIATIQSD 354 Query 342 ATHGPEN----PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD 397 PE+ PKLE L L S+ S G+IF + R + ++L L L Sbjct 355 PPRRPEDFIPSPKLEALISFLSSTDDSTFS--GLIFAKQRATV-TVLATLLSVHPLTKDR 411 Query 398 IRAQLLIG---AGNSSQ--STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNV 452 R +G GN ++ + Q++ + +F+ G NL+VAT V EEG+DI C+V Sbjct 412 FRCAAFVGWSGGGNRKDLIGELLSMQMQRDTLSEFRSGQKNLIVATDVLEEGIDISACSV 471 Query 453 VVRYGLLTNEISMVQARGRARADQSVYAFV 482 V+ Y N S VQ RGRAR +S +A + Sbjct 472 VICYDKPANVKSFVQRRGRARRKESTFAIL 501 >sp|Q8R418|DICER_MOUSE Endoribonuclease Dicer OS=Mus musculus OX=10090 GN=Dicer1 PE=1 SV=3 Length=1916 Score = 86.3 bits (212), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 90/164 (55%), Gaps = 9/164 (5%) Query 370 GIIFTRTRQSAHSLLLWLQQ--QQGLQTVDIRAQLLIGAG---NSSQSTHMTQ--RDQQE 422 GIIF R +A L +++ +Q + I + + G G N +S M R Q+E Sbjct 444 GIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRSKQMEAEFRKQEE 503 Query 423 VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFV 482 V++KF+ NLL+ATSV EEG+DIP CN+VVR+ L T S VQ++GRARA S Y + Sbjct 504 VLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYVML 563 Query 483 A-TEGSRELKREL-INEALETLMEQAVAAVQKMDQAEYQAKIRD 524 A T+ + + +L +A+E ++ + +A+ A + D Sbjct 564 ADTDKIKSFEEDLKTYKAIEKILRNKCSKSADGAEADVHAGVDD 607 Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 52/176 (30%), Positives = 77/176 (44%), Gaps = 22/176 (13%) Query 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG------AKVVVLVNRV 57 R YQ E++ AL+ N I+ L TG+GKT A + K + G + V LVN Sbjct 45 RKYQVELLEAALD-HNTIVCLNTGSGKTFIAVLLTKELAHQIRGDLNPHAKRTVFLVNSA 103 Query 58 HLVTQHGEEFRRMLD---GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP 114 + V Q R D G ++ ++ + H +LI T + L Sbjct 104 NQVAQQVSAVRTHSDLKVGEYSDLEVNASWTKERWSQEFTK-HQVLIMTCYVALTVL--- 159 Query 115 EEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQP-LPQVLGLTAS 169 + ++ L+ +L+V DECH D Y IM KL + P P++LGLTAS Sbjct 160 -KNGYLSLSDINLLVFDECHLAILDHPYREIM------KLCESCPSCPRILGLTAS 208 >sp|A1D4V5|MPH1_NEOFI ATP-dependent DNA helicase mph1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=mph1 PE=3 SV=1 Length=1111 Score = 85.9 bits (211), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 131/503 (26%), Positives = 213/503 (42%), Gaps = 67/503 (13%) Query 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQH 63 R YQ+ + L N+++ LPTG GKT AA + A+++ + LV Q Sbjct 300 RDYQFNIAQRGL-FHNLLVALPTGLGKTFIAATIMLNWYRWTKSAQIIFVAPTKPLVAQQ 358 Query 64 GEE-FRRMLDGRWTVTTLSGDMGP--RAGFGHLARCHDLLICT-AELLQMALTSPEEEEH 119 F+ R T L+G+ P RA R + T L+ + P+ Sbjct 359 ISACFQVAGIPRSQTTMLTGEAAPGIRAEEWKSKRVFFMTPQTLVNDLKSGIADPKR--- 415 Query 120 VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASK-- 177 L+VVDE H Y ++ L+R +VL LTA+PG+ S Sbjct 416 -----IVLLVVDEAHRATGGYAYVEVVK-----FLKRYNKSFRVLALTATPGSTVESVQA 465 Query 178 -LDG-AINHV-LQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLK 234 +DG I V ++ +LD + ++ Q ++S + LC + F L+ Sbjct 466 VIDGLGIAKVEIRTEQSLDIREYVHARDTEVQTFKNSDEMV----LC----MELFTRTLQ 517 Query 235 KLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEA-AALAGLQEQRVYALHLRRYNDALL- 292 L+DQ+ + L+ +G L++A G R L L+ +A+ Sbjct 518 PLVDQLRN------LNAYWGRDPMALTAFGLTKARQQWMGSDAGRNANLGLKGKVNAIFT 571 Query 293 -IHDTVRAVDALA--ALQDFY----HREHVTKTQILCAERRLLALFDDRKNELAHLA--T 343 + A+D L + FY H + T Q +R + + K + HL T Sbjct 572 VLASLAHAIDLLKYHGITPFYRHLLHFQSNTDGQKGGKYQRQIVQDESFKKLMNHLQPWT 631 Query 344 HGPE---NPKLEMLEKILQRQF------------SSSNSPRGIIFTRTRQSAHSLLLWLQ 388 PE +PKLE L++++ F S ++ R +IF R SA ++ L+ Sbjct 632 KNPEFIGHPKLEYLKQVVLNHFMDRGEGTAANGDQSQSATRIMIFVHFRDSAEEVVRVLK 691 Query 389 QQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIP 448 + + L IR + +G ++ S M Q+ Q ++QKF+ GT N +VATS+ EEGLDI Sbjct 692 RYEPL----IRPHVFVGQSSAKGSEGMDQKTQLSIVQKFKKGTYNTIVATSIGEEGLDIG 747 Query 449 HCNVVVRYGLLTNEISMVQARGR 471 +++V Y + I M+Q GR Sbjct 748 EVDLIVCYDSSASPIRMLQRMGR 770 >sp|Q4WKB5|MPH1_ASPFU ATP-dependent DNA helicase mph1 OS=Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293) OX=330879 GN=mph1 PE=3 SV=1 Length=1101 Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 129/503 (26%), Positives = 211/503 (42%), Gaps = 67/503 (13%) Query 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQH 63 R YQ+ + L N+++ LPTG GKT AA + A+++ + LV Q Sbjct 290 RDYQFNIAQRGL-FHNLLVALPTGLGKTFIAATIMLNWYRWTKSAQIIFVAPTKPLVAQQ 348 Query 64 GEE-FRRMLDGRWTVTTLSGDMGP--RAGFGHLARCHDLLICT-AELLQMALTSPEEEEH 119 F+ R T L+G+ P RA R + T L+ + P+ Sbjct 349 ISACFQVAGIPRSETTMLTGEAAPGIRAEEWKSKRVFFMTPQTLVNDLKSGIADPKR--- 405 Query 120 VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKL- 178 L+VVDE H Y ++ L+R +VL LTA+PG+ S Sbjct 406 -----IVLLVVDEAHRATGGYAYVEVVK-----FLKRYNKSFRVLALTATPGSTVESVQA 455 Query 179 ---DGAINHV-LQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLK 234 D I V ++ +LD + ++ Q ++S + LC + F L+ Sbjct 456 IIDDLGIAKVEIRTEQSLDIREYVHARDTEVQTFQNSDEMV----LC----MELFTRTLQ 507 Query 235 KLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEA-AALAGLQEQRVYALHLRRYNDALL- 292 L+DQ+ + L+ +G L++A G R L L+ +A+ Sbjct 508 PLVDQLRN------LNAYWGRDPMALTAFGLTKARQQWMGSDAGRNANLALKGKVNAIFT 561 Query 293 -IHDTVRAVDALA--ALQDFY----HREHVTKTQILCAERRLLALFDDRKNELAHLA--T 343 + A+D L + FY H + T Q +R + + K + HL T Sbjct 562 VLASLAHAIDLLKYHGITPFYRHLLHFQSNTDGQKGGKYQRQIVQDESFKKLMNHLQPWT 621 Query 344 HGPE---NPKLEMLEKILQRQF------------SSSNSPRGIIFTRTRQSAHSLLLWLQ 388 P+ +PKLE L++++ F S ++ R +IF R SA ++ L+ Sbjct 622 KNPDFIGHPKLEYLKQVVLNHFMDRGEGTAANGDQSQSATRIMIFVHFRDSAEEVVRVLK 681 Query 389 QQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIP 448 + + L IR + +G ++ S M Q+ Q ++QKF+ GT N +VATS+ EEGLDI Sbjct 682 RHEPL----IRPHVFVGQSSAKGSEGMDQKTQLSIVQKFKKGTYNTIVATSIGEEGLDIG 737 Query 449 HCNVVVRYGLLTNEISMVQARGR 471 +++V Y + I M+Q GR Sbjct 738 EVDLIVCYDSSASPIRMLQRMGR 760 >sp|B0XMV6|MPH1_ASPFC ATP-dependent DNA helicase mph1 OS=Aspergillus fumigatus (strain CBS 144.89 / FGSC A1163 / CEA10) OX=451804 GN=mph1 PE=3 SV=1 Length=1101 Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 129/503 (26%), Positives = 211/503 (42%), Gaps = 67/503 (13%) Query 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQH 63 R YQ+ + L N+++ LPTG GKT AA + A+++ + LV Q Sbjct 290 RDYQFNIAQRGL-FHNLLVALPTGLGKTFIAATIMLNWYRWTKSAQIIFVAPTKPLVAQQ 348 Query 64 GEE-FRRMLDGRWTVTTLSGDMGP--RAGFGHLARCHDLLICT-AELLQMALTSPEEEEH 119 F+ R T L+G+ P RA R + T L+ + P+ Sbjct 349 ISACFQVAGIPRSETTMLTGEAAPGIRAEEWKSKRVFFMTPQTLVNDLKSGIADPKR--- 405 Query 120 VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKL- 178 L+VVDE H Y ++ L+R +VL LTA+PG+ S Sbjct 406 -----IVLLVVDEAHRATGGYAYVEVVK-----FLKRYNKSFRVLALTATPGSTVESVQA 455 Query 179 ---DGAINHV-LQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLK 234 D I V ++ +LD + ++ Q ++S + LC + F L+ Sbjct 456 IIDDLGIAKVEIRTEQSLDIREYVHARDTEVQTFQNSDEMV----LC----MELFTRTLQ 507 Query 235 KLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEA-AALAGLQEQRVYALHLRRYNDALL- 292 L+DQ+ + L+ +G L++A G R L L+ +A+ Sbjct 508 PLVDQLRN------LNAYWGRDPMALTAFGLTKARQQWMGSDAGRNANLALKGKVNAIFT 561 Query 293 -IHDTVRAVDALA--ALQDFY----HREHVTKTQILCAERRLLALFDDRKNELAHLA--T 343 + A+D L + FY H + T Q +R + + K + HL T Sbjct 562 VLASLAHAIDLLKYHGITPFYRHLLHFQSNTDGQKGGKYQRQIVQDESFKKLMNHLQPWT 621 Query 344 HGPE---NPKLEMLEKILQRQF------------SSSNSPRGIIFTRTRQSAHSLLLWLQ 388 P+ +PKLE L++++ F S ++ R +IF R SA ++ L+ Sbjct 622 KNPDFIGHPKLEYLKQVVLNHFMDRGEGTAANGDQSQSATRIMIFVHFRDSAEEVVRVLK 681 Query 389 QQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIP 448 + + L IR + +G ++ S M Q+ Q ++QKF+ GT N +VATS+ EEGLDI Sbjct 682 RHEPL----IRPHVFVGQSSAKGSEGMDQKTQLSIVQKFKKGTYNTIVATSIGEEGLDIG 737 Query 449 HCNVVVRYGLLTNEISMVQARGR 471 +++V Y + I M+Q GR Sbjct 738 EVDLIVCYDSSASPIRMLQRMGR 760 >sp|Q5A1A0|MPH1_CANAL ATP-dependent DNA helicase MPH1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=MPH1 PE=3 SV=2 Length=1187 Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 125/554 (23%), Positives = 226/554 (41%), Gaps = 102/554 (18%) Query 1 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV 60 E+R YQ+ ++ A N+++ LPTG GKT A+ V L +K++ + LV Sbjct 135 FEIRDYQYNIVERAFYD-NLLVALPTGLGKTFIASTVMLNFLRWFPISKIIFMAPTRPLV 193 Query 61 TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 Q + + + + D R + + T ++++ L S V Sbjct 194 AQQIKACCSIAGIPSSKVAILLDKT-RRNRAEIWNSRQVFFTTPQVVENDLAS----GVV 248 Query 121 ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG 180 +L+V+DE H + YN ++ + R ++L LTA+P AS ++G Sbjct 249 NPKSIALLVIDEAHRAKGNYSYNNVVKF-----INRFSDSYRILALTATP----ASDVEG 299 Query 181 AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQ------------DP 228 V Q+ NL+ + + H ++ + C+ S+ P Sbjct 300 ----VQQIIDNLNISKVEVRTEQSIDIVRHMKRKTVERKTCYPSSEITECIELLAEGITP 355 Query 229 FGDLLKK--LMDQIH----DHLEMPELSRKFGTQMYEQQVVKLS-----EAAALAGLQEQ 277 + K+ L+D + L+ E+SRK + +K S + + G + Sbjct 356 VLNTAKERGLLDLTDPTRINFLQCMEISRKIVANPTIPEGLKWSNYFILQLLGMVGQCYR 415 Query 278 RVYALHLRRY----NDALLIHDTV----RAVDALAALQDFYHREHVTKTQILCAERRLLA 329 R+ +R + N+ L T ++ + L A DFY + +T Sbjct 416 RLNIYGIRSFQSYFNEKFLEFKTKWNAKKSTNKLNA--DFYFSDPITTLM---------- 463 Query 330 LFDDRKNELAHLATHGPENPKLEMLEKILQRQFSS--SNSPRGIIFTRTRQSAHSLL--- 384 DR EL+ T+G +PK+E L + L F + + R IIFT R+SA ++ Sbjct 464 ---DRVEELSKTLTYG--HPKIEALMEELDDFFKNHETAGSRVIIFTEFRESALEIVQCI 518 Query 385 ----------LWLQQQQGLQTVDIRAQLLI-----------------GAGNSSQSTHMTQ 417 +++ Q + + D+ + ++Q T M+Q Sbjct 519 EKANDNRKPHIFIGQSKEKEKFDVENFGKKKQKGQTKKKKDERPSTRSSSENAQMTGMSQ 578 Query 418 RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA---RA 474 + Q+E+I+KF+ G N+LVATS+ EEGLDI ++++ Y ++ I +Q GR R Sbjct 579 KLQKEIIKKFKKGVFNILVATSIGEEGLDIGEVDLIICYDSTSSPIKNIQRMGRTGRKRD 638 Query 475 DQSVYAFVATEGSR 488 + + F + E S+ Sbjct 639 GKVLMLFSSNEESK 652 >sp|A1CS00|MPH1_ASPCL ATP-dependent DNA helicase mph1 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=mph1 PE=3 SV=1 Length=1119 Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 130/508 (26%), Positives = 209/508 (41%), Gaps = 77/508 (15%) Query 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQH 63 R YQ+ + L N+++ LPTG GKT AA + ++++ + LV+Q Sbjct 307 RDYQFNITQRGL-FHNLLVALPTGLGKTFIAATIMLNWYRWTKSSQIIFVAPTKPLVSQQ 365 Query 64 GEE-FRRMLDGRWTVTTLSGDMGP--RAGFGHLARCHDLLICT-AELLQMALTSPEEEEH 119 F R T L+G+ P RA R + T L+ + P+ Sbjct 366 ISACFGIAGIPRSQTTMLTGEAAPGIRAEEWKAKRVFFMTPQTLINDLKSGIADPKR--- 422 Query 120 VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASK-- 177 L+VVDE H Y ++ ++R +VL LTA+PG+ S Sbjct 423 -----IVLLVVDEAHRATGGYAYVEVVK-----FIKRYNKSFRVLALTATPGSTVESVQA 472 Query 178 -LDG-AINHV-LQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLK 234 +DG I V ++ +LD + +N Q ++S + LC D F L+ Sbjct 473 VIDGLDIAKVEIRTEQSLDIREYVHARNTDVQTFQNSDEMV----LC----MDLFSRTLQ 524 Query 235 KLMDQI--------HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR 286 L+DQ+ D + + FG QQ + LS+A A Y L + Sbjct 525 PLVDQLCSLNAYWGKDPMAL----TPFGLTKARQQWM-LSDAGRNAN------YGLKGKV 573 Query 287 YNDALLIHDTVRAVDALA--ALQDFY----HREHVTKTQILCAERRLLALFDDRKNELAH 340 ++ A+D L + FY H T Q +R + + K + H Sbjct 574 NAIFTVLASLAHAIDLLKYHGITPFYRHLVHFRSNTDGQKGGKYQRQIVQDESFKKLMNH 633 Query 341 LA--THGPE---NPKLEMLEKILQRQFSSSNSPRG------------IIFTRTRQSAHSL 383 L T PE +PKLE L++++ F + G ++F R SA + Sbjct 634 LQPWTKNPEFIGHPKLEYLKQVVLNHFMDAGEGSGADGNHTRSATRIMVFAHFRDSAEEI 693 Query 384 LLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEE 443 + L++ + L IR + +G ++ S M Q+ Q ++QKF+ G N +VATS+ EE Sbjct 694 VRVLKRYEPL----IRPHVFVGQSSAKGSEGMDQKTQLSIVQKFKKGDYNTIVATSIGEE 749 Query 444 GLDIPHCNVVVRYGLLTNEISMVQARGR 471 GLDI +++V Y + I M+Q GR Sbjct 750 GLDIGEVDLIVCYDSSASPIRMLQRMGR 777 >sp|A0MQH0|DICER_CRIGR Endoribonuclease Dicer OS=Cricetulus griseus OX=10029 GN=DICER1 PE=2 SV=3 Length=1917 Score = 83.6 bits (205), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 58/157 (37%), Positives = 89/157 (57%), Gaps = 11/157 (7%) Query 370 GIIFTRTRQSAHSLLLWLQQ--QQGLQTVDIRAQLLIGAG---NSSQSTHMTQ--RDQQE 422 GIIF R +A L +++ +Q + I + + G G N +S M R Q+E Sbjct 444 GIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRSKQMEAEFRKQEE 503 Query 423 VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFV 482 V++KF+ NLL+ATSV EEG+DIP CN+VVR+ L T S VQ++GRARA S Y + Sbjct 504 VLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYVML 563 Query 483 A-TEGSRELKREL-INEALETLMEQAVAAVQKMDQAE 517 A T+ + + +L +A+E ++ + + +D AE Sbjct 564 ADTDKIQSFEEDLKTYKAIEKILRNKCS--KSVDGAE 598 Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 52/176 (30%), Positives = 77/176 (44%), Gaps = 22/176 (13%) Query 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG------AKVVVLVNRV 57 R YQ E++ AL+ N I+ L TG+GKT A + K + G + V LVN Sbjct 45 RKYQVELLEAALD-HNTIVCLNTGSGKTFIAVLLTKELAHQIRGDLNPRAKRTVFLVNSA 103 Query 58 HLVTQHGEEFRRMLD---GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP 114 + V Q R D G ++ ++ + H +LI T + L Sbjct 104 NQVAQQVSAVRTHSDLKVGEYSNLEVNASWTKERWSQEFTK-HQVLIMTCYVALNVL--- 159 Query 115 EEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQP-LPQVLGLTAS 169 + ++ L+ +L+V DECH D Y IM KL + P P++LGLTAS Sbjct 160 -KNGYLSLSDINLLVFDECHLAILDHPYREIM------KLCESCPSCPRILGLTAS 208 >sp|Q6TUI4|DICER_BOVIN Endoribonuclease Dicer OS=Bos taurus OX=9913 GN=DICER1 PE=2 SV=3 Length=1923 Score = 83.6 bits (205), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 55/164 (34%), Positives = 90/164 (55%), Gaps = 9/164 (5%) Query 370 GIIFTRTRQSAHSLLLWLQQ--QQGLQTVDIRAQLLIGAG---NSSQSTHMTQ--RDQQE 422 GIIF R +A L +++ +Q + I + + G G N ++ M R Q+E Sbjct 444 GIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEFRKQEE 503 Query 423 VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFV 482 V++KF+ NLL+ATS+ EEG+DIP CN+VVR+ L T S VQ++GRARA S Y + Sbjct 504 VLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYVML 563 Query 483 A-TEGSRELKREL-INEALETLMEQAVAAVQKMDQAEYQAKIRD 524 A T+ + + +L +A+E ++ + +A+ + + D Sbjct 564 ADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGEADTEPVVDD 607 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 54/176 (31%), Positives = 77/176 (44%), Gaps = 22/176 (13%) Query 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAK------RHLETVDGAKVVVLVNRV 57 R YQ E++ AL+ N I+ L TG+GKT A + K R +G + V LVN Sbjct 45 RKYQVELLEAALD-HNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNRNGKRTVFLVNSA 103 Query 58 HLVTQHGEEFRRMLD---GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP 114 + V Q R D G ++ +S + H +LI T + L Sbjct 104 NQVAQQVSAVRTHSDLKVGEYSNLEVSASWTKEKWNQEFTK-HQVLIMTCYVALNVL--- 159 Query 115 EEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQP-LPQVLGLTAS 169 + ++ L+ +L+V DECH D Y IM KL P P++LGLTAS Sbjct 160 -KNGYLSLSDINLLVFDECHLAILDHPYREIM------KLCENCPSCPRILGLTAS 208 >sp|Q8LMR2|DCL1_ORYSJ Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp. japonica OX=39947 GN=DCL1 PE=3 SV=1 Length=1883 Score = 83.2 bits (204), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 62/165 (38%), Positives = 88/165 (53%), Gaps = 8/165 (5%) Query 345 GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI 404 G P+++ L KIL + + + R IIF +A L L + L IR LI Sbjct 620 GKVTPRVQALIKILLK-YQHTEDFRAIIFVERVVTALVLPKVLAELPSLSF--IRCASLI 676 Query 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 G N+ + M Q+ I KF+DG + LLVATSVAEEGLDI CNVV+R+ L ++ Sbjct 677 GHNNNQE---MRACQMQDTISKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLA 733 Query 465 MVQARGRARADQSVYAFVATEGSRELKRELIN--EALETLMEQAV 507 +Q+RGRAR S Y + G+ + L N + ETL ++A+ Sbjct 734 YIQSRGRARKPGSDYILMLERGNISHETFLRNARNSEETLRKEAM 778 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 59/218 (27%), Positives = 94/218 (43%), Gaps = 54/218 (25%) Query 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAK----RHLETVDGAKVVVLVNRVHL 59 R YQ EV+ A + +N I +L TGAGKT A + K + L+ V LV +V L Sbjct 268 RQYQLEVLEQA-KSRNTIAFLETGAGKTLIAVLLIKSVCDKMLKENKKMLAVFLVPKVPL 326 Query 60 VTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 V Q +L+ TA++L L Sbjct 327 VYQ------------------------------------VLVMTAQILLNIL----RHSI 346 Query 120 VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGT--GGASK 177 +++ L+++DECHH K Y+++MS++ + + P V G+TASP G S+ Sbjct 347 IKMDAIHLLILDECHHAVKKHPYSLVMSEFYHTTPKEKR--PAVFGMTASPVNLKGVTSQ 404 Query 178 LDGAINHVLQLCANLDT-WCIMSPQNCCPQLQEHSQQP 214 D AI + L + LD+ C + + +L++H P Sbjct 405 EDCAIK-IRNLESKLDSVVCTIKDRK---ELEKHVPMP 438 >sp|Q7SCC1|DCL2_NEUCR Dicer-like protein 2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=dcl-2 PE=2 SV=4 Length=1534 Score = 83.2 bits (204), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 112/403 (28%), Positives = 171/403 (42%), Gaps = 43/403 (11%) Query 120 VELTVFSLIVVDECHH-THKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKL 178 V L SLIV+DE H+ + + ++ YL K + P+P +LGLTASP Sbjct 181 VRLDSLSLIVIDEAHNCSGSHPIARLMTEAYLPAK-KAGLPVPSILGLTASPLKSNN--- 236 Query 179 DGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPF-GDLLKKLM 237 + + +L LD C +P +L H +P DP DL+ + + Sbjct 237 ---LADIEKLEQVLDAVC-RTPTIHREELLAHVNRPEMLVVSYGDSGTDPTPTDLMTRFL 292 Query 238 DQIH--DHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR-YNDALLIH 294 + H D + P++ Q E+ KL + Q+ LR YN ALL+ Sbjct 293 EAYHRLDISKDPDV-LLLKAQRTERAREKLRQMITKKDTLAQK----ELRGVYNRALLVR 347 Query 295 DTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPE------- 347 R + AA D+Y V+ +L R R A + P Sbjct 348 ---REIGPWAA--DYYLTRTVS--HMLAELERGEPPAQHRYIGEALRSIPIPAISKEPIQ 400 Query 348 -NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA 406 +PK++ L K+L S P GI+F + R S++ + L R +IG Sbjct 401 LSPKVQTLLKVLA---SHQQDPVGIVFVKERVMV-SIVTHIISTHPLTKDRYRTASMIGT 456 Query 407 ----GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE 462 G + MT+++ ++ F+ G NLLVATSV EEG+D+P CN+V+ + +N Sbjct 457 ASVPGKARNHMDMTKKEDMTSLEGFRLGRFNLLVATSVLEEGIDVPICNLVICFDEPSNI 516 Query 463 ISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQ 505 S +Q RGRAR S + S E + N LE LM++ Sbjct 517 KSFIQRRGRAREVSSTLYLMVQNASSESATDWHN--LERLMKE 557 >sp|Q25BN1|DICER_CHICK Endoribonuclease Dicer OS=Gallus gallus OX=9031 GN=DICER1 PE=2 SV=3 Length=1921 Score = 82.4 bits (202), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 55/164 (34%), Positives = 89/164 (54%), Gaps = 9/164 (5%) Query 370 GIIFTRTRQSAHSLLLWLQQ--QQGLQTVDIRAQLLIGAG---NSSQSTHMTQ--RDQQE 422 GIIF R +A L +++ +Q + I + + G G N ++ M R Q+E Sbjct 444 GIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEVEFRKQEE 503 Query 423 VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFV 482 V++KF+ NLL+ATS+ EEG+DIP CN+VVR+ L T S VQ++GRARA S Y + Sbjct 504 VLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYIML 563 Query 483 A-TEGSRELKREL-INEALETLMEQAVAAVQKMDQAEYQAKIRD 524 A T+ + + +L +A+E ++ + + E + + D Sbjct 564 ADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTSETETEPIVDD 607 Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/176 (30%), Positives = 79/176 (45%), Gaps = 22/176 (13%) Query 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAK------RHLETVDGAKVVVLVNRV 57 R YQ E++ AL+ N I+ L TG+GKT A + K R +G + V LVN Sbjct 45 RKYQVELLEAALD-HNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNKNGKRTVFLVNSA 103 Query 58 HLVTQHGEEFRRMLD---GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP 114 + V Q R D G ++ ++ ++ H +L+ T + L Sbjct 104 NQVAQQVSAVRTHSDLKVGEYSSLEVTESWTKEKWSQEFSK-HQVLVMTCHVALTVL--- 159 Query 115 EEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQP-LPQVLGLTAS 169 E++ L+ +L+V DECH +D Y IM K+ P P++LGLTAS Sbjct 160 -RNEYLSLSNINLLVFDECHLAIQDHPYREIM------KICEDYPSCPRILGLTAS 208 >sp|P84634|DCL4_ARATH Dicer-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=DCL4 PE=1 SV=2 Length=1702 Score = 82.4 bits (202), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 46/121 (38%), Positives = 71/121 (59%), Gaps = 4/121 (3%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 + IIF +A +L L + L++ ++ L+G + +S M++R + ++++FQ Sbjct 490 KCIIFVNRIVTARTLSCILNNLELLRS--WKSDFLVGLSSGLKS--MSRRSMETILKRFQ 545 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFVATEGSR 488 LNLLVAT V EEGLDI C +V+RY L S +Q+RGRAR QS YAF+ G+ Sbjct 546 SKELNLLVATKVGEEGLDIQTCCLVIRYDLPETVTSFIQSRGRARMPQSEYAFLVDSGNE 605 Query 489 E 489 + Sbjct 606 K 606 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 50/189 (26%), Positives = 83/189 (44%), Gaps = 34/189 (18%) Query 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKR--HLETVDGAKV-VVLVNRVHLV 60 R YQ E+ A E +N+I++L TG GKT A + HL V + L V LV Sbjct 125 RRYQVELCKKATE-ENVIVYLGTGCGKTHIAVMLIYELGHLVLSPKKSVCIFLAPTVALV 183 Query 61 TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCH----------DLLICTAELLQMA 110 Q + +++ + G + + H ++L+ T ++L Sbjct 184 EQQA---------KVIADSVNFKVAIHCGGKRIVKSHSEWEREIAANEVLVMTPQILLHN 234 Query 111 LTSPEEEEHVELTVFSLIVVDECHHTHKDT--VYNVIMSQYLELK-LQRAQPLPQVLGLT 167 L + +++ SL++ DECHH + + Y IM + + + LQR P++ G+T Sbjct 235 L----QHCFIKMECISLLIFDECHHAQQQSNHPYAEIMKVFYKSESLQR----PRIFGMT 286 Query 168 ASPGTGGAS 176 ASP G S Sbjct 287 ASPVVGKGS 295 >sp|Q9SP32|DCL1_ARATH Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana OX=3702 GN=DCL1 PE=1 SV=2 Length=1909 Score = 82.4 bits (202), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 60/165 (36%), Positives = 86/165 (52%), Gaps = 8/165 (5%) Query 345 GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI 404 G PK++ L K+L + + + R I+F +A L + L IR +I Sbjct 643 GKVTPKVQSLIKLLLK-YQHTADFRAIVFVERVVAALVLPKVFAELPSLSF--IRCASMI 699 Query 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 G NS + M Q+ I KF+DG + LLVATSVAEEGLDI CNVV+R+ L ++ Sbjct 700 GHNNSQE---MKSSQMQDTISKFRDGHVTLLVATSVAEEGLDIRQCNVVMRFDLAKTVLA 756 Query 465 MVQARGRARADQSVYAFVATEGSRELKRELIN--EALETLMEQAV 507 +Q+RGRAR S Y + G+ L N + ETL ++A+ Sbjct 757 YIQSRGRARKPGSDYILMVERGNVSHAAFLRNARNSEETLRKEAI 801 Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 67/226 (30%), Positives = 106/226 (47%), Gaps = 28/226 (12%) Query 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKR-HLETVDGAK---VVVLVNRVHL 59 R YQ +V+ A + KN I +L TGAGKT A + K H + + + V LV +V L Sbjct 250 RRYQLDVLEQA-KAKNTIAFLETGAGKTLIAILLIKSVHKDLMSQNRKMLSVFLVPKVPL 308 Query 60 VTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLAR------CHDLLICTAELLQMALTS 113 V Q E R + V G+MG F R +L+ TA++L L Sbjct 309 VYQQAEVIRNQT--CFQVGHYCGEMG--QDFWDSRRWQREFESKQVLVMTAQILLNIL-- 362 Query 114 PEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGT- 172 + + L+++DECHH K Y+++MS++ + + P + G+TASP Sbjct 363 --RHSIIRMETIDLLILDECHHAVKKHPYSLVMSEFYHTTPKDKR--PAIFGMTASPVNL 418 Query 173 -GGASKLDGAINHVLQLCANLD-TWCIMSPQNCCPQLQEHSQQPCK 216 G +S++D AI + L LD T C + + +L++H P + Sbjct 419 KGVSSQVDCAIK-IRNLETKLDSTVCTIKDRK---ELEKHVPMPSE 460 >sp|Q9UPY3|DICER_HUMAN Endoribonuclease Dicer OS=Homo sapiens OX=9606 GN=DICER1 PE=1 SV=3 Length=1922 Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 53/143 (37%), Positives = 83/143 (58%), Gaps = 9/143 (6%) Query 370 GIIFTRTRQSAHSLLLWLQQ--QQGLQTVDIRAQLLIGAG---NSSQSTHMTQ--RDQQE 422 GIIF R +A L +++ +Q + I + + G G N ++ M R Q+E Sbjct 444 GIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEFRKQEE 503 Query 423 VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFV 482 V++KF+ NLL+ATS+ EEG+DIP CN+VVR+ L T S VQ++GRARA S Y + Sbjct 504 VLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYIML 563 Query 483 A-TEGSRELKREL-INEALETLM 503 A T+ + + +L +A+E ++ Sbjct 564 ADTDKIKSFEEDLKTYKAIEKIL 586 Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 53/176 (30%), Positives = 78/176 (44%), Gaps = 22/176 (13%) Query 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAK------RHLETVDGAKVVVLVNRV 57 R YQ E++ AL+ N I+ L TG+GKT A + K R + +G + V LVN Sbjct 45 RKYQVELLEAALD-HNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFSRNGKRTVFLVNSA 103 Query 58 HLVTQHGEEFRRMLD---GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP 114 + V Q R D G ++ ++ + H +LI T + L Sbjct 104 NQVAQQVSAVRTHSDLKVGEYSNLEVNASWTKERWNQEFTK-HQVLIMTCYVALNVL--- 159 Query 115 EEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQP-LPQVLGLTAS 169 + ++ L+ +L+V DECH D Y IM KL P P++LGLTAS Sbjct 160 -KNGYLSLSDINLLVFDECHLAILDHPYREIM------KLCENCPSCPRILGLTAS 208 >sp|A2Q8R2|MPH1_ASPNC ATP-dependent DNA helicase mph1 OS=Aspergillus niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) OX=425011 GN=mph1 PE=3 SV=2 Length=1124 Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 131/509 (26%), Positives = 213/509 (42%), Gaps = 79/509 (16%) Query 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQH 63 R YQ+ + L N+++ LPTG GKT AA + A++V + LV Q Sbjct 322 RDYQFNIAQKGL-FHNLLVALPTGLGKTFIAATIMLNWFRWTKDAQIVFVAPTKPLVAQQ 380 Query 64 GEE-FRRMLDGRWTVTTLSGDMGP--RAGFGHLARCHDLLICT-AELLQMALTSPEEEEH 119 F R T L+G+ P RA R + T L+ + P+ Sbjct 381 ISACFEVAGIPRSQTTMLTGEAAPGIRAEEWKAKRVFFMTPQTLINDLKTGIADPKR--- 437 Query 120 VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASK-- 177 L+VVDE H Y V + ++L Q + VL LTA+PG+ S Sbjct 438 -----IVLVVVDEAHRATGGYAY-VEVVKFLRRYNQSFR----VLALTATPGSTVESVQA 487 Query 178 -LDG-AINHV-LQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLK 234 +DG I+ V ++ +LD + ++ Q ++S++ LC DL+ Sbjct 488 VIDGLDISRVEIRTEQSLDIREYVHSKDTDVQTFQNSEEMV----LCM--------DLMS 535 Query 235 KLMDQIHDHLEM--------PELSRKFG-TQMYEQQVVKLSEAAALAGLQEQRVYALHLR 285 K + + D L P +G T+ +Q ++ S A G++ + + Sbjct 536 KALQPLLDQLRSTNAYWGRDPMGLTAYGLTKARQQWMLSDSGRNAHFGVKAKMNAIFTVL 595 Query 286 RYNDALLIHDTVRAVDALA--ALQDFY----HREHVTKTQILCAERRLLALFDDRKNELA 339 A L H +D L + FY H + T+ Q +R + + K + Sbjct 596 ----ASLAH----GIDLLKYHGITPFYRHLLHFQSNTEGQKGGKYQRQVVQDESYKKLMN 647 Query 340 HLA--THGPE---NPKLEMLEKILQRQFSSSNSPRG------------IIFTRTRQSAHS 382 HL T PE +PKLE L++++ F + G +IF R SA Sbjct 648 HLQPWTKNPEFIGHPKLEYLKQVVLNHFMDAGEGSGADENKDQPATRVMIFVHFRDSAEE 707 Query 383 LLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAE 442 + L++ + + IR + +G ++ S M Q+ Q +++QKF+ GT N +VATS+ E Sbjct 708 VTRVLKRYEPM----IRPHVFVGQSSAKGSEGMGQKTQLDIVQKFKKGTYNTIVATSIGE 763 Query 443 EGLDIPHCNVVVRYGLLTNEISMVQARGR 471 EGLDI +++V Y + I M+Q GR Sbjct 764 EGLDIGEVDLIVCYDSSASPIRMLQRMGR 792 >sp|Q2HG76|MPH1_CHAGB ATP-dependent DNA helicase MPH1 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=MPH1 PE=3 SV=1 Length=1134 Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 58/161 (36%), Positives = 86/161 (53%), Gaps = 17/161 (11%) Query 317 KTQILCAE--RRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQF----SSSNSPRG 370 K Q+L E +R++AL + R + H PKL L + L F +SN+ R Sbjct 500 KRQLLADESFQRMMALIE-RWMRMEEFNGH----PKLTYLCETLVNHFIDAGENSNT-RA 553 Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 I+F+ R SA ++ L Q IRA + +G +S +S M Q+ Q E I+KF++G Sbjct 554 IVFSEYRDSAEEIVRLLNNQPL-----IRATVFVGQADSKRSEGMKQKQQIETIEKFKNG 608 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 N+LVATS+ EEGLDI +++V Y + I M+Q GR Sbjct 609 GFNVLVATSIGEEGLDIGQVDLIVCYDASASPIRMLQRMGR 649 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 46/173 (27%), Positives = 77/173 (45%), Gaps = 16/173 (9%) Query 3 LRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ 62 +R YQ+ ++ L N ++ LPTG GKT AA + + +K+V + L +Q Sbjct 187 IRDYQFSIVKNGL-FHNTLVALPTGLGKTFIAATIMLNYFRWTKRSKIVFVAPTKPLASQ 245 Query 63 HGEEFRRMLD-GRWTVTTLSGDMGP--RAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 + + R T L+G+ P R G R L T + L L+ + + Sbjct 246 QVQACLGIAGIPRSQATLLTGETPPVLRQGEWESKR---LFFMTPQTLMNDLS----KGY 298 Query 120 VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGT 172 + L+VVDE H D Y V + ++ ++R ++L LTA+PG+ Sbjct 299 ADPKSIVLLVVDEAHRATGDYAY-VKVVEF----IRRFSKSIRILALTATPGS 346 >sp|Q6TV19|DICER_DANRE Endoribonuclease Dicer OS=Danio rerio OX=7955 GN=dicer1 PE=2 SV=2 Length=1865 Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 54/164 (33%), Positives = 89/164 (54%), Gaps = 9/164 (5%) Query 370 GIIFTRTRQSAHSLLLWLQQ--QQGLQTVDIRAQLLIG---AGNSSQSTHMTQ--RDQQE 422 GIIF R +A L +++ +Q + I + + G N ++ M R Q+E Sbjct 430 GIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHSIGKNQPRNKQMEVEFRKQEE 489 Query 423 VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFV 482 V++KF+ NLL+ATS+ EEG+DIP CN+VVR+ L T S VQ++GRARA S Y + Sbjct 490 VLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPVSNYIML 549 Query 483 A-TEGSRELKREL-INEALETLMEQAVAAVQKMDQAEYQAKIRD 524 A +E ++ + +L +A+E ++ + + + E + D Sbjct 550 ADSERTKTFQEDLKTYKAIEKILRNKCSKSAECNDFELEPVTDD 593 Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 55/185 (30%), Positives = 78/185 (42%), Gaps = 24/185 (13%) Query 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKR---HLETVDGAKVVVLVNRVHLV 60 R YQ E++ ALE N I+ L TG+GKT A + K + +G + V LVN V Sbjct 35 RKYQVELLEAALE-HNTIVCLNTGSGKTFIAVLLIKELSHQIRGENGKRTVFLVNAASSV 93 Query 61 TQHGEEFRRMLD---GRWTVTTLSGDMG--PRAGFGHLARCHDLLICTAELLQMALTSPE 115 Q R D G + +S DM P + + +L+ T + L Sbjct 94 AQQASTVRTHSDLQVGDY----MSEDMTSWPEEMWNREMIENQVLVMTCHIFLHVL---- 145 Query 116 EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQP-LPQVLGLTASPGTGG 174 + + L+ +L+V DECH Y IM K+ P P++LGLTAS G Sbjct 146 KNGVLPLSKINLLVFDECHLAITGHPYREIM------KICEGCPSCPRILGLTASILNGK 199 Query 175 ASKLD 179 D Sbjct 200 CDPCD 204 >sp|A7LFZ6|DCL4_ORYSJ Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp. japonica OX=39947 GN=DCL4 PE=2 SV=1 Length=1657 Score = 79.7 bits (195), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 75/263 (29%), Positives = 118/263 (45%), Gaps = 30/263 (11%) Query 256 QMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHV 315 +++E + L E + LQ R + L D L R VD + F H Sbjct 317 RLHENIIFCLQELGSFGALQAARTF---LSFDGDKL----DRREVDLNGSTSSFAHHYLN 369 Query 316 TKTQILCAER---RLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGII 372 T IL + FD K E + K +L +L R + + + I+ Sbjct 370 GATSILSRNKTDGSHAGSFDLEKLEEPFFSN------KFSVLINVLSR-YGLQENMKCIV 422 Query 373 FTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTL 432 F + A ++ LQ + L+ + + L+G S S +M++ ++Q+F G + Sbjct 423 FVKRITVARAISNILQNLKCLEF--WKCEFLVGC--HSGSKNMSRNKMDAIVQRFSSGEV 478 Query 433 NLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFVATEGSRELKR 492 NLLVATSV EEGLDI C +VVR+ L S +Q+RGRAR +S Y + L+R Sbjct 479 NLLVATSVGEEGLDIQTCCLVVRFDLPETVASFIQSRGRARMTKSKYVVL-------LER 531 Query 493 ELINEALETLMEQAVAAVQKMDQ 515 E N++ E L+ +A M++ Sbjct 532 E--NQSHEKLLNGYIAGESIMNE 552 Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 49/187 (26%), Positives = 79/187 (42%), Gaps = 35/187 (19%) Query 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKR--HLETVDGAKV-VVLVNRVHLV 60 R YQ ++ A+E +NII++L TG GKT A + HL +V + L + LV Sbjct 31 RKYQLDLCKRAVE-ENIIVYLGTGCGKTHIAVLLIYELGHLIRKPSREVCIFLAPTIPLV 89 Query 61 TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHD------------LLICTAELLQ 108 Q V S D + +G+ D +L+ T ++L Sbjct 90 RQQA-----------VVIASSTDFKVQCYYGNGKNSRDHQEWENDMREFEVLVMTPQILL 138 Query 109 MALTSPEEEEHVELTVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGL 166 +L +++ +L+++DECHH K Y IM ++ + P+V G+ Sbjct 139 QSL----RHCFIKMNSIALLILDECHHAQPQKRHPYAQIMKEF--YNSNSVEKFPRVFGM 192 Query 167 TASPGTG 173 TASP G Sbjct 193 TASPIIG 199 >sp|Q9HE09|MFH2_SCHPO Putative ATP-dependent DNA helicase fml2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=fml2 PE=3 SV=1 Length=783 Score = 79.0 bits (193), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 48/138 (35%), Positives = 75/138 (54%), Gaps = 8/138 (6%) Query 349 PKLEMLEKILQRQFSSSN----SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI 404 PK+ L ++L+ F ++ + R +IFT R +A + L + + +RA L I Sbjct 449 PKMNHLLELLKEHFKDTSEGYQNQRVMIFTEFRNTAEYITTTLLAIRPM----VRASLFI 504 Query 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 G NS+ ST M Q Q+E I +F+ G +N LVATS+ EEGLDI ++++ Y ++ I Sbjct 505 GQANSAYSTGMNQMQQKETIDQFRAGVINTLVATSIGEEGLDIGDTDMIICYDASSSPIR 564 Query 465 MVQARGRARADQSVYAFV 482 +Q GR +S FV Sbjct 565 TIQRMGRTGRKKSGKVFV 582 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 53/179 (30%), Positives = 81/179 (45%), Gaps = 18/179 (10%) Query 2 ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVT 61 + R+YQ E AL N+++ LPTG GKT AA V + +K++ L L+ Sbjct 110 QYRNYQKEFCEQAL-FHNLLLALPTGLGKTFIAAVVMLNYFRWFPESKIIFLAPTKPLLL 168 Query 62 QHGEEFRRMLDGRWTVTT-LSGDMGP-RAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 Q + T L+G++ P R F + + + T + LQ L +EH Sbjct 169 QQRVACSNVAGMSPGATAELNGEVSPDRRLFEYNTK--RVFFMTPQTLQNDL-----KEH 221 Query 120 VELTVFSLI--VVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGAS 176 + L S+I + DE H + Y +M L R+ +VLGLTA+PG+ AS Sbjct 222 L-LDAKSIICLIFDEAHRATGNHSYAQVMRAVL-----RSNSHFRVLGLTATPGSSTAS 274 >sp|B3DLA6|DICER_XENTR Endoribonuclease Dicer OS=Xenopus tropicalis OX=8364 GN=dicer1 PE=2 SV=2 Length=1893 Score = 79.3 bits (194), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 48/121 (40%), Positives = 71/121 (59%), Gaps = 7/121 (6%) Query 370 GIIFTRTRQSAHSLLLWLQQ--QQGLQTVDIRAQLLIGAG---NSSQSTHMTQ--RDQQE 422 GIIF R +A L +++ +Q + I + + G G N ++ M R Q+E Sbjct 435 GIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEVEFRKQEE 494 Query 423 VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFV 482 V++KF+ NLL+ATS+ EEG+DIP CN+VVR+ L + S VQ++GRARA S Y + Sbjct 495 VLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPSEYRSYVQSKGRARAPISNYIML 554 Query 483 A 483 A Sbjct 555 A 555 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 53/185 (29%), Positives = 79/185 (43%), Gaps = 20/185 (11%) Query 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG------AKVVVLVNRV 57 R YQ E++ AL+ N I+ L +G+GKT A ++K + G + V LVN Sbjct 35 RKYQVELLEAALD-HNTIVCLNSGSGKTFIAVLLSKELSYQIRGDFSKNTKRTVFLVNSE 93 Query 58 HLVTQHGEEFRRMLD---GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP 114 V+Q R D G ++ + + H +L+ T + L S Sbjct 94 KQVSQQVSAVRTHTDLKVGEYSDQEKTQCWAKERWYLEF-ETHQVLVMTCHIFLNVLKS- 151 Query 115 EEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGG 174 +V L+ +L+V DECH +D Y IM + QP P++LGLTAS G Sbjct 152 ---GNVSLSNINLLVFDECHLAIQDHPYREIMKI-----CESCQPCPRILGLTASILNGK 203 Query 175 ASKLD 179 D Sbjct 204 CDPRD 208 >sp|Q7SDF3|MPH1_NEUCR ATP-dependent DNA helicase mph1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=mph1 PE=3 SV=1 Length=1168 Score = 79.0 bits (193), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 49/127 (39%), Positives = 72/127 (57%), Gaps = 10/127 (8%) Query 349 PKLEMLEKILQRQF----SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI 404 PKLE L + L F SN+ R I+F+ R SA ++ L +Q I+A + + Sbjct 497 PKLEYLCETLVNHFMDAGEGSNT-RAIVFSEYRDSAEEIVRILNKQPL-----IKATVFV 550 Query 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 G +S +S M Q+ Q E I+KF++G N+LVATS+ EEGLDI +++V Y + I Sbjct 551 GQADSKRSEGMKQKQQIETIEKFKNGAHNVLVATSIGEEGLDIGQVDLIVCYDASASPIR 610 Query 465 MVQARGR 471 M+Q GR Sbjct 611 MLQRMGR 617 Score = 43.5 bits (101), Expect = 0.008, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 75/171 (44%), Gaps = 12/171 (7%) Query 3 LRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ 62 +R YQ+ ++ L N ++ LPTG GKT AA + ++ AK V + L +Q Sbjct 155 IRDYQFSIVKNGL-FNNTLVALPTGLGKTFIAATIMLNYIRWTKTAKAVFVAPTKPLASQ 213 Query 63 HGEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVE 121 + + R T L+G+ P A L T + L L+ + + + Sbjct 214 QVQACLSIAGIPRSQATLLTGETPPVLREDEWA-TKRLFFMTPQTLMNDLS----KGYAD 268 Query 122 LTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGT 172 L+V+DE H D Y V + ++ L+R ++L LTA+PG+ Sbjct 269 PKSIVLLVIDEAHRATGDYAY-VKVVEF----LRRFSKSFRILALTATPGS 314 >sp|Q8BGE5|FANCM_MOUSE Fanconi anemia group M protein homolog OS=Mus musculus OX=10090 GN=Fancm PE=1 SV=3 Length=2021 Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 124/540 (23%), Positives = 213/540 (39%), Gaps = 91/540 (17%) Query 3 LRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ 62 +R YQ ++ AL N ++ LPTG GKT AA V KVV + LVTQ Sbjct 79 VRDYQLDISRSALFC-NTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVVFMAPTKPLVTQ 137 Query 63 HGEE-FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVE 121 E F M + + ++G + +L T +++ LT V Sbjct 138 QMEACFHVMGIPQSHMAEMTGSTQA-VNRKEIWSSRRVLFLTPQVMVNDLT----RGAVP 192 Query 122 LTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGA 181 T +VVDE H + Y ++ + ++ ++L L+A+PG+ Sbjct 193 ATHVKCLVVDEAHKALGNYAYCQVVRELVKYTTHF-----RILALSATPGSD-------- 239 Query 182 INHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQD---PFGDLLKKLMD 238 I V Q+ NL I P + +S + RR + P G+ L + Sbjct 240 IKAVQQVITNLLIGKIELRSEESPDILPYSHE---------RRVEKLVVPLGEELGAIQK 290 Query 239 Q------------IHDHL----EMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRV--- 279 IH ++ ++P L+ K+ + Q K + + + G+Q+ + Sbjct 291 TYIQILETFASSLIHRNVLMKRDIPNLT-KYQIILARDQFRK-NPSPNIVGIQQGIIEGE 348 Query 280 YALHLRRYNDALLIHDT-------------------VRAVDALAALQDFYHREHVTKTQI 320 +AL + Y+ L+ RA + L+ +DF ++ Sbjct 349 FALCISLYHGYELLQQMGMRSLYFFLSGIMDGTKGMTRARNELSRNEDFMKLYTHLQSAF 408 Query 321 LCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNS----------PRG 370 A + F E + +H PKL+ LE+++ F S N+ R Sbjct 409 APASTSDASAFQRGNKEKKFVYSH----PKLKKLEEVILEHFKSWNAKATTEKKCHESRV 464 Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 +IF+ R S + L Q + + IR +G + + TQ++Q +V+++F+DG Sbjct 465 MIFSSFRDSVEEIAEMLLQHRPV----IRVMTFVGHASGKNTKGFTQKEQLQVVRQFRDG 520 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRE 489 N LV+T V EEGLDI ++++ + + I ++Q GR R Q + EG E Sbjct 521 GYNTLVSTCVGEEGLDIGEVDLIICFDAQKSPIRLIQRMGRTGRKRQGRIVVILAEGREE 580 >sp|Q3EBC8|DCL2_ARATH Endoribonuclease Dicer homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At3g03300 PE=1 SV=2 Length=1388 Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 34/81 (42%), Positives = 54/81 (67%), Gaps = 0/81 (0%) Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465 AGN+S + T++ Q E+++ F+ G +N++VATS+ EEGLD+ CN+V+R+ +N S Sbjct 423 AGNNSGLQNQTRKKQNEIVEDFRRGLVNIIVATSILEEGLDVQSCNLVIRFDPASNICSF 482 Query 466 VQARGRARADQSVYAFVATEG 486 +Q+RGRAR S Y + G Sbjct 483 IQSRGRARMQNSDYLMMVESG 503 Score = 63.5 bits (153), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 89/189 (47%), Gaps = 23/189 (12%) Query 4 RSYQWEVIMPALEGKNIIIWLPTGAGKT-------RAAAYVAKRHLETVDGAKVVVLVNR 56 RSYQ E + A++ +N I++L TG+GKT R+ AY+ ++ V LV + Sbjct 25 RSYQVEALEKAIK-QNTIVFLETGSGKTLIAIMLLRSYAYLFRKP----SPCFCVFLVPQ 79 Query 57 VHLVTQHGEEFRRMLDGRWTVTTLSGDMG----PRAGFGHLARCHDLLICTAELLQMALT 112 V LVTQ E + D + V GDMG + + +++L+ T +L AL Sbjct 80 VVLVTQQAEALKMHTDLK--VGMYWGDMGVDFWDSSTWKQEVDKYEVLVMTPAILLDAL- 136 Query 113 SPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQP-LPQVLGLTASPG 171 + L++ +++VDECHH Y IM ++ +L +P++ G+TAS Sbjct 137 ---RHSFLSLSMIKVLIVDECHHAGGKHPYACIMREFYHKELNSGTSNVPRIFGMTASLV 193 Query 172 TGGASKLDG 180 LD Sbjct 194 KTKGENLDS 202 >sp|Q1DY43|MPH1_COCIM ATP-dependent DNA helicase MPH1 OS=Coccidioides immitis (strain RS) OX=246410 GN=MPH1 PE=3 SV=1 Length=1110 Score = 75.5 bits (184), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 47/136 (35%), Positives = 72/136 (53%), Gaps = 18/136 (13%) Query 349 PKLEMLEKILQRQF-------------SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQT 395 PKLE L + + F S SN+ R +IF+ R SA ++ L++ Q Sbjct 666 PKLEYLRRAILNHFLDAGGKNGGDSEGSDSNT-RVMIFSHFRDSAEEIVRVLRKHQPF-- 722 Query 396 VDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVR 455 +R + +G N+ S M Q+ Q EV+ KF+ GT N +VATS+ EEGLDI ++++ Sbjct 723 --VRPHVFVGQANAKGSEGMDQKTQLEVVGKFKTGTYNTIVATSIGEEGLDIGEVDLIIC 780 Query 456 YGLLTNEISMVQARGR 471 Y ++ I M+Q GR Sbjct 781 YDGHSSPIRMLQRMGR 796 Score = 38.9 bits (89), Expect = 0.17, Method: Compositional matrix adjust. Identities = 51/175 (29%), Positives = 72/175 (41%), Gaps = 24/175 (14%) Query 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQH 63 R YQ+ + AL N+++ LPTG GKT AA V A++V + LV+Q Sbjct 325 REYQFNIAHRAL-FHNLLVALPTGLGKTFIAATVMLNWFHWTKDAQIVFVAPTKPLVSQQ 383 Query 64 GEE-FRRMLDGRWTVTTLSGDMGP--RAGFGHLARCHDLLICTAEL----LQMALTSPEE 116 + F R T L+G+ P RA R + T + L+ + P+ Sbjct 384 VDACFHIAGIPRSQTTLLTGNTPPGVRA---EEWRSKRVFFMTPQTIMNDLKTGIADPKR 440 Query 117 EEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPG 171 L+VVDE H Y I+ LQR +VL LTA+PG Sbjct 441 --------IVLLVVDEAHRATGAYAYVEIVK-----FLQRFNNSFRVLALTATPG 482 >sp|A7EFH4|MPH1_SCLS1 ATP-dependent DNA helicase mph1 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 GN=mph1 PE=3 SV=1 Length=1235 Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 41/106 (39%), Positives = 62/106 (58%), Gaps = 4/106 (4%) Query 366 NSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQ 425 +S R I+FT R SA + L + + IRA + +G +S +S M Q Q E I+ Sbjct 635 SSTRVIVFTEYRDSAEDIARVLNKHGPM----IRASVFVGQSDSKRSEGMNQEKQLETIR 690 Query 426 KFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 KF+ G +N++VATS+ EEGLDI +++V Y ++ I M+Q GR Sbjct 691 KFKAGGINVIVATSIGEEGLDIGEVDLIVCYDSSSSPIRMLQRMGR 736 Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 50/173 (29%), Positives = 79/173 (46%), Gaps = 18/173 (10%) Query 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQH 63 R YQ+ ++ L N+++ LPTG GKT AA + +++V + LV+Q Sbjct 266 RRYQYTIVHKGL-FNNLLVALPTGLGKTFIAATIMLNFFRWTTDSQIVFMAPTKPLVSQQ 324 Query 64 GEE-FRRMLDGRWTVTTLSGDMGP--RAGFGHLARCHDLLICTAEL-LQMALTSPEEEEH 119 + F R + T L+GD P RA R + T E L+ + P++ Sbjct 325 VKACFEIAGIPRSSTTMLTGDQSPALRAEEWAEKRVFFMTPQTVENDLKTGIADPKK--- 381 Query 120 VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGT 172 +LIVVDE H + Y ++ Q+ L+R +VL LTA+PG+ Sbjct 382 -----IALIVVDEAHRATGNYAYTKVV-QF----LRRFNESFRVLALTATPGS 424 >sp|Q8IYD8|FANCM_HUMAN Fanconi anemia group M protein OS=Homo sapiens OX=9606 GN=FANCM PE=1 SV=2 Length=2048 Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 48/152 (32%), Positives = 76/152 (50%), Gaps = 15/152 (10%) Query 349 PKLEMLEKILQRQFSSSNS----------PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI 398 PKL+ LE+++ F S N+ R +IF+ R S + L Q Q + I Sbjct 448 PKLKKLEEVVIEHFKSWNAENTTEKKRDETRVMIFSSFRDSVQEIAEMLSQHQPI----I 503 Query 399 RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL 458 R +G + + TQ++Q EV+++F+DG N LV+T V EEGLDI ++++ + Sbjct 504 RVMTFVGHASGKSTKGFTQKEQLEVVKQFRDGGYNTLVSTCVGEEGLDIGEVDLIICFDS 563 Query 459 LTNEISMVQARGR-ARADQSVYAFVATEGSRE 489 + I +VQ GR R Q + +EG E Sbjct 564 QKSPIRLVQRMGRTGRKRQGRIVIILSEGREE 595 Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 29/63 (46%), Gaps = 1/63 (2%) Query 3 LRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ 62 +R YQ + AL N ++ LPTG GKT AA V KVV + LVTQ Sbjct 91 VRDYQLHISRAALFC-NTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVVFMAPTKPLVTQ 149 Query 63 HGE 65 E Sbjct 150 QIE 152 >sp|A6RIS1|MPH1_BOTFB ATP-dependent DNA helicase MPH1 OS=Botryotinia fuckeliana (strain B05.10) OX=332648 GN=mph1 PE=3 SV=2 Length=1229 Score = 73.6 bits (179), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 40/106 (38%), Positives = 62/106 (58%), Gaps = 4/106 (4%) Query 366 NSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQ 425 +S R I+FT R SA + L + + I+A + +G +S +S M Q Q E I+ Sbjct 641 SSTRVIVFTEYRDSAEDIARVLNKHGPM----IKASVFVGQSDSKRSEGMNQEKQLETIR 696 Query 426 KFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 KF+ G +N++VATS+ EEGLDI +++V Y ++ I M+Q GR Sbjct 697 KFKAGGINVIVATSIGEEGLDIGEVDLIVCYDSSSSPIRMLQRMGR 742 Score = 47.4 bits (111), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 77/173 (45%), Gaps = 18/173 (10%) Query 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQH 63 R YQ+ ++ L N+++ LPTG GKT AA + +++V + LV+Q Sbjct 272 RRYQYTIVHKGL-FNNLLVALPTGLGKTFIAATIMLNFFRWTKNSQIVFMAPTKPLVSQQ 330 Query 64 GEE-FRRMLDGRWTVTTLSGDMGP--RAGFGHLARCHDLLICTAEL-LQMALTSPEEEEH 119 + F R + T L+GD P RA R + T E L+ + P+ Sbjct 331 VKACFEIAGIPRSSTTMLTGDQTPALRAEEWDEKRVFFMTPQTVENDLKTGIADPKR--- 387 Query 120 VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGT 172 +L+VVDE H Y ++ +E L+R +VL LTA+PG+ Sbjct 388 -----IALLVVDEAHRATGKYAY----TKVVEF-LRRFNKSFRVLALTATPGS 430 >sp|A2QX45|DCL22_ASPNC Dicer-like protein 2-2 OS=Aspergillus niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) OX=425011 GN=dcl2-2 PE=3 SV=2 Length=1362 Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 48/155 (31%), Positives = 76/155 (49%), Gaps = 17/155 (11%) Query 370 GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQS-THMTQ----RDQQEVI 424 G++F R + +L WL + L + IG + S T + R+Q E + Sbjct 357 GLVFVTQRATVLALK-WLIENHPLTSHLFTCGTFIGMSTTQYSKTELGNLHDIRNQTETL 415 Query 425 QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFVAT 484 +KF+ G+LNL++ T EEG+D+P CN V+ + + S +Q RGRAR + S + + Sbjct 416 EKFRQGSLNLIITTDALEEGIDVPACNTVLNFNCQLSLKSFIQRRGRARRENSQFIIIME 475 Query 485 E--GSRELKRELINEALETLMEQAVAAVQKMDQAE 517 + G R LKR L + + VQK+ AE Sbjct 476 DESGPRYLKR---------LEMEEIELVQKLQNAE 501 Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 58/216 (27%), Positives = 102/216 (47%), Gaps = 23/216 (11%) Query 1 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVV-VLVNRVHL 59 + +R YQ E++ +L+ +N+I+ +PTG GKT+ A ++ + K V +L V L Sbjct 21 LRIREYQLEMLNESLK-RNLIVVMPTGTGKTQVAILRILADIDKGNSDKFVWLLCPTVAL 79 Query 60 VTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 Q ++ + L +A + + + + T ++L AL+ Sbjct 80 SEQQYIQYATVF--------LPSGAEDKAIWDNALSGIKIAVSTYQVLYDALS----HGF 127 Query 120 VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRA-QPLPQVLGLTASPGTGGASKL 178 V+L+ SL++ DE HH KD V N IM + + Q Q LP++LGLTASP S L Sbjct 128 VKLSQMSLLIFDEAHHCKKDHVANKIMQVHYHKQHQSGVQNLPKILGLTASPILSDLSSL 187 Query 179 DGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQP 214 + +++ +C +P+ QL + + +P Sbjct 188 EIVESNLGSICK--------TPRQYYAQLLQFTNRP 215 >sp|I3XHK1|FANCM_ARATH DEAD-box ATP-dependent RNA helicase FANCM OS=Arabidopsis thaliana OX=3702 GN=FANCM PE=2 SV=1 Length=1344 Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 46/150 (31%), Positives = 77/150 (51%), Gaps = 7/150 (5%) Query 343 THGPENPKLEMLEKILQRQFSSSN--SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRA 400 +HG +PKL + +IL F + + R IIF+ R S ++ L + ++A Sbjct 443 SHGAPSPKLSKMLEILVDHFKVKDPKTSRVIIFSNFRGSVRDIMNALSNIGDM----VKA 498 Query 401 QLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT 460 IG + +Q+ QQ V++KF+ G N++VATS+ EEGLDI ++V+ + Sbjct 499 TEFIGQSSGKTLKGQSQKIQQAVLEKFRAGGFNVIVATSIGEEGLDIMEVDLVICFDANV 558 Query 461 NEISMVQARGR-ARADQSVYAFVATEGSRE 489 + + M+Q GR R + +A EGS + Sbjct 559 SPLRMIQRMGRTGRKNNGRVVVLACEGSEK 588 Score = 49.7 bits (117), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 47/173 (27%), Positives = 79/173 (46%), Gaps = 16/173 (9%) Query 3 LRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ 62 LR YQ+ + AL N ++ LPTG GKT AA V + K+V LV Q Sbjct 117 LRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVMYNYFRWFPQGKIVFAAPSRPLVMQ 175 Query 63 HGEEFRRM--LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 E + + WT+ L+G P + L + + T ++L+ + S Sbjct 176 QIEACHNIVGIPQEWTI-DLTGQTCP-SKRAFLWKSKRVFFVTPQVLEKDIQS-----GT 228 Query 121 ELTVFSL-IVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGT 172 LT + + +V+DE H + Y V++ + + + +Q ++L LTA+PG+ Sbjct 229 CLTNYLVCLVIDEAHRALGNYSYCVVVRELMAVPIQL-----RILALTATPGS 276 >sp|Q6BRF0|MPH1_DEBHA ATP-dependent DNA helicase MPH1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=MPH1 PE=3 SV=2 Length=1105 Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 123/555 (22%), Positives = 215/555 (39%), Gaps = 94/555 (17%) Query 1 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV 60 E+R YQ+ ++ A N+++ LPTG GKT A+ V K++ + LV Sbjct 85 FEVRDYQFNIVQRAFYD-NLLVALPTGLGKTFIASTVMLNFTRWFPRGKIIFMAPTKPLV 143 Query 61 TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTS----PEE 116 Q + + + + D R + + T ++++ LT+ P+E Sbjct 144 AQQIKACCGITGIPTSEVAILLDKS-RRNRADIWDSKTVFFTTPQVVENDLTAGIIDPKE 202 Query 117 EEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGAS 176 L+V+DE H + + YN ++ + ++L LTA+P AS Sbjct 203 --------VVLLVIDEAHKSKGNYAYNNVVKFITRFNISF-----RILALTATP----AS 245 Query 177 KLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKL 236 ++G V ++ NL + + ++ +Q K+ +L+ L Sbjct 246 DVEG----VQEIIDNLSISKVEVRTEQSIDITKYMKQ--KKIERVTVSPSVEICELVDML 299 Query 237 MDQIHDHLEMPELSRKFG----TQMYEQQVVKLSE-----AAALAGLQEQRVYALHLRRY 287 I L M R + +++ QV+ S+ GL+ Q + L + Sbjct 300 CTAIQPVLSMANERRIYDMSDPSKINAFQVIDASQRLLKNPTIPEGLKWQNYFILQILNV 359 Query 288 NDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALF----------DDRKNE 337 L + + + D H+E K + + + A F D K Sbjct 360 VGQALRRLNIYGIKSFYNYFDQKHKEFTIKFKNKKSNNQTAARFYFHDNIKLILDKCKEL 419 Query 338 LAHLATHGPENPKLEMLEKILQRQF--SSSNSPRGIIFTRTRQSAHSLL----------- 384 +A G +PKLE+L L F + +N R IIFT R+SA ++ Sbjct 420 IADDNFLG--HPKLEILINELDEFFKENEANDSRVIIFTEFRESALDIVSSIERIGSNLR 477 Query 385 --LWLQQQQGLQTVDIRAQLLI------------GAGNS--------------SQSTHMT 416 +++ Q + + D A L G NS +Q M Sbjct 478 PHIFIGQSKEKEKFDEEAYLSKGKKGRTKGKATKGKQNSETPERSTSRTSSEDAQIKGMN 537 Query 417 QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA---R 473 Q+ Q+++I+KF+ G N+LVATS+ EEGLDI +++V Y ++ I +Q GR R Sbjct 538 QKLQKDLIKKFKKGEYNILVATSIGEEGLDIGEVDLIVCYDSTSSPIKNIQRMGRTGRKR 597 Query 474 ADQSVYAFVATEGSR 488 + + F E S+ Sbjct 598 DGKVLLLFAGNEESK 612 >sp|A1C9M6|DCL2_ASPCL Dicer-like protein 2 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=dcl2 PE=3 SV=1 Length=1389 Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 61/182 (34%), Positives = 86/182 (47%), Gaps = 17/182 (9%) Query 348 NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG 407 +PKLE L L S G+IF + R + S++ L R+ +G Sbjct 366 SPKLEALIGFLDAMDDPEFS--GLIFVKQRATV-SVMTDLLAVHPRTRERFRSAAYVGWS 422 Query 408 NSSQSTH-----MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE 462 NSS S ++ Q + F+ G NL++AT V EEG+DI C+VVV Y N Sbjct 423 NSSGSKDFLGNLLSMHGQLSTLDDFRSGHKNLIIATDVLEEGIDISACSVVVCYDKPPNL 482 Query 463 ISMVQARGRARADQSVYA--FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA 520 S VQ RGRAR QS YA F A + + +L + +TL EQA+ + D+ Q+ Sbjct 483 KSFVQRRGRARQKQSTYAIMFPAEDSAFDLAK------WQTL-EQAMIEAYQDDERHLQS 535 Query 521 KI 522 I Sbjct 536 AI 537 Score = 53.1 bits (126), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 55/218 (25%), Positives = 100/218 (46%), Gaps = 19/218 (9%) Query 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVV-VLVNRVHLVTQ 62 R+YQ E++ +++ +NII+ + TG+GKT A K L++ K++ L V L TQ Sbjct 17 RNYQLEMLEASMK-ENIIVAMDTGSGKTHIAVLRIKAELDSCPPDKIIWFLAPTVALCTQ 75 Query 63 HGEEFRRMLDGRWTVTTLSGD----MGPRAGFGHLARCHDLLICTAELLQMALTSPEEEE 118 + L T T D +A + + + +++ T +L AL+ Sbjct 76 QHKVIASNLPAVQTRTLTGLDKVELWTEQAIWDAILKDVRVVVSTYAVLADALS----HG 131 Query 119 HVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQP--LPQVLGLTASPGTGGAS 176 + ++ +LI+ DE HH + N IM + + + P +P+++GLTASP Sbjct 132 FMRMSRLALIIFDEAHHCMRKHAANKIMQDFYHPTVSKFGPSAVPRIMGLTASPVVRSNR 191 Query 177 KLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQP 214 + + + NLD C +P+ +L + S +P Sbjct 192 E------ELFTIETNLDAVC-KTPRAHRQELLKFSHRP 222 >sp|Q10HL3|DCL2A_ORYSJ Endoribonuclease Dicer homolog 2a OS=Oryza sativa subsp. japonica OX=39947 GN=DCL2A PE=2 SV=1 Length=1410 Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 51/84 (61%), Gaps = 0/84 (0%) Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465 AG+ ++++ E+++ F+ G +++++AT + EEGLD+P CN+V+R+ S Sbjct 432 AGSRPGLLSQSRKNHTEIVESFRKGKVHIIIATQILEEGLDVPSCNLVIRFDPSATVCSF 491 Query 466 VQARGRARADQSVYAFVATEGSRE 489 +Q+RGRAR + S Y + G E Sbjct 492 IQSRGRARMENSDYLLLVGRGDVE 515 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 78/176 (44%), Gaps = 17/176 (10%) Query 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETV---DGAKV-VVLVNRVHL 59 R YQ E + A+ G N + +L TG+GKT A + + + V D + V LV V L Sbjct 35 RWYQLEALERAVRG-NTLAFLETGSGKTLIAVMLLRAYAHRVRRPDSRRFAVFLVPTVVL 93 Query 60 VTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCH----DLLICTAELLQMALTSPE 115 V Q + D V G+MG R ++L+ T ++L L Sbjct 94 VGQQARVVEQHTD--LVVKQFCGEMGVDFWDAATWRSQLEDGEVLVMTPQILLDNL---- 147 Query 116 EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYL--ELKLQRAQPLPQVLGLTAS 169 L +L++ DECHH +T Y I ++ +L + PLP++ G++AS Sbjct 148 RHSFFRLQDIALLIFDECHHARGNTPYACIFKEFYHPQLNSSASDPLPRIFGMSAS 203 >sp|Q69LX2|DCL2B_ORYSJ Endoribonuclease Dicer homolog 2b OS=Oryza sativa subsp. japonica OX=39947 GN=DCL2B PE=2 SV=2 Length=1377 Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 51/84 (61%), Gaps = 0/84 (0%) Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465 AG+ ++++ E+++ F+ G +++++AT + EEGLD+P CN+V+R+ S Sbjct 432 AGSRPGLLSQSRKNHTEIVESFRKGKVHIIIATQILEEGLDVPSCNLVIRFDPSATVCSF 491 Query 466 VQARGRARADQSVYAFVATEGSRE 489 +Q+RGRAR + S Y + G E Sbjct 492 IQSRGRARMENSDYLLLVGRGDVE 515 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 78/176 (44%), Gaps = 17/176 (10%) Query 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETV---DGAKV-VVLVNRVHL 59 R YQ E + A+ G N + +L TG+GKT A + + + V D + V LV V L Sbjct 35 RWYQLEALERAVRG-NTLAFLETGSGKTLIAVMLLRAYAHRVRRPDSRRFAVFLVPTVVL 93 Query 60 VTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCH----DLLICTAELLQMALTSPE 115 V Q + D V G+MG R ++L+ T ++L L Sbjct 94 VGQQARVVEQHTD--LVVKQFCGEMGVDFWDAATWRSQLEDGEVLVMTPQILLDNL---- 147 Query 116 EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYL--ELKLQRAQPLPQVLGLTAS 169 L +L++ DECHH +T Y I ++ +L + PLP++ G++AS Sbjct 148 RHSFFRLQDIALLIFDECHHARGNTPYACIFKEFYHPQLNSSASDPLPRIFGMSAS 203 >sp|Q0UL22|DCL2_PHANO Dicer-like protein 2 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) OX=321614 GN=DCL2 PE=3 SV=2 Length=1399 Score = 67.0 bits (162), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 65/133 (49%), Gaps = 17/133 (13%) Query 418 RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQS 477 R+QQ ++ F+ G LNL++ATSV EEG+D+ C++VV + N S VQ RGRAR ++S Sbjct 436 RNQQATLENFRAGKLNLILATSVLEEGIDVSSCHLVVCFESPKNLKSFVQRRGRARKEES 495 Query 478 VYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQA 537 Y + R E + Q +++ A + DL+Q L Q Sbjct 496 KYVIFVPQAGRRRDPE---------------SWQSLEEGMKAAYLDDLRQVKLATEKEQ- 539 Query 538 AQRENQRQQFPVE 550 Q E + F V+ Sbjct 540 -QSETGHRNFEVK 551 Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 53/176 (30%), Positives = 85/176 (48%), Gaps = 14/176 (8%) Query 1 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVV-VLVNRVHL 59 LRSYQ E++ +++ NII + TG+GKT A + LE K+V L V L Sbjct 9 FRLRSYQAEMVEESMQS-NIICVMDTGSGKTHIAIDRTRAELEICRPDKIVWFLAPTVTL 67 Query 60 VTQHGEEFRRMLDGRWTVTTLSG----DMGPRAG-FGHLARCHDLLICTAELLQMALTSP 114 Q F+ L G + + LSG D G + + +++ T ++L AL+ Sbjct 68 CEQQFAVFKSNLPG-YGIQLLSGKDNLDHWTDQGVWDDVLLNIRIVLSTHQVLLDALS-- 124 Query 115 EEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASP 170 V++ SL++ DE HH + IMS + + ++ LP++LGL+ASP Sbjct 125 --HGFVKMRNLSLLIFDEAHHCSLKHPAHRIMSDFYKPRI--GTELPRILGLSASP 176 >sp|A3GH78|MPH1_PICST ATP-dependent DNA helicase MPH1 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) OX=322104 GN=MPH1 PE=3 SV=3 Length=1050 Score = 66.2 bits (160), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 55/218 (25%), Positives = 100/218 (46%), Gaps = 55/218 (25%) Query 308 DFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNS 367 DFY E + + +R+ + DD K + +H PK+E + + L F+ +N+ Sbjct 403 DFYFSEPIKQLM-----KRIRTMIDDPK-----VFSH----PKIEAMMEELDEFFTINNA 448 Query 368 --PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG-------------------- 405 + IIFT R+SA ++ ++++ +++ + IG Sbjct 449 TDSKVIIFTEFRESALEIVRFIEKVGK----NLKPHIFIGQAKERDKFDESNFGKKSKGK 504 Query 406 ------------AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV 453 + ++Q M Q+ Q+E+I+ F+ GT N+LVATS+ EEGLDI +++ Sbjct 505 RVGKKQQDDSKSSSENAQINGMNQKLQKEIIKNFKQGTYNILVATSIGEEGLDIGEVDLI 564 Query 454 VRYGLLTNEISMVQARGRA---RADQSVYAFVATEGSR 488 + Y ++ I +Q GR R + V F + E S+ Sbjct 565 ICYDSTSSPIKNIQRMGRTGRKRDGKVVLLFSSNEESK 602 Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust. Identities = 48/199 (24%), Positives = 84/199 (42%), Gaps = 31/199 (16%) Query 1 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV 60 E+R YQ+ ++ A N+++ LPTG GKT A+ V L +K++ + LV Sbjct 86 FEVRDYQFNIVQRAF-YHNLLVALPTGLGKTFIASTVMLNFLRWFPESKMIFVAPTKPLV 144 Query 61 TQHGEEFRRMLDGRWTVTTLSGDM------GPRAGFGHLARCHDLLICTAELLQMALTSP 114 Q + ++T + R G + + T ++++ L S Sbjct 145 AQQ-------IKACCSITGIPSSKVAILLDKTRKNRGEIWDEKQVFFTTPQVVENDLASG 197 Query 115 EEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGG 174 V+ +L+V+DE H + YN I+ + R ++L LTA+P Sbjct 198 ----LVDPKTIALLVIDEAHRAKGNYAYNNIVKF-----MDRFTNSYRILALTATP---- 244 Query 175 ASKLDGAINHVLQLCANLD 193 AS +DG V ++ NL+ Sbjct 245 ASDVDG----VQEIIDNLN 259 >sp|Q75AA7|MPH1_EREGS ATP-dependent DNA helicase MPH1 OS=Eremothecium gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=MPH1 PE=3 SV=2 Length=1077 Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 124/563 (22%), Positives = 219/563 (39%), Gaps = 132/563 (23%) Query 2 ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVT 61 E+R YQ+ ++ AL +N++ +PTG GKT A+ V + G K++ LV Sbjct 91 EVREYQFNIVHRAL-FENVLCAIPTGMGKTFIASTVMLNYYRWTVGTKIIFTAPTRPLVA 149 Query 62 QHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALT----SPEEE 117 Q + + + T + D R + + T ++++ L +P++ Sbjct 150 QQIKACLGITGIPYNDTAILLDKS-RKHREQIWSEKRVFFATPQVVENDLKRGALNPKD- 207 Query 118 EHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASK 177 L+V+DE H Y V ++++++ R +VL LTA+P A+ Sbjct 208 -------VVLLVIDEAHRARGSYAY-VELTKFID----RFNTSYRVLALTATP----ATD 251 Query 178 LDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLM 237 L+G V ++ NL I +L+ + +Y RR + +++ L+ Sbjct 252 LEG----VQEVVDNLQISKI--------ELRTEESEDIVRY--MKRRDTE---EVIVPLI 294 Query 238 DQIHDHLE------MPELSRKFGTQMYE-------------QQVVK-LSEAAALAGLQEQ 277 +I D +E P L +Y+ QQ K L+ ++ G++ + Sbjct 295 PEIEDIIEQLGIAITPVLKEAVQLGLYDDCEPVNINAFIAMQQSQKILANSSIPEGVKWK 354 Query 278 RVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALF------ 331 + L L + +L + + D +RE TK I + + A F Sbjct 355 NYFILQLLCHVGHMLKRLKIYGIQTFYTYFDNKYREFTTKYGIGKSTNKTAASFYYSSIL 414 Query 332 -DDRKNELAHLAT-----HGPENPKLEMLEKILQRQFSSS-NSPRGIIFTRTRQSAHSLL 384 + K A+ A HG KL + L F+S+ + R IIFT R+SA L+ Sbjct 415 KNITKTCQAYTANPSFLGHG----KLYRVRDELSTFFASAGDDSRVIIFTELRESALELV 470 Query 385 --------------LWLQQQQGLQTVD--------------------------------- 397 +++ Q +G ++ D Sbjct 471 KCVDNMNDRFIRPHIFIGQAKGKESFDDGEYLRKHAPKGRKKVDRIRRLEEEKRLADEKL 530 Query 398 --------IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPH 449 R G+ +Q + MTQ+ Q+EVI F+ G N+LV TS+ EEGLDI Sbjct 531 RKKEEEKLARTARRTGSSEEAQISGMTQKQQKEVISLFKKGDYNVLVCTSIGEEGLDIGE 590 Query 450 CNVVVRYGLLTNEISMVQARGRA 472 ++++ Y ++ I +Q GR Sbjct 591 VDMIICYDTTSSPIKNIQRMGRT 613 >sp|Q9VDA0|FANCM_DROME DEAD-box ATP-dependent DNA helicase Fancm OS=Drosophila melanogaster OX=7227 GN=Fancm PE=1 SV=2 Length=1489 Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 42/140 (30%), Positives = 75/140 (54%), Gaps = 7/140 (5%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K E L ++L + F ++ R I+F R+S + L Q + + +R + +G G++ Sbjct 415 KYEKLRQVLVQHFQANPDSRAIVFCEYRESVMLIHRLLLQHRPV----LRPRCFVGQGST 470 Query 410 SQSTH-MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL-TNEISMVQ 467 +++ +TQ+ Q +++ F+ GT N+LVATS+ EEGLD+ ++V + + TN +Q Sbjct 471 VGASYALTQKQQLQIMTDFRSGTSNVLVATSIGEEGLDVGEVEMIVCFDICSTNPTRFIQ 530 Query 468 ARGR-ARADQSVYAFVATEG 486 GR R + TEG Sbjct 531 RIGRTGRKKNGEVVMLVTEG 550 Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 51/193 (26%), Positives = 81/193 (42%), Gaps = 16/193 (8%) Query 1 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV 60 + LRSYQ ++ AL KN ++ LPTG GKT AA V K+V + LV Sbjct 56 LPLRSYQQTIVQSAL-FKNTLVVLPTGLGKTFIAAVVMYNFYRWYPKGKIVFMAPTRPLV 114 Query 61 TQHGEEFRRMLDGRWTVTT-LSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 +Q ++++ T L+G + PR L + T +++ + + E Sbjct 115 SQQIHASQKIMPFPSEDTVQLTGQL-PRPKRAELWASKRVFFATPQVVHSDMLEADGECS 173 Query 120 VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLD 179 LIVVDE H Y +Q + + R + ++L L+A+PG Sbjct 174 FPFGSIKLIVVDEAHRAKGRYAY----TQVADCLMARNRYF-RMLALSATPGR------- 221 Query 180 GAINHVLQLCANL 192 + V +C NL Sbjct 222 -TMEDVAAVCRNL 233 >sp|Q9LXW7|DCL3_ARATH Endoribonuclease Dicer homolog 3 OS=Arabidopsis thaliana OX=3702 GN=DCL3 PE=1 SV=2 Length=1580 Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 113/517 (22%), Positives = 206/517 (40%), Gaps = 90/517 (17%) Query 5 SYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLET-VDGAKVVVLVNRVHLVTQH 63 SY+ +V A + +NII L TG K+ + K + D ++ L V+LV Q Sbjct 46 SYELKVYEVA-KNRNIIAVLGTGIDKSEITKRLIKAMGSSDTDKRLIIFLAPTVNLVKQQ 104 Query 64 GEEFRRMLD------------GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMAL 111 E R +++ +WT + HD+L+ T ++L L Sbjct 105 CCEIRALVNLKVEEYFGAKGVDKWTSQRWDEEFSK----------HDVLVMTPQILLDVL 154 Query 112 TSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPG 171 S ++L + L+++DECHHT + Y +M ++ + P++ GLTAS Sbjct 155 RSA----FLKLEMVCLLIIDECHHTTGNHPYAKLMKEF----YHESTSKPKIFGLTAS-- 204 Query 172 TGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQ-QPCKQYNLCHRRSQDPFG 230 A + + SP N Q+ E + K +N R + F Sbjct 205 ------------------AVIRKGIVSSPSNYAAQVSELERLMDSKIFNPEEREGVEKFA 246 Query 231 DLLKK--LMDQIHDHLEMPELSRKFGTQ--MYEQQVVKLSEAAALAGLQEQRVYALHLRR 286 +K+ ++ + EL K T ++ + +L E + L + + +R Sbjct 247 TTVKEGPILYNPSPSCSL-ELKEKLETSHLKFDASLRRLQELGKDSFLNMDNKFETYQKR 305 Query 287 ----YNDALLIHDTVRAVDALAALQDFYHREHVTKTQ--------ILCAE--RRLLA--- 329 Y + L D + + A A + + TK + ++C E +L+ Sbjct 306 LSIDYREILHCLDNLGLICAHLAAEVCLEKISDTKEESETYKECSMVCKEFLEDILSTIG 365 Query 330 ---------LFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSA 380 L D ++N L+ + + G +PKL+ L +L F + +I +A Sbjct 366 VYLPQDDKSLVDLQQNHLSAVIS-GHVSPKLKELFHLLD-SFRGDKQKQCLILVERIITA 423 Query 381 HSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSV 440 + +++++ L +++ L + N S + Q+ Q E+ FQ G +NLL T V Sbjct 424 KVIERFVKKEASLAYLNV---LYLTENNPSTNVS-AQKMQIEIPDLFQHGKVNLLFITDV 479 Query 441 AEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQS 477 EEG +P C+ +V + L S Q++ A+ S Sbjct 480 VEEGFQVPDCSCMVCFDLPKTMCSYSQSQKHAKQSNS 516 >sp|Q6FPQ3|MPH1_CANGA ATP-dependent DNA helicase MPH1 OS=Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=MPH1 PE=3 SV=1 Length=1052 Score = 64.3 bits (155), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 36/104 (35%), Positives = 57/104 (55%), Gaps = 3/104 (3%) Query 388 QQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDI 447 ++Q LQ R G+ +Q + M Q+ Q+EVI+KF+ G N+LV TS+ EEGLDI Sbjct 519 KKQAALQEKLERTSRRTGSSEEAQLSGMNQKQQKEVIKKFKSGLYNVLVCTSIGEEGLDI 578 Query 448 PHCNVVVRYGLLTNEISMVQARGRA---RADQSVYAFVATEGSR 488 ++++ Y ++ I +Q GR R + V F + E S+ Sbjct 579 GEVDLIICYDTTSSPIKNIQRMGRTGRKRDGRIVLMFSSNEASK 622 Score = 35.0 bits (79), Expect = 2.8, Method: Compositional matrix adjust. Identities = 20/63 (32%), Positives = 31/63 (49%), Gaps = 1/63 (2%) Query 1 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV 60 E+R YQ++++ L +NI+ +PTG GKT A+ V AK++ LV Sbjct 80 FEVRDYQFDIVRKGL-LQNILCAIPTGMGKTFIASTVMLNFFRWTKTAKIIFTAPTRPLV 138 Query 61 TQH 63 Q Sbjct 139 AQQ 141 >sp|Q9VCU9|DCR1_DROME Endoribonuclease Dcr-1 OS=Drosophila melanogaster OX=7227 GN=Dcr-1 PE=1 SV=1 Length=2249 Score = 63.5 bits (153), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 29/64 (45%), Positives = 43/64 (67%), Gaps = 0/64 (0%) Query 411 QSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARG 470 + + R Q+EV+++F+ N+L+ TSV EEG+D+P CN+VVR+ T S VQ +G Sbjct 542 KEAELEHRRQEEVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPTTYRSYVQCKG 601 Query 471 RARA 474 RARA Sbjct 602 RARA 605 >sp|A0A1D5PRR9|FANCM_CHICK Fanconi anemia group M protein OS=Gallus gallus OX=9031 GN=FANCM PE=1 SV=1 Length=2041 Score = 63.2 bits (152), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 71/156 (46%), Gaps = 19/156 (12%) Query 349 PKLEMLEKILQRQFSSSN--------------SPRGIIFTRTRQSAHSLLLWLQQQQGLQ 394 PKL+ LE+I+ F S R +IF+ R S + L + + Sbjct 443 PKLKKLEEIVIEHFKSRKMGCSDQTTSGGTCVDTRVMIFSSFRDSVQEIAEMLSRFSPV- 501 Query 395 TVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV 454 +R +G + TQ++Q EV+++F++G N LV+T V EEGLDI ++++ Sbjct 502 ---VRVMTFVGHSTGKSTKGFTQKEQLEVVKRFREGGYNTLVSTCVGEEGLDIGEVDLII 558 Query 455 RYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRE 489 + + I +VQ GR R Q + EG E Sbjct 559 CFDAQKSPIRLVQRMGRTGRQRQGRVVVILAEGREE 594 Score = 33.5 bits (75), Expect = 9.1, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 66/174 (38%), Gaps = 20/174 (11%) Query 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQH 63 R YQ + AL N ++ LPTG GKT AA V KV+ L LV Q Sbjct 85 RPYQLRMARAALFA-NTLLCLPTGLGKTFVAAVVMYNFYRWFPSGKVLFLAPTKALVAQQ 143 Query 64 GEEFRRMLD--GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMAL---TSPEEEE 118 E +++ GR G L + T +++ L T P E Sbjct 144 MEACAQLMGIPGRDMAEMTGGTQA--LSRRELWASRRVFFLTPQIMVNDLSRGTCPAVE- 200 Query 119 HVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGT 172 +VVDE H + Y ++ + L R +VL LTA+PG+ Sbjct 201 ------VKCLVVDEAHKALGNHAYCQVVKE-----LSRYTTQFRVLALTATPGS 243 >sp|A2R345|DCL21_ASPNC Dicer-like protein 2-1 OS=Aspergillus niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) OX=425011 GN=dcl2-1 PE=3 SV=2 Length=1387 Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/136 (34%), Positives = 69/136 (51%), Gaps = 11/136 (8%) Query 351 LEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG-AGNS 409 LE L+ + FS G+IF + R + S++ L + R +G +G Sbjct 375 LEFLDTKGEPNFS------GLIFAKQRATV-SVMEKLLSIHPVTKHRFRCASFVGWSGGG 427 Query 410 SQSTH---MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV 466 S+ + R Q++ + +F+ G NL++AT V EEG+DI C+VVV + N S V Sbjct 428 SKDVLGELLDARMQRDTLSEFRTGQKNLIIATDVLEEGIDISACSVVVCFDKPPNLKSFV 487 Query 467 QARGRARADQSVYAFV 482 Q RGRAR QS YA + Sbjct 488 QRRGRARHRQSTYAIM 503 Score = 56.6 bits (135), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 59/220 (27%), Positives = 105/220 (48%), Gaps = 24/220 (11%) Query 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQH 63 RSYQ E+ +L+ +NII+ + TG+GKT A + LE+ + L V L Q Sbjct 20 RSYQVEMFEASLK-ENIIVTMGTGSGKTHIALLRIIKELESNPHKLIWFLTPTVALCLQ- 77 Query 64 GEEFRRMLDG-----RWTVTTLSGD--MGPRAGFGHLARCHDLLICTAELLQMALTSPEE 116 +F+ + D T+T+L + + + + +++ T +L A++ Sbjct 78 --QFKFLSDNIPAVRARTLTSLDKVELWTEQPVWDAILKEMQVVVSTHAVLADAMS---- 131 Query 117 EEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQR--AQPLPQVLGLTASPGTGG 174 V++T L++ DE HH + N IM + L+R A+ +P++LGLTASP Sbjct 132 HGFVKITQLGLMIFDEAHHCMRRHPANKIMQDFYHPALERHGAEAVPKILGLTASPVVRS 191 Query 175 ASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQP 214 + +L++ +NLD C +P+ +L H+ +P Sbjct 192 NRQ------ELLKIESNLDAVC-KTPRTHRSELMTHTHRP 224 >sp|Q1DW80|DCL2_COCIM Dicer-like protein 2 OS=Coccidioides immitis (strain RS) OX=246410 GN=DCL2 PE=3 SV=3 Length=1435 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 83/172 (48%), Gaps = 17/172 (10%) Query 345 GPENPKLEMLEKILQR----QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGL--QTVDI 398 G +NP E+ K+ + N GI+F R ++++ L Q L +T I Sbjct 386 GVQNPPDELSRKVHKLIDFLVLEHVNGSIGIVFAEER----TIVIMLAQLLSLHPRTKHI 441 Query 399 RAQLLIGAGNS-SQSTHMTQR----DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV 453 + +G+ S S+ + +T+ DQ I + G +L++AT+V EEG+D+P C++V Sbjct 442 KTTAFLGSSASVSRKSDITELHNPIDQSTAIDDLRTGKKDLIIATAVLEEGIDVPICDLV 501 Query 454 VRYGLLTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQ 505 + + L + S +Q RGRAR S +A R EL +E M+Q Sbjct 502 ICFDLPKDLRSFIQRRGRARKKGSKFALFLHSEDRATSSEL--HLMEKTMKQ 551 Score = 59.7 bits (143), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 57/180 (32%), Positives = 82/180 (46%), Gaps = 20/180 (11%) Query 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVV-VLVNRVHLVTQ 62 R YQ E++ +L +NII+ + TG+GKT A +R LE K V + V LV Q Sbjct 48 RGYQLEMLSESLR-QNIIVAMDTGSGKTEIAILRIQRELERCPAHKFVWFMAPTVALVEQ 106 Query 63 HGEEFR--------RMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP 114 R+L G V+ S + + + ++I T ++L AL++ Sbjct 107 QHSAISKQLPAFQTRLLTGAANVSHWST----KKIWDDILLNIRIVISTPQVLLDALSN- 161 Query 115 EEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQR--AQPLPQVLGLTASPGT 172 V+L SL+V DE HH +D N IM + Q LP +LGLTASP T Sbjct 162 ---GFVDLHTISLLVFDEAHHCVRDAPANRIMRDFYHYHRQEEGTDGLPHILGLTASPTT 218 >sp|A1ZAW0|DCR2_DROME Endoribonuclease Dcr-2 OS=Drosophila melanogaster OX=7227 GN=Dcr-2 PE=1 SV=1 Length=1722 Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 43/150 (29%), Positives = 77/150 (51%), Gaps = 11/150 (7%) Query 349 PKLEMLEKILQRQFSSSNSPRGI---IFTRTRQSA---HSLLL-WLQQQQGLQTVDIRAQ 401 PK++ L+ F+ + P+ I +F R + + LLL ++Q L+ V + Q Sbjct 365 PKVQRFLMSLKVSFADKD-PKDICCLVFVERRYTCKCIYGLLLNYIQSTPELRNV-LTPQ 422 Query 402 LLIGAGNSSQS--THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL 459 ++G N S + + ++ Q+ IQ+F+DG NL++ +SV EEG+D+ CN V + Sbjct 423 FMVGRNNISPDFESVLERKWQKSAIQQFRDGNANLMICSSVLEEGIDVQACNHVFILDPV 482 Query 460 TNEISMVQARGRARADQSVYAFVATEGSRE 489 VQ++GRAR ++ + + RE Sbjct 483 KTFNMYVQSKGRARTTEAKFVLFTADKERE 512 Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/175 (27%), Positives = 80/175 (46%), Gaps = 20/175 (11%) Query 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVD------GAKVVVLVNRV 57 R YQ ++ L N I++LPTG+GKT A V KR + D G + + + N V Sbjct 9 RGYQLRLV-DHLTKSNGIVYLPTGSGKTFVAILVLKRFSQDFDKPIESGGKRALFMCNTV 67 Query 58 HLVTQHGEEFRRMLDGRWTVTTLSGDMG----PRAGFGHLARCHDLLICTAELLQMALTS 113 L Q RR + + V G+ G R + + + +L+ TA++ +T Sbjct 68 ELARQQAMAVRRCTN--FKVGFYVGEQGVDDWTRGMWSDEIKKNQVLVGTAQVFLDMVT- 124 Query 114 PEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTA 168 + +V L+ S++++DECHH + M + + LP+V+GLT Sbjct 125 ---QTYVALSSLSVVIIDECHHGTGHHPFREFMRLF---TIANQTKLPRVVGLTG 173 >sp|A7TSV4|MPH1_VANPO ATP-dependent DNA helicase MPH1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 GN=MPH1 PE=3 SV=1 Length=1012 Score = 60.1 bits (144), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 64/120 (53%), Gaps = 3/120 (3%) Query 399 RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL 458 R+ G+ +Q + M Q+ Q+EVI KF++G N+LV TS+ EEGLDI ++++ + Sbjct 535 RSSRRTGSSEEAQISGMNQKQQKEVISKFKNGDYNVLVCTSIGEEGLDIGEVDMIICFDT 594 Query 459 LTNEISMVQARGRA--RADQSVYAFVATEGSRELKRELIN-EALETLMEQAVAAVQKMDQ 515 + I +Q GR + D + + SR+ ++ + + L+ L+ Q +K D+ Sbjct 595 TGSPIKNIQRMGRTGRKRDGKILLLFSGNESRKFEKAMEDYYDLQRLIGQNFVEYKKSDR 654 >sp|A6ZVS0|MPH1_YEAS7 ATP-dependent DNA helicase MPH1 OS=Saccharomyces cerevisiae (strain YJM789) OX=307796 GN=MPH1 PE=3 SV=1 Length=993 Score = 59.7 bits (143), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 57/223 (26%), Positives = 101/223 (45%), Gaps = 40/223 (18%) Query 295 DTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPEN-PKLEM 353 + V+ +D++A Q + I + R FD E+ + H P+ K+E Sbjct 463 EIVKFIDSVANDQ--------IRPHIFIGQARAKEGFD----EVKYTRKHAPKGRKKVER 510 Query 354 LEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQST 413 L + Q +F + RT+++A+ L R+ G+ +Q + Sbjct 511 LHRQEQEKFLEAE--------RTKRAANDKLE-------------RSARRTGSSEEAQIS 549 Query 414 HMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA- 472 M Q+ Q+EVI F+ G N+LV TS+ EEGLDI ++++ Y ++ I +Q GR Sbjct 550 GMNQKMQKEVIHNFKKGEYNVLVCTSIGEEGLDIGEVDLIICYDTTSSPIKNIQRMGRTG 609 Query 473 -RADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMD 514 + D + ++ S + +R + E TL QA+ + Q +D Sbjct 610 RKRDGKIVLLFSSNESYKFERAM--EDYSTL--QALISKQCID 648 Score = 34.3 bits (77), Expect = 5.0, Method: Compositional matrix adjust. Identities = 19/62 (31%), Positives = 31/62 (50%), Gaps = 1/62 (2%) Query 2 ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVT 61 E+R YQ+ ++ +L +N + +PTG GKT A+ V + AK++ LV Sbjct 86 EVRDYQYTIVHKSL-FQNTLCAIPTGMGKTFIASTVMLNYFRWTKKAKIIFTAPTRPLVA 144 Query 62 QH 63 Q Sbjct 145 QQ 146 >sp|P40562|MPH1_YEAST ATP-dependent DNA helicase MPH1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=MPH1 PE=1 SV=1 Length=993 Score = 59.7 bits (143), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 57/221 (26%), Positives = 100/221 (45%), Gaps = 40/221 (18%) Query 297 VRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPEN-PKLEMLE 355 V+ +D++A Q + I + R FD E+ + H P+ K+E L Sbjct 465 VKFIDSVADDQ--------IRPHIFIGQARAKEGFD----EVKYTRKHAPKGRKKVERLH 512 Query 356 KILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHM 415 + Q +F + RT+++A+ L R+ G+ +Q + M Sbjct 513 RQEQEKFLEAE--------RTKRAANDKLE-------------RSARRTGSSEEAQISGM 551 Query 416 TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA--R 473 Q+ Q+EVI F+ G N+LV TS+ EEGLDI ++++ Y ++ I +Q GR + Sbjct 552 NQKMQKEVIHNFKKGEYNVLVCTSIGEEGLDIGEVDLIICYDTTSSPIKNIQRMGRTGRK 611 Query 474 ADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMD 514 D + ++ S + +R + E TL QA+ + Q +D Sbjct 612 RDGKIVLLFSSNESYKFERAM--EDYSTL--QALISKQCID 648 Score = 34.3 bits (77), Expect = 5.0, Method: Compositional matrix adjust. Identities = 19/62 (31%), Positives = 31/62 (50%), Gaps = 1/62 (2%) Query 2 ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVT 61 E+R YQ+ ++ +L +N + +PTG GKT A+ V + AK++ LV Sbjct 86 EVRDYQYTIVHKSL-FQNTLCAIPTGMGKTFIASTVMLNYFRWTKKAKIIFTAPTRPLVA 144 Query 62 QH 63 Q Sbjct 145 QQ 146 >sp|Q8GY84|RH10_ARATH DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis thaliana OX=3702 GN=RH10 PE=1 SV=2 Length=456 Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 52/108 (48%), Gaps = 15/108 (14%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 +IFTRT L L L+ G + + I Q MTQ + + KF+ G Sbjct 264 MIFTRTCDGTRFLALVLRSL-GFRAIPISGQ-------------MTQSKRLGALNKFKAG 309 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQS 477 N+LV T VA GLDIP +VV+ Y + TN + GR ARA +S Sbjct 310 ECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRS 357 >sp|Q6CB69|DED1_YARLI ATP-dependent RNA helicase DED1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DED1 PE=3 SV=1 Length=618 Score = 56.6 bits (135), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 42/128 (33%), Positives = 64/128 (50%), Gaps = 16/128 (13%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 ++F T++ A L LQ + D A + G +QRD++ ++ F+DG Sbjct 422 LVFVETKRGADYLCDVLQSE------DFPATSIHG--------DRSQRDRERALEMFRDG 467 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA-DQSVYAFVATEGSR 488 T +LVAT+VA GLDIP+ VV Y L T+ V GR RA + + G++ Sbjct 468 TTPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNK 527 Query 489 ELKRELIN 496 + RELI+ Sbjct 528 GIVRELID 535 >sp|A3LS22|RRP3_PICST ATP-dependent rRNA helicase RRP3 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) OX=322104 GN=RRP3 PE=3 SV=3 Length=484 Score = 55.8 bits (133), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 42/110 (38%), Positives = 58/110 (53%), Gaps = 19/110 (17%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQ 428 IIF RTR AH+ Q I ++L G S+ H +TQ + + KF+ Sbjct 314 IIFARTR--AHT-----------QRTSILCRIL---GFSAVPLHGDLTQAQRLGSLNKFK 357 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQS 477 GT N+L+AT VA GLDIP +VV+ Y + T+ + V GR ARA +S Sbjct 358 SGTANILIATDVAARGLDIPSVDVVINYDIPTDSKAYVHRVGRTARAGRS 407 >sp|P96130|RECG_TREPA ATP-dependent DNA helicase RecG OS=Treponema pallidum (strain Nichols) OX=243276 GN=recG PE=3 SV=1 Length=686 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 10/76 (13%) Query 413 THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQ 467 + MT+ +QQ +++ F +GT+++LVATSV E G+D+P+ N +V R+GL ++ Q Sbjct 529 SKMTEEEQQRIMKYFSEGTVHILVATSVVEVGVDVPNANCIVIEHAERFGL----SALHQ 584 Query 468 ARGR-ARADQSVYAFV 482 RGR R D Y F+ Sbjct 585 LRGRVGRGDVQSYCFL 600 >sp|Q0CIQ3|RRP3_ASPTN ATP-dependent rRNA helicase rrp3 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=rrp3 PE=3 SV=2 Length=445 Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/113 (36%), Positives = 55/113 (49%), Gaps = 15/113 (13%) Query 370 GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD 429 GIIFTRT L + L+ G + I QL SQS + + KF+ Sbjct 269 GIIFTRTVHETQRLSIMLRNL-GFPAIPIHGQL-------SQSARLAS------LNKFRA 314 Query 430 GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF 481 + NLL+AT VA GLDIP + V+ Y L + + + GR ARA +S AF Sbjct 315 RSRNLLIATDVAARGLDIPAVDYVLNYDLPQDSKTYIHRVGRTARAGKSGIAF 367 >sp|A7TKR8|DED1_VANPO ATP-dependent RNA helicase DED1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 GN=DED1 PE=3 SV=1 Length=650 Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 52/193 (27%), Positives = 83/193 (43%), Gaps = 28/193 (15%) Query 363 SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE 422 S+SN +IF T++ A L +L Q D RA + G TQ +++ Sbjct 413 SASNDGLTLIFVETKRMADELTDFLIMQ------DFRATAIHG--------DRTQSERER 458 Query 423 VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGRARADQSVY 479 + F++G NLLVAT+VA GLDIP+ VV Y L + + + + GRA Sbjct 459 ALAAFKNGNANLLVATAVAARGLDIPNVTHVVNYDLPSDIDDYVHRIGRTGRAGNTGVAT 518 Query 480 AFVATEGSRELKR---ELINEA-------LETLMEQAVAAVQKMDQAEYQAKIRDLQQAA 529 AF G+R + + EL+ EA L +M ++ + + RD +++ Sbjct 519 AFF-NRGNRNIVKGMYELLAEANQEIPPFLNDVMRESGRGGRTSGFSSRNNSNRDYRRSG 577 Query 530 LTKRAAQAAQREN 542 + R N Sbjct 578 SNNGGSWGNSRSN 590 >sp|Q55804|CRHR_SYNY3 RNA helicase CrhR OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa) OX=1111708 GN=crhR PE=1 SV=1 Length=492 Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 85/176 (48%), Gaps = 24/176 (14%) Query 356 KILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH- 414 K LQ + IIF RT+Q+A L LQ+ AG+S H Sbjct 234 KALQPILEMEDPESAIIFVRTKQTAADLTSRLQE----------------AGHSVDEYHG 277 Query 415 -MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-A 472 ++Q ++ ++ +F+DG + L+VAT +A GLD+ + + VV + L N + + GR Sbjct 278 NLSQSQRERLVHRFRDGKIKLVVATDIAARGLDVNNLSHVVNFDLPDNAETYIHRIGRTG 337 Query 473 RADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK-IRDLQQ 527 RA ++ A E + R L+ ++E ++Q + ++++ +AK I LQ+ Sbjct 338 RAGKTGKAIALVE---PIDRRLLR-SIENRLKQQIEVCTIPNRSQVEAKRIEKLQE 389 >sp|Q4I7K4|DED1_GIBZE ATP-dependent RNA helicase DED1 OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=DED1 PE=3 SV=1 Length=675 Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/130 (32%), Positives = 63/130 (48%), Gaps = 20/130 (15%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQ 428 +IF T++ A SL + LI + S H TQR+++ ++ F+ Sbjct 449 LIFVETKRMADSL----------------SDFLINQNFPATSIHGDRTQRERERALEFFR 492 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA-DQSVYAFVATEG 486 +G +LVAT+VA GLDIPH V+ Y L T+ V GR RA + + G Sbjct 493 NGRCPILVATAVAARGLDIPHVTHVINYDLPTDVDDYVHRIGRTGRAGNTGIATAFFNRG 552 Query 487 SRELKRELIN 496 +R + REL++ Sbjct 553 NRGIVRELMD 562 >sp|Q54TJ4|DDX27_DICDI Probable ATP-dependent RNA helicase ddx27 OS=Dictyostelium discoideum OX=44689 GN=ddx27 PE=3 SV=1 Length=783 Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 72/141 (51%), Gaps = 18/141 (13%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 IIF R+++ H L + GL D++A L G +++Q + + +Q+F+DG Sbjct 440 IIFCRSKKEVHRLRIIF----GLS--DLKAAELHG--------NLSQEQRFDSLQQFRDG 485 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGRARADQSVYAFVATEGS 487 +N L+A+ VA GLDI V+ Y + + N I V RA D +F+ T+ Sbjct 486 QVNYLLASDVASRGLDIIGVKTVINYNMPNNMANYIHRVGRTARAGMDGKSCSFI-TDND 544 Query 488 RELKRELINEALETLMEQAVA 508 R+L ++++ +A ++V+ Sbjct 545 RKLLKDIVTKARNKAKSRSVS 565 >sp|Q0UWA6|DED1_PHANO ATP-dependent RNA helicase DED1 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) OX=321614 GN=DED1 PE=3 SV=1 Length=696 Score = 53.5 bits (127), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 41/130 (32%), Positives = 64/130 (49%), Gaps = 20/130 (15%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQ 428 +IF T++ A SL + LI G + S H TQR++++ ++ F+ Sbjct 464 LIFVETKRMADSL----------------SDFLINQGFPATSIHGDRTQREREKALEMFR 507 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA-DQSVYAFVATEG 486 G +LVAT+VA GLDIP+ VV Y L T+ V GR RA + + G Sbjct 508 SGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRG 567 Query 487 SRELKRELIN 496 +R + R+L++ Sbjct 568 NRGVVRDLLD 577 >sp|Q6CQX2|MPH1_KLULA ATP-dependent DNA helicase MPH1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=MPH1 PE=3 SV=2 Length=1002 Score = 53.5 bits (127), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 0/68 (0%) Query 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 G+ +Q + M Q+ Q++VI F+ G N+LV TS+ EEGLDI ++++ + ++ I Sbjct 555 GSSEEAQLSGMNQKQQKKVISDFKKGIYNVLVCTSIGEEGLDIGEVDLIICFDSTSSPIK 614 Query 465 MVQARGRA 472 +Q GR Sbjct 615 NIQRMGRT 622 Score = 37.7 bits (86), Expect = 0.44, Method: Compositional matrix adjust. Identities = 41/183 (22%), Positives = 84/183 (46%), Gaps = 23/183 (13%) Query 2 ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVT 61 E+R YQ++++ AL +N++ +PTG GKT A+ V + +K++ LV Sbjct 100 EVRQYQYDIVRCAL-FENVLCAIPTGTGKTFIASTVMLNYYRWTKSSKIIFTAPTRPLVA 158 Query 62 QHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAEL----LQMALTSPEEE 117 Q + + ++ T + D R + + + T ++ L+ + +P++ Sbjct 159 QQIKACLGITGIPYSDTAILLDKS-RKNREEIWQQKRVFFTTPQVVENDLKRGVLNPKD- 216 Query 118 EHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASK 177 L+V+DE H + Y V ++++++ R ++L LTA+P A+ Sbjct 217 -------VVLLVIDEAHRARGNYAY-VELTKFID----RFNTSYRLLALTATP----AAD 260 Query 178 LDG 180 L+G Sbjct 261 LEG 263 >sp|P0CR00|RRP3_CRYNJ ATP-dependent rRNA helicase RRP3 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=RRP3 PE=3 SV=1 Length=484 Score = 53.1 bits (126), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 41/121 (34%), Positives = 60/121 (50%), Gaps = 18/121 (15%) Query 358 LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ 417 L + SSS+ +IFTRT + L + L++ G + + Q MTQ Sbjct 271 LANELSSSSM---MIFTRTVADSQRLSIILRRL-GFPAIPLHGQ-------------MTQ 313 Query 418 RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQ 476 + + KF+ G ++LVAT VA GLDIP ++V+ Y + TN V GR ARA + Sbjct 314 SLRLASLNKFKSGGRSILVATDVASRGLDIPLVDLVINYDMPTNSKDYVHRVGRTARAGR 373 Query 477 S 477 S Sbjct 374 S 374 >sp|P0CR01|RRP3_CRYNB ATP-dependent rRNA helicase RRP3 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=RRP3 PE=3 SV=1 Length=484 Score = 53.1 bits (126), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 41/121 (34%), Positives = 60/121 (50%), Gaps = 18/121 (15%) Query 358 LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ 417 L + SSS+ +IFTRT + L + L++ G + + Q MTQ Sbjct 271 LANELSSSSM---MIFTRTVADSQRLSIILRRL-GFPAIPLHGQ-------------MTQ 313 Query 418 RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQ 476 + + KF+ G ++LVAT VA GLDIP ++V+ Y + TN V GR ARA + Sbjct 314 SLRLASLNKFKSGGRSILVATDVASRGLDIPLVDLVINYDMPTNSKDYVHRVGRTARAGR 373 Query 477 S 477 S Sbjct 374 S 374 >sp|P21507|SRMB_ECOLI ATP-dependent RNA helicase SrmB OS=Escherichia coli (strain K12) OX=83333 GN=srmB PE=1 SV=1 Length=444 Score = 53.1 bits (126), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 38/137 (28%), Positives = 58/137 (42%), Gaps = 15/137 (11%) Query 351 LEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSS 410 LE +L + R I+F R R+ H L WL++ G N Sbjct 232 LEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREA--------------GINNCY 277 Query 411 QSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARG 470 M Q + E I++ +G +N+LVAT VA G+DIP + V + + + + + G Sbjct 278 LEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIG 337 Query 471 R-ARADQSVYAFVATEG 486 R ARA + A E Sbjct 338 RTARAGRKGTAISLVEA 354 >sp|Q6BQ61|RRP3_DEBHA ATP-dependent rRNA helicase RRP3 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=RRP3 PE=3 SV=2 Length=477 Score = 52.8 bits (125), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 39/109 (36%), Positives = 54/109 (50%), Gaps = 17/109 (16%) Query 371 IIFTRTRQSAHS-LLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD 429 IIFTRT AHS L + G V + QL TQ + + KF+ Sbjct 308 IIFTRT--CAHSQRTALLARILGFSAVPLHGQL-------------TQAQRLGSLNKFKA 352 Query 430 GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQS 477 G N+L+AT VA GLDIP ++V+ Y + T+ + + GR ARA +S Sbjct 353 GKANILIATDVAARGLDIPSVDIVINYDIPTDSKAYIHRVGRTARAGKS 401 >sp|A6QRQ7|RRP3_AJECN ATP-dependent rRNA helicase RRP3 OS=Ajellomyces capsulatus (strain NAm1 / WU24) OX=2059318 GN=RRP3 PE=3 SV=1 Length=485 Score = 52.8 bits (125), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 37/113 (33%), Positives = 59/113 (52%), Gaps = 15/113 (13%) Query 370 GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD 429 I+FTRT L + L+ G ++ + QL SQS+ + + KF+ Sbjct 302 AIVFTRTVNETQRLAILLRAL-GFGSIPLHGQL-------SQSSRLG------ALSKFRS 347 Query 430 GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF 481 + ++LVAT VA GLDIP +VV+ + L ++ + + GR ARA +S +AF Sbjct 348 RSRDILVATDVAARGLDIPSVDVVLNFDLPSDSKTYIHRVGRTARAGKSGHAF 400 >sp|Q54VT4|DDX47_DICDI Probable ATP-dependent RNA helicase ddx47 OS=Dictyostelium discoideum OX=44689 GN=ddx47 PE=3 SV=1 Length=546 Score = 52.8 bits (125), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 37/108 (34%), Positives = 52/108 (48%), Gaps = 15/108 (14%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 IIFT T S+ + + L+ +G G + M Q + + KF+ G Sbjct 362 IIFTSTCASSTKIAMMLRN--------------LGFGAIPINGDMDQGKRLASLNKFKQG 407 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQS 477 T ++LVAT VA GLDIP ++V+ Y + TN V GR ARA S Sbjct 408 TKSILVATDVAARGLDIPSVDLVINYDVPTNSKEYVHRVGRTARAGNS 455 >sp|A0A1D6LAB7|RH3B_MAIZE DEAD-box ATP-dependent RNA helicase 3B, chloroplastic OS=Zea mays OX=4577 GN=RH3B PE=2 SV=1 Length=743 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/160 (26%), Positives = 76/160 (48%), Gaps = 32/160 (20%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 I+FTRT++ A + L L T I ++ L G ++Q ++ + F+ G Sbjct 339 IVFTRTKKDADEVSLAL-------TNSIASEALHG--------DISQHQRERTLNGFRQG 383 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR----ARADQSVYAFVATEG 486 +LVAT VA GLDIP+ ++++ Y L + + V GR +A ++ F +++ Sbjct 384 KFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTSSQK 443 Query 487 S--RELKREL-----------INEALETLMEQAVAAVQKM 513 + L+R++ I E LE+ E +A ++ + Sbjct 444 RTVKSLERDVGCNFEFISPPSIEEVLESSAEHVIATLRGV 483 >sp|Q1E1N5|RRP3_COCIM ATP-dependent rRNA helicase RRP3 OS=Coccidioides immitis (strain RS) OX=246410 GN=RRP3 PE=3 SV=1 Length=474 Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/112 (35%), Positives = 56/112 (50%), Gaps = 15/112 (13%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 IIFTRT L + L+ G + + QL SQS + + KF+ Sbjct 292 IIFTRTVNETQRLAILLRAL-GFGAIPLHGQL-------SQSARLG------ALGKFRSR 337 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF 481 + N+LVAT VA GLDIP ++V+ Y L ++ + + GR ARA +S AF Sbjct 338 SRNILVATDVAARGLDIPSVDLVLNYDLPSDSKTYIHRVGRTARAGKSGRAF 389 >sp|A5DQF1|RRP3_PICGU ATP-dependent rRNA helicase RRP3 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=RRP3 PE=3 SV=2 Length=475 Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/109 (35%), Positives = 54/109 (50%), Gaps = 17/109 (16%) Query 371 IIFTRTRQSAHS-LLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD 429 I+FTRT AH+ L + G V + QL TQ + + KF+ Sbjct 307 IVFTRT--CAHTQRSTLLARILGFSAVPLHGQL-------------TQSQRLGSLNKFKS 351 Query 430 GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQS 477 G N+L+AT VA GLDIP +VV+ Y + T+ + + GR ARA +S Sbjct 352 GKANILIATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGKS 400 >sp|A0A1D6GDY8|RH3A_MAIZE DEAD-box ATP-dependent RNA helicase 3A, chloroplastic OS=Zea mays OX=4577 GN=RH3A PE=3 SV=1 Length=745 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/160 (26%), Positives = 75/160 (47%), Gaps = 32/160 (20%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 I+FTRT++ A + L L T I ++ L G ++Q ++ + F+ G Sbjct 339 IVFTRTKKDADEVSLAL-------TTSIASEALHG--------DISQHQRERTLNGFRQG 383 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR----ARADQSVYAFVATEG 486 +LVAT VA GLDIP+ ++++ Y L + + V GR +A ++ F +++ Sbjct 384 KFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTSSQK 443 Query 487 SR--ELKREL-----------INEALETLMEQAVAAVQKM 513 L+R++ I E LE+ E +A ++ + Sbjct 444 RTVMSLERDVGCKFEFISPPSIEEVLESSAEHVIATLRGV 483 >sp|Q6CH58|RRP3_YARLI ATP-dependent rRNA helicase RRP3 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=RRP3 PE=3 SV=1 Length=480 Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 18/112 (16%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 IIF RT+ + L L+ +G G ++Q + + KF+ G Sbjct 307 IIFARTKSDTQRISLLLRN--------------LGYGAIPLHGDLSQTARLGALNKFKSG 352 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR----ARADQSV 478 + N+L+AT VA GLDIP ++V+ Y + ++ S + GR RA +SV Sbjct 353 SRNILIATDVASRGLDIPAVDLVINYDIPSDSKSYIHRVGRTARAGRAGKSV 404 >sp|Q2HBE7|DED1_CHAGB ATP-dependent RNA helicase DED1 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=DED1 PE=3 SV=1 Length=688 Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/130 (31%), Positives = 63/130 (48%), Gaps = 20/130 (15%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQ 428 +IF T++ A SL + LI + S H TQR+++ ++ F+ Sbjct 460 LIFVETKRMADSL----------------SDFLINQNFPATSIHGDRTQRERERALELFR 503 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA-DQSVYAFVATEG 486 +G +LVAT+VA GLDIP+ V+ Y L T+ V GR RA + + G Sbjct 504 NGKCPILVATAVAARGLDIPNVTHVINYDLPTDVDDYVHRIGRTGRAGNTGIATAFFNRG 563 Query 487 SRELKRELIN 496 +R + REL++ Sbjct 564 NRGIVRELLD 573 >sp|A7EJY3|DED1_SCLS1 ATP-dependent RNA helicase ded1 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 GN=ded1 PE=3 SV=1 Length=678 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/129 (32%), Positives = 62/129 (48%), Gaps = 20/129 (16%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQ 428 +IF T++ A SL + LI + S H TQR+++ ++ F+ Sbjct 449 LIFVETKRMADSL----------------SDFLINQNFPATSIHGDRTQRERERALEMFR 492 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA-DQSVYAFVATEG 486 +G +LVAT+VA GLDIP+ VV Y L T+ V GR RA + + G Sbjct 493 NGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGISTAFFNRG 552 Query 487 SRELKRELI 495 +R + R+LI Sbjct 553 NRGVVRDLI 561 >sp|Q5JKF2|RH40_ORYSJ DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0549400 PE=2 SV=2 Length=792 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/142 (31%), Positives = 66/142 (46%), Gaps = 21/142 (15%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 KL LE+IL+ Q S S + +IF T++ L L +Q G + G+ Sbjct 381 KLRRLEQILRSQDSGS---KVLIFCTTKRMCDQLARTLTRQFGASAI---------HGDK 428 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT---NEISMV 466 SQS ++++V+ F+ G +LVAT VA GLDI VV+ Y T + + + Sbjct 429 SQS------EREKVLSHFRSGRSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRI 482 Query 467 QARGRARADQSVYAFVATEGSR 488 GRA A Y F + S+ Sbjct 483 GRTGRAGATGVAYTFFCDQDSK 504 >sp|Q0D8N0|RH53_ORYSJ DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0143700 PE=2 SV=2 Length=602 Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/119 (29%), Positives = 56/119 (47%), Gaps = 16/119 (13%) Query 365 SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI 424 +N + I+FT+T++ A L + + Q + ++Q ++ + Sbjct 326 ANGGKCIVFTQTKREADRLAYAMGRSYACQAL---------------HGDISQNQRERTL 370 Query 425 QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFV 482 F+DG N+LVAT VA GLDIP+ ++V+ Y L V GR ARA + A + Sbjct 371 SGFRDGRFNILVATDVAARGLDIPNVDLVIHYELPNTSELFVHRSGRTARAGKKGSAIL 429 >sp|A6SEH9|DED1_BOTFB ATP-dependent RNA helicase ded1 OS=Botryotinia fuckeliana (strain B05.10) OX=332648 GN=ded1 PE=3 SV=1 Length=683 Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/145 (30%), Positives = 68/145 (47%), Gaps = 26/145 (18%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQ 428 +IF T++ A SL + LI + S H TQR+++ ++ F+ Sbjct 449 LIFVETKRMADSL----------------SDFLINQNFPATSIHGDRTQRERERALEMFR 492 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA-DQSVYAFVATEG 486 +G +LVAT+VA GLDIP+ VV Y L T+ V GR RA + + G Sbjct 493 NGRCPILVATAVAARGLDIPNVKHVVNYDLPTDIDDYVHRIGRTGRAGNTGISTAFFNRG 552 Query 487 SRELKRELI------NEALETLMEQ 505 +R + R+LI N+ + + +E Sbjct 553 NRGVCRDLIELLKEANQEIPSFLEN 577 >sp|Q9P6U9|DED1_NEUCR ATP-dependent RNA helicase ded1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=drh-9 PE=3 SV=1 Length=688 Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/137 (31%), Positives = 64/137 (47%), Gaps = 22/137 (16%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQ 428 +IF T++ A SL + LI + S H TQR+++ ++ F+ Sbjct 457 LIFVETKRMADSL----------------SDFLINQNFPATSIHGDRTQRERERALEMFR 500 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGS 487 +G +LVAT+VA GLDIP+ V+ Y L T+ V GR RA + +AT Sbjct 501 NGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTG---IATAFF 557 Query 488 RELKRELINEALETLME 504 R ++ E LE L E Sbjct 558 NRGNRGVVRELLELLKE 574 >sp|A4RHF1|DED1_PYRO7 ATP-dependent RNA helicase DED1 OS=Pyricularia oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 GN=DED1 PE=3 SV=2 Length=671 Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 62/129 (48%), Gaps = 17/129 (13%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 +IF T+++A L +LQ Q L I TQR+++ ++ F+ G Sbjct 453 LIFVETKRNADELSDFLQNQN-LPATSIHGD-------------RTQRERERALEMFRTG 498 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQS--VYAFVATEGS 487 +LVAT+VA GLDIP+ V+ Y L T+ V GR RA + AF + + Sbjct 499 RCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFDMKDN 558 Query 488 RELKRELIN 496 + +EL+N Sbjct 559 SGVAQELLN 567 >sp|Q4IFI0|RRP3_GIBZE ATP-dependent rRNA helicase RRP3 OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=RRP3 PE=3 SV=1 Length=486 Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/112 (35%), Positives = 56/112 (50%), Gaps = 15/112 (13%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 I+FTRT +W Q+ V I + L G G ++Q + + KF+ G Sbjct 304 IVFTRT--------VWETQR-----VSILLRTL-GFGAIPLHGQLSQSSRLGALNKFRSG 349 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF 481 T ++LVAT VA GLDIP +VV+ Y L + + + GR ARA +S A Sbjct 350 TRDILVATDVAARGLDIPSVDVVLNYDLPQDSKTYIHRVGRTARAGKSGVAI 401 >sp|Q0DB53|RH52A_ORYSJ DEAD-box ATP-dependent RNA helicase 52A OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0602400 PE=2 SV=2 Length=602 Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/163 (29%), Positives = 73/163 (45%), Gaps = 26/163 (16%) Query 347 ENPKLEMLEKILQRQ-FSSSNS----PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQ 401 + K L +LQRQ +NS P ++F T++ A SL WL + G I Sbjct 326 DGEKRGYLLDLLQRQSVGVANSKLQQPLTLVFVETKREADSLRYWLYSK-GFPATAIHGD 384 Query 402 LLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL--- 458 TQ++++ ++ F+ G ++VAT VA GLD+P+ V+ Y L Sbjct 385 -------------RTQQERESALRSFKTGLTPIMVATDVASRGLDVPNVAHVINYDLPKS 431 Query 459 LTNEISMVQARGRARADQSVYAFVATEGSRELKR---ELINEA 498 + + + + GRA S AF TE L + EL+ EA Sbjct 432 IEDYVHRIGRTGRAGKAGSATAFF-TESDHSLAKGLLELMTEA 473 >sp|A7EML8|RRP3_SCLS1 ATP-dependent rRNA helicase rrp3 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 GN=rrp3 PE=3 SV=1 Length=482 Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 15/112 (13%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 IIFTRT + + L+ G + + QL SQS+ + + KF+ G Sbjct 300 IIFTRTVNETQRIAILLRTL-GFGAIPLHGQL-------SQSSRLG------ALNKFRAG 345 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF 481 + +LVAT VA GLDIP +VV+ Y + + + + GR ARA +S +A Sbjct 346 SREILVATDVAARGLDIPSVDVVLNYDMPQDSKTYIHRVGRTARAGKSGHAI 397 >sp|Q5ACU6|RRP3_CANAL ATP-dependent rRNA helicase RRP3 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=RRP3 PE=3 SV=3 Length=534 Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 53/108 (49%), Gaps = 15/108 (14%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 I+FTRT A L L + G V + QL SQS + + KF+ Sbjct 361 IVFTRTVAHAQRTAL-LARILGFNAVPLHGQL-------SQSQRLGS------LNKFKSN 406 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQS 477 N+LVAT VA GLDIP +VV+ Y + T+ + + GR ARA +S Sbjct 407 QANILVATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRS 454 >sp|Q4P3U9|RRP3_USTMA ATP-dependent rRNA helicase RRP3 OS=Ustilago maydis (strain 521 / FGSC 9021) OX=237631 GN=RRP3 PE=3 SV=2 Length=561 Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 54/108 (50%), Gaps = 15/108 (14%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 I+FTRT + L + L+ G + + QL +Q+ + + KF+ G Sbjct 357 IVFTRTVHDSQRLSILLRLL-GFPAIPLHGQL-------------SQQARLGALNKFKTG 402 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQS 477 ++LVAT VA GLDIP ++VV Y + TN + GR ARA +S Sbjct 403 GRSILVATDVASRGLDIPAVDLVVNYDIPTNSKDYIHRVGRTARAGRS 450 >sp|P19109|DDX17_DROME ATP-dependent RNA helicase p62 OS=Drosophila melanogaster OX=7227 GN=Rm62 PE=1 SV=3 Length=719 Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 82/173 (47%), Gaps = 27/173 (16%) Query 347 ENPKLEMLEKILQRQFSSSNSP-RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 E K E L+ +L + +S SP + IIF T++ +L+ +++ + +R + Sbjct 509 EFSKEEKLKTLLSDIYDTSESPGKIIIFVETKRRVDNLVRFIR------SFGVRCGAI-- 560 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE--- 462 G+ SQS +RD V+++F+ G N+LVAT VA GLD+ V+ + N Sbjct 561 HGDKSQS----ERD--FVLREFRSGKSNILVATDVAARGLDVDGIKYVINFDYPQNSEDY 614 Query 463 ISMVQARGRARADQSVYAFVATEGSRELK------REL---INEALETLMEQA 506 I + GR+ + +AF +++ K RE IN ALE L + Sbjct 615 IHRIGRTGRSNTKGTSFAFFTKNNAKQAKALVDVLREANQEINPALENLARNS 667 >sp|Q15N18|RHLB_PSEA6 ATP-dependent RNA helicase RhlB OS=Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087) OX=3042615 GN=rhlB PE=3 SV=1 Length=421 Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 52/182 (29%), Positives = 77/182 (42%), Gaps = 29/182 (16%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 + I+F T+ S + WLQ R LL G + Q + ++++ F Sbjct 255 KAIVFANTKHSCEKVADWLQADGH------RVGLLSG--------DVPQNKRLKILEDFT 300 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGS 487 G L++LVAT VA GL IP + V Y L + V GR RA QS + S Sbjct 301 SGKLDILVATDVAARGLHIPMVSHVFNYDLPDDAEDYVHRIGRTGRAGQS-----GSSIS 355 Query 488 RELKRELIN-EALETLMEQAVAAVQKMDQAEYQAK--IRDLQQAALTKRAAQAAQRENQR 544 +R +N A+ET +E A+ EYQA +RD+ + R Q+ Sbjct 356 FACERYALNLPAIETYIEHAIPVT------EYQADALLRDVTPPKPRHKKRMQNGRNPQK 409 Query 545 QQ 546 +Q Sbjct 410 RQ 411 >sp|Q1DJF0|DED1_COCIM ATP-dependent RNA helicase DED1 OS=Coccidioides immitis (strain RS) OX=246410 GN=DED1 PE=3 SV=2 Length=665 Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 64/130 (49%), Gaps = 22/130 (17%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQ 428 +IF T++ A SL ++ LI + + H TQR+++ ++ F+ Sbjct 446 LIFVETKRMADSL----------------SEFLINQNFPATAIHGDRTQRERERALEYFR 489 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQS--VYAFVATE 485 +G +LVAT+VA GLDIP+ VV Y L T+ V GR RA + AF Sbjct 490 NGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGLSTAFF-NR 548 Query 486 GSRELKRELI 495 G+R + R+LI Sbjct 549 GNRGVVRDLI 558 >sp|A6RW56|RRP3_BOTFB ATP-dependent rRNA helicase rrp3 OS=Botryotinia fuckeliana (strain B05.10) OX=332648 GN=rrp3 PE=3 SV=1 Length=486 Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 15/112 (13%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 IIFTRT + + L+ G + + QL SQS+ + + KF+ G Sbjct 304 IIFTRTVNETQRIAILLRTL-GFGAIPLHGQL-------SQSSRLG------ALNKFRAG 349 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF 481 + +LVAT VA GLDIP +VV+ Y + + + + GR ARA +S +A Sbjct 350 SREILVATDVAARGLDIPSVDVVLNYDVPQDSKTYIHRVGRTARAGKSGHAI 401 >sp|A1CXK7|DED1_NEOFI ATP-dependent RNA helicase ded1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=ded1 PE=3 SV=1 Length=676 Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/83 (37%), Positives = 47/83 (57%), Gaps = 2/83 (2%) Query 416 TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA 474 TQR+++ ++ F+ G +LVAT+VA GLDIP+ V+ Y L T+ V GR RA Sbjct 487 TQRERERALEMFRSGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRA 546 Query 475 -DQSVYAFVATEGSRELKRELIN 496 + + G+R + RELI+ Sbjct 547 GNTGIATAFFNRGNRGVVRELID 569 >sp|Q9LUW6|RH9_ARATH DEAD-box ATP-dependent RNA helicase 9, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RH9 PE=1 SV=1 Length=610 Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/101 (30%), Positives = 51/101 (50%), Gaps = 15/101 (15%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 I+FT+T++ A L L + + + L G ++Q ++ + F+DG Sbjct 365 IVFTQTKRDADRLAFGLAKS-------YKCEALHG--------DISQAQRERTLAGFRDG 409 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 ++LVAT VA GLD+P+ ++V+ Y L N + V GR Sbjct 410 NFSILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGR 450 >sp|A2RB17|RRP3_ASPNC ATP-dependent rRNA helicase rrp3 OS=Aspergillus niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) OX=425011 GN=rrp3 PE=3 SV=1 Length=467 Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 43/116 (37%), Positives = 57/116 (49%), Gaps = 17/116 (15%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 IIFTRT L +L + G + + QL SQS + + KF+ Sbjct 292 IIFTRTVNETQRLA-FLLRALGFGAIPLHGQL-------SQSARLG------ALGKFRAR 337 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYA--FVA 483 + N+LVAT VA GLDIP +VV+ + L + S V GR ARA +S A FVA Sbjct 338 SRNILVATDVAARGLDIPSVDVVLNFDLPGDSPSYVHRVGRTARAGKSGLAISFVA 393 >sp|Q9LUW5|RH53_ARATH DEAD-box ATP-dependent RNA helicase 53, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RH53 PE=1 SV=1 Length=616 Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/101 (30%), Positives = 51/101 (50%), Gaps = 15/101 (15%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 I+FT+T++ A L L + + + L G ++Q ++ + F+DG Sbjct 353 IVFTQTKRDADRLSYALARS-------FKCEALHG--------DISQSQRERTLAGFRDG 397 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 N+LVAT VA GLD+P+ ++++ Y L N + V GR Sbjct 398 HFNILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGR 438 >sp|A8F0V9|UVRB_RICM5 UvrABC system protein B OS=Rickettsia massiliae (strain Mtu5) OX=416276 GN=uvrB PE=3 SV=1 Length=661 Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 30/109 (28%), Positives = 56/109 (51%), Gaps = 19/109 (17%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 R ++ T T++ A L +LQ+ + S +H+ ++ E+++ + Sbjct 447 RVLVTTLTKKMAEDLTAYLQE--------------LKYKTSYLHSHVHTLERIEILRDLR 492 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 GT+++LV ++ EGLDIP C +V + G L +E+S++Q GRA Sbjct 493 QGTIDILVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGRA 541 >sp|A8EXS6|UVRB_RICCK UvrABC system protein B OS=Rickettsia canadensis (strain McKiel) OX=293613 GN=uvrB PE=3 SV=1 Length=661 Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 19/109 (17%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 R ++ T T++ A L +LQ+ L + + H +R E+++ + Sbjct 447 RVLVTTLTKKMAEDLTTYLQE------------LKYKSSYLHSNVHTLER--LEILRDLR 492 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 GT+N+LV ++ EGLDIP C +V + G L +E+S++Q GRA Sbjct 493 QGTINILVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGRA 541 >sp|A2QI25|DED1_ASPNC ATP-dependent RNA helicase ded1 OS=Aspergillus niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) OX=425011 GN=ded1 PE=3 SV=1 Length=678 Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 63/128 (49%), Gaps = 16/128 (13%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 +IF T++ A SL +L Q+ A + G TQR+++ ++ F+ G Sbjct 453 LIFVETKRMADSLSDFLLNQR------FPATAIHG--------DRTQRERERALEMFRSG 498 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA-DQSVYAFVATEGSR 488 +LVAT+VA GLDIP+ V+ Y L T+ V GR RA + + G+R Sbjct 499 RCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNR 558 Query 489 ELKRELIN 496 + R+LI+ Sbjct 559 GVVRDLID 566 >sp|Q0CLJ6|DED1_ASPTN ATP-dependent RNA helicase ded1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=ded1 PE=3 SV=1 Length=674 Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 63/128 (49%), Gaps = 16/128 (13%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 +IF T++ A SL +L Q+ A + G TQR+++ ++ F+ G Sbjct 452 LIFVETKRMADSLSDFLLNQR------FPATAIHG--------DRTQRERERALEMFRSG 497 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA-DQSVYAFVATEGSR 488 +LVAT+VA GLDIP+ V+ Y L T+ V GR RA + + G+R Sbjct 498 RCPILVATAVAASGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNR 557 Query 489 ELKRELIN 496 + R+LI+ Sbjct 558 GVVRDLID 565 >sp|P23394|PRP28_YEAST Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=PRP28 PE=1 SV=2 Length=588 Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 36/130 (28%), Positives = 66/130 (51%), Gaps = 16/130 (12%) Query 368 PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF 427 P IIF +Q+A WL ++ +T +++ +L G+ + Q H +Q F Sbjct 437 PPIIIFINYKQTAD----WLAEKFQKET-NMKVTILHGSKSQEQREHS--------LQLF 483 Query 428 QDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGRARADQSVYAFVAT 484 + + +++AT+VA GLDIP+ ++VV + + + + I + GRA + + +FV+ Sbjct 484 RTNKVQIMIATNVAARGLDIPNVSLVVNFQISKKMDDYIHRIGRTGRAANEGTAVSFVSA 543 Query 485 EGSRELKREL 494 L REL Sbjct 544 AEDESLIREL 553 >sp|Q2UGK3|DED1_ASPOR ATP-dependent RNA helicase ded1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=ded1 PE=3 SV=1 Length=675 Score = 50.1 bits (118), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 63/128 (49%), Gaps = 16/128 (13%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 +IF T++ A SL +L Q+ A + G TQR+++ ++ F+ G Sbjct 452 LIFVETKRMADSLSDFLLNQR------FPATAIHG--------DRTQRERERALEMFRSG 497 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA-DQSVYAFVATEGSR 488 +LVAT+VA GLDIP+ V+ Y L T+ V GR RA + + G+R Sbjct 498 RCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNR 557 Query 489 ELKRELIN 496 + R+LI+ Sbjct 558 GVVRDLID 565 >sp|Q0DM51|RH3_ORYSJ DEAD-box ATP-dependent RNA helicase 3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0827700 PE=2 SV=2 Length=758 Score = 50.1 bits (118), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 75/160 (47%), Gaps = 32/160 (20%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 I+FT+T++ A + L L T I ++ L G ++Q ++ + F+ G Sbjct 355 IVFTKTKRDADEVSLAL-------TNSIASEALHG--------DISQHQRERTLNGFRQG 399 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGS-- 487 +LVAT VA GLDIP+ ++++ Y L + + V GR RA ++ A + S Sbjct 400 KFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTNSQR 459 Query 488 ---RELKREL-----------INEALETLMEQAVAAVQKM 513 R L+R++ I + LE+ E +A ++ + Sbjct 460 RTVRSLERDVGCRFDFISPPAIEDVLESSAEHVIATLRGV 499 >sp|Q9C551|RH5_ARATH DEAD-box ATP-dependent RNA helicase 5 OS=Arabidopsis thaliana OX=3702 GN=RH5 PE=1 SV=1 Length=537 Score = 49.7 bits (117), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 45/142 (32%), Positives = 67/142 (47%), Gaps = 18/142 (13%) Query 358 LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ 417 L ++ S R ++F + A L +LQQ+ G + V I GN +QS Sbjct 357 LLEKYHKSQKNRVLVFALYKVEAERLERFLQQR-GWKAVSIH-------GNKAQS----- 403 Query 418 RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL-LTNE--ISMVQARGRARA 474 ++ + F++G+ LLVAT VA GLDIP VV+ Y LT E + + GRA Sbjct 404 -ERTRSLSLFKEGSCPLLVATDVAARGLDIPDVEVVINYTFPLTTEDYVHRIGRTGRAGK 462 Query 475 DQSVYAFVATEGSRELKRELIN 496 + F T ++ L EL+N Sbjct 463 KGVAHTFF-TPLNKGLAGELVN 483 >sp|C8V8H4|DED1_EMENI ATP-dependent RNA helicase ded1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=ded1 PE=3 SV=1 Length=668 Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 47/83 (57%), Gaps = 2/83 (2%) Query 416 TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA 474 TQR+++ ++ F+ G +LVAT+VA GLDIP+ V+ Y L T+ V GR RA Sbjct 481 TQRERERALEMFRSGRYPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRA 540 Query 475 -DQSVYAFVATEGSRELKRELIN 496 + + G+R + R+LI+ Sbjct 541 GNTGIATAFFNRGNRGVVRDLID 563 >sp|Q7L014|DDX46_HUMAN Probable ATP-dependent RNA helicase DDX46 OS=Homo sapiens OX=9606 GN=DDX46 PE=1 SV=2 Length=1031 Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 55/108 (51%), Gaps = 6/108 (6%) Query 378 QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLL 435 Q + S+++++ +Q+ D + L+ A S H + Q D+ +I F++GT LL Sbjct 617 QESGSVIIFVDKQE---HADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLL 673 Query 436 VATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFV 482 VATSVA GLD+ H +VV Y + V GR RA YA+ Sbjct 674 VATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYT 721 >sp|Q5R6D8|DDX46_PONAB Probable ATP-dependent RNA helicase DDX46 OS=Pongo abelii OX=9601 GN=DDX46 PE=2 SV=1 Length=1032 Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 55/108 (51%), Gaps = 6/108 (6%) Query 378 QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLL 435 Q + S+++++ +Q+ D + L+ A S H + Q D+ +I F++GT LL Sbjct 617 QESGSVIIFVDKQE---HADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLL 673 Query 436 VATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFV 482 VATSVA GLD+ H +VV Y + V GR RA YA+ Sbjct 674 VATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYT 721 >sp|Q569Z5|DDX46_MOUSE Probable ATP-dependent RNA helicase DDX46 OS=Mus musculus OX=10090 GN=Ddx46 PE=1 SV=2 Length=1032 Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 55/108 (51%), Gaps = 6/108 (6%) Query 378 QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLL 435 Q + S+++++ +Q+ D + L+ A S H + Q D+ +I F++GT LL Sbjct 617 QESGSVIIFVDKQE---HADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLL 673 Query 436 VATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFV 482 VATSVA GLD+ H +VV Y + V GR RA YA+ Sbjct 674 VATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYT 721 >sp|Q970I2|XPB2_SULTO DNA 3'-5' translocase XPB2 OS=Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) OX=273063 GN=xpb2 PE=1 SV=1 Length=439 Score = 49.7 bits (117), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 54/172 (31%), Positives = 75/172 (44%), Gaps = 37/172 (22%) Query 1 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKV--VVLVNRVH 58 +ELR YQ E + L+ K II LPTGAGKT+ A L+ V KV +++V + Sbjct 67 IELRDYQAEAVKAWLKEKRGIIVLPTGAGKTQVA-------LKIVSIMKVATLIVVPTID 119 Query 59 LVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEE 118 L+TQ E + L D P G + + T + A T EE Sbjct 120 LITQWKERINKYL-----------DFDPGIIGGGEDSLKGITVITYD---SAYTRAEELG 165 Query 119 HVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASP 170 + F L++ DE HH + Y+ IM+Q P LGLTA+P Sbjct 166 N----KFPLLIFDEVHHLPSEG-YS-IMAQLF--------ASPYRLGLTATP 203 Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/146 (28%), Positives = 67/146 (46%), Gaps = 31/146 (21%) Query 333 DRKNELAHLATHGPEN------PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLW 386 D++ A LA H N K+E L +ILQ + + I+FTR Q A+ Sbjct 288 DKEAREALLAWHESLNIAVNSQSKIEKLREILQ----EYKNEKIIVFTRDTQMAYR---- 339 Query 387 LQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ-QEVIQKFQDGTLNLLVATSVAEEGL 445 I LI T+ T +D+ +E++QKF+DG ++VA++V +EG+ Sbjct 340 -----------ISKTFLIPV-----VTYKTDKDEREEILQKFRDGEYRVIVASTVFDEGV 383 Query 446 DIPHCNVVVRYGLLTNEISMVQARGR 471 D+P + + G + +Q GR Sbjct 384 DVPDATLAIVMGGYGTKRQFLQRLGR 409 >sp|Q756G5|DBP8_EREGS ATP-dependent RNA helicase DBP8 OS=Eremothecium gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=DBP8 PE=3 SV=1 Length=435 Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 66/141 (47%), Gaps = 19/141 (13%) Query 346 PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 PE+ K L ++L + S S I+F SA L L Q ++IR Sbjct 239 PEHVKEAYLYQVLSSEEYKSKS--AIVFVNRTISAEILRRMLMQ------LEIRV----- 285 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465 +S + M QR++ +Q+F+ +L+AT VA GLDIP +VV Y + N + Sbjct 286 ---TSLHSQMPQRERTNSLQRFRANAARVLIATDVASRGLDIPAVQLVVNYDIPANPDTY 342 Query 466 VQARGR-ARADQS--VYAFVA 483 + GR ARA + +F+A Sbjct 343 IHRAGRTARAGRGGEALSFIA 363 >sp|Q9P6N8|RRP3_SCHPO ATP-dependent rRNA helicase rrp3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rrp3 PE=3 SV=1 Length=465 Score = 49.7 bits (117), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 83/171 (49%), Gaps = 15/171 (9%) Query 319 QILCAERRLL---ALFDDRKNELAHLATHGPE----NPKLEMLEKILQRQ--FSSSNSPR 369 +I+ ERR L A + +L + H P + K ++ ++QR F + Sbjct 215 KIIPHERRTLLFSATMTSKVEKLQRASLHQPVRVAVSSKFSTVDTLIQRYLFFPFKHKDT 274 Query 370 GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKF 427 +++ + +S++++ + Q + I LL G S+ H ++Q ++ + KF Sbjct 275 YLVYLVNELAGNSIIIFARTVNDTQRLAI---LLRTLGFSAIPLHGQLSQSNRLGALNKF 331 Query 428 QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQS 477 + G + LVAT VA GLDIP +VV+ Y + T+ + + GR ARA ++ Sbjct 332 KSGARSTLVATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARAGRA 382 >sp|Q62780|DDX46_RAT Probable ATP-dependent RNA helicase DDX46 OS=Rattus norvegicus OX=10116 GN=Ddx46 PE=1 SV=1 Length=1032 Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 55/108 (51%), Gaps = 6/108 (6%) Query 378 QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLL 435 Q + S+++++ +Q+ D + L+ A S H + Q D+ +I F++GT LL Sbjct 617 QESGSVIIFVDKQE---HADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLL 673 Query 436 VATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFV 482 VATSVA GLD+ H +VV Y + V GR RA YA+ Sbjct 674 VATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYT 721 >sp|Q84W89|RH37_ARATH DEAD-box ATP-dependent RNA helicase 37 OS=Arabidopsis thaliana OX=3702 GN=RH37 PE=2 SV=2 Length=633 Score = 49.7 bits (117), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 44/140 (31%), Positives = 66/140 (47%), Gaps = 21/140 (15%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 ++F T++ A SL WL + G +S TQ++++ ++ F+ G Sbjct 422 LVFVETKRGADSLENWL--------------CINGFPATSIHGDRTQQEREVALKAFKSG 467 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQS--VYAFVATEGS 487 +LVAT VA GLDIPH VV + L + V GR RA +S AF +G+ Sbjct 468 RTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFF-NDGN 526 Query 488 RELKR---ELINEALETLME 504 L R EL+ EA + + E Sbjct 527 TSLARPLAELMQEANQEVPE 546 >sp|A8GMJ1|UVRB_RICAH UvrABC system protein B OS=Rickettsia akari (strain Hartford) OX=293614 GN=uvrB PE=3 SV=1 Length=661 Score = 49.7 bits (117), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 36/56 (64%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E++Q + GT+++LV ++ EGLDIP C +V + G L +E+S++Q GRA Sbjct 486 EILQDLRQGTIDILVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGRA 541 >sp|Q6FM43|PRP28_CANGA Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=PRP28 PE=3 SV=1 Length=582 Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 48/168 (29%), Positives = 77/168 (46%), Gaps = 24/168 (14%) Query 331 FDDRKNELAHLATH-GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQ 389 +D K + + H G ++ KL L+ L + N IIF +++A L L L Sbjct 400 WDSDKPLITQVVRHTGDDDKKLSFLKDDLIK-----NGLPAIIFINYKETADWLTLRLSD 454 Query 390 QQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPH 449 + + T+ G+ SQS QR + IQK + GT N+L+AT+VA GLDIP Sbjct 455 RFNIVTL---------HGSKSQS----QR--ESAIQKLKSGTANVLIATNVAARGLDIPD 499 Query 450 CNVVVRYGL---LTNEISMVQARGRARADQSVYAFVATEGSRELKREL 494 +VV + + + I + GRA ++ E +L ++L Sbjct 500 VALVVNFQMSKKFDDYIHRIGRTGRAGKTGIAVTYLTGEEDPQLIKQL 547 >sp|Q8DDN6|RHLB_VIBVU ATP-dependent RNA helicase RhlB OS=Vibrio vulnificus (strain CMCP6) OX=216895 GN=rhlB PE=3 SV=1 Length=435 Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 80/326 (25%), Positives = 130/326 (40%), Gaps = 70/326 (21%) Query 253 FGTQMYEQQVVKL--------SEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALA 304 +G + Y++Q+ KL + +QRV+ L+ + A+++ + R D L Sbjct 119 YGGESYDKQLTKLQGGVDVLIGTTGRIIDFYKQRVFNLNNIQ---AVVLDEADRMFD-LG 174 Query 305 ALQD--FYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPEN----PKLEML 354 ++D F R ++ + RL LF R ELA H PE+ P+ + Sbjct 175 FIKDIRFLFR------RMPAPQERLNMLFSATLSYRVQELAFEHMHNPEHVVVEPEQKTG 228 Query 355 EKILQRQFSSSNSP---------------RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIR 399 +I + F SN R IIF T+ S+ W L R Sbjct 229 HRIQEELFYPSNEDKMALLQTLIEEEWPDRAIIFANTKYKCESI--WAH----LAADGHR 282 Query 400 AQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL- 458 LL G + Q+ +++++++F G+++LLVAT VA GL IP V Y L Sbjct 283 VGLLTG--------DVPQKKREKILEQFTQGSVDLLVATDVAARGLHIPQVTHVFNYDLP 334 Query 459 --LTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQA 516 + + + GRA A +F + + L A+E +E + V D + Sbjct 335 DDCEDYVHRIGRTGRAGASGHSISFACEDYAINLP------AIEEYIEHTI-PVSDYDSS 387 Query 517 EYQAKIRDLQQAALTKRAAQAAQREN 542 A I+DL T A +R N Sbjct 388 ---ALIQDLPAPVRTPSARNQQRRTN 410 >sp|P44586|DEAD_HAEIN ATP-dependent RNA helicase DeaD OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=deaD PE=3 SV=1 Length=613 Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/142 (29%), Positives = 74/142 (52%), Gaps = 19/142 (13%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 IIF RT+ + L++ G +++ + MTQ+ +++ + + ++G Sbjct 248 IIFARTKTGTLDITELLEKN--------------GFRSAALNGDMTQQLREQTLDRLRNG 293 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRE 489 +L+++VAT VA G+DI ++VV Y + + S V GR RA +S A + E RE Sbjct 294 SLDIVVATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVE-PRE 352 Query 490 LKRELINEALETLMEQAVAAVQ 511 +R L N +E LM++ + V+ Sbjct 353 -RRLLRN--IEHLMKKGINEVE 371 >sp|Q7MGP7|RHLB_VIBVY ATP-dependent RNA helicase RhlB OS=Vibrio vulnificus (strain YJ016) OX=196600 GN=rhlB PE=3 SV=1 Length=435 Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 80/326 (25%), Positives = 130/326 (40%), Gaps = 70/326 (21%) Query 253 FGTQMYEQQVVKL--------SEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALA 304 +G + Y++Q+ KL + +QRV+ L+ + A+++ + R D L Sbjct 119 YGGESYDKQLAKLQGGVDVLIGTTGRIIDFYKQRVFNLNNIQ---AVVLDEADRMFD-LG 174 Query 305 ALQD--FYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPEN----PKLEML 354 ++D F R ++ + RL LF R ELA H PE+ P+ + Sbjct 175 FIKDIRFLFR------RMPAPQERLNMLFSATLSYRVQELAFEHMHNPEHVVVEPEQKTG 228 Query 355 EKILQRQFSSSNSP---------------RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIR 399 +I + F SN R IIF T+ S+ W L R Sbjct 229 HRIQEELFYPSNEDKMALLQTLIEEEWPDRAIIFANTKYKCESI--WAH----LAADGHR 282 Query 400 AQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL- 458 LL G + Q+ +++++++F G+++LLVAT VA GL IP V Y L Sbjct 283 VGLLTG--------DVPQKKREKILEQFTQGSVDLLVATDVAARGLHIPQVTHVFNYDLP 334 Query 459 --LTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQA 516 + + + GRA A +F + + L A+E +E + V D + Sbjct 335 DDCEDYVHRIGRTGRAGASGHSISFACEDYAINLP------AIEEYIEHTI-PVSDYDSS 387 Query 517 EYQAKIRDLQQAALTKRAAQAAQREN 542 A I+DL T A +R N Sbjct 388 ---ALIQDLPAPVRTPSARNQQRRTN 410 >sp|Q8L7S8|RH3_ARATH DEAD-box ATP-dependent RNA helicase 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RH3 PE=1 SV=2 Length=748 Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 72/160 (45%), Gaps = 32/160 (20%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 + I+FT+T++ A + L L I + L G ++Q ++ + F+ Sbjct 353 KTIVFTQTKRDADEVSLALSNS-------IATEALHG--------DISQHQRERTLNAFR 397 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGS 487 G +LVAT VA GLDIP+ ++V+ Y L + + V GR RA + A + S Sbjct 398 QGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSS 457 Query 488 -----RELKREL-----------INEALETLMEQAVAAVQ 511 R L+R++ + + LE+ +Q VA + Sbjct 458 QKRTVRSLERDVGCHFEFISPPTVGDLLESSADQVVATLN 497 >sp|Q75HJ0|RH37_ORYSJ DEAD-box ATP-dependent RNA helicase 37 OS=Oryza sativa subsp. japonica OX=39947 GN=PL10A PE=2 SV=1 Length=637 Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 60/134 (45%), Gaps = 21/134 (16%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 ++F T++ A +L WL G I TQ++++ ++ F+ G Sbjct 437 LVFVETKRGADALENWLYTN-GFPATSIHGD-------------RTQQEREYALRSFKSG 482 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGRARADQSVYAFVATEGS 487 +LVAT VA GLDIPH V+ + L + + + + GRA AF EG+ Sbjct 483 ATPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSGLATAFF-NEGN 541 Query 488 RELKR---ELINEA 498 L R EL+ EA Sbjct 542 LSLARPLCELMQEA 555 >sp|Q65RG7|RHLB_MANSM ATP-dependent RNA helicase RhlB OS=Mannheimia succiniciproducens (strain KCTC 0769BP / MBEL55E) OX=221988 GN=rhlB PE=3 SV=1 Length=417 Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 53/204 (26%), Positives = 86/204 (42%), Gaps = 31/204 (15%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L +L+ ++ R IIF T+ + +L R LL G Sbjct 239 KMPLLITLLEEEWPE----RCIIFANTKHQCEKIWGYLAADGH------RVGLLTG---- 284 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q+ + ++++F DG L++LVAT VA GL IP V Y L + V Sbjct 285 ----DVAQKKRLSLLKQFTDGALDILVATDVAARGLHIPDVTHVFNYDLPDDREDYVHRI 340 Query 470 GR-ARADQS--VYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQ 526 GR RA +S +F E + L A+E + +A + Q + + IRDL Sbjct 341 GRTGRAGESGVSISFACEEYAMNLP------AIEEYIGHHIA----VSQYDSDSLIRDLA 390 Query 527 QAALTKRAAQAAQRENQRQQFPVE 550 + K + A+ R N+ P + Sbjct 391 KPYRLKPSLPASNRHNRNGAKPFK 414 >sp|A1CR32|RRP3_ASPCL ATP-dependent rRNA helicase rrp3 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=rrp3 PE=3 SV=1 Length=473 Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/111 (34%), Positives = 55/111 (50%), Gaps = 15/111 (14%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 IIFTRT + L+ G + + QL SQS+ + + KF+ Sbjct 297 IIFTRTVHETQRISFLLRAL-GFGAIPLHGQL-------SQSSRLG------ALGKFRSR 342 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYA 480 + ++LVAT VA GLDIP +VV+ + L T+ + V GR ARA +S A Sbjct 343 SRDILVATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVA 393 >sp|Q4PHU9|DBP2_USTMA ATP-dependent RNA helicase DBP2 OS=Ustilago maydis (strain 521 / FGSC 9021) OX=237631 GN=DBP2 PE=3 SV=2 Length=552 Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/170 (26%), Positives = 71/170 (42%), Gaps = 41/170 (24%) Query 331 FDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQ 390 F+ + + HL T EN K+ IIFT T++ A L +L+Q Sbjct 359 FEKKGKLIGHLETISAENGKV-------------------IIFTSTKRVADDLTKFLRQD 399 Query 391 QGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE--VIQKFQDGTLNLLVATSVAEEGLDIP 448 G + + H ++ Q+ V+ +F+ G ++VAT+VA GLD+ Sbjct 400 ----------------GWPALAIHGDKQQQERDWVLAEFKSGRSPIMVATAVASRGLDVK 443 Query 449 HCNVVVRYGLLTNE---ISMVQARGRARADQSVYAFVATEGSRELKRELI 495 + V+ Y TN + + GRA + Y + E S+ RELI Sbjct 444 DISYVINYDFPTNTEDYVHQIGRTGRAGRTGTAYTYFTPENSKS-ARELI 492 >sp|P06634|DED1_YEAST ATP-dependent RNA helicase DED1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DED1 PE=1 SV=2 Length=604 Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/133 (32%), Positives = 63/133 (47%), Gaps = 19/133 (14%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 +IF T++ A L +L Q + RA + G TQ +++ + F+ G Sbjct 403 LIFVETKRMADQLTDFLIMQ------NFRATAIHG--------DRTQSERERALAAFRSG 448 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQS--VYAFVATEGS 487 LLVAT+VA GLDIP+ V+ Y L ++ V GR RA + AF +E S Sbjct 449 AATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNSENS 508 Query 488 RELK--RELINEA 498 +K E++ EA Sbjct 509 NIVKGLHEILTEA 521 >sp|A6ZP47|DED1_YEAS7 ATP-dependent RNA helicase DED1 OS=Saccharomyces cerevisiae (strain YJM789) OX=307796 GN=DED1 PE=3 SV=1 Length=604 Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/133 (32%), Positives = 63/133 (47%), Gaps = 19/133 (14%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 +IF T++ A L +L Q + RA + G TQ +++ + F+ G Sbjct 403 LIFVETKRMADQLTDFLIMQ------NFRATAIHG--------DRTQSERERALAAFRSG 448 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQS--VYAFVATEGS 487 LLVAT+VA GLDIP+ V+ Y L ++ V GR RA + AF +E S Sbjct 449 AATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNSENS 508 Query 488 RELK--RELINEA 498 +K E++ EA Sbjct 509 NIVKGLHEILTEA 521 >sp|Q6FNK8|RRP3_CANGA ATP-dependent rRNA helicase RRP3 OS=Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=RRP3 PE=3 SV=1 Length=493 Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/109 (35%), Positives = 54/109 (50%), Gaps = 17/109 (16%) Query 371 IIFTRTRQSAHSLLLWLQQQQGL-QTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD 429 IIFTRT+ +A L GL ++ A L G N +Q T + F+ Sbjct 317 IIFTRTKANAERL-------SGLCNLLEFSATALHGDLNQNQRTG--------ALDLFKA 361 Query 430 GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQS 477 G ++LVAT VA GLDIP ++V+ Y + + S + GR ARA +S Sbjct 362 GKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRS 410 >sp|A1D405|RRP3_NEOFI ATP-dependent rRNA helicase rrp3 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=rrp3 PE=3 SV=1 Length=472 Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/111 (34%), Positives = 54/111 (49%), Gaps = 15/111 (14%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 IIFTRT + L+ G + + QL SQS + + KF+ Sbjct 296 IIFTRTVHETQRISFLLRSL-GFGAIPLHGQL-------SQSARLG------ALGKFRSR 341 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYA 480 + ++LVAT VA GLDIP +VV+ + L T+ + V GR ARA +S A Sbjct 342 SRDILVATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVA 392 >sp|Q4WJE9|RRP3_ASPFU ATP-dependent rRNA helicase rrp3 OS=Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293) OX=330879 GN=rrp3 PE=3 SV=1 Length=472 Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/111 (34%), Positives = 54/111 (49%), Gaps = 15/111 (14%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 IIFTRT + L+ G + + QL SQS + + KF+ Sbjct 296 IIFTRTVHETQRISFLLRSL-GFGAIPLHGQL-------SQSARLG------ALGKFRSR 341 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYA 480 + ++LVAT VA GLDIP +VV+ + L T+ + V GR ARA +S A Sbjct 342 SRDILVATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVA 392 >sp|Q4WP13|DED1_ASPFU ATP-dependent RNA helicase ded1 OS=Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293) OX=330879 GN=ded1 PE=3 SV=1 Length=674 Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 2/83 (2%) Query 416 TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA 474 TQR+++ ++ F+ G +LVAT+VA GLDIP+ V+ Y L T+ V GR RA Sbjct 485 TQRERERALEMFRSGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRA 544 Query 475 -DQSVYAFVATEGSRELKRELIN 496 + + +R + RELI+ Sbjct 545 GNTGIATAFFNRSNRGVVRELID 567 >sp|A5DQS0|DED1_PICGU ATP-dependent RNA helicase DED1 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DED1 PE=3 SV=3 Length=637 Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/134 (30%), Positives = 61/134 (46%), Gaps = 16/134 (12%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 IIFT T++ A +L +L Q G I +Q ++++ + F+ G Sbjct 430 IIFTETKRMADNLADFLYDQ-GFPATAIHGD-------------RSQYEREKALAAFKSG 475 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFVATEGSREL 490 T +LVAT+VA GLDIP+ + VV Y L + V GR +V +AT Sbjct 476 TAPILVATAVAARGLDIPNVSHVVNYDLPGDIDDYVHRIGRTGRAGNVG--IATAFFNRN 533 Query 491 KRELINEALETLME 504 R ++ +E L E Sbjct 534 NRNVVKGMIELLSE 547 >sp|Q4UKL6|UVRB_RICFE UvrABC system protein B OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) OX=315456 GN=uvrB PE=3 SV=1 Length=661 Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/109 (27%), Positives = 56/109 (51%), Gaps = 19/109 (17%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 R ++ T T++ A L +LQ+ + S +++ ++ E+++ + Sbjct 447 RVLVTTLTKKMAEDLTAYLQE--------------LKYKTSYLHSNIHTLERIEILRDLR 492 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 GT+++LV ++ EGLDIP C +V + G L +E+S++Q GRA Sbjct 493 QGTIDILVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGRA 541 >sp|Q9VHP0|DDX3_DROME ATP-dependent RNA helicase bel OS=Drosophila melanogaster OX=7227 GN=bel PE=1 SV=1 Length=798 Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/134 (31%), Positives = 64/134 (48%), Gaps = 16/134 (12%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 +IF T++ A SL +L Q T S TQ++++E ++ F+ G Sbjct 563 LIFVETKKGADSLEEFLYQCNHPVT--------------SIHGDRTQKEREEALRCFRSG 608 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFVATEGSREL 490 +LVAT+VA GLDIPH V+ + L ++ V GR ++ VAT E Sbjct 609 DCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNL--GVATSFFNEK 666 Query 491 KRELINEALETLME 504 R + ++ LE L+E Sbjct 667 NRNICSDLLELLIE 680 >sp|A1CH78|DED1_ASPCL ATP-dependent RNA helicase ded1 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=ded1 PE=3 SV=1 Length=681 Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 2/83 (2%) Query 416 TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA 474 TQR+++ ++ F+ +LVAT+VA GLDIP+ V+ Y L T+ V GR RA Sbjct 486 TQRERERALEMFRSARCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRA 545 Query 475 -DQSVYAFVATEGSRELKRELIN 496 + + G+R + RELI+ Sbjct 546 GNTGIATAFFNRGNRGVVRELID 568 >sp|A3LP87|DBP8_PICST ATP-dependent RNA helicase DBP8 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) OX=322104 GN=DBP8 PE=3 SV=2 Length=445 Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 33/102 (32%), Positives = 53/102 (52%), Gaps = 7/102 (7%) Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 +S + M Q ++ +Q+F+ G +L+AT VA GLDIP +VV + + + + Sbjct 281 ASLHSEMPQSERTNSVQRFKAGAARILIATDVASRGLDIPSVELVVNFDIPADPDDFIHR 340 Query 469 RGR-ARADQSVYAFVATEGSRELKR-----ELINEALETLME 504 GR ARA +S A V +++ R E IN+ +E L E Sbjct 341 VGRTARAGRSGDA-VTIIAEKDIDRIASIEERINKKMELLEE 381 >sp|O25029|RHPA_HELPY DEAD-box ATP-dependent RNA helicase RhpA OS=Helicobacter pylori (strain ATCC 700392 / 26695) OX=85962 GN=rhpA PE=1 SV=1 Length=492 Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 34/104 (33%), Positives = 49/104 (47%), Gaps = 14/104 (13%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 + I+FTRT++ A L Q L + + ++ L G M QRD++ I F+ Sbjct 259 KSIVFTRTKKEADEL------HQFLASKNYKSTALHG--------DMDQRDRRSSIMAFK 304 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA 472 ++LVAT VA GLDI + V Y L N S + GR Sbjct 305 KNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRT 348 >sp|Q7Y183|RH10_ORYSJ DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa subsp. japonica OX=39947 GN=RH10 PE=2 SV=1 Length=472 Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 47/179 (26%), Positives = 80/179 (45%), Gaps = 23/179 (13%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 +IF RT +S L L L+ ++R + + S S M+Q + + +F+ Sbjct 286 MIFVRTCESTRLLALTLR--------NLRFKAI------SISGQMSQDKRLGALNRFKTK 331 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRE 489 N+L+ T VA GLDI +VV+ Y + N V GR ARA + YA Sbjct 332 DCNILICTDVASRGLDIQGVDVVINYDIPMNSKDYVHRVGRTARAGNTGYAVSLVNQYEA 391 Query 490 LKRELINEALETLMEQAVAAVQKMDQAEY---QAKIRDLQQAALTKRAAQAAQRENQRQ 545 + ++I + L + +K+D AE + +I D ++ ALT ++ +R+ Sbjct 392 MWFKMIEKLLGYEIPD-----RKVDNAEIMILRERISDSKRIALTTMKEGGGHKKKRRK 445 >sp|A2XKG2|RH10_ORYSI DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa subsp. indica OX=39946 GN=RH10 PE=1 SV=1 Length=472 Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 47/179 (26%), Positives = 80/179 (45%), Gaps = 23/179 (13%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 +IF RT +S L L L+ ++R + + S S M+Q + + +F+ Sbjct 286 MIFVRTCESTRLLALTLR--------NLRFKAI------SISGQMSQDKRLGALNRFKTK 331 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRE 489 N+L+ T VA GLDI +VV+ Y + N V GR ARA + YA Sbjct 332 DCNILICTDVASRGLDIQGVDVVINYDIPMNSKDYVHRVGRTARAGNTGYAVSLVNQYEA 391 Query 490 LKRELINEALETLMEQAVAAVQKMDQAEY---QAKIRDLQQAALTKRAAQAAQRENQRQ 545 + ++I + L + +K+D AE + +I D ++ ALT ++ +R+ Sbjct 392 MWFKMIEKLLGYEIPD-----RKVDNAEIMILRERISDSKRIALTTMKEGGGHKKKRRK 445 >sp|Q1RHI9|UVRB_RICBR UvrABC system protein B OS=Rickettsia bellii (strain RML369-C) OX=336407 GN=uvrB PE=3 SV=1 Length=661 Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 21/56 (38%), Positives = 36/56 (64%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+++ + GT+++LV ++ EGLDIP C +V + G L +E+S++Q GRA Sbjct 486 EILRDLRQGTIDILVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGRA 541 >sp|A8GV86|UVRB_RICB8 UvrABC system protein B OS=Rickettsia bellii (strain OSU 85-389) OX=391896 GN=uvrB PE=3 SV=1 Length=661 Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 21/56 (38%), Positives = 36/56 (64%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+++ + GT+++LV ++ EGLDIP C +V + G L +E+S++Q GRA Sbjct 486 EILRDLRQGTIDILVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGRA 541 >sp|Q6YS30|RH5_ORYSJ DEAD-box ATP-dependent RNA helicase 5 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0301200 PE=2 SV=1 Length=512 Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 33/95 (35%), Positives = 49/95 (52%), Gaps = 6/95 (6%) Query 407 GNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL-LTNE- 462 G S+ S H Q D+ + + F++G+ L++AT VA GLDIP VV+ Y LT E Sbjct 366 GWSAVSVHGDKAQHDRTKALSLFKEGSCPLMIATDVASRGLDIPDVEVVINYSYPLTTED 425 Query 463 -ISMVQARGRARADQSVYAFVATEGSRELKRELIN 496 + + GRA + F E ++ L EL+N Sbjct 426 YVHRIGRTGRAGKKGVAHTFFTQE-NKGLAGELVN 459 >sp|Q0UN57|PRP5_PHANO Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) OX=321614 GN=PRP5 PE=3 SV=2 Length=1184 Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 50/99 (51%), Gaps = 13/99 (13%) Query 358 LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ 417 L + FS + + +IFT +++A LL L + + I GA + Q Sbjct 788 LGQTFSDDENAQVLIFTERQETAEDLLSKLFKAKYFAVNTIH-----GAKD--------Q 834 Query 418 RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY 456 D+ E I +F+ G LN+L+ATSVA GLD+P +V + Sbjct 835 TDRNEAINEFKQGLLNILIATSVAARGLDVPGLALVYNF 873 >sp|P44701|SRMB_HAEIN ATP-dependent RNA helicase SrmB OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=srmB PE=3 SV=1 Length=439 Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 17/130 (13%) Query 356 KILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHM 415 K+L R + RGI+F R R+ A L + L+ IR+ L G M Sbjct 237 KLLARFIETEEVTRGIVFIRRREDAREL------SETLRKRGIRSAYLEG--------EM 282 Query 416 TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA 474 Q + I K + G + +LVAT VA G+DI + V+ + L + + + GR ARA Sbjct 283 AQTQRNNAIDKLKSGIVTVLVATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARA 342 Query 475 DQ--SVYAFV 482 + + +FV Sbjct 343 GKKGTAVSFV 352 >sp|P57453|DEAD_BUCAI ATP-dependent RNA helicase DeaD OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) OX=107806 GN=deaD PE=3 SV=1 Length=601 Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 73/142 (51%), Gaps = 19/142 (13%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 IIF RT+ + + L++ G +++ + M Q +++ +++ ++G Sbjct 248 IIFVRTKNATLEVSEALERN--------------GYNSAALNGDMNQALREQTLERLKNG 293 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRE 489 L++L+AT VA GLD+ + V+ Y + + S V GR RA ++ A + E +RE Sbjct 294 RLDILIATDVAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRAGRALLFVE-NRE 352 Query 490 LKRELINEALETLMEQAVAAVQ 511 +R L N +E M+Q++ VQ Sbjct 353 -RRLLRN--IERTMKQSIPEVQ 371 >sp|B9XXL6|RHPA_HELP8 DEAD-box ATP-dependent RNA helicase RhpA OS=Helicobacter pylori (strain B128) OX=544406 GN=rhpA PE=1 SV=1 Length=492 Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 14/115 (12%) Query 358 LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ 417 + R + + I+FTRT++ A L Q L + + ++ L G M Q Sbjct 248 IMRLLDTQAPKKSIVFTRTKKEADEL------HQFLASKNYKSTALHG--------DMDQ 293 Query 418 RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA 472 RD++ I F+ ++LVAT VA GLDI + V Y L N S + GR Sbjct 294 RDRRASIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRT 348 >sp|C4K0Z4|UVRB_RICPU UvrABC system protein B OS=Rickettsia peacockii (strain Rustic) OX=562019 GN=uvrB PE=3 SV=1 Length=661 Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 21/56 (38%), Positives = 36/56 (64%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+++ + GT+++LV ++ EGLDIP C +V + G L +E+S++Q GRA Sbjct 486 EILRDLRQGTIDVLVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGRA 541 >sp|C3PMP5|UVRB_RICAE UvrABC system protein B OS=Rickettsia africae (strain ESF-5) OX=347255 GN=uvrB PE=3 SV=1 Length=661 Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 21/56 (38%), Positives = 36/56 (64%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+++ + GT+++LV ++ EGLDIP C +V + G L +E+S++Q GRA Sbjct 486 EILRDLRQGTIDVLVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGRA 541 >sp|A8GR53|UVRB_RICRS UvrABC system protein B OS=Rickettsia rickettsii (strain Sheila Smith) OX=392021 GN=uvrB PE=3 SV=1 Length=661 Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 21/56 (38%), Positives = 36/56 (64%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+++ + GT+++LV ++ EGLDIP C +V + G L +E+S++Q GRA Sbjct 486 EILRDLRQGTIDVLVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGRA 541 >sp|B0BWK0|UVRB_RICRO UvrABC system protein B OS=Rickettsia rickettsii (strain Iowa) OX=452659 GN=uvrB PE=3 SV=1 Length=661 Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 21/56 (38%), Positives = 36/56 (64%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+++ + GT+++LV ++ EGLDIP C +V + G L +E+S++Q GRA Sbjct 486 EILRDLRQGTIDVLVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGRA 541 >sp|Q92J03|UVRB_RICCN UvrABC system protein B OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) OX=272944 GN=uvrB PE=3 SV=1 Length=661 Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 54/109 (50%), Gaps = 19/109 (17%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 R ++ T T++ A L +LQ+ L + H +R E+++ + Sbjct 447 RVLVTTLTKKMAEDLTAYLQE------------LKYKTSYLHSNVHTLER--IEILRDLR 492 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 GT+++LV ++ EGLDIP C +V + G L +E+S++Q GRA Sbjct 493 QGTIDVLVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGRA 541 >sp|A6ZSX1|RRP3_YEAS7 ATP-dependent rRNA helicase RRP3 OS=Saccharomyces cerevisiae (strain YJM789) OX=307796 GN=RRP3 PE=3 SV=1 Length=501 Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 38/109 (35%), Positives = 54/109 (50%), Gaps = 17/109 (16%) Query 371 IIFTRTRQSAHSLLLWLQQQQGL-QTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD 429 IIFTRT+ +A L GL ++ A L G N +Q + + F+ Sbjct 325 IIFTRTKANAERL-------SGLCNLLEFSATALHGDLNQNQ--------RMGALDLFKA 369 Query 430 GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQS 477 G ++LVAT VA GLDIP ++VV Y + + S + GR ARA +S Sbjct 370 GKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRS 418 >sp|Q6BU54|DED1_DEBHA ATP-dependent RNA helicase DED1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DED1 PE=3 SV=1 Length=630 Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 14/120 (12%) Query 352 EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ 411 E + +L S++++ IIFT T++ A +L +L Q G I Sbjct 398 EEKKSVLLDLLSANDNGLTIIFTETKRMADNLADFLYDQ-GFPATAIHGD---------- 446 Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 +Q ++++ + F+ GT +LVAT+VA GLDIP+ + +V Y L ++ V GR Sbjct 447 ---RSQYEREKALAAFKTGTAPILVATAVAARGLDIPNVSHIVNYDLPSDIDDYVHRIGR 503 >sp|Q1DHB2|PRP5_COCIM Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Coccidioides immitis (strain RS) OX=246410 GN=PRP5 PE=3 SV=1 Length=1197 Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 56/210 (27%), Positives = 89/210 (42%), Gaps = 32/210 (15%) Query 312 REHVTK-TQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNS--P 368 R+ +TK +I+ R ++A E+ + PEN K L ++L +S N+ Sbjct 759 RKTLTKPVEIIVGGRSVVA------QEITQIVEVRPENTKFVRLLELLGNLYSDDNNEDA 812 Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQK 426 R +IF +++A LL L ++ G S H Q D+ I Sbjct 813 RALIFVDRQEAADGLLRDLMRK----------------GYPCMSIHGGKDQVDRDSTIDD 856 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGRARADQSVYAFVA 483 F+ G +L+ATSVA GLD+ +V+ Y L + + GRA + F+ Sbjct 857 FKAGIFPVLIATSVAARGLDVKQLKLVINYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLT 916 Query 484 TEGSRELKRELINEALETLMEQAVAAVQKM 513 E +E I +AL+ + AVQKM Sbjct 917 EE--QERYSVDIAKALKQSGQSVPEAVQKM 944 >sp|Q4L3G0|MFD_STAHJ Transcription-repair-coupling factor OS=Staphylococcus haemolyticus (strain JCSC1435) OX=279808 GN=mfd PE=3 SV=1 Length=1169 Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/74 (34%), Positives = 43/74 (58%), Gaps = 10/74 (14%) Query 414 HMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQA 468 MT+RD +E + F +G ++LV T++ E G+D+P+ N ++ R+GL + Q Sbjct 863 QMTERDLEETMLSFINGEFDILVTTTIIETGVDVPNANTLIIEEADRFGL----SQLYQL 918 Query 469 RGR-ARADQSVYAF 481 RGR R+ + YA+ Sbjct 919 RGRVGRSSRIGYAY 932 >sp|Q4P733|DED1_USTMA ATP-dependent RNA helicase DED1 OS=Ustilago maydis (strain 521 / FGSC 9021) OX=237631 GN=DED1 PE=3 SV=1 Length=672 Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 33/104 (32%), Positives = 55/104 (53%), Gaps = 4/104 (4%) Query 396 VDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV 453 D+ + L+ + + S H TQR+++ ++ F+ G ++VAT+VA GLDIP+ V Sbjct 463 ADMLSDFLLRSKIGATSIHGDRTQRERERALELFRSGKTPIMVATAVAARGLDIPNVTHV 522 Query 454 VRYGLLTNEISMVQARGR-ARADQSVYAFV-ATEGSRELKRELI 495 V Y L ++ V GR RA +A G++ + R+LI Sbjct 523 VNYDLPSDVDDYVHRIGRTGRAGNVGHATAFFNRGNKNIVRDLI 566 >sp|Q6Z4K6|RH52B_ORYSJ DEAD-box ATP-dependent RNA helicase 52B OS=Oryza sativa subsp. japonica OX=39947 GN=PL10B PE=2 SV=1 Length=638 Score = 47.4 bits (111), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 39/136 (29%), Positives = 61/136 (45%), Gaps = 25/136 (18%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQ 428 ++F T++ A +L WL G + S H TQ++++ ++ F+ Sbjct 432 LVFVETKRGADALENWLYNN----------------GFPATSIHGDRTQQEREYALRSFK 475 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGRARADQSVYAFVATE 485 G +LVAT VA GLDIPH V+ + L + + + + GRA AF E Sbjct 476 SGATPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSGLATAFF-NE 534 Query 486 GSRELKR---ELINEA 498 + L R EL+ EA Sbjct 535 SNTPLARPLSELMQEA 550 >sp|Q87KH5|RHLB_VIBPA ATP-dependent RNA helicase RhlB OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) OX=223926 GN=rhlB PE=3 SV=1 Length=437 Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 80/323 (25%), Positives = 131/323 (41%), Gaps = 69/323 (21%) Query 253 FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR-YN----DALLIHDTVRAVDALAALQ 307 +G + Y++Q+ KL + + R+ + +R +N A+++ + R D L ++ Sbjct 119 YGGESYDKQLAKLQDGVDILIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFD-LGFIK 177 Query 308 D--FYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPENPKLEMLEK----I 357 D F R ++ + RL LF R ELA H PE+ +E +K I Sbjct 178 DIRFLFR------RMPEPKERLNMLFSATLSYRVQELAFEHMHNPEHVVVEPAQKTGHRI 231 Query 358 LQRQFSSSNSP---------------RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL 402 + F SN R I+F T+ S+ W L R L Sbjct 232 QEELFYPSNEDKMALLQTLIEEEWPDRAIVFANTKHKCESV--WGH----LAADGHRVGL 285 Query 403 LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---L 459 L G + Q+ +++++++F G +++LVAT VA GL IP V Y L Sbjct 286 LTG--------DVPQKKREKILEQFTKGDVDILVATDVAARGLHIPQVTHVFNYDLPDDC 337 Query 460 TNEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQ 519 + + + GRA A +F E + L A+E +E + +EY Sbjct 338 EDYVHRIGRTGRAGASGHSISFACEEYAINLP------AIEEYIEHTIPV------SEYD 385 Query 520 AK--IRDLQQAALTKRAAQAAQR 540 A I+DL A + RA + QR Sbjct 386 ASALIQDL-PAPIRMRAPRVQQR 407 >sp|Q0ILZ4|RH9_ORYSJ DEAD-box ATP-dependent RNA helicase 9 OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0611200 PE=2 SV=1 Length=628 Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 33/115 (29%), Positives = 55/115 (48%), Gaps = 20/115 (17%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQ 428 I+FT+T++ A R +G Q+ H +TQ ++ ++ F+ Sbjct 346 IVFTQTKRDAD-----------------RLSYTMGRSFQCQALHGDITQAQRERTLKGFR 388 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFV 482 +G N+L+AT VA GLDIP+ ++V+ + L + V GR RA + A V Sbjct 389 EGHFNILIATDVAARGLDIPNVDLVIHFELPNSSELFVHRSGRTGRAGKKGKAIV 443 >sp|Q914K8|Y022_SIFVH Putative helicase 22 OS=Sulfolobus islandicus filamentous virus (isolate Iceland/Hveragerdi) OX=654908 GN=SIFV0022 PE=4 SV=1 Length=559 Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 48/183 (26%), Positives = 81/183 (44%), Gaps = 38/183 (21%) Query 1 MELRSYQWEVIMPALEGKNII----IWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNR 56 E+R+YQ I + N+I I PTG+GK+ A A L+ + AK+V VN Sbjct 172 FEMRNYQINSIKSWVSDVNVIGNGIIKAPTGSGKSVIAILSALEILKNKNNAKIVYAVNS 231 Query 57 VHLVTQHGEEFRRMLDGRWTVTTLSGDM-----GPRAGFGHLARCHDLLICTAELLQMAL 111 L+ Q + F + D + + +SG++ G R+ F L+ + Sbjct 232 TTLLKQF-QNFAKKEDLPFVL--VSGEIDEIKKGERSDFIALS------------ISYYY 276 Query 112 TSPEEEEHVEL----TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLT 167 + + EH +L T L+++DE HHT + V ++++ P LGL+ Sbjct 277 SKKKRNEHEKLKELVTNADLVIIDEAHHTPANIVKSLLLD----------SPNSIRLGLS 326 Query 168 ASP 170 A+P Sbjct 327 ATP 329 Score = 40.0 bits (92), Expect = 0.078, Method: Compositional matrix adjust. Identities = 22/63 (35%), Positives = 37/63 (59%), Gaps = 2/63 (3%) Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 S T + +R E I+ ++ L +L++TS+A+EGLDIP+ +VV + I ++Q Sbjct 454 SSKTKLEER--MEKIEALKNEKLQVLISTSLADEGLDIPNLRLVVLLTQGKSRIKLIQRI 511 Query 470 GRA 472 GR Sbjct 512 GRV 514 >sp|Q54CE0|DDX17_DICDI Probable ATP-dependent RNA helicase ddx17 OS=Dictyostelium discoideum OX=44689 GN=ddx17 PE=3 SV=1 Length=785 Score = 47.4 bits (111), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 47/158 (30%), Positives = 71/158 (45%), Gaps = 24/158 (15%) Query 351 LEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSS 410 E E++L S + I+F TR+ L LQ G +++ I GN S Sbjct 613 FEKKERMLSFLGSVGRDEKVIVFAETRKGVDDLQRVLQFS-GFKSIGIH-------GNKS 664 Query 411 QSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR- 469 Q +RD V+ +F++G + +++AT VA GLDI VV Y N I + R Sbjct 665 QP----ERD--FVLSQFKNGMVPIMIATDVASRGLDIKDIKYVVNYD-FPNTIEVYIHRI 717 Query 470 ---GRARADQSVYAFVATEGSRELKRELINEALETLME 504 RA A Y+ + T+ +R L NE ++ L E Sbjct 718 GRTARAGASGVSYSLLTTDNAR-----LANELIKVLTE 750 >sp|Q9DF35|DD21A_XENLA Nucleolar RNA helicase 2-A OS=Xenopus laevis OX=8355 GN=ddx21-a PE=2 SV=2 Length=759 Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 38/137 (28%), Positives = 64/137 (47%), Gaps = 20/137 (15%) Query 338 LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD 397 + HLA + K +L ++Q S + + IIF ++ AH+L Sbjct 404 VEHLAIECTRSQKAAVLGDLVQ--VYSGSHGKTIIFCDSKLEAHTL-------------- 447 Query 398 IRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVR 455 A S++S H + Q++++ V++ F+ GT +L+AT+VA GLDIP ++VV Sbjct 448 --ATSCGSLKQSAKSLHGDLQQKEREVVLKGFRQGTFEVLIATNVAARGLDIPEVDLVVL 505 Query 456 YGLLTNEISMVQARGRA 472 Y + V GR Sbjct 506 YSAPKEADAYVHRSGRT 522 >sp|Q0UK12|RRP3_PHANO ATP-dependent rRNA helicase RRP3 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) OX=321614 GN=RRP3 PE=3 SV=2 Length=546 Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 37/108 (34%), Positives = 53/108 (49%), Gaps = 15/108 (14%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 I+FTRT L + L+ G Q + + QL SQS + + KF+ Sbjct 360 ILFTRTVNETQRLAVLLRTL-GFQALPLHGQL-------SQSNRLG------ALNKFKAK 405 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQS 477 ++LVAT VA GLDIP ++VV + L + + V GR ARA +S Sbjct 406 ARDILVATDVAARGLDIPSVDLVVNFDLPHDSETYVHRVGRTARAGKS 453 >sp|Q6FP38|DBP1_CANGA ATP-dependent RNA helicase DBP1 OS=Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DBP1 PE=3 SV=1 Length=604 Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 34/56 (61%), Gaps = 0/56 (0%) Query 416 TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 TQ +++ + F++G N+LVAT+VA GLDIP+ V+ Y L T+ V GR Sbjct 430 TQAERERALHAFRNGIANILVATAVAARGLDIPNVTNVINYDLPTDIDDYVHRIGR 485 >sp|Q2JN87|UVRB_SYNJB UvrABC system protein B OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) OX=321332 GN=uvrB PE=3 SV=1 Length=695 Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 57/109 (52%), Gaps = 19/109 (17%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 R I+ T T++ A L +LQ++ IR + L + +T ++ E++Q F+ Sbjct 472 RVIVTTLTKRMAEDLTEYLQER------GIRVRYL--------HSEITSIERIEILQDFR 517 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 +G ++LV ++ EGLD+P ++V + G L E S++Q GRA Sbjct 518 EGAFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQMIGRA 566 >sp|P38712|RRP3_YEAST ATP-dependent rRNA helicase RRP3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RRP3 PE=1 SV=2 Length=501 Score = 46.6 bits (109), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 38/109 (35%), Positives = 54/109 (50%), Gaps = 17/109 (16%) Query 371 IIFTRTRQSAHSLLLWLQQQQGL-QTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD 429 IIFTRT+ +A L GL ++ A L G N +Q + + F+ Sbjct 325 IIFTRTKANAERL-------SGLCNLLEFSATALHGDLNQNQ--------RMGSLDLFKA 369 Query 430 GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQS 477 G ++LVAT VA GLDIP ++VV Y + + S + GR ARA +S Sbjct 370 GKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRS 418 >sp|P33906|DEAD_KLEPN ATP-dependent RNA helicase DeaD OS=Klebsiella pneumoniae OX=573 GN=deaD PE=3 SV=3 Length=643 Score = 46.6 bits (109), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 43/154 (28%), Positives = 78/154 (51%), Gaps = 20/154 (13%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 IIF RT+ + + L++ G +++ + M Q +++ +++ +DG Sbjct 249 IIFVRTKNATLEVAEALERN--------------GYNSAALNGDMNQALREQALERLKDG 294 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRE 489 L++L+AT VA GLD+ ++VV Y + + S V GR RA ++ A + E +RE Sbjct 295 RLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVE-NRE 353 Query 490 LKRELINEALETLMEQAVAAVQKMDQAEYQAKIR 523 +R L N +E M+ + V+ + AE +K R Sbjct 354 -RRLLRN--IERTMKLTIPEVE-LPNAELLSKRR 383 >sp|Q8XA87|DEAD_ECO57 ATP-dependent RNA helicase DeaD OS=Escherichia coli O157:H7 OX=83334 GN=deaD PE=3 SV=3 Length=629 Score = 46.6 bits (109), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 43/154 (28%), Positives = 77/154 (50%), Gaps = 20/154 (13%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 IIF RT+ + + L++ G +++ + M Q +++ +++ +DG Sbjct 249 IIFVRTKNATLEVAEALERN--------------GYNSAALNGDMNQALREQTLERLKDG 294 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRE 489 L++L+AT VA GLD+ ++VV Y + + S V GR RA ++ A + E +RE Sbjct 295 RLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVE-NRE 353 Query 490 LKRELINEALETLMEQAVAAVQKMDQAEYQAKIR 523 +R L N +E M+ + V+ + AE K R Sbjct 354 -RRLLRN--IERTMKLTIPEVE-LPNAELLGKRR 383 >sp|P0A9P8|DEAD_SHIFL ATP-dependent RNA helicase DeaD OS=Shigella flexneri OX=623 GN=deaD PE=3 SV=2 Length=629 Score = 46.6 bits (109), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 43/154 (28%), Positives = 77/154 (50%), Gaps = 20/154 (13%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 IIF RT+ + + L++ G +++ + M Q +++ +++ +DG Sbjct 249 IIFVRTKNATLEVAEALERN--------------GYNSAALNGDMNQALREQTLERLKDG 294 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRE 489 L++L+AT VA GLD+ ++VV Y + + S V GR RA ++ A + E +RE Sbjct 295 RLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVE-NRE 353 Query 490 LKRELINEALETLMEQAVAAVQKMDQAEYQAKIR 523 +R L N +E M+ + V+ + AE K R Sbjct 354 -RRLLRN--IERTMKLTIPEVE-LPNAELLGKRR 383 >sp|P0A9P6|DEAD_ECOLI ATP-dependent RNA helicase DeaD OS=Escherichia coli (strain K12) OX=83333 GN=deaD PE=1 SV=2 Length=629 Score = 46.6 bits (109), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 43/154 (28%), Positives = 77/154 (50%), Gaps = 20/154 (13%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 IIF RT+ + + L++ G +++ + M Q +++ +++ +DG Sbjct 249 IIFVRTKNATLEVAEALERN--------------GYNSAALNGDMNQALREQTLERLKDG 294 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRE 489 L++L+AT VA GLD+ ++VV Y + + S V GR RA ++ A + E +RE Sbjct 295 RLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVE-NRE 353 Query 490 LKRELINEALETLMEQAVAAVQKMDQAEYQAKIR 523 +R L N +E M+ + V+ + AE K R Sbjct 354 -RRLLRN--IERTMKLTIPEVE-LPNAELLGKRR 383 >sp|P0A9P7|DEAD_ECOL6 ATP-dependent RNA helicase DeaD OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=deaD PE=3 SV=2 Length=629 Score = 46.6 bits (109), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 43/154 (28%), Positives = 77/154 (50%), Gaps = 20/154 (13%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 IIF RT+ + + L++ G +++ + M Q +++ +++ +DG Sbjct 249 IIFVRTKNATLEVAEALERN--------------GYNSAALNGDMNQALREQTLERLKDG 294 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRE 489 L++L+AT VA GLD+ ++VV Y + + S V GR RA ++ A + E +RE Sbjct 295 RLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVE-NRE 353 Query 490 LKRELINEALETLMEQAVAAVQKMDQAEYQAKIR 523 +R L N +E M+ + V+ + AE K R Sbjct 354 -RRLLRN--IERTMKLTIPEVE-LPNAELLGKRR 383 >sp|Q7RY59|RRP3_NEUCR ATP-dependent rRNA helicase rrp-3 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=rrp-3 PE=3 SV=1 Length=515 Score = 46.6 bits (109), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 15/112 (13%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 IIFTRT + + L+ +G G ++Q + + KF+ G Sbjct 334 IIFTRTVLETQRIAILLRT--------------LGMGAIPLHGGLSQSARLGALNKFRAG 379 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF 481 + +LVAT VA GLDIP+ + V+ + L + + V GR ARA +S +A Sbjct 380 SREILVATDVAARGLDIPNVDCVINHDLPQDSKTYVHRVGRTARAGKSGHAI 431 >sp|A5E0U9|DBP8_LODEL ATP-dependent RNA helicase DBP8 OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) OX=379508 GN=DBP8 PE=3 SV=1 Length=444 Score = 46.2 bits (108), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 35/129 (27%), Positives = 66/129 (51%), Gaps = 9/129 (7%) Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 +S + M Q ++ + +F+ G +L+AT VA GLDIP +VV + + + + Sbjct 284 ASLHSEMPQTERTNSLHRFKAGAARILIATDVASRGLDIPTVELVVNFDIPADPDDFIHR 343 Query 469 RGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD-LQ 526 GR ARA + A ++ G ++++R +E++ E+ ++ ++ + I D LQ Sbjct 344 VGRTARAGRKGDA-ISIIGEKDIER------IESIEERINKKMELLEGVDDDKVINDSLQ 396 Query 527 QAALTKRAA 535 +A KR A Sbjct 397 KATTAKREA 405 >sp|Q6CLR3|DED1_KLULA ATP-dependent RNA helicase DED1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=DED1 PE=3 SV=1 Length=627 Score = 46.6 bits (109), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 35/137 (26%), Positives = 65/137 (47%), Gaps = 18/137 (13%) Query 363 SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE 422 ++SN +IF T+++A SL +L + G + I TQ +++ Sbjct 412 AASNEGLTLIFVETKRAADSLTDFLIME-GFKATAIHGD-------------RTQGERER 457 Query 423 VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGRARADQSVY 479 + F+ G +LVAT+VA GLDIP+ V+ + L + + + + GRA + V Sbjct 458 ALSAFKTGRATILVATAVAARGLDIPNVTHVINFDLPNDIDDYVHRIGRTGRA-GNTGVA 516 Query 480 AFVATEGSRELKRELIN 496 G++ + +EL++ Sbjct 517 TTFFNRGNKNVAKELVS 533 >sp|Q9VIF6|DDX47_DROME ATP-dependent RNA helicase DDX47 OS=Drosophila melanogaster OX=7227 GN=pths PE=1 SV=1 Length=507 Score = 46.2 bits (108), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 25/70 (36%), Positives = 39/70 (56%), Gaps = 1/70 (1%) Query 414 HMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-A 472 M+Q + + KF+ ++L++T VA GLDIPH +VVV + + T+ + GR A Sbjct 333 QMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTA 392 Query 473 RADQSVYAFV 482 RA +S A Sbjct 393 RAGRSGKAIT 402 >sp|Q96GQ7|DDX27_HUMAN Probable ATP-dependent RNA helicase DDX27 OS=Homo sapiens OX=9606 GN=DDX27 PE=1 SV=2 Length=796 Score = 46.6 bits (109), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 40/134 (30%), Positives = 67/134 (50%), Gaps = 24/134 (18%) Query 371 IIFTRTRQSAHSL--LLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 ++FT+T++ AH + LL L GLQ ++ GN SQ+ + E +++F+ Sbjct 467 MLFTQTKKQAHRMHILLGLM---GLQVGELH-------GNLSQTQRL------EALRRFK 510 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR----ARADQSVYAFVAT 484 D +++LVAT VA GLDI V+ + + V GR RA +SV + Sbjct 511 DEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVS--LVG 568 Query 485 EGSRELKRELINEA 498 E R++ +E++ A Sbjct 569 EDERKMLKEIVKAA 582 >sp|A6R3L3|DED1_AJECN ATP-dependent RNA helicase DED1 OS=Ajellomyces capsulatus (strain NAm1 / WU24) OX=2059318 GN=DED1 PE=3 SV=1 Length=694 Score = 46.6 bits (109), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 5/85 (6%) Query 416 TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS----MVQARGR 471 TQR+++ ++ F+ G +LVAT+VA GLDIP+ V+ Y L NEI + GR Sbjct 496 TQRERERALELFRTGRCPILVATAVAARGLDIPNVTHVINYD-LPNEIDDYVHRIGRTGR 554 Query 472 ARADQSVYAFVATEGSRELKRELIN 496 A AF + + ++ R L++ Sbjct 555 AGNTGISTAFFSRSKNFKIARSLVD 579 >sp|A4STJ7|RHLB_AERS4 ATP-dependent RNA helicase RhlB OS=Aeromonas salmonicida (strain A449) OX=382245 GN=rhlB PE=3 SV=1 Length=429 Score = 46.2 bits (108), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 49/110 (45%), Gaps = 15/110 (14%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 + I+F T+ + WL+ R LL G + Q+ + ++++ F Sbjct 258 KAIVFANTKHVCEDVHAWLENDGH------RVGLLTG--------DVPQKKRMKILEDFT 303 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQS 477 GTL++LVAT VA GL IP V Y L + V GR RA +S Sbjct 304 KGTLDILVATDVAARGLHIPDVTHVFNYDLPDDAEDYVHRIGRTGRAGKS 353 >sp|Q1DZK8|DBP3_COCIM ATP-dependent RNA helicase DBP3 OS=Coccidioides immitis (strain RS) OX=246410 GN=DBP3 PE=3 SV=2 Length=515 Score = 46.2 bits (108), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 41/149 (28%), Positives = 71/149 (48%), Gaps = 15/149 (10%) Query 398 IRAQLLIGA-GNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV 454 +R + IG+ G H M+Q ++ ++ F+ G+++LLVAT VA GLDIP +V+ Sbjct 364 MRVERFIGSKGFKVAGIHGDMSQTERFRSLEAFKSGSISLLVATDVAARGLDIPAVKLVL 423 Query 455 RYGL---LTNEISMVQARGRARADQSVYAFVATEGSRELKRELIN-------EALETLME 504 + + + + GRA A + + + TE + L LIN + E+L++ Sbjct 424 NVTFPLTIEDYVHRIGRTGRAGA-EGLAITLFTERDKALSGPLINVLRAADQDVPESLLK 482 Query 505 QAVAAVQKMDQAEYQAKIRDLQQAALTKR 533 A V+K Y A R++ + R Sbjct 483 FG-ATVKKKQHESYGAFFREMDTTKVASR 510 >sp|O13370|DED1_SCHPO ATP-dependent RNA helicase ded1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ded1 PE=1 SV=1 Length=636 Score = 46.6 bits (109), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 31/105 (30%), Positives = 53/105 (50%), Gaps = 6/105 (6%) Query 396 VDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV 453 D L+ + + S H TQR+++ ++ F+ G +++VAT+VA GLDIP+ V Sbjct 443 ADTLTDYLLNSNFPATSIHGDRTQRERERALELFRSGRTSIMVATAVASRGLDIPNVTHV 502 Query 454 VRYGLLT---NEISMVQARGRARADQSVYAFVATEGSRELKRELI 495 + Y L T + + + GRA AF ++ + +ELI Sbjct 503 INYDLPTDIDDYVHRIGRTGRAGNTGQAVAFF-NRNNKGIAKELI 546 >sp|Q4A127|HSDR_STAS1 Type I restriction enzyme SsaAORF53P endonuclease subunit OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41) OX=342451 GN=hsdR PE=3 SV=1 Length=930 Score = 46.6 bits (109), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 45/185 (24%), Positives = 74/185 (40%), Gaps = 18/185 (10%) Query 1 MELRSYQWE----VIMPALE-GKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVN 55 M +R YQ +I A E N IW TG+GKT + ++ E D KV+ LV+ Sbjct 239 MAMRPYQVHAVEALIHQATETSNNGYIWHTTGSGKTLTSFKASQVLSEQDDIKKVIFLVD 298 Query 56 RVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE 115 R L +Q EEF + G T + + + L L++ T + + A+ + Sbjct 299 RKDLDSQTEEEFNKFSKGSVDKTNNTAQLVKQLKDKSLP----LIVTTIQKMSKAIQNNA 354 Query 116 EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGA 175 E T + ++DECH + ++ ++ + Q G T +P Sbjct 355 EALDQYKTDKVVFIIDECHRSQFGDMHRIVRQHFNN---------AQYFGFTGTPRFEEN 405 Query 176 SKLDG 180 DG Sbjct 406 QSQDG 410 >sp|Q89AF9|DEAD_BUCBP ATP-dependent RNA helicase DeaD OS=Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) OX=224915 GN=deaD PE=3 SV=1 Length=602 Score = 46.2 bits (108), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 67/120 (56%), Gaps = 6/120 (5%) Query 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 G +++ + M Q +++ ++K +DG L++L+AT VA GLD+ + V+ Y + + S Sbjct 268 GYNSAALNGDMNQSLREQTLEKLKDGRLDILIATDVAARGLDVDRISFVINYDIPMDSES 327 Query 465 MVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIR 523 V GR RA + A + E +RE +R L N +E M +++ V + ++++ +K R Sbjct 328 YVHRIGRTGRAGRKGKALLFVE-NRE-RRLLRN--IERAMNISISEVN-LPKSDFLSKRR 382 >sp|Q4E162|IF4A_TRYCC Probable eukaryotic initiation factor 4A OS=Trypanosoma cruzi (strain CL Brener) OX=353153 GN=Tc00.1047053511585.190 PE=3 SV=1 Length=404 Score = 45.8 bits (107), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 29/105 (28%), Positives = 53/105 (50%), Gaps = 18/105 (17%) Query 362 FSSSNSPRGIIFTRTRQSAHSLLLWLQQQ--QGLQTVDIRAQLLIGAGNSSQSTHMTQRD 419 + + + + +IF TR+ WL QQ Q TV S + M ++D Sbjct 263 YETVSIAQSVIFANTRRKVD----WLAQQLNQSNHTV------------SCMHSEMPKQD 306 Query 420 QQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 +++V+ F++G+ +LV T + G+D+ H N+V+ + L TN+ S Sbjct 307 REKVMSTFRNGSSRVLVTTDLVARGIDVHHVNIVINFDLPTNKES 351 >sp|Q2UNB7|RRP3_ASPOR ATP-dependent rRNA helicase rrp3 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=rrp3 PE=3 SV=1 Length=472 Score = 46.2 bits (108), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 34/111 (31%), Positives = 52/111 (47%), Gaps = 15/111 (14%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 IIF RT L +L+ L+G G ++Q + + KF+ Sbjct 296 IIFCRTVHETQRLSFFLR--------------LLGFGAIPLHGQLSQSARLGALGKFRSR 341 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYA 480 + ++LVAT VA GLDIP +VV+ + L + + + GR ARA +S A Sbjct 342 SRDILVATDVAARGLDIPSVDVVLNFDLPGDSKTFIHRIGRTARAGKSGVA 392 >sp|Q6CXW0|DBP8_KLULA ATP-dependent RNA helicase DBP8 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=DBP8 PE=3 SV=1 Length=435 Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust. Identities = 49/184 (27%), Positives = 85/184 (46%), Gaps = 21/184 (11%) Query 346 PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 PE+ K L +IL + +S IIF +A L ++ L+++D+R Sbjct 237 PEHVKESYLYQILTSEKYVKSS--CIIFVNRTVTAEIL------RRTLKSLDVRV----- 283 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465 +S + M Q+++ +Q+F+ +L+AT VA GLDIP +VV Y + N + Sbjct 284 ---TSLHSQMPQQERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTF 340 Query 466 VQARGR-ARADQ--SVYAFVATEGSRELK--RELINEALETLMEQAVAAVQKMDQAEYQA 520 + GR ARA + FV + + ++ E IN+ +E + AV + + A Sbjct 341 IHRAGRTARAGRHGESLCFVTEKDIQRVEAIEERINKKMEEFTDVGDTAVIRKSLTKVTA 400 Query 521 KIRD 524 R+ Sbjct 401 AKRE 404 >sp|Q75EW9|RRP3_EREGS ATP-dependent rRNA helicase RRP3 OS=Eremothecium gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=RRP3 PE=3 SV=2 Length=486 Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/109 (33%), Positives = 54/109 (50%), Gaps = 17/109 (16%) Query 371 IIFTRTRQSAHSLLLWLQQQQGL-QTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD 429 I+FTRT+ +A + GL ++ A L G N +Q T + F+ Sbjct 310 IVFTRTKANAERI-------SGLCNLLEFSATALHGDLNQNQRTG--------ALDLFKA 354 Query 430 GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQS 477 G ++LVAT VA GLDIP ++V+ Y + + S + GR ARA +S Sbjct 355 GKKSILVATDVAARGLDIPSVDLVINYDIPVDSKSYIHRVGRTARAGRS 403 >sp|A1A4H6|DDX27_BOVIN Probable ATP-dependent RNA helicase DDX27 OS=Bos taurus OX=9913 GN=DDX27 PE=2 SV=1 Length=765 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/132 (29%), Positives = 66/132 (50%), Gaps = 20/132 (15%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 ++FT+T++ AH + + L GLQ ++ GN SQ+ + E +++F+D Sbjct 436 MLFTQTKKQAHRMHILLGLM-GLQVGELH-------GNLSQTQRL------EALRRFKDE 481 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR----ARADQSVYAFVATEG 486 +++LVAT VA GLDI V+ + + V GR RA +SV + E Sbjct 482 QIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVS--LVGEE 539 Query 487 SRELKRELINEA 498 R++ +E++ A Sbjct 540 ERKMLKEIVKAA 551 >sp|Q07736|T1RA_ECOLX Type I restriction enzyme EcoAI endonuclease subunit OS=Escherichia coli OX=562 GN=hsdR PE=1 SV=1 Length=810 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 51/179 (28%), Positives = 80/179 (45%), Gaps = 36/179 (20%) Query 4 RSYQWEVIMPALE----GKN-IIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVH 58 R YQ + I +E G+N +++ + TG GKT A + R ++ + +++ L +R Sbjct 171 RYYQLQAINKTIEAVSNGQNRVLLVMATGTGKTYTAFQIIWRLWKSKNKKRILFLADRNI 230 Query 59 LVTQ-HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE 117 LV Q +F+ +T +SG A HLA L A+T PEE+ Sbjct 231 LVDQTKNNDFQPFGTA---MTKVSGRTIDPAYEIHLA------------LYQAITGPEED 275 Query 118 E----HVELTVFSLIVVDECHH--THKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASP 170 + V F LIV+DECH +D+ + I+ Y Q +GLTA+P Sbjct 276 QKAFKQVAPDFFDLIVIDECHRGSASEDSAWREILD-YFSSATQ--------IGLTATP 325 >sp|Q59PR3|DBP8_CANAL ATP-dependent RNA helicase DBP8 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DBP8 PE=3 SV=1 Length=440 Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 74/164 (45%), Gaps = 25/164 (15%) Query 346 PENPKLEMLEKILQ-RQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI 404 P K L IL QF S + +IF +A L ++ L+ +D R Sbjct 234 PSYVKEAYLNSILHLEQFKDSTA---VIFVNRTTTAEVL------RRMLRKLDFRV---- 280 Query 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 +S + M Q ++ + +F+ G +L+AT VA GLDIP +V+ + + + Sbjct 281 ----ASLHSEMPQSERTNSLHRFKAGAARILIATDVASRGLDIPTVELVINFDIPADPDD 336 Query 465 MVQARGR-ARADQSVYAFVATEGSRELKR-----ELINEALETL 502 + GR ARA + A V+ G +++ R E IN+ +E L Sbjct 337 FIHRVGRTARAGRKGDA-VSIIGEKDIDRIQSIEERINKKMELL 379 >sp|Q5A4E2|DED1_CANAL ATP-dependent RNA helicase DED1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DED1 PE=3 SV=1 Length=672 Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/101 (30%), Positives = 50/101 (50%), Gaps = 14/101 (14%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 I+FT T++ A +L +L Q G I +Q ++++ + F++G Sbjct 447 IVFTETKRMADNLADYLYDQ-GFPATAIHGD-------------RSQYEREKALAAFKNG 492 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 +LVAT+VA GLDIP+ + V+ Y L ++ V GR Sbjct 493 AAPILVATAVAARGLDIPNVSHVINYDLPSDIDDYVHRIGR 533 >sp|C4K8M8|RHLB_HAMD5 ATP-dependent RNA helicase RhlB OS=Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) OX=572265 GN=rhlB PE=3 SV=1 Length=422 Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 76/185 (41%), Gaps = 44/185 (24%) Query 323 AERRLLALFDD----RKNELAHLATHGPENPKLEMLEKI---LQRQ-FSSSNSP------ 368 AE+RL LF R EL+ + PE ++E L+KI +Q + F SN Sbjct 189 AEKRLNMLFSATLSYRVRELSFEQMNHPEYIEVEPLQKIGSQIQEELFYPSNEDKMRLLQ 248 Query 369 ---------RGIIFTRTRQSAHSL---LLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT 416 R IIF T+Q + L+ + GL T D+ Sbjct 249 TLIEEEWPDRCIIFANTKQRCEDIWGHLVADGHRVGLLTGDV-----------------A 291 Query 417 QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARAD 475 QR + +++ F G L++LVAT VA GL IP V Y L N + GR RA Sbjct 292 QRKRIQILDDFSKGYLDILVATDVAARGLHIPKVTHVFNYDLPENVEDYIHRIGRTGRAG 351 Query 476 QSVYA 480 + Y+ Sbjct 352 EKGYS 356 >sp|Q9ZDW2|UVRB_RICPR UvrABC system protein B OS=Rickettsia prowazekii (strain Madrid E) OX=272947 GN=uvrB PE=3 SV=1 Length=662 Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust. Identities = 20/56 (36%), Positives = 35/56 (63%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+++ + GT+++LV ++ EG+DIP C +V + G L +E S++Q GRA Sbjct 486 EILRNLRQGTIDILVGINLLREGIDIPECGLVAILDADKEGFLRSETSLIQTIGRA 541 >sp|P09052|VASA1_DROME ATP-dependent RNA helicase vasa OS=Drosophila melanogaster OX=7227 GN=vas PE=1 SV=3 Length=661 Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/128 (25%), Positives = 61/128 (48%), Gaps = 17/128 (13%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 I+F T++ A L +L +++ T I L +QR+Q ++ F++G Sbjct 493 IVFVETKRGADFLASFLSEKE-FPTTSIHGDRL-----------QSQREQ--ALRDFKNG 538 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGRARADQSVYAFVATEGS 487 ++ +L+ATSVA GLDI + V+ Y + + + + + GR + +F E Sbjct 539 SMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKD 598 Query 488 RELKRELI 495 R + +L+ Sbjct 599 RAIAADLV 606 >sp|B7VME9|RHLB_VIBA3 ATP-dependent RNA helicase RhlB OS=Vibrio atlanticus (strain LGP32) OX=575788 GN=rhlB PE=3 SV=1 Length=436 Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust. Identities = 66/262 (25%), Positives = 110/262 (42%), Gaps = 58/262 (22%) Query 253 FGTQMYEQQVVKLSEAAAL--------AGLQEQRVYALHLRRYNDALLIHDTVRAVDALA 304 +G + Y++Q+ K+ E A + +Q+V+ L+ + A+++ + R D L Sbjct 119 YGGESYDKQLGKIEEGADILIGTTGRIIDFYKQKVFNLN---HIQAVVLDEADRMFD-LG 174 Query 305 ALQD--FYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPEN----PKLEML 354 ++D F R ++ + RL LF R ELA H PE+ P+ + Sbjct 175 FIKDIRFLFR------RMPEPKDRLNMLFSATLSYRVQELAFEHMHNPEHVVVEPERKTG 228 Query 355 EKILQRQFSSSNS---------------PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIR 399 +I + F SN R IIF T+ S+ W L R Sbjct 229 HRIQEELFYPSNEHKMALLQTLIEEEWPDRAIIFANTKHKCESV--WGH----LAADGHR 282 Query 400 AQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL 459 LL G + Q+ +++++++F G ++LLVAT VA GL IP V + L Sbjct 283 VGLLTG--------DVPQKKREKILEQFTKGDVDLLVATDVAARGLHIPQVTHVFNFDLP 334 Query 460 TNEISMVQARGR-ARADQSVYA 480 + V GR RA +S ++ Sbjct 335 DDCEDYVHRIGRTGRAGESGHS 356 >sp|Q9H0S4|DDX47_HUMAN Probable ATP-dependent RNA helicase DDX47 OS=Homo sapiens OX=9606 GN=DDX47 PE=1 SV=1 Length=455 Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 1/65 (2%) Query 414 HMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-A 472 M+Q + + KF+ ++L+AT VA GLDIPH +VVV + + T+ + GR A Sbjct 296 QMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTA 355 Query 473 RADQS 477 RA +S Sbjct 356 RAGRS 360 >sp|Q8LA13|RH11_ARATH DEAD-box ATP-dependent RNA helicase 11 OS=Arabidopsis thaliana OX=3702 GN=RH11 PE=1 SV=1 Length=612 Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/140 (29%), Positives = 64/140 (46%), Gaps = 21/140 (15%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 ++F T++ A +L WL + T S TQ++++ ++ F+ G Sbjct 412 LVFVETKRGADTLENWLCMNEFPAT--------------SIHGDRTQQEREVALRSFKTG 457 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGRARADQSVYAFVATEGS 487 +LVAT VA GLDIPH VV + L + + + + GRA AF E + Sbjct 458 RTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFF-NENN 516 Query 488 RELKR---ELINEALETLME 504 +L R EL+ EA + + E Sbjct 517 AQLARSLAELMQEANQEVPE 536 >sp|Q5VQL1|RH14_ORYSJ DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0172200 PE=2 SV=1 Length=708 Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/142 (31%), Positives = 64/142 (45%), Gaps = 21/142 (15%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K L++IL+ Q S + IIF T++ L L +Q G + G+ Sbjct 411 KSRRLDQILRSQEPGS---KIIIFCSTKRMCDQLARNLARQYGASAIH---------GDK 458 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT---NEISMV 466 SQ+ +RD V+ +F+ G +LVAT VA GLDI VVV Y T + + + Sbjct 459 SQA----ERD--SVLSEFRSGRCPILVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRI 512 Query 467 QARGRARADQSVYAFVATEGSR 488 GRA A Y F + S+ Sbjct 513 GRTGRAGATGVAYTFFCDQDSK 534 >sp|B5FF87|RHLB_ALIFM ATP-dependent RNA helicase RhlB OS=Aliivibrio fischeri (strain MJ11) OX=388396 GN=rhlB PE=3 SV=1 Length=432 Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust. Identities = 51/203 (25%), Positives = 88/203 (43%), Gaps = 37/203 (18%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +++ ++ R IIF T+ S+ W L R LL G Sbjct 243 KMALLQTLIEEEWPD----RAIIFANTKHKCESV--WGH----LAADKHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE----ISM 465 + Q+ ++ ++++F G +++LVAT VA GL IP V + L NE + Sbjct 289 ----DVPQKKRERILEEFTQGNVDILVATDVAARGLHIPQVTHVFNFD-LPNEAEDYVHR 343 Query 466 VQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK--IR 523 + GRA A + +F E + L A+E +E ++ Q++Y A + Sbjct 344 IGRTGRAGASGNSISFACEEYAINLP------AIEEYIEHSIP------QSDYDASALLE 391 Query 524 DLQQAALTKRAAQAAQRENQRQQ 546 DL +R Q +R N Q+ Sbjct 392 DLPAPLRLQRRPQQNRRNNNGQR 414 >sp|Q6CT85|RRP3_KLULA ATP-dependent rRNA helicase RRP3 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=RRP3 PE=3 SV=1 Length=487 Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 15/108 (14%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 I+FTRT+ +A + ++ A L G N +Q T + F+ G Sbjct 311 IVFTRTKANAERI------SNLCNLLEFSATALHGDLNQNQRTG--------ALDLFKAG 356 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQS 477 ++LVAT VA GLDIP ++V+ Y + + S + GR ARA +S Sbjct 357 KRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRS 404 >sp|Q5HJH8|HSDR_STAAC Type I restriction enzyme SauCOLORF180P endonuclease subunit OS=Staphylococcus aureus (strain COL) OX=93062 GN=hsdR PE=3 SV=1 Length=929 Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/187 (23%), Positives = 78/187 (42%), Gaps = 22/187 (12%) Query 1 MELRSYQWEVIMPALE-----GKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVN 55 M +R YQ + ++ G N +W TG+GKT + ++ + D KV+ LV+ Sbjct 239 MAMRPYQVYAVEALIQQATETGNNGYVWHTTGSGKTLTSFKASQILSQQDDIKKVIFLVD 298 Query 56 RVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMAL--TS 113 R L +Q EEF + G T + + + L L++ T + + A+ + Sbjct 299 RKDLDSQTEEEFNKFAKGAVDKTFNTSQLVRQLNDKSLP----LIVTTIQKMAKAIQGNA 354 Query 114 PEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTG 173 P E++ V + ++DECH + ++ ++ + Q G T +P Sbjct 355 PLLEQYKTNKV--VFIIDECHRSQFGDMHRLVKQHFKN---------AQYFGFTGTPRFP 403 Query 174 GASKLDG 180 S DG Sbjct 404 ENSSQDG 410 >sp|Q2R1M8|RH52C_ORYSJ DEAD-box ATP-dependent RNA helicase 52C OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0599500 PE=3 SV=1 Length=623 Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/124 (30%), Positives = 56/124 (45%), Gaps = 16/124 (13%) Query 359 QRQFSSSNSPR-GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ 417 QR ++ P ++F T++ A SL WL + G +S Q Sbjct 407 QRDSATPGKPTLTLVFVETKRGADSLEHWL--------------CMNGFPATSIHGDRNQ 452 Query 418 RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQ 476 ++++ ++ F+ G +LVAT VA GLDIPH VV + L + V GR RA + Sbjct 453 QEREYALRSFKSGHTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGK 512 Query 477 SVYA 480 S A Sbjct 513 SGLA 516 >sp|Q5E8U5|RHLB_ALIF1 ATP-dependent RNA helicase RhlB OS=Aliivibrio fischeri (strain ATCC 700601 / ES114) OX=312309 GN=rhlB PE=3 SV=2 Length=432 Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust. Identities = 51/203 (25%), Positives = 88/203 (43%), Gaps = 37/203 (18%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +++ ++ R IIF T+ S+ W L R LL G Sbjct 243 KMALLQTLIEEEWPD----RAIIFANTKHKCESV--WGH----LAADKHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE----ISM 465 + Q+ ++ ++++F G +++LVAT VA GL IP V + L NE + Sbjct 289 ----DVPQKKRERILEEFTQGNVDILVATDVAARGLHIPQVTHVFNFD-LPNEAEDYVHR 343 Query 466 VQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK--IR 523 + GRA A + +F E + L A+E +E ++ Q++Y A + Sbjct 344 IGRTGRAGASGNSISFACEEYAINLP------AIEEYIEHSIP------QSDYDASALLE 391 Query 524 DLQQAALTKRAAQAAQRENQRQQ 546 DL +R Q +R N Q+ Sbjct 392 DLPAPLRLQRRPQQNRRNNNGQR 414 >sp|Q9CWX9|DDX47_MOUSE Probable ATP-dependent RNA helicase DDX47 OS=Mus musculus OX=10090 GN=Ddx47 PE=2 SV=2 Length=455 Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 1/65 (2%) Query 414 HMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-A 472 M+Q + + KF+ ++L+AT VA GLDIPH +VVV + + T+ + GR A Sbjct 296 QMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTA 355 Query 473 RADQS 477 RA +S Sbjct 356 RAGRS 360 >sp|A4RK80|PRP28_PYRO7 Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Pyricularia oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 GN=PRP28 PE=3 SV=1 Length=674 Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 30/45 (67%), Gaps = 0/45 (0%) Query 414 HMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL 458 + TQ ++ +Q F+DG N+LVAT VA GLDIP ++V+ + + Sbjct 564 NKTQDQREAALQSFRDGRTNVLVATDVAARGLDIPDVSLVINFNM 608 >sp|Q6CCZ1|PRP5_YARLI Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=PRP5 PE=3 SV=1 Length=974 Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust. Identities = 59/245 (24%), Positives = 99/245 (40%), Gaps = 49/245 (20%) Query 298 RAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKI 357 R+ D+L ++ V ++I + + +F + K++ L LE+L K Sbjct 592 RSSDSLGPIEIIVGARSVVASEIT----QFVEVFQNEKSKFPRL---------LEVLGKY 638 Query 358 LQRQFSSSNS----------------PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQ 401 + F S P+ +IF ++SA SLL + Sbjct 639 FAQGFFDEQSEGRVGTGESAATPIPNPKCLIFVERQESADSLL----------------K 682 Query 402 LLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL 459 LI +G S H Q D+ + I F+ G +++L+ATSVA GLD+ +VV + Sbjct 683 ELIQSGYPCLSIHGGKEQADRDQAISDFKSGLVSVLIATSVAARGLDVKGLGLVVNWDSP 742 Query 460 TNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEY 518 + V GR RA Q A +E I+ A+++ A VQ M + + Sbjct 743 NHMEDYVHRVGRTGRAGQKGTALTFLLSDQERLAAEISRAIKSSGNAPPAPVQLMTE-RF 801 Query 519 QAKIR 523 + K+R Sbjct 802 EFKVR 806 >sp|D0PV95|DDX3_CAEEL ATP-dependent RNA helicase laf-1 OS=Caenorhabditis elegans OX=6239 GN=laf-1 PE=1 SV=1 Length=708 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/144 (26%), Positives = 67/144 (47%), Gaps = 16/144 (11%) Query 363 SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE 422 ++ +S ++F T++ A L +L +Q + V I L Q ++++ Sbjct 488 ATGDSSLTLVFVETKRGASDLAYYLNRQN-YEVVTIHGDL-------------KQFEREK 533 Query 423 VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRAR--ADQSVYA 480 + F+ GT +LVAT+VA GLDIP+ V+ Y L ++ V GR + + Sbjct 534 HLDLFRTGTAPILVATAVAARGLDIPNVKHVINYDLPSDVDEYVHRIGRTGRVGNVGLAT 593 Query 481 FVATEGSRELKRELINEALETLME 504 + +R + REL++ +E E Sbjct 594 SFFNDKNRNIARELMDLIVEANQE 617 >sp|Q09903|DRS1_SCHPO ATP-dependent RNA helicase drs1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=drs1 PE=3 SV=1 Length=754 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/124 (31%), Positives = 63/124 (51%), Gaps = 16/124 (13%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 R IIF R++ AH + + GL + + A + G+ ++Q + ++ F+ Sbjct 506 RTIIFFRSKAFAHKMRVIF----GL--LSLNATEIHGS--------LSQEQRVRALEDFR 551 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRY-GLLTNEISMVQARGRARADQSVYAF-VATEG 486 DG N L+AT VA G+DI VV+ Y T+E+ + + ARA +S A +A EG Sbjct 552 DGKCNYLLATDVASRGIDIKGIEVVINYEAPATHEVYLHRVGRTARAGRSGRAITLAGEG 611 Query 487 SREL 490 R++ Sbjct 612 DRKV 615 >sp|Q29S22|DDX47_BOVIN Probable ATP-dependent RNA helicase DDX47 OS=Bos taurus OX=9913 GN=DDX47 PE=2 SV=1 Length=457 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 1/65 (2%) Query 414 HMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-A 472 M+Q + + KF+ ++L+AT VA GLDIPH +VVV + + T+ + GR A Sbjct 298 QMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTA 357 Query 473 RADQS 477 RA +S Sbjct 358 RAGRS 362 >sp|A7MXT4|RHLB_VIBC1 ATP-dependent RNA helicase RhlB OS=Vibrio campbellii (strain ATCC BAA-1116) OX=2902295 GN=rhlB PE=3 SV=1 Length=437 Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust. Identities = 79/321 (25%), Positives = 131/321 (41%), Gaps = 65/321 (20%) Query 253 FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR-YN----DALLIHDTVRAVDALAALQ 307 +G + Y++Q+ KL + + R+ + +R +N A+++ + R D L ++ Sbjct 119 YGGESYDKQLAKLQDGVDILIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFD-LGFIK 177 Query 308 D--FYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPEN----PKLEMLEKI 357 D F R ++ + RL LF R ELA H PE+ P+ + +I Sbjct 178 DIRFLFR------RMPEPKERLNMLFSATLSYRVQELAFEHMHNPEHVVVEPEQKTGHRI 231 Query 358 LQRQFSSSNSP---------------RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL 402 + F SN R I+F T+ S+ W L R L Sbjct 232 QEELFYPSNEDKMALLQTLIEEEWPDRAIVFANTKHKCESI--WGH----LAADGHRVGL 285 Query 403 LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---L 459 L G + Q+ +++++++F G ++LLVAT VA GL IP V + L Sbjct 286 LTG--------DVPQKKREKILEQFTRGEVDLLVATDVAARGLHIPQVTHVFNFDLPDDC 337 Query 460 TNEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQ 519 + + + GRA A +F + + L +E +E A+ V D + Sbjct 338 EDYVHRIGRTGRAGASGHSISFACEDYAINLP------PIEEYIEHAI-PVSDYDAS--- 387 Query 520 AKIRDLQQAALTKRAAQAAQR 540 A I+DL A L RA + QR Sbjct 388 ALIQDL-PAPLRMRAPRTQQR 407 >sp|C4LB49|RHLB_TOLAT ATP-dependent RNA helicase RhlB OS=Tolumonas auensis (strain DSM 9187 / NBRC 110442 / TA 4) OX=595494 GN=rhlB PE=3 SV=1 Length=425 Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/114 (31%), Positives = 51/114 (45%), Gaps = 15/114 (13%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 + IIF T+ + WLQ R LL G + Q+ + ++++ F Sbjct 258 KAIIFANTKHGCEDVHAWLQADGH------RVGLLTG--------DVPQKKRLKILEDFT 303 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF 481 G L++LVAT VA GL IP + V Y L + V GR RA +S +A Sbjct 304 AGLLDVLVATDVAARGLHIPDVSHVFNYDLPDDAEDYVHRIGRTGRAGRSGHAI 357 >sp|Q2JRR3|UVRB_SYNJA UvrABC system protein B OS=Synechococcus sp. (strain JA-3-3Ab) OX=321327 GN=uvrB PE=3 SV=1 Length=695 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 57/109 (52%), Gaps = 19/109 (17%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 R I+ T T++ A L +LQ++ IR + L + ++ ++ E++Q F+ Sbjct 472 RVIVTTLTKRMAEDLTEYLQER------GIRVRYL--------HSEISSIERIEILQDFR 517 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 +G ++LV ++ EGLD+P ++V + G L E S++Q GRA Sbjct 518 EGAFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQMIGRA 566 >sp|P0CQ79|DBP3_CRYNB ATP-dependent RNA helicase DBP3 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=DBP3 PE=3 SV=1 Length=605 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/154 (27%), Positives = 69/154 (45%), Gaps = 14/154 (9%) Query 385 LWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEG 444 L+ ++ Q L+ RA +GA + MTQ + + ++ F+ G N+LVAT VA G Sbjct 447 LYKKEAQRLEYTIRRAGYAVGALHGD----MTQEARFKALEAFKTGQQNVLVATDVAARG 502 Query 445 LDIPHCNVV--VRYGLLTNEISMVQAR-GRA-RADQSVYAFVATEGSRELKREL------ 494 LDIP +V V + L T + R GRA + ++V F + L E Sbjct 503 LDIPDVGLVINVTFPLTTEDFVHRCGRTGRAGKTGKAVTFFTGENHEKSLAGEFMRVLRD 562 Query 495 INEALETLMEQAVAAVQKMDQAEYQAKIRDLQQA 528 + + M++ ++K + Y A ++ A Sbjct 563 VGAEIPKEMDRFPTTIKKKEHGSYGAFYKETSNA 596 >sp|Q81IT9|CSHA_BACCR DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711) OX=226900 GN=cshA PE=2 SV=2 Length=533 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 55/208 (26%), Positives = 95/208 (46%), Gaps = 34/208 (16%) Query 347 ENPKLEMLEKILQRQFSSSNSPR-GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 E K ++L ++L Q SP I+F RT++ VD ++ L Sbjct 224 EKKKFDVLTRLLDIQ-----SPELAIVFGRTKRR----------------VDELSEALNL 262 Query 406 AGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI 463 G +++ H +TQ + V++KF++G++ +LVAT VA GLDI V + + + Sbjct 263 RGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPE 322 Query 464 SMVQARGR-ARADQSVYA--FVATEGSRELK------RELINEALETLMEQAVAAVQKMD 514 S V GR RA + A FV S +LK + ++ +++A+ Q++ Sbjct 323 SYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLI 382 Query 515 QAEYQAKIRDLQQAALTKRAAQAAQREN 542 + Q+ I + + A KR A+ EN Sbjct 383 AEKLQSTIEN-ENLAYYKRIAEEMLEEN 409 >sp|Q2H1Q8|RRP3_CHAGB ATP-dependent rRNA helicase RRP3 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=RRP3 PE=3 SV=1 Length=493 Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 15/112 (13%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 IIFTRT + + L+ +G G ++Q + + KF+ G Sbjct 309 IIFTRTVIETQRIAILLRT--------------LGMGAIPLHGGLSQSARLGALNKFRAG 354 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF 481 + ++LVAT VA GLDIP+ + V+ L + + V GR ARA +S +A Sbjct 355 SRDILVATDVAARGLDIPNVDCVLNLDLPGDSKTYVHRVGRTARAGRSGHAI 406 >sp|Q6BPT8|DBP6_DEBHA ATP-dependent RNA helicase DBP6 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DBP6 PE=3 SV=2 Length=576 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/130 (27%), Positives = 63/130 (48%), Gaps = 9/130 (7%) Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 ST+ T + ++++ F T+N+LVAT + G+DI V+ Y L + V GR Sbjct 446 STNNTTSVRSKILKDFSKQTINILVATDLIARGIDILSITDVINYDLPNSSREYVHRVGR 505 Query 472 -ARADQSVYAFVATEGSRELK--RELINEA------LETLMEQAVAAVQKMDQAEYQAKI 522 ARA+Q +A+ G E K ++L+ + +E L ++ D++ Y+ + Sbjct 506 TARANQEGFAYNFCFGKGEAKWFKKLMAQVGRSEKNIEELELDTKQLIEDNDESMYKESL 565 Query 523 RDLQQAALTK 532 +LQQ + Sbjct 566 DELQQQVFNR 575 >sp|Q9DF36|DD21B_XENLA Nucleolar RNA helicase 2-B OS=Xenopus laevis OX=8355 GN=ddx21-b PE=2 SV=2 Length=800 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/135 (29%), Positives = 65/135 (48%), Gaps = 16/135 (12%) Query 338 LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD 397 + HLA + K +L I+Q +S S+ + IIF ++ AH L ++ Sbjct 446 VEHLAIECNRSQKAAVLGDIVQ-VYSGSHG-KTIIFCDSKLQAHEL------STNCGSLK 497 Query 398 IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG 457 A+ L G + Q++++ V++ F+ GT +L+AT+VA GLDIP ++VV Y Sbjct 498 QSAKPLHG--------DLQQKEREVVLKGFRQGTFEVLIATNVAARGLDIPEVDLVVLYS 549 Query 458 LLTNEISMVQARGRA 472 + V GR Sbjct 550 APKEADAYVHRSGRT 564 >sp|A0KEG9|RHLB_AERHH ATP-dependent RNA helicase RhlB OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB 9240 / NCTC 8049) OX=380703 GN=rhlB PE=3 SV=1 Length=429 Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 49/110 (45%), Gaps = 15/110 (14%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 + I+F T+ + WL+ R LL G + Q+ + ++++ F Sbjct 258 KAIVFANTKHVCEDVHAWLENDGH------RVGLLTG--------DVPQKKRMKILEDFT 303 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQS 477 GT+++LVAT VA GL IP V Y L + V GR RA +S Sbjct 304 KGTVDILVATDVAARGLHIPDVTHVFNYDLPDDAEDYVHRIGRTGRAGKS 353 >sp|Q4TVV3|DDX46_DANRE Probable ATP-dependent RNA helicase DDX46 OS=Danio rerio OX=7955 GN=ddx46 PE=2 SV=1 Length=1018 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/113 (33%), Positives = 55/113 (49%), Gaps = 7/113 (6%) Query 378 QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLL 435 Q S+++++ +Q+ D + L+ A S H + Q D+ +I F++G LL Sbjct 585 QEKGSVIIFVDKQE---HADGLLKDLMKASYPCMSLHGGIDQYDRDSIINDFKNGACRLL 641 Query 436 VATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFV-ATEG 486 VATSVA GLD+ +VV Y + V GR RA YA+ TEG Sbjct 642 VATSVAARGLDVKQLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEG 694 >sp|A7TS37|RRP3_VANPO ATP-dependent rRNA helicase RRP3 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 GN=RRP3 PE=3 SV=1 Length=506 Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 15/108 (14%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 I+FTRT+ +A + ++ A L G N +Q T + F+ G Sbjct 330 IVFTRTKANAERITTLAN------LLEFSATALHGDLNQNQRTGS--------LDLFKAG 375 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQS 477 ++LVAT VA GLDIP ++V+ Y + + S + GR ARA +S Sbjct 376 RRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRS 423 >sp|P34580|DDX47_CAEEL Putative ATP-dependent RNA helicase T26G10.1 OS=Caenorhabditis elegans OX=6239 GN=T26G10.1 PE=3 SV=1 Length=489 Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 15/112 (13%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 I+F T + + + L+Q G+Q V + Q M+Q + + KF+ Sbjct 287 IVFCATCATTMQIAVMLRQL-GMQAVPLHGQ-------------MSQEKRLGSLNKFKSK 332 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF 481 +LV T VA GLDIPH ++V+ Y + + V GR ARA +S A Sbjct 333 AREILVCTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGIAI 384 >sp|Q7SBC6|DBP2_NEUCR ATP-dependent RNA helicase dbp2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=drh-1 PE=3 SV=2 Length=562 Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 72/148 (49%), Gaps = 21/148 (14%) Query 351 LEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSS 410 ++ LEKI++ N + +IFT T++ A + +L+Q G + I G+ Sbjct 368 IKHLEKIME---GRENQNKILIFTGTKRVADDITRFLRQD-GWPALSIH-------GDKQ 416 Query 411 QSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE---ISMVQ 467 Q+ +RD V+ +F+ G ++VAT VA G+D+ + V+ Y N I + Sbjct 417 QN----ERDW--VLDQFKTGKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIG 470 Query 468 ARGRARADQSVYAFVATEGSRELKRELI 495 GRA A + F T+ S++ REL+ Sbjct 471 RTGRAGAKGTAITFFTTDNSKQ-ARELV 497 >sp|Q6HPE6|CSHA_BACHK DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) OX=281309 GN=cshA PE=3 SV=1 Length=528 Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust. Identities = 55/208 (26%), Positives = 95/208 (46%), Gaps = 34/208 (16%) Query 347 ENPKLEMLEKILQRQFSSSNSPR-GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 E K ++L ++L Q SP I+F RT++ VD ++ L Sbjct 224 EKKKFDVLTRLLDIQ-----SPELAIVFGRTKRR----------------VDELSEALNL 262 Query 406 AGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI 463 G +++ H +TQ + V++KF++G++ +LVAT VA GLDI V + + + Sbjct 263 RGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPE 322 Query 464 SMVQARGR-ARADQSVYA--FVATEGSRELK------RELINEALETLMEQAVAAVQKMD 514 S V GR RA + A FV S +LK + ++ +++A+ Q++ Sbjct 323 SYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLI 382 Query 515 QAEYQAKIRDLQQAALTKRAAQAAQREN 542 + Q+ I + + A KR A+ EN Sbjct 383 AEKLQSTIEN-ENLAYYKRIAEEMLEEN 409 >sp|Q81VG0|CSHA_BACAN DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus anthracis OX=1392 GN=cshA PE=3 SV=1 Length=528 Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust. Identities = 55/208 (26%), Positives = 95/208 (46%), Gaps = 34/208 (16%) Query 347 ENPKLEMLEKILQRQFSSSNSPR-GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 E K ++L ++L Q SP I+F RT++ VD ++ L Sbjct 224 EKKKFDVLTRLLDIQ-----SPELAIVFGRTKRR----------------VDELSEALNL 262 Query 406 AGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI 463 G +++ H +TQ + V++KF++G++ +LVAT VA GLDI V + + + Sbjct 263 RGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPE 322 Query 464 SMVQARGR-ARADQSVYA--FVATEGSRELK------RELINEALETLMEQAVAAVQKMD 514 S V GR RA + A FV S +LK + ++ +++A+ Q++ Sbjct 323 SYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLI 382 Query 515 QAEYQAKIRDLQQAALTKRAAQAAQREN 542 + Q+ I + + A KR A+ EN Sbjct 383 AEKLQSTIEN-ENLAYYKRIAEEMLEEN 409 >sp|A0R8U6|CSHA_BACAH DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus thuringiensis (strain Al Hakam) OX=412694 GN=cshA PE=3 SV=1 Length=528 Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust. Identities = 55/208 (26%), Positives = 95/208 (46%), Gaps = 34/208 (16%) Query 347 ENPKLEMLEKILQRQFSSSNSPR-GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 E K ++L ++L Q SP I+F RT++ VD ++ L Sbjct 224 EKKKFDVLTRLLDIQ-----SPELAIVFGRTKRR----------------VDELSEALNL 262 Query 406 AGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI 463 G +++ H +TQ + V++KF++G++ +LVAT VA GLDI V + + + Sbjct 263 RGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPE 322 Query 464 SMVQARGR-ARADQSVYA--FVATEGSRELK------RELINEALETLMEQAVAAVQKMD 514 S V GR RA + A FV S +LK + ++ +++A+ Q++ Sbjct 323 SYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLI 382 Query 515 QAEYQAKIRDLQQAALTKRAAQAAQREN 542 + Q+ I + + A KR A+ EN Sbjct 383 AEKLQSTIEN-ENLAYYKRIAEEMLEEN 409 >sp|P0CQ78|DBP3_CRYNJ ATP-dependent RNA helicase DBP3 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=DBP3 PE=3 SV=1 Length=605 Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/154 (27%), Positives = 69/154 (45%), Gaps = 14/154 (9%) Query 385 LWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEG 444 L+ ++ Q L+ RA +GA + MTQ + + ++ F+ G N+LVAT VA G Sbjct 447 LYKKEAQRLEYTIRRAGYAVGALHGD----MTQEARFKALEAFKTGQQNVLVATDVAARG 502 Query 445 LDIPHCNVV--VRYGLLTNEISMVQAR-GRA-RADQSVYAFVATEGSRELKREL------ 494 LDIP +V V + L T + R GRA + ++V F + L E Sbjct 503 LDIPDVGLVINVTFPLTTEDFVHRCGRTGRAGKTGKAVTFFTGENHEKSLAGEFMRVLRD 562 Query 495 INEALETLMEQAVAAVQKMDQAEYQAKIRDLQQA 528 + + M++ ++K + Y A ++ A Sbjct 563 VGAEIPKEMDRFPTTIKKKEHGSYGAFYKETTNA 596 >sp|Q68XG5|UVRB_RICTY UvrABC system protein B OS=Rickettsia typhi (strain ATCC VR-144 / Wilmington) OX=257363 GN=uvrB PE=3 SV=1 Length=662 Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust. Identities = 19/56 (34%), Positives = 35/56 (63%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+++ + G +++LV ++ EG+DIP C +V + G L +E+S++Q GRA Sbjct 486 EILRDLRQGNIDILVGINLLREGIDIPECGLVAILDADKEGFLRSEVSLIQTIGRA 541 >sp|A3LQ01|DED1_PICST ATP-dependent RNA helicase DED1 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) OX=322104 GN=DED1 PE=3 SV=3 Length=647 Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 56/120 (47%), Gaps = 14/120 (12%) Query 352 EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ 411 E + +L S+ ++ IIFT T++ A +L +L Q G I Sbjct 410 EEKKSVLLDLLSAGDAGLTIIFTETKRMADNLADFLYDQ-GFPATAIHGD---------- 458 Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 +Q ++++ + F+ G +LVAT+VA GLDIP+ V+ Y L ++ V GR Sbjct 459 ---RSQYEREKALAAFKSGAAPILVATAVAARGLDIPNVAHVINYDLPSDIDDYVHRIGR 515 >sp|P24783|DBP2_YEAST ATP-dependent RNA helicase DBP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DBP2 PE=1 SV=1 Length=546 Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/83 (33%), Positives = 48/83 (58%), Gaps = 4/83 (5%) Query 417 QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY---GLLTNEISMVQARGRAR 473 QR++ V+Q+F++G ++VAT VA G+D+ N V+ Y G + + + + GRA Sbjct 396 QRERDWVLQEFRNGRSPIMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAG 455 Query 474 ADQSVYAFVATEGSRELKRELIN 496 A + +F TE ++ L +LI+ Sbjct 456 ATGTAISFF-TEQNKGLGAKLIS 477 >sp|Q75B50|DED1_EREGS ATP-dependent RNA helicase DED1 OS=Eremothecium gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=DED1 PE=3 SV=2 Length=623 Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 46/84 (55%), Gaps = 4/84 (5%) Query 416 TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGRA 472 TQ +++ + F+ G N+LVAT+VA GLDIP+ V+ Y L + + + + GRA Sbjct 437 TQAERERALAFFRTGRANVLVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRA 496 Query 473 RADQSVYAFVATEGSRELKRELIN 496 AF G++ + +EL++ Sbjct 497 GNTGLATAFF-NRGNKNVVKELVD 519 >sp|A6ZRX0|DBP2_YEAS7 ATP-dependent RNA helicase DBP2 OS=Saccharomyces cerevisiae (strain YJM789) OX=307796 GN=DBP2 PE=3 SV=1 Length=546 Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/83 (33%), Positives = 48/83 (58%), Gaps = 4/83 (5%) Query 417 QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY---GLLTNEISMVQARGRAR 473 QR++ V+Q+F++G ++VAT VA G+D+ N V+ Y G + + + + GRA Sbjct 396 QRERDWVLQEFRNGRSPIMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAG 455 Query 474 ADQSVYAFVATEGSRELKRELIN 496 A + +F TE ++ L +LI+ Sbjct 456 ATGTAISFF-TEQNKGLGAKLIS 477 >sp|Q59W52|PRP28_CANAL Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=PRP28 PE=3 SV=2 Length=581 Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 17/160 (11%) Query 331 FDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQ 390 D+ L++ E K L KI++ + + +P IIF + SL Sbjct 405 LDNISQSFEFLSSATTEATKFNKLIKIIRSHWRVTENPLIIIFANFKHVCDSL------S 458 Query 391 QGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHC 450 Q L + DI ++ G S+S M +++ I F++ +L+AT VA G+DIP+ Sbjct 459 QELSSNDINNVVIHG----SKSQDM----REQAITNFRNHESEVLIATDVAARGIDIPNV 510 Query 451 NVVVRYGLLTN---EISMVQARGRARADQSVYAFVATEGS 487 +V+ Y ++ I + GRA + F++ + + Sbjct 511 TLVINYQMVKKFDEYIHRIGRTGRAGNLGESFTFISDQDT 550 >sp|Q63GX5|CSHA_BACCZ DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus cereus (strain ZK / E33L) OX=288681 GN=cshA PE=3 SV=1 Length=528 Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust. Identities = 55/208 (26%), Positives = 95/208 (46%), Gaps = 34/208 (16%) Query 347 ENPKLEMLEKILQRQFSSSNSPR-GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 E K ++L ++L Q SP I+F RT++ VD ++ L Sbjct 224 EKKKFDVLTRLLDIQ-----SPELAIVFGRTKRR----------------VDELSEALNL 262 Query 406 AGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI 463 G +++ H +TQ + V++KF++G++ +LVAT VA GLDI V + + + Sbjct 263 RGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPE 322 Query 464 SMVQARGR-ARADQSVYA--FVATEGSRELK------RELINEALETLMEQAVAAVQKMD 514 S V GR RA + A FV S +LK + ++ +++A+ Q++ Sbjct 323 SYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLI 382 Query 515 QAEYQAKIRDLQQAALTKRAAQAAQREN 542 + Q+ I + + A KR A+ EN Sbjct 383 AEKLQSTIEN-ENLAYYKRIAEEMLEEN 409 >sp|Q465R3|HELS_METBF ATP-dependent DNA helicase Hel308 OS=Methanosarcina barkeri (strain Fusaro / DSM 804) OX=269797 GN=hel308 PE=3 SV=1 Length=729 Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust. Identities = 47/176 (27%), Positives = 79/176 (45%), Gaps = 20/176 (11%) Query 1 MELRSYQWEVIMPAL-EGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHL 59 MEL Q E + L EG+N++ +PT +GKT A + + + G K + +V L Sbjct 22 MELYPPQAEAVEKGLLEGRNLLAAIPTASGKTLLAELAMLKSI--LAGGKALYIVPLRAL 79 Query 60 VTQHGEEFRRMLDGRWTVTTLSGDMGPR-AGFGHLARCHDLLICTAELLQMALTSPEEEE 118 ++ FR + V +GD R G G +D+++ T+E L + E Sbjct 80 ASEKFRRFREFSELGIRVGISTGDYDLRDEGLG----VNDIIVATSEKTDSLLRN----E 131 Query 119 HVELTVFSLIVVDECH---HTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPG 171 V + S++V DE H + V ++ KL++ P Q+L L+A+ G Sbjct 132 TVWMQEISVVVADEVHLIDSPDRGPTLEVTLA-----KLRKMNPSCQILALSATVG 182 >sp|Q0I1X0|RHLB_HISS1 ATP-dependent RNA helicase RhlB OS=Histophilus somni (strain 129Pt) OX=205914 GN=rhlB PE=3 SV=1 Length=419 Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust. Identities = 55/203 (27%), Positives = 87/203 (43%), Gaps = 32/203 (16%) Query 346 PEN-PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI 404 P N K+ +L +L+ ++ R IIF+ T+ + +L R LL Sbjct 236 PSNQDKMALLMTLLEEEWPE----RCIIFSNTKHRCEEIWGYLSADGH------RVGLLT 285 Query 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 G + Q+ + ++++F DGTL++LVAT VA GL IP V Y L + Sbjct 286 G--------DVMQKKRLSLLKQFTDGTLDILVATDVAARGLHIPDVTHVFNYDLPDDCED 337 Query 465 MVQARGR-ARADQS--VYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK 521 V GR RA +S +F E + L A+E + ++ + Q + +A Sbjct 338 YVHRIGRTGRAGESGISISFACEEYAINLP------AIEEYIGHSIP----VSQYDAKAL 387 Query 522 IRDLQQAALTKRAAQAAQRENQR 544 I DL KR A ++ QR Sbjct 388 IEDLPTPHRIKRGAFDSRSNLQR 410 >sp|Q8CMT1|MFD_STAES Transcription-repair-coupling factor OS=Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200) OX=176280 GN=mfd PE=3 SV=1 Length=1169 Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/97 (31%), Positives = 52/97 (54%), Gaps = 11/97 (11%) Query 414 HMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQA 468 MT+RD +E + F + ++LV T++ E G+D+P+ N ++ R+GL + Q Sbjct 863 QMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIEEADRFGLS----QLYQL 918 Query 469 RGR-ARADQSVYAFVATEGSRELKRELINEALETLME 504 RGR R+ + YA+ ++ L E E L+T+ E Sbjct 919 RGRVGRSSRIGYAYFLHPANKVLN-ETAEERLQTIKE 954 >sp|P16381|DDX3L_MOUSE Putative ATP-dependent RNA helicase Pl10 OS=Mus musculus OX=10090 GN=D1Pas1 PE=1 SV=1 Length=660 Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/91 (30%), Positives = 51/91 (56%), Gaps = 5/91 (5%) Query 383 LLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSV 440 +L++++ ++G +++ L G + S H +QRD++E + +F+ G +LVAT+V Sbjct 443 ILVFVETKKGADSLE---DFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAV 499 Query 441 AEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 A GLDI + V+ + L ++ V GR Sbjct 500 AARGLDISNVKHVINFDLPSDIEEYVHRIGR 530 >sp|Q7SEL0|PRP28_NEUCR Pre-mRNA-splicing ATP-dependent RNA helicase prp-28 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=prp-28 PE=3 SV=1 Length=728 Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 48/89 (54%), Gaps = 3/89 (3%) Query 397 DIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV 454 D+ A+ + G G S+ + H TQ ++ + ++G ++LVAT +A G+D+P ++VV Sbjct 580 DMVARDIKGMGYSAVTLHGSKTQEQREAALASLRNGQTDILVATDLAGRGIDVPDVSLVV 639 Query 455 RYGLLTNEISMVQARGR-ARADQSVYAFV 482 + + TN S GR RA +S A Sbjct 640 NFNMATNIESYTHRIGRTGRAGKSGVAIT 668 >sp|Q6FLF3|DBP2_CANGA ATP-dependent RNA helicase DBP2 OS=Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DBP2 PE=3 SV=1 Length=544 Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/95 (32%), Positives = 51/95 (54%), Gaps = 7/95 (7%) Query 417 QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY---GLLTNEISMVQARGRAR 473 QR++ V+ +F+ G ++VAT VA G+D+ N VV Y G + + + + GRA Sbjct 393 QRERDWVLNEFRTGNSPIMVATDVAARGIDVKGINFVVNYDMPGNIEDYVHRIGRTGRAG 452 Query 474 ADQSVYAFVATEGSRELKRELIN---EALETLMEQ 505 A + +F TE ++ L LI+ EA + + E+ Sbjct 453 ATGTAISFF-TEDNKSLGASLISIMREAKQNIPEE 486 >sp|B0UUZ9|RHLB_HISS2 ATP-dependent RNA helicase RhlB OS=Histophilus somni (strain 2336) OX=228400 GN=rhlB PE=3 SV=1 Length=419 Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust. Identities = 55/203 (27%), Positives = 87/203 (43%), Gaps = 32/203 (16%) Query 346 PEN-PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI 404 P N K+ +L +L+ ++ R IIF+ T+ + +L R LL Sbjct 236 PSNQDKMALLMTLLEEEWPE----RCIIFSNTKHRCEEIWGYLSADGH------RVGLLT 285 Query 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 G + Q+ + ++++F DGTL++LVAT VA GL IP V Y L + Sbjct 286 G--------DVMQKKRLSLLKQFTDGTLDVLVATDVAARGLHIPDVTHVFNYDLPDDCED 337 Query 465 MVQARGR-ARADQS--VYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK 521 V GR RA +S +F E + L A+E + ++ + Q + +A Sbjct 338 YVHRIGRTGRAGESGISISFACEEYAINLP------AIEEYIGHSIP----VSQYDAKAL 387 Query 522 IRDLQQAALTKRAAQAAQRENQR 544 I DL KR A ++ QR Sbjct 388 IEDLPTPHRIKRGAFDSRSNLQR 410 >sp|Q5AWA6|DBP3_EMENI ATP-dependent RNA helicase dbp3 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=dbp3 PE=3 SV=2 Length=488 Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 58/122 (48%), Gaps = 12/122 (10%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL-LTNE--ISMVQARGR 471 ++Q+++ ++ F+ G +LVAT VA GLDIPH +VV LT E + + GR Sbjct 357 LSQQERFRSLEAFKSGAATVLVATDVAARGLDIPHVKLVVNVTFPLTVEDYVHRIGRTGR 416 Query 472 ARADQSVYAFVATEGSRELKRELIN-------EALETLMEQAVAAVQKMDQAEYQAKIRD 524 A AD TE + LIN E E L++ + V+K Y A +D Sbjct 417 AGADGHAITLF-TETDKAQSGALINVLKAANQEVPEALLKFG-STVKKKQHDAYGAFFKD 474 Query 525 LQ 526 ++ Sbjct 475 VE 476 >sp|Q9P7C7|PRP11_SCHPO Pre-mRNA-processing ATP-dependent RNA helicase prp11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=prp11 PE=1 SV=1 Length=1014 Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust. Identities = 43/190 (23%), Positives = 81/190 (43%), Gaps = 30/190 (16%) Query 336 NELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQT 395 +E+ + PE K L ++L +++ R ++F ++SA +LL L ++ Sbjct 637 SEVEQIVEVRPEESKFSRLLELLGELYNNQLDVRTLVFVDRQESADALLSDLMKR----- 691 Query 396 VDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV 453 G +S S H Q D+ I ++ G ++L+ATSV GLD+ +V Sbjct 692 -----------GYTSNSIHGGKDQHDRDSTISDYKAGVFDVLIATSVVARGLDVKSLQLV 740 Query 454 VRYGL---LTNEISMVQARGRARADQSVYAFVATEGSR---------ELKRELINEALET 501 V Y + + + V GRA F+ E + ++ ++ + + L+T Sbjct 741 VNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFITPEQEKYAVDIAKALKMSKQPVPKELQT 800 Query 502 LMEQAVAAVQ 511 L Q + V+ Sbjct 801 LASQFLEKVK 810 >sp|Q6DRI7|DDX51_DANRE ATP-dependent RNA helicase DDX51 OS=Danio rerio OX=7955 GN=ddx51 PE=2 SV=1 Length=652 Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust. Identities = 34/132 (26%), Positives = 64/132 (48%), Gaps = 19/132 (14%) Query 351 LEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSS 410 L +L +L+ +FS + + FT +R+ AH L L ++ G++ + ++L G Sbjct 479 LIILHFLLRLKFSPA-----LCFTNSREGAHRLYLLVKLFGGVEVAEFSSKLSPG----- 528 Query 411 QSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARG 470 ++Q+ ++ F+ G + LL++T A G+DI V+ Y + + G Sbjct 529 --------ERQKTLKDFEKGKIPLLISTDAAARGIDINGVKCVINYDAPQYIRTYIHRVG 580 Query 471 R-ARADQSVYAF 481 R ARA ++ AF Sbjct 581 RTARAGKAGLAF 592 >sp|Q4PFD9|PRP5_USTMA Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Ustilago maydis (strain 521 / FGSC 9021) OX=237631 GN=PRP5 PE=3 SV=1 Length=1156 Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust. Identities = 43/154 (28%), Positives = 67/154 (44%), Gaps = 22/154 (14%) Query 347 ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA 406 E+ K L +IL ++ R +IF +++A LL + LI Sbjct 707 EDTKFHRLLEILGELYNREKDARTLIFVDRQEAADDLL----------------KDLIRK 750 Query 407 GNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 G + S H Q D+ E I F+ G + ++ ATSVA GLD+ +V+ Y + + Sbjct 751 GYVTMSLHGGKDQVDRDETISDFKAGNVPIVTATSVAARGLDVKQLKLVINYDVPNHMED 810 Query 465 MVQARGR-ARADQ--SVYAFVATEGSRELKRELI 495 V GR RA Q + F+ E R R++I Sbjct 811 YVHRAGRTGRAGQKGTCITFITPEQDR-YARDII 843 >sp|C3LQR1|RHLB_VIBCM ATP-dependent RNA helicase RhlB OS=Vibrio cholerae serotype O1 (strain M66-2) OX=579112 GN=rhlB PE=3 SV=1 Length=438 Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust. Identities = 40/161 (25%), Positives = 71/161 (44%), Gaps = 27/161 (17%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +++ ++ R IIF T+ + W L + R LL G Sbjct 243 KMALLQTLIEEEWPD----RAIIFANTKHRCEQI--WAH----LAADNHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMV 466 + Q+ ++ ++++F G +++LVAT VA GL IP V Y L + + + Sbjct 289 ----DVPQKKRERILEQFTQGDVDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRI 344 Query 467 QARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAV 507 GRA A +F E + L A+E+ +E A+ Sbjct 345 GRTGRAGASGHSISFACEEYAINLP------AIESYIEHAI 379 >sp|Q9KV52|RHLB_VIBCH ATP-dependent RNA helicase RhlB OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) OX=243277 GN=rhlB PE=3 SV=1 Length=438 Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust. Identities = 40/161 (25%), Positives = 71/161 (44%), Gaps = 27/161 (17%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +++ ++ R IIF T+ + W L + R LL G Sbjct 243 KMALLQTLIEEEWPD----RAIIFANTKHRCEQI--WAH----LAADNHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMV 466 + Q+ ++ ++++F G +++LVAT VA GL IP V Y L + + + Sbjct 289 ----DVPQKKRERILEQFTQGDVDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRI 344 Query 467 QARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAV 507 GRA A +F E + L A+E+ +E A+ Sbjct 345 GRTGRAGASGHSISFACEEYAINLP------AIESYIEHAI 379 >sp|A5F3R4|RHLB_VIBC3 ATP-dependent RNA helicase RhlB OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395) OX=345073 GN=rhlB PE=3 SV=1 Length=438 Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust. Identities = 40/161 (25%), Positives = 71/161 (44%), Gaps = 27/161 (17%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +++ ++ R IIF T+ + W L + R LL G Sbjct 243 KMALLQTLIEEEWPD----RAIIFANTKHRCEQI--WAH----LAADNHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMV 466 + Q+ ++ ++++F G +++LVAT VA GL IP V Y L + + + Sbjct 289 ----DVPQKKRERILEQFTQGDVDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRI 344 Query 467 QARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAV 507 GRA A +F E + L A+E+ +E A+ Sbjct 345 GRTGRAGASGHSISFACEEYAINLP------AIESYIEHAI 379 >sp|Q4X195|DBP2_ASPFU ATP-dependent RNA helicase dbp2 OS=Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293) OX=330879 GN=dbp2 PE=3 SV=2 Length=547 Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust. Identities = 40/150 (27%), Positives = 70/150 (47%), Gaps = 27/150 (18%) Query 351 LEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSS 410 ++ LEKI++ + S + +IFT T++ A + +L+Q G + Sbjct 357 IKHLEKIME-----NRSNKCLIFTGTKRIADEITRFLRQD----------------GWPA 395 Query 411 QSTHMTQRDQQE--VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE---ISM 465 S H ++ Q+ V+ +F+ G ++VAT VA G+D+ V+ Y N I Sbjct 396 LSIHGDKQQQERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYIHR 455 Query 466 VQARGRARADQSVYAFVATEGSRELKRELI 495 + GRA A + F TE S++ R+L+ Sbjct 456 IGRTGRAGAKGTAITFFTTENSKQ-ARDLV 484 >sp|Q7V9M1|UVRB_PROMA UvrABC system protein B OS=Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) OX=167539 GN=uvrB PE=3 SV=1 Length=677 Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 22/126 (17%) Query 352 EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ 411 ++L++I +R S R +I T T++ A L +L + D+R + L Sbjct 432 DLLDEIRER---SRKKQRVLITTLTKRMAEDLTDYLSEN------DVRVRYL------HS 476 Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMV 466 H +R E+IQ + G ++LV ++ EGLD+P ++VV + G L E S++ Sbjct 477 EIHSIER--IEIIQDLRMGEYDVLVGVNLLREGLDLPEVSLVVILDADKEGFLRAERSLI 534 Query 467 QARGRA 472 Q GRA Sbjct 535 QTIGRA 540 >sp|A6VKC3|RHLB_ACTSZ ATP-dependent RNA helicase RhlB OS=Actinobacillus succinogenes (strain ATCC 55618 / DSM 22257 / CCUG 43843 / 130Z) OX=339671 GN=rhlB PE=3 SV=1 Length=413 Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust. Identities = 38/132 (29%), Positives = 59/132 (45%), Gaps = 25/132 (19%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQ---QQQGLQTVDIRAQLLIGA 406 K+ +L +L+ ++ R IIF T+ + +L Q+ GL T D+ Sbjct 241 KMALLMTLLEEEWPE----RCIIFANTKHRCEEIWGYLAADGQRVGLLTGDV-------- 288 Query 407 GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV 466 Q+ + ++++F DG L++LVAT VA GL IP V Y L + V Sbjct 289 ---------AQKKRLALLKQFTDGELDILVATDVAARGLHIPDVTHVFNYDLPDDREDYV 339 Query 467 QARGR-ARADQS 477 GR RA +S Sbjct 340 HRIGRTGRAGES 351 >sp|A5DZE6|DED1_LODEL ATP-dependent RNA helicase DED1 OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) OX=379508 GN=DED1 PE=3 SV=1 Length=664 Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/101 (30%), Positives = 49/101 (49%), Gaps = 14/101 (14%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 I+FT T++ A +L +L Q G I +Q ++++ + F+ G Sbjct 436 IVFTETKRMADNLADFLYDQ-GFPATAIHGD-------------RSQYEREKALAAFKSG 481 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 +LVAT+VA GLDIP+ + V+ Y L ++ V GR Sbjct 482 QAPILVATAVAARGLDIPNVSHVINYDLPSDIDDYVHRIGR 522 >sp|Q7A801|HSDR_STAAN Type I restriction enzyme SauN315I endonuclease subunit OS=Staphylococcus aureus (strain N315) OX=158879 GN=hsdR PE=1 SV=1 Length=929 Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust. Identities = 43/188 (23%), Positives = 75/188 (40%), Gaps = 24/188 (13%) Query 1 MELRSYQWEVIMPALE-----GKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVN 55 M +R YQ + ++ G N +W TG+GKT + ++ + D KV+ LV+ Sbjct 239 MAMRPYQVYAVEALIQQATETGNNGYVWHTTGSGKTLTSFKASQILSQQDDIKKVIFLVD 298 Query 56 RVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE 115 R L +Q EEF + G T + + + L L++ T + + A+ Sbjct 299 RKDLDSQTEEEFNKFAKGAVDKTFNTSQLVRQLNDKSLP----LIVTTIQKMAKAIQGNA 354 Query 116 ---EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGT 172 E+ VF ++DECH + ++ ++ + Q G T +P Sbjct 355 HLLEQYKTNKVVF---IIDECHRSQFGDMHRLVKQHFKN---------AQYFGFTGTPRF 402 Query 173 GGASKLDG 180 S DG Sbjct 403 PENSSQDG 410 >sp|Q99X26|HSDR_STAAM Type I restriction enzyme SauMu50ORF195P endonuclease subunit OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) OX=158878 GN=hsdR PE=3 SV=1 Length=929 Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust. Identities = 43/188 (23%), Positives = 75/188 (40%), Gaps = 24/188 (13%) Query 1 MELRSYQWEVIMPALE-----GKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVN 55 M +R YQ + ++ G N +W TG+GKT + ++ + D KV+ LV+ Sbjct 239 MAMRPYQVYAVEALIQQATETGNNGYVWHTTGSGKTLTSFKASQILSQQDDIKKVIFLVD 298 Query 56 RVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE 115 R L +Q EEF + G T + + + L L++ T + + A+ Sbjct 299 RKDLDSQTEEEFNKFAKGAVDKTFNTSQLVRQLNDKSLP----LIVTTIQKMAKAIQGNA 354 Query 116 ---EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGT 172 E+ VF ++DECH + ++ ++ + Q G T +P Sbjct 355 HLLEQYKTNKVVF---IIDECHRSQFGDMHRLVKQHFKN---------AQYFGFTGTPRF 402 Query 173 GGASKLDG 180 S DG Sbjct 403 PENSSQDG 410 >sp|A5UNK6|UVRB_METS3 UvrABC system protein B OS=Methanobrevibacter smithii (strain ATCC 35061 / DSM 861 / OCM 144 / PS) OX=420247 GN=uvrB PE=3 SV=1 Length=655 Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust. Identities = 27/108 (25%), Positives = 52/108 (48%), Gaps = 7/108 (6%) Query 370 GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD 429 G + R ++ L+ L ++ D A+ IG + + ++ +++ + Sbjct 434 GEVKKRAKKDERVLVTTLTKKMAEDLTDYYAK--IGVKVRYMHSEIDTLERIDIVDDLRR 491 Query 430 GTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 GT ++LV ++ EGLD+P ++V + G L NE S++Q GRA Sbjct 492 GTFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNETSLIQTIGRA 539 >sp|Q5QMN3|RH20_ORYSJ DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0197200 PE=3 SV=2 Length=494 Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/84 (30%), Positives = 42/84 (50%), Gaps = 4/84 (5%) Query 416 TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY---GLLTNEISMVQARGRA 472 +Q ++ V+ +F+ G ++ AT VA GLD+ V+ Y G L + + + GRA Sbjct 371 SQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRA 430 Query 473 RADQSVYAFVATEGSRELKRELIN 496 A + Y F +R ++LIN Sbjct 431 GAKGTAYTFFTAANAR-FAKDLIN 453 >sp|A4RGD1|RRP3_PYRO7 ATP-dependent rRNA helicase RRP3 OS=Pyricularia oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 GN=RRP3 PE=3 SV=1 Length=538 Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 23/116 (20%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA----GNSSQSTHMTQRDQQEVIQK 426 I+FTRT A + + L+ L GA G SQS + + K Sbjct 354 IVFTRTVNEAQRVSILLRT------------LSFGAIPLHGQLSQSMRLG------ALNK 395 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF 481 F+ + ++LVAT VA GLDIP ++V+ + + + ++ + GR ARA +S A Sbjct 396 FKARSRDILVATDVAARGLDIPEVDLVINFDMPQDSMTYIHRVGRTARAGRSGRAI 451 >sp|Q6C4D4|DBP2_YARLI ATP-dependent RNA helicase DBP2 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DBP2 PE=3 SV=1 Length=552 Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust. Identities = 33/130 (25%), Positives = 61/130 (47%), Gaps = 22/130 (17%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE--VIQKFQ 428 +IFT T++ A + +L+Q G + + H ++ Q+ V+ +F+ Sbjct 367 LIFTGTKRVADDITKFLRQD----------------GWPALAIHGDKQQQERDWVLNEFR 410 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE---ISMVQARGRARADQSVYAFVATE 485 G ++VAT VA G+D+ N V+ Y +N + + GRA + Y + TE Sbjct 411 QGKSPIMVATDVASRGIDVKGINFVINYDYPSNSEDYVHRIGRTGRAGTKGTAYTYF-TE 469 Query 486 GSRELKRELI 495 +R+ R+L+ Sbjct 470 DNRKQARDLL 479 >sp|Q5HIH2|MFD_STAAC Transcription-repair-coupling factor OS=Staphylococcus aureus (strain COL) OX=93062 GN=mfd PE=3 SV=1 Length=1168 Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 42/74 (57%), Gaps = 10/74 (14%) Query 414 HMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQA 468 MT+RD +E + F + ++LV T++ E G+D+P+ N ++ R+GL + Q Sbjct 862 QMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIEDADRFGLS----QLYQL 917 Query 469 RGR-ARADQSVYAF 481 RGR R+ + YA+ Sbjct 918 RGRVGRSSRIGYAY 931 >sp|Q8NXZ6|MFD_STAAW Transcription-repair-coupling factor OS=Staphylococcus aureus (strain MW2) OX=196620 GN=mfd PE=3 SV=1 Length=1168 Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 42/74 (57%), Gaps = 10/74 (14%) Query 414 HMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQA 468 MT+RD +E + F + ++LV T++ E G+D+P+ N ++ R+GL + Q Sbjct 862 QMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIEDADRFGLS----QLYQL 917 Query 469 RGR-ARADQSVYAF 481 RGR R+ + YA+ Sbjct 918 RGRVGRSSRIGYAY 931 >sp|Q6GBY5|MFD_STAAS Transcription-repair-coupling factor OS=Staphylococcus aureus (strain MSSA476) OX=282459 GN=mfd PE=3 SV=1 Length=1168 Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 42/74 (57%), Gaps = 10/74 (14%) Query 414 HMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQA 468 MT+RD +E + F + ++LV T++ E G+D+P+ N ++ R+GL + Q Sbjct 862 QMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIEDADRFGLS----QLYQL 917 Query 469 RGR-ARADQSVYAF 481 RGR R+ + YA+ Sbjct 918 RGRVGRSSRIGYAY 931 >sp|Q2G0R8|MFD_STAA8 Transcription-repair-coupling factor OS=Staphylococcus aureus (strain NCTC 8325 / PS 47) OX=93061 GN=mfd PE=3 SV=1 Length=1168 Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 42/74 (57%), Gaps = 10/74 (14%) Query 414 HMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQA 468 MT+RD +E + F + ++LV T++ E G+D+P+ N ++ R+GL + Q Sbjct 862 QMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIEDADRFGLS----QLYQL 917 Query 469 RGR-ARADQSVYAF 481 RGR R+ + YA+ Sbjct 918 RGRVGRSSRIGYAY 931 >sp|Q2FJD8|MFD_STAA3 Transcription-repair-coupling factor OS=Staphylococcus aureus (strain USA300) OX=367830 GN=mfd PE=3 SV=1 Length=1168 Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 42/74 (57%), Gaps = 10/74 (14%) Query 414 HMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQA 468 MT+RD +E + F + ++LV T++ E G+D+P+ N ++ R+GL + Q Sbjct 862 QMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIEDADRFGLS----QLYQL 917 Query 469 RGR-ARADQSVYAF 481 RGR R+ + YA+ Sbjct 918 RGRVGRSSRIGYAY 931 >sp|Q6GJG8|MFD_STAAR Transcription-repair-coupling factor OS=Staphylococcus aureus (strain MRSA252) OX=282458 GN=mfd PE=3 SV=1 Length=1168 Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 42/74 (57%), Gaps = 10/74 (14%) Query 414 HMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQA 468 MT+RD +E + F + ++LV T++ E G+D+P+ N ++ R+GL + Q Sbjct 862 QMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIEDADRFGLS----QLYQL 917 Query 469 RGR-ARADQSVYAF 481 RGR R+ + YA+ Sbjct 918 RGRVGRSSRIGYAY 931 >sp|Q7A7B2|MFD_STAAN Transcription-repair-coupling factor OS=Staphylococcus aureus (strain N315) OX=158879 GN=mfd PE=1 SV=1 Length=1168 Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 42/74 (57%), Gaps = 10/74 (14%) Query 414 HMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQA 468 MT+RD +E + F + ++LV T++ E G+D+P+ N ++ R+GL + Q Sbjct 862 QMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIEDADRFGLS----QLYQL 917 Query 469 RGR-ARADQSVYAF 481 RGR R+ + YA+ Sbjct 918 RGRVGRSSRIGYAY 931 >sp|Q99WA0|MFD_STAAM Transcription-repair-coupling factor OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) OX=158878 GN=mfd PE=3 SV=1 Length=1168 Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 42/74 (57%), Gaps = 10/74 (14%) Query 414 HMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQA 468 MT+RD +E + F + ++LV T++ E G+D+P+ N ++ R+GL + Q Sbjct 862 QMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIEDADRFGLS----QLYQL 917 Query 469 RGR-ARADQSVYAF 481 RGR R+ + YA+ Sbjct 918 RGRVGRSSRIGYAY 931 >sp|Q8NYL9|HSDR_STAAW Type I restriction enzyme SauMW2ORF169P endonuclease subunit OS=Staphylococcus aureus (strain MW2) OX=196620 GN=hsdR PE=3 SV=1 Length=929 Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust. Identities = 43/188 (23%), Positives = 75/188 (40%), Gaps = 24/188 (13%) Query 1 MELRSYQWEVIMPALE-----GKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVN 55 M +R YQ + ++ G N +W TG+GKT + ++ + D KV+ LV+ Sbjct 239 MAMRPYQVYAVEALIQQATETGNNGYVWHTTGSGKTLTSFKASQILSQQDDIKKVIFLVD 298 Query 56 RVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE 115 R L +Q EEF + G T + + + L L++ T + + A+ Sbjct 299 RKDLDSQTEEEFNKFAKGAVDKTFNTSQLVRQLNDKSLP----LIVTTIQKMAKAIQGNA 354 Query 116 ---EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGT 172 E+ VF ++DECH + ++ ++ + Q G T +P Sbjct 355 HLLEQYKTNKVVF---IIDECHRSQFGDMHRLVKQHFKN---------AQYFGFTGTPRF 402 Query 173 GGASKLDG 180 S DG Sbjct 403 PENSSQDG 410 >sp|Q6GCT1|HSDR_STAAS Type I restriction enzyme SauMSSORF170P endonuclease subunit OS=Staphylococcus aureus (strain MSSA476) OX=282459 GN=hsdR PE=3 SV=1 Length=929 Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust. Identities = 43/188 (23%), Positives = 75/188 (40%), Gaps = 24/188 (13%) Query 1 MELRSYQWEVIMPALE-----GKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVN 55 M +R YQ + ++ G N +W TG+GKT + ++ + D KV+ LV+ Sbjct 239 MAMRPYQVYAVEALIQQATETGNNGYVWHTTGSGKTLTSFKASQILSQQDDIKKVIFLVD 298 Query 56 RVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE 115 R L +Q EEF + G T + + + L L++ T + + A+ Sbjct 299 RKDLDSQTEEEFNKFAKGAVDKTFNTSQLVRQLNDKSLP----LIVTTIQKMAKAIQGNA 354 Query 116 ---EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGT 172 E+ VF ++DECH + ++ ++ + Q G T +P Sbjct 355 HLLEQYKTNKVVF---IIDECHRSQFGDMHRLVKQHFKN---------AQYFGFTGTPRF 402 Query 173 GGASKLDG 180 S DG Sbjct 403 PENSSQDG 410 >sp|Q2YVY2|MFD_STAAB Transcription-repair-coupling factor OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) OX=273036 GN=mfd PE=3 SV=1 Length=1168 Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 42/74 (57%), Gaps = 10/74 (14%) Query 414 HMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQA 468 MT+RD +E + F + ++LV T++ E G+D+P+ N ++ R+GL + Q Sbjct 862 QMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIEDADRFGLS----QLYQL 917 Query 469 RGR-ARADQSVYAF 481 RGR R+ + YA+ Sbjct 918 RGRVGRSSRIGYAY 931 >sp|Q6GKB1|HSDR_STAAR Type I restriction enzyme SauMRSORF196P endonuclease subunit OS=Staphylococcus aureus (strain MRSA252) OX=282458 GN=hsdR PE=3 SV=1 Length=929 Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust. Identities = 43/188 (23%), Positives = 75/188 (40%), Gaps = 24/188 (13%) Query 1 MELRSYQWEVIMPALE-----GKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVN 55 M +R YQ + ++ G N +W TG+GKT + ++ + D KV+ LV+ Sbjct 239 MAMRPYQVYAVEALIQQATETGNNGYVWHTTGSGKTLTSFKASQILSQQDDIKKVIFLVD 298 Query 56 RVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE 115 R L +Q EEF + G T + + + L L++ T + + A+ Sbjct 299 RKDLDSQTEEEFNKFAKGAVDKTFNTSQLVRQLNDKSLP----LIVTTIQKMAKAIQGNA 354 Query 116 ---EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGT 172 E+ VF ++DECH + ++ ++ + Q G T +P Sbjct 355 HLLEQYKTNKVVF---IIDECHRSQFGDMHRLVKQHFKN---------AQYFGFTGTPRF 402 Query 173 GGASKLDG 180 S DG Sbjct 403 PENSSQDG 410 >sp|Q8Y8N0|CSHA_LISMO ATP-dependent RNA helicase CshA OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) OX=169963 GN=cshA PE=2 SV=1 Length=520 Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 62/127 (49%), Gaps = 22/127 (17%) Query 347 ENPKLEMLEKILQRQFSSSNSPR-GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 E K ++L ++L Q +P I+F RT++ L + +D+R + G Sbjct 224 EKEKFDVLSRLLDVQ-----APELAIVFGRTKRRVDELS---------RALDMRGYVAEG 269 Query 406 A-GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 G+ +Q+ M+ V++KF++G +++LVAT VA GLDI V Y + + S Sbjct 270 IHGDLTQAKRMS------VLRKFKEGKIDVLVATDVAARGLDISGVTHVYNYDIPQDPES 323 Query 465 MVQARGR 471 V GR Sbjct 324 YVHRIGR 330 >sp|P21693|DBPA_ECOLI ATP-dependent RNA helicase DbpA OS=Escherichia coli (strain K12) OX=83333 GN=dbpA PE=1 SV=2 Length=457 Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust. Identities = 33/84 (39%), Positives = 45/84 (54%), Gaps = 5/84 (6%) Query 407 GNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 G S+ S H + QRD+ + + +F +G+ +LVAT VA GLDI +VV + L + Sbjct 265 GQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEV 324 Query 465 MVQARGR-ARADQSVYA--FVATE 485 V GR ARA S A F A E Sbjct 325 HVHRIGRTARAGNSGLAISFCAPE 348 >sp|Q8K9H6|DEAD_BUCAP ATP-dependent RNA helicase DeaD OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) OX=198804 GN=deaD PE=3 SV=1 Length=601 Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust. Identities = 32/108 (30%), Positives = 59/108 (55%), Gaps = 5/108 (5%) Query 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 G +++ + M Q +++ +++ + G L++L+AT VA GLD+ + V+ Y + + S Sbjct 268 GYNSAALNGDMNQALREQTLERLKSGRLDILIATDVAARGLDVDRISFVINYDIPMDSES 327 Query 465 MVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQ 511 V GR RA ++ A + E +RE +R L N +E + Q + VQ Sbjct 328 YVHRIGRTGRAGRAGRALLFVE-NRE-RRLLRN--IERTINQTIPEVQ 371 >sp|Q6FQZ0|DBP8_CANGA ATP-dependent RNA helicase DBP8 OS=Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DBP8 PE=3 SV=1 Length=437 Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 65/130 (50%), Gaps = 17/130 (13%) Query 346 PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 PE+ K L ++L + S +NS IIF +A L ++ L+ +D+R Sbjct 242 PEHVKEAYLYQLLTCE-SYANST-AIIFVNRTTAAEVL------RRTLKALDVRV----- 288 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465 +S + M Q+++ + +F+ +L+AT VA GLDIP +V+ Y + ++ + Sbjct 289 ---ASLHSQMPQQERTNSMHRFRANAARVLIATDVASRGLDIPTVELVINYDIPSDPDTF 345 Query 466 VQARGR-ARA 474 + GR ARA Sbjct 346 IHRSGRTARA 355 >sp|Q6BGU8|DBP8_DEBHA ATP-dependent RNA helicase DBP8 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DBP8 PE=3 SV=2 Length=441 Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 55/115 (48%), Gaps = 18/115 (16%) Query 361 QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ 420 Q+S S S IIFT +A L ++ L+ ++ R +S + M Q ++ Sbjct 250 QYSDSLS---IIFTNRTATAELL------RRTLRKLEFRV--------ASLHSEMPQTER 292 Query 421 QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA 474 + +F+ G +L+AT VA GLDIP +VV Y + + + GR ARA Sbjct 293 TNSLHRFKAGAAKILIATDVASRGLDIPTVELVVNYDIPADADDFIHRVGRTARA 347 >sp|Q73EU1|CSHA_BACC1 DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus cereus (strain ATCC 10987 / NRS 248) OX=222523 GN=cshA PE=3 SV=1 Length=525 Score = 43.9 bits (102), Expect = 0.005, Method: Compositional matrix adjust. Identities = 45/151 (30%), Positives = 71/151 (47%), Gaps = 27/151 (18%) Query 347 ENPKLEMLEKILQRQFSSSNSPR-GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 E K ++L ++L Q SP I+F RT++ VD ++ L Sbjct 224 EKKKFDVLTRLLDIQ-----SPELAIVFGRTKRR----------------VDELSEALNL 262 Query 406 AGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI 463 G +++ H +TQ + V++KF++G++ +LVAT VA GLDI V + + + Sbjct 263 RGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPE 322 Query 464 SMVQARGR-ARADQSVYA--FVATEGSRELK 491 S V GR RA + A FV S +LK Sbjct 323 SYVHRIGRTGRAGKKGIAMLFVTPRESGQLK 353 >sp|C5CFR8|UVRB_KOSOT UvrABC system protein B OS=Kosmotoga olearia (strain ATCC BAA-1733 / DSM 21960 / TBF 19.5.1) OX=521045 GN=uvrB PE=3 SV=1 Length=667 Score = 43.9 bits (102), Expect = 0.005, Method: Compositional matrix adjust. Identities = 29/127 (23%), Positives = 67/127 (53%), Gaps = 25/127 (20%) Query 351 LEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSS 410 +E ++K+++R R ++ T+++A +L + + IRA+ L Sbjct 433 IEEVQKVIER------GERALVTVLTKKAAEMFSAYLNE------LGIRAEYL------- 473 Query 411 QSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISM 465 + + ++ EV++K ++G+++++V ++ EGLD+P ++V + G L +E ++ Sbjct 474 -HSELDTVERVEVLKKLREGSVDVVVGVNLLREGLDLPEVSLVAIMDADKEGFLRSETTL 532 Query 466 VQARGRA 472 +Q GRA Sbjct 533 IQTIGRA 539 >sp|Q4P184|FAL1_USTMA ATP-dependent RNA helicase FAL1 OS=Ustilago maydis (strain 521 / FGSC 9021) OX=237631 GN=FAL1 PE=3 SV=1 Length=397 Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust. Identities = 21/64 (33%), Positives = 38/64 (59%), Gaps = 0/64 (0%) Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 SS M Q+++ EV+ +F+ G+ +L+ T V G+DI + ++V+ Y L TN + + Sbjct 291 SSMHGEMQQKERDEVMAEFRQGSSRVLITTDVWARGIDIANISLVINYDLPTNRENYIHR 350 Query 469 RGRA 472 GR+ Sbjct 351 IGRS 354 >sp|Q4PEX7|DBP8_USTMA ATP-dependent RNA helicase DBP8 OS=Ustilago maydis (strain 521 / FGSC 9021) OX=237631 GN=DBP8 PE=3 SV=2 Length=531 Score = 43.9 bits (102), Expect = 0.005, Method: Compositional matrix adjust. Identities = 48/187 (26%), Positives = 78/187 (42%), Gaps = 32/187 (17%) Query 368 PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF 427 P IIFT ++A +L L + +G N S +H+ Q ++ E +Q F Sbjct 341 PATIIFTARCKTAATLSGMLAE--------------LGIPNVSLHSHLRQSERSENLQTF 386 Query 428 QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFVATEGS 487 + + +L+AT V GLDIP +V+ + L + V GR A G Sbjct 387 RAQRVPVLIATDVGSRGLDIPDVELVINWDLPSAWQDYVHRVGR----------TARNGK 436 Query 488 RELKRELINE----ALETLMEQAVAAVQKMDQAEYQAKI-RDLQQAALTKRAAQAAQREN 542 R I E + ++ ++ + +++ E + KI L A KR A A ++ Sbjct 437 RGFAISFITERDIDVIHSIEDKINTKLTQLEGLEDEDKILEKLNAVATAKRVATMALHDS 496 Query 543 Q---RQQ 546 Q RQQ Sbjct 497 QFGERQQ 503 >sp|O62591|IF4A_LEIMA Probable eukaryotic initiation factor 4A OS=Leishmania major OX=5664 GN=LmjF.01.0770 PE=3 SV=1 Length=403 Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 0/54 (0%) Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE 462 SS M + D++ V+ F+ G+ +LV T + G+D+ H N+V+ + L TN+ Sbjct 295 SSMHAEMPKSDRERVMNTFRSGSSRVLVTTDLVARGIDVHHVNIVINFDLPTNK 348 >sp|A4HRK0|IF4A_LEIIN Probable eukaryotic initiation factor 4A OS=Leishmania infantum OX=5671 GN=LinJ01.0780 PE=3 SV=1 Length=403 Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 0/54 (0%) Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE 462 SS M + D++ V+ F+ G+ +LV T + G+D+ H N+V+ + L TN+ Sbjct 295 SSMHAEMPKSDRERVMNTFRSGSSRVLVTTDLVARGIDVHHVNIVINFDLPTNK 348 >sp|A7TK63|DBP8_VANPO ATP-dependent RNA helicase DBP8 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 GN=DBP8 PE=3 SV=1 Length=431 Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust. Identities = 31/101 (31%), Positives = 53/101 (52%), Gaps = 7/101 (7%) Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 +S + M Q ++ +Q+F+ +L+AT VA GLDIP +V+ Y + + + + Sbjct 282 ASLHSQMPQSERINSLQRFRANAARVLIATDVAARGLDIPTVELVINYDIPQDPDTFIHR 341 Query 469 RGR-ARADQS--VYAFVATEGSRELKR-ELINEALETLMEQ 505 GR ARA +S +FV R++ R E I E + M++ Sbjct 342 SGRTARAGRSGDAISFVT---PRDVSRIEAIEERINKKMDE 379 >sp|P0DMI1|HELS_ARCFU ATP-dependent DNA helicase Hel308 OS=Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16) OX=224325 GN=hel308 PE=1 SV=1 Length=691 Score = 43.9 bits (102), Expect = 0.005, Method: Compositional matrix adjust. Identities = 45/168 (27%), Positives = 74/168 (44%), Gaps = 11/168 (7%) Query 2 ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVT 61 EL Q E + GKN+++ +PT AGKT A R E + G K + +V L Sbjct 25 ELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVR--EAIKGGKSLYVVPLRALAG 82 Query 62 QHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVE 121 + E F++ + +GD R HL C D+++ T+E + + Sbjct 83 EKYESFKKWEKIGLRIGISTGDYESRD--EHLGDC-DIIVTTSEKADSLIRN----RASW 135 Query 122 LTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS 169 + S +VVDE H D+ + L K++R +V+GL+A+ Sbjct 136 IKAVSCLVVDEIHLL--DSEKRGATLEILVTKMRRMNKALRVIGLSAT 181 >sp|Q25225|IF4A_LEIBR Probable eukaryotic initiation factor 4A OS=Leishmania braziliensis OX=5660 GN=LbrM01_V2.0740 PE=3 SV=2 Length=403 Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 0/54 (0%) Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE 462 SS M + D++ V+ F+ G+ +LV T + G+D+ H N+V+ + L TN+ Sbjct 295 SSMHAEMPKSDRERVMNTFRSGSSRVLVTTDLVARGIDVHHVNIVINFDLPTNK 348 >sp|P0CQ74|DED1_CRYNJ ATP-dependent RNA helicase ded1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=DED1 PE=3 SV=1 Length=637 Score = 43.9 bits (102), Expect = 0.005, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 63/124 (51%), Gaps = 11/124 (9%) Query 378 QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLL 435 QS +L++++ ++ D L +++ S H TQR+++ + F+ G +L Sbjct 420 QSGGLILVFVETKR---MADTLCDFLCSRRHNATSIHGDRTQREREAALYAFKSGRAPIL 476 Query 436 VATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR----GRARADQSVYAFVATEGSRELK 491 VAT+VA GLDIP+ V+ Y L N+++ R GRA + AF G+ + Sbjct 477 VATAVAARGLDIPNVTHVILYD-LPNDVAEYTHRIGRTGRAGNVGTSTAFF-NRGNTNIG 534 Query 492 RELI 495 ++LI Sbjct 535 KDLI 538 >sp|P0CQ75|DED1_CRYNB ATP-dependent RNA helicase ded1 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=DED1 PE=3 SV=1 Length=637 Score = 43.9 bits (102), Expect = 0.005, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 63/124 (51%), Gaps = 11/124 (9%) Query 378 QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLL 435 QS +L++++ ++ D L +++ S H TQR+++ + F+ G +L Sbjct 420 QSGGLILVFVETKR---MADTLCDFLCSRRHNATSIHGDRTQREREAALYAFKSGRAPIL 476 Query 436 VATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR----GRARADQSVYAFVATEGSRELK 491 VAT+VA GLDIP+ V+ Y L N+++ R GRA + AF G+ + Sbjct 477 VATAVAARGLDIPNVTHVILYD-LPNDVAEYTHRIGRTGRAGNVGTSTAFF-NRGNTNIG 534 Query 492 RELI 495 ++LI Sbjct 535 KDLI 538 >sp|Q47281|T1RE_ECOLX Type I restriction enzyme EcoEI endonuclease subunit OS=Escherichia coli OX=562 GN=hsdR PE=3 SV=1 Length=813 Score = 43.9 bits (102), Expect = 0.005, Method: Compositional matrix adjust. Identities = 51/179 (28%), Positives = 78/179 (44%), Gaps = 36/179 (20%) Query 4 RSYQWEVIMPALE----GKN-IIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVH 58 R YQ + I ++ GKN I++ + TG GKT A + R + + +++ L +R Sbjct 169 RYYQMQAINRTVDAVSAGKNRILLVMATGTGKTYTAFQIIWRLWKAKNKKRILFLADRNI 228 Query 59 LVTQHG-EEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE 117 LV Q +F+ + VT + D HLA L A+T PEE Sbjct 229 LVDQTKRNDFQPFGNAMTKVTGRTIDPAYEV---HLA------------LYQAITGPEEH 273 Query 118 E----HVELTVFSLIVVDECHH--THKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASP 170 + V F LIV+DECH +D+ + I+ +Y Q +GLTA+P Sbjct 274 QKAYKQVAPDFFDLIVIDECHRGSASEDSAWREIL-EYFGSATQ--------VGLTATP 323 >sp|Q9Z6C9|CSHA_LIMRT ATP-dependent RNA helicase CshA OS=Limosilactobacillus reuteri OX=1598 GN=cshA PE=3 SV=1 Length=497 Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 2/79 (3%) Query 396 VDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV 453 VD ++ LI G ++ H +TQ + +++ KF++ L++LVAT VA GLDI V Sbjct 252 VDELSKGLIARGYNAAGIHGDLTQDKRSKIMWKFKNNELDILVATDVAARGLDISGVTHV 311 Query 454 VRYGLLTNEISMVQARGRA 472 Y + ++ S V GR Sbjct 312 YNYDIPSDPDSYVHRIGRT 330 >sp|Q9M2F9|RH52_ARATH DEAD-box ATP-dependent RNA helicase 52 OS=Arabidopsis thaliana OX=3702 GN=RH52 PE=1 SV=1 Length=646 Score = 43.9 bits (102), Expect = 0.005, Method: Compositional matrix adjust. Identities = 33/111 (30%), Positives = 51/111 (46%), Gaps = 15/111 (14%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 ++F T++ A SL WL + G ++ +Q++++ ++ F+ G Sbjct 409 LVFVETKKGADSLENWL--------------CINGFPATTIHGDRSQQEREVALRSFKTG 454 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYA 480 +LVAT VA GLDIPH VV + L + V GR RA S A Sbjct 455 RTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNSGLA 505 >sp|Q2H720|DBP2_CHAGB ATP-dependent RNA helicase DBP2 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=DBP2 PE=3 SV=1 Length=562 Score = 43.9 bits (102), Expect = 0.005, Method: Compositional matrix adjust. Identities = 41/148 (28%), Positives = 74/148 (50%), Gaps = 21/148 (14%) Query 351 LEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSS 410 ++ LEKI++ + S + + +IFT T++ A + +L+Q G + I G+ Sbjct 372 IKHLEKIMEDKESQN---KILIFTGTKRVADEITRFLRQD-GWPALSIH-------GDKQ 420 Query 411 QSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE---ISMVQ 467 Q+ +RD V+ +F+ G ++VAT VA G+D+ + V+ Y N I + Sbjct 421 QN----ERDW--VLDQFKTGKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIG 474 Query 468 ARGRARADQSVYAFVATEGSRELKRELI 495 GRA A + F T+ S++ R+L+ Sbjct 475 RTGRAGAKGTAITFFTTDNSKQ-ARDLV 501 >sp|Q5HGK6|RECG_STAAC ATP-dependent DNA helicase RecG OS=Staphylococcus aureus (strain COL) OX=93062 GN=recG PE=3 SV=1 Length=686 Score = 43.9 bits (102), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 44/71 (62%), Gaps = 10/71 (14%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQAR 469 ++ ++ EV+QKF + +N+LV+T+V E G+++P+ ++ R+GL T + Q R Sbjct 518 LSADEKDEVMQKFSNHEINVLVSTTVVEVGVNVPNATFMMIYDADRFGLST----LHQLR 573 Query 470 GR-ARADQSVY 479 GR R+DQ Y Sbjct 574 GRVGRSDQQSY 584 >sp|O50581|RECG_STAA8 ATP-dependent DNA helicase RecG OS=Staphylococcus aureus (strain NCTC 8325 / PS 47) OX=93061 GN=recG PE=3 SV=1 Length=686 Score = 43.9 bits (102), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 44/71 (62%), Gaps = 10/71 (14%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQAR 469 ++ ++ EV+QKF + +N+LV+T+V E G+++P+ ++ R+GL T + Q R Sbjct 518 LSADEKDEVMQKFSNHEINVLVSTTVVEVGVNVPNATFMMIYDADRFGLST----LHQLR 573 Query 470 GR-ARADQSVY 479 GR R+DQ Y Sbjct 574 GRVGRSDQQSY 584 >sp|Q6CIV2|DBP2_KLULA ATP-dependent RNA helicase DBP2 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=DBP2 PE=3 SV=1 Length=554 Score = 43.9 bits (102), Expect = 0.005, Method: Compositional matrix adjust. Identities = 30/108 (28%), Positives = 57/108 (53%), Gaps = 11/108 (10%) Query 417 QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY---GLLTNEISMVQARGRAR 473 Q ++ V+ +F+ G ++VAT VA G+D+ N V+ Y G + + + + GRA Sbjct 396 QNERDWVLAEFRSGRSPIMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAG 455 Query 474 ADQSVYAFVATEGSRELKRELIN---EALETLMEQAVAAVQKMDQAEY 518 + + +F TEG++ L LI EA + + E+ +++ D+ +Y Sbjct 456 STGTAISFF-TEGNKSLGAALIKIMREAKQDIPEE----LRRYDRGQY 498 >sp|P42305|DBPA_BACSU ATP-dependent RNA helicase DbpA OS=Bacillus subtilis (strain 168) OX=224308 GN=dbpA PE=1 SV=2 Length=479 Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust. Identities = 36/135 (27%), Positives = 56/135 (41%), Gaps = 18/135 (13%) Query 338 LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD 397 + H E K +L+ +L + N IIF RT++ + L L Sbjct 215 IEHAVIQVREENKFSLLKDVLM----TENPDSCIIFCRTKEHVNQLTDELDD-------- 262 Query 398 IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG 457 +G M Q D+ +V+ +F+ G LVAT VA G+DI + ++V+ Y Sbjct 263 ------LGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYD 316 Query 458 LLTNEISMVQARGRA 472 L + S V GR Sbjct 317 LPLEKESYVHRTGRT 331 >sp|Q9ZB21|UVRB_MYCPL UvrABC system protein B OS=Mycoplasmopsis pulmonis OX=2107 GN=uvrB PE=3 SV=1 Length=660 Score = 43.9 bits (102), Expect = 0.005, Method: Compositional matrix adjust. Identities = 35/137 (26%), Positives = 69/137 (50%), Gaps = 21/137 (15%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 R +I T T+++A L L+LQ+++ +++ I + I N E+++ + Sbjct 448 RTLILTTTKKNAEELSLFLQEKK-IKSAYIHDRFKIFERN-------------EILKGLR 493 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGR-ARADQSVYAFV 482 G +++V ++ +EG+D+P +++ GL+ + S++Q GR AR D F Sbjct 494 MGKFDVVVGINLLKEGIDLPEVSLICVLNADSTGLMRDTRSLIQIVGRAARNDHGKVIFY 553 Query 483 ATEGSRELKRELINEAL 499 A E + + RE I + L Sbjct 554 ANEITSSM-RECIEDNL 569 >sp|B3PLX9|UVRB_META1 UvrABC system protein B OS=Metamycoplasma arthritidis (strain 158L3-1) OX=243272 GN=uvrB PE=3 SV=1 Length=660 Score = 43.9 bits (102), Expect = 0.005, Method: Compositional matrix adjust. Identities = 35/137 (26%), Positives = 69/137 (50%), Gaps = 21/137 (15%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 R +I T T+++A L L+LQ+++ +++ I + I N E+++ + Sbjct 448 RTLILTTTKKNAEELSLFLQEKK-IKSAYIHDRFKIFERN-------------EILKGLR 493 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGR-ARADQSVYAFV 482 G +++V ++ +EG+D+P +++ GL+ + S++Q GR AR D F Sbjct 494 MGKFDVVVGINLLKEGIDLPEVSLICVLNADSTGLMRDTRSLIQIVGRAARNDHGKVIFY 553 Query 483 ATEGSRELKRELINEAL 499 A E + + RE I + L Sbjct 554 ANEITSSM-RECIEDNL 569 >sp|Q6BTL5|DRS1_DEBHA ATP-dependent RNA helicase DRS1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DRS1 PE=3 SV=1 Length=771 Score = 43.9 bits (102), Expect = 0.005, Method: Compositional matrix adjust. Identities = 38/151 (25%), Positives = 68/151 (45%), Gaps = 20/151 (13%) Query 358 LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ 417 L + S R ++F ++SAH L + L L+G S +TQ Sbjct 498 LIKSVDPSQQNRIVVFVARKESAHKLRIILG--------------LLGMRVSELHGSLTQ 543 Query 418 RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL-LTNEISM--VQARGRARA 474 + + F++ T+ +L+ T +A GLDIP +V+ Y + T+EI + V RA Sbjct 544 EQRLASVNDFKNLTVPVLICTDLAARGLDIPKIEIVINYDMPKTHEIYLHRVGRTARAGR 603 Query 475 DQSVYAFVATEGSRELKRELINEALETLMEQ 505 + FV G R ++ +A++++ E+ Sbjct 604 EGKSITFV---GESTQDRAIVKDAIKSISEE 631 >sp|Q5RF43|DDX3Y_PONAB ATP-dependent RNA helicase DDX3Y OS=Pongo abelii OX=9601 GN=DDX3Y PE=2 SV=1 Length=658 Score = 43.9 bits (102), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 50/90 (56%), Gaps = 5/90 (6%) Query 384 LLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVA 441 L++++ ++G +++ L G + S H +QRD++E + +F+ G +LVAT+VA Sbjct 443 LVFVETKKGADSLE---DFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVA 499 Query 442 EEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 GLDI + V+ + L ++ V GR Sbjct 500 ARGLDISNVRHVINFDLPSDIEEYVHRIGR 529 >sp|Q12WZ6|HELS_METBU ATP-dependent DNA helicase Hel308 OS=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) OX=259564 GN=hel308 PE=3 SV=1 Length=760 Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust. Identities = 48/178 (27%), Positives = 81/178 (46%), Gaps = 26/178 (15%) Query 2 ELRSYQWEVI-MPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV 60 EL Q E I M LE KN++ +PT +GKT A + + +G K + +V L Sbjct 23 ELYPPQAEAIEMGLLEKKNLLAAIPTASGKTLLAELAMIKAIR--EGGKALYIVPLRALA 80 Query 61 TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAE----LLQMALTSPEE 116 ++ E F+ + V +GD+ RA + +D+++ T+E LL+ + +E Sbjct 81 SEKFERFKELAPFGIKVGISTGDLDSRADW---LGVNDIIVATSEKTDSLLRNGTSWMDE 137 Query 117 EEHVELTVFSLIVVDECH---HTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPG 171 + +VVDE H ++ V ++ KL R P QV+ L+A+ G Sbjct 138 --------ITTVVVDEIHLLDSKNRGPTLEVTIT-----KLMRLNPDVQVVALSATVG 182 >sp|O00571|DDX3X_HUMAN ATP-dependent RNA helicase DDX3X OS=Homo sapiens OX=9606 GN=DDX3X PE=1 SV=3 Length=662 Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 50/90 (56%), Gaps = 5/90 (6%) Query 384 LLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVA 441 L++++ ++G +++ L G + S H +QRD++E + +F+ G +LVAT+VA Sbjct 445 LVFVETKKGADSLE---DFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVA 501 Query 442 EEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 GLDI + V+ + L ++ V GR Sbjct 502 ARGLDISNVKHVINFDLPSDIEEYVHRIGR 531 >sp|Q62167|DDX3X_MOUSE ATP-dependent RNA helicase DDX3X OS=Mus musculus OX=10090 GN=Ddx3x PE=1 SV=3 Length=662 Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust. Identities = 34/128 (27%), Positives = 60/128 (47%), Gaps = 20/128 (16%) Query 350 KLEMLEKILQRQF------SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLL 403 K+ +E+I +R F ++ ++F T++ A SL +L + Sbjct 418 KVVWVEEIDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE------------- 464 Query 404 IGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI 463 G +S +QRD++E + +F+ G +LVAT+VA GLDI + V+ + L ++ Sbjct 465 -GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIE 523 Query 464 SMVQARGR 471 V GR Sbjct 524 EYVHRIGR 531 >sp|Q8PZR7|HELS_METMA ATP-dependent DNA helicase Hel308 OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) OX=192952 GN=hel308 PE=3 SV=1 Length=730 Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust. Identities = 52/181 (29%), Positives = 84/181 (46%), Gaps = 30/181 (17%) Query 1 MELRSYQWEVIMPAL-EGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHL 59 +EL Q E + L EGKN++ +PT +GKT A + + ++G K + +V L Sbjct 22 LELYPPQAEAVEKGLLEGKNLLAAIPTASGKTLLAELAMLKSV--LNGGKALYIVPLRAL 79 Query 60 VTQHGEEFRR-----MLDGRWTVTTLSGDMGPR-AGFGHLARCHDLLICTAELLQMALTS 113 + E+FRR +L R ++T GD R G G +D+++ T+E L + Sbjct 80 AS---EKFRRFQEFSVLGMRVGIST--GDYDRRDEGLG----INDIIVATSEKTDSLLRN 130 Query 114 PEEEEHVELTVFSLIVVDECH---HTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASP 170 E + S++V DE H + + +S KL+R P QVL L+A+ Sbjct 131 ----ETAWMQEISVVVADEVHLIDSPDRGPTLEITLS-----KLRRMNPSCQVLALSATV 181 Query 171 G 171 G Sbjct 182 G 182 >sp|O15523|DDX3Y_HUMAN ATP-dependent RNA helicase DDX3Y OS=Homo sapiens OX=9606 GN=DDX3Y PE=1 SV=2 Length=660 Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 50/90 (56%), Gaps = 5/90 (6%) Query 384 LLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVA 441 L++++ ++G +++ L G + S H +QRD++E + +F+ G +LVAT+VA Sbjct 443 LVFVETKKGADSLE---DFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVA 499 Query 442 EEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 GLDI + V+ + L ++ V GR Sbjct 500 ARGLDISNVRHVINFDLPSDIEEYVHRIGR 529 >sp|Q5HRQ2|MFD_STAEQ Transcription-repair-coupling factor OS=Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A) OX=176279 GN=mfd PE=3 SV=1 Length=1169 Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 61/118 (52%), Gaps = 17/118 (14%) Query 414 HMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQA 468 MT+RD +E + F + ++LV T++ E G+D+P+ N ++ R+GL + Q Sbjct 863 QMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIEEADRFGLS----QLYQL 918 Query 469 RGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDL 525 RGR R+ + YA+ ++ ++NE E + QA+ ++ ++ +RDL Sbjct 919 RGRVGRSSRIGYAYFLHPANK-----VLNETAEERL-QAIKEFTELGSG-FKIAMRDL 969 >sp|Q8TL39|HELS_METAC ATP-dependent DNA helicase Hel308 OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) OX=188937 GN=hel308 PE=3 SV=1 Length=730 Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust. Identities = 51/210 (24%), Positives = 89/210 (42%), Gaps = 25/210 (12%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGR 74 LEGKN++ +PT +GKT A + + + G K + +V L ++ F+ + Sbjct 37 LEGKNLLAAIPTASGKTLLAELAMLKSV--LAGGKALYIVPLRALASEKFRRFQDFSELG 94 Query 75 WTVTTLSGDMGPR-AGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC 133 V +GD R G G +D+++ T+E L + E + S++VVDE Sbjct 95 IRVGISTGDYDRRDEGLG----INDIIVATSEKTDSLLRN----ETAWMQEISVVVVDEV 146 Query 134 H---HTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLC- 189 H + V ++ KL++ P Q+L L+A+ G A +L ++ L L Sbjct 147 HLIDSADRGPTLEVTLA-----KLRKMNPFCQILALSAT--VGNADELAAWLDAELVLSE 199 Query 190 ---ANLDTWCIMSPQNCCPQLQEHSQQPCK 216 +L C ++ +QP K Sbjct 200 WRPTDLMEGVFFDGTFFCKDKEKLIEQPTK 229 >sp|Q9K6X9|UVRB_HALH5 UvrABC system protein B OS=Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) OX=272558 GN=uvrB PE=3 SV=1 Length=660 Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 62/123 (50%), Gaps = 19/123 (15%) Query 365 SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI 424 + + R ++ T T++ A L +L++ V I+ + L + + ++ E+I Sbjct 443 AKNERVLVTTLTKKMAEDLTDYLKE------VGIKVRYL--------HSEVKTLERIEII 488 Query 425 QKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRARADQSVY 479 ++ + GT N+LV ++ EGLDIP ++V + G L E S++Q GRA + + Y Sbjct 489 RQLRLGTFNVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAARNANGY 548 Query 480 AFV 482 + Sbjct 549 VIM 551 >sp|Q8Y7M8|DBPA_LISMO ATP-dependent RNA helicase DbpA OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) OX=169963 GN=dbpA PE=2 SV=1 Length=470 Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust. Identities = 39/154 (25%), Positives = 64/154 (42%), Gaps = 22/154 (14%) Query 355 EKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH 414 EK L+ + N IIF T+ L L D++A + G Sbjct 221 EKTLKDVLITENPDSAIIFCNTKNQVDELTDLL---------DVKASKIHGG-------- 263 Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGR 471 + Q D+ + F+ G L+AT VA G+D+ + ++V+ Y L N + + GR Sbjct 264 LRQEDRFRAMDDFKSGKSRFLIATDVAGRGIDVDNVSLVINYDLPIEKENYVHRIGRTGR 323 Query 472 ARADQSVYAFVATEGSRELKRELINEALETLMEQ 505 A +FV T + L+ I E L+ +E+ Sbjct 324 AGKSGKAISFVKTNENPLLRD--IEEMLDVTIEK 355 >sp|P54509|YQHH_BACSU Uncharacterized ATP-dependent helicase YqhH OS=Bacillus subtilis (strain 168) OX=224308 GN=yqhH PE=3 SV=1 Length=557 Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust. Identities = 27/101 (27%), Positives = 46/101 (46%), Gaps = 15/101 (15%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 IIFT R + L W QQ G+ +V R +R +++ ++ G Sbjct 376 IIFTEYR-ATQIYLQWFLQQNGISSVPFRGGF--------------KRGKKDWMKDLFRG 420 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 + +L+AT EG+++ CN ++ Y L N + + Q GR Sbjct 421 KIQVLIATEAGGEGINLQFCNHMINYDLPWNPMRLEQRIGR 461 >sp|Q8TFK8|DED1_CANGA ATP-dependent RNA helicase DED1 OS=Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DED1 PE=3 SV=1 Length=617 Score = 43.5 bits (101), Expect = 0.007, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 14/110 (13%) Query 362 FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ 421 ++SN +IF T++ A L +L Q + A + G +Q +++ Sbjct 397 LAASNDNLTLIFVETKRMADQLTDFLIMQ------NFSATAIHG--------DRSQAERE 442 Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 + F+ G N+LVAT+VA GLDIP+ V+ Y L ++ V GR Sbjct 443 RALAAFRSGRANILVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGR 492 >sp|Q6GVM6|DDX3Y_PANTR ATP-dependent RNA helicase DDX3Y OS=Pan troglodytes OX=9598 GN=DDX3Y PE=2 SV=1 Length=660 Score = 43.5 bits (101), Expect = 0.007, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 50/90 (56%), Gaps = 5/90 (6%) Query 384 LLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVA 441 L++++ ++G +++ L G + S H +QRD++E + +F+ G +LVAT+VA Sbjct 443 LVFVETKKGADSLE---DFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVA 499 Query 442 EEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 GLDI + V+ + L ++ V GR Sbjct 500 ARGLDISNVRHVINFDLPSDIEEYVHRIGR 529 >sp|A5DF03|PRP28_PICGU Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=PRP28 PE=3 SV=2 Length=575 Score = 43.5 bits (101), Expect = 0.007, Method: Compositional matrix adjust. Identities = 35/145 (24%), Positives = 66/145 (46%), Gaps = 17/145 (12%) Query 349 PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN 408 P+ + L++ + P IIF +++ L + L Q ++ + ++I Sbjct 413 PRTNKMISALRQHIRETEQPLIIIFANFKRTCELLSVELSNQ------NVGSNIVIHGSK 466 Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISM 465 S Q ++ I F++ +N+L+AT VA G+DIP+ ++VV Y + I Sbjct 467 S-------QEARESAIASFREHKVNVLIATDVAARGIDIPNVSLVVNYHMPKRFDEYIHR 519 Query 466 VQARGRARADQSVYAFVATEGSREL 490 + GRA + +FV +G E+ Sbjct 520 IGRTGRAGKSGASLSFV-DDGDSEI 543 >sp|P0A4D8|CSHA_STRR6 DEAD-box ATP-dependent RNA helicase CshA OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) OX=171101 GN=cshA PE=3 SV=1 Length=524 Score = 43.1 bits (100), Expect = 0.007, Method: Compositional matrix adjust. Identities = 36/117 (31%), Positives = 56/117 (48%), Gaps = 19/117 (16%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 I+F RT++ L +GL+ RA+ + G + Q + V++ F++G Sbjct 243 IVFGRTKRRVDEL------TRGLKIRGFRAEGIHG--------DLDQNKRLRVLRDFKNG 288 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR----ARADQSVYAFVA 483 L++LVAT VA GLDI V Y + + S V GR ++ QS+ FVA Sbjct 289 NLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSI-TFVA 344 >sp|P0A4D7|CSHA_STRPN DEAD-box ATP-dependent RNA helicase CshA OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) OX=170187 GN=cshA PE=3 SV=1 Length=524 Score = 43.1 bits (100), Expect = 0.007, Method: Compositional matrix adjust. Identities = 36/117 (31%), Positives = 56/117 (48%), Gaps = 19/117 (16%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 I+F RT++ L +GL+ RA+ + G + Q + V++ F++G Sbjct 243 IVFGRTKRRVDEL------TRGLKIRGFRAEGIHG--------DLDQNKRLRVLRDFKNG 288 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR----ARADQSVYAFVA 483 L++LVAT VA GLDI V Y + + S V GR ++ QS+ FVA Sbjct 289 NLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSI-TFVA 344 >sp|Q7SH33|PRP5_NEUCR Pre-mRNA-processing ATP-dependent RNA helicase prp-5 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=prp-5 PE=3 SV=1 Length=1194 Score = 43.5 bits (101), Expect = 0.007, Method: Compositional matrix adjust. Identities = 36/142 (25%), Positives = 56/142 (39%), Gaps = 17/142 (12%) Query 347 ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA 406 E K L ++L ++ + R +IF ++ A LL L L G Sbjct 791 EGKKFNRLLELLGELYADDDDVRSLIFVERQEKADDLLREL--------------LRRGY 836 Query 407 GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEI 463 G S Q D+ I F+ G +L+ATS+A GLD+ +V+ Y L + + Sbjct 837 GCMSIHGGKDQEDRNSTISDFKKGVCPILIATSIAARGLDVKQLKLVINYDAPNHLEDYV 896 Query 464 SMVQARGRARADQSVYAFVATE 485 GRA + F+ E Sbjct 897 HRAGRTGRAGNTGTAVTFITEE 918 >sp|Q58969|Y1574_METJA Uncharacterized ATP-dependent helicase MJ1574 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ1574 PE=3 SV=1 Length=684 Score = 43.5 bits (101), Expect = 0.007, Method: Compositional matrix adjust. Identities = 38/168 (23%), Positives = 80/168 (48%), Gaps = 19/168 (11%) Query 340 HLATHGPEN-PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI 398 +LA P+N ++L ++++ N+ + ++F TR+ L+ +L + + Sbjct 250 YLAILEPKNLDNKQLLRRLIENL--VDNNIKTLVFFDTRKETEKLMRFLLNSKVFYKL-- 305 Query 399 RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL 458 S+ + + ++E+ +KF++G + L+ T+ E G+DI + V+ YG+ Sbjct 306 ----------STYKGTLPKYVREEIEEKFKNGEILALLTTNALELGIDIGDLDAVINYGI 355 Query 459 LTNEI-SMVQARGRA-RADQSVYAFVA--TEGSRELKRELINEALETL 502 + I S++Q GRA R D+ + +G +E +NE E + Sbjct 356 PPDGIFSLIQRFGRAGRRDKEALNIIVLRKDGLDYYYKEHLNELYERI 403 >sp|P58174|UVRB_MYCPU UvrABC system protein B OS=Mycoplasmopsis pulmonis (strain UAB CTIP) OX=272635 GN=uvrB PE=3 SV=1 Length=657 Score = 43.1 bits (100), Expect = 0.008, Method: Compositional matrix adjust. Identities = 35/141 (25%), Positives = 68/141 (48%), Gaps = 25/141 (18%) Query 358 LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ 417 LQ+Q + + R +I T T++ + L + Q++ G + I S H T Sbjct 436 LQKQ--KAKNERTLILTTTKRFSEELTRYFQEK-GEKVAYI------------HSDHKT- 479 Query 418 RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+++K + G +L++ ++ EG+D+P ++V+ + L N S++Q GRA Sbjct 480 FERNEILRKLRKGVYDLVIGINLLREGIDLPEVSLVIILDADKESFLRNTKSLIQIVGRA 539 Query 473 RADQS----VYAFVATEGSRE 489 + S YA ++ RE Sbjct 540 SRNSSGKVIFYADFVSKSMRE 560 >sp|A6RJA2|PRP28_BOTFB Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Botryotinia fuckeliana (strain B05.10) OX=332648 GN=prp28 PE=3 SV=2 Length=817 Score = 43.5 bits (101), Expect = 0.008, Method: Compositional matrix adjust. Identities = 36/118 (31%), Positives = 59/118 (50%), Gaps = 9/118 (8%) Query 416 TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA 474 TQ ++ + + G N+LVAT +A G+D+P ++VV + + TN S GR RA Sbjct 688 TQEQREAALASVRSGATNVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIGRTGRA 747 Query 475 DQSVYA--FVATEGSR---ELKRELINEALETLMEQA---VAAVQKMDQAEYQAKIRD 524 +S A F+ E S +LK+ L ++ + E+ AA QK + + KI + Sbjct 748 GKSGVAITFLGNEDSDTMYDLKQMLTKSSISRVPEELRKHEAAQQKSQRGQGMKKIEE 805 >sp|A7IB61|HELS_METB6 ATP-dependent DNA helicase Hel308 OS=Methanoregula boonei (strain DSM 21154 / JCM 14090 / 6A8) OX=456442 GN=hel308 PE=3 SV=1 Length=723 Score = 43.1 bits (100), Expect = 0.008, Method: Compositional matrix adjust. Identities = 42/165 (25%), Positives = 76/165 (46%), Gaps = 30/165 (18%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGR 74 L+GKN+++ +PT +GKT A RH+ +G K + +V L ++ EEF Sbjct 37 LDGKNLLVAIPTASGKTLIAEMAMHRHI--ANGGKCLYIVPLKALASEKYEEF------- 87 Query 75 WTVTTLSGDMGPRAGF--GHLAR------CHDLLICTAELLQMALTSPEEEEHVELTVFS 126 G+ G + G G L R +D+++ T+E + L + + + Sbjct 88 -------GNKGVKVGLSTGDLDRRDDALGKNDIIVATSEKVDSLLRNGAR----WIPDIT 136 Query 127 LIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPG 171 L+V+DE H D+ + + K++ P Q++GL+A+ G Sbjct 137 LVVIDEIHLI--DSPDRGPTLEMVIAKMRSKNPGMQLIGLSATIG 179 >sp|Q55BR9|DDX49_DICDI Probable ATP-dependent RNA helicase ddx49 OS=Dictyostelium discoideum OX=44689 GN=ddx49 PE=3 SV=1 Length=508 Score = 43.1 bits (100), Expect = 0.008, Method: Compositional matrix adjust. Identities = 19/60 (32%), Positives = 32/60 (53%), Gaps = 0/60 (0%) Query 413 THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA 472 + + Q+ + ++ F+ G + +LVAT VA GLDIP +V+ Y L + + GR Sbjct 277 SFLDQKSRLAALKTFKSGKVKVLVATDVASRGLDIPDVQIVINYKLSNSSKDYIHRVGRT 336 >sp|B9KH59|UVRB_ANAMF UvrABC system protein B OS=Anaplasma marginale (strain Florida) OX=320483 GN=uvrB PE=3 SV=1 Length=651 Score = 43.1 bits (100), Expect = 0.008, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 62/129 (48%), Gaps = 18/129 (14%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRARADQ 476 E+I + G +++LV ++ EGLDIP C +V + G L + S++Q GRA + Sbjct 485 EIISDLRLGVIDVLVGVNLMREGLDIPECALVGILDADKEGFLRSTTSLIQTIGRAARN- 543 Query 477 SVYAFVATEGSRELKRELINEALETLMEQA--VAAVQKMDQAEYQAKIRDLQ---QAALT 531 EG L +I +++ T ME+ +Q+ E+ R +Q Q +L+ Sbjct 544 -------VEGRVILYANVITKSMRTAMEETDRRRDIQRKYNQEHSIVPRTIQKPVQTSLS 596 Query 532 KRAAQAAQR 540 +R + ++ Sbjct 597 ERVGSSRKK 605 >sp|Q5U526|I4A3A_XENLA Eukaryotic initiation factor 4A-III-A OS=Xenopus laevis OX=8355 GN=eif4a3-a PE=2 SV=1 Length=415 Score = 42.7 bits (99), Expect = 0.008, Method: Compositional matrix adjust. Identities = 23/86 (27%), Positives = 43/86 (50%), Gaps = 3/86 (3%) Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE---ISM 465 SS M Q++++ ++++F+ G +L++T V GLD+P ++++ Y L N I Sbjct 309 SSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHR 368 Query 466 VQARGRARADQSVYAFVATEGSRELK 491 + GR FV + R L+ Sbjct 369 IGRSGRYGGKGVAINFVKNDDIRILR 394 >sp|Q5P9H3|UVRB_ANAMM UvrABC system protein B OS=Anaplasma marginale (strain St. Maries) OX=234826 GN=uvrB PE=3 SV=1 Length=651 Score = 43.1 bits (100), Expect = 0.008, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 62/129 (48%), Gaps = 18/129 (14%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRARADQ 476 E+I + G +++LV ++ EGLDIP C +V + G L + S++Q GRA + Sbjct 485 EIISDLRLGVIDVLVGVNLMREGLDIPECALVGILDADKEGFLRSTTSLIQTIGRAARN- 543 Query 477 SVYAFVATEGSRELKRELINEALETLMEQA--VAAVQKMDQAEYQAKIRDLQ---QAALT 531 EG L +I +++ T ME+ +Q+ E+ R +Q Q +L+ Sbjct 544 -------VEGRVILYANVITKSMRTAMEETDRRRDIQRKYNQEHSIVPRTIQKPVQTSLS 596 Query 532 KRAAQAAQR 540 +R + ++ Sbjct 597 ERVGSSRKK 605 >sp|C6DHF5|RHLB_PECCP ATP-dependent RNA helicase RhlB OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) OX=561230 GN=rhlB PE=3 SV=1 Length=430 Score = 42.7 bits (99), Expect = 0.008, Method: Compositional matrix adjust. Identities = 38/133 (29%), Positives = 59/133 (44%), Gaps = 19/133 (14%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +L+ ++ R IIF T+ + W L R LL G Sbjct 243 KMRLLQTLLEEEWPD----RCIIFANTKHRCEDI--WGH----LAADGHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q+ + ++++F G L++LVAT VA GL IP V Y L + V Sbjct 289 ----DVAQKKRLRILEEFTQGNLDILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRI 344 Query 470 GR-ARADQSVYAF 481 GR RA QS ++ Sbjct 345 GRTGRAGQSGFSI 357 >sp|Q5ZM36|IF4A3_CHICK Eukaryotic initiation factor 4A-III OS=Gallus gallus OX=9031 GN=EIF4A3 PE=2 SV=1 Length=412 Score = 42.7 bits (99), Expect = 0.009, Method: Compositional matrix adjust. Identities = 18/64 (28%), Positives = 37/64 (58%), Gaps = 0/64 (0%) Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 SS M Q++++ ++++F+ G +L++T V GLD+P ++++ Y L N + Sbjct 306 SSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHR 365 Query 469 RGRA 472 GR+ Sbjct 366 IGRS 369 >sp|B7ZTW1|IF4A3_XENTR Eukaryotic initiation factor 4A-III OS=Xenopus tropicalis OX=8364 GN=eif4a3 PE=2 SV=1 Length=415 Score = 42.7 bits (99), Expect = 0.009, Method: Compositional matrix adjust. Identities = 18/64 (28%), Positives = 37/64 (58%), Gaps = 0/64 (0%) Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 SS M Q++++ ++++F+ G +L++T V GLD+P ++++ Y L N + Sbjct 309 SSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHR 368 Query 469 RGRA 472 GR+ Sbjct 369 IGRS 372 >sp|A1DGZ7|DBP2_NEOFI ATP-dependent RNA helicase dbp2 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dbp2 PE=3 SV=1 Length=545 Score = 43.1 bits (100), Expect = 0.009, Method: Compositional matrix adjust. Identities = 39/150 (26%), Positives = 69/150 (46%), Gaps = 27/150 (18%) Query 351 LEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSS 410 ++ LEKI++ + + +IFT T++ A + +L+Q G + Sbjct 355 IKHLEKIMENRGNKC-----LIFTGTKRIADEITRFLRQD----------------GWPA 393 Query 411 QSTHMTQRDQQE--VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE---ISM 465 S H ++ Q+ V+ +F+ G ++VAT VA G+D+ V+ Y N I Sbjct 394 LSIHGDKQQQERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYIHR 453 Query 466 VQARGRARADQSVYAFVATEGSRELKRELI 495 + GRA A + F TE S++ R+L+ Sbjct 454 IGRTGRAGAKGTAITFFTTENSKQ-ARDLV 482 >sp|Q8N8A6|DDX51_HUMAN ATP-dependent RNA helicase DDX51 OS=Homo sapiens OX=9606 GN=DDX51 PE=1 SV=3 Length=666 Score = 43.1 bits (100), Expect = 0.009, Method: Compositional matrix adjust. Identities = 43/182 (24%), Positives = 86/182 (47%), Gaps = 34/182 (19%) Query 351 LEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSS 410 L +L +L+ FS R + FT +R+++H L L +Q G+ + ++ G G Sbjct 493 LVVLHLVLEMGFS-----RVLCFTNSRENSHRLFLLVQAFGGVDVAEFSSR--YGPGQ-- 543 Query 411 QSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARG 470 ++ ++++F+ G + LL++T G+D+ +VV Y + V G Sbjct 544 ---------RRMILKQFEQGKIQLLISTDATARGIDVQGVELVVNYDAPQYLRTYVHRVG 594 Query 471 R-ARADQSVYAF--------------VATEGSRELKR-ELINEALETLMEQAVAAVQKMD 514 R ARA ++ AF + G+ EL+R EL ++ L+ L+ + A+ +++ Sbjct 595 RTARAGKTGQAFTLLLKVQERRFLRMLTEAGAPELQRHELSSKLLQPLVPRYEEALSQLE 654 Query 515 QA 516 ++ Sbjct 655 ES 656 >sp|Q9C718|RH20_ARATH DEAD-box ATP-dependent RNA helicase 20 OS=Arabidopsis thaliana OX=3702 GN=RH20 PE=2 SV=1 Length=501 Score = 43.1 bits (100), Expect = 0.009, Method: Compositional matrix adjust. Identities = 25/84 (30%), Positives = 41/84 (49%), Gaps = 4/84 (5%) Query 416 TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY---GLLTNEISMVQARGRA 472 +Q ++ V+ +F+ G ++ AT VA GLD+ V+ Y G L + + + GRA Sbjct 379 SQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRA 438 Query 473 RADQSVYAFVATEGSRELKRELIN 496 A + Y F +R +EL N Sbjct 439 GAKGTAYTFFTVANAR-FAKELTN 461 >sp|B5FZY7|IF4A3_TAEGU Eukaryotic initiation factor 4A-III OS=Taeniopygia guttata OX=59729 GN=EIF4A3 PE=2 SV=1 Length=410 Score = 42.7 bits (99), Expect = 0.009, Method: Compositional matrix adjust. Identities = 18/64 (28%), Positives = 37/64 (58%), Gaps = 0/64 (0%) Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 SS M Q++++ ++++F+ G +L++T V GLD+P ++++ Y L N + Sbjct 304 SSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHR 363 Query 469 RGRA 472 GR+ Sbjct 364 IGRS 367 >sp|B5DG42|IF4A3_SALSA Eukaryotic initiation factor 4A-III OS=Salmo salar OX=8030 GN=eif4a3 PE=2 SV=1 Length=406 Score = 42.7 bits (99), Expect = 0.009, Method: Compositional matrix adjust. Identities = 18/64 (28%), Positives = 37/64 (58%), Gaps = 0/64 (0%) Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 SS M Q++++ ++++F+ G +L++T V GLD+P ++++ Y L N + Sbjct 300 SSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHR 359 Query 469 RGRA 472 GR+ Sbjct 360 IGRS 363 >sp|O42226|I4A3B_XENLA Eukaryotic initiation factor 4A-III-B OS=Xenopus laevis OX=8355 GN=eif4a3-b PE=2 SV=1 Length=414 Score = 42.7 bits (99), Expect = 0.009, Method: Compositional matrix adjust. Identities = 18/64 (28%), Positives = 37/64 (58%), Gaps = 0/64 (0%) Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 SS M Q++++ ++++F+ G +L++T V GLD+P ++++ Y L N + Sbjct 308 SSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHR 367 Query 469 RGRA 472 GR+ Sbjct 368 IGRS 371 >sp|Q91VC3|IF4A3_MOUSE Eukaryotic initiation factor 4A-III OS=Mus musculus OX=10090 GN=Eif4a3 PE=1 SV=3 Length=411 Score = 42.7 bits (99), Expect = 0.009, Method: Compositional matrix adjust. Identities = 18/64 (28%), Positives = 37/64 (58%), Gaps = 0/64 (0%) Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 SS M Q++++ ++++F+ G +L++T V GLD+P ++++ Y L N + Sbjct 305 SSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHR 364 Query 469 RGRA 472 GR+ Sbjct 365 IGRS 368 >sp|Q6C024|PRP28_YARLI Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=PRP28 PE=3 SV=1 Length=575 Score = 43.1 bits (100), Expect = 0.009, Method: Compositional matrix adjust. Identities = 28/97 (29%), Positives = 52/97 (54%), Gaps = 5/97 (5%) Query 377 RQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ--EVIQKFQDGTLNL 434 RQ ++++L ++ + V + L+ AG + H ++ +Q + +Q + G +++ Sbjct 428 RQYRPPIVVFLNYKRDCEAV---SDALVAAGWRTAIIHGGKQQEQREQAVQHLKRGAVDV 484 Query 435 LVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 LVAT VA GLDIP+ ++VV + + N S GR Sbjct 485 LVATDVAGRGLDIPNVSLVVNFQMANNIESYTHRIGR 521 >sp|Q2GID5|UVRB_ANAPZ UvrABC system protein B OS=Anaplasma phagocytophilum (strain HZ) OX=212042 GN=uvrB PE=3 SV=1 Length=653 Score = 43.1 bits (100), Expect = 0.009, Method: Compositional matrix adjust. Identities = 20/59 (34%), Positives = 36/59 (61%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ ++I + + G +++L+ ++ EGLDIP C +V + G L +E S+VQ GRA Sbjct 482 ERMDIIAQLRTGEIDVLIGVNLLREGLDIPECALVCILDADKEGFLRSETSLVQTIGRA 540 >sp|Q54IV3|DDX42_DICDI Probable ATP-dependent RNA helicase ddx42 OS=Dictyostelium discoideum OX=44689 GN=ddx42 PE=3 SV=1 Length=986 Score = 43.1 bits (100), Expect = 0.009, Method: Compositional matrix adjust. Identities = 19/40 (48%), Positives = 27/40 (68%), Gaps = 0/40 (0%) Query 417 QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY 456 Q ++ + IQ F++G +N+L+AT VA GLDIP VV Y Sbjct 586 QIERSQTIQTFKEGKINILIATDVAARGLDIPLIKNVVNY 625 >sp|Q3B8Q2|IF4A3_RAT Eukaryotic initiation factor 4A-III OS=Rattus norvegicus OX=10116 GN=Eif4a3 PE=1 SV=1 Length=411 Score = 42.7 bits (99), Expect = 0.009, Method: Compositional matrix adjust. Identities = 18/64 (28%), Positives = 37/64 (58%), Gaps = 0/64 (0%) Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 SS M Q++++ ++++F+ G +L++T V GLD+P ++++ Y L N + Sbjct 305 SSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHR 364 Query 469 RGRA 472 GR+ Sbjct 365 IGRS 368 >sp|A6M931|IF4A3_PIG Eukaryotic initiation factor 4A-III OS=Sus scrofa OX=9823 GN=EIF4A3 PE=2 SV=1 Length=411 Score = 42.7 bits (99), Expect = 0.009, Method: Compositional matrix adjust. Identities = 18/64 (28%), Positives = 37/64 (58%), Gaps = 0/64 (0%) Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 SS M Q++++ ++++F+ G +L++T V GLD+P ++++ Y L N + Sbjct 305 SSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHR 364 Query 469 RGRA 472 GR+ Sbjct 365 IGRS 368 >sp|Q2NL22|IF4A3_BOVIN Eukaryotic initiation factor 4A-III OS=Bos taurus OX=9913 GN=EIF4A3 PE=2 SV=3 Length=411 Score = 42.7 bits (99), Expect = 0.009, Method: Compositional matrix adjust. Identities = 18/64 (28%), Positives = 37/64 (58%), Gaps = 0/64 (0%) Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 SS M Q++++ ++++F+ G +L++T V GLD+P ++++ Y L N + Sbjct 305 SSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHR 364 Query 469 RGRA 472 GR+ Sbjct 365 IGRS 368 >sp|Q4R3Q1|IF4A3_MACFA Eukaryotic initiation factor 4A-III OS=Macaca fascicularis OX=9541 GN=EIF4A3 PE=2 SV=3 Length=411 Score = 42.7 bits (99), Expect = 0.010, Method: Compositional matrix adjust. Identities = 18/64 (28%), Positives = 37/64 (58%), Gaps = 0/64 (0%) Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 SS M Q++++ ++++F+ G +L++T V GLD+P ++++ Y L N + Sbjct 305 SSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHR 364 Query 469 RGRA 472 GR+ Sbjct 365 IGRS 368 >sp|P38919|IF4A3_HUMAN Eukaryotic initiation factor 4A-III OS=Homo sapiens OX=9606 GN=EIF4A3 PE=1 SV=4 Length=411 Score = 42.7 bits (99), Expect = 0.010, Method: Compositional matrix adjust. Identities = 18/64 (28%), Positives = 37/64 (58%), Gaps = 0/64 (0%) Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 SS M Q++++ ++++F+ G +L++T V GLD+P ++++ Y L N + Sbjct 305 SSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHR 364 Query 469 RGRA 472 GR+ Sbjct 365 IGRS 368 >sp|A1CQA9|PRP5_ASPCL Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=prp5 PE=3 SV=1 Length=1192 Score = 43.1 bits (100), Expect = 0.010, Method: Compositional matrix adjust. Identities = 48/174 (28%), Positives = 75/174 (43%), Gaps = 25/174 (14%) Query 347 ENPKLEMLEKILQRQFS--SSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI 404 E+ K L +IL +S ++ R +IF +++A +LL L ++ Sbjct 787 EDTKFVRLLEILGNLYSDDANEDARSLIFVERQEAADALLRELMRK-------------- 832 Query 405 GAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---L 459 G S H Q D+ I+ F+ G +L+ATSVA GLD+ +VV Y L Sbjct 833 --GYPCMSIHGGKDQIDRDSTIEDFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHL 890 Query 460 TNEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM 513 + + GRA + F+ E +E I +AL+ +Q VQKM Sbjct 891 EDYVHRAGRTGRAGNTGTAVTFLTEE--QERYSVDIAKALKQSGQQVPEPVQKM 942 >sp|Q755A5|DBP3_EREGS ATP-dependent RNA helicase DBP3 OS=Eremothecium gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=DBP3 PE=3 SV=1 Length=535 Score = 42.7 bits (99), Expect = 0.010, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 45/85 (53%), Gaps = 4/85 (5%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL-LTNE--ISMVQARGR 471 ++Q+ + + + +F+ GT NLL+AT VA GLDIP+ V+ LT E + + GR Sbjct 405 LSQQQRTQALSEFKAGTANLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGR 464 Query 472 ARADQSVYAFVATEGSRELKRELIN 496 A A + TE + L L+N Sbjct 465 AGATGVAHTLF-TEQEKHLAGALVN 488 >sp|Q8H136|RH14_ARATH DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana OX=3702 GN=RH14 PE=1 SV=2 Length=619 Score = 42.7 bits (99), Expect = 0.010, Method: Compositional matrix adjust. Identities = 41/142 (29%), Positives = 61/142 (43%), Gaps = 21/142 (15%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K LE+IL+ Q S IIF T++ L L +Q G + G+ Sbjct 389 KQRRLEQILRSQEPGSKV---IIFCSTKRMCDQLTRNLTRQFGAAAIH---------GDK 436 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMV 466 SQ +RD V+ +F+ G +LVAT VA GLD+ VV Y + + + + Sbjct 437 SQP----ERDN--VLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRI 490 Query 467 QARGRARADQSVYAFVATEGSR 488 GRA A + F + S+ Sbjct 491 GRTGRAGATGQAFTFFGDQDSK 512 Score = 33.9 bits (76), Expect = 6.1, Method: Compositional matrix adjust. Identities = 37/139 (27%), Positives = 58/139 (42%), Gaps = 17/139 (12%) Query 3 LRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVD-----GAKVVVLVNRV 57 +++ W + A++G++I+ TG+GKT HL+ + G ++VL Sbjct 184 IQAQSWPI---AMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTR 240 Query 58 HLVTQHGEE---FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP 114 L TQ EE F R R + T L G L R D+++ T L L Sbjct 241 ELATQIQEEAVKFGR--SSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDIL--- 295 Query 115 EEEEHVELTVFSLIVVDEC 133 E + L S +V+DE Sbjct 296 -EMRRISLRQISYLVLDEA 313 >sp|Q0DLB9|RH17_ORYSJ DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa subsp. japonica OX=39947 GN=RH17 PE=2 SV=2 Length=591 Score = 42.7 bits (99), Expect = 0.011, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 3/110 (3%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSA---HSLLLWLQQQQGLQTVDIRAQLLIGA 406 +L +L IL+ F S + ++F T S H++L L+ GLQ + Q I Sbjct 306 RLAILLTILKSLFERQLSHKVVVFLSTCDSVDFHHTVLSQLEWSPGLQLDTDKKQKFISC 365 Query 407 GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY 456 +M Q D+++ F +LV+T VA GLD P +++Y Sbjct 366 KVFRLHGNMDQDDRKKSFLGFSSEKSAILVSTDVAARGLDFPKVKCIIQY 415 >sp|O22907|RH24_ARATH DEAD-box ATP-dependent RNA helicase 24 OS=Arabidopsis thaliana OX=3702 GN=RH24 PE=1 SV=2 Length=760 Score = 42.7 bits (99), Expect = 0.011, Method: Compositional matrix adjust. Identities = 35/113 (31%), Positives = 52/113 (46%), Gaps = 17/113 (15%) Query 395 TVD-IRAQLLIGA-------GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLD 446 TVD I AQL + + G+ Q++ M E +QKF+ G ++L+AT VA GLD Sbjct 485 TVDEIEAQLTLNSFKVAALHGDKDQASRM------ETLQKFKSGVHHVLIATDVAARGLD 538 Query 447 IPHCNVVVRYGLLTN---EISMVQARGRARADQSVYAFVATEGSRELKRELIN 496 I VV Y + + + + GRA V + T+ EL+N Sbjct 539 IKSLKTVVNYDIAKDMDMHVHRIGRTGRAGDRDGVAYTLVTQREARFAGELVN 591 >sp|Q553B1|DDX46_DICDI ATP-dependent RNA helicase ddx46 OS=Dictyostelium discoideum OX=44689 GN=helB1 PE=2 SV=1 Length=1151 Score = 42.7 bits (99), Expect = 0.011, Method: Compositional matrix adjust. Identities = 36/126 (29%), Positives = 56/126 (44%), Gaps = 11/126 (9%) Query 374 TRTRQSAHSLLLWLQQQQGL------QTVDIRAQLLIGAGNSSQSTHMT--QRDQQEVIQ 425 TR R+ L +W + Q L +T D + L + S H + Q D+ E I Sbjct 741 TRFRRLIELLSIWYHKGQILIFTNRQETTDNLYRQLSNSQYQCLSLHGSKDQTDRDETIS 800 Query 426 KFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGRARADQSVYAFV 482 F++ +L+AT +A GLDI N+VV + L + + V GRA + Y F+ Sbjct 801 DFKNKVKTILIATPLASRGLDIKDLNLVVNFDCPDHLEDYVHRVGRTGRAGNRGTAYTFI 860 Query 483 ATEGSR 488 + R Sbjct 861 TPDEER 866 >sp|Q6C9P3|DBP3_YARLI ATP-dependent RNA helicase DBP3 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DBP3 PE=3 SV=1 Length=532 Score = 42.4 bits (98), Expect = 0.012, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 6/96 (6%) Query 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL-LTNE- 462 G G ++ ++Q+ + + + +F+ G N+L+AT VA GLDIP+ +V+ LT E Sbjct 392 GYGVAAIHGDLSQQQRTKALDEFKKGEKNILLATDVAARGLDIPNVKLVINLTFPLTVED 451 Query 463 -ISMVQARGRA-RADQSVYAFVATEGSRELKRELIN 496 + + GRA + Q++ F TE + L LIN Sbjct 452 YVHRIGRTGRAGKTGQAITLF--TEHEKHLSGALIN 485 >sp|A5DDF4|PRP5_PICGU Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=PRP5 PE=3 SV=2 Length=862 Score = 42.7 bits (99), Expect = 0.013, Method: Compositional matrix adjust. Identities = 44/152 (29%), Positives = 75/152 (49%), Gaps = 23/152 (15%) Query 350 KLEMLEKILQRQFSSSNSPRG--IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG 407 KL+ L KI+ +FS + P G +IF +++A L++ L Q I ++ G Sbjct 505 KLQALLKIVD-EFSVED-PEGKILIFVDKQEAADDLMVRLLNNQ------ISCIVIHGGK 556 Query 408 NSSQSTHMTQRDQQEVIQKFQDGT-LNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEI 463 + Q D++ I++F D L +L+ATS+A GLD+ N+V+ Y + + + Sbjct 557 D--------QVDRKHAIKQFSDKNGLRVLIATSIAARGLDVRGLNLVINYDAPSHMEDYV 608 Query 464 SMVQARGRARADQSVYAFVATEGSRELKRELI 495 V GRA A + V + RE+ R+L+ Sbjct 609 HRVGRTGRAGATGTAVTLVLSSQEREI-RDLV 639 >sp|Q59LU0|DBP2_CANAL ATP-dependent RNA helicase DBP2 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DBP2 PE=3 SV=2 Length=562 Score = 42.4 bits (98), Expect = 0.013, Method: Compositional matrix adjust. Identities = 30/113 (27%), Positives = 59/113 (52%), Gaps = 11/113 (10%) Query 417 QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY---GLLTNEISMVQARGRAR 473 Q ++ V+ +F+ G +++VAT VA G+D+ V+ Y G + + + + GR Sbjct 410 QNERDWVLDEFRKGKTSIMVATDVAARGIDVKGITHVINYDMPGNIEDYVHRIGRTGRGG 469 Query 474 ADQSVYAFVATEGSRELKREL---INEALETLMEQAVAAVQKMDQAEYQAKIR 523 A + +F TEG+ +L +L + EA +T+ + +Q+ D+ Y + +R Sbjct 470 ASGTAISFF-TEGNSKLGGDLCKIMREANQTVPPE----LQRFDRRSYGSHMR 517 >sp|Q814I2|DBPA_BACCR ATP-dependent RNA helicase DbpA OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711) OX=226900 GN=dbpA PE=2 SV=1 Length=481 Score = 42.4 bits (98), Expect = 0.013, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 33/64 (52%), Gaps = 1/64 (2%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR 473 M Q D+ EV+ F+ G LVAT VA G+DI + V+ Y + + S V GR R Sbjct 276 MVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGR 335 Query 474 ADQS 477 A S Sbjct 336 AGNS 339 >sp|Q0U6X2|MAK5_PHANO ATP-dependent RNA helicase MAK5 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) OX=321614 GN=MAK5 PE=3 SV=1 Length=817 Score = 42.7 bits (99), Expect = 0.013, Method: Compositional matrix adjust. Identities = 25/66 (38%), Positives = 38/66 (58%), Gaps = 1/66 (2%) Query 413 THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR- 471 + M Q+ + I++F++ ++LVAT VA GLDIP +V+ Y L + V GR Sbjct 573 SSMAQKARLRSIERFKERPGSILVATDVAARGLDIPKVELVIHYHLPRAADTYVHRSGRT 632 Query 472 ARADQS 477 ARA+ S Sbjct 633 ARAEAS 638 >sp|Q1DMX8|PRP28_COCIM Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Coccidioides immitis (strain RS) OX=246410 GN=PRP28 PE=3 SV=2 Length=820 Score = 42.7 bits (99), Expect = 0.013, Method: Compositional matrix adjust. Identities = 32/107 (30%), Positives = 57/107 (53%), Gaps = 8/107 (7%) Query 407 GNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 G SS + H TQ ++ + ++G ++LVAT +A G+D+P ++VV + + TN S Sbjct 679 GYSSVTLHGSKTQEQREAALASVRNGNTDVLVATDLAGRGIDVPDVSLVVNFNMATNIES 738 Query 465 MVQARGR-ARADQSVYA--FVATEGSR---ELKRELINEALETLMEQ 505 GR RA +S A F+ E + +LK+ L+ ++ + E+ Sbjct 739 YTHRIGRTGRAGKSGVAITFLGNEDADVMYDLKQMLMKSSISRVPEE 785 >sp|G0SFM2|DBP2_CHATD ATP-dependent RNA helicase DBP2 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) OX=759272 GN=DBP2 PE=3 SV=2 Length=556 Score = 42.4 bits (98), Expect = 0.013, Method: Compositional matrix adjust. Identities = 40/149 (27%), Positives = 71/149 (48%), Gaps = 21/149 (14%) Query 351 LEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSS 410 ++ LEKI+ S + +IF T++ A + +L+Q G + I G+ Sbjct 365 IKHLEKIMD---SRDTQNKCLIFVGTKRVADDITRFLRQD-GWPALSIH-------GDKQ 413 Query 411 QSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE---ISMVQ 467 Q+ +RD V+ +F+ G ++VAT VA G+D+ + V+ Y N I + Sbjct 414 QN----ERDW--VLDQFKTGKSPIMVATDVASRGIDVRNITHVINYDYPNNSEDYIHRIG 467 Query 468 ARGRARADQSVYAFVATEGSRELKRELIN 496 GRA A + F TE +++ R+L++ Sbjct 468 RTGRAGAKGTAITFFTTENAKQ-ARDLVS 495 >sp|A3LQ55|PRP5_PICST Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) OX=322104 GN=PRP5 PE=3 SV=2 Length=875 Score = 42.7 bits (99), Expect = 0.013, Method: Compositional matrix adjust. Identities = 37/151 (25%), Positives = 77/151 (51%), Gaps = 13/151 (9%) Query 350 KLEMLEKILQRQFSSSNSPR--GIIFTRTRQSAHS-LLLWLQQQQGLQTVDIRAQLLIGA 406 K+E+ EK Q R I+ + +S HS +L+++++Q + ++ L+G+ Sbjct 497 KVELFEKGESSQLEDEKFDRLLNILNVFSIESKHSKVLIFVEKQSAADDLLVK---LLGS 553 Query 407 GNSSQSTH--MTQRDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---L 459 + + H Q D++ I++F +D +++L+ATS+A GLD+ ++V+ Y + Sbjct 554 NHPCLTIHGGKDQIDRKYAIKEFSSKDSGVDILIATSIAARGLDVKGLDLVINYDPPNHM 613 Query 460 TNEISMVQARGRARADQSVYAFVATEGSREL 490 + + V GRA + FV+++ R + Sbjct 614 EDYVHRVGRTGRAGMKGTAITFVSSDQERSV 644 >sp|Q2HAD8|PRP5_CHAGB Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=PRP5 PE=3 SV=1 Length=1064 Score = 42.7 bits (99), Expect = 0.013, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 56/142 (39%), Gaps = 17/142 (12%) Query 347 ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA 406 E K L ++L ++ + R +IF ++ A LL R L G Sbjct 659 EGKKFVRLLELLGELYADDDDVRALIFVERQEKADDLL--------------REVLRRGY 704 Query 407 GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEI 463 G S Q D+ I F+ G +++ATSVA GLD+ +VV Y L + + Sbjct 705 GCMSIHGGKDQEDRNSTISDFKKGVCPIMIATSVAARGLDVKQLKLVVNYDAPNHLEDYV 764 Query 464 SMVQARGRARADQSVYAFVATE 485 GRA + F+ E Sbjct 765 HRAGRTGRAGNTGTAVTFITEE 786 >sp|P9WH05|DEAD_MYCTU ATP-dependent RNA helicase DeaD OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=deaD PE=1 SV=1 Length=563 Score = 42.4 bits (98), Expect = 0.014, Method: Compositional matrix adjust. Identities = 31/113 (27%), Positives = 53/113 (47%), Gaps = 15/113 (13%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 I+F RT+Q+ + L+ + G ++ S + Q ++ I +DG Sbjct 254 IVFVRTKQATEEIAEKLRAR--------------GFSAAAISGDVPQAQRERTITALRDG 299 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFV 482 +++LVAT VA GLD+ + V+ Y + + S V GR RA +S A + Sbjct 300 DIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALI 352 >sp|P9WH04|DEAD_MYCTO ATP-dependent RNA helicase DeaD OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=deaD PE=3 SV=1 Length=563 Score = 42.4 bits (98), Expect = 0.014, Method: Compositional matrix adjust. Identities = 31/113 (27%), Positives = 53/113 (47%), Gaps = 15/113 (13%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 I+F RT+Q+ + L+ + G ++ S + Q ++ I +DG Sbjct 254 IVFVRTKQATEEIAEKLRAR--------------GFSAAAISGDVPQAQRERTITALRDG 299 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFV 482 +++LVAT VA GLD+ + V+ Y + + S V GR RA +S A + Sbjct 300 DIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALI 352 >sp|A7EGG4|PRP28_SCLS1 Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 GN=prp28 PE=3 SV=1 Length=816 Score = 42.4 bits (98), Expect = 0.014, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 6/96 (6%) Query 416 TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA 474 TQ ++ + + G N+LVAT +A G+D+P ++VV + + TN S GR RA Sbjct 687 TQEQREAALASVRSGATNVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIGRTGRA 746 Query 475 DQSVYA--FVATEGSR---ELKRELINEALETLMEQ 505 +S A F+ E + +LK+ L+ ++ + E+ Sbjct 747 GKSGVAITFLGNEDADTMYDLKQMLMKSSISRVPEE 782 >sp|Q6CJU1|DBP5_KLULA ATP-dependent RNA helicase DBP5 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=DBP5 PE=3 SV=1 Length=469 Score = 42.4 bits (98), Expect = 0.014, Method: Compositional matrix adjust. Identities = 27/91 (30%), Positives = 48/91 (53%), Gaps = 14/91 (15%) Query 370 GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD 429 IIF +T+Q+A+ L L+++ Q+ I G+ + +D+ +I F++ Sbjct 320 SIIFVKTKQTANLLYAKLKKEG--------HQVSILHGD------LQSQDRDRLIDDFRE 365 Query 430 GTLNLLVATSVAEEGLDIPHCNVVVRYGLLT 460 G +L+ T+V G+DIP ++VV Y L T Sbjct 366 GRSKVLITTNVLARGIDIPSVSMVVNYDLPT 396 >sp|P34689|GLH1_CAEEL ATP-dependent RNA helicase glh-1 OS=Caenorhabditis elegans OX=6239 GN=glh-1 PE=1 SV=3 Length=763 Score = 42.4 bits (98), Expect = 0.014, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 35/55 (64%), Gaps = 0/55 (0%) Query 417 QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 QR++ E +++F++G+ +L+AT+VAE GLDI + V+ Y + N + GR Sbjct 642 QRERSEALRQFRNGSKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGR 696 >sp|Q84UQ1|RH42_ORYSJ DEAD-box ATP-dependent RNA helicase 42 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0159900 PE=2 SV=1 Length=1049 Score = 42.7 bits (99), Expect = 0.014, Method: Compositional matrix adjust. Identities = 32/108 (30%), Positives = 54/108 (50%), Gaps = 12/108 (11%) Query 417 QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARAD 475 Q D++ + F+ +LL+ATSVA GLD+ +VV Y + + V GR RA Sbjct 707 QTDRESTLADFKSNVCSLLIATSVAARGLDVKELELVVNYDVPNHYEDYVHRVGRTGRAG 766 Query 476 QSVYA--FVATEGSR---------ELKRELINEALETLMEQAVAAVQK 512 + +A F++ E R EL + + E L+ L ++ +A V++ Sbjct 767 RKGFAVTFISEEEERYAPDLVKALELSEQAVPEDLKGLADRFMAKVKQ 814 >sp|Q09719|DBP10_SCHPO ATP-dependent RNA helicase dbp10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=dbp10 PE=1 SV=1 Length=848 Score = 42.4 bits (98), Expect = 0.014, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 66/146 (45%), Gaps = 21/146 (14%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQ-----------SAHSLLLWLQQQQGLQTVDI 398 KL + + + R+ + N+P+ R R S S L+++ + ++ V Sbjct 309 KLPLKDNVRPREIGNVNNPK----KRKRALELALKGSESGSPDSTLVFVPTKHHVEYV-- 362 Query 399 RAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY 456 ++LL+ AG S + + Q + I F+ G NLLV T VA G+DIP V+ Y Sbjct 363 -SELLVQAGYSVSKIYGSLDQEARLNEINNFRLGKTNLLVVTDVASRGIDIPLLANVINY 421 Query 457 GLLTNEISMVQARGR-ARADQSVYAF 481 V GR ARA ++ +A+ Sbjct 422 DFPPQPKVFVHRVGRTARAGRTGWAY 447 >sp|O94761|RECQ4_HUMAN ATP-dependent DNA helicase Q4 OS=Homo sapiens OX=9606 GN=RECQL4 PE=1 SV=2 Length=1208 Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust. Identities = 39/135 (29%), Positives = 63/135 (47%), Gaps = 18/135 (13%) Query 398 IRAQLLIGAGNSSQST-------HMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHC 450 + A + G+G + T M R+++ V + F G L ++VAT GLD P Sbjct 724 LHAAWVPGSGGRAPKTTAEAYHAGMCSRERRRVQRAFMQGQLRVVVATVAFGMGLDRPDV 783 Query 451 NVVVRYGLLTNEISMVQARGRARADQS---VYAFVATEGS--RELKRELINEALETLMEQ 505 V+ GL + S VQA GRA D + F+ +G REL+R + ++ + L Sbjct 784 RAVLHLGLPPSFESYVQAVGRAGRDGQPAHCHLFLQPQGEDLRELRRHVHADSTDFL--- 840 Query 506 AVAAVQKMDQAEYQA 520 AV+++ Q + A Sbjct 841 ---AVKRLVQRVFPA 852 >sp|Q5B3H7|DBP8_EMENI ATP-dependent RNA helicase dbp8 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=dbp8 PE=3 SV=1 Length=525 Score = 42.4 bits (98), Expect = 0.015, Method: Compositional matrix adjust. Identities = 34/111 (31%), Positives = 52/111 (47%), Gaps = 19/111 (17%) Query 370 GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKF 427 I+FT T +SA D+ +LL G+ S H + Q ++ + +F Sbjct 353 AIVFTNTTKSA----------------DLLERLLRSLGHRVTSLHSLLPQSERNSNLARF 396 Query 428 QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQS 477 + +LVAT VA GLDIP ++VV + + N V GR ARA ++ Sbjct 397 RASAARVLVATDVASRGLDIPSVSLVVNFEVPRNPDDYVHRVGRTARAGRT 447 >sp|Q6H874|RH47A_ORYSJ DEAD-box ATP-dependent RNA helicase 47A OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0636300 PE=2 SV=1 Length=573 Score = 42.4 bits (98), Expect = 0.015, Method: Compositional matrix adjust. Identities = 17/49 (35%), Positives = 28/49 (57%), Gaps = 0/49 (0%) Query 423 VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 V++KF+DG +LV ++ GLD+P C++V+ L T+ GR Sbjct 473 VLKKFKDGEFRVLVTNELSARGLDVPECDLVINLDLPTDSTHYAHRAGR 521 >sp|Q2YUH3|CSHA_STAAB DEAD-box ATP-dependent RNA helicase CshA OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) OX=273036 GN=cshA PE=3 SV=1 Length=506 Score = 42.4 bits (98), Expect = 0.015, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 41/79 (52%), Gaps = 2/79 (3%) Query 396 VDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV 453 VD LI G ++ H +TQ + EV++KF++ +N+LVAT VA GLDI + V Sbjct 253 VDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHV 312 Query 454 VRYGLLTNEISMVQARGRA 472 + + + S GR Sbjct 313 YNFDIPQDTESYTHRIGRT 331 >sp|P24346|DDX3_XENLA Putative ATP-dependent RNA helicase an3 OS=Xenopus laevis OX=8355 GN=an3 PE=2 SV=1 Length=697 Score = 42.4 bits (98), Expect = 0.015, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 5/90 (6%) Query 384 LLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVA 441 L++++ ++G D L G + S H +QRD++E + +F+ G +LVAT+VA Sbjct 486 LVFVETKKG---ADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVA 542 Query 442 EEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 GLDI + V+ + L ++ V GR Sbjct 543 ARGLDISNVKHVINFDLPSDIEEYVHRIGR 572 >sp|P37474|MFD_BACSU Transcription-repair-coupling factor OS=Bacillus subtilis (strain 168) OX=224308 GN=mfd PE=3 SV=1 Length=1177 Score = 42.4 bits (98), Expect = 0.015, Method: Compositional matrix adjust. Identities = 22/69 (32%), Positives = 43/69 (62%), Gaps = 2/69 (3%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS-MVQARGR-A 472 MT+ + + V+ F +G ++LV+T++ E G+DIP+ N ++ + +S + Q RGR Sbjct 868 MTENELETVMLSFLEGESDVLVSTTIIETGVDIPNVNTLIVFDADKMGLSQLYQLRGRVG 927 Query 473 RADQSVYAF 481 R+++ YA+ Sbjct 928 RSNRVAYAY 936 >sp|Q755N4|DBP2_EREGS ATP-dependent RNA helicase DBP2 OS=Eremothecium gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=DBP2 PE=3 SV=2 Length=557 Score = 42.4 bits (98), Expect = 0.015, Method: Compositional matrix adjust. Identities = 33/131 (25%), Positives = 62/131 (47%), Gaps = 22/131 (17%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE--VIQKFQ 428 IIF T+++ + +L+Q G + + H ++ Q+ V+ +F+ Sbjct 365 IIFASTKRTCDEITSYLRQD----------------GWPALAIHGDKQQQERDWVLNEFR 408 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRY---GLLTNEISMVQARGRARADQSVYAFVATE 485 G ++VAT VA G+D+ N V+ Y G + + + + GRA A + +F TE Sbjct 409 TGRSPIMVATDVAARGIDVKGINFVINYDMPGNIEDYVHRIGRTGRAGATGTAISFF-TE 467 Query 486 GSRELKRELIN 496 ++ L +LI+ Sbjct 468 ANKTLGAQLIS 478 >sp|Q9ZRZ8|RH28_ARATH DEAD-box ATP-dependent RNA helicase 28 OS=Arabidopsis thaliana OX=3702 GN=RH28 PE=2 SV=1 Length=789 Score = 42.4 bits (98), Expect = 0.015, Method: Compositional matrix adjust. Identities = 39/122 (32%), Positives = 58/122 (48%), Gaps = 16/122 (13%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 IIF+ T+Q+AH L + GL ++A L G ++TQ + + ++ F+ Sbjct 416 IIFSGTKQAAHRLKILF----GL--AGLKAAELHG--------NLTQAQRLDSLELFRKQ 461 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFV-ATEGSR 488 ++ L+AT VA GLDI V+ Y S V GR ARA + YA T+ R Sbjct 462 EVDFLIATDVAARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFVTDSDR 521 Query 489 EL 490 L Sbjct 522 SL 523 >sp|Q6CZD9|RHLB_PECAS ATP-dependent RNA helicase RhlB OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) OX=218491 GN=rhlB PE=3 SV=3 Length=430 Score = 42.0 bits (97), Expect = 0.016, Method: Compositional matrix adjust. Identities = 37/133 (28%), Positives = 60/133 (45%), Gaps = 19/133 (14%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +L+ ++ R IIF T+ + W L R LL G Sbjct 243 KMRLLQTLLEEEWPD----RCIIFANTKHRCEDV--WGH----LAADGHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q+ + ++++F G++++LVAT VA GL IP V Y L + V Sbjct 289 ----DVAQKKRLRILEEFTQGSIDILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRI 344 Query 470 GR-ARADQSVYAF 481 GR RA QS ++ Sbjct 345 GRTGRAGQSGFSI 357 >sp|Q5HPW4|RECG_STAEQ ATP-dependent DNA helicase RecG OS=Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A) OX=176279 GN=recG PE=3 SV=1 Length=682 Score = 42.4 bits (98), Expect = 0.016, Method: Compositional matrix adjust. Identities = 24/71 (34%), Positives = 43/71 (61%), Gaps = 10/71 (14%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQAR 469 MT D+ +V+QKF + +++LV+T+V E G+++P+ ++ R+GL T + Q R Sbjct 514 MTAEDKDQVMQKFSEHEIDILVSTTVVEVGVNVPNATFMMIYDADRFGLST----LHQLR 569 Query 470 GR-ARADQSVY 479 GR R++ Y Sbjct 570 GRVGRSEHQSY 580 >sp|Q0V1Z7|DRS1_PHANO ATP-dependent RNA helicase DRS1 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) OX=321614 GN=DRS1 PE=3 SV=1 Length=808 Score = 42.4 bits (98), Expect = 0.016, Method: Compositional matrix adjust. Identities = 40/157 (25%), Positives = 75/157 (48%), Gaps = 20/157 (13%) Query 344 HGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLL 403 G E+ +L L I ++ ++ R IIF R ++ AH + + L Sbjct 511 QGKEDKRLAYLMYICEKIYTE----RVIIFFRQKKEAHRVRVVF--------------AL 552 Query 404 IGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY-GLLTNE 462 G S +M+Q + + ++ F+ G + L+AT VA GLDI + + V+ Y ++E Sbjct 553 CGLKASELHGNMSQEQRIQAVEAFRSGKSSYLLATDVASRGLDIKNVSTVINYEAPQSHE 612 Query 463 ISMVQARGRARADQSVYA-FVATEGSRELKRELINEA 498 I + + ARA +S A +A E R++ ++ + ++ Sbjct 613 IYLHRVGRTARAGRSGRACTLAAEPDRKVVKQAVKQS 649 >sp|A4R8G3|DBP8_PYRO7 ATP-dependent RNA helicase DBP8 OS=Pyricularia oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 GN=DBP8 PE=3 SV=3 Length=579 Score = 42.4 bits (98), Expect = 0.016, Method: Compositional matrix adjust. Identities = 27/66 (41%), Positives = 35/66 (53%), Gaps = 3/66 (5%) Query 412 STHMTQRDQQEV--IQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 S H R QQ + + +F+ +LVAT VA GLDIP +VVV Y L + + Sbjct 432 SLHSKLRQQQRIDNLGRFRASAARILVATDVASRGLDIPEVSVVVNYDLPRDPDDYIHRV 491 Query 470 GR-ARA 474 GR ARA Sbjct 492 GRTARA 497 >sp|Q5B5E7|RRP3_EMENI ATP-dependent rRNA helicase rrp3 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=rrp3 PE=3 SV=1 Length=465 Score = 42.0 bits (97), Expect = 0.016, Method: Compositional matrix adjust. Identities = 35/112 (31%), Positives = 51/112 (46%), Gaps = 15/112 (13%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 IIFT T + L+ G + + QL SQS + + KF+ Sbjct 289 IIFTTTVHETQRVAFMLRAL-GFGAIPLHGQL-------SQSARLG------ALGKFRSR 334 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF 481 + ++LVAT VA GLDIP +VV + L + + + GR ARA +S A Sbjct 335 SRDILVATDVAARGLDIPSVDVVFNFDLPMDSKTYIHRVGRTARAGKSGVAI 386 >sp|A3LSN3|DRS1_PICST ATP-dependent RNA helicase DRS1 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) OX=322104 GN=DRS1 PE=3 SV=3 Length=741 Score = 42.4 bits (98), Expect = 0.016, Method: Compositional matrix adjust. Identities = 35/148 (24%), Positives = 67/148 (45%), Gaps = 20/148 (14%) Query 358 LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ 417 L ++ + R ++F ++SAH L + L L+G S +TQ Sbjct 462 LLKKLDPAQQSRIVVFVSRKESAHKLRIVLG--------------LLGMKVSELHGSLTQ 507 Query 418 RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL-LTNEISM--VQARGRARA 474 + + F+ + +L+ T +A GLDIP +V+ Y + ++E+ + V RA Sbjct 508 EQRLNNVNDFKKLIVPVLICTDLAARGLDIPKIEIVINYDMPKSHEVYLHRVGRTARAGR 567 Query 475 DQSVYAFVATEGSRELKRELINEALETL 502 D + +FV S R ++ +A+++L Sbjct 568 DGTSISFVGESTS---DRNIVKDAIKSL 592 >sp|Q6GEZ3|CSHA_STAAR DEAD-box ATP-dependent RNA helicase CshA OS=Staphylococcus aureus (strain MRSA252) OX=282458 GN=cshA PE=3 SV=1 Length=506 Score = 42.0 bits (97), Expect = 0.017, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 41/79 (52%), Gaps = 2/79 (3%) Query 396 VDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV 453 VD LI G ++ H +TQ + EV++KF++ +N+LVAT VA GLDI + V Sbjct 253 VDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHV 312 Query 454 VRYGLLTNEISMVQARGRA 472 + + + S GR Sbjct 313 YNFDIPQDTESYTHRIGRT 331 >sp|A4RN46|PRP5_PYRO7 Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Pyricularia oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 GN=PRP5 PE=3 SV=1 Length=1012 Score = 42.4 bits (98), Expect = 0.017, Method: Compositional matrix adjust. Identities = 38/142 (27%), Positives = 55/142 (39%), Gaps = 17/142 (12%) Query 347 ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA 406 E K L ++L + + R +IF ++ A LL R L G Sbjct 608 EKSKFNRLLELLGELYKDDDDVRSLIFVERQEKADELL--------------RELLRKGY 653 Query 407 GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEI 463 G S Q D+ I F+ G +++ATSVA GLD+ +VV Y L + + Sbjct 654 GCMSLHGGKDQVDRDSTISDFKSGVCPVMIATSVAARGLDVKQLKLVVNYDAPNHLEDYV 713 Query 464 SMVQARGRARADQSVYAFVATE 485 GRA + FV E Sbjct 714 HRAGRTGRAGNTGTAVTFVTEE 735 >sp|Q7A0D2|CSHA_STAAW DEAD-box ATP-dependent RNA helicase CshA OS=Staphylococcus aureus (strain MW2) OX=196620 GN=cshA PE=3 SV=1 Length=506 Score = 42.0 bits (97), Expect = 0.017, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 41/79 (52%), Gaps = 2/79 (3%) Query 396 VDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV 453 VD LI G ++ H +TQ + EV++KF++ +N+LVAT VA GLDI + V Sbjct 253 VDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHV 312 Query 454 VRYGLLTNEISMVQARGRA 472 + + + S GR Sbjct 313 YNFDIPQDTESYTHRIGRT 331 >sp|Q6G7M9|CSHA_STAAS DEAD-box ATP-dependent RNA helicase CshA OS=Staphylococcus aureus (strain MSSA476) OX=282459 GN=cshA PE=3 SV=1 Length=506 Score = 42.0 bits (97), Expect = 0.017, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 41/79 (52%), Gaps = 2/79 (3%) Query 396 VDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV 453 VD LI G ++ H +TQ + EV++KF++ +N+LVAT VA GLDI + V Sbjct 253 VDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHV 312 Query 454 VRYGLLTNEISMVQARGRA 472 + + + S GR Sbjct 313 YNFDIPQDTESYTHRIGRT 331 >sp|Q7A4G0|CSHA_STAAN DEAD-box ATP-dependent RNA helicase CshA OS=Staphylococcus aureus (strain N315) OX=158879 GN=cshA PE=1 SV=1 Length=506 Score = 42.0 bits (97), Expect = 0.017, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 41/79 (52%), Gaps = 2/79 (3%) Query 396 VDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV 453 VD LI G ++ H +TQ + EV++KF++ +N+LVAT VA GLDI + V Sbjct 253 VDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHV 312 Query 454 VRYGLLTNEISMVQARGRA 472 + + + S GR Sbjct 313 YNFDIPQDTESYTHRIGRT 331 >sp|Q99SH6|CSHA_STAAM DEAD-box ATP-dependent RNA helicase CshA OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) OX=158878 GN=cshA PE=1 SV=1 Length=506 Score = 42.0 bits (97), Expect = 0.017, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 41/79 (52%), Gaps = 2/79 (3%) Query 396 VDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV 453 VD LI G ++ H +TQ + EV++KF++ +N+LVAT VA GLDI + V Sbjct 253 VDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHV 312 Query 454 VRYGLLTNEISMVQARGRA 472 + + + S GR Sbjct 313 YNFDIPQDTESYTHRIGRT 331 >sp|Q5HEB9|CSHA_STAAC DEAD-box ATP-dependent RNA helicase CshA OS=Staphylococcus aureus (strain COL) OX=93062 GN=cshA PE=3 SV=1 Length=506 Score = 42.0 bits (97), Expect = 0.017, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 41/79 (52%), Gaps = 2/79 (3%) Query 396 VDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV 453 VD LI G ++ H +TQ + EV++KF++ +N+LVAT VA GLDI + V Sbjct 253 VDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHV 312 Query 454 VRYGLLTNEISMVQARGRA 472 + + + S GR Sbjct 313 YNFDIPQDTESYTHRIGRT 331 >sp|Q2FWH5|CSHA_STAA8 DEAD-box ATP-dependent RNA helicase CshA OS=Staphylococcus aureus (strain NCTC 8325 / PS 47) OX=93061 GN=cshA PE=1 SV=1 Length=506 Score = 42.0 bits (97), Expect = 0.017, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 41/79 (52%), Gaps = 2/79 (3%) Query 396 VDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV 453 VD LI G ++ H +TQ + EV++KF++ +N+LVAT VA GLDI + V Sbjct 253 VDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHV 312 Query 454 VRYGLLTNEISMVQARGRA 472 + + + S GR Sbjct 313 YNFDIPQDTESYTHRIGRT 331 >sp|Q2FF45|CSHA_STAA3 DEAD-box ATP-dependent RNA helicase CshA OS=Staphylococcus aureus (strain USA300) OX=367830 GN=cshA PE=3 SV=1 Length=506 Score = 42.0 bits (97), Expect = 0.017, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 41/79 (52%), Gaps = 2/79 (3%) Query 396 VDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV 453 VD LI G ++ H +TQ + EV++KF++ +N+LVAT VA GLDI + V Sbjct 253 VDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHV 312 Query 454 VRYGLLTNEISMVQARGRA 472 + + + S GR Sbjct 313 YNFDIPQDTESYTHRIGRT 331 >sp|Q9QY16|DDX25_RAT ATP-dependent RNA helicase DDX25 OS=Rattus norvegicus OX=10116 GN=Ddx25 PE=1 SV=2 Length=483 Score = 42.0 bits (97), Expect = 0.017, Method: Compositional matrix adjust. Identities = 26/94 (28%), Positives = 45/94 (48%), Gaps = 14/94 (15%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 + IIF +TR++A L + + Q G S S +T + +IQ+F+ Sbjct 340 QAIIFCQTRRNAKWLTVEMMQD--------------GHQVSLLSGELTVEQRASIIQRFR 385 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE 462 DG +L+ T+V G+D+ +VV + L N+ Sbjct 386 DGKEKVLITTNVCARGIDVKQVTIVVNFDLPVNQ 419 >sp|Q2U2J6|PRP5_ASPOR Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=prp5 PE=3 SV=1 Length=1186 Score = 42.4 bits (98), Expect = 0.017, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 6/147 (4%) Query 370 GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKF 427 G +++ L+++++Q+G T+ + L+ G S H Q D+ I+ F Sbjct 796 GNLYSTDENEDARALIFVERQEGADTL---LRELMRKGYPCMSIHGGKDQIDRDSTIEDF 852 Query 428 QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEG 486 + G +L+ATSVA GLD+ +VV Y + V GR RA + A Sbjct 853 KAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTE 912 Query 487 SRELKRELINEALETLMEQAVAAVQKM 513 +E I +AL+ + VQKM Sbjct 913 DQERYSVDIAKALKQSGQSVPEPVQKM 939 >sp|Q10PV9|RH47B_ORYSJ DEAD-box ATP-dependent RNA helicase 47B OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0219700 PE=2 SV=1 Length=573 Score = 42.0 bits (97), Expect = 0.018, Method: Compositional matrix adjust. Identities = 17/49 (35%), Positives = 28/49 (57%), Gaps = 0/49 (0%) Query 423 VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 V++KF+DG +LV ++ GLD+P C++V+ L T+ GR Sbjct 473 VLKKFKDGEFRVLVTNELSARGLDVPECDLVINLDLPTDSTHYAHRAGR 521 >sp|Q98I01|UVRB_RHILO UvrABC system protein B OS=Mesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099) OX=266835 GN=uvrB PE=3 SV=1 Length=870 Score = 42.4 bits (98), Expect = 0.018, Method: Compositional matrix adjust. Identities = 20/56 (36%), Positives = 32/56 (57%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+++ + G ++LV ++ EGLDIP C V + G L +E S++Q GRA Sbjct 481 EILRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRA 536 >sp|Q4WEB4|FAL1_ASPFU ATP-dependent RNA helicase fal1 OS=Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293) OX=330879 GN=fal1 PE=3 SV=2 Length=398 Score = 42.0 bits (97), Expect = 0.018, Method: Compositional matrix adjust. Identities = 19/64 (30%), Positives = 36/64 (56%), Gaps = 0/64 (0%) Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 SS M Q+++ ++Q F+ G +L++T V G+D+ ++V+ Y L TN + + Sbjct 291 SSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHR 350 Query 469 RGRA 472 GR+ Sbjct 351 IGRS 354 >sp|Q9QY15|DDX25_MOUSE ATP-dependent RNA helicase DDX25 OS=Mus musculus OX=10090 GN=Ddx25 PE=1 SV=2 Length=484 Score = 42.0 bits (97), Expect = 0.018, Method: Compositional matrix adjust. Identities = 26/94 (28%), Positives = 45/94 (48%), Gaps = 14/94 (15%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 + IIF +TR++A L + + Q G S S +T + +IQ+F+ Sbjct 341 QAIIFCQTRRNAKWLTVEMMQD--------------GHQVSLLSGELTVEQRASIIQRFR 386 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE 462 DG +L+ T+V G+D+ +VV + L N+ Sbjct 387 DGKEKVLITTNVCARGIDVKQVTIVVNFDLPVNQ 420 >sp|O51568|MFD_BORBU Transcription-repair-coupling factor OS=Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31) OX=224326 GN=mfd PE=3 SV=1 Length=1125 Score = 42.4 bits (98), Expect = 0.018, Method: Compositional matrix adjust. Identities = 22/82 (27%), Positives = 42/82 (51%), Gaps = 10/82 (12%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQAR 469 +T + + ++ F +L+AT++ E G+DIP+ N ++ ++GL + Q + Sbjct 827 LTGEEIENIMHNFIKKAYQILLATTIIENGIDIPNANTIIINNANKFGLA----QLYQLK 882 Query 470 GR-ARADQSVYAFVATEGSREL 490 GR R Q YA+ + S +L Sbjct 883 GRVGRGSQKAYAYFLYQDSEKL 904 >sp|Q38F76|IF4A_TRYB2 Probable eukaryotic initiation factor 4A OS=Trypanosoma brucei brucei (strain 927/4 GUTat10.1) OX=185431 GN=Tb09.160.3270 PE=3 SV=1 Length=404 Score = 41.6 bits (96), Expect = 0.018, Method: Compositional matrix adjust. Identities = 15/50 (30%), Positives = 35/50 (70%), Gaps = 0/50 (0%) Query 413 THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE 462 + M+++++++V+ F++G+ +LV T + G+D+ H N+V+ + L TN+ Sbjct 300 SEMSKQEREKVMGTFRNGSSRVLVTTDLVARGIDVHHVNIVINFDLPTNK 349 >sp|A1C595|FAL1_ASPCL ATP-dependent RNA helicase fal1 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=fal1 PE=3 SV=1 Length=399 Score = 41.6 bits (96), Expect = 0.018, Method: Compositional matrix adjust. Identities = 19/64 (30%), Positives = 36/64 (56%), Gaps = 0/64 (0%) Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 SS M Q+++ ++Q F+ G +L++T V G+D+ ++V+ Y L TN + + Sbjct 292 SSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHR 351 Query 469 RGRA 472 GR+ Sbjct 352 IGRS 355 >sp|Q6C799|DBP8_YARLI ATP-dependent RNA helicase DBP8 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DBP8 PE=3 SV=1 Length=442 Score = 42.0 bits (97), Expect = 0.019, Method: Compositional matrix adjust. Identities = 35/138 (25%), Positives = 62/138 (45%), Gaps = 8/138 (6%) Query 372 IFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGT 431 I T S ++++ + Q +T+ R + + +S + M Q+++ + +F+ Sbjct 241 ILTHPDNEKKSAIIFVNRTQTAETLR-RMLMALDVKTASLHSEMRQQERVNALGRFRAQA 299 Query 432 LNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR----ARADQSVYAFVATEGS 487 +LVAT VA GLDIP +V+ + L + + GR R QSV + + Sbjct 300 ARVLVATDVASRGLDIPTVEMVINFDLPADADDYIHRVGRTARAGRKGQSVSLVTERDVT 359 Query 488 RELKRELINEALETLMEQ 505 R I E + T ME+ Sbjct 360 RVTN---IEERVGTKMEK 374 >sp|Q6P9R1|DDX51_MOUSE ATP-dependent RNA helicase DDX51 OS=Mus musculus OX=10090 GN=Ddx51 PE=1 SV=1 Length=639 Score = 42.0 bits (97), Expect = 0.019, Method: Compositional matrix adjust. Identities = 28/115 (24%), Positives = 55/115 (48%), Gaps = 14/115 (12%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 R + FT +R+++H L L Q G+ + ++ G G +++++++F+ Sbjct 479 RALCFTNSRENSHRLYLLAQAFGGVSVAEFSSRY--GPGQ-----------RKKILKQFE 525 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFV 482 G + LL++T G+D+ +V+ Y + V GR ARA ++ AF Sbjct 526 QGKIQLLISTDATARGIDVQGVELVINYDAPQYLRTYVHRVGRTARAGKTGQAFT 580 >sp|Q5AUL4|FAL1_EMENI ATP-dependent RNA helicase fal1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=fal1 PE=3 SV=1 Length=399 Score = 41.6 bits (96), Expect = 0.019, Method: Compositional matrix adjust. Identities = 19/64 (30%), Positives = 36/64 (56%), Gaps = 0/64 (0%) Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 SS M Q+++ ++Q F+ G +L++T V G+D+ ++V+ Y L TN + + Sbjct 292 SSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHR 351 Query 469 RGRA 472 GR+ Sbjct 352 IGRS 355 >sp|Q4IAA0|FAL1_GIBZE ATP-dependent RNA helicase FAL1 OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=FAL1 PE=3 SV=1 Length=401 Score = 41.6 bits (96), Expect = 0.019, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 3/86 (3%) Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 SS M Q+++ ++Q F+ G +L++T V G+D+ ++V+ Y L +N + + Sbjct 294 SSMHGDMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHR 353 Query 469 RGRA-RADQSVYA--FVATEGSRELK 491 GR+ R + A FV TE R L+ Sbjct 354 IGRSGRFGRKGVAINFVTTEDVRILR 379 >sp|Q0CAS8|FAL1_ASPTN ATP-dependent RNA helicase fal1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=fal1 PE=3 SV=1 Length=399 Score = 41.6 bits (96), Expect = 0.019, Method: Compositional matrix adjust. Identities = 19/64 (30%), Positives = 36/64 (56%), Gaps = 0/64 (0%) Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 SS M Q+++ ++Q F+ G +L++T V G+D+ ++V+ Y L TN + + Sbjct 292 SSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHR 351 Query 469 RGRA 472 GR+ Sbjct 352 IGRS 355 >sp|Q8NX11|RECG_STAAW ATP-dependent DNA helicase RecG OS=Staphylococcus aureus (strain MW2) OX=196620 GN=recG PE=3 SV=1 Length=686 Score = 42.0 bits (97), Expect = 0.019, Method: Compositional matrix adjust. Identities = 24/71 (34%), Positives = 44/71 (62%), Gaps = 10/71 (14%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQAR 469 ++ ++ EV+QKF + +++LV+T+V E G+++P+ ++ R+GL T + Q R Sbjct 518 LSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNVPNATFMMIYDADRFGLST----LHQLR 573 Query 470 GR-ARADQSVY 479 GR R+DQ Y Sbjct 574 GRVGRSDQQSY 584 >sp|Q6G9Y6|RECG_STAAS ATP-dependent DNA helicase RecG OS=Staphylococcus aureus (strain MSSA476) OX=282459 GN=recG PE=3 SV=1 Length=686 Score = 42.0 bits (97), Expect = 0.019, Method: Compositional matrix adjust. Identities = 24/71 (34%), Positives = 44/71 (62%), Gaps = 10/71 (14%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQAR 469 ++ ++ EV+QKF + +++LV+T+V E G+++P+ ++ R+GL T + Q R Sbjct 518 LSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNVPNATFMMIYDADRFGLST----LHQLR 573 Query 470 GR-ARADQSVY 479 GR R+DQ Y Sbjct 574 GRVGRSDQQSY 584 >sp|P64325|RECG_STAAN ATP-dependent DNA helicase RecG OS=Staphylococcus aureus (strain N315) OX=158879 GN=recG PE=1 SV=1 Length=686 Score = 42.0 bits (97), Expect = 0.019, Method: Compositional matrix adjust. Identities = 24/71 (34%), Positives = 44/71 (62%), Gaps = 10/71 (14%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQAR 469 ++ ++ EV+QKF + +++LV+T+V E G+++P+ ++ R+GL T + Q R Sbjct 518 LSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNVPNATFMMIYDADRFGLST----LHQLR 573 Query 470 GR-ARADQSVY 479 GR R+DQ Y Sbjct 574 GRVGRSDQQSY 584 >sp|P64324|RECG_STAAM ATP-dependent DNA helicase RecG OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) OX=158878 GN=recG PE=3 SV=1 Length=686 Score = 42.0 bits (97), Expect = 0.019, Method: Compositional matrix adjust. Identities = 24/71 (34%), Positives = 44/71 (62%), Gaps = 10/71 (14%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQAR 469 ++ ++ EV+QKF + +++LV+T+V E G+++P+ ++ R+GL T + Q R Sbjct 518 LSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNVPNATFMMIYDADRFGLST----LHQLR 573 Query 470 GR-ARADQSVY 479 GR R+DQ Y Sbjct 574 GRVGRSDQQSY 584 >sp|Q2UAK1|FAL1_ASPOR ATP-dependent RNA helicase fal1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=fal1 PE=3 SV=1 Length=398 Score = 41.6 bits (96), Expect = 0.019, Method: Compositional matrix adjust. Identities = 19/64 (30%), Positives = 36/64 (56%), Gaps = 0/64 (0%) Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 SS M Q+++ ++Q F+ G +L++T V G+D+ ++V+ Y L TN + + Sbjct 291 SSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHR 350 Query 469 RGRA 472 GR+ Sbjct 351 IGRS 354 >sp|A5AAE5|FAL1_ASPNC ATP-dependent RNA helicase fal1 OS=Aspergillus niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) OX=425011 GN=fal1 PE=3 SV=2 Length=399 Score = 41.6 bits (96), Expect = 0.019, Method: Compositional matrix adjust. Identities = 19/64 (30%), Positives = 36/64 (56%), Gaps = 0/64 (0%) Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 SS M Q+++ ++Q F+ G +L++T V G+D+ ++V+ Y L TN + + Sbjct 292 SSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHR 351 Query 469 RGRA 472 GR+ Sbjct 352 IGRS 355 >sp|Q6GHK8|RECG_STAAR ATP-dependent DNA helicase RecG OS=Staphylococcus aureus (strain MRSA252) OX=282458 GN=recG PE=3 SV=1 Length=686 Score = 42.0 bits (97), Expect = 0.019, Method: Compositional matrix adjust. Identities = 24/71 (34%), Positives = 44/71 (62%), Gaps = 10/71 (14%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQAR 469 ++ ++ EV+QKF + +++LV+T+V E G+++P+ ++ R+GL T + Q R Sbjct 518 LSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNVPNATFMMIYDADRFGLST----LHQLR 573 Query 470 GR-ARADQSVY 479 GR R+DQ Y Sbjct 574 GRVGRSDQQSY 584 >sp|A1C6C4|DBP2_ASPCL ATP-dependent RNA helicase dbp2 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=dbp2 PE=3 SV=1 Length=549 Score = 42.0 bits (97), Expect = 0.019, Method: Compositional matrix adjust. Identities = 39/150 (26%), Positives = 69/150 (46%), Gaps = 27/150 (18%) Query 351 LEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSS 410 ++ LEKI++ S + +IFT T++ A + +L+Q G + Sbjct 361 IKHLEKIME-----DRSNKILIFTGTKRIADEITRFLRQD----------------GWPA 399 Query 411 QSTHMTQRDQQE--VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE---ISM 465 S H ++ Q+ V+ +F+ G ++VAT VA G+D+ V+ Y N I Sbjct 400 LSIHGDKQQQERDWVLNEFKAGKSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYIHR 459 Query 466 VQARGRARADQSVYAFVATEGSRELKRELI 495 + GRA A + F T+ S++ R+L+ Sbjct 460 IGRTGRAGAKGTAITFFTTDNSKQ-ARDLV 488 >sp|A1D071|FAL1_NEOFI ATP-dependent RNA helicase fal1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=fal1 PE=3 SV=1 Length=399 Score = 41.6 bits (96), Expect = 0.020, Method: Compositional matrix adjust. Identities = 19/64 (30%), Positives = 36/64 (56%), Gaps = 0/64 (0%) Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 SS M Q+++ ++Q F+ G +L++T V G+D+ ++V+ Y L TN + + Sbjct 292 SSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHR 351 Query 469 RGRA 472 GR+ Sbjct 352 IGRS 355 >sp|Q8SR63|RRP3_ENCCU ATP-dependent rRNA helicase RRP3 OS=Encephalitozoon cuniculi (strain GB-M1) OX=284813 GN=RRP3 PE=3 SV=1 Length=400 Score = 41.6 bits (96), Expect = 0.020, Method: Compositional matrix adjust. Identities = 29/118 (25%), Positives = 57/118 (48%), Gaps = 12/118 (10%) Query 372 IFTRTRQSAHSLLLWLQQQQGLQ---------TVDIRAQLLIGAGNSSQSTH--MTQRDQ 420 +F + +L+ L+ QG+ T + + L G S++ H ++Q + Sbjct 219 LFVAMKWKNSALVELLEMSQGMSVIVFVSMCVTARVMSLALARLGFCSEALHGELSQEKR 278 Query 421 QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQS 477 +E ++ F++ N+LV T + GLDI H ++V+ + + + + GR ARA +S Sbjct 279 EEAMRSFKESRFNVLVCTDLGSRGLDISHVDLVINFDVPKSGKDYIHRVGRTARAGRS 336 >sp|Q99MJ9|DDX50_MOUSE ATP-dependent RNA helicase DDX50 OS=Mus musculus OX=10090 GN=Ddx50 PE=2 SV=1 Length=734 Score = 42.0 bits (97), Expect = 0.021, Method: Compositional matrix adjust. Identities = 30/112 (27%), Positives = 53/112 (47%), Gaps = 15/112 (13%) Query 361 QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ 420 Q S + R IIF T+++ + + +Q AQ L G + Q + Sbjct 380 QVYSGSEGRAIIFCETKKNVTEMAMNPHIKQN-------AQCLHG--------DIAQSQR 424 Query 421 QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA 472 + ++ F++G+ +LVAT+VA GLDIP ++V++ + S + GR Sbjct 425 EITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRT 476 >sp|P0C2N8|DRS1_NEUCR ATP-dependent RNA helicase drs1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=drh-11 PE=3 SV=1 Length=829 Score = 42.0 bits (97), Expect = 0.021, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 57/124 (46%), Gaps = 16/124 (13%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 R IIF R ++ AH + + L G + M Q + + ++ F+ Sbjct 540 RVIIFFRQKKIAHKMRIIFG--------------LFGLSCAELHGSMNQAQRIQSVEDFR 585 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRY-GLLTNEISMVQARGRARADQSVYAF-VATEG 486 DG +N L+AT +A GLDI + V+ Y T EI + + ARA +S A +A E Sbjct 586 DGKVNFLLATDLASRGLDIKGVDTVINYEAPQTPEIYVHRVGRTARAGRSGTAITLAAEP 645 Query 487 SREL 490 R++ Sbjct 646 DRKV 649 >sp|P0CQ88|PRP28_CRYNJ Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=PRP28 PE=3 SV=1 Length=738 Score = 42.0 bits (97), Expect = 0.022, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 58/115 (50%), Gaps = 22/115 (19%) Query 344 HGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLL 403 HG E K ++E IL+ + P I+F +++A ++ ++QQ Sbjct 565 HGDEKKKARLIE-ILR---TIGLPPPIIVFVNQKKTADMVVKYVQQ-------------- 606 Query 404 IGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY 456 AG S + H +Q ++ +Q +DG +++LVAT +A G+D+P ++V+ + Sbjct 607 --AGMSGVTLHSGKSQEQREAALQALRDGEISVLVATDLAGRGIDVPDVSLVINW 659 >sp|P0CQ89|PRP28_CRYNB Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=PRP28 PE=3 SV=1 Length=738 Score = 42.0 bits (97), Expect = 0.022, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 58/115 (50%), Gaps = 22/115 (19%) Query 344 HGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLL 403 HG E K ++E IL+ + P I+F +++A ++ ++QQ Sbjct 565 HGDEKKKARLIE-ILR---TIGLPPPIIVFVNQKKTADMVVKYVQQ-------------- 606 Query 404 IGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY 456 AG S + H +Q ++ +Q +DG +++LVAT +A G+D+P ++V+ + Sbjct 607 --AGMSGVTLHSGKSQEQREAALQALRDGEISVLVATDLAGRGIDVPDVSLVINW 659 >sp|Q8YXS9|UVRB_NOSS1 UvrABC system protein B OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=uvrB PE=3 SV=1 Length=665 Score = 42.0 bits (97), Expect = 0.022, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 53/109 (49%), Gaps = 19/109 (17%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 R +I T T++ A L +LQ+ ++ + L NS Q E++Q + Sbjct 446 RVLITTLTKRMAEDLTEYLQEH------GVKVRYLHSEINSIQRI--------EILQDLR 491 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 G+ ++LV ++ EGLD+P ++V + G L E S++Q GRA Sbjct 492 QGSFDVLVGVNLLREGLDLPEVSLVAIMDADKEGFLRAERSLIQTIGRA 540 >sp|P54475|CSHB_BACSU DEAD-box ATP-dependent RNA helicase CshB OS=Bacillus subtilis (strain 168) OX=224308 GN=cshB PE=1 SV=1 Length=438 Score = 41.6 bits (96), Expect = 0.022, Method: Compositional matrix adjust. Identities = 38/138 (28%), Positives = 60/138 (43%), Gaps = 19/138 (14%) Query 355 EKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH 414 +K+L S N GI+F T+ +A + AQ L G G H Sbjct 233 DKLLFDIMSHLNPYLGIVFANTKNTADHI----------------AQYLTGKGMKIGLLH 276 Query 415 --MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR- 471 +T R++++V+++ D ++AT +A G+DI + V+ Y L + V GR Sbjct 277 GGLTPRERKKVMKQINDLEFTYIIATDLAARGIDIKGVSHVINYELPDDLDFYVHRVGRT 336 Query 472 ARADQSVYAFVATEGSRE 489 ARA S A E + E Sbjct 337 ARAGSSGQAMTIYELTDE 354 >sp|Q0INC5|RH28_ORYSJ DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0481100 PE=2 SV=2 Length=802 Score = 42.0 bits (97), Expect = 0.022, Method: Compositional matrix adjust. Identities = 40/140 (29%), Positives = 66/140 (47%), Gaps = 16/140 (11%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 IIF+ T+ SAH L + GL ++A L G ++TQ + E ++ F+ Sbjct 443 IIFSGTKHSAHRLKIIF----GLS--GMKAAELHG--------NLTQAQRLEALELFKKQ 488 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFV-ATEGSR 488 ++ L+AT VA G+DI V+ + + + + GR ARA + YA T+ R Sbjct 489 EVDFLIATDVAARGIDIVGVRTVINFSCPRDARTYLHRVGRTARAGREGYAVTFVTDDDR 548 Query 489 ELKRELINEALETLMEQAVA 508 L + + +A L + VA Sbjct 549 SLLKAIAKKAGSQLKSRIVA 568 >sp|Q56998|UVRB_ZYMMO UvrABC system protein B OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) OX=264203 GN=uvrB PE=3 SV=2 Length=740 Score = 41.6 bits (96), Expect = 0.023, Method: Compositional matrix adjust. Identities = 20/56 (36%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + G ++L+ ++ EGLDIP C +V + G L +E S++Q GRA Sbjct 517 ELIRDLRLGVYDVLIGINLLREGLDIPECGLVAVLDADKEGFLRSETSLIQTIGRA 572 >sp|Q2TBP1|DDX25_BOVIN ATP-dependent RNA helicase DDX25 OS=Bos taurus OX=9913 GN=DDX25 PE=2 SV=1 Length=483 Score = 41.6 bits (96), Expect = 0.023, Method: Compositional matrix adjust. Identities = 26/94 (28%), Positives = 45/94 (48%), Gaps = 14/94 (15%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 + IIF +TR++A L + + Q G S S +T + +IQ+F+ Sbjct 340 QAIIFCQTRRNAKWLTVEMMQD--------------GHQVSLLSGELTVDQRASIIQRFR 385 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE 462 DG +L+ T+V G+D+ +VV + L N+ Sbjct 386 DGKEKVLITTNVCARGIDVKQVTIVVNFDLPVNQ 419 >sp|Q9LYJ9|RH46_ARATH DEAD-box ATP-dependent RNA helicase 46 OS=Arabidopsis thaliana OX=3702 GN=RH46 PE=2 SV=2 Length=645 Score = 41.6 bits (96), Expect = 0.023, Method: Compositional matrix adjust. Identities = 41/142 (29%), Positives = 64/142 (45%), Gaps = 21/142 (15%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K LE+IL+ Q S + IIF T++ L L + G + G+ Sbjct 392 KHSRLEQILRSQEPGS---KIIIFCSTKRMCDQLARNLTRTFGAAAIH---------GDK 439 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMV 466 SQ+ +RD +V+ +F+ G +LVAT VA GLD+ VVV Y + + + + Sbjct 440 SQA----ERD--DVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYDFPNGVEDYVHRI 493 Query 467 QARGRARADQSVYAFVATEGSR 488 GRA A Y F + ++ Sbjct 494 GRTGRAGATGLAYTFFGDQDAK 515 >sp|Q966L9|GLH2_CAEEL ATP-dependent RNA helicase glh-2 OS=Caenorhabditis elegans OX=6239 GN=glh-2 PE=1 SV=1 Length=974 Score = 42.0 bits (97), Expect = 0.023, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 35/55 (64%), Gaps = 0/55 (0%) Query 417 QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 QR++ E +++F++G+ +L+AT+VAE GLDI + V+ Y + N + GR Sbjct 853 QRERSEALRQFRNGSKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGR 907 >sp|Q2NQB2|RHLB_SODGM ATP-dependent RNA helicase RhlB OS=Sodalis glossinidius (strain morsitans) OX=343509 GN=rhlB PE=3 SV=1 Length=415 Score = 41.6 bits (96), Expect = 0.024, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 60/134 (45%), Gaps = 20/134 (15%) Query 346 PENP-KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI 404 P N K+ +L+ +++ ++ R IIF T+ + W L R LL Sbjct 238 PSNEEKMRLLQTLIEEEWPD----RCIIFANTKHRCEDI--WGH----LAADGHRVGLLT 287 Query 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 G ++Q+ + +++KF G L++LVAT VA GL IP V Y L + Sbjct 288 G--------DVSQKRRLRILEKFTQGALDILVATDVAARGLHIPSVTHVFNYDLPDDCED 339 Query 465 MVQARGR-ARADQS 477 V GR RA +S Sbjct 340 YVHRIGRTGRAGES 353 >sp|A8GZJ0|RHLB_SHEPA ATP-dependent RNA helicase RhlB OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) OX=398579 GN=rhlB PE=3 SV=1 Length=436 Score = 41.6 bits (96), Expect = 0.024, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 19/128 (15%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L +L+ + + I+F+ T+ S + WL+ RA LL G Sbjct 243 KMPLLLSLLEEDWPE----KAIVFSNTKHSCEKVWSWLEGDGH------RAGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q+ + ++++F G +++LVAT VA GL I + V Y L + V Sbjct 289 ----DVPQKKRLRILEQFTKGDIDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRI 344 Query 470 GR-ARADQ 476 GR RA Q Sbjct 345 GRTGRAGQ 352 >sp|Q55750|MFD_SYNY3 Transcription-repair-coupling factor OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa) OX=1111708 GN=mfd PE=3 SV=1 Length=1199 Score = 42.0 bits (97), Expect = 0.024, Method: Compositional matrix adjust. Identities = 46/187 (25%), Positives = 84/187 (45%), Gaps = 34/187 (18%) Query 400 AQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV----- 454 A++ IG G M + + + + F DG ++LV T++ E GLDIP N ++ Sbjct 882 ARIAIGHG------QMEESELESTMLAFNDGEADILVCTTIIEAGLDIPRVNTIIVEDAQ 935 Query 455 RYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM 513 ++GL + Q RGR R+ +A++ ++L + + A+Q+ Sbjct 936 KFGL----AQLYQLRGRVGRSGIQAHAWLLYPNQKQLTEK---------ARLRLRALQEF 982 Query 514 DQ--AEYQAKIRDLQQAALTK--RAAQAAQRENQRQQFPVEHVQLLCINCMVAVGHGSDL 569 Q + YQ RD++ + A Q+ Q E +F +E +Q + + + G ++ Sbjct 983 SQLGSGYQLATRDMEIRGVGNLLGAEQSGQMEAIGYEFYMEMLQ----DAIKEI-QGQEI 1037 Query 570 RKVEGTH 576 KVE T Sbjct 1038 PKVEDTQ 1044 >sp|Q6CT49|PRP28_KLULA Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=PRP28 PE=3 SV=1 Length=539 Score = 41.6 bits (96), Expect = 0.024, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 56/124 (45%), Gaps = 14/124 (11%) Query 349 PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN 408 P E KIL + F + IIF +++A WL + L+ RA L G+ + Sbjct 370 PDEEEKLKILVKDFLPNYKAPIIIFINYKRTAD----WLFDK--LREARFRATTLHGSKS 423 Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 Q H + ++G +++L+AT VA G+DIP+ ++VV + S V Sbjct 424 QEQREHS--------LSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHR 475 Query 469 RGRA 472 GR Sbjct 476 VGRT 479 >sp|Q0UY62|DBP3_PHANO ATP-dependent RNA helicase DBP3 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) OX=321614 GN=DBP3 PE=3 SV=1 Length=592 Score = 41.6 bits (96), Expect = 0.024, Method: Compositional matrix adjust. Identities = 37/121 (31%), Positives = 56/121 (46%), Gaps = 12/121 (10%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL-LTNE--ISMVQARGR 471 ++Q + + F++G + LLVAT VA GLDIP +V+ LT E + + GR Sbjct 462 LSQEKRSASLAAFKEGQVPLLVATDVAARGLDIPAVKLVINVTFPLTAEDYVHRIGRTGR 521 Query 472 ARADQSVYAFVATEGSRELKRELIN-------EALETLMEQAVAAVQKMDQAEYQAKIRD 524 A + F TE + L LIN E E L++ V+K + Y A +D Sbjct 522 AGKEGLAITFF-TEHDKGLSGSLINVLKAANQEVPEELLKFGT-TVKKKEHGAYGAFYKD 579 Query 525 L 525 + Sbjct 580 V 580 >sp|P46942|DB10_NICSY ATP-dependent RNA helicase-like protein DB10 OS=Nicotiana sylvestris OX=4096 PE=2 SV=1 Length=607 Score = 41.6 bits (96), Expect = 0.025, Method: Compositional matrix adjust. Identities = 25/76 (33%), Positives = 39/76 (51%), Gaps = 3/76 (4%) Query 416 TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT---NEISMVQARGRA 472 +Q ++ V+ +F+ G +LVAT VA GLDI VV+ Y T + + + GRA Sbjct 424 SQGERDYVLSQFRAGRSPVLVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRA 483 Query 473 RADQSVYAFVATEGSR 488 A Y F + + S+ Sbjct 484 GASGLAYTFFSDQDSK 499 >sp|Q7ZY47|DDX42_XENLA ATP-dependent RNA helicase DDX42 OS=Xenopus laevis OX=8355 GN=ddx42 PE=2 SV=1 Length=947 Score = 41.6 bits (96), Expect = 0.025, Method: Compositional matrix adjust. Identities = 24/69 (35%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR 473 M Q ++ +VI F+ ++ +LVAT VA GLDIP VV Y + + + GR R Sbjct 529 MDQSERNKVISDFKKKSIPVLVATDVAARGLDIPSIKTVVNYDVARDIDTHTHRIGRTGR 588 Query 474 ADQSVYAFV 482 A + A+ Sbjct 589 AGEKGVAYT 597 >sp|Q9BQ39|DDX50_HUMAN ATP-dependent RNA helicase DDX50 OS=Homo sapiens OX=9606 GN=DDX50 PE=1 SV=1 Length=737 Score = 41.6 bits (96), Expect = 0.025, Method: Compositional matrix adjust. Identities = 30/112 (27%), Positives = 53/112 (47%), Gaps = 15/112 (13%) Query 361 QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ 420 Q S + R IIF T+++ + + +Q AQ L G + Q + Sbjct 383 QVYSGSEGRAIIFCETKKNVTEMAMNPHIKQN-------AQCLHG--------DIAQSQR 427 Query 421 QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA 472 + ++ F++G+ +LVAT+VA GLDIP ++V++ + S + GR Sbjct 428 EITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRT 479 Score = 35.0 bits (79), Expect = 2.5, Method: Compositional matrix adjust. Identities = 34/133 (26%), Positives = 61/133 (46%), Gaps = 12/133 (9%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYV----AKRHLETVDGA---KVVVLVNRVHL 59 Q + P EGK++I TG GKT + A +R+ ET+ + KV+VL L Sbjct 164 QVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKKSRSPKVLVLAPTREL 223 Query 60 VTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 Q ++F+ + + +V G ++ H+ D+L+ T ++ L S Sbjct 224 ANQVAKDFKDITR-KLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSG----R 278 Query 120 VELTVFSLIVVDE 132 ++L+ +V+DE Sbjct 279 LDLSKLRHVVLDE 291 >sp|P24784|DBP1_YEAST ATP-dependent RNA helicase DBP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DBP1 PE=1 SV=2 Length=617 Score = 41.6 bits (96), Expect = 0.025, Method: Compositional matrix adjust. Identities = 35/133 (26%), Positives = 61/133 (46%), Gaps = 19/133 (14%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 +IF T++ A L +L Q + +A + G TQ +++ + F+ Sbjct 415 LIFVETKRMADQLTDFLIMQ------NFKATAIHG--------DRTQAERERALSAFKAN 460 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGRARADQSVYAFVATEGS 487 ++LVAT+VA GLDIP+ V+ Y L + + + + GRA +F + Sbjct 461 VADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVATSFFNSNNQ 520 Query 488 RELKR--ELINEA 498 +K E++NEA Sbjct 521 NIVKGLMEILNEA 533 >sp|P0CQ90|MAK5_CRYNJ ATP-dependent RNA helicase MAK5 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=MAK5 PE=3 SV=1 Length=772 Score = 41.6 bits (96), Expect = 0.025, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 37/70 (53%), Gaps = 1/70 (1%) Query 413 THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR- 471 +H+ Q+ + + + +F+ +L+AT VA GLDIP + VV + L + + GR Sbjct 516 SHLQQKQRLKNLDRFKSNPKGILIATDVAARGLDIPQVDHVVHFNLPRTADAYIHRSGRT 575 Query 472 ARADQSVYAF 481 ARA +A Sbjct 576 ARAQNEGFAL 585 >sp|B0TJ29|RHLB_SHEHH ATP-dependent RNA helicase RhlB OS=Shewanella halifaxensis (strain HAW-EB4) OX=458817 GN=rhlB PE=3 SV=1 Length=436 Score = 41.2 bits (95), Expect = 0.025, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 19/128 (15%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L +L+ + + I+F+ T+ S + WL+ RA LL G Sbjct 243 KMPLLLSLLEEDWPE----KAIVFSNTKHSCEKVWSWLEGDGH------RAGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q+ + ++++F G +++LVAT VA GL I + V Y L + V Sbjct 289 ----DVPQKKRLRILEQFTKGEIDILVATDVAARGLHIADVSHVYNYDLPDDCEDYVHRI 344 Query 470 GR-ARADQ 476 GR RA Q Sbjct 345 GRTGRAGQ 352 >sp|F4JFJ3|Y3206_ARATH ATP-dependent DNA helicase At3g02060, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g02060 PE=2 SV=1 Length=823 Score = 41.6 bits (96), Expect = 0.025, Method: Compositional matrix adjust. Identities = 21/68 (31%), Positives = 40/68 (59%), Gaps = 10/68 (15%) Query 421 QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGR-ARA 474 +E +++F G + +L+ T++ E GLDI + N ++ ++GL + Q RGR RA Sbjct 522 EETMERFAQGKIKILICTNIVESGLDIQNANTIIIQDVQQFGL----AQLYQLRGRVGRA 577 Query 475 DQSVYAFV 482 D+ +A++ Sbjct 578 DKEAHAYL 585 >sp|P0CQ91|MAK5_CRYNB ATP-dependent RNA helicase MAK5 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=MAK5 PE=3 SV=1 Length=772 Score = 41.6 bits (96), Expect = 0.026, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 37/70 (53%), Gaps = 1/70 (1%) Query 413 THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR- 471 +H+ Q+ + + + +F+ +L+AT VA GLDIP + VV + L + + GR Sbjct 516 SHLQQKQRLKNLDRFKSNPKGILIATDVAARGLDIPQVDHVVHFNLPRTADAYIHRSGRT 575 Query 472 ARADQSVYAF 481 ARA +A Sbjct 576 ARAQNEGFAL 585 >sp|A6ZWD3|DBP1_YEAS7 ATP-dependent RNA helicase DBP1 OS=Saccharomyces cerevisiae (strain YJM789) OX=307796 GN=DBP1 PE=3 SV=1 Length=617 Score = 41.6 bits (96), Expect = 0.026, Method: Compositional matrix adjust. Identities = 35/133 (26%), Positives = 61/133 (46%), Gaps = 19/133 (14%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 +IF T++ A L +L Q + +A + G TQ +++ + F+ Sbjct 415 LIFVETKRMADQLTDFLIMQ------NFKATAIHG--------DRTQAERERALSAFKAN 460 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGRARADQSVYAFVATEGS 487 ++LVAT+VA GLDIP+ V+ Y L + + + + GRA +F + Sbjct 461 VADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVATSFFNSNNQ 520 Query 488 RELKR--ELINEA 498 +K E++NEA Sbjct 521 NIVKGLMEILNEA 533 >sp|Q5QYF8|RHLB_IDILO ATP-dependent RNA helicase RhlB OS=Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR) OX=283942 GN=rhlB PE=3 SV=1 Length=425 Score = 41.2 bits (95), Expect = 0.027, Method: Compositional matrix adjust. Identities = 35/144 (24%), Positives = 59/144 (41%), Gaps = 22/144 (15%) Query 346 PENP-KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI 404 P P K +L +++ + + I+F T+ + WL + RA LL Sbjct 237 PSKPEKFPLLLTLIEEDWPD----KAIVFANTKHGCEKVHGWLVANEH------RAGLLT 286 Query 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTN 461 G + Q+ + +++ F +G L+ LVAT VA GL IP V + L + Sbjct 287 G--------DVPQKKRLRILEDFAEGKLDFLVATDVAARGLHIPEVTHVYNFDLPDDCED 338 Query 462 EISMVQARGRARADQSVYAFVATE 485 + + GRA A + + E Sbjct 339 YVHRIGRTGRAGASGAAISLACEE 362 >sp|A4QYM6|DRS1_PYRO7 ATP-dependent RNA helicase DRS1 OS=Pyricularia oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 GN=DRS1 PE=3 SV=1 Length=790 Score = 41.6 bits (96), Expect = 0.027, Method: Compositional matrix adjust. Identities = 41/160 (26%), Positives = 71/160 (44%), Gaps = 16/160 (10%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 R IIF R ++ AH + L+G + M+Q + + ++ F+ Sbjct 502 RVIIFFRQKKIAHHARIIFG--------------LLGLSCAELHGSMSQIQRIQSVEAFR 547 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEG 486 DG ++ L+AT +A GLDI + V+ Y + V GR ARA +S A +A E Sbjct 548 DGKVSFLLATDLASRGLDIKGVDTVINYEAPQSLEIYVHRVGRTARAGRSGTAITLAAEP 607 Query 487 SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQ 526 R++ + + + + + D +QAKI +L+ Sbjct 608 DRKVVKAAVKAGKAQGAKISSRIIDAADADSWQAKIDELE 647 >sp|A2QC74|DBP2_ASPNC ATP-dependent RNA helicase dbp2 OS=Aspergillus niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) OX=425011 GN=dbp2 PE=3 SV=1 Length=565 Score = 41.6 bits (96), Expect = 0.027, Method: Compositional matrix adjust. Identities = 37/150 (25%), Positives = 70/150 (47%), Gaps = 27/150 (18%) Query 351 LEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSS 410 ++ LEKI++ + + + +IFT T++ A + +L+Q G + Sbjct 373 IKHLEKIME-----NRANKCLIFTGTKRIADEITRFLRQD----------------GWPA 411 Query 411 QSTHMTQRDQQE--VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE---ISM 465 S H ++ Q+ V+ +F+ G ++VAT VA G+D+ V+ Y N + Sbjct 412 LSIHGDKQQQERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHR 471 Query 466 VQARGRARADQSVYAFVATEGSRELKRELI 495 + GRA A + F T+ S++ R+L+ Sbjct 472 IGRTGRAGAKGTAITFFTTDNSKQ-ARDLV 500 >sp|P39145|COMFA_BACSU ComF operon protein 1 OS=Bacillus subtilis (strain 168) OX=224308 GN=comFA PE=2 SV=1 Length=463 Score = 41.2 bits (95), Expect = 0.027, Method: Compositional matrix adjust. Identities = 22/74 (30%), Positives = 39/74 (53%), Gaps = 2/74 (3%) Query 400 AQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIP--HCNVVVRYG 457 A G + S H + ++E +Q+F+DG L+LL+ T++ E G+ +P V+ Sbjct 346 AACFKGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGVLGAES 405 Query 458 LLTNEISMVQARGR 471 + E ++VQ GR Sbjct 406 SIFTESALVQIAGR 419 >sp|A1D373|PRP5_NEOFI Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=prp5 PE=3 SV=1 Length=1193 Score = 41.6 bits (96), Expect = 0.028, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 74/174 (43%), Gaps = 25/174 (14%) Query 347 ENPKLEMLEKILQRQFS--SSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI 404 E+ K L +IL +S ++ R +IF +++A +LL L ++ Sbjct 787 EDTKFVRLLEILGNLYSDDANEDARALIFVDRQEAADTLLRELMRK-------------- 832 Query 405 GAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---L 459 G S H Q D+ I+ F+ G +L+ATSVA GLD+ +VV Y L Sbjct 833 --GYPCMSIHGGKDQIDRDSTIEDFKAGIFPILIATSVAARGLDVKQLKLVVNYDAPNHL 890 Query 460 TNEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM 513 + + GRA + F+ E +E I +AL ++ VQKM Sbjct 891 EDYVHRAGRTGRAGNTGTAVTFLTEE--QERYSVDIAKALRQSGQKVPEPVQKM 942 >sp|Q9NR30|DDX21_HUMAN Nucleolar RNA helicase 2 OS=Homo sapiens OX=9606 GN=DDX21 PE=1 SV=5 Length=783 Score = 41.6 bits (96), Expect = 0.028, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 19/110 (17%) Query 364 SSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQ 421 S + R IIF T++ A L Q I+ +QS H + Q+ ++ Sbjct 435 SGHQGRTIIFCETKKEAQELS---------QNSAIK--------QDAQSLHGDIPQKQRE 477 Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 ++ F++G+ +LVAT+VA GLDIP ++V++ + S + GR Sbjct 478 ITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGR 527 >sp|A2QIL2|PRP28_ASPNC Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Aspergillus niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) OX=425011 GN=prp28 PE=3 SV=1 Length=810 Score = 41.6 bits (96), Expect = 0.029, Method: Compositional matrix adjust. Identities = 32/107 (30%), Positives = 57/107 (53%), Gaps = 8/107 (7%) Query 407 GNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 G SS + H TQ ++ + ++GT ++LVAT +A G+D+P ++VV + + T+ S Sbjct 672 GFSSVTLHGSKTQDQREAALASVRNGTTDVLVATDLAGRGIDVPDVSLVVNFNMATSIES 731 Query 465 MVQARGR-ARADQSVYA--FVATEGSR---ELKRELINEALETLMEQ 505 GR RA +S A F+ E + +LK+ L+ + + E+ Sbjct 732 YTHRIGRTGRAGKSGVAITFLGNEDADVMYDLKQMLMKSPISRVPEE 778 >sp|P20703|UVSW_BPT4 ATP-dependent DNA helicase uvsW OS=Enterobacteria phage T4 OX=10665 GN=uvsW PE=1 SV=2 Length=587 Score = 41.2 bits (95), Expect = 0.029, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 18/144 (13%) Query 6 YQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 YQ + + L + I+ LPT AGK+ A +A+ +LE +G K++++V L TQ + Sbjct 117 YQKDAVFEGLVNRRRILNLPTSAGKSLIQALLARYYLENYEG-KILIIVPTTALTTQMAD 175 Query 66 EFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELL----QMALTSPEEEEHVE 121 +F +D R S M + G G A D A ++ Q + P+E Sbjct 176 DF---VDYR----LFSHAMIKKIGGG--ASKDDKYKNDAPVVVGTWQTVVKQPKE----W 222 Query 122 LTVFSLIVVDECHHTHKDTVYNVI 145 + F +++ DECH ++ ++I Sbjct 223 FSQFGMMMNDECHLATGKSISSII 246 >sp|B6EPA4|RHLB_ALISL ATP-dependent RNA helicase RhlB OS=Aliivibrio salmonicida (strain LFI1238) OX=316275 GN=rhlB PE=3 SV=1 Length=434 Score = 41.2 bits (95), Expect = 0.029, Method: Compositional matrix adjust. Identities = 35/129 (27%), Positives = 58/129 (45%), Gaps = 19/129 (15%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +++ ++ R IIF T+ L+W L R LL G Sbjct 243 KMALLQTLIEEEWPD----RAIIFANTKHKCE--LVWGH----LAADKHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q+ ++ ++++F G +++LVAT VA GL IP V + L V Sbjct 289 ----DVPQKKRERILEEFTKGEVDILVATDVAARGLHIPQVTHVFNFDLPNEAEDYVHRI 344 Query 470 GR-ARADQS 477 GR RA +S Sbjct 345 GRTGRAGES 353 >sp|Q4WT99|PRP5_ASPFU Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293) OX=330879 GN=prp5 PE=3 SV=1 Length=1211 Score = 41.6 bits (96), Expect = 0.029, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 74/174 (43%), Gaps = 25/174 (14%) Query 347 ENPKLEMLEKILQRQFS--SSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI 404 E+ K L +IL +S ++ R +IF +++A +LL L ++ Sbjct 805 EDTKFVRLLEILGNLYSDDANEDARALIFVDRQEAADTLLRELMRK-------------- 850 Query 405 GAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---L 459 G S H Q D+ I+ F+ G +L+ATSVA GLD+ +VV Y L Sbjct 851 --GYPCMSIHGGKDQIDRDSTIEDFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHL 908 Query 460 TNEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM 513 + + GRA + F+ E +E I +AL ++ VQKM Sbjct 909 EDYVHRAGRTGRAGNTGTAVTFLTEE--QERYSVDIAKALRQSGQKVPEPVQKM 960 >sp|A9IR19|UVRB_BORPD UvrABC system protein B OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) OX=340100 GN=uvrB PE=3 SV=1 Length=675 Score = 41.6 bits (96), Expect = 0.029, Method: Compositional matrix adjust. Identities = 21/56 (38%), Positives = 34/56 (61%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + GT ++LV ++ EGLDIP ++V + G L +E S++Q GRA Sbjct 495 EIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA 550 >sp|P0CQ98|PRP5_CRYNJ Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=PRP5 PE=3 SV=1 Length=1072 Score = 41.6 bits (96), Expect = 0.029, Method: Compositional matrix adjust. Identities = 23/75 (31%), Positives = 38/75 (51%), Gaps = 3/75 (4%) Query 417 QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGRAR 473 Q D+ E I+ F++G + ++VATSVA GLD+ +V+ Y + + + GRA Sbjct 692 QVDRDEAIKNFKNGDVPIIVATSVAARGLDVKELKLVINYDAPNHMEDYVHRAGRTGRAG 751 Query 474 ADQSVYAFVATEGSR 488 + F+ E R Sbjct 752 NKGTCITFITPEQER 766 >sp|P0CQ99|PRP5_CRYNB Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=PRP5 PE=3 SV=1 Length=1072 Score = 41.6 bits (96), Expect = 0.029, Method: Compositional matrix adjust. Identities = 23/75 (31%), Positives = 38/75 (51%), Gaps = 3/75 (4%) Query 417 QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGRAR 473 Q D+ E I+ F++G + ++VATSVA GLD+ +V+ Y + + + GRA Sbjct 692 QVDRDEAIKNFKNGDVPIIVATSVAARGLDVKELKLVINYDAPNHMEDYVHRAGRTGRAG 751 Query 474 ADQSVYAFVATEGSR 488 + F+ E R Sbjct 752 NKGTCITFITPEQER 766 >sp|Q2U070|DBP2_ASPOR ATP-dependent RNA helicase dbp2 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=dbp2 PE=3 SV=1 Length=554 Score = 41.2 bits (95), Expect = 0.030, Method: Compositional matrix adjust. Identities = 37/150 (25%), Positives = 70/150 (47%), Gaps = 27/150 (18%) Query 351 LEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSS 410 ++ LEKI++ + + + +IFT T++ A + +L+Q G + Sbjct 366 IKHLEKIMENRGN-----KCLIFTGTKRIADEITRFLRQD----------------GWPA 404 Query 411 QSTHMTQRDQQE--VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE---ISM 465 S H ++ Q+ V+ +F+ G ++VAT VA G+D+ V+ Y N + Sbjct 405 LSIHGDKQQQERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHR 464 Query 466 VQARGRARADQSVYAFVATEGSRELKRELI 495 + GRA A + F T+ S++ R+L+ Sbjct 465 IGRTGRAGAKGTAITFFTTDNSKQ-ARDLV 493 >sp|A9L5D5|RHLB_SHEB9 ATP-dependent RNA helicase RhlB OS=Shewanella baltica (strain OS195) OX=399599 GN=rhlB PE=3 SV=1 Length=438 Score = 41.2 bits (95), Expect = 0.030, Method: Compositional matrix adjust. Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 20/106 (19%) Query 369 RGIIFTRTRQSAHSLLLWLQ---QQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQ 425 + I+F+ T+ S +L WL+ + GL T D+ Q+ + +++ Sbjct 258 KAIVFSNTKHSCETLWSWLEGDGHRVGLLTGDV-----------------PQKKRIRILE 300 Query 426 KFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 +F G L++LVAT VA GL I + V Y L + V GR Sbjct 301 QFTSGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGR 346 >sp|A6WTD3|RHLB_SHEB8 ATP-dependent RNA helicase RhlB OS=Shewanella baltica (strain OS185) OX=402882 GN=rhlB PE=3 SV=1 Length=438 Score = 41.2 bits (95), Expect = 0.030, Method: Compositional matrix adjust. Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 20/106 (19%) Query 369 RGIIFTRTRQSAHSLLLWLQ---QQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQ 425 + I+F+ T+ S +L WL+ + GL T D+ Q+ + +++ Sbjct 258 KAIVFSNTKHSCETLWSWLEGDGHRVGLLTGDV-----------------PQKKRIRILE 300 Query 426 KFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 +F G L++LVAT VA GL I + V Y L + V GR Sbjct 301 QFTSGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGR 346 >sp|Q5F485|DDX42_CHICK ATP-dependent RNA helicase DDX42 OS=Gallus gallus OX=9031 GN=DDX42 PE=2 SV=1 Length=944 Score = 41.6 bits (96), Expect = 0.030, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 17/123 (14%) Query 361 QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ 420 +F+SS S ++F + +A L L+Q+ D LL G M Q ++ Sbjct 494 EFTSSGSV--LLFVTKKANAEELANNLKQE------DHNLGLLHG--------DMDQSER 537 Query 421 QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVY 479 +VI +F+ + +LVAT VA GLDIP V+ Y + + + GR RA + Sbjct 538 NKVISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGV 597 Query 480 AFV 482 A+ Sbjct 598 AYT 600 >sp|Q62095|DDX3Y_MOUSE ATP-dependent RNA helicase DDX3Y OS=Mus musculus OX=10090 GN=Ddx3y PE=1 SV=2 Length=658 Score = 41.2 bits (95), Expect = 0.030, Method: Compositional matrix adjust. Identities = 29/101 (29%), Positives = 50/101 (50%), Gaps = 14/101 (14%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 ++F T++ A SL +L Q++ T S +Q+D++E + +F+ G Sbjct 444 LVFVETKKGADSLENFLFQERYACT--------------SIHGDRSQKDREEALHQFRSG 489 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 +LVAT+VA GLDI + V+ + L ++ V GR Sbjct 490 RKPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGR 530 >sp|A2C5S6|UVRB_PROM3 UvrABC system protein B OS=Prochlorococcus marinus (strain MIT 9303) OX=59922 GN=uvrB PE=3 SV=1 Length=679 Score = 41.2 bits (95), Expect = 0.031, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 53/109 (49%), Gaps = 19/109 (17%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 R +I T T++ A L +L + D+R + L H +R E+IQ + Sbjct 446 RVLITTLTKRMAEDLTDYLAEN------DVRVRYL------HSEIHSIER--IEIIQDLR 491 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 G ++LV ++ EGLD+P ++VV + G L E S++Q GRA Sbjct 492 LGEYDVLVGVNLLREGLDLPEVSLVVILDADKEGFLRAERSLIQTIGRA 540 >sp|P38719|DBP8_YEAST ATP-dependent RNA helicase DBP8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DBP8 PE=1 SV=1 Length=431 Score = 41.2 bits (95), Expect = 0.031, Method: Compositional matrix adjust. Identities = 22/67 (33%), Positives = 37/67 (55%), Gaps = 1/67 (1%) Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 +S + M Q+++ + +F+ +L+AT VA GLDIP +VV Y + ++ + Sbjct 282 ASLHSQMPQQERTNSLHRFRANAARILIATDVASRGLDIPTVELVVNYDIPSDPDVFIHR 341 Query 469 RGR-ARA 474 GR ARA Sbjct 342 SGRTARA 348 >sp|A6ZT77|DBP8_YEAS7 ATP-dependent RNA helicase DBP8 OS=Saccharomyces cerevisiae (strain YJM789) OX=307796 GN=DBP8 PE=3 SV=1 Length=431 Score = 41.2 bits (95), Expect = 0.031, Method: Compositional matrix adjust. Identities = 22/67 (33%), Positives = 37/67 (55%), Gaps = 1/67 (1%) Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 +S + M Q+++ + +F+ +L+AT VA GLDIP +VV Y + ++ + Sbjct 282 ASLHSQMPQQERTNSLHRFRANAARILIATDVASRGLDIPTVELVVNYDIPSDPDVFIHR 341 Query 469 RGR-ARA 474 GR ARA Sbjct 342 SGRTARA 348 >sp|A3D9I5|RHLB_SHEB5 ATP-dependent RNA helicase RhlB OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) OX=325240 GN=rhlB PE=3 SV=1 Length=438 Score = 41.2 bits (95), Expect = 0.031, Method: Compositional matrix adjust. Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 20/93 (22%) Query 369 RGIIFTRTRQSAHSLLLWLQ---QQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQ 425 + I+F+ T+ S +L WL+ + GL T D+ Q+ + +++ Sbjct 258 KAIVFSNTKHSCETLWSWLEGDGHRVGLLTGDV-----------------PQKKRIRILE 300 Query 426 KFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL 458 +F G L++LVAT VA GL I + V Y L Sbjct 301 QFTSGQLDILVATDVAARGLHISDVSHVYNYDL 333 >sp|B8E670|RHLB_SHEB2 ATP-dependent RNA helicase RhlB OS=Shewanella baltica (strain OS223) OX=407976 GN=rhlB PE=3 SV=1 Length=438 Score = 41.2 bits (95), Expect = 0.031, Method: Compositional matrix adjust. Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 20/93 (22%) Query 369 RGIIFTRTRQSAHSLLLWLQ---QQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQ 425 + I+F+ T+ S +L WL+ + GL T D+ Q+ + +++ Sbjct 258 KAIVFSNTKHSCETLWSWLEGDGHRVGLLTGDV-----------------PQKKRIRILE 300 Query 426 KFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL 458 +F G L++LVAT VA GL I + V Y L Sbjct 301 QFTSGQLDILVATDVAARGLHISDVSHVYNYDL 333 >sp|Q58083|H669_METJA Probable ATP-dependent RNA helicase MJ0669 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ0669 PE=1 SV=1 Length=367 Score = 40.8 bits (94), Expect = 0.031, Method: Compositional matrix adjust. Identities = 38/150 (25%), Positives = 70/150 (47%), Gaps = 27/150 (18%) Query 347 ENPKLEMLEKILQ-RQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 EN + E L ++L+ ++F G++F +T++ L A +L Sbjct 223 ENERFEALCRLLKNKEFY------GLVFCKTKRDTKEL----------------ASMLRD 260 Query 406 AGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI 463 G + + H ++Q +++VI+ F+ + +L+AT V G+D+ N V+ Y L N Sbjct 261 IGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPE 320 Query 464 SMVQARGR-ARADQSVYAFVATEGSRELKR 492 S + GR RA + A ++ RE K+ Sbjct 321 SYMHRIGRTGRAGKKGKA-ISIINRREYKK 349 >sp|A1CKJ0|DBP8_ASPCL ATP-dependent RNA helicase dbp8 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=dbp8 PE=3 SV=1 Length=523 Score = 41.2 bits (95), Expect = 0.031, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 45/87 (52%), Gaps = 3/87 (3%) Query 394 QTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN 451 +T D+ ++L + S H + Q ++ + +F+ +LVAT VA GLDIP + Sbjct 359 KTADLLERMLRRLSHRVTSLHSLLPQSERNANLARFRASAARILVATDVASRGLDIPSVS 418 Query 452 VVVRYGLLTNEISMVQARGR-ARADQS 477 +VV Y + N V GR ARA +S Sbjct 419 LVVNYDVPRNPDDYVHRVGRTARAGRS 445 >sp|Q7TV80|UVRB_PROMM UvrABC system protein B OS=Prochlorococcus marinus (strain MIT 9313) OX=74547 GN=uvrB PE=3 SV=1 Length=679 Score = 41.2 bits (95), Expect = 0.032, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 53/109 (49%), Gaps = 19/109 (17%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 R +I T T++ A L +L + D+R + L H +R E+IQ + Sbjct 446 RVLITTLTKRMAEDLTDYLAEN------DVRVRYL------HSEIHSIER--IEIIQDLR 491 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 G ++LV ++ EGLD+P ++VV + G L E S++Q GRA Sbjct 492 LGEYDVLVGVNLLREGLDLPEVSLVVILDADKEGFLRAERSLIQTIGRA 540 >sp|Q49Z29|CSHA_STAS1 DEAD-box ATP-dependent RNA helicase CshA OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41) OX=342451 GN=cshA PE=3 SV=1 Length=506 Score = 41.2 bits (95), Expect = 0.032, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 41/79 (52%), Gaps = 2/79 (3%) Query 396 VDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV 453 VD LI G ++ H +TQ + EV++KF++ L++LVAT VA GLDI + V Sbjct 253 VDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQLDILVATDVAARGLDISGVSHV 312 Query 454 VRYGLLTNEISMVQARGRA 472 + + + S GR Sbjct 313 YNFDIPQDTESYTHRIGRT 331 >sp|A6RUH2|DRS1_BOTFB ATP-dependent RNA helicase drs1 OS=Botryotinia fuckeliana (strain B05.10) OX=332648 GN=drs1 PE=3 SV=1 Length=801 Score = 41.2 bits (95), Expect = 0.032, Method: Compositional matrix adjust. Identities = 26/91 (29%), Positives = 45/91 (49%), Gaps = 20/91 (22%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG-AGNSSQSTH--MTQRDQQEVIQ 425 R I+F R ++ AH RA+++ G +G + H M+Q + + ++ Sbjct 515 RVIVFFRQKKEAH-----------------RARIIFGLSGLKATELHGSMSQEQRIKSVE 557 Query 426 KFQDGTLNLLVATSVAEEGLDIPHCNVVVRY 456 F+DG + L+AT +A GLDI + V+ Y Sbjct 558 AFRDGKASFLLATDLASRGLDIKGVDTVINY 588 >sp|A6QSQ0|FAL1_AJECN ATP-dependent RNA helicase FAL1 OS=Ajellomyces capsulatus (strain NAm1 / WU24) OX=2059318 GN=FAL1 PE=3 SV=1 Length=450 Score = 41.2 bits (95), Expect = 0.033, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 3/86 (3%) Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 SS M Q+++ ++Q F+ G +L++T V G+D+ ++V+ Y L +N + + Sbjct 292 SSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHR 351 Query 469 RGRA-RADQSVYA--FVATEGSRELK 491 GR+ R + A FV +E R L+ Sbjct 352 IGRSGRFGRKGVAINFVTSEDVRILR 377 >sp|Q75F95|DRS1_EREGS ATP-dependent RNA helicase DRS1 OS=Eremothecium gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=DRS1 PE=3 SV=1 Length=734 Score = 41.2 bits (95), Expect = 0.033, Method: Compositional matrix adjust. Identities = 36/146 (25%), Positives = 66/146 (45%), Gaps = 16/146 (11%) Query 358 LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ 417 L R+ S+ R ++F ++ AH L + L L+G +TQ Sbjct 458 LLRKLDSTGQKRIVVFVARKEVAHRLRVILG--------------LLGMKAGELHGSLTQ 503 Query 418 RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL-LTNEISMVQARGRARADQ 476 + + + F+ + +LV T +A GLDIP VV+ Y + T EI + + ARA + Sbjct 504 EQRLQSVNNFKSLDVPVLVCTDLASRGLDIPKIEVVINYDMPKTYEIYLHRVGRTARAGR 563 Query 477 SVYAFVATEGSRELKRELINEALETL 502 + V G +R ++ +A++++ Sbjct 564 EGKS-VTLVGESTQERSIVKDAIKSV 588 >sp|P33919|RADD_ECOLI Putative DNA repair helicase RadD OS=Escherichia coli (strain K12) OX=83333 GN=radD PE=1 SV=2 Length=586 Score = 41.2 bits (95), Expect = 0.033, Method: Compositional matrix adjust. Identities = 48/175 (27%), Positives = 78/175 (45%), Gaps = 33/175 (19%) Query 3 LRSYQWEVIMPALE-----GKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRV 57 LR YQ E + L +I LPTGAGK+ A +A+ + +V+VL + Sbjct 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELAR-----LARGRVLVLAHVK 59 Query 58 HLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE 117 LV Q+ +++ + L D+ AG ++ + + + L + + E Sbjct 60 ELVAQNHAKYQAL--------GLEADIFA-AGLKRKESHGKVVFGSVQSVARNLDAFQGE 110 Query 118 EHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLEL--KLQRAQPLPQVLGLTASP 170 FSL++VDECH D SQY ++ L + P ++LGLTA+P Sbjct 111 -------FSLLIVDECHRIGDDE-----ESQYQQILTHLTKVNPHLRLLGLTATP 153 >sp|A7F4L5|DRS1_SCLS1 ATP-dependent RNA helicase drs1 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 GN=drs1 PE=3 SV=1 Length=801 Score = 41.2 bits (95), Expect = 0.033, Method: Compositional matrix adjust. Identities = 26/91 (29%), Positives = 45/91 (49%), Gaps = 20/91 (22%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG-AGNSSQSTH--MTQRDQQEVIQ 425 R I+F R ++ AH RA+++ G +G + H M+Q + + ++ Sbjct 515 RVIVFFRQKKEAH-----------------RARIIFGLSGLKATELHGSMSQEQRIKSVE 557 Query 426 KFQDGTLNLLVATSVAEEGLDIPHCNVVVRY 456 F+DG + L+AT +A GLDI + V+ Y Sbjct 558 AFRDGKASFLLATDLASRGLDIKGVDTVINY 588 >sp|A5E1W4|DBP3_LODEL ATP-dependent RNA helicase DBP3 OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) OX=379508 GN=DBP3 PE=3 SV=2 Length=535 Score = 41.2 bits (95), Expect = 0.034, Method: Compositional matrix adjust. Identities = 29/84 (35%), Positives = 41/84 (49%), Gaps = 2/84 (2%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR 473 ++Q+ + + +Q F+ G NLL+AT VA GLDIP+ V+ V GR R Sbjct 408 LSQQQRTQALQSFKSGECNLLLATDVAARGLDIPNVKYVINLTFPLTIEDYVHRLGRTGR 467 Query 474 ADQSVYAFV-ATEGSRELKRELIN 496 A Q+ A TE + L L N Sbjct 468 AGQTGIAHTFFTEDEKHLSGALCN 491 >sp|A1RFB3|RHLB_SHESW ATP-dependent RNA helicase RhlB OS=Shewanella sp. (strain W3-18-1) OX=351745 GN=rhlB PE=3 SV=1 Length=439 Score = 40.8 bits (94), Expect = 0.034, Method: Compositional matrix adjust. Identities = 48/188 (26%), Positives = 78/188 (41%), Gaps = 29/188 (15%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 + I+F+ T+ S +L WL+ R LL G + Q+ + ++++F Sbjct 258 KAIVFSNTKHSCENLWSWLEGDGH------RVGLLTG--------DVPQKKRIRILEQFT 303 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGRARADQSVYAFVATE 485 G L++LVAT VA GL I + V Y L + + + GRA +F E Sbjct 304 SGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSISFACEE 363 Query 486 GSRELK--RELINEAL-------ETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQ 536 + L IN ++ L+E A V+ ++ A R+L++ A R Q Sbjct 364 YALNLPAIESYINHSIPVSNYDSSALLEDIPAPVKI--PRKHPAGTRNLRERAGAGR-PQ 420 Query 537 AAQRENQR 544 A R R Sbjct 421 GAHRSGGR 428 >sp|A4YB09|RHLB_SHEPC ATP-dependent RNA helicase RhlB OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) OX=319224 GN=rhlB PE=3 SV=1 Length=439 Score = 40.8 bits (94), Expect = 0.034, Method: Compositional matrix adjust. Identities = 48/188 (26%), Positives = 78/188 (41%), Gaps = 29/188 (15%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 + I+F+ T+ S +L WL+ R LL G + Q+ + ++++F Sbjct 258 KAIVFSNTKHSCENLWSWLEGDGH------RVGLLTG--------DVPQKKRIRILEQFT 303 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGRARADQSVYAFVATE 485 G L++LVAT VA GL I + V Y L + + + GRA +F E Sbjct 304 SGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSISFACEE 363 Query 486 GSRELK--RELINEAL-------ETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQ 536 + L IN ++ L+E A V+ ++ A R+L++ A R Q Sbjct 364 YALNLPAIESYINHSIPVSNYDSSALLEDIPAPVKI--PRKHPAGTRNLRERAGAGR-PQ 420 Query 537 AAQRENQR 544 A R R Sbjct 421 GAHRSGGR 428 >sp|Q12S35|RHLB_SHEDO ATP-dependent RNA helicase RhlB OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) OX=318161 GN=rhlB PE=3 SV=1 Length=432 Score = 40.8 bits (94), Expect = 0.034, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 43/90 (48%), Gaps = 14/90 (16%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 + I+F+ T+ S +L WL+ R LL G + Q+ + ++++F Sbjct 258 KAIVFSNTKHSCENLWSWLEGDGH------RVGLLTG--------DVPQKKRIRILEQFT 303 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGL 458 G L++LVAT VA GL I + V Y L Sbjct 304 SGDLDVLVATDVAARGLHISDVSHVYNYDL 333 >sp|Q6LLL5|RHLB_PHOPR ATP-dependent RNA helicase RhlB OS=Photobacterium profundum (strain SS9) OX=298386 GN=rhlB PE=3 SV=1 Length=437 Score = 40.8 bits (94), Expect = 0.034, Method: Compositional matrix adjust. Identities = 40/161 (25%), Positives = 69/161 (43%), Gaps = 27/161 (17%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +++ ++ R IIF T+ + W L + R LL G Sbjct 243 KMRLLQTLIEEEWPD----RAIIFANTKHRCEDI--WGH----LAADNHRVGLLNG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE---ISMV 466 + Q+ + ++++F G +++LVAT VA GL IP V Y L + + + Sbjct 289 ----DVPQKKRVRILEQFTQGDIDILVATDVAARGLHIPQVTHVYNYDLPDDAEDYVHRI 344 Query 467 QARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAV 507 GRA S +F E + L A+ET +E + Sbjct 345 GRTGRAGESGSSISFACEEYAINLP------AIETYIEHPI 379 >sp|Q9Y6V7|DDX49_HUMAN Probable ATP-dependent RNA helicase DDX49 OS=Homo sapiens OX=9606 GN=DDX49 PE=1 SV=1 Length=483 Score = 40.8 bits (94), Expect = 0.035, Method: Compositional matrix adjust. Identities = 40/164 (24%), Positives = 67/164 (41%), Gaps = 29/164 (18%) Query 293 IHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLE 352 + DT+R + LA Q F+ + + ++R L + PE K Sbjct 189 LTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLV---------------PEKVKDA 233 Query 353 MLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQS 412 L ++QR IIFT T ++ L + L++ TV + + Sbjct 234 YLVHLIQRFQDEHEDWSIIIFTNTCKTCQILCMMLRKF-SFPTVALHSM----------- 281 Query 413 THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY 456 M Q+++ + KF+ +L+AT VA GLDIP VV+ + Sbjct 282 --MKQKERFAALAKFKSSIYRILIATDVASRGLDIPTVQVVINH 323 >sp|Q54QS3|DDX3_DICDI Probable ATP-dependent RNA helicase ddx3 OS=Dictyostelium discoideum OX=44689 GN=ddx3 PE=3 SV=1 Length=712 Score = 41.2 bits (95), Expect = 0.035, Method: Compositional matrix adjust. Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 14/102 (14%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 +IF T++S +L +L Q+ T I L TQ +++ +Q F+ Sbjct 508 LIFVETKRSCDTLTYFLNQRN-FPTTCIHGDL-------------TQPERENALQSFRSF 553 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA 472 LVAT +A GL I + N+V+ + L T+ V GR Sbjct 554 ATPFLVATDIASRGLHIGNVNLVINFDLPTDIHIYVHRIGRT 595 >sp|Q6CDN5|DBP6_YARLI ATP-dependent RNA helicase DBP6 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DBP6 PE=3 SV=1 Length=607 Score = 41.2 bits (95), Expect = 0.035, Method: Compositional matrix adjust. Identities = 51/200 (26%), Positives = 91/200 (46%), Gaps = 28/200 (14%) Query 338 LAHLATH--GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQT 395 L + TH E P L + E ++QR + RG++FT++ ++A + ++ + Sbjct 426 LTEIVTHVSAAEKP-LMLCELLVQRDIN-----RGVVFTKSSETAARVARMME----IMD 475 Query 396 VDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVR 455 DI + A S++++ + +R +++F DG ++ LV T + G+D N V+ Sbjct 476 ADIFHKDWKIAAVSAETSSVHRR---RSMKQFIDGKIDFLVCTDLVSRGIDFVVDN-VIN 531 Query 456 YGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELK--RELINEALETLMEQAVAAVQK 512 Y + + + V GR ARA + A+ GS E K RE+ + V Q+ Sbjct 532 YDIPSGKREYVHRVGRTARAGREGNAYTFLTGSGEAKWFREI---------GEFVGRTQE 582 Query 513 MDQAEYQAKIRDLQQAALTK 532 +D + D Q AL K Sbjct 583 VDATHINSSHNDGYQEALAK 602 >sp|Q9HGM5|DBP8_SCHPO ATP-dependent RNA helicase dbp8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=dbp8 PE=3 SV=1 Length=453 Score = 40.8 bits (94), Expect = 0.035, Method: Compositional matrix adjust. Identities = 23/66 (35%), Positives = 36/66 (55%), Gaps = 1/66 (2%) Query 413 THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR- 471 + M QR++ + +F+ +LVAT VA GLDIP +V+ + L + + GR Sbjct 290 SEMVQRERINSLGRFRAEAAKILVATDVASRGLDIPSVQLVINFDLPRDPDDYIHRVGRT 349 Query 472 ARADQS 477 ARA +S Sbjct 350 ARAGRS 355 >sp|Q5ACK7|DRS1_CANAL ATP-dependent RNA helicase DRS1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DRS1 PE=3 SV=1 Length=613 Score = 41.2 bits (95), Expect = 0.036, Method: Compositional matrix adjust. Identities = 47/184 (26%), Positives = 83/184 (45%), Gaps = 22/184 (12%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K + L+ L Q S R ++F +++AH L + L L+G S Sbjct 356 KRDQLKPALLYQLLKGVSSRVVVFVARKETAHRLRIVLG--------------LLGLKVS 401 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL-LTNEISM--V 466 +TQ + + ++ F+ + +L+ T +A GLDIP +V+ Y + T EI + V Sbjct 402 ELHGALTQEQRLQNVKNFKSLEVPVLICTDLAARGLDIPKIELVINYDMPKTFEIYLHRV 461 Query 467 QARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQ 526 RA D + FV E S+E R ++ A+ + + VA QAE K+ + + Sbjct 462 GRTARAGRDGTSITFVG-ESSQE--RAIVKSAI--VNGKGVAKTVDWKQAEETNKLLESK 516 Query 527 QAAL 530 ++ + Sbjct 517 ESVI 520 >sp|Q55170|UVRB_SYNY3 UvrABC system protein B OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa) OX=1111708 GN=uvrB PE=3 SV=1 Length=669 Score = 41.2 bits (95), Expect = 0.036, Method: Compositional matrix adjust. Identities = 19/56 (34%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E++Q +DG ++L+ ++ EGLD+P ++V + G L E S++Q GRA Sbjct 487 EILQALRDGEFDVLIGVNLLREGLDLPEVSLVAIMDADKEGFLRAERSLIQTIGRA 542 >sp|Q54KG1|DDX41_DICDI Probable ATP-dependent RNA helicase ddx41 OS=Dictyostelium discoideum OX=44689 GN=ddx41 PE=1 SV=1 Length=671 Score = 41.2 bits (95), Expect = 0.036, Method: Compositional matrix adjust. Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 3/112 (3%) Query 416 TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGRA 472 +Q +++ I+ F++G ++LVAT VA +GLD P V+ + + + N I + GR Sbjct 509 SQDERESAIKAFREGKKDVLVATDVASKGLDFPEIQHVINFDMPREIENYIHRIGRTGRR 568 Query 473 RADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD 524 F+ + L +L +E + A ++ D +Y K++D Sbjct 569 GNKGVATTFINKNNTESLLLDLKYLLIEAKQKVPPALLEIPDDNQYLQKLQD 620 >sp|Q9AKD5|MFD_RICTY Transcription-repair-coupling factor OS=Rickettsia typhi (strain ATCC VR-144 / Wilmington) OX=257363 GN=mfd PE=3 SV=1 Length=1120 Score = 41.2 bits (95), Expect = 0.036, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 42/78 (54%), Gaps = 2/78 (3%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS-MVQARGR-A 472 MT EV+ +F G ++L++T++ E G+DI N ++ + T +S + Q RGR Sbjct 825 MTPSKIDEVMSEFYAGKFDILISTTIIESGIDITEANTMIIHNADTLGLSQLYQLRGRIG 884 Query 473 RADQSVYAFVATEGSREL 490 R YA++ +++L Sbjct 885 RGKIRGYAYLTVASNKKL 902 >sp|Q1DTB3|FAL1_COCIM ATP-dependent RNA helicase FAL1 OS=Coccidioides immitis (strain RS) OX=246410 GN=FAL1 PE=3 SV=2 Length=399 Score = 40.8 bits (94), Expect = 0.037, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 3/86 (3%) Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 SS M Q+++ ++Q F+ G +L++T V G+D+ ++V+ Y L +N + + Sbjct 292 SSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHR 351 Query 469 RGRA-RADQSVYA--FVATEGSRELK 491 GR+ R + A FV +E R L+ Sbjct 352 IGRSGRFGRKGVAINFVTSEDVRILR 377 >sp|Q5BCU6|PRP28_EMENI Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=prp28 PE=3 SV=2 Length=782 Score = 41.2 bits (95), Expect = 0.038, Method: Compositional matrix adjust. Identities = 31/107 (29%), Positives = 57/107 (53%), Gaps = 8/107 (7%) Query 407 GNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 G SS + H TQ ++ + ++G+ ++LVAT +A G+D+P ++V+ + + T+ S Sbjct 645 GFSSVTLHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVINFNMATSIES 704 Query 465 MVQARGR-ARADQSVYA--FVATEGSR---ELKRELINEALETLMEQ 505 GR RA +S A F+ E + +LK+ LI + + E+ Sbjct 705 YTHRIGRTGRAGKSGVAITFLGNEDADVMYDLKQMLIKSPISRVPEE 751 >sp|Q9SA27|RH36_ARATH DEAD-box ATP-dependent RNA helicase 36 OS=Arabidopsis thaliana OX=3702 GN=RH36 PE=2 SV=1 Length=491 Score = 40.8 bits (94), Expect = 0.038, Method: Compositional matrix adjust. Identities = 36/147 (24%), Positives = 69/147 (47%), Gaps = 19/147 (13%) Query 424 IQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF- 481 + KF+ G + +L+AT VA GLDIP ++V+ Y + + V GR ARA + A Sbjct 345 LSKFKSGKVPILLATDVASRGLDIPTVDLVINYDIPRDPRDYVHRVGRTARAGRGGLAVS 404 Query 482 VATEGSREL---------------KRELINEALET--LMEQAVAAVQKMDQAEYQAKIRD 524 + TE +L +++I ++LE + + A+ KM ++ K++D Sbjct 405 IITETDVKLIHKIEEEVGKKMEPYNKKVITDSLEVTKVSKAKRVAMMKMLDNGFEDKVKD 464 Query 525 LQQAALTKRAAQAAQRENQRQQFPVEH 551 ++ A + ++ ++Q E+ Sbjct 465 RRKLKRKTLADKGLLKKRGKRQKSTEN 491 >sp|A5E6W6|RRP3_LODEL ATP-dependent rRNA helicase RRP3 OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) OX=379508 GN=RRP3 PE=3 SV=1 Length=504 Score = 40.8 bits (94), Expect = 0.038, Method: Compositional matrix adjust. Identities = 32/90 (36%), Positives = 42/90 (47%), Gaps = 15/90 (17%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 R IIFTRT L L G + V++ Q M Q + I KF+ Sbjct 339 RVIIFTRTVVHTRRCCLMLLNL-GFKCVELHGQ-------------MPQSRRLGAINKFK 384 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGL 458 GT +LVAT VA GLDIP ++V+ Y + Sbjct 385 AGT-PILVATDVAARGLDIPAVDLVINYDI 413 >sp|Q59MW2|DBP6_CANAL ATP-dependent RNA helicase DBP6 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DBP6 PE=3 SV=2 Length=606 Score = 40.8 bits (94), Expect = 0.039, Method: Compositional matrix adjust. Identities = 44/183 (24%), Positives = 83/183 (45%), Gaps = 18/183 (10%) Query 357 ILQRQFSSSNSPRGI-IFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL-LIGAGNSSQSTH 414 IL + S+N + IFT++ +S+ L L Q + I ++ I + N+ S Sbjct 430 ILTKFLISTNKLSNVLIFTKSNESSIRLTELLTSL--FQKLSINLKIAFINSTNNRTSI- 486 Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR 473 + +++++F + +N+L+ T + G+D+ V+ Y L + V GR AR Sbjct 487 -----RSKILKQFSNQEVNILITTDLIARGIDVASITDVINYDLPNSSREYVHRVGRTAR 541 Query 474 ADQ--SVYAFVATEGSRELKRELINEA-----LETLMEQAVAAVQKMDQAEYQAKIRDLQ 526 A+Q Y+F +G ++L +E +E + + D+ YQ + +LQ Sbjct 542 ANQVGYAYSFCFGKGENSWFKKLAHEVSRSKEVENVDLNVKELISDRDEEIYQQALHELQ 601 Query 527 QAA 529 Q A Sbjct 602 QQA 604 >sp|A5E726|DBP6_LODEL ATP-dependent RNA helicase DBP6 OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) OX=379508 GN=DBP6 PE=3 SV=1 Length=663 Score = 40.8 bits (94), Expect = 0.039, Method: Compositional matrix adjust. Identities = 43/168 (26%), Positives = 81/168 (48%), Gaps = 21/168 (13%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN-SSQSTHMTQRDQQEVIQKFQD 429 ++FT++ +S+ L LQ + ++ ++ +G N ++ T + + ++++ F Sbjct 500 LVFTKSNESSIRLCTLLQAI--FDRICLQEKVKVGFMNLTNNRTSL----RSKILKDFTS 553 Query 430 GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQS--VYAFVATEG 486 +N+LVAT + GLD+ VV Y LL + V GR ARA+Q+ Y V +G Sbjct 554 QKINILVATDLIARGLDVTSIKDVVNYDLLNSSREYVHRVGRTARANQAGNAYNLVFGKG 613 Query 487 --------SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQ 526 S E+ R + +E ++Q ++ D+ YQ ++ LQ Sbjct 614 EEKWFKTISSEVSRNNDVKDVEVNLKQLIS---DEDEKLYQEALQSLQ 658 >sp|Q8W4R3|RH30_ARATH DEAD-box ATP-dependent RNA helicase 30 OS=Arabidopsis thaliana OX=3702 GN=RH30 PE=1 SV=2 Length=591 Score = 40.8 bits (94), Expect = 0.040, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 4/83 (5%) Query 416 TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGRA 472 TQ ++ V+ +F+ G ++ AT VA GLD+ VV Y L + I + GRA Sbjct 445 TQSERDRVLAEFKSGRSPIMTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRA 504 Query 473 RADQSVYAFVATEGSRELKRELI 495 A + F T + + REL+ Sbjct 505 GAKGMAFTFF-THDNAKFARELV 526 >sp|A0PYA5|UVRB_CLONN UvrABC system protein B OS=Clostridium novyi (strain NT) OX=386415 GN=uvrB PE=3 SV=1 Length=657 Score = 40.8 bits (94), Expect = 0.040, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 33/58 (57%), Gaps = 5/58 (9%) Query 420 QQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 + E+I+ + G ++LV ++ EGLDIP +V + G L +E S+VQ GRA Sbjct 483 RMEIIRDLRKGKFDVLVGINLLREGLDIPEVALVAILDADKEGFLRSETSLVQTIGRA 540 >sp|A5DAC8|DBP3_PICGU ATP-dependent RNA helicase DBP3 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DBP3 PE=3 SV=2 Length=534 Score = 40.8 bits (94), Expect = 0.041, Method: Compositional matrix adjust. Identities = 29/84 (35%), Positives = 42/84 (50%), Gaps = 2/84 (2%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR 473 ++Q+ + + F+ G NLL+AT VA GLDIP+ VV+ V GR R Sbjct 404 LSQQQRTSALDSFKRGDSNLLLATDVAARGLDIPNVKVVINLTFPLTVEDYVHRIGRTGR 463 Query 474 ADQSVYAF-VATEGSRELKRELIN 496 A Q+ A + TE + L L+N Sbjct 464 AGQTGIAHTLFTEHEKHLSGALMN 487 >sp|Q5GRL3|UVRB_WOLTR UvrABC system protein B OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) OX=292805 GN=uvrB PE=3 SV=1 Length=645 Score = 40.8 bits (94), Expect = 0.042, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 +++ K + +++L+ ++ EGLDIP C +V + G L +E S++Q GRA Sbjct 485 DIVYKLRSKEIDVLIGVNLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRA 540 >sp|Q2GWJ5|FAL1_CHAGB ATP-dependent RNA helicase FAL1 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=FAL1 PE=3 SV=1 Length=394 Score = 40.4 bits (93), Expect = 0.043, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 3/86 (3%) Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 SS M Q+++ ++Q F+ G +L++T V G+D+ ++V+ Y L +N + + Sbjct 294 SSMHGDMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHR 353 Query 469 RGRA-RADQSVYA--FVATEGSRELK 491 GR+ R + A FV +E R L+ Sbjct 354 IGRSGRFGRKGVAINFVTSEDVRILR 379 >sp|A6QUM7|DBP10_AJECN ATP-dependent RNA helicase DBP10 OS=Ajellomyces capsulatus (strain NAm1 / WU24) OX=2059318 GN=DBP10 PE=3 SV=1 Length=900 Score = 40.8 bits (94), Expect = 0.043, Method: Compositional matrix adjust. Identities = 21/59 (36%), Positives = 34/59 (58%), Gaps = 1/59 (2%) Query 424 IQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF 481 +Q F+DG ++LV T VA G+DIP + V+ Y + V GR ARA ++ +++ Sbjct 407 VQNFRDGITHILVVTDVAARGIDIPILSNVINYDFPSQPKIFVHRVGRTARAGKTGWSY 465 >sp|Q7MYL2|RHLB_PHOLL ATP-dependent RNA helicase RhlB OS=Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01) OX=243265 GN=rhlB PE=3 SV=1 Length=428 Score = 40.4 bits (93), Expect = 0.043, Method: Compositional matrix adjust. Identities = 38/138 (28%), Positives = 62/138 (45%), Gaps = 20/138 (14%) Query 346 PENP-KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI 404 P N K+ +L+ +L+ ++ R IIF T+ + W L R LL Sbjct 238 PSNEEKMRLLQTLLEEEWPD----RCIIFANTKHRCEDI--WAH----LAADGHRVGLLT 287 Query 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 G + Q+ + ++++F +G +++LVAT VA GL IP V Y L + Sbjct 288 G--------DVAQKKRLRILEEFSNGNIDILVATDVAARGLHIPLVTHVFNYDLPDDCED 339 Query 465 MVQARGR-ARADQSVYAF 481 V GR RA +S ++ Sbjct 340 YVHRIGRTGRAGESGHSI 357 >sp|A6ZUA1|DBP3_YEAS7 ATP-dependent RNA helicase DBP3 OS=Saccharomyces cerevisiae (strain YJM789) OX=307796 GN=DBP3 PE=3 SV=1 Length=523 Score = 40.8 bits (94), Expect = 0.044, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 2/84 (2%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR 473 ++Q+ + + + +F+ G NLL+AT VA GLDIP+ V+ V GR R Sbjct 393 LSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGR 452 Query 474 ADQSVYAF-VATEGSRELKRELIN 496 A Q+ A + TE + L L+N Sbjct 453 AGQTGTAHTLFTEQEKHLAGGLVN 476 >sp|Q0HQL1|RHLB_SHESR ATP-dependent RNA helicase RhlB OS=Shewanella sp. (strain MR-7) OX=60481 GN=rhlB PE=3 SV=1 Length=439 Score = 40.4 bits (93), Expect = 0.045, Method: Compositional matrix adjust. Identities = 30/103 (29%), Positives = 47/103 (46%), Gaps = 14/103 (14%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 + I+F+ T+ S +L WL+ R LL G + Q+ + ++++F Sbjct 258 KAIVFSNTKHSCENLWSWLEGDGH------RVGLLTG--------DVPQKKRIRILEQFT 303 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 G L++LVAT VA GL I + V Y L + V GR Sbjct 304 QGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGR 346 >sp|Q0HN76|RHLB_SHESM ATP-dependent RNA helicase RhlB OS=Shewanella sp. (strain MR-4) OX=60480 GN=rhlB PE=3 SV=1 Length=439 Score = 40.4 bits (93), Expect = 0.045, Method: Compositional matrix adjust. Identities = 30/103 (29%), Positives = 47/103 (46%), Gaps = 14/103 (14%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 + I+F+ T+ S +L WL+ R LL G + Q+ + ++++F Sbjct 258 KAIVFSNTKHSCENLWSWLEGDGH------RVGLLTG--------DVPQKKRIRILEQFT 303 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 G L++LVAT VA GL I + V Y L + V GR Sbjct 304 QGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGR 346 >sp|B5YJW4|UVRB_THEYD UvrABC system protein B OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) OX=289376 GN=uvrB PE=3 SV=1 Length=671 Score = 40.8 bits (94), Expect = 0.045, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 63/126 (50%), Gaps = 22/126 (17%) Query 352 EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ 411 ++LE+I +R S R ++ T T++ A L + TV I+A+ L Sbjct 438 DLLEEIHKR---VSRGERVLVTTITKKMAEDLTDYYT------TVGIKAKYL-------- 480 Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY-----GLLTNEISMV 466 + + ++ E+++ + G ++L+ ++ EGLD+P ++V + G L +E S++ Sbjct 481 HSDIDTLERVEILKDLRLGKFDVLIGVNLLREGLDLPEVSLVAIFDADKEGFLRSERSLI 540 Query 467 QARGRA 472 Q GRA Sbjct 541 QTAGRA 546 >sp|B6J8A0|UVRB_COXB1 UvrABC system protein B OS=Coxiella burnetii (strain CbuK_Q154) OX=434924 GN=uvrB PE=3 SV=1 Length=672 Score = 40.8 bits (94), Expect = 0.045, Method: Compositional matrix adjust. Identities = 20/56 (36%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + G ++LV ++ EGLDIP ++V + G L +E S++Q GRA Sbjct 486 EIIRDLRLGVFDMLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTMGRA 541 >sp|P0CQ86|DBP5_CRYNJ ATP-dependent RNA helicase DBP5 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=DBP5 PE=3 SV=2 Length=518 Score = 40.8 bits (94), Expect = 0.045, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 2/64 (3%) Query 395 TVDIRAQLLIGAGNSSQSTHMTQRDQQE--VIQKFQDGTLNLLVATSVAEEGLDIPHCNV 452 T D A+ LI G++ S H + Q+ ++ F++G +L+ T+V G+DIP N+ Sbjct 372 TADHIAERLISEGHAVASLHGDKLSQERDAILDGFRNGETKVLITTNVIARGIDIPAVNM 431 Query 453 VVRY 456 VV Y Sbjct 432 VVNY 435 >sp|Q7W8V6|UVRB_BORPA UvrABC system protein B OS=Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253) OX=257311 GN=uvrB PE=3 SV=1 Length=675 Score = 40.8 bits (94), Expect = 0.046, Method: Compositional matrix adjust. Identities = 21/56 (38%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + G ++LV S+ EGLDIP ++V + G L +E S++Q GRA Sbjct 495 EIIRDLRLGVFDVLVGISLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA 550 >sp|Q1E2B2|DRS1_COCIM ATP-dependent RNA helicase DRS1 OS=Coccidioides immitis (strain RS) OX=246410 GN=DRS1 PE=3 SV=1 Length=840 Score = 40.8 bits (94), Expect = 0.046, Method: Compositional matrix adjust. Identities = 49/182 (27%), Positives = 83/182 (46%), Gaps = 30/182 (16%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA-GNSSQSTH--MTQRDQQEVIQ 425 R I+F R ++ AH RA+++ G G + H M+Q + ++ Sbjct 566 RVIVFFRQKKEAH-----------------RARIIFGLLGLKAAELHGSMSQEQRINAVE 608 Query 426 KFQDGTLNLLVATSVAEEGLDIPHCNVVVRY-GLLTNEISMVQARGRARADQSVYA-FVA 483 F+DG + L+AT +A GLDI V+ Y ++EI + + ARA +S A +A Sbjct 609 AFRDGKVPFLLATDLASRGLDIKGVESVINYEAPQSHEIYLHRVGRTARAGRSGRACTIA 668 Query 484 TEGSRELKRELINEA-------LETLMEQAVAAVQKMDQAEYQAKIRD-LQQAALTKRAA 535 E R++ + + + +++ AVA E QA+I D L++ K+ A Sbjct 669 AEPDRKVVKAAVKAGRAQGAKIVSRVVDPAVADEWASKVEEMQAEIEDILKEEKEEKQLA 728 Query 536 QA 537 QA Sbjct 729 QA 730 >sp|Q4I662|DBP8_GIBZE ATP-dependent RNA helicase DBP8 OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=DBP8 PE=3 SV=1 Length=547 Score = 40.8 bits (94), Expect = 0.046, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 2/90 (2%) Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 +S + + QR + + + +F+ +LVAT VA GLDIP ++V+ Y L + + Sbjct 399 TSLHSKLPQRQRIDNLARFRASAARILVATDVAARGLDIPEVSLVINYDLPRDPDDYIHR 458 Query 469 RGR-ARADQSVYAFVATEGSRELKRELINE 497 GR ARA + A V+ G R+++ L E Sbjct 459 VGRTARAGRKGEA-VSFVGQRDVELALTIE 487 >sp|A5DKW3|DRS1_PICGU ATP-dependent RNA helicase DRS1 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DRS1 PE=3 SV=2 Length=705 Score = 40.8 bits (94), Expect = 0.046, Method: Compositional matrix adjust. Identities = 33/138 (24%), Positives = 64/138 (46%), Gaps = 16/138 (12%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 R ++F ++ AH L + L L+G S +TQ + + ++ F+ Sbjct 449 RIVVFVSRKEMAHRLRIVLG--------------LLGMKVSELHGSLTQEQRLQSVKDFR 494 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGL-LTNEISMVQARGRARADQSVYAFVATEGS 487 + +L+ T +A GLDIP +V+ + + T+EI + + ARA + + G Sbjct 495 SLAVPVLICTDLAARGLDIPKIEIVINFDMPKTHEIYLHRVGRTARAGREGRSITFV-GE 553 Query 488 RELKRELINEALETLMEQ 505 R ++ +A+++L EQ Sbjct 554 SNQDRSIVKDAIKSLEEQ 571 >sp|Q5L3G9|CSHA_GEOKA DEAD-box ATP-dependent RNA helicase CshA OS=Geobacillus kaustophilus (strain HTA426) OX=235909 GN=cshA PE=3 SV=1 Length=467 Score = 40.4 bits (93), Expect = 0.046, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 65/139 (47%), Gaps = 25/139 (18%) Query 347 ENPKLEMLEKILQRQFSSSNSPR-GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 E K ++L ++L Q +P I+F RT++ VD A+ L Sbjct 224 EKKKFDILTRLLDIQ-----APELAIVFGRTKRR----------------VDELAEALNL 262 Query 406 AGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI 463 G +++ H ++Q + V++KF++G + +LVAT VA GLDI V + + + Sbjct 263 RGYAAEGIHGDLSQAKRLSVLRKFKEGAIEILVATDVAARGLDISGVTHVYNFDIPQDPE 322 Query 464 SMVQARGR-ARADQSVYAF 481 S V GR RA ++ A Sbjct 323 SYVHRIGRTGRAGKTGVAM 341 >sp|Q63NE3|UVRB_BURPS UvrABC system protein B OS=Burkholderia pseudomallei (strain K96243) OX=272560 GN=uvrB PE=3 SV=1 Length=696 Score = 40.8 bits (94), Expect = 0.046, Method: Compositional matrix adjust. Identities = 37/134 (28%), Positives = 64/134 (48%), Gaps = 9/134 (7%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRARADQ 476 E+I+ + GT ++LV ++ EGLDIP ++V + G L E S++Q GRA + Sbjct 506 EIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAARNV 565 Query 477 SVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA--KIRDLQQAALTKRA 534 + A + + + R I+E E + +A +KM +I+D+ Sbjct 566 NGKALLYADRITDSMRRAIDET-ERRRAKQIAYNEKMGITPRGVVKRIKDIIDGVYNADE 624 Query 535 AQAAQRE-NQRQQF 547 A+A +E QR +F Sbjct 625 ARAELKEAQQRAKF 638 >sp|Q62CK6|UVRB_BURMA UvrABC system protein B OS=Burkholderia mallei (strain ATCC 23344) OX=243160 GN=uvrB PE=3 SV=1 Length=696 Score = 40.8 bits (94), Expect = 0.046, Method: Compositional matrix adjust. Identities = 37/134 (28%), Positives = 64/134 (48%), Gaps = 9/134 (7%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRARADQ 476 E+I+ + GT ++LV ++ EGLDIP ++V + G L E S++Q GRA + Sbjct 506 EIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAARNV 565 Query 477 SVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA--KIRDLQQAALTKRA 534 + A + + + R I+E E + +A +KM +I+D+ Sbjct 566 NGKALLYADRITDSMRRAIDET-ERRRAKQIAYNEKMGITPRGVVKRIKDIIDGVYNADE 624 Query 535 AQAAQRE-NQRQQF 547 A+A +E QR +F Sbjct 625 ARAELKEAQQRAKF 638 >sp|P20447|DBP3_YEAST ATP-dependent RNA helicase DBP3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DBP3 PE=1 SV=2 Length=523 Score = 40.8 bits (94), Expect = 0.047, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 2/84 (2%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR 473 ++Q+ + + + +F+ G NLL+AT VA GLDIP+ V+ V GR R Sbjct 393 LSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGR 452 Query 474 ADQSVYAF-VATEGSRELKRELIN 496 A Q+ A + TE + L L+N Sbjct 453 AGQTGTAHTLFTEQEKHLAGGLVN 476 >sp|Q921N6|DDX27_MOUSE Probable ATP-dependent RNA helicase DDX27 OS=Mus musculus OX=10090 GN=Ddx27 PE=1 SV=3 Length=760 Score = 40.8 bits (94), Expect = 0.048, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 63/132 (48%), Gaps = 20/132 (15%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 ++FT+T++ AH + + L Q+ GN SQ+ + E +++F+D Sbjct 433 MLFTQTKKQAHRMHILLGLLG--------LQVGELHGNLSQTQRL------EALRRFKDE 478 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR----ARADQSVYAFVATEG 486 +++LVAT VA GLDI V+ + + V GR RA +SV + E Sbjct 479 QIDILVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRSVS--LVGEE 536 Query 487 SRELKRELINEA 498 R++ +E++ A Sbjct 537 ERKMLKEIVKAA 548 >sp|P0CQ87|DBP5_CRYNB ATP-dependent RNA helicase DBP5 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=DBP5 PE=3 SV=1 Length=546 Score = 40.4 bits (93), Expect = 0.049, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 2/64 (3%) Query 395 TVDIRAQLLIGAGNSSQSTHMTQRDQQE--VIQKFQDGTLNLLVATSVAEEGLDIPHCNV 452 T D A+ LI G++ S H + Q+ ++ F++G +L+ T+V G+DIP N+ Sbjct 400 TADHIAERLISEGHAVASLHGDKLSQERDAILDGFRNGETKVLITTNVIARGIDIPAVNM 459 Query 453 VVRY 456 VV Y Sbjct 460 VVNY 463 >sp|A1D6X9|DBP8_NEOFI ATP-dependent RNA helicase dbp8 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dbp8 PE=3 SV=1 Length=526 Score = 40.4 bits (93), Expect = 0.049, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 36/68 (53%), Gaps = 1/68 (1%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR 473 + Q ++ + +F+ +LVAT VA GLDIP ++V+ Y + N V GR AR Sbjct 385 LPQSERNANLARFRASAARILVATDVASRGLDIPTVSLVINYDVPRNPDDYVHRVGRTAR 444 Query 474 ADQSVYAF 481 A +S A Sbjct 445 AGRSGEAI 452 >sp|B1KQF6|RHLB_SHEWM ATP-dependent RNA helicase RhlB OS=Shewanella woodyi (strain ATCC 51908 / MS32) OX=392500 GN=rhlB PE=3 SV=1 Length=441 Score = 40.4 bits (93), Expect = 0.049, Method: Compositional matrix adjust. Identities = 26/90 (29%), Positives = 44/90 (49%), Gaps = 14/90 (16%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 + I+F+ T+ S ++ WL+ R LL G + Q+ + ++++F Sbjct 258 KAIVFSNTKHSCENVWSWLEGDGH------RVGLLTG--------DVPQKKRIRILEQFT 303 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGL 458 +G L++LVAT VA GL I + V Y L Sbjct 304 EGKLDILVATDVAARGLHISDVSHVYNYDL 333 >sp|A4QSS5|DBP2_PYRO7 ATP-dependent RNA helicase DBP2 OS=Pyricularia oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 GN=DBP2 PE=3 SV=1 Length=548 Score = 40.4 bits (93), Expect = 0.049, Method: Compositional matrix adjust. Identities = 37/141 (26%), Positives = 67/141 (48%), Gaps = 20/141 (14%) Query 354 LEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQST 413 +EK++ + S + + +IF T++ A + +L+Q G + I G+ Q+ Sbjct 364 MEKVMDGKDSKN---KILIFVGTKRVADEITRFLRQD-GWPALSIH-------GDKQQN- 411 Query 414 HMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE---ISMVQARG 470 +RD V+ +F+ G ++VAT VA G+D+ + V+ Y N I + G Sbjct 412 ---ERDW--VLDQFKTGKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTG 466 Query 471 RARADQSVYAFVATEGSRELK 491 RA A + F TE S++ + Sbjct 467 RAGAKGTAITFFTTENSKQAR 487 >sp|Q5APT8|DBP3_CANAL ATP-dependent RNA helicase DBP3 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DBP3 PE=3 SV=1 Length=564 Score = 40.4 bits (93), Expect = 0.050, Method: Compositional matrix adjust. Identities = 26/85 (31%), Positives = 42/85 (49%), Gaps = 4/85 (5%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGR 471 ++Q+ + + F+ G NLL+AT VA GLDIP+ VV+ + + + + GR Sbjct 434 LSQQQRTAALSAFKSGQSNLLLATDVAARGLDIPNVKVVINLTFPLTIEDYVHRIGRTGR 493 Query 472 ARADQSVYAFVATEGSRELKRELIN 496 A A + + TE + L L N Sbjct 494 AGAKGTAHTLF-TEDEKHLSGALCN 517 >sp|Q9P735|FAL1_NEUCR ATP-dependent RNA helicase fal-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=fal-1 PE=3 SV=2 Length=400 Score = 40.4 bits (93), Expect = 0.050, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 3/86 (3%) Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 SS M Q+++ ++Q F+ G +L++T V G+D+ ++V+ Y L +N + + Sbjct 293 SSMHGDMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHR 352 Query 469 RGRA-RADQSVYA--FVATEGSRELK 491 GR+ R + A FV +E R L+ Sbjct 353 IGRSGRFGRKGVAINFVTSEDVRILR 378 >sp|O67708|UVRB_AQUAE UvrABC system protein B OS=Aquifex aeolicus (strain VF5) OX=224324 GN=uvrB PE=3 SV=1 Length=663 Score = 40.8 bits (94), Expect = 0.050, Method: Compositional matrix adjust. Identities = 27/130 (21%), Positives = 68/130 (52%), Gaps = 20/130 (15%) Query 349 PKLEMLEKILQR-QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG 407 PK+ LE +++ + R ++ T T++ A + +L +++ IRA+ + Sbjct 429 PKMNQLENLVKEIKEVKKRKERALVLTTTKRLAEEIADYLTERK------IRAKYM---- 478 Query 408 NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNE 462 + + ++ ++I++ ++G+++++V ++ EGLD+P ++V + G L + Sbjct 479 ----HSELDAIERAQLIRELREGSIDVIVGVNLLREGLDLPEVSLVAIMDADKEGFLRSY 534 Query 463 ISMVQARGRA 472 +++Q GRA Sbjct 535 QALIQTIGRA 544 >sp|Q5H9U9|DDX6L_HUMAN Probable ATP-dependent RNA helicase DDX60-like OS=Homo sapiens OX=9606 GN=DDX60L PE=1 SV=3 Length=1706 Score = 40.8 bits (94), Expect = 0.051, Method: Compositional matrix adjust. Identities = 61/251 (24%), Positives = 105/251 (42%), Gaps = 33/251 (13%) Query 5 SYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHG 64 ++Q E++ + ++ +I PT +GKT A+ Y ++ L D VV + LV Q Sbjct 746 AWQQELLDVVDKNESAVIVAPTSSGKTYASYYCMEKVLRESDVGVVVYVAPAKSLVGQVA 805 Query 65 EEFRRMLDGRWTVTTLSGDMGPRAGFGHLAR--CHDLLIC-----TAELLQMALTSPEEE 117 ++ R+T T +G R G R CH++L C E ++ L +P + Sbjct 806 A----TVENRFTKTLPAG----RTLCGAFTRDYCHNVLNCQVLITVPECFEILLLAPHRQ 857 Query 118 EHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASK 177 + VE + ++ DE H+ ++ + +++ EL L + VL T + Sbjct 858 KWVERIRY--VIFDEVHYLGRE-----VGAKFWELLLVIIRCPFLVLSATINNPNLLTKW 910 Query 178 LDGAINHVLQLCANLDTWCIMSPQ--NCCPQLQEHSQQPCKQYN----LCHRRSQDPFGD 231 L + Q ++ CI Q C LQ+HS + + Y LC R + D Sbjct 911 LQSVKQYWKQADKIMEEKCISEKQADKCLNFLQDHSYKN-QSYEVRLVLCGER----YND 965 Query 232 LLKKLMDQIHD 242 L K + HD Sbjct 966 LEKHICSVKHD 976 >sp|A0KS84|RHLB_SHESA ATP-dependent RNA helicase RhlB OS=Shewanella sp. (strain ANA-3) OX=94122 GN=rhlB PE=3 SV=1 Length=439 Score = 40.4 bits (93), Expect = 0.051, Method: Compositional matrix adjust. Identities = 30/103 (29%), Positives = 47/103 (46%), Gaps = 14/103 (14%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 + I+F+ T+ S +L WL+ R LL G + Q+ + ++++F Sbjct 258 KAIVFSNTKHSCENLWSWLEGDGH------RVGLLTG--------DVPQKKRIRILEQFT 303 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 G L++LVAT VA GL I + V Y L + V GR Sbjct 304 QGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGR 346 >sp|P30958|MFD_ECOLI Transcription-repair-coupling factor OS=Escherichia coli (strain K12) OX=83333 GN=mfd PE=1 SV=2 Length=1148 Score = 40.8 bits (94), Expect = 0.052, Method: Compositional matrix adjust. Identities = 28/91 (31%), Positives = 45/91 (49%), Gaps = 16/91 (18%) Query 400 AQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV----- 454 A++ IG G M +R+ + V+ F N+LV T++ E G+DIP N ++ Sbjct 836 ARIAIGHG------QMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERAD 889 Query 455 RYGLLTNEISMVQARGR-ARADQSVYAFVAT 484 +GL + Q RGR R+ YA++ T Sbjct 890 HFGL----AQLHQLRGRVGRSHHQAYAWLLT 916 >sp|Q8EJQ5|RHLB_SHEON ATP-dependent RNA helicase RhlB OS=Shewanella oneidensis (strain ATCC 700550 / JCM 31522 / CIP 106686 / LMG 19005 / NCIMB 14063 / MR-1) OX=211586 GN=rhlB PE=3 SV=1 Length=439 Score = 40.4 bits (93), Expect = 0.052, Method: Compositional matrix adjust. Identities = 30/103 (29%), Positives = 47/103 (46%), Gaps = 14/103 (14%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 + I+F+ T+ S +L WL+ R LL G + Q+ + ++++F Sbjct 258 KAIVFSNTKHSCENLWSWLEGDGH------RVGLLTG--------DVPQKKRIRILEQFT 303 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 G L++LVAT VA GL I + V Y L + V GR Sbjct 304 QGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGR 346 >sp|A3LNL1|PRP28_PICST Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) OX=322104 GN=PRP28 PE=3 SV=2 Length=482 Score = 40.4 bits (93), Expect = 0.053, Method: Compositional matrix adjust. Identities = 40/164 (24%), Positives = 69/164 (42%), Gaps = 22/164 (13%) Query 342 ATHGPEN---PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI 398 AT G E+ + + L +I+Q+ S IIF ++ L L L++ V I Sbjct 310 ATGGSEDFDSKRFDKLVRIIQQHSRESRQFSIIIFANYKRVCDLLSLELEKNGFRDNVVI 369 Query 399 RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL 458 TQ +++ I F+ +L+AT VA G+D+P+ ++VV + + Sbjct 370 HGS-------------KTQELREKAISSFRSHESRILIATDVAARGIDVPNVSLVVNFQM 416 Query 459 ---LTNEISMVQARGRARADQSVYAFVATEGSR---ELKRELIN 496 + + GRA Y F+ S +LK+ L+N Sbjct 417 SRKFDEYVHRIGRTGRAGNRGESYTFIDDSDSDVFIDLKKFLVN 460 >sp|Q46IE1|UVRB_PROMT UvrABC system protein B OS=Prochlorococcus marinus (strain NATL2A) OX=59920 GN=uvrB PE=3 SV=1 Length=678 Score = 40.4 bits (93), Expect = 0.053, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 67/135 (50%), Gaps = 25/135 (19%) Query 343 THGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL 402 THG + ++L +I +R +S + R ++ T T++ A L +L + + IR + Sbjct 426 THGQVD---DLLFEIRKR---ASKNQRILVTTLTKRMAEDLTDYLSENK------IRVRY 473 Query 403 LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYG 457 L H +R E+IQ + G ++LV ++ EGLD+P ++VV + G Sbjct 474 L------HSEIHSIER--IEIIQDLRLGEYDVLVGVNLLREGLDLPEVSLVVILDADKEG 525 Query 458 LLTNEISMVQARGRA 472 L + S++Q GRA Sbjct 526 FLRAQRSLIQTIGRA 540 >sp|A2C5B3|UVRB_PROM1 UvrABC system protein B OS=Prochlorococcus marinus (strain NATL1A) OX=167555 GN=uvrB PE=3 SV=1 Length=678 Score = 40.4 bits (93), Expect = 0.053, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 67/135 (50%), Gaps = 25/135 (19%) Query 343 THGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL 402 THG + ++L +I +R +S + R ++ T T++ A L +L + + IR + Sbjct 426 THGQVD---DLLFEIRKR---ASKNQRILVTTLTKRMAEDLTDYLSENK------IRVRY 473 Query 403 LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYG 457 L H +R E+IQ + G ++LV ++ EGLD+P ++VV + G Sbjct 474 L------HSEIHSIER--IEIIQDLRLGEYDVLVGVNLLREGLDLPEVSLVVILDADKEG 525 Query 458 LLTNEISMVQARGRA 472 L + S++Q GRA Sbjct 526 FLRAQRSLIQTIGRA 540 >sp|A4QU31|FAL1_PYRO7 ATP-dependent RNA helicase FAL1 OS=Pyricularia oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 GN=FAL1 PE=3 SV=1 Length=401 Score = 40.4 bits (93), Expect = 0.053, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 3/86 (3%) Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 SS M Q+++ ++Q F+ G +L++T V G+D+ ++V+ Y L +N + + Sbjct 294 SSMHGDMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHR 353 Query 469 RGRA-RADQSVYA--FVATEGSRELK 491 GR+ R + A FV +E R L+ Sbjct 354 IGRSGRFGRKGVAINFVTSEDVRILR 379 >sp|Q12TR7|UVRB_METBU UvrABC system protein B OS=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) OX=259564 GN=uvrB PE=3 SV=1 Length=660 Score = 40.4 bits (93), Expect = 0.053, Method: Compositional matrix adjust. Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 5/69 (7%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRAR 473 ++ E+I+ + G ++LV ++ EGLDIP V + G L +E S++Q GRA Sbjct 484 ERAEIIRDLRKGVFDVLVGINLLREGLDIPEVAFVAILDADKEGFLRSERSLIQTMGRAS 543 Query 474 ADQSVYAFV 482 + Y + Sbjct 544 RNADGYVIL 552 >sp|A1SZG4|RHLB_PSYIN ATP-dependent RNA helicase RhlB OS=Psychromonas ingrahamii (strain DSM 17664 / CCUG 51855 / 37) OX=357804 GN=rhlB PE=3 SV=1 Length=418 Score = 40.4 bits (93), Expect = 0.054, Method: Compositional matrix adjust. Identities = 28/104 (27%), Positives = 47/104 (45%), Gaps = 14/104 (13%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 + I+F T+ + + +L +R LL G + Q + +++Q+F Sbjct 258 KAIVFANTKHTCEKVWGYLAGD------GLRTGLLTG--------DVPQNKRLKILQQFT 303 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA 472 DG +++LVAT VA GL IP + V + L + V GR Sbjct 304 DGEIDILVATDVAARGLHIPKVSHVFNFDLPDDCEDYVHRIGRT 347 >sp|Q3ITS0|UVRB_NATPD UvrABC system protein B OS=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160 / CIP 103997 / JCM 8858 / NBRC 14720 / NCIMB 2260 / Gabara) OX=348780 GN=uvrB PE=3 SV=1 Length=683 Score = 40.4 bits (93), Expect = 0.054, Method: Compositional matrix adjust. Identities = 37/165 (22%), Positives = 72/165 (44%), Gaps = 33/165 (20%) Query 349 PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN 408 P + +E +++R ++ R ++ T T++ A L +L+ G Sbjct 438 PAEKQVEDLIERIQATPEDERVLVTTLTKRMAEDLTEYLEN--------------AGVDV 483 Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEI 463 + ++ E+++ + G + +LV ++ EGLDIP ++V + G L +E Sbjct 484 AYMHDETDTLERHELVRSLRLGEIQVLVGINLLREGLDIPEVSLVAILDADQEGFLRSET 543 Query 464 SMVQARGRA----------RADQSVYAFVA----TEGSRELKREL 494 ++VQ GRA AD++ + A T RE++RE Sbjct 544 TLVQTMGRAARNVEGSVVLYADETTDSMAAAIEETRRRREIQREF 588 >sp|P43809|RECG_HAEIN ATP-dependent DNA helicase RecG OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=recG PE=3 SV=1 Length=693 Score = 40.4 bits (93), Expect = 0.054, Method: Compositional matrix adjust. Identities = 15/40 (38%), Positives = 32/40 (80%), Gaps = 0/40 (0%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV 454 M +++Q+V+ +F++ L+LLVAT+V E G+D+P+ ++++ Sbjct 527 MKPQEKQDVMMRFKNAELDLLVATTVIEVGVDVPNASLMI 566 >sp|B7KC96|UVRB_GLOC7 UvrABC system protein B OS=Gloeothece citriformis (strain PCC 7424) OX=65393 GN=uvrB PE=3 SV=1 Length=665 Score = 40.4 bits (93), Expect = 0.055, Method: Compositional matrix adjust. Identities = 27/109 (25%), Positives = 55/109 (50%), Gaps = 19/109 (17%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 R +I T T++ A L + Q++ ++ Q L + ++ ++ E++Q + Sbjct 446 RVLITTLTKRMAEDLTEYFQER------GVKVQYL--------HSEISSIERIEILQNLR 491 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 +G ++L+ ++ EGLD+P ++V + G L E S++Q GRA Sbjct 492 EGEFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRA 540 >sp|Q761Z9|RH18_ORYSJ DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0164500 PE=1 SV=2 Length=647 Score = 40.4 bits (93), Expect = 0.055, Method: Compositional matrix adjust. Identities = 24/69 (35%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR 473 M Q +++ + F + +LV T VA GLDIPH +++V+Y + + GR AR Sbjct 322 MKQGPREKALASFSALSSGILVCTDVAARGLDIPHVDLIVQYDPPQDPNVFIHRAGRTAR 381 Query 474 ADQSVYAFV 482 DQ A V Sbjct 382 YDQEGDAIV 390 >sp|Q473K3|UVRB_CUPPJ UvrABC system protein B OS=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) OX=264198 GN=uvrB PE=3 SV=1 Length=695 Score = 40.4 bits (93), Expect = 0.055, Method: Compositional matrix adjust. Identities = 21/56 (38%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + GT ++LV ++ EGLDIP ++V + G L E S++Q GRA Sbjct 505 EIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRA 560 >sp|Q0D1K3|PRP5_ASPTN Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=prp5 PE=3 SV=1 Length=1181 Score = 40.8 bits (94), Expect = 0.056, Method: Compositional matrix adjust. Identities = 33/114 (29%), Positives = 52/114 (46%), Gaps = 20/114 (18%) Query 347 ENPKLEMLEKILQRQFSSSNS--PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI 404 E+ K L ++L +SS + R +IF +++A +LL L ++ Sbjct 779 EDKKFVRLLELLGNLYSSDENEDARALIFVERQEAADTLLRELMRK-------------- 824 Query 405 GAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY 456 G S H Q D+ I+ F+ G +L+ATSVA GLD+ +VV Y Sbjct 825 --GYPCMSIHGGKDQIDRDSTIEDFKAGIFPVLIATSVAARGLDVKQLKLVVNY 876 >sp|P32892|DRS1_YEAST ATP-dependent RNA helicase DRS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DRS1 PE=1 SV=2 Length=752 Score = 40.4 bits (93), Expect = 0.058, Method: Compositional matrix adjust. Identities = 24/101 (24%), Positives = 46/101 (46%), Gaps = 14/101 (14%) Query 358 LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ 417 L R+ + R ++F +++AH L + + L+G +TQ Sbjct 470 LIRKLDPTGQKRIVVFVARKETAHRLRIIMG--------------LLGMSVGELHGSLTQ 515 Query 418 RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL 458 + + + KF++ + +L+ T +A GLDIP VV+ Y + Sbjct 516 EQRLDSVNKFKNLEVPVLICTDLASRGLDIPKIEVVINYDM 556 >sp|A7A0P8|DRS1_YEAS7 ATP-dependent RNA helicase DRS1 OS=Saccharomyces cerevisiae (strain YJM789) OX=307796 GN=DRS1 PE=3 SV=1 Length=754 Score = 40.4 bits (93), Expect = 0.058, Method: Compositional matrix adjust. Identities = 24/101 (24%), Positives = 46/101 (46%), Gaps = 14/101 (14%) Query 358 LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ 417 L R+ + R ++F +++AH L + + L+G +TQ Sbjct 472 LIRKLDPTGQKRIVVFVARKETAHRLRIIMG--------------LLGMSVGELHGSLTQ 517 Query 418 RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL 458 + + + KF++ + +L+ T +A GLDIP VV+ Y + Sbjct 518 EQRLDSVNKFKNLEVPVLICTDLASRGLDIPKIEVVINYDM 558 >sp|Q75NR7|RECQ4_MOUSE ATP-dependent DNA helicase Q4 OS=Mus musculus OX=10090 GN=Recql4 PE=2 SV=2 Length=1216 Score = 40.4 bits (93), Expect = 0.058, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 13/140 (9%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARA 474 M+ ++++ V Q F G L ++VAT GLD P V+ GL + S VQA GRA Sbjct 770 MSSQERRRVQQAFMRGHLRMVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAIGRAGR 829 Query 475 DQS---VYAFVATEGSR--ELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAA 529 D + F+ +G EL+R ++ + L AV+++ Q + Q Sbjct 830 DGKPAHCHLFMHPQGEDLWELRRHAHADSTDFL------AVKRLVQRVFPPCT--CSQRP 881 Query 530 LTKRAAQAAQRENQRQQFPV 549 ++K + + + + +Q +PV Sbjct 882 VSKSSPEEVKEHSGQQTYPV 901 >sp|Q0CLX0|PRP28_ASPTN Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=prp28 PE=3 SV=1 Length=783 Score = 40.4 bits (93), Expect = 0.058, Method: Compositional matrix adjust. Identities = 31/107 (29%), Positives = 57/107 (53%), Gaps = 8/107 (7%) Query 407 GNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 G SS + H TQ ++ + ++G+ ++LVAT +A G+D+P ++VV + + T+ S Sbjct 646 GFSSVTLHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMATSIES 705 Query 465 MVQARGR-ARADQSVYA--FVATEGSR---ELKRELINEALETLMEQ 505 GR RA +S A F+ E + +LK+ LI + + ++ Sbjct 706 YTHRIGRTGRAGKSGVAITFLGNEDADVMYDLKQMLIKSPISRVPDE 752 >sp|A5DLE0|DBP8_PICGU ATP-dependent RNA helicase DBP8 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DBP8 PE=3 SV=2 Length=433 Score = 40.0 bits (92), Expect = 0.058, Method: Compositional matrix adjust. Identities = 26/88 (30%), Positives = 45/88 (51%), Gaps = 9/88 (10%) Query 390 QQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPH 449 ++ L+ +DIR +S + M Q ++ + +F+ G +L+AT VA GLDIP+ Sbjct 270 RRTLRKLDIRV--------ASLHSEMPQSERTNSLHRFRAGAARVLIATDVASRGLDIPN 321 Query 450 CNVVVRYGLLTNEISMVQARGR-ARADQ 476 +VV + + + GR ARA + Sbjct 322 VELVVNQDIPADPDDYIHRVGRTARAGK 349 >sp|Q6FS54|DBP3_CANGA ATP-dependent RNA helicase DBP3 OS=Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DBP3 PE=3 SV=1 Length=540 Score = 40.4 bits (93), Expect = 0.059, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 2/84 (2%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR 473 ++Q+ + + + +F+ G NLL+AT VA GLDIP+ V+ V GR R Sbjct 410 LSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGR 469 Query 474 ADQSVYA-FVATEGSRELKRELIN 496 A Q+ A + TE + L L+N Sbjct 470 AGQTGTAHTLFTEQEKHLAGGLVN 493 >sp|Q9PA24|RHLB_XYLFA ATP-dependent RNA helicase RhlB OS=Xylella fastidiosa (strain 9a5c) OX=160492 GN=rhlB PE=3 SV=2 Length=543 Score = 40.4 bits (93), Expect = 0.059, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 37/73 (51%), Gaps = 3/73 (4%) Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 S + QR ++ ++ +FQ G L +LVAT VA GL I N V Y L + V GR Sbjct 288 SGDVPQRKRETLLNRFQKGQLEILVATDVAARGLHIDGVNYVYNYDLPFDAEDYVHRIGR 347 Query 472 -AR--ADQSVYAF 481 AR AD +F Sbjct 348 TARLGADGDAISF 360 >sp|A4XKY5|UVRB_CALS8 UvrABC system protein B OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903 / Tp8T 6331) OX=351627 GN=uvrB PE=3 SV=1 Length=661 Score = 40.4 bits (93), Expect = 0.061, Method: Compositional matrix adjust. Identities = 29/109 (27%), Positives = 55/109 (50%), Gaps = 19/109 (17%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 R +I T T++ A SL +L+ V IR + + + + ++ ++I+ + Sbjct 446 RVLITTLTKKMAESLTEYLKD------VGIRVRYM--------HSDIDTIERMQIIRDLR 491 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 492 LGKFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRA 540 >sp|Q5HK76|HSDR_STAEQ Type I restriction enzyme SepRPIP endonuclease subunit OS=Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A) OX=176279 GN=hsdR PE=3 SV=1 Length=930 Score = 40.4 bits (93), Expect = 0.061, Method: Compositional matrix adjust. Identities = 52/203 (26%), Positives = 80/203 (39%), Gaps = 33/203 (16%) Query 1 MELRSYQW---EVIMP-ALE-GKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVN 55 M LR YQ E I+ ALE N IW TG+GKT + ++ + + KV+ LV+ Sbjct 239 MALRPYQVYAVEAILNRALETNNNGYIWHTTGSGKTLTSFKASQLLSQEENIKKVIFLVD 298 Query 56 RVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLAR-CHDLLICTAELLQMALTSP 114 R L Q EF + + T R LA L++ T + + A+ S Sbjct 299 RKDLDNQTLAEFNKFQEDSVDFTD-----NTRKLLKQLADPTLPLIVTTIQKMANAVKSN 353 Query 115 EE--EEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASP-- 170 E + + V + ++DECH T ++ +I + Q G T +P Sbjct 354 HSVMESYKQDKV--IFIIDECHRTQFGDMHRLIKQHF---------ENAQYFGFTGTPRF 402 Query 171 -------GTGGASKLDGAINHVL 186 G A D ++H L Sbjct 403 EENKSQDGRATADIFDKCLHHYL 425 >sp|Q8Y0N2|UVRB_RALN1 UvrABC system protein B OS=Ralstonia nicotianae (strain ATCC BAA-1114 / GMI1000) OX=267608 GN=uvrB PE=3 SV=1 Length=696 Score = 40.4 bits (93), Expect = 0.062, Method: Compositional matrix adjust. Identities = 21/56 (38%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + GT ++LV ++ EGLDIP ++V + G L E S++Q GRA Sbjct 506 EIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRA 561 >sp|A8G0U0|RHLB_SHESH ATP-dependent RNA helicase RhlB OS=Shewanella sediminis (strain HAW-EB3) OX=425104 GN=rhlB PE=3 SV=1 Length=435 Score = 40.0 bits (92), Expect = 0.062, Method: Compositional matrix adjust. Identities = 33/123 (27%), Positives = 54/123 (44%), Gaps = 18/123 (15%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L +L+ + + I+F+ T+ S L WL+ R LL G Sbjct 243 KMRLLLTLLEEDWPD----KAIVFSNTKHSCEKLWSWLEGDGH------RVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q+ + +++ F +G L++LVAT VA GL I + V Y L + V Sbjct 289 ----DVPQKKRIRILELFTEGKLDVLVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRI 344 Query 470 GRA 472 GR Sbjct 345 GRT 347 >sp|P24782|DBP2_SCHPO ATP-dependent RNA helicase dbp2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=dbp2 PE=2 SV=2 Length=550 Score = 40.4 bits (93), Expect = 0.062, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 62/129 (48%), Gaps = 18/129 (14%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 +IFT T++ A + +L+Q G + I G+ +Q +RD V+ +F+ G Sbjct 373 LIFTGTKRVADDITRFLRQD-GWPALAIH-------GDKAQD----ERDW--VLNEFRTG 418 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE---ISMVQARGRARADQSVYAFVATEGS 487 ++VAT VA G+D+ V Y N + + GRA A + Y + ++ + Sbjct 419 KSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNA 478 Query 488 RELKRELIN 496 ++ REL++ Sbjct 479 KQA-RELVS 486 >sp|Q86XP3|DDX42_HUMAN ATP-dependent RNA helicase DDX42 OS=Homo sapiens OX=9606 GN=DDX42 PE=1 SV=1 Length=938 Score = 40.4 bits (93), Expect = 0.063, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 35/69 (51%), Gaps = 1/69 (1%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR 473 M Q ++ +VI F+ + +LVAT VA GLDIP V+ Y + + + GR R Sbjct 532 MDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGR 591 Query 474 ADQSVYAFV 482 A + A+ Sbjct 592 AGEKGVAYT 600 >sp|Q5R7D1|DDX42_PONAB ATP-dependent RNA helicase DDX42 OS=Pongo abelii OX=9601 GN=DDX42 PE=2 SV=1 Length=942 Score = 40.4 bits (93), Expect = 0.064, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 35/69 (51%), Gaps = 1/69 (1%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR 473 M Q ++ +VI F+ + +LVAT VA GLDIP V+ Y + + + GR R Sbjct 532 MDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGR 591 Query 474 ADQSVYAFV 482 A + A+ Sbjct 592 AGEKGVAYT 600 >sp|A9KCU2|UVRB_COXBN UvrABC system protein B OS=Coxiella burnetii (strain Dugway 5J108-111) OX=434922 GN=uvrB PE=3 SV=1 Length=672 Score = 40.4 bits (93), Expect = 0.064, Method: Compositional matrix adjust. Identities = 20/56 (36%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + G ++LV ++ EGLDIP ++V + G L +E S++Q GRA Sbjct 486 EIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTMGRA 541 >sp|Q83E18|UVRB_COXBU UvrABC system protein B OS=Coxiella burnetii (strain RSA 493 / Nine Mile phase I) OX=227377 GN=uvrB PE=3 SV=1 Length=672 Score = 40.4 bits (93), Expect = 0.064, Method: Compositional matrix adjust. Identities = 20/56 (36%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + G ++LV ++ EGLDIP ++V + G L +E S++Q GRA Sbjct 486 EIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTMGRA 541 >sp|A9NC09|UVRB_COXBR UvrABC system protein B OS=Coxiella burnetii (strain RSA 331 / Henzerling II) OX=360115 GN=uvrB PE=3 SV=1 Length=672 Score = 40.4 bits (93), Expect = 0.064, Method: Compositional matrix adjust. Identities = 20/56 (36%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + G ++LV ++ EGLDIP ++V + G L +E S++Q GRA Sbjct 486 EIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTMGRA 541 >sp|B6J1E8|UVRB_COXB2 UvrABC system protein B OS=Coxiella burnetii (strain CbuG_Q212) OX=434923 GN=uvrB PE=3 SV=1 Length=672 Score = 40.4 bits (93), Expect = 0.064, Method: Compositional matrix adjust. Identities = 20/56 (36%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + G ++LV ++ EGLDIP ++V + G L +E S++Q GRA Sbjct 486 EIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTMGRA 541 >sp|Q4JG17|VASAL_PENVA Probable ATP-dependent RNA helicase vasa-like OS=Penaeus vannamei OX=6689 GN=vasa PE=2 SV=2 Length=703 Score = 40.4 bits (93), Expect = 0.064, Method: Compositional matrix adjust. Identities = 35/121 (29%), Positives = 58/121 (48%), Gaps = 18/121 (15%) Query 351 LEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSS 410 +EM E+IL S++ + ++F ++ A + +L +++ RA + G Sbjct 504 VEMCEEILI----SADDEKILVFVEQKRVADFVGTYLCEKK------FRATTMHG----- 548 Query 411 QSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARG 470 + QR+Q + +F+ G N+LVAT+V GLDI VVV Y L + V G Sbjct 549 -DRYQAQREQ--ALSEFRTGVHNILVATAVTARGLDIKGIGVVVNYDLPKDIDEYVHRIG 605 Query 471 R 471 R Sbjct 606 R 606 >sp|Q8SQK9|DHH1_ENCCU ATP-dependent RNA helicase DHH1 OS=Encephalitozoon cuniculi (strain GB-M1) OX=284813 GN=DHH1 PE=3 SV=2 Length=487 Score = 40.0 bits (92), Expect = 0.065, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 40/82 (49%), Gaps = 2/82 (2%) Query 393 LQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHC 450 ++TV++ A + G S H M Q D+ V F G +LVAT + G+D P+ Sbjct 353 IKTVELLAMKITEMGLPSYFIHSKMAQEDRNIVFHNFLKGKCKILVATDLITRGVDAPNT 412 Query 451 NVVVRYGLLTNEISMVQARGRA 472 N V+ + + + S + GRA Sbjct 413 NYVINFDISKSPESYLHRIGRA 434 >sp|Q9JIK5|DDX21_MOUSE Nucleolar RNA helicase 2 OS=Mus musculus OX=10090 GN=Ddx21 PE=1 SV=3 Length=851 Score = 40.4 bits (93), Expect = 0.066, Method: Compositional matrix adjust. Identities = 29/94 (31%), Positives = 47/94 (50%), Gaps = 19/94 (20%) Query 364 SSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQ 421 S + R IIF T++ A L Q I+ +QS H + Q+ ++ Sbjct 507 SGHQGRTIIFCETKKDAQELS---------QNTCIK--------QDAQSLHGDIPQKQRE 549 Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVR 455 ++ F++G +LVAT+VA GLDIP ++VV+ Sbjct 550 ITLKGFRNGNFGVLVATNVAARGLDIPEVDLVVQ 583 >sp|Q11Z64|UVRB_CYTH3 UvrABC system protein B OS=Cytophaga hutchinsonii (strain ATCC 33406 / DSM 1761 / CIP 103989 / NBRC 15051 / NCIMB 9469 / D465) OX=269798 GN=uvrB PE=3 SV=1 Length=673 Score = 40.4 bits (93), Expect = 0.066, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 43/80 (54%), Gaps = 7/80 (9%) Query 400 AQLLIGAGNSSQSTHMTQR--DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV--- 454 + L G G ++ H + D+ E++++ + G ++LV ++ EGLD+P ++V Sbjct 461 TKFLDGVGVRTRYIHSEVKTLDRVEILRELRLGVFDVLVGVNLLREGLDLPEVSLVAIMD 520 Query 455 --RYGLLTNEISMVQARGRA 472 + G L N S+VQ GRA Sbjct 521 ADKEGFLRNVRSLVQTIGRA 540 >sp|Q5B0J9|DBP2_EMENI ATP-dependent RNA helicase dbp2 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=dbp2 PE=3 SV=1 Length=563 Score = 40.0 bits (92), Expect = 0.066, Method: Compositional matrix adjust. Identities = 35/150 (23%), Positives = 70/150 (47%), Gaps = 27/150 (18%) Query 351 LEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSS 410 ++ LEKI++ + + + ++FT T++ A + +L+Q G + Sbjct 376 IKHLEKIMENRGN-----KCLVFTGTKRIADEITRFLRQD----------------GWPA 414 Query 411 QSTHMTQRDQQE--VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE---ISM 465 S H ++ Q+ V+ +F+ G ++VAT VA G+D+ V+ Y N + Sbjct 415 LSIHGDKQQQERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVINYDYPNNSEDYVHR 474 Query 466 VQARGRARADQSVYAFVATEGSRELKRELI 495 + GRA A + F T+ +++ R+L+ Sbjct 475 IGRTGRAGAKGTAITFFTTDNAKQ-ARDLV 503 >sp|A7EM88|FAL1_SCLS1 ATP-dependent RNA helicase fal1 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 GN=fal1 PE=3 SV=1 Length=399 Score = 40.0 bits (92), Expect = 0.067, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 3/86 (3%) Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 SS M Q+++ ++Q F+ G +L++T V G+D+ ++V+ Y L N + + Sbjct 292 SSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPVNRENYIHR 351 Query 469 RGRA-RADQSVYA--FVATEGSRELK 491 GR+ R + A FV +E R L+ Sbjct 352 IGRSGRFGRKGVAINFVTSEDVRILR 377 >sp|A6S4N4|FAL1_BOTFB ATP-dependent RNA helicase fal1 OS=Botryotinia fuckeliana (strain B05.10) OX=332648 GN=fal1 PE=3 SV=1 Length=399 Score = 40.0 bits (92), Expect = 0.067, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 3/86 (3%) Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 SS M Q+++ ++Q F+ G +L++T V G+D+ ++V+ Y L N + + Sbjct 292 SSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPVNRENYIHR 351 Query 469 RGRA-RADQSVYA--FVATEGSRELK 491 GR+ R + A FV +E R L+ Sbjct 352 IGRSGRFGRKGVAINFVTSEDVRILR 377 >sp|Q810A7|DDX42_MOUSE ATP-dependent RNA helicase DDX42 OS=Mus musculus OX=10090 GN=Ddx42 PE=1 SV=3 Length=929 Score = 40.4 bits (93), Expect = 0.067, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 35/69 (51%), Gaps = 1/69 (1%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR 473 M Q ++ +VI F+ + +LVAT VA GLDIP V+ Y + + + GR R Sbjct 532 MDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGR 591 Query 474 ADQSVYAFV 482 A + A+ Sbjct 592 AGEKGVAYT 600 >sp|Q879Y6|RHLB_XYLFT ATP-dependent RNA helicase RhlB OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) OX=183190 GN=rhlB PE=3 SV=1 Length=543 Score = 40.0 bits (92), Expect = 0.068, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 37/73 (51%), Gaps = 3/73 (4%) Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 S + QR ++ ++ +FQ G L +LVAT VA GL I N V Y L + V GR Sbjct 288 SGDVPQRKRETLLNRFQKGQLEILVATDVAARGLHIDGVNYVYNYDLPFDAEDYVHRIGR 347 Query 472 -AR--ADQSVYAF 481 AR AD +F Sbjct 348 TARLGADGDAISF 360 >sp|Q3JC03|UVRB_NITOC UvrABC system protein B OS=Nitrosococcus oceani (strain ATCC 19707 / BCRC 17464 / JCM 30415 / NCIMB 11848 / C-107) OX=323261 GN=uvrB PE=3 SV=1 Length=687 Score = 40.0 bits (92), Expect = 0.068, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 63/126 (50%), Gaps = 22/126 (17%) Query 352 EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ 411 ++L +I QR ++ R ++ T++ A L +L+Q + +R + L Sbjct 433 DLLSEIRQR---TAADERVLVTVLTKRMAEDLTQYLEQHE------VRVRYL-------- 475 Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMV 466 + + ++ E+I+ + G ++LV ++ EGLDIP ++V + G L +E S++ Sbjct 476 HSDIDTVERVEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLI 535 Query 467 QARGRA 472 Q GRA Sbjct 536 QTIGRA 541 >sp|Q3B8Q1|DDX21_RAT Nucleolar RNA helicase 2 OS=Rattus norvegicus OX=10116 GN=Ddx21 PE=2 SV=1 Length=782 Score = 40.4 bits (93), Expect = 0.069, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 19/110 (17%) Query 364 SSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQ 421 S + R IIF T++ A L Q I+ +QS H + Q+ ++ Sbjct 431 SGHQGRTIIFCETKKDAQELS---------QNTCIK--------QDAQSLHGDIPQKQRE 473 Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 ++ F++G +LVAT+VA GLDIP ++VV+ + S + GR Sbjct 474 ITLKGFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGR 523 >sp|A5DU73|PRP28_LODEL Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) OX=379508 GN=PRP28 PE=3 SV=1 Length=597 Score = 40.0 bits (92), Expect = 0.071, Method: Compositional matrix adjust. Identities = 39/155 (25%), Positives = 67/155 (43%), Gaps = 18/155 (12%) Query 331 FDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQ 390 D+ +L+T+ E+ +L L K++Q + + IIF + L L L+Q Sbjct 426 LDNIDQHFDYLSTYA-ESARLSKLIKVVQGHKRRNRNALVIIFANFKHVCDVLSLELEQN 484 Query 391 QGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHC 450 L V G+ SQ ++E ++ F+ +LVAT VA G+D+P+ Sbjct 485 NLLNVVI--------HGSKSQEA------REEALEDFRTHQAPILVATDVAARGIDVPNV 530 Query 451 NVVVRYGL---LTNEISMVQARGRARADQSVYAFV 482 ++V+ Y + I + GRA Y F+ Sbjct 531 SLVINYQMSKKFDEYIHRIGRTGRAGNLGESYTFL 565 >sp|O29889|XPB_ARCFU DNA 3'-5' translocase XPB OS=Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16) OX=224325 GN=xpb PE=1 SV=1 Length=452 Score = 40.0 bits (92), Expect = 0.071, Method: Compositional matrix adjust. Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 25/106 (24%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ L +IL+R + IIFTR H+ L++ I LI A Sbjct 316 KIRKLREILERH----RKDKIIIFTR-----HNELVY----------RISKVFLIPA--- 353 Query 410 SQSTHMTQRDQ-QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV 454 TH T R++ +E+++ F+ G +V++ V +EG+D+P NV V Sbjct 354 --ITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGV 397 >sp|Q88LF9|UVRB_PSEPK UvrABC system protein B OS=Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440) OX=160488 GN=uvrB PE=3 SV=1 Length=671 Score = 40.0 bits (92), Expect = 0.071, Method: Compositional matrix adjust. Identities = 20/56 (36%), Positives = 34/56 (61%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + GT ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 485 EIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 540 >sp|Q5BDW4|PRP5_EMENI Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=prp5 PE=3 SV=1 Length=1173 Score = 40.4 bits (93), Expect = 0.073, Method: Compositional matrix adjust. Identities = 41/148 (28%), Positives = 63/148 (43%), Gaps = 19/148 (13%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQK 426 R +IF +++A +LL L ++ G S H Q D+ I+ Sbjct 795 RSLIFVDRQEAADTLLRELMRK----------------GYPCMSIHGGKDQIDRDSTIED 838 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATE 485 F+ G +L+ATSVA GLD+ +VV Y + V GR RA + A Sbjct 839 FKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLT 898 Query 486 GSRELKRELINEALETLMEQAVAAVQKM 513 +E I +AL+ ++ AVQK+ Sbjct 899 EDQERYSVDIAKALKQSGQEVPEAVQKL 926 >sp|Q2H0R2|DBP10_CHAGB ATP-dependent RNA helicase DBP10 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=DBP10 PE=3 SV=1 Length=762 Score = 40.0 bits (92), Expect = 0.073, Method: Compositional matrix adjust. Identities = 32/116 (28%), Positives = 55/116 (47%), Gaps = 6/116 (5%) Query 375 RTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTL 432 + + + HS +++ + ++ + A LL AG S + + Q ++ + F+ G Sbjct 357 KEKPTEHSTIIFTATKHHVEYI---AHLLRHAGFSVSYIYGSLDQTARKIQVDNFRRGRT 413 Query 433 NLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGS 487 N+LV T VA G+DIP V+ Y V GR ARA Q +A+ +G+ Sbjct 414 NILVVTDVAARGIDIPVLANVINYDFPPQPKIFVHRVGRTARAGQRGWAYALLQGT 469 >sp|B4F1V3|RHLB_PROMH ATP-dependent RNA helicase RhlB OS=Proteus mirabilis (strain HI4320) OX=529507 GN=rhlB PE=3 SV=1 Length=432 Score = 40.0 bits (92), Expect = 0.074, Method: Compositional matrix adjust. Identities = 47/197 (24%), Positives = 79/197 (40%), Gaps = 31/197 (16%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +++ ++ R IIF T+ + W L R LL G Sbjct 243 KMRLLQTLIEEEWPE----RCIIFANTKHRCDDI--WAH----LAADGHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMV 466 + Q+ + +++ F G +++LVAT VA GL IP V Y L + + + Sbjct 289 ----DVPQKKRLRILEDFTQGNIDILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRI 344 Query 467 QARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQ 526 GRA + + E + L A+ET ++ A+ V K + A + DL Sbjct 345 GRTGRAGKSGNSISLACEEYALNLP------AIETYIQHAI-PVSKYNS---DALLTDLP 394 Query 527 QAALTKRAAQAAQRENQ 543 + R Q R N Sbjct 395 EPKRRHRPRQGQPRRNN 411 >sp|Q8CSV3|RECG_STAES ATP-dependent DNA helicase RecG OS=Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200) OX=176280 GN=recG PE=3 SV=1 Length=682 Score = 40.0 bits (92), Expect = 0.075, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 10/71 (14%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQAR 469 M+ D+ +V+QKF +++LV+T+V E G+++P+ ++ R+GL T + Q R Sbjct 514 MSAEDKDQVMQKFSKHEIDILVSTTVVEVGVNVPNATFMMIYDADRFGLST----LHQLR 569 Query 470 GR-ARADQSVY 479 GR R++ Y Sbjct 570 GRVGRSEHQSY 580 >sp|Q3KF38|UVRB_PSEPF UvrABC system protein B OS=Pseudomonas fluorescens (strain Pf0-1) OX=205922 GN=uvrB PE=3 SV=1 Length=671 Score = 40.0 bits (92), Expect = 0.076, Method: Compositional matrix adjust. Identities = 20/56 (36%), Positives = 34/56 (61%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + GT ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 485 EIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 540 >sp|Q4KF19|UVRB_PSEF5 UvrABC system protein B OS=Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5) OX=220664 GN=uvrB PE=3 SV=1 Length=671 Score = 40.0 bits (92), Expect = 0.077, Method: Compositional matrix adjust. Identities = 20/56 (36%), Positives = 34/56 (61%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + GT ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 485 EIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 540 >sp|P25888|RHLE_ECOLI ATP-dependent RNA helicase RhlE OS=Escherichia coli (strain K12) OX=83333 GN=rhlE PE=1 SV=3 Length=454 Score = 39.7 bits (91), Expect = 0.080, Method: Compositional matrix adjust. Identities = 36/139 (26%), Positives = 60/139 (43%), Gaps = 17/139 (12%) Query 356 KILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHM 415 ++L N + ++FTRT+ A+ L L + G+++ I GN SQ Sbjct 234 ELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKD-GIRSAAIH-------GNKSQGA-- 283 Query 416 TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT---NEISMVQARGRA 472 + + F+ G + +LVAT +A GLDI VV Y L + + + GRA Sbjct 284 ----RTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRA 339 Query 473 RADQSVYAFVATEGSRELK 491 A + V + + L+ Sbjct 340 AATGEALSLVCVDEHKLLR 358 >sp|Q6CEB8|DRS1_YARLI ATP-dependent RNA helicase DRS1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DRS1 PE=3 SV=1 Length=753 Score = 40.0 bits (92), Expect = 0.082, Method: Compositional matrix adjust. Identities = 40/144 (28%), Positives = 61/144 (42%), Gaps = 18/144 (13%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 R IIF +++AH L + L GL + +R L GA ++Q + + I F+ Sbjct 500 RTIIFVARKETAHRLRIML----GL--LGVRIGELHGA--------LSQEQRLQSITAFK 545 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR----ARADQSVYAFVAT 484 + +LV T +A GLDIP VV Y + + GR R +S+ Sbjct 546 KLEVPILVCTDLASRGLDIPKIECVVNYDMPQTHAVYLHRVGRTARAGREGRSITLVGEA 605 Query 485 EGSRELKRELINEALETLMEQAVA 508 R + RE I E+ +AV Sbjct 606 AADRAIVREAIKSVSESKQGKAVG 629 >sp|Q8ENJ5|UVRB_OCEIH UvrABC system protein B OS=Oceanobacillus iheyensis (strain DSM 14371 / CIP 107618 / JCM 11309 / KCTC 3954 / HTE831) OX=221109 GN=uvrB PE=3 SV=1 Length=660 Score = 40.0 bits (92), Expect = 0.083, Method: Compositional matrix adjust. Identities = 41/177 (23%), Positives = 77/177 (44%), Gaps = 52/177 (29%) Query 331 FDDRKNELAHLAT--------HGPE------------NPKLE----------MLEKILQR 360 F+D+ +L +++ H PE +PK+E ++E+I R Sbjct 382 FEDKTKQLVYVSATPGPYELEHSPEMTEQIIRPTGLLDPKVEVRPIEGQIDNLIEEIRIR 441 Query 361 QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ 420 + R +I T T++ + L +L++ IG + + + ++ Sbjct 442 M---EKNERVLITTLTKKMSEDLTDYLKE--------------IGMKVAYLHSEIKTLER 484 Query 421 QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 EVI+ + G ++LV ++ EGLDIP ++V + G L +E S++Q GRA Sbjct 485 IEVIRDLRVGKFDVLVGINLLREGLDIPEVSLVSILDADKEGFLRSERSLIQTMGRA 541 >sp|Q5N7W4|RH30_ORYSJ DEAD-box ATP-dependent RNA helicase 30 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0911100 PE=2 SV=2 Length=666 Score = 40.0 bits (92), Expect = 0.085, Method: Compositional matrix adjust. Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 12/102 (12%) Query 417 QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT---NEISMVQARGRAR 473 Q ++ V+ +F+ G ++ AT VA GLD+ V+ + T + I + GRA Sbjct 532 QAERDYVLAEFKSGKSPIMAATDVAARGLDVKDIKCVINFDFPTTLEDYIHRIGRTGRAG 591 Query 474 ADQSVYAFVA---TEGSRELKR------ELINEALETLMEQA 506 A + + F + SR L + +++N ALE++ + A Sbjct 592 ASGTAFTFFTLSNAKFSRNLVKILREAGQVVNPALESMAKSA 633 >sp|Q9UHL0|DDX25_HUMAN ATP-dependent RNA helicase DDX25 OS=Homo sapiens OX=9606 GN=DDX25 PE=1 SV=2 Length=483 Score = 39.7 bits (91), Expect = 0.087, Method: Compositional matrix adjust. Identities = 26/97 (27%), Positives = 45/97 (46%), Gaps = 14/97 (14%) Query 362 FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ 421 + S + IIF +TR++A L + + Q G S S +T + Sbjct 333 YGSITIGQAIIFCQTRRNAKWLTVEMIQD--------------GHQVSLLSGELTVEQRA 378 Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL 458 +IQ+F+DG +L+ T+V G+D+ +VV + L Sbjct 379 SIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDL 415 >sp|B3EFX1|UVRB_CHLL2 UvrABC system protein B OS=Chlorobium limicola (strain DSM 245 / NBRC 103803 / 6330) OX=290315 GN=uvrB PE=3 SV=1 Length=684 Score = 40.0 bits (92), Expect = 0.087, Method: Compositional matrix adjust. Identities = 37/146 (25%), Positives = 71/146 (49%), Gaps = 26/146 (18%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRAR 473 ++ +++++ + G +++LV ++ EGLD+P ++V + G L N S++Q GRA Sbjct 488 ERMQILRELRTGEIDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNTRSLMQIAGRAA 547 Query 474 ADQS----VYAFVATEGSREL-----KRELINEALETLMEQAVAAVQKMDQAEYQAKIRD 524 + +YA V T RE+ +R I +A E + Q+ I+ Sbjct 548 RNSEGFVVLYADVLTRSIREVLDETSRRRKIQQAYNE--EHGIVP---------QSIIKS 596 Query 525 LQQAALTKRAAQAAQRENQRQQFPVE 550 ++Q T A A +R +R++F +E Sbjct 597 VEQVLNTTGVADAEER-YRRKRFGLE 621 >sp|Q64060|DDX4_RAT Probable ATP-dependent RNA helicase DDX4 OS=Rattus norvegicus OX=10116 GN=Ddx4 PE=1 SV=1 Length=713 Score = 40.0 bits (92), Expect = 0.088, Method: Compositional matrix adjust. Identities = 32/130 (25%), Positives = 57/130 (44%), Gaps = 17/130 (13%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 R ++F T++ A + +L Q++ + T I QR++++ + F+ Sbjct 527 RPMVFVETKKKADFIATFLCQEK-ISTTSIHGD-------------REQREREQALGDFR 572 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGRARADQSVYAFVATE 485 G +LVATSVA GLDI + V+ + L + + + GR +F TE Sbjct 573 CGKCPVLVATSVAARGLDIENVQHVINFNLPSTIDEYVHRIGRTGRCGNTGRAISFFDTE 632 Query 486 GSRELKRELI 495 L + L+ Sbjct 633 SDNHLAQPLV 642 >sp|B8CHZ1|RHLB_SHEPW ATP-dependent RNA helicase RhlB OS=Shewanella piezotolerans (strain WP3 / JCM 13877) OX=225849 GN=rhlB PE=3 SV=1 Length=437 Score = 39.7 bits (91), Expect = 0.091, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 49/109 (45%), Gaps = 15/109 (14%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 + I+F+ T+ S + WL+ R LL G + Q+ + ++++F Sbjct 258 KAIVFSNTKHSCEKVWSWLEGDGH------RVGLLTG--------DVPQKKRLRILEQFT 303 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQ 476 G +++LVAT VA GL I + V Y L + V GR RA Q Sbjct 304 SGDIDVLVATDVAARGLHIADVSHVYNYDLPDDCEDYVHRIGRTGRAGQ 352 >sp|Q92841|DDX17_HUMAN Probable ATP-dependent RNA helicase DDX17 OS=Homo sapiens OX=9606 GN=DDX17 PE=1 SV=2 Length=729 Score = 39.7 bits (91), Expect = 0.091, Method: Compositional matrix adjust. Identities = 30/98 (31%), Positives = 49/98 (50%), Gaps = 9/98 (9%) Query 416 TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA 474 +Q ++ V+ +F+ G +L+AT VA GLD+ V+ Y + V GR AR+ Sbjct 453 SQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARS 512 Query 475 DQ--SVYAFVATEGSRELKRELINEALETLMEQAVAAV 510 + Y F T G+ + RELI ++E+A A+ Sbjct 513 TNKGTAYTFF-TPGNLKQARELIK-----VLEEANQAI 544 >sp|A3LSJ2|DBP6_PICST ATP-dependent RNA helicase DBP6 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) OX=322104 GN=DBP6 PE=3 SV=2 Length=591 Score = 39.7 bits (91), Expect = 0.092, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 58/122 (48%), Gaps = 8/122 (7%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 +IFT++ +++ L L+ G + + I NS+ + + ++++ F Sbjct 429 LIFTKSNEASIRLCKLLELMFG----KLHPSMNIAYINSTNNKSAIR---TKILKDFSTQ 481 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRE 489 +N+LVAT + G+DI V+ Y L + V GR ARA+Q+ +A+ G E Sbjct 482 KINILVATDLIARGIDILSITDVINYDLPNSSREYVHRVGRTARANQTGHAYTLCFGKGE 541 Query 490 LK 491 K Sbjct 542 AK 543 >sp|Q6CJV1|DRS1_KLULA ATP-dependent RNA helicase DRS1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=DRS1 PE=3 SV=1 Length=748 Score = 39.7 bits (91), Expect = 0.092, Method: Compositional matrix adjust. Identities = 35/150 (23%), Positives = 67/150 (45%), Gaps = 16/150 (11%) Query 358 LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ 417 L R+ +++ R ++F +++AH L + L L+G +TQ Sbjct 472 LIRKLDNTSQKRIVVFVARKETAHKLRIVLG--------------LLGMQVGELHGSLTQ 517 Query 418 RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL-LTNEISMVQARGRARADQ 476 + + + F+ + +L+ T +A GLDIP VV+ + + T EI + + ARA + Sbjct 518 EQRLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGR 577 Query 477 SVYAFVATEGSRELKRELINEALETLMEQA 506 + V G R ++ A+ ++ E A Sbjct 578 EGRS-VTFVGESSQDRSIVRSAIRSVEENA 606 >sp|P72174|UVRB_PSEAE UvrABC system protein B OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=uvrB PE=3 SV=2 Length=670 Score = 39.7 bits (91), Expect = 0.093, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 22/126 (17%) Query 352 EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ 411 ++L +I QR + R ++ T T++ A L +L D+R + L Sbjct 432 DLLSQIRQR---VAKDERVLVTTLTKRMAEDLTDYLGDH------DVRVRYL-------- 474 Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMV 466 + + ++ E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++ Sbjct 475 HSDIDTVERVEIIRDLRAGAFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLI 534 Query 467 QARGRA 472 Q GRA Sbjct 535 QTIGRA 540 >sp|Q501J6|DDX17_MOUSE Probable ATP-dependent RNA helicase DDX17 OS=Mus musculus OX=10090 GN=Ddx17 PE=1 SV=1 Length=650 Score = 39.7 bits (91), Expect = 0.093, Method: Compositional matrix adjust. Identities = 30/98 (31%), Positives = 49/98 (50%), Gaps = 9/98 (9%) Query 416 TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA 474 +Q ++ V+ +F+ G +L+AT VA GLD+ V+ Y + V GR AR+ Sbjct 374 SQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARS 433 Query 475 DQ--SVYAFVATEGSRELKRELINEALETLMEQAVAAV 510 + Y F T G+ + RELI ++E+A A+ Sbjct 434 TNKGTAYTFF-TPGNLKQARELIK-----VLEEANQAI 465 >sp|Q5N3H1|UVRB_SYNP6 UvrABC system protein B OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=uvrB PE=3 SV=1 Length=666 Score = 39.7 bits (91), Expect = 0.093, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E++Q ++G ++L+ ++ EGLD+P ++V + G L E S++Q GRA Sbjct 485 EILQDLRNGDFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRTERSLIQTIGRA 540 >sp|Q31QS4|UVRB_SYNE7 UvrABC system protein B OS=Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805) OX=1140 GN=uvrB PE=3 SV=1 Length=666 Score = 39.7 bits (91), Expect = 0.093, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E++Q ++G ++L+ ++ EGLD+P ++V + G L E S++Q GRA Sbjct 485 EILQDLRNGDFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRTERSLIQTIGRA 540 >sp|Q41382|RH7_SPIOL DEAD-box ATP-dependent RNA helicase 7 OS=Spinacia oleracea OX=3562 GN=RH7 PE=2 SV=1 Length=685 Score = 39.7 bits (91), Expect = 0.094, Method: Compositional matrix adjust. Identities = 38/142 (27%), Positives = 65/142 (46%), Gaps = 25/142 (18%) Query 318 TQILCAERRLLALFDDRKNELA----HLATHGPENPKLEMLEKILQRQFSSSNSPRGIIF 373 T+ L + ++ + L D+K + + H+ + + +++ I+ R + S R IIF Sbjct 311 TRFLKSAKKTVDLVSDQKMKASISVRHIVIPCSASARPDLIPDII-RCYGSGG--RSIIF 367 Query 374 TRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN 433 T T++SA L A LL GA TQR + ++ F+ G Sbjct 368 TETKESASQL----------------AGLLTGARPLHGDIQQTQR--EVTLKGFRTGKFM 409 Query 434 LLVATSVAEEGLDIPHCNVVVR 455 LVAT+VA GLDI ++++ Sbjct 410 TLVATNVAARGLDINDVQLIIQ 431 >sp|B6EGH8|UVRB_ALISL UvrABC system protein B OS=Aliivibrio salmonicida (strain LFI1238) OX=316275 GN=uvrB PE=3 SV=1 Length=676 Score = 39.7 bits (91), Expect = 0.095, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 18/96 (19%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA---- 472 E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++QA GRA Sbjct 488 EIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQAIGRAARNL 547 Query 473 ------RADQSVYAFVATEGSRELKRE---LINEAL 499 AD+ + G E +RE L NEAL Sbjct 548 EGKAILYADRITGSMEKAIGETERRREKQILHNEAL 583 >sp|Q7M806|UVRB_WOLSU UvrABC system protein B OS=Wolinella succinogenes (strain ATCC 29543 / DSM 1740 / CCUG 13145 / JCM 31913 / LMG 7466 / NCTC 11488 / FDC 602W) OX=273121 GN=uvrB PE=3 SV=1 Length=658 Score = 39.7 bits (91), Expect = 0.095, Method: Compositional matrix adjust. Identities = 18/59 (31%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ ++I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 486 ERNQIIRGLRTGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTMGRA 544 >sp|Q031G7|UVRB_LACLS UvrABC system protein B OS=Lactococcus lactis subsp. cremoris (strain SK11) OX=272622 GN=uvrB PE=3 SV=1 Length=692 Score = 39.7 bits (91), Expect = 0.095, Method: Compositional matrix adjust. Identities = 30/123 (24%), Positives = 61/123 (50%), Gaps = 13/123 (11%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRAR 473 ++ E+I+ + G ++LV ++ EG+D+P ++V + G L NE ++Q GRA Sbjct 489 ERTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAA 548 Query 474 ADQSVYAFVATEGSREL------KRELINEALETLME-QAVAAVQKMDQA-EYQAKIRDL 525 + + + ++ ++ L +E+++ T E Q + M A + A+ RD+ Sbjct 549 RNSEGHVILYSDMAKALDENDPADKEILDSGYYTEYEGQKYKITRSMKHAMDETARRRDI 608 Query 526 QQA 528 Q A Sbjct 609 QMA 611 >sp|Q10MH8|RH24_ORYSJ DEAD-box ATP-dependent RNA helicase 24 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0308500 PE=2 SV=1 Length=770 Score = 39.7 bits (91), Expect = 0.096, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 12/81 (15%) Query 407 GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM- 465 G+ Q++ M E +QKF+ G ++LVAT VA GLDI VV + + E+ M Sbjct 496 GDKDQASRM------ETLQKFKSGVYHVLVATDVAARGLDIKSIKTVVNFD-IAKEMDMH 548 Query 466 ---VQARGRA-RADQSVYAFV 482 + GRA D + Y + Sbjct 549 IHRIGRTGRAGDKDGTAYTLI 569 >sp|Q75C39|DBP5_EREGS ATP-dependent RNA helicase DBP5 OS=Eremothecium gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=DBP5 PE=3 SV=2 Length=466 Score = 39.7 bits (91), Expect = 0.096, Method: Compositional matrix adjust. Identities = 28/88 (32%), Positives = 46/88 (52%), Gaps = 14/88 (16%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 IIF +T+Q+A+ L L+++ G Q + L QS D+ +I F++G Sbjct 319 IIFVQTKQTANMLYTELKRE-GHQVSILHGDL--------QSA-----DRDRLIGDFREG 364 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGL 458 +L+ T+V G+DIP ++VV Y L Sbjct 365 RSKVLITTNVLARGIDIPTVSMVVNYDL 392 >sp|Q49VV6|UVRB_STAS1 UvrABC system protein B OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41) OX=342451 GN=uvrB PE=3 SV=1 Length=660 Score = 39.7 bits (91), Expect = 0.098, Method: Compositional matrix adjust. Identities = 20/56 (36%), Positives = 35/56 (63%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + GT +++V ++ EG+DIP ++VV + G L ++ S+VQ GRA Sbjct 487 EIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSQRSLVQTIGRA 542 >sp|B9MS82|UVRB_CALBD UvrABC system protein B OS=Caldicellulosiruptor bescii (strain ATCC BAA-1888 / DSM 6725 / KCTC 15123 / Z-1320) OX=521460 GN=uvrB PE=3 SV=1 Length=661 Score = 39.7 bits (91), Expect = 0.10, Method: Compositional matrix adjust. Identities = 28/109 (26%), Positives = 55/109 (50%), Gaps = 19/109 (17%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 R ++ T T++ A SL +L+ V IR + + + + ++ ++I+ + Sbjct 446 RVLVTTLTKKMAESLTEYLKD------VGIRVRYM--------HSDIDTIERMQIIRDLR 491 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 492 LGKFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRA 540 >sp|A5E058|PRP5_LODEL Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) OX=379508 GN=PRP5 PE=3 SV=1 Length=994 Score = 39.7 bits (91), Expect = 0.11, Method: Compositional matrix adjust. Identities = 39/149 (26%), Positives = 68/149 (46%), Gaps = 20/149 (13%) Query 348 NPKLEMLEKILQRQFS-SSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA 406 N K++ LE IL R F N+ + ++F + A L+ L ++ I + G Sbjct 624 NHKIQKLEDILSRFFDLGKNTGKVLVFVEKQTDADKLVSVLLKKA------IPCIAIHGG 677 Query 407 GNSSQSTHMTQRDQQEVIQKFQD--GTLNLLVATSVAEEGLDIPHCNVVVRY---GLLTN 461 + Q D++ I++F D +N+L+ATS+A GLD+ + ++VV + L + Sbjct 678 KD--------QIDRKHAIREFSDDQSGINVLIATSIAARGLDVRNLDLVVNFEPPSHLED 729 Query 462 EISMVQARGRARADQSVYAFVATEGSREL 490 + V GRA FV +E+ Sbjct 730 YVHRVGRTGRAGKHGEAITFVDNTQEKEI 758 >sp|A4W1F7|UVRB_STRS2 UvrABC system protein B OS=Streptococcus suis (strain 98HAH33) OX=391296 GN=uvrB PE=3 SV=1 Length=661 Score = 39.7 bits (91), Expect = 0.11, Method: Compositional matrix adjust. Identities = 31/134 (23%), Positives = 59/134 (44%), Gaps = 23/134 (17%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 R I T T++ A L +L++ +G + + ++ E+I+ + Sbjct 452 RTFITTLTKKMAEDLTDYLKE--------------MGVKVKYMHSDIKTLERTEIIRDLR 497 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRARADQS----VY 479 G ++L+ ++ EG+D+P ++V + G L NE ++Q GRA + +Y Sbjct 498 LGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSEGHVIMY 557 Query 480 AFVATEGSRELKRE 493 A TE R+ E Sbjct 558 ADKVTESMRKAMEE 571 >sp|Q6MEV1|UVRB_PARUW UvrABC system protein B OS=Protochlamydia amoebophila (strain UWE25) OX=264201 GN=uvrB PE=3 SV=1 Length=673 Score = 39.7 bits (91), Expect = 0.11, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 6/79 (8%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGR-ARAD 475 ++I+ + G ++LV ++ EGLDIP ++V + G L +E S++Q GR AR Sbjct 489 QIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSETSLIQTCGRAARNA 548 Query 476 QSVYAFVATEGSRELKREL 494 + A + ++ +KR L Sbjct 549 EGRVIMYADKITKSIKRTL 567 >sp|Q7ZVA6|IF4A3_DANRE Eukaryotic initiation factor 4A-III OS=Danio rerio OX=7955 GN=eif4a3 PE=2 SV=1 Length=406 Score = 39.3 bits (90), Expect = 0.11, Method: Compositional matrix adjust. Identities = 17/64 (27%), Positives = 36/64 (56%), Gaps = 0/64 (0%) Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 SS M Q++++ ++++F+ G +L++T V GLD+ ++++ Y L N + Sbjct 300 SSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVSQVSLIINYDLPNNRELYIHR 359 Query 469 RGRA 472 GR+ Sbjct 360 IGRS 363 >sp|Q9Y7T7|PRP28_SCHPO Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=prp28 PE=3 SV=1 Length=662 Score = 39.7 bits (91), Expect = 0.11, Method: Compositional matrix adjust. Identities = 19/75 (25%), Positives = 41/75 (55%), Gaps = 3/75 (4%) Query 416 TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGRA 472 +Q ++ I++ ++ T ++LVAT +A G+DIP+ ++V+ Y + + + + GRA Sbjct 551 SQEQRERAIEQLRNKTADILVATDIAGRGIDIPNVSLVLNYNMAKSIEDYTHRIGRTGRA 610 Query 473 RADQSVYAFVATEGS 487 + F+ E + Sbjct 611 GKSGTAITFLGPEDT 625 >sp|Q5WDG7|UVRB_SHOC1 UvrABC system protein B OS=Shouchella clausii (strain KSM-K16) OX=66692 GN=uvrB PE=3 SV=1 Length=660 Score = 39.7 bits (91), Expect = 0.11, Method: Compositional matrix adjust. Identities = 19/56 (34%), Positives = 34/56 (61%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I++ + GT ++L+ ++ EG+DIP ++V + G L E S++Q GRA Sbjct 486 EIIRQLRLGTFDVLIGINLLREGIDIPEVSLVAILDADKEGFLRAERSLIQTIGRA 541 >sp|A4REU9|MAK5_PYRO7 ATP-dependent RNA helicase MAK5 OS=Pyricularia oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 GN=MAK5 PE=3 SV=2 Length=760 Score = 39.7 bits (91), Expect = 0.11, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 54/113 (48%), Gaps = 18/113 (16%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF- 427 R ++FT + S L LQQ L + + +Q M Q+ + +++F Sbjct 479 RTLVFTNSISSVRRLTPMLQQLT-LPVIALHSQ-------------MIQKARLRSVERFT 524 Query 428 --QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQS 477 + G+ ++L+AT VA GLDI +VV+ Y + + V GR ARAD S Sbjct 525 SSKPGSASILIATDVAARGLDIRGIDVVIHYHVPRTADAYVHRSGRTARADSS 577 >sp|Q0UAT0|FAL1_PHANO ATP-dependent RNA helicase FAL1 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) OX=321614 GN=FAL1 PE=3 SV=3 Length=374 Score = 39.3 bits (90), Expect = 0.11, Method: Compositional matrix adjust. Identities = 18/64 (28%), Positives = 35/64 (55%), Gaps = 0/64 (0%) Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 SS M QR++ ++Q F+ +L++T V G+D+ ++V+ Y L +N + + Sbjct 267 SSMHGDMPQRERDSIMQDFRQANSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHR 326 Query 469 RGRA 472 GR+ Sbjct 327 IGRS 330 >sp|Q5ADL0|PRP5_CANAL Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=PRP5 PE=3 SV=1 Length=884 Score = 39.7 bits (91), Expect = 0.12, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 44/79 (56%), Gaps = 5/79 (6%) Query 417 QRDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGR 471 Q D++ I++F D +N+L+ATS+A GLD+ + +V+ + + + + V GR Sbjct 590 QMDRKYAIKEFASMDSGINILIATSIAARGLDVRNLGLVINFDPPNHMEDYVHRVGRTGR 649 Query 472 ARADQSVYAFVATEGSREL 490 A A + FV++ +E+ Sbjct 650 AGAKGNAITFVSSSQPKEV 668 >sp|P32639|BRR2_YEAST Pre-mRNA-splicing helicase BRR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=BRR2 PE=1 SV=2 Length=2163 Score = 39.7 bits (91), Expect = 0.12, Method: Compositional matrix adjust. Identities = 49/186 (26%), Positives = 77/186 (41%), Gaps = 30/186 (16%) Query 3 LRSYQWEVIMPALEG-KNIIIWLPTGAGKTRAAA----------YVAKRHLETVDGAKVV 51 L Q +V A EG N++I PTG+GKT A Y K + K+V Sbjct 499 LNPIQSKVFHAAFEGDSNMLICAPTGSGKTNIALLTVLKALSHHYNPKTKKLNLSAFKIV 558 Query 52 VLVNRVHLVTQHGEEF-RRMLDGRWTVTTLSGDMGPRAGFGHLARCH----DLLICTAEL 106 + LV + EF RR+ V L+GD L+R +L+ T E Sbjct 559 YIAPLKALVQEQVREFQRRLAFLGIKVAELTGD-------SRLSRKQIDETQVLVSTPEK 611 Query 107 LQMALTSPEEEEHVELTVFSLIVVDECHHTHKD---TVYNVIMSQYLELKLQRAQPLPQV 163 + + VEL L+++DE H H D + +++ + K Q P++ Sbjct 612 WDITTRNSNNLAIVELV--RLLIIDEIHLLHDDRGPVLESIVARTFWASKY--GQEYPRI 667 Query 164 LGLTAS 169 +GL+A+ Sbjct 668 IGLSAT 673 >sp|Q8PRZ9|UVRB_METMA UvrABC system protein B OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) OX=192952 GN=uvrB PE=3 SV=1 Length=670 Score = 39.3 bits (90), Expect = 0.12, Method: Compositional matrix adjust. Identities = 32/132 (24%), Positives = 63/132 (48%), Gaps = 25/132 (19%) Query 351 LEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSS 410 ++ + KI++R R ++ T T++ A L +L + + I+A+ L Sbjct 455 MQEIRKIVER------GDRALVTTLTKKLAEELTEFLAKNE------IKARYL------- 495 Query 411 QSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV-----VRYGLLTNEISM 465 + + ++ E+I++ + G ++LV ++ EGLDIP + + G L N S+ Sbjct 496 -HSDIKTIERTEIIRELRLGKFDVLVGINLLREGLDIPEVGFIGILDADKEGFLRNSKSL 554 Query 466 VQARGRARADQS 477 +Q GRA + S Sbjct 555 IQIIGRAARNSS 566 >sp|B8HQA9|UVRB_CYAP4 UvrABC system protein B OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=395961 GN=uvrB PE=3 SV=1 Length=665 Score = 39.3 bits (90), Expect = 0.12, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+++ + GT ++L+ ++ EGLD+P ++V + G L E S++Q GRA Sbjct 485 EILEDLRKGTFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRA 540 >sp|C1CKX8|UVRB_STRZP UvrABC system protein B OS=Streptococcus pneumoniae (strain P1031) OX=488223 GN=uvrB PE=3 SV=1 Length=662 Score = 39.3 bits (90), Expect = 0.12, Method: Compositional matrix adjust. Identities = 39/178 (22%), Positives = 76/178 (43%), Gaps = 10/178 (6%) Query 370 GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD 429 G I R ++ + + L ++ D ++ I +R E+I+ + Sbjct 441 GEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLER--TEIIRDLRL 498 Query 430 GTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGR-ARADQSVYAFVA 483 G ++LV ++ EG+D+P ++V + G L NE ++Q GR AR + A Sbjct 499 GVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSEGHVIMYA 558 Query 484 TEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRE 541 ++ ++R + A ++ A + + +IRDL A+TK A+ +E Sbjct 559 DTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDL--IAVTKAVAKEEDKE 614 >sp|Q8DPK7|UVRB_STRR6 UvrABC system protein B OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) OX=171101 GN=uvrB PE=3 SV=1 Length=662 Score = 39.3 bits (90), Expect = 0.12, Method: Compositional matrix adjust. Identities = 32/129 (25%), Positives = 62/129 (48%), Gaps = 8/129 (6%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGR-A 472 ++ E+I+ + G ++LV ++ EG+D+P ++V + G L NE ++Q GR A Sbjct 488 ERTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAA 547 Query 473 RADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTK 532 R + A ++ ++R + A ++ A + + +IRDL A+TK Sbjct 548 RNSEGHVIMYADTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDL--IAVTK 605 Query 533 RAAQAAQRE 541 A+ +E Sbjct 606 AVAKEEDKE 614 >sp|Q04K81|UVRB_STRP2 UvrABC system protein B OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) OX=373153 GN=uvrB PE=3 SV=1 Length=662 Score = 39.3 bits (90), Expect = 0.12, Method: Compositional matrix adjust. Identities = 32/129 (25%), Positives = 62/129 (48%), Gaps = 8/129 (6%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGR-A 472 ++ E+I+ + G ++LV ++ EG+D+P ++V + G L NE ++Q GR A Sbjct 488 ERTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAA 547 Query 473 RADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTK 532 R + A ++ ++R + A ++ A + + +IRDL A+TK Sbjct 548 RNSEGHVIMYADTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDL--IAVTK 605 Query 533 RAAQAAQRE 541 A+ +E Sbjct 606 AVAKEEDKE 614 >sp|Q7VXH4|UVRB_BORPE UvrABC system protein B OS=Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251) OX=257313 GN=uvrB PE=3 SV=1 Length=678 Score = 39.3 bits (90), Expect = 0.12, Method: Compositional matrix adjust. Identities = 20/56 (36%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + G ++LV ++ EGLDIP ++V + G L +E S++Q GRA Sbjct 495 EIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA 550 >sp|C1C7L7|UVRB_STRP7 UvrABC system protein B OS=Streptococcus pneumoniae (strain 70585) OX=488221 GN=uvrB PE=3 SV=1 Length=662 Score = 39.3 bits (90), Expect = 0.12, Method: Compositional matrix adjust. Identities = 39/178 (22%), Positives = 76/178 (43%), Gaps = 10/178 (6%) Query 370 GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD 429 G I R ++ + + L ++ D ++ I +R E+I+ + Sbjct 441 GEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLER--TEIIRDLRL 498 Query 430 GTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGR-ARADQSVYAFVA 483 G ++LV ++ EG+D+P ++V + G L NE ++Q GR AR + A Sbjct 499 GVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSEGHVIMYA 558 Query 484 TEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRE 541 ++ ++R + A ++ A + + +IRDL A+TK A+ +E Sbjct 559 DTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDL--IAVTKAVAKEEDKE 614 >sp|B5E4X3|UVRB_STRP4 UvrABC system protein B OS=Streptococcus pneumoniae serotype 19F (strain G54) OX=512566 GN=uvrB PE=3 SV=1 Length=662 Score = 39.3 bits (90), Expect = 0.12, Method: Compositional matrix adjust. Identities = 39/178 (22%), Positives = 76/178 (43%), Gaps = 10/178 (6%) Query 370 GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD 429 G I R ++ + + L ++ D ++ I +R E+I+ + Sbjct 441 GEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLER--TEIIRDLRL 498 Query 430 GTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGR-ARADQSVYAFVA 483 G ++LV ++ EG+D+P ++V + G L NE ++Q GR AR + A Sbjct 499 GVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSEGHVIMYA 558 Query 484 TEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRE 541 ++ ++R + A ++ A + + +IRDL A+TK A+ +E Sbjct 559 DTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDL--IAVTKAVAKEEDKE 614 >sp|Q2L244|UVRB_BORA1 UvrABC system protein B OS=Bordetella avium (strain 197N) OX=360910 GN=uvrB PE=3 SV=1 Length=676 Score = 39.3 bits (90), Expect = 0.12, Method: Compositional matrix adjust. Identities = 20/56 (36%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + G ++LV ++ EGLDIP ++V + G L +E S++Q GRA Sbjct 495 EIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA 550 >sp|C1CEJ5|UVRB_STRZJ UvrABC system protein B OS=Streptococcus pneumoniae (strain JJA) OX=488222 GN=uvrB PE=3 SV=1 Length=662 Score = 39.3 bits (90), Expect = 0.12, Method: Compositional matrix adjust. Identities = 39/178 (22%), Positives = 76/178 (43%), Gaps = 10/178 (6%) Query 370 GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD 429 G I R ++ + + L ++ D ++ I +R E+I+ + Sbjct 441 GEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLER--TEIIRDLRL 498 Query 430 GTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGR-ARADQSVYAFVA 483 G ++LV ++ EG+D+P ++V + G L NE ++Q GR AR + A Sbjct 499 GVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSEGHVIMYA 558 Query 484 TEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRE 541 ++ ++R + A ++ A + + +IRDL A+TK A+ +E Sbjct 559 DTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDL--IAVTKAVAKEEDKE 614 >sp|B2IPP4|UVRB_STRPS UvrABC system protein B OS=Streptococcus pneumoniae (strain CGSP14) OX=516950 GN=uvrB PE=3 SV=1 Length=662 Score = 39.3 bits (90), Expect = 0.12, Method: Compositional matrix adjust. Identities = 39/178 (22%), Positives = 76/178 (43%), Gaps = 10/178 (6%) Query 370 GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD 429 G I R ++ + + L ++ D ++ I +R E+I+ + Sbjct 441 GEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLER--TEIIRDLRL 498 Query 430 GTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGR-ARADQSVYAFVA 483 G ++LV ++ EG+D+P ++V + G L NE ++Q GR AR + A Sbjct 499 GVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSEGHVIMYA 558 Query 484 TEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRE 541 ++ ++R + A ++ A + + +IRDL A+TK A+ +E Sbjct 559 DTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDL--IAVTKAVAKEEDKE 614 >sp|Q54986|UVRB_STRPN UvrABC system protein B OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) OX=170187 GN=uvrB PE=3 SV=2 Length=662 Score = 39.3 bits (90), Expect = 0.12, Method: Compositional matrix adjust. Identities = 39/178 (22%), Positives = 76/178 (43%), Gaps = 10/178 (6%) Query 370 GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD 429 G I R ++ + + L ++ D ++ I +R E+I+ + Sbjct 441 GEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLER--TEIIRDLRL 498 Query 430 GTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGR-ARADQSVYAFVA 483 G ++LV ++ EG+D+P ++V + G L NE ++Q GR AR + A Sbjct 499 GVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSEGHVIMYA 558 Query 484 TEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRE 541 ++ ++R + A ++ A + + +IRDL A+TK A+ +E Sbjct 559 DTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDL--IAVTKAVAKEEDKE 614 >sp|B8ZJQ9|UVRB_STRPJ UvrABC system protein B OS=Streptococcus pneumoniae (strain ATCC 700669 / Spain 23F-1) OX=561276 GN=uvrB PE=3 SV=1 Length=662 Score = 39.3 bits (90), Expect = 0.12, Method: Compositional matrix adjust. Identities = 39/178 (22%), Positives = 76/178 (43%), Gaps = 10/178 (6%) Query 370 GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD 429 G I R ++ + + L ++ D ++ I +R E+I+ + Sbjct 441 GEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLER--TEIIRDLRL 498 Query 430 GTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGR-ARADQSVYAFVA 483 G ++LV ++ EG+D+P ++V + G L NE ++Q GR AR + A Sbjct 499 GVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSEGHVIMYA 558 Query 484 TEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRE 541 ++ ++R + A ++ A + + +IRDL A+TK A+ +E Sbjct 559 DTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDL--IAVTKAVAKEEDKE 614 >sp|Q2UH00|PRP28_ASPOR Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=prp28 PE=3 SV=1 Length=803 Score = 39.3 bits (90), Expect = 0.13, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 56/107 (52%), Gaps = 8/107 (7%) Query 407 GNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 G SS + H TQ ++ + ++G ++LVAT +A G+D+P ++V+ + + T S Sbjct 666 GFSSVTLHGSKTQEQREAALASVRNGQTDVLVATDLAGRGIDVPDVSLVINFNMATTIES 725 Query 465 MVQARGR-ARADQSVYA--FVATEGSR---ELKRELINEALETLMEQ 505 GR RA +S A F+ E + +LK+ ++ ++ L E+ Sbjct 726 YTHRIGRTGRAGKSGVAITFLGNEDTDVMYDLKQMIMKSSISRLPEE 772 >sp|Q7WK66|UVRB_BORBR UvrABC system protein B OS=Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50) OX=257310 GN=uvrB PE=3 SV=1 Length=675 Score = 39.3 bits (90), Expect = 0.13, Method: Compositional matrix adjust. Identities = 20/56 (36%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + G ++LV ++ EGLDIP ++V + G L +E S++Q GRA Sbjct 495 EIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA 550 >sp|B1IC35|UVRB_STRPI UvrABC system protein B OS=Streptococcus pneumoniae (strain Hungary19A-6) OX=487214 GN=uvrB PE=3 SV=1 Length=662 Score = 39.3 bits (90), Expect = 0.13, Method: Compositional matrix adjust. Identities = 32/129 (25%), Positives = 62/129 (48%), Gaps = 8/129 (6%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGR-A 472 ++ E+I+ + G ++LV ++ EG+D+P ++V + G L NE ++Q GR A Sbjct 488 ERTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAA 547 Query 473 RADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTK 532 R + A ++ ++R + A ++ A + + +IRDL A+TK Sbjct 548 RNSEGHVIMYADTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDL--IAVTK 605 Query 533 RAAQAAQRE 541 A+ +E Sbjct 606 AVAKEEDKE 614 >sp|A1STV6|UVRB_PSYIN UvrABC system protein B OS=Psychromonas ingrahamii (strain DSM 17664 / CCUG 51855 / 37) OX=357804 GN=uvrB PE=3 SV=1 Length=670 Score = 39.3 bits (90), Expect = 0.13, Method: Compositional matrix adjust. Identities = 19/56 (34%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + G ++L+ ++ EGLDIP ++V + G L +E S++Q GRA Sbjct 487 EIIRDLRLGIFDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTMGRA 542 >sp|Q6BLU9|PRP28_DEBHA Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=PRP28 PE=3 SV=2 Length=580 Score = 39.3 bits (90), Expect = 0.13, Method: Compositional matrix adjust. Identities = 18/57 (32%), Positives = 31/57 (54%), Gaps = 0/57 (0%) Query 416 TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA 472 +Q ++ I F++G +L+AT VA G+DIP+ ++VV Y + + GR Sbjct 472 SQEARERAIDSFREGKDKILIATDVAARGIDIPNVSLVVNYQMTKKFDEYIHRIGRT 528 >sp|A1CHL3|PRP28_ASPCL Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=prp28 PE=3 SV=1 Length=798 Score = 39.3 bits (90), Expect = 0.13, Method: Compositional matrix adjust. Identities = 32/107 (30%), Positives = 60/107 (56%), Gaps = 8/107 (7%) Query 407 GNSSQSTHMTQ-RDQQEV-IQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 G SS + H ++ +DQ+E + ++G+ ++LVAT +A G+D+P ++VV + + T+ S Sbjct 660 GFSSVTLHGSKTQDQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMATSIES 719 Query 465 MVQARGR-ARADQSVYA--FVATEGSR---ELKRELINEALETLMEQ 505 GR RA +S A F+ E + +LK+ L+ + + E+ Sbjct 720 YTHRIGRTGRAGKSGVAITFLGNEDADVMYDLKQMLMKSPISRVPEE 766 >sp|Q6LT47|UVRB_PHOPR UvrABC system protein B OS=Photobacterium profundum (strain SS9) OX=298386 GN=uvrB PE=3 SV=1 Length=674 Score = 39.3 bits (90), Expect = 0.13, Method: Compositional matrix adjust. Identities = 20/56 (36%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + G ++LV ++ EGLDIP ++V + G L +E S++Q GRA Sbjct 488 EIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA 543 >sp|Q4WXW1|DBP8_ASPFU ATP-dependent RNA helicase dbp8 OS=Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293) OX=330879 GN=dbp8 PE=3 SV=1 Length=526 Score = 39.3 bits (90), Expect = 0.13, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 3/86 (3%) Query 394 QTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN 451 +T D+ ++L + S H + Q ++ + +F+ +LVAT VA GLDIP + Sbjct 362 KTADLLERMLRRLSHRVTSLHSLLPQSERNANLARFRASAARILVATDVASRGLDIPTVS 421 Query 452 VVVRYGLLTNEISMVQARGR-ARADQ 476 +V+ Y + N V GR ARA + Sbjct 422 LVINYDVPRNPDDYVHRVGRTARAGR 447 >sp|B8H7K6|UVRB_PSECP UvrABC system protein B OS=Pseudarthrobacter chlorophenolicus (strain ATCC 700700 / DSM 12829 / CIP 107037 / JCM 12360 / KCTC 9906 / NCIMB 13794 / A6) OX=452863 GN=uvrB PE=3 SV=1 Length=704 Score = 39.3 bits (90), Expect = 0.13, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 11/110 (10%) Query 370 GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKF 427 G I TRT ++ L+ L ++ D L+G G + H + + E++++ Sbjct 444 GEIRTRTERNERVLVTTLTKRMAEDLTD----YLLGHGVKVEYLHSDVDTLRRVELLREL 499 Query 428 QDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 + GT ++LV ++ EGLD+P ++V + G L + S++Q GRA Sbjct 500 RMGTFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSSTSLIQTIGRA 549 >sp|Q89AK2|MFD_BUCBP Transcription-repair-coupling factor OS=Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) OX=224915 GN=mfd PE=3 SV=1 Length=697 Score = 39.3 bits (90), Expect = 0.13, Method: Compositional matrix adjust. Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 16/100 (16%) Query 400 AQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV----- 454 A + IG G + D + ++ F N+LV +++ E G+DIP+ N ++ Sbjct 389 ANIRIGHG------QLRSTDLESIMNDFYHKRFNVLVCSTIIETGIDIPNVNTIIIENAN 442 Query 455 RYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRE 493 +GL + Q RGR R+ YA++ +++K + Sbjct 443 NFGLA----QLHQLRGRVGRSQHQAYAWLLVPSLKDIKSD 478 >sp|Q6CT46|DBP3_KLULA ATP-dependent RNA helicase DBP3 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=DBP3 PE=3 SV=1 Length=504 Score = 39.3 bits (90), Expect = 0.13, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 2/84 (2%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR 473 ++Q+ + + + +F+ G NLL+AT VA GLDIP+ V+ V GR R Sbjct 374 LSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGR 433 Query 474 ADQSVYAF-VATEGSRELKRELIN 496 A Q A + TE + L L+N Sbjct 434 AGQYGTAHTLFTEQEKHLAGALVN 457 >sp|O05955|MFD_RICPR Transcription-repair-coupling factor OS=Rickettsia prowazekii (strain Madrid E) OX=272947 GN=mfd PE=3 SV=2 Length=1120 Score = 39.3 bits (90), Expect = 0.13, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 42/78 (54%), Gaps = 2/78 (3%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS-MVQARGR-A 472 MT EV+ +F G ++L++T++ E G+DI N ++ + T +S + Q RGR Sbjct 825 MTPSKIDEVMSEFYVGKFDILISTTIIESGIDIAEANTMIIHKADTLGLSQLYQLRGRIG 884 Query 473 RADQSVYAFVATEGSREL 490 R YA++ ++++ Sbjct 885 RGKIRGYAYLTVASNKKI 902 >sp|A5AA68|DBP8_ASPNC ATP-dependent RNA helicase dbp8 OS=Aspergillus niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) OX=425011 GN=dbp8 PE=3 SV=1 Length=522 Score = 39.3 bits (90), Expect = 0.14, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 3/84 (4%) Query 394 QTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN 451 +T D+ ++L + S H + Q ++ + +F+ LLVAT VA GLDIP Sbjct 358 KTADLLERMLRRLSHRVTSLHSLLPQSERNANLARFRASAARLLVATDVASRGLDIPSVE 417 Query 452 VVVRYGLLTNEISMVQARGR-ARA 474 +VV + + N V GR ARA Sbjct 418 LVVNFDVPRNPDDYVHRVGRTARA 441 >sp|Q6C347|FAL1_YARLI ATP-dependent RNA helicase FAL1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=FAL1 PE=3 SV=1 Length=397 Score = 38.9 bits (89), Expect = 0.14, Method: Compositional matrix adjust. Identities = 24/104 (23%), Positives = 46/104 (44%), Gaps = 14/104 (13%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 + +IF T++ WL QQ + S M Q+D+ ++ +F+ Sbjct 265 QAVIFCNTKKKVD----WLTQQMKDNNFTV----------CSMHGDMAQKDRDSIMNEFR 310 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA 472 G +L++T V G+D+ ++V+ Y L N + + GR+ Sbjct 311 SGRSRVLISTDVWARGIDVQQVSLVINYDLPPNRENYIHRIGRS 354 >sp|P45125|UVRB_HAEIN UvrABC system protein B OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=uvrB PE=3 SV=1 Length=679 Score = 39.3 bits (90), Expect = 0.14, Method: Compositional matrix adjust. Identities = 20/56 (36%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + G ++LV ++ EGLDIP ++V + G L +E S++Q GRA Sbjct 492 EIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA 547 >sp|Q605S7|UVRB_METCA UvrABC system protein B OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) OX=243233 GN=uvrB PE=3 SV=1 Length=664 Score = 39.3 bits (90), Expect = 0.14, Method: Compositional matrix adjust. Identities = 19/56 (34%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + G ++LV ++ EGLDIP ++V + G L + +S++Q GRA Sbjct 481 EIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSAVSLIQTIGRA 536 >sp|Q8W4E1|RH47_ARATH DEAD-box ATP-dependent RNA helicase 47, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RH47 PE=1 SV=2 Length=551 Score = 39.3 bits (90), Expect = 0.14, Method: Compositional matrix adjust. Identities = 24/94 (26%), Positives = 48/94 (51%), Gaps = 5/94 (5%) Query 380 AHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVA 437 A S++ ++ + L+ V + L G +S H + + + V++KF++G + +LV Sbjct 407 AQSVIAFMNHSRQLKDVVYK---LEARGMNSAEMHGDLGKLGRSTVLKKFKNGEIKVLVT 463 Query 438 TSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 ++ GLD+ C++VV L T+ + GR Sbjct 464 NELSARGLDVAECDLVVNLELPTDAVHYAHRAGR 497 >sp|Q0CNX1|DBP8_ASPTN ATP-dependent RNA helicase dbp8 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=dbp8 PE=3 SV=1 Length=527 Score = 39.3 bits (90), Expect = 0.14, Method: Compositional matrix adjust. Identities = 23/61 (38%), Positives = 32/61 (52%), Gaps = 1/61 (2%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR 473 + Q ++ + +F+ +LVAT VA GLDIP +VV Y + N V GR AR Sbjct 386 LPQSERSSNLARFRASAARILVATDVASRGLDIPSVALVVNYDVPRNPDDYVHRVGRTAR 445 Query 474 A 474 A Sbjct 446 A 446 >sp|P57844|UVRB_PASMU UvrABC system protein B OS=Pasteurella multocida (strain Pm70) OX=272843 GN=uvrB PE=3 SV=1 Length=678 Score = 39.3 bits (90), Expect = 0.14, Method: Compositional matrix adjust. Identities = 20/56 (36%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + G ++LV ++ EGLDIP ++V + G L +E S++Q GRA Sbjct 492 EIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA 547 >sp|Q4QJX4|UVRB_HAEI8 UvrABC system protein B OS=Haemophilus influenzae (strain 86-028NP) OX=281310 GN=uvrB PE=3 SV=1 Length=679 Score = 39.3 bits (90), Expect = 0.14, Method: Compositional matrix adjust. Identities = 20/56 (36%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + G ++LV ++ EGLDIP ++V + G L +E S++Q GRA Sbjct 492 EIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA 547 >sp|A1D1R8|DRS1_NEOFI ATP-dependent RNA helicase drs1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=drs1 PE=3 SV=1 Length=819 Score = 39.3 bits (90), Expect = 0.14, Method: Compositional matrix adjust. Identities = 49/182 (27%), Positives = 86/182 (47%), Gaps = 30/182 (16%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 R I+F R ++ AH + + GL + ++A L G+ M+Q + + ++ F+ Sbjct 546 RVIVFFRQKREAHRVRIVF----GL--LGLKAAELHGS--------MSQEQRIKSVENFR 591 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRY-GLLTNEISMVQARGRARADQSVYAFVATEGS 487 +G + L+AT +A GLDI V+ Y ++EI + + ARA +S A + Sbjct 592 EGKVAFLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTI---A 648 Query 488 RELKRELINEALETLMEQAVAAVQK-MDQA---EYQAKIRD--------LQQAALTKRAA 535 E R+++ A++ Q V + +D A E+ AK + LQ+ L K+ A Sbjct 649 AEPDRKIVKSAVKAGKAQGAKIVSRVVDPAVADEWAAKAKGLEDEIEEVLQEEKLEKQMA 708 Query 536 QA 537 QA Sbjct 709 QA 710 >sp|A6RGE3|DBP2_AJECN ATP-dependent RNA helicase DBP2 OS=Ajellomyces capsulatus (strain NAm1 / WU24) OX=2059318 GN=DBP2 PE=3 SV=1 Length=542 Score = 39.3 bits (90), Expect = 0.14, Method: Compositional matrix adjust. Identities = 38/152 (25%), Positives = 70/152 (46%), Gaps = 18/152 (12%) Query 347 ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA 406 E K + + K L R ++ + +IFT T++ A + +L+Q G + I Sbjct 353 EFEKRDRMAKHLDRIMEANKHSKVLIFTGTKRVADDITRFLRQD-GWPALSIH------- 404 Query 407 GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE---I 463 G+ Q+ +RD V+ +F+ G ++VAT VA G+D+ V+ Y N + Sbjct 405 GDKQQN----ERDW--VLNEFKTGKSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYV 458 Query 464 SMVQARGRARADQSVYAFVATEGSRELKRELI 495 + GRA A + T+ +++ R+L+ Sbjct 459 HRIGRTGRAGAKGTAITLFTTDNAKQ-ARDLV 489 >sp|B7UM74|RECG_ECO27 ATP-dependent DNA helicase RecG OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) OX=574521 GN=recG PE=3 SV=1 Length=693 Score = 39.3 bits (90), Expect = 0.14, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 37/62 (60%), Gaps = 9/62 (15%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQAR 469 M ++Q V+ F+ G L+LLVAT+V E G+D+P+ ++++ R GL + Q R Sbjct 527 MKPAEKQAVMTSFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGL----AQLHQLR 582 Query 470 GR 471 GR Sbjct 583 GR 584 >sp|A3LRW2|DBP3_PICST ATP-dependent RNA helicase DBP3 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) OX=322104 GN=DBP3 PE=3 SV=1 Length=526 Score = 38.9 bits (89), Expect = 0.14, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 2/84 (2%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR 473 ++Q+ + + F+ G +LL+AT VA GLDIP+ VV+ V GR R Sbjct 396 LSQQQRTNALNSFKKGESSLLLATDVAARGLDIPNVKVVINLTFPLTVEDYVHRIGRTGR 455 Query 474 ADQSVYAF-VATEGSRELKRELIN 496 A Q+ A + TE + L L+N Sbjct 456 AGQTGTAHTLFTEHEKHLSGALMN 479 >sp|Q0CZN5|DRS1_ASPTN ATP-dependent RNA helicase drs1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=drs1 PE=3 SV=1 Length=821 Score = 39.3 bits (90), Expect = 0.14, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 63/124 (51%), Gaps = 16/124 (13%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 R I+F R ++ AH + + GL + ++A L G+ M+Q + + ++ F+ Sbjct 551 RVIVFFRQKREAHRVRIVF----GL--LGLKAAELHGS--------MSQEQRIKSVENFR 596 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRY-GLLTNEISMVQARGRARADQSVYA-FVATEG 486 DG + L+AT +A GLDI V+ Y ++EI + + ARA +S A +A E Sbjct 597 DGKVAFLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEP 656 Query 487 SREL 490 R++ Sbjct 657 DRKV 660 >sp|A6RW79|PRP5_BOTFB Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Botryotinia fuckeliana (strain B05.10) OX=332648 GN=prp5 PE=3 SV=2 Length=1179 Score = 39.3 bits (90), Expect = 0.14, Method: Compositional matrix adjust. Identities = 35/144 (24%), Positives = 58/144 (40%), Gaps = 21/144 (15%) Query 347 ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA 406 E K L ++L +++ R +IF ++ A LL L ++ Sbjct 784 EKEKFHRLLELLGELYNTDEDARTLIFVDRQEKADDLLKDLMRK---------------- 827 Query 407 GNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTN 461 G S H Q D+ I F+ G + +++ATSVA GLD+ +VV + L + Sbjct 828 GYPCMSIHGGKDQVDRDSTIDDFKAGVVPIMIATSVAARGLDVKQLKLVVNFDAPNHLED 887 Query 462 EISMVQARGRARADQSVYAFVATE 485 + GRA + F+ E Sbjct 888 YVHRAGRTGRAGNTGTAVTFITEE 911 >sp|A6TGG9|RHLB_KLEP7 ATP-dependent RNA helicase RhlB OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) OX=272620 GN=rhlB PE=3 SV=1 Length=421 Score = 38.9 bits (89), Expect = 0.14, Method: Compositional matrix adjust. Identities = 38/134 (28%), Positives = 58/134 (43%), Gaps = 20/134 (15%) Query 346 PENP-KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI 404 P N K+ +L+ +L+ ++ R I+F T+ + W L R LL Sbjct 238 PSNEEKMRLLQTLLEEEWPD----RAIVFANTKHRCEDI--WGH----LAADGHRVGLLT 287 Query 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 G + Q+ + ++++F G L++LVAT VA GL IP V Y L + Sbjct 288 G--------DVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCED 339 Query 465 MVQARGR-ARADQS 477 V GR RA S Sbjct 340 YVHRIGRTGRAGAS 353 >sp|Q755W0|FAL1_EREGS ATP-dependent RNA helicase FAL1 OS=Eremothecium gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=FAL1 PE=3 SV=2 Length=398 Score = 38.9 bits (89), Expect = 0.14, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 48/103 (47%), Gaps = 5/103 (5%) Query 394 QTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN 451 + VD + LI + S H M Q D+ +V+ F+ G+ +L++T V G+D+ + Sbjct 275 KKVDWLSHKLIQNNFAVASIHGDMKQDDRDKVMSDFRSGSSRVLISTDVWARGIDVQQVS 334 Query 452 VVVRYG---LLTNEISMVQARGRARADQSVYAFVATEGSRELK 491 +V+ Y LL N I + GR F+ E +LK Sbjct 335 LVINYDLPELLENYIHRIGRSGRFGRKGVAINFITREEVTKLK 377 >sp|Q4WH83|DBP3_ASPFU ATP-dependent RNA helicase dbp3 OS=Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293) OX=330879 GN=dbp3 PE=3 SV=1 Length=503 Score = 38.9 bits (89), Expect = 0.14, Method: Compositional matrix adjust. Identities = 28/85 (33%), Positives = 42/85 (49%), Gaps = 4/85 (5%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL-LTNE--ISMVQARGR 471 + Q ++ + ++ F+ G+ +LVAT VA GLDIP +V+ LT E + + GR Sbjct 372 LNQHERFKSLEAFKTGSATVLVATDVAARGLDIPSVKLVINVTFPLTVEDYVHRIGRTGR 431 Query 472 ARADQSVYAFVATEGSRELKRELIN 496 A AD TE + LIN Sbjct 432 AGADGHAITLF-TEADKAQSGALIN 455 >sp|Q93ZG7|RH38_ARATH DEAD-box ATP-dependent RNA helicase 38 OS=Arabidopsis thaliana OX=3702 GN=RH38 PE=1 SV=2 Length=496 Score = 38.9 bits (89), Expect = 0.14, Method: Compositional matrix adjust. Identities = 24/90 (27%), Positives = 44/90 (49%), Gaps = 14/90 (16%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 IIF +T+ SA + L + +G +S ++T+ D+ +++++F++ Sbjct 344 IIFVKTKASAQKVHKALAE--------------MGYDVTSVHGNLTESDRDKIVKEFKEC 389 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLT 460 +L+AT V G D N+VV Y L T Sbjct 390 LTQVLIATDVIARGFDQQRVNLVVNYNLPT 419 >sp|Q65ST2|UVRB_MANSM UvrABC system protein B OS=Mannheimia succiniciproducens (strain KCTC 0769BP / MBEL55E) OX=221988 GN=uvrB PE=3 SV=1 Length=678 Score = 39.3 bits (90), Expect = 0.15, Method: Compositional matrix adjust. Identities = 20/56 (36%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + G ++LV ++ EGLDIP ++V + G L +E S++Q GRA Sbjct 492 EIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA 547 >sp|Q5HVA1|UVRB_CAMJR UvrABC system protein B OS=Campylobacter jejuni (strain RM1221) OX=195099 GN=uvrB PE=3 SV=1 Length=657 Score = 39.3 bits (90), Expect = 0.15, Method: Compositional matrix adjust. Identities = 16/59 (27%), Positives = 34/59 (58%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+I+ + G ++L+ ++ EGLD+P +++ + G L + S++Q GRA Sbjct 484 ERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGRA 542 >sp|B0JR86|UVRB_MICAN UvrABC system protein B OS=Microcystis aeruginosa (strain NIES-843 / IAM M-2473) OX=449447 GN=uvrB PE=3 SV=1 Length=667 Score = 39.3 bits (90), Expect = 0.15, Method: Compositional matrix adjust. Identities = 30/109 (28%), Positives = 52/109 (48%), Gaps = 19/109 (17%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 R +I T T++ A L +LQ++ I+ + L S Q E+IQ + Sbjct 446 RVLITTLTKRMAEDLTEYLQER------GIKVRYLHSEIQSIQRI--------EIIQDLR 491 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 +G ++L+ ++ EGLD+P ++V + G L S++Q GRA Sbjct 492 EGVFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRATRSLIQTIGRA 540 >sp|Q8CRP6|CSHA_STAES DEAD-box ATP-dependent RNA helicase CshA OS=Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200) OX=176280 GN=cshA PE=3 SV=1 Length=509 Score = 38.9 bits (89), Expect = 0.15, Method: Compositional matrix adjust. Identities = 25/79 (32%), Positives = 41/79 (52%), Gaps = 2/79 (3%) Query 396 VDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV 453 VD L+ G ++ H +TQ + EV++KF++ +++LVAT VA GLDI + V Sbjct 253 VDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDISGVSHV 312 Query 454 VRYGLLTNEISMVQARGRA 472 + + + S GR Sbjct 313 YNFDIPQDTESYTHRIGRT 331 >sp|Q91372|DDX4_XENLA Probable ATP-dependent RNA helicase DDX4 OS=Xenopus laevis OX=8355 GN=ddx4 PE=2 SV=1 Length=700 Score = 39.3 bits (90), Expect = 0.15, Method: Compositional matrix adjust. Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 22/112 (20%) Query 347 ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA 406 EN K+E L +IL+ SS R +IF T++ A + +L Q++ Sbjct 510 ENGKMEKLLEILK----SSEKERTMIFVNTKKKADFIAGYLCQEK--------------- 550 Query 407 GNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY 456 SS S H Q ++ + F+ G ++V T+VA GLDI + V+ Y Sbjct 551 -FSSTSIHGDREQYQRESALWDFRTGKCTVIVCTAVAARGLDIENVQHVINY 601 >sp|Q5HME0|CSHA_STAEQ DEAD-box ATP-dependent RNA helicase CshA OS=Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A) OX=176279 GN=cshA PE=3 SV=1 Length=509 Score = 38.9 bits (89), Expect = 0.15, Method: Compositional matrix adjust. Identities = 25/79 (32%), Positives = 41/79 (52%), Gaps = 2/79 (3%) Query 396 VDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV 453 VD L+ G ++ H +TQ + EV++KF++ +++LVAT VA GLDI + V Sbjct 253 VDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDISGVSHV 312 Query 454 VRYGLLTNEISMVQARGRA 472 + + + S GR Sbjct 313 YNFDIPQDTESYTHRIGRT 331 >sp|Q480C7|UVRB_COLP3 UvrABC system protein B OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) OX=167879 GN=uvrB PE=3 SV=1 Length=673 Score = 39.3 bits (90), Expect = 0.15, Method: Compositional matrix adjust. Identities = 19/56 (34%), Positives = 34/56 (61%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ F+ G ++LV ++ EGLD+P ++V + G L ++ S++Q GRA Sbjct 486 EIIRDFRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRA 541 >sp|P24230|RECG_ECOLI ATP-dependent DNA helicase RecG OS=Escherichia coli (strain K12) OX=83333 GN=recG PE=1 SV=1 Length=693 Score = 39.3 bits (90), Expect = 0.15, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 37/62 (60%), Gaps = 9/62 (15%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQAR 469 M ++Q V+ F+ G L+LLVAT+V E G+D+P+ ++++ R GL + Q R Sbjct 527 MKPAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGL----AQLHQLR 582 Query 470 GR 471 GR Sbjct 583 GR 584 >sp|Q9SQV1|RH40_ARATH DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana OX=3702 GN=RH40 PE=2 SV=1 Length=1088 Score = 39.3 bits (90), Expect = 0.15, Method: Compositional matrix adjust. Identities = 25/68 (37%), Positives = 34/68 (50%), Gaps = 1/68 (1%) Query 416 TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA 474 TQ ++ V+ +F+ G +L+AT VA GLDI VV+ Y T V GR RA Sbjct 714 TQGERDWVLNQFRSGKSCVLIATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRA 773 Query 475 DQSVYAFV 482 + AF Sbjct 774 GATGVAFT 781 Score = 38.5 bits (88), Expect = 0.25, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 61/137 (45%), Gaps = 13/137 (9%) Query 3 LRSYQWEVIMPALEGKNIIIWLPTGAGKTRA---AAYVAKRHL--ETVDGAKVVVLVNRV 57 +++ W + AL+ ++I+ TG+GKT A++ RH ++ +G V++L Sbjct 461 IQAQTWPI---ALQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSRNGPTVLILAPTR 517 Query 58 HLVTQ-HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE 116 L TQ E R R + T L G L R D+++ T L L E Sbjct 518 ELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELERGADIVVATPGRLNDIL----E 573 Query 117 EEHVELTVFSLIVVDEC 133 + ++ SL+V+DE Sbjct 574 MKMIDFQQVSLLVLDEA 590 >sp|Q7NTA7|UVRB_CHRVO UvrABC system protein B OS=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / CCUG 213 / NBRC 12614 / NCIMB 9131 / NCTC 9757 / MK) OX=243365 GN=uvrB PE=3 SV=1 Length=670 Score = 39.3 bits (90), Expect = 0.15, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 9/77 (12%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA---- 472 E+I+ + G ++L+ ++ EGLDIP ++V + G L +E S++Q GRA Sbjct 491 EIIRDLRLGMFDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNL 550 Query 473 RADQSVYAFVATEGSRE 489 R +YA T+ R+ Sbjct 551 RGKALLYADRITDSMRK 567 >sp|Q9PPM7|UVRB_CAMJE UvrABC system protein B OS=Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168) OX=192222 GN=uvrB PE=3 SV=1 Length=657 Score = 38.9 bits (89), Expect = 0.15, Method: Compositional matrix adjust. Identities = 16/59 (27%), Positives = 34/59 (58%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+I+ + G ++L+ ++ EGLD+P +++ + G L + S++Q GRA Sbjct 484 ERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGRA 542 >sp|Q72XV1|UVRB_BACC1 UvrABC system protein B OS=Bacillus cereus (strain ATCC 10987 / NRS 248) OX=222523 GN=uvrB PE=3 SV=1 Length=658 Score = 38.9 bits (89), Expect = 0.15, Method: Compositional matrix adjust. Identities = 20/56 (36%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + G ++LV ++ EGLDIP ++V + G L +E S++Q GRA Sbjct 486 EIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA 541 >sp|P41380|IF4A3_NICPL Eukaryotic initiation factor 4A-3 OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1 Length=391 Score = 38.9 bits (89), Expect = 0.15, Method: Compositional matrix adjust. Identities = 19/64 (30%), Positives = 34/64 (53%), Gaps = 0/64 (0%) Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 SS M Q+++ ++ +F+ GT +L+ T V GLD+ ++V+ Y L N + Sbjct 285 SSMHGDMPQKERDAIMAEFRGGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHR 344 Query 469 RGRA 472 GR+ Sbjct 345 IGRS 348 >sp|Q8XD86|RECG_ECO57 ATP-dependent DNA helicase RecG OS=Escherichia coli O157:H7 OX=83334 GN=recG PE=3 SV=1 Length=693 Score = 38.9 bits (89), Expect = 0.15, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 37/62 (60%), Gaps = 9/62 (15%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQAR 469 M ++Q V+ F+ G L+LLVAT+V E G+D+P+ ++++ R GL + Q R Sbjct 527 MKPAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGL----AQLHQLR 582 Query 470 GR 471 GR Sbjct 583 GR 584 >sp|Q3SIK7|UVRB_THIDA UvrABC system protein B OS=Thiobacillus denitrificans (strain ATCC 25259) OX=292415 GN=uvrB PE=3 SV=1 Length=675 Score = 38.9 bits (89), Expect = 0.15, Method: Compositional matrix adjust. Identities = 20/56 (36%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + G ++LV ++ EGLDIP ++V + G L +E S++Q GRA Sbjct 491 EIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA 546 >sp|Q6FW42|DRS1_CANGA ATP-dependent RNA helicase DRS1 OS=Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DRS1 PE=3 SV=1 Length=725 Score = 38.9 bits (89), Expect = 0.16, Method: Compositional matrix adjust. Identities = 25/101 (25%), Positives = 44/101 (44%), Gaps = 14/101 (14%) Query 358 LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ 417 L R+ + R ++F + AH L + L L+G + +TQ Sbjct 445 LIRKLDPNGQKRIVVFVARKDMAHKLRIILG--------------LLGMAVAELHGSLTQ 490 Query 418 RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL 458 + + + KF+ + +L+ T +A GLDIP VV+ Y + Sbjct 491 EQRLDSVNKFKSLQVPVLICTDLASRGLDIPKIEVVINYDM 531 >sp|Q8CWX7|UVRB_STRMU UvrABC system protein B OS=Streptococcus mutans serotype c (strain ATCC 700610 / UA159) OX=210007 GN=uvrB PE=3 SV=1 Length=663 Score = 38.9 bits (89), Expect = 0.16, Method: Compositional matrix adjust. Identities = 30/128 (23%), Positives = 58/128 (45%), Gaps = 11/128 (9%) Query 370 GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD 429 G I TR + + + L ++ D ++ G + + ++ E+I+ + Sbjct 441 GEINTRADKGERTFITTLTKKMAEDLTDYLKEM--GVKVKYMHSDIKTLERTEIIRDLRL 498 Query 430 GTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGR-ARADQS---VYA 480 G ++L+ ++ EG+D+P ++V + G L NE ++Q GR AR Q +YA Sbjct 499 GVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSQGHVIMYA 558 Query 481 FVATEGSR 488 T+ R Sbjct 559 DTVTQSMR 566 >sp|Q631I6|UVRB_BACCZ UvrABC system protein B OS=Bacillus cereus (strain ZK / E33L) OX=288681 GN=uvrB PE=3 SV=1 Length=658 Score = 38.9 bits (89), Expect = 0.16, Method: Compositional matrix adjust. Identities = 20/56 (36%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + G ++LV ++ EGLDIP ++V + G L +E S++Q GRA Sbjct 486 EIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA 541 >sp|A2QQA8|PRP5_ASPNC Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Aspergillus niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) OX=425011 GN=prp5 PE=3 SV=2 Length=1180 Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 41/90 (46%), Gaps = 18/90 (20%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQK 426 R +IF +++A +LL L ++ G S H Q D+ I+ Sbjct 801 RALIFVDRQEAADALLRELMRK----------------GYPCMSIHGGKDQIDRDSTIED 844 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRY 456 F+ G +L+ATSVA GLD+ +VV Y Sbjct 845 FKAGIFPVLIATSVAARGLDVKQLKLVVNY 874 >sp|B5XYY9|RHLB_KLEP3 ATP-dependent RNA helicase RhlB OS=Klebsiella pneumoniae (strain 342) OX=507522 GN=rhlB PE=3 SV=1 Length=421 Score = 38.9 bits (89), Expect = 0.16, Method: Compositional matrix adjust. Identities = 37/129 (29%), Positives = 55/129 (43%), Gaps = 19/129 (15%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +L+ ++ R IIF T+ + W L R LL G Sbjct 243 KMRLLQTLLEEEWPD----RAIIFANTKHRCEDI--WGH----LAADGHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q+ + ++ +F G L++LVAT VA GL IP V Y L + V Sbjct 289 ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI 344 Query 470 GR-ARADQS 477 GR RA S Sbjct 345 GRTGRAGAS 353 >sp|B0CE09|UVRB_ACAM1 UvrABC system protein B OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=uvrB PE=3 SV=1 Length=668 Score = 38.9 bits (89), Expect = 0.16, Method: Compositional matrix adjust. Identities = 27/109 (25%), Positives = 53/109 (49%), Gaps = 19/109 (17%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 R +I T T++ A L + +++ +R + L N+ Q E+++ + Sbjct 446 RTLITTLTKRMAEDLTEYFEER------GVRVRYLHSEINAIQRI--------EILRDLR 491 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 +G ++L+ ++ EGLD+P ++V + G L E S++Q GRA Sbjct 492 EGVFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRA 540 >sp|A7ENE0|PRP5_SCLS1 Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 GN=prp5 PE=3 SV=1 Length=1114 Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust. Identities = 35/144 (24%), Positives = 58/144 (40%), Gaps = 21/144 (15%) Query 347 ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA 406 E K L ++L +++ R +IF ++ A LL L ++ Sbjct 713 EKEKFHRLLELLGELYNADEDARTLIFVDRQEKADDLLKDLMRK---------------- 756 Query 407 GNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTN 461 G S H Q D+ I F+ G + +++ATSVA GLD+ +VV + L + Sbjct 757 GYPCMSIHGGKDQVDRDSTIDDFKAGVVPIMIATSVAARGLDVKQLKLVVNFDAPNHLED 816 Query 462 EISMVQARGRARADQSVYAFVATE 485 + GRA + F+ E Sbjct 817 YVHRAGRTGRAGNTGTAVTFITEE 840 >sp|A6SFV4|DBP8_BOTFB ATP-dependent RNA helicase dbp8 OS=Botryotinia fuckeliana (strain B05.10) OX=332648 GN=dbp8 PE=3 SV=1 Length=545 Score = 38.9 bits (89), Expect = 0.16, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 43/80 (54%), Gaps = 2/80 (3%) Query 413 THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR- 471 + + QR + + + +F+ +LVAT VA GLDIP +V+ Y + + + GR Sbjct 403 SKLPQRQRIDNLGRFRASAARILVATDVAARGLDIPEVGLVINYDIPRDPDDYIHRVGRT 462 Query 472 ARADQSVYAFVATEGSRELK 491 ARA + A V+ G R+++ Sbjct 463 ARAGRKGEA-VSFVGQRDVQ 481 >sp|Q9CWT6|DDX28_MOUSE Probable ATP-dependent RNA helicase DDX28 OS=Mus musculus OX=10090 GN=Ddx28 PE=2 SV=2 Length=540 Score = 38.9 bits (89), Expect = 0.16, Method: Compositional matrix adjust. Identities = 22/65 (34%), Positives = 30/65 (46%), Gaps = 5/65 (8%) Query 423 VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-----ARADQS 477 + Q FQ G+ N+LV T +A GLD H VV+ Y + GR + S Sbjct 439 IFQSFQKGSQNILVCTDIASRGLDSVHVEVVINYDFPPTLQDYIHRAGRVGRVGSEVPGS 498 Query 478 VYAFV 482 V +FV Sbjct 499 VISFV 503 >sp|Q5P0E7|UVRB_AROAE UvrABC system protein B OS=Aromatoleum aromaticum (strain DSM 19018 / LMG 30748 / EbN1) OX=76114 GN=uvrB PE=3 SV=1 Length=685 Score = 38.9 bits (89), Expect = 0.16, Method: Compositional matrix adjust. Identities = 20/56 (36%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + G ++LV ++ EGLDIP ++V + G L +E S++Q GRA Sbjct 499 EIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA 554 >sp|Q8NJM2|DBP10_ASPFU ATP-dependent RNA helicase dbp10 OS=Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293) OX=330879 GN=dbp10 PE=3 SV=1 Length=869 Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 53/113 (47%), Gaps = 6/113 (5%) Query 372 IFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQD 429 + TR + HS +++ + VD LL AG + + + Q ++ +Q F+ Sbjct 346 VNTRESPTKHSTIVFAATKH---HVDYLYSLLCEAGFAVSYVYGSLDQTARKIQVQNFRT 402 Query 430 GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF 481 G N+LV T VA G+DIP V+ Y + V GR ARA + +++ Sbjct 403 GMTNILVVTDVAARGIDIPILANVINYDFPSQPKIFVHRVGRTARAGRKGWSY 455 >sp|Q6HBC2|UVRB_BACHK UvrABC system protein B OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) OX=281309 GN=uvrB PE=3 SV=1 Length=658 Score = 38.9 bits (89), Expect = 0.17, Method: Compositional matrix adjust. Identities = 20/56 (36%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + G ++LV ++ EGLDIP ++V + G L +E S++Q GRA Sbjct 486 EIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA 541 >sp|Q815I3|UVRB_BACCR UvrABC system protein B OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711) OX=226900 GN=uvrB PE=3 SV=1 Length=658 Score = 38.9 bits (89), Expect = 0.17, Method: Compositional matrix adjust. Identities = 20/56 (36%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + G ++LV ++ EGLDIP ++V + G L +E S++Q GRA Sbjct 486 EIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA 541 >sp|Q81X47|UVRB_BACAN UvrABC system protein B OS=Bacillus anthracis OX=1392 GN=uvrB PE=3 SV=1 Length=658 Score = 38.9 bits (89), Expect = 0.17, Method: Compositional matrix adjust. Identities = 20/56 (36%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + G ++LV ++ EGLDIP ++V + G L +E S++Q GRA Sbjct 486 EIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA 541 >sp|Q4I830|DRS1_GIBZE ATP-dependent RNA helicase DRS1 OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=DRS1 PE=3 SV=2 Length=792 Score = 38.9 bits (89), Expect = 0.17, Method: Compositional matrix adjust. Identities = 28/91 (31%), Positives = 42/91 (46%), Gaps = 20/91 (22%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA-GNSSQSTH--MTQRDQQEVIQ 425 R IIF R ++ AH RA+++ G G S H M Q + ++ Sbjct 503 RVIIFFRQKKDAH-----------------RARIIFGLLGLSCAELHGSMNQTQRISSVE 545 Query 426 KFQDGTLNLLVATSVAEEGLDIPHCNVVVRY 456 F+DG + L+AT +A GLDI + V+ Y Sbjct 546 DFRDGKVAYLLATDLASRGLDIKGVDTVINY 576 >sp|Q6BML1|PRP5_DEBHA Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=PRP5 PE=3 SV=2 Length=913 Score = 38.9 bits (89), Expect = 0.17, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 5/79 (6%) Query 417 QRDQQEVIQKFQ--DGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGR 471 Q D++ I++F + +N+L+ATS+A GLD+ N+V+ Y + + + V GR Sbjct 610 QIDRKHAIREFSSSNSGVNILIATSIAARGLDVKGLNLVINYEAASHMEDYVHRVGRTGR 669 Query 472 ARADQSVYAFVATEGSREL 490 A + FV+++ R + Sbjct 670 AGRKGTAITFVSSKQGRAI 688 >sp|Q97LQ2|UVRB_CLOAB UvrABC system protein B OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / IAM 19013 / LMG 5710 / NBRC 13948 / NRRL B-527 / VKM B-1787 / 2291 / W) OX=272562 GN=uvrB PE=3 SV=1 Length=666 Score = 38.9 bits (89), Expect = 0.17, Method: Compositional matrix adjust. Identities = 27/112 (24%), Positives = 52/112 (46%), Gaps = 19/112 (17%) Query 366 NSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQ 425 N R ++ T T++ A L +L+ +G + + + ++ ++I+ Sbjct 443 NGFRILVTTLTKKMAEDLTDYLKD--------------LGIKTTYMHSDIDTLERMKIIK 488 Query 426 KFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 + G ++LV ++ EGLDIP +V + G L +E S++Q GRA Sbjct 489 DVRTGEFDVLVGINLLREGLDIPEVALVAILDADKEGFLRSERSLIQTIGRA 540 >sp|Q48KA6|UVRB_PSE14 UvrABC system protein B OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6) OX=264730 GN=uvrB PE=3 SV=1 Length=671 Score = 38.9 bits (89), Expect = 0.17, Method: Compositional matrix adjust. Identities = 19/56 (34%), Positives = 34/56 (61%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + GT ++LV ++ EGLD+P ++V + G L ++ S++Q GRA Sbjct 485 EIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRA 540 >sp|Q5XBN4|UVRB_STRP6 UvrABC system protein B OS=Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394) OX=286636 GN=uvrB PE=3 SV=1 Length=663 Score = 38.9 bits (89), Expect = 0.17, Method: Compositional matrix adjust. Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 22/126 (17%) Query 352 EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ 411 ++L +I QR + R I T T++ A L +L++ +G Sbjct 438 DLLGEINQR---VARDERTFITTLTKKMAEDLTDYLKE--------------MGVKVKYM 480 Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMV 466 + + ++ E+I+ + G ++L+ ++ EG+D+P ++V + G L NE ++ Sbjct 481 HSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLI 540 Query 467 QARGRA 472 Q GRA Sbjct 541 QTIGRA 546 >sp|Q55CP6|DDX1_DICDI Probable ATP-dependent RNA helicase ddx1 OS=Dictyostelium discoideum OX=44689 GN=ddx1 PE=3 SV=1 Length=765 Score = 38.9 bits (89), Expect = 0.17, Method: Compositional matrix adjust. Identities = 30/113 (27%), Positives = 52/113 (46%), Gaps = 12/113 (11%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL----LIGAGNSSQSTHMTQRDQQEVI 424 + IIF RTR + +L+ G T + + L G N S R +++ + Sbjct 536 QAIIFARTRLDCDHIHQFLKDAGGGNTSGLEGEFSSTVLHGGDNIS-------RARKDNL 588 Query 425 QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQ 476 +KF++G + L+ T VA G+DI ++ Y L + + GR R+D+ Sbjct 589 EKFRNGDVRFLICTDVAARGIDIRGLPYMINYTLPESFEDYIHRVGRVGRSDR 641 >sp|Q884C9|UVRB_PSESM UvrABC system protein B OS=Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000) OX=223283 GN=uvrB PE=3 SV=1 Length=671 Score = 38.9 bits (89), Expect = 0.17, Method: Compositional matrix adjust. Identities = 19/56 (34%), Positives = 34/56 (61%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + GT ++LV ++ EGLD+P ++V + G L ++ S++Q GRA Sbjct 485 EIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRA 540 >sp|Q4WRV2|DRS1_ASPFU ATP-dependent RNA helicase drs1 OS=Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293) OX=330879 GN=drs1 PE=3 SV=1 Length=830 Score = 38.9 bits (89), Expect = 0.17, Method: Compositional matrix adjust. Identities = 49/182 (27%), Positives = 86/182 (47%), Gaps = 30/182 (16%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 R I+F R ++ AH + + GL + ++A L G+ M+Q + + ++ F+ Sbjct 557 RVIVFFRQKREAHRVRIVF----GL--LGLKAAELHGS--------MSQEQRIKSVENFR 602 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRY-GLLTNEISMVQARGRARADQSVYAFVATEGS 487 +G + L+AT +A GLDI V+ Y ++EI + + ARA +S A + Sbjct 603 EGKVAFLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTI---A 659 Query 488 RELKRELINEALETLMEQAVAAVQK-MDQA---EYQAKIRD--------LQQAALTKRAA 535 E R+++ A++ Q V + +D A E+ AK + LQ+ L K+ A Sbjct 660 AEPDRKIVKSAVKAGKAQGAKIVSRVVDPAVADEWAAKAKGLEDEIEEVLQEEKLEKQMA 719 Query 536 QA 537 QA Sbjct 720 QA 721 >sp|A5DE68|FAL1_PICGU ATP-dependent RNA helicase FAL1 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=FAL1 PE=3 SV=2 Length=397 Score = 38.5 bits (88), Expect = 0.17, Method: Compositional matrix adjust. Identities = 16/58 (28%), Positives = 35/58 (60%), Gaps = 0/58 (0%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA 472 M Q D+ ++++F+ G+ +L++T V G+D+ ++V+ Y L ++ + V GR+ Sbjct 297 MKQEDRDSIMKEFRSGSTRVLISTDVWARGIDVQQVSLVINYDLPLDKENYVHRIGRS 354 >sp|Q4L7W0|CSHA_STAHJ DEAD-box ATP-dependent RNA helicase CshA OS=Staphylococcus haemolyticus (strain JCSC1435) OX=279808 GN=cshA PE=3 SV=1 Length=503 Score = 38.9 bits (89), Expect = 0.17, Method: Compositional matrix adjust. Identities = 25/79 (32%), Positives = 41/79 (52%), Gaps = 2/79 (3%) Query 396 VDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV 453 VD L+ G ++ H +TQ + EV++KF++ +++LVAT VA GLDI + V Sbjct 253 VDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDISGVSHV 312 Query 454 VRYGLLTNEISMVQARGRA 472 + + + S GR Sbjct 313 YNFDIPQDTESYTHRIGRT 331 >sp|Q2UKX3|DBP8_ASPOR ATP-dependent RNA helicase dbp8 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=dbp8 PE=3 SV=1 Length=443 Score = 38.5 bits (88), Expect = 0.17, Method: Compositional matrix adjust. Identities = 28/109 (26%), Positives = 52/109 (48%), Gaps = 6/109 (6%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQ 428 ++ + R S +++ + T D+ ++L + S H + Q ++ + +F+ Sbjct 259 VLLSTERNSTKPAIIFCNHTK---TADLLERMLRRLSHRVTSLHSLLPQSERNSNLARFR 315 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQ 476 +LVAT VA GLDIP ++V+ + + N V GR ARA + Sbjct 316 ASAARILVATDVASRGLDIPSVSLVINFDVPRNPDDYVHRVGRTARAGR 364 >sp|Q1JGE8|UVRB_STRPD UvrABC system protein B OS=Streptococcus pyogenes serotype M2 (strain MGAS10270) OX=370552 GN=uvrB PE=3 SV=1 Length=663 Score = 38.9 bits (89), Expect = 0.17, Method: Compositional matrix adjust. Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 22/126 (17%) Query 352 EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ 411 ++L +I QR + R I T T++ A L +L++ +G Sbjct 438 DLLGEINQR---VARDERTFITTLTKKMAEDLTDYLKE--------------MGVKVKYM 480 Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMV 466 + + ++ E+I+ + G ++L+ ++ EG+D+P ++V + G L NE ++ Sbjct 481 HSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLI 540 Query 467 QARGRA 472 Q GRA Sbjct 541 QTIGRA 546 >sp|Q4ZV05|UVRB_PSEU2 UvrABC system protein B OS=Pseudomonas syringae pv. syringae (strain B728a) OX=205918 GN=uvrB PE=3 SV=1 Length=671 Score = 38.9 bits (89), Expect = 0.17, Method: Compositional matrix adjust. Identities = 19/56 (34%), Positives = 34/56 (61%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + GT ++LV ++ EGLD+P ++V + G L ++ S++Q GRA Sbjct 485 EIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRA 540 >sp|Q47EI2|UVRB_DECAR UvrABC system protein B OS=Dechloromonas aromatica (strain RCB) OX=159087 GN=uvrB PE=3 SV=1 Length=690 Score = 38.9 bits (89), Expect = 0.18, Method: Compositional matrix adjust. Identities = 20/56 (36%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + G ++LV ++ EGLDIP ++V + G L +E S++Q GRA Sbjct 499 EIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA 554 >sp|Q6LZA2|UVRB_METMP UvrABC system protein B OS=Methanococcus maripaludis (strain DSM 14266 / JCM 13030 / NBRC 101832 / S2 / LL) OX=267377 GN=uvrB PE=3 SV=1 Length=646 Score = 38.9 bits (89), Expect = 0.18, Method: Compositional matrix adjust. Identities = 30/109 (28%), Positives = 53/109 (49%), Gaps = 19/109 (17%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 R +I T T++ A L +L ++ +++A+ L ++ + T E+I+ + Sbjct 445 RVLITTLTKRLAEELTEYLAKR------NVKARYLHSDIDTIERT--------EIIRNLR 490 Query 429 DGTLNLLVATSVAEEGLDIPHCNVV-----VRYGLLTNEISMVQARGRA 472 G + LV ++ EGLDIP V + G L N+ S++Q GRA Sbjct 491 LGKFDCLVGINLLREGLDIPEVGFVGILDADKEGFLRNDKSLIQTIGRA 539 >sp|C0MDC6|UVRB_STRS7 UvrABC system protein B OS=Streptococcus equi subsp. zooepidemicus (strain H70) OX=553483 GN=uvrB PE=3 SV=1 Length=663 Score = 38.9 bits (89), Expect = 0.18, Method: Compositional matrix adjust. Identities = 25/109 (23%), Positives = 50/109 (46%), Gaps = 19/109 (17%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 R I T T++ A L +L++ +G + + ++ E+I+ + Sbjct 452 RTFITTLTKKMAEDLTDYLKE--------------MGVKVKYMHSDIKTLERTEIIRDLR 497 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 G ++L+ ++ EG+D+P ++V + G L NE ++Q GRA Sbjct 498 LGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRA 546 >sp|A0RPB3|UVRB_CAMFF UvrABC system protein B OS=Campylobacter fetus subsp. fetus (strain 82-40) OX=360106 GN=uvrB PE=3 SV=1 Length=658 Score = 38.9 bits (89), Expect = 0.18, Method: Compositional matrix adjust. Identities = 18/59 (31%), Positives = 34/59 (58%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+I+ + G ++LV ++ EGLD+P ++V + G L + S++Q GRA Sbjct 486 ERNELIRGLRKGEFDMLVGINLLREGLDLPEVSLVAVLDADKEGFLRSRTSLIQTMGRA 544 >sp|Q2GUI4|DBP3_CHAGB ATP-dependent RNA helicase DBP3 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=DBP3 PE=3 SV=1 Length=566 Score = 38.9 bits (89), Expect = 0.18, Method: Compositional matrix adjust. Identities = 29/109 (27%), Positives = 53/109 (49%), Gaps = 14/109 (13%) Query 346 PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 P + +LE + + Q S+ + R ++F ++ A ++ +Q L+ IR + G Sbjct 431 PRGKEQRLLELLKEAQKGSAKNDRILVFCLYKKEA------VRVEQNLERRGIRVCSIHG 484 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV 454 + Q + ++ F+ GT ++LVAT VA GLDIP +V+ Sbjct 485 --------DLRQDQRTRSLESFKAGTTSVLVATDVAARGLDIPEVKLVI 525 >sp|B4U3P4|UVRB_STREM UvrABC system protein B OS=Streptococcus equi subsp. zooepidemicus (strain MGCS10565) OX=552526 GN=uvrB PE=3 SV=1 Length=663 Score = 38.9 bits (89), Expect = 0.18, Method: Compositional matrix adjust. Identities = 25/109 (23%), Positives = 50/109 (46%), Gaps = 19/109 (17%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 R I T T++ A L +L++ +G + + ++ E+I+ + Sbjct 452 RTFITTLTKKMAEDLTDYLKE--------------MGVKVKYMHSDIKTLERTEIIRDLR 497 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 G ++L+ ++ EG+D+P ++V + G L NE ++Q GRA Sbjct 498 LGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRA 546 >sp|Q9DGP9|DDX25_XENLA ATP-dependent RNA helicase DDX25 OS=Xenopus laevis OX=8355 GN=deadsouth PE=2 SV=1 Length=483 Score = 38.5 bits (88), Expect = 0.18, Method: Compositional matrix adjust. Identities = 27/93 (29%), Positives = 47/93 (51%), Gaps = 14/93 (15%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 + I+F +TR+ A WL Q+ L + LL G + D+ ++IQ+F+ Sbjct 340 QAIVFCQTRKIAS----WLSQK--LSDDGHQVALLSG--------ELPVYDRADMIQRFR 385 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN 461 +G +LV T+V G+D+ ++VV + L N Sbjct 386 EGREKVLVTTNVCARGIDVEQVSIVVNFDLPVN 418 >sp|Q87MX6|UVRB_VIBPA UvrABC system protein B OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) OX=223926 GN=uvrB PE=3 SV=1 Length=676 Score = 38.9 bits (89), Expect = 0.18, Method: Compositional matrix adjust. Identities = 28/114 (25%), Positives = 56/114 (49%), Gaps = 19/114 (17%) Query 364 SSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEV 423 ++ R ++ T T++ A L +L + D+R + L + + ++ E+ Sbjct 444 AAKEERVLVTTLTKRMAEDLTEYLHEH------DVRVRYL--------HSDIDTVERVEI 489 Query 424 IQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 490 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 543 >sp|Q8P0J7|UVRB_STRP8 UvrABC system protein B OS=Streptococcus pyogenes serotype M18 (strain MGAS8232) OX=186103 GN=uvrB PE=3 SV=1 Length=663 Score = 38.9 bits (89), Expect = 0.18, Method: Compositional matrix adjust. Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 22/126 (17%) Query 352 EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ 411 ++L +I QR + R I T T++ A L +L++ +G Sbjct 438 DLLGEINQR---VARDERTFITTLTKKMAEDLTDYLKE--------------MGVKVKYM 480 Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMV 466 + + ++ E+I+ + G ++L+ ++ EG+D+P ++V + G L NE ++ Sbjct 481 HSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLI 540 Query 467 QARGRA 472 Q GRA Sbjct 541 QTIGRA 546 >sp|Q5UYC8|UVRB_HALMA UvrABC system protein B OS=Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) OX=272569 GN=uvrB PE=3 SV=1 Length=686 Score = 38.9 bits (89), Expect = 0.18, Method: Compositional matrix adjust. Identities = 31/126 (25%), Positives = 58/126 (46%), Gaps = 22/126 (17%) Query 352 EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ 411 ++LE+I R R ++ T T++ A L +L++ G + Sbjct 446 DLLERIDDR---VDRDERVLVTTLTKRMAEDLTEYLEES--------------GVNVAYM 488 Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMV 466 ++ E+I+ + G +++LV ++ EGLDIP ++V + G L +E ++V Sbjct 489 HDETDTLERHELIRSLRLGDIDVLVGINLLREGLDIPEVSLVAILDADQEGFLRSETTLV 548 Query 467 QARGRA 472 Q GRA Sbjct 549 QTMGRA 554 >sp|F1NTD6|ASCC3_CHICK Activating signal cointegrator 1 complex subunit 3 OS=Gallus gallus OX=9031 GN=ascc3 PE=3 SV=2 Length=2211 Score = 38.9 bits (89), Expect = 0.19, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 77/157 (49%), Gaps = 14/157 (9%) Query 19 NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRW--T 76 N+++ PTG+GKT AA R +K V + LV + E+++ ++ + Sbjct 1353 NVLLGAPTGSGKTVAAELAIFRVFNKYPTSKAVYIAPLKALVRERIEDWKVRIEEKLGKK 1412 Query 77 VTTLSGDMGP--RAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECH 134 V L+GD+ P RA +A+ DL++ T E S + +V+ S++++DE H Sbjct 1413 VVELTGDVTPDMRA----IAQA-DLIVTTPEKWDGVSRSWQNRSYVQKV--SILIIDEIH 1465 Query 135 --HTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS 169 + V VI+S+ + +P+ +V+GL+ + Sbjct 1466 LLGDERGPVLEVIVSRTNFISSHTEKPV-RVVGLSTA 1501 Score = 38.5 bits (88), Expect = 0.26, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 80/173 (46%), Gaps = 34/173 (20%) Query 17 GKNIIIWLPTGAGKTRAAAYVA----KRHLE----TVDGAKVVVLVNRVHLVTQHGEEFR 68 +N++I PTGAGKT A ++H++ D K+V + L + F Sbjct 501 NENMLICAPTGAGKTNIAMLTVLHEIRQHVQHGVIKKDEFKIVYVAPMKALAAEMTNYFS 560 Query 69 RMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELT---- 123 + L+ TV L+GDM + G + R QM +T+PE+ + V Sbjct 561 KRLEPLGITVKELTGDM--QLSKGEILRT-----------QMLVTTPEKWDVVTRKSVGD 607 Query 124 -----VFSLIVVDECHHTHKD--TVYNVIMSQYLELKLQRAQPLPQVLGLTAS 169 + L+++DE H H+D V I+++ L +++ Q + ++LGL+A+ Sbjct 608 VALSQLVKLLILDEVHLLHEDRGPVLESIVARTLR-QVESTQSMIRILGLSAT 659 >sp|Q0SW76|UVRB_CLOPS UvrABC system protein B OS=Clostridium perfringens (strain SM101 / Type A) OX=289380 GN=uvrB PE=3 SV=1 Length=659 Score = 38.9 bits (89), Expect = 0.19, Method: Compositional matrix adjust. Identities = 29/124 (23%), Positives = 63/124 (51%), Gaps = 25/124 (20%) Query 354 LEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQST 413 +++ +QR F R +I T T++ A L +L+ ++++A + + Sbjct 437 IQRTVQRGF------RVLITTLTKRMAEDLTKYLKD------LNVKATYM--------HS 476 Query 414 HMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQA 468 + ++ ++I++ + G +++L+ ++ EGLDIP +V + G L +E S++Q Sbjct 477 DIDTLERMKIIRELRLGEVDVLIGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQT 536 Query 469 RGRA 472 GRA Sbjct 537 IGRA 540 >sp|Q48SZ1|UVRB_STRPM UvrABC system protein B OS=Streptococcus pyogenes serotype M28 (strain MGAS6180) OX=319701 GN=uvrB PE=3 SV=1 Length=663 Score = 38.9 bits (89), Expect = 0.19, Method: Compositional matrix adjust. Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 22/126 (17%) Query 352 EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ 411 ++L +I QR + R I T T++ A L +L++ +G Sbjct 438 DLLGEINQR---VARDERTFITTLTKKMAEDLTDYLKE--------------MGVKVKYM 480 Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMV 466 + + ++ E+I+ + G ++L+ ++ EG+D+P ++V + G L NE ++ Sbjct 481 HSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLI 540 Query 467 QARGRA 472 Q GRA Sbjct 541 QTIGRA 546 >sp|C0MBD7|UVRB_STRE4 UvrABC system protein B OS=Streptococcus equi subsp. equi (strain 4047) OX=553482 GN=uvrB PE=3 SV=1 Length=663 Score = 38.9 bits (89), Expect = 0.19, Method: Compositional matrix adjust. Identities = 25/109 (23%), Positives = 50/109 (46%), Gaps = 19/109 (17%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 R I T T++ A L +L++ +G + + ++ E+I+ + Sbjct 452 RTFITTLTKKMAEDLTDYLKE--------------MGVKVKYMHSDIKTLERTEIIRDLR 497 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 G ++L+ ++ EG+D+P ++V + G L NE ++Q GRA Sbjct 498 LGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRA 546 >sp|P0DH39|UVRB_STRPQ UvrABC system protein B OS=Streptococcus pyogenes serotype M3 (strain SSI-1) OX=193567 GN=uvrB PE=3 SV=1 Length=663 Score = 38.9 bits (89), Expect = 0.19, Method: Compositional matrix adjust. Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 22/126 (17%) Query 352 EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ 411 ++L +I QR + R I T T++ A L +L++ +G Sbjct 438 DLLGEINQR---VARDERTFITTLTKKMAEDLTDYLKE--------------MGVKVKYM 480 Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMV 466 + + ++ E+I+ + G ++L+ ++ EG+D+P ++V + G L NE ++ Sbjct 481 HSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLI 540 Query 467 QARGRA 472 Q GRA Sbjct 541 QTIGRA 546 >sp|Q1JLB5|UVRB_STRPC UvrABC system protein B OS=Streptococcus pyogenes serotype M12 (strain MGAS9429) OX=370551 GN=uvrB PE=3 SV=1 Length=663 Score = 38.9 bits (89), Expect = 0.19, Method: Compositional matrix adjust. Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 22/126 (17%) Query 352 EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ 411 ++L +I QR + R I T T++ A L +L++ +G Sbjct 438 DLLGEINQR---VARDERTFITTLTKKMAEDLTDYLKE--------------MGVKVKYM 480 Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMV 466 + + ++ E+I+ + G ++L+ ++ EG+D+P ++V + G L NE ++ Sbjct 481 HSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLI 540 Query 467 QARGRA 472 Q GRA Sbjct 541 QTIGRA 546 >sp|Q1JBD1|UVRB_STRPB UvrABC system protein B OS=Streptococcus pyogenes serotype M12 (strain MGAS2096) OX=370553 GN=uvrB PE=3 SV=1 Length=663 Score = 38.9 bits (89), Expect = 0.19, Method: Compositional matrix adjust. Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 22/126 (17%) Query 352 EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ 411 ++L +I QR + R I T T++ A L +L++ +G Sbjct 438 DLLGEINQR---VARDERTFITTLTKKMAEDLTDYLKE--------------MGVKVKYM 480 Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMV 466 + + ++ E+I+ + G ++L+ ++ EG+D+P ++V + G L NE ++ Sbjct 481 HSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLI 540 Query 467 QARGRA 472 Q GRA Sbjct 541 QTIGRA 546 >sp|P0DH38|UVRB_STRP3 UvrABC system protein B OS=Streptococcus pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315) OX=198466 GN=uvrB PE=3 SV=1 Length=663 Score = 38.9 bits (89), Expect = 0.19, Method: Compositional matrix adjust. Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 22/126 (17%) Query 352 EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ 411 ++L +I QR + R I T T++ A L +L++ +G Sbjct 438 DLLGEINQR---VARDERTFITTLTKKMAEDLTDYLKE--------------MGVKVKYM 480 Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMV 466 + + ++ E+I+ + G ++L+ ++ EG+D+P ++V + G L NE ++ Sbjct 481 HSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLI 540 Query 467 QARGRA 472 Q GRA Sbjct 541 QTIGRA 546 >sp|Q3K051|UVRB_STRA1 UvrABC system protein B OS=Streptococcus agalactiae serotype Ia (strain ATCC 27591 / A909 / CDC SS700) OX=205921 GN=uvrB PE=3 SV=1 Length=663 Score = 38.9 bits (89), Expect = 0.19, Method: Compositional matrix adjust. Identities = 24/108 (22%), Positives = 50/108 (46%), Gaps = 7/108 (6%) Query 370 GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD 429 G I RT + + + L ++ D ++ G + + ++ E+I+ + Sbjct 441 GEINLRTEKGERTFITTLTKRMAEDLTDYLKEM--GVKVKYMHSDIKTLERTEIIRDLRL 498 Query 430 GTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 G ++L+ ++ EG+D+P ++V + G L NE ++Q GRA Sbjct 499 GVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRA 546 >sp|A2RE43|UVRB_STRPG UvrABC system protein B OS=Streptococcus pyogenes serotype M5 (strain Manfredo) OX=160491 GN=uvrB PE=3 SV=1 Length=663 Score = 38.9 bits (89), Expect = 0.19, Method: Compositional matrix adjust. Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 22/126 (17%) Query 352 EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ 411 ++L +I QR + R I T T++ A L +L++ +G Sbjct 438 DLLGEINQR---VARDERTFITTLTKKMAEDLTDYLKE--------------MGVKVKYM 480 Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMV 466 + + ++ E+I+ + G ++L+ ++ EG+D+P ++V + G L NE ++ Sbjct 481 HSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLI 540 Query 467 QARGRA 472 Q GRA Sbjct 541 QTIGRA 546 >sp|P67425|UVRB_STAAN UvrABC system protein B OS=Staphylococcus aureus (strain N315) OX=158879 GN=uvrB PE=1 SV=1 Length=663 Score = 38.9 bits (89), Expect = 0.19, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 6/76 (8%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGR-ARAD 475 E+I+ + GT +++V ++ EG+DIP ++VV + G L + S++Q GR AR D Sbjct 490 EIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAARND 549 Query 476 QSVYAFVATEGSRELK 491 + A + + +K Sbjct 550 KGEVIMYADKMTDSMK 565 >sp|P67424|UVRB_STAAM UvrABC system protein B OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) OX=158878 GN=uvrB PE=3 SV=1 Length=663 Score = 38.9 bits (89), Expect = 0.19, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 6/76 (8%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGR-ARAD 475 E+I+ + GT +++V ++ EG+DIP ++VV + G L + S++Q GR AR D Sbjct 490 EIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAARND 549 Query 476 QSVYAFVATEGSRELK 491 + A + + +K Sbjct 550 KGEVIMYADKMTDSMK 565 >sp|A7ESL7|DBP10_SCLS1 ATP-dependent RNA helicase dbp10 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 GN=dbp10 PE=3 SV=2 Length=920 Score = 38.9 bits (89), Expect = 0.19, Method: Compositional matrix adjust. Identities = 40/150 (27%), Positives = 67/150 (45%), Gaps = 15/150 (10%) Query 337 ELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTV 396 +L + T PEN L + +++ + P + + + HS +++ + V Sbjct 325 DLVKMPTGLPENA-LNATDNFSKKRKRGPDGPT----KKLKPTEHSTIIFAATKH---HV 376 Query 397 DIRAQLLIGAG----NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNV 452 D A LL +G ++ S T R+ Q ++ F+ G N+LV T VA G+DIP Sbjct 377 DYLASLLRMSGFAVSHAYGSLDQTARNIQ--VEDFRTGKSNILVVTDVAARGIDIPVLAN 434 Query 453 VVRYGLLTNEISMVQARGR-ARADQSVYAF 481 V+ Y V GR ARA Q +++ Sbjct 435 VINYDFPPQPKVFVHRVGRTARAGQRGWSY 464 >sp|Q8DYL6|UVRB_STRA5 UvrABC system protein B OS=Streptococcus agalactiae serotype V (strain ATCC BAA-611 / 2603 V/R) OX=208435 GN=uvrB PE=3 SV=1 Length=663 Score = 38.9 bits (89), Expect = 0.19, Method: Compositional matrix adjust. Identities = 24/108 (22%), Positives = 50/108 (46%), Gaps = 7/108 (6%) Query 370 GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD 429 G I RT + + + L ++ D ++ G + + ++ E+I+ + Sbjct 441 GEINLRTEKGERTFITTLTKRMAEDLTDYLKEM--GVKVKYMHSDIKTLERTEIIRDLRL 498 Query 430 GTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 G ++L+ ++ EG+D+P ++V + G L NE ++Q GRA Sbjct 499 GVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRA 546 >sp|Q8E471|UVRB_STRA3 UvrABC system protein B OS=Streptococcus agalactiae serotype III (strain NEM316) OX=211110 GN=uvrB PE=3 SV=1 Length=663 Score = 38.9 bits (89), Expect = 0.19, Method: Compositional matrix adjust. Identities = 24/108 (22%), Positives = 50/108 (46%), Gaps = 7/108 (6%) Query 370 GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD 429 G I RT + + + L ++ D ++ G + + ++ E+I+ + Sbjct 441 GEINLRTEKGERTFITTLTKRMAEDLTDYLKEM--GVKVKYMHSDIKTLERTEIIRDLRL 498 Query 430 GTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 G ++L+ ++ EG+D+P ++V + G L NE ++Q GRA Sbjct 499 GVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRA 546 >sp|Q0TUD0|UVRB_CLOP1 UvrABC system protein B OS=Clostridium perfringens (strain ATCC 13124 / DSM 756 / JCM 1290 / NCIMB 6125 / NCTC 8237 / Type A) OX=195103 GN=uvrB PE=3 SV=1 Length=659 Score = 38.9 bits (89), Expect = 0.20, Method: Compositional matrix adjust. Identities = 29/124 (23%), Positives = 63/124 (51%), Gaps = 25/124 (20%) Query 354 LEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQST 413 +++ +QR F R +I T T++ A L +L+ ++++A + + Sbjct 437 IQRTVQRGF------RVLITTLTKRMAEDLTKYLKD------LNVKATYM--------HS 476 Query 414 HMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQA 468 + ++ ++I++ + G +++L+ ++ EGLDIP +V + G L +E S++Q Sbjct 477 DIDTLERMKIIRELRLGEVDVLIGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQT 536 Query 469 RGRA 472 GRA Sbjct 537 IGRA 540 >sp|B5XLX7|UVRB_STRPZ UvrABC system protein B OS=Streptococcus pyogenes serotype M49 (strain NZ131) OX=471876 GN=uvrB PE=3 SV=1 Length=663 Score = 38.9 bits (89), Expect = 0.20, Method: Compositional matrix adjust. Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 22/126 (17%) Query 352 EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ 411 ++L +I QR + R I T T++ A L +L++ +G Sbjct 438 DLLGEINQR---VARDERTFITTLTKKMAEDLTDYLKE--------------MGVKVKYM 480 Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMV 466 + + ++ E+I+ + G ++L+ ++ EG+D+P ++V + G L NE ++ Sbjct 481 HSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLI 540 Query 467 QARGRA 472 Q GRA Sbjct 541 QTIGRA 546 >sp|Q99ZA5|UVRB_STRP1 UvrABC system protein B OS=Streptococcus pyogenes serotype M1 OX=301447 GN=uvrB PE=3 SV=1 Length=663 Score = 38.9 bits (89), Expect = 0.20, Method: Compositional matrix adjust. Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 22/126 (17%) Query 352 EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ 411 ++L +I QR + R I T T++ A L +L++ +G Sbjct 438 DLLGEINQR---VARDERTFITTLTKKMAEDLTDYLKE--------------MGVKVKYM 480 Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMV 466 + + ++ E+I+ + G ++L+ ++ EG+D+P ++V + G L NE ++ Sbjct 481 HSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLI 540 Query 467 QARGRA 472 Q GRA Sbjct 541 QTIGRA 546 >sp|Q6GIN3|UVRB_STAAR UvrABC system protein B OS=Staphylococcus aureus (strain MRSA252) OX=282458 GN=uvrB PE=3 SV=1 Length=663 Score = 38.9 bits (89), Expect = 0.20, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 6/76 (8%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGR-ARAD 475 E+I+ + GT +++V ++ EG+DIP ++VV + G L + S++Q GR AR D Sbjct 490 EIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAARND 549 Query 476 QSVYAFVATEGSRELK 491 + A + + +K Sbjct 550 KGEVIMYADKMTDSMK 565 >sp|Q5HHR0|UVRB_STAAC UvrABC system protein B OS=Staphylococcus aureus (strain COL) OX=93062 GN=uvrB PE=3 SV=1 Length=663 Score = 38.9 bits (89), Expect = 0.20, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 6/76 (8%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGR-ARAD 475 E+I+ + GT +++V ++ EG+DIP ++VV + G L + S++Q GR AR D Sbjct 490 EIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAARND 549 Query 476 QSVYAFVATEGSRELK 491 + A + + +K Sbjct 550 KGEVIMYADKMTDSMK 565 >sp|P45128|MFD_HAEIN Transcription-repair-coupling factor OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=mfd PE=3 SV=1 Length=1146 Score = 38.9 bits (89), Expect = 0.20, Method: Compositional matrix adjust. Identities = 25/100 (25%), Positives = 50/100 (50%), Gaps = 16/100 (16%) Query 400 AQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV----- 454 A++++G G M +R+ + V+ F N+LV +++ E G+D+P N ++ Sbjct 838 ARVIVGHG------QMRERELERVMSDFYHQRYNVLVCSTIIETGIDVPTANTIIIERAD 891 Query 455 RYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRE 493 +GL + Q RGR R+ YA++ T + + ++ Sbjct 892 HFGL----AQLHQLRGRVGRSHHQAYAYLLTPPPKMMTKD 927 >sp|Q1DP69|DBP2_COCIM ATP-dependent RNA helicase DBP2 OS=Coccidioides immitis (strain RS) OX=246410 GN=DBP2 PE=3 SV=2 Length=545 Score = 38.5 bits (88), Expect = 0.20, Method: Compositional matrix adjust. Identities = 39/154 (25%), Positives = 72/154 (47%), Gaps = 23/154 (15%) Query 351 LEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSS 410 + LE+I+ + S + +IFT T++ A + +L+Q G + I G+ Sbjct 364 INHLERIMDDKKS-----KILIFTGTKRVADDITRFLRQD-GWPALSIH-------GDKQ 410 Query 411 QSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE---ISMVQ 467 Q+ +RD V+ +F+ G ++VAT VA G+D+ V+ Y N + + Sbjct 411 QN----ERDW--VLNEFKTGKSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIG 464 Query 468 ARGRARADQSVYAFVATEGSRELKRELINEALET 501 GRA A + T+ +++ R+L+N E+ Sbjct 465 RTGRAGAKGTAITLFTTDNAKQ-ARDLVNILTES 497 >sp|Q4P9P3|DRS1_USTMA ATP-dependent RNA helicase DRS1 OS=Ustilago maydis (strain 521 / FGSC 9021) OX=237631 GN=DRS1 PE=3 SV=1 Length=932 Score = 38.9 bits (89), Expect = 0.20, Method: Compositional matrix adjust. Identities = 26/106 (25%), Positives = 46/106 (43%), Gaps = 18/106 (17%) Query 353 MLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQS 412 +L + R F+S +IF R+++ AH L + L+G Sbjct 601 LLLSLCTRTFTSQT----MIFVRSKKLAHQLKIVFG--------------LLGLSAGELH 642 Query 413 THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL 458 ++Q + + + F+DG + L+AT +A GLDI V+ Y + Sbjct 643 GDLSQEQRIDALTDFRDGKTDFLLATDLASRGLDIKGVQTVINYDM 688 >sp|Q46323|UVRB_CLOPE UvrABC system protein B OS=Clostridium perfringens (strain 13 / Type A) OX=195102 GN=uvrB PE=3 SV=2 Length=659 Score = 38.5 bits (88), Expect = 0.20, Method: Compositional matrix adjust. Identities = 29/124 (23%), Positives = 63/124 (51%), Gaps = 25/124 (20%) Query 354 LEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQST 413 +++ +QR F R +I T T++ A L +L+ ++++A + + Sbjct 437 IQRTVQRGF------RVLITTLTKRMAEDLTKYLKD------LNVKATYM--------HS 476 Query 414 HMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQA 468 + ++ ++I++ + G +++L+ ++ EGLDIP +V + G L +E S++Q Sbjct 477 DIDTLERMKIIRELRLGEVDVLIGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQT 536 Query 469 RGRA 472 GRA Sbjct 537 IGRA 540 >sp|A5DK47|DBP6_PICGU ATP-dependent RNA helicase DBP6 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DBP6 PE=3 SV=2 Length=631 Score = 38.5 bits (88), Expect = 0.20, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 8/125 (6%) Query 411 QSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARG 470 ST+ + ++++ F + T+++LV T + G+DI V+ Y L + V G Sbjct 501 NSTNNAASTRAKILKDFANQTVHILVVTDLIARGIDIATITNVINYDLPNSSRDYVHRVG 560 Query 471 R-ARADQSVYAFVATEGSRELK------RELINEALETLMEQAV-AAVQKMDQAEYQAKI 522 R ARA+Q A+ G E K RE+ + +E+ V + D+A+Y + Sbjct 561 RTARANQDGEAYTMCFGKGETKWFTQLVREVSRQTEVKDVEKGFRDLVSREDEAKYDTCL 620 Query 523 RDLQQ 527 +LQ+ Sbjct 621 EELQR 625 >sp|Q8R8M4|UVRB_CALS4 UvrABC system protein B OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) OX=273068 GN=uvrB PE=3 SV=1 Length=662 Score = 38.5 bits (88), Expect = 0.20, Method: Compositional matrix adjust. Identities = 19/56 (34%), Positives = 32/56 (57%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + G ++L+ ++ EGLDIP +V + G L +E S++Q GRA Sbjct 485 EIIRDLRLGKFDVLIGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGRA 540 >sp|Q3A8D0|UVRB_SYNC1 UvrABC system protein B OS=Syntrophotalea carbinolica (strain DSM 2380 / NBRC 103641 / GraBd1) OX=338963 GN=uvrB PE=3 SV=1 Length=667 Score = 38.5 bits (88), Expect = 0.20, Method: Compositional matrix adjust. Identities = 18/59 (31%), Positives = 37/59 (63%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ +++++ ++G ++LV ++ EGLDIP ++V + G L +E S++Q GRA Sbjct 483 ERMQILRELREGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTCGRA 541 >sp|Q8NXM0|UVRB_STAAW UvrABC system protein B OS=Staphylococcus aureus (strain MW2) OX=196620 GN=uvrB PE=3 SV=1 Length=663 Score = 38.5 bits (88), Expect = 0.20, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 6/76 (8%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGR-ARAD 475 E+I+ + GT +++V ++ EG+DIP ++VV + G L + S++Q GR AR D Sbjct 490 EIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAARND 549 Query 476 QSVYAFVATEGSRELK 491 + A + + +K Sbjct 550 KGEVIMYADKMTDSMK 565 >sp|Q6GB72|UVRB_STAAS UvrABC system protein B OS=Staphylococcus aureus (strain MSSA476) OX=282459 GN=uvrB PE=3 SV=1 Length=663 Score = 38.5 bits (88), Expect = 0.20, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 6/76 (8%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGR-ARAD 475 E+I+ + GT +++V ++ EG+DIP ++VV + G L + S++Q GR AR D Sbjct 490 EIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAARND 549 Query 476 QSVYAFVATEGSRELK 491 + A + + +K Sbjct 550 KGEVIMYADKMTDSMK 565 >sp|P0CQ76|DBP2_CRYNJ ATP-dependent RNA helicase DBP2-A OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=DBP2 PE=3 SV=1 Length=540 Score = 38.5 bits (88), Expect = 0.20, Method: Compositional matrix adjust. Identities = 43/168 (26%), Positives = 68/168 (40%), Gaps = 37/168 (22%) Query 331 FDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQ 390 FD R L+HL EN K+ +IF T++ A L +L+ Sbjct 339 FDKRSKLLSHLEKISQENGKV-------------------LIFVATKRVADDLTKFLRMD 379 Query 391 QGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHC 450 G + I G+ Q+ +RD V+ +F+ G +++AT VA GLD+ Sbjct 380 -GWPALAIH-------GDKQQA----ERDW--VLAEFKSGRSPIMLATDVASRGLDVRDI 425 Query 451 NVVVRYGLLTN---EISMVQARGRARADQSVYAFVATEGSRELKRELI 495 V+ Y N I + GRA + Y + + S+ REL+ Sbjct 426 GYVINYDFPNNCEDYIHRIGRTGRAGRKGTSYTYFTMDNSKA-ARELV 472 >sp|P0CQ77|DBP2_CRYNB ATP-dependent RNA helicase DBP2-A OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=DBP2 PE=3 SV=1 Length=540 Score = 38.5 bits (88), Expect = 0.20, Method: Compositional matrix adjust. Identities = 43/168 (26%), Positives = 68/168 (40%), Gaps = 37/168 (22%) Query 331 FDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQ 390 FD R L+HL EN K+ +IF T++ A L +L+ Sbjct 339 FDKRSKLLSHLEKISQENGKV-------------------LIFVATKRVADDLTKFLRMD 379 Query 391 QGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHC 450 G + I G+ Q+ +RD V+ +F+ G +++AT VA GLD+ Sbjct 380 -GWPALAIH-------GDKQQA----ERDW--VLAEFKSGRSPIMLATDVASRGLDVRDI 425 Query 451 NVVVRYGLLTN---EISMVQARGRARADQSVYAFVATEGSRELKRELI 495 V+ Y N I + GRA + Y + + S+ REL+ Sbjct 426 GYVINYDFPNNCEDYIHRIGRTGRAGRKGTSYTYFTMDNSKA-ARELV 472 >sp|F4INA9|RECG_ARATH ATP-dependent DNA helicase homolog RECG, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RECG PE=3 SV=1 Length=973 Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust. Identities = 24/84 (29%), Positives = 42/84 (50%), Gaps = 10/84 (12%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQAR 469 M D++E + KF+ G +L++T V E G+D+P +++V R+G+ + Q R Sbjct 806 MKSDDKEEALNKFRSGETQILLSTQVIEIGVDVPDASMMVVMNAERFGI----AQLHQLR 861 Query 470 GR-ARADQSVYAFVATEGSRELKR 492 GR R + + + LKR Sbjct 862 GRVGRGTRKSKCLLVGSSTNSLKR 885 >sp|Q83S42|UVRB_SHIFL UvrABC system protein B OS=Shigella flexneri OX=623 GN=uvrB PE=3 SV=1 Length=673 Score = 38.5 bits (88), Expect = 0.21, Method: Compositional matrix adjust. Identities = 25/90 (28%), Positives = 44/90 (49%), Gaps = 15/90 (17%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA- 472 ++ E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 Query 473 ---------RADQSVYAFVATEGSRELKRE 493 D+S + G E +RE Sbjct 544 RNVNGKAILYGDRSTPSMAKAIGETERRRE 573 >sp|Q0T6I1|UVRB_SHIF8 UvrABC system protein B OS=Shigella flexneri serotype 5b (strain 8401) OX=373384 GN=uvrB PE=3 SV=1 Length=673 Score = 38.5 bits (88), Expect = 0.21, Method: Compositional matrix adjust. Identities = 25/90 (28%), Positives = 44/90 (49%), Gaps = 15/90 (17%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA- 472 ++ E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 Query 473 ---------RADQSVYAFVATEGSRELKRE 493 D+S + G E +RE Sbjct 544 RNVNGKAILYGDRSTPSMAKAIGETERRRE 573 >sp|Q5K5B6|RH57_ORYSJ DEAD-box ATP-dependent RNA helicase 57 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0647900 PE=2 SV=2 Length=540 Score = 38.5 bits (88), Expect = 0.21, Method: Compositional matrix adjust. Identities = 31/143 (22%), Positives = 64/143 (45%), Gaps = 20/143 (14%) Query 358 LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ 417 L++ F+ S +P +IF ++++ A L + L D+RA ++ + + Sbjct 376 LRQSFAESLNPPVLIFVQSKERAKELY------KELAFDDVRADVI--------HADLDE 421 Query 418 RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA----R 473 +Q+ + + G +L+AT V G+D N V+ Y + + + GR+ R Sbjct 422 EQRQDAVDNLRAGKTWVLIATEVIARGMDFKGVNCVINYDFPESASAYIHRIGRSGRAGR 481 Query 474 ADQSVYAFVATEGSRELKRELIN 496 + +++ F TE + R + N Sbjct 482 SGEAITFF--TEEDKPFLRNIAN 502 Score = 37.7 bits (86), Expect = 0.35, Method: Compositional matrix adjust. Identities = 37/144 (26%), Positives = 64/144 (44%), Gaps = 9/144 (6%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAY--VAKRHLETVDGAKVVVLVNRVHLVTQHG 64 Q + I L G+ PTG+GKT A + + K + +G K V+L L Q Sbjct 173 QRQAIPILLSGRECFACAPTGSGKTLAFLFPILMKIKPGSKEGVKAVILCPTRELAAQTT 232 Query 65 EEFRRMLDGR-WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELT 123 E +++ GR + + ++ D+ F + C D+LI T L A+ ++ ++L+ Sbjct 233 RECKKLAKGRKFYIKLMTKDLSKSGNFKDM-HC-DILISTPLRLDHAV----QKRDLDLS 286 Query 124 VFSLIVVDECHHTHKDTVYNVIMS 147 +V+DE + VI S Sbjct 287 RVEYLVLDESDKLFELGFVEVIDS 310 >sp|A4WG30|RHLB_ENT38 ATP-dependent RNA helicase RhlB OS=Enterobacter sp. (strain 638) OX=399742 GN=rhlB PE=3 SV=1 Length=421 Score = 38.5 bits (88), Expect = 0.21, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +++ ++ R IIF T+ + W L R LL G Sbjct 243 KMRLLQTLIEEEWPD----RAIIFANTKHRCEDI--WGH----LAADGHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q+ + +++ F G L++LVAT VA GL IP V Y L + V Sbjct 289 ----DVAQKKRLRILEDFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI 344 Query 470 GR-ARADQSVYAF 481 GR RA S ++ Sbjct 345 GRTGRAGASGHSI 357 >sp|Q7UZL3|UVRB_PROMP UvrABC system protein B OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / NIES-2087 / MED4) OX=59919 GN=uvrB PE=3 SV=1 Length=679 Score = 38.5 bits (88), Expect = 0.21, Method: Compositional matrix adjust. Identities = 25/79 (32%), Positives = 41/79 (52%), Gaps = 6/79 (8%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGR-ARAD 475 E+IQ + G ++LV ++ EGLD+P ++V + G L E S++Q GR AR Sbjct 485 EIIQDLRLGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAARHV 544 Query 476 QSVYAFVATEGSRELKREL 494 + V A + +KR + Sbjct 545 EGVALLYADNFTESMKRAI 563 >sp|Q9UJV9|DDX41_HUMAN Probable ATP-dependent RNA helicase DDX41 OS=Homo sapiens OX=9606 GN=DDX41 PE=1 SV=2 Length=622 Score = 38.5 bits (88), Expect = 0.21, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 7/83 (8%) Query 396 VDIRAQLLIGAGNSSQSTHMTQRDQQE---VIQKFQDGTLNLLVATSVAEEGLDIPHCNV 452 VD + L+ G + + H +DQ+E I+ F++G ++LVAT VA +GLD P Sbjct 445 VDAIHEYLLLKGVEAVAIH-GGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQH 503 Query 453 VVRYGL---LTNEISMVQARGRA 472 V+ Y + + N + + GR+ Sbjct 504 VINYDMPEEIENYVHRIGRTGRS 526 >sp|A2RIP3|UVRB_LACLM UvrABC system protein B OS=Lactococcus lactis subsp. cremoris (strain MG1363) OX=416870 GN=uvrB PE=3 SV=1 Length=692 Score = 38.5 bits (88), Expect = 0.21, Method: Compositional matrix adjust. Identities = 29/126 (23%), Positives = 61/126 (48%), Gaps = 19/126 (15%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRAR 473 ++ E+I+ + G ++LV ++ EG+D+P ++V + G L NE ++Q GRA Sbjct 489 ERTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAA 548 Query 474 ADQSVYAFVATEGSREL------KRELINEALETLMEQAVAAVQK-----MDQAEYQAKI 522 + + + ++ ++ L +E+++ T E + + MD+ A+ Sbjct 549 RNSEGHVILYSDMAKALDENDPADKEILDSGYYTEYEGKKYKITRSMKHAMDET---ARR 605 Query 523 RDLQQA 528 RD+Q A Sbjct 606 RDIQMA 611 >sp|Q61496|DDX4_MOUSE ATP-dependent RNA helicase DDX4 OS=Mus musculus OX=10090 GN=Ddx4 PE=1 SV=2 Length=702 Score = 38.5 bits (88), Expect = 0.22, Method: Compositional matrix adjust. Identities = 31/130 (24%), Positives = 57/130 (44%), Gaps = 17/130 (13%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 R ++F T++ A + +L Q++ + T I QR++++ + F+ Sbjct 515 RTMVFVETKKKADFIATFLCQEK-ISTTSIHGD-------------REQREREQALGDFR 560 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGRARADQSVYAFVATE 485 G +LVATSVA GLDI + V+ + L + + + GR +F T+ Sbjct 561 CGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDTD 620 Query 486 GSRELKRELI 495 L + L+ Sbjct 621 SDNHLAQPLV 630 >sp|B9DSH1|UVRB_STRU0 UvrABC system protein B OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) OX=218495 GN=uvrB PE=3 SV=1 Length=663 Score = 38.5 bits (88), Expect = 0.22, Method: Compositional matrix adjust. Identities = 25/109 (23%), Positives = 50/109 (46%), Gaps = 19/109 (17%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 R I T T++ A L +L++ +G + + ++ E+I+ + Sbjct 452 RTFITTLTKKMAEDLTDYLKE--------------MGVKVKYMHSDIKTLERTEIIRDLR 497 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 G ++L+ ++ EG+D+P ++V + G L NE ++Q GRA Sbjct 498 LGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRA 546 >sp|Q8CGS6|DPOLQ_MOUSE DNA polymerase theta OS=Mus musculus OX=10090 GN=Polq PE=1 SV=2 Length=2544 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 38/154 (25%), Positives = 70/154 (45%), Gaps = 17/154 (11%) Query 4 RSYQWE----VIMPALEGKNIIIWLPTGAGKTRAAA-YVAKRHLETVDGAKVVVLVNRVH 58 + ++W+ ++ LEGKN++ PT AGKT A + KR LET K + ++ V Sbjct 90 KMFEWQAECLLLGHVLEGKNLVYSAPTSAGKTLVAELLILKRVLETR--KKALFILPFVS 147 Query 59 LVTQHGEEFRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE 117 + + + + + V G P F L D+ +CT E + EE Sbjct 148 VAKEKKCYLQSLFQEVGLKVDGYMGSTSPTGQFSSL----DIAVCTIERANGLVNRLIEE 203 Query 118 EHVELTVFSLIVVDECH---HTHKDTVYNVIMSQ 148 ++L ++VVDE H +H+ + +++++ Sbjct 204 NKMDL--LGMVVVDELHMLGDSHRGYLLELLLTK 235 >sp|P44922|RHLB_HAEIN ATP-dependent RNA helicase RhlB OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=rhlB PE=3 SV=2 Length=415 Score = 38.5 bits (88), Expect = 0.22, Method: Compositional matrix adjust. Identities = 23/64 (36%), Positives = 34/64 (53%), Gaps = 1/64 (2%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR 473 + Q+ + ++++F DG L++LVAT VA GL I V Y L + V GR R Sbjct 289 VAQKKRLSLLKQFTDGDLDILVATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGR 348 Query 474 ADQS 477 A +S Sbjct 349 AGES 352 >sp|Q53RK8|RH21_ORYSJ DEAD-box ATP-dependent RNA helicase 21 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0708600 PE=2 SV=1 Length=736 Score = 38.5 bits (88), Expect = 0.22, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 22/117 (19%) Query 347 ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA 406 E+ K+ L+KIL + P I+F T++SA D RA+ L A Sbjct 562 ESEKMSRLQKILT---DLGDKP-AIVFCNTKKSA----------------DARAKDLDKA 601 Query 407 GNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN 461 G + H +Q ++ + F++ +LVAT VA G+DIP V+ Y + ++ Sbjct 602 GFRVTTLHGGKSQEQRETSLDGFRNRRFTVLVATDVAGRGIDIPDVAHVINYEMPSS 658 >sp|A6QXC1|DBP3_AJECN ATP-dependent RNA helicase DBP3 OS=Ajellomyces capsulatus (strain NAm1 / WU24) OX=2059318 GN=DBP3 PE=3 SV=1 Length=487 Score = 38.5 bits (88), Expect = 0.22, Method: Compositional matrix adjust. Identities = 29/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (7%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL-LTNE--ISMVQARGR 471 M Q ++ + F+ G++ +LVAT VA GLDIP +V+ LT E + + GR Sbjct 356 MNQTERFNSLDAFKSGSVPVLVATDVAARGLDIPAVKLVLNVTFPLTVEDYVHRIGRTGR 415 Query 472 ARADQ-SVYAFVATEGSRELKRELIN 496 A +D ++ F TE + L L+N Sbjct 416 AGSDGLAITMF--TENDKALSGGLVN 439 >sp|Q8CPZ0|UVRB_STAES UvrABC system protein B OS=Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200) OX=176280 GN=uvrB PE=3 SV=1 Length=661 Score = 38.5 bits (88), Expect = 0.22, Method: Compositional matrix adjust. Identities = 19/56 (34%), Positives = 34/56 (61%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + GT + +V ++ EG+DIP ++VV + G L ++ S++Q GRA Sbjct 488 EIIRDLRMGTYDAIVGINLLREGIDIPEVSLVVILDADKEGFLRSDRSLIQTIGRA 543 >sp|Q6BZ77|DBP3_DEBHA ATP-dependent RNA helicase DBP3 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DBP3 PE=3 SV=1 Length=527 Score = 38.5 bits (88), Expect = 0.22, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 41/84 (49%), Gaps = 2/84 (2%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR 473 ++Q+ + + F+ G LL+AT VA GLDIP+ VV+ V GR R Sbjct 397 LSQQQRTSALGAFKAGKTTLLLATDVAARGLDIPNVKVVINLTFPLTVEDYVHRIGRTGR 456 Query 474 ADQSVYAF-VATEGSRELKRELIN 496 A Q+ A + TE + L L+N Sbjct 457 AGQTGIAHTLFTEHEKHLSGALMN 480 >sp|Q55D61|IF4A_DICDI Eukaryotic initiation factor 4A OS=Dictyostelium discoideum OX=44689 GN=tifA PE=3 SV=1 Length=405 Score = 38.1 bits (87), Expect = 0.22, Method: Compositional matrix adjust. Identities = 16/64 (25%), Positives = 36/64 (56%), Gaps = 0/64 (0%) Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 +S M Q++++E+I+ F+ G +L+ T + G+D+ ++V+ Y L + + + Sbjct 299 ASMHGDMVQKEREEIIKSFRSGENRVLITTDILARGIDVQQVSLVINYDLPIDRENYIHR 358 Query 469 RGRA 472 GR+ Sbjct 359 IGRS 362 >sp|A3LX02|SPB4_PICST ATP-dependent rRNA helicase SPB4 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) OX=322104 GN=SPB4 PE=3 SV=2 Length=617 Score = 38.5 bits (88), Expect = 0.22, Method: Compositional matrix adjust. Identities = 33/108 (31%), Positives = 51/108 (47%), Gaps = 7/108 (6%) Query 423 VIQKFQDGTLNL----LVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQS 477 +Q F DG + L L+ T VA G+DIP ++V++ T+ + GR RA++ Sbjct 324 TLQSFTDGDVALNKHILMTTDVAARGIDIPDVDLVIQLDPPTDPDVFLHRCGRTGRANKV 383 Query 478 VYAFVA-TEGSRELKRELINEALETLM-EQAVAAVQKMDQAEYQAKIR 523 A V +GSREL E M E + + D ++Q K+R Sbjct 384 GRAIVMLNDGSRELDYVDFMEVKGVAMQEMPTPDLNQSDHQQFQDKLR 431 >sp|B0SLS0|UVRB_LEPBP UvrABC system protein B OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) OX=456481 GN=uvrB PE=3 SV=1 Length=664 Score = 38.5 bits (88), Expect = 0.22, Method: Compositional matrix adjust. Identities = 20/59 (34%), Positives = 33/59 (56%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+I+ + G + +V ++ EGLDIP ++V + G L N S+VQ GRA Sbjct 482 ERTEIIRDLRKGVYDCIVGINLLREGLDIPEVSLVAILDADKEGFLRNYKSLVQTIGRA 540 >sp|B0SDE2|UVRB_LEPBA UvrABC system protein B OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) OX=355278 GN=uvrB PE=3 SV=1 Length=664 Score = 38.5 bits (88), Expect = 0.22, Method: Compositional matrix adjust. Identities = 20/59 (34%), Positives = 33/59 (56%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+I+ + G + +V ++ EGLDIP ++V + G L N S+VQ GRA Sbjct 482 ERTEIIRDLRKGVYDCIVGINLLREGLDIPEVSLVAILDADKEGFLRNYKSLVQTIGRA 540 >sp|P96614|CSHA_BACSU DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus subtilis (strain 168) OX=224308 GN=cshA PE=1 SV=2 Length=494 Score = 38.5 bits (88), Expect = 0.22, Method: Compositional matrix adjust. Identities = 40/140 (29%), Positives = 63/140 (45%), Gaps = 25/140 (18%) Query 347 ENPKLEMLEKILQRQFSSSNSPR-GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 E K + L ++L Q SP I+F RT++ VD A+ L Sbjct 225 ERKKFDTLTRLLDIQ-----SPELAIVFGRTKRR----------------VDELAEALNL 263 Query 406 AGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI 463 G +++ H +TQ + ++KF++G + +LVAT VA GLDI V + + + Sbjct 264 RGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPE 323 Query 464 SMVQARGR-ARADQSVYAFV 482 S V GR RA ++ A Sbjct 324 SYVHRIGRTGRAGKTGMAMT 343 >sp|Q82WA9|UVRB_NITEU UvrABC system protein B OS=Nitrosomonas europaea (strain ATCC 19718 / CIP 103999 / KCTC 2705 / NBRC 14298) OX=228410 GN=uvrB PE=3 SV=1 Length=695 Score = 38.5 bits (88), Expect = 0.22, Method: Compositional matrix adjust. Identities = 20/56 (36%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + G ++LV ++ EGLDIP ++V + G L +E S++Q GRA Sbjct 491 EIIRDLRLGKFDVLVGINLLREGLDIPEVSLVGILDADKEGFLRSERSLIQTMGRA 546 >sp|Q5HQX0|UVRB_STAEQ UvrABC system protein B OS=Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A) OX=176279 GN=uvrB PE=3 SV=1 Length=661 Score = 38.5 bits (88), Expect = 0.23, Method: Compositional matrix adjust. Identities = 19/56 (34%), Positives = 34/56 (61%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + GT + +V ++ EG+DIP ++VV + G L ++ S++Q GRA Sbjct 488 EIIRDLRMGTYDAIVGINLLREGIDIPEVSLVVILDADKEGFLRSDRSLIQTIGRA 543 >sp|B5YY28|RHLB_ECO5E ATP-dependent RNA helicase RhlB OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) OX=444450 GN=rhlB PE=3 SV=1 Length=421 Score = 38.1 bits (87), Expect = 0.23, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +++ ++ R IIF T+ + W L R LL G Sbjct 243 KMRLLQTLIEEEWPD----RAIIFANTKHRCEEI--WGH----LAADGHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q+ + ++ +F G L++LVAT VA GL IP V Y L + V Sbjct 289 ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI 344 Query 470 GR-ARADQSVYAF 481 GR RA S ++ Sbjct 345 GRTGRAGASGHSI 357 >sp|Q1J665|UVRB_STRPF UvrABC system protein B OS=Streptococcus pyogenes serotype M4 (strain MGAS10750) OX=370554 GN=uvrB PE=3 SV=1 Length=663 Score = 38.5 bits (88), Expect = 0.23, Method: Compositional matrix adjust. Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 22/126 (17%) Query 352 EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ 411 ++L +I QR + R I T T++ A L +L++ +G Sbjct 438 DLLGEINQR---VARDERTFITTLTKKMAEDLTDYLKE--------------MGVKVKYM 480 Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMV 466 + + ++ E+I+ + G ++L+ ++ EG+D+P ++V + G L NE ++ Sbjct 481 HSDIKTLERTEIIRDLRLGIFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLI 540 Query 467 QARGRA 472 Q GRA Sbjct 541 QTIGRA 546 >sp|Q0E3X4|RH35A_ORYSJ DEAD-box ATP-dependent RNA helicase 35A OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0150100 PE=2 SV=2 Length=627 Score = 38.5 bits (88), Expect = 0.23, Method: Compositional matrix adjust. Identities = 24/78 (31%), Positives = 40/78 (51%), Gaps = 2/78 (3%) Query 396 VDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV 453 VD + L+ G + + H Q +++ I+ F++G ++LVAT VA +GLD P V Sbjct 446 VDYIHEYLLLKGVEAVAIHGGKDQEERENAIEFFKNGKKDVLVATDVASKGLDFPDIQHV 505 Query 454 VRYGLLTNEISMVQARGR 471 + Y + + V GR Sbjct 506 INYDMPAEIENYVHRIGR 523 >sp|A3CNJ9|UVRB_STRSV UvrABC system protein B OS=Streptococcus sanguinis (strain SK36) OX=388919 GN=uvrB PE=3 SV=1 Length=662 Score = 38.5 bits (88), Expect = 0.23, Method: Compositional matrix adjust. Identities = 24/108 (22%), Positives = 50/108 (46%), Gaps = 7/108 (6%) Query 370 GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD 429 G I R ++ + + L ++ D ++ G + + ++ E+I+ + Sbjct 441 GEINARVEKNERTFITTLTKKMAEDLTDYFKEM--GVKVKYMHSDIKTLERTEIIRDLRL 498 Query 430 GTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 G ++LV ++ EG+D+P ++V + G L NE ++Q GRA Sbjct 499 GVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRA 546 >sp|P0CQ93|DRS1_CRYNB ATP-dependent RNA helicase DRS1 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=DRS1 PE=3 SV=1 Length=808 Score = 38.5 bits (88), Expect = 0.23, Method: Compositional matrix adjust. Identities = 46/191 (24%), Positives = 85/191 (45%), Gaps = 27/191 (14%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 IIF R++ AH + + L G + ++TQ + + + F+ G Sbjct 473 IIFFRSKALAHQMRIVFG--------------LFGLKAAELHGNLTQEQRLQALNDFKAG 518 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRY---GLLTNEISMVQARGRA-RADQSVYAFVATEG 486 T++ L+AT +A GLDI V+ Y G L V RA R +SV + E Sbjct 519 TVDYLLATDLASRGLDIKGVETVINYDMPGQLAQYTHRVGRTARAGRKGRSVS--LVGEA 576 Query 487 SRELKRELINEAL------ETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR 540 R++ + I +A + +AV A+++ + E++ I+++ + ++ + A Sbjct 577 DRKMLKAAIKQAEADQVRHRIIPSEAVTAMKEKLE-EFKDDIQEILKEEKEEKLLRQADM 635 Query 541 ENQRQQFPVEH 551 E ++ Q VEH Sbjct 636 EIKKGQNMVEH 646 >sp|P53327|ASCC3_YEAST RQC trigger complex helicase SLH1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=SLH1 PE=1 SV=2 Length=1967 Score = 38.5 bits (88), Expect = 0.24, Method: Compositional matrix adjust. Identities = 40/163 (25%), Positives = 72/163 (44%), Gaps = 22/163 (13%) Query 17 GKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWT 76 +N + PTG+GKT A +T G K+V + LV + R+ D R Sbjct 1155 NENAFVGSPTGSGKTIVAELAIWHAFKTFPGKKIVYIAPMKALVRE------RVDDWRKK 1208 Query 77 VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVE--------LTVFSLI 128 +T ++GD L D+ T + +T+PE+ + + + SLI Sbjct 1209 ITPVTGDKVVELTGDSLPDPKDVHDAT-----IVITTPEKFDGISRNWQTRKFVQDVSLI 1263 Query 129 VVDECHHTHKD--TVYNVIMSQYLELKLQRAQPLPQVLGLTAS 169 ++DE H D + +I+S+ + Q QP+ ++LG++ + Sbjct 1264 IMDEIHLLASDRGPILEMIVSRMNYISSQTKQPV-RLLGMSTA 1305 Score = 36.2 bits (82), Expect = 1.2, Method: Compositional matrix adjust. Identities = 41/174 (24%), Positives = 83/174 (48%), Gaps = 31/174 (18%) Query 17 GKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRW- 75 +N++I PTGAGKT A L ++ K +VN + + ++F+ + Sbjct 303 NENMLICAPTGAGKTDIAL------LTIINTIKQFSVVNGENEIDIQYDDFKVIYVAPLK 356 Query 76 -----TVTTLSGDMGPRAGFGHLAR--CHDLLICTAELL--QMALTSPEEEEHVE----- 121 V S + P F R D+ + AE+L Q+ +T+PE+ + V Sbjct 357 ALAAEIVDKFSKKLAP---FNIQVRELTGDMQLTKAEILATQVIVTTPEKWDVVTRKANG 413 Query 122 ----LTVFSLIVVDECHHTHKD--TVYNVIMSQYLELKLQRAQPLPQVLGLTAS 169 ++ L+++DE H H+D +V ++++ L +++ +Q + +++GL+A+ Sbjct 414 DNDLVSKVKLLIIDEVHLLHEDRGSVIETLVARTLR-QVESSQSMIRIIGLSAT 466 >sp|Q5KVB5|UVRB_GEOKA UvrABC system protein B OS=Geobacillus kaustophilus (strain HTA426) OX=235909 GN=uvrB PE=3 SV=1 Length=658 Score = 38.5 bits (88), Expect = 0.24, Method: Compositional matrix adjust. Identities = 20/56 (36%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + G ++LV ++ EGLDIP ++V + G L +E S++Q GRA Sbjct 486 EIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA 541 >sp|A5UI36|RHLB_HAEIG ATP-dependent RNA helicase RhlB OS=Haemophilus influenzae (strain PittGG) OX=374931 GN=rhlB PE=3 SV=1 Length=415 Score = 38.1 bits (87), Expect = 0.24, Method: Compositional matrix adjust. Identities = 23/64 (36%), Positives = 34/64 (53%), Gaps = 1/64 (2%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR 473 + Q+ + ++++F DG L++LVAT VA GL I V Y L + V GR R Sbjct 289 VAQKKRLSLLKQFTDGDLDILVATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGR 348 Query 474 ADQS 477 A +S Sbjct 349 AGES 352 >sp|Q91VN6|DDX41_MOUSE Probable ATP-dependent RNA helicase DDX41 OS=Mus musculus OX=10090 GN=Ddx41 PE=1 SV=2 Length=622 Score = 38.5 bits (88), Expect = 0.24, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 7/83 (8%) Query 396 VDIRAQLLIGAGNSSQSTHMTQRDQQE---VIQKFQDGTLNLLVATSVAEEGLDIPHCNV 452 VD + L+ G + + H +DQ+E I+ F++G ++LVAT VA +GLD P Sbjct 445 VDAIHEYLLLKGVEAVAIH-GGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQH 503 Query 453 VVRYGL---LTNEISMVQARGRA 472 V+ Y + + N + + GR+ Sbjct 504 VINYDMPEEIENYVHRIGRTGRS 526 >sp|P56981|UVRB_BACCA UvrABC system protein B OS=Bacillus caldotenax OX=1395 GN=uvrB PE=1 SV=2 Length=658 Score = 38.5 bits (88), Expect = 0.24, Method: Compositional matrix adjust. Identities = 20/56 (36%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + G ++LV ++ EGLDIP ++V + G L +E S++Q GRA Sbjct 486 EIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA 541 >sp|P37954|UVRB_BACSU UvrABC system protein B OS=Bacillus subtilis (strain 168) OX=224308 GN=uvrB PE=1 SV=2 Length=661 Score = 38.5 bits (88), Expect = 0.24, Method: Compositional matrix adjust. Identities = 20/56 (36%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + G ++LV ++ EGLDIP ++V + G L +E S++Q GRA Sbjct 486 EIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA 541 >sp|Q6BL34|DBP10_DEBHA ATP-dependent RNA helicase DBP10 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DBP10 PE=3 SV=2 Length=932 Score = 38.5 bits (88), Expect = 0.24, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 6/106 (6%) Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT--QRDQQEVIQKFQDGTLNLLV 436 S HS ++++ + ++ V LL AG + T Q +++ + +F+ G +LLV Sbjct 389 SKHSTIIFVPTKHHVEYV---TTLLKDAGYLVSYIYGTLDQHARKQQLYQFRIGMTSLLV 445 Query 437 ATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF 481 T VA G+DIP VV Y L + + GR ARA S +A+ Sbjct 446 VTDVAARGIDIPILANVVNYTLPGSSKIFIHRVGRTARAGNSGWAY 491 >sp|A5UDI1|RHLB_HAEIE ATP-dependent RNA helicase RhlB OS=Haemophilus influenzae (strain PittEE) OX=374930 GN=rhlB PE=3 SV=1 Length=415 Score = 38.1 bits (87), Expect = 0.24, Method: Compositional matrix adjust. Identities = 23/64 (36%), Positives = 34/64 (53%), Gaps = 1/64 (2%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR 473 + Q+ + ++++F DG L++LVAT VA GL I V Y L + V GR R Sbjct 289 VAQKKRLSLLKQFTDGDLDILVATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGR 348 Query 474 ADQS 477 A +S Sbjct 349 AGES 352 >sp|Q5JK84|RH15_ORYSJ DEAD-box ATP-dependent RNA helicase 15 OS=Oryza sativa subsp. japonica OX=39947 GN=AIP2 PE=1 SV=1 Length=432 Score = 38.1 bits (87), Expect = 0.24, Method: Compositional matrix adjust. Identities = 19/58 (33%), Positives = 32/58 (55%), Gaps = 0/58 (0%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA 472 MTQ ++ + F++G +LVAT + G+DI N+V+ Y + + S + GRA Sbjct 327 MTQEERLTRYKNFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADSYLHRVGRA 384 >sp|B1LLV3|RHLB_ECOSM ATP-dependent RNA helicase RhlB OS=Escherichia coli (strain SMS-3-5 / SECEC) OX=439855 GN=rhlB PE=3 SV=1 Length=421 Score = 38.1 bits (87), Expect = 0.24, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +++ ++ R IIF T+ + W L R LL G Sbjct 243 KMRLLQTLIEEEWPD----RAIIFANTKHRCEEI--WGH----LAADGHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q+ + ++ +F G L++LVAT VA GL IP V Y L + V Sbjct 289 ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI 344 Query 470 GR-ARADQSVYAF 481 GR RA S ++ Sbjct 345 GRTGRAGASGHSI 357 >sp|B2A713|UVRB_NATTJ UvrABC system protein B OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) OX=457570 GN=uvrB PE=3 SV=1 Length=658 Score = 38.5 bits (88), Expect = 0.24, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 482 ERMEIIRDLRLGKFDVLVGINLLREGLDLPEVSLVAILDADKEGYLRDERSLIQTMGRA 540 >sp|P0CQ92|DRS1_CRYNJ ATP-dependent RNA helicase DRS1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=DRS1 PE=3 SV=2 Length=793 Score = 38.5 bits (88), Expect = 0.24, Method: Compositional matrix adjust. Identities = 46/191 (24%), Positives = 85/191 (45%), Gaps = 27/191 (14%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 IIF R++ AH + + L G + ++TQ + + + F+ G Sbjct 458 IIFFRSKALAHQMRIVFG--------------LFGLKAAELHGNLTQEQRLQALNDFKAG 503 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRY---GLLTNEISMVQARGRA-RADQSVYAFVATEG 486 T++ L+AT +A GLDI V+ Y G L V RA R +SV + E Sbjct 504 TVDYLLATDLASRGLDIKGVETVINYDMPGQLAQYTHRVGRTARAGRKGRSVS--LVGEA 561 Query 487 SRELKRELINEAL------ETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR 540 R++ + I +A + +AV A+++ + E++ I+++ + ++ + A Sbjct 562 DRKMLKAAIKQAEADQVRHRIIPSEAVTAMKEKLE-EFKDDIQEILKEEKEEKLLRQADM 620 Query 541 ENQRQQFPVEH 551 E ++ Q VEH Sbjct 621 EIKKGQNMVEH 631 >sp|Q0JM17|RH56_ORYSJ DEAD-box ATP-dependent RNA helicase 56 OS=Oryza sativa subsp. japonica OX=39947 GN=AIP1 PE=1 SV=2 Length=432 Score = 38.1 bits (87), Expect = 0.24, Method: Compositional matrix adjust. Identities = 19/58 (33%), Positives = 32/58 (55%), Gaps = 0/58 (0%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA 472 MTQ ++ + F++G +LVAT + G+DI N+V+ Y + + S + GRA Sbjct 327 MTQEERLTRYKNFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADSYLHRVGRA 384 >sp|Q6FQU5|DHH1_CANGA ATP-dependent RNA helicase DHH1 OS=Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DHH1 PE=3 SV=1 Length=507 Score = 38.1 bits (87), Expect = 0.24, Method: Compositional matrix adjust. Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 11/111 (10%) Query 373 FTRTRQSAH---SLLLWLQQQQGL------QTVDIRAQLLIGAGNSSQSTH--MTQRDQQ 421 F RQ H +L LQ Q + V++ A+ + G S +H M Q+D+ Sbjct 249 FVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQDRN 308 Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA 472 +V F+ G + LV + + G+DI NVV+ + + + GR+ Sbjct 309 KVFHDFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRS 359 >sp|Q4L4I5|UVRB_STAHJ UvrABC system protein B OS=Staphylococcus haemolyticus (strain JCSC1435) OX=279808 GN=uvrB PE=3 SV=1 Length=661 Score = 38.5 bits (88), Expect = 0.25, Method: Compositional matrix adjust. Identities = 19/56 (34%), Positives = 34/56 (61%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + GT +++V ++ EG+DIP ++VV + G L + S++Q GRA Sbjct 488 EIIRDLRMGTYDVVVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRA 543 >sp|Q9V0A9|HELS_PYRAB ATP-dependent DNA helicase Hel308 OS=Pyrococcus abyssi (strain GE5 / Orsay) OX=272844 GN=hel308 PE=3 SV=1 Length=715 Score = 38.5 bits (88), Expect = 0.25, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 74/162 (46%), Gaps = 21/162 (13%) Query 15 LEGKNIIIWLPTGAGKTRAAAY-VAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDG 73 LEG+N+++ +PT +GKT A +A + LE +G K V +V L + EF+ Sbjct 37 LEGENLLVAIPTASGKTLIAEIAIANKLLE--EGGKAVYIVPLKALAEEKFREFKDWERL 94 Query 74 RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC 133 V +GD + + L + +D++I TAE L + ++V+DE Sbjct 95 GLKVAMATGDYDSKDEW--LGK-YDIIIATAEKFDSLLRHGSS----WIRDVKMLVIDEI 147 Query 134 H---HTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGT 172 H + I++Q L RA Q++GL+A+ G Sbjct 148 HLIGSRDRGATLEFIITQM----LGRA----QIIGLSATIGN 181 >sp|P10125|UVRB_MICLC UvrABC system protein B OS=Micrococcus luteus (strain ATCC 4698 / DSM 20030 / JCM 1464 / CCM 169 / CCUG 5858 / IAM 1056 / NBRC 3333 / NCIMB 9278 / NCTC 2665 / VKM Ac-2230) OX=465515 GN=uvrB PE=3 SV=3 Length=709 Score = 38.5 bits (88), Expect = 0.25, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 34/56 (61%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E++++ + GT ++LV ++ EGLD+P ++V + G L + S++Q GRA Sbjct 494 ELLRELRKGTFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRA 549 >sp|Q329V8|RHLB_SHIDS ATP-dependent RNA helicase RhlB OS=Shigella dysenteriae serotype 1 (strain Sd197) OX=300267 GN=rhlB PE=3 SV=1 Length=421 Score = 38.1 bits (87), Expect = 0.25, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +++ ++ R IIF T+ + W L R LL G Sbjct 243 KMRLLQTLIEEEWPD----RAIIFANTKHRCEEI--WGH----LAADGHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q+ + ++ +F G L++LVAT VA GL IP V Y L + V Sbjct 289 ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI 344 Query 470 GR-ARADQSVYAF 481 GR RA S ++ Sbjct 345 GRTGRAGASGHSI 357 >sp|Q92H58|MFD_RICCN Transcription-repair-coupling factor OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) OX=272944 GN=mfd PE=3 SV=1 Length=1122 Score = 38.5 bits (88), Expect = 0.25, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 2/78 (3%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS-MVQARGR-A 472 MT EV+ +F G ++LV+T++ E G+DI N ++ + +S + Q RGR Sbjct 827 MTPSKIDEVMSEFYAGKFDILVSTTIIESGIDIAEANTMIIHNADMLGLSQLYQLRGRIG 886 Query 473 RADQSVYAFVATEGSREL 490 R YA++ +++ Sbjct 887 RGKMRGYAYLTVASHKKM 904 >sp|P0A2P0|RHLB_SALTY ATP-dependent RNA helicase RhlB OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=rhlB PE=3 SV=2 Length=421 Score = 38.1 bits (87), Expect = 0.25, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +++ ++ R IIF T+ + W L R LL G Sbjct 243 KMRLLQTLIEEEWPD----RAIIFANTKHRCEDI--WGH----LAADGHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q+ + ++ +F G L++LVAT VA GL IP V Y L + V Sbjct 289 ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI 344 Query 470 GR-ARADQSVYAF 481 GR RA S ++ Sbjct 345 GRTGRAGASGHSI 357 >sp|P0A2P1|RHLB_SALTI ATP-dependent RNA helicase RhlB OS=Salmonella typhi OX=90370 GN=rhlB PE=3 SV=2 Length=421 Score = 38.1 bits (87), Expect = 0.25, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +++ ++ R IIF T+ + W L R LL G Sbjct 243 KMRLLQTLIEEEWPD----RAIIFANTKHRCEDI--WGH----LAADGHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q+ + ++ +F G L++LVAT VA GL IP V Y L + V Sbjct 289 ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI 344 Query 470 GR-ARADQSVYAF 481 GR RA S ++ Sbjct 345 GRTGRAGASGHSI 357 >sp|B4TNT3|RHLB_SALSV ATP-dependent RNA helicase RhlB OS=Salmonella schwarzengrund (strain CVM19633) OX=439843 GN=rhlB PE=3 SV=1 Length=421 Score = 38.1 bits (87), Expect = 0.25, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +++ ++ R IIF T+ + W L R LL G Sbjct 243 KMRLLQTLIEEEWPD----RAIIFANTKHRCEDI--WGH----LAADGHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q+ + ++ +F G L++LVAT VA GL IP V Y L + V Sbjct 289 ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI 344 Query 470 GR-ARADQSVYAF 481 GR RA S ++ Sbjct 345 GRTGRAGASGHSI 357 >sp|C0Q2V9|RHLB_SALPC ATP-dependent RNA helicase RhlB OS=Salmonella paratyphi C (strain RKS4594) OX=476213 GN=rhlB PE=3 SV=1 Length=421 Score = 38.1 bits (87), Expect = 0.25, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +++ ++ R IIF T+ + W L R LL G Sbjct 243 KMRLLQTLIEEEWPD----RAIIFANTKHRCEDI--WGH----LAADGHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q+ + ++ +F G L++LVAT VA GL IP V Y L + V Sbjct 289 ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI 344 Query 470 GR-ARADQSVYAF 481 GR RA S ++ Sbjct 345 GRTGRAGASGHSI 357 >sp|A9MXF3|RHLB_SALPB ATP-dependent RNA helicase RhlB OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) OX=1016998 GN=rhlB PE=3 SV=1 Length=421 Score = 38.1 bits (87), Expect = 0.25, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +++ ++ R IIF T+ + W L R LL G Sbjct 243 KMRLLQTLIEEEWPD----RAIIFANTKHRCEDI--WGH----LAADGHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q+ + ++ +F G L++LVAT VA GL IP V Y L + V Sbjct 289 ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI 344 Query 470 GR-ARADQSVYAF 481 GR RA S ++ Sbjct 345 GRTGRAGASGHSI 357 >sp|B4SZ26|RHLB_SALNS ATP-dependent RNA helicase RhlB OS=Salmonella newport (strain SL254) OX=423368 GN=rhlB PE=3 SV=1 Length=421 Score = 38.1 bits (87), Expect = 0.25, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +++ ++ R IIF T+ + W L R LL G Sbjct 243 KMRLLQTLIEEEWPD----RAIIFANTKHRCEDI--WGH----LAADGHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q+ + ++ +F G L++LVAT VA GL IP V Y L + V Sbjct 289 ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI 344 Query 470 GR-ARADQSVYAF 481 GR RA S ++ Sbjct 345 GRTGRAGASGHSI 357 >sp|B4TB13|RHLB_SALHS ATP-dependent RNA helicase RhlB OS=Salmonella heidelberg (strain SL476) OX=454169 GN=rhlB PE=3 SV=1 Length=421 Score = 38.1 bits (87), Expect = 0.25, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +++ ++ R IIF T+ + W L R LL G Sbjct 243 KMRLLQTLIEEEWPD----RAIIFANTKHRCEDI--WGH----LAADGHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q+ + ++ +F G L++LVAT VA GL IP V Y L + V Sbjct 289 ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI 344 Query 470 GR-ARADQSVYAF 481 GR RA S ++ Sbjct 345 GRTGRAGASGHSI 357 >sp|B5RFS3|RHLB_SALG2 ATP-dependent RNA helicase RhlB OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) OX=550538 GN=rhlB PE=3 SV=1 Length=421 Score = 38.1 bits (87), Expect = 0.25, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +++ ++ R IIF T+ + W L R LL G Sbjct 243 KMRLLQTLIEEEWPD----RAIIFANTKHRCEDI--WGH----LAADGHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q+ + ++ +F G L++LVAT VA GL IP V Y L + V Sbjct 289 ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI 344 Query 470 GR-ARADQSVYAF 481 GR RA S ++ Sbjct 345 GRTGRAGASGHSI 357 >sp|B5QVH2|RHLB_SALEP ATP-dependent RNA helicase RhlB OS=Salmonella enteritidis PT4 (strain P125109) OX=550537 GN=rhlB PE=3 SV=1 Length=421 Score = 38.1 bits (87), Expect = 0.25, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +++ ++ R IIF T+ + W L R LL G Sbjct 243 KMRLLQTLIEEEWPD----RAIIFANTKHRCEDI--WGH----LAADGHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q+ + ++ +F G L++LVAT VA GL IP V Y L + V Sbjct 289 ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI 344 Query 470 GR-ARADQSVYAF 481 GR RA S ++ Sbjct 345 GRTGRAGASGHSI 357 >sp|B5FN74|RHLB_SALDC ATP-dependent RNA helicase RhlB OS=Salmonella dublin (strain CT_02021853) OX=439851 GN=rhlB PE=3 SV=1 Length=421 Score = 38.1 bits (87), Expect = 0.25, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +++ ++ R IIF T+ + W L R LL G Sbjct 243 KMRLLQTLIEEEWPD----RAIIFANTKHRCEDI--WGH----LAADGHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q+ + ++ +F G L++LVAT VA GL IP V Y L + V Sbjct 289 ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI 344 Query 470 GR-ARADQSVYAF 481 GR RA S ++ Sbjct 345 GRTGRAGASGHSI 357 >sp|Q57HT6|RHLB_SALCH ATP-dependent RNA helicase RhlB OS=Salmonella choleraesuis (strain SC-B67) OX=321314 GN=rhlB PE=3 SV=1 Length=421 Score = 38.1 bits (87), Expect = 0.25, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +++ ++ R IIF T+ + W L R LL G Sbjct 243 KMRLLQTLIEEEWPD----RAIIFANTKHRCEDI--WGH----LAADGHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q+ + ++ +F G L++LVAT VA GL IP V Y L + V Sbjct 289 ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI 344 Query 470 GR-ARADQSVYAF 481 GR RA S ++ Sbjct 345 GRTGRAGASGHSI 357 >sp|B5EZ40|RHLB_SALA4 ATP-dependent RNA helicase RhlB OS=Salmonella agona (strain SL483) OX=454166 GN=rhlB PE=3 SV=1 Length=421 Score = 38.1 bits (87), Expect = 0.25, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +++ ++ R IIF T+ + W L R LL G Sbjct 243 KMRLLQTLIEEEWPD----RAIIFANTKHRCEDI--WGH----LAADGHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q+ + ++ +F G L++LVAT VA GL IP V Y L + V Sbjct 289 ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI 344 Query 470 GR-ARADQSVYAF 481 GR RA S ++ Sbjct 345 GRTGRAGASGHSI 357 >sp|A8AX17|UVRB_STRGC UvrABC system protein B OS=Streptococcus gordonii (strain Challis / ATCC 35105 / BCRC 15272 / CH1 / DL1 / V288) OX=467705 GN=uvrB PE=3 SV=1 Length=662 Score = 38.5 bits (88), Expect = 0.25, Method: Compositional matrix adjust. Identities = 24/108 (22%), Positives = 50/108 (46%), Gaps = 7/108 (6%) Query 370 GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD 429 G I R ++ + + L ++ D ++ G + + ++ E+I+ + Sbjct 441 GEINARVEKNERTFITTLTKKMAEDLTDYFKEM--GVKVKYMHSDIKTLERTEIIRDLRL 498 Query 430 GTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 G ++LV ++ EG+D+P ++V + G L NE ++Q GRA Sbjct 499 GVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRA 546 >sp|Q02748|IF4A_DROME Eukaryotic initiation factor 4A OS=Drosophila melanogaster OX=7227 GN=eIF4A PE=1 SV=3 Length=403 Score = 38.1 bits (87), Expect = 0.25, Method: Compositional matrix adjust. Identities = 15/53 (28%), Positives = 33/53 (62%), Gaps = 0/53 (0%) Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN 461 S+ M QRD++ ++++F+ G+ +L+ T + G+D+ ++V+ Y L +N Sbjct 297 SAMHGDMEQRDREVIMKQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSN 349 >sp|B5BIS9|RHLB_SALPK ATP-dependent RNA helicase RhlB OS=Salmonella paratyphi A (strain AKU_12601) OX=554290 GN=rhlB PE=3 SV=1 Length=421 Score = 38.1 bits (87), Expect = 0.26, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +++ ++ R IIF T+ + W L R LL G Sbjct 243 KMRLLQTLIEEEWPD----RAIIFANTKHRCEDI--WGH----LAADGHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q+ + ++ +F G L++LVAT VA GL IP V Y L + V Sbjct 289 ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI 344 Query 470 GR-ARADQSVYAF 481 GR RA S ++ Sbjct 345 GRTGRAGASGHSI 357 >sp|Q4WPE9|PRP28_ASPFU Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293) OX=330879 GN=prp28 PE=3 SV=1 Length=796 Score = 38.5 bits (88), Expect = 0.26, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 56/107 (52%), Gaps = 8/107 (7%) Query 407 GNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 G SS + H TQ ++ + ++G+ ++LVAT +A G+D+P ++VV + + + S Sbjct 658 GFSSVTLHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMANSIES 717 Query 465 MVQARGR-ARADQSVYA--FVATEGSR---ELKRELINEALETLMEQ 505 GR RA +S A F+ E + +LK+ L+ + + E+ Sbjct 718 YTHRIGRTGRAGKSGVAITFLGNEDADVMYDLKQMLMKSPISRVPEE 764 >sp|Q86IZ9|DDX52_DICDI Probable ATP-dependent RNA helicase ddx52 OS=Dictyostelium discoideum OX=44689 GN=ddx52 PE=3 SV=1 Length=668 Score = 38.5 bits (88), Expect = 0.26, Method: Compositional matrix adjust. Identities = 39/159 (25%), Positives = 69/159 (43%), Gaps = 30/159 (19%) Query 319 QILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQ 378 +I+ E+ A+ D+K L G E KL + +++Q+ P +IFT++++ Sbjct 401 KIIIGEQNAAAITVDQK-----LIYVGKEEGKLLAVRQLIQKGLE----PPILIFTQSKE 451 Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHM--TQRDQQEVIQKFQDGTLNLLV 436 AH L Q LI G + H TQ + +++KF+ G + +L+ Sbjct 452 RAHDLF----------------QELIFDGINVDVIHSERTQFQRDTIVKKFRMGKIWVLI 495 Query 437 ATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGRA 472 T + G+D N V+ + L + I + GRA Sbjct 496 CTELMARGMDFKGVNFVINFDFPHTLASYIHRIGRTGRA 534 Score = 34.3 bits (77), Expect = 4.5, Method: Compositional matrix adjust. Identities = 33/135 (24%), Positives = 61/135 (45%), Gaps = 17/135 (13%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-------AAYVAKRHLETVDGAKVVVLVNRVHL 59 Q +VI L+ + ++ PTG+GKT + A Y K+ +G + V++ L Sbjct 226 QMQVIPILLKEREVVAIAPTGSGKTASFSIPILQALYEPKK-----EGFRSVIIAPTREL 280 Query 60 VTQHGEEFRRMLDGR-WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEE 118 Q FR + G+ + + LS ++ ++ +L + +D+LI T + L +E Sbjct 281 AQQIYRNFRLLSKGKPFRICVLSKNLHNQSTNENLIKNYDILITTP----LRLVYLIKEN 336 Query 119 HVELTVFSLIVVDEC 133 + L +V DE Sbjct 337 LLSLNKVEYLVFDEA 351 >sp|Q4IP34|PRP5_GIBZE Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=PRP5 PE=3 SV=3 Length=1191 Score = 38.5 bits (88), Expect = 0.26, Method: Compositional matrix adjust. Identities = 23/75 (31%), Positives = 42/75 (56%), Gaps = 5/75 (7%) Query 384 LLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVA 441 L+++++Q+ + D+ +L++ G S H Q D+ I F+ G + +L+ATSVA Sbjct 815 LIFVERQE--KADDLLKELMM-KGYPCMSIHGGKDQIDRDSTISDFKKGVVPILIATSVA 871 Query 442 EEGLDIPHCNVVVRY 456 GLD+ +V+ Y Sbjct 872 ARGLDVKQLKLVINY 886 >sp|A5GHU1|UVRB_SYNPW UvrABC system protein B OS=Synechococcus sp. (strain WH7803) OX=32051 GN=uvrB PE=3 SV=1 Length=678 Score = 38.5 bits (88), Expect = 0.26, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 19/114 (17%) Query 364 SSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEV 423 +S R ++ T T++ A L +L + + +R + L H +R E+ Sbjct 441 ASKQQRVLVTTLTKRMAEDLTDYLAENE------VRVRYL------HSEIHSIER--IEI 486 Query 424 IQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 IQ + G ++LV ++ EGLD+P ++V + G L E S++Q GRA Sbjct 487 IQDLRLGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRA 540 >sp|A9MJ29|RHLB_SALAR ATP-dependent RNA helicase RhlB OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) OX=41514 GN=rhlB PE=3 SV=1 Length=421 Score = 38.1 bits (87), Expect = 0.26, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +++ ++ R IIF T+ + W L R LL G Sbjct 243 KMRLLQTLIEEEWPD----RAIIFANTKHRCEDI--WGH----LAADGHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q+ + ++ +F G L++LVAT VA GL IP V Y L + V Sbjct 289 ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI 344 Query 470 GR-ARADQSVYAF 481 GR RA S ++ Sbjct 345 GRTGRAGASGHSI 357 >sp|Q9CMB4|RECG_PASMU ATP-dependent DNA helicase RecG OS=Pasteurella multocida (strain Pm70) OX=272843 GN=recG PE=3 SV=1 Length=693 Score = 38.5 bits (88), Expect = 0.26, Method: Compositional matrix adjust. Identities = 14/40 (35%), Positives = 30/40 (75%), Gaps = 0/40 (0%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV 454 M ++Q+++Q F+ ++LLVAT+V E G+D+P+ ++++ Sbjct 527 MKPAEKQDIMQAFKQAEIDLLVATTVIEVGVDVPNASLMI 566 >sp|B1L280|UVRB_CLOBM UvrABC system protein B OS=Clostridium botulinum (strain Loch Maree / Type A3) OX=498214 GN=uvrB PE=3 SV=1 Length=662 Score = 38.5 bits (88), Expect = 0.26, Method: Compositional matrix adjust. Identities = 26/84 (31%), Positives = 44/84 (52%), Gaps = 9/84 (11%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGR-A 472 ++ ++I + G ++LV ++ EGLDIP +V + G L +E S++Q GR A Sbjct 482 ERMKIIHDLRKGEFHVLVGINLLREGLDIPEVALVTILDADKEGFLRSETSLIQTVGRAA 541 Query 473 RADQS---VYAFVATEGSRELKRE 493 R +S +Y V T+ + RE Sbjct 542 RNSESKVIMYGDVITKSMEKTIRE 565 >sp|Q9CI06|UVRB_LACLA UvrABC system protein B OS=Lactococcus lactis subsp. lactis (strain IL1403) OX=272623 GN=uvrB PE=3 SV=1 Length=692 Score = 38.5 bits (88), Expect = 0.26, Method: Compositional matrix adjust. Identities = 18/59 (31%), Positives = 34/59 (58%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+I+ + G ++LV ++ EG+D+P ++V + G L NE ++Q GRA Sbjct 489 ERTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRA 547 >sp|C1CR65|UVRB_STRZT UvrABC system protein B OS=Streptococcus pneumoniae (strain Taiwan19F-14) OX=487213 GN=uvrB PE=3 SV=1 Length=662 Score = 38.1 bits (87), Expect = 0.26, Method: Compositional matrix adjust. Identities = 18/59 (31%), Positives = 34/59 (58%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+I+ + G ++LV ++ EG+D+P ++V + G L NE ++Q GRA Sbjct 488 ERTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRA 546 >sp|Q7UA24|UVRB_PARMW UvrABC system protein B OS=Parasynechococcus marenigrum (strain WH8102) OX=84588 GN=uvrB PE=3 SV=1 Length=677 Score = 38.1 bits (87), Expect = 0.27, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 19/114 (17%) Query 364 SSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEV 423 +S R ++ T T++ A L +L + + +R + L H +R E+ Sbjct 441 ASKQQRVLVTTLTKRMAEDLTDYLAENE------VRVRYL------HSEIHSIER--IEI 486 Query 424 IQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 IQ + G ++LV ++ EGLD+P ++V + G L E S++Q GRA Sbjct 487 IQDLRLGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRA 540 >sp|Q31UK5|RHLB_SHIBS ATP-dependent RNA helicase RhlB OS=Shigella boydii serotype 4 (strain Sb227) OX=300268 GN=rhlB PE=3 SV=1 Length=421 Score = 38.1 bits (87), Expect = 0.27, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +++ ++ R IIF T+ + W L R LL G Sbjct 243 KMRLLQTLIEEEWPD----RAIIFANTKHRCEEI--WGH----LAADGHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q+ + ++ +F G L++LVAT VA GL IP V Y L + V Sbjct 289 ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI 344 Query 470 GR-ARADQSVYAF 481 GR RA S ++ Sbjct 345 GRTGRAGASGHSI 357 >sp|B2TU12|RHLB_SHIB3 ATP-dependent RNA helicase RhlB OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) OX=344609 GN=rhlB PE=3 SV=1 Length=421 Score = 38.1 bits (87), Expect = 0.27, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +++ ++ R IIF T+ + W L R LL G Sbjct 243 KMRLLQTLIEEEWPD----RAIIFANTKHRCEEI--WGH----LAADGHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q+ + ++ +F G L++LVAT VA GL IP V Y L + V Sbjct 289 ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI 344 Query 470 GR-ARADQSVYAF 481 GR RA S ++ Sbjct 345 GRTGRAGASGHSI 357 >sp|Q1E0Z3|DBP8_COCIM ATP-dependent RNA helicase DBP8 OS=Coccidioides immitis (strain RS) OX=246410 GN=DBP8 PE=3 SV=1 Length=536 Score = 38.1 bits (87), Expect = 0.27, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (2%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR 473 + Q ++ + +F+ LLVAT VA GLDIP +VV + + N + GR AR Sbjct 395 LPQSERTSNLARFRASAARLLVATDVAARGLDIPSVGLVVNFDVPRNPDDYIHRVGRTAR 454 Query 474 A 474 A Sbjct 455 A 455 >sp|Q03SM9|UVRB_LEVBA UvrABC system protein B OS=Levilactobacillus brevis (strain ATCC 367 / BCRC 12310 / CIP 105137 / JCM 1170 / LMG 11437 / NCIMB 947 / NCTC 947) OX=387344 GN=uvrB PE=3 SV=1 Length=668 Score = 38.1 bits (87), Expect = 0.27, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+++ + G ++LV ++ EG+DIP ++V + G L NE S++Q GRA Sbjct 488 ERTEIMRDLRLGKYDVLVGINLLREGIDIPEVSLVAILDADKEGFLRNERSLIQTIGRA 546 >sp|Q3YVI4|RHLB_SHISS ATP-dependent RNA helicase RhlB OS=Shigella sonnei (strain Ss046) OX=300269 GN=rhlB PE=3 SV=1 Length=421 Score = 38.1 bits (87), Expect = 0.27, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +++ ++ R IIF T+ + W L R LL G Sbjct 243 KMRLLQTLIEEEWPD----RAIIFANTKHRCEEI--WGH----LAADGHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q+ + ++ +F G L++LVAT VA GL IP V Y L + V Sbjct 289 ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI 344 Query 470 GR-ARADQSVYAF 481 GR RA S ++ Sbjct 345 GRTGRAGASGHSI 357 >sp|P0A8K0|RHLB_SHIFL ATP-dependent RNA helicase RhlB OS=Shigella flexneri OX=623 GN=rhlB PE=3 SV=2 Length=421 Score = 38.1 bits (87), Expect = 0.27, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +++ ++ R IIF T+ + W L R LL G Sbjct 243 KMRLLQTLIEEEWPD----RAIIFANTKHRCEEI--WGH----LAADGHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q+ + ++ +F G L++LVAT VA GL IP V Y L + V Sbjct 289 ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI 344 Query 470 GR-ARADQSVYAF 481 GR RA S ++ Sbjct 345 GRTGRAGASGHSI 357 >sp|Q1R4F9|RHLB_ECOUT ATP-dependent RNA helicase RhlB OS=Escherichia coli (strain UTI89 / UPEC) OX=364106 GN=rhlB PE=3 SV=1 Length=421 Score = 38.1 bits (87), Expect = 0.27, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +++ ++ R IIF T+ + W L R LL G Sbjct 243 KMRLLQTLIEEEWPD----RAIIFANTKHRCEEI--WGH----LAADGHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q+ + ++ +F G L++LVAT VA GL IP V Y L + V Sbjct 289 ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI 344 Query 470 GR-ARADQSVYAF 481 GR RA S ++ Sbjct 345 GRTGRAGASGHSI 357 >sp|B6I4B6|RHLB_ECOSE ATP-dependent RNA helicase RhlB OS=Escherichia coli (strain SE11) OX=409438 GN=rhlB PE=3 SV=1 Length=421 Score = 38.1 bits (87), Expect = 0.27, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +++ ++ R IIF T+ + W L R LL G Sbjct 243 KMRLLQTLIEEEWPD----RAIIFANTKHRCEEI--WGH----LAADGHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q+ + ++ +F G L++LVAT VA GL IP V Y L + V Sbjct 289 ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI 344 Query 470 GR-ARADQSVYAF 481 GR RA S ++ Sbjct 345 GRTGRAGASGHSI 357 >sp|P0A8J8|RHLB_ECOLI ATP-dependent RNA helicase RhlB OS=Escherichia coli (strain K12) OX=83333 GN=rhlB PE=1 SV=2 Length=421 Score = 38.1 bits (87), Expect = 0.27, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +++ ++ R IIF T+ + W L R LL G Sbjct 243 KMRLLQTLIEEEWPD----RAIIFANTKHRCEEI--WGH----LAADGHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q+ + ++ +F G L++LVAT VA GL IP V Y L + V Sbjct 289 ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI 344 Query 470 GR-ARADQSVYAF 481 GR RA S ++ Sbjct 345 GRTGRAGASGHSI 357 >sp|B1IWC0|RHLB_ECOLC ATP-dependent RNA helicase RhlB OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks) OX=481805 GN=rhlB PE=3 SV=1 Length=421 Score = 38.1 bits (87), Expect = 0.27, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +++ ++ R IIF T+ + W L R LL G Sbjct 243 KMRLLQTLIEEEWPD----RAIIFANTKHRCEEI--WGH----LAADGHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q+ + ++ +F G L++LVAT VA GL IP V Y L + V Sbjct 289 ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI 344 Query 470 GR-ARADQSVYAF 481 GR RA S ++ Sbjct 345 GRTGRAGASGHSI 357 >sp|P0A8J9|RHLB_ECOL6 ATP-dependent RNA helicase RhlB OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=rhlB PE=3 SV=2 Length=421 Score = 38.1 bits (87), Expect = 0.27, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +++ ++ R IIF T+ + W L R LL G Sbjct 243 KMRLLQTLIEEEWPD----RAIIFANTKHRCEEI--WGH----LAADGHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q+ + ++ +F G L++LVAT VA GL IP V Y L + V Sbjct 289 ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI 344 Query 470 GR-ARADQSVYAF 481 GR RA S ++ Sbjct 345 GRTGRAGASGHSI 357 >sp|Q0TAU3|RHLB_ECOL5 ATP-dependent RNA helicase RhlB OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) OX=362663 GN=rhlB PE=3 SV=1 Length=421 Score = 38.1 bits (87), Expect = 0.27, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +++ ++ R IIF T+ + W L R LL G Sbjct 243 KMRLLQTLIEEEWPD----RAIIFANTKHRCEEI--WGH----LAADGHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q+ + ++ +F G L++LVAT VA GL IP V Y L + V Sbjct 289 ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI 344 Query 470 GR-ARADQSVYAF 481 GR RA S ++ Sbjct 345 GRTGRAGASGHSI 357 >sp|A1AHV0|RHLB_ECOK1 ATP-dependent RNA helicase RhlB OS=Escherichia coli O1:K1 / APEC OX=405955 GN=rhlB PE=3 SV=1 Length=421 Score = 38.1 bits (87), Expect = 0.27, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +++ ++ R IIF T+ + W L R LL G Sbjct 243 KMRLLQTLIEEEWPD----RAIIFANTKHRCEEI--WGH----LAADGHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q+ + ++ +F G L++LVAT VA GL IP V Y L + V Sbjct 289 ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI 344 Query 470 GR-ARADQSVYAF 481 GR RA S ++ Sbjct 345 GRTGRAGASGHSI 357 >sp|A8A6N4|RHLB_ECOHS ATP-dependent RNA helicase RhlB OS=Escherichia coli O9:H4 (strain HS) OX=331112 GN=rhlB PE=3 SV=1 Length=421 Score = 38.1 bits (87), Expect = 0.27, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +++ ++ R IIF T+ + W L R LL G Sbjct 243 KMRLLQTLIEEEWPD----RAIIFANTKHRCEEI--WGH----LAADGHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q+ + ++ +F G L++LVAT VA GL IP V Y L + V Sbjct 289 ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI 344 Query 470 GR-ARADQSVYAF 481 GR RA S ++ Sbjct 345 GRTGRAGASGHSI 357 >sp|B1X9Z4|RHLB_ECODH ATP-dependent RNA helicase RhlB OS=Escherichia coli (strain K12 / DH10B) OX=316385 GN=rhlB PE=3 SV=1 Length=421 Score = 38.1 bits (87), Expect = 0.27, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +++ ++ R IIF T+ + W L R LL G Sbjct 243 KMRLLQTLIEEEWPD----RAIIFANTKHRCEEI--WGH----LAADGHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q+ + ++ +F G L++LVAT VA GL IP V Y L + V Sbjct 289 ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI 344 Query 470 GR-ARADQSVYAF 481 GR RA S ++ Sbjct 345 GRTGRAGASGHSI 357 >sp|C4ZZ48|RHLB_ECOBW ATP-dependent RNA helicase RhlB OS=Escherichia coli (strain K12 / MC4100 / BW2952) OX=595496 GN=rhlB PE=3 SV=1 Length=421 Score = 38.1 bits (87), Expect = 0.27, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +++ ++ R IIF T+ + W L R LL G Sbjct 243 KMRLLQTLIEEEWPD----RAIIFANTKHRCEEI--WGH----LAADGHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q+ + ++ +F G L++LVAT VA GL IP V Y L + V Sbjct 289 ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI 344 Query 470 GR-ARADQSVYAF 481 GR RA S ++ Sbjct 345 GRTGRAGASGHSI 357 >sp|B7M5C7|RHLB_ECO8A ATP-dependent RNA helicase RhlB OS=Escherichia coli O8 (strain IAI1) OX=585034 GN=rhlB PE=3 SV=1 Length=421 Score = 38.1 bits (87), Expect = 0.27, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +++ ++ R IIF T+ + W L R LL G Sbjct 243 KMRLLQTLIEEEWPD----RAIIFANTKHRCEEI--WGH----LAADGHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q+ + ++ +F G L++LVAT VA GL IP V Y L + V Sbjct 289 ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI 344 Query 470 GR-ARADQSVYAF 481 GR RA S ++ Sbjct 345 GRTGRAGASGHSI 357 >sp|B7MR01|RHLB_ECO81 ATP-dependent RNA helicase RhlB OS=Escherichia coli O81 (strain ED1a) OX=585397 GN=rhlB PE=3 SV=1 Length=421 Score = 38.1 bits (87), Expect = 0.27, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +++ ++ R IIF T+ + W L R LL G Sbjct 243 KMRLLQTLIEEEWPD----RAIIFANTKHRCEEI--WGH----LAADGHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q+ + ++ +F G L++LVAT VA GL IP V Y L + V Sbjct 289 ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI 344 Query 470 GR-ARADQSVYAF 481 GR RA S ++ Sbjct 345 GRTGRAGASGHSI 357 >sp|B7L8B6|RHLB_ECO55 ATP-dependent RNA helicase RhlB OS=Escherichia coli (strain 55989 / EAEC) OX=585055 GN=rhlB PE=3 SV=1 Length=421 Score = 38.1 bits (87), Expect = 0.27, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +++ ++ R IIF T+ + W L R LL G Sbjct 243 KMRLLQTLIEEEWPD----RAIIFANTKHRCEEI--WGH----LAADGHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q+ + ++ +F G L++LVAT VA GL IP V Y L + V Sbjct 289 ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI 344 Query 470 GR-ARADQSVYAF 481 GR RA S ++ Sbjct 345 GRTGRAGASGHSI 357 >sp|B7MGJ1|RHLB_ECO45 ATP-dependent RNA helicase RhlB OS=Escherichia coli O45:K1 (strain S88 / ExPEC) OX=585035 GN=rhlB PE=3 SV=1 Length=421 Score = 38.1 bits (87), Expect = 0.27, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +++ ++ R IIF T+ + W L R LL G Sbjct 243 KMRLLQTLIEEEWPD----RAIIFANTKHRCEEI--WGH----LAADGHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q+ + ++ +F G L++LVAT VA GL IP V Y L + V Sbjct 289 ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI 344 Query 470 GR-ARADQSVYAF 481 GR RA S ++ Sbjct 345 GRTGRAGASGHSI 357 >sp|B7UMN5|RHLB_ECO27 ATP-dependent RNA helicase RhlB OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) OX=574521 GN=rhlB PE=3 SV=1 Length=421 Score = 38.1 bits (87), Expect = 0.27, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +++ ++ R IIF T+ + W L R LL G Sbjct 243 KMRLLQTLIEEEWPD----RAIIFANTKHRCEEI--WGH----LAADGHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q+ + ++ +F G L++LVAT VA GL IP V Y L + V Sbjct 289 ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI 344 Query 470 GR-ARADQSVYAF 481 GR RA S ++ Sbjct 345 GRTGRAGASGHSI 357 >sp|A7ZTY2|RHLB_ECO24 ATP-dependent RNA helicase RhlB OS=Escherichia coli O139:H28 (strain E24377A / ETEC) OX=331111 GN=rhlB PE=3 SV=1 Length=421 Score = 38.1 bits (87), Expect = 0.27, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +++ ++ R IIF T+ + W L R LL G Sbjct 243 KMRLLQTLIEEEWPD----RAIIFANTKHRCEEI--WGH----LAADGHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q+ + ++ +F G L++LVAT VA GL IP V Y L + V Sbjct 289 ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI 344 Query 470 GR-ARADQSVYAF 481 GR RA S ++ Sbjct 345 GRTGRAGASGHSI 357 >sp|Q5NFN4|UVRB_FRATT UvrABC system protein B OS=Francisella tularensis subsp. tularensis (strain SCHU S4 / Schu 4) OX=177416 GN=uvrB PE=3 SV=1 Length=668 Score = 38.1 bits (87), Expect = 0.27, Method: Compositional matrix adjust. Identities = 22/74 (30%), Positives = 40/74 (54%), Gaps = 9/74 (12%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY-----GLLTNEISMVQARGRARADQ 476 ++I + G ++LV ++ EGLD+P V++ + G L +E S++Q GR +Q Sbjct 485 QIIHDLRHGVFDVLVGINLLREGLDMPEVGVLLIFDADKEGFLRSEKSLIQTIGRVARNQ 544 Query 477 S----VYAFVATEG 486 + +YA V T+ Sbjct 545 NGRAILYADVVTKS 558 >sp|Q9Y7C4|ROK1_CANAL ATP-dependent RNA helicase CHR1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=CHR1 PE=3 SV=2 Length=578 Score = 38.1 bits (87), Expect = 0.28, Method: Compositional matrix adjust. Identities = 32/140 (23%), Positives = 63/140 (45%), Gaps = 13/140 (9%) Query 416 TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR---- 471 T + ++EVI++F++G + +L+ T V G+D N+V+ Y + + + V GR Sbjct 413 TPKQREEVIKRFKNGDIWVLITTDVLARGVDFKGVNLVINYDVPQSAQAYVHRIGRTGRG 472 Query 472 ARADQSVYAFVATEGS------RELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDL 525 +A ++V F + +K+ N+ ME +K + Q K ++ Sbjct 473 GKAGKAVTFFTKEDDKAIKPILNVMKQSGCNDGYSQWMEDMGKLSKK---EKKQIKTHEI 529 Query 526 QQAALTKRAAQAAQRENQRQ 545 Q+ ++ Q+ QRQ Sbjct 530 QRKKISTVPKVIKQKRKQRQ 549 >sp|Q10202|DBP3_SCHPO ATP-dependent RNA helicase dbp3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=dbp3 PE=3 SV=1 Length=578 Score = 38.1 bits (87), Expect = 0.28, Method: Compositional matrix adjust. Identities = 44/194 (23%), Positives = 80/194 (41%), Gaps = 29/194 (15%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA-GN 408 K ML+ +L++ SS I+ +L+ ++ ++ R ++G G+ Sbjct 399 KERMLDNLLRKHLSSGGKDDKILI---------FVLYKKEAARVEGTLARKYNVVGIHGD 449 Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISM 465 SQ + + + F+ G +LVAT VA GLDIP +V+ + + + Sbjct 450 MSQGARL------QALNDFKSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYVHR 503 Query 466 VQARGRARADQSVYAFVATEGSRELKRELIN-------EALETLMEQAVAAVQKMDQAEY 518 + GRA + F T + EL+N + E L + A K++ Y Sbjct 504 IGRTGRANTKGTAITFF-TPQDKSHAGELVNVLRQAKQDIPEGLFKFGTAVKPKLNA--Y 560 Query 519 QAKIRDLQQAALTK 532 +++ D+ A TK Sbjct 561 GSRVVDVPVKAATK 574 >sp|B7LU75|RHLB_ESCF3 ATP-dependent RNA helicase RhlB OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 / IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 / CDC 0568-73) OX=585054 GN=rhlB PE=3 SV=1 Length=421 Score = 38.1 bits (87), Expect = 0.28, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +++ ++ R IIF T+ + W L R LL G Sbjct 243 KMRLLQTLIEEEWPD----RAIIFANTKHRCEEI--WGH----LAADGHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q+ + ++ +F G L++LVAT VA GL IP V Y L + V Sbjct 289 ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI 344 Query 470 GR-ARADQSVYAF 481 GR RA S ++ Sbjct 345 GRTGRAGASGHSI 357 >sp|Q054D2|UVRB_LEPBL UvrABC system protein B OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) OX=355276 GN=uvrB PE=3 SV=1 Length=666 Score = 38.1 bits (87), Expect = 0.28, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 33/59 (56%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 D+ +I+ + G ++L+ ++ EGLDIP ++V + G L N S++Q GRA Sbjct 482 DRVAIIRDLRKGIYDVLIGINLLREGLDIPEVSLVAILDADKEGFLRNYKSLIQTVGRA 540 >sp|Q04QJ9|UVRB_LEPBJ UvrABC system protein B OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) OX=355277 GN=uvrB PE=3 SV=1 Length=666 Score = 38.1 bits (87), Expect = 0.28, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 33/59 (56%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 D+ +I+ + G ++L+ ++ EGLDIP ++V + G L N S++Q GRA Sbjct 482 DRVAIIRDLRKGIYDVLIGINLLREGLDIPEVSLVAILDADKEGFLRNYKSLIQTVGRA 540 >sp|Q8H0U8|RH42_ARATH DEAD-box ATP-dependent RNA helicase 42 OS=Arabidopsis thaliana OX=3702 GN=RH42 PE=1 SV=2 Length=1166 Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust. Identities = 17/40 (43%), Positives = 25/40 (63%), Gaps = 0/40 (0%) Query 417 QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY 456 Q D++ I F++ NLL+ATSVA GLD+ +VV + Sbjct 812 QTDRESTISDFKNDVCNLLIATSVAARGLDVKELELVVNF 851 >sp|Q9NXZ2|DDX43_HUMAN Probable ATP-dependent RNA helicase DDX43 OS=Homo sapiens OX=9606 GN=DDX43 PE=1 SV=2 Length=648 Score = 38.1 bits (87), Expect = 0.28, Method: Compositional matrix adjust. Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 5/102 (5%) Query 417 QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARAD 475 QRD+++ ++ F+ G + +L+AT +A GLD+ V + N V GR RA Sbjct 523 QRDREKALENFKTGKVRILIATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAG 582 Query 476 QSVYAFVA-TEGSRELKRELIN---EALETLMEQAVAAVQKM 513 ++ + T + ELIN A +++ E+ V+ ++ Sbjct 583 RTGVSITTLTRNDWRVASELINILERANQSIPEELVSMAERF 624 >sp|B7NF85|RHLB_ECOLU ATP-dependent RNA helicase RhlB OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) OX=585056 GN=rhlB PE=3 SV=1 Length=421 Score = 38.1 bits (87), Expect = 0.28, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +++ ++ R IIF T+ + W L R LL G Sbjct 243 KMRLLQTLIEEEWPD----RAIIFANTKHRCEEI--WGH----LAADGHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q+ + ++ +F G L++LVAT VA GL IP V Y L + V Sbjct 289 ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI 344 Query 470 GR-ARADQSVYAF 481 GR RA S ++ Sbjct 345 GRTGRAGASGHSI 357 >sp|B7NTG2|RHLB_ECO7I ATP-dependent RNA helicase RhlB OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) OX=585057 GN=rhlB PE=3 SV=1 Length=421 Score = 38.1 bits (87), Expect = 0.28, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +++ ++ R IIF T+ + W L R LL G Sbjct 243 KMRLLQTLIEEEWPD----RAIIFANTKHRCEEI--WGH----LAADGHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q+ + ++ +F G L++LVAT VA GL IP V Y L + V Sbjct 289 ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI 344 Query 470 GR-ARADQSVYAF 481 GR RA S ++ Sbjct 345 GRTGRAGASGHSI 357 >sp|Q9VHS8|IF4A3_DROME Eukaryotic initiation factor 4A-III OS=Drosophila melanogaster OX=7227 GN=CG7483 PE=1 SV=1 Length=399 Score = 38.1 bits (87), Expect = 0.28, Method: Compositional matrix adjust. Identities = 18/64 (28%), Positives = 35/64 (55%), Gaps = 0/64 (0%) Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 SS M Q+++ E++++F+ G +L+ T V G+D+ ++V+ Y L N + Sbjct 293 SSMHGDMPQKERDEIMKEFRAGQSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHR 352 Query 469 RGRA 472 GR+ Sbjct 353 IGRS 356 >sp|Q88YI8|UVRB_LACPL UvrABC system protein B OS=Lactiplantibacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1) OX=220668 GN=uvrB PE=3 SV=1 Length=667 Score = 38.1 bits (87), Expect = 0.28, Method: Compositional matrix adjust. Identities = 18/59 (31%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ ++I+ + G ++LV ++ EG+D+P ++V + G L NE S++Q GRA Sbjct 488 ERTQIIRDLRLGKFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERSLIQTIGRA 546 >sp|Q0SYX0|RHLB_SHIF8 ATP-dependent RNA helicase RhlB OS=Shigella flexneri serotype 5b (strain 8401) OX=373384 GN=rhlB PE=3 SV=1 Length=421 Score = 38.1 bits (87), Expect = 0.28, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +++ ++ R IIF T+ + W L R LL G Sbjct 243 KMRLLQTLIEEEWPD----RAIIFANTKHRCEEI--WGH----LAADGHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q+ + ++ +F G L++LVAT VA GL IP V Y L + V Sbjct 289 ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI 344 Query 470 GR-ARADQSVYAF 481 GR RA S ++ Sbjct 345 GRTGRAGASGHSI 357 >sp|A7MQI2|RHLB_CROS8 ATP-dependent RNA helicase RhlB OS=Cronobacter sakazakii (strain ATCC BAA-894) OX=290339 GN=rhlB PE=3 SV=1 Length=421 Score = 38.1 bits (87), Expect = 0.28, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +++ ++ R IIF T+ + W L R LL G Sbjct 243 KMRLLQTLIEEEWPD----RAIIFANTKHRCEDI--WGH----LAADGHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q+ + ++ +F G L++LVAT VA GL IP V Y L + V Sbjct 289 ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI 344 Query 470 GR-ARADQSVYAF 481 GR RA S ++ Sbjct 345 GRTGRAGASGHSI 357 >sp|B7LJY3|UVRB_ESCF3 UvrABC system protein B OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 / IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 / CDC 0568-73) OX=585054 GN=uvrB PE=3 SV=1 Length=673 Score = 38.1 bits (87), Expect = 0.28, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 >sp|Q32I48|UVRB_SHIDS UvrABC system protein B OS=Shigella dysenteriae serotype 1 (strain Sd197) OX=300267 GN=uvrB PE=3 SV=1 Length=673 Score = 38.1 bits (87), Expect = 0.28, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 >sp|Q8FJP8|UVRB_ECOL6 UvrABC system protein B OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=uvrB PE=3 SV=3 Length=673 Score = 38.1 bits (87), Expect = 0.28, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 >sp|Q0TJR9|UVRB_ECOL5 UvrABC system protein B OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) OX=362663 GN=uvrB PE=3 SV=1 Length=673 Score = 38.1 bits (87), Expect = 0.28, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 >sp|B7MQN2|UVRB_ECO81 UvrABC system protein B OS=Escherichia coli O81 (strain ED1a) OX=585397 GN=uvrB PE=3 SV=1 Length=673 Score = 38.1 bits (87), Expect = 0.28, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 >sp|B7NNK9|UVRB_ECO7I UvrABC system protein B OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) OX=585057 GN=uvrB PE=3 SV=1 Length=673 Score = 38.1 bits (87), Expect = 0.28, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 >sp|A3PFD7|UVRB_PROM0 UvrABC system protein B OS=Prochlorococcus marinus (strain MIT 9301) OX=167546 GN=uvrB PE=3 SV=1 Length=679 Score = 38.1 bits (87), Expect = 0.29, Method: Compositional matrix adjust. Identities = 25/79 (32%), Positives = 41/79 (52%), Gaps = 6/79 (8%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGR-ARAD 475 E+IQ + G ++LV ++ EGLD+P ++V + G L E S++Q GR AR Sbjct 485 EIIQDLRMGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAARHV 544 Query 476 QSVYAFVATEGSRELKREL 494 + V A + +KR + Sbjct 545 EGVALLYADNFTDSMKRAI 563 >sp|Q3Z405|UVRB_SHISS UvrABC system protein B OS=Shigella sonnei (strain Ss046) OX=300269 GN=uvrB PE=3 SV=1 Length=673 Score = 38.1 bits (87), Expect = 0.29, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 >sp|Q324B3|UVRB_SHIBS UvrABC system protein B OS=Shigella boydii serotype 4 (strain Sb227) OX=300268 GN=uvrB PE=3 SV=1 Length=673 Score = 38.1 bits (87), Expect = 0.29, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 >sp|B2TVF1|UVRB_SHIB3 UvrABC system protein B OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) OX=344609 GN=uvrB PE=3 SV=1 Length=673 Score = 38.1 bits (87), Expect = 0.29, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 >sp|B4TC52|UVRB_SALHS UvrABC system protein B OS=Salmonella heidelberg (strain SL476) OX=454169 GN=uvrB PE=3 SV=1 Length=673 Score = 38.1 bits (87), Expect = 0.29, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 >sp|B5XYX2|UVRB_KLEP3 UvrABC system protein B OS=Klebsiella pneumoniae (strain 342) OX=507522 GN=uvrB PE=3 SV=1 Length=673 Score = 38.1 bits (87), Expect = 0.29, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 >sp|Q1REF1|UVRB_ECOUT UvrABC system protein B OS=Escherichia coli (strain UTI89 / UPEC) OX=364106 GN=uvrB PE=3 SV=1 Length=673 Score = 38.1 bits (87), Expect = 0.29, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 >sp|B1LM70|UVRB_ECOSM UvrABC system protein B OS=Escherichia coli (strain SMS-3-5 / SECEC) OX=439855 GN=uvrB PE=3 SV=1 Length=673 Score = 38.1 bits (87), Expect = 0.29, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 >sp|B6I7T4|UVRB_ECOSE UvrABC system protein B OS=Escherichia coli (strain SE11) OX=409438 GN=uvrB PE=3 SV=1 Length=673 Score = 38.1 bits (87), Expect = 0.29, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 >sp|B7NA78|UVRB_ECOLU UvrABC system protein B OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) OX=585056 GN=uvrB PE=3 SV=1 Length=673 Score = 38.1 bits (87), Expect = 0.29, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 >sp|P0A8F8|UVRB_ECOLI UvrABC system protein B OS=Escherichia coli (strain K12) OX=83333 GN=uvrB PE=1 SV=2 Length=673 Score = 38.1 bits (87), Expect = 0.29, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 >sp|B1IXI9|UVRB_ECOLC UvrABC system protein B OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks) OX=481805 GN=uvrB PE=3 SV=1 Length=673 Score = 38.1 bits (87), Expect = 0.29, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 >sp|A1A921|UVRB_ECOK1 UvrABC system protein B OS=Escherichia coli O1:K1 / APEC OX=405955 GN=uvrB PE=3 SV=1 Length=673 Score = 38.1 bits (87), Expect = 0.29, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 >sp|A7ZY35|UVRB_ECOHS UvrABC system protein B OS=Escherichia coli O9:H4 (strain HS) OX=331112 GN=uvrB PE=3 SV=1 Length=673 Score = 38.1 bits (87), Expect = 0.29, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 >sp|B1X7A9|UVRB_ECODH UvrABC system protein B OS=Escherichia coli (strain K12 / DH10B) OX=316385 GN=uvrB PE=3 SV=1 Length=673 Score = 38.1 bits (87), Expect = 0.29, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 >sp|C4ZXV1|UVRB_ECOBW UvrABC system protein B OS=Escherichia coli (strain K12 / MC4100 / BW2952) OX=595496 GN=uvrB PE=3 SV=1 Length=673 Score = 38.1 bits (87), Expect = 0.29, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 >sp|B7M751|UVRB_ECO8A UvrABC system protein B OS=Escherichia coli O8 (strain IAI1) OX=585034 GN=uvrB PE=3 SV=1 Length=673 Score = 38.1 bits (87), Expect = 0.29, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 >sp|B5YRL8|UVRB_ECO5E UvrABC system protein B OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) OX=444450 GN=uvrB PE=3 SV=1 Length=673 Score = 38.1 bits (87), Expect = 0.29, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 >sp|P0A8F9|UVRB_ECO57 UvrABC system protein B OS=Escherichia coli O157:H7 OX=83334 GN=uvrB PE=3 SV=2 Length=673 Score = 38.1 bits (87), Expect = 0.29, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 >sp|B7LC61|UVRB_ECO55 UvrABC system protein B OS=Escherichia coli (strain 55989 / EAEC) OX=585055 GN=uvrB PE=3 SV=1 Length=673 Score = 38.1 bits (87), Expect = 0.29, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 >sp|B7MGN7|UVRB_ECO45 UvrABC system protein B OS=Escherichia coli O45:K1 (strain S88 / ExPEC) OX=585035 GN=uvrB PE=3 SV=1 Length=673 Score = 38.1 bits (87), Expect = 0.29, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 >sp|B7ULX6|UVRB_ECO27 UvrABC system protein B OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) OX=574521 GN=uvrB PE=3 SV=1 Length=673 Score = 38.1 bits (87), Expect = 0.29, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 >sp|A7ZJI8|UVRB_ECO24 UvrABC system protein B OS=Escherichia coli O139:H28 (strain E24377A / ETEC) OX=331111 GN=uvrB PE=3 SV=1 Length=673 Score = 38.1 bits (87), Expect = 0.29, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 >sp|B7GSZ2|UVRB_BIFLS UvrABC system protein B OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12) OX=391904 GN=uvrB PE=3 SV=1 Length=703 Score = 38.1 bits (87), Expect = 0.29, Method: Compositional matrix adjust. Identities = 21/82 (26%), Positives = 45/82 (55%), Gaps = 5/82 (6%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRARADQ 476 E+++ ++G ++++V ++ EGLD+P ++V + G L + S++Q GRA + Sbjct 492 ELLRMLREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTIGRAARNV 551 Query 477 SVYAFVATEGSRELKRELINEA 498 S + + + E R+ I+E Sbjct 552 SGVVIMYADETTEAMRQAIDET 573 >sp|Q8Z889|UVRB_SALTI UvrABC system protein B OS=Salmonella typhi OX=90370 GN=uvrB PE=3 SV=1 Length=673 Score = 38.1 bits (87), Expect = 0.29, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 >sp|A6T6L9|UVRB_KLEP7 UvrABC system protein B OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) OX=272620 GN=uvrB PE=3 SV=1 Length=673 Score = 38.1 bits (87), Expect = 0.29, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 >sp|A1R6F3|UVRB_PAEAT UvrABC system protein B OS=Paenarthrobacter aurescens (strain TC1) OX=290340 GN=uvrB PE=3 SV=1 Length=699 Score = 38.1 bits (87), Expect = 0.29, Method: Compositional matrix adjust. Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 11/110 (10%) Query 370 GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKF 427 G I TRT ++ L+ L ++ D L+G G + H + + E++++ Sbjct 444 GEIRTRTEKNERVLVTTLTKRMAEDLTD----YLVGHGVKVEYLHSDVDTLRRVELLREL 499 Query 428 QDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 + G ++LV ++ EGLD+P ++V + G L + S++Q GRA Sbjct 500 RMGVFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSSTSLIQTIGRA 549 >sp|Q8XAT4|RHLB_ECO57 ATP-dependent RNA helicase RhlB OS=Escherichia coli O157:H7 OX=83334 GN=rhlB PE=3 SV=3 Length=421 Score = 38.1 bits (87), Expect = 0.29, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 52/122 (43%), Gaps = 18/122 (15%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +++ ++ R IIF T+ + W L R LL G Sbjct 243 KMRLLQTLIEEEWPD----RAIIFANTKHRCEEI--WGH----LAADGHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q+ + ++ +F G L++LVAT VA GL IP V Y L + V Sbjct 289 ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI 344 Query 470 GR 471 GR Sbjct 345 GR 346 >sp|Q9LU46|RH35_ARATH DEAD-box ATP-dependent RNA helicase 35 OS=Arabidopsis thaliana OX=3702 GN=RH35 PE=2 SV=1 Length=591 Score = 38.1 bits (87), Expect = 0.29, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 3/58 (5%) Query 417 QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGR 471 Q D++ I F+ G ++LVAT VA +GLD P V+ Y + + N + + GR Sbjct 433 QEDREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGR 490 >sp|Q8ZQQ4|UVRB_SALTY UvrABC system protein B OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=uvrB PE=3 SV=1 Length=673 Score = 38.1 bits (87), Expect = 0.29, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 >sp|B4TQU3|UVRB_SALSV UvrABC system protein B OS=Salmonella schwarzengrund (strain CVM19633) OX=439843 GN=uvrB PE=3 SV=1 Length=673 Score = 38.1 bits (87), Expect = 0.29, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 >sp|C0PWY7|UVRB_SALPC UvrABC system protein B OS=Salmonella paratyphi C (strain RKS4594) OX=476213 GN=uvrB PE=3 SV=1 Length=673 Score = 38.1 bits (87), Expect = 0.29, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 >sp|A9MTI2|UVRB_SALPB UvrABC system protein B OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) OX=1016998 GN=uvrB PE=3 SV=1 Length=673 Score = 38.1 bits (87), Expect = 0.29, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 >sp|B4SZK1|UVRB_SALNS UvrABC system protein B OS=Salmonella newport (strain SL254) OX=423368 GN=uvrB PE=3 SV=1 Length=673 Score = 38.1 bits (87), Expect = 0.29, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 >sp|B5R765|UVRB_SALG2 UvrABC system protein B OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) OX=550538 GN=uvrB PE=3 SV=1 Length=673 Score = 38.1 bits (87), Expect = 0.29, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 >sp|B5QX69|UVRB_SALEP UvrABC system protein B OS=Salmonella enteritidis PT4 (strain P125109) OX=550537 GN=uvrB PE=3 SV=1 Length=673 Score = 38.1 bits (87), Expect = 0.29, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 >sp|B5FP65|UVRB_SALDC UvrABC system protein B OS=Salmonella dublin (strain CT_02021853) OX=439851 GN=uvrB PE=3 SV=1 Length=673 Score = 38.1 bits (87), Expect = 0.29, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 >sp|Q57RF9|UVRB_SALCH UvrABC system protein B OS=Salmonella choleraesuis (strain SC-B67) OX=321314 GN=uvrB PE=3 SV=1 Length=673 Score = 38.1 bits (87), Expect = 0.29, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 >sp|B5F076|UVRB_SALA4 UvrABC system protein B OS=Salmonella agona (strain SL483) OX=454166 GN=uvrB PE=3 SV=1 Length=673 Score = 38.1 bits (87), Expect = 0.29, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 >sp|Q10RI7|RH38_ORYSJ DEAD-box ATP-dependent RNA helicase 38 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0158200 PE=3 SV=1 Length=505 Score = 38.1 bits (87), Expect = 0.29, Method: Compositional matrix adjust. Identities = 23/88 (26%), Positives = 42/88 (48%), Gaps = 14/88 (16%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 IIF RT+QS + L D + G+ + Q +++++IQ+F++G Sbjct 354 IIFVRTKQSTKDV------HNALTLEDYVCSSIQGS--------LDQSEREKIIQEFKNG 399 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGL 458 +L++T V G D N+V+ Y + Sbjct 400 YTKVLISTDVLARGFDQAQVNLVINYDM 427 >sp|P57381|MFD_BUCAI Transcription-repair-coupling factor OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) OX=107806 GN=mfd PE=3 SV=1 Length=812 Score = 38.1 bits (87), Expect = 0.29, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 16/89 (18%) Query 400 AQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV----- 454 A + IG G M D ++V+ +F + N+L+ T++ E G+DI N ++ Sbjct 501 ASIKIGHG------QMKNIDLKKVMNEFYNNKFNVLICTTIIESGVDIARANTIIIENSD 554 Query 455 RYGLLTNEISMVQARGR-ARADQSVYAFV 482 +GL + Q RGR R++ YA + Sbjct 555 HFGLS----QLHQLRGRIGRSNNQAYALL 579 >sp|B5BC27|UVRB_SALPK UvrABC system protein B OS=Salmonella paratyphi A (strain AKU_12601) OX=554290 GN=uvrB PE=3 SV=1 Length=673 Score = 38.1 bits (87), Expect = 0.29, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 >sp|Q5PG52|UVRB_SALPA UvrABC system protein B OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) OX=295319 GN=uvrB PE=3 SV=1 Length=673 Score = 38.1 bits (87), Expect = 0.29, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 >sp|A7GIY3|UVRB_CLOBL UvrABC system protein B OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) OX=441772 GN=uvrB PE=3 SV=1 Length=662 Score = 38.1 bits (87), Expect = 0.30, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 33/59 (56%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ ++I + G ++LV ++ EGLDIP +V + G L +E S++Q GRA Sbjct 482 ERMKIIHDLRKGEFHVLVGINLLREGLDIPEVALVTILDADKEGFLRSETSLIQTVGRA 540 >sp|B1IFX3|UVRB_CLOBK UvrABC system protein B OS=Clostridium botulinum (strain Okra / Type B1) OX=498213 GN=uvrB PE=3 SV=1 Length=662 Score = 38.1 bits (87), Expect = 0.30, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 33/59 (56%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ ++I + G ++LV ++ EGLDIP +V + G L +E S++Q GRA Sbjct 482 ERMKIIHDLRKGEFHVLVGINLLREGLDIPEVALVTILDADKEGFLRSETSLIQTVGRA 540 >sp|A7FYY1|UVRB_CLOB1 UvrABC system protein B OS=Clostridium botulinum (strain ATCC 19397 / Type A) OX=441770 GN=uvrB PE=3 SV=1 Length=662 Score = 38.1 bits (87), Expect = 0.30, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 33/59 (56%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ ++I + G ++LV ++ EGLDIP +V + G L +E S++Q GRA Sbjct 482 ERMKIIHDLRKGEFHVLVGINLLREGLDIPEVALVTILDADKEGFLRSETSLIQTVGRA 540 >sp|A4W8C2|UVRB_ENT38 UvrABC system protein B OS=Enterobacter sp. (strain 638) OX=399742 GN=uvrB PE=3 SV=1 Length=673 Score = 38.1 bits (87), Expect = 0.30, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 >sp|A9BD93|UVRB_PROM4 UvrABC system protein B OS=Prochlorococcus marinus (strain MIT 9211) OX=93059 GN=uvrB PE=3 SV=1 Length=679 Score = 38.1 bits (87), Expect = 0.30, Method: Compositional matrix adjust. Identities = 20/56 (36%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+IQ + G ++LV ++ EGLD+P ++VV + G L + S++Q GRA Sbjct 485 EIIQDLRVGEYDVLVGVNLLREGLDLPEVSLVVILDADKEGFLRAKRSLIQTIGRA 540 >sp|B1JQ11|RHLB_YERPY ATP-dependent RNA helicase RhlB OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) OX=502800 GN=rhlB PE=3 SV=1 Length=428 Score = 37.7 bits (86), Expect = 0.30, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 58/133 (44%), Gaps = 19/133 (14%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +++ ++ R IIF T+ + W L R LL G Sbjct 243 KMRLLQTLIEEEWPD----RCIIFANTKHRCEEI--WGH----LAADGHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q+ + +++ F G L++LVAT VA GL IP V Y L + V Sbjct 289 ----DVAQKKRLRILEDFTKGDLDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRI 344 Query 470 GR-ARADQSVYAF 481 GR RA +S ++ Sbjct 345 GRTGRAGESGHSI 357 >sp|Q66G19|RHLB_YERPS ATP-dependent RNA helicase RhlB OS=Yersinia pseudotuberculosis serotype I (strain IP32953) OX=273123 GN=rhlB PE=3 SV=1 Length=428 Score = 37.7 bits (86), Expect = 0.30, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 58/133 (44%), Gaps = 19/133 (14%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +++ ++ R IIF T+ + W L R LL G Sbjct 243 KMRLLQTLIEEEWPD----RCIIFANTKHRCEEI--WGH----LAADGHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q+ + +++ F G L++LVAT VA GL IP V Y L + V Sbjct 289 ----DVAQKKRLRILEDFTKGDLDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRI 344 Query 470 GR-ARADQSVYAF 481 GR RA +S ++ Sbjct 345 GRTGRAGESGHSI 357 >sp|A4TRC8|RHLB_YERPP ATP-dependent RNA helicase RhlB OS=Yersinia pestis (strain Pestoides F) OX=386656 GN=rhlB PE=3 SV=1 Length=428 Score = 37.7 bits (86), Expect = 0.30, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 58/133 (44%), Gaps = 19/133 (14%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +++ ++ R IIF T+ + W L R LL G Sbjct 243 KMRLLQTLIEEEWPD----RCIIFANTKHRCEEI--WGH----LAADGHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q+ + +++ F G L++LVAT VA GL IP V Y L + V Sbjct 289 ----DVAQKKRLRILEDFTKGDLDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRI 344 Query 470 GR-ARADQSVYAF 481 GR RA +S ++ Sbjct 345 GRTGRAGESGHSI 357 >sp|Q1CNK3|RHLB_YERPN ATP-dependent RNA helicase RhlB OS=Yersinia pestis bv. Antiqua (strain Nepal516) OX=377628 GN=rhlB PE=3 SV=1 Length=428 Score = 37.7 bits (86), Expect = 0.30, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 58/133 (44%), Gaps = 19/133 (14%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +++ ++ R IIF T+ + W L R LL G Sbjct 243 KMRLLQTLIEEEWPD----RCIIFANTKHRCEEI--WGH----LAADGHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q+ + +++ F G L++LVAT VA GL IP V Y L + V Sbjct 289 ----DVAQKKRLRILEDFTKGDLDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRI 344 Query 470 GR-ARADQSVYAF 481 GR RA +S ++ Sbjct 345 GRTGRAGESGHSI 357 >sp|Q8ZAD8|RHLB_YERPE ATP-dependent RNA helicase RhlB OS=Yersinia pestis OX=632 GN=rhlB PE=3 SV=1 Length=428 Score = 37.7 bits (86), Expect = 0.30, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 58/133 (44%), Gaps = 19/133 (14%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +++ ++ R IIF T+ + W L R LL G Sbjct 243 KMRLLQTLIEEEWPD----RCIIFANTKHRCEEI--WGH----LAADGHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q+ + +++ F G L++LVAT VA GL IP V Y L + V Sbjct 289 ----DVAQKKRLRILEDFTKGDLDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRI 344 Query 470 GR-ARADQSVYAF 481 GR RA +S ++ Sbjct 345 GRTGRAGESGHSI 357 >sp|B2K046|RHLB_YERPB ATP-dependent RNA helicase RhlB OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) OX=502801 GN=rhlB PE=3 SV=1 Length=428 Score = 37.7 bits (86), Expect = 0.30, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 58/133 (44%), Gaps = 19/133 (14%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +++ ++ R IIF T+ + W L R LL G Sbjct 243 KMRLLQTLIEEEWPD----RCIIFANTKHRCEEI--WGH----LAADGHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q+ + +++ F G L++LVAT VA GL IP V Y L + V Sbjct 289 ----DVAQKKRLRILEDFTKGDLDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRI 344 Query 470 GR-ARADQSVYAF 481 GR RA +S ++ Sbjct 345 GRTGRAGESGHSI 357 >sp|Q1CBQ4|RHLB_YERPA ATP-dependent RNA helicase RhlB OS=Yersinia pestis bv. Antiqua (strain Antiqua) OX=360102 GN=rhlB PE=3 SV=1 Length=428 Score = 37.7 bits (86), Expect = 0.30, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 58/133 (44%), Gaps = 19/133 (14%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +++ ++ R IIF T+ + W L R LL G Sbjct 243 KMRLLQTLIEEEWPD----RCIIFANTKHRCEEI--WGH----LAADGHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q+ + +++ F G L++LVAT VA GL IP V Y L + V Sbjct 289 ----DVAQKKRLRILEDFTKGDLDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRI 344 Query 470 GR-ARADQSVYAF 481 GR RA +S ++ Sbjct 345 GRTGRAGESGHSI 357 >sp|A7FD47|RHLB_YERP3 ATP-dependent RNA helicase RhlB OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) OX=349747 GN=rhlB PE=3 SV=1 Length=428 Score = 37.7 bits (86), Expect = 0.30, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 58/133 (44%), Gaps = 19/133 (14%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +++ ++ R IIF T+ + W L R LL G Sbjct 243 KMRLLQTLIEEEWPD----RCIIFANTKHRCEEI--WGH----LAADGHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q+ + +++ F G L++LVAT VA GL IP V Y L + V Sbjct 289 ----DVAQKKRLRILEDFTKGDLDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRI 344 Query 470 GR-ARADQSVYAF 481 GR RA +S ++ Sbjct 345 GRTGRAGESGHSI 357 >sp|C1FMK5|UVRB_CLOBJ UvrABC system protein B OS=Clostridium botulinum (strain Kyoto / Type A2) OX=536232 GN=uvrB PE=3 SV=1 Length=662 Score = 38.1 bits (87), Expect = 0.30, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 33/59 (56%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ ++I + G ++LV ++ EGLDIP +V + G L +E S++Q GRA Sbjct 482 ERMKIIHDLRKGEFHVLVGINLLREGLDIPEVALVTILDADKEGFLRSETSLIQTVGRA 540 >sp|C3KV20|UVRB_CLOB6 UvrABC system protein B OS=Clostridium botulinum (strain 657 / Type Ba4) OX=515621 GN=uvrB PE=3 SV=1 Length=662 Score = 38.1 bits (87), Expect = 0.30, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 33/59 (56%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ ++I + G ++LV ++ EGLDIP +V + G L +E S++Q GRA Sbjct 482 ERMKIIHDLRKGEFHVLVGINLLREGLDIPEVALVTILDADKEGFLRSETSLIQTVGRA 540 >sp|Q837R9|UVRB_ENTFA UvrABC system protein B OS=Enterococcus faecalis (strain ATCC 700802 / V583) OX=226185 GN=uvrB PE=3 SV=1 Length=665 Score = 38.1 bits (87), Expect = 0.30, Method: Compositional matrix adjust. Identities = 17/59 (29%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+I+ + G ++L+ ++ EG+D+P +++ + G L +E S+VQ GRA Sbjct 488 ERTEIIRDLRLGEFDILIGINLLREGIDVPEVSLIAILDADKEGFLRSERSLVQTMGRA 546 >sp|P27639|IF4A_CAEEL Eukaryotic initiation factor 4A OS=Caenorhabditis elegans OX=6239 GN=inf-1 PE=2 SV=1 Length=402 Score = 37.7 bits (86), Expect = 0.31, Method: Compositional matrix adjust. Identities = 30/133 (23%), Positives = 61/133 (46%), Gaps = 17/133 (13%) Query 362 FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ 421 ++ N + +IF TR+ +L + + Q L G M Q ++ Sbjct 263 YNVVNVTQAVIFCNTRRKVDTLTEKMTENQ------FTVSCLHG--------DMDQAERD 308 Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA-RADQSVYA 480 ++++F+ G+ +L+ T + G+D+ ++V+ Y L +N + + GR+ R + A Sbjct 309 TIMREFRSGSSRVLITTDILARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVA 368 Query 481 --FVATEGSRELK 491 FV +R+LK Sbjct 369 INFVTENDARQLK 381 >sp|A9MJE1|UVRB_SALAR UvrABC system protein B OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) OX=41514 GN=uvrB PE=3 SV=1 Length=673 Score = 38.1 bits (87), Expect = 0.31, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 >sp|O51528|RECG_BORBU ATP-dependent DNA helicase RecG OS=Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31) OX=224326 GN=recG PE=3 SV=1 Length=686 Score = 38.1 bits (87), Expect = 0.31, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 40/69 (58%), Gaps = 10/69 (14%) Query 420 QQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGR-AR 473 ++E+++ F +++LVATSV E G+D P+ +V R+GL T + Q RGR R Sbjct 521 KEEIMKNFYSKKVDILVATSVIEVGIDCPNATCMVVEHAERFGLST----LHQIRGRVGR 576 Query 474 ADQSVYAFV 482 ++ + F+ Sbjct 577 SNLQSFFFL 585 >sp|Q088J2|RHLB_SHEFN ATP-dependent RNA helicase RhlB OS=Shewanella frigidimarina (strain NCIMB 400) OX=318167 GN=rhlB PE=3 SV=1 Length=434 Score = 37.7 bits (86), Expect = 0.31, Method: Compositional matrix adjust. Identities = 48/178 (27%), Positives = 73/178 (41%), Gaps = 38/178 (21%) Query 323 AERRLLALFDD----RKNELAHLATHGPENPKLEMLEK----ILQRQFSSSNSPR----- 369 A+ RL LF + ELA+ + PE ++E LEK I + F S + Sbjct 189 AKSRLNMLFSATLSMKVQELAYDHMNDPEKVEIEPLEKTSKNIKEEIFYPSMEDKMRLLL 248 Query 370 ----------GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRD 419 I+F+ T+ S L +L+ R LL G + Q+ Sbjct 249 SLIEEDWPDKAIVFSNTKHSCEKLWSYLEGDGH------RVGLLTG--------DVPQKK 294 Query 420 QQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQ 476 + ++++F G +++LVAT VA GL I + V Y L + V GR RA Q Sbjct 295 RIRILEQFTSGEIDVLVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGQ 352 >sp|A6SFW7|DBP2_BOTFB ATP-dependent RNA helicase dbp2 OS=Botryotinia fuckeliana (strain B05.10) OX=332648 GN=dbp2 PE=3 SV=3 Length=574 Score = 38.1 bits (87), Expect = 0.32, Method: Compositional matrix adjust. Identities = 40/145 (28%), Positives = 70/145 (48%), Gaps = 21/145 (14%) Query 354 LEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQST 413 LEKI++ + + + +IFT T++ A + +L+Q G + I G+ Q+ Sbjct 390 LEKIMEDKDN-----KILIFTGTKRVADDITRFLRQD-GWPALSIH-------GDKQQN- 435 Query 414 HMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-A 472 +RD V+ +F+ G ++VAT VA G+D+ + V Y N + GR Sbjct 436 ---ERDW--VLNEFKTGKSPIMVATDVASRGIDVRNITHVFNYDYPNNSEDYIHRIGRTG 490 Query 473 RADQSVYAF-VATEGSRELKRELIN 496 RA Q A + T +++ R+L+N Sbjct 491 RAGQKGTAITLFTTDNQKQARDLVN 515 >sp|Q5RC67|DDX23_PONAB Probable ATP-dependent RNA helicase DDX23 OS=Pongo abelii OX=9601 GN=DDX23 PE=2 SV=1 Length=820 Score = 38.1 bits (87), Expect = 0.32, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 56/110 (51%), Gaps = 8/110 (7%) Query 383 LLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE--VIQKFQDGTLNLLVATSV 440 +++++ Q++G D+ A+ L G ++ + H + +Q + + G ++LVAT V Sbjct 667 IIIFVNQKKG---CDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDV 723 Query 441 AEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYA--FVATEGS 487 A G+DI ++VV Y + N + GR RA +S A F+ E S Sbjct 724 AGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDS 773 >sp|A8AJ07|UVRB_CITK8 UvrABC system protein B OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) OX=290338 GN=uvrB PE=3 SV=1 Length=673 Score = 38.1 bits (87), Expect = 0.32, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 >sp|Q7NJH7|UVRB_GLOVI UvrABC system protein B OS=Gloeobacter violaceus (strain ATCC 29082 / PCC 7421) OX=251221 GN=uvrB PE=3 SV=1 Length=680 Score = 38.1 bits (87), Expect = 0.32, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E++Q + G ++L+ ++ EGLD+P ++V + G L E S++Q GRA Sbjct 499 EILQALRQGDFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRA 554 >sp|Q54G57|ASCC3_DICDI Activating signal cointegrator 1 complex subunit 3 OS=Dictyostelium discoideum OX=44689 GN=ascc3 PE=3 SV=1 Length=2195 Score = 38.1 bits (87), Expect = 0.32, Method: Compositional matrix adjust. Identities = 45/175 (26%), Positives = 78/175 (45%), Gaps = 38/175 (22%) Query 17 GKNIIIWLPTGAGKTRAAAYVAKRHLET---------VDGAKVVVLVNRVHLVTQHGEEF 67 +NI+I PTGAGKT A +E+ D K++ + L ++ E+F Sbjct 498 NENILISAPTGAGKTNIALLTILHEIESNINPYGYLDKDNFKIIYIAPLKALASEMVEKF 557 Query 68 RRMLDGRWTVTT-LSGDMGPRAGFGHLARCHDLLICTAEL--LQMALTSPE-------EE 117 L V+ L+GDM + EL Q+ +T+PE + Sbjct 558 SNSLKYLGIVSKELTGDMQ---------------LTQKELKETQIIVTTPEKWDVITRKS 602 Query 118 EHVELT-VFSLIVVDECH--HTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS 169 V LT + LI++DE H H + V I+++ L +++ Q + +++GL+A+ Sbjct 603 SDVALTKLVRLIIIDEIHLLHEERGPVLECIVARTLR-QVETTQEMIRIVGLSAT 656 >sp|A8WK63|RECQ1_CAEBR Putative ATP-dependent DNA helicase Q1 OS=Caenorhabditis briggsae OX=6238 GN=CBG24191 PE=3 SV=1 Length=618 Score = 38.1 bits (87), Expect = 0.33, Method: Compositional matrix adjust. Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 17/135 (13%) Query 341 LATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRA 400 L G E+ +E + + ++R+FS GII+ +R L + L+ IRA Sbjct 286 LTKPGSEDECVEKIVRTIKRKFSGKT---GIIYCLSRNDCEKL------AKSLKANGIRA 336 Query 401 QLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT 460 + +M D+ QK+ G + ++VAT G+D P V+ + L Sbjct 337 K--------HYHAYMEPVDRSAAHQKWVSGEIQVIVATVAFGMGIDKPDVRFVIHHSLPK 388 Query 461 NEISMVQARGRARAD 475 + + Q GRA D Sbjct 389 SIENYYQESGRAGRD 403 >sp|A1CX72|PRP28_NEOFI Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=prp28 PE=3 SV=1 Length=796 Score = 38.1 bits (87), Expect = 0.33, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 56/107 (52%), Gaps = 8/107 (7%) Query 407 GNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 G SS + H TQ ++ + ++G+ ++LVAT +A G+D+P ++VV + + + S Sbjct 658 GFSSVTLHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMANSIES 717 Query 465 MVQARGR-ARADQSVYA--FVATEGSR---ELKRELINEALETLMEQ 505 GR RA +S A F+ E + +LK+ L+ + + E+ Sbjct 718 YTHRIGRTGRAGKSGVAITFLGNEDADVMYDLKQMLMKSPISRVPEE 764 >sp|O59025|HELS_PYRHO ATP-dependent DNA helicase Hel308 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) OX=70601 GN=hel308 PE=3 SV=1 Length=715 Score = 38.1 bits (87), Expect = 0.33, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 71/161 (44%), Gaps = 21/161 (13%) Query 15 LEGKNIIIWLPTGAGKTRAAAY-VAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDG 73 L+G+N +I +PT +GKT A + R L+ +G K V LV L + +EF+ + Sbjct 37 LKGENALIAIPTASGKTLIAEIAIVNRLLK--EGGKAVYLVPLKALAEEKFKEFKDWEEL 94 Query 74 RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC 133 V +GD + +D++I TAE L + ++VVDE Sbjct 95 GLKVAMATGDYDSK---DEWLGGYDIIIATAEKFDSLLRHGSS----WIRNVKVLVVDEI 147 Query 134 H---HTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPG 171 H + I++Q L RA Q++GL+A+ G Sbjct 148 HLIGSRDRGATLEFIITQM----LNRA----QIIGLSATIG 180 >sp|A7E436|DBP8_SCLS1 ATP-dependent RNA helicase dbp8 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 GN=dbp8 PE=3 SV=1 Length=540 Score = 37.7 bits (86), Expect = 0.33, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 34/63 (54%), Gaps = 1/63 (2%) Query 413 THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR- 471 + + QR + + + +F+ +LVAT VA GLDIP +V+ Y + + + GR Sbjct 398 SKLPQRQRIDNLGRFRASAARILVATDVAARGLDIPEVGLVINYDVPRDPDDYIHRVGRT 457 Query 472 ARA 474 ARA Sbjct 458 ARA 460 >sp|Q03JK4|UVRB_STRTD UvrABC system protein B OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) OX=322159 GN=uvrB PE=3 SV=1 Length=668 Score = 38.1 bits (87), Expect = 0.33, Method: Compositional matrix adjust. Identities = 24/108 (22%), Positives = 49/108 (45%), Gaps = 7/108 (6%) Query 370 GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD 429 G I RT + + L ++ D ++ G + + ++ E+I+ + Sbjct 446 GEINARTEKGERVFVTTLTKKMAEDLTDYLKEM--GVKVKYMHSDIKTLERTEIIRDLRL 503 Query 430 GTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 G ++L+ ++ EG+D+P ++V + G L NE ++Q GRA Sbjct 504 GVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRA 551 >sp|Q1C942|UVRB_YERPA UvrABC system protein B OS=Yersinia pestis bv. Antiqua (strain Antiqua) OX=360102 GN=uvrB PE=3 SV=1 Length=671 Score = 38.1 bits (87), Expect = 0.33, Method: Compositional matrix adjust. Identities = 19/56 (34%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 >sp|A4TNQ1|UVRB_YERPP UvrABC system protein B OS=Yersinia pestis (strain Pestoides F) OX=386656 GN=uvrB PE=3 SV=1 Length=671 Score = 38.1 bits (87), Expect = 0.33, Method: Compositional matrix adjust. Identities = 19/56 (34%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 >sp|Q1CFQ8|UVRB_YERPN UvrABC system protein B OS=Yersinia pestis bv. Antiqua (strain Nepal516) OX=377628 GN=uvrB PE=3 SV=1 Length=671 Score = 38.1 bits (87), Expect = 0.33, Method: Compositional matrix adjust. Identities = 19/56 (34%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 >sp|A9R3D3|UVRB_YERPG UvrABC system protein B OS=Yersinia pestis bv. Antiqua (strain Angola) OX=349746 GN=uvrB PE=3 SV=1 Length=671 Score = 38.1 bits (87), Expect = 0.33, Method: Compositional matrix adjust. Identities = 19/56 (34%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 >sp|Q8ZGW7|UVRB_YERPE UvrABC system protein B OS=Yersinia pestis OX=632 GN=uvrB PE=3 SV=1 Length=671 Score = 38.1 bits (87), Expect = 0.33, Method: Compositional matrix adjust. Identities = 19/56 (34%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 >sp|Q5M3D5|UVRB_STRT2 UvrABC system protein B OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) OX=264199 GN=uvrB PE=3 SV=1 Length=668 Score = 38.1 bits (87), Expect = 0.34, Method: Compositional matrix adjust. Identities = 24/108 (22%), Positives = 49/108 (45%), Gaps = 7/108 (6%) Query 370 GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD 429 G I RT + + L ++ D ++ G + + ++ E+I+ + Sbjct 446 GEINARTEKGERVFVTTLTKKMAEDLTDYLKEM--GVKVKYMHSDIKTLERTEIIRDLRL 503 Query 430 GTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 G ++L+ ++ EG+D+P ++V + G L NE ++Q GRA Sbjct 504 GVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRA 551 >sp|Q5LYS1|UVRB_STRT1 UvrABC system protein B OS=Streptococcus thermophilus (strain CNRZ 1066) OX=299768 GN=uvrB PE=3 SV=1 Length=668 Score = 38.1 bits (87), Expect = 0.34, Method: Compositional matrix adjust. Identities = 24/108 (22%), Positives = 49/108 (45%), Gaps = 7/108 (6%) Query 370 GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD 429 G I RT + + L ++ D ++ G + + ++ E+I+ + Sbjct 446 GEINARTEKGERVFVTTLTKKMAEDLTDYLKEM--GVKVKYMHSDIKTLERTEIIRDLRL 503 Query 430 GTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 G ++L+ ++ EG+D+P ++V + G L NE ++Q GRA Sbjct 504 GVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRA 551 >sp|A7E449|DBP2_SCLS1 ATP-dependent RNA helicase dbp2 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 GN=dbp2 PE=3 SV=1 Length=572 Score = 37.7 bits (86), Expect = 0.34, Method: Compositional matrix adjust. Identities = 40/145 (28%), Positives = 70/145 (48%), Gaps = 21/145 (14%) Query 354 LEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQST 413 LEKI++ + + + +IFT T++ A + +L+Q G + I G+ Q+ Sbjct 388 LEKIMEDKDN-----KILIFTGTKRVADDITRFLRQD-GWPALSIH-------GDKQQN- 433 Query 414 HMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-A 472 +RD V+ +F+ G ++VAT VA G+D+ + V Y N + GR Sbjct 434 ---ERDW--VLNEFKTGKSPIMVATDVASRGIDVRNITHVFNYDYPNNSEDYIHRIGRTG 488 Query 473 RADQSVYAF-VATEGSRELKRELIN 496 RA Q A + T +++ R+L+N Sbjct 489 RAGQKGTAITLFTTDNQKQARDLVN 513 >sp|Q7S5R1|DBP3_NEUCR ATP-dependent RNA helicase dbp-3 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=dbp-3 PE=3 SV=1 Length=614 Score = 37.7 bits (86), Expect = 0.34, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 2/56 (4%) Query 401 QLLIGAGNSSQSTHMTQRDQQEV--IQKFQDGTLNLLVATSVAEEGLDIPHCNVVV 454 Q L G S H R Q ++ F+ GT +LVAT VA GLDIP +V+ Sbjct 468 QFLSRKGIKVASIHGDLRQDQRTRSLEAFKSGTTTVLVATDVAARGLDIPEVKLVI 523 >sp|Q86B47|Y8611_DROME Probable ATP-dependent RNA helicase CG8611 OS=Drosophila melanogaster OX=7227 GN=CG8611 PE=1 SV=1 Length=975 Score = 38.1 bits (87), Expect = 0.34, Method: Compositional matrix adjust. Identities = 23/61 (38%), Positives = 33/61 (54%), Gaps = 1/61 (2%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR 473 MTQ ++Q V + F+D +L+AT V G+D+P +VV+Y V GR AR Sbjct 688 MTQTERQGVFRGFRDCASCVLLATDVVGRGIDVPDIKLVVQYTPPQTTADFVHRVGRTAR 747 Query 474 A 474 A Sbjct 748 A 748 Score = 34.3 bits (77), Expect = 5.5, Method: Compositional matrix adjust. Identities = 38/146 (26%), Positives = 64/146 (44%), Gaps = 22/146 (15%) Query 2 ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYV-------AKRHLETVDGAKVVVLV 54 EL S Q + I L+GK++++ TG+GKT A A + ++ DG +V+V Sbjct 350 ELTSVQQKTIPEVLQGKDVLVRSQTGSGKTLAYALPLVELLQKQQPRIQRKDGVLALVIV 409 Query 55 NRVHLVTQHGEEFRRMLDG-RWTVT-TLSGDMGPRAGFGHLARCHDLLICTA-----ELL 107 LV Q E ++++ W V +L G ++ L + ++LI T LL Sbjct 410 PTRELVMQTYELIQKLVKPYTWIVPGSLLGGESRKSEKARLRKGINILIGTPGRLVDHLL 469 Query 108 QMALTSPEEEEHVELTVFSLIVVDEC 133 A +LT +++DE Sbjct 470 HTA--------SFKLTKLQFLILDEA 487 >sp|C4K6N8|UVRB_HAMD5 UvrABC system protein B OS=Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) OX=572265 GN=uvrB PE=3 SV=1 Length=671 Score = 38.1 bits (87), Expect = 0.34, Method: Compositional matrix adjust. Identities = 19/56 (34%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 >sp|Q9BUQ8|DDX23_HUMAN Probable ATP-dependent RNA helicase DDX23 OS=Homo sapiens OX=9606 GN=DDX23 PE=1 SV=3 Length=820 Score = 38.1 bits (87), Expect = 0.34, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 56/110 (51%), Gaps = 8/110 (7%) Query 383 LLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE--VIQKFQDGTLNLLVATSV 440 +++++ Q++G D+ A+ L G ++ + H + +Q + + G ++LVAT V Sbjct 667 IIIFVNQKKG---CDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDV 723 Query 441 AEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYA--FVATEGS 487 A G+DI ++VV Y + N + GR RA +S A F+ E S Sbjct 724 AGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDS 773 >sp|Q31ES7|UVRB_HYDCU UvrABC system protein B OS=Hydrogenovibrio crunogenus (strain DSM 25203 / XCL-2) OX=317025 GN=uvrB PE=3 SV=1 Length=678 Score = 38.1 bits (87), Expect = 0.34, Method: Compositional matrix adjust. Identities = 19/56 (34%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + G ++LV ++ EGLDIP ++V + G L ++ S++Q GRA Sbjct 486 EIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSDRSLIQTIGRA 541 >sp|A8GBD1|UVRB_SERP5 UvrABC system protein B OS=Serratia proteamaculans (strain 568) OX=399741 GN=uvrB PE=3 SV=1 Length=670 Score = 37.7 bits (86), Expect = 0.35, Method: Compositional matrix adjust. Identities = 19/56 (34%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 >sp|B1JSR9|UVRB_YERPY UvrABC system protein B OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) OX=502800 GN=uvrB PE=3 SV=1 Length=671 Score = 37.7 bits (86), Expect = 0.35, Method: Compositional matrix adjust. Identities = 19/56 (34%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 >sp|Q66D62|UVRB_YERPS UvrABC system protein B OS=Yersinia pseudotuberculosis serotype I (strain IP32953) OX=273123 GN=uvrB PE=3 SV=1 Length=671 Score = 37.7 bits (86), Expect = 0.35, Method: Compositional matrix adjust. Identities = 19/56 (34%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 >sp|B2K8T5|UVRB_YERPB UvrABC system protein B OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) OX=502801 GN=uvrB PE=3 SV=1 Length=671 Score = 37.7 bits (86), Expect = 0.35, Method: Compositional matrix adjust. Identities = 19/56 (34%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 >sp|A7FKM4|UVRB_YERP3 UvrABC system protein B OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) OX=349747 GN=uvrB PE=3 SV=1 Length=671 Score = 37.7 bits (86), Expect = 0.35, Method: Compositional matrix adjust. Identities = 19/56 (34%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 >sp|Q2UQI6|DRS1_ASPOR ATP-dependent RNA helicase drs1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=drs1 PE=3 SV=2 Length=820 Score = 38.1 bits (87), Expect = 0.35, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 63/124 (51%), Gaps = 16/124 (13%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 R I+F R ++ AH + + GL + ++A L G+ M+Q + ++ F+ Sbjct 549 RVIVFFRQKKEAHRVRIAF----GL--LGLKAAELHGS--------MSQEQRIRSVENFR 594 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRY-GLLTNEISMVQARGRARADQSVYA-FVATEG 486 +G ++ L+AT +A GLDI V+ Y ++EI + + ARA +S A +A E Sbjct 595 EGKVSFLLATDLAARGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEP 654 Query 487 SREL 490 R++ Sbjct 655 DRKV 658 >sp|Q7MM80|UVRB_VIBVY UvrABC system protein B OS=Vibrio vulnificus (strain YJ016) OX=196600 GN=uvrB PE=3 SV=2 Length=676 Score = 37.7 bits (86), Expect = 0.35, Method: Compositional matrix adjust. Identities = 19/56 (34%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 488 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 543 >sp|Q8D891|UVRB_VIBVU UvrABC system protein B OS=Vibrio vulnificus (strain CMCP6) OX=216895 GN=uvrB PE=3 SV=1 Length=676 Score = 37.7 bits (86), Expect = 0.35, Method: Compositional matrix adjust. Identities = 19/56 (34%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 488 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 543 >sp|Q3MSQ8|DDX4_PELLE Probable ATP-dependent RNA helicase DDX4 OS=Pelophylax lessonae OX=45623 GN=ddx4 PE=2 SV=1 Length=724 Score = 37.7 bits (86), Expect = 0.36, Method: Compositional matrix adjust. Identities = 30/127 (24%), Positives = 60/127 (47%), Gaps = 22/127 (17%) Query 345 GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI 404 G ++ +E+L++I S R ++F +T++ A + +L Q++ T Sbjct 524 GKKDKLMEILQEI--------GSERTMVFVKTKKKADFIATFLCQEKVPST--------- 566 Query 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 S Q++++ ++ F+ G ++VATSVA GLDI + + V+ + + + Sbjct 567 -----SIHGDREQKERETALRDFRTGQCPVIVATSVAARGLDIENVSYVINFDIPDDIDE 621 Query 465 MVQARGR 471 V GR Sbjct 622 YVHRIGR 628 >sp|Q9NQI0|DDX4_HUMAN Probable ATP-dependent RNA helicase DDX4 OS=Homo sapiens OX=9606 GN=DDX4 PE=1 SV=2 Length=724 Score = 37.7 bits (86), Expect = 0.36, Method: Compositional matrix adjust. Identities = 28/103 (27%), Positives = 48/103 (47%), Gaps = 14/103 (14%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 R ++F T++ A + +L Q++ + T I QR++++ + F+ Sbjct 542 RTMVFVETKKKADFIATFLCQEK-ISTTSIHGD-------------REQREREQALGDFR 587 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 G +LVATSVA GLDI + V+ + L + V GR Sbjct 588 FGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGR 630 >sp|Q5JGV6|HELS_THEKO ATP-dependent DNA helicase Hel308 OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) OX=69014 GN=hel308 PE=3 SV=1 Length=1125 Score = 38.1 bits (87), Expect = 0.36, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 67/159 (42%), Gaps = 13/159 (8%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGR 74 LEGKN+++ +PT +GKT + V L + +G K V LV L + EF+ Sbjct 37 LEGKNLVLAIPTASGKTLVSEIVMVNKLLS-EGGKAVYLVPLKALAEEKYREFKEWEVLG 95 Query 75 WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECH 134 V +GD + L R +D+++ TAE L + L+V DE H Sbjct 96 LRVAATTGDYDSTDEW--LGR-YDIIVATAEKFDSLLRHGAS----WIKDVKLVVADEVH 148 Query 135 HTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTG 173 + + LE+ L Q+L L+A+ G Sbjct 149 -----LIGSYDRGATLEMILTHMLGKAQILALSATVGNA 182 >sp|O02494|IF4A_CRYPV Eukaryotic initiation factor 4A OS=Cryptosporidium parvum OX=5807 GN=EIF4-A PE=2 SV=1 Length=405 Score = 37.7 bits (86), Expect = 0.36, Method: Compositional matrix adjust. Identities = 16/64 (25%), Positives = 37/64 (58%), Gaps = 0/64 (0%) Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 SS M Q+D++ ++++F+ G+ +L+ T + G+D+ ++V+ Y L + + + Sbjct 298 SSMHGDMDQKDREVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPVSPETYIHR 357 Query 469 RGRA 472 GR+ Sbjct 358 IGRS 361 >sp|Q8G5L9|UVRB_BIFLO UvrABC system protein B OS=Bifidobacterium longum (strain NCC 2705) OX=206672 GN=uvrB PE=3 SV=1 Length=703 Score = 37.7 bits (86), Expect = 0.36, Method: Compositional matrix adjust. Identities = 21/82 (26%), Positives = 45/82 (55%), Gaps = 5/82 (6%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRARADQ 476 E+++ ++G ++++V ++ EGLD+P ++V + G L + S++Q GRA + Sbjct 492 ELLRMLREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTIGRAARNV 551 Query 477 SVYAFVATEGSRELKRELINEA 498 S + + + E R+ I+E Sbjct 552 SGTVIMYADETTEAMRQAIDET 573 >sp|Q8RGR2|UVRB_FUSNN UvrABC system protein B OS=Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / DSM 15643 / BCRC 10681 / CIP 101130 / JCM 8532 / KCTC 2640 / LMG 13131 / VPI 4355) OX=190304 GN=uvrB PE=3 SV=1 Length=663 Score = 37.7 bits (86), Expect = 0.36, Method: Compositional matrix adjust. Identities = 22/77 (29%), Positives = 42/77 (55%), Gaps = 9/77 (12%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRARADQ 476 E+I+ + G +++++ ++ EGLDIP ++V + G L + S+VQ GRA + Sbjct 488 EIIRALRKGEIDVIIGINLLREGLDIPEVSLVAIMEADKEGFLRSRRSLVQTIGRAARNV 547 Query 477 S----VYAFVATEGSRE 489 +YA + T+ +E Sbjct 548 EGRVILYADIMTDSMKE 564 >sp|Q8DHC6|UVRB_THEVB UvrABC system protein B OS=Thermosynechococcus vestitus (strain NIES-2133 / IAM M-273 / BP-1) OX=197221 GN=uvrB PE=3 SV=1 Length=668 Score = 37.7 bits (86), Expect = 0.36, Method: Compositional matrix adjust. Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 9/73 (12%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA---- 472 E+++ + G ++L+ ++ EGLD+P ++V + G L E S++Q GRA Sbjct 486 EILEALRQGDFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAARHV 545 Query 473 RADQSVYAFVATE 485 R +YA TE Sbjct 546 RGQAILYADTLTE 558 >sp|A1JSC3|UVRB_YERE8 UvrABC system protein B OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081) OX=393305 GN=uvrB PE=3 SV=1 Length=670 Score = 37.7 bits (86), Expect = 0.37, Method: Compositional matrix adjust. Identities = 19/56 (34%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 >sp|C6DDU0|UVRB_PECCP UvrABC system protein B OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) OX=561230 GN=uvrB PE=3 SV=1 Length=670 Score = 37.7 bits (86), Expect = 0.37, Method: Compositional matrix adjust. Identities = 19/56 (34%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 >sp|B2VBW9|UVRB_ERWT9 UvrABC system protein B OS=Erwinia tasmaniensis (strain DSM 17950 / CFBP 7177 / CIP 109463 / NCPPB 4357 / Et1/99) OX=465817 GN=uvrB PE=3 SV=1 Length=674 Score = 37.7 bits (86), Expect = 0.37, Method: Compositional matrix adjust. Identities = 19/56 (34%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 487 EIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 >sp|Q6D3C4|UVRB_PECAS UvrABC system protein B OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) OX=218491 GN=uvrB PE=3 SV=1 Length=670 Score = 37.7 bits (86), Expect = 0.38, Method: Compositional matrix adjust. Identities = 19/56 (34%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 >sp|O75417|DPOLQ_HUMAN DNA polymerase theta OS=Homo sapiens OX=9606 GN=POLQ PE=1 SV=2 Length=2590 Score = 38.1 bits (87), Expect = 0.38, Method: Compositional matrix adjust. Identities = 38/141 (27%), Positives = 60/141 (43%), Gaps = 22/141 (16%) Query 4 RSYQWE----VIMPALEGKNIIIWLPTGAGKTRAAA-YVAKRHLETVDGAKVV-----VL 53 + ++W+ ++ LEGKN++ PT AGKT A + KR LE A + V Sbjct 91 KMFEWQAECLLLGQVLEGKNLVYSAPTSAGKTLVAELLILKRVLEMRKKALFILPFVSVA 150 Query 54 VNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTS 113 + + + +E +DG G P F L D+ +CT E + Sbjct 151 KEKKYYLQSLFQEVGIKVDGYM------GSTSPSRHFSSL----DIAVCTIERANGLINR 200 Query 114 PEEEEHVELTVFSLIVVDECH 134 EE ++L ++VVDE H Sbjct 201 LIEENKMDL--LGMVVVDELH 219 >sp|Q5ZI74|DHX30_CHICK ATP-dependent RNA helicase DHX30 OS=Gallus gallus OX=9031 GN=DHX30 PE=2 SV=1 Length=1231 Score = 38.1 bits (87), Expect = 0.38, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 76/172 (44%), Gaps = 29/172 (17%) Query 382 SLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ-----STHMTQRDQQEVIQKFQDGTLNLLV 436 +L +L Q ++ V R ++G+ NS +++ DQQ + Q+ G +++ Sbjct 713 GILCFLPGWQEIKGVQQRLLEMLGSQNSRYLVLPVHSNIPMMDQQNIFQRPPPGVRKIVL 772 Query 437 ATSVAEEGLDIPHCNVVV--------RYGLLT----------NEISMVQARGRARADQSV 478 AT++AE + I VV RY L T ++ ++VQ RGRA QS Sbjct 773 ATNIAETSITINDIVHVVDSGTHKEERYDLKTKVSCLETVWVSKSNVVQRRGRAGRCQSG 832 Query 479 YAFVATEGSRELKR------ELINEALETLMEQAVAAVQKMDQAEYQAKIRD 524 +A+ SR K E++ LE L+ QA + + E+ +K D Sbjct 833 FAYHLFPRSRLDKMPTYQVPEILRTPLENLVVQAKIHMPEKTAVEFLSKALD 884 >sp|A6SCT6|DBP3_BOTFB ATP-dependent RNA helicase dbp3 OS=Botryotinia fuckeliana (strain B05.10) OX=332648 GN=dbp3 PE=3 SV=2 Length=603 Score = 37.7 bits (86), Expect = 0.39, Method: Compositional matrix adjust. Identities = 26/109 (24%), Positives = 50/109 (46%), Gaps = 14/109 (13%) Query 346 PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 P + + +++ + Q Q S R ++F ++ A + +++Q+ G + I L Sbjct 418 PRDKEYRLMQLLKQYQSGSQKDDRILVFCLYKKEATRVESFIRQK-GFRVAGIHGDL--- 473 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV 454 +Q + ++ F+ G +LVAT VA GLDIP +V+ Sbjct 474 ----------SQEQRTRSLEAFKSGNTPVLVATDVAARGLDIPAVKLVI 512 >sp|A3Q9R3|RHLB_SHELP ATP-dependent RNA helicase RhlB OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) OX=323850 GN=rhlB PE=3 SV=1 Length=435 Score = 37.7 bits (86), Expect = 0.39, Method: Compositional matrix adjust. Identities = 36/129 (28%), Positives = 56/129 (43%), Gaps = 15/129 (12%) Query 349 PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN 408 P +E ++L + I+F+ T+ S +L W L+ R LL G Sbjct 238 PSMEDKMRLLLTLIEEDWPEKAIVFSNTKHSCENL--WAH----LEGDGHRVGLLTG--- 288 Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 + Q+ + ++++F G L++LVAT VA GL I + V Y L + V Sbjct 289 -----DVPQKKRIRILEQFTKGELDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHR 343 Query 469 RGR-ARADQ 476 GR RA Q Sbjct 344 IGRTGRAGQ 352 >sp|A1DG51|DBP3_NEOFI ATP-dependent RNA helicase dbp3 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dbp3 PE=3 SV=1 Length=503 Score = 37.7 bits (86), Expect = 0.39, Method: Compositional matrix adjust. Identities = 28/85 (33%), Positives = 41/85 (48%), Gaps = 4/85 (5%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL-LTNE--ISMVQARGR 471 + Q ++ + ++ F+ G +LVAT VA GLDIP +V+ LT E + + GR Sbjct 372 LNQHERFKSLEAFKTGAATVLVATDVAARGLDIPSVKLVINVTFPLTVEDYVHRIGRTGR 431 Query 472 ARADQSVYAFVATEGSRELKRELIN 496 A AD TE + LIN Sbjct 432 AGADGHAITLF-TETDKAQSGALIN 455 >sp|B4ESU7|UVRB_PROMH UvrABC system protein B OS=Proteus mirabilis (strain HI4320) OX=529507 GN=uvrB PE=3 SV=1 Length=669 Score = 37.7 bits (86), Expect = 0.40, Method: Compositional matrix adjust. Identities = 19/56 (34%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 >sp|A4R5B8|DBP10_PYRO7 ATP-dependent RNA helicase DBP10 OS=Pyricularia oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 GN=DBP10 PE=3 SV=1 Length=914 Score = 37.7 bits (86), Expect = 0.40, Method: Compositional matrix adjust. Identities = 21/59 (36%), Positives = 30/59 (51%), Gaps = 1/59 (2%) Query 424 IQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF 481 ++ F+ G N+LV T VA G+DIP V+ Y V GR ARA Q +++ Sbjct 408 VEDFRRGKTNILVVTDVAARGIDIPVLANVINYDFCDQPKVFVHRVGRTARAGQKGWSY 466 >sp|Q5E6B5|UVRB_ALIF1 UvrABC system protein B OS=Aliivibrio fischeri (strain ATCC 700601 / ES114) OX=312309 GN=uvrB PE=3 SV=1 Length=676 Score = 37.7 bits (86), Expect = 0.40, Method: Compositional matrix adjust. Identities = 19/56 (34%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 488 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 543 >sp|B2TQS8|UVRB_CLOBB UvrABC system protein B OS=Clostridium botulinum (strain Eklund 17B / Type B) OX=935198 GN=uvrB PE=3 SV=1 Length=657 Score = 37.7 bits (86), Expect = 0.40, Method: Compositional matrix adjust. Identities = 23/82 (28%), Positives = 44/82 (54%), Gaps = 6/82 (7%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGR-A 472 ++ ++I+ + G ++LV ++ EGLDIP +V + G L +E S++Q GR A Sbjct 482 ERMKIIRDLRLGEYDVLVGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGRAA 541 Query 473 RADQSVYAFVATEGSRELKREL 494 R +S A ++ +K+ + Sbjct 542 RNSESKVIMYADNITKSMKKAI 563 >sp|Q7N6Q1|UVRB_PHOLL UvrABC system protein B OS=Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01) OX=243265 GN=uvrB PE=3 SV=1 Length=669 Score = 37.7 bits (86), Expect = 0.40, Method: Compositional matrix adjust. Identities = 19/56 (34%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 >sp|A8ACT3|RHLB_CITK8 ATP-dependent RNA helicase RhlB OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) OX=290338 GN=rhlB PE=3 SV=1 Length=421 Score = 37.4 bits (85), Expect = 0.41, Method: Compositional matrix adjust. Identities = 35/133 (26%), Positives = 57/133 (43%), Gaps = 19/133 (14%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +++ ++ R I+F T+ + W L R LL G Sbjct 243 KMRLLQTLIEEEWPD----RAIVFANTKHRCEDI--WGH----LAADGHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q+ + ++ +F G L++LVAT VA GL IP V Y L + V Sbjct 289 ----DVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI 344 Query 470 GR-ARADQSVYAF 481 GR RA S ++ Sbjct 345 GRTGRAGASGHSI 357 >sp|A7EYW0|DBP3_SCLS1 ATP-dependent RNA helicase dbp3 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 GN=dbp3 PE=3 SV=2 Length=596 Score = 37.7 bits (86), Expect = 0.41, Method: Compositional matrix adjust. Identities = 26/109 (24%), Positives = 50/109 (46%), Gaps = 14/109 (13%) Query 346 PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 P + + +++ + Q Q S R ++F ++ A + +++Q+ G + I L Sbjct 411 PRDKEYRLMQLLKQYQSGSQKDDRILVFCLYKKEATRVEGFIRQK-GFRVAGIHGDL--- 466 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV 454 +Q + ++ F+ G +LVAT VA GLDIP +V+ Sbjct 467 ----------SQEQRTRSLEAFKSGNTPVLVATDVAARGLDIPAVKLVI 505 >sp|A7I3X8|UVRB_CAMHC UvrABC system protein B OS=Campylobacter hominis (strain ATCC BAA-381 / DSM 21671 / CCUG 45161 / LMG 19568 / NCTC 13146 / CH001A) OX=360107 GN=uvrB PE=3 SV=1 Length=657 Score = 37.7 bits (86), Expect = 0.41, Method: Compositional matrix adjust. Identities = 16/59 (27%), Positives = 34/59 (58%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+I+ + G ++L+ ++ EGLD+P +++ + G L + S++Q GRA Sbjct 486 ERNELIRGLRTGDFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSRTSLIQTMGRA 544 >sp|Q8F8A9|UVRB_LEPIN UvrABC system protein B OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain 56601) OX=189518 GN=uvrB PE=3 SV=1 Length=666 Score = 37.7 bits (86), Expect = 0.41, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 33/59 (56%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 D+ +I+ + G ++L+ ++ EGLDIP ++V + G L N S++Q GRA Sbjct 482 DRVGIIRDLRKGIYDVLIGINLLREGLDIPEVSLVAILDADKEGFLRNYKSLIQTIGRA 540 >sp|Q72N95|UVRB_LEPIC UvrABC system protein B OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni (strain Fiocruz L1-130) OX=267671 GN=uvrB PE=3 SV=1 Length=666 Score = 37.7 bits (86), Expect = 0.41, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 33/59 (56%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 D+ +I+ + G ++L+ ++ EGLDIP ++V + G L N S++Q GRA Sbjct 482 DRVGIIRDLRKGIYDVLIGINLLREGLDIPEVSLVAILDADKEGFLRNYKSLIQTIGRA 540 >sp|A3N031|UVRB_ACTP2 UvrABC system protein B OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) OX=416269 GN=uvrB PE=3 SV=1 Length=673 Score = 37.7 bits (86), Expect = 0.42, Method: Compositional matrix adjust. Identities = 19/56 (34%), Positives = 32/56 (57%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 490 EIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 545 >sp|B2UZZ0|UVRB_CLOBA UvrABC system protein B OS=Clostridium botulinum (strain Alaska E43 / Type E3) OX=508767 GN=uvrB PE=3 SV=1 Length=657 Score = 37.7 bits (86), Expect = 0.42, Method: Compositional matrix adjust. Identities = 23/80 (29%), Positives = 43/80 (54%), Gaps = 6/80 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGR-A 472 ++ ++I+ + G ++LV ++ EGLDIP +V + G L +E S++Q GR A Sbjct 482 ERMKIIRDLRLGEYDVLVGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGRAA 541 Query 473 RADQSVYAFVATEGSRELKR 492 R +S A ++ +K+ Sbjct 542 RNSESKVIMYADNITKSMKK 561 >sp|A8G828|RHLB_SERP5 ATP-dependent RNA helicase RhlB OS=Serratia proteamaculans (strain 568) OX=399741 GN=rhlB PE=3 SV=1 Length=428 Score = 37.4 bits (85), Expect = 0.43, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 57/133 (43%), Gaps = 19/133 (14%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +++ ++ R IIF T+ + W L R LL G Sbjct 243 KMRLLQTLIEEEWPD----RCIIFANTKHRCEDV--WGH----LAADGHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q+ + ++ F G L++LVAT VA GL IP V Y L + V Sbjct 289 ----DVAQKKRLRILDDFTKGNLDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRI 344 Query 470 GR-ARADQSVYAF 481 GR RA +S ++ Sbjct 345 GRTGRAGESGHSI 357 >sp|Q9V3C0|DDX41_DROME ATP-dependent RNA helicase abstrakt OS=Drosophila melanogaster OX=7227 GN=abs PE=1 SV=1 Length=619 Score = 37.7 bits (86), Expect = 0.43, Method: Compositional matrix adjust. Identities = 27/102 (26%), Positives = 55/102 (54%), Gaps = 10/102 (10%) Query 377 RQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE---VIQKFQDGTLN 433 +++A +L++ +++Q VD + L+ G + + H +DQ+E + ++ G + Sbjct 425 QKTAPPVLIFAEKKQ---DVDCIHEYLLLKGVEAVAIH-GGKDQEERSRAVDAYRVGKKD 480 Query 434 LLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGRA 472 +LVAT VA +GLD P+ V+ Y + + N + + GR+ Sbjct 481 VLVATDVASKGLDFPNVQHVINYDMPDDIENYVHRIGRTGRS 522 >sp|Q5W5U4|DDX4_BOVIN Probable ATP-dependent RNA helicase DDX4 OS=Bos taurus OX=9913 GN=DDX4 PE=2 SV=1 Length=729 Score = 37.7 bits (86), Expect = 0.44, Method: Compositional matrix adjust. Identities = 31/130 (24%), Positives = 57/130 (44%), Gaps = 17/130 (13%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 R ++F T++ A + +L Q++ + T I QR++++ + F+ Sbjct 544 RTMVFVETKKKADFIATFLCQEK-ISTTSIHGD-------------REQREREQALGDFR 589 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGRARADQSVYAFVATE 485 G +LVATSVA GLDI + V+ + L + + + GR +F E Sbjct 590 CGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLE 649 Query 486 GSRELKRELI 495 +L + L+ Sbjct 650 SDSQLAQPLV 659 >sp|Q4UMJ0|MFD_RICFE Transcription-repair-coupling factor OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) OX=315456 GN=mfd PE=3 SV=1 Length=1142 Score = 37.7 bits (86), Expect = 0.44, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 2/78 (3%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN-VVVRYGLLTNEISMVQARGR-A 472 MT EV+ +F G ++LV+T++ E G+DI N +V+ + + Q RGR Sbjct 826 MTPSKIDEVMSEFYAGKFDILVSTTIIESGIDIAEANTMVIHKADMLGLSQLYQLRGRIG 885 Query 473 RADQSVYAFVATEGSREL 490 R YA++ +++ Sbjct 886 RGKVRGYAYLTVASHKKM 903 >sp|A7EAY2|MAK5_SCLS1 ATP-dependent RNA helicase mak5 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 GN=mak5 PE=3 SV=1 Length=780 Score = 37.7 bits (86), Expect = 0.45, Method: Compositional matrix adjust. Identities = 38/112 (34%), Positives = 51/112 (46%), Gaps = 17/112 (15%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 R +IFT + S L LQ T++I A L + M Q+ + I+KF Sbjct 505 RTLIFTNSIHSVRRLTPMLQ------TLNIPAHSL--------HSQMIQKARMRSIEKFS 550 Query 429 --DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQS 477 + T ++LVAT VA GLDI +V+ Y L V GR ARA S Sbjct 551 RTNNTGSVLVATDVAARGLDIGGVQLVIHYHLPRTADMYVHRSGRTARAAAS 602 >sp|Q9SZB4|RH43_ARATH Putative DEAD-box ATP-dependent RNA helicase 43 OS=Arabidopsis thaliana OX=3702 GN=RH43 PE=3 SV=1 Length=542 Score = 37.4 bits (85), Expect = 0.46, Method: Compositional matrix adjust. Identities = 22/69 (32%), Positives = 32/69 (46%), Gaps = 3/69 (4%) Query 417 QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY---GLLTNEISMVQARGRAR 473 Q D+ I F+ G ++LVAT VA +GLD P V+ Y G + N + + GR Sbjct 384 QEDRDYAISLFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGRCG 443 Query 474 ADQSVYAFV 482 F+ Sbjct 444 KTGIATTFI 452 >sp|Q4HZ42|DBP10_GIBZE ATP-dependent RNA helicase DBP10 OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=DBP10 PE=3 SV=1 Length=897 Score = 37.7 bits (86), Expect = 0.46, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 56/122 (46%), Gaps = 6/122 (5%) Query 363 SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQ 420 S RG + + HS +++ + ++ + A LLI AG + + + Q + Sbjct 338 GSKKRKRGADGGSGKPTEHSTIIFTATKHHVEYL---ANLLIYAGFAVSYVYGSLDQTAR 394 Query 421 QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVY 479 + ++ F+ G N+LV T VA G+DIP V+ + V GR ARA Q + Sbjct 395 RIQVEDFRMGKTNILVVTDVAARGIDIPVLANVINFDFPPQPKVFVHRVGRTARAGQRGW 454 Query 480 AF 481 ++ Sbjct 455 SY 456 >sp|Q84TG1|RH57_ARATH DEAD-box ATP-dependent RNA helicase 57 OS=Arabidopsis thaliana OX=3702 GN=RH57 PE=2 SV=1 Length=541 Score = 37.4 bits (85), Expect = 0.46, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 60/129 (47%), Gaps = 9/129 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA--AAYVAKRHLETVDGAKVVVLVNRVHLVTQHG 64 Q + I L G+ PTG+GKT A + K + DG + V+L L Q Sbjct 168 QRQAIPILLSGRECFACAPTGSGKTFAFICPMLIKLKRPSTDGIRAVILSPARELAAQTA 227 Query 65 EEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELT 123 E ++++ G + + ++ + A F L C D+LI T L+ A+ + + ++L+ Sbjct 228 REGKKLIKGSNFHIRLMTKPLVKTADFSKLW-C-DVLISTPMRLKRAIKA----KKIDLS 281 Query 124 VFSLIVVDE 132 +V+DE Sbjct 282 KVEYLVLDE 290 Score = 37.0 bits (84), Expect = 0.69, Method: Compositional matrix adjust. Identities = 28/121 (23%), Positives = 58/121 (48%), Gaps = 15/121 (12%) Query 358 LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ 417 L++ F+ S +P +IF ++++ A L L+ +IRA ++ + + Sbjct 371 LRQSFAESLNPPVLIFVQSKERAKELY------DELKCENIRAGVI--------HSDLPP 416 Query 418 RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA-RADQ 476 +++ + +F+ G +L+AT V G+D N V+ Y + + + GR+ RA + Sbjct 417 GERENAVDQFRAGEKWVLIATDVIARGMDFKGINCVINYDFPDSASAYIHRIGRSGRAGR 476 Query 477 S 477 S Sbjct 477 S 477 >sp|Q4R5S7|DDX4_MACFA Probable ATP-dependent RNA helicase DDX4 OS=Macaca fascicularis OX=9541 GN=DDX4 PE=2 SV=1 Length=725 Score = 37.4 bits (85), Expect = 0.46, Method: Compositional matrix adjust. Identities = 28/103 (27%), Positives = 48/103 (47%), Gaps = 14/103 (14%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 R ++F T++ A + +L Q++ + T I QR++++ + F+ Sbjct 543 RTMVFVETKKKADFIATFLCQEK-ISTTSIHGD-------------REQREREQALGDFR 588 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 G +LVATSVA GLDI + V+ + L + V GR Sbjct 589 CGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGR 631 >sp|A1DNG2|DBP10_NEOFI ATP-dependent RNA helicase dbp10 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dbp10 PE=3 SV=1 Length=934 Score = 37.7 bits (86), Expect = 0.47, Method: Compositional matrix adjust. Identities = 20/59 (34%), Positives = 31/59 (53%), Gaps = 1/59 (2%) Query 424 IQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF 481 +Q F+ G N+LV T VA G+DIP V+ Y + + GR ARA + +++ Sbjct 417 VQNFRTGMTNILVVTDVAARGIDIPILANVINYDFPSQPKIFIHRVGRTARAGRKGWSY 475 >sp|Q6GWX0|DDX4_PIG Probable ATP-dependent RNA helicase DDX4 OS=Sus scrofa OX=9823 GN=DDX4 PE=2 SV=1 Length=722 Score = 37.4 bits (85), Expect = 0.47, Method: Compositional matrix adjust. Identities = 28/103 (27%), Positives = 48/103 (47%), Gaps = 14/103 (14%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 R ++F T++ A + +L Q++ + T I QR++++ + F+ Sbjct 540 RTMVFVETKKKADFIATFLCQEK-ISTTSIHGD-------------REQREREQALGDFR 585 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 G +LVATSVA GLDI + V+ + L + V GR Sbjct 586 FGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGR 628 >sp|Q7UFR2|UVRB_RHOBA UvrABC system protein B OS=Rhodopirellula baltica (strain DSM 10527 / NCIMB 13988 / SH1) OX=243090 GN=uvrB PE=3 SV=1 Length=708 Score = 37.4 bits (85), Expect = 0.48, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 +++Q+ + G + LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 492 DLLQELRAGQFDCLVGVNLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRA 547 >sp|Q5BFU7|DBP10_EMENI ATP-dependent RNA helicase dbp10 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=dbp10 PE=3 SV=1 Length=936 Score = 37.4 bits (85), Expect = 0.49, Method: Compositional matrix adjust. Identities = 21/59 (36%), Positives = 31/59 (53%), Gaps = 1/59 (2%) Query 424 IQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF 481 +Q F+ G N+LV T VA G+DIP V+ Y + V GR ARA + +++ Sbjct 416 VQNFRTGISNILVVTDVAARGIDIPILANVINYDFPSQPKIFVHRVGRTARAGRKGWSY 474 >sp|E7F8F4|ASCC3_DANRE Activating signal cointegrator 1 complex subunit 3 OS=Danio rerio OX=7955 GN=ascc3 PE=3 SV=2 Length=1534 Score = 37.7 bits (86), Expect = 0.49, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 68/137 (50%), Gaps = 15/137 (11%) Query 19 NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLD---GRW 75 N+++ PTG+GKT AA R +KVV + LV + E+++ ++ GR Sbjct 906 NVLLGAPTGSGKTIAAEMAIFRVFNMYPTSKVVYIAPLKALVRERIEDWKIRIEEKLGR- 964 Query 76 TVTTLSGDMGP--RAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC 133 V L+GD P RA +A+ DL++ T E S + +V+ +++++DE Sbjct 965 KVVELTGDNTPDMRA----IAQA-DLIVTTPEKWDGVSRSWQNRSYVQKV--AILIIDEI 1017 Query 134 HHTHKD--TVYNVIMSQ 148 H +D V VI+S+ Sbjct 1018 HLLGEDRGPVLEVIVSR 1034 Score = 36.2 bits (82), Expect = 1.3, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 79/173 (46%), Gaps = 35/173 (20%) Query 18 KNIIIWLPTGAGKTRAAAYV----AKRHLET-----VDGAKVVVLVNRVHLVTQHGEEFR 68 +N++I PTGAGKT A ++HL+ D K+V + L + F Sbjct 90 ENLLICAPTGAGKTNIAMLTILHEIRQHLQPGGVIRKDQFKIVYVAPMKALAAEMTNYFS 149 Query 69 RMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELT---- 123 + L+ V L+GDM + G + R QM +T+PE+ + V Sbjct 150 KRLEPLGIAVKELTGDM--QLTKGEILRT-----------QMLVTTPEKWDVVTRKSVGD 196 Query 124 -----VFSLIVVDECHHTHKD--TVYNVIMSQYLELKLQRAQPLPQVLGLTAS 169 V L+++DE H H+D V ++++ L +++ Q + ++LGL+A+ Sbjct 197 VALSQVVRLLILDEVHLLHEDRGPVLESLVARTLR-QVESTQSMIRILGLSAT 248 >sp|Q9SF41|RH45_ARATH DEAD-box ATP-dependent RNA helicase 45 OS=Arabidopsis thaliana OX=3702 GN=RH45 PE=3 SV=1 Length=989 Score = 37.4 bits (85), Expect = 0.49, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 53/109 (49%), Gaps = 6/109 (6%) Query 418 RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGRARA 474 R Q++ I F+ NLL+ATSVA GLD+ +VV + + + V GRA Sbjct 651 RSQEKSISDFKSDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGR 710 Query 475 DQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIR 523 F++ + ++ +L+ +ALE L EQ V K + AK++ Sbjct 711 KGCAVTFISEDDAK-YAPDLV-KALE-LSEQPVPDDVKAVAEGFMAKVK 756 >sp|Q76PD3|DBP6_SCHPO ATP-dependent RNA helicase dbp6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=dbp6 PE=2 SV=1 Length=604 Score = 37.4 bits (85), Expect = 0.49, Method: Compositional matrix adjust. Identities = 20/71 (28%), Positives = 41/71 (58%), Gaps = 1/71 (1%) Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 ++ +++ +++++I +F G LNLLV + + G+D+ + V+ Y + S V GR Sbjct 468 TSSLSRDERKKIISRFATGDLNLLVCSDLMARGIDVANTQNVINYDPPLSVRSYVHRIGR 527 Query 472 -ARADQSVYAF 481 ARA + +A+ Sbjct 528 TARAGREGFAW 538 >sp|Q8TKS3|UVRB_METAC UvrABC system protein B OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) OX=188937 GN=uvrB PE=3 SV=1 Length=670 Score = 37.4 bits (85), Expect = 0.50, Method: Compositional matrix adjust. Identities = 31/135 (23%), Positives = 62/135 (46%), Gaps = 19/135 (14%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 R ++ T T++ A L +L + + I+A+ L + + T E+I++ + Sbjct 467 RALVTTLTKKLAEELTEFLARNE------IKARYLHSDIKTIERT--------EIIRELR 512 Query 429 DGTLNLLVATSVAEEGLDIPHCNVV-----VRYGLLTNEISMVQARGRARADQSVYAFVA 483 G ++LV ++ EGLDIP + + G L + S++Q GRA + S + Sbjct 513 LGKFDVLVGINLLREGLDIPEVGFIGILDADKEGFLRDSKSLIQIIGRAARNSSSKVVLY 572 Query 484 TEGSRELKRELINEA 498 + E ++ ++E Sbjct 573 ADNMTESIKKAVDET 587 >sp|Q9HMT9|UVRB_HALSA UvrABC system protein B OS=Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) OX=64091 GN=uvrB PE=3 SV=1 Length=689 Score = 37.4 bits (85), Expect = 0.50, Method: Compositional matrix adjust. Identities = 20/59 (34%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+++ + G ++LV ++ EGLDIP ++V + G L +E S+VQ GRA Sbjct 496 ERHELVRGLRLGEYDVLVGINLLREGLDIPEVSLVAILDADQQGFLRSETSLVQTMGRA 554 >sp|Q5X906|UVRB_LEGPA UvrABC system protein B OS=Legionella pneumophila (strain Paris) OX=297246 GN=uvrB PE=3 SV=1 Length=663 Score = 37.4 bits (85), Expect = 0.51, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 34/59 (58%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+I+ + G ++LV ++ EGLD+P +V + G L +E S++Q GRA Sbjct 483 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTIGRA 541 >sp|Q4FZF3|DDX49_MOUSE Probable ATP-dependent RNA helicase DDX49 OS=Mus musculus OX=10090 GN=Ddx49 PE=2 SV=1 Length=480 Score = 37.4 bits (85), Expect = 0.52, Method: Compositional matrix adjust. Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 0/44 (0%) Query 413 THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY 456 + M Q+++ + KF+ +L+AT VA GLDIP VV+ + Sbjct 280 SMMKQKERFAALAKFKSSIYRILIATDVASRGLDIPTVQVVINH 323 >sp|Q65ED8|UVRB_BACLD UvrABC system protein B OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / CCUG 7422 / NBRC 12200 / NCIMB 9375 / NCTC 10341 / NRRL NRS-1264 / Gibson 46) OX=279010 GN=uvrB PE=3 SV=1 Length=661 Score = 37.4 bits (85), Expect = 0.52, Method: Compositional matrix adjust. Identities = 20/56 (36%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + G ++LV ++ EGLDIP ++V + G L +E S++Q GRA Sbjct 486 EIIRDLRLGKHDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA 541 >sp|A5I9P3|UVRB_LEGPC UvrABC system protein B OS=Legionella pneumophila (strain Corby) OX=400673 GN=uvrB PE=3 SV=1 Length=663 Score = 37.4 bits (85), Expect = 0.52, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 34/59 (58%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+I+ + G ++LV ++ EGLD+P +V + G L +E S++Q GRA Sbjct 483 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTIGRA 541 >sp|C5BEJ2|UVRB_EDWI9 UvrABC system protein B OS=Edwardsiella ictaluri (strain 93-146) OX=634503 GN=uvrB PE=3 SV=1 Length=672 Score = 37.4 bits (85), Expect = 0.52, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 34/59 (58%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+I+ + G + LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 484 ERMEIIRDLRLGEFDALVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 >sp|Q5X0E6|UVRB_LEGPL UvrABC system protein B OS=Legionella pneumophila (strain Lens) OX=297245 GN=uvrB PE=3 SV=1 Length=663 Score = 37.4 bits (85), Expect = 0.54, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 34/59 (58%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+I+ + G ++LV ++ EGLD+P +V + G L +E S++Q GRA Sbjct 483 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTIGRA 541 >sp|O60072|ASCC3_SCHPO RQC trigger complex helicase rqt2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rqt2 PE=1 SV=1 Length=1935 Score = 37.4 bits (85), Expect = 0.54, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 74/155 (48%), Gaps = 10/155 (6%) Query 19 NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEF-RRMLDGR-WT 76 NI + PTG+GKT AA R L +KVV + LV + +++ R+++ + Sbjct 1152 NIFVGAPTGSGKTMAAELATWRALHNYPKSKVVYIAPMKALVKERVKDWGHRLVEPMGIS 1211 Query 77 VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHT 136 + L+GD P +++I T E S + ++V+ SLI++DE H Sbjct 1212 MIELTGDTNPDV---KAVTNANIIITTPEKWDGITRSWKSRKYVQDV--SLIILDEIHLL 1266 Query 137 HKD--TVYNVIMSQYLELKLQRAQPLPQVLGLTAS 169 D V +I+S+ + Q + + +VLGL+ + Sbjct 1267 GSDRGPVLEMIVSRMNYVASQTNKKV-RVLGLSTA 1300 >sp|Q65N62|CSHA_BACLD DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / CCUG 7422 / NBRC 12200 / NCIMB 9375 / NCTC 10341 / NRRL NRS-1264 / Gibson 46) OX=279010 GN=cshA PE=3 SV=1 Length=487 Score = 37.0 bits (84), Expect = 0.55, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 25/140 (18%) Query 347 ENPKLEMLEKILQRQFSSSNSPR-GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 E K + L ++L Q SP I+F RT++ L + +++R Sbjct 225 ERKKFDTLTRLLDIQ-----SPELAIVFGRTKRRVDELT---------EALNLR------ 264 Query 406 AGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI 463 G +++ H +TQ + ++KF+ G + +LVAT VA GLDI V + + + Sbjct 265 -GYTAEGIHGDLTQAKRMVALRKFKQGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPE 323 Query 464 SMVQARGR-ARADQSVYAFV 482 S V GR RA ++ A Sbjct 324 SYVHRIGRTGRAGKTGMAMT 343 >sp|Q4P7Z8|DBP5_USTMA ATP-dependent RNA helicase DBP5 OS=Ustilago maydis (strain 521 / FGSC 9021) OX=237631 GN=DBP5 PE=3 SV=1 Length=456 Score = 37.0 bits (84), Expect = 0.55, Method: Compositional matrix adjust. Identities = 20/67 (30%), Positives = 34/67 (51%), Gaps = 2/67 (3%) Query 394 QTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN 451 +T D AQ + G+ S H + D+ I F+DG +L++T+V G+DI Sbjct 313 ETADRIAQKMTQEGHKVDSLHGRLETADRDRTIDAFRDGKSKVLISTNVIARGIDIQQVT 372 Query 452 VVVRYGL 458 +V+ Y + Sbjct 373 LVINYDM 379 >sp|C4ZHN1|UVRB_AGARV UvrABC system protein B OS=Agathobacter rectalis (strain ATCC 33656 / DSM 3377 / JCM 17463 / KCTC 5835 / VPI 0990) OX=515619 GN=uvrB PE=3 SV=1 Length=660 Score = 37.4 bits (85), Expect = 0.55, Method: Compositional matrix adjust. Identities = 28/114 (25%), Positives = 55/114 (48%), Gaps = 19/114 (17%) Query 364 SSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEV 423 ++N + +I T T++ A L ++ + + IR + L + + ++ E+ Sbjct 440 TANHHKVLITTLTKRMAEDLTNYMAE------LGIRVKYL--------HSDIDTLERAEI 485 Query 424 IQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 I+ + ++LV ++ EGLDIP +V + G L +E S++Q GRA Sbjct 486 IRDLRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRA 539 >sp|Q4R8K5|IF4A1_MACFA Eukaryotic initiation factor 4A-I OS=Macaca fascicularis OX=9541 GN=EIF4A1 PE=2 SV=1 Length=406 Score = 37.0 bits (84), Expect = 0.55, Method: Compositional matrix adjust. Identities = 22/93 (24%), Positives = 46/93 (49%), Gaps = 14/93 (15%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 + +IF TR+ WL ++ + D A + G M Q+++ ++++F+ Sbjct 274 QAVIFINTRRKVD----WLTEK--MHARDFTASAMHG--------DMDQKERDVIMREFR 319 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN 461 G+ +L+ T + G+D+ ++V+ Y L TN Sbjct 320 SGSSRVLITTDLLARGIDVQQVSLVINYDLPTN 352 >sp|Q8N3C0|ASCC3_HUMAN Activating signal cointegrator 1 complex subunit 3 OS=Homo sapiens OX=9606 GN=ASCC3 PE=1 SV=3 Length=2202 Score = 37.4 bits (85), Expect = 0.56, Method: Compositional matrix adjust. Identities = 36/155 (23%), Positives = 75/155 (48%), Gaps = 10/155 (6%) Query 19 NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRW--T 76 N+++ PTG+GKT AA R +K V + LV + ++++ ++ + Sbjct 1344 NVLLGAPTGSGKTVAAELAIFRVFNKYPTSKAVYIAPLKALVRERMDDWKVRIEEKLGKK 1403 Query 77 VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECH-- 134 V L+GD+ P +A+ DL++ T E S + +V+ +++++DE H Sbjct 1404 VIELTGDVTP--DMKSIAKA-DLIVTTPEKWDGVSRSWQNRNYVQQV--TILIIDEIHLL 1458 Query 135 HTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS 169 + V VI+S+ + +P+ +++GL+ + Sbjct 1459 GEERGPVLEVIVSRTNFISSHTEKPV-RIVGLSTA 1492 Score = 37.0 bits (84), Expect = 0.89, Method: Compositional matrix adjust. Identities = 44/175 (25%), Positives = 80/175 (46%), Gaps = 38/175 (22%) Query 17 GKNIIIWLPTGAGKTRAAAYVA----KRHLE----TVDGAKVVVLVNRVHLVTQHGEEFR 68 +N++I PTGAGKT A ++H + + K+V + L + + F Sbjct 492 NENMLICAPTGAGKTNIAMLTVLHEIRQHFQQGVIKKNEFKIVYVAPMKALAAEMTDYFS 551 Query 69 RMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELL--QMALTSPEEEEHVELT-- 123 R L+ V L+GDM + +E+L QM +T+PE+ + V Sbjct 552 RRLEPLGIIVKELTGDMQ---------------LSKSEILRTQMLVTTPEKWDVVTRKSV 596 Query 124 -------VFSLIVVDECHHTHKD--TVYNVIMSQYLELKLQRAQPLPQVLGLTAS 169 + L+++DE H H+D V I+++ L +++ Q + ++LGL+A+ Sbjct 597 GDVALSQIVRLLILDEVHLLHEDRGPVLESIVARTLR-QVESTQSMIRILGLSAT 650 >sp|Q5ZZD9|UVRB_LEGPH UvrABC system protein B OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) OX=272624 GN=uvrB PE=3 SV=1 Length=663 Score = 37.4 bits (85), Expect = 0.57, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 34/59 (58%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+I+ + G ++LV ++ EGLD+P +V + G L +E S++Q GRA Sbjct 483 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTIGRA 541 >sp|Q9VNV3|DDX1_DROME ATP-dependent RNA helicase Ddx1 OS=Drosophila melanogaster OX=7227 GN=Ddx1 PE=2 SV=1 Length=727 Score = 37.4 bits (85), Expect = 0.57, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 64/152 (42%), Gaps = 25/152 (16%) Query 333 DRKNELAHLATHGPENPKLEMLEKILQRQF-----SSSNSPRGIIFTRTRQSAHSLLLWL 387 DR N H H E L K+L+ ++ N R IIF RT+Q +L +L Sbjct 470 DRDN--VHPGNHSKET--LSQAVKLLKGEYCVHAIDKHNMDRAIIFCRTKQDCDNLERFL 525 Query 388 QQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ--EVIQKFQDGTLNLLVATSVAEEGL 445 +Q+ G S H ++ Q+ E ++ F+ + L+ T VA GL Sbjct 526 RQRGGKHY-------------SCVCLHGDRKPQERKENLEMFKRQQVKFLICTDVAARGL 572 Query 446 DIPHCNVVVRYGLLTNEISMVQARGR-ARADQ 476 DI ++ L ++ + V GR RA++ Sbjct 573 DITGLPFMINVTLPDDKTNYVHRIGRVGRAER 604 >sp|Q9CJS1|RHLB_PASMU ATP-dependent RNA helicase RhlB OS=Pasteurella multocida (strain Pm70) OX=272843 GN=rhlB PE=3 SV=1 Length=423 Score = 37.0 bits (84), Expect = 0.58, Method: Compositional matrix adjust. Identities = 48/178 (27%), Positives = 71/178 (40%), Gaps = 38/178 (21%) Query 324 ERRLLALFDD----RKNELAHLATHGPENPKLEMLEK----ILQRQFSSSN--------- 366 + RL LF + ELA + PE ++E L+K I + F SN Sbjct 188 QHRLTMLFSATLSYKVRELAFEDMNDPEYVEIEPLQKTGHRIKEELFYPSNQDKMALLLT 247 Query 367 ------SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ 420 R IIF T+ + +L R LL G + Q+ + Sbjct 248 LLEEEWPERCIIFANTKHRCEDIWGYLAADGH------RVGLLTG--------DVAQKKR 293 Query 421 QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQS 477 ++++F +G L++LVAT VA GL I + V Y L + V GR RA +S Sbjct 294 LSLLKQFTEGHLDILVATDVAARGLHISDVSHVFNYDLPDDREDYVHRIGRTGRAGES 351 >sp|Q38YA4|UVRB_LATSS UvrABC system protein B OS=Latilactobacillus sakei subsp. sakei (strain 23K) OX=314315 GN=uvrB PE=3 SV=1 Length=667 Score = 37.4 bits (85), Expect = 0.59, Method: Compositional matrix adjust. Identities = 17/59 (29%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+I+ + G ++L+ ++ EG+D+P ++V + G L +E S++Q GRA Sbjct 488 ERTEIIRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRSERSLIQTIGRA 546 >sp|O26542|UVRB_METTH UvrABC system protein B OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) OX=187420 GN=uvrB PE=3 SV=1 Length=646 Score = 37.4 bits (85), Expect = 0.59, Method: Compositional matrix adjust. Identities = 19/56 (34%), Positives = 30/56 (54%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I + G + LV ++ EGLD+P +V + G L +E S++Q GRA Sbjct 484 EIIDDLRRGEFDCLVGVNLLREGLDLPEVALVAILDADKEGFLRSETSLIQTIGRA 539 >sp|Q7VLL3|UVRB_HAEDU UvrABC system protein B OS=Haemophilus ducreyi (strain 35000HP / ATCC 700724) OX=233412 GN=uvrB PE=3 SV=1 Length=675 Score = 37.4 bits (85), Expect = 0.59, Method: Compositional matrix adjust. Identities = 19/56 (34%), Positives = 31/56 (55%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I + G ++LV ++ EGLD+P +V + G L +E S++Q GRA Sbjct 490 EIIHDLRIGMFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSESSLIQTIGRA 545 >sp|A6M2Z0|UVRB_CLOB8 UvrABC system protein B OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) OX=290402 GN=uvrB PE=3 SV=1 Length=657 Score = 37.0 bits (84), Expect = 0.60, Method: Compositional matrix adjust. Identities = 20/74 (27%), Positives = 39/74 (53%), Gaps = 5/74 (7%) Query 404 IGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGL 458 +G + + + ++ ++I+ + G ++LV ++ EGLDIP +V + G Sbjct 467 LGVKTTYMHSDIDTIERMKIIRDLRLGEYDVLVGINLLREGLDIPEVALVAILDADKEGF 526 Query 459 LTNEISMVQARGRA 472 L +E S++Q GRA Sbjct 527 LRSETSLIQTIGRA 540 >sp|A1CNV8|DRS1_ASPCL ATP-dependent RNA helicase drs1 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=drs1 PE=3 SV=1 Length=826 Score = 37.4 bits (85), Expect = 0.60, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 14/88 (16%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 R I+F R ++ AH + + GL + ++A L G+ M+Q + + ++ F+ Sbjct 553 RVIVFFRQKKEAHRVRIVF----GL--LGLKAAELHGS--------MSQEQRIKSVESFR 598 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRY 456 +G + L+AT +A GLDI V+ Y Sbjct 599 EGKVAFLLATDLASRGLDIKGVETVINY 626 >sp|Q7RZH4|MAK5_NEUCR ATP-dependent RNA helicase mak-5 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=mak-5 PE=3 SV=1 Length=805 Score = 37.4 bits (85), Expect = 0.60, Method: Compositional matrix adjust. Identities = 22/53 (42%), Positives = 30/53 (57%), Gaps = 1/53 (2%) Query 426 KFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQS 477 K ++G+ +LVAT VA GLDIP ++V+ Y + V GR ARA S Sbjct 573 KKKNGSAAILVATDVAARGLDIPDVDLVIHYHVPRAAEDYVHRSGRTARASNS 625 >sp|Q6CX73|FAL1_KLULA ATP-dependent RNA helicase FAL1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=FAL1 PE=3 SV=1 Length=398 Score = 37.0 bits (84), Expect = 0.61, Method: Compositional matrix adjust. Identities = 23/86 (27%), Positives = 40/86 (47%), Gaps = 3/86 (3%) Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISM 465 SS M Q ++ +V+ F+ G +L++T V G+D+ ++V+ Y + L N I Sbjct 292 SSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHR 351 Query 466 VQARGRARADQSVYAFVATEGSRELK 491 + GR F+ E +LK Sbjct 352 IGRSGRFGRKGVAINFITKEERPKLK 377 >sp|Q0IE10|UVRB_SYNS3 UvrABC system protein B OS=Synechococcus sp. (strain CC9311) OX=64471 GN=uvrB PE=3 SV=1 Length=679 Score = 37.0 bits (84), Expect = 0.61, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 19/114 (17%) Query 364 SSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEV 423 +S R ++ T T++ A L +L + + +R + L H +R E+ Sbjct 441 ASKKQRVLVTTLTKRMAEDLTDYLAENK------VRVRYL------HSEIHSIER--IEI 486 Query 424 IQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 IQ + G ++LV ++ EGLD+P ++V + G L + S++Q GRA Sbjct 487 IQDLRLGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAQRSLIQTIGRA 540 >sp|Q650T9|RH7_ORYSJ DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0520700 PE=2 SV=1 Length=696 Score = 37.0 bits (84), Expect = 0.61, Method: Compositional matrix adjust. Identities = 27/91 (30%), Positives = 43/91 (47%), Gaps = 18/91 (20%) Query 365 SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI 424 S R IIFT T++SA L GL AG+ + + Q ++ ++ Sbjct 367 SRGGRTIIFTETKESASDL-------SGLI-----------AGSRALHGDVAQAQREVIL 408 Query 425 QKFQDGTLNLLVATSVAEEGLDIPHCNVVVR 455 F+ G +LVAT+VA GLDI ++++ Sbjct 409 AGFRSGKFLVLVATNVAARGLDINDVQLIIQ 439 >sp|A1CTZ6|DBP10_ASPCL ATP-dependent RNA helicase dbp10 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=dbp10 PE=3 SV=1 Length=935 Score = 37.4 bits (85), Expect = 0.62, Method: Compositional matrix adjust. Identities = 20/59 (34%), Positives = 31/59 (53%), Gaps = 1/59 (2%) Query 424 IQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF 481 +Q F+ G N+LV T VA G+DIP V+ Y + + GR ARA + +++ Sbjct 416 VQNFRSGLSNILVVTDVAARGIDIPILANVINYDFPSQPKIFIHRVGRTARAGRKGWSY 474 >sp|A0JWN0|UVRB_ARTS2 UvrABC system protein B OS=Arthrobacter sp. (strain FB24) OX=290399 GN=uvrB PE=3 SV=1 Length=693 Score = 37.0 bits (84), Expect = 0.62, Method: Compositional matrix adjust. Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 11/110 (10%) Query 370 GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKF 427 G I TRT ++ L+ L ++ D L+G G + H + + E++++ Sbjct 444 GEIKTRTAKNERVLVTTLTKRMAEDLTD----YLLGHGVKVEYLHSDVDTLRRVELLREL 499 Query 428 QDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 + G ++LV ++ EGLD+P ++V + G L + S++Q GRA Sbjct 500 RMGVFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSSTSLIQTIGRA 549 >sp|E1BNG3|ASCC3_BOVIN Activating signal cointegrator 1 complex subunit 3 OS=Bos taurus OX=9913 GN=ascc3 PE=3 SV=1 Length=2201 Score = 37.4 bits (85), Expect = 0.62, Method: Compositional matrix adjust. Identities = 36/155 (23%), Positives = 75/155 (48%), Gaps = 10/155 (6%) Query 19 NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRW--T 76 N+++ PTG+GKT AA R +K V + LV + ++++ ++ + Sbjct 1344 NVLLGAPTGSGKTVAAELAIFRVFNKYPTSKAVYIAPLKALVRERMDDWKVRIEEKLGKK 1403 Query 77 VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECH-- 134 V L+GD+ P +A+ DL++ T E S + +V+ +++++DE H Sbjct 1404 VIELTGDVTP--DMKSIAKA-DLIVTTPEKWDGVSRSWQNRNYVKQV--TILIIDEIHLL 1458 Query 135 HTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS 169 + V VI+S+ + +P+ +++GL+ + Sbjct 1459 GEERGPVLEVIVSRTNFISSHTEKPV-RIVGLSTA 1492 Score = 34.3 bits (77), Expect = 5.3, Method: Compositional matrix adjust. Identities = 43/175 (25%), Positives = 78/175 (45%), Gaps = 38/175 (22%) Query 17 GKNIIIWLPTGAGKTRAAAYVA----KRHLE----TVDGAKVVVLVNRVHLVTQHGEEFR 68 +N++I PTGAGKT A ++H + + K+V + L + F Sbjct 492 NENMLICAPTGAGKTNIAMLTVLHEIRQHFQQGVIKKNEFKIVYVAPMKALAAEMTNYFS 551 Query 69 RMLDGRWTVTT-LSGDMGPRAGFGHLARCHDLLICTAELL--QMALTSPEEEEHVELT-- 123 + L+ V L+GDM + E+L QM +T+PE+ + V Sbjct 552 KRLEPLGIVVKELTGDMQ---------------LSKNEILRTQMLVTTPEKWDVVTRKSV 596 Query 124 -------VFSLIVVDECHHTHKD--TVYNVIMSQYLELKLQRAQPLPQVLGLTAS 169 + L+++DE H H+D V I+++ L +++ Q + ++LGL+A+ Sbjct 597 GDVALSQIVKLLILDEVHLLHEDRGPVLESIVARTLR-QVESTQSMIRILGLSAT 650 >sp|B2VG58|RHLB_ERWT9 ATP-dependent RNA helicase RhlB OS=Erwinia tasmaniensis (strain DSM 17950 / CFBP 7177 / CIP 109463 / NCPPB 4357 / Et1/99) OX=465817 GN=rhlB PE=3 SV=1 Length=430 Score = 37.0 bits (84), Expect = 0.62, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 51/122 (42%), Gaps = 18/122 (15%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ +L+ +++ ++ R IIF T+ + W L R LL G Sbjct 243 KMRLLQTLIEEEWPD----RTIIFANTKHRCEDV--WGH----LAADGHRVGLLTG---- 288 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q+ + ++ F G +++LVAT VA GL IP V Y L + V Sbjct 289 ----DVAQKKRLRILDDFTKGDVDILVATDVAARGLHIPAVTHVFNYDLPDDREDYVHRI 344 Query 470 GR 471 GR Sbjct 345 GR 346 >sp|Q4I7F9|PRP28_GIBZE Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=PRP28 PE=3 SV=1 Length=721 Score = 37.0 bits (84), Expect = 0.64, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%) Query 416 TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA 474 TQ ++ + + G +LVAT +A G+D+P ++VV + + TN S GR RA Sbjct 596 TQEQREAALGSVRAGHTQVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIGRTGRA 655 Query 475 DQSVYAFV 482 +S A Sbjct 656 GKSGVAIT 663 >sp|E9PZJ8|ASCC3_MOUSE Activating signal cointegrator 1 complex subunit 3 OS=Mus musculus OX=10090 GN=Ascc3 PE=1 SV=1 Length=2198 Score = 37.4 bits (85), Expect = 0.64, Method: Compositional matrix adjust. Identities = 36/155 (23%), Positives = 75/155 (48%), Gaps = 10/155 (6%) Query 19 NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRW--T 76 N+++ PTG+GKT AA R +K V + LV + ++++ ++ + Sbjct 1345 NVLLGAPTGSGKTVAAELAIFRVFNKYPTSKAVYIAPLKALVRERMDDWKIRIEEKLGKK 1404 Query 77 VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECH-- 134 V L+GD+ P +A+ DL++ T E S + +V+ +++++DE H Sbjct 1405 VIELTGDVTP--DMKSIAKA-DLIVTTPEKWDGVSRSWQNRSYVQQV--NILIIDEIHLL 1459 Query 135 HTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS 169 + V VI+S+ + +P+ +++GL+ + Sbjct 1460 GEERGPVLEVIVSRTNFISSHTEKPV-RIVGLSTA 1493 Score = 34.7 bits (78), Expect = 4.4, Method: Compositional matrix adjust. Identities = 43/175 (25%), Positives = 78/175 (45%), Gaps = 38/175 (22%) Query 17 GKNIIIWLPTGAGKTRAAAYV----AKRHLE----TVDGAKVVVLVNRVHLVTQHGEEFR 68 +N++I PTGAGKT A ++H + K+V + L + F Sbjct 493 NENMLICAPTGAGKTNIAMLTILHEIRQHFHQGVIKKNEFKIVYVAPMKALAAEMTNYFS 552 Query 69 RMLDGRWTVTT-LSGDMGPRAGFGHLARCHDLLICTAELL--QMALTSPEEEEHVELT-- 123 + L+ V L+GDM + +E+L QM +T+PE+ + V Sbjct 553 KRLEPLGIVVKELTGDMQ---------------LSKSEILRTQMLVTTPEKWDVVTRKSV 597 Query 124 -------VFSLIVVDECHHTHKD--TVYNVIMSQYLELKLQRAQPLPQVLGLTAS 169 + L+++DE H H+D V I+++ L +++ Q + ++LGL+A+ Sbjct 598 GDVALSQIVKLLILDEVHLLHEDRGPVLESIVARTLR-QVESTQSMIRILGLSAT 651 >sp|Q4IJH1|DBP3_GIBZE ATP-dependent RNA helicase DBP3 OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=DBP3 PE=3 SV=1 Length=581 Score = 37.0 bits (84), Expect = 0.65, Method: Compositional matrix adjust. Identities = 33/146 (23%), Positives = 63/146 (43%), Gaps = 18/146 (12%) Query 346 PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 P + +LE + + Q S + R ++F ++ A + +L ++ G++ I L Sbjct 396 PRGKEFRLLEVLKEHQQGSKKNDRILVFCLYKKEATRIENFLSRK-GIRVGGIHGDL--- 451 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNE 462 Q + ++ F+ G +LVAT VA GLDIP +V+ + + Sbjct 452 ----------RQEQRTRSLEAFKSGQTPVLVATDVAARGLDIPEVKLVINVTFPLTIEDY 501 Query 463 ISMVQARGRA-RADQSVYAFVATEGS 487 + + GRA + Q++ F + S Sbjct 502 VHRIGRTGRAGKTGQAITFFTVEDKS 527 >sp|Q10055|FAL1_SCHPO ATP-dependent RNA helicase fal1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=tif412 PE=1 SV=1 Length=394 Score = 37.0 bits (84), Expect = 0.65, Method: Compositional matrix adjust. Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 0/64 (0%) Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 +S M Q+++ ++Q F+ G +L+ T + G+D+ ++V+ Y L N + + Sbjct 288 TSMHGEMPQKERDAIMQDFRQGNSRVLICTDIWARGIDVQQVSLVINYDLPANRENYIHR 347 Query 469 RGRA 472 GR+ Sbjct 348 IGRS 351 >sp|P05470|YKP4_KLULA Uncharacterized killer plasmid pGKL-2 helicase OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 PE=3 SV=1 Length=597 Score = 37.0 bits (84), Expect = 0.65, Method: Compositional matrix adjust. Identities = 38/164 (23%), Positives = 76/164 (46%), Gaps = 29/164 (18%) Query 20 IIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRR-MLDGRWTVT 78 +I+ G GKT AAA +A +L++ G KV+ L N ++ + E+ + +LD R + Sbjct 57 LIVCYDVGLGKTYAAACLAHMYLDS--GFKVLYLSNSLNSIDNFSNEYEKVVLDSR--LN 112 Query 79 TLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHTHK 138 +L ++ ++ F C E ++V+ + LI++DE H+ + Sbjct 113 SLKKNITIKS-FSKFYNCE---------------KRGESDNVD---YGLIILDEVHNL-R 152 Query 139 DTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAI 182 ++ Y + ++ KL ++L +TA+P +LD + Sbjct 153 ESAYRY---KLIKNKLDTMNN-SKILVITATPMIDSKDELDSIL 192 >sp|Q54TF8|DDX19_DICDI ATP-dependent RNA helicase ddx19 OS=Dictyostelium discoideum OX=44689 GN=helC PE=2 SV=1 Length=465 Score = 37.0 bits (84), Expect = 0.65, Method: Compositional matrix adjust. Identities = 15/49 (31%), Positives = 31/49 (63%), Gaps = 0/49 (0%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI 463 +T ++ + I+ F+DG +L+ T+V G+DIP ++V+ Y + +E+ Sbjct 342 LTTEERFKQIKDFKDGKSKVLITTNVLARGIDIPQVSLVINYDVPLDEM 390 >sp|Q7RYZ7|DBP8_NEUCR ATP-dependent RNA helicase dbp-8 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=dbp-8 PE=3 SV=1 Length=626 Score = 37.0 bits (84), Expect = 0.66, Method: Compositional matrix adjust. Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 +S + + Q + + + +F+ +LVAT VA GLDIP +V+ Y + + + Sbjct 478 TSLHSKLPQSQRIDNLGRFRASAARILVATDVAARGLDIPEVKIVINYDIPRDPDDYIHR 537 Query 469 RGR-ARA 474 GR ARA Sbjct 538 VGRTARA 544 >sp|Q6F9D2|UVRB_ACIAD UvrABC system protein B OS=Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1) OX=62977 GN=uvrB PE=3 SV=1 Length=675 Score = 37.0 bits (84), Expect = 0.66, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++I + + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 490 KIIHELRTGVYDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 545 >sp|P73421|RECQ_SYNY3 ATP-dependent DNA helicase RecQ OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa) OX=1111708 GN=recQ PE=3 SV=1 Length=478 Score = 37.0 bits (84), Expect = 0.67, Method: Compositional matrix adjust. Identities = 46/207 (22%), Positives = 85/207 (41%), Gaps = 40/207 (19%) Query 346 PENPKLEMLEKILQRQFSSSNSPR----------GIIFTRTRQSAHSLLLWLQQQQGLQT 395 P P+L + K++ ++ R G+I+ RTR A +L WLQ++ Sbjct 208 PHRPQLHLKVKMVLSEYCRRQQLRRFLLKHLQESGLIYVRTRTMAINLAQWLQER----- 262 Query 396 VDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV 453 G S++ H + ++++ QK+ G ++ +V T+ G+D P V Sbjct 263 -----------GFDSEAYHGGLGPHQRRQLEQKWLTGQISSVVCTNAFGLGIDKPDTRWV 311 Query 454 VRYGLLTNEISMVQARGRARAD---QSVYAFVA------TEGSRELKRELINEALETLME 504 + Y + +Q GRA D V+ G R+L++ +++A + L Sbjct 312 LHYQAPLMLMDYLQEVGRAGRDLQPAECLTLVSEPTGWLDSGDRQLRQYFLSQASKYLQR 371 Query 505 QAVAAVQKMDQ---AEYQAKIRDLQQA 528 V + Q Q + +A DL+ A Sbjct 372 AEVLSQQIPSQGNLGQLKAHFPDLEMA 398 >sp|Q2UHC1|DBP10_ASPOR ATP-dependent RNA helicase dbp10 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=dbp10 PE=3 SV=1 Length=929 Score = 37.0 bits (84), Expect = 0.67, Method: Compositional matrix adjust. Identities = 21/59 (36%), Positives = 31/59 (53%), Gaps = 1/59 (2%) Query 424 IQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF 481 +Q F+ G N+LV T VA G+DIP V+ Y + V GR ARA + +++ Sbjct 415 VQNFRAGLSNILVVTDVAARGIDIPILANVINYDFPSQPKIFVHRVGRTARAGRKGWSY 473 >sp|Q8PFZ3|RHLB_XANAC ATP-dependent RNA helicase RhlB OS=Xanthomonas axonopodis pv. citri (strain 306) OX=190486 GN=rhlB PE=3 SV=1 Length=571 Score = 37.0 bits (84), Expect = 0.68, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 0/60 (0%) Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 S + Q+ ++ ++ +FQ G L +LVAT VA GL I V Y L + V GR Sbjct 288 SGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGR 347 >sp|A3GHW9|ROK1_PICST ATP-dependent RNA helicase ROK1 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) OX=322104 GN=ROK1 PE=3 SV=1 Length=558 Score = 37.0 bits (84), Expect = 0.68, Method: Compositional matrix adjust. Identities = 20/70 (29%), Positives = 38/70 (54%), Gaps = 4/70 (6%) Query 416 TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR---- 471 T + ++EVI++F++G + +L+ T V G+D N+V+ Y + + V GR Sbjct 403 TPKQREEVIKRFKNGDIWVLITTDVLARGVDFKGVNMVINYDVPQTAQAYVHRIGRTGRG 462 Query 472 ARADQSVYAF 481 +A ++V F Sbjct 463 GKAGRAVTFF 472 >sp|P56996|UVRB_NEIMA UvrABC system protein B OS=Neisseria meningitidis serogroup A / serotype 4A (strain DSM 15465 / Z2491) OX=122587 GN=uvrB PE=3 SV=1 Length=675 Score = 37.0 bits (84), Expect = 0.68, Method: Compositional matrix adjust. Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 7/106 (7%) Query 372 IFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGT 431 I R ++ L+ L ++ Q D ++L I +R E+I+ + G Sbjct 444 INDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVER--VEIIRDLRLGL 501 Query 432 LNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++LV ++ EGLDIP ++V + G L + S++Q GRA Sbjct 502 FDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRA 547 >sp|O73946|HELS_PYRFU ATP-dependent DNA helicase Hel308 OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) OX=186497 GN=hel308 PE=1 SV=1 Length=720 Score = 37.0 bits (84), Expect = 0.69, Method: Compositional matrix adjust. Identities = 30/91 (33%), Positives = 45/91 (49%), Gaps = 4/91 (4%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGR 74 LEGKN +I +PT +GKT A +A H G K V +V L + +EF+ Sbjct 37 LEGKNALISIPTASGKTLIAE-IAMVHRILTQGGKAVYIVPLKALAEEKFQEFQDWEKIG 95 Query 75 WTVTTLSGDMGPRAGFGHLARCHDLLICTAE 105 V +GD + + L + +D++I TAE Sbjct 96 LRVAMATGDYDSKDEW--LGK-YDIIIATAE 123 >sp|Q5QXB8|UVRB_IDILO UvrABC system protein B OS=Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR) OX=283942 GN=uvrB PE=3 SV=1 Length=677 Score = 37.0 bits (84), Expect = 0.71, Method: Compositional matrix adjust. Identities = 18/59 (31%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+I+ + G ++LV ++ EGLD+P ++V + G L ++ S++Q GRA Sbjct 485 ERMEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRA 543 >sp|A7Z985|UVRB_BACVZ UvrABC system protein B OS=Bacillus velezensis (strain DSM 23117 / BGSC 10A6 / LMG 26770 / FZB42) OX=326423 GN=uvrB PE=3 SV=1 Length=661 Score = 37.0 bits (84), Expect = 0.71, Method: Compositional matrix adjust. Identities = 19/56 (34%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + G ++L+ ++ EGLDIP ++V + G L +E S++Q GRA Sbjct 486 EIIRDLRLGKHDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA 541 >sp|P39517|DHH1_YEAST ATP-dependent RNA helicase DHH1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DHH1 PE=1 SV=1 Length=506 Score = 37.0 bits (84), Expect = 0.71, Method: Compositional matrix adjust. Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 11/111 (10%) Query 373 FTRTRQSAH---SLLLWLQQQQGL------QTVDIRAQLLIGAGNSSQSTH--MTQRDQQ 421 F RQ H +L LQ Q + V++ A+ + G S +H M Q+++ Sbjct 264 FVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERN 323 Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA 472 +V +F+ G + LV + + G+DI NVV+ + + + GR+ Sbjct 324 KVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRS 374 >sp|A6ZXG9|DHH1_YEAS7 ATP-dependent RNA helicase DHH1 OS=Saccharomyces cerevisiae (strain YJM789) OX=307796 GN=DHH1 PE=3 SV=1 Length=506 Score = 37.0 bits (84), Expect = 0.71, Method: Compositional matrix adjust. Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 11/111 (10%) Query 373 FTRTRQSAH---SLLLWLQQQQGL------QTVDIRAQLLIGAGNSSQSTH--MTQRDQQ 421 F RQ H +L LQ Q + V++ A+ + G S +H M Q+++ Sbjct 264 FVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERN 323 Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA 472 +V +F+ G + LV + + G+DI NVV+ + + + GR+ Sbjct 324 KVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRS 374 >sp|Q3BNH8|RHLB_XANE5 ATP-dependent RNA helicase RhlB OS=Xanthomonas euvesicatoria pv. vesicatoria (strain 85-10) OX=316273 GN=rhlB PE=3 SV=1 Length=573 Score = 37.0 bits (84), Expect = 0.71, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 0/60 (0%) Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 S + Q+ ++ ++ +FQ G L +LVAT VA GL I V Y L + V GR Sbjct 288 SGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGR 347 >sp|Q6AF52|UVRB_LEIXX UvrABC system protein B OS=Leifsonia xyli subsp. xyli (strain CTCB07) OX=281090 GN=uvrB PE=3 SV=1 Length=688 Score = 37.0 bits (84), Expect = 0.72, Method: Compositional matrix adjust. Identities = 22/77 (29%), Positives = 42/77 (55%), Gaps = 9/77 (12%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRARADQ 476 E++ + + G ++LV ++ EGLD+P ++V + G L + S++Q GRA + Sbjct 490 ELLTELRSGVFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSTSLIQTIGRAARNV 549 Query 477 S----VYAFVATEGSRE 489 S +YA V T+ ++ Sbjct 550 SGEVHMYADVLTDSMKK 566 >sp|A8F8W9|UVRB_PSELT UvrABC system protein B OS=Pseudothermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / NBRC 107922 / TMO) OX=416591 GN=uvrB PE=3 SV=1 Length=656 Score = 37.0 bits (84), Expect = 0.72, Method: Compositional matrix adjust. Identities = 26/109 (24%), Positives = 56/109 (51%), Gaps = 19/109 (17%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 R +I T+++A L +L + G++++ I ++L ++ EV++K + Sbjct 443 RALITVLTKKTAEKLSEYLVEM-GIKSLYIHSEL-------------DAIERIEVLKKLR 488 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 G ++ +V ++ EGLD+P ++V + G L +E +++Q GR Sbjct 489 RGDVDAVVGINLLREGLDLPEVSLVAILDSDKEGFLRSETTLIQIIGRV 537 >sp|F1LPQ2|ASCC3_RAT Activating signal cointegrator 1 complex subunit 3 OS=Rattus norvegicus OX=10116 GN=Ascc3 PE=3 SV=1 Length=2197 Score = 37.0 bits (84), Expect = 0.72, Method: Compositional matrix adjust. Identities = 36/155 (23%), Positives = 75/155 (48%), Gaps = 10/155 (6%) Query 19 NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRW--T 76 N+++ PTG+GKT AA R +K V + LV + ++++ ++ + Sbjct 1345 NVLLGAPTGSGKTVAAELAIFRVFNKYPTSKAVYIAPLKALVRERMDDWKIRIEEKLGKK 1404 Query 77 VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECH-- 134 V L+GD+ P +A+ DL++ T E S + +V+ +++++DE H Sbjct 1405 VIELTGDVTP--DMKSIAKA-DLIVTTPEKWDGVSRSWQNRSYVQQV--NILIIDEIHLL 1459 Query 135 HTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS 169 + V VI+S+ + +P+ +++GL+ + Sbjct 1460 GEERGPVLEVIVSRTNFISSHTEKPV-RIVGLSTA 1493 Score = 34.7 bits (78), Expect = 3.6, Method: Compositional matrix adjust. Identities = 44/175 (25%), Positives = 80/175 (46%), Gaps = 38/175 (22%) Query 17 GKNIIIWLPTGAGKTRAAAYVA----KRHLE----TVDGAKVVVLVNRVHLVTQHGEEFR 68 +N++I PTGAGKT A ++H + K+V + L + F Sbjct 493 NENMLICAPTGAGKTNIAMLTVLHEIRQHFHQGVLKKNEFKIVYVAPMKALAAEMTNYFS 552 Query 69 RMLDGRWTVTT-LSGDMGPRAGFGHLARCHDLLICTAELL--QMALTSPEEEE------- 118 + L+ V L+GDM + +E+L QM +T+PE+ + Sbjct 553 KRLEPLGIVVKELTGDMQ---------------LSKSEILRTQMLVTTPEKWDVVTRKSV 597 Query 119 -HVELT-VFSLIVVDECHHTHKD--TVYNVIMSQYLELKLQRAQPLPQVLGLTAS 169 V L+ + L+++DE H H+D V I+++ L +++ Q + ++LGL+A+ Sbjct 598 GDVALSQIVKLLILDEVHLLHEDRGPVLESIVARTLR-QVESTQSMIRILGLSAT 651 >sp|O13983|HRQ1_SCHPO ATP-dependent helicase hrq1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=hrq1 PE=1 SV=4 Length=1063 Score = 37.0 bits (84), Expect = 0.73, Method: Compositional matrix adjust. Identities = 30/119 (25%), Positives = 61/119 (51%), Gaps = 8/119 (7%) Query 369 RGIIFTRTRQSAHSLLLWLQQQ-QGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF 427 R I+F R R++ SL+ ++Q+ + Q D+ +++ S T ++++++ + Sbjct 553 RTIVFCRVRKTCESLMRLVRQELKTKQKGDLLSKI------QSYRAGYTVQERRKIESEM 606 Query 428 QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA-RADQSVYAFVATE 485 +G L ++AT+ E G+DI + V+ G + ++ Q GRA R ++S A E Sbjct 607 FNGKLYGIIATNALELGIDIGSLDAVITIGFPYSLSNLRQQFGRAGRRNKSSLAVYIVE 665 >sp|Q50939|UVRB_NEIGO UvrABC system protein B OS=Neisseria gonorrhoeae OX=485 GN=uvrB PE=3 SV=1 Length=675 Score = 37.0 bits (84), Expect = 0.73, Method: Compositional matrix adjust. Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 7/106 (7%) Query 372 IFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGT 431 I R ++ L+ L ++ Q D ++L I +R E+I+ + G Sbjct 444 INDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVER--VEIIRDLRLGL 501 Query 432 LNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++LV ++ EGLDIP ++V + G L + S++Q GRA Sbjct 502 FDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRA 547 >sp|Q56243|UVRB_THET8 UvrABC system protein B OS=Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8) OX=300852 GN=uvrB PE=1 SV=2 Length=665 Score = 37.0 bits (84), Expect = 0.75, Method: Compositional matrix adjust. Identities = 35/131 (27%), Positives = 62/131 (47%), Gaps = 22/131 (17%) Query 347 ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA 406 EN L+++E I +R ++ R ++ T + A L +L + IRA+ L Sbjct 423 ENQILDLMEGIRER---AARGERTLVTVLTVRMAEELTSFLVEH------GIRARYL--- 470 Query 407 GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTN 461 + ++Q +I+ + G + LV ++ EGLDIP ++V + G L + Sbjct 471 -----HHELDAFERQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRS 525 Query 462 EISMVQARGRA 472 E S++Q GRA Sbjct 526 ERSLIQTIGRA 536 >sp|Q5F931|UVRB_NEIG1 UvrABC system protein B OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) OX=242231 GN=uvrB PE=3 SV=1 Length=675 Score = 37.0 bits (84), Expect = 0.76, Method: Compositional matrix adjust. Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 7/106 (7%) Query 372 IFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGT 431 I R ++ L+ L ++ Q D ++L I +R E+I+ + G Sbjct 444 INDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVER--VEIIRDLRLGL 501 Query 432 LNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++LV ++ EGLDIP ++V + G L + S++Q GRA Sbjct 502 FDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRA 547 >sp|Q9PER1|UVRB_XYLFA UvrABC system protein B OS=Xylella fastidiosa (strain 9a5c) OX=160492 GN=uvrB PE=3 SV=1 Length=669 Score = 37.0 bits (84), Expect = 0.77, Method: Compositional matrix adjust. Identities = 28/109 (26%), Positives = 54/109 (50%), Gaps = 19/109 (17%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 R ++ T T++ A +L +L +Q IR + L + + ++ E+I+ + Sbjct 448 RVLVTTLTKRMAENLTEYLSEQ------GIRIRYL--------HSEIDTVERVEIIRDLR 493 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 G ++LV ++ EGLD+P ++V + G L + S++Q GRA Sbjct 494 LGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTSSLIQTIGRA 542 >sp|Q75BS4|DHH1_EREGS ATP-dependent RNA helicase DHH1 OS=Eremothecium gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=DHH1 PE=3 SV=1 Length=484 Score = 36.6 bits (83), Expect = 0.78, Method: Compositional matrix adjust. Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 11/111 (10%) Query 373 FTRTRQSAH---SLLLWLQQQQGL------QTVDIRAQLLIGAGNSSQSTH--MTQRDQQ 421 F RQ H +L LQ Q + V++ A+ + G S +H M Q+++ Sbjct 247 FVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERN 306 Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA 472 +V +F+ G + LV + + G+DI NVV+ + + + GR+ Sbjct 307 KVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRS 357 >sp|Q87AT6|UVRB_XYLFT UvrABC system protein B OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) OX=183190 GN=uvrB PE=3 SV=1 Length=669 Score = 36.6 bits (83), Expect = 0.79, Method: Compositional matrix adjust. Identities = 28/109 (26%), Positives = 54/109 (50%), Gaps = 19/109 (17%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 R ++ T T++ A +L +L +Q IR + L + + ++ E+I+ + Sbjct 448 RVLVTTLTKRMAENLTEYLSEQ------GIRIRYL--------HSEIDTVERVEIIRDLR 493 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 G ++LV ++ EGLD+P ++V + G L + S++Q GRA Sbjct 494 LGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTSSLIQTIGRA 542 >sp|B2I8F9|UVRB_XYLF2 UvrABC system protein B OS=Xylella fastidiosa (strain M23) OX=405441 GN=uvrB PE=3 SV=1 Length=669 Score = 36.6 bits (83), Expect = 0.79, Method: Compositional matrix adjust. Identities = 28/109 (26%), Positives = 54/109 (50%), Gaps = 19/109 (17%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 R ++ T T++ A +L +L +Q IR + L + + ++ E+I+ + Sbjct 448 RVLVTTLTKRMAENLTEYLSEQ------GIRIRYL--------HSEIDTVERVEIIRDLR 493 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 G ++LV ++ EGLD+P ++V + G L + S++Q GRA Sbjct 494 LGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTSSLIQTIGRA 542 >sp|Q5GUR8|RHLB_XANOR ATP-dependent RNA helicase RhlB OS=Xanthomonas oryzae pv. oryzae (strain KACC10331 / KXO85) OX=291331 GN=rhlB PE=3 SV=2 Length=574 Score = 36.6 bits (83), Expect = 0.79, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 0/60 (0%) Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 S + Q+ ++ ++ +FQ G L +LVAT VA GL I V Y L + V GR Sbjct 288 SGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGR 347 >sp|B0U4J3|UVRB_XYLFM UvrABC system protein B OS=Xylella fastidiosa (strain M12) OX=405440 GN=uvrB PE=3 SV=1 Length=669 Score = 36.6 bits (83), Expect = 0.80, Method: Compositional matrix adjust. Identities = 28/109 (26%), Positives = 54/109 (50%), Gaps = 19/109 (17%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 R ++ T T++ A +L +L +Q IR + L + + ++ E+I+ + Sbjct 448 RVLVTTLTKRMAENLTEYLSEQ------GIRIRYL--------HSEIDTVERVEIIRDLR 493 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 G ++LV ++ EGLD+P ++V + G L + S++Q GRA Sbjct 494 LGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTSSLIQTIGRA 542 >sp|Q6A9K7|UVRB_CUTAK UvrABC system protein B OS=Cutibacterium acnes (strain DSM 16379 / KPA171202) OX=267747 GN=uvrB PE=3 SV=1 Length=701 Score = 36.6 bits (83), Expect = 0.83, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 34/56 (61%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E++++ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 494 ELLKELRMGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTVGRA 549 >sp|Q47QN5|UVRB_THEFY UvrABC system protein B OS=Thermobifida fusca (strain YX) OX=269800 GN=uvrB PE=3 SV=1 Length=701 Score = 36.6 bits (83), Expect = 0.84, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 34/56 (61%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E++++ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 495 ELLRELRVGVFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRA 550 >sp|Q2NGT1|UVRB_METST UvrABC system protein B OS=Methanosphaera stadtmanae (strain ATCC 43021 / DSM 3091 / JCM 11832 / MCB-3) OX=339860 GN=uvrB PE=3 SV=1 Length=649 Score = 36.6 bits (83), Expect = 0.86, Method: Compositional matrix adjust. Identities = 18/65 (28%), Positives = 36/65 (55%), Gaps = 5/65 (8%) Query 413 THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQ 467 + ++ ++ E+I + + G + LV ++ EGLD+P +V + G L ++ S++Q Sbjct 475 SEISTLERTEIIDELRRGDFDCLVGVNLLREGLDLPEVALVAILDADKEGFLRSQTSLIQ 534 Query 468 ARGRA 472 GRA Sbjct 535 TIGRA 539 >sp|Q8P4D4|RHLB_XANCP ATP-dependent RNA helicase RhlB OS=Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25) OX=190485 GN=rhlB PE=3 SV=1 Length=573 Score = 36.6 bits (83), Expect = 0.86, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 0/60 (0%) Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 S + Q+ ++ ++ +FQ G L +LVAT VA GL I V Y L + V GR Sbjct 288 SGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGR 347 >sp|B0RWT6|RHLB_XANCB ATP-dependent RNA helicase RhlB OS=Xanthomonas campestris pv. campestris (strain B100) OX=509169 GN=rhlB PE=3 SV=1 Length=573 Score = 36.6 bits (83), Expect = 0.86, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 0/60 (0%) Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 S + Q+ ++ ++ +FQ G L +LVAT VA GL I V Y L + V GR Sbjct 288 SGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGR 347 >sp|Q4UPY5|RHLB_XANC8 ATP-dependent RNA helicase RhlB OS=Xanthomonas campestris pv. campestris (strain 8004) OX=314565 GN=rhlB PE=3 SV=1 Length=573 Score = 36.6 bits (83), Expect = 0.86, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 0/60 (0%) Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 S + Q+ ++ ++ +FQ G L +LVAT VA GL I V Y L + V GR Sbjct 288 SGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGR 347 >sp|Q3ATT8|UVRB_CHLCH UvrABC system protein B OS=Chlorobium chlorochromatii (strain CaD3) OX=340177 GN=uvrB PE=3 SV=1 Length=681 Score = 36.6 bits (83), Expect = 0.87, Method: Compositional matrix adjust. Identities = 32/143 (22%), Positives = 76/143 (53%), Gaps = 20/143 (14%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRAR 473 ++ +++++ + G +++LV ++ EGLD+P ++V + G L N S++Q GRA Sbjct 488 ERMQILRELRAGDIDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNTRSLMQIAGRAA 547 Query 474 ADQSVYAFVATEGSRELKRELINEALETLMEQAV--AAVQKMDQAEY----QAKIRDLQQ 527 +++ FV L ++I +++ ++++ A+Q+ E+ ++ ++ + Q Sbjct 548 --RNLDGFVV------LYADVITRSIQEVLDETARRRAIQQRYNEEHGITPRSIVKSVDQ 599 Query 528 AALTKRAAQAAQRENQRQQFPVE 550 T A A +R +R++F +E Sbjct 600 ILDTTGVADAEER-YRRRRFGLE 621 >sp|Q928A4|UVRB_LISIN UvrABC system protein B OS=Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262) OX=272626 GN=uvrB PE=3 SV=1 Length=658 Score = 36.6 bits (83), Expect = 0.88, Method: Compositional matrix adjust. Identities = 21/76 (28%), Positives = 42/76 (55%), Gaps = 9/76 (12%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRARADQ 476 E+I+ + G +++V ++ EG+D+P ++V + G L +E S++Q GRA ++ Sbjct 486 EIIRDLRLGVYDVIVGINLLREGIDLPEVSLVAILDADKEGFLRSERSLIQTMGRAARNE 545 Query 477 S----VYAFVATEGSR 488 + +YA T+ R Sbjct 546 NGRVIMYADKMTDSMR 561 >sp|Q67T57|UVRB_SYMTH UvrABC system protein B OS=Symbiobacterium thermophilum (strain DSM 24528 / JCM 14929 / IAM 14863 / T) OX=292459 GN=uvrB PE=3 SV=1 Length=659 Score = 36.6 bits (83), Expect = 0.88, Method: Compositional matrix adjust. Identities = 18/59 (31%), Positives = 34/59 (58%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ ++++ + G ++LV ++ EGLDIP ++V + G L E S++Q GRA Sbjct 484 ERMQIVRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRA 542 >sp|Q8Y4F5|UVRB_LISMO UvrABC system protein B OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) OX=169963 GN=uvrB PE=3 SV=1 Length=658 Score = 36.6 bits (83), Expect = 0.90, Method: Compositional matrix adjust. Identities = 21/76 (28%), Positives = 42/76 (55%), Gaps = 9/76 (12%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRARADQ 476 E+I+ + G +++V ++ EG+D+P ++V + G L +E S++Q GRA ++ Sbjct 486 EIIRDLRLGVYDVIVGINLLREGIDLPEVSLVAILDADKEGFLRSERSLIQTMGRAARNE 545 Query 477 S----VYAFVATEGSR 488 + +YA T+ R Sbjct 546 NGRVIMYADKMTDSMR 561 >sp|Q8SR01|DBP4_ENCCU ATP-dependent RNA helicase DBP4 OS=Encephalitozoon cuniculi (strain GB-M1) OX=284813 GN=DBP4 PE=3 SV=2 Length=449 Score = 36.6 bits (83), Expect = 0.90, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 54/126 (43%), Gaps = 22/126 (17%) Query 362 FSSSNSP-RGIIFTRTRQSA--HSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQR 418 F SN +GI+F T + H LL + + +R ++ +G M+Q+ Sbjct 235 FIGSNPEVKGIVFFSTCKEVKFHCLLF--------ERLKLRNRIFCLSGG------MSQK 280 Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA-----R 473 + +V ++F +L T + GLD P +VV++Y N + V GR R Sbjct 281 QRIDVFKRFVKEKNGILFCTDLGSRGLDFPKVDVVIQYDCPCNVETYVHRVGRTARNSER 340 Query 474 ADQSVY 479 + VY Sbjct 341 GESYVY 346 >sp|Q71WT9|UVRB_LISMF UvrABC system protein B OS=Listeria monocytogenes serotype 4b (strain F2365) OX=265669 GN=uvrB PE=3 SV=1 Length=658 Score = 36.6 bits (83), Expect = 0.91, Method: Compositional matrix adjust. Identities = 21/76 (28%), Positives = 42/76 (55%), Gaps = 9/76 (12%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRARADQ 476 E+I+ + G +++V ++ EG+D+P ++V + G L +E S++Q GRA ++ Sbjct 486 EIIRDLRLGVYDVIVGINLLREGIDLPEVSLVAILDADKEGFLRSERSLIQTMGRAARNE 545 Query 477 S----VYAFVATEGSR 488 + +YA T+ R Sbjct 546 NGRVIMYADKMTDSMR 561 >sp|Q4HVW2|SPB4_GIBZE ATP-dependent rRNA helicase SPB4 OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=SPB4 PE=3 SV=1 Length=637 Score = 36.6 bits (83), Expect = 0.91, Method: Compositional matrix adjust. Identities = 28/97 (29%), Positives = 43/97 (44%), Gaps = 4/97 (4%) Query 433 NLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA-RADQSVYAFVATEGSRELK 491 +L+ T +A GLDIP ++VV+ ++ + GRA RA + A V RE Sbjct 351 TILLTTDLAARGLDIPQVDLVVQIDAPSDPKVFIHRSGRAGRAGRKGLAVVMLHPGREED 410 Query 492 RELINEALET---LMEQAVAAVQKMDQAEYQAKIRDL 525 E +T +E+ + D AE+ K RD Sbjct 411 YVQFLEIRKTPIAPLEKPTITTSEDDAAEFAKKTRDF 447 >sp|Q58524|HELS_METJA ATP-dependent DNA helicase Hel308 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=hel308 PE=3 SV=1 Length=1195 Score = 36.6 bits (83), Expect = 0.91, Method: Compositional matrix adjust. Identities = 50/181 (28%), Positives = 81/181 (45%), Gaps = 23/181 (13%) Query 1 MELRSYQWEVIMPAL--EGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG------AKVVV 52 +ELR Q + + L + KN +I +PT +GKT HL +DG K + Sbjct 14 VELRPPQKKALERGLLDKNKNFLISIPTASGKTLIGEMALINHL--LDGNKNPTNKKGIF 71 Query 53 LVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALT 112 +V L ++ EEF+ + LS +G L++ H L+I TAE L Sbjct 72 IVPLKALASEKYEEFKSKYERYGLRIALS--IGDYDEDEDLSKYH-LIITTAE----KLD 124 Query 113 SPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLP-QVLGLTASPG 171 S + + S++VVDE H + +T LE+ L + + Q++GL+A+ G Sbjct 125 SLWRHKIDWINDVSVVVVDEIHLINDET-----RGGTLEILLTKLKEFNVQIIGLSATIG 179 Query 172 T 172 Sbjct 180 N 180 >sp|Q6FQQ6|IF4A_CANGA ATP-dependent RNA helicase eIF4A OS=Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=TIF1 PE=3 SV=1 Length=396 Score = 36.2 bits (82), Expect = 0.92, Method: Compositional matrix adjust. Identities = 14/54 (26%), Positives = 35/54 (65%), Gaps = 0/54 (0%) Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE 462 SS + + Q+++ ++++F+ G+ +L++T + G+D+ ++V+ Y L TN+ Sbjct 289 SSIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPTNK 342 >sp|O33395|UVRB_NEIMB UvrABC system protein B OS=Neisseria meningitidis serogroup B (strain ATCC BAA-335 / MC58) OX=122586 GN=uvrB PE=3 SV=3 Length=675 Score = 36.6 bits (83), Expect = 0.92, Method: Compositional matrix adjust. Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 7/106 (7%) Query 372 IFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGT 431 I R + L+ L ++ Q D ++L I +R E+I+ + G Sbjct 444 INDRIEKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVER--VEIIRDLRLGL 501 Query 432 LNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++LV ++ EGLDIP ++V + G L + S++Q GRA Sbjct 502 FDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRA 547 >sp|Q2NJ77|UVRB_AYWBP UvrABC system protein B OS=Aster yellows witches'-broom phytoplasma (strain AYWB) OX=322098 GN=uvrB PE=3 SV=1 Length=667 Score = 36.6 bits (83), Expect = 0.94, Method: Compositional matrix adjust. Identities = 19/56 (34%), Positives = 31/56 (55%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+++ + G + LV ++ EGLD+P +V + G L NE S++Q GRA Sbjct 488 EILKDLRLGKYDCLVGVNLLREGLDLPEVALVAILDADKQGFLRNERSLIQTIGRA 543 >sp|Q971U1|XPB1_SULTO DNA 3'-5' helicase/translocase StoXPB1 OS=Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) OX=273063 GN=xpb1 PE=1 SV=1 Length=543 Score = 36.6 bits (83), Expect = 0.95, Method: Compositional matrix adjust. Identities = 44/170 (26%), Positives = 72/170 (42%), Gaps = 32/170 (19%) Query 2 ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVT 61 ELR YQ E + L+ + +I LPTGAGK TV G K++ V + L+ Sbjct 158 ELRDYQKEAVDTWLQRGSGVIALPTGAGK-------------TVIGIKIITEVRKSTLIV 204 Query 62 QHGEEFRRMLDGRWTVTTLSGDMGPRAGFG-HLARCHDLLICTAELLQMALTSPEEEEHV 120 ++ +ML +W L R+ G + + ++ T A +E Sbjct 205 TFTKD--QML--QWRDAILKFTDANRSDIGLYYSEEKNIRPITITTYHTAYRHIDELSG- 259 Query 121 ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASP 170 F L+++DE HH D ++ E+ L+ + LGL+A+P Sbjct 260 ---KFELLIIDEAHHLPAD--------RFKEIALKCIA--SKRLGLSATP 296 Score = 35.8 bits (81), Expect = 1.6, Method: Compositional matrix adjust. Identities = 27/103 (26%), Positives = 49/103 (48%), Gaps = 23/103 (22%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 KL+ L+ I+Q++ N + +IFT+ A + A L+ G N Sbjct 398 KLKALDDIIQKE----NGNKILIFTQYVDQAEEI-----------AKKYNAYLITGKTNK 442 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNV 452 ++ ++++++ F+ +LV T+V +EGLDIP NV Sbjct 443 NE--------REKILRIFKTLKSGILVLTTVGDEGLDIPDANV 477 >sp|Q0UG00|MS116_PHANO ATP-dependent RNA helicase MSS116, mitochondrial OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) OX=321614 GN=MSS116 PE=3 SV=1 Length=550 Score = 36.6 bits (83), Expect = 0.96, Method: Compositional matrix adjust. Identities = 20/65 (31%), Positives = 35/65 (54%), Gaps = 1/65 (2%) Query 413 THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR- 471 + M+Q + +F++ T +L A+ V G+D P+ +VV+ GL ++ V GR Sbjct 365 SRMSQPMRTRTTAQFKEATSGILFASDVVGRGMDFPNVGLVVQLGLPSSTEQYVHRVGRT 424 Query 472 ARADQ 476 ARA + Sbjct 425 ARAGK 429 >sp|Q6YQE1|UVRB_ONYPE UvrABC system protein B OS=Onion yellows phytoplasma (strain OY-M) OX=262768 GN=uvrB PE=3 SV=2 Length=670 Score = 36.6 bits (83), Expect = 0.96, Method: Compositional matrix adjust. Identities = 19/56 (34%), Positives = 31/56 (55%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+++ + G + LV ++ EGLD+P +V + G L NE S++Q GRA Sbjct 488 EILKDLRLGKYDCLVGVNLLREGLDLPEVALVAILDADKQGFLRNERSLIQTIGRA 543 >sp|Q3AFF4|UVRB_CARHZ UvrABC system protein B OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901) OX=246194 GN=uvrB PE=3 SV=1 Length=662 Score = 36.6 bits (83), Expect = 0.99, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+++ + G ++LV ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 485 EILRDLRLGVFDVLVGINLLREGLDLPEVSLVAILDADKEGYLRSERSLIQTIGRA 540 >sp|B7IEY7|UVRB_THEAB UvrABC system protein B OS=Thermosipho africanus (strain TCF52B) OX=484019 GN=uvrB PE=3 SV=1 Length=661 Score = 36.6 bits (83), Expect = 1.0, Method: Compositional matrix adjust. Identities = 23/86 (27%), Positives = 45/86 (52%), Gaps = 7/86 (8%) Query 394 QTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN 451 +T + A+ LI G + H + ++ EV++K + G + ++V ++ EGLD+P + Sbjct 452 KTAEKLAEYLIEMGIKALYIHSELDTIERVEVLKKLRRGDVEVVVGVNLLREGLDLPEVS 511 Query 452 VVV-----RYGLLTNEISMVQARGRA 472 +V G L +E +++Q GR Sbjct 512 LVAILDSDTEGFLRSETTLIQIIGRV 537 >sp|Q5Z6G5|RH35B_ORYSJ DEAD-box ATP-dependent RNA helicase 35B OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0697200 PE=3 SV=1 Length=619 Score = 36.2 bits (82), Expect = 1.0, Method: Compositional matrix adjust. Identities = 23/81 (28%), Positives = 41/81 (51%), Gaps = 5/81 (6%) Query 396 VDIRAQLLIGAGNSSQSTHMTQRDQQ--EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV 453 VD + L+ G + + H + D++ + + F+ ++LVAT VA +GLDIP V Sbjct 437 VDYIQEFLLLKGVEAVAIHGGKDDEERKDAFKSFKASEKDVLVATDVASKGLDIPDIQHV 496 Query 454 VRYGL---LTNEISMVQARGR 471 + Y + + N + + GR Sbjct 497 INYDMPAEIENYVHRIGRTGR 517 >sp|P60843|IF4A1_MOUSE Eukaryotic initiation factor 4A-I OS=Mus musculus OX=10090 GN=Eif4a1 PE=1 SV=1 Length=406 Score = 36.2 bits (82), Expect = 1.0, Method: Compositional matrix adjust. Identities = 20/93 (22%), Positives = 45/93 (48%), Gaps = 14/93 (15%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 + +IF TR+ WL ++ + + S+ M Q+++ ++++F+ Sbjct 274 QAVIFINTRRKVD----WLTEKMHARDFTV----------SAMHGDMDQKERDVIMREFR 319 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN 461 G+ +L+ T + G+D+ ++V+ Y L TN Sbjct 320 SGSSRVLITTDLLARGIDVQQVSLVINYDLPTN 352 >sp|P60842|IF4A1_HUMAN Eukaryotic initiation factor 4A-I OS=Homo sapiens OX=9606 GN=EIF4A1 PE=1 SV=1 Length=406 Score = 36.2 bits (82), Expect = 1.0, Method: Compositional matrix adjust. Identities = 20/93 (22%), Positives = 45/93 (48%), Gaps = 14/93 (15%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 + +IF TR+ WL ++ + + S+ M Q+++ ++++F+ Sbjct 274 QAVIFINTRRKVD----WLTEKMHARDFTV----------SAMHGDMDQKERDVIMREFR 319 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN 461 G+ +L+ T + G+D+ ++V+ Y L TN Sbjct 320 SGSSRVLITTDLLARGIDVQQVSLVINYDLPTN 352 >sp|Q3SZ54|IF4A1_BOVIN Eukaryotic initiation factor 4A-I OS=Bos taurus OX=9913 GN=EIF4A1 PE=2 SV=1 Length=406 Score = 36.2 bits (82), Expect = 1.0, Method: Compositional matrix adjust. Identities = 20/93 (22%), Positives = 45/93 (48%), Gaps = 14/93 (15%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 + +IF TR+ WL ++ + + S+ M Q+++ ++++F+ Sbjct 274 QAVIFINTRRKVD----WLTEKMHARDFTV----------SAMHGDMDQKERDVIMREFR 319 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN 461 G+ +L+ T + G+D+ ++V+ Y L TN Sbjct 320 SGSSRVLITTDLLARGIDVQQVSLVINYDLPTN 352 >sp|A5DLR3|DBP10_PICGU ATP-dependent RNA helicase DBP10 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DBP10 PE=3 SV=2 Length=914 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 6/106 (6%) Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT--QRDQQEVIQKFQDGTLNLLV 436 S HS ++++ + ++ V LL AG+ + T Q +++ + +F+ N+LV Sbjct 387 SEHSTIVFVPTKHHVEYV---TTLLRDAGHLVSYIYGTLDQHARKQQLYQFRAAYTNILV 443 Query 437 ATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF 481 T VA G+DIP VV Y L + + GR ARA +A+ Sbjct 444 VTDVAARGIDIPVLANVVNYTLPGSSKIFIHRVGRTARAGNKGWAY 489 >sp|P29562|IF4A1_RABIT Eukaryotic initiation factor 4A-I (Fragment) OS=Oryctolagus cuniculus OX=9986 GN=EIF4A1 PE=1 SV=2 Length=398 Score = 36.2 bits (82), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/93 (22%), Positives = 45/93 (48%), Gaps = 14/93 (15%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 + +IF TR+ WL ++ + + S+ M Q+++ ++++F+ Sbjct 266 QAVIFINTRRKVD----WLTEKMHARDFTV----------SAMHGDMDQKERDVIMREFR 311 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN 461 G+ +L+ T + G+D+ ++V+ Y L TN Sbjct 312 SGSSRVLITTDLLARGIDVQQVSLVINYDLPTN 344 >sp|A9B464|UVRB_HERA2 UvrABC system protein B OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785 / 114-95) OX=316274 GN=uvrB PE=3 SV=1 Length=698 Score = 36.2 bits (82), Expect = 1.1, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++++ + G ++LV ++ EGLD+P ++V + G L +E S+VQ GRA Sbjct 484 DILRDLRLGVFDVLVGINLLREGLDLPEVSLVAILDADKAGFLRSESSLVQIIGRA 539 >sp|A6UN73|HELS_METVS ATP-dependent DNA helicase Hel308 OS=Methanococcus vannielii (strain ATCC 35089 / DSM 1224 / JCM 13029 / OCM 148 / SB) OX=406327 GN=hel308 PE=3 SV=1 Length=751 Score = 36.2 bits (82), Expect = 1.1, Method: Compositional matrix adjust. Identities = 45/182 (25%), Positives = 80/182 (44%), Gaps = 27/182 (15%) Query 2 ELRSYQWEVIMPAL--EGKNIIIWLPTGAGKTRAAAYVAKRHL----ETVDGAKVVVLVN 55 ELR Q +VI L + KN +I +PT +GKT H+ + G K + +V Sbjct 15 ELRPPQKKVIEEGLLDKSKNFLICIPTASGKTLIGEMALLNHVLDENYNLTGKKGLFIVP 74 Query 56 RVHLVTQHGEEFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSP 114 L ++ +EF++ + +S GD + ++++I T+E L + Sbjct 75 LKALASEKFDEFQKKYETYGIKVGMSIGDYDTKEDLSK----YNIIITTSEKLDSLM--- 127 Query 115 EEEEHVE-LTVFSLIVVDECH---HTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASP 170 ++E + SL V+DE H + VI++ KL+ Q++GL+A+ Sbjct 128 --RHNIEWIKDLSLAVIDEIHLIGDNERGGTLEVILT-----KLKNIN--AQIVGLSATV 178 Query 171 GT 172 G Sbjct 179 GN 180 >sp|Q1EB38|DBP10_COCIM ATP-dependent RNA helicase DBP10 OS=Coccidioides immitis (strain RS) OX=246410 GN=DBP10 PE=3 SV=1 Length=927 Score = 36.2 bits (82), Expect = 1.1, Method: Compositional matrix adjust. Identities = 33/126 (26%), Positives = 59/126 (47%), Gaps = 10/126 (8%) Query 359 QRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MT 416 +R+ S N+P + + HS ++++ + VD A LL +G + + + Sbjct 345 KRKRSEQNNPN----PQESPTEHSTIIFVATKH---HVDYIASLLRESGFAVSYAYGSLD 397 Query 417 QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARAD 475 Q ++ + F+ G N+LV T VA G+DIP V+ Y + V GR ARA Sbjct 398 QTARKIQVSNFRTGISNILVVTDVAARGIDIPILENVINYDFPSQAKIFVHRVGRTARAG 457 Query 476 QSVYAF 481 + +++ Sbjct 458 RKGWSY 463 >sp|Q5R5F5|IF4A1_PONAB Eukaryotic initiation factor 4A-I OS=Pongo abelii OX=9601 GN=EIF4A1 PE=2 SV=1 Length=406 Score = 36.2 bits (82), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/93 (22%), Positives = 45/93 (48%), Gaps = 14/93 (15%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 + +IF TR+ WL ++ + + S+ M Q+++ ++++F+ Sbjct 274 QAVIFINTRRKVD----WLTEKMHARDFTV----------SAMHGDMDQKERDVIMREFR 319 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN 461 G+ +L+ T + G+D+ ++V+ Y L TN Sbjct 320 SGSSRVLITTDLLARGIDVQQVSLVINYDLPTN 352 >sp|A5A6N4|IF4A1_PANTR Eukaryotic initiation factor 4A-I OS=Pan troglodytes OX=9598 GN=EIF4A1 PE=2 SV=1 Length=406 Score = 36.2 bits (82), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/93 (22%), Positives = 45/93 (48%), Gaps = 14/93 (15%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 + +IF TR+ WL ++ + + S+ M Q+++ ++++F+ Sbjct 274 QAVIFINTRRKVD----WLTEKMHARDFTV----------SAMHGDMDQKERDVIMREFR 319 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN 461 G+ +L+ T + G+D+ ++V+ Y L TN Sbjct 320 SGSSRVLITTDLLARGIDVQQVSLVINYDLPTN 352 >sp|A1CFV3|DBP5_ASPCL ATP-dependent RNA helicase dbp5 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=dbp5 PE=3 SV=1 Length=487 Score = 36.2 bits (82), Expect = 1.1, Method: Compositional matrix adjust. Identities = 24/92 (26%), Positives = 44/92 (48%), Gaps = 22/92 (24%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQS----THMTQRDQQEVIQK 426 IIF +TR SA + + ++ G++ S +T+RD E+I K Sbjct 325 IIFVQTRTSASEI----------------EKRMVAEGHTVASLTGGIDVTKRD--EIIDK 366 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL 458 F+ G +L+ T+V G+D+ ++V+ Y + Sbjct 367 FRSGEAKVLITTNVLARGIDVSTVSMVINYDI 398 >sp|O74393|MAK5_SCHPO ATP-dependent RNA helicase mak5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mak5 PE=1 SV=1 Length=648 Score = 36.2 bits (82), Expect = 1.1, Method: Compositional matrix adjust. Identities = 23/77 (30%), Positives = 40/77 (52%), Gaps = 2/77 (3%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR 473 + Q+ + + ++KF++ +LV T VA G+DIP V+ Y + V GR AR Sbjct 423 LDQKKRLQSLEKFKNNPKGVLVCTDVAARGIDIPSVTHVIHYHVPHTADMYVHRSGRTAR 482 Query 474 ADQSVYAFVATEGSREL 490 A++ + + G +EL Sbjct 483 ANEDGVSILMC-GPKEL 498 >sp|Q6BP45|ROK1_DEBHA ATP-dependent RNA helicase ROK1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=ROK1 PE=3 SV=2 Length=550 Score = 36.2 bits (82), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 4/71 (6%) Query 416 TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR---- 471 T + + EVI++F+ G + +L+ T V G+D N+V+ Y + + + V GR Sbjct 396 TPKQRDEVIKRFKSGDIWVLITTDVIARGVDFKGVNLVINYDVPQSAQAYVHRIGRTGRG 455 Query 472 ARADQSVYAFV 482 +A ++V F Sbjct 456 GKAGKAVTFFT 466 >sp|Q8VDW0|DX39A_MOUSE ATP-dependent RNA helicase DDX39A OS=Mus musculus OX=10090 GN=Ddx39a PE=1 SV=1 Length=427 Score = 36.2 bits (82), Expect = 1.2, Method: Compositional matrix adjust. Identities = 22/75 (29%), Positives = 38/75 (51%), Gaps = 2/75 (3%) Query 400 AQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG 457 AQLL+ + + H M Q ++ Q+F+D +LVAT++ G+DI N+V Y Sbjct 303 AQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYD 362 Query 458 LLTNEISMVQARGRA 472 + + + + RA Sbjct 363 MPEDSDTYLHRVARA 377 >sp|Q10I26|IF43B_ORYSJ Eukaryotic initiation factor 4A-III homolog B OS=Oryza sativa subsp. japonica OX=39947 GN=EIF4A3B PE=1 SV=1 Length=404 Score = 35.8 bits (81), Expect = 1.2, Method: Compositional matrix adjust. Identities = 23/86 (27%), Positives = 39/86 (45%), Gaps = 3/86 (3%) Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE---ISM 465 S+ M Q+++ ++ +F+ G +L+ T V GLD+ ++V+ Y L N I Sbjct 298 SAMHGDMPQKERDAIMGEFRSGATRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHR 357 Query 466 VQARGRARADQSVYAFVATEGSRELK 491 + GR FV E R L+ Sbjct 358 IGRSGRFGRKGVAINFVKKEDIRILR 383 >sp|Q5VNM3|IF43A_ORYSJ Eukaryotic initiation factor 4A-III homolog A OS=Oryza sativa subsp. japonica OX=39947 GN=EIF4A3A PE=1 SV=1 Length=404 Score = 35.8 bits (81), Expect = 1.2, Method: Compositional matrix adjust. Identities = 23/86 (27%), Positives = 39/86 (45%), Gaps = 3/86 (3%) Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE---ISM 465 S+ M Q+++ ++ +F+ G +L+ T V GLD+ ++V+ Y L N I Sbjct 298 SAMHGDMPQKERDAIMGEFRSGATRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHR 357 Query 466 VQARGRARADQSVYAFVATEGSRELK 491 + GR FV E R L+ Sbjct 358 IGRSGRFGRKGVAINFVKKEDIRILR 383 >sp|Q5U216|DX39A_RAT ATP-dependent RNA helicase DDX39A OS=Rattus norvegicus OX=10116 GN=Ddx39a PE=2 SV=1 Length=427 Score = 36.2 bits (82), Expect = 1.2, Method: Compositional matrix adjust. Identities = 22/75 (29%), Positives = 38/75 (51%), Gaps = 2/75 (3%) Query 400 AQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG 457 AQLL+ + + H M Q ++ Q+F+D +LVAT++ G+DI N+V Y Sbjct 303 AQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYD 362 Query 458 LLTNEISMVQARGRA 472 + + + + RA Sbjct 363 MPEDSDTYLHRVARA 377 >sp|F1LNJ2|U520_RAT U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Rattus norvegicus OX=10116 GN=Snrnp200 PE=1 SV=1 Length=2139 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 61/148 (41%), Gaps = 16/148 (11%) Query 3 LRSYQWEVIMPALE-GKNIIIWLPTGAGKTRAAAYVAKRHLE---------TVDGAKVVV 52 L Q ++ ALE +N+++ PTGAGKT A R + VD K++ Sbjct 481 LNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIY 540 Query 53 LVNRVHLVTQHGEEF-RRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMAL 111 + LV + F +R+ TV L+GD +++CT E + Sbjct 541 IAPMRSLVQEMVGSFGKRLATYGITVAELTGD---HQLCKEEISATQIIVCTPEKWDIIT 597 Query 112 TSPEEEEHVELTVFSLIVVDECHHTHKD 139 E + +L LIV+DE H H D Sbjct 598 RKGGERTYTQLV--RLIVLDEIHLLHDD 623 >sp|P0CR06|DBP10_CRYNJ ATP-dependent RNA helicase DBP10 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=DBP10 PE=3 SV=1 Length=802 Score = 36.2 bits (82), Expect = 1.2, Method: Compositional matrix adjust. Identities = 34/126 (27%), Positives = 55/126 (44%), Gaps = 21/126 (17%) Query 365 SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ--STHMTQRDQQE 422 S++P+ I+F T+ VD A+LL G + + + Q +Q+ Sbjct 303 SSAPQAIVFVATKHH----------------VDYVAELLRTTGYRTSLIYSSLDQVARQQ 346 Query 423 VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQ--SVY 479 + F+ ++LV T VA GLDIP + V+ Y V GR ARA + + Y Sbjct 347 QLAGFRSHQSDVLVVTDVAARGLDIPIMDHVINYDFPAGPRIFVHRVGRTARAGRKGTAY 406 Query 480 AFVATE 485 + + E Sbjct 407 SLIVKE 412 >sp|P0CR07|DBP10_CRYNB ATP-dependent RNA helicase DBP10 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=DBP10 PE=3 SV=1 Length=802 Score = 36.2 bits (82), Expect = 1.2, Method: Compositional matrix adjust. Identities = 34/126 (27%), Positives = 55/126 (44%), Gaps = 21/126 (17%) Query 365 SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ--STHMTQRDQQE 422 S++P+ I+F T+ VD A+LL G + + + Q +Q+ Sbjct 303 SSAPQAIVFVATKHH----------------VDYVAELLRTTGYRTSLIYSSLDQVARQQ 346 Query 423 VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQ--SVY 479 + F+ ++LV T VA GLDIP + V+ Y V GR ARA + + Y Sbjct 347 QLAGFRSHQSDVLVVTDVAARGLDIPIMDHVINYDFPAGPRIFVHRVGRTARAGRKGTAY 406 Query 480 AFVATE 485 + + E Sbjct 407 SLIVKE 412 >sp|O00148|DX39A_HUMAN ATP-dependent RNA helicase DDX39A OS=Homo sapiens OX=9606 GN=DDX39A PE=1 SV=2 Length=427 Score = 35.8 bits (81), Expect = 1.2, Method: Compositional matrix adjust. Identities = 22/75 (29%), Positives = 38/75 (51%), Gaps = 2/75 (3%) Query 400 AQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG 457 AQLL+ + + H M Q ++ Q+F+D +LVAT++ G+DI N+V Y Sbjct 303 AQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYD 362 Query 458 LLTNEISMVQARGRA 472 + + + + RA Sbjct 363 MPEDSDTYLHRVARA 377 >sp|Q9LFN6|RH56_ARATH DEAD-box ATP-dependent RNA helicase 56 OS=Arabidopsis thaliana OX=3702 GN=RH56 PE=1 SV=2 Length=427 Score = 35.8 bits (81), Expect = 1.2, Method: Compositional matrix adjust. Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 2/74 (3%) Query 401 QLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL 458 +LL+ S H M+Q ++ + F++G +LVAT + G+DI N+V+ Y + Sbjct 306 KLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDM 365 Query 459 LTNEISMVQARGRA 472 + + + GRA Sbjct 366 PDSADTYLHRVGRA 379 >sp|Q56XG6|RH15_ARATH DEAD-box ATP-dependent RNA helicase 15 OS=Arabidopsis thaliana OX=3702 GN=RH15 PE=1 SV=3 Length=427 Score = 35.8 bits (81), Expect = 1.2, Method: Compositional matrix adjust. Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 2/74 (3%) Query 401 QLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL 458 +LL+ S H M+Q ++ + F++G +LVAT + G+DI N+V+ Y + Sbjct 306 KLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDM 365 Query 459 LTNEISMVQARGRA 472 + + + GRA Sbjct 366 PDSADTYLHRVGRA 379 >sp|Q1E5R1|DHH1_COCIM ATP-dependent RNA helicase DHH1 OS=Coccidioides immitis (strain RS) OX=246410 GN=DHH1 PE=3 SV=1 Length=512 Score = 36.2 bits (82), Expect = 1.2, Method: Compositional matrix adjust. Identities = 32/119 (27%), Positives = 52/119 (44%), Gaps = 15/119 (13%) Query 369 RGII----FTRTRQSAH---SLLLWLQQQQGL------QTVDIRAQLLIGAGNSSQSTH- 414 RGI F RQ H +L LQ Q + V++ A+ + G S +H Sbjct 257 RGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHA 316 Query 415 -MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA 472 M Q+++ V F++G LV + + G+DI NVV+ + N + + GR+ Sbjct 317 RMLQQNRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRS 375 >sp|Q6P4T2|U520_MOUSE U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Mus musculus OX=10090 GN=Snrnp200 PE=1 SV=1 Length=2136 Score = 36.2 bits (82), Expect = 1.2, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 61/148 (41%), Gaps = 16/148 (11%) Query 3 LRSYQWEVIMPALE-GKNIIIWLPTGAGKTRAAAYVAKRHLE---------TVDGAKVVV 52 L Q ++ ALE +N+++ PTGAGKT A R + VD K++ Sbjct 481 LNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIY 540 Query 53 LVNRVHLVTQHGEEF-RRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMAL 111 + LV + F +R+ TV L+GD +++CT E + Sbjct 541 IAPMRSLVQEMVGSFGKRLATYGITVAELTGD---HQLCKEEISATQIIVCTPEKWDIIT 597 Query 112 TSPEEEEHVELTVFSLIVVDECHHTHKD 139 E + +L LIV+DE H H D Sbjct 598 RKGGERTYTQLV--RLIVLDEIHLLHDD 623 >sp|A2QRY2|DBP10_ASPNC ATP-dependent RNA helicase dbp10 OS=Aspergillus niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) OX=425011 GN=dbp10 PE=3 SV=1 Length=932 Score = 36.2 bits (82), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/59 (34%), Positives = 31/59 (53%), Gaps = 1/59 (2%) Query 424 IQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF 481 + F+ G N+LV T VA G+DIP V+ Y + V GR ARA ++ +++ Sbjct 417 VHNFRTGISNILVVTDVAARGIDIPILANVINYDFPSQAKIFVHRVGRTARAGRTGWSY 475 >sp|Q6BT27|FAL1_DEBHA ATP-dependent RNA helicase FAL1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=FAL1 PE=3 SV=1 Length=399 Score = 35.8 bits (81), Expect = 1.2, Method: Compositional matrix adjust. Identities = 16/58 (28%), Positives = 33/58 (57%), Gaps = 0/58 (0%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA 472 M Q ++ ++ F+ G +L++T V G+D+ ++V+ Y L T++ + V GR+ Sbjct 299 MKQDERDSIMNDFRTGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENYVHRIGRS 356 >sp|Q9W3Y5|Y4443_DROME Putative ATP-dependent RNA helicase CG14443 OS=Drosophila melanogaster OX=7227 GN=CG14443 PE=3 SV=2 Length=736 Score = 36.2 bits (82), Expect = 1.3, Method: Compositional matrix adjust. Identities = 18/57 (32%), Positives = 26/57 (46%), Gaps = 0/57 (0%) Query 416 TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA 472 T ++ Q +I F G N++VAT + LD+P V+ Y N VQ R Sbjct 613 TAQENQGIIHDFGTGAYNIIVATQMTSNCLDVPGIRYVINYDFPDNIDKYVQRMSRT 669 >sp|Q0CL13|DBP3_ASPTN ATP-dependent RNA helicase dbp3 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=dbp3 PE=3 SV=1 Length=493 Score = 35.8 bits (81), Expect = 1.3, Method: Compositional matrix adjust. Identities = 35/121 (29%), Positives = 54/121 (45%), Gaps = 12/121 (10%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL-LTNE--ISMVQARGR 471 ++Q+++ + F+ G +LVAT VA GLDIP +V+ LT E + + GR Sbjct 362 LSQQERFRSLDAFKTGAATVLVATDVAARGLDIPAVKLVINVTFPLTVEDYVHRIGRTGR 421 Query 472 ARADQSVYAFVATEGSRELKRELIN-------EALETLMEQAVAAVQKMDQAEYQAKIRD 524 A A+ TE + LIN E E L++ V+K Y A +D Sbjct 422 AGAEGHAITLF-TETDKAQSGALINVLKAAGQEVPEELLKFG-GTVKKKQHDAYGAFFKD 479 Query 525 L 525 + Sbjct 480 V 480 >sp|Q6CIR0|DBP10_KLULA ATP-dependent RNA helicase DBP10 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=DBP10 PE=3 SV=1 Length=973 Score = 36.2 bits (82), Expect = 1.3, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR 473 + Q +++ + F+ G ++LV T VA G+DIP V+ Y L + + GR AR Sbjct 452 LNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRTAR 511 Query 474 ADQSVYAF 481 A +AF Sbjct 512 AGNRGWAF 519 >sp|Q1EB85|DBP5_COCIM ATP-dependent RNA helicase DBP5 OS=Coccidioides immitis (strain RS) OX=246410 GN=DBP5 PE=3 SV=1 Length=495 Score = 35.8 bits (81), Expect = 1.3, Method: Compositional matrix adjust. Identities = 28/113 (25%), Positives = 53/113 (47%), Gaps = 25/113 (22%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS--SQSTHMTQRDQQEVIQKFQ 428 IIF +TR SA + + ++ G++ S + + + + E+I +F+ Sbjct 338 IIFVKTRASAAEI----------------ERRMVAEGHTVVSLTGGIEGQKRDEIIDRFR 381 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRAR--ADQSVY 479 +GT +L+ T+V G+D+ ++V+ Y +I + G AR AD Y Sbjct 382 NGTAKVLITTNVLARGIDVSTVSMVINY-----DIPELHLPGAARRMADAQTY 429 >sp|A5A6J2|DDX5_PANTR Probable ATP-dependent RNA helicase DDX5 OS=Pan troglodytes OX=9598 GN=DDX5 PE=2 SV=1 Length=614 Score = 36.2 bits (82), Expect = 1.3, Method: Compositional matrix adjust. Identities = 19/68 (28%), Positives = 36/68 (53%), Gaps = 1/68 (1%) Query 416 TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA 474 +Q+++ V+ +F+ G +L+AT VA GLD+ V+ Y + + GR AR+ Sbjct 376 SQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARS 435 Query 475 DQSVYAFV 482 ++ A+ Sbjct 436 TKTGTAYT 443 >sp|Q5ANB2|DBP10_CANAL ATP-dependent RNA helicase DBP10 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DBP10 PE=3 SV=1 Length=908 Score = 36.2 bits (82), Expect = 1.3, Method: Compositional matrix adjust. Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 6/106 (6%) Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT--QRDQQEVIQKFQDGTLNLLV 436 S HS ++++ + ++ V +LL AG + T Q ++ + +F+ G N+LV Sbjct 393 SPHSTIVFVPTKHHVEYV---TKLLRDAGYLVSYIYGTLDQHARKNQLYQFRVGLTNVLV 449 Query 437 ATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF 481 T VA G+DIP V+ + L + + GR ARA +A+ Sbjct 450 VTDVAARGIDIPVLANVINFTLPASSKIFIHRVGRTARAGNKGWAY 495 >sp|Q5R4I9|DDX5_PONAB Probable ATP-dependent RNA helicase DDX5 OS=Pongo abelii OX=9601 GN=DDX5 PE=2 SV=1 Length=614 Score = 36.2 bits (82), Expect = 1.3, Method: Compositional matrix adjust. Identities = 19/68 (28%), Positives = 36/68 (53%), Gaps = 1/68 (1%) Query 416 TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA 474 +Q+++ V+ +F+ G +L+AT VA GLD+ V+ Y + + GR AR+ Sbjct 376 SQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARS 435 Query 475 DQSVYAFV 482 ++ A+ Sbjct 436 TKTGTAYT 443 >sp|C5BV49|UVRB_BEUC1 UvrABC system protein B OS=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / CCUG 43141 / JCM 11478 / NBRC 16432 / NCIMB 13614 / HKI 0122) OX=471853 GN=uvrB PE=3 SV=1 Length=698 Score = 36.2 bits (82), Expect = 1.3, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E++++ + G ++LV ++ EGLD+P ++V + G L + S++Q GRA Sbjct 494 ELLRELRTGVFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRA 549 >sp|Q6C0X2|DHH1_YARLI ATP-dependent RNA helicase DHH1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DHH1 PE=3 SV=1 Length=522 Score = 35.8 bits (81), Expect = 1.3, Method: Compositional matrix adjust. Identities = 22/79 (28%), Positives = 39/79 (49%), Gaps = 2/79 (3%) Query 396 VDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV 453 V++ A+ + G S +H M Q + V +F++GT LV + + G+DI NVV Sbjct 278 VELLARKITELGYSCYYSHAKMIQSHRNRVFHEFRNGTCRNLVCSDLLTRGIDIQAVNVV 337 Query 454 VRYGLLTNEISMVQARGRA 472 + + N + + GR+ Sbjct 338 INFDFPKNAETYLHRIGRS 356 >sp|Q61656|DDX5_MOUSE Probable ATP-dependent RNA helicase DDX5 OS=Mus musculus OX=10090 GN=Ddx5 PE=1 SV=2 Length=614 Score = 35.8 bits (81), Expect = 1.3, Method: Compositional matrix adjust. Identities = 19/68 (28%), Positives = 36/68 (53%), Gaps = 1/68 (1%) Query 416 TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA 474 +Q+++ V+ +F+ G +L+AT VA GLD+ V+ Y + + GR AR+ Sbjct 376 SQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARS 435 Query 475 DQSVYAFV 482 ++ A+ Sbjct 436 TKTGTAYT 443 >sp|Q94A52|RH2_ARATH Eukaryotic initiation factor 4A-III homolog OS=Arabidopsis thaliana OX=3702 GN=EIF4A3 PE=1 SV=2 Length=408 Score = 35.8 bits (81), Expect = 1.4, Method: Compositional matrix adjust. Identities = 17/64 (27%), Positives = 33/64 (52%), Gaps = 0/64 (0%) Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 SS M Q+++ ++ +F+ G +L+ T V G+D+ ++V+ Y L N + Sbjct 302 SSMHGDMPQKERDAIMNEFRSGDSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHR 361 Query 469 RGRA 472 GR+ Sbjct 362 IGRS 365 >sp|P17844|DDX5_HUMAN Probable ATP-dependent RNA helicase DDX5 OS=Homo sapiens OX=9606 GN=DDX5 PE=1 SV=1 Length=614 Score = 35.8 bits (81), Expect = 1.4, Method: Compositional matrix adjust. Identities = 19/68 (28%), Positives = 36/68 (53%), Gaps = 1/68 (1%) Query 416 TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA 474 +Q+++ V+ +F+ G +L+AT VA GLD+ V+ Y + + GR AR+ Sbjct 376 SQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARS 435 Query 475 DQSVYAFV 482 ++ A+ Sbjct 436 TKTGTAYT 443 >sp|A7HKC0|UVRB_FERNB UvrABC system protein B OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) OX=381764 GN=uvrB PE=3 SV=1 Length=661 Score = 35.8 bits (81), Expect = 1.4, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 EV++K + G ++++V ++ EGLD+P ++V G L +E +++Q GR Sbjct 483 EVLKKLRAGEIDVVVGVNLLREGLDLPEVSLVAILDADTEGFLRSETTLIQIIGRT 538 >sp|A3GFV3|FAL1_PICST ATP-dependent RNA helicase FAL1 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) OX=322104 GN=FAL1 PE=3 SV=1 Length=399 Score = 35.8 bits (81), Expect = 1.4, Method: Compositional matrix adjust. Identities = 15/58 (26%), Positives = 33/58 (57%), Gaps = 0/58 (0%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA 472 M Q ++ ++ F+ G +L++T V G+D+ ++V+ Y L T++ + + GR+ Sbjct 299 MKQDERDSIMNDFRTGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENYIHRIGRS 356 >sp|Q7VFX7|UVRB_HELHP UvrABC system protein B OS=Helicobacter hepaticus (strain ATCC 51449 / 3B1) OX=235279 GN=uvrB PE=3 SV=1 Length=658 Score = 35.8 bits (81), Expect = 1.4, Method: Compositional matrix adjust. Identities = 16/59 (27%), Positives = 34/59 (58%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ +I+ + G ++L+ ++ EGLD+P +++ + G L +E S++Q GRA Sbjct 486 ERNHLIRALRLGEFDVLIGINLLREGLDLPEVSLIAIMDADKEGFLRSETSLIQTMGRA 544 >sp|Q8GXD6|RH49_ARATH DEAD-box ATP-dependent RNA helicase 49 OS=Arabidopsis thaliana OX=3702 GN=RH49 PE=2 SV=2 Length=558 Score = 35.8 bits (81), Expect = 1.4, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 2/47 (4%) Query 412 STH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY 456 STH M Q+ + + F + + +L+ T VA GLDIP + VV+Y Sbjct 298 STHGKMDQKGRDTALASFTEASSGVLLCTDVAARGLDIPGIDYVVQY 344 >sp|Q9Y2R4|DDX52_HUMAN Probable ATP-dependent RNA helicase DDX52 OS=Homo sapiens OX=9606 GN=DDX52 PE=1 SV=4 Length=599 Score = 35.8 bits (81), Expect = 1.4, Method: Compositional matrix adjust. Identities = 22/83 (27%), Positives = 39/83 (47%), Gaps = 2/83 (2%) Query 416 TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA 474 TQ+ + + F+ G + +L+ T++ G+D N+V+ Y T+ + + GR RA Sbjct 447 TQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRA 506 Query 475 DQSVYAFV-ATEGSRELKRELIN 496 A TE + L R + N Sbjct 507 GNKGKAITFFTEDDKPLLRSVAN 529 >sp|Q821H8|UVRB_CHLCV UvrABC system protein B OS=Chlamydia caviae (strain ATCC VR-813 / DSM 19441 / 03DC25 / GPIC) OX=227941 GN=uvrB PE=3 SV=1 Length=656 Score = 35.8 bits (81), Expect = 1.4, Method: Compositional matrix adjust. Identities = 33/149 (22%), Positives = 73/149 (49%), Gaps = 22/149 (15%) Query 352 EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ 411 ++LE+I +R S + + ++ + T++ A + +L + +DI A L +++ Sbjct 429 DLLEEIRKRL--SKSQEKILVISITKKLAEDIAAFLSE------LDIAAAYLHSGIETAE 480 Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMV 466 T ++ + G +++L+ ++ EGLD+P ++V + G L + S++ Sbjct 481 RTR--------ILADLRLGNIDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSTSSLI 532 Query 467 QARGR-ARADQSVYAFVATEGSRELKREL 494 Q GR AR + F A + +R +++ L Sbjct 533 QFCGRAARNVEGKVIFYADQKTRSIEQTL 561 >sp|B3EMK1|UVRB_CHLPB UvrABC system protein B OS=Chlorobium phaeobacteroides (strain BS1) OX=331678 GN=uvrB PE=3 SV=1 Length=690 Score = 35.8 bits (81), Expect = 1.4, Method: Compositional matrix adjust. Identities = 16/59 (27%), Positives = 36/59 (61%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ +++++ + G +++LV ++ EGLD+P ++V + G L + S++Q GRA Sbjct 488 ERMQILRELRTGEIDILVGVNLLREGLDLPEVSLVAILDADKEGFLRDSKSLMQIAGRA 546 >sp|Q4IF76|DBP2_GIBZE ATP-dependent RNA helicase DBP2 OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=DBP2 PE=3 SV=2 Length=554 Score = 35.8 bits (81), Expect = 1.5, Method: Compositional matrix adjust. Identities = 23/83 (28%), Positives = 41/83 (49%), Gaps = 4/83 (5%) Query 417 QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE---ISMVQARGRAR 473 Q ++ V+ +F+ G ++VAT VA G+D+ + V+ Y N I + GRA Sbjct 419 QNERDWVLDQFKTGKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAG 478 Query 474 ADQSVYAFVATEGSRELKRELIN 496 A + T+ ++ R+L+N Sbjct 479 AMGTAITLFTTDNQKQ-ARDLVN 500 >sp|Q0U8V9|DBP8_PHANO ATP-dependent RNA helicase DBP8 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) OX=321614 GN=DBP8 PE=3 SV=1 Length=508 Score = 35.8 bits (81), Expect = 1.5, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 34/63 (54%), Gaps = 1/63 (2%) Query 413 THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR- 471 + + Q+D+ + +F+ +LVAT VA GLDIP +VV + + + + GR Sbjct 363 SGLKQQDRISNLARFRAQAARILVATDVAARGLDIPEVGLVVNFDVPRDPDDYIHRVGRT 422 Query 472 ARA 474 ARA Sbjct 423 ARA 425 >sp|P0CQ72|FAL1_CRYNJ ATP-dependent RNA helicase FAL1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=FAL1 PE=3 SV=1 Length=396 Score = 35.8 bits (81), Expect = 1.5, Method: Compositional matrix adjust. Identities = 17/64 (27%), Positives = 35/64 (55%), Gaps = 0/64 (0%) Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 SS M Q+++ ++ +F+ G +L+ T V G+D+ ++V+ Y L T+ + + Sbjct 290 SSMHGEMVQKERDAIMAEFRGGQSRVLITTDVWARGIDVQQVSLVINYDLPTSRENYLHR 349 Query 469 RGRA 472 GR+ Sbjct 350 IGRS 353 >sp|P0CQ73|FAL1_CRYNB ATP-dependent RNA helicase FAL1 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=FAL1 PE=3 SV=1 Length=396 Score = 35.8 bits (81), Expect = 1.5, Method: Compositional matrix adjust. Identities = 17/64 (27%), Positives = 35/64 (55%), Gaps = 0/64 (0%) Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 SS M Q+++ ++ +F+ G +L+ T V G+D+ ++V+ Y L T+ + + Sbjct 290 SSMHGEMVQKERDAIMAEFRGGQSRVLITTDVWARGIDVQQVSLVINYDLPTSRENYLHR 349 Query 469 RGRA 472 GR+ Sbjct 350 IGRS 353 >sp|A7TJ36|DBP3_VANPO ATP-dependent RNA helicase DBP3 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 GN=DBP3 PE=3 SV=1 Length=530 Score = 35.8 bits (81), Expect = 1.5, Method: Compositional matrix adjust. Identities = 32/131 (24%), Positives = 63/131 (48%), Gaps = 13/131 (10%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL-LTNE--ISMVQARGR 471 ++Q+ + + +F+ G ++L+AT VA GLDIP+ V+ LT E + + GR Sbjct 400 LSQQQRTNALDEFKTGRSSILLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGR 459 Query 472 ARADQSVYAFVATEGSRELKRELIN------EALETLMEQAVAAVQKMDQAEYQAKIRDL 525 A + + TE + L L+N + + +++ +K + + Y A +D+ Sbjct 460 AGKTGTAHTLF-TEQEKHLAGSLVNVLNGAGQPVPEELKKFGTHTKKKEHSAYGAFYKDV 518 Query 526 QQAALTKRAAQ 536 +TK+A + Sbjct 519 D---MTKKAKK 526 >sp|B7J0S9|UVRB_BORBZ UvrABC system protein B OS=Borreliella burgdorferi (strain ZS7) OX=445985 GN=uvrB PE=3 SV=1 Length=668 Score = 35.8 bits (81), Expect = 1.5, Method: Compositional matrix adjust. Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 7/80 (9%) Query 400 AQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV--- 454 + L+ G ++ H + ++ EVI + ++++V ++ EGLDIP ++V Sbjct 461 TEYLVNLGVRAKYLHSELDTLERVEVISLLRKSEIDVIVGINLLREGLDIPEVSLVAILD 520 Query 455 --RYGLLTNEISMVQARGRA 472 + G L + S++Q GRA Sbjct 521 ADKVGFLRSTTSLIQTIGRA 540 >sp|A5CRU3|UVRB_CLAM3 UvrABC system protein B OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) OX=443906 GN=uvrB PE=3 SV=1 Length=688 Score = 35.8 bits (81), Expect = 1.5, Method: Compositional matrix adjust. Identities = 22/73 (30%), Positives = 40/73 (55%), Gaps = 9/73 (12%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRARADQ 476 E++ + + G ++LV ++ EGLD+P ++V + G L + S++Q GRA + Sbjct 490 ELLSELRAGVYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSTSLIQTIGRAARNV 549 Query 477 S----VYAFVATE 485 S +YA V T+ Sbjct 550 SGEVHMYADVLTD 562 >sp|Q59ZH9|MAK5_CANAL ATP-dependent RNA helicase MAK5 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=MAK5 PE=3 SV=2 Length=782 Score = 35.8 bits (81), Expect = 1.5, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 38/67 (57%), Gaps = 5/67 (7%) Query 413 THMTQRDQQEVIQKFQDGT----LNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 + M Q+ + ++KF++ + + +LVA+ VA GLDIP+ + VV Y L + + Sbjct 519 SSMIQKQRLRALEKFKEASQKNEVAVLVASDVAARGLDIPNIDHVVHYHLPRSADVYIHR 578 Query 469 RGR-ARA 474 GR ARA Sbjct 579 SGRTARA 585 >sp|Q9H8H2|DDX31_HUMAN ATP-dependent DNA helicase DDX31 OS=Homo sapiens OX=9606 GN=DDX31 PE=1 SV=2 Length=851 Score = 35.8 bits (81), Expect = 1.6, Method: Compositional matrix adjust. Identities = 17/57 (30%), Positives = 28/57 (49%), Gaps = 0/57 (0%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 M Q ++ V Q+F +L+ T VA GLD+P +V+Y ++ + GR Sbjct 562 MEQEERTAVFQEFSHSRRGVLLCTDVAARGLDLPQVTWIVQYNAPSSPAEYIHRIGR 618 >sp|O51776|UVRB_BORBU UvrABC system protein B OS=Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31) OX=224326 GN=uvrB PE=3 SV=1 Length=673 Score = 35.8 bits (81), Expect = 1.6, Method: Compositional matrix adjust. Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 7/80 (9%) Query 400 AQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV--- 454 + L+ G ++ H + ++ EVI + ++++V ++ EGLDIP ++V Sbjct 466 TEYLVNLGVRAKYLHSELDTLERVEVISLLRKSEIDVIVGINLLREGLDIPEVSLVAILD 525 Query 455 --RYGLLTNEISMVQARGRA 472 + G L + S++Q GRA Sbjct 526 ADKVGFLRSTTSLIQTIGRA 545 >sp|Q2HFP1|IF4A_CHAGB ATP-dependent RNA helicase eIF4A OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=TIF1 PE=3 SV=1 Length=397 Score = 35.4 bits (80), Expect = 1.6, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 54/115 (47%), Gaps = 18/115 (16%) Query 347 ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA 406 E+ KL+ L + + + + +IF TR+ WL + LQ D + G Sbjct 247 EDWKLDTLSDL----YETVTITQAVIFCNTRRKVD----WLTDK--LQARDFTVSAMHGD 296 Query 407 GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN 461 + TQRD ++++F+ G+ +L+AT + G+D+ ++V+ Y L N Sbjct 297 MDQ------TQRDL--IMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPAN 343 >sp|Q65ZT8|UVRB_BORGP UvrABC system protein B OS=Borrelia garinii subsp. bavariensis (strain ATCC BAA-2496 / DSM 23469 / PBi) OX=290434 GN=uvrB PE=3 SV=1 Length=664 Score = 35.8 bits (81), Expect = 1.6, Method: Compositional matrix adjust. Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 7/80 (9%) Query 400 AQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV--- 454 + L+ G ++ H + ++ EVI + ++++V ++ EGLDIP ++V Sbjct 461 TEYLVSLGVRAKYLHSELDTLERVEVISLLRKSEIDVIVGINLLREGLDIPEVSLVAILD 520 Query 455 --RYGLLTNEISMVQARGRA 472 + G L + S++Q GRA Sbjct 521 ADKVGFLRSTTSLIQTIGRA 540 >sp|A2QFL3|DBP3_ASPNC ATP-dependent RNA helicase dbp3 OS=Aspergillus niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) OX=425011 GN=dbp3 PE=3 SV=1 Length=495 Score = 35.8 bits (81), Expect = 1.6, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 3/64 (5%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL-LTNE--ISMVQARGR 471 + Q+++ + ++ F+ G +LVAT VA GLDIP +V+ LT E + + GR Sbjct 364 LGQQERFKSLESFKKGVSTVLVATDVAARGLDIPSVKLVINVTFPLTVEDYVHRIGRTGR 423 Query 472 ARAD 475 A A+ Sbjct 424 AGAE 427 >sp|B0RES6|UVRB_CLASE UvrABC system protein B OS=Clavibacter sepedonicus OX=31964 GN=uvrB PE=3 SV=1 Length=688 Score = 35.8 bits (81), Expect = 1.6, Method: Compositional matrix adjust. Identities = 22/73 (30%), Positives = 40/73 (55%), Gaps = 9/73 (12%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRARADQ 476 E++ + + G ++LV ++ EGLD+P ++V + G L + S++Q GRA + Sbjct 490 ELLSELRAGVYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSTSLIQTIGRAARNV 549 Query 477 S----VYAFVATE 485 S +YA V T+ Sbjct 550 SGEVHMYADVLTD 562 >sp|Q6CDV4|IF4A_YARLI ATP-dependent RNA helicase eIF4A OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=TIF1 PE=3 SV=1 Length=395 Score = 35.4 bits (80), Expect = 1.6, Method: Compositional matrix adjust. Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 18/102 (18%) Query 362 FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH-MTQRDQ 420 + + N + +IF TR+ VD Q L A + S H T++ Q Sbjct 256 YETINVSQAVIFCNTRRK----------------VDYLTQALTEADFTVSSMHGETEQSQ 299 Query 421 QEVIQK-FQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN 461 ++VI K F+ G+ +L+ T + G+D+ ++V+ + L +N Sbjct 300 RDVIMKAFRTGSSRILITTDLLARGIDVQQVSLVINFDLPSN 341 >sp|A5D7C1|DDX52_BOVIN Probable ATP-dependent RNA helicase DDX52 OS=Bos taurus OX=9913 GN=DDX52 PE=2 SV=1 Length=596 Score = 35.8 bits (81), Expect = 1.6, Method: Compositional matrix adjust. Identities = 22/83 (27%), Positives = 39/83 (47%), Gaps = 2/83 (2%) Query 416 TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA 474 TQ+ + + F+ G + +L+ T++ G+D N+V+ Y T+ + + GR RA Sbjct 445 TQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRA 504 Query 475 DQSVYAFV-ATEGSRELKRELIN 496 A TE + L R + N Sbjct 505 GHKGKAVTFFTEDDKPLLRSVAN 527 Score = 33.9 bits (76), Expect = 5.2, Method: Compositional matrix adjust. Identities = 33/142 (23%), Positives = 61/142 (43%), Gaps = 16/142 (11%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLE--TVDGAKVVVLVNRVHLVTQHG 64 Q + I L G+ ++ PTG+GKT A + HL+ T G + +++ L +Q Sbjct 190 QMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMHLKQPTNKGFRALIISPTRELASQIH 249 Query 65 EEFRRMLDGRW-------TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE 117 E ++ +G + GP++ ++ D+L+ T L L ++ Sbjct 250 RELVKLSEGTGFRIHMIHKAAVAAKKFGPKS-----SKKFDILVTTPNRLIYLLK--QDP 302 Query 118 EHVELTVFSLIVVDECHHTHKD 139 ++LT +VVDE +D Sbjct 303 PGIDLTSVEWLVVDESDKLFED 324 >sp|Q8JFP1|IF4A2_CHICK Eukaryotic initiation factor 4A-II OS=Gallus gallus OX=9031 GN=EIF4A2 PE=2 SV=1 Length=407 Score = 35.4 bits (80), Expect = 1.6, Method: Compositional matrix adjust. Identities = 22/93 (24%), Positives = 45/93 (48%), Gaps = 14/93 (15%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 + +IF TR+ WL ++ + D L G M Q+++ ++++F+ Sbjct 275 QAVIFLNTRRKVD----WLTEK--MHARDFTVSALHG--------DMDQKERDVIMREFR 320 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN 461 G+ +L+ T + G+D+ ++V+ Y L TN Sbjct 321 SGSSRVLITTDLLARGIDVQQVSLVINYDLPTN 353 >sp|A1C5V3|DBP3_ASPCL ATP-dependent RNA helicase dbp3 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=dbp3 PE=3 SV=1 Length=503 Score = 35.8 bits (81), Expect = 1.6, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 4/75 (5%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL-LTNE--ISMVQARGR 471 + Q ++ + + F+ G +LVAT VA GLDIP +V+ LT E + + GR Sbjct 372 LNQHERFKSLDAFKSGAATVLVATDVAARGLDIPSVKLVINVTFPLTVEDYVHRIGRTGR 431 Query 472 ARAD-QSVYAFVATE 485 A A+ +++ F T+ Sbjct 432 AGAEGRAITLFTETD 446 >sp|Q07886|DDX49_DROME Probable ATP-dependent RNA helicase Dbp45A OS=Drosophila melanogaster OX=7227 GN=Dbp45A PE=2 SV=2 Length=521 Score = 35.8 bits (81), Expect = 1.6, Method: Compositional matrix adjust. Identities = 22/73 (30%), Positives = 37/73 (51%), Gaps = 6/73 (8%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR 473 M Q+++ + +F+ + L+AT VA GLDIP +V+ + L + GR AR Sbjct 285 MRQKERVAALSRFKSNQIRTLIATDVAARGLDIPSVELVMNHMLPRTPKEYIHRVGRTAR 344 Query 474 ADQ-----SVYAF 481 A + S++ F Sbjct 345 AGRKGMSISIFRF 357 >sp|A7TK55|IF4A_VANPO ATP-dependent RNA helicase eIF4A OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 GN=TIF1 PE=3 SV=1 Length=396 Score = 35.4 bits (80), Expect = 1.6, Method: Compositional matrix adjust. Identities = 14/54 (26%), Positives = 35/54 (65%), Gaps = 0/54 (0%) Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE 462 SS + + Q+++ ++++F+ G+ +L++T + G+D+ ++V+ Y L TN+ Sbjct 289 SSIYSDLPQQERDVIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPTNK 342 >sp|O75643|U520_HUMAN U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens OX=9606 GN=SNRNP200 PE=1 SV=2 Length=2136 Score = 35.8 bits (81), Expect = 1.6, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 61/148 (41%), Gaps = 16/148 (11%) Query 3 LRSYQWEVIMPALE-GKNIIIWLPTGAGKTRAAAYVAKRHLE---------TVDGAKVVV 52 L Q ++ ALE +N+++ PTGAGKT A R + VD K++ Sbjct 481 LNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIY 540 Query 53 LVNRVHLVTQHGEEF-RRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMAL 111 + LV + F +R+ TV L+GD +++CT E + Sbjct 541 IAPMRSLVQEMVGSFGKRLATYGITVAELTGD---HQLCKEEISATQIIVCTPEKWDIIT 597 Query 112 TSPEEEEHVELTVFSLIVVDECHHTHKD 139 E + +L LI++DE H H D Sbjct 598 RKGGERTYTQLV--RLIILDEIHLLHDD 623 >sp|Q4R4Y9|IF4A2_MACFA Eukaryotic initiation factor 4A-II OS=Macaca fascicularis OX=9541 GN=EIF4A2 PE=2 SV=1 Length=408 Score = 35.4 bits (80), Expect = 1.6, Method: Compositional matrix adjust. Identities = 22/93 (24%), Positives = 45/93 (48%), Gaps = 14/93 (15%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 + +IF TR+ WL ++ + D L G M Q+++ ++++F+ Sbjct 276 QAVIFLNTRRKVD----WLTEK--MHARDFTVSALHG--------DMDQKERDVIMREFR 321 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN 461 G+ +L+ T + G+D+ ++V+ Y L TN Sbjct 322 SGSSRVLITTDLLARGIDVQQVSLVINYDLPTN 354 >sp|Q5A9Z6|FAL1_CANAL ATP-dependent RNA helicase FAL1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=FAL1 PE=3 SV=1 Length=399 Score = 35.4 bits (80), Expect = 1.6, Method: Compositional matrix adjust. Identities = 15/58 (26%), Positives = 33/58 (57%), Gaps = 0/58 (0%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA 472 M Q ++ ++ F+ G +L++T V G+D+ ++V+ Y L T++ + + GR+ Sbjct 299 MKQDERDSIMNDFRRGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENYIHRIGRS 356 >sp|Q1MTR1|IRC3_SCHPO Putative mitochondrial ATP-dependent helicase irc3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=irc3 PE=3 SV=2 Length=606 Score = 35.8 bits (81), Expect = 1.6, Method: Compositional matrix adjust. Identities = 51/210 (24%), Positives = 93/210 (44%), Gaps = 33/210 (16%) Query 1 MELRSYQWEVIMPAL----EGKN-IIIWLPTGAGKTRAAAYVAKRHLETV--DGAKVVVL 53 ++LR YQ E + L EGK I + L TG+GKT + K + T+ + + ++L Sbjct 25 LKLRPYQEECLSACLNAFDEGKRRIAVSLATGSGKTALFPHFIK-YAPTLRPNSEQCLIL 83 Query 54 VNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTS 113 V+R L Q + R L + ++ DMG + G A++ ++ S Sbjct 84 VHRKELALQALKHCRESLPNK----SIEIDMGNQCASG-----------LADVTVASVFS 128 Query 114 PEEEEHVELTV--FSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS-- 169 + E ++ F L++ DE HH + ++ ++ + ++++ V+GLTA+ Sbjct 129 LKNERLLKYNPLNFKLLIFDEVHHMASPSYLRIL--EHFGAESEKSK--VNVIGLTATLF 184 Query 170 --PGTGGASKLDGAINHVLQLCANLDTWCI 197 G G A LD + H + D W + Sbjct 185 RADGKGLACGLDEIVYHRHFVDMIKDNWLV 214 >sp|Q5RKI1|IF4A2_RAT Eukaryotic initiation factor 4A-II OS=Rattus norvegicus OX=10116 GN=Eif4a2 PE=1 SV=1 Length=407 Score = 35.4 bits (80), Expect = 1.7, Method: Compositional matrix adjust. Identities = 22/93 (24%), Positives = 45/93 (48%), Gaps = 14/93 (15%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 + +IF TR+ WL ++ + D L G M Q+++ ++++F+ Sbjct 275 QAVIFLNTRRKVD----WLTEK--MHARDFTVSALHG--------DMDQKERDVIMREFR 320 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN 461 G+ +L+ T + G+D+ ++V+ Y L TN Sbjct 321 SGSSRVLITTDLLARGIDVQQVSLVINYDLPTN 353 >sp|Q5R4X1|IF4A2_PONAB Eukaryotic initiation factor 4A-II OS=Pongo abelii OX=9601 GN=EIF4A2 PE=2 SV=1 Length=407 Score = 35.4 bits (80), Expect = 1.7, Method: Compositional matrix adjust. Identities = 22/93 (24%), Positives = 45/93 (48%), Gaps = 14/93 (15%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 + +IF TR+ WL ++ + D L G M Q+++ ++++F+ Sbjct 275 QAVIFLNTRRKVD----WLTEK--MHARDFTVSALHG--------DMDQKERDVIMREFR 320 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN 461 G+ +L+ T + G+D+ ++V+ Y L TN Sbjct 321 SGSSRVLITTDLLARGIDVQQVSLVINYDLPTN 353 >sp|P10630|IF4A2_MOUSE Eukaryotic initiation factor 4A-II OS=Mus musculus OX=10090 GN=Eif4a2 PE=1 SV=2 Length=407 Score = 35.4 bits (80), Expect = 1.7, Method: Compositional matrix adjust. Identities = 22/93 (24%), Positives = 45/93 (48%), Gaps = 14/93 (15%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 + +IF TR+ WL ++ + D L G M Q+++ ++++F+ Sbjct 275 QAVIFLNTRRKVD----WLTEK--MHARDFTVSALHG--------DMDQKERDVIMREFR 320 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN 461 G+ +L+ T + G+D+ ++V+ Y L TN Sbjct 321 SGSSRVLITTDLLARGIDVQQVSLVINYDLPTN 353 >sp|Q14240|IF4A2_HUMAN Eukaryotic initiation factor 4A-II OS=Homo sapiens OX=9606 GN=EIF4A2 PE=1 SV=2 Length=407 Score = 35.4 bits (80), Expect = 1.7, Method: Compositional matrix adjust. Identities = 22/93 (24%), Positives = 45/93 (48%), Gaps = 14/93 (15%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 + +IF TR+ WL ++ + D L G M Q+++ ++++F+ Sbjct 275 QAVIFLNTRRKVD----WLTEK--MHARDFTVSALHG--------DMDQKERDVIMREFR 320 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN 461 G+ +L+ T + G+D+ ++V+ Y L TN Sbjct 321 SGSSRVLITTDLLARGIDVQQVSLVINYDLPTN 353 >sp|Q3SZ65|IF4A2_BOVIN Eukaryotic initiation factor 4A-II OS=Bos taurus OX=9913 GN=EIF4A2 PE=2 SV=1 Length=407 Score = 35.4 bits (80), Expect = 1.7, Method: Compositional matrix adjust. Identities = 22/93 (24%), Positives = 45/93 (48%), Gaps = 14/93 (15%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 + +IF TR+ WL ++ + D L G M Q+++ ++++F+ Sbjct 275 QAVIFLNTRRKVD----WLTEK--MHARDFTVSALHG--------DMDQKERDVIMREFR 320 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN 461 G+ +L+ T + G+D+ ++V+ Y L TN Sbjct 321 SGSSRVLITTDLLARGIDVQQVSLVINYDLPTN 353 >sp|Q6FKN8|DBP5_CANGA ATP-dependent RNA helicase DBP5 OS=Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DBP5 PE=3 SV=1 Length=504 Score = 35.4 bits (80), Expect = 1.7, Method: Compositional matrix adjust. Identities = 17/44 (39%), Positives = 28/44 (64%), Gaps = 2/44 (5%) Query 417 QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT 460 +RD+ +I F++G +L+ T+V G+DIP ++VV Y L T Sbjct 390 ERDR--LIDDFREGRSKVLITTNVLARGIDIPSVSMVVNYDLPT 431 >sp|A1AZF8|SYGB_PARDP Glycine--tRNA ligase beta subunit OS=Paracoccus denitrificans (strain Pd 1222) OX=318586 GN=glyS PE=3 SV=1 Length=685 Score = 35.8 bits (81), Expect = 1.7, Method: Compositional matrix adjust. Identities = 31/130 (24%), Positives = 56/130 (43%), Gaps = 14/130 (11%) Query 304 AALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFS 363 AAL+ F +T+ Q L DD+K ++ P P E++ ++L+R Sbjct 80 AALEGFLRSTGLTREQ--------LEARDDKKGQVWFAVVTKPGRPAAEIVAEVLERAIR 131 Query 364 SSNSPRGIIFT----RTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRD 419 P+ + + R + HS++ L + G V + + IGAGN+++ D Sbjct 132 DFPWPKSMRWGSGSLRWVRPLHSIICLLSDESGASVVPLEIE-GIGAGNTTRGHRFMAPD 190 Query 420 QQEVIQKFQD 429 + V F+D Sbjct 191 EIAV-SGFED 199 >sp|Q4PDT1|DBP3_USTMA ATP-dependent RNA helicase DBP3 OS=Ustilago maydis (strain 521 / FGSC 9021) OX=237631 GN=DBP3 PE=3 SV=1 Length=585 Score = 35.4 bits (80), Expect = 1.7, Method: Compositional matrix adjust. Identities = 17/42 (40%), Positives = 25/42 (60%), Gaps = 0/42 (0%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY 456 + Q ++ +++F+ LLVAT VA GLDIP+ VV Y Sbjct 454 LGQNERIASLERFKSAETPLLVATDVAARGLDIPNVEHVVNY 495 >sp|A7TJM9|DRS1_VANPO ATP-dependent RNA helicase DRS1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 GN=DRS1 PE=3 SV=1 Length=752 Score = 35.8 bits (81), Expect = 1.7, Method: Compositional matrix adjust. Identities = 33/150 (22%), Positives = 65/150 (43%), Gaps = 16/150 (11%) Query 358 LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ 417 L R+ + R ++F ++ AH L + L L+G +TQ Sbjct 470 LIRKLDGTGQKRIVVFVARKEMAHKLRIILG--------------LLGMKVGELHGSLTQ 515 Query 418 RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN-EISMVQARGRARADQ 476 + + + F+ + +L+ T +A GLDIP VV+ + + + EI + + ARA + Sbjct 516 EQRLQSVNNFKSLEVPVLICTDLASRGLDIPKIEVVINFDMPKSYEIYLHRVGRTARAGR 575 Query 477 SVYAFVATEGSRELKRELINEALETLMEQA 506 + V G R ++ A++++ E + Sbjct 576 EGRS-VTFVGESSQDRSIVRSAIKSVEESS 604 >sp|Q7XJN0|RH17_ARATH DEAD-box ATP-dependent RNA helicase 17 OS=Arabidopsis thaliana OX=3702 GN=RH17 PE=2 SV=1 Length=609 Score = 35.4 bits (80), Expect = 1.8, Method: Compositional matrix adjust. Identities = 31/136 (23%), Positives = 57/136 (42%), Gaps = 16/136 (12%) Query 346 PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSA---HSLLLWLQ-------QQQGLQT 395 P +L L +L+ F S + ++F TR + +SLL Q +++G + Sbjct 310 PCGARLVALLSVLKNLFEREASQKVVVFFSTRDAVDFHYSLLSEFQWPPNSETEEEGTKE 369 Query 396 VDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVR 455 + ++ + G+ M Q D++ F+ +L++T VA GLD P +++ Sbjct 370 LFLKCKTFRLHGS------MEQEDRRSAFGTFKTEKQAVLLSTDVAARGLDFPKVRCIIQ 423 Query 456 YGLLTNEISMVQARGR 471 Y V GR Sbjct 424 YDCPGEATEYVHRVGR 439 >sp|Q0SM15|UVRB_BORAP UvrABC system protein B OS=Borreliella afzelii (strain PKo) OX=390236 GN=uvrB PE=3 SV=1 Length=664 Score = 35.4 bits (80), Expect = 1.8, Method: Compositional matrix adjust. Identities = 27/109 (25%), Positives = 53/109 (49%), Gaps = 19/109 (17%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 R +I T T++ + L +L T+ ++A+ L + + ++ EVI + Sbjct 446 RVLITTLTKKMSEDLTEYLV------TLGVKAKYL--------HSELDTLERVEVISLLR 491 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++++V ++ EGLDIP ++V + G L + S++Q GRA Sbjct 492 KSEIDVIVGINLLREGLDIPEVSLVAILDADKVGFLRSATSLIQTIGRA 540 >sp|P15043|RECQ_ECOLI ATP-dependent DNA helicase RecQ OS=Escherichia coli (strain K12) OX=83333 GN=recQ PE=1 SV=5 Length=609 Score = 35.4 bits (80), Expect = 1.8, Method: Compositional matrix adjust. Identities = 37/155 (24%), Positives = 59/155 (38%), Gaps = 23/155 (15%) Query 326 RLLALFDDRKNELAHLATHGPENPKLEMLEKI-----LQRQFSSSNSPRGIIFTRTRQSA 380 RLL L D L +++ N + ++EK L R GII+ +R Sbjct 194 RLLGLND----PLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKV 249 Query 381 HSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSV 440 LQ + G ++ + + +V +KFQ L ++VAT Sbjct 250 EDTAARLQSK--------------GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVA 295 Query 441 AEEGLDIPHCNVVVRYGLLTNEISMVQARGRARAD 475 G++ P+ VV + + N S Q GRA D Sbjct 296 FGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRD 330 >sp|B2SUN1|UVRB_XANOP UvrABC system protein B OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) OX=360094 GN=uvrB PE=3 SV=1 Length=673 Score = 35.4 bits (80), Expect = 1.9, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + G ++LV ++ EGLD+P ++V + G L + S++Q GRA Sbjct 487 EIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRA 542 >sp|Q2P0Z3|UVRB_XANOM UvrABC system protein B OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) OX=342109 GN=uvrB PE=3 SV=1 Length=673 Score = 35.4 bits (80), Expect = 1.9, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + G ++LV ++ EGLD+P ++V + G L + S++Q GRA Sbjct 487 EIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRA 542 >sp|Q12099|FAL1_YEAST ATP-dependent RNA helicase FAL1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=FAL1 PE=1 SV=1 Length=399 Score = 35.4 bits (80), Expect = 1.9, Method: Compositional matrix adjust. Identities = 24/83 (29%), Positives = 43/83 (52%), Gaps = 5/83 (6%) Query 394 QTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN 451 + VD +Q LI + + S H M Q ++ +V+ F+ G +L++T V G+D+ + Sbjct 276 KKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVS 335 Query 452 VVVRYGL---LTNEISMVQARGR 471 +V+ Y L + N I + GR Sbjct 336 LVINYDLPEIIENYIHRIGRSGR 358 >sp|A6ZXY5|FAL1_YEAS7 ATP-dependent RNA helicase FAL1 OS=Saccharomyces cerevisiae (strain YJM789) OX=307796 GN=FAL1 PE=3 SV=1 Length=399 Score = 35.4 bits (80), Expect = 1.9, Method: Compositional matrix adjust. Identities = 24/83 (29%), Positives = 43/83 (52%), Gaps = 5/83 (6%) Query 394 QTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN 451 + VD +Q LI + + S H M Q ++ +V+ F+ G +L++T V G+D+ + Sbjct 276 KKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVS 335 Query 452 VVVRYGL---LTNEISMVQARGR 471 +V+ Y L + N I + GR Sbjct 336 LVINYDLPEIIENYIHRIGRSGR 358 >sp|B0RRD9|UVRB_XANCB UvrABC system protein B OS=Xanthomonas campestris pv. campestris (strain B100) OX=509169 GN=uvrB PE=3 SV=1 Length=673 Score = 35.4 bits (80), Expect = 1.9, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + G ++LV ++ EGLD+P ++V + G L + S++Q GRA Sbjct 487 EIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRA 542 >sp|A0AKW5|DCUP_LISW6 Uroporphyrinogen decarboxylase OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / CCUG 15529 / CIP 8149 / NCTC 11857 / SLCC 5334 / V8) OX=386043 GN=hemE PE=3 SV=1 Length=350 Score = 35.0 bits (79), Expect = 1.9, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 4/61 (7%) Query 190 ANLDTWCIMSPQNCCPQ----LQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLE 245 NLD +++P+ C + +QE +P +NL H + ++LKKL + IHD E Sbjct 285 GNLDPSTLLAPEKCLEEAERIIQEGILKPGYIFNLGHGVFPEVQPEMLKKLTNYIHDRSE 344 Query 246 M 246 + Sbjct 345 I 345 >sp|Q890X8|UVRB_CLOTE UvrABC system protein B OS=Clostridium tetani (strain Massachusetts / E88) OX=212717 GN=uvrB PE=3 SV=1 Length=661 Score = 35.4 bits (80), Expect = 1.9, Method: Compositional matrix adjust. Identities = 26/112 (23%), Positives = 56/112 (50%), Gaps = 19/112 (17%) Query 366 NSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQ 425 N R ++ T T++ A L + ++ ++I+ + L + + ++ ++I+ Sbjct 443 NGFRVLVTTLTKKMAEDLTEYFKE------MNIKTRYL--------HSDIDTIERMKIIR 488 Query 426 KFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 + + G ++LV ++ EGLDIP +V + G L ++ S++Q GRA Sbjct 489 ELRLGEFDVLVGINLLREGLDIPEVALVAILDADKEGFLRSDRSLIQIIGRA 540 >sp|Q3IKF4|UVRB_PSET1 UvrABC system protein B OS=Pseudoalteromonas translucida (strain TAC 125) OX=326442 GN=uvrB PE=3 SV=1 Length=664 Score = 35.4 bits (80), Expect = 1.9, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + G ++LV ++ EGLD+P +V + G L + S++Q GRA Sbjct 487 EIIRDLRAGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSARSIIQTVGRA 542 >sp|Q4R6M5|DDX5_MACFA Probable ATP-dependent RNA helicase DDX5 OS=Macaca fascicularis OX=9541 GN=DDX5 PE=2 SV=1 Length=614 Score = 35.4 bits (80), Expect = 1.9, Method: Compositional matrix adjust. Identities = 19/68 (28%), Positives = 36/68 (53%), Gaps = 1/68 (1%) Query 416 TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA 474 +Q+++ V+ +F+ G +L+AT VA GLD+ V+ Y + + GR AR+ Sbjct 376 SQQERGWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARS 435 Query 475 DQSVYAFV 482 ++ A+ Sbjct 436 TKTGTAYT 443 >sp|Q5GXX4|UVRB_XANOR UvrABC system protein B OS=Xanthomonas oryzae pv. oryzae (strain KACC10331 / KXO85) OX=291331 GN=uvrB PE=3 SV=1 Length=688 Score = 35.4 bits (80), Expect = 1.9, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + G ++LV ++ EGLD+P ++V + G L + S++Q GRA Sbjct 502 EIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRA 557 >sp|Q0CMM8|DBP10_ASPTN ATP-dependent RNA helicase dbp10 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=dbp10 PE=3 SV=1 Length=928 Score = 35.4 bits (80), Expect = 1.9, Method: Compositional matrix adjust. Identities = 20/59 (34%), Positives = 30/59 (51%), Gaps = 1/59 (2%) Query 424 IQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF 481 + F+ G N+LV T VA G+DIP V+ Y + V GR ARA + +++ Sbjct 417 VNNFRTGLSNILVVTDVAARGIDIPILANVINYDFPSQPKIFVHRVGRTARAGRKGWSY 475 >sp|Q8P7X1|UVRB_XANCP UvrABC system protein B OS=Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25) OX=190485 GN=uvrB PE=3 SV=1 Length=673 Score = 35.4 bits (80), Expect = 1.9, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + G ++LV ++ EGLD+P ++V + G L + S++Q GRA Sbjct 487 EIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRA 542 >sp|Q4UW79|UVRB_XANC8 UvrABC system protein B OS=Xanthomonas campestris pv. campestris (strain 8004) OX=314565 GN=uvrB PE=3 SV=1 Length=673 Score = 35.4 bits (80), Expect = 1.9, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + G ++LV ++ EGLD+P ++V + G L + S++Q GRA Sbjct 487 EIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRA 542 >sp|Q4IPI1|ROK1_GIBZE ATP-dependent RNA helicase ROK1 OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=ROK1 PE=3 SV=1 Length=693 Score = 35.4 bits (80), Expect = 1.9, Method: Compositional matrix adjust. Identities = 39/152 (26%), Positives = 65/152 (43%), Gaps = 12/152 (8%) Query 325 RRLLALFDDRKNELAH-LATHGPENPKLEMLEKILQRQFSSSNSPR----GIIFTRTRQS 379 R ++ L D +AH L E KL L ++L S + P ++FT+T Sbjct 425 RLVVGLKDTAVPNIAHKLIYTASEQGKLLALRQLLHPTASDDSGPPLRPPFLVFTQTIDR 484 Query 380 AHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATS 439 A +L LQ DI + A ++ + +T + +++KF+ G + +L+ T Sbjct 485 ATALHEELQ-------YDIPLEAGGAARIAALHSGLTDSARSSIMRKFRAGDIWILITTD 537 Query 440 VAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 V G+D N VV Y + + V GR Sbjct 538 VLARGVDFAGVNGVVNYDVPGSSAGYVHRAGR 569 >sp|P0C2N7|DRS1_CHAGB ATP-dependent RNA helicase DRS1 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=DRS1 PE=3 SV=1 Length=795 Score = 35.4 bits (80), Expect = 2.0, Method: Compositional matrix adjust. Identities = 25/66 (38%), Positives = 36/66 (55%), Gaps = 2/66 (3%) Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VAT 484 F+DG +N L+AT +A GLDI + V+ Y + V GR ARA +S A +A Sbjct 561 FRDGKVNYLLATDLASRGLDIKGIDTVINYEAPQSLEIYVHRVGRTARAGRSGVAITLAA 620 Query 485 EGSREL 490 E R++ Sbjct 621 EPDRKV 626 >sp|Q8PJB1|UVRB_XANAC UvrABC system protein B OS=Xanthomonas axonopodis pv. citri (strain 306) OX=190486 GN=uvrB PE=3 SV=1 Length=673 Score = 35.4 bits (80), Expect = 2.0, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+I+ + G ++LV ++ EGLD+P ++V + G L + S++Q GRA Sbjct 487 EIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRA 542 >sp|A5E1N2|ROK1_LODEL ATP-dependent RNA helicase ROK1 OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) OX=379508 GN=ROK1 PE=3 SV=1 Length=553 Score = 35.4 bits (80), Expect = 2.0, Method: Compositional matrix adjust. Identities = 14/43 (33%), Positives = 27/43 (63%), Gaps = 0/43 (0%) Query 416 TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL 458 T + + EVI++F++G + +L+ T V G+D N+V+ Y + Sbjct 401 TPKQRDEVIKRFKNGDIWVLITTDVLARGVDFKGVNMVINYDV 443 >sp|P20449|DBP5_YEAST ATP-dependent RNA helicase DBP5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DBP5 PE=1 SV=2 Length=482 Score = 35.4 bits (80), Expect = 2.0, Method: Compositional matrix adjust. Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 14/91 (15%) Query 370 GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD 429 IIF T+++A+ L L+ + G S + +++ +I F++ Sbjct 333 SIIFVATKKTANVLYGKLKSE--------------GHEVSILHGDLQTQERDRLIDDFRE 378 Query 430 GTLNLLVATSVAEEGLDIPHCNVVVRYGLLT 460 G +L+ T+V G+DIP ++VV Y L T Sbjct 379 GRSKVLITTNVLARGIDIPTVSMVVNYDLPT 409 >sp|A6ZNQ1|DBP5_YEAS7 ATP-dependent RNA helicase DBP5 OS=Saccharomyces cerevisiae (strain YJM789) OX=307796 GN=DBP5 PE=3 SV=1 Length=482 Score = 35.4 bits (80), Expect = 2.0, Method: Compositional matrix adjust. Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 14/91 (15%) Query 370 GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD 429 IIF T+++A+ L L+ + G S + +++ +I F++ Sbjct 333 SIIFVATKKTANVLYGKLKSE--------------GHEVSILHGDLQTQERDRLIDDFRE 378 Query 430 GTLNLLVATSVAEEGLDIPHCNVVVRYGLLT 460 G +L+ T+V G+DIP ++VV Y L T Sbjct 379 GRSKVLITTNVLARGIDIPTVSMVVNYDLPT 409 >sp|Q9PJF4|UVRB_CHLMU UvrABC system protein B OS=Chlamydia muridarum (strain MoPn / Nigg) OX=243161 GN=uvrB PE=3 SV=1 Length=676 Score = 35.4 bits (80), Expect = 2.0, Method: Compositional matrix adjust. Identities = 21/78 (27%), Positives = 40/78 (51%), Gaps = 7/78 (9%) Query 400 AQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV----- 454 A+L I A +R Q ++ + GT+++L+ ++ EG+D+P ++V Sbjct 478 AELGIAAAYLHSGIETAERTQ--ILTDLRLGTIDVLIGVNLLREGIDLPEVSLVAILDAD 535 Query 455 RYGLLTNEISMVQARGRA 472 + G L + S++Q GRA Sbjct 536 KEGFLRSSASLIQFCGRA 553 >sp|Q8K301|DDX52_MOUSE Probable ATP-dependent RNA helicase DDX52 OS=Mus musculus OX=10090 GN=Ddx52 PE=2 SV=2 Length=598 Score = 35.4 bits (80), Expect = 2.1, Method: Compositional matrix adjust. Identities = 22/83 (27%), Positives = 39/83 (47%), Gaps = 2/83 (2%) Query 416 TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA 474 TQ+ + + F+ G + +L+ T++ G+D N+V+ Y T+ + + GR RA Sbjct 448 TQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRA 507 Query 475 DQSVYAFV-ATEGSRELKRELIN 496 A TE + L R + N Sbjct 508 GNRGKAVTFFTEDDKPLLRSVAN 530 >sp|Q8RXK6|RH8_ARATH DEAD-box ATP-dependent RNA helicase 8 OS=Arabidopsis thaliana OX=3702 GN=RH8 PE=2 SV=1 Length=505 Score = 35.4 bits (80), Expect = 2.1, Method: Compositional matrix adjust. Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 11/111 (10%) Query 373 FTRTRQSAH---SLLLWLQQQQGL------QTVDIRAQLLIGAGNSSQSTH--MTQRDQQ 421 F RQ H +L LQ Q + V++ A+ + G S H M Q + Sbjct 349 FVEERQKIHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRN 408 Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA 472 V F++G LV T + G+DI NVV+ + N + + GR+ Sbjct 409 RVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRS 459 >sp|A5DS77|DBP2_LODEL ATP-dependent RNA helicase DBP2 OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) OX=379508 GN=DBP2 PE=3 SV=1 Length=552 Score = 35.4 bits (80), Expect = 2.1, Method: Compositional matrix adjust. Identities = 28/115 (24%), Positives = 55/115 (48%), Gaps = 15/115 (13%) Query 347 ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA 406 E K ++L K L+ + SNS + ++F T+++ + +L+ G + I Sbjct 344 EYQKRDLLVKHLESALADSNS-KVLVFASTKRTCDEVTSYLRAD-GWPALAIHGD----- 396 Query 407 GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN 461 Q ++ V+++F+ G+ +++VAT VA G+D+ VV Y + N Sbjct 397 --------KEQHERDWVLKEFRQGSHSIMVATDVAARGIDVKGITHVVNYDMPGN 443 >sp|Q9FT69|RQSIM_ARATH ATP-dependent DNA helicase Q-like SIM OS=Arabidopsis thaliana OX=3702 GN=RECQSIM PE=2 SV=1 Length=858 Score = 35.4 bits (80), Expect = 2.2, Method: Compositional matrix adjust. Identities = 24/84 (29%), Positives = 44/84 (52%), Gaps = 3/84 (4%) Query 394 QTVDIRAQLLIGAG--NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN 451 ++V+I A+ L G G ++ + + ++ ++V Q F D L ++VAT G+D + Sbjct 509 ESVNI-AKYLCGVGLKAAAYNASLPKKHLRQVHQDFHDNKLQVVVATIAFGMGIDKKNVR 567 Query 452 VVVRYGLLTNEISMVQARGRARAD 475 ++ YG L + + Q GRA D Sbjct 568 KIIHYGWLQSLEAYYQEAGRAGRD 591 >sp|Q7S9J4|DBP10_NEUCR ATP-dependent RNA helicase dbp-10 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=dbp-10 PE=3 SV=1 Length=934 Score = 35.4 bits (80), Expect = 2.2, Method: Compositional matrix adjust. Identities = 20/59 (34%), Positives = 30/59 (51%), Gaps = 1/59 (2%) Query 424 IQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF 481 + F+ G ++LV T VA G+D+P V+ Y + V GR ARA Q +A+ Sbjct 417 VDNFRRGRTHILVVTDVAARGIDMPALANVINYDFPSQPKIFVHRVGRTARAGQRGWAY 475 >sp|Q9U2G0|U520_CAEEL U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Caenorhabditis elegans OX=6239 GN=snrp-200 PE=3 SV=1 Length=2145 Score = 35.4 bits (80), Expect = 2.2, Method: Compositional matrix adjust. Identities = 20/69 (29%), Positives = 34/69 (49%), Gaps = 2/69 (3%) Query 17 GKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRW- 75 +N+I+ P G+GKT A RH E AK V + + T+ +++R L+ Sbjct 1337 NENVIVCAPNGSGKTAIAELAVLRHFENTPEAKAVYITPMEDMATKVYADWKRRLEPAIG 1396 Query 76 -TVTTLSGD 83 T+ L+G+ Sbjct 1397 HTIVLLTGE 1405 >sp|Q86TM3|DDX53_HUMAN Probable ATP-dependent RNA helicase DDX53 OS=Homo sapiens OX=9606 GN=DDX53 PE=1 SV=3 Length=631 Score = 35.4 bits (80), Expect = 2.2, Method: Compositional matrix adjust. Identities = 17/57 (30%), Positives = 28/57 (49%), Gaps = 2/57 (4%) Query 407 GNSSQSTHMT--QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN 461 G S++S H Q DQ+ ++ F+ G + +L+ T + GLD+ V Y N Sbjct 491 GISAESLHGNSEQSDQERAVEDFKSGNIKILITTDIVSRGLDLNDVTHVYNYDFPRN 547 >sp|Q8KC79|UVRB_CHLTE UvrABC system protein B OS=Chlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS) OX=194439 GN=uvrB PE=3 SV=1 Length=684 Score = 35.4 bits (80), Expect = 2.2, Method: Compositional matrix adjust. Identities = 26/99 (26%), Positives = 53/99 (54%), Gaps = 9/99 (9%) Query 407 GNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLL 459 G SQ H + ++ +++++ + G + +LV ++ EGLD+P +V + G L Sbjct 476 GLRSQYLHSEIKSLERMQILRELRAGDIEVLVGVNLLREGLDLPEVALVAILDADKEGFL 535 Query 460 TNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE 497 + S++Q GR AR + + F A + + + RE+++E Sbjct 536 RDATSLMQIAGRAARNVEGLVLFYADKITDSM-REVLDE 573 >sp|Q8SRB2|DBP2_ENCCU ATP-dependent RNA helicase DBP2 OS=Encephalitozoon cuniculi (strain GB-M1) OX=284813 GN=DBP2 PE=3 SV=1 Length=495 Score = 35.0 bits (79), Expect = 2.3, Method: Compositional matrix adjust. Identities = 23/94 (24%), Positives = 42/94 (45%), Gaps = 3/94 (3%) Query 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY---GLLTN 461 G G ++ +Q + +V+ F+ G +L+AT VA GLD+ +V+ + G + Sbjct 355 GYGAAALHGDKSQNIRDKVLDDFRSGRRPILIATEVAGRGLDVNDVKLVINFDFPGSCED 414 Query 462 EISMVQARGRARADQSVYAFVATEGSRELKRELI 495 + + R + + T G + RELI Sbjct 415 YVHRIGRTARGNTKEGISHTFFTVGDKANARELI 448 >sp|Q72BN0|UVRB_NITV2 UvrABC system protein B OS=Nitratidesulfovibrio vulgaris (strain ATCC 29579 / DSM 644 / CCUG 34227 / NCIMB 8303 / VKM B-1760 / Hildenborough) OX=882 GN=uvrB PE=3 SV=1 Length=677 Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust. Identities = 19/55 (35%), Positives = 31/55 (56%), Gaps = 5/55 (9%) Query 423 VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 +IQ + G ++LV ++ EGLDIP ++V + G L + S++Q GRA Sbjct 489 IIQALRRGECDVLVGINLLREGLDIPEVSLVSILDADKEGFLRSTGSLIQTFGRA 543 >sp|Q6C7X8|DBP10_YARLI ATP-dependent RNA helicase DBP10 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DBP10 PE=3 SV=1 Length=926 Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR 473 + Q ++ + +F+ G ++LV T VA G+D+P V+ Y L + + GR AR Sbjct 426 LDQHARKNQLYRFRTGKTSILVVTDVAARGIDVPVLANVINYSLPPSPKVFIHRVGRTAR 485 Query 474 ADQSVYAF 481 A +A+ Sbjct 486 AGNRGWAY 493 >sp|A1VDN0|UVRB_NITV4 UvrABC system protein B OS=Nitratidesulfovibrio vulgaris (strain DP4) OX=391774 GN=uvrB PE=3 SV=1 Length=677 Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust. Identities = 19/55 (35%), Positives = 31/55 (56%), Gaps = 5/55 (9%) Query 423 VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 +IQ + G ++LV ++ EGLDIP ++V + G L + S++Q GRA Sbjct 489 IIQALRRGECDVLVGINLLREGLDIPEVSLVSILDADKEGFLRSTGSLIQTFGRA 543 >sp|Q99PT0|DDX52_RAT Probable ATP-dependent RNA helicase DDX52 OS=Rattus norvegicus OX=10116 GN=Ddx52 PE=2 SV=1 Length=598 Score = 35.0 bits (79), Expect = 2.4, Method: Compositional matrix adjust. Identities = 22/83 (27%), Positives = 39/83 (47%), Gaps = 2/83 (2%) Query 416 TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA 474 TQ+ + + F+ G + +L+ T++ G+D N+V+ Y T+ + + GR RA Sbjct 448 TQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRA 507 Query 475 DQSVYAFV-ATEGSRELKRELIN 496 A TE + L R + N Sbjct 508 GNRGKAVTFFTEDDKPLLRSVAN 530 >sp|Q83NI7|UVRB_TROW8 UvrABC system protein B OS=Tropheryma whipplei (strain TW08/27) OX=218496 GN=uvrB PE=3 SV=1 Length=677 Score = 35.0 bits (79), Expect = 2.4, Method: Compositional matrix adjust. Identities = 30/126 (24%), Positives = 58/126 (46%), Gaps = 22/126 (17%) Query 352 EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ 411 ++LE+I +R+ S R ++ T T++ A L +L + G S Sbjct 437 DLLEEIRKRKLLSE---RVLVTTLTKRMAEELTDFLSEA--------------GVNVSYL 479 Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMV 466 + + + E++ + G +++LV ++ EGLD+P ++V + G L + S + Sbjct 480 HSDIDTLHRVELLTSLRMGRIDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSFI 539 Query 467 QARGRA 472 Q GRA Sbjct 540 QTIGRA 545 >sp|P94846|UVRB_HELPY UvrABC system protein B OS=Helicobacter pylori (strain ATCC 700392 / 26695) OX=85962 GN=uvrB PE=3 SV=2 Length=658 Score = 35.0 bits (79), Expect = 2.4, Method: Compositional matrix adjust. Identities = 16/59 (27%), Positives = 33/59 (56%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ +I+ + ++L+ ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 486 ERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQTMGRA 544 >sp|Q6NZQ2|DDX31_MOUSE ATP-dependent DNA helicase DDX31 OS=Mus musculus OX=10090 GN=Ddx31 PE=2 SV=2 Length=687 Score = 35.0 bits (79), Expect = 2.5, Method: Compositional matrix adjust. Identities = 16/58 (28%), Positives = 28/58 (48%), Gaps = 0/58 (0%) Query 414 HMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 +M Q ++ V +F +L+ T VA GLD+P +V+Y ++ + GR Sbjct 425 NMEQEERTSVFHEFSHSETGVLLCTDVASRGLDLPQVTWIVQYSAPSSPAEYIHRIGR 482 >sp|Q71XF3|DCUP_LISMF Uroporphyrinogen decarboxylase OS=Listeria monocytogenes serotype 4b (strain F2365) OX=265669 GN=hemE PE=3 SV=1 Length=353 Score = 35.0 bits (79), Expect = 2.5, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 4/61 (7%) Query 190 ANLDTWCIMSPQNCCPQ----LQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLE 245 NLD +++P+ C + LQE +P +NL H + ++LKKL + IH+ E Sbjct 285 GNLDPSTLLAPEKCLKEANRILQEGVLEPGYIFNLGHGVFPEVPPEMLKKLTNYIHERSE 344 Query 246 M 246 + Sbjct 345 I 345 >sp|Q1CSF2|UVRB_HELPH UvrABC system protein B OS=Helicobacter pylori (strain HPAG1) OX=357544 GN=uvrB PE=3 SV=1 Length=658 Score = 35.0 bits (79), Expect = 2.5, Method: Compositional matrix adjust. Identities = 16/59 (27%), Positives = 33/59 (56%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ +I+ + ++L+ ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 486 ERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQTMGRA 544 >sp|O26066|MFD_HELPY Transcription-repair-coupling factor OS=Helicobacter pylori (strain ATCC 700392 / 26695) OX=85962 GN=mfd PE=3 SV=1 Length=999 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 20/93 (22%), Positives = 43/93 (46%), Gaps = 10/93 (11%) Query 413 THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQ 467 + + + +E++ +F G +L+ TS+ E G+ +P+ N ++ +GL + Q Sbjct 723 SQINANESEEIMLEFAKGNYQVLLCTSIVESGIHLPNANTIIIDNAQNFGL----ADLHQ 778 Query 468 ARGR-ARADQSVYAFVATEGSRELKRELINEAL 499 RGR R + + + E + L + + L Sbjct 779 LRGRVGRGKKEGFCYFLIEDQKSLNEQALKRLL 811 >sp|C1KXG7|DCUP_LISMC Uroporphyrinogen decarboxylase OS=Listeria monocytogenes serotype 4b (strain CLIP80459) OX=568819 GN=hemE PE=3 SV=1 Length=353 Score = 34.7 bits (78), Expect = 2.5, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 4/61 (7%) Query 190 ANLDTWCIMSPQNCCPQ----LQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLE 245 NLD +++P+ C + LQE +P +NL H + ++LKKL + IH+ E Sbjct 285 GNLDPSTLLAPEKCLKEANRILQEGVLEPGYIFNLGHGVFPEVPPEMLKKLTNYIHERSE 344 Query 246 M 246 + Sbjct 345 I 345 >sp|B8G8R1|UVRB_CHLAD UvrABC system protein B OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) OX=326427 GN=uvrB PE=3 SV=1 Length=664 Score = 35.0 bits (79), Expect = 2.5, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+++ + G +++V ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 483 EILRDLRLGVYDVVVGINLLREGLDLPEVSLVAILDADKEGYLRSETSLIQIIGRA 538 >sp|C1A4H0|UVRB_GEMAT UvrABC system protein B OS=Gemmatimonas aurantiaca (strain DSM 14586 / JCM 11422 / NBRC 100505 / T-27) OX=379066 GN=uvrB PE=3 SV=1 Length=700 Score = 35.0 bits (79), Expect = 2.6, Method: Compositional matrix adjust. Identities = 17/59 (29%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E+++ + G ++LV ++ EGLD+P ++V + G L ++ S++Q GRA Sbjct 483 ERMEIVRGLRLGEFDVLVGINLLREGLDMPEVSLVAILDADQEGFLRSDRSLIQTIGRA 541 >sp|Q9HPZ2|RAD25_HALSA Putative DNA 3'-5' helicase Rad25 OS=Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) OX=64091 GN=rad25 PE=3 SV=2 Length=600 Score = 35.0 bits (79), Expect = 2.6, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 9/86 (10%) Query 407 GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN-VVVRYGLLTNEISM 465 G + S T DQ F+ G L+ LV + + +EG+D+P VV GL + Sbjct 494 GETPHSRRETHFDQ------FRTGALDALVVSRIGDEGIDLPDAEFAVVASGLGGSRRQG 547 Query 466 VQARGRAR--ADQSVYAFVATEGSRE 489 Q GR QS+ +AT G+ E Sbjct 548 AQRAGRTMRPGSQSLLFVLATRGTEE 573 >sp|Q9UMR2|DD19B_HUMAN ATP-dependent RNA helicase DDX19B OS=Homo sapiens OX=9606 GN=DDX19B PE=1 SV=1 Length=479 Score = 35.0 bits (79), Expect = 2.6, Method: Compositional matrix adjust. Identities = 22/90 (24%), Positives = 45/90 (50%), Gaps = 14/90 (16%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 + +IF TR++A L L ++ G Q + ++++ + VI++F+ Sbjct 335 QAMIFCHTRKTASWLAAELSKE-GHQVALLSGEMMV-------------EQRAAVIERFR 380 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGL 458 +G +LV T+V G+D+ +VV+ + L Sbjct 381 EGKEKVLVTTNVCARGIDVEQVSVVINFDL 410 >sp|Q73MY7|UVRB_TREDE UvrABC system protein B OS=Treponema denticola (strain ATCC 35405 / DSM 14222 / CIP 103919 / JCM 8153 / KCTC 15104) OX=243275 GN=uvrB PE=3 SV=1 Length=662 Score = 35.0 bits (79), Expect = 2.6, Method: Compositional matrix adjust. Identities = 25/115 (22%), Positives = 54/115 (47%), Gaps = 11/115 (10%) Query 370 GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKF 427 G + R + SL+L L ++ D L G G + H + ++ E+++ Sbjct 434 GEVKKRIALNERSLILTLTKKMAEDLTD----YLTGLGLKVKYIHSEVETIERVEILKGL 489 Query 428 QDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRARADQS 477 + G ++L+ ++ EG+D+P + + + G L + S++Q GRA +++ Sbjct 490 RAGEFDVLIGINLLREGIDLPEVSFIGILDADKIGFLRSTTSLIQIVGRAARNEN 544 >sp|Q9M2E0|RH12_ARATH DEAD-box ATP-dependent RNA helicase 12 OS=Arabidopsis thaliana OX=3702 GN=RH12 PE=2 SV=1 Length=498 Score = 35.0 bits (79), Expect = 2.7, Method: Compositional matrix adjust. Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 11/111 (10%) Query 373 FTRTRQSAH---SLLLWLQQQQGL------QTVDIRAQLLIGAGNSSQSTH--MTQRDQQ 421 F RQ H +L LQ Q + V++ A+ + G S H M Q + Sbjct 342 FVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRN 401 Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA 472 V +F++G LV T + G+DI NVV+ + S + GR+ Sbjct 402 RVFHEFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRS 452 >sp|Q6BRE4|DBP5_DEBHA ATP-dependent RNA helicase DBP5 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DBP5 PE=3 SV=1 Length=493 Score = 35.0 bits (79), Expect = 2.7, Method: Compositional matrix adjust. Identities = 24/89 (27%), Positives = 46/89 (52%), Gaps = 14/89 (16%) Query 370 GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD 429 IIF +T+ +A+ +L +++G + + A L ++RD+ +I F++ Sbjct 344 SIIFVKTKDTAN-ILYAKMKKEGHKCSILHAGL-----------ETSERDR--LIDDFRE 389 Query 430 GTLNLLVATSVAEEGLDIPHCNVVVRYGL 458 G +L+ T+V G+DI ++VV Y L Sbjct 390 GRSKVLITTNVLARGIDIASVSMVVNYDL 418 >sp|Q9ZJ57|MFD_HELPJ Transcription-repair-coupling factor OS=Helicobacter pylori (strain J99 / ATCC 700824) OX=85963 GN=mfd PE=3 SV=1 Length=1001 Score = 35.0 bits (79), Expect = 2.7, Method: Compositional matrix adjust. Identities = 20/93 (22%), Positives = 43/93 (46%), Gaps = 10/93 (11%) Query 413 THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQ 467 + + + +E++ +F G +L+ TS+ E G+ +P+ N ++ +GL + Q Sbjct 725 SQINANESEEIMLEFAKGNYQVLLCTSIVESGIHLPNANTIIIDNAQNFGL----ADLHQ 780 Query 468 ARGR-ARADQSVYAFVATEGSRELKRELINEAL 499 RGR R + + + E + L + + L Sbjct 781 LRGRVGRGKKEGFCYFLIEDQKSLNEQALKRLL 813 >sp|Q95YF3|CGH1_CAEEL ATP-dependent RNA helicase cgh-1 OS=Caenorhabditis elegans OX=6239 GN=cgh-1 PE=1 SV=1 Length=430 Score = 35.0 bits (79), Expect = 2.7, Method: Compositional matrix adjust. Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 11/111 (10%) Query 373 FTRTRQSAH---SLLLWLQQQQGL------QTVDIRAQLLIGAGNSSQSTH--MTQRDQQ 421 F + +Q H +L LQ Q + Q V++ A+ + G S H M Q + Sbjct 261 FVQEKQKVHCLNTLFRKLQINQSIIFCNSTQRVELLAKKITEIGYSCYYIHSKMAQNHRN 320 Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA 472 V F+ G LV + + G+DI NVV+ + N + + GR+ Sbjct 321 RVFHDFRQGNCRNLVCSDLLTRGIDIQAVNVVINFDFPRNAETYLHRIGRS 371 >sp|Q042E2|UVRB_LACGA UvrABC system protein B OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243 / BCRC 14619 / CIP 102991 / JCM 1131 / KCTC 3163 / NCIMB 11718 / NCTC 13722 / AM63) OX=324831 GN=uvrB PE=3 SV=1 Length=671 Score = 35.0 bits (79), Expect = 2.7, Method: Compositional matrix adjust. Identities = 32/141 (23%), Positives = 57/141 (40%), Gaps = 25/141 (18%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRAR--- 473 E+I+ + G ++L+ ++ EG+D+P ++V + G L + +VQ GRA Sbjct 491 EIIRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRSTRPLVQTIGRAARNS 550 Query 474 -----------ADQSVYAFVATEGSRELKRELINE------ALETLMEQAVAAVQKMDQA 516 D A ATE R L+ + E + + ++ + D+ Sbjct 551 NGKVIMYADSITDSMREAIDATERRRSLQMKFNKEHGITPKTIVKPIRDVISITKDSDEK 610 Query 517 EYQAKIRDLQQAALTKRAAQA 537 E + DL LTK+ Q Sbjct 611 ENKESFADLNFDELTKKQKQT 631 >sp|P41381|IF4A8_TOBAC Eukaryotic initiation factor 4A-8 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 Length=413 Score = 34.7 bits (78), Expect = 2.7, Method: Compositional matrix adjust. Identities = 30/125 (24%), Positives = 56/125 (45%), Gaps = 21/125 (17%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQ 428 +IF TR+ WL + ++T D ++ +TH M Q + ++++F+ Sbjct 283 VIFVNTRRKVD----WLTDK--MRTRD----------HTVSATHGDMDQNTRDIIMREFR 326 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT---NEISMVQARGRARADQSVYAFVATE 485 G+ +L+ T + G+D+ ++V+ Y L T N + + GR FV T+ Sbjct 327 SGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTD 386 Query 486 GSREL 490 R L Sbjct 387 DERML 391 >sp|Q27268|DX39B_DROME ATP-dependent RNA helicase WM6 OS=Drosophila melanogaster OX=7227 GN=Hel25E PE=1 SV=1 Length=424 Score = 34.7 bits (78), Expect = 2.8, Method: Compositional matrix adjust. Identities = 23/83 (28%), Positives = 39/83 (47%), Gaps = 3/83 (4%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE---ISMVQARGR 471 MTQ ++ Q+F+D +LVAT++ G+DI N+V Y + + + V GR Sbjct 318 MTQEERLNRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGR 377 Query 472 ARADQSVYAFVATEGSRELKREL 494 FV+ E ++ E+ Sbjct 378 FGTKGLAITFVSDENDAKILNEV 400 >sp|Q9NUU7|DD19A_HUMAN ATP-dependent RNA helicase DDX19A OS=Homo sapiens OX=9606 GN=DDX19A PE=1 SV=1 Length=478 Score = 35.0 bits (79), Expect = 2.8, Method: Compositional matrix adjust. Identities = 22/90 (24%), Positives = 45/90 (50%), Gaps = 14/90 (16%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 + +IF TR++A L L ++ G Q + ++++ + VI++F+ Sbjct 334 QAMIFCHTRKTASWLAAELSKE-GHQVALLSGEMMV-------------EQRAAVIERFR 379 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGL 458 +G +LV T+V G+D+ +VV+ + L Sbjct 380 EGKEKVLVTTNVCARGIDVEQVSVVINFDL 409 >sp|Q61655|DD19A_MOUSE ATP-dependent RNA helicase DDX19A OS=Mus musculus OX=10090 GN=Ddx19a PE=1 SV=2 Length=478 Score = 34.7 bits (78), Expect = 2.9, Method: Compositional matrix adjust. Identities = 22/90 (24%), Positives = 45/90 (50%), Gaps = 14/90 (16%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 + +IF TR++A L L ++ G Q + ++++ + VI++F+ Sbjct 334 QAMIFCHTRKTASWLAAELSKE-GHQVALLSGEMMV-------------EQRAAVIERFR 379 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGL 458 +G +LV T+V G+D+ +VV+ + L Sbjct 380 EGKEKVLVTTNVCARGIDVEQVSVVINFDL 409 >sp|P24125|V51K_BPL79 51.5 kDa protein OS=Lactococcus phage (isolate 7-9) OX=12375 PE=4 SV=1 Length=452 Score = 34.7 bits (78), Expect = 2.9, Method: Compositional matrix adjust. Identities = 20/98 (20%), Positives = 46/98 (47%), Gaps = 14/98 (14%) Query 357 ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT 416 ++Q +N + I++ + +++ S Q+ G++ V + A+ T Sbjct 178 VVQEYVKHANGQKAILYAHSVEASQSFAKEFQEA-GIKAVHVDAK-----------TPKN 225 Query 417 QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV 454 +RD+ ++ F++G + +L + EG D+P C V + Sbjct 226 ERDK--LMLDFRNGRIKVLCNVDLISEGFDVPDCTVTI 261 >sp|Q887N8|RHLB_PSESM ATP-dependent RNA helicase RhlB OS=Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000) OX=223283 GN=rhlB PE=3 SV=1 Length=397 Score = 34.7 bits (78), Expect = 2.9, Method: Compositional matrix adjust. Identities = 26/97 (27%), Positives = 49/97 (51%), Gaps = 4/97 (4%) Query 398 IRAQLLIGAGNSSQ-STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY 456 I +L+ N++Q S + Q + + ++ F++G + +LVAT VA G+ I + V+ + Sbjct 272 IEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINF 331 Query 457 GL---LTNEISMVQARGRARADQSVYAFVATEGSREL 490 L + + + GRA AD +F + S +L Sbjct 332 TLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSYQL 368 >sp|A2QAX7|DRS1_ASPNC ATP-dependent RNA helicase drs1 OS=Aspergillus niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) OX=425011 GN=drs1 PE=3 SV=1 Length=824 Score = 35.0 bits (79), Expect = 2.9, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 42/88 (48%), Gaps = 17/88 (19%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 R I+F R ++ AH + + GL + ++A L G+ + QS ++ F+ Sbjct 556 RVIVFFRQKKEAHRVRIIF----GL--LGLKAAELHGSMSQEQS-----------VENFR 598 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRY 456 +G L+AT +A GLDI V+ Y Sbjct 599 EGKAAFLLATDLASRGLDIKGVETVINY 626 >sp|A7TGU7|DHH1_VANPO ATP-dependent RNA helicase DHH1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 GN=DHH1 PE=3 SV=1 Length=484 Score = 34.7 bits (78), Expect = 2.9, Method: Compositional matrix adjust. Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 11/111 (10%) Query 373 FTRTRQSAH---SLLLWLQQQQGL------QTVDIRAQLLIGAGNSSQSTH--MTQRDQQ 421 F +Q H +L LQ Q + V++ A+ + G S +H M Q+++ Sbjct 252 FVEEKQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERN 311 Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA 472 V +F+ G + LV + + G+DI NVV+ + + + GR+ Sbjct 312 RVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRS 362 >sp|O01836|GLH3_CAEEL ATP-dependent RNA helicase glh-3 OS=Caenorhabditis elegans OX=6239 GN=glh-3 PE=1 SV=1 Length=720 Score = 35.0 bits (79), Expect = 3.0, Method: Compositional matrix adjust. Identities = 17/55 (31%), Positives = 30/55 (55%), Gaps = 0/55 (0%) Query 417 QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 Q+++ ++ F+ G +L+AT+V E GLDI + V+ Y + N + GR Sbjct 599 QKERSAALKLFRSGAKPVLIATAVVERGLDIKGVDHVINYDMPNNIDDYIHRIGR 653 >sp|Q6FU81|MS116_CANGA ATP-dependent RNA helicase MSS116, mitochondrial OS=Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=MSS116 PE=3 SV=1 Length=666 Score = 35.0 bits (79), Expect = 3.0, Method: Compositional matrix adjust. Identities = 19/74 (26%), Positives = 36/74 (49%), Gaps = 3/74 (4%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGR 471 + Q+ + ++ +F+ LLV T V G+D P+ V++ GL + N I + R Sbjct 460 IDQKKRTRIVNEFKTMKKGLLVCTDVGARGMDFPNITEVLQIGLPSEIPNYIHRIGRTAR 519 Query 472 ARADQSVYAFVATE 485 + + S F++ E Sbjct 520 SGKEGSSVTFISKE 533 >sp|A1SAL1|RHLB_SHEAM ATP-dependent RNA helicase RhlB OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) OX=326297 GN=rhlB PE=3 SV=1 Length=439 Score = 34.7 bits (78), Expect = 3.0, Method: Compositional matrix adjust. Identities = 35/129 (27%), Positives = 54/129 (42%), Gaps = 15/129 (12%) Query 349 PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN 408 P +E K+L + I+F T+ +L W L+ R LL G Sbjct 238 PSMEDKLKLLHSLIEEDWPEKAIVFANTKYQCENL--W----ASLEADGHRVGLLTG--- 288 Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 + Q+ + +++++F L++LVAT VA GL I + V Y L + V Sbjct 289 -----DVPQKKRLKILEQFTQSELDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHR 343 Query 469 RGR-ARADQ 476 GR RA Q Sbjct 344 IGRTGRAGQ 352 >sp|A3BT52|RH29_ORYSJ DEAD-box ATP-dependent RNA helicase 29 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0416100 PE=2 SV=2 Length=851 Score = 35.0 bits (79), Expect = 3.0, Method: Compositional matrix adjust. Identities = 38/124 (31%), Positives = 54/124 (44%), Gaps = 17/124 (14%) Query 365 SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI 424 S+ + IIF T+ L + L +++GL+ L GA M Q + I Sbjct 290 SSEEQTIIFVSTKHHVEFLNI-LFREEGLE-----PSLSYGA--------MDQEARNIHI 335 Query 425 QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQS--VYAF 481 KF+ +L+ T VA GLDIP + VV + V GR AR +S Y F Sbjct 336 SKFRARKTMILIVTDVAARGLDIPLLDNVVNWDFPAKPKLFVHRVGRVARQGRSGTAYTF 395 Query 482 VATE 485 V +E Sbjct 396 VTSE 399 >sp|A7TGW7|DBP10_VANPO ATP-dependent RNA helicase DBP10 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 GN=DBP10 PE=3 SV=1 Length=977 Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust. Identities = 20/56 (36%), Positives = 29/56 (52%), Gaps = 1/56 (2%) Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF 481 F+ G ++LV T VA G+DIP V+ Y L + + GR ARA +A+ Sbjct 464 FRAGLTSILVVTDVAARGVDIPMLANVINYSLPASSKIFIHRVGRTARAGNRGWAY 519 >sp|Q6FNA2|DBP10_CANGA ATP-dependent RNA helicase DBP10 OS=Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DBP10 PE=3 SV=1 Length=969 Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR 473 + Q ++ + F+ G ++LV T VA G+DIP VV Y L + + GR AR Sbjct 441 LDQHARKSQLYNFRIGLTSILVVTDVAARGVDIPMLANVVNYSLPASSKIFIHRVGRTAR 500 Query 474 ADQSVYAF 481 A +A+ Sbjct 501 AGNRGWAY 508 >sp|Q9Z7A5|UVRB_CHLPN UvrABC system protein B OS=Chlamydia pneumoniae OX=83558 GN=uvrB PE=3 SV=1 Length=657 Score = 34.7 bits (78), Expect = 3.1, Method: Compositional matrix adjust. Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 6/82 (7%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGR-A 472 ++ +++ + G +++L+ ++ EGLD+P ++V + G L + S++Q GR A Sbjct 480 ERTQILTDLRSGVIDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSTSSLIQFCGRAA 539 Query 473 RADQSVYAFVATEGSRELKREL 494 R F A + +R ++ L Sbjct 540 RNINGKVIFYADQKTRSIEETL 561 >sp|Q17YL7|UVRB_HELAH UvrABC system protein B OS=Helicobacter acinonychis (strain Sheeba) OX=382638 GN=uvrB PE=3 SV=1 Length=658 Score = 34.7 bits (78), Expect = 3.1, Method: Compositional matrix adjust. Identities = 16/59 (27%), Positives = 33/59 (56%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ +I+ + ++L+ ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 486 ERNHIIRSLRLKEFDVLIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQTMGRA 544 >sp|Q5BCI0|MAK5_EMENI ATP-dependent RNA helicase mak5 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=mak5 PE=3 SV=1 Length=770 Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 36/74 (49%), Gaps = 4/74 (5%) Query 413 THMTQRDQQEVIQKFQDGTLN---LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + M Q+ + +++F T N +LVAT VA GLDI + V+ Y + V Sbjct 531 SSMAQKARLRSVERFSSSTANPGTILVATDVAARGLDIKGIDFVIHYHAPRTADTYVHRS 590 Query 470 GR-ARADQSVYAFV 482 GR ARA S + + Sbjct 591 GRTARAGASGKSVI 604 >sp|Q747K3|UVRB_GEOSL UvrABC system protein B OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) OX=243231 GN=uvrB PE=3 SV=1 Length=664 Score = 34.7 bits (78), Expect = 3.1, Method: Compositional matrix adjust. Identities = 18/58 (31%), Positives = 33/58 (57%), Gaps = 5/58 (9%) Query 420 QQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 + ++I+ + G ++LV ++ EGLDIP ++V + G L + S++Q GRA Sbjct 484 RMQIIRDLRMGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSARSLIQTCGRA 541 >sp|A1BI09|UVRB_CHLPD UvrABC system protein B OS=Chlorobium phaeobacteroides (strain DSM 266 / SMG 266 / 2430) OX=290317 GN=uvrB PE=3 SV=1 Length=685 Score = 34.7 bits (78), Expect = 3.2, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 +++++ + G + +LV ++ EGLD+P ++V + G L N S++Q GRA Sbjct 491 QILRELRAGDVEVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNTRSLMQIAGRA 546 >sp|Q3ZBV2|DD19A_BOVIN ATP-dependent RNA helicase DDX19A OS=Bos taurus OX=9913 GN=DDX19A PE=2 SV=1 Length=478 Score = 34.7 bits (78), Expect = 3.2, Method: Compositional matrix adjust. Identities = 26/90 (29%), Positives = 44/90 (49%), Gaps = 14/90 (16%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 + +IF TR++A L L ++ G Q LL G M + VI++F+ Sbjct 334 QAMIFCHTRKTASWLAAELSKE-GHQVA-----LLSG--------EMVVEQRAAVIERFR 379 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGL 458 +G +LV T+V G+D+ +VV+ + L Sbjct 380 EGKEKVLVTTNVCARGIDVEQVSVVINFDL 409 >sp|Q40469|IF4A6_TOBAC Eukaryotic initiation factor 4A-6 (Fragment) OS=Nicotiana tabacum OX=4097 PE=2 SV=1 Length=253 Score = 34.3 bits (77), Expect = 3.2, Method: Compositional matrix adjust. Identities = 23/105 (22%), Positives = 48/105 (46%), Gaps = 18/105 (17%) Query 370 GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKF 427 +IF TR+ WL + + G ++ +TH M Q + ++++F Sbjct 123 SVIFVNTRRKVD----WLTDK------------MRGRDHTVSATHGDMDQNTRDIIMREF 166 Query 428 QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA 472 + G+ +L+ T + G+D+ ++V+ Y L T + + GR+ Sbjct 167 RSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRS 211 >sp|Q2UST1|MS116_ASPOR ATP-dependent RNA helicase mss116, mitochondrial OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=mss116 PE=3 SV=1 Length=633 Score = 34.7 bits (78), Expect = 3.2, Method: Compositional matrix adjust. Identities = 18/71 (25%), Positives = 36/71 (51%), Gaps = 1/71 (1%) Query 413 THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR- 471 + ++Q + + F++ ++ A+ V G+D P+ ++V++ GL +N V GR Sbjct 384 SRLSQSARTKTTALFKEAATGIMFASDVIGRGMDFPNVDLVIQVGLPSNGEQYVHRVGRT 443 Query 472 ARADQSVYAFV 482 ARA A + Sbjct 444 ARAGNDGRAII 454 >sp|A2YV85|RH29_ORYSI DEAD-box ATP-dependent RNA helicase 29 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_028228 PE=2 SV=2 Length=851 Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 61/139 (44%), Gaps = 19/139 (14%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 KL L +++ + SS + IIF T+ L + L +++GL+ L GA Sbjct 277 KLAALLYLVRERISSEE--QTIIFVSTKHHVEFLNI-LFREEGLE-----PSLSYGA--- 325 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 M Q + I KF+ +L+ T VA GLDIP + VV + V Sbjct 326 -----MDQEARNIHISKFRARKTMILIVTDVAARGLDIPLLDNVVNWDFPAKPKLFVHRV 380 Query 470 GR-ARADQS--VYAFVATE 485 GR AR +S Y FV +E Sbjct 381 GRVARQGRSGTAYTFVTSE 399 >sp|A5DL80|DBP2_PICGU ATP-dependent RNA helicase DBP2 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DBP2 PE=3 SV=3 Length=554 Score = 34.7 bits (78), Expect = 3.2, Method: Compositional matrix adjust. Identities = 30/112 (27%), Positives = 57/112 (51%), Gaps = 9/112 (8%) Query 417 QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARAD 475 Q ++ V+++F+ G ++VAT VA G+D+ + V+ Y + N V GR RA Sbjct 408 QNERDWVLREFKTGKSPIMVATDVAARGIDVKGISYVINYDMPGNIEDYVHRIGRTGRAG 467 Query 476 QSVYAF-VATEGSRELKREL---INEALETLMEQAVAAVQKMDQAEYQAKIR 523 + A + TE + +L +L + EA +T+ + + + D+ + + IR Sbjct 468 TTGTAVSLFTEANSKLGGDLCKIMREANQTVPPELL----RYDRRSFGSHIR 515 >sp|A5DZX2|DBP5_LODEL ATP-dependent RNA helicase DBP5 OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) OX=379508 GN=DBP5 PE=3 SV=1 Length=511 Score = 34.7 bits (78), Expect = 3.3, Method: Compositional matrix adjust. Identities = 26/88 (30%), Positives = 43/88 (49%), Gaps = 14/88 (16%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 IIF + +A SL L ++++ TV I L G + D+ +I F++G Sbjct 358 IIFVEQKATADSLYLRMKEEG--HTVSI----LHGG--------LEVADRDRLIDDFREG 403 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGL 458 +L+ T+V G+DI ++VV Y L Sbjct 404 RSKVLITTNVLARGIDIATVSMVVNYDL 431 >sp|Q8L4E9|RH36_ORYSJ DEAD-box ATP-dependent RNA helicase 36 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0633500 PE=3 SV=1 Length=501 Score = 34.7 bits (78), Expect = 3.3, Method: Compositional matrix adjust. Identities = 43/195 (22%), Positives = 80/195 (41%), Gaps = 27/195 (14%) Query 336 NELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQT 395 + L L H P + K E+ L + + N I+F T ++ L L++ Sbjct 291 DTLKQLYIHVPPDAK-ELYLFYLLSKMNEDNIRSVIVFVSTCRTCQYLDFLLEE------ 343 Query 396 VDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVR 455 +G S +H Q + + F+ + +L+AT VA GLDI ++V+ Sbjct 344 --------LGHPAVSLHSHKPQSRRLAALHNFKSSKVPVLLATDVASRGLDIQTVDLVIN 395 Query 456 YGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMD 514 Y + + GR ARA + + R+++ L++E + + +Q A Sbjct 396 YDVPRYPRDYIHRVGRTARATRGGLSISFITTQRDIR--LLHEIEDVVGKQLGA------ 447 Query 515 QAEYQAKIRDLQQAA 529 Y ++RD+ + A Sbjct 448 ---YDGEMRDVNKDA 459 >sp|Q9ZKA0|UVRB_HELPJ UvrABC system protein B OS=Helicobacter pylori (strain J99 / ATCC 700824) OX=85963 GN=uvrB PE=3 SV=1 Length=658 Score = 34.7 bits (78), Expect = 3.3, Method: Compositional matrix adjust. Identities = 16/59 (27%), Positives = 33/59 (56%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ +I+ + ++L+ ++ EGLD+P ++V + G L +E S++Q GRA Sbjct 486 ERNHIIRSLRLKEFDVLIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQTMGRA 544 >sp|Q94BV4|RH6_ARATH DEAD-box ATP-dependent RNA helicase 6 OS=Arabidopsis thaliana OX=3702 GN=RH6 PE=2 SV=2 Length=528 Score = 34.7 bits (78), Expect = 3.3, Method: Compositional matrix adjust. Identities = 30/111 (27%), Positives = 45/111 (41%), Gaps = 11/111 (10%) Query 373 FTRTRQSAH---SLLLWLQQQQGL------QTVDIRAQLLIGAGNSSQSTH--MTQRDQQ 421 F RQ H +L LQ Q + V++ A+ + G S H M Q + Sbjct 372 FVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRN 431 Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA 472 V F++G LV T + G+DI NVV+ + S + GR+ Sbjct 432 RVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRS 482 >sp|Q54BD6|DDX51_DICDI Probable ATP-dependent RNA helicase ddx51 OS=Dictyostelium discoideum OX=44689 GN=ddx51 PE=3 SV=1 Length=563 Score = 34.7 bits (78), Expect = 3.3, Method: Compositional matrix adjust. Identities = 28/152 (18%), Positives = 67/152 (44%), Gaps = 12/152 (8%) Query 340 HLATHGPENPKLEM---LEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTV 396 ++ ++G + P + + E +L+ + N + I FT++ H L L+ + + Sbjct 296 YIISNGDQKPLVLLNIIYESLLKNNANGENKKKIICFTKSVDITHRLNTLLKLIGQVDKL 355 Query 397 DIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY 456 + S+ ++ ++ +++ +F+ +++L+ + + G+DI +VV+ Y Sbjct 356 KFTCE--------EYSSSLSTVERADLLSRFKLNQIDILICSDIMSRGMDIQDIDVVINY 407 Query 457 GLLTNEISMVQARGR-ARADQSVYAFVATEGS 487 N V GR ARA ++ + S Sbjct 408 NTPPNITLYVHRVGRTARAGNFGVSYTIVDKS 439 >sp|B4GEU5|SPNE_DROPE Probable ATP-dependent RNA helicase spindle-E OS=Drosophila persimilis OX=7234 GN=spn-E PE=3 SV=1 Length=1434 Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust. Identities = 14/44 (32%), Positives = 26/44 (59%), Gaps = 0/44 (0%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL 458 MT DQ+E+ Q G +++AT+VAE + +P + ++ + L Sbjct 407 MTSEDQREIFQPSPPGYRKIIMATNVAESSITVPDVSYIIDFCL 450 >sp|Q6CWQ5|MRH4_KLULA ATP-dependent RNA helicase MRH4, mitochondrial OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=MRH4 PE=3 SV=1 Length=584 Score = 34.7 bits (78), Expect = 3.4, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 31/65 (48%), Gaps = 2/65 (3%) Query 425 QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVA 483 + F + TL +LV T V G++ C VV Y + + +V GR R +Q F+ Sbjct 502 EAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKGSVFII 561 Query 484 TEGSR 488 T G R Sbjct 562 T-GKR 565 >sp|O34750|YFML_BACSU Probable ATP-dependent RNA helicase YfmL OS=Bacillus subtilis (strain 168) OX=224308 GN=yfmL PE=1 SV=1 Length=376 Score = 34.3 bits (77), Expect = 3.4, Method: Compositional matrix adjust. Identities = 23/77 (30%), Positives = 40/77 (52%), Gaps = 4/77 (5%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR---GRARAD 475 ++ ++I F+DG LL+AT +A GLDI + V+ + + +E V GRA + Sbjct 279 ERAKIIATFEDGEFPLLLATDIAARGLDIENLPYVI-HADIPDEDGYVHRSGRTGRAGKE 337 Query 476 QSVYAFVATEGSRELKR 492 +V + V +LK+ Sbjct 338 GNVLSLVTKLEESKLKK 354 >sp|P40724|RECQ_SALTY ATP-dependent DNA helicase RecQ OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=recQ PE=3 SV=3 Length=609 Score = 34.7 bits (78), Expect = 3.4, Method: Compositional matrix adjust. Identities = 37/155 (24%), Positives = 59/155 (38%), Gaps = 23/155 (15%) Query 326 RLLALFDDRKNELAHLATHGPENPKLEMLEKI-----LQRQFSSSNSPRGIIFTRTRQSA 380 RLL L D L +++ N + ++EK L R GII+ +R Sbjct 194 RLLGLND----PLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKV 249 Query 381 HSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSV 440 LQ + G ++ + + +V +KFQ L ++VAT Sbjct 250 EDTAARLQSR--------------GISAAAYHAGLENAIRVDVQEKFQRDDLQIVVATVA 295 Query 441 AEEGLDIPHCNVVVRYGLLTNEISMVQARGRARAD 475 G++ P+ VV + + N S Q GRA D Sbjct 296 FGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRD 330 >sp|Q9VVK8|DDX52_DROME Probable ATP-dependent RNA helicase DDX52 OS=Drosophila melanogaster OX=7227 GN=ais PE=1 SV=1 Length=594 Score = 34.7 bits (78), Expect = 3.5, Method: Compositional matrix adjust. Identities = 29/129 (22%), Positives = 59/129 (46%), Gaps = 16/129 (12%) Query 417 QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARAD 475 QRD ++ F++G++ +L+ T + G+D N+V+ Y IS + GR RA Sbjct 404 QRDN--CVKAFREGSIWVLICTELMGRGIDFKGVNLVINYDFPPTTISYIHRIGRTGRAG 461 Query 476 QSVYA--FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKR 533 + A F E + L+ + +++ + V EY +++ ++++ R Sbjct 462 RPGRAITFFTQEDTSNLR------GIALIIKNSGGTV-----PEYMLQMKKVRKSEAKMR 510 Query 534 AAQAAQREN 542 A + RE+ Sbjct 511 AKKPLDRED 519 >sp|A9WT85|UVRB_RENSM UvrABC system protein B OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / JCM 11484 / NBRC 15589 / NCIMB 2235) OX=288705 GN=uvrB PE=3 SV=1 Length=693 Score = 34.7 bits (78), Expect = 3.6, Method: Compositional matrix adjust. Identities = 22/79 (28%), Positives = 42/79 (53%), Gaps = 7/79 (9%) Query 401 QLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV---- 454 + L+G G Q H + + E++++ + G ++LV ++ EGLD+P ++V Sbjct 471 EYLLGHGVKVQYLHSDVDTLRRVELLRELRLGVFDVLVGINLLREGLDLPEVSLVSILDA 530 Query 455 -RYGLLTNEISMVQARGRA 472 + G L + S++Q GRA Sbjct 531 DKEGFLRSATSLIQTIGRA 549 >sp|Q2UMH8|DBP3_ASPOR ATP-dependent RNA helicase dbp3 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=dbp3 PE=3 SV=1 Length=498 Score = 34.7 bits (78), Expect = 3.6, Method: Compositional matrix adjust. Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 4/75 (5%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL-LTNE--ISMVQARGR 471 ++Q+++ + F+ G +LVAT VA GLDIP V+ LT E + + GR Sbjct 367 LSQQERFRSLDAFKTGAATVLVATDVAARGLDIPSVKQVINVTFPLTVEDYVHRIGRTGR 426 Query 472 ARAD-QSVYAFVATE 485 A A+ +V F T+ Sbjct 427 AGAEGHAVTLFTETD 441 >sp|Q829Y6|UVRB_STRAW UvrABC system protein B OS=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NBRC 14893 / NCIMB 12804 / NRRL 8165 / MA-4680) OX=227882 GN=uvrB PE=3 SV=1 Length=713 Score = 34.7 bits (78), Expect = 3.7, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E++++ + G ++LV ++ EGLD+P ++V + G L + S++Q GRA Sbjct 494 ELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRA 549 >sp|A5DB98|IF4A_PICGU ATP-dependent RNA helicase eIF4A OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=TIF1 PE=3 SV=1 Length=396 Score = 34.3 bits (77), Expect = 3.7, Method: Compositional matrix adjust. Identities = 13/48 (27%), Positives = 29/48 (60%), Gaps = 0/48 (0%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE 462 + Q D+ ++ +F+ G+ +L+AT + G+D+ ++V+ Y L N+ Sbjct 295 LPQSDRDTIMNEFRSGSSRILIATDLLARGIDVQQVSLVINYDLPANK 342 >sp|B2S264|UVRB_TREPS UvrABC system protein B OS=Treponema pallidum subsp. pallidum (strain SS14) OX=455434 GN=uvrB PE=3 SV=1 Length=668 Score = 34.7 bits (78), Expect = 3.7, Method: Compositional matrix adjust. Identities = 35/151 (23%), Positives = 64/151 (42%), Gaps = 34/151 (23%) Query 354 LEKILQR-QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQS 412 +E I QR + S+ + R ++ T T++ A L + G G ++ Sbjct 429 IEDICQRVKACSARNERSLVLTLTKKMAEDLTDYFN----------------GLGIRTKY 472 Query 413 TH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPH--------CNVVVRYGLLTNE 462 H + ++ E++ + G +LV ++ EG+D+P N+V G L + Sbjct 473 VHSEIETIERVEILTSLRAGECEVLVGINLLREGIDLPEVAFIAILDANIV---GFLRST 529 Query 463 ISMVQARGR----ARADQSVYAFVATEGSRE 489 S++Q GR AR +YA ++ RE Sbjct 530 TSLIQIIGRAARNARGTVVMYADAISDAMRE 560 >sp|O83154|UVRB_TREPA UvrABC system protein B OS=Treponema pallidum (strain Nichols) OX=243276 GN=uvrB PE=3 SV=1 Length=668 Score = 34.7 bits (78), Expect = 3.7, Method: Compositional matrix adjust. Identities = 35/151 (23%), Positives = 64/151 (42%), Gaps = 34/151 (23%) Query 354 LEKILQR-QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQS 412 +E I QR + S+ + R ++ T T++ A L + G G ++ Sbjct 429 IEDICQRVKACSARNERSLVLTLTKKMAEDLTDYFN----------------GLGIRTKY 472 Query 413 TH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPH--------CNVVVRYGLLTNE 462 H + ++ E++ + G +LV ++ EG+D+P N+V G L + Sbjct 473 VHSEIETIERVEILTSLRAGECEVLVGINLLREGIDLPEVAFIAILDANIV---GFLRST 529 Query 463 ISMVQARGR----ARADQSVYAFVATEGSRE 489 S++Q GR AR +YA ++ RE Sbjct 530 TSLIQIIGRAARNARGTVVMYADAISDAMRE 560 >sp|Q929G1|DCUP_LISIN Uroporphyrinogen decarboxylase OS=Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262) OX=272626 GN=hemE PE=3 SV=1 Length=350 Score = 34.3 bits (77), Expect = 3.7, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 31/61 (51%), Gaps = 4/61 (7%) Query 190 ANLDTWCIMSPQNCCPQ----LQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLE 245 NLD +++P+ C + LQE +P +NL H + ++LKKL IH+ E Sbjct 285 GNLDPSTLLAPEKCIAETERILQEGILEPGYIFNLGHGVFPEVPPEMLKKLTKYIHERSE 344 Query 246 M 246 + Sbjct 345 I 345 >sp|Q1RI82|MFD_RICBR Transcription-repair-coupling factor OS=Rickettsia bellii (strain RML369-C) OX=336407 GN=mfd PE=3 SV=1 Length=1120 Score = 34.7 bits (78), Expect = 3.8, Method: Compositional matrix adjust. Identities = 18/78 (23%), Positives = 39/78 (50%), Gaps = 2/78 (3%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN-VVVRYGLLTNEISMVQARGR-A 472 M+ E++ +F G ++L++T++ E G+DI N +++ + + Q RGR Sbjct 825 MSPNKIDEIMSEFYAGKFDILISTTIIESGIDIQDANTMIIHKADMLGLSQLYQLRGRIG 884 Query 473 RADQSVYAFVATEGSREL 490 R YA++ +++ Sbjct 885 RGKMRGYAYLTLPSHKKM 902 >sp|Q30ZK3|UVRB_OLEA2 UvrABC system protein B OS=Oleidesulfovibrio alaskensis (strain ATCC BAA-1058 / DSM 17464 / G20) OX=207559 GN=uvrB PE=3 SV=1 Length=682 Score = 34.7 bits (78), Expect = 3.8, Method: Compositional matrix adjust. Identities = 22/79 (28%), Positives = 40/79 (51%), Gaps = 7/79 (9%) Query 401 QLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV---- 454 + L G S++ H + ++ +IQ + ++LV ++ EGLDIP ++V Sbjct 465 EYLTSMGVSARYLHSDIDTMERMAIIQALRRKEFDVLVGINLLREGLDIPEVSLVAILDA 524 Query 455 -RYGLLTNEISMVQARGRA 472 + G L + S++Q GRA Sbjct 525 DKEGFLRSTGSLIQTFGRA 543 >sp|Q81DF9|CSHE_BACCR DEAD-box ATP-dependent RNA helicase CshE OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711) OX=226900 GN=cshE PE=2 SV=1 Length=458 Score = 34.3 bits (77), Expect = 3.9, Method: Compositional matrix adjust. Identities = 31/126 (25%), Positives = 52/126 (41%), Gaps = 21/126 (17%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQ 428 +IF RT+ A L L+ G G + H + Q ++ V++ F+ Sbjct 248 VIFCRTKVRASKLYDNLK----------------GLGYNCAELHGDIPQAKRERVMKSFR 291 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGL---LTNEISMVQARGRARADQSVYAFVATE 485 + + L+AT VA GLD+ V Y + + + I + GRA FVA + Sbjct 292 EAKIQYLIATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAK 351 Query 486 GSRELK 491 + L+ Sbjct 352 DEKHLE 357 >sp|P0CQ94|DBP7_CRYNJ ATP-dependent RNA helicase DBP7 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=DBP7 PE=3 SV=1 Length=948 Score = 34.7 bits (78), Expect = 3.9, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 30/56 (54%), Gaps = 5/56 (9%) Query 433 NLLVATSVAEEGLDIPHCNVVVRYGLLT----NE-ISMVQARGRARADQSVYAFVA 483 ++L ATSVA GLD+P VV+Y L T NE + V RA +AFV+ Sbjct 671 SVLFATSVASRGLDLPLVRAVVQYDLPTEGGANEYVHRVGRTARAGKGGEAWAFVS 726 >sp|P0CQ95|DBP7_CRYNB ATP-dependent RNA helicase DBP7 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=DBP7 PE=3 SV=1 Length=948 Score = 34.7 bits (78), Expect = 3.9, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 30/56 (54%), Gaps = 5/56 (9%) Query 433 NLLVATSVAEEGLDIPHCNVVVRYGLLT----NE-ISMVQARGRARADQSVYAFVA 483 ++L ATSVA GLD+P VV+Y L T NE + V RA +AFV+ Sbjct 671 SVLFATSVASRGLDLPLVRAVVQYDLPTEGGANEYVHRVGRTARAGKGGEAWAFVS 726 >sp|Q8CK11|UVRB_STRCO UvrABC system protein B OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) OX=100226 GN=uvrB PE=3 SV=1 Length=712 Score = 34.7 bits (78), Expect = 3.9, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E++++ + G ++LV ++ EGLD+P ++V + G L + S++Q GRA Sbjct 494 ELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRA 549 >sp|Q03AL7|UVRB_LACP3 UvrABC system protein B OS=Lacticaseibacillus paracasei (strain ATCC 334 / BCRC 17002 / CCUG 31169 / CIP 107868 / KCTC 3260 / NRRL B-441) OX=321967 GN=uvrB PE=3 SV=1 Length=671 Score = 34.7 bits (78), Expect = 4.0, Method: Compositional matrix adjust. Identities = 15/59 (25%), Positives = 34/59 (58%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ ++I+ + G ++L+ ++ EG+D+P +++ + G L E S++Q GRA Sbjct 490 ERTQIIRDLRLGKFDVLIGINLLREGIDVPEVSLIAILDADKEGFLRAERSLIQTIGRA 548 >sp|B3WCQ5|UVRB_LACCB UvrABC system protein B OS=Lacticaseibacillus casei (strain BL23) OX=543734 GN=uvrB PE=3 SV=1 Length=671 Score = 34.7 bits (78), Expect = 4.0, Method: Compositional matrix adjust. Identities = 15/59 (25%), Positives = 34/59 (58%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ ++I+ + G ++L+ ++ EG+D+P +++ + G L E S++Q GRA Sbjct 490 ERTQIIRDLRLGKFDVLIGINLLREGIDVPEVSLIAILDADKEGFLRAERSLIQTIGRA 548 >sp|Q74K90|UVRB_LACJO UvrABC system protein B OS=Lactobacillus johnsonii (strain CNCM I-12250 / La1 / NCC 533) OX=257314 GN=uvrB PE=3 SV=1 Length=671 Score = 34.3 bits (77), Expect = 4.1, Method: Compositional matrix adjust. Identities = 21/77 (27%), Positives = 40/77 (52%), Gaps = 9/77 (12%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRARADQ 476 E+I+ + G ++L+ ++ EG+D+P ++V + G L + +VQ GRA + Sbjct 491 EIIRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRSTRPLVQTIGRAARNS 550 Query 477 S----VYAFVATEGSRE 489 + +YA T+ RE Sbjct 551 NGKVIMYADSITDSMRE 567 >sp|A3LQW7|DBP2_PICST ATP-dependent RNA helicase DBP2 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) OX=322104 GN=DBP2 PE=3 SV=1 Length=530 Score = 34.3 bits (77), Expect = 4.1, Method: Compositional matrix adjust. Identities = 29/112 (26%), Positives = 59/112 (53%), Gaps = 11/112 (10%) Query 417 QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY---GLLTNEISMVQARGRAR 473 Q ++ V+++F+ G ++VAT VA G+D+ N V+ + G + + + + GR Sbjct 380 QSERDWVLREFKTGKSPIMVATDVAARGIDVKGINFVINFDMPGNIEDYVHRIGRTGRGG 439 Query 474 ADQSVYAFVATEGSRELKREL---INEALETLMEQAVAAVQKMDQAEYQAKI 522 A + +F T+G+ +L +L + EA +T+ + +Q+ D+ + A I Sbjct 440 ATGTAVSFF-TDGNNKLGGDLCKIMREAKQTIPPE----LQRFDRKSFGAHI 486 >sp|O76743|GLH4_CAEEL ATP-dependent RNA helicase glh-4 OS=Caenorhabditis elegans OX=6239 GN=glh-4 PE=1 SV=2 Length=1156 Score = 34.7 bits (78), Expect = 4.2, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 53/118 (45%), Gaps = 10/118 (8%) Query 397 DIRAQLLIGAGNSSQSTHMTQRDQQE--VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV 454 D A L+ AG S+ S H Q +Q + F+ G +VA++V GL+I + VV Sbjct 1016 DTLAALISSAGVSTISMHSYQNQEQRDRTLDDFRRGKYQCMVASNVCARGLNIAGLDHVV 1075 Query 455 RYGL-----LTNEISMVQARGRARADQSVYAFVATEGSRELKR---ELINEALETLME 504 Y + ++ + GRA + AFV E ++ ++NEA + + E Sbjct 1076 NYDMPDKNGFDEYVNRIGRTGRAGFTGTSTAFVDVENDTDIIPCLVSILNEAKKEVPE 1133 >sp|Q757U8|DBP10_EREGS ATP-dependent RNA helicase DBP10 OS=Eremothecium gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=DBP10 PE=3 SV=1 Length=960 Score = 34.7 bits (78), Expect = 4.3, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR 473 + Q +++ + F+ G N+LV T VA G+DIP VV L + V GR AR Sbjct 444 LDQHARRQQLHNFRCGLTNILVVTDVAARGVDIPLLANVVNMSLPASSKIFVHRVGRTAR 503 Query 474 ADQSVYAFV 482 A +A+ Sbjct 504 AGNKGWAYT 512 >sp|A7TEF4|FAL1_VANPO ATP-dependent RNA helicase FAL1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 GN=FAL1 PE=3 SV=1 Length=399 Score = 34.3 bits (77), Expect = 4.3, Method: Compositional matrix adjust. Identities = 19/80 (24%), Positives = 38/80 (48%), Gaps = 3/80 (4%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG---LLTNEISMVQARGR 471 M Q D+ +V+ F+ G +L++T V G+D+ ++V+ Y ++ N I + GR Sbjct 299 MKQEDRNKVMSDFRSGHSRVLISTDVWARGIDVQQVSLVINYDIPEIMENYIHRIGRSGR 358 Query 472 ARADQSVYAFVATEGSRELK 491 F+ + ++K Sbjct 359 FGRKGVAINFITSSDLSKMK 378 >sp|B8DF98|DCUP_LISMH Uroporphyrinogen decarboxylase OS=Listeria monocytogenes serotype 4a (strain HCC23) OX=552536 GN=hemE PE=3 SV=1 Length=350 Score = 33.9 bits (76), Expect = 4.4, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 31/61 (51%), Gaps = 4/61 (7%) Query 190 ANLDTWCIMSPQNCCPQ----LQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLE 245 NLD +++P C + LQE +P +NL H + ++LKKL + IH+ E Sbjct 285 GNLDPSTLLAPAKCLEEAERILQEGVLEPGYIFNLGHGVFPEVPPEMLKKLTNYIHERSE 344 Query 246 M 246 + Sbjct 345 I 345 >sp|A1CTL8|MAK5_ASPCL ATP-dependent RNA helicase mak5 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=mak5 PE=3 SV=1 Length=774 Score = 34.3 bits (77), Expect = 4.4, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 4/74 (5%) Query 413 THMTQRDQQEVIQKFQDGTLN---LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + M Q+ + +++F T N +L+AT VA GLDI ++V+ Y + V Sbjct 535 SSMAQKARLRSVERFSSPTANPGTILIATDVAARGLDIKGIDLVIHYHAPRTADTYVHRS 594 Query 470 GR-ARADQSVYAFV 482 GR ARA S + + Sbjct 595 GRTARAGASGKSVI 608 >sp|P10081|IF4A_YEAST ATP-dependent RNA helicase eIF4A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TIF1 PE=1 SV=3 Length=395 Score = 34.3 bits (77), Expect = 4.5, Method: Compositional matrix adjust. Identities = 21/101 (21%), Positives = 50/101 (50%), Gaps = 14/101 (14%) Query 362 FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ 421 + S + + +IF TR+ L L+ + TV S+ + + Q+++ Sbjct 255 YDSISVTQAVIFCNTRRKVEELTTKLRNDKF--TV------------SAIYSDLPQQERD 300 Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE 462 ++++F+ G+ +L++T + G+D+ ++V+ Y L N+ Sbjct 301 TIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANK 341 >sp|A6ZQJ1|IF4A_YEAS7 ATP-dependent RNA helicase eIF4A OS=Saccharomyces cerevisiae (strain YJM789) OX=307796 GN=TIF1 PE=3 SV=1 Length=395 Score = 34.3 bits (77), Expect = 4.5, Method: Compositional matrix adjust. Identities = 21/101 (21%), Positives = 50/101 (50%), Gaps = 14/101 (14%) Query 362 FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ 421 + S + + +IF TR+ L L+ + TV S+ + + Q+++ Sbjct 255 YDSISVTQAVIFCNTRRKVEELTTKLRNDKF--TV------------SAIYSDLPQQERD 300 Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE 462 ++++F+ G+ +L++T + G+D+ ++V+ Y L N+ Sbjct 301 TIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANK 341 >sp|Q6FY67|MAK5_CANGA ATP-dependent RNA helicase MAK5 OS=Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=MAK5 PE=3 SV=1 Length=733 Score = 34.3 bits (77), Expect = 4.5, Method: Compositional matrix adjust. Identities = 29/91 (32%), Positives = 44/91 (48%), Gaps = 11/91 (12%) Query 403 LIGAGNSSQSTH--MTQRDQQEVIQKFQD--------GTLNLLVATSVAEEGLDIPHCNV 452 LI G +S H MTQ+++ + ++KF+ G +L+A+ VA GLDI Sbjct 459 LINLGINSFQIHSSMTQKNRLKNLEKFEAMASKNNHLGKPTVLIASDVAARGLDIKGIKH 518 Query 453 VVRYGLLTNEISMVQARGR-ARADQSVYAFV 482 VV Y L + + + GR AR D A + Sbjct 519 VVHYHLPHSADTYIHRSGRTARGDNEGVAVM 549 >sp|Q0E2Q3|IF4A2_ORYSJ Putative eukaryotic initiation factor 4A-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0221300 PE=3 SV=2 Length=416 Score = 34.3 bits (77), Expect = 4.5, Method: Compositional matrix adjust. Identities = 29/104 (28%), Positives = 45/104 (43%), Gaps = 20/104 (19%) Query 362 FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRD 419 F + R IIF TR A SL T IR G G + + H + QR Sbjct 280 FDTMEITRSIIFVNTRHHAKSL-----------TEKIR-----GKGYTVSAIHGGIHQRA 323 Query 420 QQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI 463 + + +Q+FQ G+ +L+ T + G+D+ + Y L T + Sbjct 324 RDKAVQEFQSGSSRILITTDL--RGIDVLRAPAAIFYDLPTQPV 365 >sp|Q9VUV9|U520_DROME U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Drosophila melanogaster OX=7227 GN=Brr2 PE=2 SV=4 Length=2142 Score = 34.7 bits (78), Expect = 4.6, Method: Compositional matrix adjust. Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 26/168 (15%) Query 18 KNIIIWLPTGAGKTRAAAYVAKRHLE---TVDGA------KVVVLVNRVHLVTQHGEEF- 67 +N+++ PTGAGKT A R + DG K++ + LV + F Sbjct 497 ENMLLCAPTGAGKTNVALLTMMREIGKHINEDGTINAQDFKIIYVAPMKSLVQEMVGNFG 556 Query 68 RRMLDGRWTVTTLSGDMGPRAGFGHLAR----CHDLLICTAELLQMALTSPEEEEHVELT 123 RR+ TV+ L+GD L R +++CT E + E V L Sbjct 557 RRLACYNLTVSELTGD-------HQLTREQIAATQVIVCTPEKWDIITRKGGERTFVSLV 609 Query 124 VFSLIVVDECH--HTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS 169 L+++DE H H + V ++++ + ++ Q +++GL+A+ Sbjct 610 --RLVIIDEIHLLHDERGPVLEALVARTIR-NIETTQEEVRLVGLSAT 654 >sp|Q12389|DBP10_YEAST ATP-dependent RNA helicase DBP10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DBP10 PE=1 SV=2 Length=995 Score = 34.3 bits (77), Expect = 4.6, Method: Compositional matrix adjust. Identities = 21/56 (38%), Positives = 29/56 (52%), Gaps = 1/56 (2%) Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF 481 F+ G ++LV T VA G+DIP V+ Y L + V GR ARA +A+ Sbjct 478 FRAGLTSILVVTDVAARGVDIPMLANVINYTLPGSSKIFVHRVGRTARAGNKGWAY 533 >sp|A6ZXU0|DBP10_YEAS7 ATP-dependent RNA helicase DBP10 OS=Saccharomyces cerevisiae (strain YJM789) OX=307796 GN=DBP10 PE=3 SV=1 Length=995 Score = 34.3 bits (77), Expect = 4.6, Method: Compositional matrix adjust. Identities = 21/56 (38%), Positives = 29/56 (52%), Gaps = 1/56 (2%) Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF 481 F+ G ++LV T VA G+DIP V+ Y L + V GR ARA +A+ Sbjct 478 FRAGLTSILVVTDVAARGVDIPMLANVINYTLPGSSKIFVHRVGRTARAGNKGWAY 533 >sp|Q3Z9B4|UVRB_DEHM1 UvrABC system protein B OS=Dehalococcoides mccartyi (strain ATCC BAA-2266 / KCTC 15142 / 195) OX=243164 GN=uvrB PE=3 SV=1 Length=668 Score = 34.3 bits (77), Expect = 4.7, Method: Compositional matrix adjust. Identities = 16/56 (29%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E+++ + G +++V ++ EGLD+P ++V + G L +E +++Q GRA Sbjct 484 EILRDLRLGVYDVIVGINLLREGLDLPEVSLVAILDADKEGYLRSEQALIQTMGRA 539 >sp|P9WFC7|UVRB_MYCTU UvrABC system protein B OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=uvrB PE=1 SV=2 Length=719 Score = 34.3 bits (77), Expect = 4.8, Method: Compositional matrix adjust. Identities = 23/77 (30%), Positives = 42/77 (55%), Gaps = 9/77 (12%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRARADQ 476 E++++ + G ++LV ++ EGLD+P ++V + G L + S++Q GRA + Sbjct 509 ELLRQLRLGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSRSLIQTIGRAARNV 568 Query 477 S----VYAFVATEGSRE 489 S +YA T+ RE Sbjct 569 SGEVHMYADKITDSMRE 585 >sp|P9WFC6|UVRB_MYCTO UvrABC system protein B OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=uvrB PE=3 SV=2 Length=719 Score = 34.3 bits (77), Expect = 4.8, Method: Compositional matrix adjust. Identities = 23/77 (30%), Positives = 42/77 (55%), Gaps = 9/77 (12%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRARADQ 476 E++++ + G ++LV ++ EGLD+P ++V + G L + S++Q GRA + Sbjct 509 ELLRQLRLGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSRSLIQTIGRAARNV 568 Query 477 S----VYAFVATEGSRE 489 S +YA T+ RE Sbjct 569 SGEVHMYADKITDSMRE 585 >sp|P67423|UVRB_MYCBO UvrABC system protein B OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) OX=233413 GN=uvrB PE=3 SV=2 Length=719 Score = 34.3 bits (77), Expect = 4.8, Method: Compositional matrix adjust. Identities = 23/77 (30%), Positives = 42/77 (55%), Gaps = 9/77 (12%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRARADQ 476 E++++ + G ++LV ++ EGLD+P ++V + G L + S++Q GRA + Sbjct 509 ELLRQLRLGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSRSLIQTIGRAARNV 568 Query 477 S----VYAFVATEGSRE 489 S +YA T+ RE Sbjct 569 SGEVHMYADKITDSMRE 585 >sp|Q3ZZK7|UVRB_DEHMC UvrABC system protein B OS=Dehalococcoides mccartyi (strain CBDB1) OX=255470 GN=uvrB PE=3 SV=1 Length=664 Score = 34.3 bits (77), Expect = 4.8, Method: Compositional matrix adjust. Identities = 23/81 (28%), Positives = 42/81 (52%), Gaps = 9/81 (11%) Query 400 AQLLIGAGNSSQSTHMTQRDQQEVIQKFQD---GTLNLLVATSVAEEGLDIPHCNVVV-- 454 A L+ G + H ++ D E I+ +D G +++V ++ EGLD+P ++V Sbjct 460 ADYLVEMGVKTHYLH-SEVDTLERIEILRDLRLGVYDVIVGINLLREGLDLPEVSLVAIL 518 Query 455 ---RYGLLTNEISMVQARGRA 472 + G L +E +++Q GRA Sbjct 519 DADKEGYLRSEQALIQTMGRA 539 >sp|Q4WWD3|DHH1_ASPFU ATP-dependent RNA helicase dhh1 OS=Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293) OX=330879 GN=dhh1 PE=3 SV=1 Length=507 Score = 34.3 bits (77), Expect = 4.8, Method: Compositional matrix adjust. Identities = 31/119 (26%), Positives = 51/119 (43%), Gaps = 15/119 (13%) Query 369 RGII----FTRTRQSAH---SLLLWLQQQQGL------QTVDIRAQLLIGAGNSSQSTH- 414 RGI F +Q H +L LQ Q + V++ A+ + G S +H Sbjct 257 RGITQYYAFVEEKQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHA 316 Query 415 -MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA 472 M Q+ + V F++G LV + + G+DI NVV+ + N + + GR+ Sbjct 317 RMLQQHRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRS 375 >sp|A5E2I8|SPB4_LODEL ATP-dependent rRNA helicase SPB4 OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) OX=379508 GN=SPB4 PE=3 SV=1 Length=637 Score = 34.3 bits (77), Expect = 4.8, Method: Compositional matrix adjust. Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 17/144 (12%) Query 346 PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQ--QQGLQTVDIRAQLL 403 PE+ ML+ + QF + I++ T S L + + +DI A L Sbjct 263 PEHKLTTMLQMLRDNQFK-----KAIVYFPTCTSVKHFYQMLSKLCKSSANDIDISALLF 317 Query 404 IGAGNSSQSTHMTQRDQQEVIQKFQDGTLN----LLVATSVAEEGLDIPHCNVVVRYGLL 459 S +T + + ++KF +G +L+AT VA G+DIP ++V++ Sbjct 318 F-----SLHGQLTTKSRLNTLEKFTEGNDESKKYILMATDVAARGIDIPDVDLVIQIDPP 372 Query 460 TNEISMVQARGR-ARADQSVYAFV 482 T+ + GR RA++ A V Sbjct 373 TDPSVFLHRCGRTGRANKVGRAIV 396 >sp|Q0CBE1|DHH1_ASPTN ATP-dependent RNA helicase dhh1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=dhh1 PE=3 SV=1 Length=509 Score = 34.3 bits (77), Expect = 4.8, Method: Compositional matrix adjust. Identities = 31/119 (26%), Positives = 51/119 (43%), Gaps = 15/119 (13%) Query 369 RGII----FTRTRQSAH---SLLLWLQQQQGL------QTVDIRAQLLIGAGNSSQSTH- 414 RGI F +Q H +L LQ Q + V++ A+ + G S +H Sbjct 257 RGITQYYAFVEEKQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHA 316 Query 415 -MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA 472 M Q+ + V F++G LV + + G+DI NVV+ + N + + GR+ Sbjct 317 RMLQQHRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRS 375 >sp|Q6CSZ7|DHH1_KLULA ATP-dependent RNA helicase DHH1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=DHH1 PE=3 SV=1 Length=514 Score = 34.3 bits (77), Expect = 4.9, Method: Compositional matrix adjust. Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 2/79 (3%) Query 396 VDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV 453 V++ A+ + G S +H M Q ++ +V +F+ G + LV + + G+DI NVV Sbjct 286 VELLAKKITELGFSCYYSHARMKQSERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVV 345 Query 454 VRYGLLTNEISMVQARGRA 472 + + + + GR+ Sbjct 346 INFDFPKTAETYLHRIGRS 364 >sp|Q109G2|RH12_ORYSJ DEAD-box ATP-dependent RNA helicase 12 OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g0503700 PE=2 SV=2 Length=521 Score = 34.3 bits (77), Expect = 5.0, Method: Compositional matrix adjust. Identities = 29/111 (26%), Positives = 45/111 (41%), Gaps = 11/111 (10%) Query 373 FTRTRQSAH---SLLLWLQQQQGL------QTVDIRAQLLIGAGNSSQSTH--MTQRDQQ 421 F RQ H +L LQ Q + V++ A+ + G S H M Q + Sbjct 365 FVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRN 424 Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA 472 V F++G LV T + G+DI NVV+ + + + GR+ Sbjct 425 RVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKTSETYLHRVGRS 475 >sp|Q9FNQ1|DEXHE_ARATH DExH-box ATP-dependent RNA helicase DExH14 OS=Arabidopsis thaliana OX=3702 GN=BRR2C PE=2 SV=1 Length=2157 Score = 34.3 bits (77), Expect = 5.0, Method: Compositional matrix adjust. Identities = 43/173 (25%), Positives = 76/173 (44%), Gaps = 37/173 (21%) Query 18 KNIIIWLPTGAGKTRAAA----YVAKRHLETVDGA------KVVVLVNRVHLVTQHGEEF 67 +NI++ PTGAGKT A + K+H DG K+V + L + F Sbjct 524 ENILVCAPTGAGKTNIAMISVLHEIKQHFR--DGYLHKNEFKIVYVAPMKALAAEVTSAF 581 Query 68 -RRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELT--- 123 RR+ V L+GDM L E QM +T+PE+ + + Sbjct 582 SRRLAPLNMVVKELTGDM-------------QLTKTELEETQMIVTTPEKWDVITRKSSD 628 Query 124 -----VFSLIVVDECHHTHKD--TVYNVIMSQYLELKLQRAQPLPQVLGLTAS 169 + L+++DE H + D V ++++ L +++ Q + +++GL+A+ Sbjct 629 MSMSMLVKLLIIDEVHLLNDDRGAVIEALVARTLR-QVESTQTMIRIVGLSAT 680 >sp|A1D8G1|DHH1_NEOFI ATP-dependent RNA helicase dhh1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dhh1 PE=3 SV=1 Length=507 Score = 33.9 bits (76), Expect = 5.0, Method: Compositional matrix adjust. Identities = 31/119 (26%), Positives = 51/119 (43%), Gaps = 15/119 (13%) Query 369 RGII----FTRTRQSAH---SLLLWLQQQQGL------QTVDIRAQLLIGAGNSSQSTH- 414 RGI F +Q H +L LQ Q + V++ A+ + G S +H Sbjct 257 RGITQYYAFVEEKQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHA 316 Query 415 -MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA 472 M Q+ + V F++G LV + + G+DI NVV+ + N + + GR+ Sbjct 317 RMLQQHRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRS 375 >sp|Q6CDS6|ROK1_YARLI ATP-dependent RNA helicase ROK1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=ROK1 PE=3 SV=1 Length=547 Score = 34.3 bits (77), Expect = 5.0, Method: Compositional matrix adjust. Identities = 18/57 (32%), Positives = 30/57 (53%), Gaps = 0/57 (0%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 MT + VI +F++G + +L+ T V G+D N+V+ Y + + S V GR Sbjct 398 MTAAKRASVIDRFRNGEVWVLICTDVLARGIDFRGINLVINYDVPQSAQSYVHRIGR 454 >sp|P34668|YO12_CAEEL Putative ATP-dependent RNA helicase ZK686.2 OS=Caenorhabditis elegans OX=6239 GN=ZK686.2 PE=3 SV=2 Length=593 Score = 33.9 bits (76), Expect = 5.2, Method: Compositional matrix adjust. Identities = 31/127 (24%), Positives = 57/127 (45%), Gaps = 10/127 (8%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYA 480 ++++KF +L+ + V G D+ + V+ Y L ++ V GR RA Q Y Sbjct 440 KMLEKFNKNENRVLICSDVLARGTDLNKVDCVINYNLPADDKLFVHRAGRTGRAGQDGY- 498 Query 481 FVATEGSRELKR------ELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRA 534 V + G +E KR ++ N +T+ EQ + + D Y + L +A ++ +A Sbjct 499 -VISVGDKESKRLFVKMLKVTNLWGDTVEEQMEEYIFEKDMDRYSKALESL-KATVSSQA 556 Query 535 AQAAQRE 541 R+ Sbjct 557 KTGGSRQ 563 >sp|A2QY39|DHH1_ASPNC ATP-dependent RNA helicase dhh1 OS=Aspergillus niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) OX=425011 GN=dhh1 PE=3 SV=1 Length=505 Score = 33.9 bits (76), Expect = 5.2, Method: Compositional matrix adjust. Identities = 31/119 (26%), Positives = 51/119 (43%), Gaps = 15/119 (13%) Query 369 RGII----FTRTRQSAH---SLLLWLQQQQGL------QTVDIRAQLLIGAGNSSQSTH- 414 RGI F +Q H +L LQ Q + V++ A+ + G S +H Sbjct 257 RGITQYYAFVEEKQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHA 316 Query 415 -MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA 472 M Q+ + V F++G LV + + G+DI NVV+ + N + + GR+ Sbjct 317 RMLQQHRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRS 375 >sp|Q6CXT4|IF4A_KLULA ATP-dependent RNA helicase eIF4A OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=TIF1 PE=3 SV=1 Length=396 Score = 33.9 bits (76), Expect = 5.2, Method: Compositional matrix adjust. Identities = 21/101 (21%), Positives = 51/101 (50%), Gaps = 14/101 (14%) Query 362 FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ 421 + S + + +IF TR+ L L++ TV S+ + + Q+++ Sbjct 256 YDSISVTQAVIFCNTRRKVEELTERLRENNF--TV------------SAIYSDLQQQERD 301 Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE 462 ++++F+ G+ +L++T + G+D+ ++V+ Y L +N+ Sbjct 302 TIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNK 342 >sp|Q2GQ93|DHH1_CHAGB ATP-dependent RNA helicase DHH1 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=DHH1 PE=3 SV=1 Length=512 Score = 33.9 bits (76), Expect = 5.2, Method: Compositional matrix adjust. Identities = 21/79 (27%), Positives = 38/79 (48%), Gaps = 2/79 (3%) Query 396 VDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV 453 V++ A+ + G S +H M Q+ + V F++G LV + + G+DI NVV Sbjct 261 VELLAKKITELGYSCFYSHAKMAQQARNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVV 320 Query 454 VRYGLLTNEISMVQARGRA 472 + + N + + GR+ Sbjct 321 INFDFPKNAETYLHRIGRS 339 >sp|A1CJ18|DHH1_ASPCL ATP-dependent RNA helicase dhh1 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=dhh1 PE=3 SV=1 Length=503 Score = 33.9 bits (76), Expect = 5.3, Method: Compositional matrix adjust. Identities = 31/119 (26%), Positives = 51/119 (43%), Gaps = 15/119 (13%) Query 369 RGII----FTRTRQSAH---SLLLWLQQQQGL------QTVDIRAQLLIGAGNSSQSTH- 414 RGI F +Q H +L LQ Q + V++ A+ + G S +H Sbjct 257 RGITQYYAFVEEKQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHA 316 Query 415 -MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA 472 M Q+ + V F++G LV + + G+DI NVV+ + N + + GR+ Sbjct 317 RMLQQHRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRS 375 >sp|Q0U7S9|DHH1_PHANO ATP-dependent RNA helicase DHH1 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) OX=321614 GN=DHH1 PE=3 SV=1 Length=522 Score = 33.9 bits (76), Expect = 5.4, Method: Compositional matrix adjust. Identities = 31/119 (26%), Positives = 51/119 (43%), Gaps = 15/119 (13%) Query 369 RGII----FTRTRQSAH---SLLLWLQQQQGL------QTVDIRAQLLIGAGNSSQSTH- 414 RGI F +Q H +L LQ Q + V++ A+ + G S +H Sbjct 259 RGITQYYAFVEEKQKVHCLNTLFNKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHA 318 Query 415 -MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA 472 M Q ++ V F++G LV + + G+DI NVV+ + N + + GR+ Sbjct 319 RMLQHNRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRS 377 >sp|Q1E306|ROK1_COCIM ATP-dependent RNA helicase ROK1 OS=Coccidioides immitis (strain RS) OX=246410 GN=ROK1 PE=3 SV=1 Length=730 Score = 33.9 bits (76), Expect = 5.5, Method: Compositional matrix adjust. Identities = 31/111 (28%), Positives = 51/111 (46%), Gaps = 21/111 (19%) Query 368 PRGIIFTRTRQSA---HSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ----STHMTQRDQ 420 P +IFT+T A HS L++ DI A+ AG SS+ + ++ + Sbjct 501 PPFLIFTQTIARAIALHSELMY----------DIPAE----AGGSSRIAVLHSELSDSKR 546 Query 421 QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 +V+ F+ G + +L+ T + G+D N VV Y + + S V GR Sbjct 547 SDVMAGFRKGEIWVLITTDLLARGVDFRGINGVVNYDIPNSSASYVHRVGR 597 >sp|Q6FL17|SUB2_CANGA ATP-dependent RNA helicase SUB2 OS=Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=SUB2 PE=3 SV=1 Length=439 Score = 33.9 bits (76), Expect = 5.5, Method: Compositional matrix adjust. Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 3/73 (4%) Query 403 LIGAGNSSQST---HMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL 459 L+ A N T HM Q ++ + F+D + V+T V G+DI N+ + Y LL Sbjct 318 LLNASNFPAITVHGHMKQEERIARYKAFKDFEKRICVSTDVFGRGIDIERINLAINYDLL 377 Query 460 TNEISMVQARGRA 472 + GRA Sbjct 378 NEADQYLHRVGRA 390 >sp|Q6BJX6|DHH1_DEBHA ATP-dependent RNA helicase DHH1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DHH1 PE=3 SV=2 Length=516 Score = 33.9 bits (76), Expect = 5.6, Method: Compositional matrix adjust. Identities = 30/119 (25%), Positives = 52/119 (44%), Gaps = 15/119 (13%) Query 369 RGI----IFTRTRQSAH---SLLLWLQQQQGL------QTVDIRAQLLIGAGNSSQSTH- 414 RGI F +Q H +L LQ Q + V++ A+ + G S +H Sbjct 240 RGISQFYAFVEEKQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITELGYSCYYSHA 299 Query 415 -MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA 472 M Q + +V +F+ G + +LV + + G+DI NVV+ + + + GR+ Sbjct 300 KMPQHARNKVFHEFRQGKVRVLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRS 358 >sp|Q9SYP1|DEXHC_ARATH DExH-box ATP-dependent RNA helicase DExH12 OS=Arabidopsis thaliana OX=3702 GN=BRR2A PE=1 SV=1 Length=2171 Score = 34.3 bits (77), Expect = 5.6, Method: Compositional matrix adjust. Identities = 41/167 (25%), Positives = 76/167 (46%), Gaps = 18/167 (11%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRHLE---TVDGA------KVVVLVNRVHLVTQ-HG 64 + +NI++ PTGAGKT A + LE DG K+V + LV + G Sbjct 518 FKAENILLCAPTGAGKTNVAMLTILQQLEMNRNTDGTYNHGDYKIVYVAPMKALVAEVVG 577 Query 65 EEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 R+ D V LSGD ++ G +++ T E + + + +L Sbjct 578 NLSNRLKDYGVIVRELSGD---QSLTGREIEETQIIVTTPEKWDIITRKSGDRTYTQLV- 633 Query 125 FSLIVVDECH--HTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS 169 L+++DE H H ++ V I+++ L +++ + +++GL+A+ Sbjct 634 -RLLIIDEIHLLHDNRGPVLESIVARTLR-QIETTKENIRLVGLSAT 678 >sp|A5DBI5|DBP5_PICGU ATP-dependent RNA helicase DBP5 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DBP5 PE=3 SV=1 Length=482 Score = 33.9 bits (76), Expect = 5.6, Method: Compositional matrix adjust. Identities = 20/89 (22%), Positives = 42/89 (47%), Gaps = 14/89 (16%) Query 370 GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD 429 IIF +T+ +A+ L ++ + G S + + ++ ++I F++ Sbjct 333 SIIFVKTKATANYLYAKMKSE--------------GHACSILHSDLDNSERDKLIDDFRE 378 Query 430 GTLNLLVATSVAEEGLDIPHCNVVVRYGL 458 G +L+ T+V G+DI ++VV Y + Sbjct 379 GRSKVLITTNVLARGIDIASVSMVVNYDI 407 >sp|A6R9U4|MAK5_AJECN ATP-dependent RNA helicase MAK5 OS=Ajellomyces capsulatus (strain NAm1 / WU24) OX=2059318 GN=MAK5 PE=3 SV=1 Length=772 Score = 33.9 bits (76), Expect = 5.8, Method: Compositional matrix adjust. Identities = 22/69 (32%), Positives = 36/69 (52%), Gaps = 4/69 (6%) Query 413 THMTQRDQQEVIQKFQDGTLN---LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + M Q+ + +++F T + +LVAT VA GLDI ++++ Y + + V Sbjct 522 SSMAQKARLRSVERFSSPTADPSSILVATDVAARGLDIKGIDLIIHYHVPRTADTYVHRS 581 Query 470 GR-ARADQS 477 GR ARA S Sbjct 582 GRTARASAS 590 >sp|Q2HEB0|PRP28_CHAGB Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=PRP28 PE=3 SV=1 Length=705 Score = 33.9 bits (76), Expect = 5.8, Method: Compositional matrix adjust. Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 3/75 (4%) Query 416 TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA 474 TQ ++ + ++G N+LVAT +A G+D+ ++VV + + ++ + GR RA Sbjct 577 TQEQREASLASVRNGQANILVATDLAGRGIDVADVSLVVNFNMPSSIEAYTHRIGRTGRA 636 Query 475 DQSVYA--FVATEGS 487 +S A F+ E S Sbjct 637 GKSGVAITFLGNEDS 651 >sp|Q0E2Z7|RH41_ORYSJ DEAD-box ATP-dependent RNA helicase 41 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0201900 PE=2 SV=2 Length=536 Score = 33.9 bits (76), Expect = 6.0, Method: Compositional matrix adjust. Identities = 29/130 (22%), Positives = 53/130 (41%), Gaps = 15/130 (12%) Query 368 PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF 427 P ++F +R A L + GL+ V I T +++E +++F Sbjct 384 PPAVVFVSSRIGADLLSEAITVATGLKVVSIHGD-------------KTMNERRESLRRF 430 Query 428 QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRAR--ADQSVYAFVATE 485 G ++++V T V G+D+ V+ + + + V GRA + + E Sbjct 431 LTGEVSVVVCTGVLGRGMDLLKVRQVILFDMPNSIDEYVHQVGRASRMGVEGMAIVFVNE 490 Query 486 GSRELKRELI 495 R L REL+ Sbjct 491 EDRNLFRELV 500 >sp|Q5L4S6|UVRB_CHLAB UvrABC system protein B OS=Chlamydia abortus (strain DSM 27085 / S26/3) OX=218497 GN=uvrB PE=3 SV=1 Length=656 Score = 33.9 bits (76), Expect = 6.1, Method: Compositional matrix adjust. Identities = 28/126 (22%), Positives = 62/126 (49%), Gaps = 21/126 (17%) Query 352 EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ 411 ++LE+I +R S + + ++ + T++ A + +L + +DI A L +++ Sbjct 429 DLLEEIRKRL--SKSQEKILVISITKKLAEDIAAFLSE------LDIAAAYLHSGIETAE 480 Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMV 466 T ++ + G +++L+ ++ EGLD+P ++V + G L + S++ Sbjct 481 RTR--------ILSDLRLGNIDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSTSSLI 532 Query 467 QARGRA 472 Q GRA Sbjct 533 QFCGRA 538 >sp|Q7L2E3|DHX30_HUMAN ATP-dependent RNA helicase DHX30 OS=Homo sapiens OX=9606 GN=DHX30 PE=1 SV=1 Length=1194 Score = 33.9 bits (76), Expect = 6.1, Method: Compositional matrix adjust. Identities = 44/183 (24%), Positives = 76/183 (42%), Gaps = 29/183 (16%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ-----STHMTQRDQQEVIQ 425 ++ R +L +L Q ++ V R Q +G S +++ DQ+ + Q Sbjct 659 VLHIDARGEPGGILCFLPGWQEIKGVQQRLQEALGMHESKYLILPVHSNIPMMDQKAIFQ 718 Query 426 KFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL-------LTNEIS-----------MVQ 467 + G +++AT++AE + I VV GL L ++S ++Q Sbjct 719 QPPVGVRKIVLATNIAETSITINDIVHVVDSGLHKEERYDLKTKVSCLETVWVSRANVIQ 778 Query 468 ARGRARADQSVYAFVATEGSRELKR------ELINEALETLMEQAVAAVQKMDQAEYQAK 521 RGRA QS +A+ SR K E++ LE L+ QA + + E+ +K Sbjct 779 RRGRAGRCQSGFAYHLFPRSRLEKMVPFQVPEILRTPLENLVLQAKIHMPEKTAVEFLSK 838 Query 522 IRD 524 D Sbjct 839 AVD 841 >sp|Q5ZHZ0|DX39B_CHICK Spliceosome RNA helicase DDX39B OS=Gallus gallus OX=9031 GN=DDX39B PE=2 SV=1 Length=428 Score = 33.9 bits (76), Expect = 6.1, Method: Compositional matrix adjust. Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 2/75 (3%) Query 400 AQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG 457 AQLL+ + + H M Q ++ Q+F+D +LVAT++ G+DI N+ Y Sbjct 304 AQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYD 363 Query 458 LLTNEISMVQARGRA 472 + + + + RA Sbjct 364 MPEDSDTYLHRVARA 378 >sp|Q63413|DX39B_RAT Spliceosome RNA helicase Ddx39b OS=Rattus norvegicus OX=10116 GN=Ddx39b PE=2 SV=3 Length=428 Score = 33.5 bits (75), Expect = 6.3, Method: Compositional matrix adjust. Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 2/75 (3%) Query 400 AQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG 457 AQLL+ + + H M Q ++ Q+F+D +LVAT++ G+DI N+ Y Sbjct 304 AQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYD 363 Query 458 LLTNEISMVQARGRA 472 + + + + RA Sbjct 364 MPEDSDTYLHRVARA 378 >sp|Q9Z1N5|DX39B_MOUSE Spliceosome RNA helicase Ddx39b OS=Mus musculus OX=10090 GN=Ddx39b PE=1 SV=1 Length=428 Score = 33.5 bits (75), Expect = 6.3, Method: Compositional matrix adjust. Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 2/75 (3%) Query 400 AQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG 457 AQLL+ + + H M Q ++ Q+F+D +LVAT++ G+DI N+ Y Sbjct 304 AQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYD 363 Query 458 LLTNEISMVQARGRA 472 + + + + RA Sbjct 364 MPEDSDTYLHRVARA 378 >sp|A3LZT3|DBP10_PICST ATP-dependent RNA helicase DBP10 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) OX=322104 GN=DBP10 PE=3 SV=2 Length=931 Score = 33.9 bits (76), Expect = 6.4, Method: Compositional matrix adjust. Identities = 35/127 (28%), Positives = 56/127 (44%), Gaps = 13/127 (10%) Query 365 SNSPRGIIFTRTR-------QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT- 416 S S R F + R S HS ++++ + ++ + LL AG + T Sbjct 371 SGSKRKYKFKKERLPSANVLPSPHSTIVFVPTKHHVEYI---TTLLRDAGYLVSYIYGTL 427 Query 417 -QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA 474 Q ++ + +F+ G +LV T VA G+DIP VV Y L + + GR ARA Sbjct 428 DQHARKNQLYQFRLGMTTVLVVTDVAARGIDIPVLANVVNYTLPGSSKIFIHRVGRTARA 487 Query 475 DQSVYAF 481 +A+ Sbjct 488 GNKGWAY 494 >sp|Q3T147|DX39B_BOVIN Spliceosome RNA helicase DDX39B OS=Bos taurus OX=9913 GN=DDX39B PE=2 SV=1 Length=428 Score = 33.5 bits (75), Expect = 6.4, Method: Compositional matrix adjust. Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 2/75 (3%) Query 400 AQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG 457 AQLL+ + + H M Q ++ Q+F+D +LVAT++ G+DI N+ Y Sbjct 304 AQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYD 363 Query 458 LLTNEISMVQARGRA 472 + + + + RA Sbjct 364 MPEDSDTYLHRVARA 378 >sp|Q09747|DBP5_SCHPO ATP-dependent RNA helicase dbp5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=dbp5 PE=1 SV=1 Length=503 Score = 33.9 bits (76), Expect = 6.4, Method: Compositional matrix adjust. Identities = 16/42 (38%), Positives = 25/42 (60%), Gaps = 2/42 (5%) Query 417 QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL 458 QRD ++ F+ GT +LV T+V G+D+ N+VV Y + Sbjct 390 QRDA--IMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDM 429 >sp|Q6MS38|UVRB_MYCMS UvrABC system protein B OS=Mycoplasma mycoides subsp. mycoides SC (strain CCUG 32753 / NCTC 10114 / PG1) OX=272632 GN=uvrB PE=3 SV=1 Length=671 Score = 33.9 bits (76), Expect = 6.5, Method: Compositional matrix adjust. Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 5/59 (8%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 ++ E++ + G +++V ++ EGLD+P ++V + G L N S++Q GR Sbjct 493 ERSEILNDLRKGVYDVVVGVNLLREGLDLPEVSLVCILDADKQGFLRNYRSLIQTIGRV 551 >sp|O80902|CIPKM_ARATH CBL-interacting serine/threonine-protein kinase 22 OS=Arabidopsis thaliana OX=3702 GN=CIPK22 PE=1 SV=1 Length=431 Score = 33.5 bits (75), Expect = 6.5, Method: Compositional matrix adjust. Identities = 31/94 (33%), Positives = 48/94 (51%), Gaps = 12/94 (13%) Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEE-GLDIPH--CNVVVRYGLLTNEISM 465 S +ST + R +EV ++ LNL +A L+ PH NVVV+ LTNE+ M Sbjct 340 SDESTAVIMRKVEEVAKQ-----LNLRIAKKKERAIKLEGPHGVANVVVKVRRLTNELVM 394 Query 466 VQARGRARADQSVYAFVATEGSRELKRELINEAL 499 V+ + + R V+A + R+ R LIN+ + Sbjct 395 VEMKNKQRDVGLVWA----DALRQKLRRLINQPV 424 >sp|A6R3R5|IF4A_AJECN ATP-dependent RNA helicase eIF4A OS=Ajellomyces capsulatus (strain NAm1 / WU24) OX=2059318 GN=TIF1 PE=3 SV=1 Length=385 Score = 33.5 bits (75), Expect = 6.5, Method: Compositional matrix adjust. Identities = 14/53 (26%), Positives = 31/53 (58%), Gaps = 0/53 (0%) Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN 461 S+ M Q+ + ++++F+ G+ +L+AT + G+D+ ++V+ Y L N Sbjct 292 SAMHGDMEQQQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPAN 344 >sp|Q5RE47|DX39B_PONAB Spliceosome RNA helicase DDX39B OS=Pongo abelii OX=9601 GN=DDX39B PE=2 SV=1 Length=428 Score = 33.5 bits (75), Expect = 6.6, Method: Compositional matrix adjust. Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 2/75 (3%) Query 400 AQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG 457 AQLL+ + + H M Q ++ Q+F+D +LVAT++ G+DI N+ Y Sbjct 304 AQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYD 363 Query 458 LLTNEISMVQARGRA 472 + + + + RA Sbjct 364 MPEDSDTYLHRVARA 378 >sp|Q29024|DX39B_PIG Spliceosome RNA helicase DDX39B OS=Sus scrofa OX=9823 GN=DDX39B PE=3 SV=2 Length=428 Score = 33.5 bits (75), Expect = 6.6, Method: Compositional matrix adjust. Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 2/75 (3%) Query 400 AQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG 457 AQLL+ + + H M Q ++ Q+F+D +LVAT++ G+DI N+ Y Sbjct 304 AQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYD 363 Query 458 LLTNEISMVQARGRA 472 + + + + RA Sbjct 364 MPEDSDTYLHRVARA 378 >sp|P60024|DX39B_PANTR Spliceosome RNA helicase DDX39B OS=Pan troglodytes OX=9598 GN=DDX39B PE=3 SV=1 Length=428 Score = 33.5 bits (75), Expect = 6.6, Method: Compositional matrix adjust. Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 2/75 (3%) Query 400 AQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG 457 AQLL+ + + H M Q ++ Q+F+D +LVAT++ G+DI N+ Y Sbjct 304 AQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYD 363 Query 458 LLTNEISMVQARGRA 472 + + + + RA Sbjct 364 MPEDSDTYLHRVARA 378 >sp|Q5TM17|DX39B_MACMU Spliceosome RNA helicase DDX39B OS=Macaca mulatta OX=9544 GN=DDX39B PE=3 SV=1 Length=428 Score = 33.5 bits (75), Expect = 6.6, Method: Compositional matrix adjust. Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 2/75 (3%) Query 400 AQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG 457 AQLL+ + + H M Q ++ Q+F+D +LVAT++ G+DI N+ Y Sbjct 304 AQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYD 363 Query 458 LLTNEISMVQARGRA 472 + + + + RA Sbjct 364 MPEDSDTYLHRVARA 378 >sp|Q13838|DX39B_HUMAN Spliceosome RNA helicase DDX39B OS=Homo sapiens OX=9606 GN=DDX39B PE=1 SV=1 Length=428 Score = 33.5 bits (75), Expect = 6.6, Method: Compositional matrix adjust. Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 2/75 (3%) Query 400 AQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG 457 AQLL+ + + H M Q ++ Q+F+D +LVAT++ G+DI N+ Y Sbjct 304 AQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYD 363 Query 458 LLTNEISMVQARGRA 472 + + + + RA Sbjct 364 MPEDSDTYLHRVARA 378 >sp|Q7N8V1|RAPA_PHOLL RNA polymerase-associated protein RapA OS=Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01) OX=243265 GN=rapA PE=3 SV=1 Length=970 Score = 33.9 bits (76), Expect = 6.6, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 11/147 (7%) Query 26 TGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMG 85 G GKT A + + L +V+V+V L Q E R + R+ + S + Sbjct 179 VGLGKTIEAGMIIHQQLLAGRAERVLVIVPD-SLQHQWLVEMLRRFNLRFALFDDSRYIE 237 Query 86 PRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHT--HKDTVYN 143 R + L++C+ L A + + EH+ + L+VVDE HH +D Sbjct 238 ARHDSDNPFETEQLVLCS---LDFARRNKQRFEHMLEASWDLMVVDEAHHLVWSEDAP-- 292 Query 144 VIMSQYLELKLQRAQPLPQVLGLTASP 170 S+ ++ Q A+ +P VL LTA+P Sbjct 293 ---SREYQVVEQLAEQIPSVLLLTATP 316 >sp|Q2NKY8|DHX30_BOVIN ATP-dependent RNA helicase DHX30 OS=Bos taurus OX=9913 GN=DHX30 PE=2 SV=1 Length=1220 Score = 33.9 bits (76), Expect = 6.6, Method: Compositional matrix adjust. Identities = 44/183 (24%), Positives = 76/183 (42%), Gaps = 29/183 (16%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ-----STHMTQRDQQEVIQ 425 ++ R +L +L Q ++ V R Q +G S +++ DQ+ + Q Sbjct 685 VLHIDARGEPGGILCFLPGWQEIKGVQQRLQEALGMHESKYLILPVHSNIPMMDQKAIFQ 744 Query 426 KFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL-------LTNEIS-----------MVQ 467 + G +++AT++AE + I VV GL L ++S ++Q Sbjct 745 QPPIGVRKIVLATNIAETSITINDIVHVVDSGLHKEERYDLKTKVSCLETVWVSRANVIQ 804 Query 468 ARGRARADQSVYAFVATEGSRELKR------ELINEALETLMEQAVAAVQKMDQAEYQAK 521 RGRA QS +A+ SR K E++ LE L+ QA + + E+ +K Sbjct 805 RRGRAGRCQSGFAYHLFPRSRLEKMAPFQVPEILRTPLENLVLQAKIHMPEKTAVEFLSK 864 Query 522 IRD 524 D Sbjct 865 AVD 867 >sp|Q5WR10|DX39B_CANLF Spliceosome RNA helicase DDX39B OS=Canis lupus familiaris OX=9615 GN=DDX39B PE=3 SV=1 Length=428 Score = 33.5 bits (75), Expect = 6.7, Method: Compositional matrix adjust. Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 2/75 (3%) Query 400 AQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG 457 AQLL+ + + H M Q ++ Q+F+D +LVAT++ G+DI N+ Y Sbjct 304 AQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYD 363 Query 458 LLTNEISMVQARGRA 472 + + + + RA Sbjct 364 MPEDSDTYLHRVARA 378 >sp|Q5AJD0|DBP5_CANAL ATP-dependent RNA helicase DBP5 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DBP5 PE=3 SV=2 Length=540 Score = 33.5 bits (75), Expect = 6.7, Method: Compositional matrix adjust. Identities = 14/44 (32%), Positives = 27/44 (61%), Gaps = 0/44 (0%) Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE 462 D+ +I F++G +L+ T+V G+DI ++VV Y + T++ Sbjct 426 DRDRLIDDFREGRSKVLITTNVLARGIDIASVSMVVNYDMPTDK 469 >sp|A4R715|DHH1_PYRO7 ATP-dependent RNA helicase DHH1 OS=Pyricularia oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 GN=DHH1 PE=3 SV=2 Length=535 Score = 33.5 bits (75), Expect = 6.8, Method: Compositional matrix adjust. Identities = 31/119 (26%), Positives = 51/119 (43%), Gaps = 15/119 (13%) Query 369 RGII----FTRTRQSAH---SLLLWLQQQQGL------QTVDIRAQLLIGAGNSSQSTH- 414 RGI F +Q H +L LQ Q + V++ A+ + G S +H Sbjct 257 RGITQYYAFVEEKQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHA 316 Query 415 -MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA 472 M Q+ + V F++G LV + + G+DI NVV+ + N + + GR+ Sbjct 317 KMQQQARNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRS 375 >sp|A5DIX5|ROK1_PICGU ATP-dependent RNA helicase ROK1 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=ROK1 PE=3 SV=2 Length=537 Score = 33.5 bits (75), Expect = 6.8, Method: Compositional matrix adjust. Identities = 16/56 (29%), Positives = 30/56 (54%), Gaps = 0/56 (0%) Query 416 TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 T + ++E I++F++G +L+ T V G+D N+V+ Y + + V GR Sbjct 387 TPKQREEAIRRFKNGDAWVLITTDVLARGVDFKGVNLVINYDVPQTSQAYVHRIGR 442 Score = 33.5 bits (75), Expect = 8.5, Method: Compositional matrix adjust. Identities = 39/140 (28%), Positives = 61/140 (44%), Gaps = 13/140 (9%) Query 2 ELRSYQWEVIMPALEGKNIIIWLPTGAGKT------RAAAYVAKRHLETVDGAKVVVLVN 55 E + Q E I + EG+++I PTG+GKT A A ++ + G + VV+ Sbjct 128 EPTAIQCEAIPASAEGRDLIACAPTGSGKTLAYLIPMAQALISSPKTKNY-GIRGVVIAP 186 Query 56 RVHLVTQHGEEFRRMLDG-RWTVTTLSGDMG-PRAGFGHLARCHDLLICTAELLQMALTS 113 L Q + M G VT LS + + A D+LICT + L Sbjct 187 TNELAIQIYQTLAPMCRGSNLNVTLLSKQVASKISSSIISANKFDVLICTP----LRLID 242 Query 114 PEEEEHVELTVFSLIVVDEC 133 ++E V+L+ +V+DE Sbjct 243 LVKKEQVDLSKVEHLVIDEA 262 >sp|Q18212|DX39B_CAEEL Spliceosome RNA helicase DDX39B homolog OS=Caenorhabditis elegans OX=6239 GN=hel-1 PE=1 SV=1 Length=425 Score = 33.5 bits (75), Expect = 6.8, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 34/74 (46%), Gaps = 2/74 (3%) Query 401 QLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL 458 QLL S + H M Q ++ Q F+D +LVAT + G+DI N+V Y + Sbjct 301 QLLTEQNFPSIAIHRQMAQEERLSRYQAFKDFQKRILVATDLFGRGMDIERVNIVFNYDM 360 Query 459 LTNEISMVQARGRA 472 + S + RA Sbjct 361 PEDSDSYLHRVARA 374 >sp|Q0DBS1|RH51_ORYSJ Putative DEAD-box ATP-dependent RNA helicase 51 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0535100 PE=3 SV=2 Length=590 Score = 33.5 bits (75), Expect = 6.8, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 60/157 (38%), Gaps = 41/157 (26%) Query 320 ILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQS 379 ++ +ERR L L+ K L+ E K+ + FSS NS + Sbjct 320 VIPSERRFLVLYAFLKKALS-------EKTKVMVF-------FSSCNSVK---------- 355 Query 380 AHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATS 439 H+ LL Q ++ DI QL Q + KF +L+ T+ Sbjct 356 FHAQLLNFIQ---IECYDIHGQL-------------KQHQRTSTFFKFHKAEHGILLCTN 399 Query 440 VAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARAD 475 VA GLDIP + +V+Y + GR AR D Sbjct 400 VAARGLDIPDVDYIVQYDPPDETKDYIHRVGRTARGD 436 >sp|Q89RY1|AROC_BRADU Chorismate synthase OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110) OX=224911 GN=aroC PE=3 SV=1 Length=362 Score = 33.5 bits (75), Expect = 6.9, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 6/68 (9%) Query 601 FKDWKPGGVISCRNCGEVWGLQMIYKSVKLPVLKVRSMLLETPQGRIQAKKW-----SRV 655 +D++ GG S R I + V LP +KVR L++ +I +KW +R Sbjct 123 LRDYRGGGRSSARETATRVAAGAIARKV-LPDVKVRGALVQMGPHKIDREKWDWDEVARN 181 Query 656 PFSVPDFD 663 PF PD D Sbjct 182 PFFCPDKD 189 >sp|Q6BME5|SUB2_DEBHA ATP-dependent RNA helicase SUB2 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=SUB2 PE=3 SV=2 Length=435 Score = 33.5 bits (75), Expect = 6.9, Method: Compositional matrix adjust. Identities = 35/143 (24%), Positives = 60/143 (42%), Gaps = 22/143 (15%) Query 336 NELAHLATHGPENPKLEMLEKILQRQFS----SSNSPRGIIFTRTRQSAHSLLLWLQQQQ 391 ++ A L HG + +++ EK R+ S S + IIF R+ Q A+ L Sbjct 260 DDEAKLTLHGLQQYYIKLDEKEKNRKLSDLLDSLEFNQVIIFVRSTQRANEL-------- 311 Query 392 GLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPH 449 +LL + S + H + Q ++ E + F++ + V+T V G+DI Sbjct 312 --------NKLLCSSNFPSIAVHSGLPQEERIERYKSFKEFNKRICVSTDVFGRGIDIER 363 Query 450 CNVVVRYGLLTNEISMVQARGRA 472 N+ + Y L + GRA Sbjct 364 INLAINYDLPNEADQYLHRVGRA 386 >sp|P0CQ70|IF4A_CRYNJ ATP-dependent RNA helicase eIF4A OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=TIF1 PE=3 SV=1 Length=401 Score = 33.5 bits (75), Expect = 7.0, Method: Compositional matrix adjust. Identities = 20/97 (21%), Positives = 45/97 (46%), Gaps = 14/97 (14%) Query 362 FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ 421 + + + +IF TR+ WL QQ + + S+ M Q +++ Sbjct 262 YETVTITQAVIFCSTRRKVD----WLTQQLHDRQFTV----------SAMHGDMKQEERE 307 Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL 458 ++++F+ G+ +L+ T + G+D+ ++V+ Y L Sbjct 308 VIMKEFRSGSSRVLITTDLLARGIDVQQVSLVINYDL 344 >sp|P0CQ71|IF4A_CRYNB ATP-dependent RNA helicase eIF4A OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=TIF1 PE=3 SV=1 Length=401 Score = 33.5 bits (75), Expect = 7.0, Method: Compositional matrix adjust. Identities = 20/97 (21%), Positives = 45/97 (46%), Gaps = 14/97 (14%) Query 362 FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ 421 + + + +IF TR+ WL QQ + + S+ M Q +++ Sbjct 262 YETVTITQAVIFCSTRRKVD----WLTQQLHDRQFTV----------SAMHGDMKQEERE 307 Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL 458 ++++F+ G+ +L+ T + G+D+ ++V+ Y L Sbjct 308 VIMKEFRSGSSRVLITTDLLARGIDVQQVSLVINYDL 344 >sp|Q75AE1|ROK1_EREGS ATP-dependent RNA helicase ROK1 OS=Eremothecium gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=ROK1 PE=3 SV=1 Length=569 Score = 33.5 bits (75), Expect = 7.0, Method: Compositional matrix adjust. Identities = 14/43 (33%), Positives = 26/43 (60%), Gaps = 0/43 (0%) Query 416 TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL 458 TQ ++++I++F+ G L L+ T V G+D N+V+ Y + Sbjct 409 TQVQREKIIERFKSGDLWCLICTDVLARGIDFKGINLVINYDV 451 >sp|A5DIP0|DHH1_PICGU ATP-dependent RNA helicase DHH1 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DHH1 PE=3 SV=1 Length=547 Score = 33.5 bits (75), Expect = 7.1, Method: Compositional matrix adjust. Identities = 20/79 (25%), Positives = 40/79 (51%), Gaps = 2/79 (3%) Query 396 VDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV 453 V++ A+ + G S +H M Q+ + +V +F+ G++ LV + + G+DI NVV Sbjct 279 VELLAKKITELGYSCYYSHAKMPQQARNKVFHEFRQGSVRTLVCSDLLTRGIDIQAVNVV 338 Query 454 VRYGLLTNEISMVQARGRA 472 + + + + GR+ Sbjct 339 INFDFPKTAETYLHRIGRS 357 >sp|Q0UU86|IF4A_PHANO ATP-dependent RNA helicase eIF4A OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) OX=321614 GN=TIF1 PE=3 SV=1 Length=396 Score = 33.5 bits (75), Expect = 7.3, Method: Compositional matrix adjust. Identities = 27/115 (23%), Positives = 54/115 (47%), Gaps = 18/115 (16%) Query 347 ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA 406 E+ KL+ L + + + + +IF TR+ WL + + + A Sbjct 246 EDWKLDTLSDL----YETVTITQAVIFCNTRRKVD----WLTDKLTARDFTVSAM----H 293 Query 407 GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN 461 G+ Q+ QRD ++++F+ G+ +L+AT + G+D+ ++V+ Y L N Sbjct 294 GDMDQA----QRDV--IMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPAN 342 >sp|A5DWJ1|FAL1_LODEL ATP-dependent RNA helicase FAL1 OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) OX=379508 GN=FAL1 PE=3 SV=1 Length=399 Score = 33.5 bits (75), Expect = 7.3, Method: Compositional matrix adjust. Identities = 14/58 (24%), Positives = 32/58 (55%), Gaps = 0/58 (0%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA 472 M Q ++ ++ F+ G +L++T V G+D+ ++V+ Y L ++ + + GR+ Sbjct 299 MKQEERDAIMNDFRSGNSRVLISTDVWARGIDVQQISLVINYDLPLDKENYIHRIGRS 356 >sp|Q4HW67|DHH1_GIBZE ATP-dependent RNA helicase DHH1 OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=DHH1 PE=3 SV=2 Length=522 Score = 33.5 bits (75), Expect = 7.3, Method: Compositional matrix adjust. Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 15/119 (13%) Query 369 RGII----FTRTRQSAH---SLLLWLQQQQGL------QTVDIRAQLLIGAGNSSQSTH- 414 RGI F +Q H +L LQ Q + V++ A+ + G S +H Sbjct 259 RGITQYYAFVEEKQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHA 318 Query 415 -MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA 472 M Q + V F++G LV + + G+DI NVV+ + N + + GR+ Sbjct 319 KMQQHARNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRS 377 >sp|Q2U5A2|DHH1_ASPOR ATP-dependent RNA helicase dhh1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=dhh1 PE=3 SV=1 Length=511 Score = 33.5 bits (75), Expect = 7.4, Method: Compositional matrix adjust. Identities = 31/119 (26%), Positives = 51/119 (43%), Gaps = 15/119 (13%) Query 369 RGII----FTRTRQSAH---SLLLWLQQQQGL------QTVDIRAQLLIGAGNSSQSTH- 414 RGI F +Q H +L LQ Q + V++ A+ + G S +H Sbjct 257 RGITQYYAFVEEKQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHA 316 Query 415 -MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA 472 M Q+ + V F++G LV + + G+DI NVV+ + N + + GR+ Sbjct 317 RMLQQHRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRS 375 >sp|Q2HCV7|ROK1_CHAGB ATP-dependent RNA helicase ROK1 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=ROK1 PE=3 SV=1 Length=667 Score = 33.5 bits (75), Expect = 7.5, Method: Compositional matrix adjust. Identities = 20/79 (25%), Positives = 40/79 (51%), Gaps = 4/79 (5%) Query 397 DIRAQLLIGAGNSSQS----THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNV 452 +++ + + AG S++ + M + +++ +F+ G + +LV T V G+D N Sbjct 458 ELKYDIPLEAGGSARVAVLHSSMADSARSKIMARFRAGEVWVLVTTDVLARGVDFAGVNG 517 Query 453 VVRYGLLTNEISMVQARGR 471 VV Y + T+ + V GR Sbjct 518 VVNYDVPTSAAAYVHRAGR 536 >sp|P35683|IF4A1_ORYSJ Eukaryotic initiation factor 4A-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0701100 PE=2 SV=2 Length=414 Score = 33.5 bits (75), Expect = 7.7, Method: Compositional matrix adjust. Identities = 23/104 (22%), Positives = 48/104 (46%), Gaps = 18/104 (17%) Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQ 428 +IF TR+ WL + + G ++ +TH M Q + ++++F+ Sbjct 284 VIFVNTRRKVD----WLTDK------------MRGRDHTVSATHGDMDQNTRDIIMREFR 327 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA 472 G+ +L+ T + G+D+ ++V+ Y L T + + GR+ Sbjct 328 SGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRS 371 >sp|O48534|DEXHD_ARATH DExH-box ATP-dependent RNA helicase DExH13 OS=Arabidopsis thaliana OX=3702 GN=BRR2B PE=2 SV=1 Length=2172 Score = 33.9 bits (76), Expect = 7.8, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 30/51 (59%), Gaps = 3/51 (6%) Query 19 NIIIWLPTGAGKTRAAAY-VAKRHLETVDGAKVVVLVNRVHLVTQHGEEFR 68 N+++ PTG+GKT A + + + HLE D A VV + + + + E+FR Sbjct 1369 NVVVAAPTGSGKTICAEFAILRNHLEGPDSAMRVVYIAPLEAIAK--EQFR 1417 >sp|P0CQ96|SUB2_CRYNJ ATP-dependent RNA helicase SUB2 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=SUB2 PE=3 SV=1 Length=442 Score = 33.5 bits (75), Expect = 8.0, Method: Compositional matrix adjust. Identities = 20/65 (31%), Positives = 31/65 (48%), Gaps = 1/65 (2%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG-AKVVVLVNRVHLVTQHGE 65 Q E I A+ G +++ +G GKT A + +E VDG +++L + L Q Sbjct 86 QQECIPQAILGTDVLCQAKSGMGKTAVFVLAALQQIEPVDGEVSIIILCHTRELAYQIKN 145 Query 66 EFRRM 70 EF R Sbjct 146 EFTRF 150 >sp|P0CQ97|SUB2_CRYNB ATP-dependent RNA helicase SUB2 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=SUB2 PE=3 SV=1 Length=442 Score = 33.5 bits (75), Expect = 8.0, Method: Compositional matrix adjust. Identities = 20/65 (31%), Positives = 31/65 (48%), Gaps = 1/65 (2%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG-AKVVVLVNRVHLVTQHGE 65 Q E I A+ G +++ +G GKT A + +E VDG +++L + L Q Sbjct 86 QQECIPQAILGTDVLCQAKSGMGKTAVFVLAALQQIEPVDGEVSIIILCHTRELAYQIKN 145 Query 66 EFRRM 70 EF R Sbjct 146 EFTRF 150 >sp|A3GH91|DBP5_PICST ATP-dependent RNA helicase DBP5 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) OX=322104 GN=DBP5 PE=3 SV=2 Length=500 Score = 33.5 bits (75), Expect = 8.0, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 10/64 (16%) Query 416 TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARAD 475 ++RD+ +I F++G +L+ T+V G+DI ++VV Y L T++ AD Sbjct 385 SERDR--LIDDFREGRSKVLITTNVLARGIDIASVSMVVNYDLPTDK--------DGNAD 434 Query 476 QSVY 479 S Y Sbjct 435 PSTY 438 >sp|Q975X3|CDC61_SULTO ORC1-type DNA replication protein 1 OS=Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) OX=273063 GN=cdc6-1 PE=3 SV=1 Length=398 Score = 33.1 bits (74), Expect = 8.0, Method: Compositional matrix adjust. Identities = 37/148 (25%), Positives = 63/148 (43%), Gaps = 31/148 (21%) Query 9 EVIMPALEGK---NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 E++ P + G+ NI I+ TG GKT +V K+ E + + + V +N Q Sbjct 45 EILSPLMRGEKPNNIFIYGLTGTGKTAVTKFVVKKLHEKISNSFIYVYIN----TRQTDT 100 Query 66 EFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF 125 +R + D L ++G + F I TAEL + + ++ +EL Sbjct 101 PYRILAD-------LLENLGSKVPFTG--------ISTAELYRRFI-----KKVLELKPI 140 Query 126 SLIVVDECHHTHK----DTVYNVIMSQY 149 +IV+DE K D +Y + + Y Sbjct 141 LVIVLDEIDALVKKHGDDILYRLTRANY 168 >sp|A3GFI4|IF4A_PICST ATP-dependent RNA helicase eIF4A OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) OX=322104 GN=TIF1 PE=3 SV=1 Length=397 Score = 33.1 bits (74), Expect = 8.1, Method: Compositional matrix adjust. Identities = 12/48 (25%), Positives = 31/48 (65%), Gaps = 0/48 (0%) Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE 462 + Q ++ ++++F+ G+ +L+AT + G+D+ ++V+ Y L +N+ Sbjct 296 LPQAERDTIMKEFRSGSSRILIATDLLARGIDVQQVSLVINYDLPSNK 343 >sp|Q1DQ20|IF4A_COCIM ATP-dependent RNA helicase eIF4A OS=Coccidioides immitis (strain RS) OX=246410 GN=TIF1 PE=3 SV=1 Length=398 Score = 33.1 bits (74), Expect = 8.1, Method: Compositional matrix adjust. Identities = 14/53 (26%), Positives = 30/53 (57%), Gaps = 0/53 (0%) Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN 461 S+ M Q + ++++F+ G+ +L+AT + G+D+ ++V+ Y L N Sbjct 292 SAMHGEMEQNQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPAN 344 >sp|F4ZCI3|NNHA_MYCS0 2-nitroimidazole nitrohydrolase OS=Mycobacterium sp. (strain JS330) OX=1004011 GN=nnhA PE=1 SV=1 Length=379 Score = 33.1 bits (74), Expect = 8.2, Method: Compositional matrix adjust. Identities = 24/94 (26%), Positives = 39/94 (41%), Gaps = 3/94 (3%) Query 421 QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYA 480 E + K+ TLN+ ++ E ++ CN++ L+T + RG DQ V A Sbjct 172 SEYLAKWAWNTLNIPPLVAITEGAMEPGACNMIADEVLVTCLSASYDQRG---TDQLVAA 228 Query 481 FVATEGSRELKRELINEALETLMEQAVAAVQKMD 514 T G+ E + A+E +A A D Sbjct 229 ISKTSGTEEFHNLQLRPAVEGFFNKATGACAHPD 262 >sp|Q0CXD0|IF4A_ASPTN ATP-dependent RNA helicase eIF4A OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=tif1 PE=3 SV=2 Length=396 Score = 33.1 bits (74), Expect = 8.2, Method: Compositional matrix adjust. Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 14/100 (14%) Query 362 FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ 421 + + + +IF TR+ WL + + + A G+ QS QRD Sbjct 257 YETVTITQAVIFCNTRRKVD----WLTDKLTARDFTVSAM----HGDMEQS----QRDI- 303 Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN 461 ++++F+ G+ +L+AT + G+D+ ++V+ Y L N Sbjct 304 -IMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPAN 342 >sp|Q7XMK8|RH6_ORYSJ DEAD-box ATP-dependent RNA helicase 6 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0533000 PE=2 SV=1 Length=498 Score = 33.5 bits (75), Expect = 8.3, Method: Compositional matrix adjust. Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 11/111 (10%) Query 373 FTRTRQSAH---SLLLWLQQQQGL------QTVDIRAQLLIGAGNSSQSTH--MTQRDQQ 421 F RQ H +L LQ Q + V++ A+ + G S H M Q + Sbjct 342 FVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRN 401 Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA 472 V F++G LV T + G+DI NVV+ + + + + GR+ Sbjct 402 RVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKSAETYLHRVGRS 452 >sp|Q8SQM5|IF4A_ENCCU ATP-dependent RNA helicase eIF4A OS=Encephalitozoon cuniculi (strain GB-M1) OX=284813 GN=TIF1 PE=1 SV=1 Length=425 Score = 33.1 bits (74), Expect = 8.4, Method: Compositional matrix adjust. Identities = 24/105 (23%), Positives = 50/105 (48%), Gaps = 18/105 (17%) Query 349 PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN 408 PKL L I ++Q + I+F +++ A + WL + + +L+ Sbjct 276 PKLVTLYDIFRKQ----RLGQSIVFINSKEDARIVYDWLIRHEW------ECELI----- 320 Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV 453 S +TQ +++ + +F+ GT L+++ + G+DI + +VV Sbjct 321 ---SAELTQAERERTLNRFRGGTGRCLISSGLLSRGIDIQNLSVV 362 >sp|A1CJT5|IF4A_ASPCL ATP-dependent RNA helicase eIF4A OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=tif1 PE=3 SV=1 Length=398 Score = 33.1 bits (74), Expect = 8.4, Method: Compositional matrix adjust. Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 14/100 (14%) Query 362 FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ 421 + + + +IF TR+ WL + + + A G+ QS QRD Sbjct 259 YETVTITQAVIFCNTRRKVD----WLTDKLTARDFTVSAM----HGDMEQS----QRDV- 305 Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN 461 ++++F+ G+ +L+AT + G+D+ ++V+ Y L N Sbjct 306 -IMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPAN 344 >sp|Q0UWC8|PRP28_PHANO Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) OX=321614 GN=PRP28 PE=3 SV=1 Length=746 Score = 33.5 bits (75), Expect = 8.5, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 46/89 (52%), Gaps = 3/89 (3%) Query 397 DIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV 454 D A+ + G SS + H TQ ++ + + ++ +++LVAT +A G+DI ++VV Sbjct 609 DAIARDIKNMGFSSVTLHGSKTQEQREAALAQLREHRVDVLVATDLAGRGIDITDVSLVV 668 Query 455 RYGLLTNEISMVQARGR-ARADQSVYAFV 482 + + T+ S GR RA +S A Sbjct 669 NFNMATSIESYTHRIGRTGRAGKSGVAIT 697 >sp|Q1RKN3|TLH2_SCHPO ATP-dependent DNA helicase tlh2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=tlh2 PE=2 SV=1 Length=1919 Score = 33.5 bits (75), Expect = 8.7, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 13/132 (10%) Query 354 LEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQST 413 L +++R R IIF RT++ + L Q + I G+ S Sbjct 1402 LRTLMKRTKVFEGDGRAIIFCRTKKDVEYIHRRLHQSDLFA----HTHVTIYTGDVSDE- 1456 Query 414 HMTQRDQQEVIQKFQD--GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 ++Q F++ G +++AT G++ +VV YGL + + VQ GR Sbjct 1457 -----ERQMNFDAFRNANGKTRIMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQETGR 1511 Query 472 ARADQSVYAFVA 483 A D YA A Sbjct 1512 AGRDGK-YAIAA 1522 >sp|Q6H7S2|RH8_ORYSJ DEAD-box ATP-dependent RNA helicase 8 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0641800 PE=2 SV=2 Length=508 Score = 33.1 bits (74), Expect = 8.7, Method: Compositional matrix adjust. Identities = 29/111 (26%), Positives = 45/111 (41%), Gaps = 11/111 (10%) Query 373 FTRTRQSAH---SLLLWLQQQQGL------QTVDIRAQLLIGAGNSSQSTH--MTQRDQQ 421 F RQ H +L LQ Q + V++ A+ + G S H M Q + Sbjct 352 FVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRN 411 Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA 472 V F++G LV T + G+DI NVV+ + + + GR+ Sbjct 412 RVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKTAETYLHRVGRS 462 >sp|P0CT33|TLH1_SCHPO ATP-dependent DNA helicase tlh1 (Fragment) OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=tlh1 PE=3 SV=1 Length=1887 Score = 33.5 bits (75), Expect = 8.7, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 54/132 (41%), Gaps = 13/132 (10%) Query 354 LEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQST 413 L +++R R IIF RT++ + L Q + + I G+ S Sbjct 1402 LRTLMKRTKVFEGDGRAIIFCRTKKDVEYIHRRLHQSD----LFAHTHVTIYTGDVSDE- 1456 Query 414 HMTQRDQQEVIQKFQD--GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 ++Q F++ G +++AT G++ +VV YGL + + VQ GR Sbjct 1457 -----ERQMNFDAFRNANGKTRIMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQETGR 1511 Query 472 ARADQSVYAFVA 483 A D YA A Sbjct 1512 AGRDGK-YAIAA 1522 >sp|Q4IBS2|MAK5_GIBZE ATP-dependent RNA helicase MAK5 OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=MAK5 PE=3 SV=2 Length=781 Score = 33.5 bits (75), Expect = 8.8, Method: Compositional matrix adjust. Identities = 19/71 (27%), Positives = 37/71 (52%), Gaps = 1/71 (1%) Query 413 THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR- 471 + M Q+ + +++F ++L+AT VA GLDI + V+ Y + + + + GR Sbjct 538 SQMAQKARHRSLERFTASRNSILIATDVAARGLDIKEVDQVLHYHVPRSADTYIHRSGRT 597 Query 472 ARADQSVYAFV 482 AR + S + + Sbjct 598 ARGESSGISVI 608 >sp|Q91VR5|DDX1_MOUSE ATP-dependent RNA helicase DDX1 OS=Mus musculus OX=10090 GN=Ddx1 PE=1 SV=1 Length=740 Score = 33.5 bits (75), Expect = 8.9, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 56/122 (46%), Gaps = 12/122 (10%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQR--DQQEVIQK 426 + IIF RT+ +L + QQ G D + S H ++ ++++ +++ Sbjct 508 QAIIFCRTKIDCDNLEQYFMQQGG--GPDKKGHQF-----SCVCLHGDRKPHERKQNLER 560 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYA--FVA 483 F+ G + L+ T VA G+DI V+ L + + V GR RA++ A VA Sbjct 561 FKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA 620 Query 484 TE 485 TE Sbjct 621 TE 622 >sp|A5DUB2|MAK5_LODEL ATP-dependent RNA helicase MAK5 OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) OX=379508 GN=MAK5 PE=3 SV=1 Length=855 Score = 33.5 bits (75), Expect = 8.9, Method: Compositional matrix adjust. Identities = 22/67 (33%), Positives = 36/67 (54%), Gaps = 5/67 (7%) Query 413 THMTQRDQQEVIQKFQDGT----LNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 + M Q+ + +++F+D + +LVA+ VA GLDIP+ + V Y L + + Sbjct 556 SSMIQKQRLRSLERFKDASEKNQTAVLVASDVAARGLDIPNIDHVAHYHLPRSADVYIHR 615 Query 469 RGR-ARA 474 GR ARA Sbjct 616 SGRTARA 622 >sp|B8DJT9|UVRB_NITV9 UvrABC system protein B OS=Nitratidesulfovibrio vulgaris (strain DSM 19637 / Miyazaki F) OX=883 GN=uvrB PE=3 SV=1 Length=680 Score = 33.5 bits (75), Expect = 9.0, Method: Compositional matrix adjust. Identities = 18/55 (33%), Positives = 30/55 (55%), Gaps = 5/55 (9%) Query 423 VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 +IQ + ++LV ++ EGLDIP ++V + G L + S++Q GRA Sbjct 489 IIQALRRKEFDVLVGINLLREGLDIPEVSLVSILDADKEGFLRSAGSLIQTFGRA 543 >sp|Q818H2|CSHB_BACCR DEAD-box ATP-dependent RNA helicase CshB OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711) OX=226900 GN=cshB PE=2 SV=1 Length=436 Score = 33.1 bits (74), Expect = 9.0, Method: Compositional matrix adjust. Identities = 34/137 (25%), Positives = 63/137 (46%), Gaps = 22/137 (16%) Query 370 GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD 429 ++FT T++ A + L ++ GL+ I L + RD+++++++ +D Sbjct 249 AVVFTNTKKMADQVADGLMER-GLKVGRIHGDL-------------SPRDRKKMMKQIRD 294 Query 430 GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSR 488 +VAT +A G+DI + V+ Y ++ V R ARA S A + + Sbjct 295 LEFQYIVATDLAARGIDIQGISHVINYQPPSDLDFFVHRVARTARAGHSGIAVTIYDPAN 354 Query 489 ELKRELINEALETLMEQ 505 E EAL++L +Q Sbjct 355 E-------EALDSLEKQ 364 >sp|Q03099|YMN3_YEAST Y' element ATP-dependent helicase YML133C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=YML133C PE=2 SV=1 Length=1374 Score = 33.5 bits (75), Expect = 9.2, Method: Compositional matrix adjust. Identities = 15/45 (33%), Positives = 25/45 (56%), Gaps = 0/45 (0%) Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRAR 473 DG++ +L+ T + EG+DI +V+ N I ++Q GR R Sbjct 668 DGSMRVLIGTKLVTEGIDIKQLMMVIMLDNRLNIIELIQGVGRLR 712 >sp|Q99208|YL066_YEAST Y' element ATP-dependent helicase YLL066C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=YLL066C PE=2 SV=2 Length=1374 Score = 33.5 bits (75), Expect = 9.2, Method: Compositional matrix adjust. Identities = 15/45 (33%), Positives = 25/45 (56%), Gaps = 0/45 (0%) Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRAR 473 DG++ +L+ T + EG+DI +V+ N I ++Q GR R Sbjct 668 DGSMRVLIGTKLVTEGIDIKQLMMVIMLDNRLNIIELIQGVGRLR 712 >sp|Q6BY27|DBP2_DEBHA ATP-dependent RNA helicase DBP2 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DBP2 PE=3 SV=1 Length=536 Score = 33.1 bits (74), Expect = 9.3, Method: Compositional matrix adjust. Identities = 26/113 (23%), Positives = 58/113 (51%), Gaps = 11/113 (10%) Query 417 QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY---GLLTNEISMVQARGRAR 473 Q ++ V+++F+ G ++VAT VA G+D+ + V+ G + + + + GRA Sbjct 388 QGERDWVLKEFKTGKSPIMVATDVAARGIDVKGISYVINLDMPGNIEDYVHRIGRTGRAG 447 Query 474 ADQSVYAFVATEGSRELKREL---INEALETLMEQAVAAVQKMDQAEYQAKIR 523 + + +F T+ + +L +L + EA +T+ + + + D+ + + IR Sbjct 448 STGTAVSFF-TDNNSKLGGDLCKIMREANQTIPPE----LMRFDRRSFGSHIR 495 >sp|A6RY31|DHH1_BOTFB ATP-dependent RNA helicase dhh1 OS=Botryotinia fuckeliana (strain B05.10) OX=332648 GN=dhh1 PE=3 SV=1 Length=538 Score = 33.1 bits (74), Expect = 9.3, Method: Compositional matrix adjust. Identities = 21/79 (27%), Positives = 38/79 (48%), Gaps = 2/79 (3%) Query 396 VDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV 453 V++ A+ + G S +H M Q ++ V F++G LV + + G+DI NVV Sbjct 297 VELLAKKITELGYSCFYSHARMIQANRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVV 356 Query 454 VRYGLLTNEISMVQARGRA 472 + + N + + GR+ Sbjct 357 INFDFPKNAETYLHRIGRS 375 >sp|Q6NHI3|UVRB_CORDI UvrABC system protein B OS=Corynebacterium diphtheriae (strain ATCC 700971 / NCTC 13129 / Biotype gravis) OX=257309 GN=uvrB PE=3 SV=1 Length=681 Score = 33.1 bits (74), Expect = 9.6, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472 E++++ + G ++LV ++ EGLD+P ++V + G L + S++Q GRA Sbjct 492 ELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTKSLIQTIGRA 547 >sp|Q641Y8|DDX1_RAT ATP-dependent RNA helicase DDX1 OS=Rattus norvegicus OX=10116 GN=Ddx1 PE=1 SV=1 Length=740 Score = 33.1 bits (74), Expect = 9.7, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 56/122 (46%), Gaps = 12/122 (10%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQR--DQQEVIQK 426 + IIF RT+ +L + QQ G D + S H ++ ++++ +++ Sbjct 508 QAIIFCRTKIDCDNLEQYFMQQGG--GPDKKGHQF-----SCVCLHGDRKPHERKQNLER 560 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYA--FVA 483 F+ G + L+ T VA G+DI V+ L + + V GR RA++ A VA Sbjct 561 FKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA 620 Query 484 TE 485 TE Sbjct 621 TE 622 >sp|Q07888|YL067_YEAST Y' element ATP-dependent helicase YLL067C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=YLL067C PE=2 SV=2 Length=1374 Score = 33.5 bits (75), Expect = 9.8, Method: Compositional matrix adjust. Identities = 15/45 (33%), Positives = 25/45 (56%), Gaps = 0/45 (0%) Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRAR 473 DG++ +L+ T + EG+DI +V+ N I ++Q GR R Sbjct 668 DGSMRVLIGTKLVTEGIDIKQLMMVIMLDNRLNIIELIQGVGRLR 712 >sp|O13559|YRF14_YEAST Y' element ATP-dependent helicase protein 1 copy 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=YRF1-4 PE=2 SV=1 Length=1382 Score = 33.5 bits (75), Expect = 9.8, Method: Compositional matrix adjust. Identities = 15/45 (33%), Positives = 25/45 (56%), Gaps = 0/45 (0%) Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRAR 473 DG++ +L+ T + EG+DI +V+ N I ++Q GR R Sbjct 676 DGSMRVLIGTKLVTEGIDIKQLMMVIMLDNRLNIIELIQGVGRLR 720 >sp|P43538|YFG6_YEAST Y' element ATP-dependent helicase YFL066C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=YFL066C PE=2 SV=1 Length=392 Score = 33.1 bits (74), Expect = 9.8, Method: Compositional matrix adjust. Identities = 16/51 (31%), Positives = 26/51 (51%), Gaps = 0/51 (0%) Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVY 479 DG++ +L+ T + EG+DI +V+ N I ++Q GR R Y Sbjct 291 DGSMQVLIGTKLVTEGIDIKQLMMVIMLDNRLNIIELIQGVGRLRDGGLCY 341 >sp|Q66HG7|DDX59_RAT Probable ATP-dependent RNA helicase DDX59 OS=Rattus norvegicus OX=10116 GN=Ddx59 PE=2 SV=1 Length=589 Score = 33.1 bits (74), Expect = 10.0, Method: Compositional matrix adjust. Identities = 21/109 (19%), Positives = 52/109 (48%), Gaps = 3/109 (3%) Query 383 LLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAE 442 +L+++ + G + Q + G ++S + +Q +++E+++ +G ++V+T + Sbjct 417 VLVFVDCKLGADLLSEAVQKITGLSSTSIHSEKSQVERREILKGLLEGDYEVVVSTGILG 476 Query 443 EGLDIPHCNVVVRYGL---LTNEISMVQARGRARADQSVYAFVATEGSR 488 GLD+ + +VV + + L + V GR + + F+ R Sbjct 477 RGLDLVNVKLVVNFDMPSSLDEYVHQVGRVGRLGQNGTAITFINNNSKR 525 >sp|A7TT88|ROK1_VANPO ATP-dependent RNA helicase ROK1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 GN=ROK1 PE=3 SV=1 Length=570 Score = 33.1 bits (74), Expect = 10.0, Method: Compositional matrix adjust. Identities = 14/43 (33%), Positives = 25/43 (58%), Gaps = 0/43 (0%) Query 416 TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL 458 TQ + ++I++F+ G L L+ T V G+D N+V+ Y + Sbjct 416 TQVQRNKIIERFKSGDLWCLITTDVLARGVDFKGVNLVINYDV 458 Lambda K H a alpha 0.321 0.133 0.396 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 75046754048 Results from round 2 Query= sp|Q96C10|DHX58_HUMAN ATP-dependent RNA helicase DHX58 OS=Homo sapiens OX=9606 GN=DHX58 PE=1 SV=1 Length=678 Score E Sequences producing significant alignments: (Bits) Value Sequences used in model and found again: sp|Q96C10|DHX58_HUMAN ATP-dependent RNA helicase DHX58 OS=Homo sa... 894 0.0 sp|Q99J87|DHX58_MOUSE ATP-dependent RNA helicase DHX58 OS=Mus mus... 832 0.0 sp|Q9BYX4|IFIH1_HUMAN Interferon-induced helicase C domain-contai... 659 0.0 sp|Q8R5F7|IFIH1_MOUSE Interferon-induced helicase C domain-contai... 655 0.0 sp|O95786|RIGI_HUMAN Antiviral innate immune response receptor RI... 612 0.0 sp|Q6Q899|RIGI_MOUSE Antiviral innate immune response receptor RI... 595 0.0 sp|Q9GLV6|RIGI_PIG Antiviral innate immune response receptor RIG-... 583 0.0 sp|Q4WA22|DCL2_ASPFU Dicer-like protein 2 OS=Aspergillus fumigatu... 419 4e-130 sp|A1D9Z6|DCL2_NEOFI Dicer-like protein 2 OS=Neosartorya fischeri... 419 6e-130 sp|A1DE13|DCL1_NEOFI Dicer-like protein 1 OS=Neosartorya fischeri... 405 7e-124 sp|Q4WVE3|DCL1_ASPFU Dicer-like protein 1 OS=Aspergillus fumigatu... 401 1e-122 sp|A1CBC9|DCL1_ASPCL Dicer-like protein 1 OS=Aspergillus clavatus... 399 1e-121 sp|A2RAF3|DCL1_ASPNC Dicer-like protein 1 OS=Aspergillus niger (s... 397 5e-121 sp|Q2U6C4|DCL1_ASPOR Dicer-like protein 1 OS=Aspergillus oryzae (... 395 3e-120 sp|Q1DKI1|DCL1_COCIM Dicer-like protein 1 OS=Coccidioides immitis... 392 3e-119 sp|A1C9M6|DCL2_ASPCL Dicer-like protein 2 OS=Aspergillus clavatus... 389 1e-118 sp|Q0CW42|DCL1_ASPTN Dicer-like protein 1 OS=Aspergillus terreus ... 386 6e-117 sp|Q0CEI2|DCL2_ASPTN Dicer-like protein 2 OS=Aspergillus terreus ... 380 2e-115 sp|A1D4V5|MPH1_NEOFI ATP-dependent DNA helicase mph1 OS=Neosartor... 373 9e-115 sp|P0C5H7|DCL2_EMENI Dicer-like protein 2 OS=Emericella nidulans ... 378 1e-114 sp|Q4WKB5|MPH1_ASPFU ATP-dependent DNA helicase mph1 OS=Aspergill... 372 3e-114 sp|B0XMV6|MPH1_ASPFC ATP-dependent DNA helicase mph1 OS=Aspergill... 372 3e-114 sp|Q2URJ5|MPH1_ASPOR ATP-dependent DNA helicase mph1 OS=Aspergill... 372 4e-114 sp|A1CS00|MPH1_ASPCL ATP-dependent DNA helicase mph1 OS=Aspergill... 369 4e-113 sp|Q2VF18|DCL2_CRYPA Dicer-like protein 2 OS=Cryphonectria parasi... 373 1e-112 sp|A2Q8R2|MPH1_ASPNC ATP-dependent DNA helicase mph1 OS=Aspergill... 368 1e-112 sp|Q2UNX5|DCL2_ASPOR Dicer-like protein 2 OS=Aspergillus oryzae (... 372 1e-112 sp|Q0CWI2|MPH1_ASPTN ATP-dependent DNA helicase mph1 OS=Aspergill... 366 3e-112 sp|Q0UI93|DCL1_PHANO Dicer-like protein 1 OS=Phaeosphaeria nodoru... 364 4e-109 sp|A2R345|DCL21_ASPNC Dicer-like protein 2-1 OS=Aspergillus niger... 362 6e-109 sp|A4RHU9|DCL2_PYRO7 Dicer-like protein 2 OS=Pyricularia oryzae (... 362 1e-108 sp|Q5N870|DCL3A_ORYSJ Endoribonuclease Dicer homolog 3a OS=Oryza ... 364 1e-108 sp|Q2H0G2|DCL1_CHAGB Dicer-like protein 1 OS=Chaetomium globosum ... 362 4e-108 sp|Q7XD96|DCL3B_ORYSJ Endoribonuclease Dicer homolog 3b OS=Oryza ... 361 1e-107 sp|Q7S8J7|DCL1_NEUCR Dicer-like protein 1 OS=Neurospora crassa (s... 356 4e-106 sp|Q0UL22|DCL2_PHANO Dicer-like protein 2 OS=Phaeosphaeria nodoru... 353 1e-105 sp|Q2VF19|DCL1_CRYPA Dicer-like protein 1 OS=Cryphonectria parasi... 354 2e-105 sp|Q2HG76|MPH1_CHAGB ATP-dependent DNA helicase MPH1 OS=Chaetomiu... 349 2e-105 sp|Q9UT23|MPH1_SCHPO ATP-dependent DNA helicase fml1 OS=Schizosac... 342 3e-105 sp|A4RN08|MPH1_PYRO7 ATP-dependent DNA helicase MPH1 OS=Pyricular... 346 1e-104 sp|Q7SDF3|MPH1_NEUCR ATP-dependent DNA helicase mph1 OS=Neurospor... 342 1e-102 sp|Q6BRF0|MPH1_DEBHA ATP-dependent DNA helicase MPH1 OS=Debaryomy... 336 5e-101 sp|A4RKC3|DCL1_PYRO7 Dicer-like protein 1 OS=Pyricularia oryzae (... 342 6e-101 sp|Q1DY43|MPH1_COCIM ATP-dependent DNA helicase MPH1 OS=Coccidioi... 335 1e-100 sp|A6RIS1|MPH1_BOTFB ATP-dependent DNA helicase MPH1 OS=Botryotin... 335 1e-99 sp|Q8BGE5|FANCM_MOUSE Fanconi anemia group M protein homolog OS=M... 339 1e-99 sp|Q9SP32|DCL1_ARATH Endoribonuclease Dicer homolog 1 OS=Arabidop... 337 3e-99 sp|A7LFZ6|DCL4_ORYSJ Endoribonuclease Dicer homolog 4 OS=Oryza sa... 337 4e-99 sp|Q5A1A0|MPH1_CANAL ATP-dependent DNA helicase MPH1 OS=Candida a... 332 7e-99 sp|A7EFH4|MPH1_SCLS1 ATP-dependent DNA helicase mph1 OS=Sclerotin... 331 2e-98 sp|Q7SCC1|DCL2_NEUCR Dicer-like protein 2 OS=Neurospora crassa (s... 334 2e-98 sp|Q1DW80|DCL2_COCIM Dicer-like protein 2 OS=Coccidioides immitis... 332 4e-98 sp|A3GH78|MPH1_PICST ATP-dependent DNA helicase MPH1 OS=Scheffers... 327 8e-98 sp|P84634|DCL4_ARATH Dicer-like protein 4 OS=Arabidopsis thaliana... 327 9e-96 sp|Q9HE09|MFH2_SCHPO Putative ATP-dependent DNA helicase fml2 OS=... 315 2e-95 sp|Q3EBC8|DCL2_ARATH Endoribonuclease Dicer homolog 2 OS=Arabidop... 324 2e-95 sp|Q6TUI4|DICER_BOVIN Endoribonuclease Dicer OS=Bos taurus OX=991... 322 6e-94 sp|Q25BN1|DICER_CHICK Endoribonuclease Dicer OS=Gallus gallus OX=... 321 2e-93 sp|Q8IYD8|FANCM_HUMAN Fanconi anemia group M protein OS=Homo sapi... 320 3e-93 sp|Q8R418|DICER_MOUSE Endoribonuclease Dicer OS=Mus musculus OX=1... 319 5e-93 sp|Q9UPY3|DICER_HUMAN Endoribonuclease Dicer OS=Homo sapiens OX=9... 316 8e-92 sp|Q9VDA0|FANCM_DROME DEAD-box ATP-dependent DNA helicase Fancm O... 315 8e-92 sp|A0MQH0|DICER_CRIGR Endoribonuclease Dicer OS=Cricetulus griseu... 314 3e-91 sp|A0A1D5PRR9|FANCM_CHICK Fanconi anemia group M protein OS=Gallu... 314 3e-91 sp|Q6TV19|DICER_DANRE Endoribonuclease Dicer OS=Danio rerio OX=79... 313 8e-91 sp|B3DLA6|DICER_XENTR Endoribonuclease Dicer OS=Xenopus tropicali... 313 1e-90 sp|Q8LMR2|DCL1_ORYSJ Endoribonuclease Dicer homolog 1 OS=Oryza sa... 312 1e-90 sp|Q9LXW7|DCL3_ARATH Endoribonuclease Dicer homolog 3 OS=Arabidop... 310 4e-90 sp|Q69LX2|DCL2B_ORYSJ Endoribonuclease Dicer homolog 2b OS=Oryza ... 309 5e-90 sp|Q09884|DCR1_SCHPO Protein Dicer OS=Schizosaccharomyces pombe (... 309 7e-90 sp|Q10HL3|DCL2A_ORYSJ Endoribonuclease Dicer homolog 2a OS=Oryza ... 308 1e-89 sp|A2QX45|DCL22_ASPNC Dicer-like protein 2-2 OS=Aspergillus niger... 307 2e-89 sp|I3XHK1|FANCM_ARATH DEAD-box ATP-dependent RNA helicase FANCM O... 307 4e-89 sp|Q75AA7|MPH1_EREGS ATP-dependent DNA helicase MPH1 OS=Eremothec... 302 1e-88 sp|P34529|DCR1_CAEEL Endoribonuclease dcr-1 OS=Caenorhabditis ele... 304 1e-87 sp|A7TSV4|MPH1_VANPO ATP-dependent DNA helicase MPH1 OS=Vanderwal... 289 3e-84 sp|Q6CQX2|MPH1_KLULA ATP-dependent DNA helicase MPH1 OS=Kluyverom... 289 4e-84 sp|Q58900|Y1505_METJA Putative ATP-dependent RNA helicase MJ1505 ... 272 2e-79 sp|Q6FPQ3|MPH1_CANGA ATP-dependent DNA helicase MPH1 OS=Candida g... 275 6e-79 sp|A6ZVS0|MPH1_YEAS7 ATP-dependent DNA helicase MPH1 OS=Saccharom... 274 8e-79 sp|P40562|MPH1_YEAST ATP-dependent DNA helicase MPH1 OS=Saccharom... 270 1e-77 sp|A1ZAW0|DCR2_DROME Endoribonuclease Dcr-2 OS=Drosophila melanog... 260 6e-73 sp|Q7MGP7|RHLB_VIBVY ATP-dependent RNA helicase RhlB OS=Vibrio vu... 182 1e-49 sp|Q87KH5|RHLB_VIBPA ATP-dependent RNA helicase RhlB OS=Vibrio pa... 182 1e-49 sp|Q8DDN6|RHLB_VIBVU ATP-dependent RNA helicase RhlB OS=Vibrio vu... 182 2e-49 sp|A7MXT4|RHLB_VIBC1 ATP-dependent RNA helicase RhlB OS=Vibrio ca... 180 8e-49 sp|B7VME9|RHLB_VIBA3 ATP-dependent RNA helicase RhlB OS=Vibrio at... 175 5e-47 sp|A4STJ7|RHLB_AERS4 ATP-dependent RNA helicase RhlB OS=Aeromonas... 173 2e-46 sp|B5FF87|RHLB_ALIFM ATP-dependent RNA helicase RhlB OS=Aliivibri... 173 4e-46 sp|Q5E8U5|RHLB_ALIF1 ATP-dependent RNA helicase RhlB OS=Aliivibri... 172 4e-46 sp|A0KEG9|RHLB_AERHH ATP-dependent RNA helicase RhlB OS=Aeromonas... 171 1e-45 sp|C4LB49|RHLB_TOLAT ATP-dependent RNA helicase RhlB OS=Tolumonas... 169 6e-45 sp|Q15N18|RHLB_PSEA6 ATP-dependent RNA helicase RhlB OS=Pseudoalt... 168 1e-44 sp|Q65RG7|RHLB_MANSM ATP-dependent RNA helicase RhlB OS=Mannheimi... 166 5e-44 sp|Q970I2|XPB2_SULTO DNA 3'-5' translocase XPB2 OS=Sulfurisphaera... 166 7e-44 sp|C4K8M8|RHLB_HAMD5 ATP-dependent RNA helicase RhlB OS=Hamiltone... 156 3e-40 sp|A7TKR8|DED1_VANPO ATP-dependent RNA helicase DED1 OS=Vanderwal... 154 2e-38 sp|Q4I7K4|DED1_GIBZE ATP-dependent RNA helicase DED1 OS=Gibberell... 153 8e-38 sp|A7EJY3|DED1_SCLS1 ATP-dependent RNA helicase ded1 OS=Sclerotin... 152 2e-37 sp|A1CXK7|DED1_NEOFI ATP-dependent RNA helicase ded1 OS=Neosartor... 152 2e-37 sp|Q6CLR3|DED1_KLULA ATP-dependent RNA helicase DED1 OS=Kluyverom... 151 2e-37 sp|Q2HBE7|DED1_CHAGB ATP-dependent RNA helicase DED1 OS=Chaetomiu... 151 3e-37 sp|Q0UWA6|DED1_PHANO ATP-dependent RNA helicase DED1 OS=Phaeospha... 151 3e-37 sp|Q9P6U9|DED1_NEUCR ATP-dependent RNA helicase ded1 OS=Neurospor... 151 5e-37 sp|Q4WP13|DED1_ASPFU ATP-dependent RNA helicase ded1 OS=Aspergill... 151 5e-37 sp|Q2UGK3|DED1_ASPOR ATP-dependent RNA helicase ded1 OS=Aspergill... 151 5e-37 sp|A2QI25|DED1_ASPNC ATP-dependent RNA helicase ded1 OS=Aspergill... 151 5e-37 sp|A6SEH9|DED1_BOTFB ATP-dependent RNA helicase ded1 OS=Botryotin... 150 8e-37 sp|C8V8H4|DED1_EMENI ATP-dependent RNA helicase ded1 OS=Emericell... 149 1e-36 sp|A1CH78|DED1_ASPCL ATP-dependent RNA helicase ded1 OS=Aspergill... 149 2e-36 sp|Q1DJF0|DED1_COCIM ATP-dependent RNA helicase DED1 OS=Coccidioi... 148 3e-36 sp|Q4P733|DED1_USTMA ATP-dependent RNA helicase DED1 OS=Ustilago ... 148 5e-36 sp|Q0CLJ6|DED1_ASPTN ATP-dependent RNA helicase ded1 OS=Aspergill... 147 6e-36 sp|Q8LA13|RH11_ARATH DEAD-box ATP-dependent RNA helicase 11 OS=Ar... 146 7e-36 sp|O13370|DED1_SCHPO ATP-dependent RNA helicase ded1 OS=Schizosac... 146 8e-36 sp|Q8XA87|DEAD_ECO57 ATP-dependent RNA helicase DeaD OS=Escherich... 146 2e-35 sp|P0A9P8|DEAD_SHIFL ATP-dependent RNA helicase DeaD OS=Shigella ... 145 2e-35 sp|P0A9P6|DEAD_ECOLI ATP-dependent RNA helicase DeaD OS=Escherich... 145 2e-35 sp|P0A9P7|DEAD_ECOL6 ATP-dependent RNA helicase DeaD OS=Escherich... 145 2e-35 sp|Q6CB69|DED1_YARLI ATP-dependent RNA helicase DED1 OS=Yarrowia ... 144 6e-35 sp|Q2R1M8|RH52C_ORYSJ DEAD-box ATP-dependent RNA helicase 52C OS=... 143 8e-35 sp|P33906|DEAD_KLEPN ATP-dependent RNA helicase DeaD OS=Klebsiell... 143 1e-34 sp|A4RHF1|DED1_PYRO7 ATP-dependent RNA helicase DED1 OS=Pyricular... 143 1e-34 sp|Q75HJ0|RH37_ORYSJ DEAD-box ATP-dependent RNA helicase 37 OS=Or... 143 1e-34 sp|Q84W89|RH37_ARATH DEAD-box ATP-dependent RNA helicase 37 OS=Ar... 143 2e-34 sp|Q6FP38|DBP1_CANGA ATP-dependent RNA helicase DBP1 OS=Candida g... 142 2e-34 sp|Q6BU54|DED1_DEBHA ATP-dependent RNA helicase DED1 OS=Debaryomy... 142 2e-34 sp|P06634|DED1_YEAST ATP-dependent RNA helicase DED1 OS=Saccharom... 141 3e-34 sp|A6ZP47|DED1_YEAS7 ATP-dependent RNA helicase DED1 OS=Saccharom... 141 3e-34 sp|A5E0U9|DBP8_LODEL ATP-dependent RNA helicase DBP8 OS=Lodderomy... 139 3e-34 sp|A5DQS0|DED1_PICGU ATP-dependent RNA helicase DED1 OS=Meyerozym... 142 3e-34 sp|Q9VHP0|DDX3_DROME ATP-dependent RNA helicase bel OS=Drosophila... 141 1e-33 sp|Q1DHB2|PRP5_COCIM Pre-mRNA-processing ATP-dependent RNA helica... 141 1e-33 sp|Q6Z4K6|RH52B_ORYSJ DEAD-box ATP-dependent RNA helicase 52B OS=... 140 1e-33 sp|P44586|DEAD_HAEIN ATP-dependent RNA helicase DeaD OS=Haemophil... 139 1e-33 sp|P19109|DDX17_DROME ATP-dependent RNA helicase p62 OS=Drosophil... 140 2e-33 sp|Q89AF9|DEAD_BUCBP ATP-dependent RNA helicase DeaD OS=Buchnera ... 139 2e-33 sp|Q5A4E2|DED1_CANAL ATP-dependent RNA helicase DED1 OS=Candida a... 139 3e-33 sp|Q0CIQ3|RRP3_ASPTN ATP-dependent rRNA helicase rrp3 OS=Aspergil... 136 3e-33 sp|Q2H1Q8|RRP3_CHAGB ATP-dependent rRNA helicase RRP3 OS=Chaetomi... 136 7e-33 sp|A6R3L3|DED1_AJECN ATP-dependent RNA helicase DED1 OS=Ajellomyc... 138 8e-33 sp|Q59PR3|DBP8_CANAL ATP-dependent RNA helicase DBP8 OS=Candida a... 135 9e-33 sp|Q55804|CRHR_SYNY3 RNA helicase CrhR OS=Synechocystis sp. (stra... 136 1e-32 sp|Q2UNB7|RRP3_ASPOR ATP-dependent rRNA helicase rrp3 OS=Aspergil... 135 1e-32 sp|Q81IT9|CSHA_BACCR DEAD-box ATP-dependent RNA helicase CshA OS=... 136 1e-32 sp|Q6CXW0|DBP8_KLULA ATP-dependent RNA helicase DBP8 OS=Kluyverom... 134 1e-32 sp|Q4IFI0|RRP3_GIBZE ATP-dependent rRNA helicase RRP3 OS=Gibberel... 135 2e-32 sp|D0PV95|DDX3_CAEEL ATP-dependent RNA helicase laf-1 OS=Caenorha... 137 2e-32 sp|Q0DB53|RH52A_ORYSJ DEAD-box ATP-dependent RNA helicase 52A OS=... 136 3e-32 sp|P57453|DEAD_BUCAI ATP-dependent RNA helicase DeaD OS=Buchnera ... 135 3e-32 sp|Q0UK12|RRP3_PHANO ATP-dependent rRNA helicase RRP3 OS=Phaeosph... 134 3e-32 sp|A6QRQ7|RRP3_AJECN ATP-dependent rRNA helicase RRP3 OS=Ajellomy... 134 4e-32 sp|Q4A127|HSDR_STAS1 Type I restriction enzyme SsaAORF53P endonuc... 136 5e-32 sp|Q1E1N5|RRP3_COCIM ATP-dependent rRNA helicase RRP3 OS=Coccidio... 133 5e-32 sp|Q1DZK8|DBP3_COCIM ATP-dependent RNA helicase DBP3 OS=Coccidioi... 133 6e-32 sp|Q9LUW5|RH53_ARATH DEAD-box ATP-dependent RNA helicase 53, mito... 134 7e-32 sp|A1D405|RRP3_NEOFI ATP-dependent rRNA helicase rrp3 OS=Neosarto... 132 1e-31 sp|Q4WJE9|RRP3_ASPFU ATP-dependent rRNA helicase rrp3 OS=Aspergil... 132 1e-31 sp|Q5HJH8|HSDR_STAAC Type I restriction enzyme SauCOLORF180P endo... 135 1e-31 sp|Q0D8N0|RH53_ORYSJ DEAD-box ATP-dependent RNA helicase 53 OS=Or... 134 1e-31 sp|Q756G5|DBP8_EREGS ATP-dependent RNA helicase DBP8 OS=Eremothec... 131 1e-31 sp|P21507|SRMB_ECOLI ATP-dependent RNA helicase SrmB OS=Escherich... 131 1e-31 sp|Q7Y183|RH10_ORYSJ DEAD-box ATP-dependent RNA helicase 10 OS=Or... 131 2e-31 sp|A2XKG2|RH10_ORYSI DEAD-box ATP-dependent RNA helicase 10 OS=Or... 131 2e-31 sp|Q9P6N8|RRP3_SCHPO ATP-dependent rRNA helicase rrp3 OS=Schizosa... 131 3e-31 sp|A7EML8|RRP3_SCLS1 ATP-dependent rRNA helicase rrp3 OS=Scleroti... 131 3e-31 sp|P0CQ79|DBP3_CRYNB ATP-dependent RNA helicase DBP3 OS=Cryptococ... 132 4e-31 sp|A2RB17|RRP3_ASPNC ATP-dependent rRNA helicase rrp3 OS=Aspergil... 130 4e-31 sp|Q8GY84|RH10_ARATH DEAD-box ATP-dependent RNA helicase 10 OS=Ar... 130 4e-31 sp|Q6CCZ1|PRP5_YARLI Pre-mRNA-processing ATP-dependent RNA helica... 132 9e-31 sp|Q0ILZ4|RH9_ORYSJ DEAD-box ATP-dependent RNA helicase 9 OS=Oryz... 131 1e-30 sp|Q7SBC6|DBP2_NEUCR ATP-dependent RNA helicase dbp2 OS=Neurospor... 130 1e-30 sp|A3LP87|DBP8_PICST ATP-dependent RNA helicase DBP8 OS=Scheffers... 128 1e-30 sp|Q5VQL1|RH14_ORYSJ DEAD-box ATP-dependent RNA helicase 14 OS=Or... 131 2e-30 sp|A1CR32|RRP3_ASPCL ATP-dependent rRNA helicase rrp3 OS=Aspergil... 128 2e-30 sp|Q0UN57|PRP5_PHANO Pre-mRNA-processing ATP-dependent RNA helica... 132 2e-30 sp|Q5JKF2|RH40_ORYSJ DEAD-box ATP-dependent RNA helicase 40 OS=Or... 131 2e-30 sp|Q7RY59|RRP3_NEUCR ATP-dependent rRNA helicase rrp-3 OS=Neurosp... 129 2e-30 sp|Q0DM51|RH3_ORYSJ DEAD-box ATP-dependent RNA helicase 3, chloro... 131 2e-30 sp|Q9C551|RH5_ARATH DEAD-box ATP-dependent RNA helicase 5 OS=Arab... 129 3e-30 sp|Q9LUW6|RH9_ARATH DEAD-box ATP-dependent RNA helicase 9, mitoch... 129 3e-30 sp|A3LS22|RRP3_PICST ATP-dependent rRNA helicase RRP3 OS=Scheffer... 128 4e-30 sp|Q6YS30|RH5_ORYSJ DEAD-box ATP-dependent RNA helicase 5 OS=Oryz... 128 5e-30 sp|A0A1D6LAB7|RH3B_MAIZE DEAD-box ATP-dependent RNA helicase 3B, ... 129 5e-30 sp|Q4PHU9|DBP2_USTMA ATP-dependent RNA helicase DBP2 OS=Ustilago ... 128 6e-30 sp|A0A1D6GDY8|RH3A_MAIZE DEAD-box ATP-dependent RNA helicase 3A, ... 129 9e-30 sp|A6RW56|RRP3_BOTFB ATP-dependent rRNA helicase rrp3 OS=Botryoti... 126 1e-29 sp|Q54VT4|DDX47_DICDI Probable ATP-dependent RNA helicase ddx47 O... 127 2e-29 sp|P34580|DDX47_CAEEL Putative ATP-dependent RNA helicase T26G10.... 126 2e-29 sp|Q8L7S8|RH3_ARATH DEAD-box ATP-dependent RNA helicase 3, chloro... 127 2e-29 sp|Q6CH58|RRP3_YARLI ATP-dependent rRNA helicase RRP3 OS=Yarrowia... 124 4e-29 sp|Q6FNK8|RRP3_CANGA ATP-dependent rRNA helicase RRP3 OS=Candida ... 124 5e-29 sp|Q6CT85|RRP3_KLULA ATP-dependent rRNA helicase RRP3 OS=Kluyvero... 124 6e-29 sp|Q54CE0|DDX17_DICDI Probable ATP-dependent RNA helicase ddx17 O... 126 9e-29 sp|Q6FM43|PRP28_CANGA Pre-mRNA-splicing ATP-dependent RNA helicas... 124 1e-28 sp|P09052|VASA1_DROME ATP-dependent RNA helicase vasa OS=Drosophi... 124 2e-28 sp|A5DQF1|RRP3_PICGU ATP-dependent rRNA helicase RRP3 OS=Meyerozy... 123 2e-28 sp|Q4P3U9|RRP3_USTMA ATP-dependent rRNA helicase RRP3 OS=Ustilago... 123 2e-28 sp|Q75EW9|RRP3_EREGS ATP-dependent rRNA helicase RRP3 OS=Eremothe... 122 3e-28 sp|Q5ACU6|RRP3_CANAL ATP-dependent rRNA helicase RRP3 OS=Candida ... 122 3e-28 sp|Q6BQ61|RRP3_DEBHA ATP-dependent rRNA helicase RRP3 OS=Debaryom... 121 5e-28 sp|P44701|SRMB_HAEIN ATP-dependent RNA helicase SrmB OS=Haemophil... 121 5e-28 sp|A7TS37|RRP3_VANPO ATP-dependent rRNA helicase RRP3 OS=Vanderwa... 121 6e-28 sp|A6ZSX1|RRP3_YEAS7 ATP-dependent rRNA helicase RRP3 OS=Saccharo... 121 1e-27 sp|P38712|RRP3_YEAST ATP-dependent rRNA helicase RRP3 OS=Saccharo... 120 2e-27 sp|P0CR00|RRP3_CRYNJ ATP-dependent rRNA helicase RRP3 OS=Cryptoco... 119 2e-27 sp|P0CR01|RRP3_CRYNB ATP-dependent rRNA helicase RRP3 OS=Cryptoco... 119 2e-27 sp|Q9CWX9|DDX47_MOUSE Probable ATP-dependent RNA helicase DDX47 O... 119 3e-27 sp|Q9H0S4|DDX47_HUMAN Probable ATP-dependent RNA helicase DDX47 O... 118 4e-27 sp|Q29S22|DDX47_BOVIN Probable ATP-dependent RNA helicase DDX47 O... 118 6e-27 sp|Q9DF35|DD21A_XENLA Nucleolar RNA helicase 2-A OS=Xenopus laevi... 120 8e-27 sp|Q54TJ4|DDX27_DICDI Probable ATP-dependent RNA helicase ddx27 O... 119 2e-26 sp|Q9DF36|DD21B_XENLA Nucleolar RNA helicase 2-B OS=Xenopus laevi... 118 2e-26 sp|Q9VIF6|DDX47_DROME ATP-dependent RNA helicase DDX47 OS=Drosoph... 116 3e-26 sp|Q96GQ7|DDX27_HUMAN Probable ATP-dependent RNA helicase DDX27 O... 117 5e-26 sp|A1A4H6|DDX27_BOVIN Probable ATP-dependent RNA helicase DDX27 O... 116 9e-26 sp|O25029|RHPA_HELPY DEAD-box ATP-dependent RNA helicase RhpA OS=... 113 3e-25 sp|B9XXL6|RHPA_HELP8 DEAD-box ATP-dependent RNA helicase RhpA OS=... 112 4e-25 sp|A4RK80|PRP28_PYRO7 Pre-mRNA-splicing ATP-dependent RNA helicas... 112 1e-24 sp|P23394|PRP28_YEAST Pre-mRNA-splicing ATP-dependent RNA helicas... 112 2e-24 sp|Q09903|DRS1_SCHPO ATP-dependent RNA helicase drs1 OS=Schizosac... 111 6e-24 sp|Q4TVV3|DDX46_DANRE Probable ATP-dependent RNA helicase DDX46 O... 111 9e-24 sp|Q07736|T1RA_ECOLX Type I restriction enzyme EcoAI endonuclease... 109 2e-23 sp|Q5R6D8|DDX46_PONAB Probable ATP-dependent RNA helicase DDX46 O... 107 1e-22 sp|Q7L014|DDX46_HUMAN Probable ATP-dependent RNA helicase DDX46 O... 107 1e-22 sp|Q62780|DDX46_RAT Probable ATP-dependent RNA helicase DDX46 OS=... 107 1e-22 sp|Q569Z5|DDX46_MOUSE Probable ATP-dependent RNA helicase DDX46 O... 107 1e-22 sp|Q6BPT8|DBP6_DEBHA ATP-dependent RNA helicase DBP6 OS=Debaryomy... 106 1e-22 sp|Q914K8|Y022_SIFVH Putative helicase 22 OS=Sulfolobus islandicu... 104 6e-22 sp|Q9VCU9|DCR1_DROME Endoribonuclease Dcr-1 OS=Drosophila melanog... 101 9e-21 Sequences not found previously or not previously below threshold: sp|C3LQR1|RHLB_VIBCM ATP-dependent RNA helicase RhlB OS=Vibrio ch... 178 7e-48 sp|Q9KV52|RHLB_VIBCH ATP-dependent RNA helicase RhlB OS=Vibrio ch... 178 7e-48 sp|A5F3R4|RHLB_VIBC3 ATP-dependent RNA helicase RhlB OS=Vibrio ch... 178 7e-48 sp|Q2NQB2|RHLB_SODGM ATP-dependent RNA helicase RhlB OS=Sodalis g... 169 4e-45 sp|A1SZG4|RHLB_PSYIN ATP-dependent RNA helicase RhlB OS=Psychromo... 164 2e-43 sp|Q6LLL5|RHLB_PHOPR ATP-dependent RNA helicase RhlB OS=Photobact... 164 4e-43 sp|C6DHF5|RHLB_PECCP ATP-dependent RNA helicase RhlB OS=Pectobact... 162 2e-42 sp|Q0I1X0|RHLB_HISS1 ATP-dependent RNA helicase RhlB OS=Histophil... 161 3e-42 sp|B6EPA4|RHLB_ALISL ATP-dependent RNA helicase RhlB OS=Aliivibri... 162 3e-42 sp|Q6CZD9|RHLB_PECAS ATP-dependent RNA helicase RhlB OS=Pectobact... 161 4e-42 sp|B4F1V3|RHLB_PROMH ATP-dependent RNA helicase RhlB OS=Proteus m... 161 6e-42 sp|B0UUZ9|RHLB_HISS2 ATP-dependent RNA helicase RhlB OS=Histophil... 160 8e-42 sp|Q088J2|RHLB_SHEFN ATP-dependent RNA helicase RhlB OS=Shewanell... 160 1e-41 sp|A0KS84|RHLB_SHESA ATP-dependent RNA helicase RhlB OS=Shewanell... 159 4e-41 sp|A6VKC3|RHLB_ACTSZ ATP-dependent RNA helicase RhlB OS=Actinobac... 158 5e-41 sp|B1JQ11|RHLB_YERPY ATP-dependent RNA helicase RhlB OS=Yersinia ... 158 5e-41 sp|Q66G19|RHLB_YERPS ATP-dependent RNA helicase RhlB OS=Yersinia ... 158 5e-41 sp|A4TRC8|RHLB_YERPP ATP-dependent RNA helicase RhlB OS=Yersinia ... 158 5e-41 sp|Q1CNK3|RHLB_YERPN ATP-dependent RNA helicase RhlB OS=Yersinia ... 158 5e-41 sp|Q8ZAD8|RHLB_YERPE ATP-dependent RNA helicase RhlB OS=Yersinia ... 158 5e-41 sp|B2K046|RHLB_YERPB ATP-dependent RNA helicase RhlB OS=Yersinia ... 158 5e-41 sp|Q1CBQ4|RHLB_YERPA ATP-dependent RNA helicase RhlB OS=Yersinia ... 158 5e-41 sp|A7FD47|RHLB_YERP3 ATP-dependent RNA helicase RhlB OS=Yersinia ... 158 5e-41 sp|Q7MYL2|RHLB_PHOLL ATP-dependent RNA helicase RhlB OS=Photorhab... 158 5e-41 sp|Q0HQL1|RHLB_SHESR ATP-dependent RNA helicase RhlB OS=Shewanell... 158 5e-41 sp|Q0HN76|RHLB_SHESM ATP-dependent RNA helicase RhlB OS=Shewanell... 158 5e-41 sp|Q8EJQ5|RHLB_SHEON ATP-dependent RNA helicase RhlB OS=Shewanell... 158 7e-41 sp|B0TJ29|RHLB_SHEHH ATP-dependent RNA helicase RhlB OS=Shewanell... 156 2e-40 sp|A1RFB3|RHLB_SHESW ATP-dependent RNA helicase RhlB OS=Shewanell... 156 2e-40 sp|A4YB09|RHLB_SHEPC ATP-dependent RNA helicase RhlB OS=Shewanell... 156 2e-40 sp|A8GZJ0|RHLB_SHEPA ATP-dependent RNA helicase RhlB OS=Shewanell... 156 2e-40 sp|B2VG58|RHLB_ERWT9 ATP-dependent RNA helicase RhlB OS=Erwinia t... 156 2e-40 sp|B8CHZ1|RHLB_SHEPW ATP-dependent RNA helicase RhlB OS=Shewanell... 156 2e-40 sp|A8G828|RHLB_SERP5 ATP-dependent RNA helicase RhlB OS=Serratia ... 156 3e-40 sp|P0A2P0|RHLB_SALTY ATP-dependent RNA helicase RhlB OS=Salmonell... 155 4e-40 sp|P0A2P1|RHLB_SALTI ATP-dependent RNA helicase RhlB OS=Salmonell... 155 4e-40 sp|B4TNT3|RHLB_SALSV ATP-dependent RNA helicase RhlB OS=Salmonell... 155 4e-40 sp|C0Q2V9|RHLB_SALPC ATP-dependent RNA helicase RhlB OS=Salmonell... 155 4e-40 sp|A9MXF3|RHLB_SALPB ATP-dependent RNA helicase RhlB OS=Salmonell... 155 4e-40 sp|B4SZ26|RHLB_SALNS ATP-dependent RNA helicase RhlB OS=Salmonell... 155 4e-40 sp|B4TB13|RHLB_SALHS ATP-dependent RNA helicase RhlB OS=Salmonell... 155 4e-40 sp|B5RFS3|RHLB_SALG2 ATP-dependent RNA helicase RhlB OS=Salmonell... 155 4e-40 sp|B5QVH2|RHLB_SALEP ATP-dependent RNA helicase RhlB OS=Salmonell... 155 4e-40 sp|Q57HT6|RHLB_SALCH ATP-dependent RNA helicase RhlB OS=Salmonell... 155 4e-40 sp|B5EZ40|RHLB_SALA4 ATP-dependent RNA helicase RhlB OS=Salmonell... 155 4e-40 sp|A9L5D5|RHLB_SHEB9 ATP-dependent RNA helicase RhlB OS=Shewanell... 156 4e-40 sp|A6WTD3|RHLB_SHEB8 ATP-dependent RNA helicase RhlB OS=Shewanell... 156 4e-40 sp|A3D9I5|RHLB_SHEB5 ATP-dependent RNA helicase RhlB OS=Shewanell... 156 5e-40 sp|B8E670|RHLB_SHEB2 ATP-dependent RNA helicase RhlB OS=Shewanell... 156 5e-40 sp|B5FN74|RHLB_SALDC ATP-dependent RNA helicase RhlB OS=Salmonell... 155 6e-40 sp|A9MJ29|RHLB_SALAR ATP-dependent RNA helicase RhlB OS=Salmonell... 154 7e-40 sp|A4WG30|RHLB_ENT38 ATP-dependent RNA helicase RhlB OS=Enterobac... 154 9e-40 sp|B5BIS9|RHLB_SALPK ATP-dependent RNA helicase RhlB OS=Salmonell... 154 1e-39 sp|A3Q9R3|RHLB_SHELP ATP-dependent RNA helicase RhlB OS=Shewanell... 154 1e-39 sp|B1KQF6|RHLB_SHEWM ATP-dependent RNA helicase RhlB OS=Shewanell... 154 2e-39 sp|A7MQI2|RHLB_CROS8 ATP-dependent RNA helicase RhlB OS=Cronobact... 154 2e-39 sp|Q9CJS1|RHLB_PASMU ATP-dependent RNA helicase RhlB OS=Pasteurel... 154 2e-39 sp|Q329V8|RHLB_SHIDS ATP-dependent RNA helicase RhlB OS=Shigella ... 153 2e-39 sp|Q3YVI4|RHLB_SHISS ATP-dependent RNA helicase RhlB OS=Shigella ... 153 2e-39 sp|P0A8K0|RHLB_SHIFL ATP-dependent RNA helicase RhlB OS=Shigella ... 153 2e-39 sp|Q1R4F9|RHLB_ECOUT ATP-dependent RNA helicase RhlB OS=Escherich... 153 2e-39 sp|B6I4B6|RHLB_ECOSE ATP-dependent RNA helicase RhlB OS=Escherich... 153 2e-39 sp|P0A8J8|RHLB_ECOLI ATP-dependent RNA helicase RhlB OS=Escherich... 153 2e-39 sp|B1IWC0|RHLB_ECOLC ATP-dependent RNA helicase RhlB OS=Escherich... 153 2e-39 sp|P0A8J9|RHLB_ECOL6 ATP-dependent RNA helicase RhlB OS=Escherich... 153 2e-39 sp|Q0TAU3|RHLB_ECOL5 ATP-dependent RNA helicase RhlB OS=Escherich... 153 2e-39 sp|A1AHV0|RHLB_ECOK1 ATP-dependent RNA helicase RhlB OS=Escherich... 153 2e-39 sp|A8A6N4|RHLB_ECOHS ATP-dependent RNA helicase RhlB OS=Escherich... 153 2e-39 sp|B1X9Z4|RHLB_ECODH ATP-dependent RNA helicase RhlB OS=Escherich... 153 2e-39 sp|C4ZZ48|RHLB_ECOBW ATP-dependent RNA helicase RhlB OS=Escherich... 153 2e-39 sp|B7M5C7|RHLB_ECO8A ATP-dependent RNA helicase RhlB OS=Escherich... 153 2e-39 sp|B7MR01|RHLB_ECO81 ATP-dependent RNA helicase RhlB OS=Escherich... 153 2e-39 sp|B7L8B6|RHLB_ECO55 ATP-dependent RNA helicase RhlB OS=Escherich... 153 2e-39 sp|B7MGJ1|RHLB_ECO45 ATP-dependent RNA helicase RhlB OS=Escherich... 153 2e-39 sp|B7UMN5|RHLB_ECO27 ATP-dependent RNA helicase RhlB OS=Escherich... 153 2e-39 sp|A7ZTY2|RHLB_ECO24 ATP-dependent RNA helicase RhlB OS=Escherich... 153 2e-39 sp|Q31UK5|RHLB_SHIBS ATP-dependent RNA helicase RhlB OS=Shigella ... 153 3e-39 sp|B2TU12|RHLB_SHIB3 ATP-dependent RNA helicase RhlB OS=Shigella ... 153 3e-39 sp|B7NF85|RHLB_ECOLU ATP-dependent RNA helicase RhlB OS=Escherich... 153 3e-39 sp|B5YY28|RHLB_ECO5E ATP-dependent RNA helicase RhlB OS=Escherich... 153 3e-39 sp|Q0SYX0|RHLB_SHIF8 ATP-dependent RNA helicase RhlB OS=Shigella ... 153 3e-39 sp|B7LU75|RHLB_ESCF3 ATP-dependent RNA helicase RhlB OS=Escherich... 153 4e-39 sp|Q8XAT4|RHLB_ECO57 ATP-dependent RNA helicase RhlB OS=Escherich... 153 4e-39 sp|A8G0U0|RHLB_SHESH ATP-dependent RNA helicase RhlB OS=Shewanell... 153 4e-39 sp|B7NTG2|RHLB_ECO7I ATP-dependent RNA helicase RhlB OS=Escherich... 153 5e-39 sp|A8ACT3|RHLB_CITK8 ATP-dependent RNA helicase RhlB OS=Citrobact... 152 5e-39 sp|B1LLV3|RHLB_ECOSM ATP-dependent RNA helicase RhlB OS=Escherich... 152 5e-39 sp|B5XYY9|RHLB_KLEP3 ATP-dependent RNA helicase RhlB OS=Klebsiell... 152 5e-39 sp|A5UI36|RHLB_HAEIG ATP-dependent RNA helicase RhlB OS=Haemophil... 152 5e-39 sp|A6TGG9|RHLB_KLEP7 ATP-dependent RNA helicase RhlB OS=Klebsiell... 152 7e-39 sp|A5UDI1|RHLB_HAEIE ATP-dependent RNA helicase RhlB OS=Haemophil... 151 1e-38 sp|Q12S35|RHLB_SHEDO ATP-dependent RNA helicase RhlB OS=Shewanell... 151 2e-38 sp|A1SAL1|RHLB_SHEAM ATP-dependent RNA helicase RhlB OS=Shewanell... 149 1e-37 sp|P44922|RHLB_HAEIN ATP-dependent RNA helicase RhlB OS=Haemophil... 145 2e-36 sp|Q75B50|DED1_EREGS ATP-dependent RNA helicase DED1 OS=Eremothec... 148 3e-36 sp|Q5QYF8|RHLB_IDILO ATP-dependent RNA helicase RhlB OS=Idiomarin... 144 5e-36 sp|Q8TFK8|DED1_CANGA ATP-dependent RNA helicase DED1 OS=Candida g... 144 3e-35 sp|Q9M2F9|RH52_ARATH DEAD-box ATP-dependent RNA helicase 52 OS=Ar... 141 4e-34 sp|A3LQ01|DED1_PICST ATP-dependent RNA helicase DED1 OS=Scheffers... 141 6e-34 sp|Q62167|DDX3X_MOUSE ATP-dependent RNA helicase DDX3X OS=Mus mus... 138 5e-33 sp|A5DZE6|DED1_LODEL ATP-dependent RNA helicase DED1 OS=Lodderomy... 138 7e-33 sp|Q2U2J6|PRP5_ASPOR Pre-mRNA-processing ATP-dependent RNA helica... 139 8e-33 sp|Q3BNH8|RHLB_XANE5 ATP-dependent RNA helicase RhlB OS=Xanthomon... 137 8e-33 sp|Q8P4D4|RHLB_XANCP ATP-dependent RNA helicase RhlB OS=Xanthomon... 137 8e-33 sp|B0RWT6|RHLB_XANCB ATP-dependent RNA helicase RhlB OS=Xanthomon... 137 8e-33 sp|Q4UPY5|RHLB_XANC8 ATP-dependent RNA helicase RhlB OS=Xanthomon... 137 8e-33 sp|Q501J6|DDX17_MOUSE Probable ATP-dependent RNA helicase DDX17 O... 137 1e-32 sp|Q8PFZ3|RHLB_XANAC ATP-dependent RNA helicase RhlB OS=Xanthomon... 136 1e-32 sp|P24346|DDX3_XENLA Putative ATP-dependent RNA helicase an3 OS=X... 138 1e-32 sp|A1D373|PRP5_NEOFI Pre-mRNA-processing ATP-dependent RNA helica... 138 1e-32 sp|A1CQA9|PRP5_ASPCL Pre-mRNA-processing ATP-dependent RNA helica... 138 1e-32 sp|Q6HPE6|CSHA_BACHK DEAD-box ATP-dependent RNA helicase CshA OS=... 136 2e-32 sp|Q81VG0|CSHA_BACAN DEAD-box ATP-dependent RNA helicase CshA OS=... 136 2e-32 sp|A0R8U6|CSHA_BACAH DEAD-box ATP-dependent RNA helicase CshA OS=... 136 2e-32 sp|Q92841|DDX17_HUMAN Probable ATP-dependent RNA helicase DDX17 O... 137 2e-32 sp|Q73EU1|CSHA_BACC1 DEAD-box ATP-dependent RNA helicase CshA OS=... 135 2e-32 sp|Q63GX5|CSHA_BACCZ DEAD-box ATP-dependent RNA helicase CshA OS=... 135 2e-32 sp|O15523|DDX3Y_HUMAN ATP-dependent RNA helicase DDX3Y OS=Homo sa... 137 2e-32 sp|Q6CIV2|DBP2_KLULA ATP-dependent RNA helicase DBP2 OS=Kluyverom... 136 2e-32 sp|Q59LU0|DBP2_CANAL ATP-dependent RNA helicase DBP2 OS=Candida a... 135 2e-32 sp|Q5RF43|DDX3Y_PONAB ATP-dependent RNA helicase DDX3Y OS=Pongo a... 136 3e-32 sp|Q6GVM6|DDX3Y_PANTR ATP-dependent RNA helicase DDX3Y OS=Pan tro... 136 3e-32 sp|Q5GUR8|RHLB_XANOR ATP-dependent RNA helicase RhlB OS=Xanthomon... 135 4e-32 sp|O00571|DDX3X_HUMAN ATP-dependent RNA helicase DDX3X OS=Homo sa... 136 4e-32 sp|P16381|DDX3L_MOUSE Putative ATP-dependent RNA helicase Pl10 OS... 136 4e-32 sp|Q4WT99|PRP5_ASPFU Pre-mRNA-processing ATP-dependent RNA helica... 137 4e-32 sp|Q5BDW4|PRP5_EMENI Pre-mRNA-processing ATP-dependent RNA helica... 137 5e-32 sp|Q0D1K3|PRP5_ASPTN Pre-mRNA-processing ATP-dependent RNA helica... 136 5e-32 sp|G0SFM2|DBP2_CHATD ATP-dependent RNA helicase DBP2 OS=Chaetomiu... 134 5e-32 sp|Q9PA24|RHLB_XYLFA ATP-dependent RNA helicase RhlB OS=Xylella f... 134 5e-32 sp|A4RN46|PRP5_PYRO7 Pre-mRNA-processing ATP-dependent RNA helica... 136 6e-32 sp|Q62095|DDX3Y_MOUSE ATP-dependent RNA helicase DDX3Y OS=Mus mus... 135 7e-32 sp|Q8NYL9|HSDR_STAAW Type I restriction enzyme SauMW2ORF169P endo... 136 8e-32 sp|Q6GCT1|HSDR_STAAS Type I restriction enzyme SauMSSORF170P endo... 136 8e-32 sp|Q6GKB1|HSDR_STAAR Type I restriction enzyme SauMRSORF196P endo... 136 8e-32 sp|Q0UY62|DBP3_PHANO ATP-dependent RNA helicase DBP3 OS=Phaeospha... 134 8e-32 sp|Q7A801|HSDR_STAAN Type I restriction enzyme SauN315I endonucle... 136 8e-32 sp|Q99X26|HSDR_STAAM Type I restriction enzyme SauMu50ORF195P end... 136 8e-32 sp|A7ENE0|PRP5_SCLS1 Pre-mRNA-processing ATP-dependent RNA helica... 136 9e-32 sp|P24784|DBP1_YEAST ATP-dependent RNA helicase DBP1 OS=Saccharom... 134 9e-32 sp|A6ZWD3|DBP1_YEAS7 ATP-dependent RNA helicase DBP1 OS=Saccharom... 134 9e-32 sp|Q879Y6|RHLB_XYLFT ATP-dependent RNA helicase RhlB OS=Xylella f... 133 1e-31 sp|A2QQA8|PRP5_ASPNC Pre-mRNA-processing ATP-dependent RNA helica... 136 1e-31 sp|Q7SH33|PRP5_NEUCR Pre-mRNA-processing ATP-dependent RNA helica... 136 1e-31 sp|P24783|DBP2_YEAST ATP-dependent RNA helicase DBP2 OS=Saccharom... 133 1e-31 sp|A6ZRX0|DBP2_YEAS7 ATP-dependent RNA helicase DBP2 OS=Saccharom... 133 1e-31 sp|A6RW79|PRP5_BOTFB Pre-mRNA-processing ATP-dependent RNA helica... 135 2e-31 sp|A7TK63|DBP8_VANPO ATP-dependent RNA helicase DBP8 OS=Vanderwal... 131 2e-31 sp|Q8K9H6|DEAD_BUCAP ATP-dependent RNA helicase DeaD OS=Buchnera ... 133 2e-31 sp|P0CQ78|DBP3_CRYNJ ATP-dependent RNA helicase DBP3 OS=Cryptococ... 132 3e-31 sp|Q8SRB2|DBP2_ENCCU ATP-dependent RNA helicase DBP2 OS=Encephali... 131 3e-31 sp|Q6BGU8|DBP8_DEBHA ATP-dependent RNA helicase DBP8 OS=Debaryomy... 129 5e-31 sp|A6SFW7|DBP2_BOTFB ATP-dependent RNA helicase dbp2 OS=Botryotin... 131 6e-31 sp|P0CQ74|DED1_CRYNJ ATP-dependent RNA helicase ded1 OS=Cryptococ... 132 6e-31 sp|P0CQ75|DED1_CRYNB ATP-dependent RNA helicase ded1 OS=Cryptococ... 132 6e-31 sp|A7E449|DBP2_SCLS1 ATP-dependent RNA helicase dbp2 OS=Sclerotin... 131 7e-31 sp|Q2H720|DBP2_CHAGB ATP-dependent RNA helicase DBP2 OS=Chaetomiu... 131 7e-31 sp|Q6FLF3|DBP2_CANGA ATP-dependent RNA helicase DBP2 OS=Candida g... 131 7e-31 sp|A6RGE3|DBP2_AJECN ATP-dependent RNA helicase DBP2 OS=Ajellomyc... 130 9e-31 sp|Q5B5E7|RRP3_EMENI ATP-dependent rRNA helicase rrp3 OS=Emericel... 129 1e-30 sp|Q755N4|DBP2_EREGS ATP-dependent RNA helicase DBP2 OS=Eremothec... 130 1e-30 sp|Q6C4D4|DBP2_YARLI ATP-dependent RNA helicase DBP2 OS=Yarrowia ... 130 1e-30 sp|Q4X195|DBP2_ASPFU ATP-dependent RNA helicase dbp2 OS=Aspergill... 130 2e-30 sp|P38719|DBP8_YEAST ATP-dependent RNA helicase DBP8 OS=Saccharom... 128 2e-30 sp|A6ZT77|DBP8_YEAS7 ATP-dependent RNA helicase DBP8 OS=Saccharom... 128 2e-30 sp|Q5W5U4|DDX4_BOVIN Probable ATP-dependent RNA helicase DDX4 OS=... 131 2e-30 sp|Q2HAD8|PRP5_CHAGB Pre-mRNA-processing ATP-dependent RNA helica... 132 2e-30 sp|Q5B0J9|DBP2_EMENI ATP-dependent RNA helicase dbp2 OS=Emericell... 129 2e-30 sp|A1DGZ7|DBP2_NEOFI ATP-dependent RNA helicase dbp2 OS=Neosartor... 129 2e-30 sp|A5DLE0|DBP8_PICGU ATP-dependent RNA helicase DBP8 OS=Meyerozym... 127 2e-30 sp|A5E1W4|DBP3_LODEL ATP-dependent RNA helicase DBP3 OS=Lodderomy... 129 2e-30 sp|Q61496|DDX4_MOUSE ATP-dependent RNA helicase DDX4 OS=Mus muscu... 130 2e-30 sp|Q5R4I9|DDX5_PONAB Probable ATP-dependent RNA helicase DDX5 OS=... 130 3e-30 sp|Q61656|DDX5_MOUSE Probable ATP-dependent RNA helicase DDX5 OS=... 130 3e-30 sp|P17844|DDX5_HUMAN Probable ATP-dependent RNA helicase DDX5 OS=... 130 3e-30 sp|Q4PFD9|PRP5_USTMA Pre-mRNA-processing ATP-dependent RNA helica... 131 3e-30 sp|Q4IP34|PRP5_GIBZE Pre-mRNA-processing ATP-dependent RNA helica... 131 3e-30 sp|A6QXC1|DBP3_AJECN ATP-dependent RNA helicase DBP3 OS=Ajellomyc... 128 3e-30 sp|A7TJ36|DBP3_VANPO ATP-dependent RNA helicase DBP3 OS=Vanderwal... 128 4e-30 sp|A5A6J2|DDX5_PANTR Probable ATP-dependent RNA helicase DDX5 OS=... 129 4e-30 sp|Q9SA27|RH36_ARATH DEAD-box ATP-dependent RNA helicase 36 OS=Ar... 127 5e-30 sp|Q4R6M5|DDX5_MACFA Probable ATP-dependent RNA helicase DDX5 OS=... 129 6e-30 sp|Q3MSQ8|DDX4_PELLE Probable ATP-dependent RNA helicase DDX4 OS=... 129 6e-30 sp|A4QSS5|DBP2_PYRO7 ATP-dependent RNA helicase DBP2 OS=Pyricular... 128 6e-30 sp|Q5L3G9|CSHA_GEOKA DEAD-box ATP-dependent RNA helicase CshA OS=... 126 8e-30 sp|Q2U070|DBP2_ASPOR ATP-dependent RNA helicase dbp2 OS=Aspergill... 127 8e-30 sp|P96614|CSHA_BACSU DEAD-box ATP-dependent RNA helicase CshA OS=... 127 9e-30 sp|Q6GWX0|DDX4_PIG Probable ATP-dependent RNA helicase DDX4 OS=Su... 128 1e-29 sp|Q5AWA6|DBP3_EMENI ATP-dependent RNA helicase dbp3 OS=Emericell... 126 1e-29 sp|Q6C9P3|DBP3_YARLI ATP-dependent RNA helicase DBP3 OS=Yarrowia ... 127 1e-29 sp|Q8W4R3|RH30_ARATH DEAD-box ATP-dependent RNA helicase 30 OS=Ar... 127 1e-29 sp|Q1DP69|DBP2_COCIM ATP-dependent RNA helicase DBP2 OS=Coccidioi... 127 1e-29 sp|Q4R5S7|DDX4_MACFA Probable ATP-dependent RNA helicase DDX4 OS=... 128 1e-29 sp|Q9C718|RH20_ARATH DEAD-box ATP-dependent RNA helicase 20 OS=Ar... 126 2e-29 sp|A1C6C4|DBP2_ASPCL ATP-dependent RNA helicase dbp2 OS=Aspergill... 127 2e-29 sp|Q9NQI0|DDX4_HUMAN Probable ATP-dependent RNA helicase DDX4 OS=... 128 2e-29 sp|A2QC74|DBP2_ASPNC ATP-dependent RNA helicase dbp2 OS=Aspergill... 127 2e-29 sp|Q6FQZ0|DBP8_CANGA ATP-dependent RNA helicase DBP8 OS=Candida g... 125 2e-29 sp|Q8H136|RH14_ARATH DEAD-box ATP-dependent RNA helicase 14 OS=Ar... 127 2e-29 sp|Q5APT8|DBP3_CANAL ATP-dependent RNA helicase DBP3 OS=Candida a... 126 3e-29 sp|P24782|DBP2_SCHPO ATP-dependent RNA helicase dbp2 OS=Schizosac... 126 3e-29 sp|Q6BY27|DBP2_DEBHA ATP-dependent RNA helicase DBP2 OS=Debaryomy... 126 3e-29 sp|Q9LYJ9|RH46_ARATH DEAD-box ATP-dependent RNA helicase 46 OS=Ar... 127 3e-29 sp|Q5QMN3|RH20_ORYSJ DEAD-box ATP-dependent RNA helicase 20 OS=Or... 125 3e-29 sp|Q814I2|DBPA_BACCR ATP-dependent RNA helicase DbpA OS=Bacillus ... 125 3e-29 sp|Q7S5R1|DBP3_NEUCR ATP-dependent RNA helicase dbp-3 OS=Neurospo... 126 3e-29 sp|A4RGD1|RRP3_PYRO7 ATP-dependent rRNA helicase RRP3 OS=Pyricula... 126 4e-29 sp|Q4IJH1|DBP3_GIBZE ATP-dependent RNA helicase DBP3 OS=Gibberell... 126 4e-29 sp|A5DAC8|DBP3_PICGU ATP-dependent RNA helicase DBP3 OS=Meyerozym... 125 4e-29 sp|Q64060|DDX4_RAT Probable ATP-dependent RNA helicase DDX4 OS=Ra... 127 4e-29 sp|A5DL80|DBP2_PICGU ATP-dependent RNA helicase DBP2 OS=Meyerozym... 125 5e-29 sp|P9WH05|DEAD_MYCTU ATP-dependent RNA helicase DeaD OS=Mycobacte... 125 6e-29 sp|P9WH04|DEAD_MYCTO ATP-dependent RNA helicase DeaD OS=Mycobacte... 125 6e-29 sp|P20447|DBP3_YEAST ATP-dependent RNA helicase DBP3 OS=Saccharom... 124 6e-29 sp|Q91372|DDX4_XENLA Probable ATP-dependent RNA helicase DDX4 OS=... 126 6e-29 sp|Q755A5|DBP3_EREGS ATP-dependent RNA helicase DBP3 OS=Eremothec... 125 6e-29 sp|P0A4D8|CSHA_STRR6 DEAD-box ATP-dependent RNA helicase CshA OS=... 124 7e-29 sp|P0A4D7|CSHA_STRPN DEAD-box ATP-dependent RNA helicase CshA OS=... 124 7e-29 sp|Q6FS54|DBP3_CANGA ATP-dependent RNA helicase DBP3 OS=Candida g... 124 7e-29 sp|A6ZUA1|DBP3_YEAS7 ATP-dependent RNA helicase DBP3 OS=Saccharom... 124 7e-29 sp|Q0CL13|DBP3_ASPTN ATP-dependent RNA helicase dbp3 OS=Aspergill... 124 8e-29 sp|Q966L9|GLH2_CAEEL ATP-dependent RNA helicase glh-2 OS=Caenorha... 126 9e-29 sp|P25888|RHLE_ECOLI ATP-dependent RNA helicase RhlE OS=Escherich... 123 9e-29 sp|Q6CT49|PRP28_KLULA Pre-mRNA-splicing ATP-dependent RNA helicas... 124 9e-29 sp|P42305|DBPA_BACSU ATP-dependent RNA helicase DbpA OS=Bacillus ... 123 1e-28 sp|Q9P7C7|PRP11_SCHPO Pre-mRNA-processing ATP-dependent RNA helic... 126 1e-28 sp|P34689|GLH1_CAEEL ATP-dependent RNA helicase glh-1 OS=Caenorha... 126 1e-28 sp|Q54QS3|DDX3_DICDI Probable ATP-dependent RNA helicase ddx3 OS=... 125 1e-28 sp|Q6C799|DBP8_YARLI ATP-dependent RNA helicase DBP8 OS=Yarrowia ... 122 1e-28 sp|Q65N62|CSHA_BACLD DEAD-box ATP-dependent RNA helicase CshA OS=... 123 2e-28 sp|Q8Y8N0|CSHA_LISMO ATP-dependent RNA helicase CshA OS=Listeria ... 123 2e-28 sp|A3LRW2|DBP3_PICST ATP-dependent RNA helicase DBP3 OS=Scheffers... 123 2e-28 sp|Q9ZRZ8|RH28_ARATH DEAD-box ATP-dependent RNA helicase 28 OS=Ar... 125 2e-28 sp|Q84UQ1|RH42_ORYSJ DEAD-box ATP-dependent RNA helicase 42 OS=Or... 125 2e-28 sp|Q6BZ77|DBP3_DEBHA ATP-dependent RNA helicase DBP3 OS=Debaryomy... 123 2e-28 sp|Q6CT46|DBP3_KLULA ATP-dependent RNA helicase DBP3 OS=Kluyverom... 122 3e-28 sp|P0CQ76|DBP2_CRYNJ ATP-dependent RNA helicase DBP2-A OS=Cryptoc... 122 4e-28 sp|P0CQ77|DBP2_CRYNB ATP-dependent RNA helicase DBP2-A OS=Cryptoc... 122 4e-28 sp|Q4IF76|DBP2_GIBZE ATP-dependent RNA helicase DBP2 OS=Gibberell... 122 4e-28 sp|Q9NXZ2|DDX43_HUMAN Probable ATP-dependent RNA helicase DDX43 O... 123 4e-28 sp|P46942|DB10_NICSY ATP-dependent RNA helicase-like protein DB10... 123 4e-28 sp|A6SCT6|DBP3_BOTFB ATP-dependent RNA helicase dbp3 OS=Botryotin... 123 4e-28 sp|A2QFL3|DBP3_ASPNC ATP-dependent RNA helicase dbp3 OS=Aspergill... 122 4e-28 sp|Q8Y7M8|DBPA_LISMO ATP-dependent RNA helicase DbpA OS=Listeria ... 121 6e-28 sp|Q9HGM5|DBP8_SCHPO ATP-dependent RNA helicase dbp8 OS=Schizosac... 121 6e-28 sp|Q4WH83|DBP3_ASPFU ATP-dependent RNA helicase dbp3 OS=Aspergill... 121 6e-28 sp|Q10202|DBP3_SCHPO ATP-dependent RNA helicase dbp3 OS=Schizosac... 121 9e-28 sp|P0CQ98|PRP5_CRYNJ Pre-mRNA-processing ATP-dependent RNA helica... 123 1e-27 sp|P0CQ99|PRP5_CRYNB Pre-mRNA-processing ATP-dependent RNA helica... 123 1e-27 sp|Q5N7W4|RH30_ORYSJ DEAD-box ATP-dependent RNA helicase 30 OS=Or... 122 1e-27 sp|A6SFV4|DBP8_BOTFB ATP-dependent RNA helicase dbp8 OS=Botryotin... 121 2e-27 sp|A7EYW0|DBP3_SCLS1 ATP-dependent RNA helicase dbp3 OS=Sclerotin... 121 2e-27 sp|Q7A0D2|CSHA_STAAW DEAD-box ATP-dependent RNA helicase CshA OS=... 120 2e-27 sp|Q6G7M9|CSHA_STAAS DEAD-box ATP-dependent RNA helicase CshA OS=... 120 2e-27 sp|Q6GEZ3|CSHA_STAAR DEAD-box ATP-dependent RNA helicase CshA OS=... 120 2e-27 sp|Q7A4G0|CSHA_STAAN DEAD-box ATP-dependent RNA helicase CshA OS=... 120 2e-27 sp|Q99SH6|CSHA_STAAM DEAD-box ATP-dependent RNA helicase CshA OS=... 120 2e-27 sp|Q5HEB9|CSHA_STAAC DEAD-box ATP-dependent RNA helicase CshA OS=... 120 2e-27 sp|Q2YUH3|CSHA_STAAB DEAD-box ATP-dependent RNA helicase CshA OS=... 120 2e-27 sp|Q2FWH5|CSHA_STAA8 DEAD-box ATP-dependent RNA helicase CshA OS=... 120 2e-27 sp|Q2FF45|CSHA_STAA3 DEAD-box ATP-dependent RNA helicase CshA OS=... 120 2e-27 sp|A1C5V3|DBP3_ASPCL ATP-dependent RNA helicase dbp3 OS=Aspergill... 120 2e-27 sp|Q4I662|DBP8_GIBZE ATP-dependent RNA helicase DBP8 OS=Gibberell... 120 3e-27 sp|Q0INC5|RH28_ORYSJ DEAD-box ATP-dependent RNA helicase 28 OS=Or... 121 3e-27 sp|Q0U8V9|DBP8_PHANO ATP-dependent RNA helicase DBP8 OS=Phaeospha... 119 3e-27 sp|Q9SQV1|RH40_ARATH DEAD-box ATP-dependent RNA helicase 40 OS=Ar... 121 3e-27 sp|A7E436|DBP8_SCLS1 ATP-dependent RNA helicase dbp8 OS=Sclerotin... 119 3e-27 sp|A1DG51|DBP3_NEOFI ATP-dependent RNA helicase dbp3 OS=Neosartor... 119 4e-27 sp|Q49Z29|CSHA_STAS1 DEAD-box ATP-dependent RNA helicase CshA OS=... 119 5e-27 sp|Q2UMH8|DBP3_ASPOR ATP-dependent RNA helicase dbp3 OS=Aspergill... 118 6e-27 sp|Q8L4E9|RH36_ORYSJ DEAD-box ATP-dependent RNA helicase 36 OS=Or... 118 7e-27 sp|Q59W52|PRP28_CANAL Pre-mRNA-splicing ATP-dependent RNA helicas... 119 9e-27 sp|P0CQ92|DRS1_CRYNJ ATP-dependent RNA helicase DRS1 OS=Cryptococ... 119 1e-26 sp|Q5HK76|HSDR_STAEQ Type I restriction enzyme SepRPIP endonuclea... 120 1e-26 sp|A1D6X9|DBP8_NEOFI ATP-dependent RNA helicase dbp8 OS=Neosartor... 118 1e-26 sp|P0CQ93|DRS1_CRYNB ATP-dependent RNA helicase DRS1 OS=Cryptococ... 119 1e-26 sp|Q887N8|RHLB_PSESM ATP-dependent RNA helicase RhlB OS=Pseudomon... 116 1e-26 sp|Q88NB7|RHLB_PSEPK ATP-dependent RNA helicase RhlB OS=Pseudomon... 116 1e-26 sp|A5DU73|PRP28_LODEL Pre-mRNA-splicing ATP-dependent RNA helicas... 118 1e-26 sp|Q4JG17|VASAL_PENVA Probable ATP-dependent RNA helicase vasa-li... 119 1e-26 sp|A5DF03|PRP28_PICGU Pre-mRNA-splicing ATP-dependent RNA helicas... 118 1e-26 sp|Q2GUI4|DBP3_CHAGB ATP-dependent RNA helicase DBP3 OS=Chaetomiu... 118 1e-26 sp|Q4L7W0|CSHA_STAHJ DEAD-box ATP-dependent RNA helicase CshA OS=... 117 1e-26 sp|Q9HXE5|RHLB_PSEAE ATP-dependent RNA helicase RhlB OS=Pseudomon... 115 2e-26 sp|Q02S21|RHLB_PSEAB ATP-dependent RNA helicase RhlB OS=Pseudomon... 115 2e-26 sp|B7UUT0|RHLB_PSEA8 ATP-dependent RNA helicase RhlB OS=Pseudomon... 115 2e-26 sp|Q1DMX8|PRP28_COCIM Pre-mRNA-splicing ATP-dependent RNA helicas... 118 2e-26 sp|Q9Y6V7|DDX49_HUMAN Probable ATP-dependent RNA helicase DDX49 O... 116 2e-26 sp|P21693|DBPA_ECOLI ATP-dependent RNA helicase DbpA OS=Escherich... 116 2e-26 sp|Q81DF9|CSHE_BACCR DEAD-box ATP-dependent RNA helicase CshE OS=... 116 2e-26 sp|Q6BLU9|PRP28_DEBHA Pre-mRNA-splicing ATP-dependent RNA helicas... 117 3e-26 sp|O02494|IF4A_CRYPV Eukaryotic initiation factor 4A OS=Cryptospo... 114 4e-26 sp|Q4PEX7|DBP8_USTMA ATP-dependent RNA helicase DBP8 OS=Ustilago ... 116 4e-26 sp|A5DKW3|DRS1_PICGU ATP-dependent RNA helicase DRS1 OS=Meyerozym... 117 5e-26 sp|Q5HME0|CSHA_STAEQ DEAD-box ATP-dependent RNA helicase CshA OS=... 116 5e-26 sp|Q5RC67|DDX23_PONAB Probable ATP-dependent RNA helicase DDX23 O... 117 5e-26 sp|Q9BUQ8|DDX23_HUMAN Probable ATP-dependent RNA helicase DDX23 O... 117 5e-26 sp|P93008|RH21_ARATH DEAD-box ATP-dependent RNA helicase 21 OS=Ar... 117 5e-26 sp|P0CQ88|PRP28_CRYNJ Pre-mRNA-splicing ATP-dependent RNA helicas... 117 7e-26 sp|P0CQ89|PRP28_CRYNB Pre-mRNA-splicing ATP-dependent RNA helicas... 117 7e-26 sp|P27639|IF4A_CAEEL Eukaryotic initiation factor 4A OS=Caenorhab... 114 7e-26 sp|Q4WEB4|FAL1_ASPFU ATP-dependent RNA helicase fal1 OS=Aspergill... 114 7e-26 sp|Q54KG1|DDX41_DICDI Probable ATP-dependent RNA helicase ddx41 O... 116 8e-26 sp|Q53RK8|RH21_ORYSJ DEAD-box ATP-dependent RNA helicase 21 OS=Or... 116 9e-26 sp|Q8SR63|RRP3_ENCCU ATP-dependent rRNA helicase RRP3 OS=Encephal... 113 9e-26 sp|Q8CRP6|CSHA_STAES DEAD-box ATP-dependent RNA helicase CshA OS=... 115 9e-26 sp|Q2UAK1|FAL1_ASPOR ATP-dependent RNA helicase fal1 OS=Aspergill... 113 1e-25 sp|Q5B3H7|DBP8_EMENI ATP-dependent RNA helicase dbp8 OS=Emericell... 115 1e-25 sp|Q9Z6C9|CSHA_LIMRT ATP-dependent RNA helicase CshA OS=Limosilac... 114 1e-25 sp|Q5AUL4|FAL1_EMENI ATP-dependent RNA helicase fal1 OS=Emericell... 113 1e-25 sp|Q58083|H669_METJA Probable ATP-dependent RNA helicase MJ0669 O... 112 1e-25 sp|Q1DTB3|FAL1_COCIM ATP-dependent RNA helicase FAL1 OS=Coccidioi... 113 1e-25 sp|Q0CAS8|FAL1_ASPTN ATP-dependent RNA helicase fal1 OS=Aspergill... 113 1e-25 sp|A5AAE5|FAL1_ASPNC ATP-dependent RNA helicase fal1 OS=Aspergill... 113 1e-25 sp|A1C595|FAL1_ASPCL ATP-dependent RNA helicase fal1 OS=Aspergill... 113 1e-25 sp|A1CKJ0|DBP8_ASPCL ATP-dependent RNA helicase dbp8 OS=Aspergill... 114 1e-25 sp|Q2GWJ5|FAL1_CHAGB ATP-dependent RNA helicase FAL1 OS=Chaetomiu... 112 1e-25 sp|Q5U526|I4A3A_XENLA Eukaryotic initiation factor 4A-III-A OS=Xe... 113 1e-25 sp|A1D071|FAL1_NEOFI ATP-dependent RNA helicase fal1 OS=Neosartor... 112 1e-25 sp|Q91VC3|IF4A3_MOUSE Eukaryotic initiation factor 4A-III OS=Mus ... 112 2e-25 sp|A6QSQ0|FAL1_AJECN ATP-dependent RNA helicase FAL1 OS=Ajellomyc... 113 2e-25 sp|Q3B8Q2|IF4A3_RAT Eukaryotic initiation factor 4A-III OS=Rattus... 112 2e-25 sp|A6M931|IF4A3_PIG Eukaryotic initiation factor 4A-III OS=Sus sc... 112 2e-25 sp|Q2NL22|IF4A3_BOVIN Eukaryotic initiation factor 4A-III OS=Bos ... 112 2e-25 sp|Q6CX73|FAL1_KLULA ATP-dependent RNA helicase FAL1 OS=Kluyverom... 112 2e-25 sp|Q4R3Q1|IF4A3_MACFA Eukaryotic initiation factor 4A-III OS=Maca... 112 2e-25 sp|P38919|IF4A3_HUMAN Eukaryotic initiation factor 4A-III OS=Homo... 112 2e-25 sp|B7ZTW1|IF4A3_XENTR Eukaryotic initiation factor 4A-III OS=Xeno... 112 2e-25 sp|Q99MJ9|DDX50_MOUSE ATP-dependent RNA helicase DDX50 OS=Mus mus... 115 2e-25 sp|B5DG42|IF4A3_SALSA Eukaryotic initiation factor 4A-III OS=Salm... 112 2e-25 sp|A7EM88|FAL1_SCLS1 ATP-dependent RNA helicase fal1 OS=Sclerotin... 112 3e-25 sp|Q6FW42|DRS1_CANGA ATP-dependent RNA helicase DRS1 OS=Candida g... 115 3e-25 sp|O42226|I4A3B_XENLA Eukaryotic initiation factor 4A-III-B OS=Xe... 112 3e-25 sp|Q55BR9|DDX49_DICDI Probable ATP-dependent RNA helicase ddx49 O... 113 3e-25 sp|B5FZY7|IF4A3_TAEGU Eukaryotic initiation factor 4A-III OS=Taen... 112 3e-25 sp|Q5BCU6|PRP28_EMENI Pre-mRNA-splicing ATP-dependent RNA helicas... 115 3e-25 sp|Q5ZM36|IF4A3_CHICK Eukaryotic initiation factor 4A-III OS=Gall... 112 3e-25 sp|Q9P735|FAL1_NEUCR ATP-dependent RNA helicase fal-1 OS=Neurospo... 112 3e-25 sp|A4QU31|FAL1_PYRO7 ATP-dependent RNA helicase FAL1 OS=Pyricular... 112 3e-25 sp|Q1E0Z3|DBP8_COCIM ATP-dependent RNA helicase DBP8 OS=Coccidioi... 113 3e-25 sp|Q4P184|FAL1_USTMA ATP-dependent RNA helicase FAL1 OS=Ustilago ... 111 3e-25 sp|Q9BQ39|DDX50_HUMAN ATP-dependent RNA helicase DDX50 OS=Homo sa... 114 3e-25 sp|Q2UKX3|DBP8_ASPOR ATP-dependent RNA helicase dbp8 OS=Aspergill... 112 4e-25 sp|Q4WPE9|PRP28_ASPFU Pre-mRNA-splicing ATP-dependent RNA helicas... 114 4e-25 sp|Q0UAT0|FAL1_PHANO ATP-dependent RNA helicase FAL1 OS=Phaeospha... 111 4e-25 sp|A5DS77|DBP2_LODEL ATP-dependent RNA helicase DBP2 OS=Lodderomy... 113 4e-25 sp|A3LNL1|PRP28_PICST Pre-mRNA-splicing ATP-dependent RNA helicas... 112 4e-25 sp|O01836|GLH3_CAEEL ATP-dependent RNA helicase glh-3 OS=Caenorha... 114 5e-25 sp|Q4WXW1|DBP8_ASPFU ATP-dependent RNA helicase dbp8 OS=Aspergill... 113 5e-25 sp|Q4IAA0|FAL1_GIBZE ATP-dependent RNA helicase FAL1 OS=Gibberell... 111 5e-25 sp|A1CX72|PRP28_NEOFI Pre-mRNA-splicing ATP-dependent RNA helicas... 114 5e-25 sp|Q86XP3|DDX42_HUMAN ATP-dependent RNA helicase DDX42 OS=Homo sa... 114 5e-25 sp|Q6CEB8|DRS1_YARLI ATP-dependent RNA helicase DRS1 OS=Yarrowia ... 114 5e-25 sp|A7EGG4|PRP28_SCLS1 Pre-mRNA-splicing ATP-dependent RNA helicas... 114 5e-25 sp|Q810A7|DDX42_MOUSE ATP-dependent RNA helicase DDX42 OS=Mus mus... 114 6e-25 sp|Q94A52|RH2_ARATH Eukaryotic initiation factor 4A-III homolog O... 111 7e-25 sp|P41381|IF4A8_TOBAC Eukaryotic initiation factor 4A-8 OS=Nicoti... 111 7e-25 sp|Q5ACK7|DRS1_CANAL ATP-dependent RNA helicase DRS1 OS=Candida a... 113 7e-25 sp|Q40469|IF4A6_TOBAC Eukaryotic initiation factor 4A-6 (Fragment... 107 8e-25 sp|Q26696|DDX17_TRYBB Putative DEAD-box RNA helicase HEL64 OS=Try... 112 8e-25 sp|Q0V1Z7|DRS1_PHANO ATP-dependent RNA helicase DRS1 OS=Phaeospha... 113 8e-25 sp|Q4FZF3|DDX49_MOUSE Probable ATP-dependent RNA helicase DDX49 O... 112 8e-25 sp|Q10055|FAL1_SCHPO ATP-dependent RNA helicase fal1 OS=Schizosac... 110 9e-25 sp|A4R8G3|DBP8_PYRO7 ATP-dependent RNA helicase DBP8 OS=Pyricular... 112 1e-24 sp|A6S4N4|FAL1_BOTFB ATP-dependent RNA helicase fal1 OS=Botryotin... 110 1e-24 sp|Q7SEL0|PRP28_NEUCR Pre-mRNA-splicing ATP-dependent RNA helicas... 113 1e-24 sp|Q10I26|IF43B_ORYSJ Eukaryotic initiation factor 4A-III homolog... 110 1e-24 sp|Q5VNM3|IF43A_ORYSJ Eukaryotic initiation factor 4A-III homolog... 110 1e-24 sp|P41380|IF4A3_NICPL Eukaryotic initiation factor 4A-3 OS=Nicoti... 110 1e-24 sp|P41382|IF410_TOBAC Eukaryotic initiation factor 4A-10 OS=Nicot... 110 1e-24 sp|Q91VN6|DDX41_MOUSE Probable ATP-dependent RNA helicase DDX41 O... 112 1e-24 sp|Q40467|IF414_TOBAC Eukaryotic initiation factor 4A-14 OS=Nicot... 110 1e-24 sp|Q2UH00|PRP28_ASPOR Pre-mRNA-splicing ATP-dependent RNA helicas... 113 1e-24 sp|Q9UJV9|DDX41_HUMAN Probable ATP-dependent RNA helicase DDX41 O... 112 1e-24 sp|Q0CLX0|PRP28_ASPTN Pre-mRNA-splicing ATP-dependent RNA helicas... 113 1e-24 sp|P32892|DRS1_YEAST ATP-dependent RNA helicase DRS1 OS=Saccharom... 113 1e-24 sp|A7A0P8|DRS1_YEAS7 ATP-dependent RNA helicase DRS1 OS=Saccharom... 113 1e-24 sp|Q5R7D1|DDX42_PONAB ATP-dependent RNA helicase DDX42 OS=Pongo a... 113 1e-24 sp|Q9NR30|DDX21_HUMAN Nucleolar RNA helicase 2 OS=Homo sapiens OX... 112 1e-24 sp|Q40468|IF415_TOBAC Eukaryotic initiation factor 4A-15 OS=Nicot... 110 1e-24 sp|A6RJA2|PRP28_BOTFB Pre-mRNA-splicing ATP-dependent RNA helicas... 113 1e-24 sp|P41379|IF4A2_NICPL Eukaryotic initiation factor 4A-2 OS=Nicoti... 110 2e-24 sp|Q9JIK5|DDX21_MOUSE Nucleolar RNA helicase 2 OS=Mus musculus OX... 112 2e-24 sp|Q7ZY47|DDX42_XENLA ATP-dependent RNA helicase DDX42 OS=Xenopus... 112 2e-24 sp|A5AA68|DBP8_ASPNC ATP-dependent RNA helicase dbp8 OS=Aspergill... 111 2e-24 sp|Q4P9P3|DRS1_USTMA ATP-dependent RNA helicase DRS1 OS=Ustilago ... 112 2e-24 sp|Q7ZVA6|IF4A3_DANRE Eukaryotic initiation factor 4A-III OS=Dani... 109 2e-24 sp|A4QYM6|DRS1_PYRO7 ATP-dependent RNA helicase DRS1 OS=Pyricular... 112 2e-24 sp|A3LQW7|DBP2_PICST ATP-dependent RNA helicase DBP2 OS=Scheffers... 111 2e-24 sp|A2QIL2|PRP28_ASPNC Pre-mRNA-splicing ATP-dependent RNA helicas... 112 2e-24 sp|P54509|YQHH_BACSU Uncharacterized ATP-dependent helicase YqhH ... 111 2e-24 sp|Q3B8Q1|DDX21_RAT Nucleolar RNA helicase 2 OS=Rattus norvegicus... 112 2e-24 sp|Q40471|IF4A9_TOBAC Eukaryotic initiation factor 4A-9 OS=Nicoti... 109 2e-24 sp|Q7FGZ2|RH1_ARATH DEAD-box ATP-dependent RNA helicase 1 OS=Arab... 111 3e-24 sp|Q40470|IF4A7_TOBAC Eukaryotic initiation factor 4A-7 OS=Nicoti... 109 3e-24 sp|Q55D61|IF4A_DICDI Eukaryotic initiation factor 4A OS=Dictyoste... 109 3e-24 sp|Q9VHS8|IF4A3_DROME Eukaryotic initiation factor 4A-III OS=Dros... 109 3e-24 sp|P0C2N8|DRS1_NEUCR ATP-dependent RNA helicase drs1 OS=Neurospor... 112 3e-24 sp|Q9LU46|RH35_ARATH DEAD-box ATP-dependent RNA helicase 35 OS=Ar... 111 3e-24 sp|Q650T9|RH7_ORYSJ DEAD-box ATP-dependent RNA helicase 7 OS=Oryz... 111 4e-24 sp|Q5F485|DDX42_CHICK ATP-dependent RNA helicase DDX42 OS=Gallus ... 112 4e-24 sp|Q75F95|DRS1_EREGS ATP-dependent RNA helicase DRS1 OS=Eremothec... 111 5e-24 sp|Q4PDT1|DBP3_USTMA ATP-dependent RNA helicase DBP3 OS=Ustilago ... 110 5e-24 sp|Q6C347|FAL1_YARLI ATP-dependent RNA helicase FAL1 OS=Yarrowia ... 108 5e-24 sp|A7TJM9|DRS1_VANPO ATP-dependent RNA helicase DRS1 OS=Vanderwal... 111 5e-24 sp|Q6CJV1|DRS1_KLULA ATP-dependent RNA helicase DRS1 OS=Kluyverom... 111 5e-24 sp|Q9CAI7|IF4A3_ARATH Eukaryotic initiation factor 4A-3 OS=Arabid... 108 5e-24 sp|Q6BTL5|DRS1_DEBHA ATP-dependent RNA helicase DRS1 OS=Debaryomy... 111 5e-24 sp|A1CHL3|PRP28_ASPCL Pre-mRNA-splicing ATP-dependent RNA helicas... 111 6e-24 sp|Q921N6|DDX27_MOUSE Probable ATP-dependent RNA helicase DDX27 O... 111 6e-24 sp|A5E6W6|RRP3_LODEL ATP-dependent rRNA helicase RRP3 OS=Lodderom... 109 6e-24 sp|P35683|IF4A1_ORYSJ Eukaryotic initiation factor 4A-1 OS=Oryza ... 108 6e-24 sp|Q9SZB4|RH43_ARATH Putative DEAD-box ATP-dependent RNA helicase... 109 7e-24 sp|P41376|IF4A1_ARATH Eukaryotic initiation factor 4A-1 OS=Arabid... 108 7e-24 sp|Q6CJU1|DBP5_KLULA ATP-dependent RNA helicase DBP5 OS=Kluyverom... 109 8e-24 sp|Q6Z2Z4|IF4A3_ORYSJ Eukaryotic initiation factor 4A-3 OS=Oryza ... 107 8e-24 sp|A5DDF4|PRP5_PICGU Pre-mRNA-processing ATP-dependent RNA helica... 110 1e-23 sp|Q41741|IF4A_MAIZE Eukaryotic initiation factor 4A OS=Zea mays ... 107 1e-23 sp|A3LQ55|PRP5_PICST Pre-mRNA-processing ATP-dependent RNA helica... 110 1e-23 sp|Q07886|DDX49_DROME Probable ATP-dependent RNA helicase Dbp45A ... 109 1e-23 sp|Q2HEB0|PRP28_CHAGB Pre-mRNA-splicing ATP-dependent RNA helicas... 109 1e-23 sp|A7TEF4|FAL1_VANPO ATP-dependent RNA helicase FAL1 OS=Vanderwal... 107 1e-23 sp|P41377|IF4A2_ARATH Eukaryotic initiation factor 4A-2 OS=Arabid... 107 1e-23 sp|Q5K5B6|RH57_ORYSJ DEAD-box ATP-dependent RNA helicase 57 OS=Or... 108 1e-23 sp|Q7RYZ7|DBP8_NEUCR ATP-dependent RNA helicase dbp-8 OS=Neurospo... 109 1e-23 sp|Q40465|IF411_TOBAC Eukaryotic initiation factor 4A-11 OS=Nicot... 107 2e-23 sp|A3LSN3|DRS1_PICST ATP-dependent RNA helicase DRS1 OS=Scheffers... 109 2e-23 sp|Q755W0|FAL1_EREGS ATP-dependent RNA helicase FAL1 OS=Eremothec... 106 2e-23 sp|Q8H0U8|RH42_ARATH DEAD-box ATP-dependent RNA helicase 42 OS=Ar... 109 2e-23 sp|P41378|IF4A_WHEAT Eukaryotic initiation factor 4A OS=Triticum ... 106 2e-23 sp|Q4I7F9|PRP28_GIBZE Pre-mRNA-splicing ATP-dependent RNA helicas... 109 2e-23 sp|A5E058|PRP5_LODEL Pre-mRNA-processing ATP-dependent RNA helica... 109 2e-23 sp|Q9FZ92|RH44_ARATH Putative DEAD-box ATP-dependent RNA helicase... 108 3e-23 sp|Q47281|T1RE_ECOLX Type I restriction enzyme EcoEI endonuclease... 108 5e-23 sp|Q553B1|DDX46_DICDI ATP-dependent RNA helicase ddx46 OS=Dictyos... 108 5e-23 sp|Q09747|DBP5_SCHPO ATP-dependent RNA helicase dbp5 OS=Schizosac... 106 5e-23 sp|Q0UWC8|PRP28_PHANO Pre-mRNA-splicing ATP-dependent RNA helicas... 107 5e-23 sp|Q4I830|DRS1_GIBZE ATP-dependent RNA helicase DRS1 OS=Gibberell... 107 6e-23 sp|Q84TG1|RH57_ARATH DEAD-box ATP-dependent RNA helicase 57 OS=Ar... 106 7e-23 sp|Q12099|FAL1_YEAST ATP-dependent RNA helicase FAL1 OS=Saccharom... 104 8e-23 sp|A6ZXY5|FAL1_YEAS7 ATP-dependent RNA helicase FAL1 OS=Saccharom... 104 8e-23 sp|A5DWJ1|FAL1_LODEL ATP-dependent RNA helicase FAL1 OS=Lodderomy... 104 9e-23 sp|P0CR02|DBP8_CRYNJ ATP-dependent RNA helicase DBP8 OS=Cryptococ... 106 1e-22 sp|P0CR03|DBP8_CRYNB ATP-dependent RNA helicase DBP8 OS=Cryptococ... 106 1e-22 sp|Q9Y2R4|DDX52_HUMAN Probable ATP-dependent RNA helicase DDX52 O... 106 1e-22 sp|Q0UCB9|DBP5_PHANO ATP-dependent RNA helicase DBP5 OS=Phaeospha... 105 1e-22 sp|Q0E3X4|RH35A_ORYSJ DEAD-box ATP-dependent RNA helicase 35A OS=... 106 1e-22 sp|Q9C8J1|RH34_ARATH DEAD-box ATP-dependent RNA helicase 34 OS=Ar... 104 1e-22 sp|Q9Y7T7|PRP28_SCHPO Pre-mRNA-splicing ATP-dependent RNA helicas... 106 2e-22 sp|Q0CNX1|DBP8_ASPTN ATP-dependent RNA helicase dbp8 OS=Aspergill... 105 2e-22 sp|Q99PT0|DDX52_RAT Probable ATP-dependent RNA helicase DDX52 OS=... 105 2e-22 sp|Q75BS4|DHH1_EREGS ATP-dependent RNA helicase DHH1 OS=Eremothec... 104 2e-22 sp|Q4P7Z8|DBP5_USTMA ATP-dependent RNA helicase DBP5 OS=Ustilago ... 104 2e-22 sp|A6SBT4|DBP5_BOTFB ATP-dependent RNA helicase dbp5 OS=Botryotin... 104 2e-22 sp|Q2UQI6|DRS1_ASPOR ATP-dependent RNA helicase drs1 OS=Aspergill... 106 2e-22 sp|P0CQ72|FAL1_CRYNJ ATP-dependent RNA helicase FAL1 OS=Cryptococ... 103 2e-22 sp|P0CQ73|FAL1_CRYNB ATP-dependent RNA helicase FAL1 OS=Cryptococ... 103 2e-22 sp|Q41382|RH7_SPIOL DEAD-box ATP-dependent RNA helicase 7 OS=Spin... 105 3e-22 sp|Q93ZG7|RH38_ARATH DEAD-box ATP-dependent RNA helicase 38 OS=Ar... 104 3e-22 sp|A6RUH2|DRS1_BOTFB ATP-dependent RNA helicase drs1 OS=Botryotin... 105 3e-22 sp|Q86TM3|DDX53_HUMAN Probable ATP-dependent RNA helicase DDX53 O... 105 3e-22 sp|A5D7C1|DDX52_BOVIN Probable ATP-dependent RNA helicase DDX52 O... 105 3e-22 sp|Q8K301|DDX52_MOUSE Probable ATP-dependent RNA helicase DDX52 O... 105 3e-22 sp|A7F4L5|DRS1_SCLS1 ATP-dependent RNA helicase drs1 OS=Sclerotin... 105 3e-22 sp|A3GFV3|FAL1_PICST ATP-dependent RNA helicase FAL1 OS=Scheffers... 102 4e-22 sp|Q5ADL0|PRP5_CANAL Pre-mRNA-processing ATP-dependent RNA helica... 105 4e-22 sp|P0CQ86|DBP5_CRYNJ ATP-dependent RNA helicase DBP5 OS=Cryptococ... 104 4e-22 sp|Q0JM17|RH56_ORYSJ DEAD-box ATP-dependent RNA helicase 56 OS=Or... 103 4e-22 sp|P0CQ90|MAK5_CRYNJ ATP-dependent RNA helicase MAK5 OS=Cryptococ... 105 4e-22 sp|Q5Z6G5|RH35B_ORYSJ DEAD-box ATP-dependent RNA helicase 35B OS=... 104 5e-22 sp|Q9GZR7|DDX24_HUMAN ATP-dependent RNA helicase DDX24 OS=Homo sa... 105 5e-22 sp|Q5JK84|RH15_ORYSJ DEAD-box ATP-dependent RNA helicase 15 OS=Or... 102 5e-22 sp|P0CQ87|DBP5_CRYNB ATP-dependent RNA helicase DBP5 OS=Cryptococ... 104 5e-22 sp|A5DE68|FAL1_PICGU ATP-dependent RNA helicase FAL1 OS=Meyerozym... 102 5e-22 sp|Q4WRV2|DRS1_ASPFU ATP-dependent RNA helicase drs1 OS=Aspergill... 104 5e-22 sp|Q6FJG1|FAL1_CANGA ATP-dependent RNA helicase FAL1 OS=Candida g... 102 6e-22 sp|Q59MW2|DBP6_CANAL ATP-dependent RNA helicase DBP6 OS=Candida a... 104 6e-22 sp|Q09775|ROK1_SCHPO ATP-dependent RNA helicase rok1 OS=Schizosac... 103 6e-22 sp|A1D1R8|DRS1_NEOFI ATP-dependent RNA helicase drs1 OS=Neosartor... 104 7e-22 sp|Q9V3C0|DDX41_DROME ATP-dependent RNA helicase abstrakt OS=Dros... 104 7e-22 sp|P0CQ91|MAK5_CRYNB ATP-dependent RNA helicase MAK5 OS=Cryptococ... 104 7e-22 sp|Q6BT27|FAL1_DEBHA ATP-dependent RNA helicase FAL1 OS=Debaryomy... 102 7e-22 sp|Q5RDL2|DDX24_PONAB ATP-dependent RNA helicase DDX24 OS=Pongo a... 104 7e-22 sp|P0CR06|DBP10_CRYNJ ATP-dependent RNA helicase DBP10 OS=Cryptoc... 104 7e-22 sp|P0CR07|DBP10_CRYNB ATP-dependent RNA helicase DBP10 OS=Cryptoc... 104 7e-22 sp|Q6BJX6|DHH1_DEBHA ATP-dependent RNA helicase DHH1 OS=Debaryomy... 103 7e-22 sp|Q1E2B2|DRS1_COCIM ATP-dependent RNA helicase DRS1 OS=Coccidioi... 104 8e-22 sp|Q5AAW3|DHH1_CANAL ATP-dependent RNA helicase DHH1 OS=Candida a... 103 8e-22 sp|Q0CZN5|DRS1_ASPTN ATP-dependent RNA helicase drs1 OS=Aspergill... 104 8e-22 sp|Q54IV3|DDX42_DICDI Probable ATP-dependent RNA helicase ddx42 O... 104 8e-22 sp|Q2HGF7|DBP5_CHAGB ATP-dependent RNA helicase DBP5 OS=Chaetomiu... 102 9e-22 sp|Q10RI7|RH38_ORYSJ DEAD-box ATP-dependent RNA helicase 38 OS=Or... 102 1e-21 sp|O22907|RH24_ARATH DEAD-box ATP-dependent RNA helicase 24 OS=Ar... 103 1e-21 sp|Q2TBP1|DDX25_BOVIN ATP-dependent RNA helicase DDX25 OS=Bos tau... 102 1e-21 sp|A4RIF1|DBP5_PYRO7 ATP-dependent RNA helicase DBP5 OS=Pyricular... 102 1e-21 sp|A1CNV8|DRS1_ASPCL ATP-dependent RNA helicase drs1 OS=Aspergill... 103 1e-21 sp|Q9QY16|DDX25_RAT ATP-dependent RNA helicase DDX25 OS=Rattus no... 102 1e-21 sp|Q2GQ93|DHH1_CHAGB ATP-dependent RNA helicase DHH1 OS=Chaetomiu... 102 1e-21 sp|A7EY76|DBP5_SCLS1 ATP-dependent RNA helicase dbp5 OS=Sclerotin... 102 1e-21 sp|Q6C0X2|DHH1_YARLI ATP-dependent RNA helicase DHH1 OS=Yarrowia ... 102 1e-21 sp|P0CQ80|DHH1_CRYNJ ATP-dependent RNA helicase DHH1 OS=Cryptococ... 103 1e-21 sp|P0CQ81|DHH1_CRYNB ATP-dependent RNA helicase DHH1 OS=Cryptococ... 103 1e-21 sp|Q6CSZ7|DHH1_KLULA ATP-dependent RNA helicase DHH1 OS=Kluyverom... 102 1e-21 sp|A4RMV8|ROK1_PYRO7 ATP-dependent RNA helicase ROK1 OS=Pyricular... 103 2e-21 sp|A6RC50|DBP5_AJECN ATP-dependent RNA helicase DBP5 OS=Ajellomyc... 102 2e-21 sp|Q75C39|DBP5_EREGS ATP-dependent RNA helicase DBP5 OS=Eremothec... 101 2e-21 sp|Q58Z64|DHH1_CRYNH ATP-dependent RNA helicase VAD1 OS=Cryptococ... 102 2e-21 sp|Q8Y755|CSHB_LISMO DEAD-box ATP-dependent RNA helicase CshB OS=... 101 2e-21 sp|Q9QY15|DDX25_MOUSE ATP-dependent RNA helicase DDX25 OS=Mus mus... 101 2e-21 sp|A1CFV3|DBP5_ASPCL ATP-dependent RNA helicase dbp5 OS=Aspergill... 101 2e-21 sp|Q5AVM1|DBP5_EMENI ATP-dependent RNA helicase dbp5 OS=Emericell... 101 3e-21 sp|Q6C7X8|DBP10_YARLI ATP-dependent RNA helicase DBP10 OS=Yarrowi... 102 3e-21 sp|Q9LFN6|RH56_ARATH DEAD-box ATP-dependent RNA helicase 56 OS=Ar... 100 3e-21 sp|Q56XG6|RH15_ARATH DEAD-box ATP-dependent RNA helicase 15 OS=Ar... 100 3e-21 sp|Q4WIN6|DBP5_ASPFU ATP-dependent RNA helicase dbp5 OS=Aspergill... 101 3e-21 sp|A5DZX2|DBP5_LODEL ATP-dependent RNA helicase DBP5 OS=Lodderomy... 101 3e-21 sp|Q5A9Z6|FAL1_CANAL ATP-dependent RNA helicase FAL1 OS=Candida a... 99.9 4e-21 sp|A7TGU7|DHH1_VANPO ATP-dependent RNA helicase DHH1 OS=Vanderwal... 101 4e-21 sp|A3LWX3|DHH1_PICST ATP-dependent RNA helicase DHH1 OS=Scheffers... 101 4e-21 sp|Q4R8K5|IF4A1_MACFA Eukaryotic initiation factor 4A-I OS=Macaca... 99.9 4e-21 sp|P29562|IF4A1_RABIT Eukaryotic initiation factor 4A-I (Fragment... 99.5 5e-21 sp|Q4WCW2|SUB2_ASPFU ATP-dependent RNA helicase sub2 OS=Aspergill... 100 5e-21 sp|A5DIP0|DHH1_PICGU ATP-dependent RNA helicase DHH1 OS=Meyerozym... 101 5e-21 sp|P20449|DBP5_YEAST ATP-dependent RNA helicase DBP5 OS=Saccharom... 100 5e-21 sp|A6ZNQ1|DBP5_YEAS7 ATP-dependent RNA helicase DBP5 OS=Saccharom... 100 5e-21 sp|A2QUY7|DBP5_ASPNC ATP-dependent RNA helicase dbp5 OS=Aspergill... 100 5e-21 sp|P60843|IF4A1_MOUSE Eukaryotic initiation factor 4A-I OS=Mus mu... 99.5 5e-21 sp|P60842|IF4A1_HUMAN Eukaryotic initiation factor 4A-I OS=Homo s... 99.5 5e-21 sp|Q3SZ54|IF4A1_BOVIN Eukaryotic initiation factor 4A-I OS=Bos ta... 99.5 5e-21 sp|Q54TF8|DDX19_DICDI ATP-dependent RNA helicase ddx19 OS=Dictyos... 100 6e-21 sp|A5A6N4|IF4A1_PANTR Eukaryotic initiation factor 4A-I OS=Pan tr... 99.5 6e-21 sp|Q5R5F5|IF4A1_PONAB Eukaryotic initiation factor 4A-I OS=Pongo ... 99.5 6e-21 sp|Q6FKN8|DBP5_CANGA ATP-dependent RNA helicase DBP5 OS=Candida g... 100 7e-21 sp|Q54Y81|DDX23_DICDI ATP-dependent RNA helicase ddx23 OS=Dictyos... 101 7e-21 sp|Q9UHL0|DDX25_HUMAN ATP-dependent RNA helicase DDX25 OS=Homo sa... 99.9 7e-21 sp|Q8RXK6|RH8_ARATH DEAD-box ATP-dependent RNA helicase 8 OS=Arab... 100 7e-21 sp|A1CYG5|DBP5_NEOFI ATP-dependent RNA helicase dbp5 OS=Neosartor... 99.9 8e-21 sp|Q5AJD0|DBP5_CANAL ATP-dependent RNA helicase DBP5 OS=Candida a... 100 8e-21 sp|A4R715|DHH1_PYRO7 ATP-dependent RNA helicase DHH1 OS=Pyricular... 100 8e-21 sp|Q0CBE1|DHH1_ASPTN ATP-dependent RNA helicase dhh1 OS=Aspergill... 99.9 8e-21 sp|Q6BML1|PRP5_DEBHA Pre-mRNA-processing ATP-dependent RNA helica... 101 9e-21 sp|Q1EB85|DBP5_COCIM ATP-dependent RNA helicase DBP5 OS=Coccidioi... 99.9 9e-21 sp|Q10MH8|RH24_ORYSJ DEAD-box ATP-dependent RNA helicase 24 OS=Or... 101 9e-21 sp|A6QUM7|DBP10_AJECN ATP-dependent RNA helicase DBP10 OS=Ajellom... 101 1e-20 sp|Q6C024|PRP28_YARLI Pre-mRNA-splicing ATP-dependent RNA helicas... 100 1e-20 sp|P54475|CSHB_BACSU DEAD-box ATP-dependent RNA helicase CshB OS=... 99.1 1e-20 sp|Q2U5A2|DHH1_ASPOR ATP-dependent RNA helicase dhh1 OS=Aspergill... 99.9 1e-20 sp|Q7S5D9|DHH1_NEUCR ATP-dependent RNA helicase dhh1 OS=Neurospor... 99.9 1e-20 sp|Q0CGJ9|SUB2_ASPTN ATP-dependent RNA helicase sub2 OS=Aspergill... 99.1 1e-20 sp|Q4IPI1|ROK1_GIBZE ATP-dependent RNA helicase ROK1 OS=Gibberell... 100 1e-20 sp|A5DIX5|ROK1_PICGU ATP-dependent RNA helicase ROK1 OS=Meyerozym... 99.9 1e-20 sp|Q6H7S2|RH8_ORYSJ DEAD-box ATP-dependent RNA helicase 8 OS=Oryz... 99.5 1e-20 sp|Q7RZH4|MAK5_NEUCR ATP-dependent RNA helicase mak-5 OS=Neurospo... 100 1e-20 sp|Q09719|DBP10_SCHPO ATP-dependent RNA helicase dbp10 OS=Schizos... 100 1e-20 sp|A4RBS3|SUB2_PYRO7 ATP-dependent RNA helicase SUB2 OS=Pyricular... 98.7 1e-20 sp|P39517|DHH1_YEAST ATP-dependent RNA helicase DHH1 OS=Saccharom... 99.1 1e-20 sp|A6ZXG9|DHH1_YEAS7 ATP-dependent RNA helicase DHH1 OS=Saccharom... 99.1 1e-20 sp|A2QY39|DHH1_ASPNC ATP-dependent RNA helicase dhh1 OS=Aspergill... 99.1 1e-20 sp|Q39189|RH7_ARATH DEAD-box ATP-dependent RNA helicase 7 OS=Arab... 100 1e-20 sp|Q0U6X2|MAK5_PHANO ATP-dependent RNA helicase MAK5 OS=Phaeospha... 100 2e-20 sp|Q55CP6|DDX1_DICDI Probable ATP-dependent RNA helicase ddx1 OS=... 100 2e-20 sp|Q8N8A6|DDX51_HUMAN ATP-dependent RNA helicase DDX51 OS=Homo sa... 99.9 2e-20 sp|Q0U7S9|DHH1_PHANO ATP-dependent RNA helicase DHH1 OS=Phaeospha... 99.1 2e-20 sp|A3LSJ2|DBP6_PICST ATP-dependent RNA helicase DBP6 OS=Scheffers... 99.5 2e-20 sp|Q4R4Y9|IF4A2_MACFA Eukaryotic initiation factor 4A-II OS=Macac... 97.9 2e-20 sp|A1CMQ7|SUB2_ASPCL ATP-dependent RNA helicase sub2 OS=Aspergill... 98.3 2e-20 sp|Q09181|DHH1_SCHPO Putative ATP-dependent RNA helicase ste13 OS... 98.7 2e-20 sp|A6R3R5|IF4A_AJECN ATP-dependent RNA helicase eIF4A OS=Ajellomy... 97.6 2e-20 sp|Q1E5R1|DHH1_COCIM ATP-dependent RNA helicase DHH1 OS=Coccidioi... 98.7 2e-20 sp|P10486|T1R1_ECOLX Type I restriction enzyme EcoR124I/EcoR124II... 100 2e-20 sp|A1DL85|SUB2_NEOFI ATP-dependent RNA helicase sub2 OS=Neosartor... 97.9 2e-20 sp|A6R603|SUB2_AJECN ATP-dependent RNA helicase SUB2 OS=Ajellomyc... 97.9 3e-20 sp|Q6DRI7|DDX51_DANRE ATP-dependent RNA helicase DDX51 OS=Danio r... 99.1 3e-20 sp|Q4P331|IF4A_USTMA ATP-dependent RNA helicase eIF4A OS=Ustilago... 97.6 3e-20 sp|Q4HY71|DBP5_GIBZE ATP-dependent RNA helicase DBP5 OS=Gibberell... 98.3 3e-20 sp|Q2U8K6|DBP5_ASPOR ATP-dependent RNA helicase dbp5 OS=Aspergill... 98.3 3e-20 sp|Q0CDT1|DBP5_ASPTN ATP-dependent RNA helicase dbp5 OS=Aspergill... 98.3 3e-20 sp|Q5VRY0|RH39_ORYSJ DEAD-box ATP-dependent RNA helicase 39 OS=Or... 99.1 3e-20 sp|Q2H4D0|SUB2_CHAGB ATP-dependent RNA helicase SUB2 OS=Chaetomiu... 97.6 3e-20 sp|Q1EB38|DBP10_COCIM ATP-dependent RNA helicase DBP10 OS=Coccidi... 99.5 3e-20 sp|Q6FQU5|DHH1_CANGA ATP-dependent RNA helicase DHH1 OS=Candida g... 97.9 3e-20 sp|A5DBI5|DBP5_PICGU ATP-dependent RNA helicase DBP5 OS=Meyerozym... 97.9 3e-20 sp|Q9Y7C4|ROK1_CANAL ATP-dependent RNA helicase CHR1 OS=Candida a... 98.3 3e-20 sp|Q95YF3|CGH1_CAEEL ATP-dependent RNA helicase cgh-1 OS=Caenorha... 97.2 4e-20 sp|A1CJT5|IF4A_ASPCL ATP-dependent RNA helicase eIF4A OS=Aspergil... 96.8 4e-20 sp|Q6BRE4|DBP5_DEBHA ATP-dependent RNA helicase DBP5 OS=Debaryomy... 97.9 4e-20 sp|Q2UPY3|IF4A_ASPOR ATP-dependent RNA helicase eIF4A OS=Aspergil... 97.2 4e-20 sp|Q0CXD0|IF4A_ASPTN ATP-dependent RNA helicase eIF4A OS=Aspergil... 96.8 4e-20 sp|Q7RV88|IF4A_NEUCR ATP-dependent RNA helicase eIF4A OS=Neurospo... 96.8 4e-20 sp|A4QVP2|IF4A_PYRO7 ATP-dependent RNA helicase eIF4A OS=Pyricula... 96.8 4e-20 sp|Q6C3X7|DBP5_YARLI ATP-dependent RNA helicase DBP5 OS=Yarrowia ... 97.6 4e-20 sp|Q641Y8|DDX1_RAT ATP-dependent RNA helicase DDX1 OS=Rattus norv... 98.7 4e-20 >sp|Q96C10|DHX58_HUMAN ATP-dependent RNA helicase DHX58 OS=Homo sapiens OX=9606 GN=DHX58 PE=1 SV=1 Length=678 Score = 894 bits (2311), Expect = 0.0, Method: Composition-based stats. Identities = 678/678 (100%), Positives = 678/678 (100%), Gaps = 0/678 (0%) Query 1 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV 60 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV Sbjct 1 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV 60 Query 61 TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV Sbjct 61 TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 Query 121 ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG 180 ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG Sbjct 121 ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG 180 Query 181 AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI 240 AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI Sbjct 181 AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI 240 Query 241 HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV 300 HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV Sbjct 241 HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV 300 Query 301 DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQR 360 DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQR Sbjct 301 DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQR 360 Query 361 QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ 420 QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ Sbjct 361 QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ 420 Query 421 QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYA 480 QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYA Sbjct 421 QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYA 480 Query 481 FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR 540 FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR Sbjct 481 FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR 540 Query 541 ENQRQQFPVEHVQLLCINCMVAVGHGSDLRKVEGTHHVNVNPNFSNYYNVSRDPVVINKV 600 ENQRQQFPVEHVQLLCINCMVAVGHGSDLRKVEGTHHVNVNPNFSNYYNVSRDPVVINKV Sbjct 541 ENQRQQFPVEHVQLLCINCMVAVGHGSDLRKVEGTHHVNVNPNFSNYYNVSRDPVVINKV 600 Query 601 FKDWKPGGVISCRNCGEVWGLQMIYKSVKLPVLKVRSMLLETPQGRIQAKKWSRVPFSVP 660 FKDWKPGGVISCRNCGEVWGLQMIYKSVKLPVLKVRSMLLETPQGRIQAKKWSRVPFSVP Sbjct 601 FKDWKPGGVISCRNCGEVWGLQMIYKSVKLPVLKVRSMLLETPQGRIQAKKWSRVPFSVP 660 Query 661 DFDFLQHCAENLSDLSLD 678 DFDFLQHCAENLSDLSLD Sbjct 661 DFDFLQHCAENLSDLSLD 678 >sp|Q99J87|DHX58_MOUSE ATP-dependent RNA helicase DHX58 OS=Mus musculus OX=10090 GN=Dhx58 PE=1 SV=2 Length=678 Score = 832 bits (2149), Expect = 0.0, Method: Composition-based stats. Identities = 533/678 (79%), Positives = 593/678 (87%), Gaps = 0/678 (0%) Query 1 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV 60 MELR YQWEVI+PALEGKNIIIWLPTGAGKTRAAA+VAKRHLETVD KVVVLVNRVHLV Sbjct 1 MELRPYQWEVILPALEGKNIIIWLPTGAGKTRAAAFVAKRHLETVDRGKVVVLVNRVHLV 60 Query 61 TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 +QH EEFRRMLD WTVTTLSGDMG RAGFG +AR HDLLICTAELLQ+AL S EE+EHV Sbjct 61 SQHAEEFRRMLDKHWTVTTLSGDMGSRAGFGLMARSHDLLICTAELLQLALNSSEEDEHV 120 Query 121 ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG 180 EL FSLIVVDECHHTHKDTVYN I+S+YLE KL++A+PLPQVLGLTASPGTGGA+KL G Sbjct 121 ELREFSLIVVDECHHTHKDTVYNTILSRYLEQKLKKAEPLPQVLGLTASPGTGGATKLQG 180 Query 181 AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI 240 AI+H+LQLCANLDT IMSP+NC QL H+ +PCKQY+LC RR+QDPFGDL+KKLM+QI Sbjct 181 AIDHILQLCANLDTCHIMSPKNCYSQLLMHNPKPCKQYDLCQRRAQDPFGDLIKKLMNQI 240 Query 241 HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV 300 H LEMP+L ++FGTQMYEQQVV+L + AA AGLQEQRVYALHLRRYNDAL IHDTVRA Sbjct 241 HQQLEMPDLKQQFGTQMYEQQVVQLCKDAAEAGLQEQRVYALHLRRYNDALFIHDTVRAR 300 Query 301 DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQR 360 DAL LQDFY RE TKTQ++ AE LL LFDD KN L LA GPENPKLEMLE+IL + Sbjct 301 DALDMLQDFYDRERTTKTQMVRAESWLLKLFDDHKNVLGQLAARGPENPKLEMLERILLK 360 Query 361 QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ 420 QF S RGIIFTRTRQ+A SLLLWL+QQ LQTV I+ Q+LIGAGN+SQSTHMTQ+DQ Sbjct 361 QFGSPGHTRGIIFTRTRQTASSLLLWLRQQPCLQTVGIKPQMLIGAGNTSQSTHMTQKDQ 420 Query 421 QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYA 480 QEVIQ+F+DG L+LLVATSVAEEGLDI CNVVVRYGLLTNEISMVQARGRARA QSVY+ Sbjct 421 QEVIQEFRDGILSLLVATSVAEEGLDIAQCNVVVRYGLLTNEISMVQARGRARAGQSVYS 480 Query 481 FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR 540 F+ATEGSRE+KREL NEALE LME+AVAAVQKMD E++AKIRDLQQA+L KRAA+AA R Sbjct 481 FLATEGSREMKRELTNEALEVLMEKAVAAVQKMDPDEFKAKIRDLQQASLVKRAARAAHR 540 Query 541 ENQRQQFPVEHVQLLCINCMVAVGHGSDLRKVEGTHHVNVNPNFSNYYNVSRDPVVINKV 600 E Q+ QF EHVQLLCINCMVAVG+GSDLRKVEGTHHVNVNPNFS YY S++PVVINKV Sbjct 541 EIQQGQFLPEHVQLLCINCMVAVGYGSDLRKVEGTHHVNVNPNFSVYYTTSQNPVVINKV 600 Query 601 FKDWKPGGVISCRNCGEVWGLQMIYKSVKLPVLKVRSMLLETPQGRIQAKKWSRVPFSVP 660 FKDW+PGG I C NCGEVWG QMIYKSV LPVLK+ S+LLETP+G+IQAKKWSRVPFS+P Sbjct 601 FKDWRPGGTIRCSNCGEVWGFQMIYKSVTLPVLKIGSILLETPRGKIQAKKWSRVPFSIP 660 Query 661 DFDFLQHCAENLSDLSLD 678 FD LQ C ++LS+LSLD Sbjct 661 VFDILQDCTQSLSELSLD 678 >sp|Q9BYX4|IFIH1_HUMAN Interferon-induced helicase C domain-containing protein 1 OS=Homo sapiens OX=9606 GN=IFIH1 PE=1 SV=3 Length=1025 Score = 659 bits (1700), Expect = 0.0, Method: Composition-based stats. Identities = 291/717 (41%), Positives = 425/717 (59%), Gaps = 52/717 (7%) Query 1 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG----AKVVVLVNR 56 ++LR YQ EV PALEGKNIII LPTG+GKTR A Y+AK HL+ KV+VLVN+ Sbjct 306 LQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNK 365 Query 57 VHLVTQ-HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE 115 V LV Q +EF+ L + V LSGD + F + + D++I TA++L+ +L + E Sbjct 366 VLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLE 425 Query 116 --EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQ---------PLPQVL 164 E+ V+L+ FSLI++DECHHT+K+ VYN IM YL KL+ + PLPQ+L Sbjct 426 NGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQIL 485 Query 165 GLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRR 224 GLTASPG GGA+K A H+L+LCANLD + I + + QL+ Q+PCK++ + Sbjct 486 GLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIADAT 545 Query 225 SQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHL 284 +DPF + L ++M +I + +M +S FGTQ YEQ +++ + AA G +++RV A HL Sbjct 546 REDPFKEKLLEIMTRIQTYCQMSPMS-DFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHL 604 Query 285 RRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQIL----------------------- 321 R+YN+AL I+DT+R +DA L+ FY+ E K ++ Sbjct 605 RKYNEALQINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDSDEGGDDEYCDGDEDEDDLK 664 Query 322 ------CAERRLLALFDDRKNELAHLATHG-PENPKLEMLEKILQRQF-SSSNSPRGIIF 373 +R L+ LF + L LA + EN KL L + Q+ + S RGIIF Sbjct 665 KPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARGIIF 724 Query 374 TRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN 433 T+TRQSA++L W+ + + V ++A LIGAG+SS+ MTQ +Q+EVI KF+ G +N Sbjct 725 TKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKIN 784 Query 434 LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFVATEGSRELKRE 493 LL+AT+VAEEGLDI CN+V+RYGL+TNEI+MVQARGRARAD+S Y VA GS ++ E Sbjct 785 LLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADESTYVLVAHSGSGVIEHE 844 Query 494 LINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQ 553 +N+ E +M +A+ VQ M EY KI +LQ ++ ++ + + + + + Sbjct 845 TVNDFREKMMYKAIHCVQNMKPEEYAHKILELQMQSIMEKKMKTKRNIAKHYKNNPSLIT 904 Query 554 LLCINCMVAVGHGSDLRKVEGTHHVNVNPNFSNYYNVSRDPVVINKVFKDWKPGGVISCR 613 LC NC V G D+ +E HHVN+ P F Y + R+ + K D++ G I C+ Sbjct 905 FLCKNCSVLACSGEDIHVIEKMHHVNMTPEFKELY-IVRENKALQKKCADYQINGEIICK 963 Query 614 NCGEVWGLQMIYKSVKLPVLKVRSMLL--ETPQGRIQAKKWSRVPFSVPDFDFLQHC 668 CG+ WG M++K + LP LK+R+ ++ + + Q KKW +P + P+ D+ + C Sbjct 964 -CGQAWGTMMVHKGLDLPCLKIRNFVVVFKNNSTKKQYKKWVELPITFPNLDYSECC 1019 >sp|Q8R5F7|IFIH1_MOUSE Interferon-induced helicase C domain-containing protein 1 OS=Mus musculus OX=10090 GN=Ifih1 PE=1 SV=1 Length=1025 Score = 655 bits (1689), Expect = 0.0, Method: Composition-based stats. Identities = 287/722 (40%), Positives = 423/722 (59%), Gaps = 51/722 (7%) Query 1 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETV----DGAKVVVLVNR 56 ++LR YQ EV PAL+GKNIII LPTG+GKTR A Y+ K HL+ + KV+VLVN+ Sbjct 307 LQLRPYQMEVAQPALDGKNIIICLPTGSGKTRVAVYITKDHLDKKKQASESGKVIVLVNK 366 Query 57 VHLVTQ-HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE 115 V L Q +EF L + + LSGD + F + + +D++I TA++L+ +L + E Sbjct 367 VMLAEQLFRKEFNPYLKKWYRIIGLSGDTQLKISFPEVVKSYDVIISTAQILENSLLNLE 426 Query 116 --EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQ---------PLPQVL 164 +++ V+L+ FSLI++DECHHT+K+ VYN IM +YL+ KL+ PLPQ+L Sbjct 427 SGDDDGVQLSDFSLIIIDECHHTNKEAVYNNIMRRYLKQKLRNNDLKKQNKPAIPLPQIL 486 Query 165 GLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRR 224 GLTASPG G A K A H+L +CANLD + I + + QL+ ++PCK++ + Sbjct 487 GLTASPGVGAAKKQSEAEKHILNICANLDAFTIKTVKENLGQLKHQIKEPCKKFVIADDT 546 Query 225 SQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHL 284 ++PF + L ++M I + + +S FGTQ YEQ +++ + AA G ++ RV A HL Sbjct 547 RENPFKEKLLEIMASIQTYCQKSPMS-DFGTQHYEQWAIQMEKKAAKDGNRKDRVCAEHL 605 Query 285 RRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQIL----------------------- 321 R+YN+AL I+DT+R +DA + L+ FY E K +L Sbjct 606 RKYNEALQINDTIRMIDAYSHLETFYTDEKEKKFAVLNDSDKSDDEASSCNDQLKGDVKK 665 Query 322 -----CAERRLLALFDDRKNELAHLATHG-PENPKLEMLEKILQRQF-SSSNSPRGIIFT 374 + L+ LF D K L LA + EN KL L + QF S S RGIIFT Sbjct 666 SLKLDETDEFLMNLFFDNKKMLKKLAENPKYENEKLIKLRNTILEQFTRSEESSRGIIFT 725 Query 375 RTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNL 434 +TRQS ++L W+ + V ++A LIGAG+SS+ MTQ +Q+EVI KF+ G +NL Sbjct 726 KTRQSTYALSQWIMENAKFAEVGVKAHHLIGAGHSSEVKPMTQTEQKEVISKFRTGEINL 785 Query 435 LVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFVATEGSRELKREL 494 L+AT+VAEEGLDI CN+V+RYGL+TNEI+MVQARGRARAD+S Y V + GS +RE+ Sbjct 786 LIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADESTYVLVTSSGSGVTEREI 845 Query 495 INEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQL 554 +N+ E +M +A+ VQ M EY KI +LQ ++ ++ + + ++ + L Sbjct 846 VNDFREKMMYKAINRVQNMKPEEYAHKILELQVQSILEKKMKVKRSIAKQYNDNPSLITL 905 Query 555 LCINCMVAVGHGSDLRKVEGTHHVNVNPNFSNYYNVSRDPVVINKVFKDWKPGGVISCRN 614 LC NC + V G ++ +E HHVN+ P F Y + R+ + K F D++ G I C+ Sbjct 906 LCKNCSMLVCSGENIHVIEKMHHVNMTPEFKGLY-IVRENKALQKKFADYQTNGEIICK- 963 Query 615 CGEVWGLQMIYKSVKLPVLKVRSMLLETPQG--RIQAKKWSRVPFSVPDFDFLQHCAENL 672 CG+ WG M++K + LP LK+R+ ++ + Q KKW +P PD D+ ++C + Sbjct 964 CGQAWGTMMVHKGLDLPCLKIRNFVVNFKNNSPKKQYKKWVELPIRFPDLDYSEYCLYSD 1023 Query 673 SD 674 D Sbjct 1024 ED 1025 >sp|O95786|RIGI_HUMAN Antiviral innate immune response receptor RIG-I OS=Homo sapiens OX=9606 GN=RIGI PE=1 SV=2 Length=925 Score = 612 bits (1579), Expect = 0.0, Method: Composition-based stats. Identities = 217/699 (31%), Positives = 357/699 (51%), Gaps = 50/699 (7%) Query 1 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVD---GAKVVVLVNRV 57 + R+YQ E+ +PA++GKN II PTG GKT + + + HL+ KVV N++ Sbjct 241 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQI 300 Query 58 HLVTQHGEEFRRMLDGR-WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE 116 + Q F + + + VT +SG + +D++I T ++L L ++ Sbjct 301 PVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL---KK 357 Query 117 EEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQ-RAQPLPQVLGLTASPGTGGA 175 L++F+L++ DECH+T K YN+IM YL+ KL + PLPQV+GLTAS G G A Sbjct 358 GTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDA 417 Query 176 SKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKK 235 D A++++ +LCA+LD I + ++ +L++ +P K + R D F ++ + Sbjct 418 KNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQ 477 Query 236 LMDQI----HDHLEMPEL-----SRKFGTQMYEQQVVKLSEAAALAGL----QEQRV--- 279 LM + E +R+FGTQ YEQ +V + +A + + +E R+ Sbjct 478 LMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKA 537 Query 280 ---YALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKN 336 Y HLR+YNDAL+I + R DAL L+DF+ +V E+ L F+++ Sbjct 538 LFLYTSHLRKYNDALIISEHARMKDALDYLKDFF--SNVRAAGFDEIEQDLTQRFEEKLQ 595 Query 337 ELAHLAT-HGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQT 395 EL ++ ENPKLE L ILQ ++ + I+F +TR +L W++ L Sbjct 596 ELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSF 655 Query 396 VDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ-DGTLNLLVATSVAEEGLDIPHCNVVV 454 ++ +L G G ++Q+T MT Q+ ++ F+ G N+L+ATSVA+EG+DI CN+V+ Sbjct 656 --LKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVI 713 Query 455 RYGLLTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMD 514 Y + N I M+Q RGR RA S F+ T + +++E IN E +M ++ +Q D Sbjct 714 LYEYVGNVIKMIQTRGRGRARGSK-CFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWD 772 Query 515 QAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPV---EHVQLLCINCMVAVGHGSDLRK 571 +A ++ KI +Q + R++Q + PV E+ +LLC C + +D+R Sbjct 773 EAVFREKILHIQT-------HEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRV 825 Query 572 VEGTHHVNVNPNFSNYYNVSRDPVVINKVFKDWKPGGVISC--RNCGEVWGLQMIYKSVK 629 +E H+ + F + P K F ++ I C +NC WG+ + YK+ + Sbjct 826 IEECHYTVLGDAFKECFVSRPHPK--PKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFE 883 Query 630 LPVLKVRSMLLETPQGRIQ--AKKWSRVPFSVPDFDFLQ 666 +PV+K+ S ++E +Q KW F FD + Sbjct 884 IPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE 922 >sp|Q6Q899|RIGI_MOUSE Antiviral innate immune response receptor RIG-I OS=Mus musculus OX=10090 GN=Rigi PE=1 SV=2 Length=926 Score = 595 bits (1534), Expect = 0.0, Method: Composition-based stats. Identities = 211/699 (30%), Positives = 361/699 (52%), Gaps = 50/699 (7%) Query 1 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVD---GAKVVVLVNRV 57 ++ R+YQ E+ +PA +GKN II PTG GKT + + + HL+ KVV N++ Sbjct 242 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQI 301 Query 58 HLVTQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE 116 + Q F R + + + ++SG H+ +D++I T ++L L + Sbjct 302 PVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNG-- 359 Query 117 EEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQ-PLPQVLGLTASPGTGGA 175 L+VF+L++ DECH+T K+ YN IM +YL+ KL ++ PLPQV+GLTAS G G A Sbjct 360 -AIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRDPLPQVVGLTASVGVGDA 418 Query 176 SKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKK 235 + A+ H+ +LCA LD I + ++ +L++ +P K R+ + F ++ + Sbjct 419 KTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQ 478 Query 236 LMDQIHDHLEMPEL---------SRKFGTQMYEQQVVKLSEAAALAGL----QEQRV--- 279 LM + + +R+FGTQ YEQ +V + +A ++ + +E RV Sbjct 479 LMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKA 538 Query 280 ---YALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKN 336 Y HLR+YNDAL+I + + DAL L+ F+H V + ER L F+++ Sbjct 539 LFLYTSHLRKYNDALIISEDAQMTDALNYLKAFFHD--VREAAFDETERELTRRFEEKLE 596 Query 337 ELAHLAT-HGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQT 395 EL ++ ENPKL L +LQ ++ + I+F +TR +L W+++ L Sbjct 597 ELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSF 656 Query 396 VDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ-DGTLNLLVATSVAEEGLDIPHCNVVV 454 ++ +L G G ++++T MT Q+ V++ F+ G N+L+ATSVA+EG+DI CN+V+ Sbjct 657 --LKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVI 714 Query 455 RYGLLTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMD 514 Y + N I M+Q RGR RA S F+ T + +++E N E +M +++ +Q D Sbjct 715 LYEYVGNVIKMIQTRGRGRARDSK-CFLLTSSADVIEKEKANMIKEKIMNESILRLQTWD 773 Query 515 QAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPV---EHVQLLCINCMVAVGHGSDLRK 571 + ++ + +Q + R++Q + PV E+ +LLC C + +D+R Sbjct 774 EMKFGKTVHRIQ-------VNEKLLRDSQHKPQPVPDKENKKLLCGKCKNFACYTADIRV 826 Query 572 VEGTHHVNVNPNFSNYYNVSRDPVVINKVFKDWKPGGVISC--RNCGEVWGLQMIYKSVK 629 VE +H+ + F + P K++ +++ I C +NC WG+ + YK+ + Sbjct 827 VETSHYTVLGDAFKERFVCKPHPK--PKIYDNFEKKAKIFCAKQNCSHDWGIFVRYKTFE 884 Query 630 LPVLKVRSMLLETPQGRIQAK--KWSRVPFSVPDFDFLQ 666 +PV+K+ S ++E +Q + KW F FD + Sbjct 885 IPVIKIESFVVEDIVSGVQNRHSKWKDFHFERIQFDPAE 923 >sp|Q9GLV6|RIGI_PIG Antiviral innate immune response receptor RIG-I OS=Sus scrofa OX=9823 GN=RIGI PE=2 SV=1 Length=940 Score = 583 bits (1503), Expect = 0.0, Method: Composition-based stats. Identities = 215/704 (31%), Positives = 342/704 (49%), Gaps = 55/704 (8%) Query 1 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVD---GAKVVVLVNRV 57 ++ R YQ E+ +PA GKN II PTG GKT + + + HL+ KVV ++ Sbjct 239 LKPRKYQLELALPAQNGKNTIICAPTGCGKTFVSLLICEHHLKKFPRGRKGKVVFFAIQL 298 Query 58 HLVTQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE 116 + Q F + + + V +SG + D++I T ++L LT+ Sbjct 299 PVYEQQKSVFSKHFERLGYKVAGISGATSDTVCVEQIVENSDIIILTPQILVNCLTNGT- 357 Query 117 EEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQ-RAQPLPQVLGLTASPGTGGA 175 L+VF+L++ DECH+T K YNVIM YL+ KL + LPQV+GLTAS G G A Sbjct 358 --IPSLSVFTLMIFDECHNTSKQHPYNVIMFSYLDRKLGGSSDSLPQVIGLTASVGVGDA 415 Query 176 SKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKK 235 A ++ +LCA+LDT I + ++ +L+E +P K + R+ D F ++ + Sbjct 416 KNKAEATEYICKLCASLDTSVIATVRDNLEELEEVVYKPQKFFRKVELRTTDRFKCIISQ 475 Query 236 LMDQIHDHLEMPEL--------------SRKFGTQMYEQQVVKLSEAAALAGL----QEQ 277 LM +I + + FGTQ YEQ +VK+ + A+ + +E Sbjct 476 LMMEIESLAKSIFEELGTITLGGLFQIQNSNFGTQKYEQWIVKVQKECAVFQMPDKDKES 535 Query 278 RV------YALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALF 331 R+ Y HLR YNDAL+I++ R DAL L+DF+ ++ E+ L F Sbjct 536 RICKALFSYMSHLRIYNDALIINEHARMKDALDYLKDFFR--NIRAAGFDEIEQDLTQRF 593 Query 332 DDRKNELAHLAT-HGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQ 390 +++ EL ++ ENPKL L ILQ ++ + R I+F +TR +L W+++ Sbjct 594 EEKLQELESISIDPSNENPKLRDLCFILQEEYHLNPETRTILFVKTRALVDALKKWIKEN 653 Query 391 QGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN-LLVATSVAEEGLDIPH 449 L ++ +L G G ++Q+ MT Q+ V+ F+ N +L+ TSVA+EG+DI Sbjct 654 PKLSF--LKPSILTGRGKTNQNIGMTLPAQKCVLDTFRTDKDNKILITTSVADEGIDIAQ 711 Query 450 CNVVVRYGLLTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAA 509 CN+V+ Y + N I M+Q RGR RA S F+ T + + +E +N E +M A+ Sbjct 712 CNLVILYEYVGNVIKMIQTRGRGRARGSK-CFLLTANADLIDKEKMNMYKEEMMNGAILI 770 Query 510 VQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEH---VQLLCINCMVAVGHG 566 +Q D+A ++ KI +Q + R+NQ + PV +LLC C + Sbjct 771 LQTWDEAVFKEKIHQIQ-------IREKIIRDNQGKPEPVPDKKTKKLLCKKCKAFACYT 823 Query 567 SDLRKVEGTHHVNVNPNFSNYYNVSRDPVVINKVFKDWKPGGVISCR--NCGEVWGLQMI 624 +D+R VE H V F + P K F + + I C +C WG+ + Sbjct 824 ADIRMVEKCHFTVVGDAFRERFVSKLHPK--PKSFGNIEKRAKIYCARPDCSHDWGIYVR 881 Query 625 YKSVKLPVLKVRSMLLETPQGRIQA--KKWSRVPFSVPDFDFLQ 666 YK+ ++P +K+ S ++E +Q KW F FD + Sbjct 882 YKAFEMPFIKIESFVVEDIATGVQTVHAKWKDFNFEKLSFDAAE 925 >sp|Q4WA22|DCL2_ASPFU Dicer-like protein 2 OS=Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293) OX=330879 GN=dcl2 PE=3 SV=2 Length=1388 Score = 419 bits (1078), Expect = 4e-130, Method: Composition-based stats. Identities = 140/572 (24%), Positives = 236/572 (41%), Gaps = 56/572 (10%) Query 2 ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVV-VLVNRVHLV 60 + R+YQ E++ +++ +NII+ + TG+GKT A K L+ KVV L V L Sbjct 15 QPRNYQLEMLEASMK-ENIIVAMDTGSGKTHIAVLRIKAELDICSPDKVVWFLAPTVALC 73 Query 61 TQHGEEFRRMLDGRWTVTTLSGD----MGPRAGFGHLARCHDLLICTAELLQMALTSPEE 116 Q E L T T D ++ + + + +++ T +L AL+ Sbjct 74 IQQHEVIASNLPAVRTRTLTGLDKVELWTDQSIWDAVLNGYRVIVSTHAVLADALS---- 129 Query 117 EEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQP--LPQVLGLTASPGTGG 174 V+++ +L++ DE HH + N IM + L ++ P +P+++GLTASP Sbjct 130 HGFVKMSQLALLIFDEAHHCTRRHAANKIMQDFYHPTLTKSGPAAVPRIMGLTASPVVRS 189 Query 175 ASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLK 234 + +L + +NLD C +P+ +L + + +P Q DP G Sbjct 190 NHQ------ELLMVESNLDAVC-RTPRLHRQELLKFTHRPHLQQIWY--TPTDPAGFRSA 240 Query 235 KLMDQIHDHLEMPELSRKFGTQMYEQQVVK--LSEAAALAGLQEQRVYAL-HLRRYND-- 289 L L + G Y Q++ K L + A L + Y LRR+ D Sbjct 241 SL---TLGALYHAWENLDIGDDPYIQRLRKSPLDDRALKKALLTGKTYCREQLRRFVDRS 297 Query 290 -ALLIHDTVRAVD-----ALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLAT 343 + A + ++ L+D +++ + L+ H A Sbjct 298 RHIFEELGEWAAEYYIYASIKQLRDRVRDSYMSGDWDEAEKAYLVDFLSKIPTSDIHFAL 357 Query 344 HGPE----NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIR 399 + P+ +PK E L L S G+IF + R + ++ L R Sbjct 358 NDPDGFRISPKFESLLNFLDS--SDQREFSGLIFVKQRVTVSAMTSLLS-VHPYTRERFR 414 Query 400 AQLLIGAGNSSQSTH-----MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV 454 +G NSS S + + Q++ + F+ G NL++AT V EEG+D+ C+VVV Sbjct 415 CAAYVGWSNSSASKDILGDLLNMQLQRDTLDDFRSGRKNLIIATDVLEEGIDLSACSVVV 474 Query 455 RYGLLTNEISMVQARGRARADQSVYAFVA----TEGSRELKRELINEALETLME-----Q 505 Y N S +Q RGRAR QS +A + T ++L +E + Q Sbjct 475 CYDKPPNLKSFIQRRGRARRKQSTFAIMFPTDDTSADVSRWQDLEQAMIEAYQDDERQLQ 534 Query 506 AVAAVQKMDQAEYQAKIRDLQQAALTKRAAQA 537 +V+A++ +D+ + D A LT A A Sbjct 535 SVSALESLDEEVMERLTGDSTSAVLTADMAMA 566 >sp|A1D9Z6|DCL2_NEOFI Dicer-like protein 2 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dcl2 PE=3 SV=1 Length=1388 Score = 419 bits (1077), Expect = 6e-130, Method: Composition-based stats. Identities = 139/572 (24%), Positives = 233/572 (41%), Gaps = 56/572 (10%) Query 2 ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK-VVVLVNRVHLV 60 + R+YQ E++ +++ +NII+ + TG+GKT A K L+ K V L V L Sbjct 15 QPRNYQLEMLEASMK-ENIIVAMDTGSGKTHIAVLRIKAELDICPPDKLVWFLAPTVALC 73 Query 61 TQHGEEFRRMLDGRWTVTTLSGD----MGPRAGFGHLARCHDLLICTAELLQMALTSPEE 116 Q E L T T D ++ + + + +++ T +L AL+ Sbjct 74 IQQHEVIASNLPAVRTRTLTGLDKVELWTEQSIWDAVLNGYRVIVSTHAVLADALS---- 129 Query 117 EEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQP--LPQVLGLTASPGTGG 174 V+++ +L++ DE HH + N IM + L ++ P +P+++GLTASP Sbjct 130 HGFVKMSRLALLIFDEAHHCTRRHAANKIMRDFYHPTLTKSGPGAVPRIMGLTASPVVRS 189 Query 175 ASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLK 234 + +L + +NLD C +P+ +L + + +P Q DP G Sbjct 190 NHQ------ELLTVESNLDAVC-RTPRVHRQELVKFTHRPHLQQIWY--TPTDPAG---F 237 Query 235 KLMDQIHDHLEMPELSRKFGTQMYEQQVVK--LSEAAALAGLQEQRVYAL-HLRRYND-- 289 K Q L + G Y Q++ K L + A L + Y LRR+ D Sbjct 238 KSASQTLGALYHAWETLDIGDDPYIQRLRKSPLDDTALKKALLTGKTYCREQLRRFVDRS 297 Query 290 -ALLIHDTVRAVD-----ALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLAT 343 + A + ++ L D +++ + L+ LA Sbjct 298 RHIFEELGEWAAEYYIYASIKQLGDRVRNSYMSGDWDEAEKAYLVDFLSKIPASEIQLAL 357 Query 344 HGP----ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIR 399 + P +PK E L L S G+IF + R + ++ L + R Sbjct 358 NDPGSFRISPKFESLLNFLDSLDEREFS--GLIFVKQRATVSAMTSLLSVHPCTRE-RFR 414 Query 400 AQLLIGAGNSSQSTH-----MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV 454 +G N S S + + Q++ + F+ G NL++AT V EEG+DI C+VVV Sbjct 415 CAAYVGWSNGSASKDILGDLLNMQLQRDTLDDFRSGRKNLIIATDVLEEGIDISACSVVV 474 Query 455 RYGLLTNEISMVQARGRARADQSVYAFVATEGSRELK----RELINEALETLME-----Q 505 Y N S VQ RGRAR QS +A + ++L +E + Q Sbjct 475 CYDKPPNLKSFVQRRGRARRKQSTFAIMFPTDDASADVSKWQDLEQAMIEAYQDDERQLQ 534 Query 506 AVAAVQKMDQAEYQAKIRDLQQAALTKRAAQA 537 +V+A++ +D+ + + A LT A A Sbjct 535 SVSALESLDEEVMERLTVESTSAVLTADMAMA 566 >sp|A1DE13|DCL1_NEOFI Dicer-like protein 1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dcl1 PE=3 SV=1 Length=1538 Score = 405 bits (1040), Expect = 7e-124, Method: Composition-based stats. Identities = 136/524 (26%), Positives = 221/524 (42%), Gaps = 50/524 (10%) Query 1 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYV----AKRHLETVDGAK----VVV 52 ++ R YQ E+ A + +N I L TG+GKT A + L+ K Sbjct 125 LDPREYQIELFERA-KTQNTIAVLDTGSGKTLIAVLLLRHTILNELDNRANGKPHRVSFF 183 Query 53 LVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMG----PRAGFGHLARCHDLLICTAELLQ 108 LV+ V L Q R +D V G MG + + + + +++CTAE+L Sbjct 184 LVDSVTLAYQQAAVLRNNIDQ--NVAHFFGAMGTDLWDKRTWDEHLQRNMVIVCTAEILN 241 Query 109 MALTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTA 168 L + +V++ +L++ DE HH KD Y I+ + P+V G+TA Sbjct 242 QCLLN----SYVKMDQINLLIFDEAHHAKKDHPYARIIRDSY--FKAQPSQRPRVFGMTA 295 Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 SP + A +L LD+ + + L+E +P ++ + R + P Sbjct 296 SPIDTKGDITEAAT----RLETLLDSRIATTSKITL--LREVVSRPIEKV-WAYNRLESP 348 Query 229 FGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN 288 F L KLMD + ++++ E +F + S+ A L + + L N Sbjct 349 FATELYKLMDTRYGNIKVLEGVYRFAWHASSELGKWCSDRAWWHALADDVLPKLE---GN 405 Query 289 DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPEN 348 + L+ + A +D ++T + A G + Sbjct 406 ISKLVESNTLNAEHGAVFKDIIRIREASET--------------VKNYSFADPELPGELS 451 Query 349 PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN 408 PK+++L L + FS + + I+FT+ R +A L L +R +LIG Sbjct 452 PKVQLLRMELSKHFSDTTGTKCIVFTQKRYTAKILNELFTV---LNIPHLRPGVLIGVRP 508 Query 409 SS-QSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 ++T R Q + KF+ G +N L ATSVAEEGLDIP CN+VVR+ L I VQ Sbjct 509 GDIGGMNVTFRQQFLALVKFRTGEINCLFATSVAEEGLDIPDCNLVVRFDLYRTLIQYVQ 568 Query 468 ARGRARADQSVYAFVATEGSRELKRELIN-EALETLMEQAVAAV 510 +RGRAR S YA + + + E + L E +M++ + Sbjct 569 SRGRARHCTSTYAIMVEKDNAEHEGRLKEIREAEKIMQRFCETL 612 >sp|Q4WVE3|DCL1_ASPFU Dicer-like protein 1 OS=Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293) OX=330879 GN=dcl1 PE=3 SV=3 Length=1537 Score = 401 bits (1031), Expect = 1e-122, Method: Composition-based stats. Identities = 134/524 (26%), Positives = 217/524 (41%), Gaps = 50/524 (10%) Query 1 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYV----AKRHLETVDGAKV----VV 52 ++ R YQ E+ A + +N I L TG+GKT A + L+ K Sbjct 124 LDPREYQIELFERA-KTQNTIAVLDTGSGKTLIAVLLLRHTILNELDDRANGKTHRVSFF 182 Query 53 LVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMG----PRAGFGHLARCHDLLICTAELLQ 108 LV+ V L Q R +D V G MG + + + + +++CTAE+L Sbjct 183 LVDSVTLAYQQAAVLRNNIDQ--NVAHFFGAMGTDLWDKRTWDKHLQRNMVIVCTAEILN 240 Query 109 MALTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTA 168 L + +V + +L++ DE HH KD Y I+ + P+V G+TA Sbjct 241 QCLLN----SYVRMDQINLLIFDEAHHAKKDHPYARIIRDSY--FKAQPSQRPRVFGMTA 294 Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 SP + A +L LD+ + + L+E +P ++ + R + P Sbjct 295 SPIDTKGDITEAAT----RLETFLDSRIATTSKITL--LREVVSRPIEKV-WAYNRLEPP 347 Query 229 FGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN 288 F L KLMD + ++++ E +F + S+ A L + + L N Sbjct 348 FATELYKLMDTRYGNIKVLEGVYRFAWNASSELGKWCSDRAWWHALADDVLPKLE---GN 404 Query 289 DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPEN 348 LI + A +D ++T + G + Sbjct 405 INKLIESNTMKAEHGAVFKDIIRIREASET--------------VKNYFFTDPELPGELS 450 Query 349 PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN 408 PK++ L L + F+ + + I+FT+ R +A L L ++R +LIG Sbjct 451 PKVQRLRMELSKHFNDTTGTKCIVFTQKRYTAKILNELFTV---LNIPNLRPGVLIGVRP 507 Query 409 SS-QSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 ++T R Q + KF+ G +N L ATSVAEEGLDIP CN+V+R+ L I VQ Sbjct 508 GDIGGMNITFRQQFLALVKFRTGEINCLFATSVAEEGLDIPDCNLVIRFDLYRTLIQYVQ 567 Query 468 ARGRARADQSVYAFVATEGSRELKRELIN-EALETLMEQAVAAV 510 +RGRAR S YA + + + E + L E +M + + Sbjct 568 SRGRARHCTSTYAIMVEKDNAEHEGRLKEIREAENIMRRFCEIL 611 >sp|A1CBC9|DCL1_ASPCL Dicer-like protein 1 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=dcl1 PE=3 SV=2 Length=1534 Score = 399 bits (1024), Expect = 1e-121, Method: Composition-based stats. Identities = 133/524 (25%), Positives = 212/524 (40%), Gaps = 50/524 (10%) Query 1 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLET--------VDGAKVVV 52 ++ R YQ E+ A + +N I L TG+GKT A + + L+ Sbjct 121 LDPREYQIELFERA-KAQNTIAVLDTGSGKTLIAVLLLRHVLQNELNDRANGKPHRVSFF 179 Query 53 LVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMG----PRAGFGHLARCHDLLICTAELLQ 108 LV+ V L Q R +D V G MG R + + + +++CTAE+L Sbjct 180 LVDSVTLAYQQAAVLRNNIDQ--NVAHFFGAMGTDLWDRQVWEEHLQQNMVIVCTAEILN 237 Query 109 MALTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTA 168 L + HV + +L++ DE HHT KD Y I+ P++ G+TA Sbjct 238 QCLLN----SHVRMNQINLLIFDEAHHTKKDHPYARIIRDSY--FKASPPQRPRIFGMTA 291 Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 SP + A +L LD+ + + L++ +P ++ + R + P Sbjct 292 SPIDTKGDIIAAAT----RLETLLDSRIATTSKITL--LRQVVSRPIEKV-WAYDRLESP 344 Query 229 FGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN 288 F L KLM+ +++ E +F + S+ A L L + + L Sbjct 345 FKTNLHKLMENRFGNVKALEGVFRFAWYASSELGRWCSDRAWLYALADDVLPKLEGHVNK 404 Query 289 DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPEN 348 A A + ++ K G + Sbjct 405 LAESTAAATERDMAFKEITLIKEASNIVKAHT-----------------FNDPEFPGELS 447 Query 349 PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN 408 PK+ +L+ L + FS + + IIFT+ R +A +L L +R +LIG + Sbjct 448 PKVRLLQTELSKHFSHAPETKCIIFTQKRYTAKTLHELFT---ILSIPHLRPGVLIGVRS 504 Query 409 SS-QSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 ++T R Q + KF+ G +N L ATSVAEEGLDIP CN+VVR+ L I VQ Sbjct 505 GDIGGMNITFRQQFLALVKFRKGEINCLFATSVAEEGLDIPDCNLVVRFDLYHTLIQYVQ 564 Query 468 ARGRARADQSVYAFVATEGSRELKRELIN-EALETLMEQAVAAV 510 +RGRAR S YA + + + + + L E M+ + Sbjct 565 SRGRARHYHSTYASMVEKDNSDHEARLREVREAEKTMQNFCETL 608 >sp|A2RAF3|DCL1_ASPNC Dicer-like protein 1 OS=Aspergillus niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) OX=425011 GN=dcl1 PE=3 SV=2 Length=1525 Score = 397 bits (1020), Expect = 5e-121, Method: Composition-based stats. Identities = 135/530 (25%), Positives = 224/530 (42%), Gaps = 63/530 (12%) Query 1 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLET--------VDGAKVVV 52 ++ R YQ E+ A + +N I L TG+GKT A + K LE Sbjct 115 LDPREYQLELFERA-KVQNTIAVLDTGSGKTLIAVLLLKHTLEKELNDRMEGKPHRIAFF 173 Query 53 LVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAG----FGHLARCHDLLICTAELLQ 108 LV+ V L Q R LD +V G MG + + + +++CTAE+L Sbjct 174 LVDSVTLAYQQAAVLRNNLDQ--SVGHFFGAMGTDLWSKSVWDQHFQKNMVIVCTAEILN 231 Query 109 MALTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTA 168 L + +++++ ++++ DE HHT KD Y I+ ++ P++ G+TA Sbjct 232 QCLLN----SYIKMSQINILIFDEAHHTKKDHPYARIIRDSYLEEV--YSKRPRIFGMTA 285 Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 SP +D A +L LD+ + L++ +++P ++ + + P Sbjct 286 SPIDTKGDIVDEAT----RLEKLLDSRIATTS--NMSLLRQVARRPVERV-WSFNKLEQP 338 Query 229 FGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN 288 F L K ++ + E +F Q + S+ A L Sbjct 339 FATSLYKHLEDRFGDMACLEGIFRFAWQASSELGRWCSDRAWARAL-------------- 384 Query 289 DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAE---RRLLALFDD----RKNELAHL 341 A D L L+ + ++T E + +L + + + + Sbjct 385 ----------ADDVLPKLEGSVRKTANSETSSNVPESAYKEILRITEASEIVKSYAFSSP 434 Query 342 ATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQ 401 T G +PK+++L + L R F + I+FT+ R +A L Q L +R Sbjct 435 ETFGQLSPKVQVLREELARYFGRQTETKCIVFTQKRYTALILAELFQT---LNIPFLRPG 491 Query 402 LLIGAGNSSQ-STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT 460 +LIG + ++T R Q + KF+ G +N L ATSVAEEGLDIP CN+VVR+ L Sbjct 492 VLIGVRSGDLAGMNITFRQQFISLVKFRTGEINCLFATSVAEEGLDIPDCNLVVRFDLYQ 551 Query 461 NEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAV 510 I VQ+RGRAR S YA + G+ E ++ L+ +M+ + Sbjct 552 TLIQYVQSRGRARHFNSTYASMVERGNLEHEQRLLEVQDAEMMQSFCRTL 601 >sp|Q2U6C4|DCL1_ASPOR Dicer-like protein 1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=dcl1 PE=3 SV=2 Length=1523 Score = 395 bits (1014), Expect = 3e-120, Method: Composition-based stats. Identities = 129/530 (24%), Positives = 220/530 (42%), Gaps = 63/530 (12%) Query 1 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLET--------VDGAKVVV 52 ++ R YQ E+ A + +N I L TG+GKT A + K ++ Sbjct 114 LDPREYQVELFERA-KSQNTIAVLDTGSGKTLIAVLLLKHIIQNELIDRANGKPPRISFF 172 Query 53 LVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAG----FGHLARCHDLLICTAELLQ 108 LV+ V L Q R LD V G MG + H + +++CTAE+L Sbjct 173 LVDSVTLAFQQAAVLRNNLDQ--NVAQFFGAMGTDLWSKQTWDHQFENNMVIVCTAEILN 230 Query 109 MALTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTA 168 L + ++ + +L++ DE HHT KD Y I+ + P++ G+TA Sbjct 231 QCLLN----SYIRMDQINLLIFDEAHHTKKDHPYARIIRESY--LKADPTKRPRIFGMTA 284 Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 SP ++ A +L LD+ + + L+E ++P ++ + + + P Sbjct 285 SPIDTKGDIIESAT----KLEVLLDSKIATTSKPNL--LREVVRRPIEE-SWEYDKLDPP 337 Query 229 FGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN 288 F L +++ + + +F L ++ L R +A L Sbjct 338 FATKLYQILQARFGDISSLQPVFRFT----------LQASSELGPCCADRAWAYAL---- 383 Query 289 DALLIHDTVRAVDALAALQDFYHR--EHVTKTQILCAERRLLALFDD----RKNELAHLA 342 A D L L+ + + ++ CA + + + + + + Sbjct 384 ----------ADDVLPKLEGNVRKLAQSISSPIPQCALKEISRIQEASDIVKNHSFNSPN 433 Query 343 THGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL 402 G +PK+++L + L + F + I+FT+ R +A L L+ +R + Sbjct 434 VPGELSPKVQLLRQKLIKYFEHPTKTKCIVFTQKRYTAKMLFDLFST---LEIPYLRPGV 490 Query 403 LIGAGNSSQ-STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN 461 LIG + +++ R Q + KF+ G +N L ATSVAEEGLDIP CN+VVR+ L Sbjct 491 LIGVRSGDIVGMNVSFRQQFLALVKFRSGEINCLFATSVAEEGLDIPDCNLVVRFDLYNT 550 Query 462 EISMVQARGRARADQSVYAFVATEGSRELKRELIN-EALETLMEQAVAAV 510 I VQ+RGRAR S YA + + + L+ E LM+ + Sbjct 551 LIQYVQSRGRARHSSSTYASMIERYNADHAARLVEVREAEKLMQSFCETL 600 >sp|Q1DKI1|DCL1_COCIM Dicer-like protein 1 OS=Coccidioides immitis (strain RS) OX=246410 GN=DCL1 PE=3 SV=3 Length=1500 Score = 392 bits (1006), Expect = 3e-119, Method: Composition-based stats. Identities = 125/526 (24%), Positives = 208/526 (40%), Gaps = 51/526 (10%) Query 2 ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLET--------VDGAKVVVL 53 + R YQ E+ A + NII L TG+GKT A + K +E L Sbjct 98 DPREYQVELFEKAKKD-NIIAVLDTGSGKTLIAVLLLKHIIEQELIDRSAEKPHRVSFFL 156 Query 54 VNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAG----FGHLARCHDLLICTAELLQM 109 V+ V LV Q + ++ R V G M + + +++CTAE+L Sbjct 157 VDSVTLVFQQAAVLQNNINQR--VDKFCGAMETDLWNGETWERHLAKNMVIVCTAEVLYQ 214 Query 110 ALTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS 169 L V++ +L++ DE H+ KD Y I+ + P++ G+TAS Sbjct 215 CLL----HAFVKMENINLLIFDEAHNAKKDHPYARIVKDFY--LKDGNAKRPKIFGMTAS 268 Query 170 PGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPF 229 P + A N L + + T L++ +P ++ + R PF Sbjct 269 PVDAKMDVVKAARNLETLLNSQIATAS------NLSLLRQSVPRPNEEV-WSYDRLDQPF 321 Query 230 GDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND 289 L K + L E F + ++ L E+ + L R Sbjct 322 ETRLYKELRSRFGDLRALEKLFTFSLKASSNLGAWCADWVWSYALTEESLPKLEGRAART 381 Query 290 ALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENP 349 A+ + V A +Q + ++ L +P Sbjct 382 AMGNLPIAKIVRPEAEIQRIREASEIIRSHKFGDPAVRPELL----------------SP 425 Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG-AGN 408 K+ L L + F + I+FT R +A L + T +R +LIG + Sbjct 426 KVRRLHHELLKYFERHTDTKCIVFTEQRHTARILCDLFSRIG---TKHLRPGVLIGVRSD 482 Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 +S +++ R Q + F+ G +N L ATSVAEEGLDIP CN++VR+ L + +Q+ Sbjct 483 ASGGMNISFRQQVLAVVSFRKGEVNCLFATSVAEEGLDIPDCNLIVRFDLASTLTQYIQS 542 Query 469 RGRARADQSVYAFVATEGSRELKRELIN--EALETLMEQAVAAVQK 512 RGRAR S +A + + + RE +N ++ E +M++ ++ K Sbjct 543 RGRARHMNSTFAHLVERDNF-VHRESVNHLQSSEEIMKRFCISLPK 587 >sp|A1C9M6|DCL2_ASPCL Dicer-like protein 2 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=dcl2 PE=3 SV=1 Length=1389 Score = 389 bits (998), Expect = 1e-118, Method: Composition-based stats. Identities = 130/573 (23%), Positives = 231/573 (40%), Gaps = 58/573 (10%) Query 2 ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVV-VLVNRVHLV 60 + R+YQ E++ +++ +NII+ + TG+GKT A K L++ K++ L V L Sbjct 15 QARNYQLEMLEASMK-ENIIVAMDTGSGKTHIAVLRIKAELDSCPPDKIIWFLAPTVALC 73 Query 61 TQHGEEFRRMLDGRWTVTTLSGD----MGPRAGFGHLARCHDLLICTAELLQMALTSPEE 116 TQ + L T T D +A + + + +++ T +L AL+ Sbjct 74 TQQHKVIASNLPAVQTRTLTGLDKVELWTEQAIWDAILKDVRVVVSTYAVLADALS---- 129 Query 117 EEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQP--LPQVLGLTASPGTGG 174 + ++ +LI+ DE HH + N IM + + + P +P+++GLTASP Sbjct 130 HGFMRMSRLALIIFDEAHHCMRKHAANKIMQDFYHPTVSKFGPSAVPRIMGLTASPVVRS 189 Query 175 ASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFG-DLL 233 + + NLD C +P+ +L + S +P + L DP G + Sbjct 190 NR------EELFTIETNLDAVC-KTPRAHRQELLKFSHRPELKQLLYE--PPDPMGLQVS 240 Query 234 KKLMDQIHDHLEMPELSRKFGTQMYEQQVVK--LSEAAALAGLQEQRVYAL-HLRRYND- 289 + + + + E ++ Y +++ K L A L + + L+R+ D Sbjct 241 SQTLRALIEAWETLDI----EDDPYVKRLRKSSLDGGALEKALMTGKTFCREQLKRFVDR 296 Query 290 --ALLIHDTVRAVD-----ALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLA 342 + A D ++ L+ ++T L++ + Sbjct 297 SRHIFEELGEWAADYYIYTSIQHLKTRVQTSYMTGDWDEAERAYLVSFLSKLPAADIQIT 356 Query 343 THGP----ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI 398 +PKLE L L G+IF + R + + L + Sbjct 357 LSDAACLRISPKLEALIGFLDAM--DDPEFSGLIFVKQRATVSVMTDLLAVHPRTRE-RF 413 Query 399 RAQLLIGAGNSSQSTH-----MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV 453 R+ +G NSS S ++ Q + F+ G NL++AT V EEG+DI C+VV Sbjct 414 RSAAYVGWSNSSGSKDFLGNLLSMHGQLSTLDDFRSGHKNLIIATDVLEEGIDISACSVV 473 Query 454 VRYGLLTNEISMVQARGRARADQSVYAFVA--TEGSRELKRE--LINEALETLME----- 504 V Y N S VQ RGRAR QS YA + + + +L + L +E + Sbjct 474 VCYDKPPNLKSFVQRRGRARQKQSTYAIMFPAEDSAFDLAKWQTLEQAMIEAYQDDERHL 533 Query 505 QAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQA 537 Q+ ++++++ + + A LT A A Sbjct 534 QSAIELERVNEEVVERFTVESTSAVLTADTAMA 566 >sp|Q0CW42|DCL1_ASPTN Dicer-like protein 1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=dcl1 PE=3 SV=2 Length=1519 Score = 386 bits (990), Expect = 6e-117, Method: Composition-based stats. Identities = 138/558 (25%), Positives = 225/558 (40%), Gaps = 67/558 (12%) Query 1 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETV--------DGAKVVV 52 + R YQ E+ A + +N I L TG+GKT A + K ++T Sbjct 107 LNPREYQIELFERA-KVQNTIAVLDTGSGKTLIAVLLLKHVIQTELIDRANGNPPRISFF 165 Query 53 LVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAG----FGHLARCHDLLICTAELLQ 108 LV+ V LV Q R LD V G MG + + +++CTAE+L Sbjct 166 LVDSVTLVYQQASVLRNNLDQ--NVAHFFGAMGVDLWNKQTWAEHFEKNMVIVCTAEILN 223 Query 109 MALTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTA 168 L + ++ + +L+V DE HHT KD Y I+ ++ P++ G+TA Sbjct 224 QCLLN----AYITMQQINLLVFDEAHHTKKDHPYARIIRDSYLRVPPSSR--PRIFGMTA 277 Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 SP L+ A N L A LD+ + + L++ +P ++ + + + Q Sbjct 278 SPVDTKGDVLEAARN----LEALLDSKIATTSKLTI--LRQVVNRPNEEVWI-YDKLQPT 330 Query 229 FGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN 288 F L KLM+ + E +F + L RV+ L Sbjct 331 FTSDLYKLMESRFGDISHLEPMFRFARHATSE----------LGTWCADRVWVSAL---- 376 Query 289 DALLIHDTVRAVDALAALQDFY--HREHVTKTQILCAERRLLALFDDRKNELAHLATHGP 346 A D L ++ R+ Q+ R + + + + P Sbjct 377 ----------ADDVLPKVEGSIGGKRQSTGLGQLPKDVHRDITRIKEASELVESHPPNDP 426 Query 347 -----ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQ 401 + K+ +L K + + F + + I+FT R +A L L +R Sbjct 427 GAPEALSSKVRVLWKEISQCFGQETNTKCIVFTEKRYTAKVLFDLFTV---LNVPGLRPG 483 Query 402 LLIGAGNSSQ-STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT 460 +LIG +S + ++T R Q + +F+ G +N L AT+VAEEGLDIP CN+VVR+ L Sbjct 484 VLIGVRSSDRIGMNVTFRQQILTMVRFRTGEINCLFATAVAEEGLDIPDCNLVVRFDLYK 543 Query 461 NEISMVQARGRARADQSVYAFVATEGSRELKRELIN-EALETLMEQAVAAVQKMDQAEYQ 519 I VQ+RGRAR S YA + + + + + L+ E +M+ Q + + Sbjct 544 TLIQYVQSRGRARHADSTYASMIEKDNADHESILVQVNDAEKIMQSFC---QLLPEDRIL 600 Query 520 AKIRDLQQAALTKRAAQA 537 D A L + + Sbjct 601 HGNDDDTDAVLDREEWEE 618 >sp|Q0CEI2|DCL2_ASPTN Dicer-like protein 2 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=dcl2 PE=3 SV=2 Length=1377 Score = 380 bits (975), Expect = 2e-115, Method: Composition-based stats. Identities = 136/576 (24%), Positives = 227/576 (39%), Gaps = 55/576 (10%) Query 1 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK-VVVLVNRVHL 59 R+YQ E+ +L+ +NII+ + TG+GKT A LET K + L V L Sbjct 14 FCPRNYQTEMFEASLQ-ENIIVAMDTGSGKTHVALLRIMNELETRRPQKLIWFLAPTVAL 72 Query 60 VTQHGEEFRRMLDGRWTVTTLSGD----MGPRAGFGHLARCHDLLICTAELLQMALTSPE 115 Q + + L + T D +A + + + +++ T +L A+++ Sbjct 73 CFQQHDVITKNLPAVKSRTLTGQDKVELWTEQAIWDAILKDMQVVVSTHAVLADAMSN-- 130 Query 116 EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQP--LPQVLGLTASPGTG 173 V ++ L++ DE HH + N IM + L + P +P +LGLTASP Sbjct 131 --GFVRVSQLGLLIFDEAHHCMRRHPANRIMQDFYHPTLVKQGPDAVPGILGLTASPVVR 188 Query 174 GASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLL 233 S+ + + +N++ C +P+ +L H+ +P Q + D Sbjct 189 TNSQ------ELSMIESNMNAIC-KTPRAHRQELLTHTHRPHLQQIWYTPVNIDDPTSGT 241 Query 234 KKLMDQIHDHLEMPELSRKFGTQMYEQQVVK--LSEAAALAGLQEQRVYALH-LRRYND- 289 + L IH + Y +Q+ + A L ++ Y LRR+ + Sbjct 242 RTLRALIHAWETI-----DLEDDPYVKQLRRSTFDGKALQKALLTRKTYCNESLRRFVER 296 Query 290 --ALLIHDTVRAVDALAALQDFYHREHVTKTQILC----AERRLLALFDDRKNELAHLAT 343 + AVD RE + + ++ E+ LA F + Sbjct 297 SCHIFQELGGWAVDYFIHASIRRLREKIDDSALMLDWDNEEKEYLASFLSNIATIQSDPP 356 Query 344 HGPE----NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIR 399 PE +PKLE L L S+ S G+IF + R + L L L R Sbjct 357 RRPEDFIPSPKLEALISFLSSTDDSTFS--GLIFAKQRATVTVLATLLS-VHPLTKDRFR 413 Query 400 AQLLIGAGNSSQSTHM-----TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV 454 +G + + + Q++ + +F+ G NL+VAT V EEG+DI C+VV+ Sbjct 414 CAAFVGWSGGGNRKDLIGELLSMQMQRDTLSEFRSGQKNLIVATDVLEEGIDISACSVVI 473 Query 455 RYGLLTNEISMVQARGRARADQSVYAFVATEGSR-------ELKRELINEALETLMEQAV 507 Y N S VQ RGRAR +S +A + + +L E + EA + + Sbjct 474 CYDKPANVKSFVQRRGRARRKESTFAILFSTDDELCDLRKWQLLEEAMIEAYQDDERKRC 533 Query 508 A--AVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRE 541 A++ M + + + A LT A A Sbjct 534 EALALETMAEVVTERFEVESTGAVLTADTAVARLHH 569 >sp|A1D4V5|MPH1_NEOFI ATP-dependent DNA helicase mph1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=mph1 PE=3 SV=1 Length=1111 Score = 373 bits (958), Expect = 9e-115, Method: Composition-based stats. Identities = 134/591 (23%), Positives = 230/591 (39%), Gaps = 76/591 (13%) Query 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQH 63 R YQ+ + L N+++ LPTG GKT AA + A+++ + LV Q Sbjct 300 RDYQFNIAQRGL-FHNLLVALPTGLGKTFIAATIMLNWYRWTKSAQIIFVAPTKPLVAQQ 358 Query 64 GEE-FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 F+ R T L+G+ P + + T + L L S + Sbjct 359 ISACFQVAGIPRSQTTMLTGEAAP-GIRAEEWKSKRVFFMTPQTLVNDLKS----GIADP 413 Query 123 TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLD--- 179 L+VVDE H Y ++ L+R +VL LTA+PG+ S Sbjct 414 KRIVLLVVDEAHRATGGYAYVEVVKF-----LKRYNKSFRVLALTATPGSTVESVQAVID 468 Query 180 --GAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLM 237 G ++ +LD + ++ Q ++S + + F L+ L+ Sbjct 469 GLGIAKVEIRTEQSLDIREYVHARDTEVQTFKNSDEMV--------LCMELFTRTLQPLV 520 Query 238 DQIHD----HLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALL- 292 DQ+ + P FG QQ + G R L L+ +A+ Sbjct 521 DQLRNLNAYWGRDPMALTAFGLTKARQQWM---------GSDAGRNANLGLKGKVNAIFT 571 Query 293 -IHDTVRAVDALAA--LQDFY----HREHVTKTQILCAERRLLALFDDRKNELAHLA--T 343 + A+D L + FY H + T Q +R + + K + HL T Sbjct 572 VLASLAHAIDLLKYHGITPFYRHLLHFQSNTDGQKGGKYQRQIVQDESFKKLMNHLQPWT 631 Query 344 HGPE---NPKLEMLEKILQRQF------------SSSNSPRGIIFTRTRQSAHSLLLWLQ 388 PE +PKLE L++++ F S ++ R +IF R SA ++ L+ Sbjct 632 KNPEFIGHPKLEYLKQVVLNHFMDRGEGTAANGDQSQSATRIMIFVHFRDSAEEVVRVLK 691 Query 389 QQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIP 448 + + L IR + +G ++ S M Q+ Q ++QKF+ GT N +VATS+ EEGLDI Sbjct 692 RYEPL----IRPHVFVGQSSAKGSEGMDQKTQLSIVQKFKKGTYNTIVATSIGEEGLDIG 747 Query 449 HCNVVVRYGLLTNEISMVQARGRARADQSV-YAFVATEGSRELKRELINEALETLMEQAV 507 +++V Y + I M+Q GR ++ + +G E + E + + Sbjct 748 EVDLIVCYDSSASPIRMLQRMGRTGRKRAGNIVLLLMQGKEEESYIKAKDNYEKMQQMIA 807 Query 508 AAVQKMDQAEYQAKIR--------DLQQAALTKRAAQAAQRENQRQQFPVE 550 + + + +I + +Q + QA E +++ P + Sbjct 808 SGTRFTFHDDTSPRILPPGVRPVAEKRQIDIPVENTQADLPEPRKRARPPK 858 >sp|P0C5H7|DCL2_EMENI Dicer-like protein 2 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=dcl2 PE=3 SV=1 Length=1429 Score = 378 bits (971), Expect = 1e-114, Method: Composition-based stats. Identities = 128/529 (24%), Positives = 213/529 (40%), Gaps = 56/529 (11%) Query 2 ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVT 61 RSYQ E+ +L+G NII+ + TG+GKT+ A LE DG + L V L Sbjct 13 RARSYQLEMFEASLKG-NIIVVMGTGSGKTQIALLRIIHELENSDGKLIWFLAPTVPLCL 71 Query 62 QHGEEFRRMLDGRWTVTTLSGD----MGPRAGFGHLARCHDLLICTAELLQMALTSPEEE 117 Q + + + T L D +A + + +++ T +L A+T Sbjct 72 QQHRVISQHIPAVKSRTLLGSDKVELWTEQAVWDAVLEGLQVIVSTPAVLHDAMT----H 127 Query 118 EHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQP--LPQVLGLTASPGTGGA 175 V ++ L++ DE HH + N+IM + LQ P +P++LGLTAS G+ Sbjct 128 GFVRISRLGLLIFDEAHHCIRKHPTNMIMRNFYHPALQEYGPGAVPRILGLTASAGSSR- 186 Query 176 SKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKK 235 + + NL++ C +PQ +L E++ P + L Sbjct 187 -------EGLQTIEMNLNSVCT-TPQAHRQELLEYTHMPELRRVLY------------TP 226 Query 236 LMDQIHDHLEMPELSRKFG-TQMYEQQVVKLSEAAALAGLQEQRVYA--LHLRRYNDALL 292 LM + E L + Y +K A+ QE ++A +R + LL Sbjct 227 LMKENASLWEGSTLQKLLERDNTYCSGQMKTFVCKAVHIFQELGIWAAEYFIRASVEELL 286 Query 293 IHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLE 352 H V + L + Y ++K+ + + D P +PK E Sbjct 287 SHAYVHSKIDLDYDEREYLVNILSKSPVPDIDVHSTDPKDF------------PVSPKFE 334 Query 353 MLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQS 412 L L + S G+IF R A +++ +L R IG NS+ Sbjct 335 ALISFLMSTEDINFS--GLIFVEQRA-AVTVMSYLLSTHPSTRDRFRTGSFIGMSNSTNR 391 Query 413 THM-----TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 M + + Q + + F+ G NL+VAT V +EG+D+ C+VV+ Y + S +Q Sbjct 392 KTMLGDLLSAKMQPDTLDDFRYGRKNLIVATDVLKEGIDVSACSVVICYNIPKGFESFIQ 451 Query 468 ARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQA 516 RGRAR S Y+ + + + + E +ME+A ++ + Sbjct 452 RRGRARRQNSTYSMMLSTEDDGSTLDKWQK-FEKIMEEACLEDRRRTEE 499 >sp|Q4WKB5|MPH1_ASPFU ATP-dependent DNA helicase mph1 OS=Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293) OX=330879 GN=mph1 PE=3 SV=1 Length=1101 Score = 372 bits (954), Expect = 3e-114, Method: Composition-based stats. Identities = 135/586 (23%), Positives = 229/586 (39%), Gaps = 77/586 (13%) Query 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQH 63 R YQ+ + L N+++ LPTG GKT AA + A+++ + LV Q Sbjct 290 RDYQFNIAQRGL-FHNLLVALPTGLGKTFIAATIMLNWYRWTKSAQIIFVAPTKPLVAQQ 348 Query 64 GEE-FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 F+ R T L+G+ P + + T + L L S + Sbjct 349 ISACFQVAGIPRSETTMLTGEAAP-GIRAEEWKSKRVFFMTPQTLVNDLKS----GIADP 403 Query 123 TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLD--- 179 L+VVDE H Y ++ L+R +VL LTA+PG+ S Sbjct 404 KRIVLLVVDEAHRATGGYAYVEVVKF-----LKRYNKSFRVLALTATPGSTVESVQAIID 458 Query 180 --GAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLM 237 G ++ +LD + ++ Q ++S + + F L+ L+ Sbjct 459 DLGIAKVEIRTEQSLDIREYVHARDTEVQTFQNSDEMV--------LCMELFTRTLQPLV 510 Query 238 DQIHD----HLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALL- 292 DQ+ + P FG QQ + G R L L+ +A+ Sbjct 511 DQLRNLNAYWGRDPMALTAFGLTKARQQWM---------GSDAGRNANLALKGKVNAIFT 561 Query 293 -IHDTVRAVDALAA--LQDFY----HREHVTKTQILCAERRLLALFDDRKNELAHLA--T 343 + A+D L + FY H + T Q +R + + K + HL T Sbjct 562 VLASLAHAIDLLKYHGITPFYRHLLHFQSNTDGQKGGKYQRQIVQDESFKKLMNHLQPWT 621 Query 344 HGPE---NPKLEMLEKILQRQF------------SSSNSPRGIIFTRTRQSAHSLLLWLQ 388 P+ +PKLE L++++ F S ++ R +IF R SA ++ L+ Sbjct 622 KNPDFIGHPKLEYLKQVVLNHFMDRGEGTAANGDQSQSATRIMIFVHFRDSAEEVVRVLK 681 Query 389 QQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIP 448 + + L IR + +G ++ S M Q+ Q ++QKF+ GT N +VATS+ EEGLDI Sbjct 682 RHEPL----IRPHVFVGQSSAKGSEGMDQKTQLSIVQKFKKGTYNTIVATSIGEEGLDIG 737 Query 449 HCNVVVRYGLLTNEISMVQARGRARADQSV-YAFVATEGSRELKRELINEALETLMEQAV 507 +++V Y + I M+Q GR ++ + +G E + E + Sbjct 738 EVDLIVCYDSSASPIRMLQRMGRTGRKRAGNIVLLLMQGKEEESYIKAKDNYEKM----- 792 Query 508 AAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQ 553 Q+M + + D + + + E ++ PVE+ Q Sbjct 793 ---QQMIASGTRFTFHDDKSPRILPPGVRP-VAEKRQIDIPVENTQ 834 >sp|B0XMV6|MPH1_ASPFC ATP-dependent DNA helicase mph1 OS=Aspergillus fumigatus (strain CBS 144.89 / FGSC A1163 / CEA10) OX=451804 GN=mph1 PE=3 SV=1 Length=1101 Score = 372 bits (954), Expect = 3e-114, Method: Composition-based stats. Identities = 135/586 (23%), Positives = 229/586 (39%), Gaps = 77/586 (13%) Query 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQH 63 R YQ+ + L N+++ LPTG GKT AA + A+++ + LV Q Sbjct 290 RDYQFNIAQRGL-FHNLLVALPTGLGKTFIAATIMLNWYRWTKSAQIIFVAPTKPLVAQQ 348 Query 64 GEE-FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 F+ R T L+G+ P + + T + L L S + Sbjct 349 ISACFQVAGIPRSETTMLTGEAAP-GIRAEEWKSKRVFFMTPQTLVNDLKS----GIADP 403 Query 123 TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLD--- 179 L+VVDE H Y ++ L+R +VL LTA+PG+ S Sbjct 404 KRIVLLVVDEAHRATGGYAYVEVVKF-----LKRYNKSFRVLALTATPGSTVESVQAIID 458 Query 180 --GAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLM 237 G ++ +LD + ++ Q ++S + + F L+ L+ Sbjct 459 DLGIAKVEIRTEQSLDIREYVHARDTEVQTFQNSDEMV--------LCMELFTRTLQPLV 510 Query 238 DQIHD----HLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALL- 292 DQ+ + P FG QQ + G R L L+ +A+ Sbjct 511 DQLRNLNAYWGRDPMALTAFGLTKARQQWM---------GSDAGRNANLALKGKVNAIFT 561 Query 293 -IHDTVRAVDALAA--LQDFY----HREHVTKTQILCAERRLLALFDDRKNELAHLA--T 343 + A+D L + FY H + T Q +R + + K + HL T Sbjct 562 VLASLAHAIDLLKYHGITPFYRHLLHFQSNTDGQKGGKYQRQIVQDESFKKLMNHLQPWT 621 Query 344 HGPE---NPKLEMLEKILQRQF------------SSSNSPRGIIFTRTRQSAHSLLLWLQ 388 P+ +PKLE L++++ F S ++ R +IF R SA ++ L+ Sbjct 622 KNPDFIGHPKLEYLKQVVLNHFMDRGEGTAANGDQSQSATRIMIFVHFRDSAEEVVRVLK 681 Query 389 QQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIP 448 + + L IR + +G ++ S M Q+ Q ++QKF+ GT N +VATS+ EEGLDI Sbjct 682 RHEPL----IRPHVFVGQSSAKGSEGMDQKTQLSIVQKFKKGTYNTIVATSIGEEGLDIG 737 Query 449 HCNVVVRYGLLTNEISMVQARGRARADQSV-YAFVATEGSRELKRELINEALETLMEQAV 507 +++V Y + I M+Q GR ++ + +G E + E + Sbjct 738 EVDLIVCYDSSASPIRMLQRMGRTGRKRAGNIVLLLMQGKEEESYIKAKDNYEKM----- 792 Query 508 AAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQ 553 Q+M + + D + + + E ++ PVE+ Q Sbjct 793 ---QQMIASGTRFTFHDDKSPRILPPGVRP-VAEKRQIDIPVENTQ 834 >sp|Q2URJ5|MPH1_ASPOR ATP-dependent DNA helicase mph1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=mph1 PE=3 SV=2 Length=1129 Score = 372 bits (955), Expect = 4e-114, Method: Composition-based stats. Identities = 132/575 (23%), Positives = 221/575 (38%), Gaps = 56/575 (10%) Query 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQH 63 R YQ+ + L N+++ LPTG GKT AA + + A+++ + LV Q Sbjct 325 RDYQFNIAQKGL-FHNLLVALPTGLGKTFIAATIMLNWFRWTESAQIIFVAPTKPLVAQQ 383 Query 64 GEE-FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 F R T L+G+ P + + T + L L S + Sbjct 384 ISACFGIAGIPRSQTTMLTGEAAP-GIRAEEWQNKRVFFMTPQTLINDLKS----GIADP 438 Query 123 TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG-- 180 L+VVDE H Y ++ L+R +VL LTA+PG+ S Sbjct 439 KRIVLLVVDEAHRATGGYAYVEVVKF-----LRRYNQSFRVLALTATPGSTVESVQAVID 493 Query 181 --AINHV-LQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLM 237 I V ++ +LD + +N Q ++S++ LC L+ +L Sbjct 494 GLDIARVEIRTEQSLDIREYVHSRNTEVQTFKNSEEMV----LCMDLLSKTLQPLVDQLR 549 Query 238 DQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTV 297 P + FG QQ + + +V A+ ++ Sbjct 550 TLNAYWGRDPMMLTAFGLTKSRQQWMASDAGRNAHFGLKGKVNAIF-------TVLASLA 602 Query 298 RAVDALAA--LQDFY----HREHVTKTQILCAERRLLALFDDRKNELAHLA--THGPE-- 347 A+D L + FY H + T+ Q +R + + K + HL T PE Sbjct 603 HAIDLLKYHGITPFYRHLLHFQSNTEGQKGGKYQRQVVQDESFKKLINHLQPWTKNPEFI 662 Query 348 -NPKLEMLEKILQRQF------------SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQ 394 +PKLE L+ ++ F S +S R +IF R SA + L++ + + Sbjct 663 GHPKLEYLKSVVLNHFMDAGEGSNGEASDSQSSTRIMIFVHFRDSAEEVTRVLKRYEPM- 721 Query 395 TVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV 454 IR + +G ++ S M Q+ Q +++QKF+ GT N +VATS+ EEGLDI +++V Sbjct 722 ---IRPHVFVGQSSAKGSEGMGQKTQLDIVQKFKKGTYNTIVATSIGEEGLDIGEVDLIV 778 Query 455 RYGLLTNEISMVQARGRARADQSV-YAFVATEGSRELKRELINEALETLMEQAVAAVQKM 513 Y + I M+Q GR ++ + EG E + E + + + + Sbjct 779 CYDSSASPIRMLQRMGRTGRKRAGNIVLLLMEGKEEESYIKAKDNYEKMQQMIASGSRFT 838 Query 514 DQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFP 548 + +I + + EN Q P Sbjct 839 FHDDISPRILPAGIRPVADKRHIDIPDENAEQSLP 873 >sp|A1CS00|MPH1_ASPCL ATP-dependent DNA helicase mph1 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=mph1 PE=3 SV=1 Length=1119 Score = 369 bits (947), Expect = 4e-113, Method: Composition-based stats. Identities = 131/582 (23%), Positives = 220/582 (38%), Gaps = 69/582 (12%) Query 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQH 63 R YQ+ + L N+++ LPTG GKT AA + ++++ + LV+Q Sbjct 307 RDYQFNITQRGL-FHNLLVALPTGLGKTFIAATIMLNWYRWTKSSQIIFVAPTKPLVSQQ 365 Query 64 GEE-FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 F R T L+G+ P + + T + L L S + Sbjct 366 ISACFGIAGIPRSQTTMLTGEAAP-GIRAEEWKAKRVFFMTPQTLINDLKS----GIADP 420 Query 123 TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLD--- 179 L+VVDE H Y ++ ++R +VL LTA+PG+ S Sbjct 421 KRIVLLVVDEAHRATGGYAYVEVVKF-----IKRYNKSFRVLALTATPGSTVESVQAVID 475 Query 180 --GAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLM 237 ++ +LD + +N Q ++S + LC L+ +L Sbjct 476 GLDIAKVEIRTEQSLDIREYVHARNTDVQTFQNSDEMV----LCMDLFSRTLQPLVDQLC 531 Query 238 DQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALL--IHD 295 + P FG QQ + LS+ R L+ +A+ + Sbjct 532 SLNAYWGKDPMALTPFGLTKARQQWM-LSD--------AGRNANYGLKGKVNAIFTVLAS 582 Query 296 TVRAVDALAA--LQDFY----HREHVTKTQILCAERRLLALFDDRKNELAHLA--THGPE 347 A+D L + FY H T Q +R + + K + HL T PE Sbjct 583 LAHAIDLLKYHGITPFYRHLVHFRSNTDGQKGGKYQRQIVQDESFKKLMNHLQPWTKNPE 642 Query 348 ---NPKLEMLEKILQRQFSSSNS------------PRGIIFTRTRQSAHSLLLWLQQQQG 392 +PKLE L++++ F + R ++F R SA ++ L++ + Sbjct 643 FIGHPKLEYLKQVVLNHFMDAGEGSGADGNHTRSATRIMVFAHFRDSAEEIVRVLKRYEP 702 Query 393 LQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNV 452 L IR + +G ++ S M Q+ Q ++QKF+ G N +VATS+ EEGLDI ++ Sbjct 703 L----IRPHVFVGQSSAKGSEGMDQKTQLSIVQKFKKGDYNTIVATSIGEEGLDIGEVDL 758 Query 453 VVRYGLLTNEISMVQARGRARADQSV-YAFVATEGSRELKRELINEALETLMEQAVAAVQ 511 +V Y + I M+Q GR ++ + +G E + E + E + + Sbjct 759 IVCYDSSASPIRMLQRMGRTGRKRAGNIVLLLMQGKEEESYIRAKDNYEKMQEMIASGTR 818 Query 512 KMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQ 553 A D L A + ++ PVE+ Q Sbjct 819 F-------AFHDDTSPRILPPGIRPTA--DKKQIDIPVENTQ 851 >sp|Q2VF18|DCL2_CRYPA Dicer-like protein 2 OS=Cryphonectria parasitica OX=5116 GN=DCL-2 PE=3 SV=1 Length=1451 Score = 373 bits (958), Expect = 1e-112, Method: Composition-based stats. Identities = 130/557 (23%), Positives = 231/557 (41%), Gaps = 61/557 (11%) Query 1 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVV-VLVNRVHL 59 M+ R+YQ E++ +L+ +NII + TG+GKT A K LE + +VV L V L Sbjct 61 MDARAYQLEMLEASLK-ENIICAMDTGSGKTHVAILRIKAELEEMPEGQVVWFLTPTVSL 119 Query 60 VTQHGEEFRRMLDGRWTVTTLSGDMGPRA---GFGHLARCHDLLICTAELLQMALTSPEE 116 Q + + T D + ++I T ++L AL Sbjct 120 CAQQYAVVKAQIPSVQTKIVTGADKVDSWSSTTWDGALLNVKVIITTPQVLLDALL---- 175 Query 117 EEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGAS 176 V ++ +L+V DE HH +K+ Y+ +M ++ + +P+P++LGLTASP Sbjct 176 HGFVNISSLALMVFDEAHHCNKNHAYSRVMKEFYWESKTKHEPVPRILGLTASPVVR--- 232 Query 177 KLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP---FGDLL 233 I+ + +L + LD C SP +L +SQ+P + + + Q F + L Sbjct 233 ---SDISSLKRLESTLDAVC-RSPTRHREELIANSQRPALFSIIYNPKLQPYAAGFSESL 288 Query 234 KKLMDQIH--DHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVY----------- 280 KLM + + LE P + ++ ++ KL +A ++E+R Y Sbjct 289 TKLMAARNKLNILEDPYVVS-LRAEISDRSRRKLEKA-----IKEKRTYVQDTMKSFCRR 342 Query 281 ----ALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKN 336 A L + I + +R L Y + +K+ L +F D Sbjct 343 SMEMAKELGAWAADWFISEAIRLF-----LAGIYRQGASSKSFRDAEVIFLARVFQDANI 397 Query 337 ELAH-LATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQT 395 E L TH + K++ + ++L R I F + R + L L + + Sbjct 398 EPPPPLTTHSGLSEKVQRIIEVLLNY---DKDARAICFVKERATTVVLSHILTTHPEVSS 454 Query 396 VDIRAQLLIGAGNSSQST----HMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN 451 R ++G + + + ++ F++G N+LVATSV EEG+D+P CN Sbjct 455 -KFRIGTMVGTSFVPGVKRDFLDLPETGGSQCLEAFREGRKNMLVATSVLEEGIDVPACN 513 Query 452 VVVRYGLLTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEAL-----ETLMEQA 506 +++ + N + +Q RGRAR QS + + L + E + Sbjct 514 LIICFDKPNNLRAFIQRRGRARMRQSHLYLFVEDEAEADWEALEAQMKLQYEDEKREHER 573 Query 507 VAAVQKMDQAEYQAKIR 523 + A++ + +Y ++R Sbjct 574 LEAIENSEALDYPEELR 590 >sp|A2Q8R2|MPH1_ASPNC ATP-dependent DNA helicase mph1 OS=Aspergillus niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) OX=425011 GN=mph1 PE=3 SV=2 Length=1124 Score = 368 bits (945), Expect = 1e-112, Method: Composition-based stats. Identities = 129/576 (22%), Positives = 223/576 (39%), Gaps = 58/576 (10%) Query 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQH 63 R YQ+ + L N+++ LPTG GKT AA + A++V + LV Q Sbjct 322 RDYQFNIAQKGL-FHNLLVALPTGLGKTFIAATIMLNWFRWTKDAQIVFVAPTKPLVAQQ 380 Query 64 GEE-FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 F R T L+G+ P + + T + L L + + Sbjct 381 ISACFEVAGIPRSQTTMLTGEAAP-GIRAEEWKAKRVFFMTPQTLINDL----KTGIADP 435 Query 123 TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG-- 180 L+VVDE H Y ++ L+R +VL LTA+PG+ S Sbjct 436 KRIVLVVVDEAHRATGGYAYVEVVKF-----LRRYNQSFRVLALTATPGSTVESVQAVID 490 Query 181 --AINHV-LQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLM 237 I+ V ++ +LD + ++ Q ++S++ LC LL +L Sbjct 491 GLDISRVEIRTEQSLDIREYVHSKDTDVQTFQNSEEMV----LCMDLMSKALQPLLDQLR 546 Query 238 DQIHDHLEMPELSRKFG-TQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDT 296 P +G T+ +Q ++ S A G++ + ++ Sbjct 547 STNAYWGRDPMGLTAYGLTKARQQWMLSDSGRNAHFGVKAKMNAIFT--------VLASL 598 Query 297 VRAVDALAA--LQDFY----HREHVTKTQILCAERRLLALFDDRKNELAHLA--THGPE- 347 +D L + FY H + T+ Q +R + + K + HL T PE Sbjct 599 AHGIDLLKYHGITPFYRHLLHFQSNTEGQKGGKYQRQVVQDESYKKLMNHLQPWTKNPEF 658 Query 348 --NPKLEMLEKILQRQF------------SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGL 393 +PKLE L++++ F + R +IF R SA + L++ + + Sbjct 659 IGHPKLEYLKQVVLNHFMDAGEGSGADENKDQPATRVMIFVHFRDSAEEVTRVLKRYEPM 718 Query 394 QTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV 453 IR + +G ++ S M Q+ Q +++QKF+ GT N +VATS+ EEGLDI +++ Sbjct 719 ----IRPHVFVGQSSAKGSEGMGQKTQLDIVQKFKKGTYNTIVATSIGEEGLDIGEVDLI 774 Query 454 VRYGLLTNEISMVQARGRARADQSV-YAFVATEGSRELKRELINEALETLMEQAVAAVQK 512 V Y + I M+Q GR +S + +G E + E + + + + Sbjct 775 VCYDSSASPIRMLQRMGRTGRKRSGKITLLLMQGKEEESYIKAKDNYEKMQQMIASGTRF 834 Query 513 MDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFP 548 + +I + + A EN + P Sbjct 835 TFHDDMSPRILPPGVRPVADKRAIDIPEENTVRDLP 870 >sp|Q2UNX5|DCL2_ASPOR Dicer-like protein 2 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=dcl2 PE=3 SV=1 Length=1377 Score = 372 bits (955), Expect = 1e-112, Method: Composition-based stats. Identities = 144/651 (22%), Positives = 237/651 (36%), Gaps = 97/651 (15%) Query 3 LRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETV-DGAKVVVLVNRVHLVT 61 R YQ+E+ +L+ +NII+ + TG GKT+ A LE L V L Sbjct 16 PRQYQYEMFEASLK-ENIIVAMDTGTGKTQIALLRIAHQLEGGGPRKLTWFLTPTVALCL 74 Query 62 QHGEEFRRMLDGRWTVTTLSGD----MGPRAGFGHLARCHDLLICTAELLQMALTSPEEE 117 Q E R L T D + + L + +++ T +L ALT Sbjct 75 QQYEVIRSHLPAVRACTITGLDKVERWKSQYIWDELLKDKQVVVSTHAVLFEALT----H 130 Query 118 EHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRA--QPLPQVLGLTASPGTGGA 175 V ++ L++ DE HH + N+IM + L++ +P +LGLTASP Sbjct 131 GFVRISQLGLLIFDEAHHCMRRHPANMIMLDFYHPTLRKHGRDSVPCILGLTASPVVRSK 190 Query 176 SKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKK 235 S+ + L +NLD+ C +PQ +L ++ +P +C + P G L+ Sbjct 191 SQ------EMKTLESNLDSIC-KTPQVHKQELTTYAHRPELLPIICKAIDEGPGGRALQA 243 Query 236 L------MDQIHDHLEMPELSRKF-GTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN 288 L D D +P+ G+ Y+ +V+ + + ++R+ Sbjct 244 LEHAWDTADIDGDPDAIPQNGSLLNGSGEYKALMVR------------KTLCNEQIKRFV 291 Query 289 DALLIHDTVRAVDALAA-LQDFYHREHVTKTQILCAERRLLALFDDRKNE-LAHLATHGP 346 D + L D+Y V + + ++ L ++D + L++ + P Sbjct 292 D-----RSRHIFAELGEWAADYYICTSVEQLRTTIRDQSLTMDWEDEERAYLSNFLSKLP 346 Query 347 E---------------NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQ 391 +PKL L L + G+IF + R + L L Sbjct 347 VAEVQANLADPNNFTMSPKLAALINFLDKF--DDPEFSGLIFVKQRVTVSVLARLLSLHP 404 Query 392 GLQTVDIRAQLLIGAGNSSQSTHM-----TQRDQQEVIQKFQDGTLNLLVATSVAEEGLD 446 + R +G S M + Q+ + F+ G NL+V TSV EEG+D Sbjct 405 QTR-DRFRCAAYVGMSVGSCRQDMVGDWHNAKKQRGTMDDFRSGRKNLIVTTSVLEEGID 463 Query 447 IPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQA 506 + C VVV + N S +Q RGRAR +S YA + + Sbjct 464 VTACRVVVCFDKPANLKSFIQRRGRARQQKSTYAIMFSTADEHGD--------------- 508 Query 507 VAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQLLCINCMVAVGHG 566 + Q ++QA +A + ++ L + AQ A EN + VE Sbjct 509 LRRWQILEQAMVEAYQDEERR--LREAEAQEAVDENVPEMITVE---------ATGAVIT 557 Query 567 SDLRKVEGTHHVNVNPNFSNYYNVSRDPVVINKVFKDWKPGGVISCRNCGE 617 D H V P Y +R K + G + +C Sbjct 558 PDSVVTHLYHFCAVLPE--ERYVDNRPEFSFEKDRQGL-IKGTVILPSCVH 605 >sp|Q0CWI2|MPH1_ASPTN ATP-dependent DNA helicase mph1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=mph1 PE=3 SV=2 Length=1100 Score = 366 bits (940), Expect = 3e-112, Method: Composition-based stats. Identities = 135/577 (23%), Positives = 226/577 (39%), Gaps = 60/577 (10%) Query 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQH 63 R YQ+ + L N+++ LPTG GKT AA + A++V + LV Q Sbjct 311 RDYQFNITQKGL-FHNLLVALPTGLGKTFIAATIMLNWFRWTRDAQIVFVAPTKPLVAQQ 369 Query 64 GEE-FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 F R T L+G+ P + + T + L L S + Sbjct 370 VSACFGVAGIPRSQTTMLTGEAAP-GIRAQEWQDKRVFFMTPQTLINDLKS----GIADP 424 Query 123 TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGAS---KLD 179 L+VVDE H Y ++ L+R +VL LTA+PG+ S +D Sbjct 425 KRIVLLVVDEAHRATGGYAYVEVVKF-----LRRYNQSFRVLALTATPGSTVESVQAVID 479 Query 180 GAI--NHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLM 237 G ++ +LD + +N Q ++S++ LC L+ +L Sbjct 480 GLEISKVEIRTEQSLDIREYVHARNTEVQTFKNSEEMV----LCMDLLSKTLQPLVDQLR 535 Query 238 DQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALL--IHD 295 P +G QQ + LS+ R + L+ +A+ + Sbjct 536 TLNAYWGRDPMALTAYGLTKSRQQWM-LSD--------AGRNSSFGLKGKVNAIFTVLAS 586 Query 296 TVRAVDALAA--LQDFY----HREHVTKTQILCAERRLLALFDDRKNELAHLA--THGPE 347 +D L + FY H + T Q +R + + K + HL+ T PE Sbjct 587 LAHGIDLLKYHGITPFYRHLLHFQGNTDGQKGGKYQRQIVQDEHFKKLMNHLSPWTKNPE 646 Query 348 ---NPKLEMLEKILQRQF------------SSSNSPRGIIFTRTRQSAHSLLLWLQQQQG 392 +PKLE L++++ F +S ++ R +IF R SA + L++ + Sbjct 647 FIGHPKLEYLKQVVLNHFMDAGEGSAGAEGASQSTTRVMIFVHFRDSAEEVARVLKRYEP 706 Query 393 LQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNV 452 + IR Q+ +G ++ S M Q+ Q V+QKF+ GT N +VATS+ EEGLDI ++ Sbjct 707 M----IRPQVFVGQASAKGSDGMNQKTQLGVVQKFKQGTYNTIVATSIGEEGLDIGEVDL 762 Query 453 VVRYGLLTNEISMVQARGRARADQSV-YAFVATEGSRELKRELINEALETLMEQAVAAVQ 511 +V Y + I M+Q GR ++ + EG E + E + + + + Sbjct 763 IVCYDSSASPIRMLQRMGRTGRKRAGNIVLLLMEGKEEESYIKAKDNYEKMQQMIASGTR 822 Query 512 KMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFP 548 + +I + + EN+ Q P Sbjct 823 FTFHDDKSPRILPPGVKPIVDKRHIDIPEENEEQALP 859 >sp|Q0UI93|DCL1_PHANO Dicer-like protein 1 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) OX=321614 GN=DCL1 PE=3 SV=2 Length=1522 Score = 364 bits (934), Expect = 4e-109, Method: Composition-based stats. Identities = 132/530 (25%), Positives = 216/530 (41%), Gaps = 67/530 (13%) Query 3 LRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLE--TVDGAK------VVVLV 54 R YQ E+ + A + +N I L TG GKT A + + LE + AK LV Sbjct 69 PRDYQMELFLRA-KMQNTIAVLDTGTGKTHIATLLLRHVLEEELENRAKGCAHKMAFFLV 127 Query 55 NRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGP----RAGFGHLARCHDLLICTAELLQMA 110 + V+LV Q R LD V +SG MG + + L + +++CTA++L Sbjct 128 DSVNLVFQQANVLRCGLDQ--GVEGISGAMGQSLFQKQTWDKLFAVNMVIVCTAQVLVDC 185 Query 111 LTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASP 170 + + ++ +L++ DE HH + Y +M Y +L + P++ +TASP Sbjct 186 MM----HSFMSISRMNLLIFDEAHHAKSNHPYARVMKDYYAHELDTS-KRPRIFAMTASP 240 Query 171 GTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFG 230 + +L L + + + + +P ++ + R ++ F Sbjct 241 VDVKGQSAEHVREAARELETLLHSRIATTSDSALA--RNSITRPEEEVA-VYTRLRNEFE 297 Query 231 DLLKKLMDQ------------IHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQR 278 L + + I L EL R + + MY ++ L ++E+ Sbjct 298 TPLHQKVKAKYGDVAPFRKLFITAKLHASELGR-WASDMYWSFAFADEQSRKL-QIREEL 355 Query 279 VYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNEL 338 Y R ++ A L R +A A +Q + Q L Sbjct 356 KYNRSKRDWSAAELDAQMARLKEATAFVQQYEIGAPTLSEQDL----------------- 398 Query 339 AHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI 398 + K+ L+ L + + R I+F R +A L L G ++ Sbjct 399 ---------SSKVMKLQYWLNLYYERTTLARCIVFVEKRHTAQLLKLIFDHIGG---PNL 446 Query 399 RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL 458 +L+G N + +++ R Q +QKF+ G LN L ATSVAEEGLDIP CN+VVR+ L Sbjct 447 HCDVLVGINNRAGEENVSLRSQILTLQKFRRGELNCLFATSVAEEGLDIPQCNLVVRFDL 506 Query 459 LTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEAL-ETLMEQAV 507 I VQ+RGRAR S Y + ++E L+N E +M + Sbjct 507 YRTMIGYVQSRGRARHRNSKYLHMLEAENKEHTERLMNARHDENIMREFC 556 >sp|A2R345|DCL21_ASPNC Dicer-like protein 2-1 OS=Aspergillus niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) OX=425011 GN=dcl2-1 PE=3 SV=2 Length=1387 Score = 362 bits (929), Expect = 6e-109, Method: Composition-based stats. Identities = 124/579 (21%), Positives = 220/579 (38%), Gaps = 64/579 (11%) Query 2 ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVT 61 RSYQ E+ +L+ +NII+ + TG+GKT A + LE+ + L V L Sbjct 18 RPRSYQVEMFEASLK-ENIIVTMGTGSGKTHIALLRIIKELESNPHKLIWFLTPTVALCL 76 Query 62 QHGEEFRRMLDGRWTVTTLSGD----MGPRAGFGHLARCHDLLICTAELLQMALTSPEEE 117 Q + + T S D + + + + +++ T +L A++ Sbjct 77 QQFKFLSDNIPAVRARTLTSLDKVELWTEQPVWDAILKEMQVVVSTHAVLADAMS----H 132 Query 118 EHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQR--AQPLPQVLGLTASPGTGGA 175 V++T L++ DE HH + N IM + L+R A+ +P++LGLTASP Sbjct 133 GFVKITQLGLMIFDEAHHCMRRHPANKIMQDFYHPALERHGAEAVPKILGLTASPVVRSN 192 Query 176 SKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKK 235 + +L++ +NLD C +P+ +L H+ +P Q L D K Sbjct 193 RQ------ELLKIESNLDAVC-KTPRTHRSELMTHTHRPHLQQILFTPVLLDDLQVGSKT 245 Query 236 LMDQIHDHLEMPELSRKFGTQMYEQQVVK--LSEAAALAGLQEQRVYAL-HLRRYNDALL 292 L + + + Y +++ K L A L+ + Y L+R+ Sbjct 246 LKALVSAWTSL-----RLEDDPYIKKLRKSPLDGRALQKVLESGKTYCNDQLKRFAT--- 297 Query 293 IHDTVRAVDALAA-LQDFYHREHVTKTQILCAERRLLALFDDRKNE-----LAHLATHG- 345 ++ + L D++ + + + + D + ++ L Sbjct 298 --RSLHIFEELGEWAADYFIHASIEQLKARAGNSADTMGWTDEEKAYLLDIVSKLPIPNI 355 Query 346 ----------PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQT 395 P + K L + L + G+IF + R + + L + Sbjct 356 DLTHSDPDRIPISSKFRSLLEFLDT--KGEPNFSGLIFAKQRATVSVMEKLLS-IHPVTK 412 Query 396 VDIRAQLLIGAGNSSQSTHMTQ----RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN 451 R +G + + R Q++ + +F+ G NL++AT V EEG+DI C+ Sbjct 413 HRFRCASFVGWSGGGSKDVLGELLDARMQRDTLSEFRTGQKNLIIATDVLEEGIDISACS 472 Query 452 VVVRYGLLTNEISMVQARGRARADQSVYAFVATEGSRELK----RELINEALETLMEQAV 507 VVV + N S VQ RGRAR QS YA + +L +E + Sbjct 473 VVVCFDKPPNLKSFVQRRGRARHRQSTYAIMFATDDESSALSKWEDLEQAMIEAYEDDER 532 Query 508 A-----AVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRE 541 A++ +++ + A LT A A Sbjct 533 RLREAWALEAINEEVVERLEVQSTGAVLTADTAVAHLNH 571 >sp|A4RHU9|DCL2_PYRO7 Dicer-like protein 2 OS=Pyricularia oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 GN=DCL2 PE=3 SV=3 Length=1485 Score = 362 bits (930), Expect = 1e-108, Method: Composition-based stats. Identities = 136/563 (24%), Positives = 230/563 (41%), Gaps = 63/563 (11%) Query 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG-AKVVVLVNRVHLVTQ 62 R+YQ E+ +++ +NII+ + TG+GKT+ A + LE +V L V L Q Sbjct 66 RAYQLEMFQASMQ-QNIIVSMDTGSGKTQVAVLRIRAELERTPPEKRVWFLAPTVALCAQ 124 Query 63 HGEEFRRMLDGRWTVTTLSGD----MGPRAGFGHLARCHDLLICTAELLQMALTSPEEEE 118 E R + ++ D + + +++CT +L AL+ Sbjct 125 QYEVIRSQIKVANSIVMTGDDNVDSWSDVQTWDAVLANVRVVVCTYMILFEALS----HA 180 Query 119 HVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKL 178 V + SL+V+DE H+ +IM ++ + +P +LGLTASP + Sbjct 181 FVTMDSISLLVMDEAHNCTGKFPGRLIMKRFYMPRKSAGDHVPHILGLTASPV------M 234 Query 179 DGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQP---CKQYNLCHRRSQDPFGDLLKK 235 ++ + L ++LD+ C P +L + QP Y C RS + + Sbjct 235 KSDLSSMEDLESSLDSVC-RGPTLQREELFANVHQPTMTVTTYKECDLRSPVQY----TR 289 Query 236 LMDQIHDHLEMPELSRK-----FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDA 290 M+ +H E +++ Q + + +L Q L+R + + Sbjct 290 NMNNLHLAFENLDIAEDPYVLHLMGQRTPKSLRELDRILTKLDTYTQNQ-MKALQRKSSS 348 Query 291 LLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG----- 345 L AVD+ Y V K L A L + D + H A G Sbjct 349 LFRELGQWAVDS-------YIYNVVEKVSNLDARSSWLGGWLDDEQRYLHRAIQGINALP 401 Query 346 -------PE--NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTV 396 PE + KL++L +IL+ SP GI+F + R +A L L + Sbjct 402 VSAAIPAPEMTSIKLQVLLRILRGY---EGSPVGIVFVKERATAGILSQLLAIIPDINA- 457 Query 397 DIRAQLLIGAG-----NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN 451 + ++G + + Q D ++KF+ G +NLLVATSV EEG+D+P CN Sbjct 458 RYKVGCMVGTSRYMSRKMNIHEVLQQGDDLLALEKFRSGAINLLVATSVLEEGIDVPVCN 517 Query 452 VVVRYGLLTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAA-V 510 +V+ + + N S +Q RGRAR +S + E S ++ ALE M+Q + Sbjct 518 LVICFDMPANLKSFIQRRGRARMRESKLHLMIEEDSLVSVKDW--GALEAAMKQRYENDM 575 Query 511 QKMDQAEYQAKIRDLQQAALTKR 533 +++D + ++ L R Sbjct 576 RELDHLAQVEEEDEMDVPPLHSR 598 >sp|Q5N870|DCL3A_ORYSJ Endoribonuclease Dicer homolog 3a OS=Oryza sativa subsp. japonica OX=39947 GN=DCL3A PE=2 SV=1 Length=1651 Score = 364 bits (933), Expect = 1e-108, Method: Composition-based stats. Identities = 119/521 (23%), Positives = 212/521 (41%), Gaps = 53/521 (10%) Query 1 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVD----GAKVVVLVNR 56 R YQ +V A+ +N I L TGAGKT A + K + G ++ L Sbjct 30 FTPRRYQLDVYEVAMR-RNTIAMLDTGAGKTMIAVMLIKEFGKINRTKNAGKVIIFLAPT 88 Query 57 VHLVTQHGEEFRRMLDGR----WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALT 112 V LVTQ E D + + GPR + + +++ T ++ AL Sbjct 89 VQLVTQQCEVIEIHTDFEVEQYYGAKGVDQWTGPR--WQEQISKYQVMVMTPQVFLQAL- 145 Query 113 SPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGT 172 + L + SL++ DECHH + Y IM ++ +++ P V G+TASP Sbjct 146 ---RNAFLILDMVSLMIFDECHHATGNHPYTRIMKEFYH----KSEHKPSVFGMTASPVI 198 Query 173 GGA-SKLDGAINHVLQLCANLDTWCI-MSPQNCCPQLQEHSQQPCKQYN---LCHRRSQD 227 S +L LD +S + +++ C+ Y+ +C + Sbjct 199 RKGISSHLDCEGQFCELENLLDAKIYTVSDREEIEFCVPSAKEMCRYYDSKPVCFEDLSE 258 Query 228 PFG-----------DLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQE 276 G +L K D D ++ + S++ ++ + L + + + Sbjct 259 ELGVLCSKYDALITELQNKRSDMYKDADDITKESKRRLSKSIAKICYCLDDVGLICASEA 318 Query 277 QRVYALHLRRYNDALLIHDTVRAVDA--------LAALQDFYHREHVTKTQILCAE--RR 326 ++ + R + + + V A D L A H + + L + ++ Sbjct 319 TKIC---IERGQEKGWLKEVVDATDQQTDANGSRLFAENSALHMKFFEEALHLIDKRLQQ 375 Query 327 LLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLW 386 + + + ++ A G +PKL L +I FS+S R +IF + +A + Sbjct 376 GIDMLLNSESGCVEAAKTGYISPKLYELIQIFH-SFSNSRHARCLIFVDRKITARVIDRM 434 Query 387 LQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLD 446 +++ L L G +S + +T + Q++ + F+ G +NLL T VAEEG+ Sbjct 435 IKKIGHLAH--FTVSFLTGGRSSVDA--LTPKMQKDTLDSFRSGKVNLLFTTDVAEEGIH 490 Query 447 IPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFVATEGS 487 +P C+ V+R+ L S VQ+RGRAR + S Y + G+ Sbjct 491 VPECSCVIRFDLPRTTRSYVQSRGRARQEDSQYILMIERGN 531 >sp|Q2H0G2|DCL1_CHAGB Dicer-like protein 1 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=DCL1 PE=3 SV=2 Length=1607 Score = 362 bits (928), Expect = 4e-108, Method: Composition-based stats. Identities = 142/602 (24%), Positives = 227/602 (38%), Gaps = 102/602 (17%) Query 2 ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETV--------DGAKVVVL 53 R YQ E+ A + +N I L TG+GKT AA + + ++ L Sbjct 134 SPRDYQLELFERA-KTQNTIAVLDTGSGKTLIAALLLRWTIQNELEDRSKRLPKRIAFFL 192 Query 54 VNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAG---FGHLARCHDLLICTAELLQMA 110 V++V LV Q LD + + GDM + + ++CTAE+L Sbjct 193 VDKVALVFQQHAVLACNLD--YPLEKFCGDMVEDVTQDFWHKTFDENMAIVCTAEILYQC 250 Query 111 LTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASP 170 LT ++ + +L+V DE HHT K+ Y I+ + + L +TASP Sbjct 251 LT----HSYIRMDQVNLLVFDEAHHTKKNHPYARIIKDFYAEVKDLNKRLRISRAMTASP 306 Query 171 GTG-------GASKLDGAINHVLQLCAN----------LDTWCIMSPQNCCPQLQEHSQQ 213 + +L+G ++ + A+ L + C P+ + + Sbjct 307 VDAQIDPKIARSPELEGLLHSQIATVADPTALHNSSTKLKREVTVEYGKCLPEFETGLNR 366 Query 214 PCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAG 273 K HR Q PF A+ L Sbjct 367 ALKDLVGEHRLFQKPFAFTATA--------------------------------ASELGP 394 Query 274 LQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD 333 R + L R L T R + R+ +I ++ Sbjct 395 WCADRYWQLFFRGEEVVKLEAKTEREI----------LRKSAYSQEIAAQVNKVREAHRL 444 Query 334 RKNELAHLATHGPENPKLEMLEKILQRQFSS-SNSPRGIIFTRTRQSAHSLLLWLQQQQG 392 + + K+ +L +IL+ +F + R I+F R R A L LQQ Sbjct 445 VGQHEFASPSSDLLSSKVVILLRILRGEFRGVDHKRRCIVFVRQRNVASLLTDLLQQ-PE 503 Query 393 LQTVDIRAQLLIGAGNSSQSTH---MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPH 449 ++ + +L+G G S +T RDQ I KF+ G LN + ATSVAEEGLDIP Sbjct 504 MRIPGLEPGILVGGGRPEASYDNAKVTYRDQVLTIIKFKKGELNCIFATSVAEEGLDIPD 563 Query 450 CNVVVRYGLLTNEISMVQARGRARADQSVYAFVATEGSRELKRELI-NEALETLMEQAVA 508 CNV++RY L I +Q+RGRAR + S+Y + + E +++ N+ E + + Sbjct 564 CNVIIRYDLNNTLIQYIQSRGRARQEGSIYIHMVESENEEHVKKVCQNQESEDALRKFCE 623 Query 509 AV--------QKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQLLCINCM 560 A+ D + K +D +Q + + A R N +Q L+C+ Sbjct 624 ALPADRKLTGNNFDMEYFLRKEKDQRQYTVPETGA----RLNYKQ-------SLICLAAF 672 Query 561 VA 562 VA Sbjct 673 VA 674 >sp|Q7XD96|DCL3B_ORYSJ Endoribonuclease Dicer homolog 3b OS=Oryza sativa subsp. japonica OX=39947 GN=DCL3B PE=3 SV=2 Length=1637 Score = 361 bits (925), Expect = 1e-107, Method: Composition-based stats. Identities = 132/558 (24%), Positives = 223/558 (40%), Gaps = 46/558 (8%) Query 3 LRSYQW-EVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETV-----DGAKVVVLVNR 56 R+ Q EV AL G N I L TG+GKT A +A+ H V VV L Sbjct 38 PRTSQLVEVFEAALRG-NTIAVLDTGSGKTMVAVMLAREHARRVRAGEAPRRIVVFLAPT 96 Query 57 VHLVTQHGEEFRRMLDGRWTV---TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTS 113 VHLV Q E R D + + G+ G + +++++ T ++L AL Sbjct 97 VHLVHQQFEVIREYTDLDVMMCSGASRVGEWGAD-HWKEEVGRNEIVVMTPQILLDAL-- 153 Query 114 PEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTG 173 + ++ SL++ DECH Y IM ++ +Q P V G+TASP Sbjct 154 --RHAFLTMSAVSLLIFDECHRACGSHPYARIMKEFY----FGSQWRPDVFGMTASPVAT 207 Query 174 G-ASKLDGAINHVLQLCANLDTWC-IMSPQNCCPQLQEHSQQPCKQYNLCH--------- 222 AS L H+ QL LD I+ +N + K Y+ Sbjct 208 KGASTLHNCEAHISQLELTLDAKIYIVEDRNELESFSPPTTIVNKYYDAYMVDFDNLKSK 267 Query 223 -RRSQDPFGDLLKKLMDQ----IHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQ 277 + D F LL L + D + E SRK ++ + + + L++ L + Sbjct 268 LQIFSDEFDSLLVGLQESPSNKFKDTDNILETSRKSLSRYHGKILYSLND---LGPIITS 324 Query 278 RVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNE 337 V +H+ D + + +L L Y +E ++ + + + + + +E Sbjct 325 EVVKIHIESVKPLCDSEDCIFSKASL-CLHMSYFKEALSLIEEILPQGYGELMKSESGSE 383 Query 338 LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD 397 L G + K+ L I + F SSN +IF +A ++ +++ Sbjct 384 E--LTKRGYISSKVNTLINIF-KSFGSSNEVLCLIFVDRIITAKAVERFMRGIVNFSCFS 440 Query 398 IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG 457 I L G S + ++ Q+ + F+ G +NLL T V EEG+D+P+C+ V+R+ Sbjct 441 IS--YLTGGSTSKDA--LSPAVQRFTLDLFRAGKVNLLFTTDVTEEGVDVPNCSCVIRFD 496 Query 458 LLTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAE 517 L S VQ+RGRAR + S + + G+ + + + + A + + Sbjct 497 LPRTVCSYVQSRGRARRNNSEFILMIERGNLQQQEHIFRMIQTGYYVKNCALYRHPNALS 556 Query 518 YQAKIRDLQQAALTKRAA 535 Y I+ + + A Sbjct 557 YDLSIQGMYTYQVQSTGA 574 >sp|Q7S8J7|DCL1_NEUCR Dicer-like protein 1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=dcl-1 PE=2 SV=1 Length=1584 Score = 356 bits (913), Expect = 4e-106, Method: Composition-based stats. Identities = 147/568 (26%), Positives = 243/568 (43%), Gaps = 73/568 (13%) Query 2 ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHL--------ETVDGAKVVVL 53 R YQ E+ A + +N I L TG+GKT AA + + + + + L Sbjct 121 SPREYQVELFERA-KQQNTIAVLDTGSGKTLIAAMLLRWVITGELEDREKGLPRRIAFFL 179 Query 54 VNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGP----RAGFGHLARCHDLLICTAELLQM 109 V++V LV Q + LD + + L G+M +A + +++++CTAE+L Sbjct 180 VDKVALVFQQHSFLTKNLD--FPMEKLCGEMVEGVESKAFWKEALEQNEVVVCTAEILST 237 Query 110 ALTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS 169 AL + + +L++ DE HHT KD Y I+ + ++ + P++LGLTAS Sbjct 238 AL----HHSWIRMDQINLLIFDEAHHTKKDHPYARIIKNFY--IDEQLERRPRILGLTAS 291 Query 170 PGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPF 229 P A L + + T LQ +P + + + R + Sbjct 292 PVDAKVDPRRAAAELEALLHSQIATA------ADPAALQHTICKPKTELVVEYVRGRPDS 345 Query 230 GDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND 289 +L K + ++ E+ + F T S A+ L R + L ++ + Sbjct 346 ETVLNKQLRKLVGGQELFKKPLNFTT----------SAASKLGTWCADRYWQLFFKQEDI 395 Query 290 ALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGP--- 346 L T R + +AAL + + HV + + +EL + T P Sbjct 396 VKLESRTERDLMKVAALDEITEK-HVKQVR--------------EAHELVNAHTFSPAAL 440 Query 347 ----ENPKLEMLEKILQRQFSSS-NSPRGIIFTRTRQSAHSLLLWLQQQQGLQT-VDIRA 400 + K+ ML +IL+ QF + R IIF R R +A L LQQ + I A Sbjct 441 DPTMLSSKVIMLVRILRDQFERGVGAQRCIIFVRQRNTAMLLADLLQQPEIKSHIPSIAA 500 Query 401 QLLIG---AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG 457 ++L+G G+S + + + Q +I+KF+ G +N L ATSVAEEGLDIP CN+V+R+ Sbjct 501 EVLVGGGTTGSSYVNAKINFQQQNRIIRKFKLGEINCLFATSVAEEGLDIPDCNIVIRFD 560 Query 458 LLTNEISMVQARGRARADQSVYAFVATEGSREL---------KRELINEALETLMEQAVA 508 L I +Q+RGRAR S Y + +G+ E +++ + E L E Sbjct 561 LYDTLIQCIQSRGRARRPDSRYIQMIEKGNYEHHSRILRAKGAEDVLRKFCEALPEDRKL 620 Query 509 AVQKMDQAEYQAKIRDLQQAALTKRAAQ 536 M+ K + +Q + A+ Sbjct 621 TGNHMNLDYLLRKEKGKRQYTVPDTGAK 648 >sp|Q0UL22|DCL2_PHANO Dicer-like protein 2 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) OX=321614 GN=DCL2 PE=3 SV=2 Length=1399 Score = 353 bits (906), Expect = 1e-105, Method: Composition-based stats. Identities = 130/574 (23%), Positives = 227/574 (40%), Gaps = 55/574 (10%) Query 1 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVV-VLVNRVHL 59 LRSYQ E++ +++ NII + TG+GKT A + LE K+V L V L Sbjct 9 FRLRSYQAEMVEESMQS-NIICVMDTGSGKTHIAIDRTRAELEICRPDKIVWFLAPTVTL 67 Query 60 VTQHGEEFRRMLDGRWTVTTLSGD-----MGPRAGFGHLARCHDLLICTAELLQMALTSP 114 Q F+ L G + + LSG + + + +++ T ++L AL+ Sbjct 68 CEQQFAVFKSNLPG-YGIQLLSGKDNLDHWTDQGVWDDVLLNIRIVLSTHQVLLDALS-- 124 Query 115 EEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGG 174 V++ SL++ DE HH + IMS + + ++ LP++LGL+ASP Sbjct 125 --HGFVKMRNLSLLIFDEAHHCSLKHPAHRIMSDFYKPRI--GTELPRILGLSASPIKTA 180 Query 175 ASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLK 234 + + Q+ NL + +P+ +L + +P QD ++L Sbjct 181 KVTSE----DLQQIERNLCAT-VKTPKLHRSELLRYVHRPHLMRIDYPVEPQDLQSNMLS 235 Query 235 KLMDQI--HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALL 292 L +D + P +S + V K + G R L +A+ Sbjct 236 FLKSAYTNYDLQKDPWVSELLQQRQQGHDVTKNIHKVFIGGKTYCRDQLRSLALKAEAMS 295 Query 293 IHDTVRAVD--ALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENP- 349 + +D + F H++ +Q+L + L + + + P Sbjct 296 QELGMSVMDWYLRGCITQFSKMVHMSDSQLLDWSADEKRHLLEILRTLPSIDLNSHDIPP 355 Query 350 --------KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQ 401 KL++L K L + ++F R + L + + +R Sbjct 356 MSLGSMSHKLQLLIKFLVAEAKHDPEFTCLVFVEQRVWVACIAEVLAIHPETRDL-LRVG 414 Query 402 LLIGAGNSSQSTHM-----TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY 456 +G +S+ R+QQ ++ F+ G LNL++ATSV EEG+D+ C++VV + Sbjct 415 TFVGESENSKRKANIASISEPRNQQATLENFRAGKLNLILATSVLEEGIDVSSCHLVVCF 474 Query 457 GLLTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQA 516 N S VQ RGRAR ++S Y + R + + Q +++ Sbjct 475 ESPKNLKSFVQRRGRARKEESKYVIFVPQAGR---------------RRDPESWQSLEEG 519 Query 517 EYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVE 550 A + DL+Q L Q Q E + F V+ Sbjct 520 MKAAYLDDLRQVKLATEKEQ--QSETGHRNFEVK 551 >sp|Q2VF19|DCL1_CRYPA Dicer-like protein 1 OS=Cryphonectria parasitica OX=5116 GN=DCL-1 PE=3 SV=1 Length=1548 Score = 354 bits (908), Expect = 2e-105, Method: Composition-based stats. Identities = 139/570 (24%), Positives = 227/570 (40%), Gaps = 72/570 (13%) Query 2 ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHL--ETVDGAK------VVVL 53 R YQ E+ A + +N I L TG+GKT AA + + E D AK L Sbjct 98 SPRDYQMELFERA-KQQNTIAVLDTGSGKTLIAALLLDHTVNQELEDRAKGLPRRIAFFL 156 Query 54 VNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAG----FGHLARCHDLLICTAELLQM 109 V +V L Q L +V SG+ + H++++CTAE+L Sbjct 157 VEKVALAFQQHAVLECNL--AHSVAVFSGESIKNTWTKGFWETQLADHEVIVCTAEILNQ 214 Query 110 ALTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS 169 L + ++ + +L+V DE HHT K+ Y I+ Y R LP++ G+TAS Sbjct 215 CL----QYAYIRIDQINLLVFDEAHHTKKNHPYARIIKDYYASGKDRGLRLPRIFGMTAS 270 Query 170 PGTG------GASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHR 223 P A +L+G ++ + A+ D L+ +P K+ + Sbjct 271 PVDALIDVRQAAIELEGLLHSRIATTADPDA------------LRRAVGRPKKEIIYKYN 318 Query 224 RSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALH 283 P +L + + + + Q + + A L R++ L Sbjct 319 PLVKPIQTMLTFKLRPLIANNK----------QFSKAFAFSEAAARELGTWFVDRMWQLF 368 Query 284 LRRYNDALLIHDTVRA--VDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHL 341 L L T R+ D A HR V + L R +E Sbjct 369 LEDEELLKLEAKTERSLSKDMAAPEVVEKHRNAVRSARELI-----------RSHEFPKP 417 Query 342 ATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQ 401 G + KL+ L K+L+ F+ S S R I+F R +A L + + + ++ Sbjct 418 E-PGLLSSKLKTLSKLLEEYFTDS-SIRCIVFVERRWTAKLLTDFF-ESHAAEIPGLKVG 474 Query 402 LLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN 461 L+GA S+ + R+Q I F+ G N + ATSVAEEGLDIP CN+++R+ + Sbjct 475 SLMGANAEGGSSQTSFREQIRTILSFKKGNTNCIFATSVAEEGLDIPDCNLIIRFDICKT 534 Query 462 EISMVQARGRARADQSVYAFVATEGSRELKRELI-NEALETLMEQAVAAV--------QK 512 I +Q+RGRAR S Y + G+ + +R + N E L+ + Sbjct 535 MIQYIQSRGRARQADSTYIHLIEGGNGDHRRIMHQNAENEKLLRRFCNTQPEDRLLKGSD 594 Query 513 MDQAEYQAKIRDLQQAALTKRAAQAAQREN 542 D + + R+ +Q + A+ + + Sbjct 595 YDMDFFLRQERNQRQYTIKSTGARLTYKNS 624 >sp|Q2HG76|MPH1_CHAGB ATP-dependent DNA helicase MPH1 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=MPH1 PE=3 SV=1 Length=1134 Score = 349 bits (894), Expect = 2e-105, Method: Composition-based stats. Identities = 130/671 (19%), Positives = 241/671 (36%), Gaps = 53/671 (8%) Query 2 ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVT 61 +R YQ+ ++ L N ++ LPTG GKT AA + + +K+V + L + Sbjct 186 AIRDYQFSIVKNGL-FHNTLVALPTGLGKTFIAATIMLNYFRWTKRSKIVFVAPTKPLAS 244 Query 62 QHGEEFRRM-LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 Q + + R T L+G+ P L T + L L+ + Sbjct 245 QQVQACLGIAGIPRSQATLLTGET-PPVLRQGEWESKRLFFMTPQTLMNDLSK----GYA 299 Query 121 ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLD- 179 + L+VVDE H D Y ++ ++R ++L LTA+PG+ D Sbjct 300 DPKSIVLLVVDEAHRATGDYAYVKVVEF-----IRRFSKSIRILALTATPGSTVEGVQDI 354 Query 180 ----GAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKK 235 G + ++ ++D + +N + + P + + L+ K Sbjct 355 IDNLGISHVEIRTEESIDIRQYVHSRN----IDTVTFDPSDEMHEVRGLFSKALKPLVDK 410 Query 236 LMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHD 295 L Q + P FG Q+ + A G++ + + + L+ Sbjct 411 LSAQNIYYGRDPMNLTTFGLLKSRQEWLAGPGGHANQGVKFMMMAVFSILQSLAHLIKLL 470 Query 296 TVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLAT-----HGPENPK 350 + + K +R L + + +A + +PK Sbjct 471 NFHGIKPFYNGLAEFRSSEEGKPGQGSKLKRQLLADESFQRMMALIERWMRMEEFNGHPK 530 Query 351 LEMLEKILQRQF---SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG 407 L L + L F +++ R I+F+ R SA ++ L Q IRA + +G Sbjct 531 LTYLCETLVNHFIDAGENSNTRAIVFSEYRDSAEEIVRLLNNQPL-----IRATVFVGQA 585 Query 408 NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 +S +S M Q+ Q E I+KF++G N+LVATS+ EEGLDI +++V Y + I M+Q Sbjct 586 DSKRSEGMKQKQQIETIEKFKNGGFNVLVATSIGEEGLDIGQVDLIVCYDASASPIRMLQ 645 Query 468 ARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQ 527 GR ++ + +E ++ L + M+Q + + DL Sbjct 646 RMGRTGRKRAGNIVLLLMKGKEEEKFLEAKDNYQKMQQLIC------NGDGFTFRHDLST 699 Query 528 AALTKRAAQAAQR-------ENQRQQFPVEHVQLLCINCMVAVGHGSDLRKVEGTHHVNV 580 + + + EN + E + ++ T VN+ Sbjct 700 RIVPRDIRPEVDKRHVDIPIENSQNTSLPEPKKTAAGLRKKVAKKKFNMPDDVETGFVNL 759 Query 581 NPNF----SNYYNVSRDPVVINKVFKDWKPGGVISCRNCGEVWGLQMIYKSV-KLPVLKV 635 +F + P + P + + + +YK++ K P KV Sbjct 760 KASFFGQPAERAANIPKPPAETDFLVEVPPLEKVLLSK-SQTERFERLYKTLPKTPFDKV 818 Query 636 RSMLLETPQGR 646 + + + Sbjct 819 QELGFDDINLG 829 >sp|Q9UT23|MPH1_SCHPO ATP-dependent DNA helicase fml1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=fml1 PE=1 SV=2 Length=834 Score = 342 bits (876), Expect = 3e-105, Method: Composition-based stats. Identities = 128/582 (22%), Positives = 233/582 (40%), Gaps = 65/582 (11%) Query 1 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV 60 + R YQ+ ++ AL +N+++ LPTG GKT AA V +L + +V + LV Sbjct 71 VSFRDYQFNIVQKAL-FENVLVALPTGLGKTFIAAVVMMNYLRWFPKSYIVFMAPTKPLV 129 Query 61 TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 TQ E ++ + T P + ++ T + + + + Sbjct 130 TQQMEACYKITGIPKSQTAELSGHVPVTTRNQYYQSRNVFFVTPQTILNDI----KHGIC 185 Query 121 ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG 180 + T S +V+DE H + + Y ++ L + ++L L+A+PG Sbjct 186 DRTRISCLVIDEAHRSTGNYAYVEVV-----HLLSLSNKNFRILALSATPGNK------- 233 Query 181 AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI 240 + + + +L I + ++ Q+ + D F L + I Sbjct 234 -LEAIQNVIDSLHISRIEIRTENSIDISQYVQK----------KEVDFFPVDLSAEITDI 282 Query 241 HDHLEM---PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTV 297 D P L + Y Q K + + +Q ++ + + A D + Sbjct 283 RDRFSSILEPMLQKLNKGNYYRIQNAK--DITSFTVVQAKQAFLAMSGQNFPANQKWDIL 340 Query 298 RAVDALA------------ALQDFYHREHVTKTQILCA----ERRLL------ALFDDRK 335 DALA ++ FY + + + ++R++ L DD + Sbjct 341 NTFDALATFAYPLNLLLNHGIRPFYQKLREVEEECFVGRSGYKKRIINHENYRPLMDDIE 400 Query 336 NELAHLATHGPENPKLEMLEKILQRQFSSS--NSPRGIIFTRTRQSAHSLLLWLQQQQGL 393 L + G +PKLE LE+I+ F R +IF R SA +L +L G Sbjct 401 ILLRDQSFVG--HPKLEHLERIVTEYFEKEQTKDTRIMIFVEIRSSAEEILRFL----GK 454 Query 394 QTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV 453 ++R + IG ++ M+Q+ Q E +++FQ G +N L+ATS+ EEGLDI +++ Sbjct 455 FYPNVRPAIFIGQSAVRKAAGMSQKLQNETVKQFQKGEVNTLIATSIGEEGLDIGEVDMI 514 Query 454 VRYGLLTNEISMVQARGRARADQSVYAFV-ATEGSRELKRELINEALETLMEQAVAAVQK 512 + Y + I M+Q GR + Y ++ T G E K E +A TL + V+ + Sbjct 515 ICYDASASPIRMLQRMGRTGRKRKGYIYMLLTRGKEEAKWERAKDAYRTLQDNIVSG-RG 573 Query 513 MDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQL 554 + +E +I + + + +EN+ + VQL Sbjct 574 LSLSEKSYRILPEKFRPVCDKRVIEIPKENEEVVVAPKKVQL 615 >sp|A4RN08|MPH1_PYRO7 ATP-dependent DNA helicase MPH1 OS=Pyricularia oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 GN=MPH1 PE=3 SV=1 Length=1102 Score = 346 bits (888), Expect = 1e-104, Method: Composition-based stats. Identities = 130/574 (23%), Positives = 226/574 (39%), Gaps = 57/574 (10%) Query 2 ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVT 61 +R YQ+ ++ L N ++ LPTG GKT AA V A++V + L + Sbjct 139 PIRDYQFSIVKNGL-FNNTLVALPTGLGKTFIAATVILNFFRWTRNAQMVFVAPTKPLAS 197 Query 62 QHGEEFRRM-LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 Q E + R T L+G+ P L T + L L+ + Sbjct 198 QQVEACLNIAGIPRSQSTLLTGETKP-VLREAEWEGKRLFFMTPQTLMNDLSK----GYA 252 Query 121 ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLD- 179 + L+VVDE H D Y ++ ++R +VL LTA+PG+ D Sbjct 253 DPKRIVLLVVDEAHRATGDYAYVKVIEF-----IRRFSKSFRVLALTATPGSTVEGVQDV 307 Query 180 ----GAINHVLQLCANLDT----------WCIMSPQNCCPQLQEHSQQPCK--QYNLCHR 223 G + ++ ++D ++ P + ++ E Q K + + Sbjct 308 IDNLGVSHVEIRTEESIDIRNYVHSREIDRVVLEPSDEMLRISELFSQALKPLHSKISQQ 367 Query 224 R---SQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVY 280 + +DP L+ D ++ P +F Q + ++ A+ + + + Sbjct 368 KIYIGRDPMSITTFGLLKARQDWMKGPG---RFANQGLKMMLM------AIFTILQSLAH 418 Query 281 ALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH 340 A+ L Y+ +D + A + +D + K Q L E+ + D L Sbjct 419 AIKLLNYHGIRPFYDNLVAFRS--ETEDKGQKGSKYKRQ-LIGEQSFQEMMDLASKWLKI 475 Query 341 LATHGPENPKLEMLEKILQRQF---SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD 397 G +PKL L L F +S R I+F+ R SA + L + + Sbjct 476 DGFAG--HPKLTHLCDNLLNYFMDAGEGSSTRVIVFSEYRDSAEEITRVLNVHKPM---- 529 Query 398 IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG 457 I A L +G +S +S M Q+ Q E I KF+DG N+LVATS+ EEGLDI ++++ Y Sbjct 530 ISASLFVGQADSKKSEGMKQKQQIETIAKFRDGIFNVLVATSIGEEGLDIGQVDLIICYD 589 Query 458 LLTNEISMVQARGRARADQSV-YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQA 516 ++ I M+Q GR ++ + +G E + E + + + + Sbjct 590 ASSSPIRMLQRMGRTGRKRAGKITLLLMKGKEEDNYAKAQDNYEKMQKLICEGSRFNFRH 649 Query 517 EYQAKI--RDLQQAALTKRAAQAAQRENQRQQFP 548 + ++I RD+ + + KR + Q P Sbjct 650 DLSSRIVPRDV-KPEVDKRMVEIPIENTQDTSLP 682 >sp|Q7SDF3|MPH1_NEUCR ATP-dependent DNA helicase mph1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=mph1 PE=3 SV=1 Length=1168 Score = 342 bits (877), Expect = 1e-102, Method: Composition-based stats. Identities = 113/569 (20%), Positives = 212/569 (37%), Gaps = 39/569 (7%) Query 2 ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVT 61 +R YQ+ ++ L N ++ LPTG GKT AA + ++ AK V + L + Sbjct 154 PIRDYQFSIVKNGL-FNNTLVALPTGLGKTFIAATIMLNYIRWTKTAKAVFVAPTKPLAS 212 Query 62 QHGEEFRRM-LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 Q + + R T L+G+ P L T + L L+ + Sbjct 213 QQVQACLSIAGIPRSQATLLTGET-PPVLREDEWATKRLFFMTPQTLMNDLSK----GYA 267 Query 121 ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLD- 179 + L+V+DE H D Y ++ L+R ++L LTA+PG+ D Sbjct 268 DPKSIVLLVIDEAHRATGDYAYVKVVEF-----LRRFSKSFRILALTATPGSSLEGVQDV 322 Query 180 ----GAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKK 235 G + ++ ++D + ++ + + P + L+ K Sbjct 323 IDNLGISHVEIRTEESIDIRQYVHSRD----INTITFDPSDEMMEVRDLFSKALKPLVTK 378 Query 236 LMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHD 295 L Q + P +G + G + + + + + Sbjct 379 LSSQNIYYGRDPMSLTTYGLMKARNDWMAGPGRHVNQGTKFSVIATFAILQSLAHSIKLL 438 Query 296 TVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPE-----NPK 350 + + K +R + ++ + + + +PK Sbjct 439 NFHGIKPFYNNLAEFRTTEEEKGGKGSKLKRQVLEDENFQKMMDMIEGWMKIDGFLGHPK 498 Query 351 LEMLEKILQRQF---SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG 407 LE L + L F ++ R I+F+ R SA ++ L +Q I+A + +G Sbjct 499 LEYLCETLVNHFMDAGEGSNTRAIVFSEYRDSAEEIVRILNKQPL-----IKATVFVGQA 553 Query 408 NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 +S +S M Q+ Q E I+KF++G N+LVATS+ EEGLDI +++V Y + I M+Q Sbjct 554 DSKRSEGMKQKQQIETIEKFKNGAHNVLVATSIGEEGLDIGQVDLIVCYDASASPIRMLQ 613 Query 468 ARGRARADQSV-YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKI--RD 524 GR ++ + +G E K + T+ + + + ++I RD Sbjct 614 RMGRTGRKRAGNIVLLLMKGKEEDKFNEAKDNYATMQRMICEGSRFTFRHDLSSRIVPRD 673 Query 525 LQQAALTKRAAQAAQRENQRQQFPVEHVQ 553 ++ ++ EN + E + Sbjct 674 IRPEV--EKKVVEIPLENSQNPELPEPKR 700 >sp|Q6BRF0|MPH1_DEBHA ATP-dependent DNA helicase MPH1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=MPH1 PE=3 SV=2 Length=1105 Score = 336 bits (862), Expect = 5e-101, Method: Composition-based stats. Identities = 114/573 (20%), Positives = 208/573 (36%), Gaps = 91/573 (16%) Query 1 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV 60 E+R YQ+ ++ A N+++ LPTG GKT A+ V K++ + LV Sbjct 85 FEVRDYQFNIVQRAFYD-NLLVALPTGLGKTFIASTVMLNFTRWFPRGKIIFMAPTKPLV 143 Query 61 TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 Q + + + + D R + + T ++++ LT+ + Sbjct 144 AQQIKACCGITGIPTSEVAILLDKS-RRNRADIWDSKTVFFTTPQVVENDLTA----GII 198 Query 121 ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG 180 + L+V+DE H + + YN ++ + R ++L LTA+P + Sbjct 199 DPKEVVLLVIDEAHKSKGNYAYNNVVKF-----ITRFNISFRILALTATPAS-------- 245 Query 181 AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI 240 + V ++ NL + + ++ +Q K+ +L+ L I Sbjct 246 DVEGVQEIIDNLSISKVEVRTEQSIDITKYMKQ--KKIERVTVSPSVEICELVDMLCTAI 303 Query 241 HDHLEMPELSRKF---------GTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDAL 291 L M R + Q+ + L GL+ Q + L + Sbjct 304 QPVLSMANERRIYDMSDPSKINAFQVIDASQRLLKNPTIPEGLKWQNYFILQILNVVGQA 363 Query 292 LIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALF----------DDRKNELAHL 341 L + + + D H+E K + + + A F D K +A Sbjct 364 LRRLNIYGIKSFYNYFDQKHKEFTIKFKNKKSNNQTAARFYFHDNIKLILDKCKELIADD 423 Query 342 ATHGPENPKLEMLEKILQRQFSSS--NSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIR 399 G +PKLE+L L F + N R IIFT R+SA ++ +++ ++R Sbjct 424 NFLG--HPKLEILINELDEFFKENEANDSRVIIFTEFRESALDIVSSIERIGS----NLR 477 Query 400 AQLLIGAGNS-------------------------------------------SQSTHMT 416 + IG +Q M Sbjct 478 PHIFIGQSKEKEKFDEEAYLSKGKKGRTKGKATKGKQNSETPERSTSRTSSEDAQIKGMN 537 Query 417 QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQ 476 Q+ Q+++I+KF+ G N+LVATS+ EEGLDI +++V Y ++ I +Q GR + Sbjct 538 QKLQKDLIKKFKKGEYNILVATSIGEEGLDIGEVDLIVCYDSTSSPIKNIQRMGRTGRKR 597 Query 477 SVYAFVATEGSRELKRELINEALETLMEQAVAA 509 + G+ E K + E + + + Sbjct 598 DGKVLLLFAGNEESKFDKAMAGYEFIQQHIMNG 630 >sp|A4RKC3|DCL1_PYRO7 Dicer-like protein 1 OS=Pyricularia oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 GN=DCL1 PE=3 SV=2 Length=1591 Score = 342 bits (876), Expect = 6e-101, Method: Composition-based stats. Identities = 143/553 (26%), Positives = 238/553 (43%), Gaps = 61/553 (11%) Query 3 LRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK--------VVVLV 54 R YQ E+ A + KN I L TG GKT A + + +E GA+ LV Sbjct 108 PREYQIELFERA-KQKNTIAVLDTGTGKTLIAILLIRHIIELELGARWQGREKRITFFLV 166 Query 55 NRVHLVTQHGEEFRRMLDGRWTVTTLSGD-----MGPRAGFGHLARCHDLLICTAELLQM 109 ++V LV Q + R LD + VT L GD + F L + ++++CTAE+L Sbjct 167 DKVALVRQQTDHIRANLD--FPVTGLHGDTVRNLWYSKEYFEKLLQEQEVVVCTAEILYR 224 Query 110 ALTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS 169 L ++ ++ SL+V DE HH K+ VY I+ + L + Q P++ G+TAS Sbjct 225 CL----HRSYLNISQVSLVVFDEAHHAKKNHVYARIIKDFY-LMEEDCQKRPRIFGMTAS 279 Query 170 PGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHS-QQPCKQYNLCHRRSQDP 228 P D I++ L + +P + + Sbjct 280 PIDTK----DTCISYERATHELESLLHSEIATISDRDLLKVIGSRPQE--------VRKS 327 Query 229 FGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN 288 + +L++ ++ + L + Q ++ ++E L +++ L R Sbjct 328 YARVLRQENTELCNQLRELVGNHPLFKQTFDSAEFAVTE---LGAWCADKLWELCFREEA 384 Query 289 DALL--IHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGP 346 + L + RA D + + H + + ++ + +D G Sbjct 385 VSTLDGRVEGSRARDP-DEVGESSHEVSNAREALSLVQQWSFSPPED-----------GS 432 Query 347 ENPKLEMLEKILQRQFSSS---NSPRGIIFTRTRQSAHSLLLWLQQQQGLQT--VDIRAQ 401 + K L +IL FS + N+ + I+F + R +A LL L +Q ++T D++ Sbjct 433 LSTKTHKLIEILAECFSQASAGNAIQCIVFVKRRDTA-VLLNALCEQAEIRTKIPDLKGA 491 Query 402 LLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN 461 LIGAG + T R Q++ + +F+DG +N L ATS+AEEGLDIP CNVV+R+ L Sbjct 492 FLIGAGRGGNAAFTTTRQQEQTVSRFRDGEINCLFATSIAEEGLDIPGCNVVIRFDLHGT 551 Query 462 EISMVQARGRARADQSVYAFVATEGSRELKRELINE-ALETLMEQAVAAVQK---MDQAE 517 I +Q+RGRAR S + + G+ E R + E M ++ K M++AE Sbjct 552 TIQYIQSRGRARMRNSWFIHMTEFGNPEHNRRWFQDRVNEQKMRDFCLSLPKDRIMEKAE 611 Query 518 YQAKIRDLQQAAL 530 +R Q + Sbjct 612 VDDVLRGDQSQKI 624 >sp|Q1DY43|MPH1_COCIM ATP-dependent DNA helicase MPH1 OS=Coccidioides immitis (strain RS) OX=246410 GN=MPH1 PE=3 SV=1 Length=1110 Score = 335 bits (859), Expect = 1e-100, Method: Composition-based stats. Identities = 128/580 (22%), Positives = 221/580 (38%), Gaps = 59/580 (10%) Query 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQH 63 R YQ+ + AL N+++ LPTG GKT AA V A++V + LV+Q Sbjct 325 REYQFNIAHRAL-FHNLLVALPTGLGKTFIAATVMLNWFHWTKDAQIVFVAPTKPLVSQQ 383 Query 64 GEE-FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 + F R T L+G+ P R + T + + L + + Sbjct 384 VDACFHIAGIPRSQTTLLTGNT-PPGVRAEEWRSKRVFFMTPQTIMNDL----KTGIADP 438 Query 123 TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLD--- 179 L+VVDE H Y I+ LQR +VL LTA+PG + + Sbjct 439 KRIVLLVVDEAHRATGAYAYVEIVKF-----LQRFNNSFRVLALTATPGATVEAVQEVID 493 Query 180 --GAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLM 237 ++ +LD + +N E+S+ L + Q ++ +L Sbjct 494 GLSISRIEIRTEKSLDIRGFVHQRNVETITFENSRDMITSMELFAKALQP----VVDRLR 549 Query 238 DQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTV 297 +Q P FG Q+ S A A + ++ Sbjct 550 NQNAYWGRDPMALTPFGLTKARQEWNS-SPAGRAASWPVKGTINSMFT------VLASLA 602 Query 298 RAVDALAA--LQDFY-----HREHVTKTQILCAERRLLALFDDRKNELAHL-ATHGPE-- 347 A+D L + FY + V K + + + K ++ L + E Sbjct 603 HAIDLLKYHGIGPFYRNLVSFEDSVLKEKKGGKCASQIVADGNFKVLMSKLRSWTNTEEF 662 Query 348 --NPKLEMLEKILQRQF------------SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGL 393 +PKLE L + + F S ++ R +IF+ R SA ++ L++ Q Sbjct 663 IGHPKLEYLRRAILNHFLDAGGKNGGDSEGSDSNTRVMIFSHFRDSAEEIVRVLRKHQPF 722 Query 394 QTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV 453 +R + +G N+ S M Q+ Q EV+ KF+ GT N +VATS+ EEGLDI +++ Sbjct 723 ----VRPHVFVGQANAKGSEGMDQKTQLEVVGKFKTGTYNTIVATSIGEEGLDIGEVDLI 778 Query 454 VRYGLLTNEISMVQARGRARADQSV-YAFVATEGSRELKRELINEALETLMEQAVAAVQK 512 + Y ++ I M+Q GR ++ + ++G E ++ E + + + + Sbjct 779 ICYDGHSSPIRMLQRMGRTGRKRAGNIILLLSKGKEEESYSKAKDSYEKMQQLIASGSRF 838 Query 513 MDQAEYQAKI--RDLQQAALTKRAAQAAQRENQRQQFPVE 550 + ++I +D+Q A K + P + Sbjct 839 TFHTDKSSRIVPQDIQPEAEEKMIEIPIENSQLGLPEPAK 878 >sp|A6RIS1|MPH1_BOTFB ATP-dependent DNA helicase MPH1 OS=Botryotinia fuckeliana (strain B05.10) OX=332648 GN=mph1 PE=3 SV=2 Length=1229 Score = 335 bits (858), Expect = 1e-99, Method: Composition-based stats. Identities = 117/578 (20%), Positives = 218/578 (38%), Gaps = 61/578 (11%) Query 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQH 63 R YQ+ ++ L N+++ LPTG GKT AA + +++V + LV+Q Sbjct 272 RRYQYTIVHKGL-FNNLLVALPTGLGKTFIAATIMLNFFRWTKNSQIVFMAPTKPLVSQQ 330 Query 64 GEE-FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 + F R + T L+GD P A + T + ++ L + + Sbjct 331 VKACFEIAGIPRSSTTMLTGDQTP-ALRAEEWDEKRVFFMTPQTVENDL----KTGIADP 385 Query 123 TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAI 182 +L+VVDE H Y ++ L+R +VL LTA+PG+ + Sbjct 386 KRIALLVVDEAHRATGKYAYTKVVEF-----LRRFNKSFRVLALTATPGST--------V 432 Query 183 NHVLQLCANLDTWCIMSPQNCCPQLQEHSQQ---------PCKQYNLCHRRSQDPFGDLL 233 V ++ NL+ + ++E+ + P + + L+ Sbjct 433 EAVQEVIDNLEIAEVEIRTEESIDIKEYVHRRDITEILIDPSDEIIMVRDLFSKALQPLV 492 Query 234 KKLMDQIHDHLEMPELSRKFGTQMYEQ-QVVKLSEAAALAGLQEQRVYALHLRRYNDALL 292 L Q + + P +FG + + + +A G++ + + Sbjct 493 NLLCSQKAYYNKDPMSLTQFGMLTARKTWMASGAGKSANMGVKGMMNALFTVLTSMGHAI 552 Query 293 IHDTVRAVDA-LAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHL-ATHGPE--- 347 + + ++DF R V + + + D K + + + E Sbjct 553 KILNFHGIGPFFSNIKDF--RAEVEGNKKGGKYKNQVVNDPDFKKMMDRIQSWINKEEFI 610 Query 348 -NPKLEMLEKILQRQFSSS-----------NSPRGIIFTRTRQSAHSLLLWLQQQQGLQT 395 +PKL L + F + +S R I+FT R SA + L + + Sbjct 611 GHPKLTHLCDTVLNHFLDAGAGLTGDNMPPSSTRVIVFTEYRDSAEDIARVLNKHGPM-- 668 Query 396 VDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVR 455 I+A + +G +S +S M Q Q E I+KF+ G +N++VATS+ EEGLDI +++V Sbjct 669 --IKASVFVGQSDSKRSEGMNQEKQLETIRKFKAGGINVIVATSIGEEGLDIGEVDLIVC 726 Query 456 YGLLTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQ 515 Y ++ I M+Q GR ++ + L R ++ + + + + Sbjct 727 YDSSSSPIRMLQRMGRTGRKRAGKIVLL------LMRGKEEDSYKKSKDNYEQMQRMISS 780 Query 516 AEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQ 553 DL + + E + + P E+ Q Sbjct 781 GSRFTFRHDLSARIIPRDVKPEV--EKRFIEIPPENTQ 816 >sp|Q8BGE5|FANCM_MOUSE Fanconi anemia group M protein homolog OS=Mus musculus OX=10090 GN=Fancm PE=1 SV=3 Length=2021 Score = 339 bits (868), Expect = 1e-99, Method: Composition-based stats. Identities = 119/560 (21%), Positives = 215/560 (38%), Gaps = 82/560 (15%) Query 2 ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVT 61 +R YQ ++ AL N ++ LPTG GKT AA V KVV + LVT Sbjct 78 PVRDYQLDISRSAL-FCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVVFMAPTKPLVT 136 Query 62 QHGEE-FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 Q E F M + + ++G + +L T +++ LT V Sbjct 137 QQMEACFHVMGIPQSHMAEMTGSTQA-VNRKEIWSSRRVLFLTPQVMVNDLT----RGAV 191 Query 121 ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG 180 T +VVDE H + Y ++ + ++ ++L L+A+PG+ Sbjct 192 PATHVKCLVVDEAHKALGNYAYCQVVRELVKYTTH-----FRILALSATPGS-------- 238 Query 181 AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI 240 I V Q+ NL I P + +S + + + P G+ L + Sbjct 239 DIKAVQQVITNLLIGKIELRSEESPDILPYSHERRVE------KLVVPLGEELGAIQKTY 292 Query 241 HDHLEMP---------------ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRV---YAL 282 LE K+ + Q K + + + G+Q+ + +AL Sbjct 293 IQILETFASSLIHRNVLMKRDIPNLTKYQIILARDQFRK-NPSPNIVGIQQGIIEGEFAL 351 Query 283 HLRRYNDALLIHD-------------------TVRAVDALAALQDFYHREHVTKTQILCA 323 + Y+ L+ RA + L+ +DF ++ A Sbjct 352 CISLYHGYELLQQMGMRSLYFFLSGIMDGTKGMTRARNELSRNEDFMKLYTHLQSAFAPA 411 Query 324 ERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSN----------SPRGIIF 373 + F E + +H PKL+ LE+++ F S N R +IF Sbjct 412 STSDASAFQRGNKEKKFVYSH----PKLKKLEEVILEHFKSWNAKATTEKKCHESRVMIF 467 Query 374 TRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN 433 + R S + L Q + + IR +G + + TQ++Q +V+++F+DG N Sbjct 468 SSFRDSVEEIAEMLLQHRPV----IRVMTFVGHASGKNTKGFTQKEQLQVVRQFRDGGYN 523 Query 434 LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFVATEGSRELKRE 493 LV+T V EEGLDI ++++ + + I ++Q GR + V RE + Sbjct 524 TLVSTCVGEEGLDIGEVDLIICFDAQKSPIRLIQRMGRTGRKRQGRIVVILAEGREERTY 583 Query 494 LINEALETLMEQAVAAVQKM 513 +++ + + +A++ +++ Sbjct 584 NQSQSNKKNIYKAISGNRQV 603 >sp|Q9SP32|DCL1_ARATH Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana OX=3702 GN=DCL1 PE=1 SV=2 Length=1909 Score = 337 bits (865), Expect = 3e-99, Method: Composition-based stats. Identities = 141/576 (24%), Positives = 227/576 (39%), Gaps = 88/576 (15%) Query 2 ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAK----RHLETVDGAKVVVLVNRV 57 + R YQ +V+ A + KN I +L TGAGKT A + K + V LV +V Sbjct 248 QARRYQLDVLEQA-KAKNTIAFLETGAGKTLIAILLIKSVHKDLMSQNRKMLSVFLVPKV 306 Query 58 HLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAG----FGHLARCHDLLICTAELLQMALTS 113 LV Q E R + V G+MG + +L+ TA++L L Sbjct 307 PLVYQQAEVIRNQT--CFQVGHYCGEMGQDFWDSRRWQREFESKQVLVMTAQILLNIL-- 362 Query 114 PEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGT- 172 + + L+++DECHH K Y+++MS++ + P + G+TASP Sbjct 363 --RHSIIRMETIDLLILDECHHAVKKHPYSLVMSEFYHTTPK--DKRPAIFGMTASPVNL 418 Query 173 -GGASKLDGAINHVLQLCANLD-TWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFG 230 G +S++D AI + L LD T C + + +L++H P + + ++ + Sbjct 419 KGVSSQVDCAIK-IRNLETKLDSTVCTIKDRK---ELEKHVPMPSEIVV-EYDKAATMWS 473 Query 231 --DLLKKLMDQIHDHLEMPELSRKF--------GTQMYEQQVVKLSEA------------ 268 + +K+++ + + + K+ G + +QV +SE Sbjct 474 LHETIKQMIAAVEEAAQASSRKSKWQFMGARDAGAKDELRQVYGVSERTESDGAANLIHK 533 Query 269 --------AALAGLQEQRVYALHLRRY---------NDALLIHDTVRAVDALAALQDFYH 311 A L +V L D + V +L + Sbjct 534 LRAINYTLAELGQWCAYKVGQSFLSALQSDERVNFQVDVKFQESYLSEVVSLLQCELLEG 593 Query 312 REHVTKTQILCAERRLLALFDDRKNELAHLAT----------------HGPENPKLEMLE 355 + A + + EL G PK++ L Sbjct 594 AAAEKVAAEVGKPENGNAHDEMEEGELPDDPVVSGGEHVDEVIGAAVADGKVTPKVQSLI 653 Query 356 KILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHM 415 K+L + + + R I+F +A L + L IR +IG N S M Sbjct 654 KLLLK-YQHTADFRAIVFVERVVAALVLPKVFAELPSLSF--IRCASMIGHNN---SQEM 707 Query 416 TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARAD 475 Q+ I KF+DG + LLVATSVAEEGLDI CNVV+R+ L ++ +Q+RGRAR Sbjct 708 KSSQMQDTISKFRDGHVTLLVATSVAEEGLDIRQCNVVMRFDLAKTVLAYIQSRGRARKP 767 Query 476 QSVYAFVATEGSRELKRELIN--EALETLMEQAVAA 509 S Y + G+ L N + ETL ++A+ Sbjct 768 GSDYILMVERGNVSHAAFLRNARNSEETLRKEAIER 803 >sp|A7LFZ6|DCL4_ORYSJ Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp. japonica OX=39947 GN=DCL4 PE=2 SV=1 Length=1657 Score = 337 bits (863), Expect = 4e-99, Method: Composition-based stats. Identities = 125/563 (22%), Positives = 215/563 (38%), Gaps = 78/563 (14%) Query 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKR--HLETVDGAKV-VVLVNRVHLV 60 R YQ ++ A+E +NII++L TG GKT A + HL +V + L + LV Sbjct 31 RKYQLDLCKRAVE-ENIIVYLGTGCGKTHIAVLLIYELGHLIRKPSREVCIFLAPTIPLV 89 Query 61 TQHGEEFRRMLDGRWTVTTLSGDMG-PRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 Q D + +G + + R ++L+ T ++L +L Sbjct 90 RQQAVVIASSTDFKVQCYYGNGKNSRDHQEWENDMREFEVLVMTPQILLQSL----RHCF 145 Query 120 VELTVFSLIVVDECHHTH--KDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGA-- 175 +++ +L+++DECHH K Y IM ++ + P+V G+TASP G Sbjct 146 IKMNSIALLILDECHHAQPQKRHPYAQIMKEFYNSN--SVEKFPRVFGMTASPIIGKGVM 203 Query 176 -------------------------SKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEH 210 S + L L +L+ Sbjct 204 PSHSFTEKGGRSPCQPLIFFLPKGGSNKLNYTKCINSLEELLHAKVCSVDNE---ELESV 260 Query 211 SQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDH-----------LEMPELSRKFGTQMYE 259 P + + + K +D + + + K +++E Sbjct 261 VASPDMEVYFYGPVNHSNLTTICIKELDSLKLQSERMLRASLCDFKDSQKKLKSLWRLHE 320 Query 260 QQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQ 319 + L E + LQ R + D R VD + F H T Sbjct 321 NIIFCLQELGSFGALQAARTFLSFDGDKLD-------RREVDLNGSTSSFAHHYLNGATS 373 Query 320 ILCAER---RLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRT 376 IL + FD K E + K +L +L R + + + I+F + Sbjct 374 ILSRNKTDGSHAGSFDLEKLEEPFFSN------KFSVLINVLSR-YGLQENMKCIVFVKR 426 Query 377 RQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLV 436 A ++ LQ + L+ + + L+G S S +M++ ++Q+F G +NLLV Sbjct 427 ITVARAISNILQNLKCLEF--WKCEFLVGC--HSGSKNMSRNKMDAIVQRFSSGEVNLLV 482 Query 437 ATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFVATEGSRELKRELIN 496 ATSV EEGLDI C +VVR+ L S +Q+RGRAR +S Y + ++ ++ L+N Sbjct 483 ATSVGEEGLDIQTCCLVVRFDLPETVASFIQSRGRARMTKSKYVVLLERENQSHEK-LLN 541 Query 497 EAL--ETLMEQAVAAVQKMDQAE 517 + E++M + + + D + Sbjct 542 GYIAGESIMNEEIDSRTSNDMFD 564 >sp|Q5A1A0|MPH1_CANAL ATP-dependent DNA helicase MPH1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=MPH1 PE=3 SV=2 Length=1187 Score = 332 bits (850), Expect = 7e-99, Method: Composition-based stats. Identities = 112/561 (20%), Positives = 215/561 (38%), Gaps = 77/561 (14%) Query 1 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV 60 E+R YQ+ ++ A N+++ LPTG GKT A+ V L +K++ + LV Sbjct 135 FEIRDYQYNIVERAFYD-NLLVALPTGLGKTFIASTVMLNFLRWFPISKIIFMAPTRPLV 193 Query 61 TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 Q + + + + D R + + T ++++ L S V Sbjct 194 AQQIKACCSIAGIPSSKVAILLDKT-RRNRAEIWNSRQVFFTTPQVVENDLAS----GVV 248 Query 121 ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG 180 +L+V+DE H + YN ++ + R ++L LTA+P + Sbjct 249 NPKSIALLVIDEAHRAKGNYSYNNVVKF-----INRFSDSYRILALTATPAS-------- 295 Query 181 AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQ-----DPFGDLLKK 235 + V Q+ NL+ + + H ++ + C+ S+ + + + Sbjct 296 DVEGVQQIIDNLNISKVEVRTEQSIDIVRHMKRKTVERKTCYPSSEITECIELLAEGITP 355 Query 236 LMDQIH--DHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLI 293 +++ L++ + +R Q E ++ GL+ + L L Sbjct 356 VLNTAKERGLLDLTDPTRINFLQCMEISRKIVANPTIPEGLKWSNYFILQLLGMVGQCYR 415 Query 294 HDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALF---------DDRKNELAHLATH 344 + + + + + E TK + +L A F DR EL+ T+ Sbjct 416 RLNIYGIRSFQSYFNEKFLEFKTKWNAKKSTNKLNADFYFSDPITTLMDRVEELSKTLTY 475 Query 345 GPENPKLEMLEKILQRQF--SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL 402 G +PK+E L + L F + R IIFT R+SA ++ +++ + + + Sbjct 476 G--HPKIEALMEELDDFFKNHETAGSRVIIFTEFRESALEIVQCIEK----ANDNRKPHI 529 Query 403 LIGAG----------------------------------NSSQSTHMTQRDQQEVIQKFQ 428 IG ++Q T M+Q+ Q+E+I+KF+ Sbjct 530 FIGQSKEKEKFDVENFGKKKQKGQTKKKKDERPSTRSSSENAQMTGMSQKLQKEIIKKFK 589 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFVATEGSR 488 G N+LVATS+ EEGLDI ++++ Y ++ I +Q GR + + + Sbjct 590 KGVFNILVATSIGEEGLDIGEVDLIICYDSTSSPIKNIQRMGRTGRKRDGKVLMLFSSNE 649 Query 489 ELKRELINEALETLMEQAVAA 509 E K + E + + + Sbjct 650 ESKFDKAMGGYEYIQQHIMKG 670 >sp|A7EFH4|MPH1_SCLS1 ATP-dependent DNA helicase mph1 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 GN=mph1 PE=3 SV=1 Length=1235 Score = 331 bits (849), Expect = 2e-98, Method: Composition-based stats. Identities = 115/578 (20%), Positives = 219/578 (38%), Gaps = 61/578 (11%) Query 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQH 63 R YQ+ ++ L N+++ LPTG GKT AA + +++V + LV+Q Sbjct 266 RRYQYTIVHKGL-FNNLLVALPTGLGKTFIAATIMLNFFRWTTDSQIVFMAPTKPLVSQQ 324 Query 64 GEE-FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 + F R + T L+GD P A + T + ++ L + + Sbjct 325 VKACFEIAGIPRSSTTMLTGDQSP-ALRAEEWAEKRVFFMTPQTVENDL----KTGIADP 379 Query 123 TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAI 182 +LIVVDE H + Y ++ L+R +VL LTA+PG+ + Sbjct 380 KKIALIVVDEAHRATGNYAYTKVVQF-----LRRFNESFRVLALTATPGSS--------V 426 Query 183 NHVLQLCANLDTWCIMSPQNCCPQLQEHSQQ---------PCKQYNLCHRRSQDPFGDLL 233 V ++ NL+ + ++E+ + P + + L+ Sbjct 427 EAVQEVIDNLEIAEVEIRTEDSIDIKEYVHRRDITEILIDPSDEIIMIRELFSKALQPLV 486 Query 234 KKLMDQIHDHLEMPELSRKFG-TQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALL 292 L Q + + P ++G + + + +A ++ + + Sbjct 487 NLLCSQKAYYNKDPMGLTQYGMLTARKAWMASGAGKSAQMSIKGMMNALFTVLTSMGHAI 546 Query 293 IHDTVRAVDA-LAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLA-THGPE--- 347 + + ++DF R V + + + + K + + E Sbjct 547 KLLNFHGIGPFFSNIKDF--RAEVEGNKKGGKYKNQIVNSPEFKKMMERIQGWINKEDFI 604 Query 348 -NPKLEMLEKILQRQFSSS-----------NSPRGIIFTRTRQSAHSLLLWLQQQQGLQT 395 +PKL L + F + +S R I+FT R SA + L + + Sbjct 605 GHPKLTYLCDTVLNHFLDAGAGLMGDNMPPSSTRVIVFTEYRDSAEDIARVLNKHGPM-- 662 Query 396 VDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVR 455 IRA + +G +S +S M Q Q E I+KF+ G +N++VATS+ EEGLDI +++V Sbjct 663 --IRASVFVGQSDSKRSEGMNQEKQLETIRKFKAGGINVIVATSIGEEGLDIGEVDLIVC 720 Query 456 YGLLTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQ 515 Y ++ I M+Q GR ++ + L R ++ + + + + Sbjct 721 YDSSSSPIRMLQRMGRTGRKRAGKIVLL------LMRGKEEDSYKKSKDNYEQIQRMISS 774 Query 516 AEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQ 553 DL + ++ + + + P+E+ Q Sbjct 775 GSRFTFRHDLSARIIPRKVKPEV--DKRFIEIPLENTQ 810 >sp|Q7SCC1|DCL2_NEUCR Dicer-like protein 2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=dcl-2 PE=2 SV=4 Length=1534 Score = 334 bits (856), Expect = 2e-98, Method: Composition-based stats. Identities = 132/526 (25%), Positives = 211/526 (40%), Gaps = 58/526 (11%) Query 1 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV 60 + R+YQ E+ +L+ +NII+ L + VA H + D ++ L V L Sbjct 69 LTARAYQLEMFEASLK-QNIIVALFSDR------VMVADGHWQWQDSGRIWFLTPTVALA 121 Query 61 TQHGEEFRRMLDGRWTVTTLSGD-----MGPRAGFGHLARCHDLLICTAELLQMALTSPE 115 Q + + L G +A + + +++ T ++L A Sbjct 122 RQQHRVLQSQIP-SVKAIMLCGQDGVDSWSEQAVWDAVLLNVRIVVSTYQILFDA----N 176 Query 116 EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGA 175 V L SLIV+DE H+ +M++ + P+P +LGLTASP Sbjct 177 AHSFVRLDSLSLIVIDEAHNCSGSHPIARLMTEAYLPAKKAGLPVPSILGLTASPLKSNN 236 Query 176 SKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPF-GDLLK 234 + + +L LD C +P +L H +P DP DL+ Sbjct 237 ------LADIEKLEQVLDAVC-RTPTIHREELLAHVNRPEMLVVSYGDSGTDPTPTDLMT 289 Query 235 KLMDQIH--DHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR-YNDAL 291 + ++ H D + P++ Q E+ KL + Q+ LR YN AL Sbjct 290 RFLEAYHRLDISKDPDVLL-LKAQRTERAREKLRQMITKKDTLAQK----ELRGVYNRAL 344 Query 292 LIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGP----- 346 L+ R + AA D+Y V+ +L R R A + P Sbjct 345 LVR---REIGPWAA--DYYLTRTVS--HMLAELERGEPPAQHRYIGEALRSIPIPAISKE 397 Query 347 ---ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLL 403 +PK++ L K+L P GI+F + R S++ + L R + Sbjct 398 PIQLSPKVQTLLKVLASH---QQDPVGIVFVKERVMV-SIVTHIISTHPLTKDRYRTASM 453 Query 404 IGA----GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL 459 IG G + MT+++ ++ F+ G NLLVATSV EEG+D+P CN+V+ + Sbjct 454 IGTASVPGKARNHMDMTKKEDMTSLEGFRLGRFNLLVATSVLEEGIDVPICNLVICFDEP 513 Query 460 TNEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQ 505 +N S +Q RGRAR S + S E + N LE LM++ Sbjct 514 SNIKSFIQRRGRAREVSSTLYLMVQNASSESATDWHN--LERLMKE 557 >sp|Q1DW80|DCL2_COCIM Dicer-like protein 2 OS=Coccidioides immitis (strain RS) OX=246410 GN=DCL2 PE=3 SV=3 Length=1435 Score = 332 bits (852), Expect = 4e-98, Method: Composition-based stats. Identities = 127/548 (23%), Positives = 223/548 (41%), Gaps = 47/548 (9%) Query 2 ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK-VVVLVNRVHLV 60 R YQ E++ +L +NII+ + TG+GKT A +R LE K V + V LV Sbjct 46 RARGYQLEMLSESLR-QNIIVAMDTGSGKTEIAILRIQRELERCPAHKFVWFMAPTVALV 104 Query 61 TQHGEEFRRMLDGRWTVTTLSGD-----MGPRAGFGHLARCHDLLICTAELLQMALTSPE 115 Q + L + L+G + + + ++I T ++L AL++ Sbjct 105 EQQHSAISKQLPA-FQTRLLTGAANVSHWSTKKIWDDILLNIRIVISTPQVLLDALSN-- 161 Query 116 EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQR--AQPLPQVLGLTASPGTG 173 V+L SL+V DE HH +D N IM + Q LP +LGLTASP T Sbjct 162 --GFVDLHTISLLVFDEAHHCVRDAPANRIMRDFYHYHRQEEGTDGLPHILGLTASPTTR 219 Query 174 GASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLL 233 + L NL+ C+ +P+ ++ + P + ++ ++ F ++ Sbjct 220 ARQT------DLEVLEINLNAVCV-TPKMHREEMMQFVHMP-EYRSIEYQPDVQNFSSIV 271 Query 234 KKLMDQIH--DHLEMPELS--RKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND 289 +KL I+ D P + R+ Q+++ E L + + R + Sbjct 272 EKLSVIINELDIENDPFVKFMRRRNDLKSRQRLLDALENKKTPCLDQLKRCLRRSRVIHR 331 Query 290 ALLIHDTVRAVDALAALQDFYHREHV-TKTQILCAERRLLALFDDRKNELAHLATHGPEN 348 L + R + ++ + Q +R + + +++ G +N Sbjct 332 ELGPWASERF--LTRCIMGLKSKQTNASGPQWADWDREDNSYMLNVLSQVVSSTEMGVQN 389 Query 349 P------KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL 402 P K+ L L N GI+F R L L +T I+ Sbjct 390 PPDELSRKVHKLIDFLV--LEHVNGSIGIVFAEERTIVIMLAQLLSLHP--RTKHIKTTA 445 Query 403 LIGAGNS-SQSTHMTQ----RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG 457 +G+ S S+ + +T+ DQ I + G +L++AT+V EEG+D+P C++V+ + Sbjct 446 FLGSSASVSRKSDITELHNPIDQSTAIDDLRTGKKDLIIATAVLEEGIDVPICDLVICFD 505 Query 458 LLTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQ-AVAAVQKMDQA 516 L + S +Q RGRAR S +A R EL +E M+Q + + ++ Sbjct 506 LPKDLRSFIQRRGRARKKGSKFALFLHSEDRATSSEL--HLMEKTMKQLYLENKRALEHI 563 Query 517 EYQAKIRD 524 +Y + + Sbjct 564 QYLENVEE 571 >sp|A3GH78|MPH1_PICST ATP-dependent DNA helicase MPH1 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) OX=322104 GN=MPH1 PE=3 SV=3 Length=1050 Score = 327 bits (837), Expect = 8e-98, Method: Composition-based stats. Identities = 117/584 (20%), Positives = 226/584 (39%), Gaps = 77/584 (13%) Query 1 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV 60 E+R YQ+ ++ A N+++ LPTG GKT A+ V L +K++ + LV Sbjct 86 FEVRDYQFNIVQRAFY-HNLLVALPTGLGKTFIASTVMLNFLRWFPESKMIFVAPTKPLV 144 Query 61 TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 Q + + + + D R G + + T ++++ L S V Sbjct 145 AQQIKACCSITGIPSSKVAILLDKT-RKNRGEIWDEKQVFFTTPQVVENDLAS----GLV 199 Query 121 ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG 180 + +L+V+DE H + YN I+ + R ++L LTA+P AS +DG Sbjct 200 DPKTIALLVIDEAHRAKGNYAYNNIVKF-----MDRFTNSYRILALTATP----ASDVDG 250 Query 181 AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI 240 V ++ NL+ + + ++ ++ K+ + D + + L I Sbjct 251 ----VQEIIDNLNISKVEVRSEESIDIIKYMKR--KRIIRRNIYQSDEIKECIDLLCTAI 304 Query 241 HDHLEMPELSRKFG-TQMYEQQVVKLSEAAAL--------AGLQEQRVYALHLRRYNDAL 291 L++ T + +A+ G + + L L Sbjct 305 APVLKVANGKGILEITDPSRINFFQCMDASRKIVANPTIPEGTKWSNFFTLQLLGVVGQC 364 Query 292 LIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALF---DDRKNELAHLAT--HGP 346 V + + + + + E + K + +L A F + K + + T P Sbjct 365 FRRLNVYGLRSFFSYFNEKYTEFMAKHSKKKSSNKLNADFYFSEPIKQLMKRIRTMIDDP 424 Query 347 E---NPKLEMLEKILQRQFSSSN--SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQ 401 + +PK+E + + L F+ +N + IIFT R+SA ++ ++++ +++ Sbjct 425 KVFSHPKIEAMMEELDEFFTINNATDSKVIIFTEFRESALEIVRFIEKVG----KNLKPH 480 Query 402 LLIGA--------------------------------GNSSQSTHMTQRDQQEVIQKFQD 429 + IG ++Q M Q+ Q+E+I+ F+ Sbjct 481 IFIGQAKERDKFDESNFGKKSKGKRVGKKQQDDSKSSSENAQINGMNQKLQKEIIKNFKQ 540 Query 430 GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFVATEGSRE 489 GT N+LVATS+ EEGLDI ++++ Y ++ I +Q GR + + + E Sbjct 541 GTYNILVATSIGEEGLDIGEVDLIICYDSTSSPIKNIQRMGRTGRKRDGKVVLLFSSNEE 600 Query 490 LKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKR 533 K + E ++Q + Q +D E I + + R Sbjct 601 SKFDKAMNGYE-YIQQHIMKGQLIDLKEQNRMIPKDWEPKVEMR 643 >sp|P84634|DCL4_ARATH Dicer-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=DCL4 PE=1 SV=2 Length=1702 Score = 327 bits (838), Expect = 9e-96, Method: Composition-based stats. Identities = 126/546 (23%), Positives = 223/546 (41%), Gaps = 57/546 (10%) Query 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKR--HLETVDGAKV-VVLVNRVHLV 60 R YQ E+ A E +N+I++L TG GKT A + HL V + L V LV Sbjct 125 RRYQVELCKKATE-ENVIVYLGTGCGKTHIAVMLIYELGHLVLSPKKSVCIFLAPTVALV 183 Query 61 TQHGEEFRRMLDGRWTVTTLSGDMGP-RAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 Q + ++ + + + + + +++L+ T ++L L + Sbjct 184 EQQAKVIADSVNFKVAIHCGGKRIVKSHSEWEREIAANEVLVMTPQILLHNL----QHCF 239 Query 120 VELTVFSLIVVDECHHTH--KDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASK 177 +++ SL++ DECHH + Y IM + + + P++ G+TASP G S Sbjct 240 IKMECISLLIFDECHHAQQQSNHPYAEIMKVFYK---SESLQRPRIFGMTASPVVGKGSF 296 Query 178 LDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLK--- 234 ++ + NL + S ++ QL P + D ++ Sbjct 297 QSENLSKSINSLENLLNAKVYSVESN-VQLDGFVSSPLVKVYYYRSALSDASQSTIRYEN 355 Query 235 -------------KLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYA 281 KL+ H + + R + ++ + L +Q ++ Sbjct 356 MLEDIKQRCLASLKLLIDTHQTQTLLSMKRLLK-RSHDNLIYTLLNLGLWGAIQAAKI-- 412 Query 282 LHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHL 341 + N + D + + + D Y + A +A ++ + L+ Sbjct 413 ----QLNSDHNVQDEPVGKNPKSKICDTYL------SMAAEALSSGVAKDENASDLLSLA 462 Query 342 ATHGPENP-KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRA 400 A P KL L KIL F + IIF +A +L L + L++ ++ Sbjct 463 ALKEPLFSRKLVQLIKILS-VFRLEPHMKCIIFVNRIVTARTLSCILNNLELLRS--WKS 519 Query 401 QLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT 460 L+G + +S M++R + ++++FQ LNLLVAT V EEGLDI C +V+RY L Sbjct 520 DFLVGLSSGLKS--MSRRSMETILKRFQSKELNLLVATKVGEEGLDIQTCCLVIRYDLPE 577 Query 461 NEISMVQARGRARADQSVYAFVATEGSRE----LKRELINEA---LETLMEQAVAAVQKM 513 S +Q+RGRAR QS YAF+ G+ + ++ +NE LE + ++ Sbjct 578 TVTSFIQSRGRARMPQSEYAFLVDSGNEKEMDLIENFKVNEDRMNLEITYRSSEETCPRL 637 Query 514 DQAEYQ 519 D+ Y+ Sbjct 638 DEELYK 643 >sp|Q9HE09|MFH2_SCHPO Putative ATP-dependent DNA helicase fml2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=fml2 PE=3 SV=1 Length=783 Score = 315 bits (806), Expect = 2e-95, Method: Composition-based stats. Identities = 107/527 (20%), Positives = 200/527 (38%), Gaps = 38/527 (7%) Query 2 ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVT 61 + R+YQ E AL N+++ LPTG GKT AA V + +K++ L L+ Sbjct 110 QYRNYQKEFCEQAL-FHNLLLALPTGLGKTFIAAVVMLNYFRWFPESKIIFLAPTKPLLL 168 Query 62 QHGEEFRRMLDGRWTVT-TLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 Q + T L+G++ P + T + LQ L + Sbjct 169 QQRVACSNVAGMSPGATAELNGEVSPDR-RLFEYNTKRVFFMTPQTLQNDLKEHLLDA-- 225 Query 121 ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG 180 ++ DE H + Y +M L R+ +VLGLTA+PG+ AS Sbjct 226 --KSIICLIFDEAHRATGNHSYAQVMRAVL-----RSNSHFRVLGLTATPGSSTAS---- 274 Query 181 AINHVLQLCANLDTWCIMSPQNCCPQLQEHS-QQPCKQYNLCHRRSQDPFGDLLKKLMDQ 239 V ++ L ++ ++ + + + + + L Sbjct 275 ----VQKVVDCLHISKLIVRNEESIDIRSYVFHKKIQLIKVTISSEMNILKSDFANLYRP 330 Query 240 IHDHL---EMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDT 296 + L ++ ++ + V L + + + + + + + + + Sbjct 331 YFNFLRQKKLIPINCECLNIKAYTLFVSLRKYSFSSKNVQSKEKSKIMSCFTLLISCAHI 390 Query 297 VRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGP------ENPK 350 +D +Q + + LF + H +PK Sbjct 391 TYLLDCHGIIQFYQKLVETKNKAEGKGSGQSFWLFTSKPFAFYLEHLHNKIQGLSLNHPK 450 Query 351 LEMLEKILQRQFSSSNSP----RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA 406 + L ++L+ F ++ R +IFT R +A + L + + +RA L IG Sbjct 451 MNHLLELLKEHFKDTSEGYQNQRVMIFTEFRNTAEYITTTLLAIRPM----VRASLFIGQ 506 Query 407 GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV 466 NS+ ST M Q Q+E I +F+ G +N LVATS+ EEGLDI ++++ Y ++ I + Sbjct 507 ANSAYSTGMNQMQQKETIDQFRAGVINTLVATSIGEEGLDIGDTDMIICYDASSSPIRTI 566 Query 467 QARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM 513 Q GR +S FV E + ++ +++ + + +K+ Sbjct 567 QRMGRTGRKKSGKVFVLLTEDCEDSKWERSQVSYRRVQKVIESGKKI 613 >sp|Q3EBC8|DCL2_ARATH Endoribonuclease Dicer homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At3g03300 PE=1 SV=2 Length=1388 Score = 324 bits (831), Expect = 2e-95, Method: Composition-based stats. Identities = 116/538 (22%), Positives = 214/538 (40%), Gaps = 34/538 (6%) Query 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRH---LETVDGAKVVVLVNRVHLV 60 RSYQ E + A++ +N I++L TG+GKT A + + + V LV +V LV Sbjct 25 RSYQVEALEKAIK-QNTIVFLETGSGKTLIAIMLLRSYAYLFRKPSPCFCVFLVPQVVLV 83 Query 61 TQHGEEFRRMLDGRWTVTTLSGDMGPRAG----FGHLARCHDLLICTAELLQMALTSPEE 116 TQ E + D + V GDMG + +++L+ T +L AL Sbjct 84 TQQAEALKMHTDLK--VGMYWGDMGVDFWDSSTWKQEVDKYEVLVMTPAILLDAL----R 137 Query 117 EEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQP-LPQVLGLTASPGTGGA 175 + L++ +++VDECHH Y IM ++ +L +P++ G+TAS Sbjct 138 HSFLSLSMIKVLIVDECHHAGGKHPYACIMREFYHKELNSGTSNVPRIFGMTASLVKTKG 197 Query 176 SKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKK 235 LD + +L +++ P +Y H + P L + Sbjct 198 ENLDSYWKKIHELETLMNSKVYTCENESVLAGFVPFSTPSFKY-YQHIKIPSPKRASLVE 256 Query 236 LMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHD 295 ++++ + + + + +L ++ + L ++ +L Sbjct 257 KLERLTIKHRLSLGTLDLNSSTVDSVEKRLLRISSTLTYCLDDLGILLAQKAAQSLSASQ 316 Query 296 TVRAVDALAALQDFYHREHVTKTQILCAERRLLA----LFDDRKNELAHLATHGPENPKL 351 D+ + + K A + LA + + A G K Sbjct 317 N----DSFLWGELNMFSVALVKKFCSDASQEFLAEIPQGLNWSVANINGNAEAGLLTLKT 372 Query 352 EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ 411 L + L +SS + R IIF +A L L + + + + + G + Q Sbjct 373 VCLIETLLG-YSSLENIRCIIFVDRVITAIVLESLLAEILP-NCNNWKTKYVAGNNSGLQ 430 Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 + T++ Q E+++ F+ G +N++VATS+ EEGLD+ CN+V+R+ +N S +Q+RGR Sbjct 431 NQ--TRKKQNEIVEDFRRGLVNIIVATSILEEGLDVQSCNLVIRFDPASNICSFIQSRGR 488 Query 472 ARADQSVYAFVATEGSRELKRELI------NEALETLMEQAVAAVQKMDQAEYQAKIR 523 AR S Y + G + L+ E ++ ++ + + R Sbjct 489 ARMQNSDYLMMVESGDLLTQSRLMKYLSGGKRMREESLDHSLVPCPPLPDDSDEPLFR 546 >sp|Q6TUI4|DICER_BOVIN Endoribonuclease Dicer OS=Bos taurus OX=9913 GN=DICER1 PE=2 SV=3 Length=1923 Score = 322 bits (825), Expect = 6e-94, Method: Composition-based stats. Identities = 138/594 (23%), Positives = 229/594 (39%), Gaps = 102/594 (17%) Query 3 LRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETV------DGAKVVVLVNR 56 R YQ E++ AL+ N I+ L TG+GKT A + K + +G + V LVN Sbjct 44 PRKYQVELLEAALD-HNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNRNGKRTVFLVNS 102 Query 57 VHLVTQHGEEFRRMLD---GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTS 113 + V Q R D G ++ +S + H +LI T + L Sbjct 103 ANQVAQQVSAVRTHSDLKVGEYSNLEVSASWTKEK-WNQEFTKHQVLIMTCYVALNVL-- 159 Query 114 PEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTG 173 + ++ L+ +L+V DECH D Y IM + P++LGLTAS G Sbjct 160 --KNGYLSLSDINLLVFDECHLAILDHPYREIMK-----LCENCPSCPRILGLTASILNG 212 Query 174 GASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLC--HRRSQDPFGD 231 + + +L L + L ++ QPC+ C + Sbjct 213 KCDP-EELEEKIQKLEKILKS--NAETATDLVVLDRYTSQPCEIVVDCGPFTDRSGLYER 269 Query 232 LLKKLMDQIH--DHLEMPELSRKFGTQMYEQQVVKLSEAAA--LAGLQEQRVYALHLRRY 287 LL +L + ++ + + S++ + + +Q++ A L +V + +R Sbjct 270 LLMELEEALNFINDCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVREL 329 Query 288 NDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPE 347 + L F K LC E A D + Sbjct 330 QKHIKHEQEELHRKFLLFTDTFLR-----KIHALCEEHFSPASLDLKF-----------V 373 Query 348 NPKLEMLEKILQRQ-------FSS------------------------------------ 364 PK+ L +IL++ F S Sbjct 374 TPKVIKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDEEDEEIEEKEKPETN 433 Query 365 -----SNSPRGIIFTRTRQSAHSLLLWLQQ--QQGLQTVDIRAQLLIGAG---NSSQSTH 414 +N GIIF R +A L +++ +Q + I + + G G N ++ Sbjct 434 FPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQ 493 Query 415 MT--QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA 472 M R Q+EV++KF+ NLL+ATS+ EEG+DIP CN+VVR+ L T S VQ++GRA Sbjct 494 MEAEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRA 553 Query 473 RADQSVYAFVA-TEGSRELKREL-INEALETLMEQAVAAVQKMDQAEYQAKIRD 524 RA S Y +A T+ + + +L +A+E ++ + +A+ + + D Sbjct 554 RAPISNYVMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGEADTEPVVDD 607 >sp|Q25BN1|DICER_CHICK Endoribonuclease Dicer OS=Gallus gallus OX=9031 GN=DICER1 PE=2 SV=3 Length=1921 Score = 321 bits (822), Expect = 2e-93, Method: Composition-based stats. Identities = 137/594 (23%), Positives = 227/594 (38%), Gaps = 102/594 (17%) Query 3 LRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLE------TVDGAKVVVLVNR 56 R YQ E++ AL+ N I+ L TG+GKT A + K +G + V LVN Sbjct 44 PRKYQVELLEAALD-HNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNKNGKRTVFLVNS 102 Query 57 VHLVTQHGEEFRRMLD---GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTS 113 + V Q R D G ++ ++ + H +L+ T + L Sbjct 103 ANQVAQQVSAVRTHSDLKVGEYSSLEVTESWTKEK-WSQEFSKHQVLVMTCHVALTVL-- 159 Query 114 PEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTG 173 E++ L+ +L+V DECH +D Y IM + P++LGLTAS G Sbjct 160 --RNEYLSLSNINLLVFDECHLAIQDHPYREIMK-----ICEDYPSCPRILGLTASILNG 212 Query 174 GASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLC--HRRSQDPFGD 231 + + L ++ QPC+ C + +G Sbjct 213 KCDPAELEEKIKKLEKILKSNAETATD---LVVLDRYTSQPCEIVVDCGPYTDKSGLYGR 269 Query 232 LLKKLMDQIH--DHLEMPELSRKFGTQMYEQQVVKLSEAAA--LAGLQEQRVYALHLRRY 287 LL++L + +H + + S++ + + +Q++ A L +V + +R Sbjct 270 LLRELDEALHFLNDCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVREL 329 Query 288 NDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPE 347 + L F K LC E A D + Sbjct 330 QKYIKHEQEELHRKFLLFTDTFLR-----KIHALCEEHFSPASLDLKF-----------V 373 Query 348 NPKLEMLEKILQRQ-------FSS------------------------------------ 364 PK+ L +IL++ F S Sbjct 374 TPKVIKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDEDEEIEEKEKPETN 433 Query 365 -----SNSPRGIIFTRTRQSAHSLLLWLQQ--QQGLQTVDIRAQLLIGAG---NSSQSTH 414 +N GIIF R +A L +++ +Q + I + + G G N ++ Sbjct 434 FPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQ 493 Query 415 M--TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA 472 M R Q+EV++KF+ NLL+ATS+ EEG+DIP CN+VVR+ L T S VQ++GRA Sbjct 494 MEVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRA 553 Query 473 RADQSVYAFVA-TEGSRELKREL-INEALETLMEQAVAAVQKMDQAEYQAKIRD 524 RA S Y +A T+ + + +L +A+E ++ + + E + + D Sbjct 554 RAPISNYIMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTSETETEPIVDD 607 >sp|Q8IYD8|FANCM_HUMAN Fanconi anemia group M protein OS=Homo sapiens OX=9606 GN=FANCM PE=1 SV=2 Length=2048 Score = 320 bits (820), Expect = 3e-93, Method: Composition-based stats. Identities = 110/560 (20%), Positives = 209/560 (37%), Gaps = 79/560 (14%) Query 2 ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVT 61 +R YQ + AL N ++ LPTG GKT AA V KVV + LVT Sbjct 90 PVRDYQLHISRAAL-FCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVVFMAPTKPLVT 148 Query 62 QHGEEF-RRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 Q E + M + + ++G + + +L T +++ L+ Sbjct 149 QQIEACYQVMGIPQSHMAEMTGSTQA-STRKEIWCSKRVLFLTPQVMVNDLS----RGAC 203 Query 121 ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG 180 +V+DE H + Y ++ + ++ ++L L+A+PG+ Sbjct 204 PAAEIKCLVIDEAHKALGNYAYCQVVRELVKYTNH-----FRILALSATPGS-------- 250 Query 181 AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI 240 I V Q+ NL I P + +S + + + P G+ L + Sbjct 251 DIKAVQQVITNLLIGQIELRSEDSPDILTYSHERKVE------KLIVPLGEELAAIQKTY 304 Query 241 HDHLE---------------MPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRV---YAL 282 LE K+ + Q K + + + G+Q+ + +A+ Sbjct 305 IQILESFARSLIQRNVLMRRDIPNLTKYQIILARDQFRK-NPSPNIVGIQQGIIEGEFAI 363 Query 283 HLRRYNDALLIHD-------------------TVRAVDALAALQDFYHREHVTKTQILCA 323 + Y+ L+ R+ + L +DF + + Sbjct 364 CISLYHGYELLQQMGMRSLYFFLCGIMDGTKGMTRSKNELGRNEDFMKLYNHLECMFART 423 Query 324 ERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSN----------SPRGIIF 373 + + +PKL+ LE+++ F S N R +IF Sbjct 424 RSTSANGISAIQQGDKN-KKFVYSHPKLKKLEEVVIEHFKSWNAENTTEKKRDETRVMIF 482 Query 374 TRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN 433 + R S + L Q Q + IR +G + + TQ++Q EV+++F+DG N Sbjct 483 SSFRDSVQEIAEMLSQHQPI----IRVMTFVGHASGKSTKGFTQKEQLEVVKQFRDGGYN 538 Query 434 LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFVATEGSRELKRE 493 LV+T V EEGLDI ++++ + + I +VQ GR + + RE + Sbjct 539 TLVSTCVGEEGLDIGEVDLIICFDSQKSPIRLVQRMGRTGRKRQGRIVIILSEGREERIY 598 Query 494 LINEALETLMEQAVAAVQKM 513 +++ + + +A+++ +++ Sbjct 599 NQSQSNKRSIYKAISSNRQV 618 >sp|Q8R418|DICER_MOUSE Endoribonuclease Dicer OS=Mus musculus OX=10090 GN=Dicer1 PE=1 SV=3 Length=1916 Score = 319 bits (818), Expect = 5e-93, Method: Composition-based stats. Identities = 139/594 (23%), Positives = 224/594 (38%), Gaps = 102/594 (17%) Query 3 LRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG------AKVVVLVNR 56 R YQ E++ AL+ N I+ L TG+GKT A + K + G + V LVN Sbjct 44 PRKYQVELLEAALD-HNTIVCLNTGSGKTFIAVLLTKELAHQIRGDLNPHAKRTVFLVNS 102 Query 57 VHLVTQHGEEFRRMLD---GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTS 113 + V Q R D G ++ ++ + H +LI T + L Sbjct 103 ANQVAQQVSAVRTHSDLKVGEYSDLEVNASWTKER-WSQEFTKHQVLIMTCYVALTVL-- 159 Query 114 PEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTG 173 + ++ L+ +L+V DECH D Y IM + P++LGLTAS G Sbjct 160 --KNGYLSLSDINLLVFDECHLAILDHPYREIMK-----LCESCPSCPRILGLTASILNG 212 Query 174 GASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLC--HRRSQDPFGD 231 + + +L L L ++ QPC+ C + Sbjct 213 KCDP-EELEEKIQKLERIL--RSDAETATDLVVLDRYTSQPCEIVVDCGPFTDRSGLYER 269 Query 232 LLKKLMDQIH--DHLEMPELSRKFGTQMYEQQVVKLSEAAA--LAGLQEQRVYALHLRRY 287 LL +L + + + S++ + + +Q++ A L +V + +R Sbjct 270 LLMELEAALDFINDCNVAVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVREL 329 Query 288 NDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPE 347 + L K LC E A D + Sbjct 330 QKYIKHEQEELHRKFLLFTDTLLR-----KIHALCEEYFSPASLDLK-----------YV 373 Query 348 NPKLEMLEKILQRQ-------FSS------------------------------------ 364 PK+ L +IL++ F S Sbjct 374 TPKVMKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDDDEEIEEKEKPETN 433 Query 365 -----SNSPRGIIFTRTRQSAHSLLLWLQQ--QQGLQTVDIRAQLLIGAG---NSSQSTH 414 +N GIIF R +A L +++ +Q + I + + G G N +S Sbjct 434 FPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRSKQ 493 Query 415 M--TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA 472 M R Q+EV++KF+ NLL+ATSV EEG+DIP CN+VVR+ L T S VQ++GRA Sbjct 494 MEAEFRKQEEVLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRA 553 Query 473 RADQSVYAFVA-TEGSRELKREL-INEALETLMEQAVAAVQKMDQAEYQAKIRD 524 RA S Y +A T+ + + +L +A+E ++ + +A+ A + D Sbjct 554 RAPISNYVMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSADGAEADVHAGVDD 607 >sp|Q9UPY3|DICER_HUMAN Endoribonuclease Dicer OS=Homo sapiens OX=9606 GN=DICER1 PE=1 SV=3 Length=1922 Score = 316 bits (809), Expect = 8e-92, Method: Composition-based stats. Identities = 135/579 (23%), Positives = 223/579 (39%), Gaps = 102/579 (18%) Query 3 LRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETV------DGAKVVVLVNR 56 R YQ E++ AL+ N I+ L TG+GKT A + K + +G + V LVN Sbjct 44 PRKYQVELLEAALD-HNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFSRNGKRTVFLVNS 102 Query 57 VHLVTQHGEEFRRMLD---GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTS 113 + V Q R D G ++ ++ + H +LI T + L Sbjct 103 ANQVAQQVSAVRTHSDLKVGEYSNLEVNASWTKER-WNQEFTKHQVLIMTCYVALNVL-- 159 Query 114 PEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTG 173 + ++ L+ +L+V DECH D Y IM + P++LGLTAS G Sbjct 160 --KNGYLSLSDINLLVFDECHLAILDHPYREIMK-----LCENCPSCPRILGLTASILNG 212 Query 174 GASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLC--HRRSQDPFGD 231 + + +L L + L ++ QPC+ C + Sbjct 213 KCDP-EELEEKIQKLEKILKS--NAETATDLVVLDRYTSQPCEIVVDCGPFTDRSGLYER 269 Query 232 LLKKLMDQIH--DHLEMPELSRKFGTQMYEQQVVKLSEAAA--LAGLQEQRVYALHLRRY 287 LL +L + ++ + + S++ + + +Q++ A L +V + +R Sbjct 270 LLMELEEALNFINDCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVREL 329 Query 288 NDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPE 347 + L F K LC E A D + Sbjct 330 QKYIKHEQEELHRKFLLFTDTFLR-----KIHALCEEHFSPASLDLKF-----------V 373 Query 348 NPKLEMLEKILQRQ-------FSS------------------------------------ 364 PK+ L +IL++ F S Sbjct 374 TPKVIKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDEDEEIEEKEKPETN 433 Query 365 -----SNSPRGIIFTRTRQSAHSLLLWLQQ--QQGLQTVDIRAQLLIGAG---NSSQSTH 414 +N GIIF R +A L +++ +Q + I + + G G N ++ Sbjct 434 FPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQ 493 Query 415 M--TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA 472 M R Q+EV++KF+ NLL+ATS+ EEG+DIP CN+VVR+ L T S VQ++GRA Sbjct 494 MEAEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRA 553 Query 473 RADQSVYAFVA-TEGSRELKREL-INEALETLMEQAVAA 509 RA S Y +A T+ + + +L +A+E ++ + Sbjct 554 RAPISNYIMLADTDKIKSFEEDLKTYKAIEKILRNKCSK 592 >sp|Q9VDA0|FANCM_DROME DEAD-box ATP-dependent DNA helicase Fancm OS=Drosophila melanogaster OX=7227 GN=Fancm PE=1 SV=2 Length=1489 Score = 315 bits (807), Expect = 8e-92, Method: Composition-based stats. Identities = 121/593 (20%), Positives = 239/593 (40%), Gaps = 65/593 (11%) Query 1 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV 60 + LRSYQ ++ AL KN ++ LPTG GKT AA V K+V + LV Sbjct 56 LPLRSYQQTIVQSAL-FKNTLVVLPTGLGKTFIAAVVMYNFYRWYPKGKIVFMAPTRPLV 114 Query 61 TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 +Q ++++ T PR L + T +++ + + E Sbjct 115 SQQIHASQKIMPFPSEDTVQLTGQLPRPKRAELWASKRVFFATPQVVHSDMLEADGECSF 174 Query 121 ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG 180 LIVVDE H Y + L ++L L+A+PG Sbjct 175 PFGSIKLIVVDEAHRAKGRYAYTQVAD-----CLMARNRYFRMLALSATPGRT------- 222 Query 181 AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI 240 + V +C NL + + +Q + + + ++ + ++L+ I Sbjct 223 -MEDVAAVCRNLYISNLQVRWDTSIDVQPYIHR--RTIRTIVVSLKERIKEPRERLLQII 279 Query 241 HDHLEMPELSRKFGTQM---YEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTV 297 +L + F ++ ++ Q QR ++ N A+ I Sbjct 280 EPYLRQLMEAEIFKGNKGTVSRNSLLFEQKSFVERSAQGQRHPDHNIIMGNFAMCIS-MY 338 Query 298 RAVDALA------ALQDFYHREHVTKTQILCAERRLLALFDDRKNEL--------AHLAT 343 ++D + + +F + + +L + L L + + EL H T Sbjct 339 HSLDLMERHGLRVFVNNFDADDDGREKFVLARDGNLRNLVEQVRQELGANPLDYTTHAMT 398 Query 344 HGPENP----------KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGL 393 +G P K E L ++L + F ++ R I+F R+S + L Q + + Sbjct 399 NGEVPPLPSDLDFGHAKYEKLRQVLVQHFQANPDSRAIVFCEYRESVMLIHRLLLQHRPV 458 Query 394 QTVDIRAQLLIGAGNSSQSTH-MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNV 452 +R + +G G++ +++ +TQ+ Q +++ F+ GT N+LVATS+ EEGLD+ + Sbjct 459 ----LRPRCFVGQGSTVGASYALTQKQQLQIMTDFRSGTSNVLVATSIGEEGLDVGEVEM 514 Query 453 VVRYGLL-TNEISMVQARGR-ARADQSVYAFVATEG-SRELKRELI---NEALETLMEQA 506 +V + + TN +Q GR R + TEG +++ ++++ ++ + L+ + Sbjct 515 IVCFDICSTNPTRFIQRIGRTGRKKNGEVVMLVTEGREQQVLKDVLANKDQINKKLLNSS 574 Query 507 VAAVQ------KMDQAEYQAKIRDLQQAALTKRAAQ----AAQRENQRQQFPV 549 V + +M +++Q K + + + + A +E+++++ PV Sbjct 575 VVKLSLYEQNPRMVPSKFQPKCEEKHMEPVAEEKPKPKSAAKTKESRKRKQPV 627 >sp|A0MQH0|DICER_CRIGR Endoribonuclease Dicer OS=Cricetulus griseus OX=10029 GN=DICER1 PE=2 SV=3 Length=1917 Score = 314 bits (805), Expect = 3e-91, Method: Composition-based stats. Identities = 137/579 (24%), Positives = 221/579 (38%), Gaps = 102/579 (18%) Query 3 LRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG------AKVVVLVNR 56 R YQ E++ AL+ N I+ L TG+GKT A + K + G + V LVN Sbjct 44 PRKYQVELLEAALD-HNTIVCLNTGSGKTFIAVLLTKELAHQIRGDLNPRAKRTVFLVNS 102 Query 57 VHLVTQHGEEFRRMLD---GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTS 113 + V Q R D G ++ ++ + H +LI T + L Sbjct 103 ANQVAQQVSAVRTHSDLKVGEYSNLEVNASWTKER-WSQEFTKHQVLIMTCYVALNVL-- 159 Query 114 PEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTG 173 + ++ L+ +L+V DECH D Y IM + P++LGLTAS G Sbjct 160 --KNGYLSLSDINLLVFDECHLAILDHPYREIMK-----LCESCPSCPRILGLTASILNG 212 Query 174 GASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLC--HRRSQDPFGD 231 + + +L L + L ++ QPC+ C + Sbjct 213 KCDP-EELEEKIQKLEKILKS--NAETATDLVVLDRYASQPCEIVVDCGPFTDRSGLYER 269 Query 232 LLKKLMDQIH--DHLEMPELSRKFGTQMYEQQVVKLSEAAA--LAGLQEQRVYALHLRRY 287 LL +L + I+ + + S++ + + +Q++ A L +V + +R Sbjct 270 LLMELEEAINFINDCNVSVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVREL 329 Query 288 NDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPE 347 + L K LC E A D + Sbjct 330 QKYIKHEQEELHRKFLLFTDTLLR-----KIHALCEEHFSPASLDLK-----------YV 373 Query 348 NPKLEMLEKILQRQ-------FSS------------------------------------ 364 PK+ L +IL++ F S Sbjct 374 TPKVMKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDDDEEIEEKEKPETN 433 Query 365 -----SNSPRGIIFTRTRQSAHSLLLWLQQ--QQGLQTVDIRAQLLIGAG---NSSQSTH 414 +N GIIF R +A L +++ +Q + I + + G G N +S Sbjct 434 FPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRSKQ 493 Query 415 MT--QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA 472 M R Q+EV++KF+ NLL+ATSV EEG+DIP CN+VVR+ L T S VQ++GRA Sbjct 494 MEAEFRKQEEVLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRA 553 Query 473 RADQSVYAFVA-TEGSRELKREL-INEALETLMEQAVAA 509 RA S Y +A T+ + + +L +A+E ++ + Sbjct 554 RAPISNYVMLADTDKIQSFEEDLKTYKAIEKILRNKCSK 592 >sp|A0A1D5PRR9|FANCM_CHICK Fanconi anemia group M protein OS=Gallus gallus OX=9031 GN=FANCM PE=1 SV=1 Length=2041 Score = 314 bits (805), Expect = 3e-91, Method: Composition-based stats. Identities = 122/614 (20%), Positives = 207/614 (34%), Gaps = 93/614 (15%) Query 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQH 63 R YQ + AL N ++ LPTG GKT AA V KV+ L LV Q Sbjct 85 RPYQLRMARAAL-FANTLLCLPTGLGKTFVAAVVMYNFYRWFPSGKVLFLAPTKALVAQQ 143 Query 64 GEEFRR-MLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 E + M + ++G L + T +++ L+ Sbjct 144 MEACAQLMGIPGRDMAEMTGGTQA-LSRRELWASRRVFFLTPQIMVNDLS----RGTCPA 198 Query 123 TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAI 182 +VVDE H + Y ++ + L R +VL LTA+PG+ Sbjct 199 VEVKCLVVDEAHKALGNHAYCQVVKE-----LSRYTTQFRVLALTATPGS--------DT 245 Query 183 NHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHD 242 V Q+ +NL I P++Q +S + + + P G+ L + Sbjct 246 KAVQQVVSNLLIAQIELCSEDSPEIQPYSHERQVE------KIVVPLGEELGGIQRAYIH 299 Query 243 HLEMP---------------ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRV---YALHL 284 LE K+ + Q K + + G+Q + +AL + Sbjct 300 VLETFAGRLIKLGVLARRDVPSLTKYQIILARDQYRK-NPSPQNVGMQPGIIEGDFALCI 358 Query 285 RRYNDALLIHDT-------------------VRAVDALAALQDFYHREHVTKTQILCAER 325 Y+ L+ R + L +DF + Sbjct 359 SLYHGYELLQQMGVRSLFIYLCGIMDGSKGLTRTKNELGRNEDFMRLYQQLTDMFSDTCQ 418 Query 326 RLLALFDDRKNELAHLAT-HGPENPKLEMLEKILQRQFSSSN--------------SPRG 370 + ++ +PKL+ LE+I+ F S R Sbjct 419 TSANGNLHKSRTVSENKKEFIYSHPKLKKLEEIVIEHFKSRKMGCSDQTTSGGTCVDTRV 478 Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 +IF+ R S + L + + +R +G + TQ++Q EV+++F++G Sbjct 479 MIFSSFRDSVQEIAEMLSRFSPV----VRVMTFVGHSTGKSTKGFTQKEQLEVVKRFREG 534 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRE 489 N LV+T V EEGLDI ++++ + + I +VQ GR R Q + EG E Sbjct 535 GYNTLVSTCVGEEGLDIGEVDLIICFDAQKSPIRLVQRMGRTGRQRQGRVVVILAEGREE 594 Query 490 L-------KRELINEALE-TLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRE 541 R I +A+ M +M ++ + K + R Sbjct 595 RTYNQSQSNRRSIQKAISGNKMLHFYQHSPRMIPEGINPELHRM-FITAEKYKPNDSGRL 653 Query 542 NQRQQFPVEHVQLL 555 + + + H L Sbjct 654 PKGRPSSLHHKSAL 667 >sp|Q6TV19|DICER_DANRE Endoribonuclease Dicer OS=Danio rerio OX=7955 GN=dicer1 PE=2 SV=2 Length=1865 Score = 313 bits (801), Expect = 8e-91, Method: Composition-based stats. Identities = 129/578 (22%), Positives = 214/578 (37%), Gaps = 74/578 (13%) Query 3 LRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAK---RHLETVDGAKVVVLVNRVHL 59 R YQ E++ ALE N I+ L TG+GKT A + K + +G + V LVN Sbjct 34 PRKYQVELLEAALE-HNTIVCLNTGSGKTFIAVLLIKELSHQIRGENGKRTVFLVNAASS 92 Query 60 VTQHGEEFRRMLDGRWTVTTLSGDMG--PRAGFGHLARCHDLLICTAELLQMALTSPEEE 117 V Q R D + +S DM P + + +L+ T + L + Sbjct 93 VAQQASTVRTHSDLQVGD-YMSEDMTSWPEEMWNREMIENQVLVMTCHIFLHVL----KN 147 Query 118 EHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQP-LPQVLGLTASPGTGGAS 176 + L+ +L+V DECH Y IM + P P++LGLTAS G Sbjct 148 GVLPLSKINLLVFDECHLAITGHPYREIMK------ICEGCPSCPRILGLTASILNGKCD 201 Query 177 KLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLC-HRRSQDPFGDLLKK 235 D + L L + L ++ QP ++ C + Q + L Sbjct 202 PCD-LEEKIQNLEKILQS--NAETATDLVVLDRYASQPREEVLDCGQYQDQSGLSERLLN 258 Query 236 LMDQIHDHLEMPELSRKFGTQ----MYEQQVVKLSE-AAALAGLQEQRVYALHLRRYNDA 290 +D+ + L LS + + +Q + L + + +R Sbjct 259 ELDEALNFLNDCNLSVHREDRDPTFISKQVLNDCRAVLTVLGPWCADKAAGIMVRELQKY 318 Query 291 LLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPK 350 + L + H + L + L + E Sbjct 319 IKHEQEELNRKFLLFTDTILRKIHALCEEHFSPASLDLKFVTPKVIRLLEIL---HEYKP 375 Query 351 LEMLEKILQRQFSSSNSPR-----------------------------------GIIFTR 375 E + +++ N GIIF Sbjct 376 FERQQFESVEWYNNRNQDNYVSWSDSEDDDEDEEAEAKEKTEANFPSPFTNILCGIIFVE 435 Query 376 TRQSAHSLLLWLQQ--QQGLQTVDIRAQLLIGAG---NSSQSTHMT--QRDQQEVIQKFQ 428 R +A L +++ +Q + I + + G N ++ M R Q+EV++KF+ Sbjct 436 RRYTAVVLNRLIKEAGKQDPELAYISSNFITGHSIGKNQPRNKQMEVEFRKQEEVLRKFR 495 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFVA-TEGS 487 NLL+ATS+ EEG+DIP CN+VVR+ L T S VQ++GRARA S Y +A +E + Sbjct 496 AHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPVSNYIMLADSERT 555 Query 488 RELKREL-INEALETLMEQAVAAVQKMDQAEYQAKIRD 524 + + +L +A+E ++ + + + E + D Sbjct 556 KTFQEDLKTYKAIEKILRNKCSKSAECNDFELEPVTDD 593 >sp|B3DLA6|DICER_XENTR Endoribonuclease Dicer OS=Xenopus tropicalis OX=8364 GN=dicer1 PE=2 SV=2 Length=1893 Score = 313 bits (801), Expect = 1e-90, Method: Composition-based stats. Identities = 130/579 (22%), Positives = 226/579 (39%), Gaps = 71/579 (12%) Query 3 LRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG------AKVVVLVNR 56 R YQ E++ AL+ N I+ L +G+GKT A ++K + G + V LVN Sbjct 34 PRKYQVELLEAALD-HNTIVCLNSGSGKTFIAVLLSKELSYQIRGDFSKNTKRTVFLVNS 92 Query 57 VHLVTQHGEEFRRMLD---GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTS 113 V+Q R D G ++ + + H +L+ T + L S Sbjct 93 EKQVSQQVSAVRTHTDLKVGEYSDQEKTQCWAKERWYLEF-ETHQVLVMTCHIFLNVLKS 151 Query 114 PEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTG 173 +V L+ +L+V DECH +D Y IM + QP P++LGLTAS G Sbjct 152 ----GNVSLSNINLLVFDECHLAIQDHPYREIMK-----ICESCQPCPRILGLTASILNG 202 Query 174 GASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLC--HRRSQDPFGD 231 D + +L L L ++ QPC+ C + + Sbjct 203 KCDPRD-LEEKIQKLEEIL--RSNAETATDLVVLDRYASQPCEIVLDCGPYIDKSGLYQR 259 Query 232 LLKKLMDQIH--DHLEMPELSRKFGTQMYEQQVVKLSEAAAL--AGLQEQRVYALHLRRY 287 LL +L + ++ + S++ + + +Q++ + L +V + +R Sbjct 260 LLNELDEALNFLIDCNISTHSKERDSTLISKQILSDCQTVLLVLGPWCADKVAGMMVREL 319 Query 288 NDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATH--G 345 + L + H + + + +L + Sbjct 320 QKYIKHEQEELHRKFLLFTDTILRKIHALCEEHFSPASLDMKFVTPKVIKLLEILRKYKP 379 Query 346 PENPKLEMLE-----------------------------KILQRQFSS--SNSPRGIIFT 374 E + E +E + + F S +N GIIF Sbjct 380 YERQQFESVEWYNNRNQDNYVSWSDSEDDDDEDEEIEEKEKTETSFPSPFTNILCGIIFV 439 Query 375 RTRQSAHSLLLWLQQ--QQGLQTVDIRAQLLIGAG---NSSQSTHMT--QRDQQEVIQKF 427 R +A L +++ +Q + I + + G G N ++ M R Q+EV++KF Sbjct 440 ERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEVEFRKQEEVLRKF 499 Query 428 QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFVA-TEG 486 + NLL+ATS+ EEG+DIP CN+VVR+ L + S VQ++GRARA S Y +A ++ Sbjct 500 RAHETNLLIATSIVEEGVDIPKCNLVVRFDLPSEYRSYVQSKGRARAPISNYIMLADSDK 559 Query 487 SRELKREL-INEALETLMEQAVAAVQKMDQAEYQAKIRD 524 + + +L +A+E ++ + E + + D Sbjct 560 IKAFEEDLKTYKAIEKILRNKCSKSIDCGNTESEPIVDD 598 >sp|Q8LMR2|DCL1_ORYSJ Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp. japonica OX=39947 GN=DCL1 PE=3 SV=1 Length=1883 Score = 312 bits (800), Expect = 1e-90, Method: Composition-based stats. Identities = 137/568 (24%), Positives = 212/568 (37%), Gaps = 113/568 (20%) Query 2 ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAK----RHLETVDGAKVVVLVNRV 57 R YQ EV+ A + +N I +L TGAGKT A + K + L+ V LV +V Sbjct 266 RARQYQLEVLEQA-KSRNTIAFLETGAGKTLIAVLLIKSVCDKMLKENKKMLAVFLVPKV 324 Query 58 HLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE 117 LV Q +L+ TA++L L Sbjct 325 PLVYQ------------------------------------VLVMTAQILLNIL----RH 344 Query 118 EHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGT--GGA 175 +++ L+++DECHH K Y+++MS++ + P V G+TASP G Sbjct 345 SIIKMDAIHLLILDECHHAVKKHPYSLVMSEFYHTTPKE--KRPAVFGMTASPVNLKGVT 402 Query 176 SKLDGAINHVLQLCANLDTW-CIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLK 234 S+ D AI + L + LD+ C + + +L++H P + + + Sbjct 403 SQEDCAIK-IRNLESKLDSVVCTIKDRK---ELEKHVPMPLEVVVQYDKAATLWSLHEQI 458 Query 235 KLMDQI-------------------HDHLEMPELSRKFG-------------TQMYEQQV 262 K M+ D EL +G Q Sbjct 459 KQMESTVEEAALSSSKRTKWQFMGARDAGSRDELRLVYGVSERTESDGAANLIQKLRAIN 518 Query 263 VKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILC 322 L E + + + L+ A D L + D H + + Sbjct 519 YALGELGQWCAYKVAQSFLTALQNDERANYQVDVKFQESYLKKVVDLLHCQLTEGAAMKS 578 Query 323 AERRLLALFDDRKNE-------------------LAHLATHGPENPKLEMLEKILQRQFS 363 + ++ N + G P+++ L KIL + + Sbjct 579 ETSDVEMQNTEKHNTNDLEEGELPDSHGEHVDEVIGAAVADGKVTPRVQALIKILLK-YQ 637 Query 364 SSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEV 423 + R IIF +A L L + L IR LIG N + M Q+ Sbjct 638 HTEDFRAIIFVERVVTALVLPKVLAELPSLSF--IRCASLIGHNN---NQEMRACQMQDT 692 Query 424 IQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFVA 483 I KF+DG + LLVATSVAEEGLDI CNVV+R+ L ++ +Q+RGRAR S Y + Sbjct 693 ISKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILML 752 Query 484 TEGSRELKRELIN--EALETLMEQAVAA 509 G+ + L N + ETL ++A+ Sbjct 753 ERGNISHETFLRNARNSEETLRKEAMER 780 >sp|Q9LXW7|DCL3_ARATH Endoribonuclease Dicer homolog 3 OS=Arabidopsis thaliana OX=3702 GN=DCL3 PE=1 SV=2 Length=1580 Score = 310 bits (795), Expect = 4e-90, Method: Composition-based stats. Identities = 115/566 (20%), Positives = 218/566 (39%), Gaps = 77/566 (14%) Query 5 SYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRH-LETVDGAKVVVLVNRVHLVTQH 63 SY+ +V A + +NII L TG K+ + K D ++ L V+LV Q Sbjct 46 SYELKVYEVA-KNRNIIAVLGTGIDKSEITKRLIKAMGSSDTDKRLIIFLAPTVNLVKQQ 104 Query 64 GEEFRRMLDGRWTVTTLSGDMGPRAG----FGHLARCHDLLICTAELLQMALTSPEEEEH 119 E R +++ + V G G + HD+L+ T ++L L Sbjct 105 CCEIRALVNLK--VEEYFGAKGVDKWTSQRWDEEFSKHDVLVMTPQILLDVL----RSAF 158 Query 120 VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLD 179 ++L + L+++DECHHT + Y +M ++ + P++ GLTAS Sbjct 159 LKLEMVCLLIIDECHHTTGNHPYAKLMKEFYH----ESTSKPKIFGLTASAVIRKG---- 210 Query 180 GAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQ-QPCKQYNLCHRRSQDPFGDLLKK--L 236 + SP N Q+ E + K +N R + F +K+ + Sbjct 211 ----------------IVSSPSNYAAQVSELERLMDSKIFNPEEREGVEKFATTVKEGPI 254 Query 237 MDQIHDHLEMPELSRKFGTQ--MYEQQVVKLSEAAALAGLQEQRVYALHLRR----YNDA 290 + + EL K T ++ + +L E + L + + +R Y + Sbjct 255 LYNPSPSCSL-ELKEKLETSHLKFDASLRRLQELGKDSFLNMDNKFETYQKRLSIDYREI 313 Query 291 LLIHDTVRAVDALAALQDFYHREHVTKTQ--------ILCAE--------------RRLL 328 L D + + A A + + TK + ++C E + Sbjct 314 LHCLDNLGLICAHLAAEVCLEKISDTKEESETYKECSMVCKEFLEDILSTIGVYLPQDDK 373 Query 329 ALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQ 388 +L D ++N L+ + + G +PKL+ L +L F + +I +A + +++ Sbjct 374 SLVDLQQNHLSAVIS-GHVSPKLKELFHLLD-SFRGDKQKQCLILVERIITAKVIERFVK 431 Query 389 QQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIP 448 ++ L +++ L + N S + Q+ Q E+ FQ G +NLL T V EEG +P Sbjct 432 KEASLAYLNV---LYLTENNPSTNVS-AQKMQIEIPDLFQHGKVNLLFITDVVEEGFQVP 487 Query 449 HCNVVVRYGLLTNEISMVQARGRARADQSVYAFVATEGS---RELKRELINEALETLMEQ 505 C+ +V + L S Q++ A+ S G+ R+ +L+ + + Sbjct 488 DCSCMVCFDLPKTMCSYSQSQKHAKQSNSKSIMFLERGNPKQRDHLHDLMRREVLIQDPE 547 Query 506 AVAAVQKMDQAEYQAKIRDLQQAALT 531 A + ++++ + Sbjct 548 APNLKSCPPPVKNGHGVKEIGSMVIP 573 >sp|Q69LX2|DCL2B_ORYSJ Endoribonuclease Dicer homolog 2b OS=Oryza sativa subsp. japonica OX=39947 GN=DCL2B PE=2 SV=2 Length=1377 Score = 309 bits (792), Expect = 5e-90, Method: Composition-based stats. Identities = 102/501 (20%), Positives = 191/501 (38%), Gaps = 35/501 (7%) Query 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHL----ETVDGAKVVVLVNRVHL 59 R YQ E + A+ G N + +L TG+GKT A + + + V LV V L Sbjct 35 RWYQLEALERAVRG-NTLAFLETGSGKTLIAVMLLRAYAHRVRRPDSRRFAVFLVPTVVL 93 Query 60 VTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCH----DLLICTAELLQMALTSPE 115 V Q + D V G+MG R ++L+ T ++L L Sbjct 94 VGQQARVVEQHTDL--VVKQFCGEMGVDFWDAATWRSQLEDGEVLVMTPQILLDNL---- 147 Query 116 EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRA--QPLPQVLGLTASPGTG 173 L +L++ DECHH +T Y I ++ +L + PLP++ G++AS Sbjct 148 RHSFFRLQDIALLIFDECHHARGNTPYACIFKEFYHPQLNSSASDPLPRIFGMSASLIYS 207 Query 174 GASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRR--SQDPFGD 231 + ++ +++ L E+ + S + + Sbjct 208 KDLNQHNYSKQISEIENLMNSKVYTVDSESA--LSEYIPFASTKIVHFDDSNISSELHAN 265 Query 232 LLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDAL 291 +L L H+E + + +Q + + L V+ + Sbjct 266 ILSCLNRLTKKHIEALDRKLHGSSLENAKQRISKLHRTFVYCLYNLGVWLAAKAAEVQSY 325 Query 292 LIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRK---NELAHLATHGPEN 348 + + L + + R + + R L+ F + + G Sbjct 326 EENSLSFWGETLDKNVEGFIRNYSEEVH------RELSCFLKNGHIGEKFPADSQDGILT 379 Query 349 PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN 408 PK+ L + L Q+ R I+F + ++ L L + +++ AG+ Sbjct 380 PKVHCLIRTLL-QYRHMQDLRCIVFVQRVITSIVLEPLLSSIHQMSGWNVK----HMAGS 434 Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 ++++ E+++ F+ G +++++AT + EEGLD+P CN+V+R+ S +Q+ Sbjct 435 RPGLLSQSRKNHTEIVESFRKGKVHIIIATQILEEGLDVPSCNLVIRFDPSATVCSFIQS 494 Query 469 RGRARADQSVYAFVATEGSRE 489 RGRAR + S Y + G E Sbjct 495 RGRARMENSDYLLLVGRGDVE 515 >sp|Q09884|DCR1_SCHPO Protein Dicer OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=dcr1 PE=1 SV=1 Length=1374 Score = 309 bits (791), Expect = 7e-90, Method: Composition-based stats. Identities = 130/529 (25%), Positives = 230/529 (43%), Gaps = 53/529 (10%) Query 3 LRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLE--------TVDGAKV-VVL 53 LR YQ +V A + +N ++ + TGAGKT A + K+ LE ++ K+ V L Sbjct 12 LRKYQQDVYNIASK-QNTLLVMRTGAGKTLLAVKLIKQKLEEQILIQESNLEHKKISVFL 70 Query 54 VNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFG---HLARCHDLLICTAELLQMA 110 VN+V LV Q E R L + V G++ ++ +++++ TA+L + Sbjct 71 VNKVPLVFQQAEYIRSQLPAK--VGMFYGELSIEMSEQLLTNIILKYNVIVITADLFYLF 128 Query 111 LTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKL----QRAQPLPQVLGL 166 L + + +LI+ DECHH + Y IM+ + ++ LP++ G+ Sbjct 129 LA----RGFLSINDLNLIIFDECHHAIGNDAYARIMNDFYHRAKAVLSKKHFTLPRIFGM 184 Query 167 TASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQ 226 TASP TG L + + Q D+ + +N +L ++ P + Y + + Sbjct 185 TASPFTGKKGNL---YHRLYQWEQLFDSKAHVVSEN---ELADYFCLPEESYVMYSNKLV 238 Query 227 DPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR 286 P D + K ++ ++ + K + E L + + R Sbjct 239 VPPSDSIIKKCEETLQGCKLISRAVKTALAETIDMGLWFGEQVWLYLVD----FVETKRL 294 Query 287 YNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGP 346 AL + A+ L+ F K + +FD Sbjct 295 KKKALGKQLSDDEELAIDRLKIFVEDWKNNKYSDNGPR---IPVFDST-----------D 340 Query 347 ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA 406 K+ L ++L+ + S+S R +IF + +A +L L+++ L +IRA IG Sbjct 341 VTDKVFKLLELLKATYRKSDSVRTVIFVERKATAFTLSLFMKT---LNLPNIRAHSFIGH 397 Query 407 GNSSQST-HMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465 G S Q MT R Q++ + KF+ G N+L+AT+VAEEG+D+P CN+V+R+ + Sbjct 398 GPSDQGEFSMTFRRQKDTLHKFKTGKYNVLIATAVAEEGIDVPSCNLVIRFNICRTVTQY 457 Query 466 VQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMD 514 VQ+RGRARA S + + +++E E ++ A++ + + Sbjct 458 VQSRGRARAMASKFLIFLNTEELLIHERILHE--EKNLKFALSELSNSN 504 >sp|Q10HL3|DCL2A_ORYSJ Endoribonuclease Dicer homolog 2a OS=Oryza sativa subsp. japonica OX=39947 GN=DCL2A PE=2 SV=1 Length=1410 Score = 308 bits (789), Expect = 1e-89, Method: Composition-based stats. Identities = 107/531 (20%), Positives = 201/531 (38%), Gaps = 44/531 (8%) Query 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHL----ETVDGAKVVVLVNRVHL 59 R YQ E + A+ G N + +L TG+GKT A + + + V LV V L Sbjct 35 RWYQLEALERAVRG-NTLAFLETGSGKTLIAVMLLRAYAHRVRRPDSRRFAVFLVPTVVL 93 Query 60 VTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCH----DLLICTAELLQMALTSPE 115 V Q + D V G+MG R ++L+ T ++L L Sbjct 94 VGQQARVVEQHTDL--VVKQFCGEMGVDFWDAATWRSQLEDGEVLVMTPQILLDNL---- 147 Query 116 EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRA--QPLPQVLGLTASPGTG 173 L +L++ DECHH +T Y I ++ +L + PLP++ G++AS Sbjct 148 RHSFFRLQDIALLIFDECHHARGNTPYACIFKEFYHPQLNSSASDPLPRIFGMSASLIYS 207 Query 174 GASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRR--SQDPFGD 231 + ++ +++ L E+ + S + + Sbjct 208 KDLNPHNYSKQISEIENLMNSKVYTVDSESA--LSEYIPFASTKIVDFDDSNISSELHAN 265 Query 232 LLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDAL 291 +L L H+E + + +Q + + L V+ + Sbjct 266 ILSCLNRLNKKHIEALDRKLHGSSLENAKQRISKLHHTFVYCLYNLGVWLAAKAAEVQSY 325 Query 292 LIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRK---NELAHLATHGPEN 348 + + L + + R + + R L+ F + + G Sbjct 326 EENSLSFWGETLDKNVEGFIRNYSEEVH------RELSCFLKNGHIGEKFPADSQDGILT 379 Query 349 PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN 408 PK+ L + L Q+ R I+F ++ L L + +++ AG+ Sbjct 380 PKVHCLIRTLL-QYRHMQDLRCIVFVERVITSIVLEHLLSSIHQMSGWNVK----HMAGS 434 Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 ++++ E+++ F+ G +++++AT + EEGLD+P CN+V+R+ S +Q+ Sbjct 435 RPGLLSQSRKNHTEIVESFRKGKVHIIIATQILEEGLDVPSCNLVIRFDPSATVCSFIQS 494 Query 469 RGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQ 519 RGRAR + S Y + G E +T E+ +A+ Q M + + Sbjct 495 RGRARMENSDYLLLVGRGDVEA---------QTNAEKFLASGQIMREESLR 536 >sp|A2QX45|DCL22_ASPNC Dicer-like protein 2-2 OS=Aspergillus niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) OX=425011 GN=dcl2-2 PE=3 SV=2 Length=1362 Score = 307 bits (787), Expect = 2e-89, Method: Composition-based stats. Identities = 116/528 (22%), Positives = 216/528 (41%), Gaps = 54/528 (10%) Query 1 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK-VVVLVNRVHL 59 + +R YQ E++ +L+ +N+I+ +PTG GKT+ A ++ + K V +L V L Sbjct 21 LRIREYQLEMLNESLK-RNLIVVMPTGTGKTQVAILRILADIDKGNSDKFVWLLCPTVAL 79 Query 60 VTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 Q ++ L +A + + + + T ++L AL+ Sbjct 80 SEQQY--------IQYATVFLPSGAEDKAIWDNALSGIKIAVSTYQVLYDALS----HGF 127 Query 120 VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRA-QPLPQVLGLTASPGTGGASKL 178 V+L+ SL++ DE HH KD V N IM + + Q Q LP++LGLTASP S L Sbjct 128 VKLSQMSLLIFDEAHHCKKDHVANKIMQVHYHKQHQSGVQNLPKILGLTASPILSDLSSL 187 Query 179 DGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMD 238 + + +NL + C +P+ QL + + +P L P + +++ Sbjct 188 EI-------VESNLGSIC-KTPRQYYAQLLQFTNRPLILPRL--PTYTIPNCSVKAPILE 237 Query 239 QIHDHLEMPELSRKFGTQMYEQQ--VVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDT 296 ++ L + +Q + + + + + QE ++A + ++ Sbjct 238 KLCGILSSEDEVPSSSKMKSKQLKHIRRFMQTSE-SINQELGIWAATEYMRKSIMHFKES 296 Query 297 VRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEK 356 +R + ++ + L + + +P + L Sbjct 297 MRMGAEKTNISNYGKDFAMEILTRLGKLQDCSPAIQPEE-----------ISPMCQCLLD 345 Query 357 ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHM- 415 L + + G++F R + +L WL + L + IG + S Sbjct 346 ELSKAYREGFC--GLVFVTQRATVLAL-KWLIENHPLTSHLFTCGTFIGMSTTQYSKTEL 402 Query 416 ----TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 R+Q E ++KF+ G+LNL++ T EEG+D+P CN V+ + + S +Q RGR Sbjct 403 GNLHDIRNQTETLEKFRQGSLNLIITTDALEEGIDVPACNTVLNFNCQLSLKSFIQRRGR 462 Query 472 ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQ 519 AR + S + + + S L+ L + + VQK+ AE + Sbjct 463 ARRENSQFIIIMEDESGP-------RYLKRLEMEEIELVQKLQNAERR 503 >sp|I3XHK1|FANCM_ARATH DEAD-box ATP-dependent RNA helicase FANCM OS=Arabidopsis thaliana OX=3702 GN=FANCM PE=2 SV=1 Length=1344 Score = 307 bits (785), Expect = 4e-89, Method: Composition-based stats. Identities = 107/582 (18%), Positives = 213/582 (37%), Gaps = 40/582 (7%) Query 1 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV 60 + LR YQ+ + AL N ++ LPTG GKT AA V + K+V LV Sbjct 115 VPLRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVMYNYFRWFPQGKIVFAAPSRPLV 173 Query 61 TQHGEEFRRMLDGRWT-VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 Q E ++ L+G P + L + + T ++L+ + S Sbjct 174 MQQIEACHNIVGIPQEWTIDLTGQTCP-SKRAFLWKSKRVFFVTPQVLEKDIQS----GT 228 Query 120 VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLD 179 +V+DE H + Y V++ + + + +Q ++L LTA+PG+ Sbjct 229 CLTNYLVCLVIDEAHRALGNYSYCVVVRELMAVPIQL-----RILALTATPGSK------ 277 Query 180 GAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQ-QPCKQYNLCHRRSQDPFGDLLKKLMD 238 + + NL + + + + + + + D L ++ Sbjct 278 --TQAIQGIIDNLQISTLEYRNESDHDVCPYVHDRKLEVIEVPLGQDADDVSKRLFHVIR 335 Query 239 QIHDHLEMPELSRKFGTQ---MYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHD 295 L+ ++ Q +E + + A + + + ++ Sbjct 336 PYAVRLKNFGVNLNRDIQTLSPHEVLMARDKFRQAPLPGLPHVNHGDVESCFAALITLYH 395 Query 296 TVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLE 355 + + + + E K K + +HG +PKL + Sbjct 396 IRKLLSSHGIRPAYEMLEEKLKEGPFARLMSKNEDIRMTKLLMQQRLSHGAPSPKLSKML 455 Query 356 KILQRQF--SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQST 413 +IL F + R IIF+ R S ++ L + ++A IG + Sbjct 456 EILVDHFKVKDPKTSRVIIFSNFRGSVRDIMNALSNIGDM----VKATEFIGQSSGKTLK 511 Query 414 HMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-A 472 +Q+ QQ V++KF+ G N++VATS+ EEGLDI ++V+ + + + M+Q GR Sbjct 512 GQSQKIQQAVLEKFRAGGFNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTG 571 Query 473 RADQSVYAFVATEGSRE---LKRELINEALETLMEQA------VAAVQKMDQAEYQAKIR 523 R + +A EGS + ++++ A++ M +M Y+ +++ Sbjct 572 RKNNGRVVVLACEGSEKNSYMRKQASGRAIKKHMRNGGTNSFNFHPSPRMIPHVYKPEVQ 631 Query 524 DLQQAALTKRAAQAAQRENQRQQFPVEHVQLLCINCMVAVGH 565 ++ + +E + P +L + + Sbjct 632 HVEFSIKQFVPRGKKLQEEYATETPAFQKKLTPAETHMLAKY 673 >sp|Q75AA7|MPH1_EREGS ATP-dependent DNA helicase MPH1 OS=Eremothecium gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=MPH1 PE=3 SV=2 Length=1077 Score = 302 bits (773), Expect = 1e-88, Method: Composition-based stats. Identities = 111/597 (19%), Positives = 210/597 (35%), Gaps = 103/597 (17%) Query 2 ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVT 61 E+R YQ+ ++ AL +N++ +PTG GKT A+ V + G K++ LV Sbjct 91 EVREYQFNIVHRAL-FENVLCAIPTGMGKTFIASTVMLNYYRWTVGTKIIFTAPTRPLVA 149 Query 62 QHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVE 121 Q + + + T + D R + + T ++++ L + + Sbjct 150 QQIKACLGITGIPYNDTAILLDKS-RKHREQIWSEKRVFFATPQVVENDL----KRGALN 204 Query 122 LTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGA 181 L+V+DE H Y + + R +VL LTA+P T Sbjct 205 PKDVVLLVIDEAHRARGSYAYVELTKF-----IDRFNTSYRVLALTATPAT--------D 251 Query 182 INHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQ-----DPFGDLLKKL 236 + V ++ NL I + + ++ + + + + G + + Sbjct 252 LEGVQEVVDNLQISKIELRTEESEDIVRYMKRRDTEEVIVPLIPEIEDIIEQLGIAITPV 311 Query 237 MDQ-----IHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDAL 291 + + ++D E ++ Q ++ L+ ++ G++ + + L L + + Sbjct 312 LKEAVQLGLYDDCEPVNINAFIAMQQSQKI---LANSSIPEGVKWKNYFILQLLCHVGHM 368 Query 292 LIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALF-----DDRKNELAHLATHGP 346 L + + D +RE TK I + + A F + T P Sbjct 369 LKRLKIYGIQTFYTYFDNKYREFTTKYGIGKSTNKTAASFYYSSILKNITKTCQAYTANP 428 Query 347 E---NPKLEMLEKILQRQFSSS-NSPRGIIFTRTRQSAHSLL------------------ 384 + KL + L F+S+ + R IIFT R+SA L+ Sbjct 429 SFLGHGKLYRVRDELSTFFASAGDDSRVIIFTELRESALELVKCVDNMNDRFIRPHIFIG 488 Query 385 -----------LWLQQQQGLQTVDI--------------------------RAQLLIGAG 407 +L++ + R G+ Sbjct 489 QAKGKESFDDGEYLRKHAPKGRKKVDRIRRLEEEKRLADEKLRKKEEEKLARTARRTGSS 548 Query 408 NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 +Q + MTQ+ Q+EVI F+ G N+LV TS+ EEGLDI ++++ Y ++ I +Q Sbjct 549 EEAQISGMTQKQQKEVISLFKKGDYNVLVCTSIGEEGLDIGEVDMIICYDTTSSPIKNIQ 608 Query 468 ARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD 524 GR + + + K E ME + + + K+ D Sbjct 609 RMGRTGRKRDGRIVLLLSDNEPRK-------FEQAMEDYAQLQRLIGEESLNYKVTD 658 >sp|P34529|DCR1_CAEEL Endoribonuclease dcr-1 OS=Caenorhabditis elegans OX=6239 GN=dcr-1 PE=1 SV=3 Length=1910 Score = 304 bits (777), Expect = 1e-87, Method: Composition-based stats. Identities = 121/581 (21%), Positives = 229/581 (39%), Gaps = 65/581 (11%) Query 1 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETV------DGAKVVVLV 54 R YQ E++ A + KN I+ L TG+GKT A + K + + G + +V Sbjct 11 FNPRDYQVELLDKATK-KNTIVQLGTGSGKTFIAVLLLKEYGVQLFAPLDQGGKRAFFVV 69 Query 55 NRVHLVTQHG---EEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMAL 111 +V+LV Q E G+ T SG + + H +++ TA+ L + Sbjct 70 EKVNLVEQQAIHIEVHTSFKVGQVHGQTSSGLWDSKEQCDQFMKRHHVVVITAQCLLDLI 129 Query 112 TSPEEEEHVELTVFSLIVVDECHHTHK-DTVYNVIMSQYLELKLQRAQPLPQVLGLTASP 170 ++++ +++ DECHH Y IM Y L++ +P+P+VLGLTAS Sbjct 130 ----RHAYLKIEDMCVLIFDECHHALGSQHPYRSIMVDY--KLLKKDKPVPRVLGLTASL 183 Query 171 GTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFG 230 + + + + +L + +D+ I + + L ++ +P + +C G Sbjct 184 IKAKVAP-EKLMEQLKKLESAMDSV-IETASD-LVSLSKYGAKPYEVVIICKDFEIGCLG 240 Query 231 ----DLLKKLMDQIHDHLEMP-ELSRKFGTQMYEQQVVKL-------SEAAALAGLQEQR 278 D + ++ D+ + E L + A + + Sbjct 241 IPNFDTVIEIFDETVAFVNTTTEFHPDLDLDPRRPIKDSLKTTRAVFRQLGPWAAWRTAQ 300 Query 279 VYALHLRRYNDALLIHDTV---------RAVDALAALQDFYHREHVTKTQILCAERRLLA 329 V+ L + + ++ D + L+ + + +R++ Sbjct 301 VWEKELGKIIKSQVLPDKTLRFLNMAKTSMITIKRLLEPEMKKIKSIEALRPYVPQRVIR 360 Query 330 LFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQ 389 LF+ L T PE K M + + IIF R A+SLLL ++ Sbjct 361 LFEI-------LETFNPEFQKERM-------KLEKAEHLSAIIFVDQRYIAYSLLLMMRH 406 Query 390 QQGLQ--TVDIRAQLLIGAGNSSQSTHMTQ---RDQQEVIQKFQDGTLNLLVATSVAEEG 444 + + + ++GA + ++ +Q + Q EV+++F +N L+ATSV EEG Sbjct 407 IKSWEPKFKFVNPDYVVGASGRNLASSDSQGLHKRQTEVLRRFHRNEINCLIATSVLEEG 466 Query 445 LDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFVATEGS-RELKRELIN-EALETL 502 +D+ CN+V+++ + S VQ++GRAR S Y E +L + + +E + Sbjct 467 VDVKQCNLVIKFDRPLDMRSYVQSKGRARRAGSRYVITVEEKDTAACDSDLKDFQQIEKI 526 Query 503 M---EQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR 540 + + V + D ++ D Q A + Sbjct 527 LLSRHRTVNNPIEDDSDRFEEFDVDSQMEPYVVEKTGATLK 567 >sp|A7TSV4|MPH1_VANPO ATP-dependent DNA helicase MPH1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 GN=MPH1 PE=3 SV=1 Length=1012 Score = 289 bits (740), Expect = 3e-84, Method: Composition-based stats. Identities = 108/596 (18%), Positives = 207/596 (35%), Gaps = 107/596 (18%) Query 1 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV 60 E+R YQ+ ++ +L +N + +PTG GKT A+ V K++ LV Sbjct 85 FEVREYQFNIVQKSLY-QNTLCAIPTGMGKTFIASTVMLNFFRWSKNGKIIFTAPTRPLV 143 Query 61 TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 Q + + + D R + + T ++++ L + + Sbjct 144 AQQIKACLGITGIPHDQAAILLDKS-RKNREDIWTQKRVFFTTPQVIENDL----KRGVL 198 Query 121 ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG 180 +V DE H Y ++ + R ++L LTA+PGT Sbjct 199 NPKDIICLVFDEAHRATGSYAYTNVVKF-----IDRFNSSYRILALTATPGT-------- 245 Query 181 AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQ-----DPFGDLLKK 235 I V ++ NL+ I + + ++ K+ ++ + G +K Sbjct 246 DIASVQEVVNNLNISNIEIRTEESMDIIRYMKKRYKEKIEIGLTTEIEMIIEQLGIAVKP 305 Query 236 LMDQ-----IHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDA 290 ++ Q I+D +++ Q +Q + + G++ + + L L + Sbjct 306 VLQQAVELGIYDECHPSQINSFVAMQKSQQII---ANPTIAEGIKWRNFFILQLLNHVGQ 362 Query 291 LLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPE--- 347 +L + + + E TK + + ++ A F L L + Sbjct 363 MLKRIKIYGIRSFYGYFRNKFSEFTTKYNMGKSTNKIAASFYYHPI-LKILMKNCDVYTS 421 Query 348 ------NPKLEMLEKILQRQFSSSN-SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRA 400 + KL+ + L F +S R IIFT R+SA ++ + + + IR Sbjct 422 NSSFIGHDKLQKIINELSDFFLNSRLDSRVIIFTELRESALEIVKTIDN---MGSSSIRP 478 Query 401 QLLIGAGNSSQS--------------------------------THMTQRDQQ------- 421 + IG ++ + Q++Q+ Sbjct 479 HIFIGQARGKENFDDEGFIRKNKPKGRKKADRLKRLEEDKQKQLSKAKQKEQEKVERSSR 538 Query 422 -------------------EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE 462 EVI KF++G N+LV TS+ EEGLDI ++++ + + Sbjct 539 RTGSSEEAQISGMNQKQQKEVISKFKNGDYNVLVCTSIGEEGLDIGEVDMIICFDTTGSP 598 Query 463 ISMVQARGRARADQSVYAFVATEGSRELKRELINE---ALETLMEQAVAAVQKMDQ 515 I +Q GR + + G+ K E E L+ L+ Q +K D+ Sbjct 599 IKNIQRMGRTGRKRDGKILLLFSGNESRKFEKAMEDYYDLQRLIGQNFVEYKKSDR 654 >sp|Q6CQX2|MPH1_KLULA ATP-dependent DNA helicase MPH1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=MPH1 PE=3 SV=2 Length=1002 Score = 289 bits (738), Expect = 4e-84, Method: Composition-based stats. Identities = 105/578 (18%), Positives = 207/578 (36%), Gaps = 100/578 (17%) Query 2 ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVT 61 E+R YQ++++ AL +N++ +PTG GKT A+ V + +K++ LV Sbjct 100 EVRQYQYDIVRCAL-FENVLCAIPTGTGKTFIASTVMLNYYRWTKSSKIIFTAPTRPLVA 158 Query 62 QHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVE 121 Q + + ++ T + D R + + + T ++++ L + + Sbjct 159 QQIKACLGITGIPYSDTAILLDKS-RKNREEIWQQKRVFFTTPQVVENDL----KRGVLN 213 Query 122 LTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGA 181 L+V+DE H + Y + + R ++L LTA+P Sbjct 214 PKDVVLLVIDEAHRARGNYAYVELTKF-----IDRFNTSYRLLALTATP--------AAD 260 Query 182 INHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQ-----YNLCHRRSQDPFGDLLKKL 236 + V ++ NL I + + + ++ + G + + Sbjct 261 LEGVQEVVNNLHISKIELRTEDSLDVARYMMRRDREMIEIGLIPEIEEVVEQIGIAIAPV 320 Query 237 MDQ-----IHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDAL 291 + + I++ E +++ Q ++ ++ + GL+ + + L L + Sbjct 321 LQEAIQLGIYESCEPHQINAFVAMQQSQKIIL---NPSIPEGLKWKNFFILQLLSQVGHM 377 Query 292 LIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALF----------DDRKNELAHL 341 + + A + E TK + + + A F D K L Sbjct 378 YRRLRIYGLRAFYNYFQNKYTEFTTKYSMKKSTNKTAANFFYSPILKTVIDKCKRRLEEP 437 Query 342 ATHGPENPKLEMLEKILQRQFSSS-NSPRGIIFTRTRQSAHSLL--------------LW 386 + E KLE L L F+ + + R IIFT R+SA ++ ++ Sbjct 438 EFYSHE--KLEYLNNELADFFTMAPSDSRAIIFTELRESALEIVKSIDILNDGALRPHIF 495 Query 387 LQQQQGLQTVD-----------------------------------------IRAQLLIG 405 + Q +G + D R G Sbjct 496 IGQAKGKEHFDEETYIRKNKPKGRTKAARLRRIEEENRVEEEKKRQKEQAKLERTGRRTG 555 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465 + +Q + M Q+ Q++VI F+ G N+LV TS+ EEGLDI ++++ + ++ I Sbjct 556 SSEEAQLSGMNQKQQKKVISDFKKGIYNVLVCTSIGEEGLDIGEVDLIICFDSTSSPIKN 615 Query 466 VQARGRARADQSVYAFVATEGSRELKRELINEALETLM 503 +Q GR + + G+ + K E E L Sbjct 616 IQRMGRTGRKRDGRIVLLFSGNEKFKFEQAMNDYENLQ 653 >sp|Q58900|Y1505_METJA Putative ATP-dependent RNA helicase MJ1505 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ1505 PE=3 SV=2 Length=778 Score = 272 bits (694), Expect = 2e-79, Method: Composition-based stats. Identities = 112/485 (23%), Positives = 213/485 (44%), Gaps = 39/485 (8%) Query 1 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV 60 +E R YQ + AL+ K + L TG GKT A V L D KV++L LV Sbjct 13 LEARLYQQIIAANALKKK-TLCVLSTGLGKTAIAILVIAGILTKKD-GKVLILAPSRPLV 70 Query 61 TQHGEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 QH +++L+ + L+G + P+ L + + I T ++++ + + Sbjct 71 EQHYNRLKQVLNIDEDKIIALTGKIQPKK-RAELYKKGKIFIATPQVIENDIIA----GR 125 Query 120 VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLD 179 + + F L++ DE HHT D Y + ++ + +LGLTASPG+ Sbjct 126 INVDEFILLIADEAHHTTGDHAYAFVAKKFKD--------KCHILGLTASPGS------- 170 Query 180 GAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQ 239 I+ V+++C NL + ++ + + + + F LK + + Sbjct 171 -DIDKVMEICENLGIEHVEVRTEDDEDVKPYIAK--VKLIPIRIDLPNEFKRALKLINEA 227 Query 240 IHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRA 299 + + L++ + + + + + L E+ Y L ++ ++AL + + A Sbjct 228 LKERLKILKDAGVINSIADVTKTELIELNNKLFSYDEEVKYEL-IKVCSEALKL---MHA 283 Query 300 VDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNE-LAHLATHGPENPKLEMLEKIL 358 + L + ++ K + + + D++ E + L E+PKL + ++ Sbjct 284 KELLESQGKSVFLNYINKLSMQRTKSAKSIVNDEKVREAVNLLMKSDVEHPKLGKVVDMV 343 Query 359 QRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQR 418 + + R IIF + R + ++ L Q I+A IG N + M+Q+ Sbjct 344 KNILEKNKDERIIIFAQYRDTVEKIVNLLTQN------GIKAIRFIGQANK-EGKGMSQK 396 Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSV 478 +Q E I++F+ ++LV+TSV+EEG+DIP N ++ Y + +EI +Q RGRA + Sbjct 397 EQIEAIERFKK-EGSVLVSTSVSEEGIDIPSVNYIIFYEPVPSEIRFIQRRGRAMRGEGG 455 Query 479 YAFVA 483 +V Sbjct 456 KVYVL 460 >sp|Q6FPQ3|MPH1_CANGA ATP-dependent DNA helicase MPH1 OS=Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=MPH1 PE=3 SV=1 Length=1052 Score = 275 bits (703), Expect = 6e-79, Method: Composition-based stats. Identities = 103/596 (17%), Positives = 210/596 (35%), Gaps = 107/596 (18%) Query 1 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV 60 E+R YQ++++ L +NI+ +PTG GKT A+ V AK++ LV Sbjct 80 FEVRDYQFDIVRKGL-LQNILCAIPTGMGKTFIASTVMLNFFRWTKTAKIIFTAPTRPLV 138 Query 61 TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 Q + + T + D R + + T ++++ L + + Sbjct 139 AQQIKACLGITGIPHDQTAILLDKT-RKNREEIWANKRVFFTTPQVVENDL----KRGVL 193 Query 121 ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG 180 +V+DE H Y ++ + R ++L LTA+P T Sbjct 194 NPKDIVCLVIDEAHRATGSYAYANLVKF-----INRFNSSYRLLALTATPAT-------- 240 Query 181 AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI 240 I V ++ NL+ I + ++ ++ K + + ++ +++++L I Sbjct 241 DIEGVQEVVNNLNISKIEIRTEESMDIVKYMKKKIK--DRVNIQTTVEIENIVEQLGIAI 298 Query 241 HDHLEMPELSRKFGT---------QMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDAL 291 L + + + ++ + + G++ + + L L + + Sbjct 299 LPVLNQAVELGIYESCPPSAINAFKAMQKSQAIIMNPSIPEGIKWRNYFILQLLNHVGQM 358 Query 292 LIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALF----------DDRKNELAHL 341 L + + + +E TK + + ++ A F + + ++ Sbjct 359 LKRIKIYGIRTFFSYFQNKVKEFTTKYDLGKSTNKIAAGFYYHPMIQAITKECEEKIKDP 418 Query 342 ATHGPENPKLEMLEKILQRQFSSSN-SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRA 400 G + KLE L L + F + R IIFT R+SA ++ + ++ +IR Sbjct 419 NFLG--HGKLEHLRDELTQFFYENPFESRVIIFTELRESALEIVKCID---SMENSEIRP 473 Query 401 QLLIGAGNSSQSTH---------------------------MTQRDQQEVIQ-------- 425 + IG + M + +Q +Q Sbjct 474 HIFIGQAKGKEGFDEVKFVRKHGPKGRKKSDREKRLEEERRMDEEKKQAALQEKLERTSR 533 Query 426 -----------------------KFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE 462 KF+ G N+LV TS+ EEGLDI ++++ Y ++ Sbjct 534 RTGSSEEAQLSGMNQKQQKEVIKKFKSGLYNVLVCTSIGEEGLDIGEVDLIICYDTTSSP 593 Query 463 ISMVQARGR-ARADQSVYAFVATEGSRELKRELINEA--LETLMEQAVAAVQKMDQ 515 I +Q GR R + + + +N+ L+ L+ Q + +K D+ Sbjct 594 IKNIQRMGRTGRKRDGRIVLMFSSNEASKFDQSMNDYYNLQKLISQHLVQYRKSDR 649 >sp|A6ZVS0|MPH1_YEAS7 ATP-dependent DNA helicase MPH1 OS=Saccharomyces cerevisiae (strain YJM789) OX=307796 GN=MPH1 PE=3 SV=1 Length=993 Score = 274 bits (700), Expect = 8e-79, Method: Composition-based stats. Identities = 105/597 (18%), Positives = 209/597 (35%), Gaps = 98/597 (16%) Query 2 ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVT 61 E+R YQ+ ++ +L +N + +PTG GKT A+ V + AK++ LV Sbjct 86 EVRDYQYTIVHKSL-FQNTLCAIPTGMGKTFIASTVMLNYFRWTKKAKIIFTAPTRPLVA 144 Query 62 QHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVE 121 Q + + T + D R + + T ++++ L + ++ Sbjct 145 QQIKACLGITGIPSDQTAILLDKS-RKNREEIWANKRVFFATPQVVENDL----KRGVLD 199 Query 122 LTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGA 181 +V+DE H Y ++ + R ++L LTA+P + Sbjct 200 PKDIVCLVIDEAHRATGSYAYTNVVKF-----IDRFNSSYRLLALTATPAS--------D 246 Query 182 INHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQ-----DPFGDLLKKL 236 + V ++ NLD I + ++ ++ K+ + + G +K + Sbjct 247 LEGVQEVVNNLDISKIEIRTEESMDIVKYMKKRKKEKIEVPLLLEIEDIIEQLGIAVKPV 306 Query 237 MDQI--HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIH 294 + Q E + S+ + +Q ++ G++ + + L L +L Sbjct 307 LQQAIELGIYEECDPSQINAFKAMQQSQKIIANPTIPEGIKWRNFFILQLLNNVGQMLKR 366 Query 295 DTVRAVDALAALQDFYHREHVTKTQILCAERRLLALF-------DDRKNELAHLATHGPE 347 + + E TK + + ++ A F + + +L+ Sbjct 367 LKIYGIRTFFNYFQNKCTEFTTKYNLKKSTNKIAAEFYYHPILKNIKNQCENYLSDPKFV 426 Query 348 -NPKLEMLEKILQRQF-SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 + KL+ + L F + R IIFT R+SA ++ ++ + IR + IG Sbjct 427 GHGKLQCVRDELMEFFQKRGSDSRVIIFTELRESALEIVKFID---SVANDQIRPHIFIG 483 Query 406 AGNSSQSTH------------------MTQRDQQ-------------------------- 421 + + + +++Q+ Sbjct 484 QARAKEGFDEVKYTRKHAPKGRKKVERLHRQEQEKFLEAERTKRAANDKLERSARRTGSS 543 Query 422 --------------EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 EVI F+ G N+LV TS+ EEGLDI ++++ Y ++ I +Q Sbjct 544 EEAQISGMNQKMQKEVIHNFKKGEYNVLVCTSIGEEGLDIGEVDLIICYDTTSSPIKNIQ 603 Query 468 ARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD 524 GR + + + K E E TL QA+ + Q +D + I + Sbjct 604 RMGRTGRKRDGKIVLLFSSNESYKFERAMEDYSTL--QALISKQCIDYKKSDRIIPE 658 >sp|P40562|MPH1_YEAST ATP-dependent DNA helicase MPH1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=MPH1 PE=1 SV=1 Length=993 Score = 270 bits (691), Expect = 1e-77, Method: Composition-based stats. Identities = 103/599 (17%), Positives = 209/599 (35%), Gaps = 102/599 (17%) Query 2 ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVT 61 E+R YQ+ ++ +L +N + +PTG GKT A+ V + AK++ LV Sbjct 86 EVRDYQYTIVHKSL-FQNTLCAIPTGMGKTFIASTVMLNYFRWTKKAKIIFTAPTRPLVA 144 Query 62 QHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVE 121 Q + + T + D R + + T ++++ L + ++ Sbjct 145 QQIKACLGITGIPSDQTAILLDKS-RKNREEIWANKRVFFATPQVVENDL----KRGVLD 199 Query 122 LTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGA 181 +V+DE H + Y ++ + R ++L LTA+P + Sbjct 200 PKDIVCLVIDEAHRATGSSAYTNVVKF-----IDRFNSSYRLLALTATPAS--------D 246 Query 182 INHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIH 241 + V ++ NLD I + ++ ++ K+ + D++++L + Sbjct 247 LEGVQEVVNNLDISKIEIRTEESMDIVKYMKKRKKEKIEVPLLLE--IEDIIEQLGMAVK 304 Query 242 DHLEMPELSRKFGT---------QMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALL 292 L+ + + +Q ++ G++ + + L L +L Sbjct 305 PVLQQAIELGIYEECDPSQINAFKAMQQSQKIIANPTIPEGIKWRNFFILQLLNNVGQML 364 Query 293 IHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALF-------DDRKNELAHLATHG 345 + + E TK + + ++ A F + + +L+ Sbjct 365 KRLKIYGIRTFFNYFQNKCTEFTTKYNLKKSTNKIAAEFYYHPILKNIKNQCENYLSDPK 424 Query 346 PE-NPKLEMLEKILQRQF-SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLL 403 + KL+ + L F + R IIFT R+SA ++ ++ + IR + Sbjct 425 FVGHGKLQCVRDELMDFFQKRGSDSRVIIFTELRESALEIVKFID---SVADDQIRPHIF 481 Query 404 IGAGNSSQSTH------------------MTQRDQQ------------------------ 421 IG + + + +++Q+ Sbjct 482 IGQARAKEGFDEVKYTRKHAPKGRKKVERLHRQEQEKFLEAERTKRAANDKLERSARRTG 541 Query 422 ----------------EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465 EVI F+ G N+LV TS+ EEGLDI ++++ Y ++ I Sbjct 542 SSEEAQISGMNQKMQKEVIHNFKKGEYNVLVCTSIGEEGLDIGEVDLIICYDTTSSPIKN 601 Query 466 VQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD 524 +Q GR + + + K E E TL QA+ + Q +D + I + Sbjct 602 IQRMGRTGRKRDGKIVLLFSSNESYKFERAMEDYSTL--QALISKQCIDYKKSDRIIPE 658 >sp|A1ZAW0|DCR2_DROME Endoribonuclease Dcr-2 OS=Drosophila melanogaster OX=7227 GN=Dcr-2 PE=1 SV=1 Length=1722 Score = 260 bits (665), Expect = 6e-73, Method: Composition-based stats. Identities = 109/569 (19%), Positives = 224/569 (39%), Gaps = 59/569 (10%) Query 1 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG------AKVVVLV 54 ++ R YQ ++ L N I++LPTG+GKT A V KR + D + + + Sbjct 6 IKPRGYQLRLVD-HLTKSNGIVYLPTGSGKTFVAILVLKRFSQDFDKPIESGGKRALFMC 64 Query 55 NRVHLVTQHGEEFRRMLDGRWTVTTLSGDMG----PRAGFGHLARCHDLLICTAELLQMA 110 N V L Q RR + + V G+ G R + + + +L+ TA++ Sbjct 65 NTVELARQQAMAVRRCTN--FKVGFYVGEQGVDDWTRGMWSDEIKKNQVLVGTAQVFLDM 122 Query 111 LTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASP 170 +T + +V L+ S++++DECHH + M + + LP+V+GLT Sbjct 123 VT----QTYVALSSLSVVIIDECHHGTGHHPFREFMRLF---TIANQTKLPRVVGLTGVL 175 Query 171 GTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQ-YNLCHRRSQDPF 229 G L++ + +S + ++ +P + + H+ Sbjct 176 IKGNEITNVATKLKELEITYRGNI-ITVSDTKEMENVMLYATKPTEVMVSFPHQEQVLTV 234 Query 230 GDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND 289 L+ +++ + L++ + + + L + + + +++ ++ L + + Sbjct 235 TRLISAEIEKFYVSLDLMNIG--VQPIRRSKSLQCLRDPSKKSFVKQ--LFNDFLYQMKE 290 Query 290 ALLIHDTVRAVDALAALQDFYHREHVTKTQILCAE------RRLLALFDDRKNELAHLAT 343 + ++ A+ +L D R+ T + L ++ L + ++ + Sbjct 291 YGIYAASI-AIISLIVEFDIKRRQAETLSVKLMHRTALTLCEKIRHLLVQKLQDMTYDDD 349 Query 344 HGPEN----------PKLEMLEKILQRQF--SSSNSPRGIIFTRTRQSAH----SLLLWL 387 N PK++ L+ F ++F R + LL ++ Sbjct 350 DDNVNTEEVIMNFSTPKVQRFLMSLKVSFADKDPKDICCLVFVERRYTCKCIYGLLLNYI 409 Query 388 QQQQGLQTVDIRAQLLIGAGNSSQSTH--MTQRDQQEVIQKFQDGTLNLLVATSVAEEGL 445 Q L+ V + Q ++G N S + ++ Q+ IQ+F+DG NL++ +SV EEG+ Sbjct 410 QSTPELRNV-LTPQFMVGRNNISPDFESVLERKWQKSAIQQFRDGNANLMICSSVLEEGI 468 Query 446 DIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFVATEGSRELK-------RELINEA 498 D+ CN V + VQ++GRAR ++ + + RE R+ N+ Sbjct 469 DVQACNHVFILDPVKTFNMYVQSKGRARTTEAKFVLFTADKEREKTIQQIYQYRKAHNDI 528 Query 499 LETLMEQAVAAVQKMDQAEYQAKIRDLQQ 527 E L ++ + + D+ Sbjct 529 AEYLKDRVLEKTEPELYEIKGHFQDDIDP 557 >sp|Q7MGP7|RHLB_VIBVY ATP-dependent RNA helicase RhlB OS=Vibrio vulnificus (strain YJ016) OX=196600 GN=rhlB PE=3 SV=1 Length=435 Score = 182 bits (462), Expect = 1e-49, Method: Composition-based stats. Identities = 74/333 (22%), Positives = 123/333 (37%), Gaps = 60/333 (18%) Query 252 KFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR-----YNDALLIHDTVRAVDALAAL 306 +G + Y++Q+ KL + R+ + +R A+++ + R D L + Sbjct 118 AYGGESYDKQLAKLQGGVDVLIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFD-LGFI 176 Query 307 QDFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPEN----PKLEMLEKIL 358 +D ++ + RL LF R ELA H PE+ P+ + +I Sbjct 177 KDIRFLFR----RMPAPQERLNMLFSATLSYRVQELAFEHMHNPEHVVVEPEQKTGHRIQ 232 Query 359 QRQFSSSNSP---------------RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLL 403 + F SN R IIF T+ S+ L R LL Sbjct 233 EELFYPSNEDKMALLQTLIEEEWPDRAIIFANTKYKCESIW------AHLAADGHRVGLL 286 Query 404 IGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI 463 G + Q+ +++++++F G+++LLVAT VA GL IP V Y L + Sbjct 287 TG--------DVPQKKREKILEQFTQGSVDLLVATDVAARGLHIPQVTHVFNYDLPDDCE 338 Query 464 SMVQAR---GRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA 520 V GRA A +F + + L A+E +E + + + A Sbjct 339 DYVHRIGRTGRAGASGHSISFACEDYAINLP------AIEEYIEHTIP----VSDYDSSA 388 Query 521 KIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQ 553 I+DL T A +R N + Sbjct 389 LIQDLPAPVRTPSARNQQRRTNTGGARSGDRKS 421 Score = 37.9 bits (86), Expect = 0.33, Method: Composition-based stats. Identities = 21/120 (18%), Positives = 36/120 (30%), Gaps = 15/120 (13%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRML--DGRW 75 TG GKT A HL + +++ L Q + ++ G Sbjct 55 TGTGKTLAFLTATFNHLLTTHAHEGRQPTQPRAIIMAPTRELAIQIYNDAEPLIASTGIK 114 Query 76 TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH 135 G+ + L D+LI T + ++ L +V+DE Sbjct 115 AALAYGGESYDKQL-AKLQGGVDVLIGTTGRIIDFY----KQRVFNLNNIQAVVLDEADR 169 >sp|Q87KH5|RHLB_VIBPA ATP-dependent RNA helicase RhlB OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) OX=223926 GN=rhlB PE=3 SV=1 Length=437 Score = 182 bits (462), Expect = 1e-49, Method: Composition-based stats. Identities = 74/351 (21%), Positives = 129/351 (37%), Gaps = 62/351 (18%) Query 228 PFGDLLKKLMDQIHDHLEMPELS--RKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR 285 P +L ++ + + L +G + Y++Q+ KL + + R+ + + Sbjct 92 PTRELAIQIFNDAEPLIASTGLKAALAYGGESYDKQLAKLQDGVDILIGTTGRIIDFYKQ 151 Query 286 R-----YNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKN 336 R A+++ + R D L ++D ++ + RL LF R Sbjct 152 RVFNLNNIQAVVLDEADRMFD-LGFIKDIRFLFR----RMPEPKERLNMLFSATLSYRVQ 206 Query 337 ELAHLATHGPEN----PKLEMLEKILQRQFSSSNSP---------------RGIIFTRTR 377 ELA H PE+ P + +I + F SN R I+F T+ Sbjct 207 ELAFEHMHNPEHVVVEPAQKTGHRIQEELFYPSNEDKMALLQTLIEEEWPDRAIVFANTK 266 Query 378 QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA 437 S+ L R LL G + Q+ +++++++F G +++LVA Sbjct 267 HKCESVW------GHLAADGHRVGLLTG--------DVPQKKREKILEQFTKGDVDILVA 312 Query 438 TSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR---GRARADQSVYAFVATEGSRELKREL 494 T VA GL IP V Y L + V GRA A +F E + L Sbjct 313 TDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINLP--- 369 Query 495 INEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQ 545 A+E +E + + + + A I+DL + +R N Sbjct 370 ---AIEEYIEHTIP----VSEYDASALIQDLPAPIRMRAPRVQQRRTNTGG 413 Score = 37.5 bits (85), Expect = 0.45, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 37/120 (31%), Gaps = 15/120 (13%) Query 26 TGAGKTRAAAYVAKRHLETVDGA--------KVVVLVNRVHLVTQHGEEFRRML--DGRW 75 TG GKT A HL T + +++ L Q + ++ G Sbjct 55 TGTGKTLAFLTATFNHLLTTPEHEGRQPTQPRAIIMAPTRELAIQIFNDAEPLIASTGLK 114 Query 76 TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH 135 G+ + L D+LI T + ++ L +V+DE Sbjct 115 AALAYGGESYDKQL-AKLQDGVDILIGTTGRIIDFY----KQRVFNLNNIQAVVLDEADR 169 >sp|Q8DDN6|RHLB_VIBVU ATP-dependent RNA helicase RhlB OS=Vibrio vulnificus (strain CMCP6) OX=216895 GN=rhlB PE=3 SV=1 Length=435 Score = 182 bits (462), Expect = 2e-49, Method: Composition-based stats. Identities = 74/333 (22%), Positives = 123/333 (37%), Gaps = 60/333 (18%) Query 252 KFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR-----YNDALLIHDTVRAVDALAAL 306 +G + Y++Q+ KL + R+ + +R A+++ + R D L + Sbjct 118 AYGGESYDKQLTKLQGGVDVLIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFD-LGFI 176 Query 307 QDFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPEN----PKLEMLEKIL 358 +D ++ + RL LF R ELA H PE+ P+ + +I Sbjct 177 KDIRFLFR----RMPAPQERLNMLFSATLSYRVQELAFEHMHNPEHVVVEPEQKTGHRIQ 232 Query 359 QRQFSSSNSP---------------RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLL 403 + F SN R IIF T+ S+ L R LL Sbjct 233 EELFYPSNEDKMALLQTLIEEEWPDRAIIFANTKYKCESIW------AHLAADGHRVGLL 286 Query 404 IGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI 463 G + Q+ +++++++F G+++LLVAT VA GL IP V Y L + Sbjct 287 TG--------DVPQKKREKILEQFTQGSVDLLVATDVAARGLHIPQVTHVFNYDLPDDCE 338 Query 464 SMVQAR---GRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA 520 V GRA A +F + + L A+E +E + + + A Sbjct 339 DYVHRIGRTGRAGASGHSISFACEDYAINLP------AIEEYIEHTIP----VSDYDSSA 388 Query 521 KIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQ 553 I+DL T A +R N + Sbjct 389 LIQDLPAPVRTPSARNQQRRTNTGGARSGDRKS 421 Score = 37.5 bits (85), Expect = 0.37, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 37/120 (31%), Gaps = 15/120 (13%) Query 26 TGAGKTRAAAYVAKRHLETVDGA--------KVVVLVNRVHLVTQHGEEFRRML--DGRW 75 TG GKT A HL T + +++ L Q + ++ G Sbjct 55 TGTGKTLAFLTATFNHLLTTPAHEGRQPTQPRAIIMAPTRELAIQIYNDAEPLIASTGIK 114 Query 76 TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH 135 G+ + L D+LI T + ++ L +V+DE Sbjct 115 AALAYGGESYDKQL-TKLQGGVDVLIGTTGRIIDFY----KQRVFNLNNIQAVVLDEADR 169 >sp|A7MXT4|RHLB_VIBC1 ATP-dependent RNA helicase RhlB OS=Vibrio campbellii (strain ATCC BAA-1116) OX=2902295 GN=rhlB PE=3 SV=1 Length=437 Score = 180 bits (456), Expect = 8e-49, Method: Composition-based stats. Identities = 73/351 (21%), Positives = 129/351 (37%), Gaps = 62/351 (18%) Query 228 PFGDLLKKLMDQIHDHLEMPELS--RKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR 285 P +L ++ + + L +G + Y++Q+ KL + + R+ + + Sbjct 92 PTRELAIQIFNDAAPLIASTGLKAALAYGGESYDKQLAKLQDGVDILIGTTGRIIDFYKQ 151 Query 286 R-----YNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKN 336 R A+++ + R D L ++D ++ + RL LF R Sbjct 152 RVFNLNNIQAVVLDEADRMFD-LGFIKDIRFLFR----RMPEPKERLNMLFSATLSYRVQ 206 Query 337 ELAHLATHGPEN----PKLEMLEKILQRQFSSSNSP---------------RGIIFTRTR 377 ELA H PE+ P+ + +I + F SN R I+F T+ Sbjct 207 ELAFEHMHNPEHVVVEPEQKTGHRIQEELFYPSNEDKMALLQTLIEEEWPDRAIVFANTK 266 Query 378 QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA 437 S+ L R LL G + Q+ +++++++F G ++LLVA Sbjct 267 HKCESIW------GHLAADGHRVGLLTG--------DVPQKKREKILEQFTRGEVDLLVA 312 Query 438 TSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR---GRARADQSVYAFVATEGSRELKREL 494 T VA GL IP V + L + V GRA A +F + + L Sbjct 313 TDVAARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGASGHSISFACEDYAINLP--- 369 Query 495 INEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQ 545 +E +E A+ + + A I+DL + +R N Sbjct 370 ---PIEEYIEHAIP----VSDYDASALIQDLPAPLRMRAPRTQQRRTNTGG 413 Score = 37.5 bits (85), Expect = 0.47, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 37/120 (31%), Gaps = 15/120 (13%) Query 26 TGAGKTRAAAYVAKRHLETVDGA--------KVVVLVNRVHLVTQHGEEFRRML--DGRW 75 TG GKT A HL T + +++ L Q + ++ G Sbjct 55 TGTGKTLAFLTATFNHLLTTPEHEGRKPTQPRAIIMAPTRELAIQIFNDAAPLIASTGLK 114 Query 76 TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH 135 G+ + L D+LI T + ++ L +V+DE Sbjct 115 AALAYGGESYDKQL-AKLQDGVDILIGTTGRIIDFY----KQRVFNLNNIQAVVLDEADR 169 >sp|C3LQR1|RHLB_VIBCM ATP-dependent RNA helicase RhlB OS=Vibrio cholerae serotype O1 (strain M66-2) OX=579112 GN=rhlB PE=3 SV=1 Length=438 Score = 178 bits (450), Expect = 7e-48, Method: Composition-based stats. Identities = 78/348 (22%), Positives = 134/348 (39%), Gaps = 63/348 (18%) Query 228 PFGDLLKKLMDQIHDHLEMPELS--RKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR 285 P +L ++ + L L +G + Y++Q+ KL + R+ + + Sbjct 92 PTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLAKLQSGVDILIGTTGRIIDFYKQ 151 Query 286 R-----YNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKN 336 R + A+++ + R D L ++D ++ + RL LF R Sbjct 152 RVFNLNHIQAVVLDEADRMFD-LGFIKDIRFLFR----RMPEPKDRLNMLFSATLSYRVQ 206 Query 337 ELAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTR 377 ELA + PE+ P+ + +I + F SN R IIF T+ Sbjct 207 ELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQTLIEEEWPDRAIIFANTK 266 Query 378 QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA 437 + L + R LL G + Q+ ++ ++++F G +++LVA Sbjct 267 HRCEQIW------AHLAADNHRVGLLTG--------DVPQKKRERILEQFTQGDVDILVA 312 Query 438 TSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR---GRARADQSVYAFVATEGSRELKREL 494 T VA GL IP V Y L + V GRA A +F E + L Sbjct 313 TDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINLP--- 369 Query 495 INEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQREN 542 A+E+ +E A+ D + A + DL A L+ R++ +R N Sbjct 370 ---AIESYIEHAIPT-SDYDPS---ALLTDL-PAPLSLRSSPQQRRTN 409 Score = 38.6 bits (88), Expect = 0.16, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 38/120 (32%), Gaps = 15/120 (13%) Query 26 TGAGKTRAAAYVAKRHLETVDGA--------KVVVLVNRVHLVTQHGEEFRRML--DGRW 75 TG GKT A HL T A + +++ L Q + +L G Sbjct 55 TGTGKTLAFLTATFNHLLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLK 114 Query 76 TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH 135 G+ + L D+LI T + ++ L +V+DE Sbjct 115 AALAYGGESYDKQL-AKLQSGVDILIGTTGRIIDFY----KQRVFNLNHIQAVVLDEADR 169 >sp|Q9KV52|RHLB_VIBCH ATP-dependent RNA helicase RhlB OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) OX=243277 GN=rhlB PE=3 SV=1 Length=438 Score = 178 bits (450), Expect = 7e-48, Method: Composition-based stats. Identities = 78/348 (22%), Positives = 134/348 (39%), Gaps = 63/348 (18%) Query 228 PFGDLLKKLMDQIHDHLEMPELS--RKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR 285 P +L ++ + L L +G + Y++Q+ KL + R+ + + Sbjct 92 PTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLAKLQSGVDILIGTTGRIIDFYKQ 151 Query 286 R-----YNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKN 336 R + A+++ + R D L ++D ++ + RL LF R Sbjct 152 RVFNLNHIQAVVLDEADRMFD-LGFIKDIRFLFR----RMPEPKDRLNMLFSATLSYRVQ 206 Query 337 ELAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTR 377 ELA + PE+ P+ + +I + F SN R IIF T+ Sbjct 207 ELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQTLIEEEWPDRAIIFANTK 266 Query 378 QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA 437 + L + R LL G + Q+ ++ ++++F G +++LVA Sbjct 267 HRCEQIW------AHLAADNHRVGLLTG--------DVPQKKRERILEQFTQGDVDILVA 312 Query 438 TSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR---GRARADQSVYAFVATEGSRELKREL 494 T VA GL IP V Y L + V GRA A +F E + L Sbjct 313 TDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINLP--- 369 Query 495 INEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQREN 542 A+E+ +E A+ D + A + DL A L+ R++ +R N Sbjct 370 ---AIESYIEHAIPT-SDYDPS---ALLTDL-PAPLSLRSSPQQRRTN 409 Score = 38.6 bits (88), Expect = 0.16, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 38/120 (32%), Gaps = 15/120 (13%) Query 26 TGAGKTRAAAYVAKRHLETVDGA--------KVVVLVNRVHLVTQHGEEFRRML--DGRW 75 TG GKT A HL T A + +++ L Q + +L G Sbjct 55 TGTGKTLAFLTATFNHLLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLK 114 Query 76 TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH 135 G+ + L D+LI T + ++ L +V+DE Sbjct 115 AALAYGGESYDKQL-AKLQSGVDILIGTTGRIIDFY----KQRVFNLNHIQAVVLDEADR 169 >sp|A5F3R4|RHLB_VIBC3 ATP-dependent RNA helicase RhlB OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395) OX=345073 GN=rhlB PE=3 SV=1 Length=438 Score = 178 bits (450), Expect = 7e-48, Method: Composition-based stats. Identities = 78/348 (22%), Positives = 134/348 (39%), Gaps = 63/348 (18%) Query 228 PFGDLLKKLMDQIHDHLEMPELS--RKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR 285 P +L ++ + L L +G + Y++Q+ KL + R+ + + Sbjct 92 PTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLAKLQSGVDILIGTTGRIIDFYKQ 151 Query 286 R-----YNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKN 336 R + A+++ + R D L ++D ++ + RL LF R Sbjct 152 RVFNLNHIQAVVLDEADRMFD-LGFIKDIRFLFR----RMPEPKDRLNMLFSATLSYRVQ 206 Query 337 ELAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTR 377 ELA + PE+ P+ + +I + F SN R IIF T+ Sbjct 207 ELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQTLIEEEWPDRAIIFANTK 266 Query 378 QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA 437 + L + R LL G + Q+ ++ ++++F G +++LVA Sbjct 267 HRCEQIW------AHLAADNHRVGLLTG--------DVPQKKRERILEQFTQGDVDILVA 312 Query 438 TSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR---GRARADQSVYAFVATEGSRELKREL 494 T VA GL IP V Y L + V GRA A +F E + L Sbjct 313 TDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINLP--- 369 Query 495 INEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQREN 542 A+E+ +E A+ D + A + DL A L+ R++ +R N Sbjct 370 ---AIESYIEHAIPT-SDYDPS---ALLTDL-PAPLSLRSSPQQRRTN 409 Score = 38.6 bits (88), Expect = 0.16, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 38/120 (32%), Gaps = 15/120 (13%) Query 26 TGAGKTRAAAYVAKRHLETVDGA--------KVVVLVNRVHLVTQHGEEFRRML--DGRW 75 TG GKT A HL T A + +++ L Q + +L G Sbjct 55 TGTGKTLAFLTATFNHLLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLK 114 Query 76 TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH 135 G+ + L D+LI T + ++ L +V+DE Sbjct 115 AALAYGGESYDKQL-AKLQSGVDILIGTTGRIIDFY----KQRVFNLNHIQAVVLDEADR 169 >sp|B7VME9|RHLB_VIBA3 ATP-dependent RNA helicase RhlB OS=Vibrio atlanticus (strain LGP32) OX=575788 GN=rhlB PE=3 SV=1 Length=436 Score = 175 bits (444), Expect = 5e-47, Method: Composition-based stats. Identities = 79/409 (19%), Positives = 145/409 (35%), Gaps = 65/409 (16%) Query 171 GTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFG 230 G + + VL ++ L K R+ P Sbjct 28 GFDYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNHLLKTPEHEGRKPNQPRA 87 Query 231 DLL---KKLMDQIHDHLEMP------ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYA 281 ++ ++L QI++ + + + +G + Y++Q+ K+ E A + R+ Sbjct 88 IIMAPTRELAIQIYNDADSLVASTGIKAALAYGGESYDKQLGKIEEGADILIGTTGRIID 147 Query 282 LHLRR-----YNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD--- 333 + ++ + A+++ + R D L ++D ++ + RL LF Sbjct 148 FYKQKVFNLNHIQAVVLDEADRMFD-LGFIKDIRFLFR----RMPEPKDRLNMLFSATLS 202 Query 334 -RKNELAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIF 373 R ELA H PE+ P+ + +I + F SN R IIF Sbjct 203 YRVQELAFEHMHNPEHVVVEPERKTGHRIQEELFYPSNEHKMALLQTLIEEEWPDRAIIF 262 Query 374 TRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN 433 T+ S+ L R LL G + Q+ +++++++F G ++ Sbjct 263 ANTKHKCESVW------GHLAADGHRVGLLTG--------DVPQKKREKILEQFTKGDVD 308 Query 434 LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKR 492 LLVAT VA GL IP V + L + V GR RA +S ++ + Sbjct 309 LLVATDVAARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGESGHSISFACEDYAIN- 367 Query 493 ELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRE 541 +E +E A+ M + A + DL + +R Sbjct 368 ---LPPIEEYIEHAIP----MSDYDASALLEDLPAPMRLRTRNPQQRRS 409 Score = 37.5 bits (85), Expect = 0.37, Method: Composition-based stats. Identities = 21/120 (18%), Positives = 37/120 (31%), Gaps = 15/120 (13%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRR--MLDGRW 75 TG GKT A HL + + +++ L Q + G Sbjct 55 TGTGKTLAFLTATFNHLLKTPEHEGRKPNQPRAIIMAPTRELAIQIYNDADSLVASTGIK 114 Query 76 TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH 135 G+ + G + D+LI T + +++ L +V+DE Sbjct 115 AALAYGGESYDKQL-GKIEEGADILIGTTGRIIDFY----KQKVFNLNHIQAVVLDEADR 169 >sp|A4STJ7|RHLB_AERS4 ATP-dependent RNA helicase RhlB OS=Aeromonas salmonicida (strain A449) OX=382245 GN=rhlB PE=3 SV=1 Length=429 Score = 173 bits (439), Expect = 2e-46, Method: Composition-based stats. Identities = 71/340 (21%), Positives = 123/340 (36%), Gaps = 60/340 (18%) Query 247 PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND-----ALLIHDTVRAVD 301 +L +G + Y++Q+ L + + R+ + D +++ + R D Sbjct 113 LKLGLAYGGEGYDKQLAVLEQGVDILIGTTGRIIDYFKSKVIDLSNIQVVVLDEADRMFD 172 Query 302 ALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPEN----PKLEM 353 L ++D ++ RL LF R ELA+ + PE+ P+ Sbjct 173 -LGFIKDIRFLFR----RMPAPTERLSMLFSATLSLRVQELAYEHMNHPEHVQIEPEQMT 227 Query 354 LEKILQRQFSSSNSPR---------------GIIFTRTRQSAHSLLLWLQQQQGLQTVDI 398 +I + F SN + I+F T+ + WL+ Sbjct 228 GIRIQEELFYPSNEDKMLLLLSLMEEEWPEKAIVFANTKHVCEDVHAWLEN------DGH 281 Query 399 RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL 458 R LL G + Q+ + ++++ F GTL++LVAT VA GL IP V Y L Sbjct 282 RVGLLTG--------DVPQKKRMKILEDFTKGTLDILVATDVAARGLHIPDVTHVFNYDL 333 Query 459 LTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAE 517 + V GR RA +S ++ A+E + + V K D+ Sbjct 334 PDDAEDYVHRIGRTGRAGKSGHSISLACEDYAFN----LPAIEEYIHHPIP-VSKYDREA 388 Query 518 Y-------QAKIRDLQQAALTKRAAQAAQRENQRQQFPVE 550 + +R+ Q R Q N R++ P + Sbjct 389 LLDDVTAPKRVVRNRQPVNRNMRDRQGGGNSNNRRRPPRK 428 >sp|B5FF87|RHLB_ALIFM ATP-dependent RNA helicase RhlB OS=Aliivibrio fischeri (strain MJ11) OX=388396 GN=rhlB PE=3 SV=1 Length=432 Score = 173 bits (437), Expect = 4e-46, Method: Composition-based stats. Identities = 74/353 (21%), Positives = 128/353 (36%), Gaps = 62/353 (18%) Query 228 PFGDLLKKLMDQIHDHLEMPELS--RKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR 285 P +L ++ + + L +G + YE+Q + + + R+ + + Sbjct 92 PTRELAIQIFNDAESLIASTGLKAALAYGGERYEKQQQVIEQGVDILIGTTGRIIDFYKQ 151 Query 286 RYND-----ALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKN 336 + D A+++ + R D L ++D ++ RL LF R Sbjct 152 GHIDFKMIQAVVLDEADRMFD-LGFIKDIRF----IFRRMPAPTERLNMLFSATLSYRVQ 206 Query 337 ELAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTR 377 ELA PE+ P+ + +I + F SN R IIF T+ Sbjct 207 ELAFEHMQEPEHVVVEPEQKTGHRIKEELFYPSNDHKMALLQTLIEEEWPDRAIIFANTK 266 Query 378 QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA 437 S+ L R LL G + Q+ ++ ++++F G +++LVA Sbjct 267 HKCESVW------GHLAADKHRVGLLTG--------DVPQKKRERILEEFTQGNVDILVA 312 Query 438 TSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR---GRARADQSVYAFVATEGSRELKREL 494 T VA GL IP V + L V GRA A + +F E + L Sbjct 313 TDVAARGLHIPQVTHVFNFDLPNEAEDYVHRIGRTGRAGASGNSISFACEEYAINLP--- 369 Query 495 INEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQF 547 A+E +E ++ + A + DL +R Q +R N Q+ Sbjct 370 ---AIEEYIEHSIPQ----SDYDASALLEDLPAPLRLQRRPQQNRRNNNGQRQ 415 Score = 41.7 bits (96), Expect = 0.019, Method: Composition-based stats. Identities = 21/140 (15%), Positives = 45/140 (32%), Gaps = 17/140 (12%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVH 58 Q + + L G++I TG GKT A HL + + +++ Sbjct 36 QAKALPVLLAGQDIAGQAQTGTGKTLAFLTATFNHLLTTPAPEGRKITQPRAIIMAPTRE 95 Query 59 LVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPE 115 L Q D + + G + ++ ++L + Sbjct 96 LAIQ------IFNDAESLIASTGLKAALAYGGERYEKQQQVIEQGVDILIGTTGRIIDFY 149 Query 116 EEEHVELTVFSLIVVDECHH 135 ++ H++ + +V+DE Sbjct 150 KQGHIDFKMIQAVVLDEADR 169 >sp|Q5E8U5|RHLB_ALIF1 ATP-dependent RNA helicase RhlB OS=Aliivibrio fischeri (strain ATCC 700601 / ES114) OX=312309 GN=rhlB PE=3 SV=2 Length=432 Score = 172 bits (436), Expect = 4e-46, Method: Composition-based stats. Identities = 74/353 (21%), Positives = 128/353 (36%), Gaps = 62/353 (18%) Query 228 PFGDLLKKLMDQIHDHLEMPELS--RKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR 285 P +L ++ + + L +G + YE+Q + + + R+ + + Sbjct 92 PTRELAIQIFNDAESLIASTGLKAALAYGGERYEKQQQVIEQGVDILIGTTGRIIDFYKQ 151 Query 286 RYND-----ALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKN 336 + D A+++ + R D L ++D ++ RL LF R Sbjct 152 GHIDFKMIQAVVLDEADRMFD-LGFIKDIRF----IFRRMPAPTERLNMLFSATLSYRVQ 206 Query 337 ELAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTR 377 ELA PE+ P+ + +I + F SN R IIF T+ Sbjct 207 ELAFEHMQEPEHVVVEPEQKTGHRIKEELFYPSNDHKMALLQTLIEEEWPDRAIIFANTK 266 Query 378 QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA 437 S+ L R LL G + Q+ ++ ++++F G +++LVA Sbjct 267 HKCESVW------GHLAADKHRVGLLTG--------DVPQKKRERILEEFTQGNVDILVA 312 Query 438 TSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR---GRARADQSVYAFVATEGSRELKREL 494 T VA GL IP V + L V GRA A + +F E + L Sbjct 313 TDVAARGLHIPQVTHVFNFDLPNEAEDYVHRIGRTGRAGASGNSISFACEEYAINLP--- 369 Query 495 INEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQF 547 A+E +E ++ + A + DL +R Q +R N Q+ Sbjct 370 ---AIEEYIEHSIPQ----SDYDASALLEDLPAPLRLQRRPQQNRRNNNGQRQ 415 Score = 41.7 bits (96), Expect = 0.019, Method: Composition-based stats. Identities = 21/140 (15%), Positives = 45/140 (32%), Gaps = 17/140 (12%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVH 58 Q + + L G++I TG GKT A HL + + +++ Sbjct 36 QAKALPVLLAGQDIAGQAQTGTGKTLAFLTATFNHLLTTPAPEGRKITQPRAIIMAPTRE 95 Query 59 LVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPE 115 L Q D + + G + ++ ++L + Sbjct 96 LAIQ------IFNDAESLIASTGLKAALAYGGERYEKQQQVIEQGVDILIGTTGRIIDFY 149 Query 116 EEEHVELTVFSLIVVDECHH 135 ++ H++ + +V+DE Sbjct 150 KQGHIDFKMIQAVVLDEADR 169 >sp|A0KEG9|RHLB_AERHH ATP-dependent RNA helicase RhlB OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB 9240 / NCTC 8049) OX=380703 GN=rhlB PE=3 SV=1 Length=429 Score = 171 bits (434), Expect = 1e-45, Method: Composition-based stats. Identities = 71/340 (21%), Positives = 123/340 (36%), Gaps = 60/340 (18%) Query 247 PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND-----ALLIHDTVRAVD 301 +L +G + Y++Q+ L + + R+ + D +++ + R D Sbjct 113 LKLGLAYGGEGYDKQLAVLEQGVDILIGTTGRIIDYFKSKVIDLSNIQVVVLDEADRMFD 172 Query 302 ALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPEN----PKLEM 353 L ++D ++ A RL LF R ELA+ + PE+ P+ Sbjct 173 -LGFIKDIRFLFR----RMPPATERLSMLFSATLSLRVQELAYEHMNHPEHVQIEPEQMT 227 Query 354 LEKILQRQFSSSNSPR---------------GIIFTRTRQSAHSLLLWLQQQQGLQTVDI 398 +I + F SN + I+F T+ + WL+ Sbjct 228 GVRIKEELFYPSNEDKMLLLLSLMEEEWPEKAIVFANTKHVCEDVHAWLEN------DGH 281 Query 399 RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL 458 R LL G + Q+ + ++++ F GT+++LVAT VA GL IP V Y L Sbjct 282 RVGLLTG--------DVPQKKRMKILEDFTKGTVDILVATDVAARGLHIPDVTHVFNYDL 333 Query 459 LTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAE 517 + V GR RA +S ++ A+E + + V K D+ Sbjct 334 PDDAEDYVHRIGRTGRAGKSGHSISLACEDYAFN----LPAIEEYIHHPIP-VSKYDREA 388 Query 518 Y-------QAKIRDLQQAALTKRAAQAAQRENQRQQFPVE 550 + R+ Q R Q N R++ P + Sbjct 389 LLDDVTAPKRVFRNRQPVNRNMRDRQGGGNSNNRRRPPRK 428 Score = 40.9 bits (94), Expect = 0.035, Method: Composition-based stats. Identities = 25/121 (21%), Positives = 42/121 (35%), Gaps = 17/121 (14%) Query 26 TGAGKT--RAAAY---VAKRHL---ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV 77 TG GKT AA + L ++ + +++ L Q + M T Sbjct 55 TGTGKTLAFLAATFNYLLTHPLTKPRLINQPRAIIMAPTRELAVQIYNDAESMS--ASTG 112 Query 78 TTLSGDMGPRAGFGHLA---RCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECH 134 L G LA + D+LI T + S ++L+ ++V+DE Sbjct 113 LKLGLAYGGEGYDKQLAVLEQGVDILIGTTGRIIDYFKSKV----IDLSNIQVVVLDEAD 168 Query 135 H 135 Sbjct 169 R 169 >sp|Q2NQB2|RHLB_SODGM ATP-dependent RNA helicase RhlB OS=Sodalis glossinidius (strain morsitans) OX=343509 GN=rhlB PE=3 SV=1 Length=415 Score = 169 bits (428), Expect = 4e-45, Method: Composition-based stats. Identities = 70/329 (21%), Positives = 115/329 (35%), Gaps = 56/329 (17%) Query 247 PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN-----DALLIHDTVRAVD 301 ++ +G Y++Q+ L + R+ + Y +++ + R D Sbjct 113 LKMGLAYGGDGYDKQLKVLEAGVDILVGTTGRLIDYTKQNYVNMSAIQVVVLDEADRMFD 172 Query 302 ALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPENPKLEML--- 354 L ++D ++ A RL LF R ELA + E ++E L Sbjct 173 -LGFIKDIRWLFR----RMPAAAGRLNMLFSATLSYRVRELAFEHMNNAEYVEVEPLQKT 227 Query 355 -EKILQRQFSSSNS---------------PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI 398 +I + F SN R IIF T+ + L Sbjct 228 GHRIQEELFYPSNEEKMRLLQTLIEEEWPDRCIIFANTKHRCEDIW------GHLAADGH 281 Query 399 RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL 458 R LL G ++Q+ + +++KF G L++LVAT VA GL IP V Y L Sbjct 282 RVGLLTG--------DVSQKRRLRILEKFTQGALDILVATDVAARGLHIPSVTHVFNYDL 333 Query 459 LTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAE 517 + V GR RA +S + L A+E+ + + + Sbjct 334 PDDCEDYVHRIGRTGRAGESGCSISLACEEYALN----LTAIESYIGHQIPVSKYNS--- 386 Query 518 YQAKIRDLQQAALTKRAAQAAQRENQRQQ 546 A + DL R A R N+++ Sbjct 387 -DALLTDLPAPKRLTRRRSGAPRHNRKRP 414 Score = 50.2 bits (118), Expect = 5e-05, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV 77 TG GKT A HL + + +++ L Q D Sbjct 55 TGTGKTLAFLTATFHHLLTHPAAEGRQTNQPRALIMAPTRELAVQ------IHSDAEPLA 108 Query 78 TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH 134 MG G + +L ++L L ++ +V ++ ++V+DE Sbjct 109 QATGLKMGLAYGGDGYDKQLKVLEAGVDILVGTTGRLIDYTKQNYVNMSAIQVVVLDEAD 168 Query 135 H 135 Sbjct 169 R 169 >sp|C4LB49|RHLB_TOLAT ATP-dependent RNA helicase RhlB OS=Tolumonas auensis (strain DSM 9187 / NBRC 110442 / TA 4) OX=595494 GN=rhlB PE=3 SV=1 Length=425 Score = 169 bits (428), Expect = 6e-45, Method: Composition-based stats. Identities = 79/375 (21%), Positives = 135/375 (36%), Gaps = 62/375 (17%) Query 207 LQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVK 264 L HS ++ N P +L ++ + E ++ +G Y++Q+ Sbjct 71 LLTHSASAERRQNQPRVLIMAPTRELAVQIYNDAVPMSESCGFKMGLAYGGDGYDKQLAV 130 Query 265 LSEAAALAGLQEQRVYALHLRRYND-----ALLIHDTVRAVDALAALQDFYHREHVTKTQ 319 L E L R+ + D +++ + R D L ++D + Sbjct 131 LQEGVDLLIGTTGRIIDYLKQGIIDLGAIQVVVLDEADRMFD-LGFIKDIRFLFR----R 185 Query 320 ILCAERRLLALFDD----RKNELAHLATHGPEN----PKLEMLEKILQRQFSSSNSPR-- 369 + +RL LF R ELA+ + P++ P+ ++I + F SN + Sbjct 186 MPPPAQRLNMLFSATLSLRVQELAYEHMNEPQHIQIEPEQMTGQRIKEELFYPSNEDKML 245 Query 370 -------------GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT 416 IIF T+ + WLQ R LL G + Sbjct 246 LLLTLMEEDWPEKAIIFANTKHGCEDVHAWLQ------ADGHRVGLLTG--------DVP 291 Query 417 QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARAD 475 Q+ + ++++ F G L++LVAT VA GL IP + V Y L + V GR RA Sbjct 292 QKKRLKILEDFTAGLLDVLVATDVAARGLHIPDVSHVFNYDLPDDAEDYVHRIGRTGRAG 351 Query 476 QSVYA--FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKR 533 +S +A F + + L +E + V K D + A + D+ R Sbjct 352 RSGHAISFACEDYAFNLPE------IEEYTHHPIP-VSKYDPS---ALLDDVTAPKRVVR 401 Query 534 AAQAAQRENQRQQFP 548 R + +Q Sbjct 402 HRLPVNRNMRDRQST 416 Score = 48.3 bits (113), Expect = 2e-04, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 50/139 (36%), Gaps = 15/139 (11%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYV-AKRHL--------ETVDGAKVVVLVNRV 57 Q E I L GKNI TG GKT A +L + +V+++ Sbjct 36 QAETIPLLLTGKNIAGQAQTGTGKT-IAFLAGTFNYLLTHSASAERRQNQPRVLIMAPTR 94 Query 58 HLVTQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE 116 L Q + M + + + G G L DLLI T + L + Sbjct 95 ELAVQIYNDAVPMSESCGFKMGLAYGGDGYDKQLAVLQEGVDLLIGTTGRIIDYL----K 150 Query 117 EEHVELTVFSLIVVDECHH 135 + ++L ++V+DE Sbjct 151 QGIIDLGAIQVVVLDEADR 169 >sp|Q15N18|RHLB_PSEA6 ATP-dependent RNA helicase RhlB OS=Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087) OX=3042615 GN=rhlB PE=3 SV=1 Length=421 Score = 168 bits (425), Expect = 1e-44, Method: Composition-based stats. Identities = 74/369 (20%), Positives = 132/369 (36%), Gaps = 64/369 (17%) Query 211 SQQPCKQYNLCHRRSQDPFGDLLKKLMD--QIHDHLEMPELSRKFGTQMYEQQVVKLSEA 268 + QP K+ P +L ++ + ++ L +G + Y+ Q KL E Sbjct 74 NPQPTKKQPRA--IIMAPTRELAVQIFNDAELLSQHTGLSLGLIYGGEGYQSQREKLEEG 131 Query 269 AALAGLQEQRVYALHLRR-----YNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCA 323 + R+ + + ++ + R D L ++D + + ++ Sbjct 132 VDIIIGTTGRIIDYYKQNIFSLAGIQVAVLDEADRMFD-LGFIKDIRYLFN----RMPKP 186 Query 324 ERRLLALFDD----RKNELAHLATHGPEN----PKLEMLEKILQRQFSSSNSPR------ 369 RL LF R ELA+ P + P+ + +I + F S+ + Sbjct 187 TERLSMLFSATLSYRVQELAYEHMDNPTHVQVEPERKTGTRIKEELFYPSDEDKMALLLS 246 Query 370 ---------GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ 420 I+F T+ S + WLQ G S + Q + Sbjct 247 LMEEEWPDKAIVFANTKHSCEKVADWLQAD--------------GHRVGLLSGDVPQNKR 292 Query 421 QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR---GRARADQS 477 ++++ F G L++LVAT VA GL IP + V Y L + V GRA S Sbjct 293 LKILEDFTSGKLDILVATDVAARGLHIPMVSHVFNYDLPDDAEDYVHRIGRTGRAGQSGS 352 Query 478 VYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQA 537 +F + L A+ET +E A+ + + + A +RD+ + Sbjct 353 SISFACERYALNLP------AIETYIEHAIP----VTEYQADALLRDVTPPKPRHKKRMQ 402 Query 538 AQRENQRQQ 546 R Q++Q Sbjct 403 NGRNPQKRQ 411 Score = 35.5 bits (80), Expect = 1.6, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 48/138 (35%), Gaps = 16/138 (12%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA------KVVVLVNRVHLV 60 Q + P LEG +I TG GKT A VA H + + +++ L Sbjct 36 QALSLPPLLEGNDIAGQAQTGTGKT-IAFLVATFHYLLSNPQPTKKQPRAIIMAPTRELA 94 Query 61 TQ---HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE 117 Q E + ++ + G G ++ L D++I T + ++ Sbjct 95 VQIFNDAELLSQHTGL--SLGLIYGGEGYQSQREKLEEGVDIIIGTTGRIIDYY----KQ 148 Query 118 EHVELTVFSLIVVDECHH 135 L + V+DE Sbjct 149 NIFSLAGIQVAVLDEADR 166 >sp|Q65RG7|RHLB_MANSM ATP-dependent RNA helicase RhlB OS=Mannheimia succiniciproducens (strain KCTC 0769BP / MBEL55E) OX=221988 GN=rhlB PE=3 SV=1 Length=417 Score = 166 bits (421), Expect = 5e-44, Method: Composition-based stats. Identities = 77/356 (22%), Positives = 133/356 (37%), Gaps = 62/356 (17%) Query 228 PFGDLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR 285 P +L ++ ++ L +G Y++Q+ + A + R+ + Sbjct 88 PTRELAVQIAHDAERMVKTTGLKTALAYGGDGYDKQLKAIEAGADIIIGTTGRIIDYVKQ 147 Query 286 R-----YNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKN 336 + +++ + R D L ++D + + ++RL LF + Sbjct 148 NIIALSHIQVVVLDEADRMFD-LGFIKDIRY----LMRKCPSPKQRLTLLFSATLSYKVR 202 Query 337 ELAHLATHGPENPKLEML----EKILQRQFSSSNSP---------------RGIIFTRTR 377 ELA + PE ++E L +I + F SN R IIF T+ Sbjct 203 ELAFEDMNDPEYVEVEPLQKTGHRIKEELFYPSNEDKMPLLITLLEEEWPERCIIFANTK 262 Query 378 QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA 437 + +L R LL G + Q+ + ++++F DG L++LVA Sbjct 263 HQCEKIWGYL------AADGHRVGLLTG--------DVAQKKRLSLLKQFTDGALDILVA 308 Query 438 TSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSV--YAFVATEGSRELKREL 494 T VA GL IP V Y L + V GR RA +S +F E + L Sbjct 309 TDVAARGLHIPDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMNLP--- 365 Query 495 INEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVE 550 A+E + +A Q + + IRDL + K + A+ R N+ P + Sbjct 366 ---AIEEYIGHHIAVSQ----YDSDSLIRDLAKPYRLKPSLPASNRHNRNGAKPFK 414 Score = 35.9 bits (81), Expect = 1.3, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 38/116 (33%), Gaps = 11/116 (9%) Query 26 TGAGKTRAAAYVAKRHL----ETVDGAKVVVLVNRVHLVTQHGEEFRRM--LDGRWTVTT 79 TG GKT A HL + + +++ L Q + RM G T Sbjct 55 TGTGKTMAFLTATFHHLLEHPVKTNHPRALIMAPTRELAVQIAHDAERMVKTTGLKTALA 114 Query 80 LSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH 135 GD G+ + + + ++ + L+ ++V+DE Sbjct 115 YGGD-----GYDKQLKAIEAGADIIIGTTGRIIDYVKQNIIALSHIQVVVLDEADR 165 >sp|Q970I2|XPB2_SULTO DNA 3'-5' translocase XPB2 OS=Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) OX=273063 GN=xpb2 PE=1 SV=1 Length=439 Score = 166 bits (421), Expect = 7e-44, Method: Composition-based stats. Identities = 101/486 (21%), Positives = 168/486 (35%), Gaps = 132/486 (27%) Query 1 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKV--VVLVNRVH 58 +ELR YQ E + L+ K II LPTGAGKT+ A L+ V KV +++V + Sbjct 67 IELRDYQAEAVKAWLKEKRGIIVLPTGAGKTQVA-------LKIVSIMKVATLIVVPTID 119 Query 59 LVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEE 118 L+TQ E + L D P G + + T + A T EE Sbjct 120 LITQWKERINKYL-----------DFDPGIIGGGEDSLKGITVITYD---SAYTRAEELG 165 Query 119 HVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKL 178 F L++ DE HH + Y+++ + P LGLTA+P Sbjct 166 ----NKFPLLIFDEVHHLPSEG-YSIMAQLF---------ASPYRLGLTATPERDDG--- 208 Query 179 DGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMD 238 +H P + +R+S + Sbjct 209 ------------------------------KHELYPILVGPIVYRKSVEELAGKYIAKYK 238 Query 239 QIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVR 298 ++ + +K Y+ KL + + GL+ Q + Sbjct 239 IKKLYVSLTNEEKK----RYDGLRKKLKDFLSSRGLKLQNL------------------- 275 Query 299 AVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKIL 358 D +HR + A LLA + + + K+E L +IL Sbjct 276 ---------DDFHRLVKLAAKDKEAREALLAWHESLNIAVNSQS-------KIEKLREIL 319 Query 359 QRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQR 418 Q + + I+FTR Q A+ + LI Sbjct 320 QEY----KNEKIIVFTRDTQMAYRISK---------------TFLIPVVTYKTDKD---- 356 Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSV 478 +++E++QKF+DG ++VA++V +EG+D+P + + G + +Q GR + Sbjct 357 EREEILQKFRDGEYRVIVASTVFDEGVDVPDATLAIVMGGYGTKRQFLQRLGRILRKKDK 416 Query 479 YAFVAT 484 A + Sbjct 417 EALLIE 422 >sp|A1SZG4|RHLB_PSYIN ATP-dependent RNA helicase RhlB OS=Psychromonas ingrahamii (strain DSM 17664 / CCUG 51855 / 37) OX=357804 GN=rhlB PE=3 SV=1 Length=418 Score = 164 bits (416), Expect = 2e-43, Method: Composition-based stats. Identities = 82/423 (19%), Positives = 148/423 (35%), Gaps = 69/423 (16%) Query 163 VLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCH 222 + GLT S G + + + ++ L + Sbjct 21 ISGLT-SQGYEYCTPIQALSLPITLTGKDIAGQAQTGTGKTLAFLPAVFHHLLTNAQPEN 79 Query 223 RRSQDPFGDLL---KKLMDQIHD------HLEMPELSRKFGTQMYEQQVVKLSEAAALAG 273 RR P +L ++L QIH + L +G + E Q KL + + Sbjct 80 RRKNQPRAIILAPTRELAIQIHKDAMVLASMSNLRLGLAYGGEKVEIQRTKLEKGVDILI 139 Query 274 LQEQRVYALHLRRYND-----ALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLL 328 R + D ++++ + R D L ++D + ++ A+ RL Sbjct 140 GTTGRTIDFVKQGVIDMGSIQSVVLDEADRMFD-LGFIKDIRYLFR----RMPEAKSRLN 194 Query 329 ALFD----DRKNELAHLATHGPEN----PKLEMLEKILQRQFSSSNSPR----------- 369 LF + ELA + PE+ P++ I + F SN + Sbjct 195 MLFSATLSHKVQELAFEHMNDPESIQIEPEVMTSVNITEELFYPSNQDKILLLLSLIEED 254 Query 370 ----GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQ 425 I+F T+ + + +L +R LL G + Q + +++Q Sbjct 255 WPDKAIVFANTKHTCEKVWGYL------AGDGLRTGLLTG--------DVPQNKRLKILQ 300 Query 426 KFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVAT 484 +F DG +++LVAT VA GL IP + V + L + V GR RA + A Sbjct 301 QFTDGEIDILVATDVAARGLHIPKVSHVFNFDLPDDCEDYVHRIGRTGRAGEKGLAISFA 360 Query 485 EGSRELKRELIN-EALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR-EN 542 ++ + N A+E ++ + + + A + L +TK A R +N Sbjct 361 -----CEKYVFNLPAIEEYIKHPIP----CSEYDKNAMLDSLPVMKVTKYKAHPNSRKDN 411 Query 543 QRQ 545 + Sbjct 412 YHR 414 Score = 40.6 bits (93), Expect = 0.049, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 39/121 (32%), Gaps = 17/121 (14%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGE---EFRRMLDGR 74 TG GKT A HL + + ++L L Q + M + R Sbjct 55 TGTGKTLAFLPAVFHHLLTNAQPENRRKNQPRAIILAPTRELAIQIHKDAMVLASMSNLR 114 Query 75 WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECH 134 + G L + D+LI T + ++ +++ +V+DE Sbjct 115 LGLA--YGGEKVEIQRTKLEKGVDILIGTTGRTIDFV----KQGVIDMGSIQSVVLDEAD 168 Query 135 H 135 Sbjct 169 R 169 >sp|Q6LLL5|RHLB_PHOPR ATP-dependent RNA helicase RhlB OS=Photobacterium profundum (strain SS9) OX=298386 GN=rhlB PE=3 SV=1 Length=437 Score = 164 bits (415), Expect = 4e-43, Method: Composition-based stats. Identities = 70/333 (21%), Positives = 121/333 (36%), Gaps = 62/333 (19%) Query 247 PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND-----ALLIHDTVRAVD 301 + +G + YE+Q +E + R+ + +R D +++ + R D Sbjct 113 LKAGLAYGGEAYEKQQKVFAEGVDILIGTCGRIIDFYKQRVIDLASIQVVVLDEADRMFD 172 Query 302 ALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPENPKLE----- 352 L ++D ++ + RL LF R ELA + PE+ +E Sbjct 173 -LGFIKDIRFLFR----RMPAPKARLNMLFSATLSYRVKELAFEHMNSPESVVVEPNQKT 227 Query 353 --------------MLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI 398 ++LQ R IIF T+ + L + Sbjct 228 GHLIQEELFYPSNQEKMRLLQTLIEEEWPDRAIIFANTKHRCEDIW------GHLAADNH 281 Query 399 RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL 458 R LL G + Q+ + ++++F G +++LVAT VA GL IP V Y L Sbjct 282 RVGLLNG--------DVPQKKRVRILEQFTQGDIDILVATDVAARGLHIPQVTHVYNYDL 333 Query 459 LTNEISMVQARGR-ARADQSV--YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQ 515 + V GR RA +S +F E + L A+ET +E + + + Sbjct 334 PDDAEDYVHRIGRTGRAGESGSSISFACEEYAINLP------AIETYIEHPIPLSKYNSE 387 Query 516 AEYQAKIRDLQQAALTKRAAQA--AQRENQRQQ 546 A + +L +R + +R N +Q Sbjct 388 ----ALLDELPAPLRLQRTPRQGGNRRPNGNRQ 416 Score = 43.6 bits (101), Expect = 0.005, Method: Composition-based stats. Identities = 21/120 (18%), Positives = 40/120 (33%), Gaps = 15/120 (13%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRML--DGRW 75 TG GKT A +L + + +++ L Q + +L G Sbjct 55 TGTGKTLAFLTATFNYLLLNPASDERKTNQPRAIIMAPTRELAIQIYNDAAPLLASTGLK 114 Query 76 TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH 135 G+ + A D+LI T + ++ ++L ++V+DE Sbjct 115 AGLAYGGEAYEKQQ-KVFAEGVDILIGTCGRIIDFY----KQRVIDLASIQVVVLDEADR 169 >sp|C6DHF5|RHLB_PECCP ATP-dependent RNA helicase RhlB OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) OX=561230 GN=rhlB PE=3 SV=1 Length=430 Score = 162 bits (410), Expect = 2e-42, Method: Composition-based stats. Identities = 68/335 (20%), Positives = 114/335 (34%), Gaps = 56/335 (17%) Query 243 HLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN-----DALLIHDTV 297 HL +L +G Y++Q+ L + R+ + + +++ + Sbjct 109 HLTGLKLGLAYGGDGYDKQLKVLENGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168 Query 298 RAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPENPKLE- 352 R D L ++D ++ A +RL LF R ELA + E ++E Sbjct 169 RMYD-LGFIKDIRWLFR----RMPPAAQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEP 223 Query 353 ------------------MLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQ 394 ++LQ R IIF T+ + L Sbjct 224 EQKTGHRIKEELFYPSNEEKMRLLQTLLEEEWPDRCIIFANTKHRCEDIW------GHLA 277 Query 395 TVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV 454 R LL G + Q+ + ++++F G L++LVAT VA GL IP V Sbjct 278 ADGHRVGLLTG--------DVAQKKRLRILEEFTQGNLDILVATDVAARGLHIPSVTHVF 329 Query 455 RYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM 513 Y L + V GR RA QS ++ L A+ET + ++ + Sbjct 330 NYDLPDDCEDYVHRIGRTGRAGQSGFSISLACEEYALN----LPAIETYIGHSIPVSKYN 385 Query 514 DQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFP 548 A + DL R ++ + P Sbjct 386 S----DALMNDLPAPKRLTRPPRSNNGPRRHNNAP 416 Score = 43.2 bits (100), Expect = 0.006, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 45/133 (34%), Gaps = 17/133 (13%) Query 14 ALEGKNIIIWLPTGAGKTRAAAYVAKRHL---------ETVDGAKVVVLVNRVHLVTQHG 64 AL G+++ TG GKT A + H + + +++ L Q Sbjct 43 ALSGRDVAGQAQTGTGKTL-AFLASTFHYLLSHPANAERQTNQPRALIMAPTRELAVQIH 101 Query 65 EEFR--RMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 + L G GD + L D+LI T L ++ H+ L Sbjct 102 SDAEALSHLTGLKLGLAYGGDGYDKQL-KVLENGVDILIGTTGRLIDY----AKQNHINL 156 Query 123 TVFSLIVVDECHH 135 ++V+DE Sbjct 157 GAIQVVVLDEADR 169 >sp|Q0I1X0|RHLB_HISS1 ATP-dependent RNA helicase RhlB OS=Histophilus somni (strain 129Pt) OX=205914 GN=rhlB PE=3 SV=1 Length=419 Score = 161 bits (408), Expect = 3e-42, Method: Composition-based stats. Identities = 77/350 (22%), Positives = 136/350 (39%), Gaps = 62/350 (18%) Query 228 PFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR 285 P +L+ ++ + + ++ L +G + Y++Q+ + + + RV + Sbjct 90 PTRELVVQIANDANFLVQATGLKTGLAYGGEGYDKQLKVIDQGIDILIGTTGRVIDYVKQ 149 Query 286 R-----YNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKN 336 Y +++ + R D L ++D + + ++RL LF + Sbjct 150 GIIRLDYIQVVVLDEADRMFD-LGFIRDIRY----LLRKCPVPQQRLTMLFSATLSYKVR 204 Query 337 ELAHLATHGPENPKLEML----EKILQRQFSSSNSP---------------RGIIFTRTR 377 ELA + P+ ++E L +I + F SN R IIF+ T+ Sbjct 205 ELAFEHMNDPQYVEIEPLQKTGHRIREELFYPSNQDKMALLMTLLEEEWPERCIIFSNTK 264 Query 378 QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA 437 + +L R LL G + Q+ + ++++F DGTL++LVA Sbjct 265 HRCEEIWGYL------SADGHRVGLLTG--------DVMQKKRLSLLKQFTDGTLDILVA 310 Query 438 TSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSV--YAFVATEGSRELKREL 494 T VA GL IP V Y L + V GR RA +S +F E + L Sbjct 311 TDVAARGLHIPDVTHVFNYDLPDDCEDYVHRIGRTGRAGESGISISFACEEYAINLP--- 367 Query 495 INEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQR 544 A+E + ++ Q + +A I DL KR A ++ QR Sbjct 368 ---AIEEYIGHSIPVSQ----YDAKALIEDLPTPHRIKRGAFDSRSNLQR 410 Score = 46.7 bits (109), Expect = 6e-04, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 52/129 (40%), Gaps = 13/129 (10%) Query 15 LEGKNIIIWLPTGAGKTRAAAY-------VAKRHLETVDGAKVVVLVNRVHLVTQHGEEF 67 L+G++I TG GKT A + K ++ + + + ++L LV Q + Sbjct 44 LKGQDIAGQAQTGTGKT-IAFLTATFHHLLQKNNINSSEQPRALILAPTRELVVQIANDA 102 Query 68 RRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS 126 ++ T L+ G G + + D+LI T + + ++ + L Sbjct 103 NFLVQATGLKTGLAYGGEGYDKQLKVIDQGIDILIGTTGRVIDYV----KQGIIRLDYIQ 158 Query 127 LIVVDECHH 135 ++V+DE Sbjct 159 VVVLDEADR 167 >sp|B6EPA4|RHLB_ALISL ATP-dependent RNA helicase RhlB OS=Aliivibrio salmonicida (strain LFI1238) OX=316275 GN=rhlB PE=3 SV=1 Length=434 Score = 162 bits (409), Expect = 3e-42, Method: Composition-based stats. Identities = 83/430 (19%), Positives = 142/430 (33%), Gaps = 73/430 (17%) Query 161 PQVL-GLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYN 219 PQVL GL A G + + VL ++ L Sbjct 18 PQVLDGLNAK-GFINCTPIQAKALPVLLAGQDIAGQAQTGTGKTLAFLAATFNHLLTTPA 76 Query 220 LCHRRSQDPFGDLL---KKLMDQIHDHLEMP------ELSRKFGTQMYEQQVVKLSEAAA 270 R+ P ++ ++L QI++ E + + +G + YE+Q + Sbjct 77 PEGRKITQPRAIIMAPTRELAIQIYNDAESLIASTGLKAALAYGGERYEKQQKVIEAGVD 136 Query 271 LAGLQEQRVYALHLR-----RYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAER 325 + R+ + + + +++ + R D L ++D ++ Sbjct 137 ILIGTTGRIIDFYKQGQIDFKAIQVVVLDEADRMFD-LGFIKDIRF----VFRRMPAPAE 191 Query 326 RLLALFDD----RKNELAHLATHGPENPKLE-------------------MLEKILQRQF 362 RL LF R ELA PE+ +E +LQ Sbjct 192 RLNMLFSATLSYRVQELAFEHMQEPEHVVVEPDQKTGHLITEELFYPSNDHKMALLQTLI 251 Query 363 SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE 422 R IIF T+ + L R LL G + Q+ ++ Sbjct 252 EEEWPDRAIIFANTKHKCELVW------GHLAADKHRVGLLTG--------DVPQKKRER 297 Query 423 VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSV--Y 479 ++++F G +++LVAT VA GL IP V + L V GR RA +S Sbjct 298 ILEEFTKGEVDILVATDVAARGLHIPQVTHVFNFDLPNEAEDYVHRIGRTGRAGESGNSI 357 Query 480 AFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQ 539 +F E + L A+E +E ++ + A + DL +R + Sbjct 358 SFACEEYAINLP------AIEEYIEHSIPQ----SDYDTSALLEDLPAPIRLQRRPPQNR 407 Query 540 RE--NQRQQF 547 R N Q+ Sbjct 408 RNGSNNGQRQ 417 Score = 39.8 bits (91), Expect = 0.074, Method: Composition-based stats. Identities = 20/140 (14%), Positives = 44/140 (31%), Gaps = 17/140 (12%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVH 58 Q + + L G++I TG GKT A HL + + +++ Sbjct 36 QAKALPVLLAGQDIAGQAQTGTGKTLAFLAATFNHLLTTPAPEGRKITQPRAIIMAPTRE 95 Query 59 LVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPE 115 L Q D + + G + ++ ++L + Sbjct 96 LAIQ------IYNDAESLIASTGLKAALAYGGERYEKQQKVIEAGVDILIGTTGRIIDFY 149 Query 116 EEEHVELTVFSLIVVDECHH 135 ++ ++ ++V+DE Sbjct 150 KQGQIDFKAIQVVVLDEADR 169 >sp|Q6CZD9|RHLB_PECAS ATP-dependent RNA helicase RhlB OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) OX=218491 GN=rhlB PE=3 SV=3 Length=430 Score = 161 bits (408), Expect = 4e-42, Method: Composition-based stats. Identities = 66/335 (20%), Positives = 114/335 (34%), Gaps = 56/335 (17%) Query 243 HLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN-----DALLIHDTV 297 HL +L +G Y++Q+ L + R+ + + +++ + Sbjct 109 HLTGLKLGLAYGGDGYDKQLKVLENGVDILVGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168 Query 298 RAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPENPKLE- 352 R D L ++D ++ +RL LF R ELA + E ++E Sbjct 169 RMYD-LGFIKDIRWLFR----RMPATSQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEP 223 Query 353 ------------------MLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQ 394 ++LQ R IIF T+ + L Sbjct 224 EQKTGHRITEELFYPSNEEKMRLLQTLLEEEWPDRCIIFANTKHRCEDVW------GHLA 277 Query 395 TVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV 454 R LL G + Q+ + ++++F G++++LVAT VA GL IP V Sbjct 278 ADGHRVGLLTG--------DVAQKKRLRILEEFTQGSIDILVATDVAARGLHIPSVTHVF 329 Query 455 RYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM 513 Y L + V GR RA QS ++ L A+ET + + + Sbjct 330 NYDLPDDCEDYVHRIGRTGRAGQSGFSISLACEEYALN----LPAIETYIGHGIP----L 381 Query 514 DQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFP 548 + A + DL R ++ + P Sbjct 382 SKYNSDALMNDLPAPKRLTRPPRSNNGPRRHNSAP 416 Score = 44.0 bits (102), Expect = 0.004, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 39/121 (32%), Gaps = 17/121 (14%) Query 26 TGAGKTRAAAYVAKRHL---------ETVDGAKVVVLVNRVHLVTQHGEEFR--RMLDGR 74 TG GKT A + H + + +++ L Q + L G Sbjct 55 TGTGKTL-AFLASTFHYLLSHPANAERQTNQPRALIMAPTRELAVQIHSDAEALSHLTGL 113 Query 75 WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECH 134 GD + L D+L+ T L ++ H+ L ++V+DE Sbjct 114 KLGLAYGGDGYDKQL-KVLENGVDILVGTTGRLIDY----AKQNHINLGAIQVVVLDEAD 168 Query 135 H 135 Sbjct 169 R 169 >sp|B4F1V3|RHLB_PROMH ATP-dependent RNA helicase RhlB OS=Proteus mirabilis (strain HI4320) OX=529507 GN=rhlB PE=3 SV=1 Length=432 Score = 161 bits (406), Expect = 6e-42, Method: Composition-based stats. Identities = 68/337 (20%), Positives = 116/337 (34%), Gaps = 60/337 (18%) Query 248 ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN-----DALLIHDTVRAVDA 302 ++ +G Y++Q+ L+ + R+ + + +++ + R D Sbjct 114 KMGLAYGGDGYDEQLKVLNNGVDIVIGTTGRLIDYVKQGHINLNAIQVVVLDEADRMYD- 172 Query 303 LAALQDFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPENPKLE------ 352 L ++D ++ A R+ LF R ELA + PE ++E Sbjct 173 LGFIKDIRWLFR----RMPNAAERMNMLFSATLSYRVRELAFEQMNNPEYVEVEPEQKTG 228 Query 353 -------------MLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIR 399 ++LQ R IIF T+ + L R Sbjct 229 FSIKEELFYPSNEEKMRLLQTLIEEEWPERCIIFANTKHRCDDIW------AHLAADGHR 282 Query 400 AQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL 459 LL G + Q+ + +++ F G +++LVAT VA GL IP V Y L Sbjct 283 VGLLTG--------DVPQKKRLRILEDFTQGNIDILVATDVAARGLHIPSVTHVFNYDLP 334 Query 460 TNEISMVQARGR-ARADQSV--YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQA 516 + V GR RA +S + E + L A+ET ++ A+ + Sbjct 335 DDCEDYVHRIGRTGRAGKSGNSISLACEEYALNLP------AIETYIQHAIPVSKYNS-- 386 Query 517 EYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQ 553 A + DL + R Q R N + Q Sbjct 387 --DALLTDLPEPKRRHRPRQGQPRRNNSAPRRGNNTQ 421 Score = 42.5 bits (98), Expect = 0.010, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 45/130 (35%), Gaps = 13/130 (10%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA--------KVVVLVNRVHLVTQHGEE 66 ++G +I TG GKT A +L T + +++ L Q + Sbjct 44 VKGHDIAGQAQTGTGKTLAFLTSTFHYLLTHPAKEGHEKNQPRALIMAPTRELAVQIYTD 103 Query 67 FRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF 125 + + + G G L D++I T L + ++ H+ L Sbjct 104 AQPLAQSTGVKMGLAYGGDGYDEQLKVLNNGVDIVIGTTGRLIDYV----KQGHINLNAI 159 Query 126 SLIVVDECHH 135 ++V+DE Sbjct 160 QVVVLDEADR 169 >sp|B0UUZ9|RHLB_HISS2 ATP-dependent RNA helicase RhlB OS=Histophilus somni (strain 2336) OX=228400 GN=rhlB PE=3 SV=1 Length=419 Score = 160 bits (405), Expect = 8e-42, Method: Composition-based stats. Identities = 77/350 (22%), Positives = 135/350 (39%), Gaps = 62/350 (18%) Query 228 PFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR 285 P +L+ ++ + + ++ L +G + Y++Q+ + + RV + Sbjct 90 PTRELVVQIANDANFLVQATGLKTGLAYGGEGYDKQLKVIDRGIDILIGTTGRVIDYVKQ 149 Query 286 R-----YNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKN 336 Y +++ + R D L ++D + + ++RL LF + Sbjct 150 GIIRLDYIQVVVLDEADRMFD-LGFIRDIRY----LLRKCPVPQQRLTMLFSATLSYKVR 204 Query 337 ELAHLATHGPENPKLEML----EKILQRQFSSSNSP---------------RGIIFTRTR 377 ELA + P+ ++E L +I + F SN R IIF+ T+ Sbjct 205 ELAFEHMNDPQYVEIEPLQKTGHRIREELFYPSNQDKMALLMTLLEEEWPERCIIFSNTK 264 Query 378 QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA 437 + +L R LL G + Q+ + ++++F DGTL++LVA Sbjct 265 HRCEEIWGYL------SADGHRVGLLTG--------DVMQKKRLSLLKQFTDGTLDVLVA 310 Query 438 TSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSV--YAFVATEGSRELKREL 494 T VA GL IP V Y L + V GR RA +S +F E + L Sbjct 311 TDVAARGLHIPDVTHVFNYDLPDDCEDYVHRIGRTGRAGESGISISFACEEYAINLP--- 367 Query 495 INEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQR 544 A+E + ++ Q + +A I DL KR A ++ QR Sbjct 368 ---AIEEYIGHSIPVSQ----YDAKALIEDLPTPHRIKRGAFDSRSNLQR 410 Score = 47.1 bits (110), Expect = 4e-04, Method: Composition-based stats. Identities = 27/129 (21%), Positives = 52/129 (40%), Gaps = 13/129 (10%) Query 15 LEGKNIIIWLPTGAGKTRAAAY-------VAKRHLETVDGAKVVVLVNRVHLVTQHGEEF 67 L+G++I TG GKT A + K ++ + + + ++L LV Q + Sbjct 44 LKGQDIAGQAQTGTGKT-IAFLTATFHHLLQKNNINSSEQPRALILAPTRELVVQIANDA 102 Query 68 RRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS 126 ++ T L+ G G + R D+LI T + + ++ + L Sbjct 103 NFLVQATGLKTGLAYGGEGYDKQLKVIDRGIDILIGTTGRVIDYV----KQGIIRLDYIQ 158 Query 127 LIVVDECHH 135 ++V+DE Sbjct 159 VVVLDEADR 167 >sp|Q088J2|RHLB_SHEFN ATP-dependent RNA helicase RhlB OS=Shewanella frigidimarina (strain NCIMB 400) OX=318167 GN=rhlB PE=3 SV=1 Length=434 Score = 160 bits (404), Expect = 1e-41, Method: Composition-based stats. Identities = 65/318 (20%), Positives = 118/318 (37%), Gaps = 60/318 (19%) Query 253 FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR-----RYNDALLIHDTVRAVDALAALQ 307 +G + YE Q L + + R+ + + A+++ + R D L ++ Sbjct 119 YGGESYETQRAVLDKGVDILIGTTGRIIDYVRQGVISLSHIQAVVLDEADRMFD-LGFIK 177 Query 308 DFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPENPKLEMLE-------- 355 D ++ A+ RL LF + ELA+ + PE ++E LE Sbjct 178 DIRFLFR----RMPDAKSRLNMLFSATLSMKVQELAYDHMNDPEKVEIEPLEKTSKNIKE 233 Query 356 -----------KILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI 404 ++L + I+F+ T+ S L +L + R LL Sbjct 234 EIFYPSMEDKMRLLLSLIEEDWPDKAIVFSNTKHSCEKLWSYL------EGDGHRVGLLT 287 Query 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 G + Q+ + ++++F G +++LVAT VA GL I + V Y L + Sbjct 288 G--------DVPQKKRIRILEQFTSGEIDVLVATDVAARGLHISDVSHVYNYDLPDDCED 339 Query 465 MVQARGR-ARADQSV--YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK 521 V GR RA Q +F E + L +ET + ++ + + A Sbjct 340 YVHRIGRTGRAGQKGISISFACEEYALNLPE------IETYINHSIP----VSNYDKDAL 389 Query 522 IRDLQQAALTKRAAQAAQ 539 + D+ A R ++ Sbjct 390 LDDIPPPARIHRKPPTSR 407 Score = 42.5 bits (98), Expect = 0.010, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 37/121 (31%), Gaps = 17/121 (14%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQ---HGEEFRRMLDGR 74 TG GKT A HL + +++ L Q + + Sbjct 55 TGTGKTMAFLVATFNHLLNVAAPESRKATEPRAIIMAPTRELAIQIAKDAKLLAAHTGLK 114 Query 75 WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECH 134 V + G L + D+LI T + + + + L+ +V+DE Sbjct 115 --VGIVYGGESYETQRAVLDKGVDILIGTTGRIIDYV----RQGVISLSHIQAVVLDEAD 168 Query 135 H 135 Sbjct 169 R 169 >sp|A0KS84|RHLB_SHESA ATP-dependent RNA helicase RhlB OS=Shewanella sp. (strain ANA-3) OX=94122 GN=rhlB PE=3 SV=1 Length=439 Score = 159 bits (401), Expect = 4e-41, Method: Composition-based stats. Identities = 65/332 (20%), Positives = 118/332 (36%), Gaps = 60/332 (18%) Query 245 EMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR-----YNDALLIHDTVRA 299 ++ +G + Y+ Q L + + R+ + A+++ + R Sbjct 111 SHLKVGIVYGGESYDVQRKTLDQGVDILIGTTGRIIDYVRQGIINLGGIQAVVLDEADRM 170 Query 300 VDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPE-------- 347 D L ++D ++ A++RL LF + ELA+ + P Sbjct 171 FD-LGFIKDIRFLFR----RMPSADQRLNMLFSATLSMKVQELAYDHMNEPVKVEIAPEE 225 Query 348 -----------NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTV 396 P E ++L + I+F+ T+ S +L WL + Sbjct 226 KTSKNIKEEIFYPSQEDKMRLLLTLIEEDWPEKAIVFSNTKHSCENLWSWL------EGD 279 Query 397 DIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY 456 R LL G + Q+ + ++++F G L++LVAT VA GL I + V Y Sbjct 280 GHRVGLLTG--------DVPQKKRIRILEQFTQGQLDILVATDVAARGLHISDVSHVYNY 331 Query 457 GLLTNEISMVQARGR-ARADQSV--YAFVATEGSRELKRELINEALETLMEQAVAAVQKM 513 L + V GR RA +F E + L A+ET + ++ + Sbjct 332 DLPDDCEDYVHRIGRTGRAGNKGVSVSFACEEYALNLP------AIETYINHSIP----V 381 Query 514 DQAEYQAKIRDLQQAALTKRAAQAAQRENQRQ 545 + A + D+ R A R + + Sbjct 382 SNYDRDALLEDIPPPVKIHRRHPAGARNLRER 413 Score = 44.4 bits (103), Expect = 0.003, Method: Composition-based stats. Identities = 33/212 (16%), Positives = 62/212 (29%), Gaps = 19/212 (9%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGE-EFRRMLDGRWT 76 TG GKT A HL ++ + +++ L Q + Sbjct 55 TGTGKTMAFLVATFNHLLSTPVPENRQLNQPRAIIMAPTRELAIQIAKDAILLAKHSHLK 114 Query 77 VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHT 136 V + G L + D+LI T + + + + L +V+DE Sbjct 115 VGIVYGGESYDVQRKTLDQGVDILIGTTGRIIDYV----RQGIINLGGIQAVVLDEADR- 169 Query 137 HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWC 196 D + + Q L + T S + A +H+ + Sbjct 170 MFDLGFIKDIRFLFRRMPSADQRLNMLFSATLS-----MKVQELAYDHMNEPVKVEIAPE 224 Query 197 IMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 + +N ++ SQ+ + L P Sbjct 225 EKTSKNIKEEIFYPSQEDKMRLLLTLIEEDWP 256 >sp|A6VKC3|RHLB_ACTSZ ATP-dependent RNA helicase RhlB OS=Actinobacillus succinogenes (strain ATCC 55618 / DSM 22257 / CCUG 43843 / 130Z) OX=339671 GN=rhlB PE=3 SV=1 Length=413 Score = 158 bits (398), Expect = 5e-41, Method: Composition-based stats. Identities = 75/369 (20%), Positives = 129/369 (35%), Gaps = 62/369 (17%) Query 211 SQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELS--RKFGTQMYEQQVVKLSEA 268 + QP N P +L ++ + +L +G Y++Q+ + Sbjct 73 THQPDFITNQPRALILAPTRELAVQIAHDAESLAQTTKLRIALAYGGDGYDKQLKTIENG 132 Query 269 AALAGLQEQRVYAL---HLRRYNDA--LLIHDTVRAVDALAALQDFYHREHVTKTQILCA 323 + RV + R+ND +++ + R D L ++D + + Sbjct 133 VDILIGTTGRVIDYVKQGIIRFNDIQVVVLDEADRMFD-LGFIKDIRY----LLRKCPAP 187 Query 324 ERRLLALFDD----RKNELAHLATHGPENPKLEMLEK-------------------ILQR 360 + RL LF + ELA + PE ++E L+K +L Sbjct 188 KSRLTMLFSATLSYKVRELAFEDMNDPEYIEIEPLQKTGHRIKEELFYPSNRDKMALLMT 247 Query 361 QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ 420 R IIF T+ + +L R LL G + Q+ + Sbjct 248 LLEEEWPERCIIFANTKHRCEEIWGYL------AADGQRVGLLTG--------DVAQKKR 293 Query 421 QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSV- 478 ++++F DG L++LVAT VA GL IP V Y L + V GR RA +S Sbjct 294 LALLKQFTDGELDILVATDVAARGLHIPDVTHVFNYDLPDDREDYVHRIGRTGRAGESGM 353 Query 479 -YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQA 537 +F + + L A+E + + Q + + I DL + KR Sbjct 354 SISFACEQYAMNLP------AIEEYIGHHIPVSQ----YDPDSLINDLPKPYRIKRNHTI 403 Query 538 AQRENQRQQ 546 ++ Sbjct 404 PHSSRDYKK 412 Score = 41.3 bits (95), Expect = 0.026, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 38/117 (32%), Gaps = 11/117 (9%) Query 26 TGAGKTRAAAYVAKRHL------ETVDGAKVVVLVNRVHLVTQHGEEFRRML-DGRWTVT 78 TG GKT A HL + + ++L L Q + + + + Sbjct 55 TGTGKTMAFLTATFHHLLTHQPDFITNQPRALILAPTRELAVQIAHDAESLAQTTKLRIA 114 Query 79 TLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH 135 G G + D+LI T + + ++ + ++V+DE Sbjct 115 LAYGGDGYDKQLKTIENGVDILIGTTGRVIDYV----KQGIIRFNDIQVVVLDEADR 167 >sp|B1JQ11|RHLB_YERPY ATP-dependent RNA helicase RhlB OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) OX=502800 GN=rhlB PE=3 SV=1 Length=428 Score = 158 bits (399), Expect = 5e-41, Method: Composition-based stats. Identities = 68/331 (21%), Positives = 114/331 (34%), Gaps = 58/331 (18%) Query 247 PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN-----DALLIHDTVRAVD 301 +L +G Y++Q+ L + R+ + Y +++ + R D Sbjct 113 LKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYD 172 Query 302 ALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPENPKLEML--- 354 L ++D ++ ++RL LF R ELA + E ++E L Sbjct 173 -LGFIKDIRWLFR----RMPSVDKRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPLQKT 227 Query 355 -EKILQRQFSSSNS---------------PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI 398 +I + F SN R IIF T+ + L Sbjct 228 GHRIKEELFYPSNEEKMRLLQTLIEEEWPDRCIIFANTKHRCEEIW------GHLAADGH 281 Query 399 RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL 458 R LL G + Q+ + +++ F G L++LVAT VA GL IP V Y L Sbjct 282 RVGLLTG--------DVAQKKRLRILEDFTKGDLDILVATDVAARGLHIPLVTHVFNYDL 333 Query 459 LTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAE 517 + V GR RA +S ++ L A+ET ++ + Sbjct 334 PDDCEDYVHRIGRTGRAGESGHSISLACEEYALN----LPAIETYTGHSIPVSKYNS--- 386 Query 518 YQAKIRDLQQAALTKRAAQAA--QRENQRQQ 546 A + DL R +R + ++ Sbjct 387 -DALLTDLPAPKRLARTRTGNGPRRNSAPRR 416 Score = 44.4 bits (103), Expect = 0.003, Method: Composition-based stats. Identities = 19/121 (16%), Positives = 37/121 (31%), Gaps = 17/121 (14%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV 77 TG GKT A +L + + +++ L Q D Sbjct 55 TGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRALIMAPTRELAVQ------IHSDAESLS 108 Query 78 TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH 134 +G G + +L ++L L ++ ++ L ++V+DE Sbjct 109 QVTGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEAD 168 Query 135 H 135 Sbjct 169 R 169 >sp|Q66G19|RHLB_YERPS ATP-dependent RNA helicase RhlB OS=Yersinia pseudotuberculosis serotype I (strain IP32953) OX=273123 GN=rhlB PE=3 SV=1 Length=428 Score = 158 bits (399), Expect = 5e-41, Method: Composition-based stats. Identities = 68/331 (21%), Positives = 114/331 (34%), Gaps = 58/331 (18%) Query 247 PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN-----DALLIHDTVRAVD 301 +L +G Y++Q+ L + R+ + Y +++ + R D Sbjct 113 LKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYD 172 Query 302 ALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPENPKLEML--- 354 L ++D ++ ++RL LF R ELA + E ++E L Sbjct 173 -LGFIKDIRWLFR----RMPSVDKRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPLQKT 227 Query 355 -EKILQRQFSSSNS---------------PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI 398 +I + F SN R IIF T+ + L Sbjct 228 GHRIKEELFYPSNEEKMRLLQTLIEEEWPDRCIIFANTKHRCEEIW------GHLAADGH 281 Query 399 RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL 458 R LL G + Q+ + +++ F G L++LVAT VA GL IP V Y L Sbjct 282 RVGLLTG--------DVAQKKRLRILEDFTKGDLDILVATDVAARGLHIPLVTHVFNYDL 333 Query 459 LTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAE 517 + V GR RA +S ++ L A+ET ++ + Sbjct 334 PDDCEDYVHRIGRTGRAGESGHSISLACEEYALN----LPAIETYTGHSIPVSKYNS--- 386 Query 518 YQAKIRDLQQAALTKRAAQAA--QRENQRQQ 546 A + DL R +R + ++ Sbjct 387 -DALLTDLPAPKRLARTRTGNGPRRNSAPRR 416 Score = 44.4 bits (103), Expect = 0.003, Method: Composition-based stats. Identities = 19/121 (16%), Positives = 37/121 (31%), Gaps = 17/121 (14%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV 77 TG GKT A +L + + +++ L Q D Sbjct 55 TGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRALIMAPTRELAVQ------IHSDAESLS 108 Query 78 TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH 134 +G G + +L ++L L ++ ++ L ++V+DE Sbjct 109 QVTGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEAD 168 Query 135 H 135 Sbjct 169 R 169 >sp|A4TRC8|RHLB_YERPP ATP-dependent RNA helicase RhlB OS=Yersinia pestis (strain Pestoides F) OX=386656 GN=rhlB PE=3 SV=1 Length=428 Score = 158 bits (399), Expect = 5e-41, Method: Composition-based stats. Identities = 68/331 (21%), Positives = 114/331 (34%), Gaps = 58/331 (18%) Query 247 PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN-----DALLIHDTVRAVD 301 +L +G Y++Q+ L + R+ + Y +++ + R D Sbjct 113 LKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYD 172 Query 302 ALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPENPKLEML--- 354 L ++D ++ ++RL LF R ELA + E ++E L Sbjct 173 -LGFIKDIRWLFR----RMPSVDKRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPLQKT 227 Query 355 -EKILQRQFSSSNS---------------PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI 398 +I + F SN R IIF T+ + L Sbjct 228 GHRIKEELFYPSNEEKMRLLQTLIEEEWPDRCIIFANTKHRCEEIW------GHLAADGH 281 Query 399 RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL 458 R LL G + Q+ + +++ F G L++LVAT VA GL IP V Y L Sbjct 282 RVGLLTG--------DVAQKKRLRILEDFTKGDLDILVATDVAARGLHIPLVTHVFNYDL 333 Query 459 LTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAE 517 + V GR RA +S ++ L A+ET ++ + Sbjct 334 PDDCEDYVHRIGRTGRAGESGHSISLACEEYALN----LPAIETYTGHSIPVSKYNS--- 386 Query 518 YQAKIRDLQQAALTKRAAQAA--QRENQRQQ 546 A + DL R +R + ++ Sbjct 387 -DALLTDLPAPKRLARTRTGNGPRRNSAPRR 416 Score = 44.4 bits (103), Expect = 0.003, Method: Composition-based stats. Identities = 19/121 (16%), Positives = 37/121 (31%), Gaps = 17/121 (14%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV 77 TG GKT A +L + + +++ L Q D Sbjct 55 TGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRALIMAPTRELAVQ------IHSDAESLS 108 Query 78 TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH 134 +G G + +L ++L L ++ ++ L ++V+DE Sbjct 109 QVTGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEAD 168 Query 135 H 135 Sbjct 169 R 169 >sp|Q1CNK3|RHLB_YERPN ATP-dependent RNA helicase RhlB OS=Yersinia pestis bv. Antiqua (strain Nepal516) OX=377628 GN=rhlB PE=3 SV=1 Length=428 Score = 158 bits (399), Expect = 5e-41, Method: Composition-based stats. Identities = 68/331 (21%), Positives = 114/331 (34%), Gaps = 58/331 (18%) Query 247 PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN-----DALLIHDTVRAVD 301 +L +G Y++Q+ L + R+ + Y +++ + R D Sbjct 113 LKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYD 172 Query 302 ALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPENPKLEML--- 354 L ++D ++ ++RL LF R ELA + E ++E L Sbjct 173 -LGFIKDIRWLFR----RMPSVDKRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPLQKT 227 Query 355 -EKILQRQFSSSNS---------------PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI 398 +I + F SN R IIF T+ + L Sbjct 228 GHRIKEELFYPSNEEKMRLLQTLIEEEWPDRCIIFANTKHRCEEIW------GHLAADGH 281 Query 399 RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL 458 R LL G + Q+ + +++ F G L++LVAT VA GL IP V Y L Sbjct 282 RVGLLTG--------DVAQKKRLRILEDFTKGDLDILVATDVAARGLHIPLVTHVFNYDL 333 Query 459 LTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAE 517 + V GR RA +S ++ L A+ET ++ + Sbjct 334 PDDCEDYVHRIGRTGRAGESGHSISLACEEYALN----LPAIETYTGHSIPVSKYNS--- 386 Query 518 YQAKIRDLQQAALTKRAAQAA--QRENQRQQ 546 A + DL R +R + ++ Sbjct 387 -DALLTDLPAPKRLARTRTGNGPRRNSAPRR 416 Score = 44.4 bits (103), Expect = 0.003, Method: Composition-based stats. Identities = 19/121 (16%), Positives = 37/121 (31%), Gaps = 17/121 (14%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV 77 TG GKT A +L + + +++ L Q D Sbjct 55 TGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRALIMAPTRELAVQ------IHSDAESLS 108 Query 78 TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH 134 +G G + +L ++L L ++ ++ L ++V+DE Sbjct 109 QVTGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEAD 168 Query 135 H 135 Sbjct 169 R 169 >sp|Q8ZAD8|RHLB_YERPE ATP-dependent RNA helicase RhlB OS=Yersinia pestis OX=632 GN=rhlB PE=3 SV=1 Length=428 Score = 158 bits (399), Expect = 5e-41, Method: Composition-based stats. Identities = 68/331 (21%), Positives = 114/331 (34%), Gaps = 58/331 (18%) Query 247 PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN-----DALLIHDTVRAVD 301 +L +G Y++Q+ L + R+ + Y +++ + R D Sbjct 113 LKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYD 172 Query 302 ALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPENPKLEML--- 354 L ++D ++ ++RL LF R ELA + E ++E L Sbjct 173 -LGFIKDIRWLFR----RMPSVDKRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPLQKT 227 Query 355 -EKILQRQFSSSNS---------------PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI 398 +I + F SN R IIF T+ + L Sbjct 228 GHRIKEELFYPSNEEKMRLLQTLIEEEWPDRCIIFANTKHRCEEIW------GHLAADGH 281 Query 399 RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL 458 R LL G + Q+ + +++ F G L++LVAT VA GL IP V Y L Sbjct 282 RVGLLTG--------DVAQKKRLRILEDFTKGDLDILVATDVAARGLHIPLVTHVFNYDL 333 Query 459 LTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAE 517 + V GR RA +S ++ L A+ET ++ + Sbjct 334 PDDCEDYVHRIGRTGRAGESGHSISLACEEYALN----LPAIETYTGHSIPVSKYNS--- 386 Query 518 YQAKIRDLQQAALTKRAAQAA--QRENQRQQ 546 A + DL R +R + ++ Sbjct 387 -DALLTDLPAPKRLARTRTGNGPRRNSAPRR 416 Score = 44.4 bits (103), Expect = 0.003, Method: Composition-based stats. Identities = 19/121 (16%), Positives = 37/121 (31%), Gaps = 17/121 (14%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV 77 TG GKT A +L + + +++ L Q D Sbjct 55 TGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRALIMAPTRELAVQ------IHSDAESLS 108 Query 78 TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH 134 +G G + +L ++L L ++ ++ L ++V+DE Sbjct 109 QVTGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEAD 168 Query 135 H 135 Sbjct 169 R 169 >sp|B2K046|RHLB_YERPB ATP-dependent RNA helicase RhlB OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) OX=502801 GN=rhlB PE=3 SV=1 Length=428 Score = 158 bits (399), Expect = 5e-41, Method: Composition-based stats. Identities = 68/331 (21%), Positives = 114/331 (34%), Gaps = 58/331 (18%) Query 247 PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN-----DALLIHDTVRAVD 301 +L +G Y++Q+ L + R+ + Y +++ + R D Sbjct 113 LKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYD 172 Query 302 ALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPENPKLEML--- 354 L ++D ++ ++RL LF R ELA + E ++E L Sbjct 173 -LGFIKDIRWLFR----RMPSVDKRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPLQKT 227 Query 355 -EKILQRQFSSSNS---------------PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI 398 +I + F SN R IIF T+ + L Sbjct 228 GHRIKEELFYPSNEEKMRLLQTLIEEEWPDRCIIFANTKHRCEEIW------GHLAADGH 281 Query 399 RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL 458 R LL G + Q+ + +++ F G L++LVAT VA GL IP V Y L Sbjct 282 RVGLLTG--------DVAQKKRLRILEDFTKGDLDILVATDVAARGLHIPLVTHVFNYDL 333 Query 459 LTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAE 517 + V GR RA +S ++ L A+ET ++ + Sbjct 334 PDDCEDYVHRIGRTGRAGESGHSISLACEEYALN----LPAIETYTGHSIPVSKYNS--- 386 Query 518 YQAKIRDLQQAALTKRAAQAA--QRENQRQQ 546 A + DL R +R + ++ Sbjct 387 -DALLTDLPAPKRLARTRTGNGPRRNSAPRR 416 Score = 44.4 bits (103), Expect = 0.003, Method: Composition-based stats. Identities = 19/121 (16%), Positives = 37/121 (31%), Gaps = 17/121 (14%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV 77 TG GKT A +L + + +++ L Q D Sbjct 55 TGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRALIMAPTRELAVQ------IHSDAESLS 108 Query 78 TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH 134 +G G + +L ++L L ++ ++ L ++V+DE Sbjct 109 QVTGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEAD 168 Query 135 H 135 Sbjct 169 R 169 >sp|Q1CBQ4|RHLB_YERPA ATP-dependent RNA helicase RhlB OS=Yersinia pestis bv. Antiqua (strain Antiqua) OX=360102 GN=rhlB PE=3 SV=1 Length=428 Score = 158 bits (399), Expect = 5e-41, Method: Composition-based stats. Identities = 68/331 (21%), Positives = 114/331 (34%), Gaps = 58/331 (18%) Query 247 PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN-----DALLIHDTVRAVD 301 +L +G Y++Q+ L + R+ + Y +++ + R D Sbjct 113 LKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYD 172 Query 302 ALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPENPKLEML--- 354 L ++D ++ ++RL LF R ELA + E ++E L Sbjct 173 -LGFIKDIRWLFR----RMPSVDKRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPLQKT 227 Query 355 -EKILQRQFSSSNS---------------PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI 398 +I + F SN R IIF T+ + L Sbjct 228 GHRIKEELFYPSNEEKMRLLQTLIEEEWPDRCIIFANTKHRCEEIW------GHLAADGH 281 Query 399 RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL 458 R LL G + Q+ + +++ F G L++LVAT VA GL IP V Y L Sbjct 282 RVGLLTG--------DVAQKKRLRILEDFTKGDLDILVATDVAARGLHIPLVTHVFNYDL 333 Query 459 LTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAE 517 + V GR RA +S ++ L A+ET ++ + Sbjct 334 PDDCEDYVHRIGRTGRAGESGHSISLACEEYALN----LPAIETYTGHSIPVSKYNS--- 386 Query 518 YQAKIRDLQQAALTKRAAQAA--QRENQRQQ 546 A + DL R +R + ++ Sbjct 387 -DALLTDLPAPKRLARTRTGNGPRRNSAPRR 416 Score = 44.4 bits (103), Expect = 0.003, Method: Composition-based stats. Identities = 19/121 (16%), Positives = 37/121 (31%), Gaps = 17/121 (14%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV 77 TG GKT A +L + + +++ L Q D Sbjct 55 TGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRALIMAPTRELAVQ------IHSDAESLS 108 Query 78 TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH 134 +G G + +L ++L L ++ ++ L ++V+DE Sbjct 109 QVTGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEAD 168 Query 135 H 135 Sbjct 169 R 169 >sp|A7FD47|RHLB_YERP3 ATP-dependent RNA helicase RhlB OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) OX=349747 GN=rhlB PE=3 SV=1 Length=428 Score = 158 bits (399), Expect = 5e-41, Method: Composition-based stats. Identities = 68/331 (21%), Positives = 114/331 (34%), Gaps = 58/331 (18%) Query 247 PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN-----DALLIHDTVRAVD 301 +L +G Y++Q+ L + R+ + Y +++ + R D Sbjct 113 LKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYD 172 Query 302 ALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPENPKLEML--- 354 L ++D ++ ++RL LF R ELA + E ++E L Sbjct 173 -LGFIKDIRWLFR----RMPSVDKRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPLQKT 227 Query 355 -EKILQRQFSSSNS---------------PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI 398 +I + F SN R IIF T+ + L Sbjct 228 GHRIKEELFYPSNEEKMRLLQTLIEEEWPDRCIIFANTKHRCEEIW------GHLAADGH 281 Query 399 RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL 458 R LL G + Q+ + +++ F G L++LVAT VA GL IP V Y L Sbjct 282 RVGLLTG--------DVAQKKRLRILEDFTKGDLDILVATDVAARGLHIPLVTHVFNYDL 333 Query 459 LTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAE 517 + V GR RA +S ++ L A+ET ++ + Sbjct 334 PDDCEDYVHRIGRTGRAGESGHSISLACEEYALN----LPAIETYTGHSIPVSKYNS--- 386 Query 518 YQAKIRDLQQAALTKRAAQAA--QRENQRQQ 546 A + DL R +R + ++ Sbjct 387 -DALLTDLPAPKRLARTRTGNGPRRNSAPRR 416 Score = 44.4 bits (103), Expect = 0.003, Method: Composition-based stats. Identities = 19/121 (16%), Positives = 37/121 (31%), Gaps = 17/121 (14%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV 77 TG GKT A +L + + +++ L Q D Sbjct 55 TGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRALIMAPTRELAVQ------IHSDAESLS 108 Query 78 TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH 134 +G G + +L ++L L ++ ++ L ++V+DE Sbjct 109 QVTGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEAD 168 Query 135 H 135 Sbjct 169 R 169 >sp|Q7MYL2|RHLB_PHOLL ATP-dependent RNA helicase RhlB OS=Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01) OX=243265 GN=rhlB PE=3 SV=1 Length=428 Score = 158 bits (399), Expect = 5e-41, Method: Composition-based stats. Identities = 70/379 (18%), Positives = 128/379 (34%), Gaps = 61/379 (16%) Query 207 LQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVK 264 L H +Q N P +L ++ D + ++ +G Y++Q+ Sbjct 71 LLTHPAAEERQTNQPRALIMAPTRELAVQIYSDAEDLAQATGLKMGLAYGGDGYDKQLKI 130 Query 265 LSEAAALAGLQEQRVYALHLRRY-----NDALLIHDTVRAVDALAALQDFYHREHVTKTQ 319 L + R+ + + +++ + R D L ++D + Sbjct 131 LESGVDILIGTTGRLIDYTKQGHINLNAVQVVVLDEADRMYD-LGFIKDIRWLFR----R 185 Query 320 ILCAERRLLALFDD----RKNELAHLATHGPENPKLEMLE-------------------K 356 + R+ LF R ELA + E ++E L+ + Sbjct 186 MPPVNERMNLLFSATLSYRVRELAFEQMNHAEYIEVEPLQKTGHRIREELFYPSNEEKMR 245 Query 357 ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT 416 +LQ R IIF T+ + L R LL G + Sbjct 246 LLQTLLEEEWPDRCIIFANTKHRCEDIW------AHLAADGHRVGLLTG--------DVA 291 Query 417 QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARAD 475 Q+ + ++++F +G +++LVAT VA GL IP V Y L + V GR RA Sbjct 292 QKKRLRILEEFSNGNIDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAG 351 Query 476 QSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAA 535 +S ++ L A+E ++ ++ + QA ++DL R+ Sbjct 352 ESGHSISLACEEYALN----LPAIEDYIQHSIPVSKYNS----QALLKDLPAPKRRYRSR 403 Query 536 QAAQ--REN-QRQQFPVEH 551 R N + + Sbjct 404 SGNHQRRNNLSHRNNTPRN 422 Score = 44.0 bits (102), Expect = 0.004, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 37/122 (30%), Gaps = 19/122 (16%) Query 26 TGAGKTRAAAYVAKRHL---------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWT 76 TG GKT A + H + + +++ L Q D Sbjct 55 TGTGKTL-AFLASAFHYLLTHPAAEERQTNQPRALIMAPTRELAVQ------IYSDAEDL 107 Query 77 VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDEC 133 MG G + +L ++L L ++ H+ L ++V+DE Sbjct 108 AQATGLKMGLAYGGDGYDKQLKILESGVDILIGTTGRLIDYTKQGHINLNAVQVVVLDEA 167 Query 134 HH 135 Sbjct 168 DR 169 >sp|Q0HQL1|RHLB_SHESR ATP-dependent RNA helicase RhlB OS=Shewanella sp. (strain MR-7) OX=60481 GN=rhlB PE=3 SV=1 Length=439 Score = 158 bits (400), Expect = 5e-41, Method: Composition-based stats. Identities = 64/324 (20%), Positives = 116/324 (36%), Gaps = 60/324 (19%) Query 253 FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR-----RYNDALLIHDTVRAVDALAALQ 307 +G + Y+ Q L + + R+ + A+++ + R D L ++ Sbjct 119 YGGESYDVQRKVLDQGVDILIGTTGRIIDYVRQGIISLNAIQAVVLDEADRMFD-LGFIK 177 Query 308 DFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPE---------------- 347 D ++ A++RL LF + ELA+ + P Sbjct 178 DIRFLFR----RMPNADQRLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSKNIKE 233 Query 348 ---NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI 404 P E ++L + I+F+ T+ S +L WL + R LL Sbjct 234 EIFYPSQEDKIRLLLTLIEEDWPEKAIVFSNTKHSCENLWSWL------EGDGHRVGLLT 287 Query 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 G + Q+ + ++++F G L++LVAT VA GL I + V Y L + Sbjct 288 G--------DVPQKKRIRILEQFTQGQLDILVATDVAARGLHISDVSHVYNYDLPDDCED 339 Query 465 MVQARGR-ARADQSV--YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK 521 V GR RA +F E + L A+E+ + ++ + + A Sbjct 340 YVHRIGRTGRAGNKGVSVSFACEEYALNLP------AIESYINHSIP----VSNYDRDAL 389 Query 522 IRDLQQAALTKRAAQAAQRENQRQ 545 + D+ R A R + + Sbjct 390 LDDIPPPVKIHRKHPAGARNLRER 413 Score = 44.0 bits (102), Expect = 0.004, Method: Composition-based stats. Identities = 21/119 (18%), Positives = 37/119 (31%), Gaps = 13/119 (11%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGE-EFRRMLDGRWT 76 TG GKT A HL ++ + +++ L Q + Sbjct 55 TGTGKTMAFLVATFNHLLSTPIPENRQLNQPRAIIMAPTRELAIQIAKDAILLAKHTHLK 114 Query 77 VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH 135 V + G L + D+LI T + + + + L +V+DE Sbjct 115 VGIVYGGESYDVQRKVLDQGVDILIGTTGRIIDYV----RQGIISLNAIQAVVLDEADR 169 >sp|Q0HN76|RHLB_SHESM ATP-dependent RNA helicase RhlB OS=Shewanella sp. (strain MR-4) OX=60480 GN=rhlB PE=3 SV=1 Length=439 Score = 158 bits (400), Expect = 5e-41, Method: Composition-based stats. Identities = 64/324 (20%), Positives = 116/324 (36%), Gaps = 60/324 (19%) Query 253 FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR-----RYNDALLIHDTVRAVDALAALQ 307 +G + Y+ Q L + + R+ + A+++ + R D L ++ Sbjct 119 YGGESYDVQRKVLDQGVDILIGTTGRIIDYVRQGIISLNAIQAVVLDEADRMFD-LGFIK 177 Query 308 DFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPE---------------- 347 D ++ A++RL LF + ELA+ + P Sbjct 178 DIRFLFR----RMPNADQRLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSKNIKE 233 Query 348 ---NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI 404 P E ++L + I+F+ T+ S +L WL + R LL Sbjct 234 EIFYPSQEDKIRLLLTLIEEDWPEKAIVFSNTKHSCENLWSWL------EGDGHRVGLLT 287 Query 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 G + Q+ + ++++F G L++LVAT VA GL I + V Y L + Sbjct 288 G--------DVPQKKRIRILEQFTQGQLDILVATDVAARGLHISDVSHVYNYDLPDDCED 339 Query 465 MVQARGR-ARADQSV--YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK 521 V GR RA +F E + L A+E+ + ++ + + A Sbjct 340 YVHRIGRTGRAGNKGVSVSFACEEYALNLP------AIESYINHSIP----VSNYDRDAL 389 Query 522 IRDLQQAALTKRAAQAAQRENQRQ 545 + D+ R A R + + Sbjct 390 LDDIPPPVKIHRKHPAGARNLRER 413 Score = 44.0 bits (102), Expect = 0.004, Method: Composition-based stats. Identities = 21/119 (18%), Positives = 37/119 (31%), Gaps = 13/119 (11%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGE-EFRRMLDGRWT 76 TG GKT A HL ++ + +++ L Q + Sbjct 55 TGTGKTMAFLVATFNHLLSTPIPENRQLNQPRAIIMAPTRELAIQIAKDAILLAKHTHLK 114 Query 77 VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH 135 V + G L + D+LI T + + + + L +V+DE Sbjct 115 VGIVYGGESYDVQRKVLDQGVDILIGTTGRIIDYV----RQGIISLNAIQAVVLDEADR 169 >sp|Q8EJQ5|RHLB_SHEON ATP-dependent RNA helicase RhlB OS=Shewanella oneidensis (strain ATCC 700550 / JCM 31522 / CIP 106686 / LMG 19005 / NCIMB 14063 / MR-1) OX=211586 GN=rhlB PE=3 SV=1 Length=439 Score = 158 bits (399), Expect = 7e-41, Method: Composition-based stats. Identities = 65/324 (20%), Positives = 116/324 (36%), Gaps = 60/324 (19%) Query 253 FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR-----RYNDALLIHDTVRAVDALAALQ 307 +G + Y+ Q L + + R+ + A+++ + R D L ++ Sbjct 119 YGGESYDVQRKVLDQGVDILIGTTGRIIDYVRQGIINLNAIQAVVLDEADRMFD-LGFIK 177 Query 308 DFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPE---------------- 347 D ++ A++RL LF + ELA+ + P Sbjct 178 DIRFLFR----RMPNADQRLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSKNIKE 233 Query 348 ---NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI 404 P E ++L + I+F+ T+ S +L WL + R LL Sbjct 234 EIFYPSQEDKMRLLLTLIEEDWPEKAIVFSNTKHSCENLWSWL------EGDGHRVGLLT 287 Query 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 G + Q+ + ++++F G L++LVAT VA GL I + V Y L + Sbjct 288 G--------DVPQKKRIRILEQFTQGQLDILVATDVAARGLHISDVSHVYNYDLPDDCED 339 Query 465 MVQARGR-ARADQSV--YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK 521 V GR RA +F E + L A+ET + ++ + + A Sbjct 340 YVHRIGRTGRAGNKGVSVSFACEEYALNLP------AIETYINHSIP----VSNYDRDAL 389 Query 522 IRDLQQAALTKRAAQAAQRENQRQ 545 + D+ R A R + + Sbjct 390 LDDIPSPVKIHRKHPAGARNLRER 413 Score = 44.4 bits (103), Expect = 0.003, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 38/119 (32%), Gaps = 13/119 (11%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGE-EFRRMLDGRWT 76 TG GKT A HL ++ + +++ L Q + R Sbjct 55 TGTGKTMAFLVATFNHLLSSSIPEGRQLNQPRAIIMAPTRELAIQIAKDAILLAKHTRLK 114 Query 77 VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH 135 V + G L + D+LI T + + + + L +V+DE Sbjct 115 VGIVYGGESYDVQRKVLDQGVDILIGTTGRIIDYV----RQGIINLNAIQAVVLDEADR 169 >sp|B0TJ29|RHLB_SHEHH ATP-dependent RNA helicase RhlB OS=Shewanella halifaxensis (strain HAW-EB4) OX=458817 GN=rhlB PE=3 SV=1 Length=436 Score = 156 bits (395), Expect = 2e-40, Method: Composition-based stats. Identities = 65/324 (20%), Positives = 117/324 (36%), Gaps = 60/324 (19%) Query 253 FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR-----RYNDALLIHDTVRAVDALAALQ 307 +G + YE Q L + + R+ + A+++ + R D L ++ Sbjct 119 YGGEGYEVQRKVLDKGVDILIGTTGRIIDYVRQGVINVSCIQAVVLDEADRMFD-LGFIK 177 Query 308 DFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPE---------------- 347 D ++ A+ RL LF + ELA+ + PE Sbjct 178 DIRFLFR----RMPDAKSRLNMLFSATLSMKVQELAYDHMNEPEKVEIAPNEKTSKNIKE 233 Query 348 ---NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI 404 P +E +L + I+F+ T+ S + WL + RA LL Sbjct 234 EIFYPSMEEKMPLLLSLLEEDWPEKAIVFSNTKHSCEKVWSWL------EGDGHRAGLLT 287 Query 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 G + Q+ + ++++F G +++LVAT VA GL I + V Y L + Sbjct 288 G--------DVPQKKRLRILEQFTKGEIDILVATDVAARGLHIADVSHVYNYDLPDDCED 339 Query 465 MVQARGR-ARADQSV--YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK 521 V GR RA Q +F E + L A+E+ ++ ++ + + A Sbjct 340 YVHRIGRTGRAGQKGISVSFACEEYALNLP------AIESYIQHSIP----VTSYDSDAL 389 Query 522 IRDLQQAALTKRAAQAAQRENQRQ 545 + D+ R R + + Sbjct 390 LDDIPPPVRIHRKPSTHTRNTRDR 413 Score = 45.2 bits (105), Expect = 0.002, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 40/121 (33%), Gaps = 17/121 (14%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQ---HGEEFRRMLDGR 74 TG GKT A HL ++ + +++ L Q + + Sbjct 55 TGTGKTLAFLVATFNHLLSTPIPAERQLNQPRAIIMAPTRELAIQIAKDANLLAKHTGLK 114 Query 75 WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECH 134 V + G G L + D+LI T + + + + ++ +V+DE Sbjct 115 --VGIVYGGEGYEVQRKVLDKGVDILIGTTGRIIDYV----RQGVINVSCIQAVVLDEAD 168 Query 135 H 135 Sbjct 169 R 169 >sp|A1RFB3|RHLB_SHESW ATP-dependent RNA helicase RhlB OS=Shewanella sp. (strain W3-18-1) OX=351745 GN=rhlB PE=3 SV=1 Length=439 Score = 156 bits (395), Expect = 2e-40, Method: Composition-based stats. Identities = 64/325 (20%), Positives = 115/325 (35%), Gaps = 60/325 (18%) Query 253 FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR-----YNDALLIHDTVRAVDALAALQ 307 +G + Y+ Q L + + R+ + A+++ + R D L ++ Sbjct 119 YGGESYDVQRKVLDQGVDILIGTTGRIIDYVRQGIISLTAIQAVVLDEADRMFD-LGFIK 177 Query 308 DFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPE---------------- 347 D ++ A +RL LF + ELA+ + P Sbjct 178 DIRFLFR----RMPDANQRLNMLFSATLSMKVQELAYDHMNDPVKVDIAPDEKTSKNIKE 233 Query 348 ---NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI 404 P E ++L + I+F+ T+ S +L WL + R LL Sbjct 234 EVFYPSQEDKMRLLLTLIEEDWPEKAIVFSNTKHSCENLWSWL------EGDGHRVGLLT 287 Query 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 G + Q+ + ++++F G L++LVAT VA GL I + V Y L + Sbjct 288 G--------DVPQKKRIRILEQFTSGQLDILVATDVAARGLHISDVSHVYNYDLPDDCED 339 Query 465 MVQARGR-ARADQSV--YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK 521 V GR RA +F E + L A+E+ + ++ + + A Sbjct 340 YVHRIGRTGRAGNKGVSISFACEEYALNLP------AIESYINHSIP----VSNYDSSAL 389 Query 522 IRDLQQAALTKRAAQAAQRENQRQQ 546 + D+ R A R + + Sbjct 390 LEDIPAPVKIPRKHPAGTRNLRERA 414 Score = 45.2 bits (105), Expect = 0.001, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 39/119 (33%), Gaps = 13/119 (11%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGE-EFRRMLDGRWT 76 TG GKT A HL ++ + +++ L Q + R Sbjct 55 TGTGKTMAFLVATFNHLLSTPIPEGRQINQPRAIIMAPTRELAIQIAKDAILLAKHTRLK 114 Query 77 VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH 135 V + G L + D+LI T + + + + LT +V+DE Sbjct 115 VGIVYGGESYDVQRKVLDQGVDILIGTTGRIIDYV----RQGIISLTAIQAVVLDEADR 169 >sp|A4YB09|RHLB_SHEPC ATP-dependent RNA helicase RhlB OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) OX=319224 GN=rhlB PE=3 SV=1 Length=439 Score = 156 bits (395), Expect = 2e-40, Method: Composition-based stats. Identities = 64/325 (20%), Positives = 115/325 (35%), Gaps = 60/325 (18%) Query 253 FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR-----YNDALLIHDTVRAVDALAALQ 307 +G + Y+ Q L + + R+ + A+++ + R D L ++ Sbjct 119 YGGESYDVQRKVLDQGVDILIGTTGRIIDYVRQGIISLTAIQAVVLDEADRMFD-LGFIK 177 Query 308 DFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPE---------------- 347 D ++ A +RL LF + ELA+ + P Sbjct 178 DIRFLFR----RMPDANQRLNMLFSATLSMKVQELAYDHMNDPVKVDIAPDEKTSKNIKE 233 Query 348 ---NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI 404 P E ++L + I+F+ T+ S +L WL + R LL Sbjct 234 EVFYPSQEDKMRLLLTLIEEDWPEKAIVFSNTKHSCENLWSWL------EGDGHRVGLLT 287 Query 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 G + Q+ + ++++F G L++LVAT VA GL I + V Y L + Sbjct 288 G--------DVPQKKRIRILEQFTSGQLDILVATDVAARGLHISDVSHVYNYDLPDDCED 339 Query 465 MVQARGR-ARADQSV--YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK 521 V GR RA +F E + L A+E+ + ++ + + A Sbjct 340 YVHRIGRTGRAGNKGVSISFACEEYALNLP------AIESYINHSIP----VSNYDSSAL 389 Query 522 IRDLQQAALTKRAAQAAQRENQRQQ 546 + D+ R A R + + Sbjct 390 LEDIPAPVKIPRKHPAGTRNLRERA 414 Score = 45.2 bits (105), Expect = 0.001, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 39/119 (33%), Gaps = 13/119 (11%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGE-EFRRMLDGRWT 76 TG GKT A HL ++ + +++ L Q + R Sbjct 55 TGTGKTMAFLVATFNHLLSTPIPEGRQINQPRAIIMAPTRELAIQIAKDAILLAKHTRLK 114 Query 77 VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH 135 V + G L + D+LI T + + + + LT +V+DE Sbjct 115 VGIVYGGESYDVQRKVLDQGVDILIGTTGRIIDYV----RQGIISLTAIQAVVLDEADR 169 >sp|A8GZJ0|RHLB_SHEPA ATP-dependent RNA helicase RhlB OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) OX=398579 GN=rhlB PE=3 SV=1 Length=436 Score = 156 bits (395), Expect = 2e-40, Method: Composition-based stats. Identities = 65/324 (20%), Positives = 117/324 (36%), Gaps = 60/324 (19%) Query 253 FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR-----RYNDALLIHDTVRAVDALAALQ 307 +G + YE Q L + + R+ + A+++ + R D L ++ Sbjct 119 YGGEGYEVQRKVLDKGVDILIGTTGRIIDYVRQGVINVSCIQAVVLDEADRMFD-LGFIK 177 Query 308 DFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPE---------------- 347 D ++ A+ RL LF + ELA+ + PE Sbjct 178 DIRFLFR----RMPDAKSRLNMLFSATLSMKVQELAYDHMNEPEKVEIAPNEKTSKNIKE 233 Query 348 ---NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI 404 P +E +L + I+F+ T+ S + WL + RA LL Sbjct 234 EIFYPSMEEKMPLLLSLLEEDWPEKAIVFSNTKHSCEKVWSWL------EGDGHRAGLLT 287 Query 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 G + Q+ + ++++F G +++LVAT VA GL I + V Y L + Sbjct 288 G--------DVPQKKRLRILEQFTKGDIDILVATDVAARGLHISDVSHVYNYDLPDDCED 339 Query 465 MVQARGR-ARADQSV--YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK 521 V GR RA Q +F E + L A+E+ ++ ++ + + A Sbjct 340 YVHRIGRTGRAGQKGVSVSFACEEYALNLP------AIESYIQHSIP----VTSYDSDAL 389 Query 522 IRDLQQAALTKRAAQAAQRENQRQ 545 + D+ R R + + Sbjct 390 LDDIPPPVRIHRKPSTHTRNTRDR 413 Score = 45.2 bits (105), Expect = 0.002, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 40/121 (33%), Gaps = 17/121 (14%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQ---HGEEFRRMLDGR 74 TG GKT A HL ++ + +++ L Q + + Sbjct 55 TGTGKTLAFLVATFNHLLSTPIPAERQLNQPRAIIMAPTRELAIQIAKDANLLAKHTGLK 114 Query 75 WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECH 134 V + G G L + D+LI T + + + + ++ +V+DE Sbjct 115 --VGIVYGGEGYEVQRKVLDKGVDILIGTTGRIIDYV----RQGVINVSCIQAVVLDEAD 168 Query 135 H 135 Sbjct 169 R 169 >sp|B2VG58|RHLB_ERWT9 ATP-dependent RNA helicase RhlB OS=Erwinia tasmaniensis (strain DSM 17950 / CFBP 7177 / CIP 109463 / NCPPB 4357 / Et1/99) OX=465817 GN=rhlB PE=3 SV=1 Length=430 Score = 156 bits (394), Expect = 2e-40, Method: Composition-based stats. Identities = 64/332 (19%), Positives = 108/332 (33%), Gaps = 60/332 (18%) Query 247 PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN-----DALLIHDTVRAVD 301 +L +G Y++Q+ L + R+ + + +++ + R D Sbjct 113 LKLGLAYGGDGYDKQLKVLENGVDVLIGTTGRLIDYAKQNHVNLGAIQVVVLDEADRMFD 172 Query 302 ALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPENPKLE----M 353 L ++D ++ A +RL LF R ELA + E ++E Sbjct 173 -LGFIKDIRWLFR----RMPAANQRLNMLFSATLSFRVRELAFENMNNAEYVEVEPDQKT 227 Query 354 LEKILQRQFSSSNS---------------PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI 398 +I + F SN R IIF T+ + L Sbjct 228 GHRIKEELFYPSNEEKMRLLQTLIEEEWPDRTIIFANTKHRCEDVW------GHLAADGH 281 Query 399 RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL 458 R LL G + Q+ + ++ F G +++LVAT VA GL IP V Y L Sbjct 282 RVGLLTG--------DVAQKKRLRILDDFTKGDVDILVATDVAARGLHIPAVTHVFNYDL 333 Query 459 LTNEISMVQAR---GRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQ 515 + V GRA A+ + E + L A+E + ++ + + Sbjct 334 PDDREDYVHRIGRTGRAGANGHSISLACEEYALNLP------AIEEYIGHSI----TVSR 383 Query 516 AEYQAKIRDLQQAALTKRAAQAAQRENQRQQF 547 A + DL R Sbjct 384 YNSDALMTDLPPPKRLTRNRSGNGPRRGGNNN 415 Score = 44.0 bits (102), Expect = 0.004, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 38/119 (32%), Gaps = 13/119 (11%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRML-DGRWT 76 TG GKT A HL + + ++L L Q + + Sbjct 55 TGTGKTMAFLTSTFHHLLSHPAPEGRQTNQPRALILAPTRELAVQIHADAEPLAQITGLK 114 Query 77 VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH 135 + G G L D+LI T L ++ HV L ++V+DE Sbjct 115 LGLAYGGDGYDKQLKVLENGVDVLIGTTGRLIDY----AKQNHVNLGAIQVVVLDEADR 169 >sp|B8CHZ1|RHLB_SHEPW ATP-dependent RNA helicase RhlB OS=Shewanella piezotolerans (strain WP3 / JCM 13877) OX=225849 GN=rhlB PE=3 SV=1 Length=437 Score = 156 bits (395), Expect = 2e-40, Method: Composition-based stats. Identities = 65/324 (20%), Positives = 120/324 (37%), Gaps = 60/324 (19%) Query 253 FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND-----ALLIHDTVRAVDALAALQ 307 +G + YE Q L + + R+ + D A+++ + R D L ++ Sbjct 119 YGGEGYEAQRKVLDKGIDILIGTTGRIIDYVRQGVIDVSAIQAVVLDEADRMFD-LGFIK 177 Query 308 DFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPE---------------- 347 D ++ A+ RL LF + ELA+ + PE Sbjct 178 DIRFLFR----RMPDAKSRLNMLFSATLSMKVQELAYDHMNEPEKVEIAPNEKTSKNIKE 233 Query 348 ---NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI 404 P +E +L + I+F+ T+ S + WL + R LL Sbjct 234 EIFYPSMEEKMPLLLSLLEEDWPEKAIVFSNTKHSCEKVWSWL------EGDGHRVGLLT 287 Query 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 G + Q+ + ++++F G +++LVAT VA GL I + V Y L + Sbjct 288 G--------DVPQKKRLRILEQFTSGDIDVLVATDVAARGLHIADVSHVYNYDLPDDCED 339 Query 465 MVQARGR-ARADQSV--YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK 521 V GR RA Q +F E + L A+E+ ++ ++ + + +A Sbjct 340 YVHRIGRTGRAGQKGVSVSFACEEYALNLP------AIESYIQHSIP----VTSYDSEAL 389 Query 522 IRDLQQAALTKRAAQAAQRENQRQ 545 + D+ R + R ++ + Sbjct 390 LDDIPAPKRIHRKPSSHSRNSRDR 413 Score = 45.9 bits (107), Expect = 0.001, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 42/121 (35%), Gaps = 17/121 (14%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQ---HGEEFRRMLDGR 74 TG GKT A HL ++ + +++ L Q + + Sbjct 55 TGTGKTLAFLVATFNHLLTEAAPTERKINQPRAIIMAPTRELAIQIAKDANLLAKHTGLK 114 Query 75 WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECH 134 V + G G A L + D+LI T + + + ++++ +V+DE Sbjct 115 --VGIVYGGEGYEAQRKVLDKGIDILIGTTGRIIDYV----RQGVIDVSAIQAVVLDEAD 168 Query 135 H 135 Sbjct 169 R 169 >sp|C4K8M8|RHLB_HAMD5 ATP-dependent RNA helicase RhlB OS=Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) OX=572265 GN=rhlB PE=3 SV=1 Length=422 Score = 156 bits (394), Expect = 3e-40, Method: Composition-based stats. Identities = 73/338 (22%), Positives = 119/338 (35%), Gaps = 60/338 (18%) Query 243 HLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN-----DALLIHDTV 297 ++ +G Y++Q+ L + R+ + + +++ + Sbjct 109 QFTSLKMGLAYGGDGYDKQLKILESGVDILIGTPGRIIDYAKQNFIHLNALQVIVLDEAD 168 Query 298 RAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPENPKLEM 353 R D L ++D ++ AE+RL LF R EL+ + PE ++E Sbjct 169 RMYD-LGFIKDIRWLFR----RMPPAEKRLNMLFSATLSYRVRELSFEQMNHPEYIEVEP 223 Query 354 LEKI----LQRQFSSSNSP---------------RGIIFTRTRQSAHSLLLWLQQQQGLQ 394 L+KI + F SN R IIF T+Q + L Sbjct 224 LQKIGSQIQEELFYPSNEDKMRLLQTLIEEEWPDRCIIFANTKQRCEDIW------GHLV 277 Query 395 TVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV 454 R LL G + QR + +++ F G L++LVAT VA GL IP V Sbjct 278 ADGHRVGLLTG--------DVAQRKRIQILDDFSKGYLDILVATDVAARGLHIPKVTHVF 329 Query 455 RYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQK 512 Y L N + GR RA + Y+ +A E +E + Sbjct 330 NYDLPENVEDYIHRIGRTGRAGEKGYSISLACEAFASHL-----STIEACTGHRIPT--- 381 Query 513 MDQAEYQAKIRDLQQAALTKRAAQ--AAQRENQRQQFP 548 + +A + DL Q +R + A R + P Sbjct 382 -SEYNKEALLTDLPQPKRLQRHHRHYAGSRNQGASRKP 418 Score = 43.2 bits (100), Expect = 0.007, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 43/132 (33%), Gaps = 17/132 (13%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEE 66 L G+++ TG GKT A +L + + +++V L Q Sbjct 44 LAGRDVAAQAQTGTGKTLAFLASVFNYLLTNAADETRQCEQPRALIMVPTRELAIQ---- 99 Query 67 FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELT 123 D S MG G + +L ++L + ++ + L Sbjct 100 --IYTDAETLSQFTSLKMGLAYGGDGYDKQLKILESGVDILIGTPGRIIDYAKQNFIHLN 157 Query 124 VFSLIVVDECHH 135 +IV+DE Sbjct 158 ALQVIVLDEADR 169 >sp|A8G828|RHLB_SERP5 ATP-dependent RNA helicase RhlB OS=Serratia proteamaculans (strain 568) OX=399741 GN=rhlB PE=3 SV=1 Length=428 Score = 156 bits (394), Expect = 3e-40, Method: Composition-based stats. Identities = 67/331 (20%), Positives = 113/331 (34%), Gaps = 58/331 (18%) Query 247 PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND-----ALLIHDTVRAVD 301 ++ +G Y++Q+ L + R+ + Y D +++ + R D Sbjct 113 LKMGLAYGGDGYDKQLKVLESGVDILVGTTGRLIDYAKQNYIDLGAIQVVVLDEADRMYD 172 Query 302 ALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPEN----PKLEM 353 L ++D ++ ++RL LF R ELA + E P+ + Sbjct 173 -LGFIKDIRWLFR----RMPAVDQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKT 227 Query 354 LEKILQRQFSSSNS---------------PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI 398 +I + F SN R IIF T+ + L Sbjct 228 GHRIKEELFYPSNEEKMRLLQTLIEEEWPDRCIIFANTKHRCEDVW------GHLAADGH 281 Query 399 RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL 458 R LL G + Q+ + ++ F G L++LVAT VA GL IP V Y L Sbjct 282 RVGLLTG--------DVAQKKRLRILDDFTKGNLDILVATDVAARGLHIPLVTHVFNYDL 333 Query 459 LTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAE 517 + V GR RA +S ++ L A+ET ++ + Sbjct 334 PDDCEDYVHRIGRTGRAGESGHSISLACEEYALN----LPAIETYTGHSIPVSKYNS--- 386 Query 518 YQAKIRDLQQAALTKRAAQAA--QRENQRQQ 546 A + DL R +R + ++ Sbjct 387 -DALLSDLPAPKRLARPRGGNGPRRNSAPRR 416 Score = 46.3 bits (108), Expect = 6e-04, Method: Composition-based stats. Identities = 20/121 (17%), Positives = 40/121 (33%), Gaps = 17/121 (14%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV 77 TG GKT A +L ++ + +++ L Q D Sbjct 55 TGTGKTLAFLTSTFHYLLSHPAKQDRKINQPRALIMAPTRELAVQ------IHSDAEALS 108 Query 78 TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH 134 + MG G + +L ++L L ++ +++L ++V+DE Sbjct 109 QSTGLKMGLAYGGDGYDKQLKVLESGVDILVGTTGRLIDYAKQNYIDLGAIQVVVLDEAD 168 Query 135 H 135 Sbjct 169 R 169 >sp|P0A2P0|RHLB_SALTY ATP-dependent RNA helicase RhlB OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=rhlB PE=3 SV=2 Length=421 Score = 155 bits (392), Expect = 4e-40, Method: Composition-based stats. Identities = 75/401 (19%), Positives = 130/401 (32%), Gaps = 58/401 (14%) Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 +P A L A V + + L H ++ N P Sbjct 33 TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAP 92 Query 229 FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR 286 +L ++ + +L +G Y++Q+ L + R+ + Sbjct 93 TRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN 152 Query 287 YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE 337 + +++ + R D L ++D ++ A +RL LF R E Sbjct 153 HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPAAQRLNMLFSATLSYRVRE 207 Query 338 LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ 378 LA + E P+ + +I + F SN R IIF T+ Sbjct 208 LAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH 267 Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT 438 + L R LL G + Q+ + ++ +F G L++LVAT Sbjct 268 RCEDIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT 313 Query 439 SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE 497 VA GL IP V Y L + V GR RA S ++ L Sbjct 314 DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP 369 Query 498 ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA 538 A+E+ + ++ + + A + DL + R+ Sbjct 370 AIESYIGHSIPVSKYNPE----ALMNDLPKPLRLTRSRPGN 406 Score = 43.6 bits (101), Expect = 0.005, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV 77 TG GKT A +L V+ + +++ L Q D Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQ------IHADAEPLA 108 Query 78 TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH 134 +G G + +L ++L L ++ H+ L ++V+DE Sbjct 109 QATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168 Query 135 H 135 Sbjct 169 R 169 >sp|P0A2P1|RHLB_SALTI ATP-dependent RNA helicase RhlB OS=Salmonella typhi OX=90370 GN=rhlB PE=3 SV=2 Length=421 Score = 155 bits (392), Expect = 4e-40, Method: Composition-based stats. Identities = 75/401 (19%), Positives = 130/401 (32%), Gaps = 58/401 (14%) Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 +P A L A V + + L H ++ N P Sbjct 33 TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAP 92 Query 229 FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR 286 +L ++ + +L +G Y++Q+ L + R+ + Sbjct 93 TRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN 152 Query 287 YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE 337 + +++ + R D L ++D ++ A +RL LF R E Sbjct 153 HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPAAQRLNMLFSATLSYRVRE 207 Query 338 LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ 378 LA + E P+ + +I + F SN R IIF T+ Sbjct 208 LAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH 267 Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT 438 + L R LL G + Q+ + ++ +F G L++LVAT Sbjct 268 RCEDIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT 313 Query 439 SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE 497 VA GL IP V Y L + V GR RA S ++ L Sbjct 314 DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP 369 Query 498 ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA 538 A+E+ + ++ + + A + DL + R+ Sbjct 370 AIESYIGHSIPVSKYNPE----ALMNDLPKPLRLTRSRPGN 406 Score = 43.6 bits (101), Expect = 0.005, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV 77 TG GKT A +L V+ + +++ L Q D Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQ------IHADAEPLA 108 Query 78 TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH 134 +G G + +L ++L L ++ H+ L ++V+DE Sbjct 109 QATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168 Query 135 H 135 Sbjct 169 R 169 >sp|B4TNT3|RHLB_SALSV ATP-dependent RNA helicase RhlB OS=Salmonella schwarzengrund (strain CVM19633) OX=439843 GN=rhlB PE=3 SV=1 Length=421 Score = 155 bits (392), Expect = 4e-40, Method: Composition-based stats. Identities = 75/401 (19%), Positives = 130/401 (32%), Gaps = 58/401 (14%) Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 +P A L A V + + L H ++ N P Sbjct 33 TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAP 92 Query 229 FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR 286 +L ++ + +L +G Y++Q+ L + R+ + Sbjct 93 TRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN 152 Query 287 YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE 337 + +++ + R D L ++D ++ A +RL LF R E Sbjct 153 HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPAAQRLNMLFSATLSYRVRE 207 Query 338 LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ 378 LA + E P+ + +I + F SN R IIF T+ Sbjct 208 LAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH 267 Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT 438 + L R LL G + Q+ + ++ +F G L++LVAT Sbjct 268 RCEDIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT 313 Query 439 SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE 497 VA GL IP V Y L + V GR RA S ++ L Sbjct 314 DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP 369 Query 498 ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA 538 A+E+ + ++ + + A + DL + R+ Sbjct 370 AIESYIGHSIPVSKYNPE----ALMNDLPKPLRLTRSRPGN 406 Score = 43.6 bits (101), Expect = 0.005, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV 77 TG GKT A +L V+ + +++ L Q D Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQ------IHADAEPLA 108 Query 78 TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH 134 +G G + +L ++L L ++ H+ L ++V+DE Sbjct 109 QATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168 Query 135 H 135 Sbjct 169 R 169 >sp|C0Q2V9|RHLB_SALPC ATP-dependent RNA helicase RhlB OS=Salmonella paratyphi C (strain RKS4594) OX=476213 GN=rhlB PE=3 SV=1 Length=421 Score = 155 bits (392), Expect = 4e-40, Method: Composition-based stats. Identities = 75/401 (19%), Positives = 130/401 (32%), Gaps = 58/401 (14%) Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 +P A L A V + + L H ++ N P Sbjct 33 TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAP 92 Query 229 FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR 286 +L ++ + +L +G Y++Q+ L + R+ + Sbjct 93 TRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN 152 Query 287 YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE 337 + +++ + R D L ++D ++ A +RL LF R E Sbjct 153 HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPAAQRLNMLFSATLSYRVRE 207 Query 338 LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ 378 LA + E P+ + +I + F SN R IIF T+ Sbjct 208 LAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH 267 Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT 438 + L R LL G + Q+ + ++ +F G L++LVAT Sbjct 268 RCEDIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT 313 Query 439 SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE 497 VA GL IP V Y L + V GR RA S ++ L Sbjct 314 DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP 369 Query 498 ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA 538 A+E+ + ++ + + A + DL + R+ Sbjct 370 AIESYIGHSIPVSKYNPE----ALMNDLPKPLRLTRSRPGN 406 Score = 43.6 bits (101), Expect = 0.005, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV 77 TG GKT A +L V+ + +++ L Q D Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQ------IHADAEPLA 108 Query 78 TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH 134 +G G + +L ++L L ++ H+ L ++V+DE Sbjct 109 QATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168 Query 135 H 135 Sbjct 169 R 169 >sp|A9MXF3|RHLB_SALPB ATP-dependent RNA helicase RhlB OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) OX=1016998 GN=rhlB PE=3 SV=1 Length=421 Score = 155 bits (392), Expect = 4e-40, Method: Composition-based stats. Identities = 75/401 (19%), Positives = 130/401 (32%), Gaps = 58/401 (14%) Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 +P A L A V + + L H ++ N P Sbjct 33 TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAP 92 Query 229 FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR 286 +L ++ + +L +G Y++Q+ L + R+ + Sbjct 93 TRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN 152 Query 287 YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE 337 + +++ + R D L ++D ++ A +RL LF R E Sbjct 153 HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPAAQRLNMLFSATLSYRVRE 207 Query 338 LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ 378 LA + E P+ + +I + F SN R IIF T+ Sbjct 208 LAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH 267 Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT 438 + L R LL G + Q+ + ++ +F G L++LVAT Sbjct 268 RCEDIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT 313 Query 439 SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE 497 VA GL IP V Y L + V GR RA S ++ L Sbjct 314 DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP 369 Query 498 ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA 538 A+E+ + ++ + + A + DL + R+ Sbjct 370 AIESYIGHSIPVSKYNPE----ALMNDLPKPLRLTRSRPGN 406 Score = 43.6 bits (101), Expect = 0.005, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV 77 TG GKT A +L V+ + +++ L Q D Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQ------IHADAEPLA 108 Query 78 TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH 134 +G G + +L ++L L ++ H+ L ++V+DE Sbjct 109 QATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168 Query 135 H 135 Sbjct 169 R 169 >sp|B4SZ26|RHLB_SALNS ATP-dependent RNA helicase RhlB OS=Salmonella newport (strain SL254) OX=423368 GN=rhlB PE=3 SV=1 Length=421 Score = 155 bits (392), Expect = 4e-40, Method: Composition-based stats. Identities = 75/401 (19%), Positives = 130/401 (32%), Gaps = 58/401 (14%) Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 +P A L A V + + L H ++ N P Sbjct 33 TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAP 92 Query 229 FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR 286 +L ++ + +L +G Y++Q+ L + R+ + Sbjct 93 TRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN 152 Query 287 YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE 337 + +++ + R D L ++D ++ A +RL LF R E Sbjct 153 HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPAAQRLNMLFSATLSYRVRE 207 Query 338 LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ 378 LA + E P+ + +I + F SN R IIF T+ Sbjct 208 LAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH 267 Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT 438 + L R LL G + Q+ + ++ +F G L++LVAT Sbjct 268 RCEDIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT 313 Query 439 SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE 497 VA GL IP V Y L + V GR RA S ++ L Sbjct 314 DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP 369 Query 498 ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA 538 A+E+ + ++ + + A + DL + R+ Sbjct 370 AIESYIGHSIPVSKYNPE----ALMNDLPKPLRLTRSRPGN 406 Score = 43.6 bits (101), Expect = 0.005, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV 77 TG GKT A +L V+ + +++ L Q D Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQ------IHADAEPLA 108 Query 78 TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH 134 +G G + +L ++L L ++ H+ L ++V+DE Sbjct 109 QATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168 Query 135 H 135 Sbjct 169 R 169 >sp|B4TB13|RHLB_SALHS ATP-dependent RNA helicase RhlB OS=Salmonella heidelberg (strain SL476) OX=454169 GN=rhlB PE=3 SV=1 Length=421 Score = 155 bits (392), Expect = 4e-40, Method: Composition-based stats. Identities = 75/401 (19%), Positives = 130/401 (32%), Gaps = 58/401 (14%) Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 +P A L A V + + L H ++ N P Sbjct 33 TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAP 92 Query 229 FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR 286 +L ++ + +L +G Y++Q+ L + R+ + Sbjct 93 TRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN 152 Query 287 YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE 337 + +++ + R D L ++D ++ A +RL LF R E Sbjct 153 HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPAAQRLNMLFSATLSYRVRE 207 Query 338 LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ 378 LA + E P+ + +I + F SN R IIF T+ Sbjct 208 LAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH 267 Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT 438 + L R LL G + Q+ + ++ +F G L++LVAT Sbjct 268 RCEDIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT 313 Query 439 SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE 497 VA GL IP V Y L + V GR RA S ++ L Sbjct 314 DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP 369 Query 498 ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA 538 A+E+ + ++ + + A + DL + R+ Sbjct 370 AIESYIGHSIPVSKYNPE----ALMNDLPKPLRLTRSRPGN 406 Score = 43.6 bits (101), Expect = 0.005, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV 77 TG GKT A +L V+ + +++ L Q D Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQ------IHADAEPLA 108 Query 78 TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH 134 +G G + +L ++L L ++ H+ L ++V+DE Sbjct 109 QATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168 Query 135 H 135 Sbjct 169 R 169 >sp|B5RFS3|RHLB_SALG2 ATP-dependent RNA helicase RhlB OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) OX=550538 GN=rhlB PE=3 SV=1 Length=421 Score = 155 bits (392), Expect = 4e-40, Method: Composition-based stats. Identities = 75/401 (19%), Positives = 130/401 (32%), Gaps = 58/401 (14%) Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 +P A L A V + + L H ++ N P Sbjct 33 TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAP 92 Query 229 FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR 286 +L ++ + +L +G Y++Q+ L + R+ + Sbjct 93 TRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN 152 Query 287 YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE 337 + +++ + R D L ++D ++ A +RL LF R E Sbjct 153 HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPAAQRLNMLFSATLSYRVRE 207 Query 338 LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ 378 LA + E P+ + +I + F SN R IIF T+ Sbjct 208 LAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH 267 Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT 438 + L R LL G + Q+ + ++ +F G L++LVAT Sbjct 268 RCEDIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT 313 Query 439 SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE 497 VA GL IP V Y L + V GR RA S ++ L Sbjct 314 DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP 369 Query 498 ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA 538 A+E+ + ++ + + A + DL + R+ Sbjct 370 AIESYIGHSIPVSKYNPE----ALMNDLPKPLRLTRSRPGN 406 Score = 43.6 bits (101), Expect = 0.005, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV 77 TG GKT A +L V+ + +++ L Q D Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQ------IHADAEPLA 108 Query 78 TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH 134 +G G + +L ++L L ++ H+ L ++V+DE Sbjct 109 QATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168 Query 135 H 135 Sbjct 169 R 169 >sp|B5QVH2|RHLB_SALEP ATP-dependent RNA helicase RhlB OS=Salmonella enteritidis PT4 (strain P125109) OX=550537 GN=rhlB PE=3 SV=1 Length=421 Score = 155 bits (392), Expect = 4e-40, Method: Composition-based stats. Identities = 75/401 (19%), Positives = 130/401 (32%), Gaps = 58/401 (14%) Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 +P A L A V + + L H ++ N P Sbjct 33 TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAP 92 Query 229 FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR 286 +L ++ + +L +G Y++Q+ L + R+ + Sbjct 93 TRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN 152 Query 287 YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE 337 + +++ + R D L ++D ++ A +RL LF R E Sbjct 153 HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPAAQRLNMLFSATLSYRVRE 207 Query 338 LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ 378 LA + E P+ + +I + F SN R IIF T+ Sbjct 208 LAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH 267 Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT 438 + L R LL G + Q+ + ++ +F G L++LVAT Sbjct 268 RCEDIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT 313 Query 439 SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE 497 VA GL IP V Y L + V GR RA S ++ L Sbjct 314 DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP 369 Query 498 ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA 538 A+E+ + ++ + + A + DL + R+ Sbjct 370 AIESYIGHSIPVSKYNPE----ALMNDLPKPLRLTRSRPGN 406 Score = 43.6 bits (101), Expect = 0.005, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV 77 TG GKT A +L V+ + +++ L Q D Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQ------IHADAEPLA 108 Query 78 TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH 134 +G G + +L ++L L ++ H+ L ++V+DE Sbjct 109 QATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168 Query 135 H 135 Sbjct 169 R 169 >sp|Q57HT6|RHLB_SALCH ATP-dependent RNA helicase RhlB OS=Salmonella choleraesuis (strain SC-B67) OX=321314 GN=rhlB PE=3 SV=1 Length=421 Score = 155 bits (392), Expect = 4e-40, Method: Composition-based stats. Identities = 75/401 (19%), Positives = 130/401 (32%), Gaps = 58/401 (14%) Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 +P A L A V + + L H ++ N P Sbjct 33 TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAP 92 Query 229 FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR 286 +L ++ + +L +G Y++Q+ L + R+ + Sbjct 93 TRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN 152 Query 287 YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE 337 + +++ + R D L ++D ++ A +RL LF R E Sbjct 153 HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPAAQRLNMLFSATLSYRVRE 207 Query 338 LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ 378 LA + E P+ + +I + F SN R IIF T+ Sbjct 208 LAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH 267 Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT 438 + L R LL G + Q+ + ++ +F G L++LVAT Sbjct 268 RCEDIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT 313 Query 439 SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE 497 VA GL IP V Y L + V GR RA S ++ L Sbjct 314 DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP 369 Query 498 ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA 538 A+E+ + ++ + + A + DL + R+ Sbjct 370 AIESYIGHSIPVSKYNPE----ALMNDLPKPLRLTRSRPGN 406 Score = 43.6 bits (101), Expect = 0.005, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV 77 TG GKT A +L V+ + +++ L Q D Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQ------IHADAEPLA 108 Query 78 TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH 134 +G G + +L ++L L ++ H+ L ++V+DE Sbjct 109 QATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168 Query 135 H 135 Sbjct 169 R 169 >sp|B5EZ40|RHLB_SALA4 ATP-dependent RNA helicase RhlB OS=Salmonella agona (strain SL483) OX=454166 GN=rhlB PE=3 SV=1 Length=421 Score = 155 bits (392), Expect = 4e-40, Method: Composition-based stats. Identities = 75/401 (19%), Positives = 130/401 (32%), Gaps = 58/401 (14%) Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 +P A L A V + + L H ++ N P Sbjct 33 TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAP 92 Query 229 FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR 286 +L ++ + +L +G Y++Q+ L + R+ + Sbjct 93 TRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN 152 Query 287 YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE 337 + +++ + R D L ++D ++ A +RL LF R E Sbjct 153 HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPAAQRLNMLFSATLSYRVRE 207 Query 338 LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ 378 LA + E P+ + +I + F SN R IIF T+ Sbjct 208 LAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH 267 Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT 438 + L R LL G + Q+ + ++ +F G L++LVAT Sbjct 268 RCEDIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT 313 Query 439 SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE 497 VA GL IP V Y L + V GR RA S ++ L Sbjct 314 DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP 369 Query 498 ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA 538 A+E+ + ++ + + A + DL + R+ Sbjct 370 AIESYIGHSIPVSKYNPE----ALMNDLPKPLRLTRSRPGN 406 Score = 43.6 bits (101), Expect = 0.005, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV 77 TG GKT A +L V+ + +++ L Q D Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQ------IHADAEPLA 108 Query 78 TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH 134 +G G + +L ++L L ++ H+ L ++V+DE Sbjct 109 QATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168 Query 135 H 135 Sbjct 169 R 169 >sp|A9L5D5|RHLB_SHEB9 ATP-dependent RNA helicase RhlB OS=Shewanella baltica (strain OS195) OX=399599 GN=rhlB PE=3 SV=1 Length=438 Score = 156 bits (393), Expect = 4e-40, Method: Composition-based stats. Identities = 64/324 (20%), Positives = 117/324 (36%), Gaps = 60/324 (19%) Query 253 FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR-----RYNDALLIHDTVRAVDALAALQ 307 +G + Y+ Q L + + R+ + A+++ + R D L ++ Sbjct 119 YGGESYDVQRKVLDQGVDILIGTTGRIIDYVRQGIIGLNSIQAVVLDEADRMFD-LGFIK 177 Query 308 DFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPE---------------- 347 D ++ A +RL LF + ELA+ + P Sbjct 178 DIRFLFR----RMPEANQRLNMLFSATLSMKVQELAYDHMNEPVKVEIAPEEKTSKNIKE 233 Query 348 ---NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI 404 P E ++L + I+F+ T+ S +L WL + R LL Sbjct 234 EIFYPSQEEKMRLLLTLIEEDWPEKAIVFSNTKHSCETLWSWL------EGDGHRVGLLT 287 Query 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 G + Q+ + ++++F G L++LVAT VA GL I + V Y L + Sbjct 288 G--------DVPQKKRIRILEQFTSGQLDILVATDVAARGLHISDVSHVYNYDLPDDCED 339 Query 465 MVQARGR-ARADQSV--YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK 521 V GR RA +F E + L A+E+ + ++ + + +A Sbjct 340 YVHRIGRTGRAGNKGMSISFACEEYALNLP------AIESYINHSIP----VSNYDSEAL 389 Query 522 IRDLQQAALTKRAAQAAQRENQRQ 545 + D+ A R + R + + Sbjct 390 LADIPTPAKIHRKHPSGTRNLRDR 413 Score = 43.2 bits (100), Expect = 0.006, Method: Composition-based stats. Identities = 21/119 (18%), Positives = 37/119 (31%), Gaps = 13/119 (11%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGE-EFRRMLDGRWT 76 TG GKT A HL ++ + +++ L Q + Sbjct 55 TGTGKTMAFLVATFNHLLSTPVPEGRLINQPRAIIMAPTRELAIQIAKDAILLAKHTHLK 114 Query 77 VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH 135 V + G L + D+LI T + + + + L +V+DE Sbjct 115 VGIVYGGESYDVQRKVLDQGVDILIGTTGRIIDYV----RQGIIGLNSIQAVVLDEADR 169 >sp|A6WTD3|RHLB_SHEB8 ATP-dependent RNA helicase RhlB OS=Shewanella baltica (strain OS185) OX=402882 GN=rhlB PE=3 SV=1 Length=438 Score = 156 bits (393), Expect = 4e-40, Method: Composition-based stats. Identities = 64/324 (20%), Positives = 117/324 (36%), Gaps = 60/324 (19%) Query 253 FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR-----RYNDALLIHDTVRAVDALAALQ 307 +G + Y+ Q L + + R+ + A+++ + R D L ++ Sbjct 119 YGGESYDVQRKVLDQGVDILIGTTGRIIDYVRQGIIGLNSIQAVVLDEADRMFD-LGFIK 177 Query 308 DFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPE---------------- 347 D ++ A +RL LF + ELA+ + P Sbjct 178 DIRFLFR----RMPEANQRLNMLFSATLSMKVQELAYDHMNEPVKVEIAPEEKTSKNIKE 233 Query 348 ---NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI 404 P E ++L + I+F+ T+ S +L WL + R LL Sbjct 234 EIFYPSQEEKMRLLLTLIEEDWPEKAIVFSNTKHSCETLWSWL------EGDGHRVGLLT 287 Query 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 G + Q+ + ++++F G L++LVAT VA GL I + V Y L + Sbjct 288 G--------DVPQKKRIRILEQFTSGQLDILVATDVAARGLHISDVSHVYNYDLPDDCED 339 Query 465 MVQARGR-ARADQSV--YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK 521 V GR RA +F E + L A+E+ + ++ + + +A Sbjct 340 YVHRIGRTGRAGNKGMSISFACEEYALNLP------AIESYINHSIP----VSNYDSEAL 389 Query 522 IRDLQQAALTKRAAQAAQRENQRQ 545 + D+ A R + R + + Sbjct 390 LADIPTPAKIHRKHPSGTRNLRDR 413 Score = 43.2 bits (100), Expect = 0.006, Method: Composition-based stats. Identities = 21/119 (18%), Positives = 37/119 (31%), Gaps = 13/119 (11%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGE-EFRRMLDGRWT 76 TG GKT A HL ++ + +++ L Q + Sbjct 55 TGTGKTMAFLVATFNHLLSTPVPEGRLINQPRAIIMAPTRELAIQIAKDAILLAKHTHLK 114 Query 77 VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH 135 V + G L + D+LI T + + + + L +V+DE Sbjct 115 VGIVYGGESYDVQRKVLDQGVDILIGTTGRIIDYV----RQGIIGLNSIQAVVLDEADR 169 >sp|A3D9I5|RHLB_SHEB5 ATP-dependent RNA helicase RhlB OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) OX=325240 GN=rhlB PE=3 SV=1 Length=438 Score = 156 bits (393), Expect = 5e-40, Method: Composition-based stats. Identities = 64/324 (20%), Positives = 117/324 (36%), Gaps = 60/324 (19%) Query 253 FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR-----RYNDALLIHDTVRAVDALAALQ 307 +G + Y+ Q L + + R+ + A+++ + R D L ++ Sbjct 119 YGGESYDVQRKVLDQGVDILIGTTGRIIDYVRQGIIGLNSIQAVVLDEADRMFD-LGFIK 177 Query 308 DFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPE---------------- 347 D ++ A +RL LF + ELA+ + P Sbjct 178 DIRFLFR----RMPEANQRLNMLFSATLSMKVQELAYDHMNEPVKVEIAPEEKTSKNIKE 233 Query 348 ---NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI 404 P E ++L + I+F+ T+ S +L WL + R LL Sbjct 234 EIFYPSQEEKMRLLLTLIEEDWPEKAIVFSNTKHSCETLWSWL------EGDGHRVGLLT 287 Query 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 G + Q+ + ++++F G L++LVAT VA GL I + V Y L + Sbjct 288 G--------DVPQKKRIRILEQFTSGQLDILVATDVAARGLHISDVSHVYNYDLPDDCED 339 Query 465 MVQARGR-ARADQSV--YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK 521 V GR RA +F E + L A+E+ + ++ + + +A Sbjct 340 YVHRIGRTGRAGNKGMSISFACEEYALNLP------AIESYINHSIP----VSNYDSEAL 389 Query 522 IRDLQQAALTKRAAQAAQRENQRQ 545 + D+ A R + R + + Sbjct 390 LADIPTPAKIHRKHPSGTRNLRDR 413 Score = 43.2 bits (100), Expect = 0.006, Method: Composition-based stats. Identities = 21/119 (18%), Positives = 37/119 (31%), Gaps = 13/119 (11%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGE-EFRRMLDGRWT 76 TG GKT A HL ++ + +++ L Q + Sbjct 55 TGTGKTMAFLVATFNHLLSTPVPEGRLINQPRAIIMAPTRELAIQIAKDAILLAKHTHLK 114 Query 77 VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH 135 V + G L + D+LI T + + + + L +V+DE Sbjct 115 VGIVYGGESYDVQRKVLDQGVDILIGTTGRIIDYV----RQGIIGLNSIQAVVLDEADR 169 >sp|B8E670|RHLB_SHEB2 ATP-dependent RNA helicase RhlB OS=Shewanella baltica (strain OS223) OX=407976 GN=rhlB PE=3 SV=1 Length=438 Score = 156 bits (393), Expect = 5e-40, Method: Composition-based stats. Identities = 64/324 (20%), Positives = 117/324 (36%), Gaps = 60/324 (19%) Query 253 FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR-----RYNDALLIHDTVRAVDALAALQ 307 +G + Y+ Q L + + R+ + A+++ + R D L ++ Sbjct 119 YGGESYDVQRKVLDQGVDILIGTTGRIIDYVRQGIIGLNSIQAVVLDEADRMFD-LGFIK 177 Query 308 DFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPE---------------- 347 D ++ A +RL LF + ELA+ + P Sbjct 178 DIRFLFR----RMPEANQRLNMLFSATLSMKVQELAYDHMNEPVKVEIAPEEKTSKNIKE 233 Query 348 ---NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI 404 P E ++L + I+F+ T+ S +L WL + R LL Sbjct 234 EIFYPSQEEKMRLLLTLIEEDWPEKAIVFSNTKHSCETLWSWL------EGDGHRVGLLT 287 Query 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 G + Q+ + ++++F G L++LVAT VA GL I + V Y L + Sbjct 288 G--------DVPQKKRIRILEQFTSGQLDILVATDVAARGLHISDVSHVYNYDLPDDCED 339 Query 465 MVQARGR-ARADQSV--YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK 521 V GR RA +F E + L A+E+ + ++ + + +A Sbjct 340 YVHRIGRTGRAGNKGMSISFACEEYALNLP------AIESYINHSIP----VSNYDSEAL 389 Query 522 IRDLQQAALTKRAAQAAQRENQRQ 545 + D+ A R + R + + Sbjct 390 LADIPTPAKIHRKHPSGTRNLRDR 413 Score = 43.2 bits (100), Expect = 0.006, Method: Composition-based stats. Identities = 21/119 (18%), Positives = 37/119 (31%), Gaps = 13/119 (11%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGE-EFRRMLDGRWT 76 TG GKT A HL ++ + +++ L Q + Sbjct 55 TGTGKTMAFLVATFNHLLSTPVPEGRLINQPRAIIMAPTRELAIQIAKDAILLAKHTHLK 114 Query 77 VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH 135 V + G L + D+LI T + + + + L +V+DE Sbjct 115 VGIVYGGESYDVQRKVLDQGVDILIGTTGRIIDYV----RQGIIGLNSIQAVVLDEADR 169 >sp|B5FN74|RHLB_SALDC ATP-dependent RNA helicase RhlB OS=Salmonella dublin (strain CT_02021853) OX=439851 GN=rhlB PE=3 SV=1 Length=421 Score = 155 bits (391), Expect = 6e-40, Method: Composition-based stats. Identities = 75/401 (19%), Positives = 130/401 (32%), Gaps = 58/401 (14%) Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 +P A L A V + + L H ++ N P Sbjct 33 TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAP 92 Query 229 FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR 286 +L ++ + +L +G Y++Q+ L + R+ + Sbjct 93 TRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN 152 Query 287 YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE 337 + +++ + R D L ++D ++ A +RL LF R E Sbjct 153 HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPAAQRLNMLFSATLSYRVRE 207 Query 338 LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ 378 LA + E P+ + +I + F SN R IIF T+ Sbjct 208 LAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH 267 Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT 438 + L R LL G + Q+ + ++ +F G L++LVAT Sbjct 268 RCEDIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT 313 Query 439 SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE 497 VA GL IP V Y L + V GR RA S ++ L Sbjct 314 DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP 369 Query 498 ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA 538 A+E+ + ++ + + A + DL + R+ Sbjct 370 AIESYIGHSIPVSKYNPE----ALMNDLPKPLRLTRSRPGN 406 Score = 43.6 bits (101), Expect = 0.005, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV 77 TG GKT A +L V+ + +++ L Q D Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQ------IHADAEPLA 108 Query 78 TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH 134 +G G + +L ++L L ++ H+ L ++V+DE Sbjct 109 QATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168 Query 135 H 135 Sbjct 169 R 169 >sp|A9MJ29|RHLB_SALAR ATP-dependent RNA helicase RhlB OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) OX=41514 GN=rhlB PE=3 SV=1 Length=421 Score = 154 bits (390), Expect = 7e-40, Method: Composition-based stats. Identities = 75/401 (19%), Positives = 131/401 (33%), Gaps = 58/401 (14%) Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 +P A L A V + + L H ++ N P Sbjct 33 TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAP 92 Query 229 FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR 286 +L ++ ++ +L +G Y++Q+ L + R+ + Sbjct 93 TRELAVQIHADAEPLAQVTGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN 152 Query 287 YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE 337 + +++ + R D L ++D ++ A +RL LF R E Sbjct 153 HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPAAQRLNMLFSATLSYRVRE 207 Query 338 LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ 378 LA + E P+ + +I + F SN R IIF T+ Sbjct 208 LAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH 267 Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT 438 + L R LL G + Q+ + ++ +F G L++LVAT Sbjct 268 RCEDIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT 313 Query 439 SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE 497 VA GL IP V Y L + V GR RA S ++ L Sbjct 314 DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP 369 Query 498 ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA 538 A+E+ + ++ + + A + DL + R+ Sbjct 370 AIESYIGHSIPVSKYNPE----ALMTDLPKPLRLTRSRPGN 406 Score = 43.2 bits (100), Expect = 0.006, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV 77 TG GKT A +L V+ + +++ L Q D Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQ------IHADAEPLA 108 Query 78 TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH 134 +G G + +L ++L L ++ H+ L ++V+DE Sbjct 109 QVTGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168 Query 135 H 135 Sbjct 169 R 169 >sp|A4WG30|RHLB_ENT38 ATP-dependent RNA helicase RhlB OS=Enterobacter sp. (strain 638) OX=399742 GN=rhlB PE=3 SV=1 Length=421 Score = 154 bits (390), Expect = 9e-40, Method: Composition-based stats. Identities = 70/363 (19%), Positives = 119/363 (33%), Gaps = 58/363 (16%) Query 207 LQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVK 264 L + ++ N P +L ++ + +L +G Y++Q+ Sbjct 71 LLSNPAMADRKVNQPRALIMAPTRELAVQIHADAEPLAQTTGLKLGLAYGGDGYDKQLKV 130 Query 265 LSEAAALAGLQEQRVYALHLRRYN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQ 319 L + R+ + + +++ + R D L ++D + Sbjct 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----R 185 Query 320 ILCAERRLLALFDD----RKNELAHLATHGPEN----PKLEMLEKILQRQFSSSNS---- 367 + +RL LF R ELA + E P+ + +I + F SN Sbjct 186 MPPTPQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMR 245 Query 368 -----------PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT 416 R IIF T+ + L R LL G + Sbjct 246 LLQTLIEEEWPDRAIIFANTKHRCEDIW------GHLAADGHRVGLLTG--------DVA 291 Query 417 QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARAD 475 Q+ + +++ F G L++LVAT VA GL IP V Y L + V GR RA Sbjct 292 QKKRLRILEDFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAG 351 Query 476 QSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAA 535 S ++ L A+ET + +V + A + +L RA Sbjct 352 ASGHSISLACEEYALN----LTAIETYIGHSVPQSKYNP----DALLSELPPPKRLTRAR 403 Query 536 QAA 538 Sbjct 404 SGN 406 Score = 45.9 bits (107), Expect = 0.001, Method: Composition-based stats. Identities = 31/157 (20%), Positives = 57/157 (36%), Gaps = 24/157 (15%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV 77 TG GKT A A +L V+ + +++ L Q D Sbjct 55 TGTGKTMAFLTSAFHYLLSNPAMADRKVNQPRALIMAPTRELAVQ------IHADAEPLA 108 Query 78 TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH 134 T +G G + +L ++L L ++ H+ L ++V+DE Sbjct 109 QTTGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEA- 167 Query 135 HTHKDTVYNVIMSQYLELKLQRAQPLPQVLGL--TAS 169 D +Y++ + + +R P PQ L + +A+ Sbjct 168 ----DRMYDLGFIKDIRWLFRRMPPTPQRLNMLFSAT 200 >sp|B5BIS9|RHLB_SALPK ATP-dependent RNA helicase RhlB OS=Salmonella paratyphi A (strain AKU_12601) OX=554290 GN=rhlB PE=3 SV=1 Length=421 Score = 154 bits (389), Expect = 1e-39, Method: Composition-based stats. Identities = 75/401 (19%), Positives = 130/401 (32%), Gaps = 58/401 (14%) Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 +P A L A V + + L H ++ N P Sbjct 33 TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAP 92 Query 229 FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR 286 +L ++ + +L +G Y++Q+ L + R+ + Sbjct 93 TRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN 152 Query 287 YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE 337 + +++ + R D L ++D ++ A +RL LF R E Sbjct 153 HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RVPPAAQRLNMLFSATLSYRVRE 207 Query 338 LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ 378 LA + E P+ + +I + F SN R IIF T+ Sbjct 208 LAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH 267 Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT 438 + L R LL G + Q+ + ++ +F G L++LVAT Sbjct 268 RCEDIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT 313 Query 439 SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE 497 VA GL IP V Y L + V GR RA S ++ L Sbjct 314 DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP 369 Query 498 ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA 538 A+E+ + ++ + + A + DL + R+ Sbjct 370 AIESYIGHSIPVSKYNPE----ALMNDLPKPLRLTRSRPGN 406 Score = 43.6 bits (101), Expect = 0.005, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV 77 TG GKT A +L V+ + +++ L Q D Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQ------IHADAEPLA 108 Query 78 TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH 134 +G G + +L ++L L ++ H+ L ++V+DE Sbjct 109 QATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168 Query 135 H 135 Sbjct 169 R 169 >sp|A3Q9R3|RHLB_SHELP ATP-dependent RNA helicase RhlB OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) OX=323850 GN=rhlB PE=3 SV=1 Length=435 Score = 154 bits (389), Expect = 1e-39, Method: Composition-based stats. Identities = 65/328 (20%), Positives = 116/328 (35%), Gaps = 62/328 (19%) Query 253 FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN-----DALLIHDTVRAVDALAALQ 307 +G + YE Q L + + R+ + A+++ + R D L ++ Sbjct 119 YGGESYEVQRKVLDKGVDILIGTTGRIIDYVRQGVINLSAIQAVVLDEADRMFD-LGFIK 177 Query 308 DFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPE---------------- 347 D ++ A RL LF + ELA+ + PE Sbjct 178 DIRFLFR----RMPDANERLNMLFSATLSMKVQELAYDHMNDPEKVEIAPSEKTSKNITE 233 Query 348 ---NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI 404 P +E ++L + I+F+ T+ S +L L+ R LL Sbjct 234 EIFYPSMEDKMRLLLTLIEEDWPEKAIVFSNTKHSCENLW------AHLEGDGHRVGLLT 287 Query 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 G + Q+ + ++++F G L++LVAT VA GL I + V Y L + Sbjct 288 G--------DVPQKKRIRILEQFTKGELDILVATDVAARGLHISDVSHVYNYDLPDDCED 339 Query 465 MVQARGR-ARADQSV--YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK 521 V GR RA Q +F E + L A+E ++ ++ + + +A Sbjct 340 YVHRIGRTGRAGQKGVSVSFACEEYALNLP------AIEHYIQHSIP----VTNYDSEAL 389 Query 522 IRDLQQAALTKRA--AQAAQRENQRQQF 547 + D+ R + R + Sbjct 390 LDDIPPPVRIHRKHSPRPTGRSGGGKPQ 417 Score = 46.3 bits (108), Expect = 7e-04, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 40/121 (33%), Gaps = 17/121 (14%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHG---EEFRRMLDGR 74 TG GKT A HL ++ + +V+ L Q E + + Sbjct 55 TGTGKTLAFLVATFNHLLTTPIPDGRQLNQPRAIVMAPTRELAIQIAKDGELLAKHTGLK 114 Query 75 WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECH 134 V + G L + D+LI T + + + + L+ +V+DE Sbjct 115 --VGIVYGGESYEVQRKVLDKGVDILIGTTGRIIDYV----RQGVINLSAIQAVVLDEAD 168 Query 135 H 135 Sbjct 169 R 169 >sp|B1KQF6|RHLB_SHEWM ATP-dependent RNA helicase RhlB OS=Shewanella woodyi (strain ATCC 51908 / MS32) OX=392500 GN=rhlB PE=3 SV=1 Length=441 Score = 154 bits (389), Expect = 2e-39, Method: Composition-based stats. Identities = 62/329 (19%), Positives = 117/329 (36%), Gaps = 63/329 (19%) Query 253 FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR-----RYNDALLIHDTVRAVDALAALQ 307 +G + Y+ Q L + + R+ + A+++ + R D L ++ Sbjct 119 YGGESYDVQRKVLDKGVDILIGTTGRIIDYVRQGIINLSAIQAVVLDEADRMFD-LGFIK 177 Query 308 DFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPE---------------- 347 D ++ A+ RL LF + ELA+ + PE Sbjct 178 DIRFLFR----RMPDAKSRLNMLFSATLSMKVQELAYDHMNEPEKVVIAPNEKTSKNIKE 233 Query 348 ---NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI 404 P ++ ++L + I+F+ T+ S ++ WL + R LL Sbjct 234 EIFYPSMDEKMRLLLSLIEEDWPEKAIVFSNTKHSCENVWSWL------EGDGHRVGLLT 287 Query 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 G + Q+ + ++++F +G L++LVAT VA GL I + V Y L + Sbjct 288 G--------DVPQKKRIRILEQFTEGKLDILVATDVAARGLHISDVSHVYNYDLPDDCED 339 Query 465 MVQARGR-ARADQSV--YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK 521 V GR RA + +F E + L A+E + ++ + + + Sbjct 340 YVHRIGRTGRAGKKGVSVSFACEEYALNLP------AIEEYITHSIP----VTNYDSEGL 389 Query 522 IRDLQQAALTKRA---AQAAQRENQRQQF 547 + D+ R R N + Sbjct 390 LDDIPAPIRVHRKHNNRPQQGRNNSGRPQ 418 Score = 43.2 bits (100), Expect = 0.006, Method: Composition-based stats. Identities = 28/194 (14%), Positives = 60/194 (31%), Gaps = 23/194 (12%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEE---FRRMLDGR 74 TG GKT A HL ++ + +++ L Q ++ + + Sbjct 55 TGTGKTLAFLVATFDHLLSTPVPEGRQLNQPRAMIMAPTRELAIQIAKDATLLAKHTGLK 114 Query 75 WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECH 134 V + G L + D+LI T + + + + L+ +V+DE Sbjct 115 --VGIVYGGESYDVQRKVLDKGVDILIGTTGRIIDYV----RQGIINLSAIQAVVLDEAD 168 Query 135 HTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDT 194 D + + L + T S + A +H+ + + Sbjct 169 R-MFDLGFIKDIRFLFRRMPDAKSRLNMLFSATLS-----MKVQELAYDHMNEPEKVVIA 222 Query 195 WCIMSPQNCCPQLQ 208 + +N ++ Sbjct 223 PNEKTSKNIKEEIF 236 >sp|A7MQI2|RHLB_CROS8 ATP-dependent RNA helicase RhlB OS=Cronobacter sakazakii (strain ATCC BAA-894) OX=290339 GN=rhlB PE=3 SV=1 Length=421 Score = 154 bits (388), Expect = 2e-39, Method: Composition-based stats. Identities = 77/401 (19%), Positives = 126/401 (31%), Gaps = 58/401 (14%) Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 +P A L A V + + L H +Q N P Sbjct 33 TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAAENRQVNQPRALIMAP 92 Query 229 FGDLLKKLMDQIHDHLEMP--ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR 286 +L ++ E +L +G Y++Q+ L + R+ + Sbjct 93 TRELAVQIHSDAEPLAEATGIKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYTKQN 152 Query 287 YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE 337 + +++ + R D L ++D ++ A RL LF R E Sbjct 153 HVNLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPAATERLNMLFSATLSYRVRE 207 Query 338 LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ 378 LA + E P+ + +I + F SN R IIF T+ Sbjct 208 LAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH 267 Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT 438 + L R LL G + Q+ + ++ +F G L++LVAT Sbjct 268 RCEDIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT 313 Query 439 SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE 497 VA GL IP V Y L + V GR RA S ++ L Sbjct 314 DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP 369 Query 498 ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA 538 A+ET + ++ + A + +L R Sbjct 370 AIETYIGHSIPVSKYNP----DALLSELPPPKRLSRPRTGN 406 Score = 43.6 bits (101), Expect = 0.005, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 41/119 (34%), Gaps = 13/119 (11%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV 77 TG GKT A +L V+ + +++ L Q + + + Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAAENRQVNQPRALIMAPTRELAVQIHSDAEPLAEATGIK 114 Query 78 TTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH 135 L+ G G L D+LI T L ++ HV L ++V+DE Sbjct 115 LGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDY----TKQNHVNLGAIQVVVLDEADR 169 >sp|Q9CJS1|RHLB_PASMU ATP-dependent RNA helicase RhlB OS=Pasteurella multocida (strain Pm70) OX=272843 GN=rhlB PE=3 SV=1 Length=423 Score = 154 bits (388), Expect = 2e-39, Method: Composition-based stats. Identities = 63/296 (21%), Positives = 108/296 (36%), Gaps = 56/296 (19%) Query 247 PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN-----DALLIHDTVRAVD 301 + +G YE+Q+ + + + RV + +++ + R D Sbjct 111 LKTGLAYGGDGYEKQLKAIEQGVDILIGTTGRVIDYVKQGIVRLDKIQVVVLDEADRMFD 170 Query 302 ALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPENPKLEML--- 354 L ++D + + + RL LF + ELA + PE ++E L Sbjct 171 -LGFIKDIRY----LLRKCPAPQHRLTMLFSATLSYKVRELAFEDMNDPEYVEIEPLQKT 225 Query 355 -EKILQRQFSSSNSP---------------RGIIFTRTRQSAHSLLLWLQQQQGLQTVDI 398 +I + F SN R IIF T+ + +L Sbjct 226 GHRIKEELFYPSNQDKMALLLTLLEEEWPERCIIFANTKHRCEDIWGYL------AADGH 279 Query 399 RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL 458 R LL G + Q+ + ++++F +G L++LVAT VA GL I + V Y L Sbjct 280 RVGLLTG--------DVAQKKRLSLLKQFTEGHLDILVATDVAARGLHISDVSHVFNYDL 331 Query 459 LTNEISMVQARGR-ARADQSV--YAFVATEGSRELKRELINEALETLMEQAVAAVQ 511 + V GR RA +S +F E + L A+E + ++ Q Sbjct 332 PDDREDYVHRIGRTGRAGESGVSISFACEEYAMNLP------AIEEYISHSIPVSQ 381 Score = 45.9 bits (107), Expect = 8e-04, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 42/117 (36%), Gaps = 11/117 (9%) Query 26 TGAGKTRAAAYVAKRHLETVDGAK------VVVLVNRVHLVTQHGEEFRRMLDGRWTVTT 79 TG GKT A HL T G K ++L L Q + + T Sbjct 55 TGTGKTMAFLTATFHHLLTQQGDKGGRQPRALILAPTRELAVQINNDAALLTKATGLKTG 114 Query 80 LS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH 135 L+ G G + + D+LI T + + ++ V L ++V+DE Sbjct 115 LAYGGDGYEKQLKAIEQGVDILIGTTGRVIDYV----KQGIVRLDKIQVVVLDEADR 167 >sp|Q329V8|RHLB_SHIDS ATP-dependent RNA helicase RhlB OS=Shigella dysenteriae serotype 1 (strain Sd197) OX=300267 GN=rhlB PE=3 SV=1 Length=421 Score = 153 bits (387), Expect = 2e-39, Method: Composition-based stats. Identities = 72/363 (20%), Positives = 120/363 (33%), Gaps = 58/363 (16%) Query 207 LQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVK 264 L H ++ N P +L ++ E +L +G Y++Q+ Sbjct 71 LLSHPAIADRKVNKPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKV 130 Query 265 LSEAAALAGLQEQRVYALHLRRYN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQ 319 L + R+ + + +++ + R D L ++D + Sbjct 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----R 185 Query 320 ILCAERRLLALFDD----RKNELAHLATHGPEN----PKLEMLEKILQRQFSSSNS---- 367 + A +RL LF R ELA + E P+ + +I + F SN Sbjct 186 MPPANQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMR 245 Query 368 -----------PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT 416 R IIF T+ + L R LL G + Sbjct 246 LLQTLIEEEWPDRAIIFANTKHRCEEIW------GHLAADGHRVGLLTG--------DVA 291 Query 417 QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARAD 475 Q+ + ++ +F G L++LVAT VA GL IP V Y L + V GR RA Sbjct 292 QKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAG 351 Query 476 QSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAA 535 S ++ L A+ET + ++ + A + DL + R Sbjct 352 ASGHSISLACEEYALN----LPAIETYIGHSIPVSKYNP----DALMTDLPKPLRLTRPR 403 Query 536 QAA 538 Sbjct 404 TGN 406 Score = 45.9 bits (107), Expect = 0.001, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV 77 TG GKT A +L V+ + +++ L Q D Sbjct 55 TGTGKTMAFLTSMFHYLLSHPAIADRKVNKPRALIMAPTRELAVQ------IHADAEPLA 108 Query 78 TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH 134 +G G + +L ++L L ++ H+ L ++V+DE Sbjct 109 EATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168 Query 135 H 135 Sbjct 169 R 169 >sp|Q3YVI4|RHLB_SHISS ATP-dependent RNA helicase RhlB OS=Shigella sonnei (strain Ss046) OX=300269 GN=rhlB PE=3 SV=1 Length=421 Score = 153 bits (387), Expect = 2e-39, Method: Composition-based stats. Identities = 77/401 (19%), Positives = 128/401 (32%), Gaps = 58/401 (14%) Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 +P A L A V + + L H ++ N P Sbjct 33 TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAP 92 Query 229 FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR 286 +L ++ E +L +G Y++Q+ L + R+ + Sbjct 93 TRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN 152 Query 287 YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE 337 + +++ + R D L ++D ++ A +RL LF R E Sbjct 153 HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPANQRLNMLFSATLSYRVRE 207 Query 338 LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ 378 LA + E P+ + +I + F SN R IIF T+ Sbjct 208 LAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH 267 Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT 438 + L R LL G + Q+ + ++ +F G L++LVAT Sbjct 268 RCEEIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT 313 Query 439 SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE 497 VA GL IP V Y L + V GR RA S ++ L Sbjct 314 DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP 369 Query 498 ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA 538 A+ET + ++ + A + DL + R Sbjct 370 AIETYIGHSIPVSKYNP----DALMTDLPKPLRLTRPRTGN 406 Score = 43.2 bits (100), Expect = 0.007, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV 77 TG GKT A +L V+ + +++ L Q D Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQ------IHADAEPLA 108 Query 78 TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH 134 +G G + +L ++L L ++ H+ L ++V+DE Sbjct 109 EATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168 Query 135 H 135 Sbjct 169 R 169 >sp|P0A8K0|RHLB_SHIFL ATP-dependent RNA helicase RhlB OS=Shigella flexneri OX=623 GN=rhlB PE=3 SV=2 Length=421 Score = 153 bits (387), Expect = 2e-39, Method: Composition-based stats. Identities = 77/401 (19%), Positives = 128/401 (32%), Gaps = 58/401 (14%) Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 +P A L A V + + L H ++ N P Sbjct 33 TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAP 92 Query 229 FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR 286 +L ++ E +L +G Y++Q+ L + R+ + Sbjct 93 TRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN 152 Query 287 YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE 337 + +++ + R D L ++D ++ A +RL LF R E Sbjct 153 HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPANQRLNMLFSATLSYRVRE 207 Query 338 LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ 378 LA + E P+ + +I + F SN R IIF T+ Sbjct 208 LAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH 267 Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT 438 + L R LL G + Q+ + ++ +F G L++LVAT Sbjct 268 RCEEIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT 313 Query 439 SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE 497 VA GL IP V Y L + V GR RA S ++ L Sbjct 314 DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP 369 Query 498 ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA 538 A+ET + ++ + A + DL + R Sbjct 370 AIETYIGHSIPVSKYNP----DALMTDLPKPLRLTRPRTGN 406 Score = 43.2 bits (100), Expect = 0.007, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV 77 TG GKT A +L V+ + +++ L Q D Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQ------IHADAEPLA 108 Query 78 TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH 134 +G G + +L ++L L ++ H+ L ++V+DE Sbjct 109 EATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168 Query 135 H 135 Sbjct 169 R 169 >sp|Q1R4F9|RHLB_ECOUT ATP-dependent RNA helicase RhlB OS=Escherichia coli (strain UTI89 / UPEC) OX=364106 GN=rhlB PE=3 SV=1 Length=421 Score = 153 bits (387), Expect = 2e-39, Method: Composition-based stats. Identities = 77/401 (19%), Positives = 128/401 (32%), Gaps = 58/401 (14%) Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 +P A L A V + + L H ++ N P Sbjct 33 TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAP 92 Query 229 FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR 286 +L ++ E +L +G Y++Q+ L + R+ + Sbjct 93 TRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN 152 Query 287 YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE 337 + +++ + R D L ++D ++ A +RL LF R E Sbjct 153 HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPANQRLNMLFSATLSYRVRE 207 Query 338 LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ 378 LA + E P+ + +I + F SN R IIF T+ Sbjct 208 LAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH 267 Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT 438 + L R LL G + Q+ + ++ +F G L++LVAT Sbjct 268 RCEEIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT 313 Query 439 SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE 497 VA GL IP V Y L + V GR RA S ++ L Sbjct 314 DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP 369 Query 498 ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA 538 A+ET + ++ + A + DL + R Sbjct 370 AIETYIGHSIPVSKYNP----DALMTDLPKPLRLTRPRTGN 406 Score = 43.2 bits (100), Expect = 0.007, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV 77 TG GKT A +L V+ + +++ L Q D Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQ------IHADAEPLA 108 Query 78 TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH 134 +G G + +L ++L L ++ H+ L ++V+DE Sbjct 109 EATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168 Query 135 H 135 Sbjct 169 R 169 >sp|B6I4B6|RHLB_ECOSE ATP-dependent RNA helicase RhlB OS=Escherichia coli (strain SE11) OX=409438 GN=rhlB PE=3 SV=1 Length=421 Score = 153 bits (387), Expect = 2e-39, Method: Composition-based stats. Identities = 77/401 (19%), Positives = 128/401 (32%), Gaps = 58/401 (14%) Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 +P A L A V + + L H ++ N P Sbjct 33 TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAP 92 Query 229 FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR 286 +L ++ E +L +G Y++Q+ L + R+ + Sbjct 93 TRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN 152 Query 287 YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE 337 + +++ + R D L ++D ++ A +RL LF R E Sbjct 153 HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPANQRLNMLFSATLSYRVRE 207 Query 338 LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ 378 LA + E P+ + +I + F SN R IIF T+ Sbjct 208 LAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH 267 Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT 438 + L R LL G + Q+ + ++ +F G L++LVAT Sbjct 268 RCEEIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT 313 Query 439 SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE 497 VA GL IP V Y L + V GR RA S ++ L Sbjct 314 DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP 369 Query 498 ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA 538 A+ET + ++ + A + DL + R Sbjct 370 AIETYIGHSIPVSKYNP----DALMTDLPKPLRLTRPRTGN 406 Score = 43.2 bits (100), Expect = 0.007, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV 77 TG GKT A +L V+ + +++ L Q D Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQ------IHADAEPLA 108 Query 78 TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH 134 +G G + +L ++L L ++ H+ L ++V+DE Sbjct 109 EATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168 Query 135 H 135 Sbjct 169 R 169 >sp|P0A8J8|RHLB_ECOLI ATP-dependent RNA helicase RhlB OS=Escherichia coli (strain K12) OX=83333 GN=rhlB PE=1 SV=2 Length=421 Score = 153 bits (387), Expect = 2e-39, Method: Composition-based stats. Identities = 77/401 (19%), Positives = 128/401 (32%), Gaps = 58/401 (14%) Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 +P A L A V + + L H ++ N P Sbjct 33 TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAP 92 Query 229 FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR 286 +L ++ E +L +G Y++Q+ L + R+ + Sbjct 93 TRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN 152 Query 287 YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE 337 + +++ + R D L ++D ++ A +RL LF R E Sbjct 153 HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPANQRLNMLFSATLSYRVRE 207 Query 338 LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ 378 LA + E P+ + +I + F SN R IIF T+ Sbjct 208 LAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH 267 Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT 438 + L R LL G + Q+ + ++ +F G L++LVAT Sbjct 268 RCEEIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT 313 Query 439 SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE 497 VA GL IP V Y L + V GR RA S ++ L Sbjct 314 DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP 369 Query 498 ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA 538 A+ET + ++ + A + DL + R Sbjct 370 AIETYIGHSIPVSKYNP----DALMTDLPKPLRLTRPRTGN 406 Score = 43.2 bits (100), Expect = 0.007, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV 77 TG GKT A +L V+ + +++ L Q D Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQ------IHADAEPLA 108 Query 78 TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH 134 +G G + +L ++L L ++ H+ L ++V+DE Sbjct 109 EATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168 Query 135 H 135 Sbjct 169 R 169 >sp|B1IWC0|RHLB_ECOLC ATP-dependent RNA helicase RhlB OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks) OX=481805 GN=rhlB PE=3 SV=1 Length=421 Score = 153 bits (387), Expect = 2e-39, Method: Composition-based stats. Identities = 77/401 (19%), Positives = 128/401 (32%), Gaps = 58/401 (14%) Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 +P A L A V + + L H ++ N P Sbjct 33 TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAP 92 Query 229 FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR 286 +L ++ E +L +G Y++Q+ L + R+ + Sbjct 93 TRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN 152 Query 287 YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE 337 + +++ + R D L ++D ++ A +RL LF R E Sbjct 153 HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPANQRLNMLFSATLSYRVRE 207 Query 338 LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ 378 LA + E P+ + +I + F SN R IIF T+ Sbjct 208 LAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH 267 Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT 438 + L R LL G + Q+ + ++ +F G L++LVAT Sbjct 268 RCEEIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT 313 Query 439 SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE 497 VA GL IP V Y L + V GR RA S ++ L Sbjct 314 DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP 369 Query 498 ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA 538 A+ET + ++ + A + DL + R Sbjct 370 AIETYIGHSIPVSKYNP----DALMTDLPKPLRLTRPRTGN 406 Score = 43.2 bits (100), Expect = 0.007, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV 77 TG GKT A +L V+ + +++ L Q D Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQ------IHADAEPLA 108 Query 78 TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH 134 +G G + +L ++L L ++ H+ L ++V+DE Sbjct 109 EATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168 Query 135 H 135 Sbjct 169 R 169 >sp|P0A8J9|RHLB_ECOL6 ATP-dependent RNA helicase RhlB OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=rhlB PE=3 SV=2 Length=421 Score = 153 bits (387), Expect = 2e-39, Method: Composition-based stats. Identities = 77/401 (19%), Positives = 128/401 (32%), Gaps = 58/401 (14%) Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 +P A L A V + + L H ++ N P Sbjct 33 TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAP 92 Query 229 FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR 286 +L ++ E +L +G Y++Q+ L + R+ + Sbjct 93 TRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN 152 Query 287 YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE 337 + +++ + R D L ++D ++ A +RL LF R E Sbjct 153 HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPANQRLNMLFSATLSYRVRE 207 Query 338 LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ 378 LA + E P+ + +I + F SN R IIF T+ Sbjct 208 LAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH 267 Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT 438 + L R LL G + Q+ + ++ +F G L++LVAT Sbjct 268 RCEEIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT 313 Query 439 SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE 497 VA GL IP V Y L + V GR RA S ++ L Sbjct 314 DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP 369 Query 498 ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA 538 A+ET + ++ + A + DL + R Sbjct 370 AIETYIGHSIPVSKYNP----DALMTDLPKPLRLTRPRTGN 406 Score = 43.2 bits (100), Expect = 0.007, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV 77 TG GKT A +L V+ + +++ L Q D Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQ------IHADAEPLA 108 Query 78 TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH 134 +G G + +L ++L L ++ H+ L ++V+DE Sbjct 109 EATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168 Query 135 H 135 Sbjct 169 R 169 >sp|Q0TAU3|RHLB_ECOL5 ATP-dependent RNA helicase RhlB OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) OX=362663 GN=rhlB PE=3 SV=1 Length=421 Score = 153 bits (387), Expect = 2e-39, Method: Composition-based stats. Identities = 77/401 (19%), Positives = 128/401 (32%), Gaps = 58/401 (14%) Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 +P A L A V + + L H ++ N P Sbjct 33 TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAP 92 Query 229 FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR 286 +L ++ E +L +G Y++Q+ L + R+ + Sbjct 93 TRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN 152 Query 287 YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE 337 + +++ + R D L ++D ++ A +RL LF R E Sbjct 153 HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPANQRLNMLFSATLSYRVRE 207 Query 338 LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ 378 LA + E P+ + +I + F SN R IIF T+ Sbjct 208 LAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH 267 Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT 438 + L R LL G + Q+ + ++ +F G L++LVAT Sbjct 268 RCEEIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT 313 Query 439 SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE 497 VA GL IP V Y L + V GR RA S ++ L Sbjct 314 DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP 369 Query 498 ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA 538 A+ET + ++ + A + DL + R Sbjct 370 AIETYIGHSIPVSKYNP----DALMTDLPKPLRLTRPRTGN 406 Score = 43.2 bits (100), Expect = 0.007, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV 77 TG GKT A +L V+ + +++ L Q D Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQ------IHADAEPLA 108 Query 78 TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH 134 +G G + +L ++L L ++ H+ L ++V+DE Sbjct 109 EATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168 Query 135 H 135 Sbjct 169 R 169 >sp|A1AHV0|RHLB_ECOK1 ATP-dependent RNA helicase RhlB OS=Escherichia coli O1:K1 / APEC OX=405955 GN=rhlB PE=3 SV=1 Length=421 Score = 153 bits (387), Expect = 2e-39, Method: Composition-based stats. Identities = 77/401 (19%), Positives = 128/401 (32%), Gaps = 58/401 (14%) Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 +P A L A V + + L H ++ N P Sbjct 33 TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAP 92 Query 229 FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR 286 +L ++ E +L +G Y++Q+ L + R+ + Sbjct 93 TRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN 152 Query 287 YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE 337 + +++ + R D L ++D ++ A +RL LF R E Sbjct 153 HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPANQRLNMLFSATLSYRVRE 207 Query 338 LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ 378 LA + E P+ + +I + F SN R IIF T+ Sbjct 208 LAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH 267 Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT 438 + L R LL G + Q+ + ++ +F G L++LVAT Sbjct 268 RCEEIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT 313 Query 439 SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE 497 VA GL IP V Y L + V GR RA S ++ L Sbjct 314 DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP 369 Query 498 ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA 538 A+ET + ++ + A + DL + R Sbjct 370 AIETYIGHSIPVSKYNP----DALMTDLPKPLRLTRPRTGN 406 Score = 43.2 bits (100), Expect = 0.007, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV 77 TG GKT A +L V+ + +++ L Q D Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQ------IHADAEPLA 108 Query 78 TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH 134 +G G + +L ++L L ++ H+ L ++V+DE Sbjct 109 EATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168 Query 135 H 135 Sbjct 169 R 169 >sp|A8A6N4|RHLB_ECOHS ATP-dependent RNA helicase RhlB OS=Escherichia coli O9:H4 (strain HS) OX=331112 GN=rhlB PE=3 SV=1 Length=421 Score = 153 bits (387), Expect = 2e-39, Method: Composition-based stats. Identities = 77/401 (19%), Positives = 128/401 (32%), Gaps = 58/401 (14%) Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 +P A L A V + + L H ++ N P Sbjct 33 TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAP 92 Query 229 FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR 286 +L ++ E +L +G Y++Q+ L + R+ + Sbjct 93 TRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN 152 Query 287 YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE 337 + +++ + R D L ++D ++ A +RL LF R E Sbjct 153 HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPANQRLNMLFSATLSYRVRE 207 Query 338 LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ 378 LA + E P+ + +I + F SN R IIF T+ Sbjct 208 LAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH 267 Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT 438 + L R LL G + Q+ + ++ +F G L++LVAT Sbjct 268 RCEEIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT 313 Query 439 SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE 497 VA GL IP V Y L + V GR RA S ++ L Sbjct 314 DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP 369 Query 498 ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA 538 A+ET + ++ + A + DL + R Sbjct 370 AIETYIGHSIPVSKYNP----DALMTDLPKPLRLTRPRTGN 406 Score = 43.2 bits (100), Expect = 0.007, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV 77 TG GKT A +L V+ + +++ L Q D Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQ------IHADAEPLA 108 Query 78 TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH 134 +G G + +L ++L L ++ H+ L ++V+DE Sbjct 109 EATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168 Query 135 H 135 Sbjct 169 R 169 >sp|B1X9Z4|RHLB_ECODH ATP-dependent RNA helicase RhlB OS=Escherichia coli (strain K12 / DH10B) OX=316385 GN=rhlB PE=3 SV=1 Length=421 Score = 153 bits (387), Expect = 2e-39, Method: Composition-based stats. Identities = 77/401 (19%), Positives = 128/401 (32%), Gaps = 58/401 (14%) Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 +P A L A V + + L H ++ N P Sbjct 33 TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAP 92 Query 229 FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR 286 +L ++ E +L +G Y++Q+ L + R+ + Sbjct 93 TRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN 152 Query 287 YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE 337 + +++ + R D L ++D ++ A +RL LF R E Sbjct 153 HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPANQRLNMLFSATLSYRVRE 207 Query 338 LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ 378 LA + E P+ + +I + F SN R IIF T+ Sbjct 208 LAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH 267 Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT 438 + L R LL G + Q+ + ++ +F G L++LVAT Sbjct 268 RCEEIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT 313 Query 439 SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE 497 VA GL IP V Y L + V GR RA S ++ L Sbjct 314 DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP 369 Query 498 ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA 538 A+ET + ++ + A + DL + R Sbjct 370 AIETYIGHSIPVSKYNP----DALMTDLPKPLRLTRPRTGN 406 Score = 43.2 bits (100), Expect = 0.007, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV 77 TG GKT A +L V+ + +++ L Q D Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQ------IHADAEPLA 108 Query 78 TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH 134 +G G + +L ++L L ++ H+ L ++V+DE Sbjct 109 EATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168 Query 135 H 135 Sbjct 169 R 169 >sp|C4ZZ48|RHLB_ECOBW ATP-dependent RNA helicase RhlB OS=Escherichia coli (strain K12 / MC4100 / BW2952) OX=595496 GN=rhlB PE=3 SV=1 Length=421 Score = 153 bits (387), Expect = 2e-39, Method: Composition-based stats. Identities = 77/401 (19%), Positives = 128/401 (32%), Gaps = 58/401 (14%) Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 +P A L A V + + L H ++ N P Sbjct 33 TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAP 92 Query 229 FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR 286 +L ++ E +L +G Y++Q+ L + R+ + Sbjct 93 TRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN 152 Query 287 YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE 337 + +++ + R D L ++D ++ A +RL LF R E Sbjct 153 HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPANQRLNMLFSATLSYRVRE 207 Query 338 LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ 378 LA + E P+ + +I + F SN R IIF T+ Sbjct 208 LAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH 267 Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT 438 + L R LL G + Q+ + ++ +F G L++LVAT Sbjct 268 RCEEIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT 313 Query 439 SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE 497 VA GL IP V Y L + V GR RA S ++ L Sbjct 314 DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP 369 Query 498 ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA 538 A+ET + ++ + A + DL + R Sbjct 370 AIETYIGHSIPVSKYNP----DALMTDLPKPLRLTRPRTGN 406 Score = 43.2 bits (100), Expect = 0.007, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV 77 TG GKT A +L V+ + +++ L Q D Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQ------IHADAEPLA 108 Query 78 TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH 134 +G G + +L ++L L ++ H+ L ++V+DE Sbjct 109 EATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168 Query 135 H 135 Sbjct 169 R 169 >sp|B7M5C7|RHLB_ECO8A ATP-dependent RNA helicase RhlB OS=Escherichia coli O8 (strain IAI1) OX=585034 GN=rhlB PE=3 SV=1 Length=421 Score = 153 bits (387), Expect = 2e-39, Method: Composition-based stats. Identities = 77/401 (19%), Positives = 128/401 (32%), Gaps = 58/401 (14%) Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 +P A L A V + + L H ++ N P Sbjct 33 TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAP 92 Query 229 FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR 286 +L ++ E +L +G Y++Q+ L + R+ + Sbjct 93 TRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN 152 Query 287 YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE 337 + +++ + R D L ++D ++ A +RL LF R E Sbjct 153 HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPANQRLNMLFSATLSYRVRE 207 Query 338 LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ 378 LA + E P+ + +I + F SN R IIF T+ Sbjct 208 LAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH 267 Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT 438 + L R LL G + Q+ + ++ +F G L++LVAT Sbjct 268 RCEEIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT 313 Query 439 SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE 497 VA GL IP V Y L + V GR RA S ++ L Sbjct 314 DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP 369 Query 498 ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA 538 A+ET + ++ + A + DL + R Sbjct 370 AIETYIGHSIPVSKYNP----DALMTDLPKPLRLTRPRTGN 406 Score = 43.2 bits (100), Expect = 0.007, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV 77 TG GKT A +L V+ + +++ L Q D Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQ------IHADAEPLA 108 Query 78 TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH 134 +G G + +L ++L L ++ H+ L ++V+DE Sbjct 109 EATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168 Query 135 H 135 Sbjct 169 R 169 >sp|B7MR01|RHLB_ECO81 ATP-dependent RNA helicase RhlB OS=Escherichia coli O81 (strain ED1a) OX=585397 GN=rhlB PE=3 SV=1 Length=421 Score = 153 bits (387), Expect = 2e-39, Method: Composition-based stats. Identities = 77/401 (19%), Positives = 128/401 (32%), Gaps = 58/401 (14%) Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 +P A L A V + + L H ++ N P Sbjct 33 TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAP 92 Query 229 FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR 286 +L ++ E +L +G Y++Q+ L + R+ + Sbjct 93 TRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN 152 Query 287 YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE 337 + +++ + R D L ++D ++ A +RL LF R E Sbjct 153 HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPANQRLNMLFSATLSYRVRE 207 Query 338 LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ 378 LA + E P+ + +I + F SN R IIF T+ Sbjct 208 LAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH 267 Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT 438 + L R LL G + Q+ + ++ +F G L++LVAT Sbjct 268 RCEEIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT 313 Query 439 SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE 497 VA GL IP V Y L + V GR RA S ++ L Sbjct 314 DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP 369 Query 498 ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA 538 A+ET + ++ + A + DL + R Sbjct 370 AIETYIGHSIPVSKYNP----DALMTDLPKPLRLTRPRTGN 406 Score = 43.2 bits (100), Expect = 0.007, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV 77 TG GKT A +L V+ + +++ L Q D Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQ------IHADAEPLA 108 Query 78 TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH 134 +G G + +L ++L L ++ H+ L ++V+DE Sbjct 109 EATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168 Query 135 H 135 Sbjct 169 R 169 >sp|B7L8B6|RHLB_ECO55 ATP-dependent RNA helicase RhlB OS=Escherichia coli (strain 55989 / EAEC) OX=585055 GN=rhlB PE=3 SV=1 Length=421 Score = 153 bits (387), Expect = 2e-39, Method: Composition-based stats. Identities = 77/401 (19%), Positives = 128/401 (32%), Gaps = 58/401 (14%) Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 +P A L A V + + L H ++ N P Sbjct 33 TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAP 92 Query 229 FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR 286 +L ++ E +L +G Y++Q+ L + R+ + Sbjct 93 TRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN 152 Query 287 YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE 337 + +++ + R D L ++D ++ A +RL LF R E Sbjct 153 HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPANQRLNMLFSATLSYRVRE 207 Query 338 LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ 378 LA + E P+ + +I + F SN R IIF T+ Sbjct 208 LAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH 267 Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT 438 + L R LL G + Q+ + ++ +F G L++LVAT Sbjct 268 RCEEIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT 313 Query 439 SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE 497 VA GL IP V Y L + V GR RA S ++ L Sbjct 314 DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP 369 Query 498 ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA 538 A+ET + ++ + A + DL + R Sbjct 370 AIETYIGHSIPVSKYNP----DALMTDLPKPLRLTRPRTGN 406 Score = 43.2 bits (100), Expect = 0.007, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV 77 TG GKT A +L V+ + +++ L Q D Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQ------IHADAEPLA 108 Query 78 TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH 134 +G G + +L ++L L ++ H+ L ++V+DE Sbjct 109 EATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168 Query 135 H 135 Sbjct 169 R 169 >sp|B7MGJ1|RHLB_ECO45 ATP-dependent RNA helicase RhlB OS=Escherichia coli O45:K1 (strain S88 / ExPEC) OX=585035 GN=rhlB PE=3 SV=1 Length=421 Score = 153 bits (387), Expect = 2e-39, Method: Composition-based stats. Identities = 77/401 (19%), Positives = 128/401 (32%), Gaps = 58/401 (14%) Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 +P A L A V + + L H ++ N P Sbjct 33 TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAP 92 Query 229 FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR 286 +L ++ E +L +G Y++Q+ L + R+ + Sbjct 93 TRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN 152 Query 287 YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE 337 + +++ + R D L ++D ++ A +RL LF R E Sbjct 153 HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPANQRLNMLFSATLSYRVRE 207 Query 338 LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ 378 LA + E P+ + +I + F SN R IIF T+ Sbjct 208 LAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH 267 Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT 438 + L R LL G + Q+ + ++ +F G L++LVAT Sbjct 268 RCEEIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT 313 Query 439 SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE 497 VA GL IP V Y L + V GR RA S ++ L Sbjct 314 DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP 369 Query 498 ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA 538 A+ET + ++ + A + DL + R Sbjct 370 AIETYIGHSIPVSKYNP----DALMTDLPKPLRLTRPRTGN 406 Score = 43.2 bits (100), Expect = 0.007, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV 77 TG GKT A +L V+ + +++ L Q D Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQ------IHADAEPLA 108 Query 78 TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH 134 +G G + +L ++L L ++ H+ L ++V+DE Sbjct 109 EATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168 Query 135 H 135 Sbjct 169 R 169 >sp|B7UMN5|RHLB_ECO27 ATP-dependent RNA helicase RhlB OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) OX=574521 GN=rhlB PE=3 SV=1 Length=421 Score = 153 bits (387), Expect = 2e-39, Method: Composition-based stats. Identities = 77/401 (19%), Positives = 128/401 (32%), Gaps = 58/401 (14%) Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 +P A L A V + + L H ++ N P Sbjct 33 TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAP 92 Query 229 FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR 286 +L ++ E +L +G Y++Q+ L + R+ + Sbjct 93 TRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN 152 Query 287 YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE 337 + +++ + R D L ++D ++ A +RL LF R E Sbjct 153 HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPANQRLNMLFSATLSYRVRE 207 Query 338 LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ 378 LA + E P+ + +I + F SN R IIF T+ Sbjct 208 LAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH 267 Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT 438 + L R LL G + Q+ + ++ +F G L++LVAT Sbjct 268 RCEEIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT 313 Query 439 SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE 497 VA GL IP V Y L + V GR RA S ++ L Sbjct 314 DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP 369 Query 498 ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA 538 A+ET + ++ + A + DL + R Sbjct 370 AIETYIGHSIPVSKYNP----DALMTDLPKPLRLTRPRTGN 406 Score = 43.2 bits (100), Expect = 0.007, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV 77 TG GKT A +L V+ + +++ L Q D Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQ------IHADAEPLA 108 Query 78 TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH 134 +G G + +L ++L L ++ H+ L ++V+DE Sbjct 109 EATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168 Query 135 H 135 Sbjct 169 R 169 >sp|A7ZTY2|RHLB_ECO24 ATP-dependent RNA helicase RhlB OS=Escherichia coli O139:H28 (strain E24377A / ETEC) OX=331111 GN=rhlB PE=3 SV=1 Length=421 Score = 153 bits (387), Expect = 2e-39, Method: Composition-based stats. Identities = 77/401 (19%), Positives = 128/401 (32%), Gaps = 58/401 (14%) Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 +P A L A V + + L H ++ N P Sbjct 33 TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAP 92 Query 229 FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR 286 +L ++ E +L +G Y++Q+ L + R+ + Sbjct 93 TRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN 152 Query 287 YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE 337 + +++ + R D L ++D ++ A +RL LF R E Sbjct 153 HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPANQRLNMLFSATLSYRVRE 207 Query 338 LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ 378 LA + E P+ + +I + F SN R IIF T+ Sbjct 208 LAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH 267 Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT 438 + L R LL G + Q+ + ++ +F G L++LVAT Sbjct 268 RCEEIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT 313 Query 439 SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE 497 VA GL IP V Y L + V GR RA S ++ L Sbjct 314 DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP 369 Query 498 ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA 538 A+ET + ++ + A + DL + R Sbjct 370 AIETYIGHSIPVSKYNP----DALMTDLPKPLRLTRPRTGN 406 Score = 43.2 bits (100), Expect = 0.007, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV 77 TG GKT A +L V+ + +++ L Q D Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQ------IHADAEPLA 108 Query 78 TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH 134 +G G + +L ++L L ++ H+ L ++V+DE Sbjct 109 EATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168 Query 135 H 135 Sbjct 169 R 169 >sp|Q31UK5|RHLB_SHIBS ATP-dependent RNA helicase RhlB OS=Shigella boydii serotype 4 (strain Sb227) OX=300268 GN=rhlB PE=3 SV=1 Length=421 Score = 153 bits (386), Expect = 3e-39, Method: Composition-based stats. Identities = 77/401 (19%), Positives = 128/401 (32%), Gaps = 58/401 (14%) Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 +P A L A V + + L H ++ N P Sbjct 33 TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAP 92 Query 229 FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR 286 +L ++ E +L +G Y++Q+ L + R+ + Sbjct 93 TRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN 152 Query 287 YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE 337 + +++ + R D L ++D ++ A +RL LF R E Sbjct 153 HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPANQRLNMLFSATLSYRVRE 207 Query 338 LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ 378 LA + E P+ + +I + F SN R IIF T+ Sbjct 208 LAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH 267 Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT 438 + L R LL G + Q+ + ++ +F G L++LVAT Sbjct 268 RCEEIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT 313 Query 439 SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE 497 VA GL IP V Y L + V GR RA S ++ L Sbjct 314 DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP 369 Query 498 ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA 538 A+ET + ++ + A + DL + R Sbjct 370 AIETYIGHSIPVSKYNP----DALMTDLPKPLRLTRPRTGN 406 Score = 43.2 bits (100), Expect = 0.007, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV 77 TG GKT A +L V+ + +++ L Q D Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQ------IHADAEPLA 108 Query 78 TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH 134 +G G + +L ++L L ++ H+ L ++V+DE Sbjct 109 EATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168 Query 135 H 135 Sbjct 169 R 169 >sp|B2TU12|RHLB_SHIB3 ATP-dependent RNA helicase RhlB OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) OX=344609 GN=rhlB PE=3 SV=1 Length=421 Score = 153 bits (386), Expect = 3e-39, Method: Composition-based stats. Identities = 77/401 (19%), Positives = 128/401 (32%), Gaps = 58/401 (14%) Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 +P A L A V + + L H ++ N P Sbjct 33 TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAP 92 Query 229 FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR 286 +L ++ E +L +G Y++Q+ L + R+ + Sbjct 93 TRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN 152 Query 287 YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE 337 + +++ + R D L ++D ++ A +RL LF R E Sbjct 153 HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPANQRLNMLFSATLSYRVRE 207 Query 338 LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ 378 LA + E P+ + +I + F SN R IIF T+ Sbjct 208 LAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH 267 Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT 438 + L R LL G + Q+ + ++ +F G L++LVAT Sbjct 268 RCEEIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT 313 Query 439 SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE 497 VA GL IP V Y L + V GR RA S ++ L Sbjct 314 DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP 369 Query 498 ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA 538 A+ET + ++ + A + DL + R Sbjct 370 AIETYIGHSIPVSKYNP----DALMTDLPKPLRLTRPRTGN 406 Score = 43.2 bits (100), Expect = 0.007, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV 77 TG GKT A +L V+ + +++ L Q D Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQ------IHADAEPLA 108 Query 78 TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH 134 +G G + +L ++L L ++ H+ L ++V+DE Sbjct 109 EATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168 Query 135 H 135 Sbjct 169 R 169 >sp|B7NF85|RHLB_ECOLU ATP-dependent RNA helicase RhlB OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) OX=585056 GN=rhlB PE=3 SV=1 Length=421 Score = 153 bits (386), Expect = 3e-39, Method: Composition-based stats. Identities = 77/401 (19%), Positives = 128/401 (32%), Gaps = 58/401 (14%) Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 +P A L A V + + L H ++ N P Sbjct 33 TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAP 92 Query 229 FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR 286 +L ++ E +L +G Y++Q+ L + R+ + Sbjct 93 TRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN 152 Query 287 YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE 337 + +++ + R D L ++D ++ A +RL LF R E Sbjct 153 HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPANQRLNMLFSATLSYRVRE 207 Query 338 LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ 378 LA + E P+ + +I + F SN R IIF T+ Sbjct 208 LAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH 267 Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT 438 + L R LL G + Q+ + ++ +F G L++LVAT Sbjct 268 RCEEIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT 313 Query 439 SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE 497 VA GL IP V Y L + V GR RA S ++ L Sbjct 314 DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP 369 Query 498 ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA 538 A+ET + ++ + A + DL + R Sbjct 370 AIETYIGHSIPVSKYNP----DALMTDLPKPLRLTRPRTGN 406 Score = 43.2 bits (100), Expect = 0.007, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV 77 TG GKT A +L V+ + +++ L Q D Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQ------IHADAEPLA 108 Query 78 TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH 134 +G G + +L ++L L ++ H+ L ++V+DE Sbjct 109 EATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168 Query 135 H 135 Sbjct 169 R 169 >sp|B5YY28|RHLB_ECO5E ATP-dependent RNA helicase RhlB OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) OX=444450 GN=rhlB PE=3 SV=1 Length=421 Score = 153 bits (386), Expect = 3e-39, Method: Composition-based stats. Identities = 72/363 (20%), Positives = 120/363 (33%), Gaps = 58/363 (16%) Query 207 LQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVK 264 L H ++ N P +L ++ E +L +G Y++Q+ Sbjct 71 LLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKV 130 Query 265 LSEAAALAGLQEQRVYALHLRRYN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQ 319 L + R+ + + +++ + R D L ++D + Sbjct 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----R 185 Query 320 ILCAERRLLALFDD----RKNELAHLATHGPEN----PKLEMLEKILQRQFSSSNS---- 367 + A +RL LF R ELA + E P+ + +I + F SN Sbjct 186 MPPANQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMR 245 Query 368 -----------PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT 416 R IIF T+ + L R LL G + Sbjct 246 LLQTLIEEEWPDRAIIFANTKHRCEEIW------GHLAADGHRVGLLTG--------DVA 291 Query 417 QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARAD 475 Q+ + ++ +F G L++LVAT VA GL IP V Y L + V GR RA Sbjct 292 QKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAG 351 Query 476 QSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAA 535 S ++ L A+ET + ++ + A + DL + R Sbjct 352 ASGHSISLACEEYALN----LPAIETYIGHSIPVSKYNP----DALMTDLPKPLRLTRPR 403 Query 536 QAA 538 Sbjct 404 TGN 406 >sp|Q0SYX0|RHLB_SHIF8 ATP-dependent RNA helicase RhlB OS=Shigella flexneri serotype 5b (strain 8401) OX=373384 GN=rhlB PE=3 SV=1 Length=421 Score = 153 bits (385), Expect = 3e-39, Method: Composition-based stats. Identities = 77/401 (19%), Positives = 128/401 (32%), Gaps = 58/401 (14%) Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 +P A L A V + + L H ++ N P Sbjct 33 TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAP 92 Query 229 FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR 286 +L ++ E +L +G Y++Q+ L + R+ + Sbjct 93 TRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN 152 Query 287 YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE 337 + +++ + R D L ++D ++ A +RL LF R E Sbjct 153 HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPANQRLNMLFSATLSYRVRE 207 Query 338 LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ 378 LA + E P+ + +I + F SN R IIF T+ Sbjct 208 LAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH 267 Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT 438 + L R LL G + Q+ + ++ +F G L++LVAT Sbjct 268 RCEEIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT 313 Query 439 SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE 497 VA GL IP V Y L + V GR RA S ++ L Sbjct 314 DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP 369 Query 498 ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA 538 A+E + ++ + A + DL + RA Sbjct 370 AIENYIGHSILVSKYNP----DALMTDLPKPLRLTRARTGN 406 Score = 43.2 bits (100), Expect = 0.007, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV 77 TG GKT A +L V+ + +++ L Q D Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQ------IHADAEPLA 108 Query 78 TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH 134 +G G + +L ++L L ++ H+ L ++V+DE Sbjct 109 EATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168 Query 135 H 135 Sbjct 169 R 169 >sp|B7LU75|RHLB_ESCF3 ATP-dependent RNA helicase RhlB OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 / IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 / CDC 0568-73) OX=585054 GN=rhlB PE=3 SV=1 Length=421 Score = 153 bits (385), Expect = 4e-39, Method: Composition-based stats. Identities = 76/401 (19%), Positives = 128/401 (32%), Gaps = 58/401 (14%) Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 +P A L A V + + L H ++ N P Sbjct 33 TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAP 92 Query 229 FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR 286 +L ++ + +L +G Y++Q+ L + R+ + Sbjct 93 TRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN 152 Query 287 YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE 337 + +++ + R D L ++D ++ A +RL LF R E Sbjct 153 HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPANQRLNMLFSATLSYRVRE 207 Query 338 LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ 378 LA + E P+ + +I + F SN R IIF T+ Sbjct 208 LAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH 267 Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT 438 + L R LL G + Q+ + ++ +F G L++LVAT Sbjct 268 RCEEIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT 313 Query 439 SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE 497 VA GL IP V Y L + V GR RA S ++ L Sbjct 314 DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP 369 Query 498 ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA 538 A+ET + ++ + A + DL + R Sbjct 370 AIETYIGHSIPVSKYNP----DALMTDLPKPLRLTRPRTGN 406 Score = 43.6 bits (101), Expect = 0.005, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV 77 TG GKT A +L V+ + +++ L Q D Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQ------IHADAEPLA 108 Query 78 TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH 134 +G G + +L ++L L ++ H+ L ++V+DE Sbjct 109 QATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168 Query 135 H 135 Sbjct 169 R 169 >sp|Q8XAT4|RHLB_ECO57 ATP-dependent RNA helicase RhlB OS=Escherichia coli O157:H7 OX=83334 GN=rhlB PE=3 SV=3 Length=421 Score = 153 bits (385), Expect = 4e-39, Method: Composition-based stats. Identities = 72/365 (20%), Positives = 121/365 (33%), Gaps = 62/365 (17%) Query 207 LQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVK 264 L H ++ N P +L ++ E +L +G Y++Q+ Sbjct 71 LLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKV 130 Query 265 LSEAAALAGLQEQRVYALHLRRYN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQ 319 L + R+ + + +++ + R D L ++D + Sbjct 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----R 185 Query 320 ILCAERRLLALFDD----RKNELAHLATHGPEN----PKLEMLEKILQRQFSSSNS---- 367 + A +RL LF R ELA + E P+ + +I + F SN Sbjct 186 MPPANQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMR 245 Query 368 -----------PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT 416 R IIF T+ + L R LL G + Sbjct 246 LLQTLIEEEWPDRAIIFANTKHRCEEIW------GHLAADGHRVGLLTG--------DVA 291 Query 417 QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR---GRAR 473 Q+ + ++ +F G L++LVAT VA GL IP V Y L + V GRA Sbjct 292 QKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAG 351 Query 474 ADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKR 533 A+ + E + L A+ET + ++ + A + DL + R Sbjct 352 ANGHSISLACEEYALNLP------AIETYIGHSIPVSKYNP----DALMTDLPKPLRLTR 401 Query 534 AAQAA 538 Sbjct 402 PRTGN 406 >sp|A8G0U0|RHLB_SHESH ATP-dependent RNA helicase RhlB OS=Shewanella sediminis (strain HAW-EB3) OX=425104 GN=rhlB PE=3 SV=1 Length=435 Score = 153 bits (386), Expect = 4e-39, Method: Composition-based stats. Identities = 63/317 (20%), Positives = 113/317 (36%), Gaps = 60/317 (19%) Query 253 FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR-----RYNDALLIHDTVRAVDALAALQ 307 +G + YE Q L + + R+ + A+++ + R D L ++ Sbjct 119 YGGESYEVQRKVLDKGVDILIGTTGRIIDYVRQGIINVSAIQAVVLDEADRMFD-LGFIK 177 Query 308 DFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPE---------------- 347 D ++ A+ RL LF + ELA+ + PE Sbjct 178 DIRFLFR----RMPDAKSRLNMLFSATLSMKVQELAYDHMNEPEKVEIAPNEKTSKNIKE 233 Query 348 ---NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI 404 P ++ ++L + I+F+ T+ S L WL + R LL Sbjct 234 EIFYPSMDEKMRLLLTLLEEDWPDKAIVFSNTKHSCEKLWSWL------EGDGHRVGLLT 287 Query 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 G + Q+ + +++ F +G L++LVAT VA GL I + V Y L + Sbjct 288 G--------DVPQKKRIRILELFTEGKLDVLVATDVAARGLHISDVSHVYNYDLPDDCED 339 Query 465 MVQARGR-ARADQSV--YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK 521 V GR RA + +F E + L A+E + + + + +A Sbjct 340 YVHRIGRTGRAGKKGVSVSFACEEYALNLP------AIEEYINHTIP----VTNYDSEAL 389 Query 522 IRDLQQAALTKRAAQAA 538 + D+ R + Sbjct 390 LDDIPAPVRVHRKHNSR 406 Score = 45.2 bits (105), Expect = 0.002, Method: Composition-based stats. Identities = 20/121 (17%), Positives = 41/121 (34%), Gaps = 17/121 (14%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEE---FRRMLDGR 74 TG GKT A HL ++ + +++ L Q ++ + + Sbjct 55 TGTGKTLAFLVATFNHLLTTPIPEGRQLNQPRAIIMAPTRELAIQIAKDADLLAKHTGLK 114 Query 75 WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECH 134 V + G L + D+LI T + + + + ++ +V+DE Sbjct 115 --VGIVYGGESYEVQRKVLDKGVDILIGTTGRIIDYV----RQGIINVSAIQAVVLDEAD 168 Query 135 H 135 Sbjct 169 R 169 >sp|B7NTG2|RHLB_ECO7I ATP-dependent RNA helicase RhlB OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) OX=585057 GN=rhlB PE=3 SV=1 Length=421 Score = 153 bits (385), Expect = 5e-39, Method: Composition-based stats. Identities = 76/401 (19%), Positives = 128/401 (32%), Gaps = 58/401 (14%) Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 +P A L A V + + L H ++ N P Sbjct 33 TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAP 92 Query 229 FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR 286 +L ++ + +L +G Y++Q+ L + R+ + Sbjct 93 TRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN 152 Query 287 YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE 337 + +++ + R D L ++D ++ A +RL LF R E Sbjct 153 HINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPANQRLNMLFSATLSYRVRE 207 Query 338 LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ 378 LA + E P+ + +I + F SN R IIF T+ Sbjct 208 LAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH 267 Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT 438 + L R LL G + Q+ + ++ +F G L++LVAT Sbjct 268 RCEEIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT 313 Query 439 SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE 497 VA GL IP V Y L + V GR RA S ++ L Sbjct 314 DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP 369 Query 498 ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA 538 A+ET + ++ + A + DL + R Sbjct 370 AIETYIGHSIPVSKYNP----DALMTDLPKPLRLTRPRTGN 406 Score = 43.6 bits (101), Expect = 0.005, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV 77 TG GKT A +L V+ + +++ L Q D Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQ------IHADAEPLA 108 Query 78 TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH 134 +G G + +L ++L L ++ H+ L ++V+DE Sbjct 109 QATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168 Query 135 H 135 Sbjct 169 R 169 >sp|A8ACT3|RHLB_CITK8 ATP-dependent RNA helicase RhlB OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) OX=290338 GN=rhlB PE=3 SV=1 Length=421 Score = 152 bits (384), Expect = 5e-39, Method: Composition-based stats. Identities = 68/363 (19%), Positives = 121/363 (33%), Gaps = 58/363 (16%) Query 207 LQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVK 264 L H ++ N P +L ++ + +L +G Y++Q+ Sbjct 71 LLSHPAIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQTTGLKLGLAYGGDGYDKQLKV 130 Query 265 LSEAAALAGLQEQRVYALHLRRYN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQ 319 L + R+ + + +++ + R D L ++D + Sbjct 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----R 185 Query 320 ILCAERRLLALFDD----RKNELAHLATHGPEN----PKLEMLEKILQRQFSSSNS---- 367 + A +RL LF R ELA + E P+ + +I + F SN Sbjct 186 MPPANQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMR 245 Query 368 -----------PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT 416 R I+F T+ + L R LL G + Sbjct 246 LLQTLIEEEWPDRAIVFANTKHRCEDIW------GHLAADGHRVGLLTG--------DVA 291 Query 417 QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARAD 475 Q+ + ++ +F G L++LVAT VA GL IP V Y L + V GR RA Sbjct 292 QKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAG 351 Query 476 QSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAA 535 S ++ L A+E + ++ + + A + +L + R+ Sbjct 352 ASGHSISLACEEYALN----LPAIEAYIGHSIPVSKYNPE----ALMTNLPKPLRLTRSR 403 Query 536 QAA 538 Sbjct 404 PGN 406 Score = 43.6 bits (101), Expect = 0.005, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 40/121 (33%), Gaps = 17/121 (14%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV 77 TG GKT A + +L V+ + +++ L Q D Sbjct 55 TGTGKTMAFLTSSFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQ------IHADAEPLA 108 Query 78 TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH 134 T +G G + +L ++L L ++ H+ L ++V+DE Sbjct 109 QTTGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168 Query 135 H 135 Sbjct 169 R 169 >sp|B1LLV3|RHLB_ECOSM ATP-dependent RNA helicase RhlB OS=Escherichia coli (strain SMS-3-5 / SECEC) OX=439855 GN=rhlB PE=3 SV=1 Length=421 Score = 152 bits (384), Expect = 5e-39, Method: Composition-based stats. Identities = 76/401 (19%), Positives = 128/401 (32%), Gaps = 58/401 (14%) Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 +P A L A V + + L H ++ N P Sbjct 33 TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAP 92 Query 229 FGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR 286 +L ++ + +L +G Y++Q+ L + R+ + Sbjct 93 TRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN 152 Query 287 YN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNE 337 + +++ + R D L ++D ++ A +RL LF R E Sbjct 153 HINLCAIQVVVLDEADRMYD-LGFIKDIRWLFR----RMPPANQRLNMLFSATLSYRVRE 207 Query 338 LAHLATHGPEN----PKLEMLEKILQRQFSSSNS---------------PRGIIFTRTRQ 378 LA + E P+ + +I + F SN R IIF T+ Sbjct 208 LAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKH 267 Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT 438 + L R LL G + Q+ + ++ +F G L++LVAT Sbjct 268 RCEEIW------GHLAADGHRVGLLTG--------DVAQKKRLRILDEFTRGDLDILVAT 313 Query 439 SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE 497 VA GL IP V Y L + V GR RA S ++ L Sbjct 314 DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN----LP 369 Query 498 ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA 538 A+ET + ++ + A + DL + R Sbjct 370 AIETYIGHSIPVSKYNP----DALMTDLPKPLRLTRPRTGN 406 Score = 42.9 bits (99), Expect = 0.009, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV 77 TG GKT A +L V+ + +++ L Q D Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQ------IHADAEPLA 108 Query 78 TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH 134 +G G + +L ++L L ++ H+ L ++V+DE Sbjct 109 QATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLCAIQVVVLDEAD 168 Query 135 H 135 Sbjct 169 R 169 >sp|B5XYY9|RHLB_KLEP3 ATP-dependent RNA helicase RhlB OS=Klebsiella pneumoniae (strain 342) OX=507522 GN=rhlB PE=3 SV=1 Length=421 Score = 152 bits (384), Expect = 5e-39, Method: Composition-based stats. Identities = 71/361 (20%), Positives = 120/361 (33%), Gaps = 62/361 (17%) Query 207 LQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVK 264 L H +Q N P +L ++ + +L +G Y++Q+ Sbjct 71 LLSHPAIADRQVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKV 130 Query 265 LSEAAALAGLQEQRVYALHLRRYN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQ 319 L + R+ + + +++ + R D L ++D + Sbjct 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----R 185 Query 320 ILCAERRLLALFDD----RKNELAHLATHGPENPKLE-------------------MLEK 356 + A +RL LF R ELA + E ++E + Sbjct 186 MPPATQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMR 245 Query 357 ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT 416 +LQ R IIF T+ + L R LL G + Sbjct 246 LLQTLLEEEWPDRAIIFANTKHRCEDIW------GHLAADGHRVGLLTG--------DVA 291 Query 417 QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR---GRAR 473 Q+ + ++ +F G L++LVAT VA GL IP V Y L + V GRA Sbjct 292 QKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAG 351 Query 474 ADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKR 533 A + + E + L A+ET + ++ + A + DL + R Sbjct 352 ASGNSISLACEEYALNLP------AIETYIGHSIPVSKYNP----DALMTDLPKPLRLTR 401 Query 534 A 534 A Sbjct 402 A 402 Score = 43.6 bits (101), Expect = 0.005, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV 77 TG GKT A +L V+ + +++ L Q D Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIADRQVNQPRALIMAPTRELAVQ------IHADAEPLA 108 Query 78 TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH 134 +G G + +L ++L L ++ H+ L ++V+DE Sbjct 109 QATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168 Query 135 H 135 Sbjct 169 R 169 >sp|A5UI36|RHLB_HAEIG ATP-dependent RNA helicase RhlB OS=Haemophilus influenzae (strain PittGG) OX=374931 GN=rhlB PE=3 SV=1 Length=415 Score = 152 bits (384), Expect = 5e-39, Method: Composition-based stats. Identities = 70/354 (20%), Positives = 125/354 (35%), Gaps = 63/354 (18%) Query 214 PCKQYNLCHRRSQDPFGDLLKKLMD--QIHDHLEMPELSRKFGTQMYEQQVVKLSEAAAL 271 P +Y P +L ++ + + + + +G Y++Q+ + + Sbjct 77 PNLEYPHPRALILAPTRELAVQISNDAEFLAKASGLKTALAYGGDGYDKQLQVIECGVDI 136 Query 272 AGLQEQRVYALHLRRYN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERR 326 RV + +++ + R D L ++D + + + R Sbjct 137 LIGTTGRVIDYVKQGVIGLDEIQVVVLDEADRMFD-LGFIRDIRY----LLRKCPAPQAR 191 Query 327 LLALFDD----RKNELAHLATHGPEN----PKLEMLEKILQRQFSSSNSP---------- 368 L LF + ELA + PE P+ + +I + F SN Sbjct 192 LTMLFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKEELFYPSNQDKMALLLTLME 251 Query 369 -----RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEV 423 R I+F T+ + +L R LL G + Q+ + + Sbjct 252 DEWPERCIVFANTKHRCEEIWGYL------AADGHRVGLLTG--------DVAQKKRLSL 297 Query 424 IQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSV--YA 480 +++F DG L++LVAT VA GL I V Y L + V GR RA +S + Sbjct 298 LKQFTDGDLDILVATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSIS 357 Query 481 FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRA 534 F E + L A+E + ++ Q +A + +L + KRA Sbjct 358 FACEEYAMNLP------AIEEYIGHSIPVSQYETEA-----LLELPKPYRLKRA 400 Score = 41.3 bits (95), Expect = 0.029, Method: Composition-based stats. Identities = 20/120 (17%), Positives = 36/120 (30%), Gaps = 16/120 (13%) Query 26 TGAGKTRAAAYVAKRHLET-------VDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTVT 78 TG GKT A HL T + ++L L Q D + Sbjct 55 TGTGKTMAFLTATFHHLLTHQDPNLEYPHPRALILAPTRELAVQ------ISNDAEFLAK 108 Query 79 TLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECHH 135 G + ++ C ++L + ++ + L ++V+DE Sbjct 109 ASGLKTALAYGGDGYDKQLQVIECGVDILIGTTGRVIDYVKQGVIGLDEIQVVVLDEADR 168 >sp|A6TGG9|RHLB_KLEP7 ATP-dependent RNA helicase RhlB OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) OX=272620 GN=rhlB PE=3 SV=1 Length=421 Score = 152 bits (383), Expect = 7e-39, Method: Composition-based stats. Identities = 70/359 (19%), Positives = 120/359 (33%), Gaps = 58/359 (16%) Query 207 LQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQVVK 264 L H +Q N P +L ++ + +L +G Y++Q+ Sbjct 71 LLSHPAIADRQVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKV 130 Query 265 LSEAAALAGLQEQRVYALHLRRYN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQ 319 L + R+ + + +++ + R D L ++D + Sbjct 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYD-LGFIKDIRWLFR----R 185 Query 320 ILCAERRLLALFDD----RKNELAHLATHGPENPKLE-------------------MLEK 356 + A +RL LF R ELA + E ++E + Sbjct 186 MPPATQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMR 245 Query 357 ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT 416 +LQ R I+F T+ + L R LL G + Sbjct 246 LLQTLLEEEWPDRAIVFANTKHRCEDIW------GHLAADGHRVGLLTG--------DVA 291 Query 417 QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARAD 475 Q+ + ++++F G L++LVAT VA GL IP V Y L + V GR RA Sbjct 292 QKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAG 351 Query 476 QSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRA 534 S ++ L A+ET + ++ + A + DL + RA Sbjct 352 ASGHSISLACEEYALN----LPAIETYIGHSIPVSKYNP----DALMTDLPKPLRLTRA 402 Score = 43.6 bits (101), Expect = 0.005, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV 77 TG GKT A +L V+ + +++ L Q D Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIADRQVNQPRALIMAPTRELAVQ------IHADAEPLA 108 Query 78 TTLSGDMGPRAGFGHLARCHDLLICTAELLQMA---LTSPEEEEHVELTVFSLIVVDECH 134 +G G + +L ++L L ++ H+ L ++V+DE Sbjct 109 QATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168 Query 135 H 135 Sbjct 169 R 169 >sp|A5UDI1|RHLB_HAEIE ATP-dependent RNA helicase RhlB OS=Haemophilus influenzae (strain PittEE) OX=374930 GN=rhlB PE=3 SV=1 Length=415 Score = 151 bits (381), Expect = 1e-38, Method: Composition-based stats. Identities = 66/319 (21%), Positives = 115/319 (36%), Gaps = 61/319 (19%) Query 247 PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN-----DALLIHDTVRAVD 301 + + +G Y++Q+ + + RV + +++ + R D Sbjct 112 LKTALAYGGDGYDKQLQAIERGVDILIGTTGRVIDYVKQGVIGLDEIQVVVLDEADRMFD 171 Query 302 ALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPEN----PKLEM 353 L ++D + + + RL LF + ELA + PE P+ + Sbjct 172 -LGFIRDIRY----LLRKCPTPQVRLTMLFSATLSYKVRELAFEDMNDPEYIEIEPEQKT 226 Query 354 LEKILQRQFSSSNSP---------------RGIIFTRTRQSAHSLLLWLQQQQGLQTVDI 398 +I + F SN R I+F T+ + +L Sbjct 227 GHRIKEELFYPSNQDKMALLLTLMEDEWPERCIVFANTKHRCEEIWGYL------AADGH 280 Query 399 RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL 458 R LL G + Q+ + ++++F DG L++LVAT VA GL I V Y L Sbjct 281 RVGLLTG--------DVAQKKRLSLLKQFTDGDLDILVATDVAARGLHISDVTHVFNYDL 332 Query 459 LTNEISMVQARGR-ARADQSV--YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQ 515 + V GR RA +S +F E + L A+E + ++ Q + Sbjct 333 PDDREDYVHRIGRTGRAGESGVSISFACEEYAMNLP------AIEEYIGHSIPVSQYETE 386 Query 516 AEYQAKIRDLQQAALTKRA 534 A + +L + KRA Sbjct 387 A-----LLELPKPYRLKRA 400 Score = 38.6 bits (88), Expect = 0.20, Method: Composition-based stats. Identities = 27/119 (23%), Positives = 43/119 (36%), Gaps = 14/119 (12%) Query 26 TGAGKTRAAAYVAKRHLET-------VDGAKVVVLVNRVHLVTQ--HGEEFRRMLDGRWT 76 TG GKT A HL T + ++L + L Q + EF G T Sbjct 55 TGTGKTMAFLTATFHHLLTHQDPNLEYPHPRALILASTRELAVQISNDAEFLAKACGLKT 114 Query 77 VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH 135 GD + + R D+LI T + + ++ + L ++V+DE Sbjct 115 ALAYGGDGYDKQL-QAIERGVDILIGTTGRVIDYV----KQGVIGLDEIQVVVLDEADR 168 >sp|A7TKR8|DED1_VANPO ATP-dependent RNA helicase DED1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 GN=DED1 PE=3 SV=1 Length=650 Score = 154 bits (390), Expect = 2e-38, Method: Composition-based stats. Identities = 76/356 (21%), Positives = 127/356 (36%), Gaps = 57/356 (16%) Query 228 PFGDLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR 285 P +L ++ D+ + +G Q+ LS L R+ L R Sbjct 251 PTRELATQIYDEAKKFTYRSWVRPTVVYGGSDIGSQIRDLSRGCDLLVATPGRLSDLLER 310 Query 286 -----RYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH 340 L++ + R +D + + ER+ L +++ H Sbjct 311 GRVSLANVKYLVLDEADRMLDM--GFEPQIRQIVDGCDMPPVGERQTLMFSATFPDDIQH 368 Query 341 LATH---------------GPENPKLEML-------EKILQRQFSSSNSPRGIIFTRTRQ 378 LA EN +L + L S+SN +IF T++ Sbjct 369 LARDFLSDYIFLSVGKVGSTSENITQRILYVEDMDKKSTLLDLLSASNDGLTLIFVETKR 428 Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT 438 A L +L Q D RA + G TQ +++ + F++G NLLVAT Sbjct 429 MADELTDFLIMQ------DFRATAIHG--------DRTQSERERALAAFKNGNANLLVAT 474 Query 439 SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKR---E 493 +VA GLDIP+ VV Y L ++ V GR RA + A G+R + + E Sbjct 475 AVAARGLDIPNVTHVVNYDLPSDIDDYVHRIGRTGRAGNTGVATAFFNRGNRNIVKGMYE 534 Query 494 LINEALETL-------MEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQREN 542 L+ EA + + M ++ + + RD +++ + R N Sbjct 535 LLAEANQEIPPFLNDVMRESGRGGRTSGFSSRNNSNRDYRRSGSNNGGSWGNSRSN 590 Score = 49.0 bits (115), Expect = 1e-04, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 47/138 (34%), Gaps = 23/138 (17%) Query 16 EGKNIIIWLPTGAGKT--RAAAYVAKRHLETVDG-----------AK----VVVLVNRVH 58 G++++ TG+GKT V + K +VL Sbjct 196 RGRDLMACAQTGSGKTGGFL-FPVLSESFKNGPSPMPESARKSFVKKAYPTALVLAPTRE 254 Query 59 LVTQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE 117 L TQ +E ++ W T + G + L+R DLL+ T L L E Sbjct 255 LATQIYDEAKKFTYRSWVRPTVVYGGSDIGSQIRDLSRGCDLLVATPGRLSDLL----ER 310 Query 118 EHVELTVFSLIVVDECHH 135 V L +V+DE Sbjct 311 GRVSLANVKYLVLDEADR 328 >sp|Q12S35|RHLB_SHEDO ATP-dependent RNA helicase RhlB OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) OX=318161 GN=rhlB PE=3 SV=1 Length=432 Score = 151 bits (380), Expect = 2e-38, Method: Composition-based stats. Identities = 64/316 (20%), Positives = 115/316 (36%), Gaps = 56/316 (18%) Query 253 FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR-----RYNDALLIHDTVRAVDALAALQ 307 +G + YE Q L + + R+ + A+++ + R D L ++ Sbjct 119 YGGESYEVQREVLDKGVDILIGTTGRIIDYVRQGVISLNSIQAVVLDEADRMFD-LGFIK 177 Query 308 DFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPE----NPKLEMLEKILQ 359 D ++ A RL LF + ELA+ + PE P+ + + I + Sbjct 178 DIRFLFR----RMPDASSRLNMLFSATLSMKVQELAYDHMNDPEKVEVTPEEKTSKNIKE 233 Query 360 RQFSSSNSPR---------------GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI 404 F S + I+F+ T+ S +L WL + R LL Sbjct 234 EIFYPSTEDKMRLLLTLMEEDWPEKAIVFSNTKHSCENLWSWL------EGDGHRVGLLT 287 Query 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 G + Q+ + ++++F G L++LVAT VA GL I + V Y L + Sbjct 288 G--------DVPQKKRIRILEQFTSGDLDVLVATDVAARGLHISDVSHVYNYDLPDDCED 339 Query 465 MVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIR 523 V GR RA + + L A+E + +V + + + +A + Sbjct 340 YVHRIGRTGRAGNKGVSVSFACETYALN----LPAIEQYIGHSVP----VSRYDREALLD 391 Query 524 DLQQAALTKRAAQAAQ 539 D+ R ++ Sbjct 392 DIPTPVKIHRKHPTSR 407 Score = 46.7 bits (109), Expect = 5e-04, Method: Composition-based stats. Identities = 35/225 (16%), Positives = 67/225 (30%), Gaps = 23/225 (10%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQ---H 63 L+ K+I TG GKT A HL ++ + +++ L Q Sbjct 44 LKAKDIAGQAQTGTGKTMAFLVATFNHLLTTPAPQARELNQPRAIIMAPTRELAIQIAKD 103 Query 64 GEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELT 123 + + V + G L + D+LI T + + + + L Sbjct 104 ANLLAKHTGLK--VGIVYGGESYEVQREVLDKGVDILIGTTGRIIDYV----RQGVISLN 157 Query 124 VFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAIN 183 +V+DE D + + + L + T S + A + Sbjct 158 SIQAVVLDEADR-MFDLGFIKDIRFLFRRMPDASSRLNMLFSATLS-----MKVQELAYD 211 Query 184 HVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 H+ T + +N ++ S + + L P Sbjct 212 HMNDPEKVEVTPEEKTSKNIKEEIFYPSTEDKMRLLLTLMEEDWP 256 >sp|Q4I7K4|DED1_GIBZE ATP-dependent RNA helicase DED1 OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=DED1 PE=3 SV=1 Length=675 Score = 153 bits (386), Expect = 8e-38, Method: Composition-based stats. Identities = 67/308 (22%), Positives = 113/308 (37%), Gaps = 47/308 (15%) Query 228 PFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR 285 P +L+ ++ D+ + +G Q+ ++ L R+ L R Sbjct 279 PTRELVSQIFDESRKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIER 338 Query 286 -----RYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH 340 + L++ + R +D + R + +R+ L ++ Sbjct 339 GRISLQNIKYLVLDEADRMLDM--GFEPQIRRIVEGEDMPQVQDRQTLMFSATFPRDIQM 396 Query 341 LA-----------------THGPENPKLEMLEKI-----LQRQFSSSNSPRGIIFTRTRQ 378 LA T K+E +E + L S + +IF T++ Sbjct 397 LARDFLKDYIFLSVGRVGSTSENITQKVEYVEDVDKRSVLLDILHSHANGLTLIFVETKR 456 Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT 438 A SL +L Q T S TQR+++ ++ F++G +LVAT Sbjct 457 MADSLSDFLINQNFPAT--------------SIHGDRTQRERERALEFFRNGRCPILVAT 502 Query 439 SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELIN 496 +VA GLDIPH V+ Y L T+ V GR RA + A G+R + REL++ Sbjct 503 AVAARGLDIPHVTHVINYDLPTDVDDYVHRIGRTGRAGNTGIATAFFNRGNRGIVRELMD 562 Query 497 EALETLME 504 E E Sbjct 563 LLKEANQE 570 Score = 50.2 bits (118), Expect = 5e-05, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 48/138 (35%), Gaps = 23/138 (17%) Query 17 GKNIIIWLPTGAGKT-----------RA---AAYVAKRHLETVDGAKV----VVLVNRVH 58 G++++ TG+GKT +A A + K ++L Sbjct 223 GRDLMACAQTGSGKTGGFLFPILSQAFINGPSAVPANAAGQFGRQRKAYPTSLILAPTRE 282 Query 59 LVTQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE 117 LV+Q +E R+ W + G + + R DLL+ T L + E Sbjct 283 LVSQIFDESRKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLI----ER 338 Query 118 EHVELTVFSLIVVDECHH 135 + L +V+DE Sbjct 339 GRISLQNIKYLVLDEADR 356 >sp|A1SAL1|RHLB_SHEAM ATP-dependent RNA helicase RhlB OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) OX=326297 GN=rhlB PE=3 SV=1 Length=439 Score = 149 bits (375), Expect = 1e-37, Method: Composition-based stats. Identities = 63/329 (19%), Positives = 114/329 (35%), Gaps = 61/329 (19%) Query 253 FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN-----DALLIHDTVRAVDALAALQ 307 +G + YE Q L + + R+ + A+++ + R D L ++ Sbjct 119 YGGEGYEAQRKVLDKGVDVLIGTTGRIIDYVRQGVINLGAIQAVVLDEADRMFD-LGFIK 177 Query 308 DFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPE---------------- 347 D + ++ A+ RL LF + ELA+ + P Sbjct 178 DIRFLFN----RMPGAKERLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSRNIKE 233 Query 348 ---NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI 404 P +E K+L + I+F T+ +L L+ R LL Sbjct 234 EIFYPSMEDKLKLLHSLIEEDWPEKAIVFANTKYQCENLW------ASLEADGHRVGLLT 287 Query 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 G + Q+ + +++++F L++LVAT VA GL I + V Y L + Sbjct 288 G--------DVPQKKRLKILEQFTQSELDILVATDVAARGLHISDVSHVYNYDLPDDCED 339 Query 465 MVQARGR-ARADQSV--YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK 521 V GR RA Q +F E + L A+E ++ ++ + + Sbjct 340 YVHRIGRTGRAGQKGVSVSFACEEYALNLP------AIEDYIKHSIPVT-----SYDRDA 388 Query 522 IRDLQQAALTKRAAQAAQRENQRQQFPVE 550 + D+ R A R + + Sbjct 389 LIDIPPPVKIHRKPHAGGRNLRDRNGSPR 417 Score = 45.6 bits (106), Expect = 0.001, Method: Composition-based stats. Identities = 24/121 (20%), Positives = 42/121 (35%), Gaps = 17/121 (14%) Query 26 TGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGEE---FRRMLDGR 74 TG GKT A HL ++ + +V+ L Q ++ + + Sbjct 55 TGTGKTLAFLVATFNHLLTTPVPEHRQLNQPRAIVMAPTRELAIQIAKDATLLSKHSGLK 114 Query 75 WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECH 134 V + G G A L + D+LI T + + + + L +V+DE Sbjct 115 --VGIVYGGEGYEAQRKVLDKGVDVLIGTTGRIIDYV----RQGVINLGAIQAVVLDEAD 168 Query 135 H 135 Sbjct 169 R 169 >sp|A7EJY3|DED1_SCLS1 ATP-dependent RNA helicase ded1 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 GN=ded1 PE=3 SV=1 Length=678 Score = 152 bits (384), Expect = 2e-37, Method: Composition-based stats. Identities = 66/309 (21%), Positives = 111/309 (36%), Gaps = 49/309 (16%) Query 228 PFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR 285 P +L+ ++ D+ + +G Q+ ++ L R+ L R Sbjct 279 PTRELVSQIFDESRKFAYRSWVRPCVVYGGADIGSQLRQMERGCDLLVATPGRLVDLIER 338 Query 286 -----RYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH 340 + L++ + R +D Q R V + + R +F Sbjct 339 GRISLQNIKYLVLDEADRMLDMGFEPQ---IRRIVEGEDMPGVQNRQTLMFSATFPRDIQ 395 Query 341 L------------------ATHGPENPKLEMLEKI-----LQRQFSSSNSPRGIIFTRTR 377 + +T K+E +E I L + + +IF T+ Sbjct 396 MLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDIDKRSVLLDILHTHGAGLTLIFVETK 455 Query 378 QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA 437 + A SL +L Q T S TQR+++ ++ F++G +LVA Sbjct 456 RMADSLSDFLINQNFPAT--------------SIHGDRTQRERERALEMFRNGRCPILVA 501 Query 438 TSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELI 495 T+VA GLDIP+ VV Y L T+ V GR RA + + G+R + R+LI Sbjct 502 TAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGISTAFFNRGNRGVVRDLI 561 Query 496 NEALETLME 504 E E Sbjct 562 ELLKEANQE 570 Score = 48.3 bits (113), Expect = 2e-04, Method: Composition-based stats. Identities = 25/140 (18%), Positives = 47/140 (34%), Gaps = 23/140 (16%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKV------------------VVLVNR 56 + G++++ TG+GKT + + + ++L Sbjct 221 MGGRDLMACAQTGSGKTGGFLFPILSQAFQTGPSPIPANAAGSFGRTRKAYPTSLILAPT 280 Query 57 VHLVTQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE 115 LV+Q +E R+ W + G + + R DLL+ T L + Sbjct 281 RELVSQIFDESRKFAYRSWVRPCVVYGGADIGSQLRQMERGCDLLVATPGRLVDLI---- 336 Query 116 EEEHVELTVFSLIVVDECHH 135 E + L +V+DE Sbjct 337 ERGRISLQNIKYLVLDEADR 356 >sp|A1CXK7|DED1_NEOFI ATP-dependent RNA helicase ded1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=ded1 PE=3 SV=1 Length=676 Score = 152 bits (384), Expect = 2e-37, Method: Composition-based stats. Identities = 66/309 (21%), Positives = 112/309 (36%), Gaps = 48/309 (16%) Query 228 PFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR 285 P +L+ ++ D+ + +G Q+ ++ L R+ L R Sbjct 285 PTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIER 344 Query 286 R-----YNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH 340 L++ + R +D + R + ER+ L ++ Sbjct 345 GRISLVNIKYLVLDEADRMLDM--GFEPQIRRIVEGEDMPNVNERQTLMFSATFPRDIQM 402 Query 341 LA-----------------THGPENPKLEMLEK------ILQRQFSSSNSPRGIIFTRTR 377 LA T K+E +E +L + S +IF T+ Sbjct 403 LARDFLKDYVFLSVGRVGSTSENITQKVEYVEDHDKRSVLLDILHTHGTSGLTLIFVETK 462 Query 378 QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA 437 + A +L +L Q+ T + TQR+++ ++ F+ G +LVA Sbjct 463 RMADALSDFLLNQRFPAT--------------AIHGDRTQRERERALEMFRSGRCPILVA 508 Query 438 TSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELI 495 T+VA GLDIP+ V+ Y L T+ V GR RA + A G+R + RELI Sbjct 509 TAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVRELI 568 Query 496 NEALETLME 504 + E E Sbjct 569 DLLKEAHQE 577 Score = 47.5 bits (111), Expect = 4e-04, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 47/142 (33%), Gaps = 25/142 (18%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKV--------------------VVLV 54 + G++++ TG+GKT + + V ++L Sbjct 225 MNGRDLMACAQTGSGKTGGFLFPILSQAFQTGPSAVPAQASGQFGYGRQRKAYPTSLILA 284 Query 55 NRVHLVTQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTS 113 LV+Q +E R+ W + G + + R DLL+ T L + Sbjct 285 PTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLI-- 342 Query 114 PEEEEHVELTVFSLIVVDECHH 135 E + L +V+DE Sbjct 343 --ERGRISLVNIKYLVLDEADR 362 >sp|Q6CLR3|DED1_KLULA ATP-dependent RNA helicase DED1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=DED1 PE=3 SV=1 Length=627 Score = 151 bits (381), Expect = 2e-37, Method: Composition-based stats. Identities = 63/308 (20%), Positives = 113/308 (37%), Gaps = 47/308 (15%) Query 228 PFGDLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR 285 P +L ++ D+ + +G + Q+ ++ L R+ L R Sbjct 250 PTRELATQIYDEAKKFTYRSWVKPMVVYGGASIDNQIKQMRYGCNLLVATPGRLTDLLER 309 Query 286 RY-----NDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH 340 RY L++ + R +D + R R+ L +E+ H Sbjct 310 RYISLANVKYLVLDEADRMLDM--GFEPQIRRIVEGSDMPSVDNRQTLMFSATFPSEIQH 367 Query 341 LA-----------------THGPENPKLEMLEKI-----LQRQFSSSNSPRGIIFTRTRQ 378 LA T K+ +E L ++SN +IF T++ Sbjct 368 LASDFLKDYVFLSVGRVGSTSENITQKILYVEDFDKNDTLLDLLAASNEGLTLIFVETKR 427 Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT 438 +A SL +L ++ G ++ TQ +++ + F+ G +LVAT Sbjct 428 AADSLTDFL--------------IMEGFKATAIHGDRTQGERERALSAFKTGRATILVAT 473 Query 439 SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYA-FVATEGSRELKRELIN 496 +VA GLDIP+ V+ + L + V GR RA + A G++ + +EL++ Sbjct 474 AVAARGLDIPNVTHVINFDLPNDIDDYVHRIGRTGRAGNTGVATTFFNRGNKNVAKELVS 533 Query 497 EALETLME 504 E E Sbjct 534 LLSEANQE 541 Score = 46.7 bits (109), Expect = 6e-04, Method: Composition-based stats. Identities = 27/151 (18%), Positives = 51/151 (34%), Gaps = 24/151 (16%) Query 2 ELRSYQWEVIMPALEGKNIIIWLPTGAGKT--RAAAYVAKRHLE----------TVDGAK 49 ++ Y ++ G++++ TG+GKT +++ K Sbjct 184 PVQKYSVPIVAA---GRDLMACAQTGSGKTGGFLFPVLSESFSSGPASTPEAAGNSYIKK 240 Query 50 V----VVLVNRVHLVTQHGEEFRRMLDGRWTVTT-LSGDMGPRAGFGHLARCHDLLICTA 104 V V+L L TQ +E ++ W + G + +LL+ T Sbjct 241 VYPTAVILAPTRELATQIYDEAKKFTYRSWVKPMVVYGGASIDNQIKQMRYGCNLLVATP 300 Query 105 ELLQMALTSPEEEEHVELTVFSLIVVDECHH 135 L L E ++ L +V+DE Sbjct 301 GRLTDLL----ERRYISLANVKYLVLDEADR 327 >sp|Q2HBE7|DED1_CHAGB ATP-dependent RNA helicase DED1 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=DED1 PE=3 SV=1 Length=688 Score = 151 bits (382), Expect = 3e-37, Method: Composition-based stats. Identities = 63/281 (22%), Positives = 102/281 (36%), Gaps = 45/281 (16%) Query 253 FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR-----RYNDALLIHDTVRAVDALAALQ 307 +G Q+ ++ L R+ L R L++ + R +D + Sbjct 317 YGGADIGSQLRQMERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDM--GFE 374 Query 308 DFYHREHVTKTQILCAERRLLAL---FDDRKNELAHL--------------ATHGPENPK 350 R + +R+ L F LA +T K Sbjct 375 PQIRRIVQGEDMPTTGQRQTLMFSATFPRDIQMLAQDFLNDYVFLSVGRVGSTSENITQK 434 Query 351 LEMLEKI-----LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 +E +E + L + +IF T++ A SL +L Q T Sbjct 435 VEYVEDVDKRSVLLDILHTHAGGLTLIFVETKRMADSLSDFLINQNFPAT---------- 484 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465 S TQR+++ ++ F++G +LVAT+VA GLDIP+ V+ Y L T+ Sbjct 485 ----SIHGDRTQRERERALELFRNGKCPILVATAVAARGLDIPNVTHVINYDLPTDVDDY 540 Query 466 VQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLME 504 V GR RA + A G+R + REL++ E E Sbjct 541 VHRIGRTGRAGNTGIATAFFNRGNRGIVRELLDLLKEANQE 581 Score = 51.0 bits (120), Expect = 4e-05, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 54/159 (34%), Gaps = 28/159 (18%) Query 1 MELRSYQW------EVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKV---- 50 +EL YQ I + G++++ TG+GKT + T + + Sbjct 213 IELARYQIPTPVQKYSIPIVINGRDLMACAQTGSGKTGGFLFPIMHQSFTQGPSPIPAQS 272 Query 51 -------------VVLVNRVHLVTQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARC 96 ++L LV+Q EE R+ W + G + + R Sbjct 273 GGGYRQRKAYPTALILAPTRELVSQIYEEARKFAYRSWVRPCVVYGGADIGSQLRQMERG 332 Query 97 HDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH 135 DLL+ T L + E + L +V+DE Sbjct 333 CDLLVATPGRLVDLI----ERGRISLCNIKYLVLDEADR 367 >sp|Q0UWA6|DED1_PHANO ATP-dependent RNA helicase DED1 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) OX=321614 GN=DED1 PE=3 SV=1 Length=696 Score = 151 bits (382), Expect = 3e-37, Method: Composition-based stats. Identities = 67/308 (22%), Positives = 113/308 (37%), Gaps = 47/308 (15%) Query 228 PFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR 285 P +L+ ++ D+ + +G Q+ ++ L R+ L R Sbjct 294 PTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIER 353 Query 286 -----RYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCA-----------ERRLLA 329 L++ + R +D + R + A R + Sbjct 354 GRISLASIKYLVLDEADRMLDM--GFEPQIRRIVEGEDMPPTAGRQTLMFSATFPRDIQM 411 Query 330 LFDDRKNELAHLA------THGPENPKLEMLEK-----ILQRQFSSSNSPRGIIFTRTRQ 378 L D E L+ T K+E +E +L + + +IF T++ Sbjct 412 LARDFLKEYIFLSVGRVGSTSENITQKIEYVEDADKRSVLLDILHTHGAGLSLIFVETKR 471 Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT 438 A SL +L Q G +S TQR++++ ++ F+ G +LVAT Sbjct 472 MADSLSDFLINQ--------------GFPATSIHGDRTQREREKALEMFRSGRCPILVAT 517 Query 439 SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELIN 496 +VA GLDIP+ VV Y L T+ V GR RA + A G+R + R+L++ Sbjct 518 AVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVRDLLD 577 Query 497 EALETLME 504 E E Sbjct 578 LLKEANQE 585 Score = 48.6 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 27/140 (19%), Positives = 48/140 (34%), Gaps = 23/140 (16%) Query 15 LEGKNIIIWLPTGAGKT-----RAAAYVAKRHLETVDGAKV-------------VVLVNR 56 + G++++ TG+GKT A + A+ ++L Sbjct 236 MGGRDLMACAQTGSGKTGGFLFPILAQAFQNGPSPPPTAQAGGYGRQRKAYPTSLILAPT 295 Query 57 VHLVTQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE 115 LV+Q +E R+ W + G + + R DLL+ T L + Sbjct 296 RELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLI---- 351 Query 116 EEEHVELTVFSLIVVDECHH 135 E + L +V+DE Sbjct 352 ERGRISLASIKYLVLDEADR 371 >sp|Q9P6U9|DED1_NEUCR ATP-dependent RNA helicase ded1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=drh-9 PE=3 SV=1 Length=688 Score = 151 bits (380), Expect = 5e-37, Method: Composition-based stats. Identities = 66/308 (21%), Positives = 110/308 (36%), Gaps = 47/308 (15%) Query 228 PFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR 285 P +L+ ++ D+ + +G Q+ ++ L R+ L R Sbjct 287 PTRELVSQIYDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIER 346 Query 286 -----RYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH 340 L++ + R +D + R + +R+ L ++ Sbjct 347 GRISLCNIKYLVLDEADRMLDM--GFEPQIRRIVEGEDMPKVNDRQTLMFSATFPRDIQI 404 Query 341 LA-----------------THGPENPKLEMLEKI-----LQRQFSSSNSPRGIIFTRTRQ 378 LA T K+E +E I L + +IF T++ Sbjct 405 LARDFLKDYIFLSVGRVGSTSENITQKVEYVEDIDKRSVLLDILHTHAGGLTLIFVETKR 464 Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT 438 A SL +L Q T S TQR+++ ++ F++G +LVAT Sbjct 465 MADSLSDFLINQNFPAT--------------SIHGDRTQRERERALEMFRNGRCPILVAT 510 Query 439 SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELIN 496 +VA GLDIP+ V+ Y L T+ V GR RA + A G+R + REL+ Sbjct 511 AVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVRELLE 570 Query 497 EALETLME 504 E E Sbjct 571 LLKEANQE 578 Score = 47.9 bits (112), Expect = 3e-04, Method: Composition-based stats. Identities = 27/140 (19%), Positives = 47/140 (34%), Gaps = 23/140 (16%) Query 15 LEGKNIIIWLPTGAGKT-----------------RAAAYVAKRHLETVDG-AKVVVLVNR 56 + G++++ TG+GKT A A + ++L Sbjct 229 MGGRDLMACAQTGSGKTGGFLFPILSQSFHTGPSPIPASAAGAYGRQRKAYPTALILAPT 288 Query 57 VHLVTQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE 115 LV+Q +E R+ W + G + + R DLL+ T L + Sbjct 289 RELVSQIYDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLI---- 344 Query 116 EEEHVELTVFSLIVVDECHH 135 E + L +V+DE Sbjct 345 ERGRISLCNIKYLVLDEADR 364 >sp|Q4WP13|DED1_ASPFU ATP-dependent RNA helicase ded1 OS=Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293) OX=330879 GN=ded1 PE=3 SV=1 Length=674 Score = 151 bits (380), Expect = 5e-37, Method: Composition-based stats. Identities = 65/309 (21%), Positives = 111/309 (36%), Gaps = 48/309 (16%) Query 228 PFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR 285 P +L+ ++ D+ + +G Q+ ++ L R+ L R Sbjct 283 PTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIER 342 Query 286 R-----YNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH 340 L++ + R +D + R + ER+ L ++ Sbjct 343 GRISLVNIKYLVLDEADRMLDM--GFEPQIRRIVEGEDMPNVNERQTLMFSATFPRDIQM 400 Query 341 LA-----------------THGPENPKLEMLEK------ILQRQFSSSNSPRGIIFTRTR 377 LA T K+E +E +L + S +IF T+ Sbjct 401 LARDFLKDYVFLSVGRVGSTSENITQKVEYVEDHDKRSVLLDILHTHGTSGLTLIFVETK 460 Query 378 QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA 437 + A +L +L Q+ T + TQR+++ ++ F+ G +LVA Sbjct 461 RMADALSDFLLNQRFPAT--------------AIHGDRTQRERERALEMFRSGRCPILVA 506 Query 438 TSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELI 495 T+VA GLDIP+ V+ Y L T+ V GR RA + A +R + RELI Sbjct 507 TAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRSNRGVVRELI 566 Query 496 NEALETLME 504 + E E Sbjct 567 DLLKEAHQE 575 Score = 47.5 bits (111), Expect = 4e-04, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 47/142 (33%), Gaps = 25/142 (18%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKV--------------------VVLV 54 + G++++ TG+GKT + + V ++L Sbjct 223 MNGRDLMACAQTGSGKTGGFLFPILSQAFQTGPSPVPAQASGQFGYGRQRKAYPTSLILA 282 Query 55 NRVHLVTQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTS 113 LV+Q +E R+ W + G + + R DLL+ T L + Sbjct 283 PTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLI-- 340 Query 114 PEEEEHVELTVFSLIVVDECHH 135 E + L +V+DE Sbjct 341 --ERGRISLVNIKYLVLDEADR 360 >sp|Q2UGK3|DED1_ASPOR ATP-dependent RNA helicase ded1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=ded1 PE=3 SV=1 Length=675 Score = 151 bits (380), Expect = 5e-37, Method: Composition-based stats. Identities = 65/309 (21%), Positives = 112/309 (36%), Gaps = 48/309 (16%) Query 228 PFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR 285 P +L+ ++ D+ + +G Q+ ++ L R+ L R Sbjct 281 PTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIER 340 Query 286 R-----YNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH 340 L++ + R +D + R + +R+ L ++ Sbjct 341 GRISLVNIKYLILDEADRMLDM--GFEPQIRRIVEGEDMPHVNDRQTLMFSATFPRDIQM 398 Query 341 LA-----------------THGPENPKLEMLEK------ILQRQFSSSNSPRGIIFTRTR 377 LA T K+E +E +L + S +IF T+ Sbjct 399 LARDFLKDYVFLSVGRVGSTSENITQKVEYVEDHDKRSVLLDILHTHGTSGLTLIFVETK 458 Query 378 QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA 437 + A SL +L Q+ T + TQR+++ ++ F+ G +LVA Sbjct 459 RMADSLSDFLLNQRFPAT--------------AIHGDRTQRERERALEMFRSGRCPILVA 504 Query 438 TSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELI 495 T+VA GLDIP+ V+ Y L T+ V GR RA + A G+R + R+LI Sbjct 505 TAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVRDLI 564 Query 496 NEALETLME 504 + E E Sbjct 565 DLLKEAHQE 573 Score = 48.6 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 25/142 (18%), Positives = 48/142 (34%), Gaps = 25/142 (18%) Query 15 LEGKNIIIWLPTGAGKT--RAAAYVAKRH--------------LETVDGAKV----VVLV 54 + G++++ TG+GKT +++ K ++L Sbjct 221 MNGRDLMACAQTGSGKTGGFLFPILSQAFQNGPSPTPAPASGQFSYGRQRKAYPTSLILA 280 Query 55 NRVHLVTQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTS 113 LV+Q +E R+ W + G + + R DLL+ T L + Sbjct 281 PTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLI-- 338 Query 114 PEEEEHVELTVFSLIVVDECHH 135 E + L +++DE Sbjct 339 --ERGRISLVNIKYLILDEADR 358 >sp|A2QI25|DED1_ASPNC ATP-dependent RNA helicase ded1 OS=Aspergillus niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) OX=425011 GN=ded1 PE=3 SV=1 Length=678 Score = 151 bits (380), Expect = 5e-37, Method: Composition-based stats. Identities = 65/309 (21%), Positives = 112/309 (36%), Gaps = 48/309 (16%) Query 228 PFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR 285 P +L+ ++ D+ + +G Q+ ++ L R+ L R Sbjct 282 PTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIER 341 Query 286 R-----YNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH 340 L++ + R +D + R + +R+ L ++ Sbjct 342 GRISLVNIKYLILDEADRMLDM--GFEPQIRRIVEGEDMPHVNDRQTLMFSATFPRDIQM 399 Query 341 LA-----------------THGPENPKLEMLEK------ILQRQFSSSNSPRGIIFTRTR 377 LA T K+E +E +L + S +IF T+ Sbjct 400 LARDFLKDYVFLSVGRVGSTSENITQKVEYVEDHDKRSVLLDILHTHGTSGLTLIFVETK 459 Query 378 QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA 437 + A SL +L Q+ T + TQR+++ ++ F+ G +LVA Sbjct 460 RMADSLSDFLLNQRFPAT--------------AIHGDRTQRERERALEMFRSGRCPILVA 505 Query 438 TSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELI 495 T+VA GLDIP+ V+ Y L T+ V GR RA + A G+R + R+LI Sbjct 506 TAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVRDLI 565 Query 496 NEALETLME 504 + E E Sbjct 566 DLLKEAHQE 574 Score = 47.9 bits (112), Expect = 3e-04, Method: Composition-based stats. Identities = 25/142 (18%), Positives = 49/142 (35%), Gaps = 25/142 (18%) Query 15 LEGKNIIIWLPTGAGKT--RAAAYVAKRH--------------LETVDGAKV----VVLV 54 + G++++ TG+GKT +++ + K ++L Sbjct 222 MNGRDLMACAQTGSGKTGGFLFPILSQAYQNGPSAAPAQAGGQFGYGRQRKAYPTSLILA 281 Query 55 NRVHLVTQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTS 113 LV+Q +E R+ W + G + + R DLL+ T L + Sbjct 282 PTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLI-- 339 Query 114 PEEEEHVELTVFSLIVVDECHH 135 E + L +++DE Sbjct 340 --ERGRISLVNIKYLILDEADR 359 >sp|A6SEH9|DED1_BOTFB ATP-dependent RNA helicase ded1 OS=Botryotinia fuckeliana (strain B05.10) OX=332648 GN=ded1 PE=3 SV=1 Length=683 Score = 150 bits (378), Expect = 8e-37, Method: Composition-based stats. Identities = 66/309 (21%), Positives = 111/309 (36%), Gaps = 49/309 (16%) Query 228 PFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR 285 P +L+ ++ D+ + +G Q+ ++ L R+ L R Sbjct 279 PTRELVSQIYDESRKFAYRSWVRPCVVYGGADIGSQLRQMERGCDLLVATPGRLVDLIER 338 Query 286 -----RYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH 340 + L++ + R +D Q R V + + R +F Sbjct 339 GRISLQNIKYLVLDEADRMLDMGFEPQ---IRRIVEGEDMPGVQNRQTLMFSATFPRDIQ 395 Query 341 L------------------ATHGPENPKLEMLEKI-----LQRQFSSSNSPRGIIFTRTR 377 + +T K+E +E I L + + +IF T+ Sbjct 396 MLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDIDKRSVLLDILHTHGAGLTLIFVETK 455 Query 378 QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA 437 + A SL +L Q T S TQR+++ ++ F++G +LVA Sbjct 456 RMADSLSDFLINQNFPAT--------------SIHGDRTQRERERALEMFRNGRCPILVA 501 Query 438 TSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELI 495 T+VA GLDIP+ VV Y L T+ V GR RA + + G+R + R+LI Sbjct 502 TAVAARGLDIPNVKHVVNYDLPTDIDDYVHRIGRTGRAGNTGISTAFFNRGNRGVCRDLI 561 Query 496 NEALETLME 504 E E Sbjct 562 ELLKEANQE 570 Score = 48.6 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 26/140 (19%), Positives = 47/140 (34%), Gaps = 23/140 (16%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKV------------------VVLVNR 56 + G++++ TG+GKT + + V ++L Sbjct 221 MGGRDLMACAQTGSGKTGGFLFPILSQAFQTGPSPVPANAAGSFGRTRKAYPTSLILAPT 280 Query 57 VHLVTQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE 115 LV+Q +E R+ W + G + + R DLL+ T L + Sbjct 281 RELVSQIYDESRKFAYRSWVRPCVVYGGADIGSQLRQMERGCDLLVATPGRLVDLI---- 336 Query 116 EEEHVELTVFSLIVVDECHH 135 E + L +V+DE Sbjct 337 ERGRISLQNIKYLVLDEADR 356 >sp|C8V8H4|DED1_EMENI ATP-dependent RNA helicase ded1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=ded1 PE=3 SV=1 Length=668 Score = 149 bits (377), Expect = 1e-36, Method: Composition-based stats. Identities = 63/309 (20%), Positives = 112/309 (36%), Gaps = 48/309 (16%) Query 228 PFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR 285 P +L+ ++ D+ + +G Q+ ++ L R+ L R Sbjct 279 PTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIER 338 Query 286 R-----YNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH 340 L++ + R +D + R + +R+ L ++ Sbjct 339 GRISLVNIKYLILDEADRMLDM--GFEPQIRRIVEGEDMPNVNDRQTLMFSATFPRDIQM 396 Query 341 LA-----------------THGPENPKLEMLEK------ILQRQFSSSNSPRGIIFTRTR 377 LA T K+E +E +L + + +IF T+ Sbjct 397 LARDFLKDYVFLSVGRVGSTSENITQKVEYVEDHDKRSVLLDILHTHGTTGLTLIFVETK 456 Query 378 QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA 437 + A +L +L Q+ T + TQR+++ ++ F+ G +LVA Sbjct 457 RMADALSEFLINQRFPAT--------------AIHGDRTQRERERALEMFRSGRYPILVA 502 Query 438 TSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELI 495 T+VA GLDIP+ V+ Y L T+ V GR RA + A G+R + R+LI Sbjct 503 TAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVRDLI 562 Query 496 NEALETLME 504 + E E Sbjct 563 DLLKEAHQE 571 Score = 48.6 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 25/140 (18%), Positives = 50/140 (36%), Gaps = 23/140 (16%) Query 15 LEGKNIIIWLPTGAGKT--RAAAYVAKRH------------LETVDGAKV----VVLVNR 56 + G++++ TG+GKT +++ + + K ++L Sbjct 221 MNGRDLMACAQTGSGKTGGFLFPILSQAYQNGPAAPPPSAAGQFGRQRKAYPTSLILAPT 280 Query 57 VHLVTQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE 115 LV+Q +E R+ W + G + + R DLL+ T L + Sbjct 281 RELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLI---- 336 Query 116 EEEHVELTVFSLIVVDECHH 135 E + L +++DE Sbjct 337 ERGRISLVNIKYLILDEADR 356 >sp|P44922|RHLB_HAEIN ATP-dependent RNA helicase RhlB OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=rhlB PE=3 SV=2 Length=415 Score = 145 bits (365), Expect = 2e-36, Method: Composition-based stats. Identities = 69/354 (19%), Positives = 125/354 (35%), Gaps = 63/354 (18%) Query 214 PCKQYNLCHRRSQDPFGDLLKKLMD--QIHDHLEMPELSRKFGTQMYEQQVVKLSEAAAL 271 P +Y P +L ++ + + + + +G Y++Q+ + + Sbjct 77 PNLKYPHPRALILAPTRELAVQISNDAEFLAKASGLKTALAYGGDGYDKQLQAIERGVDI 136 Query 272 AGLQEQRVYALHLRRYN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERR 326 RV + +++ + R D L ++D + + + R Sbjct 137 LIGTTGRVIDYVKQGVIGLDEIQVVVLDEADRMFD-LGFIRDIRY----LLRKCPAPQAR 191 Query 327 LLALFDD----RKNELAHLATHGPENPKL----EMLEKILQRQFSSSNSP---------- 368 L LF + ELA + PE ++ + +I + F SN Sbjct 192 LTMLFSATLSYKVRELAFEDMNEPEYIEIEPEQKTGHRIKEELFYPSNQDKMALLLTLME 251 Query 369 -----RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEV 423 R I+F T+ + +L R LL G + Q+ + + Sbjct 252 DEWPERCIVFANTKHRCEEIWGYL------AADGHRVGLLTG--------DVAQKKRLSL 297 Query 424 IQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSV--YA 480 +++F DG L++LVAT VA GL I V Y L + V GR RA +S + Sbjct 298 LKQFTDGDLDILVATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSIS 357 Query 481 FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRA 534 F E + L A+E + ++ Q +A + +L + KRA Sbjct 358 FACEEYAMNLP------AIEEYIGHSIPVSQYETEA-----LLELPKPYRLKRA 400 Score = 43.6 bits (101), Expect = 0.005, Method: Composition-based stats. Identities = 26/119 (22%), Positives = 41/119 (34%), Gaps = 14/119 (12%) Query 26 TGAGKTRAAAYVAKRHL-------ETVDGAKVVVLVNRVHLVTQ--HGEEFRRMLDGRWT 76 TG GKT A HL + ++L L Q + EF G T Sbjct 55 TGTGKTMAFLTATFHHLLTHQDPNLKYPHPRALILAPTRELAVQISNDAEFLAKASGLKT 114 Query 77 VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH 135 GD + + R D+LI T + + ++ + L ++V+DE Sbjct 115 ALAYGGDGYDKQL-QAIERGVDILIGTTGRVIDYV----KQGVIGLDEIQVVVLDEADR 168 >sp|A1CH78|DED1_ASPCL ATP-dependent RNA helicase ded1 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=ded1 PE=3 SV=1 Length=681 Score = 149 bits (375), Expect = 2e-36, Method: Composition-based stats. Identities = 65/309 (21%), Positives = 112/309 (36%), Gaps = 48/309 (16%) Query 228 PFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR 285 P +L+ ++ D+ + +G Q+ ++ L R+ L R Sbjct 284 PTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIER 343 Query 286 R-----YNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH 340 + L++ + R +D + R + ER+ L ++ Sbjct 344 GRISLVNINYLVLDEADRMLDM--GFEPQIRRIVEGEDMPSVNERQTLMFSATFPRDIQM 401 Query 341 LA-----------------THGPENPKLEMLEK------ILQRQFSSSNSPRGIIFTRTR 377 LA T K+E +E +L + S +IF T+ Sbjct 402 LARDFLKDYVFLSVGRVGSTSENITQKVEYVEDVDKRSVLLDILHTHGTSGLTLIFVETK 461 Query 378 QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA 437 + A +L +L Q+ T + TQR+++ ++ F+ +LVA Sbjct 462 RMADALSDFLINQRFPAT--------------AIHGDRTQRERERALEMFRSARCPILVA 507 Query 438 TSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELI 495 T+VA GLDIP+ V+ Y L T+ V GR RA + A G+R + RELI Sbjct 508 TAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVRELI 567 Query 496 NEALETLME 504 + E E Sbjct 568 DLLKEAHQE 576 Score = 48.6 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 50/142 (35%), Gaps = 25/142 (18%) Query 15 LEGKNIIIWLPTGAGKT--RAAAYVAKRHLETV--------------DGAKV----VVLV 54 + G++++ TG+GKT +++ + K ++L Sbjct 224 MNGRDLMACAQTGSGKTGGFLFPILSQAFQKGPSAVPAQASGQMSYGRQRKAYPTSLILA 283 Query 55 NRVHLVTQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTS 113 LV+Q +E R+ W + G + + R DLL+ T L + Sbjct 284 PTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLI-- 341 Query 114 PEEEEHVELTVFSLIVVDECHH 135 E + L + +V+DE Sbjct 342 --ERGRISLVNINYLVLDEADR 361 >sp|Q75B50|DED1_EREGS ATP-dependent RNA helicase DED1 OS=Eremothecium gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=DED1 PE=3 SV=2 Length=623 Score = 148 bits (372), Expect = 3e-36, Method: Composition-based stats. Identities = 64/348 (18%), Positives = 120/348 (34%), Gaps = 47/348 (14%) Query 228 PFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR 285 P +L ++ D+ + +G QQ+ +L L R+ L R Sbjct 236 PTRELATQIFDEAKKFTYRSWVKPCVVYGGADIRQQIRELERGCDLIVATPGRLNDLLER 295 Query 286 RY-----NDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH 340 L++ + R +D + R+ L ++ H Sbjct 296 GKISLCSVKYLVLDEADRMLDM--GFEPQIRHIVEGCDMPTVENRQTLMFSATFPTDIQH 353 Query 341 LA-----------------THGPENPKLEMLEKI-----LQRQFSSSNSPRGIIFTRTRQ 378 LA T K+ +E I L ++S+ ++F T++ Sbjct 354 LAADFLKDYIFLSVGRVGSTSENITQKVLHVEDIDKRSVLLDLLAASDGGLTLVFVETKR 413 Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT 438 A +L +L ++ ++ TQ +++ + F+ G N+LVAT Sbjct 414 MADALTDFL--------------IMQNLSATAIHGDRTQAERERALAFFRTGRANVLVAT 459 Query 439 SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELIN 496 +VA GLDIP+ V+ Y L ++ V GR RA + A G++ + +EL++ Sbjct 460 AVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGLATAFFNRGNKNVVKELVD 519 Query 497 EALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQR 544 E E Q + Y + + + R+ +R Sbjct 520 ILEEANQEVPSFLSQIAKEMSYGGGGGKSSRGGRGGYSRGNSTRDFRR 567 Score = 49.0 bits (115), Expect = 1e-04, Method: Composition-based stats. Identities = 28/136 (21%), Positives = 46/136 (34%), Gaps = 20/136 (15%) Query 16 EGKNIIIWLPTGAGKT--RAAAYVAKRHLETVDGAK-------------VVVLVNRVHLV 60 +G++++ TG+GKT +++ VVL L Sbjct 182 KGRDLMACAQTGSGKTGGFLFPVLSQSFSNGPASTPDESGYYMRKAYPTAVVLAPTRELA 241 Query 61 TQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 TQ +E ++ W + G R L R DL++ T L L E Sbjct 242 TQIFDEAKKFTYRSWVKPCVVYGGADIRQQIRELERGCDLIVATPGRLNDLL----ERGK 297 Query 120 VELTVFSLIVVDECHH 135 + L +V+DE Sbjct 298 ISLCSVKYLVLDEADR 313 >sp|Q1DJF0|DED1_COCIM ATP-dependent RNA helicase DED1 OS=Coccidioides immitis (strain RS) OX=246410 GN=DED1 PE=3 SV=2 Length=665 Score = 148 bits (373), Expect = 3e-36, Method: Composition-based stats. Identities = 64/308 (21%), Positives = 110/308 (36%), Gaps = 47/308 (15%) Query 228 PFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR 285 P +L+ ++ D+ + +G Q+ ++ L R+ L R Sbjct 276 PTRELVSQIYDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIER 335 Query 286 -----RYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH 340 L++ + R +D + R + R+ L ++ Sbjct 336 GRISLCNIKYLVLDEADRMLDM--GFEPQIRRIVEGEDMPPVNGRQTLMFSATFPRDIQM 393 Query 341 LA-----------------THGPENPKLEMLEK-----ILQRQFSSSNSPRGIIFTRTRQ 378 LA T K+E +E +L + + +IF T++ Sbjct 394 LARDFLKDYVFLSVGRVGSTSENITQKVEYVEDADKRSVLLDILHTHGTGLTLIFVETKR 453 Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT 438 A SL +L Q T + TQR+++ ++ F++G +LVAT Sbjct 454 MADSLSEFLINQNFPAT--------------AIHGDRTQRERERALEYFRNGRCPILVAT 499 Query 439 SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELIN 496 +VA GLDIP+ VV Y L T+ V GR RA + + G+R + R+LI Sbjct 500 AVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGLSTAFFNRGNRGVVRDLIE 559 Query 497 EALETLME 504 E E Sbjct 560 LLKEAHQE 567 Score = 48.3 bits (113), Expect = 2e-04, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 48/142 (34%), Gaps = 25/142 (18%) Query 15 LEGKNIIIWLPTGAGKT--RAAAYVAK--------------RHLETVDGAKV----VVLV 54 + G++++ TG+GKT +++ K ++L Sbjct 216 MGGRDLMACAQTGSGKTGGFLFPILSQAFKNGPSAVPTQNANQFSYGRQRKAYPTSLILA 275 Query 55 NRVHLVTQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTS 113 LV+Q +E R+ W + G + + R DLL+ T L + Sbjct 276 PTRELVSQIYDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLI-- 333 Query 114 PEEEEHVELTVFSLIVVDECHH 135 E + L +V+DE Sbjct 334 --ERGRISLCNIKYLVLDEADR 353 >sp|Q4P733|DED1_USTMA ATP-dependent RNA helicase DED1 OS=Ustilago maydis (strain 521 / FGSC 9021) OX=237631 GN=DED1 PE=3 SV=1 Length=672 Score = 148 bits (372), Expect = 5e-36, Method: Composition-based stats. Identities = 62/309 (20%), Positives = 111/309 (36%), Gaps = 48/309 (16%) Query 228 PFGDLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR 285 P +L+ ++ D+ + +G Q+ ++ L R+ L R Sbjct 283 PTRELVSQIHDEARKFTYRSWVKPAVVYGGADIVTQLRQIERGCDLLSATPGRLVDLMER 342 Query 286 -----RYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH 340 L++ + R +D + R + +R+ L ++ Sbjct 343 GRISLSNVRFLVLDEADRMLDM--GFEPQIRRIVEGEDMPGVMDRQTLMFSATFPRDIQL 400 Query 341 LA-----------------THGPENPKLEMLEK------ILQRQFSSSNSPRGIIFTRTR 377 LA T K+E +E +L S + +IF T+ Sbjct 401 LAKDFLKEYVFLSVGRVGSTSENITQKIEYVEDDDKRSVLLDVLASMPSGGLTLIFVETK 460 Query 378 QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA 437 + A L +L + + G +S TQR+++ ++ F+ G ++VA Sbjct 461 RMADMLSDFLLRSK--------------IGATSIHGDRTQRERERALELFRSGKTPIMVA 506 Query 438 TSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELI 495 T+VA GLDIP+ VV Y L ++ V GR RA +A G++ + R+LI Sbjct 507 TAVAARGLDIPNVTHVVNYDLPSDVDDYVHRIGRTGRAGNVGHATAFFNRGNKNIVRDLI 566 Query 496 NEALETLME 504 E E Sbjct 567 ELLKEANQE 575 Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats. Identities = 25/133 (19%), Positives = 39/133 (29%), Gaps = 24/133 (18%) Query 23 WLPTGAGKT-----------RA--------AAYVAKRHLETVDGAKVVVLVNRVHLVTQH 63 TG+GKT A + ++L LV+Q Sbjct 232 CAQTGSGKTGGFLFPILSALFTHGPPPPSAAEMAQGGYNRRKAYPSTLILAPTRELVSQI 291 Query 64 GEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 +E R+ W + G + R DLL T L + E + L Sbjct 292 HDEARKFTYRSWVKPAVVYGGADIVTQLRQIERGCDLLSATPGRLVDLM----ERGRISL 347 Query 123 TVFSLIVVDECHH 135 + +V+DE Sbjct 348 SNVRFLVLDEADR 360 >sp|Q5QYF8|RHLB_IDILO ATP-dependent RNA helicase RhlB OS=Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR) OX=283942 GN=rhlB PE=3 SV=1 Length=425 Score = 144 bits (362), Expect = 5e-36, Method: Composition-based stats. Identities = 58/296 (20%), Positives = 106/296 (36%), Gaps = 56/296 (19%) Query 247 PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR-----RYNDALLIHDTVRAVD 301 ++ +G + YE Q +L+ + R+ + + + + +++ + R D Sbjct 112 LKMGVIYGGEGYEGQKEQLAAQPDILVGTTGRLIDFYKQDLFSLKDIEVVVLDEADRMFD 171 Query 302 ALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPENPKLEMLEK- 356 L + D + ++ +RL LF R ELA+ + P ++E L+K Sbjct 172 -LGFIDDIRY----LLQKMPDPSKRLNLLFSATLSYRVQELAYEHMNAPTKLEVEPLQKT 226 Query 357 ------------------ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI 398 +L + I+F T+ + WL + Sbjct 227 ATRVTEELFYPSKPEKFPLLLTLIEEDWPDKAIVFANTKHGCEKVHGWLVANEH------ 280 Query 399 RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL 458 RA LL G + Q+ + +++ F +G L+ LVAT VA GL IP V + L Sbjct 281 RAGLLTG--------DVPQKKRLRILEDFAEGKLDFLVATDVAARGLHIPEVTHVYNFDL 332 Query 459 LTNEISMVQAR---GRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQ 511 + V GRA A + + E L A+E + + + Sbjct 333 PDDCEDYVHRIGRTGRAGASGAAISLACEEYVYNLP------AIEDYIGHTIPVTK 382 Score = 43.2 bits (100), Expect = 0.007, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 41/119 (34%), Gaps = 14/119 (12%) Query 26 TGAGKTRAAAY------VAKRHL--ETVDGAKVVVLVNRVHLVTQ-HGEEFRRMLDGRWT 76 TG GKT A + + +T G + +++ L Q + + Sbjct 55 TGTGKTL-AFLLATFNRLMQNESSEKTESGPRALIMAPTRELAIQIAHDADALIEHCGLK 113 Query 77 VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH 135 + + G G LA D+L+ T L +++ L ++V+DE Sbjct 114 MGVIYGGEGYEGQKEQLAAQPDILVGTTGRLIDFY----KQDLFSLKDIEVVVLDEADR 168 >sp|Q0CLJ6|DED1_ASPTN ATP-dependent RNA helicase ded1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=ded1 PE=3 SV=1 Length=674 Score = 147 bits (371), Expect = 6e-36, Method: Composition-based stats. Identities = 65/309 (21%), Positives = 112/309 (36%), Gaps = 48/309 (16%) Query 228 PFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR 285 P +L+ ++ D+ + +G Q+ ++ L R+ L R Sbjct 281 PTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIER 340 Query 286 R-----YNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH 340 L++ + R +D + R + +R+ L ++ Sbjct 341 GRISLVNIKYLILDEADRMLDM--GFEPQIRRIVEGEDMPHVNDRQTLMFSATFPRDIQM 398 Query 341 LA-----------------THGPENPKLEMLEK------ILQRQFSSSNSPRGIIFTRTR 377 LA T K+E +E +L + S +IF T+ Sbjct 399 LARDFLKDYVFLSVGRVGSTSENITQKVEYVEDHDKRSVLLDILHTHGTSGLTLIFVETK 458 Query 378 QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA 437 + A SL +L Q+ T + TQR+++ ++ F+ G +LVA Sbjct 459 RMADSLSDFLLNQRFPAT--------------AIHGDRTQRERERALEMFRSGRCPILVA 504 Query 438 TSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELI 495 T+VA GLDIP+ V+ Y L T+ V GR RA + A G+R + R+LI Sbjct 505 TAVAASGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVRDLI 564 Query 496 NEALETLME 504 + E E Sbjct 565 DLLKEAHQE 573 Score = 48.3 bits (113), Expect = 2e-04, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 49/142 (35%), Gaps = 25/142 (18%) Query 15 LEGKNIIIWLPTGAGKT--RAAAYVAKRH--------------LETVDGAKV----VVLV 54 + G++++ TG+GKT +++ L K ++L Sbjct 221 MNGRDLMACAQTGSGKTGGFLFPILSQAFQNGPSPTPAPAGGQLGYGRQRKAYPTSLILA 280 Query 55 NRVHLVTQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTS 113 LV+Q +E R+ W + G + + R DLL+ T L + Sbjct 281 PTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLI-- 338 Query 114 PEEEEHVELTVFSLIVVDECHH 135 E + L +++DE Sbjct 339 --ERGRISLVNIKYLILDEADR 358 >sp|Q8LA13|RH11_ARATH DEAD-box ATP-dependent RNA helicase 11 OS=Arabidopsis thaliana OX=3702 GN=RH11 PE=1 SV=1 Length=612 Score = 146 bits (369), Expect = 7e-36, Method: Composition-based stats. Identities = 72/340 (21%), Positives = 116/340 (34%), Gaps = 67/340 (20%) Query 209 EHSQQPCKQYNLCHRRSQDPFGDLLK---KLMDQIHDHLEMP------ELSRKFGTQMYE 259 +H ++P R+ PF +L +L QIHD + ++ +G Sbjct 217 QHVERPR------GSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIH 270 Query 260 QQVVKLSEAAALAGLQEQRVYALHLRRYND-----ALLIHDTVRAVDALAALQDFYHREH 314 QQ+ +L + R+ L R L + + R +D Q R+ Sbjct 271 QQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQ---IRKI 327 Query 315 VTKTQILCAERRLLALFD---------------------------DRKNELAHLATHGPE 347 V + + R LF + + E Sbjct 328 VEQMDMPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVGSSTDLITQRVEFVQE 387 Query 348 NPKLEMLEKILQRQFSS-SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA 406 + K L +L Q + ++F T++ A +L WL + T Sbjct 388 SDKRSHLMDLLHAQRETQDKQSLTLVFVETKRGADTLENWLCMNEFPAT----------- 436 Query 407 GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV 466 S TQ++++ ++ F+ G +LVAT VA GLDIPH VV + L + V Sbjct 437 ---SIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYV 493 Query 467 QARGR-ARADQSVYAF-VATEGSRELKRELINEALETLME 504 GR RA +S A E + +L R L E E Sbjct 494 HRIGRTGRAGKSGIATAFFNENNAQLARSLAELMQEANQE 533 Score = 50.2 bits (118), Expect = 6e-05, Method: Composition-based stats. Identities = 29/141 (21%), Positives = 49/141 (35%), Gaps = 16/141 (11%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT------RAAAYVAKRHLETVDGAKVVV-----LVN 55 Q I L ++++ TG+GKT + + +H+E G++ V L Sbjct 178 QRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSP 237 Query 56 RVHLVTQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP 114 L Q +E ++ V G L R D+L+ T L L Sbjct 238 TRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRLNDLL--- 294 Query 115 EEEEHVELTVFSLIVVDECHH 135 E V + + + +DE Sbjct 295 -ERARVSMQMIRFLALDEADR 314 >sp|O13370|DED1_SCHPO ATP-dependent RNA helicase ded1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ded1 PE=1 SV=1 Length=636 Score = 146 bits (369), Expect = 8e-36, Method: Composition-based stats. Identities = 68/337 (20%), Positives = 109/337 (32%), Gaps = 67/337 (20%) Query 214 PCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKF------------GTQMYEQQ 261 P Q R + + L L ++ E SRKF G Q Sbjct 240 PVDQDAGMGYRPRKAYPTTLI-LAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQ 298 Query 262 VVKLSEAAALAGLQEQRVYALHLR-----RYNDALLIHDTVRAVDALAALQDFYHREHVT 316 + ++ + L R+ L R L++ + R +D Q R V Sbjct 299 IRQIDQGCDLLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLDMGFEPQ---IRHIVE 355 Query 317 KTQILCAERRLLALFD---------------------------DRKNELAHLATHGPENP 349 + E R +F + H ++ Sbjct 356 GADMTSVEERQTLMFSATFPRDIQLLARDFLKDYVFLSVGRVGSTSENITQKVVHVEDSE 415 Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K L IL +IF T++ A +L +L T Sbjct 416 KRSYLLDILHTL---PPEGLTLIFVETKRMADTLTDYLLNSNFPAT-------------- 458 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 S TQR+++ ++ F+ G +++VAT+VA GLDIP+ V+ Y L T+ V Sbjct 459 SIHGDRTQRERERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVHRI 518 Query 470 GR-ARADQSVYAF-VATEGSRELKRELINEALETLME 504 GR RA + A ++ + +ELI E E Sbjct 519 GRTGRAGNTGQAVAFFNRNNKGIAKELIELLQEANQE 555 Score = 49.4 bits (116), Expect = 9e-05, Method: Composition-based stats. Identities = 32/149 (21%), Positives = 49/149 (33%), Gaps = 24/149 (16%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTR---------------AAAYVAKRHLETVDGAKV- 50 Q I G++++ TG+GKT AA V + K Sbjct 196 QKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAY 255 Query 51 ---VVLVNRVHLVTQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAEL 106 ++L LV Q EE R+ W + G RA + + DLL T Sbjct 256 PTTLILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSATPGR 315 Query 107 LQMALTSPEEEEHVELTVFSLIVVDECHH 135 L + + + L +V+DE Sbjct 316 LVDLI----DRGRISLANIKFLVLDEADR 340 >sp|Q8XA87|DEAD_ECO57 ATP-dependent RNA helicase DeaD OS=Escherichia coli O157:H7 OX=83334 GN=deaD PE=3 SV=3 Length=629 Score = 146 bits (367), Expect = 2e-35, Method: Composition-based stats. Identities = 65/345 (19%), Positives = 131/345 (38%), Gaps = 50/345 (14%) Query 207 LQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLS 266 L ++ K + + + M H+ + +G Q Y+ Q+ L Sbjct 64 LLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 Query 267 EAAALAGLQEQRVYALHLRRYNDAL-----LIHDTVRAVDALAALQDFY---------HR 312 + + R+ HL+R L L+ D + + ++D H+ Sbjct 124 QGPQIVVGTPGRLLD-HLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 Query 313 EHVTKTQILCAERRLLALFDDRKNEL---AHLATHGPENP---------KLEMLEKILQR 360 + + A RR+ F E+ + + T + K E L + L+ Sbjct 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA 242 Query 361 QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ 420 + + IIF RT+ + + L++ G +++ + M Q + Sbjct 243 EDFDA----AIIFVRTKNATLEVAEALERN--------------GYNSAALNGDMNQALR 284 Query 421 QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVY 479 ++ +++ +DG L++L+AT VA GLD+ ++VV Y + + S V GR RA ++ Sbjct 285 EQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGR 344 Query 480 AFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD 524 A + E +R L N +E M+ + V+ + + + Sbjct 345 ALLFVENRE--RRLLRN--IERTMKLTIPEVELPNAELLGKRRLE 385 Score = 57.9 bits (138), Expect = 2e-07, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 53/131 (40%), Gaps = 9/131 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAY-VAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q E I L G++++ TG+GKT A + + + + +++VL L Q E Sbjct 33 QAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAE 92 Query 66 E---FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 F + + G V G L + +++ T L L + ++L Sbjct 93 AMTDFSKHMRGVNVVALYGGQRYDVQLR-ALRQGPQIVVGTPGRLLDHL----KRGTLDL 147 Query 123 TVFSLIVVDEC 133 + S +V+DE Sbjct 148 SKLSGLVLDEA 158 >sp|P0A9P8|DEAD_SHIFL ATP-dependent RNA helicase DeaD OS=Shigella flexneri OX=623 GN=deaD PE=3 SV=2 Length=629 Score = 145 bits (366), Expect = 2e-35, Method: Composition-based stats. Identities = 65/345 (19%), Positives = 131/345 (38%), Gaps = 50/345 (14%) Query 207 LQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLS 266 L ++ K + + + M H+ + +G Q Y+ Q+ L Sbjct 64 LLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 Query 267 EAAALAGLQEQRVYALHLRRYNDAL-----LIHDTVRAVDALAALQDFY---------HR 312 + + R+ HL+R L L+ D + + ++D H+ Sbjct 124 QGPQIVVGTPGRLLD-HLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 Query 313 EHVTKTQILCAERRLLALFDDRKNEL---AHLATHGPENP---------KLEMLEKILQR 360 + + A RR+ F E+ + + T + K E L + L+ Sbjct 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA 242 Query 361 QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ 420 + + IIF RT+ + + L++ G +++ + M Q + Sbjct 243 EDFDA----AIIFVRTKNATLEVAEALERN--------------GYNSAALNGDMNQALR 284 Query 421 QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVY 479 ++ +++ +DG L++L+AT VA GLD+ ++VV Y + + S V GR RA ++ Sbjct 285 EQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGR 344 Query 480 AFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD 524 A + E +R L N +E M+ + V+ + + + Sbjct 345 ALLFVENRE--RRLLRN--IERTMKLTIPEVELPNAELLGKRRLE 385 Score = 57.5 bits (137), Expect = 3e-07, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 53/131 (40%), Gaps = 9/131 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAY-VAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q E I L G++++ TG+GKT A + + + + +++VL L Q E Sbjct 33 QAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAE 92 Query 66 E---FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 F + + G V G L + +++ T L L + ++L Sbjct 93 AMTDFSKHMRGVNVVALYGGQRYDVQLR-ALRQGPQIVVGTPGRLLDHL----KRGTLDL 147 Query 123 TVFSLIVVDEC 133 + S +V+DE Sbjct 148 SKLSGLVLDEA 158 >sp|P0A9P6|DEAD_ECOLI ATP-dependent RNA helicase DeaD OS=Escherichia coli (strain K12) OX=83333 GN=deaD PE=1 SV=2 Length=629 Score = 145 bits (366), Expect = 2e-35, Method: Composition-based stats. Identities = 65/345 (19%), Positives = 131/345 (38%), Gaps = 50/345 (14%) Query 207 LQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLS 266 L ++ K + + + M H+ + +G Q Y+ Q+ L Sbjct 64 LLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 Query 267 EAAALAGLQEQRVYALHLRRYNDAL-----LIHDTVRAVDALAALQDFY---------HR 312 + + R+ HL+R L L+ D + + ++D H+ Sbjct 124 QGPQIVVGTPGRLLD-HLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 Query 313 EHVTKTQILCAERRLLALFDDRKNEL---AHLATHGPENP---------KLEMLEKILQR 360 + + A RR+ F E+ + + T + K E L + L+ Sbjct 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA 242 Query 361 QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ 420 + + IIF RT+ + + L++ G +++ + M Q + Sbjct 243 EDFDA----AIIFVRTKNATLEVAEALERN--------------GYNSAALNGDMNQALR 284 Query 421 QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVY 479 ++ +++ +DG L++L+AT VA GLD+ ++VV Y + + S V GR RA ++ Sbjct 285 EQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGR 344 Query 480 AFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD 524 A + E +R L N +E M+ + V+ + + + Sbjct 345 ALLFVENRE--RRLLRN--IERTMKLTIPEVELPNAELLGKRRLE 385 Score = 57.5 bits (137), Expect = 3e-07, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 53/131 (40%), Gaps = 9/131 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAY-VAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q E I L G++++ TG+GKT A + + + + +++VL L Q E Sbjct 33 QAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAE 92 Query 66 E---FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 F + + G V G L + +++ T L L + ++L Sbjct 93 AMTDFSKHMRGVNVVALYGGQRYDVQLR-ALRQGPQIVVGTPGRLLDHL----KRGTLDL 147 Query 123 TVFSLIVVDEC 133 + S +V+DE Sbjct 148 SKLSGLVLDEA 158 >sp|P0A9P7|DEAD_ECOL6 ATP-dependent RNA helicase DeaD OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=deaD PE=3 SV=2 Length=629 Score = 145 bits (366), Expect = 2e-35, Method: Composition-based stats. Identities = 65/345 (19%), Positives = 131/345 (38%), Gaps = 50/345 (14%) Query 207 LQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLS 266 L ++ K + + + M H+ + +G Q Y+ Q+ L Sbjct 64 LLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 Query 267 EAAALAGLQEQRVYALHLRRYNDAL-----LIHDTVRAVDALAALQDFY---------HR 312 + + R+ HL+R L L+ D + + ++D H+ Sbjct 124 QGPQIVVGTPGRLLD-HLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 Query 313 EHVTKTQILCAERRLLALFDDRKNEL---AHLATHGPENP---------KLEMLEKILQR 360 + + A RR+ F E+ + + T + K E L + L+ Sbjct 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA 242 Query 361 QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ 420 + + IIF RT+ + + L++ G +++ + M Q + Sbjct 243 EDFDA----AIIFVRTKNATLEVAEALERN--------------GYNSAALNGDMNQALR 284 Query 421 QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVY 479 ++ +++ +DG L++L+AT VA GLD+ ++VV Y + + S V GR RA ++ Sbjct 285 EQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGR 344 Query 480 AFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD 524 A + E +R L N +E M+ + V+ + + + Sbjct 345 ALLFVENRE--RRLLRN--IERTMKLTIPEVELPNAELLGKRRLE 385 Score = 57.5 bits (137), Expect = 3e-07, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 53/131 (40%), Gaps = 9/131 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAY-VAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q E I L G++++ TG+GKT A + + + + +++VL L Q E Sbjct 33 QAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAE 92 Query 66 E---FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 F + + G V G L + +++ T L L + ++L Sbjct 93 AMTDFSKHMRGVNVVALYGGQRYDVQLR-ALRQGPQIVVGTPGRLLDHL----KRGTLDL 147 Query 123 TVFSLIVVDEC 133 + S +V+DE Sbjct 148 SKLSGLVLDEA 158 >sp|Q8TFK8|DED1_CANGA ATP-dependent RNA helicase DED1 OS=Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DED1 PE=3 SV=1 Length=617 Score = 144 bits (364), Expect = 3e-35, Method: Composition-based stats. Identities = 61/357 (17%), Positives = 112/357 (31%), Gaps = 53/357 (15%) Query 228 PFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR 285 P +L ++ D+ + +G Q+ ++ L R+ L R Sbjct 236 PTRELATQIFDEAKKFCYRSWVKPCVVYGGAPIGNQMREMDHGCDLLVATPGRLNDLLER 295 Query 286 RYND-----ALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLAL---FDDRKNE 337 L++ + R +D + ER+ L F Sbjct 296 GKVSLSNVKYLVLDEADRMLDM--GFEPQIRHIVEDCDMPPTGERQTLMFSATFPHDIQH 353 Query 338 LAHLATHGP------------ENPKLEMLE-------KILQRQFSSSNSPRGIIFTRTRQ 378 LA H EN +L L ++SN +IF T++ Sbjct 354 LARDFLHDYIFLSVGRVGSTSENITQRILYVENRDKNSALLDLLAASNDNLTLIFVETKR 413 Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT 438 A L +L ++ ++ +Q +++ + F+ G N+LVAT Sbjct 414 MADQLTDFL--------------IMQNFSATAIHGDRSQAERERALAAFRSGRANILVAT 459 Query 439 SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKR---- 492 +VA GLDIP+ V+ Y L ++ V GR RA + A + + + Sbjct 460 AVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGVATAFFNRDNNNIVKGLYE 519 Query 493 --ELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQF 547 E N+ + +E + V ++ + R Q + Sbjct 520 ILEEANQEIPPFLEDCLREVSFSRSGSNRSTRGNRSSNTRDYRKHGGNGSFGQNSRN 576 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 27/137 (20%), Positives = 46/137 (34%), Gaps = 21/137 (15%) Query 16 EGKNIIIWLPTGAGKT--RAAAYVAKRHLETVDGAK--------------VVVLVNRVHL 59 +G++++ TG+GKT +++ L VV+ L Sbjct 181 KGRDLMACAQTGSGKTGGFLFPVLSESFLTGPAEKAANDGYSYQRKAFPTAVVMAPTREL 240 Query 60 VTQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEE 118 TQ +E ++ W + G + DLL+ T L L E Sbjct 241 ATQIFDEAKKFCYRSWVKPCVVYGGAPIGNQMREMDHGCDLLVATPGRLNDLL----ERG 296 Query 119 HVELTVFSLIVVDECHH 135 V L+ +V+DE Sbjct 297 KVSLSNVKYLVLDEADR 313 >sp|Q6CB69|DED1_YARLI ATP-dependent RNA helicase DED1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DED1 PE=3 SV=1 Length=618 Score = 144 bits (362), Expect = 6e-35, Method: Composition-based stats. Identities = 66/328 (20%), Positives = 119/328 (36%), Gaps = 35/328 (11%) Query 203 CCPQLQEHSQQPCKQYNLCHRRSQDPFGD-LLKKLMDQIHDHLEMPELSRKFGTQMYEQQ 261 + + + K R +G + + M I ++ + + ++ Sbjct 253 TRELVSQIYDEAKKFAYRSWVRPCVVYGGADIGEQMRNIERGCDLLVAAPGRLVDLIDRG 312 Query 262 VVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQIL 321 V L L + R+ + +RA+ + + D R+ + + Sbjct 313 KVSLENIKYLVLDEADRMLD---------MGFEPQIRAIVQGSGMPDVNERQTLMFSATF 363 Query 322 CAERRLLALFDDRKNELAHL----ATHGPENPKLEMLEK-----ILQRQFSSSNSPRGII 372 ++LA + + +T K+E +E L S++ ++ Sbjct 364 PRNIQMLARDFLKDYIFLSVGRVGSTSENITQKVEYVEDGDKISALLDILSAAGKGLTLV 423 Query 373 FTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTL 432 F T++ A L LQ + T S +QRD++ ++ F+DGT Sbjct 424 FVETKRGADYLCDVLQSEDFPAT--------------SIHGDRSQRDRERALEMFRDGTT 469 Query 433 NLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSREL 490 +LVAT+VA GLDIP+ VV Y L T+ V GR RA + A G++ + Sbjct 470 PILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNKGI 529 Query 491 KRELINEALETLMEQAVAAVQKMDQAEY 518 RELI+ E + +A Y Sbjct 530 VRELIDILKEAHQDVPQFLESTAREASY 557 Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 51/152 (34%), Gaps = 25/152 (16%) Query 2 ELRSYQWEVIMPALEGKNIIIWLPTGAGKT--RAAAYVAKRHLETVDG-----------A 48 ++ Y ++ G++++ TG+GKT +++ Sbjct 185 PVQKYSVPIVAA---GRDLMACAQTGSGKTGGFLFPVLSQSFFHGPSPTPQPTGPRHMHK 241 Query 49 K----VVVLVNRVHLVTQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICT 103 K +VL LV+Q +E ++ W + G ++ R DLL+ Sbjct 242 KAYPTALVLAPTRELVSQIYDEAKKFAYRSWVRPCVVYGGADIGEQMRNIERGCDLLVAA 301 Query 104 AELLQMALTSPEEEEHVELTVFSLIVVDECHH 135 L + + V L +V+DE Sbjct 302 PGRLVDLI----DRGKVSLENIKYLVLDEADR 329 >sp|Q2R1M8|RH52C_ORYSJ DEAD-box ATP-dependent RNA helicase 52C OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0599500 PE=3 SV=1 Length=623 Score = 143 bits (361), Expect = 8e-35, Method: Composition-based stats. Identities = 63/290 (22%), Positives = 99/290 (34%), Gaps = 54/290 (19%) Query 252 KFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND-----ALLIHDTVRAVDALAAL 306 +G QQ+ L + R+ L R L + + R +D Sbjct 269 AYGGAPINQQLRDLERGVDILVATPGRLVDLLERARVSLQSIRYLALDEADRMLDM--GF 326 Query 307 QDFYHREHVTKTQILCAERRLLALFDD-RKNELAHLATHGPEN----------------- 348 + R V + + R LF E+ +A+ EN Sbjct 327 EPQVRRI-VEQMDMPPPGARQTMLFSATFPKEIQRMASDFLENYIFLAVGRVGSSTDLIV 385 Query 349 ---------PKLEMLEKILQRQFSSSNSPR---GIIFTRTRQSAHSLLLWLQQQQGLQTV 396 K L +L Q S+ + ++F T++ A SL WL Sbjct 386 QRVEFVQEADKRSHLMDLLHAQRDSATPGKPTLTLVFVETKRGADSLEHWL--------- 436 Query 397 DIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY 456 + G +S Q++++ ++ F+ G +LVAT VA GLDIPH VV + Sbjct 437 -----CMNGFPATSIHGDRNQQEREYALRSFKSGHTPILVATDVAARGLDIPHVAHVVNF 491 Query 457 GLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLME 504 L + V GR RA +S A E + + R L E+ E Sbjct 492 DLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNSSMARSLAELMQESNQE 541 Score = 48.3 bits (113), Expect = 2e-04, Method: Composition-based stats. Identities = 32/146 (22%), Positives = 50/146 (34%), Gaps = 24/146 (16%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAY---VAKRHLETVDGAK------------VV 51 Q I +L G++++ TG+GKT AA+ + + + + Sbjct 182 QRYAIPISLAGRDLMACAQTGSGKT--AAFCFPIISGIMRGPPAQRPQRGGMRTACPLAL 239 Query 52 VLVNRVHLVTQHGEEFRRML--DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQM 109 +L L Q EE R+ G V G + L R D+L+ T L Sbjct 240 ILSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRD-LERGVDILVATPGRLVD 298 Query 110 ALTSPEEEEHVELTVFSLIVVDECHH 135 L E V L + +DE Sbjct 299 LL----ERARVSLQSIRYLALDEADR 320 >sp|P33906|DEAD_KLEPN ATP-dependent RNA helicase DeaD OS=Klebsiella pneumoniae OX=573 GN=deaD PE=3 SV=3 Length=643 Score = 143 bits (361), Expect = 1e-34, Method: Composition-based stats. Identities = 68/344 (20%), Positives = 134/344 (39%), Gaps = 51/344 (15%) Query 207 LQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLS 266 L + + + + + M + H+ + +G Q Y+ Q+ L Sbjct 64 LLNNIDPELRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALR 123 Query 267 EAAALAGLQEQRVYALHLRRYNDAL-----LIHDTVRAVDALAALQDFY---------HR 312 + + R+ HL+R L L+ D + + ++D H+ Sbjct 124 QGPQIVVGTPGRLLD-HLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 Query 313 EHVTKTQILCAERRLLALFDDRKNEL---AHLATHGPENP---------KLEMLEKILQR 360 + + A RR+ F E+ + + T + K E L + L+ Sbjct 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTAYGMRKNEALVRFLEA 242 Query 361 QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ 420 + + IIF RT+ + + L++ G +++ + M Q + Sbjct 243 EDFDA----AIIFVRTKNATLEVAEALERN--------------GYNSAALNGDMNQALR 284 Query 421 QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVY 479 ++ +++ +DG L++L+AT VA GLD+ ++VV Y + + S V GR RA ++ Sbjct 285 EQALERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGR 344 Query 480 AFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIR 523 A + E +R L N +E M+ + V+ + AE +K R Sbjct 345 ALLFVENRE--RRLLRN--IERTMKLTIPEVE-LPNAELLSKRR 383 Score = 57.9 bits (138), Expect = 2e-07, Method: Composition-based stats. Identities = 30/131 (23%), Positives = 55/131 (42%), Gaps = 9/131 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE 65 Q E I L+G++++ TG+GKT A + +++ A +++VL L Q E Sbjct 33 QAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNNIDPELRAPQILVLAPTRELAVQVAE 92 Query 66 E---FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 F + + G V G L + +++ T L L + ++L Sbjct 93 AMTEFSKHMRGVNVVALYGGQRYDVQLR-ALRQGPQIVVGTPGRLLDHL----KRGTLDL 147 Query 123 TVFSLIVVDEC 133 + S +V+DE Sbjct 148 SKLSGLVLDEA 158 >sp|A4RHF1|DED1_PYRO7 ATP-dependent RNA helicase DED1 OS=Pyricularia oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 GN=DED1 PE=3 SV=2 Length=671 Score = 143 bits (361), Expect = 1e-34, Method: Composition-based stats. Identities = 57/283 (20%), Positives = 105/283 (37%), Gaps = 26/283 (9%) Query 230 GDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRV----YALHLR 285 G + + QI ++ + + E+ + L L + R+ + +R Sbjct 311 GADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIR 370 Query 286 RYNDALLI-HDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATH 344 R + + + R +A Y ++ + + +N + Sbjct 371 RIVEGEDMPNVQDRQTLMFSATFPGYIQQLARDFLKDYIFLSVGRVGSTSENITQRVMEV 430 Query 345 GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI 404 + K+ L +L +IF T+++A L +LQ Q T Sbjct 431 KHRDDKISHLLDLLSTH----GGGLTLIFVETKRNADELSDFLQNQNLPAT--------- 477 Query 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 S TQR+++ ++ F+ G +LVAT+VA GLDIP+ V+ Y L T+ Sbjct 478 -----SIHGDRTQRERERALEMFRTGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDD 532 Query 465 MVQARGR-ARADQSV--YAFVATEGSRELKRELINEALETLME 504 V GR RA + AF + + + +EL+N E + Sbjct 533 YVHRIGRTGRAGNTGIATAFFDMKDNSGVAQELLNILKEAKQD 575 Score = 47.9 bits (112), Expect = 3e-04, Method: Composition-based stats. Identities = 25/142 (18%), Positives = 47/142 (33%), Gaps = 25/142 (18%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKV--------------------VVLV 54 + G++++ TG+GKT + + + ++L Sbjct 222 MGGRDLMACAQTGSGKTGGFLFPILSQAFKTGPSPIPATNQGPGGYGRQRKAYPTSLILA 281 Query 55 NRVHLVTQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTS 113 LV+Q +E R+ W + G + + R DLL+ T L + Sbjct 282 PTRELVSQIYDESRKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLI-- 339 Query 114 PEEEEHVELTVFSLIVVDECHH 135 E + L +V+DE Sbjct 340 --ERGRISLCNIKYLVLDEADR 359 >sp|Q75HJ0|RH37_ORYSJ DEAD-box ATP-dependent RNA helicase 37 OS=Oryza sativa subsp. japonica OX=39947 GN=PL10A PE=2 SV=1 Length=637 Score = 143 bits (360), Expect = 1e-34, Method: Composition-based stats. Identities = 67/361 (19%), Positives = 121/361 (34%), Gaps = 48/361 (13%) Query 160 LPQVLGLTAS--PGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQ-----LQEHSQ 212 P + G+ +S P S+ + +L L + Q + + Sbjct 230 FPIISGIMSSRPPQRPRGSRTAYPLALILSPTRELSVQIHEEARKFAYQTGVRVVVAYGG 289 Query 213 QPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALA 272 P Q R + +LMD + ++ + ++ + Sbjct 290 APIHQQLRELERGVEILVATPGRLMDLLERARVSLQMVKYLALDEADRML---------- 339 Query 273 GLQEQRVYALHLRRYNDALLIHD-TVRAVDALAALQDFYHREHVTKT---QILCAERRLL 328 + +R+ + + + VR +A + + I A R+ Sbjct 340 ----DMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPKEIQRMASDFLADYIFLAVGRVG 395 Query 329 ALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPR---GIIFTRTRQSAHSLLL 385 + D + + E K L +L Q ++ + ++F T++ A +L Sbjct 396 SSTDLIAQRVEFVL----EADKRSYLMDLLHAQKANGTHGKQALTLVFVETKRGADALEN 451 Query 386 WLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGL 445 WL G +S TQ++++ ++ F+ G +LVAT VA GL Sbjct 452 WLYTN--------------GFPATSIHGDRTQQEREYALRSFKSGATPILVATDVAARGL 497 Query 446 DIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLM 503 DIPH V+ + L + V GR RA +S A EG+ L R L E Sbjct 498 DIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNEGNLSLARPLCELMQEANQ 557 Query 504 E 504 E Sbjct 558 E 558 Score = 46.3 bits (108), Expect = 8e-04, Method: Composition-based stats. Identities = 30/144 (21%), Positives = 52/144 (36%), Gaps = 22/144 (15%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAY---VAKRHLETVDGAK----------VVVL 53 Q I ++ G++++ TG+GKT AA+ + + + + ++L Sbjct 201 QRYAIPISIAGRDLMACAQTGSGKT--AAFCFPIISGIMSSRPPQRPRGSRTAYPLALIL 258 Query 54 VNRVHLVTQHGEEFRRML--DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMAL 111 L Q EE R+ G V G + L R ++L+ T L L Sbjct 259 SPTRELSVQIHEEARKFAYQTGVRVVVAYGGAPIHQQLR-ELERGVEILVATPGRLMDLL 317 Query 112 TSPEEEEHVELTVFSLIVVDECHH 135 E V L + + +DE Sbjct 318 ----ERARVSLQMVKYLALDEADR 337 >sp|Q84W89|RH37_ARATH DEAD-box ATP-dependent RNA helicase 37 OS=Arabidopsis thaliana OX=3702 GN=RH37 PE=2 SV=2 Length=633 Score = 143 bits (359), Expect = 2e-34, Method: Composition-based stats. Identities = 75/342 (22%), Positives = 118/342 (35%), Gaps = 69/342 (20%) Query 209 EHSQQPCKQYNLCHRRSQDPFGDLLK---KLMDQIHDHLEMP------ELSRKFGTQMYE 259 +H Q+P R+ P +L +L QIHD + ++ +G Sbjct 225 QHVQRPR------GSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPIN 278 Query 260 QQVVKLSEAAALAGLQEQRVYALHLRRYND-----ALLIHDTVRAVDALAALQDFYHREH 314 QQ+ +L + R+ L R L + + R +D Q R+ Sbjct 279 QQLRELERGVDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQ---IRKI 335 Query 315 VTKTQILCAERRLLALFDD-RKNELAHLA--------------------------THGPE 347 V + + R LF E+ LA + Sbjct 336 VEQMDMPPRGVRQTLLFSATFPREIQRLAADFLANYIFLAVGRVGSSTDLIVQRVEFVLD 395 Query 348 NPKLEMLEKILQRQFSSS---NSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI 404 + K L +L Q + ++F T++ A SL WL + Sbjct 396 SDKRSHLMDLLHAQRENGIQGKQALTLVFVETKRGADSLENWL--------------CIN 441 Query 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 G +S TQ++++ ++ F+ G +LVAT VA GLDIPH VV + L + Sbjct 442 GFPATSIHGDRTQQEREVALKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDD 501 Query 465 MVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLME 504 V GR RA +S A +G+ L R L E E Sbjct 502 YVHRIGRTGRAGKSGLATAFFNDGNTSLARPLAELMQEANQE 543 Score = 53.3 bits (126), Expect = 6e-06, Method: Composition-based stats. Identities = 30/141 (21%), Positives = 52/141 (37%), Gaps = 16/141 (11%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT------RAAAYVAKRHLETVDGAKVVV-----LVN 55 Q I LEG++++ TG+GKT + + +H++ G++ V L Sbjct 186 QRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSP 245 Query 56 RVHLVTQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP 114 L +Q +E ++ V G L R D+L+ T L L Sbjct 246 TRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRELERGVDILVATPGRLNDLL--- 302 Query 115 EEEEHVELTVFSLIVVDECHH 135 E V + + + +DE Sbjct 303 -ERARVSMQMIRFLALDEADR 322 >sp|Q6FP38|DBP1_CANGA ATP-dependent RNA helicase DBP1 OS=Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DBP1 PE=3 SV=1 Length=604 Score = 142 bits (357), Expect = 2e-34, Method: Composition-based stats. Identities = 66/352 (19%), Positives = 119/352 (34%), Gaps = 50/352 (14%) Query 228 PFGDLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR 285 P +L ++ D+ + + +G QQ+ + L R+ L R Sbjct 229 PTRELAIQIFDEAKKYTYRSWVKPYVVYGGAPIGQQMRDMDRGCNLLVATPGRLNDLLER 288 Query 286 RY-----NDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH 340 L++ + R +D + +R+ L E+ H Sbjct 289 GKISLVNVKYLVLDEADRMLDM--GFEPQIRHIVEDCDMPSVNDRQTLMFSATFPREIQH 346 Query 341 LA-----------------THGPENPKLEMLEKI-----LQRQFSSSNSPRGIIFTRTRQ 378 LA T K+ +E L + ++F T++ Sbjct 347 LARDFLKDYIFLSVGRVGSTSENIQQKVLFVEDYDKNSALLDILINEIDGLTLVFVETKR 406 Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT 438 A L +L Q + +A + G TQ +++ + F++G N+LVAT Sbjct 407 MADQLTDFLIVQ------NFKATAIHG--------DRTQAERERALHAFRNGIANILVAT 452 Query 439 SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELIN 496 +VA GLDIP+ V+ Y L T+ V GR RA A S + +EL++ Sbjct 453 AVAARGLDIPNVTNVINYDLPTDIDDYVHRIGRTGRAGNVGVATSFFNSNSMNIAKELMD 512 Query 497 EALETLMEQAVAAVQKMDQAE-YQAKIRDLQQAALTKRAAQAAQRENQRQQF 547 E E V + + + R+ + + R + R+ + Sbjct 513 LLTEANQEVPQFLVNMVQDSMRFGRGGRNSRTGS--NRGRGSNTRDYRHSNK 562 Score = 40.6 bits (93), Expect = 0.055, Method: Composition-based stats. Identities = 25/139 (18%), Positives = 46/139 (33%), Gaps = 23/139 (17%) Query 15 LEGKNIIIWLPTGAGKT--RAAAYVAKRHL-------ETVDGAK-------VVVLVNRVH 58 + ++++ TG+GKT +++ L E + +VL Sbjct 173 TKNRDLMACAQTGSGKTGGFLFPVLSELFLNGPAPLPEHTRHSYMRKCYPSALVLAPTRE 232 Query 59 LVTQHGEEFRRMLDGRWTV--TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE 116 L Q +E ++ W G + + R +LL+ T L L E Sbjct 233 LAIQIFDEAKKYTYRSWVKPYVVYGGAPIGQQMRD-MDRGCNLLVATPGRLNDLL----E 287 Query 117 EEHVELTVFSLIVVDECHH 135 + L +V+DE Sbjct 288 RGKISLVNVKYLVLDEADR 306 >sp|Q6BU54|DED1_DEBHA ATP-dependent RNA helicase DED1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DED1 PE=3 SV=1 Length=630 Score = 142 bits (358), Expect = 2e-34, Method: Composition-based stats. Identities = 60/308 (19%), Positives = 110/308 (36%), Gaps = 47/308 (15%) Query 228 PFGDLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR 285 P +L+ ++ D+ + +G Q+ L L R+ L R Sbjct 247 PTRELVSQIFDEAKKFAYRSWVRPSVVYGGADIGGQIRNLERGCDLLVATPGRLKDLLER 306 Query 286 RYND-----ALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH 340 L++ + R +D + +R+ L E+ Sbjct 307 GRVSLASIKYLVLDEADRMLDM--GFEPQIRHIVQECDMPGVEDRQTLMFSATFPKEIQF 364 Query 341 LA-----------------THGPENPKL-----EMLEKILQRQFSSSNSPRGIIFTRTRQ 378 LA T K+ E + +L S++++ IIFT T++ Sbjct 365 LARDFLKEYIFLSVGRVGSTSENITQKILYVEDEEKKSVLLDLLSANDNGLTIIFTETKR 424 Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT 438 A +L +L Q G ++ +Q ++++ + F+ GT +LVAT Sbjct 425 MADNLADFLYDQ--------------GFPATAIHGDRSQYEREKALAAFKTGTAPILVAT 470 Query 439 SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELIN 496 +VA GLDIP+ + +V Y L ++ V GR RA A ++ + + L++ Sbjct 471 AVAARGLDIPNVSHIVNYDLPSDIDDYVHRIGRTGRAGNIGIATAFFNRNNKNIVKGLVD 530 Query 497 EALETLME 504 E E Sbjct 531 LLTEANQE 538 Score = 46.3 bits (108), Expect = 8e-04, Method: Composition-based stats. Identities = 30/151 (20%), Positives = 57/151 (38%), Gaps = 24/151 (16%) Query 2 ELRSYQWEVIMPALEGKNIIIWLPTGAGKT--RAAAYVAKRHLET----------VDGAK 49 ++ Y ++ G++++ TG+GKT +++ ++ K Sbjct 181 PVQKYSVPIVAA---GRDLMACAQTGSGKTGGFLFPVLSESYMNGPAEVPETAGAFSSHK 237 Query 50 V----VVLVNRVHLVTQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTA 104 V +V+ LV+Q +E ++ W + + G +L R DLL+ T Sbjct 238 VYPTALVMAPTRELVSQIFDEAKKFAYRSWVRPSVVYGGADIGGQIRNLERGCDLLVATP 297 Query 105 ELLQMALTSPEEEEHVELTVFSLIVVDECHH 135 L+ L E V L +V+DE Sbjct 298 GRLKDLL----ERGRVSLASIKYLVLDEADR 324 >sp|P06634|DED1_YEAST ATP-dependent RNA helicase DED1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DED1 PE=1 SV=2 Length=604 Score = 141 bits (356), Expect = 3e-34, Method: Composition-based stats. Identities = 66/331 (20%), Positives = 110/331 (33%), Gaps = 53/331 (16%) Query 211 SQQPCKQYNLCHRR------SQDPFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQV 262 S QP Q + R+ P +L ++ D+ + +G Q+ Sbjct 210 SPQPESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQL 269 Query 263 VKLSEAAALAGLQEQRVYALHLR-----RYNDALLIHDTVRAVDALAALQDFYHREHVTK 317 ++ L R+ L R L++ + R +D + Sbjct 270 REIERGCDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDM--GFEPQIRHIVEDC 327 Query 318 TQILCAERRLLALFDDRKNELAHLA-----------------THGPENPKL-----EMLE 355 ER+ L ++ HLA T K+ + + Sbjct 328 DMTPVGERQTLMFSATFPADIQHLARDFLSDYIFLSVGRVGSTSENITQKVLYVENQDKK 387 Query 356 KILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHM 415 L S+S +IF T++ A L +L Q + RA + G Sbjct 388 SALLDLLSASTDGLTLIFVETKRMADQLTDFLIMQ------NFRATAIHG--------DR 433 Query 416 TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA 474 TQ +++ + F+ G LLVAT+VA GLDIP+ V+ Y L ++ V GR RA Sbjct 434 TQSERERALAAFRSGAATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRA 493 Query 475 DQSVYAF-VATEGSRELKRELINEALETLME 504 + A + + + L E E Sbjct 494 GNTGLATAFFNSENSNIVKGLHEILTEANQE 524 Score = 46.3 bits (108), Expect = 9e-04, Method: Composition-based stats. Identities = 27/137 (20%), Positives = 45/137 (33%), Gaps = 23/137 (17%) Query 17 GKNIIIWLPTGAGKT--RAAAYVAKRHLETVDGAK---------------VVVLVNRVHL 59 G++++ TG+GKT V +T + V++ L Sbjct 179 GRDLMACAQTGSGKTGGFL-FPVLSESFKTGPSPQPESQGSFYQRKAYPTAVIMAPTREL 237 Query 60 VTQHGEEFRRMLDGRWTVT-TLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEE 118 TQ +E ++ W + G + R DLL+ T L L E Sbjct 238 ATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREIERGCDLLVATPGRLNDLL----ERG 293 Query 119 HVELTVFSLIVVDECHH 135 + L +V+DE Sbjct 294 KISLANVKYLVLDEADR 310 >sp|A6ZP47|DED1_YEAS7 ATP-dependent RNA helicase DED1 OS=Saccharomyces cerevisiae (strain YJM789) OX=307796 GN=DED1 PE=3 SV=1 Length=604 Score = 141 bits (356), Expect = 3e-34, Method: Composition-based stats. Identities = 66/331 (20%), Positives = 110/331 (33%), Gaps = 53/331 (16%) Query 211 SQQPCKQYNLCHRR------SQDPFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQV 262 S QP Q + R+ P +L ++ D+ + +G Q+ Sbjct 210 SPQPESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQL 269 Query 263 VKLSEAAALAGLQEQRVYALHLR-----RYNDALLIHDTVRAVDALAALQDFYHREHVTK 317 ++ L R+ L R L++ + R +D + Sbjct 270 REIERGCDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDM--GFEPQIRHIVEDC 327 Query 318 TQILCAERRLLALFDDRKNELAHLA-----------------THGPENPKL-----EMLE 355 ER+ L ++ HLA T K+ + + Sbjct 328 DMTPVGERQTLMFSATFPADIQHLARDFLSDYIFLSVGRVGSTSENITQKVLYVENQDKK 387 Query 356 KILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHM 415 L S+S +IF T++ A L +L Q + RA + G Sbjct 388 SALLDLLSASTDGLTLIFVETKRMADQLTDFLIMQ------NFRATAIHG--------DR 433 Query 416 TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA 474 TQ +++ + F+ G LLVAT+VA GLDIP+ V+ Y L ++ V GR RA Sbjct 434 TQSERERALAAFRSGAATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRA 493 Query 475 DQSVYAF-VATEGSRELKRELINEALETLME 504 + A + + + L E E Sbjct 494 GNTGLATAFFNSENSNIVKGLHEILTEANQE 524 Score = 46.3 bits (108), Expect = 9e-04, Method: Composition-based stats. Identities = 27/137 (20%), Positives = 45/137 (33%), Gaps = 23/137 (17%) Query 17 GKNIIIWLPTGAGKT--RAAAYVAKRHLETVDGAK---------------VVVLVNRVHL 59 G++++ TG+GKT V +T + V++ L Sbjct 179 GRDLMACAQTGSGKTGGFL-FPVLSESFKTGPSPQPESQGSFYQRKAYPTAVIMAPTREL 237 Query 60 VTQHGEEFRRMLDGRWTVT-TLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEE 118 TQ +E ++ W + G + R DLL+ T L L E Sbjct 238 ATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREIERGCDLLVATPGRLNDLL----ERG 293 Query 119 HVELTVFSLIVVDECHH 135 + L +V+DE Sbjct 294 KISLANVKYLVLDEADR 310 >sp|A5E0U9|DBP8_LODEL ATP-dependent RNA helicase DBP8 OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) OX=379508 GN=DBP8 PE=3 SV=1 Length=444 Score = 139 bits (350), Expect = 3e-34, Method: Composition-based stats. Identities = 65/394 (16%), Positives = 139/394 (35%), Gaps = 44/394 (11%) Query 163 VLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCH 222 + GL +P A ++ + L N+ ++ ++ Q E ++P Sbjct 72 IFGLILTPTRELALQIAEQFAALGAL-MNIKVCVVVGGEDFVKQTLELQKKPHFVIATPG 130 Query 223 RRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYAL 282 R + + + + + + + + + + + + ++ ++ Sbjct 131 RLADHILNSGEETVSGLRRIKYLVLDEADRLLSNSFGSDLQRCFTILPPSEKRQTLLFTA 190 Query 283 HLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLA 342 + AL A L F H+ QI + L+ + Sbjct 191 TVTDAVKALKDKP-----RAEGKLPVFLHQVDAGVDQIAIPKT------------LSTMY 233 Query 343 THGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL 402 P K L IL+ ++F +A L L++ + Sbjct 234 VFVPSYVKEAYLTSILK--LPKYEESTAVVFVNRTMTAEVLRRMLRKLE----------- 280 Query 403 LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE 462 +S + M Q ++ + +F+ G +L+AT VA GLDIP +VV + + + Sbjct 281 ---FKVASLHSEMPQTERTNSLHRFKAGAARILIATDVASRGLDIPTVELVVNFDIPADP 337 Query 463 ISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK 521 + GR ARA + A G ++++R +E++ E+ ++ ++ + Sbjct 338 DDFIHRVGRTARAGRKGDAISII-GEKDIER------IESIEERINKKMELLEGVDDDKV 390 Query 522 IRD-LQQAALTKRAAQ-AAQRENQRQQFPVEHVQ 553 I D LQ+A KR A +E+ ++ V + Sbjct 391 INDSLQKATTAKREAMLDMDKESFGERRKVNKKK 424 Score = 55.2 bits (131), Expect = 1e-06, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 57/169 (34%), Gaps = 9/169 (5%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKV-VVLVNRVHLVTQ---HGEEFRRM 70 L+G++ I TG+GKT A A + ++L L Q + Sbjct 38 LKGRDCIGGAKTGSGKTIAFAALMLTQWSQDPFGIFGLILTPTRELALQIAEQFAALGAL 97 Query 71 LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV 130 ++ + V D + L + +I T L + + EE L +V+ Sbjct 98 MNIKVCVVVGGEDFVKQTL--ELQKKPHFVIATPGRLADHILNSGEETVSGLRRIKYLVL 155 Query 131 DECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLD 179 DE ++ + + + L + Q L TA+ + D Sbjct 156 DEADRLLSNSFGSDLQRCFTILPPSEKR---QTLLFTATVTDAVKALKD 201 >sp|A5DQS0|DED1_PICGU ATP-dependent RNA helicase DED1 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DED1 PE=3 SV=3 Length=637 Score = 142 bits (357), Expect = 3e-34, Method: Composition-based stats. Identities = 43/169 (25%), Positives = 74/169 (44%), Gaps = 16/169 (9%) Query 355 EKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH 414 + +L S++++ IIFT T++ A +L +L Q G ++ Sbjct 414 KSVLLDLLSANDNGLTIIFTETKRMADNLADFLYDQ--------------GFPATAIHGD 459 Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR 473 +Q ++++ + F+ GT +LVAT+VA GLDIP+ + VV Y L + V GR R Sbjct 460 RSQYEREKALAAFKSGTAPILVATAVAARGLDIPNVSHVVNYDLPGDIDDYVHRIGRTGR 519 Query 474 ADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK 521 A A +R + + +I E E + + Y +K Sbjct 520 AGNVGIATAFFNRNNRNVVKGMIELLSEANQEVPDFLQKISREGSYGSK 568 Score = 50.6 bits (119), Expect = 5e-05, Method: Composition-based stats. Identities = 30/137 (22%), Positives = 52/137 (38%), Gaps = 21/137 (15%) Query 16 EGKNIIIWLPTGAGKT--RAAAYVAKRHLET----------VDGAKV----VVLVNRVHL 59 G++++ TG+GKT +++ ++ KV +V+ L Sbjct 205 SGRDLMACAQTGSGKTGGFLFPVLSESYMNGPDAVPESQGAFSSHKVHPTALVMAPTREL 264 Query 60 VTQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEE 118 V+Q EE ++ W + G +L R DLL+ T L+ L E Sbjct 265 VSQIFEEAKKFSYRSWVRPCVVYGGADIGTQIRNLDRGCDLLVATPGRLKDLL----ERG 320 Query 119 HVELTVFSLIVVDECHH 135 V L+ +V+DE Sbjct 321 RVSLSNIKYLVLDEADR 337 >sp|Q9M2F9|RH52_ARATH DEAD-box ATP-dependent RNA helicase 52 OS=Arabidopsis thaliana OX=3702 GN=RH52 PE=1 SV=1 Length=646 Score = 141 bits (356), Expect = 4e-34, Method: Composition-based stats. Identities = 70/342 (20%), Positives = 118/342 (35%), Gaps = 69/342 (20%) Query 209 EHSQQPCKQYNLCHRRSQDPFGDLLK---KLMDQIHDHLEMP------ELSRKFGTQMYE 259 +H ++P R P +L +L QIHD ++ +G Sbjct 212 QHIERPR------GVRGVYPLAVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVN 265 Query 260 QQVVKLSEAAALAGLQEQRVYALHLR-----RYNDALLIHDTVRAVDALAALQDFYHREH 314 QQ+ +L + R+ L R + L + + R +D Q R+ Sbjct 266 QQIRELERGVDILVATPGRLNDLLERGRVSLQMVRFLALDEADRMLDMGFEPQ---IRKI 322 Query 315 VTKTQILCAERRLLALFDD-RKNELAHLAT--------------------------HGPE 347 V + + R LF E+ LA+ + Sbjct 323 VQQMDMPPPGVRQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEFVHD 382 Query 348 NPKLEMLEKILQRQFSSSNSPR---GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI 404 + K L +L Q + N + ++F T++ A SL WL + Sbjct 383 SDKRSHLMDLLHAQRENGNQGKQALTLVFVETKKGADSLENWL--------------CIN 428 Query 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 G ++ +Q++++ ++ F+ G +LVAT VA GLDIPH VV + L + Sbjct 429 GFPATTIHGDRSQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDD 488 Query 465 MVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLME 504 V GR RA S A + + + + L E E Sbjct 489 YVHRIGRTGRAGNSGLATAFFNDNNTTMAKPLAELMQEANQE 530 Score = 48.6 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 31/141 (22%), Positives = 49/141 (35%), Gaps = 16/141 (11%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT------RAAAYVAKRHLETVDGAK-----VVVLVN 55 Q I G++++ TG+GKT + + +H+E G + V+L Sbjct 173 QRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSP 232 Query 56 RVHLVTQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP 114 L Q +E R+ V G L R D+L+ T L L Sbjct 233 TRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQIRELERGVDILVATPGRLNDLL--- 289 Query 115 EEEEHVELTVFSLIVVDECHH 135 E V L + + +DE Sbjct 290 -ERGRVSLQMVRFLALDEADR 309 >sp|A3LQ01|DED1_PICST ATP-dependent RNA helicase DED1 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) OX=322104 GN=DED1 PE=3 SV=3 Length=647 Score = 141 bits (355), Expect = 6e-34, Method: Composition-based stats. Identities = 63/309 (20%), Positives = 112/309 (36%), Gaps = 49/309 (16%) Query 228 PFGDLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR 285 P +L+ ++ D+ + +G QQ+ L + L R+ L R Sbjct 259 PTRELVSQIYDEAKKFAYRSWVKPAVVYGGADIGQQIRNLDKGCDLLVATPGRLKDLLER 318 Query 286 RYND-----ALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKN 336 L++ + R +D Q R V + + + R +F Sbjct 319 GRVSLANIKYLVLDEADRMLDMGFEPQ---IRHIVQECDMPDVQDRQTLMFSATFPTDIQ 375 Query 337 ELAHL--------------ATHGPENPKL-----EMLEKILQRQFSSSNSPRGIIFTRTR 377 LA +T K+ E + +L S+ ++ IIFT T+ Sbjct 376 MLARDFLKDYIFLSVGRVGSTSENITQKILYVEDEEKKSVLLDLLSAGDAGLTIIFTETK 435 Query 378 QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA 437 + A +L +L Q G ++ +Q ++++ + F+ G +LVA Sbjct 436 RMADNLADFLYDQ--------------GFPATAIHGDRSQYEREKALAAFKSGAAPILVA 481 Query 438 TSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELI 495 T+VA GLDIP+ V+ Y L ++ V GR RA A ++ + + LI Sbjct 482 TAVAARGLDIPNVAHVINYDLPSDIDDYVHRIGRTGRAGNVGIATAFFNRNNKNVVKGLI 541 Query 496 NEALETLME 504 + E E Sbjct 542 DLLSEANQE 550 Score = 49.8 bits (117), Expect = 6e-05, Method: Composition-based stats. Identities = 27/136 (20%), Positives = 51/136 (38%), Gaps = 21/136 (15%) Query 17 GKNIIIWLPTGAGKT--RAAAYVAKRHLET----------VDGAK----VVVLVNRVHLV 60 G++++ TG+GKT +++ ++ K ++V+ LV Sbjct 205 GRDLMACAQTGSGKTGGFLFPVLSESYINGPAPIAESTGAFSSHKVHPTILVMAPTRELV 264 Query 61 TQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 +Q +E ++ W + G +L + DLL+ T L+ L E Sbjct 265 SQIYDEAKKFAYRSWVKPAVVYGGADIGQQIRNLDKGCDLLVATPGRLKDLL----ERGR 320 Query 120 VELTVFSLIVVDECHH 135 V L +V+DE Sbjct 321 VSLANIKYLVLDEADR 336 >sp|Q9VHP0|DDX3_DROME ATP-dependent RNA helicase bel OS=Drosophila melanogaster OX=7227 GN=bel PE=1 SV=1 Length=798 Score = 141 bits (355), Expect = 1e-33, Method: Composition-based stats. Identities = 62/316 (20%), Positives = 108/316 (34%), Gaps = 56/316 (18%) Query 228 PFGDLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR 285 P +L ++ ++ + +G +Q+ +L L R+ + R Sbjct 386 PTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVATPGRLEDMITR 445 Query 286 RYNDA-----LLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFD----DRKN 336 L++ + R +D Q R V + + +R +F + Sbjct 446 GKVGLENIRFLVLDEADRMLDMGFEPQ---IRRIVEQLNMPPTGQRQTLMFSATFPKQIQ 502 Query 337 ELAHLATHGP-----------------------ENPKLEMLEKILQRQF---SSSNSPRG 370 ELA E K L +L + Sbjct 503 ELASDFLSNYIFLAVGRVGSTSENITQTILWVYEPDKRSYLLDLLSSIRDGPEYTKDSLT 562 Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 +IF T++ A SL +L Q +S TQ++++E ++ F+ G Sbjct 563 LIFVETKKGADSLEEFLYQCN--------------HPVTSIHGDRTQKEREEALRCFRSG 608 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSR 488 +LVAT+VA GLDIPH V+ + L ++ V GR R A E +R Sbjct 609 DCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNEKNR 668 Query 489 ELKRELINEALETLME 504 + +L+ +ET E Sbjct 669 NICSDLLELLIETKQE 684 Score = 53.3 bits (126), Expect = 6e-06, Method: Composition-based stats. Identities = 57/305 (19%), Positives = 97/305 (32%), Gaps = 43/305 (14%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYV-----------------AKRHLETVDGAK 49 Q I + G++++ TG+GKT AA V +++ Sbjct 322 QKHAIPIIINGRDLMACAQTGSGKT-AAFLVPILNQMYELGHVPPPQSTRQYSRRKQYPL 380 Query 50 VVVLVNRVHLVTQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQ 108 +VL L TQ EE ++ L G L R L++ T L+ Sbjct 381 GLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVATPGRLE 440 Query 109 MALTSPEEEEHVELTVFSLIVVDECHH---THKDTVYNVIMSQYLELKLQRAQPLPQVLG 165 +T + V L +V+DE + I+ Q + Q L Sbjct 441 DMITRGK----VGLENIRFLVLDEADRMLDMGFEPQIRRIVEQLNMPPTGQRQT----LM 492 Query 166 LTAS-PGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRR 224 +A+ P D N++ L + S Q +P K+ L Sbjct 493 FSATFPKQIQELASDFLSNYIF-----LAVGRVGSTSENITQTILWVYEPDKRSYLLDLL 547 Query 225 SQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEA-AALAGLQEQRVYALH 283 S G K D L + + K G E+ + + + ++ G + Q+ Sbjct 548 SSIRDGPEYTK------DSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEA 601 Query 284 LRRYN 288 LR + Sbjct 602 LRCFR 606 >sp|Q1DHB2|PRP5_COCIM Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Coccidioides immitis (strain RS) OX=246410 GN=PRP5 PE=3 SV=1 Length=1197 Score = 141 bits (356), Expect = 1e-33, Method: Composition-based stats. Identities = 68/368 (18%), Positives = 128/368 (35%), Gaps = 47/368 (13%) Query 212 QQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAA 269 Q+P + P +L ++ + L+ L +G + Q+ +L A Sbjct 624 QRPLENMEGPVGLIMTPTRELATQIHKECKPFLKALNLRAVCAYGGAPIKDQIAELKRGA 683 Query 270 ALAGLQEQRVYAL--------HLRRYNDALLIHDTVRAVD---------ALAALQDFYH- 311 + R+ L R +++ + R D ++ ++ Sbjct 684 EIIVCTPGRMIDLLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIISNIRPSRQT 743 Query 312 ----------REHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQ 361 E + + + ++ E+ + PEN K L ++L Sbjct 744 VLFSATFPRNMEALARKTLTKPVEIIVGGRSVVAQEITQIVEVRPENTKFVRLLELLGNL 803 Query 362 FSSSN--SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRD 419 +S N R +IF +++A LL L ++ G S Q D Sbjct 804 YSDDNNEDARALIFVDRQEAADGLLRDLMRK--------------GYPCMSIHGGKDQVD 849 Query 420 QQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSV 478 + I F+ G +L+ATSVA GLD+ +V+ Y + V GR RA + Sbjct 850 RDSTIDDFKAGIFPVLIATSVAARGLDVKQLKLVINYDAPNHLEDYVHRAGRTGRAGNTG 909 Query 479 YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA 538 A +E I +AL+ + AVQKM + + ++A+ + + Sbjct 910 TAVTFLTEEQERYSVDIAKALKQSGQSVPEAVQKMVDSFLEKVKSGKEKASASGFGGKGL 969 Query 539 QRENQRQQ 546 +R +Q + Sbjct 970 ERLDQERD 977 Score = 59.8 bits (143), Expect = 8e-08, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 54/138 (39%), Gaps = 12/138 (9%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYV-AKRH------LETVDGAKVVVLVNRVHL 59 Q + I + G+++I TG+GKT A + RH LE ++G +++ L Sbjct 586 QSQAIPAIMSGRDVIGVAKTGSGKT-IAFLLPMFRHIKDQRPLENMEGPVGLIMTPTREL 644 Query 60 VTQHGEEFRRMLDG--RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE 117 TQ +E + L V G L R ++++CT + L + Sbjct 645 ATQIHKECKPFLKALNLRAVCAYGGAPIKDQI-AELKRGAEIIVCTPGRMIDLLAANSGR 703 Query 118 EHVELTVFSLIVVDECHH 135 L + +V+DE Sbjct 704 -VTNLRRVTYVVLDEADR 720 >sp|Q6Z4K6|RH52B_ORYSJ DEAD-box ATP-dependent RNA helicase 52B OS=Oryza sativa subsp. japonica OX=39947 GN=PL10B PE=2 SV=1 Length=638 Score = 140 bits (352), Expect = 1e-33, Method: Composition-based stats. Identities = 62/294 (21%), Positives = 98/294 (33%), Gaps = 54/294 (18%) Query 248 ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND-----ALLIHDTVRAVDA 302 ++ +G QQ+ +L + R+ L R L + + R +D Sbjct 277 KVVVAYGGAPITQQLRELERGVEILVATPGRLMDLLERARVSLQMIKYLALDEADRMLDM 336 Query 303 LAALQDFYHREHVTKTQILCAERRLLALFDD-----------------------RKNELA 339 Q R+ V + + R LF R Sbjct 337 GFEPQ---IRKIVEQMDMPPRGERQTMLFSATFPKEIQRMASDFLADYIFLAVGRVGSST 393 Query 340 HLATHGPENP----KLEMLEKILQRQFSSSNSPR---GIIFTRTRQSAHSLLLWLQQQQG 392 L E K L +L Q ++ + ++F T++ A +L WL Sbjct 394 DLIVQRVEFVLDADKRSYLMDLLHAQRANGTHGKQALTLVFVETKRGADALENWLYNN-- 451 Query 393 LQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNV 452 G +S TQ++++ ++ F+ G +LVAT VA GLDIPH Sbjct 452 ------------GFPATSIHGDRTQQEREYALRSFKSGATPILVATDVAARGLDIPHVAH 499 Query 453 VVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLME 504 V+ + L + V GR RA +S A E + L R L E E Sbjct 500 VINFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNESNTPLARPLSELMQEANQE 553 Score = 49.0 bits (115), Expect = 1e-04, Method: Composition-based stats. Identities = 30/144 (21%), Positives = 52/144 (36%), Gaps = 22/144 (15%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAY---VAKRHLETVDGAK----------VVVL 53 Q I ++ G++++ TG+GKT AA+ + + + + ++L Sbjct 196 QRYAIPISIAGRDLMACAQTGSGKT--AAFCFPIISGIMRSRPPPRSRGSRTAYPLALIL 253 Query 54 VNRVHLVTQHGEEFRRML--DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMAL 111 L Q EE R+ G V G + L R ++L+ T L L Sbjct 254 SPTRELSVQIHEEARKFAYQTGVKVVVAYGGAPITQQLR-ELERGVEILVATPGRLMDLL 312 Query 112 TSPEEEEHVELTVFSLIVVDECHH 135 E V L + + +DE Sbjct 313 ----ERARVSLQMIKYLALDEADR 332 >sp|P44586|DEAD_HAEIN ATP-dependent RNA helicase DeaD OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=deaD PE=3 SV=1 Length=613 Score = 139 bits (351), Expect = 1e-33, Method: Composition-based stats. Identities = 66/323 (20%), Positives = 129/323 (40%), Gaps = 44/323 (14%) Query 237 MDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRY--------- 287 + + + + +G Q Y+ Q+ L + A + R+ H+RR Sbjct 93 CELFVKYAQGTRIVTLYGGQRYDIQLRALKQGAQVVVGTPGRILD-HIRRGTLNLSELRF 151 Query 288 -----NDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLA 342 D +L + V+ + A H+ + + RR+ F + E+ + Sbjct 152 IVLDEADEMLRMGFIDDVETVMAELPENHQTALFSATMPEPIRRITKRFMNDPQEVK-IK 210 Query 343 THGPENPKLE---------MLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGL 393 + P ++ + L R + IIF RT+ + L++ Sbjct 211 VNNENAPDIDQSCWYVHGVRKNEALLRFLEVEDFDAAIIFARTKTGTLDITELLEKN--- 267 Query 394 QTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV 453 G +++ + MTQ+ +++ + + ++G+L+++VAT VA G+DI ++V Sbjct 268 -----------GFRSAALNGDMTQQLREQTLDRLRNGSLDIVVATDVAARGIDIERISLV 316 Query 454 VRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQK 512 V Y + + S V GR RA +S A + E +R L N +E LM++ + V+ Sbjct 317 VNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRE--RRLLRN--IEHLMKKGINEVEL 372 Query 513 MDQAEYQAKIRDLQQAALTKRAA 535 + Q R A +TK+ Sbjct 373 PNHLVLQECRRKKFVAKITKQLE 395 Score = 52.5 bits (124), Expect = 9e-06, Method: Composition-based stats. Identities = 23/123 (19%), Positives = 45/123 (37%), Gaps = 9/123 (7%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGEEFR---RM 70 L G +++ TG+GKT A A ++ + +++V+ L Q + + Sbjct 40 LNGNDVLGMAQTGSGKTAAFALPLLAQIDPSEKHPQMLVMAPTRELAIQVADACELFVKY 99 Query 71 LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV 130 G VT G L + +++ T + + + L+ IV+ Sbjct 100 AQGTRIVTLYGGQRYDIQLR-ALKQGAQVVVGTPGRILDHI----RRGTLNLSELRFIVL 154 Query 131 DEC 133 DE Sbjct 155 DEA 157 >sp|P19109|DDX17_DROME ATP-dependent RNA helicase p62 OS=Drosophila melanogaster OX=7227 GN=Rm62 PE=1 SV=3 Length=719 Score = 140 bits (353), Expect = 2e-33, Method: Composition-based stats. Identities = 41/190 (22%), Positives = 81/190 (43%), Gaps = 17/190 (9%) Query 333 DRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSP-RGIIFTRTRQSAHSLLLWLQQQQ 391 + + + E K E L+ +L + +S SP + IIF T++ +L+ +++ Sbjct 495 SANHNIRQVVDVCDEFSKEEKLKTLLSDIYDTSESPGKIIIFVETKRRVDNLVRFIR--- 551 Query 392 GLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN 451 + +R + G +Q ++ V+++F+ G N+LVAT VA GLD+ Sbjct 552 ---SFGVRCGAIHG--------DKSQSERDFVLREFRSGKSNILVATDVAARGLDVDGIK 600 Query 452 VVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAA 509 V+ + N + GR R++ +F T+ + + + L++ E E A Sbjct 601 YVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQAKALVDVLREANQEINPAL 660 Query 510 VQKMDQAEYQ 519 + Y Sbjct 661 ENLARNSRYD 670 Score = 50.6 bits (119), Expect = 4e-05, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 46/130 (35%), Gaps = 13/130 (10%) Query 14 ALEGKNIIIWLPTGAGKTRAAAYVAKRH------LETVDGAKVVVLVNRVHLVTQHGEEF 67 A+ G N + TG+GKT A H L+ DG +VL L Q ++ Sbjct 315 AMSGSNFVGIAKTGSGKTLGYILPAIVHINNQQPLQRGDGPIALVLAPTREL-AQQIQQV 373 Query 68 RRMLDGRWTV--TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF 125 V T + G L R +++I T L L++ L Sbjct 374 ATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGCEIVIATPGRLIDFLSA----GSTNLKRC 429 Query 126 SLIVVDECHH 135 + +V+DE Sbjct 430 TYLVLDEADR 439 >sp|Q89AF9|DEAD_BUCBP ATP-dependent RNA helicase DeaD OS=Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) OX=224915 GN=deaD PE=3 SV=1 Length=602 Score = 139 bits (349), Expect = 2e-33, Method: Composition-based stats. Identities = 62/339 (18%), Positives = 128/339 (38%), Gaps = 42/339 (12%) Query 207 LQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLS 266 L + + + + + + L + +G Q Y+ Q+ L Sbjct 64 LLHNIKLDVRVPQILVLTPTRELAVQVAEAFSNFSKKLIGVHVLALYGGQRYDLQLKSLR 123 Query 267 EAAALAGLQEQRVYALHLRR----YNDALLIHDTVRAVDALAALQDF---------YHRE 313 + + R+ RR N L+ D + + ++D H+ Sbjct 124 KGPQIIVGTPGRLLDHLKRRTLSLSNLHSLVLDEADEMLRMGFIEDVETIMTEIPDRHQT 183 Query 314 HVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLE--------MLEKILQRQFSSS 365 + + A RR+ F E+ + ++ P ++ L R + Sbjct 184 ALFSATMPEAIRRISRRFMKNPKEI-RIQSNITTRPDIQQSYWMVYGKKTDALIRFLEAE 242 Query 366 NSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQ 425 + IIF RT+ + + L++ G +++ + M Q +++ ++ Sbjct 243 DFSATIIFVRTKNATLEVSEVLERY--------------GYNSAALNGDMNQSLREQTLE 288 Query 426 KFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVAT 484 K +DG L++L+AT VA GLD+ + V+ Y + + S V GR RA + A + Sbjct 289 KLKDGRLDILIATDVAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRKGKALLFV 348 Query 485 EGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIR 523 E +R L N +E M +++ V + ++++ +K R Sbjct 349 ENRE--RRLLRN--IERAMNISISEV-NLPKSDFLSKRR 382 Score = 57.5 bits (137), Expect = 3e-07, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 47/122 (39%), Gaps = 7/122 (6%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRHLET-VDGAKVVVLVNRVHLVTQHGEEFRRMLDG 73 ++GK+++ TG+GKT A A +++ V +++VL L Q E F Sbjct 41 IKGKDVLGMAQTGSGKTAAFALPLLHNIKLDVRVPQILVLTPTRELAVQVAEAFSNFSKK 100 Query 74 --RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVD 131 V L G L + +++ T L L + L+ +V+D Sbjct 101 LIGVHVLALYGGQRYDLQLKSLRKGPQIIVGTPGRLLDHLKRRT----LSLSNLHSLVLD 156 Query 132 EC 133 E Sbjct 157 EA 158 >sp|Q5A4E2|DED1_CANAL ATP-dependent RNA helicase DED1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DED1 PE=3 SV=1 Length=672 Score = 139 bits (351), Expect = 3e-33, Method: Composition-based stats. Identities = 57/309 (18%), Positives = 111/309 (36%), Gaps = 49/309 (16%) Query 228 PFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR 285 P +L+ ++ ++ + +G QQ+ + L R+ L R Sbjct 277 PTRELVSQIYEESKKFSYRSWVRACVVYGGADIGQQMRNMDRGCDLLVATPGRLKDLLDR 336 Query 286 RYND-----ALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH 340 L++ + R +D Q Y V + + + R +F Sbjct 337 GKVSLANIRYLVLDEADRMLDMGFEPQIRYI---VEECDMPAVKDRQTLMFSATFPRDIQ 393 Query 341 L------------------ATHGPENPKLEMLEK-----ILQRQFSSSNSPRGIIFTRTR 377 + +T K+ +E ++ S++ + I+FT T+ Sbjct 394 MLARDFLKDYVFLSVGRVGSTSENITQKILYVEDDEKKSVILDLLSANENGLTIVFTETK 453 Query 378 QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA 437 + A +L +L Q G ++ +Q ++++ + F++G +LVA Sbjct 454 RMADNLADYLYDQ--------------GFPATAIHGDRSQYEREKALAAFKNGAAPILVA 499 Query 438 TSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELI 495 T+VA GLDIP+ + V+ Y L ++ V GR RA A ++ + + LI Sbjct 500 TAVAARGLDIPNVSHVINYDLPSDIDDYVHRIGRTGRAGNVGIATAFFNRNNKNVVKGLI 559 Query 496 NEALETLME 504 E E Sbjct 560 ELLSEANQE 568 Score = 50.2 bits (118), Expect = 5e-05, Method: Composition-based stats. Identities = 28/151 (19%), Positives = 57/151 (38%), Gaps = 24/151 (16%) Query 2 ELRSYQWEVIMPALEGKNIIIWLPTGAGKT--RAAAYVAKRHLET----------VDGAK 49 ++ Y ++ G++++ TG+GKT +++ +++ K Sbjct 211 PVQKYSVPIVAA---GRDLMACAQTGSGKTGGFLFPVLSESYMKGPAPVPESNGAFSSHK 267 Query 50 ----VVVLVNRVHLVTQHGEEFRRMLDGRWTVT-TLSGDMGPRAGFGHLARCHDLLICTA 104 ++V+ LV+Q EE ++ W + G ++ R DLL+ T Sbjct 268 VYPTILVMAPTRELVSQIYEESKKFSYRSWVRACVVYGGADIGQQMRNMDRGCDLLVATP 327 Query 105 ELLQMALTSPEEEEHVELTVFSLIVVDECHH 135 L+ L + V L +V+DE Sbjct 328 GRLKDLL----DRGKVSLANIRYLVLDEADR 354 >sp|Q0CIQ3|RRP3_ASPTN ATP-dependent rRNA helicase rrp3 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=rrp3 PE=3 SV=2 Length=445 Score = 136 bits (343), Expect = 3e-33, Method: Composition-based stats. Identities = 80/414 (19%), Positives = 135/414 (33%), Gaps = 52/414 (13%) Query 164 LGLTA-SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLC- 221 LG TA +P + ++ L T + P LQ +P + ++L Sbjct 46 LGYTAPTPIQERCIPIALEGRDLIGLAE---TGSGKTAAFVLPMLQALMDKPQQFHSLIL 102 Query 222 --HRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRV 279 R ++ L +I + G Q + L + + R+ Sbjct 103 APTRELAQQIAHTVEALGARISVRCTLL-----IGGMDMISQAIALGKKPHVIVATPGRL 157 Query 280 YALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERR---LLALFDDRKN 336 HL L +D L D + K L +R+ A + Sbjct 158 LD-HLENTKGFSLRTLKYLVLDEADRLLDLDFGPILDKLLRLLPKRKTYLFSATMSSKVE 216 Query 337 ELAHLATHGPE----NPKLEMLEKILQRQFSSSNSPR---------------GIIFTRTR 377 L + P + K + K+LQ + + GIIFTRT Sbjct 217 SLQRASLSDPVRVSVSTKNQTASKLLQSYLFIPHKFKDFYLVYLLNERAGQMGIIFTRTV 276 Query 378 QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA 437 L + L+ +G ++Q + + KF+ + NLL+A Sbjct 277 HETQRLSIMLRN--------------LGFPAIPIHGQLSQSARLASLNKFRARSRNLLIA 322 Query 438 TSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELIN 496 T VA GLDIP + V+ Y L + + + GR ARA +S AF I Sbjct 323 TDVAARGLDIPAVDYVLNYDLPQDSKTYIHRVGRTARAGKSGIAFSFVTQYEVELWLRIE 382 Query 497 EALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVE 550 +AL +E+ +K + + ++ D Q+ A + R + Sbjct 383 DALGKKVEEYKP--EKDEVMIFAERVNDAQRVAALTMRDMQDKDNKGRGPRNRK 434 Score = 71.8 bits (174), Expect = 6e-12, Method: Composition-based stats. Identities = 65/379 (17%), Positives = 118/379 (31%), Gaps = 31/379 (8%) Query 14 ALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK-VVVLVNRVHLVTQHGEEFRRMLD 72 ALEG+++I TG+GKT A + L ++L L Q L Sbjct 62 ALEGRDLIGLAETGSGKTAAFVLPMLQALMDKPQQFHSLILAPTREL-AQQIAHTVEALG 120 Query 73 GRWTV--TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV 130 R +V T L G M + L + +++ T L L + + L +V+ Sbjct 121 ARISVRCTLLIGGMDMISQAIALGKKPHVIVATPGRLLDHLENTKG---FSLRTLKYLVL 177 Query 131 DECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCA 190 DE D + I+ + L L +R L +A+ + S +++ +++ Sbjct 178 DEADRLL-DLDFGPILDKLLRLLPKRKTYL-----FSATMSSKVESLQRASLSDPVRV-- 229 Query 191 NLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELS 250 Q LQ + P K + + + + + + + Sbjct 230 ----SVSTKNQTASKLLQSYLFIPHKFKDFYLVYLLNERAGQMGIIFTRTVHETQRLSIM 285 Query 251 RKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAAL---Q 307 + +LS++A LA L + R + +L D + AVD + Q Sbjct 286 LRNLGFPAIPIHGQLSQSARLASLNKFRARSRNLLIATDVAARGLDIPAVDYVLNYDLPQ 345 Query 308 DFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNS 367 D H + + F + L K+E Sbjct 346 DSKTYIHRVGRTARAGKSGIAFSFVTQYEVELWLRIEDALGKKVEE---------YKPEK 396 Query 368 PRGIIFTRTRQSAHSLLLW 386 +IF A + Sbjct 397 DEVMIFAERVNDAQRVAAL 415 >sp|Q62167|DDX3X_MOUSE ATP-dependent RNA helicase DDX3X OS=Mus musculus OX=10090 GN=Ddx3x PE=1 SV=3 Length=662 Score = 138 bits (348), Expect = 5e-33, Method: Composition-based stats. Identities = 59/283 (21%), Positives = 104/283 (37%), Gaps = 48/283 (17%) Query 253 FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND-----ALLIHDTVRAVDALAALQ 307 +G QQ+ L L R+ + R L++ + R +D Q Sbjct 301 YGGAEIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 360 Query 308 DFYHREHVTKTQILCAERRLLALFDD-RKNELAHLA-----------------THGPENP 349 R V + + R +F E+ LA T Sbjct 361 ---IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQ 417 Query 350 KLEMLEKILQRQF------SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLL 403 K+ +E+I +R F ++ ++F T++ A SL +L + Sbjct 418 KVVWVEEIDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE------------- 464 Query 404 IGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI 463 G +S +QRD++E + +F+ G +LVAT+VA GLDI + V+ + L ++ Sbjct 465 -GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIE 523 Query 464 SMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLME 504 V GR R A E + + ++L++ +E E Sbjct 524 EYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQE 566 Score = 47.5 bits (111), Expect = 4e-04, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 46/149 (31%), Gaps = 24/149 (16%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT---------RA-------AAYVAKRHLETVDGAK- 49 Q I E ++++ TG+GKT + A K + + Sbjct 207 QKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYADGPGEALRAMKENGRYGRRKQY 266 Query 50 --VVVLVNRVHLVTQHGEEFRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAEL 106 +VL L Q EE R+ R + G L R LL+ T Sbjct 267 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGAEIGQQIRDLERGCHLLVATPGR 326 Query 107 LQMALTSPEEEEHVELTVFSLIVVDECHH 135 L + E + L +V+DE Sbjct 327 LVDMM----ERGKIGLDFCKYLVLDEADR 351 >sp|Q2H1Q8|RRP3_CHAGB ATP-dependent rRNA helicase RRP3 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=RRP3 PE=3 SV=1 Length=493 Score = 136 bits (342), Expect = 7e-33, Method: Composition-based stats. Identities = 75/364 (21%), Positives = 138/364 (38%), Gaps = 56/364 (15%) Query 207 LQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLS 266 L P ++ +S + G L+ I L+M + + G + + VV + Sbjct 134 LFALVLAPTRELAAQIAQSFEALGSLISLRCALILGGLDMVQQAIALGKKPH---VVVAT 190 Query 267 EAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVD-ALAALQDFYHREHVTKTQILCAER 325 L L++ + ++L RY L++ + R +D + D + L ER Sbjct 191 PGRLLDHLEKTKGFSLRNLRY---LVMDEADRLLDMDFGPILDKILK-------FLPRER 240 Query 326 R---LLALFDDRKNELAHLATHGPE-----NPKLEMLEKILQRQFSSSNSPR-------- 369 R A + L P + K + + ++Q ++ + Sbjct 241 RTFLFSATMSSKVESLQRACLRDPLKVSISSSKYQTVSTLVQNYVFIPHTHKDTYLIYLC 300 Query 370 -------GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE 422 IIFTRT + + L+ +G G ++Q + Sbjct 301 NEFAGQTIIIFTRTVIETQRIAILLRT--------------LGMGAIPLHGGLSQSARLG 346 Query 423 VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF 481 + KF+ G+ ++LVAT VA GLDIP+ + V+ L + + V GR ARA +S +A Sbjct 347 ALNKFRAGSRDILVATDVAARGLDIPNVDCVLNLDLPGDSKTYVHRVGRTARAGRSGHAI 406 Query 482 -VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR 540 T+ EL + L E + ++K D ++ ++ + Q+ A T+ A R Sbjct 407 SFVTQYDLELWLRIEAALGTKLTEYS---LEKDDVMVFRPRVEEAQRIAKTEIKALMDDR 463 Query 541 ENQR 544 + Sbjct 464 GKKG 467 Score = 66.0 bits (159), Expect = 6e-10, Method: Composition-based stats. Identities = 58/389 (15%), Positives = 118/389 (30%), Gaps = 37/389 (10%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT-RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q E I AL+ ++II TG+GKT A + + L+ +VL L Q + Sbjct 92 QQESIPLALQDRDIIGLAETGSGKTGAFALPILQALLDKPQPLFALVLAPTRELAAQIAQ 151 Query 66 EFRRMLDGRW-TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 F + + G + L + +++ T L L + L Sbjct 152 SFEALGSLISLRCALILGGLDMVQQAIALGKKPHVVVATPGRLLDHLEKTKG---FSLRN 208 Query 125 FSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINH 184 +V+DE D + I+ + L+ + + +A+ + S + Sbjct 209 LRYLVMDEADRLL-DMDFGPILDKILKFLPRER----RTFLFSATMSSKVESLQRACLRD 263 Query 185 VLQLCANLDTWCIMSPQNCCPQ--LQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHD 242 L++ ++ + + H+ + LC + F + + Sbjct 264 PLKV--SISSSKYQTVSTLVQNYVFIPHTHKDTYLIYLC-----NEFAGQTIIIFTRTVI 316 Query 243 HLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDA 302 + + + LS++A L L + R + + D + VD Sbjct 317 ETQRIAILLRTLGMGAIPLHGGLSQSARLGALNKFRAGSRDILVATDVAARGLDIPNVDC 376 Query 303 LAAL------QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEK 356 + L + + HR T F + + L KL Sbjct 377 VLNLDLPGDSKTYVHRVGRTAR---AGRSGHAISFVTQYDLELWLRIEAALGTKL----- 428 Query 357 ILQRQFSSSNSPRGIIFTRTRQSAHSLLL 385 ++S ++F + A + Sbjct 429 ---TEYSLEKDD-VMVFRPRVEEAQRIAK 453 >sp|A5DZE6|DED1_LODEL ATP-dependent RNA helicase DED1 OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) OX=379508 GN=DED1 PE=3 SV=1 Length=664 Score = 138 bits (347), Expect = 7e-33, Method: Composition-based stats. Identities = 55/309 (18%), Positives = 111/309 (36%), Gaps = 49/309 (16%) Query 228 PFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR 285 P +L+ ++ D+ + +G Q+ +L L R+ L R Sbjct 266 PTRELVSQIYDESKKFAYRSWVRPCVVYGGADIGNQIRQLDRGCDLLVATPGRLKDLLER 325 Query 286 RYND-----ALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH 340 L++ + R +D Q R V + + + R +F Sbjct 326 GRVSLANIKYLVLDEADRMLDMGFEPQ---IRHIVQECDMPDVQDRQTLMFSATFPRDIQ 382 Query 341 L------------------ATHGPENPKL-----EMLEKILQRQFSSSNSPRGIIFTRTR 377 + +T K+ E + ++ ++++ I+FT T+ Sbjct 383 MLARDFLKDYIFLSVGRVGSTSENITQKVLYVEDEEKKSVILDLLNANSEGLTIVFTETK 442 Query 378 QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA 437 + A +L +L Q G ++ +Q ++++ + F+ G +LVA Sbjct 443 RMADNLADFLYDQ--------------GFPATAIHGDRSQYEREKALAAFKSGQAPILVA 488 Query 438 TSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELI 495 T+VA GLDIP+ + V+ Y L ++ V GR RA A ++ + + ++ Sbjct 489 TAVAARGLDIPNVSHVINYDLPSDIDDYVHRIGRTGRAGNVGIATAFFNRNNKNIVKGML 548 Query 496 NEALETLME 504 + E E Sbjct 549 DLLTEANQE 557 Score = 48.6 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 55/151 (36%), Gaps = 24/151 (16%) Query 2 ELRSYQWEVIMPALEGKNIIIWLPTGAGKT--RAAAYVAKRHLET----------VDGAK 49 ++ Y ++ G++++ TG+GKT +++ ++ K Sbjct 200 PVQKYSVPIVAA---GRDLMACAQTGSGKTGGFLFPVLSESYMNGPAPIPESTGAFSSHK 256 Query 50 ----VVVLVNRVHLVTQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTA 104 ++V+ LV+Q +E ++ W + G L R DLL+ T Sbjct 257 VYPTILVMAPTRELVSQIYDESKKFAYRSWVRPCVVYGGADIGNQIRQLDRGCDLLVATP 316 Query 105 ELLQMALTSPEEEEHVELTVFSLIVVDECHH 135 L+ L E V L +V+DE Sbjct 317 GRLKDLL----ERGRVSLANIKYLVLDEADR 343 >sp|Q2U2J6|PRP5_ASPOR Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=prp5 PE=3 SV=1 Length=1186 Score = 139 bits (350), Expect = 8e-33, Method: Composition-based stats. Identities = 67/368 (18%), Positives = 125/368 (34%), Gaps = 47/368 (13%) Query 212 QQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAA 269 Q+P + P +L ++ L+ L +G + Q+ L A Sbjct 619 QRPLENMEGPVGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIADLKRGA 678 Query 270 ALAGLQEQRVYAL--------HLRRYNDALLIHDTVRAVD---------ALAALQDFYH- 311 + R+ L R +++ + R D LA ++ Sbjct 679 EIIVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILANVRPDKQT 738 Query 312 ----------REHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQ 361 E + + + ++ E+ + E+ K L ++L Sbjct 739 VLFSATFPRNMEALARKTLNKPVEIVVGGRSVVAPEITQIVEVRSEDKKFIRLLELLGNL 798 Query 362 FS--SSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRD 419 +S + R +IF ++ A +LL L ++ G S Q D Sbjct 799 YSTDENEDARALIFVERQEGADTLLRELMRK--------------GYPCMSIHGGKDQID 844 Query 420 QQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSV 478 + I+ F+ G +L+ATSVA GLD+ +VV Y + V GR RA + Sbjct 845 RDSTIEDFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTG 904 Query 479 YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA 538 A +E I +AL+ + VQKM + + ++A+ + + Sbjct 905 TAVTFLTEDQERYSVDIAKALKQSGQSVPEPVQKMVDSFLEKVKAGKEKASASGFGGKGL 964 Query 539 QRENQRQQ 546 +R +Q + Sbjct 965 ERLDQERD 972 Score = 60.6 bits (145), Expect = 4e-08, Method: Composition-based stats. Identities = 54/327 (17%), Positives = 108/327 (33%), Gaps = 35/327 (11%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYV-AKRH------LETVDGAKVVVLVNRVHL 59 Q + I + G+++I TG+GKT A + RH LE ++G +++ L Sbjct 581 QAQAIPAIMSGRDVIGVAKTGSGKT-IAFLIPMFRHIKDQRPLENMEGPVGLIMTPTREL 639 Query 60 VTQHGEEFRRMLDG--RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE 117 TQ ++ + L V G L R ++++CT + L + Sbjct 640 ATQIHKDCKPFLKALNLRAVCAYGGAPIKDQI-ADLKRGAEIIVCTPGRMIDLLAANAGR 698 Query 118 EHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQ-----PLPQVLGLTASPGT 172 L + +V+DE +M ++ + P+ + A Sbjct 699 -VTNLRRVTYVVLDEADRMFDMGFEPQVMKILANVRPDKQTVLFSATFPR--NMEALARK 755 Query 173 GGASKLDGAINHVLQLCANL-DTWCIMSPQNCCPQLQEH------SQQPCKQYNLCHRRS 225 ++ + + + + S +L E + + L Sbjct 756 TLNKPVEIVVGGRSVVAPEITQIVEVRSEDKKFIRLLELLGNLYSTDENEDARALIFVER 815 Query 226 QDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR 285 Q+ LL++LM + + + + + + +A L V A L Sbjct 816 QEGADTLLRELMRKGYPCMSIHGGKDQIDRDSTIE----DFKAGIFPVLIATSVAARGLD 871 Query 286 RYNDALLIHDTVRAVDALAALQDFYHR 312 L+++ DA L+D+ HR Sbjct 872 VKQLKLVVN-----YDAPNHLEDYVHR 893 >sp|A6R3L3|DED1_AJECN ATP-dependent RNA helicase DED1 OS=Ajellomyces capsulatus (strain NAm1 / WU24) OX=2059318 GN=DED1 PE=3 SV=1 Length=694 Score = 138 bits (347), Expect = 8e-33, Method: Composition-based stats. Identities = 61/315 (19%), Positives = 111/315 (35%), Gaps = 59/315 (19%) Query 228 PFGDLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR 285 P +L+ ++ D+ L + +G Q+ +L + + R+ + R Sbjct 294 PTRELVSQIYDEARKFCYRTALHPRVVYGGAEMGNQLRQLDQGCNVLVATPGRLVDMMER 353 Query 286 -----RYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALF------DDR 334 + L++ + R +D Q R V + + R +F D + Sbjct 354 GRISLAHIQYLVLDEADRMLDMGFEPQ---IRRIVQGSDMPDKHMRQTLMFSATFPPDIQ 410 Query 335 KNELAHLATHGPENP----------------------KLEMLEKILQRQFSSSNSPRGII 372 K L H + K L IL S ++ ++ Sbjct 411 KLAEEFLKDHIFLSVGRVGSTSENITQRIVECESDKDKDSALLDIL----CSDSTGLTLV 466 Query 373 FTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTL 432 F T++ A L +L + T + TQR+++ ++ F+ G Sbjct 467 FVETKRQADMLSDFLLDHRLPAT--------------AIHGDRTQRERERALELFRTGRC 512 Query 433 NLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSV--YAFVATEGSRE 489 +LVAT+VA GLDIP+ V+ Y L V GR RA + AF + + + Sbjct 513 PILVATAVAARGLDIPNVTHVINYDLPNEIDDYVHRIGRTGRAGNTGISTAFFSRSKNFK 572 Query 490 LKRELINEALETLME 504 + R L++ + E Sbjct 573 IARSLVDLLKDANQE 587 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 25/140 (18%), Positives = 50/140 (36%), Gaps = 25/140 (18%) Query 15 LEGKNIIIWLPTGAGKT--RAAAYVAKRHLETVDGAK--------------VVVLVNRVH 58 + G++++ TG+GKT +++ A+ ++L Sbjct 238 MGGRDLMACAQTGSGKTGGFLFPILSQSLHTRGPEAEAARGLGRQQKAYPTALILGPTRE 297 Query 59 LVTQHGEEFRRM---LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE 115 LV+Q +E R+ V +MG + L + ++L+ T L + Sbjct 298 LVSQIYDEARKFCYRTALHPRVVYGGAEMGNQLR--QLDQGCNVLVATPGRLVDMM---- 351 Query 116 EEEHVELTVFSLIVVDECHH 135 E + L +V+DE Sbjct 352 ERGRISLAHIQYLVLDEADR 371 >sp|Q3BNH8|RHLB_XANE5 ATP-dependent RNA helicase RhlB OS=Xanthomonas euvesicatoria pv. vesicatoria (strain 85-10) OX=316273 GN=rhlB PE=3 SV=1 Length=573 Score = 137 bits (344), Expect = 8e-33, Method: Composition-based stats. Identities = 68/399 (17%), Positives = 123/399 (31%), Gaps = 58/399 (15%) Query 147 SQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQ 206 ++ P ++ S G + + V ++ Sbjct 4 KPLTDVTFSSFDLHPALIAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAF 63 Query 207 LQEHSQQPCKQYNLCHRRSQDPFGDLL---KKLMDQIH------DHLEMPELSRKFGTQM 257 L + + L R+ +DP +L ++L QIH + +G Sbjct 64 LVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVD 123 Query 258 YEQQVVKLSEAAALAGLQEQRVYALHLRRYN------DALLIHDTVRAVDALAALQDFYH 311 Y++Q L + + R+ + + ++ + R D L ++D Sbjct 124 YDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFD-LGFIKDIRF 182 Query 312 REHVTKTQILCAERRLLALFDDRKNELAHLATHGPE-------------------NPKLE 352 + A R ELA+ + PE P E Sbjct 183 LLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETESITAARVRQRIYFPSDE 242 Query 353 MLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQS 412 + +L S S R ++F T+ + L++ G S Sbjct 243 EKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLER--------------HGYRVGVLS 288 Query 413 THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR- 471 + Q+ ++ ++ +FQ G L +LVAT VA GL I V Y L + V GR Sbjct 289 GDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRT 348 Query 472 ARADQSV--YAFVATEGSRELKRELINEALETLMEQAVA 508 AR + +F + L +E +EQ + Sbjct 349 ARLGEEGDAISFACERYAMSLP------DIEAYIEQKIP 381 Score = 51.0 bits (120), Expect = 3e-05, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 12/119 (10%) Query 26 TGAGKT---RAAA---YVAKRHL--ETVDGAKVVVLVNRVHLVTQ-HGEEFRRMLDGRWT 76 TG GKT A + + L + + ++L L Q H + + D Sbjct 55 TGTGKTLAFLVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLR 114 Query 77 VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH 135 + G + L + D++I T L + ++ + V L + V+DE Sbjct 115 FALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYV---KQHKVVSLHACEICVLDEADR 170 >sp|Q8P4D4|RHLB_XANCP ATP-dependent RNA helicase RhlB OS=Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25) OX=190485 GN=rhlB PE=3 SV=1 Length=573 Score = 137 bits (344), Expect = 8e-33, Method: Composition-based stats. Identities = 69/399 (17%), Positives = 123/399 (31%), Gaps = 58/399 (15%) Query 147 SQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQ 206 +L P ++ S G + + V ++ Sbjct 4 KPLTDLTFSSFDLHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAF 63 Query 207 LQEHSQQPCKQYNLCHRRSQDPFGDLL---KKLMDQIH------DHLEMPELSRKFGTQM 257 L + + L R+ +DP +L ++L QIH + +G Sbjct 64 LVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVD 123 Query 258 YEQQVVKLSEAAALAGLQEQRVYALHLRRYN------DALLIHDTVRAVDALAALQDFYH 311 Y++Q L + + R+ + + ++ + R D L ++D Sbjct 124 YDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFD-LGFIKDIRF 182 Query 312 REHVTKTQILCAERRLLALFDDRKNELAHLATHGPE-------------------NPKLE 352 + A R ELA+ + PE P E Sbjct 183 LLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPSDE 242 Query 353 MLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQS 412 + +L S S R ++F T+ + L++ G S Sbjct 243 EKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLER--------------HGYRVGVLS 288 Query 413 THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR- 471 + Q+ ++ ++ +FQ G L +LVAT VA GL I V Y L + V GR Sbjct 289 GDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRT 348 Query 472 ARADQSV--YAFVATEGSRELKRELINEALETLMEQAVA 508 AR + +F + L +E +EQ + Sbjct 349 ARLGEEGDAISFACERYAMSLP------DIEAYIEQKIP 381 Score = 51.0 bits (120), Expect = 3e-05, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 12/119 (10%) Query 26 TGAGKT---RAAA---YVAKRHL--ETVDGAKVVVLVNRVHLVTQ-HGEEFRRMLDGRWT 76 TG GKT A + + L + + ++L L Q H + + D Sbjct 55 TGTGKTLAFLVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLR 114 Query 77 VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH 135 + G + L + D++I T L + ++ + V L + V+DE Sbjct 115 FALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYV---KQHKVVSLHACEICVLDEADR 170 >sp|B0RWT6|RHLB_XANCB ATP-dependent RNA helicase RhlB OS=Xanthomonas campestris pv. campestris (strain B100) OX=509169 GN=rhlB PE=3 SV=1 Length=573 Score = 137 bits (344), Expect = 8e-33, Method: Composition-based stats. Identities = 69/399 (17%), Positives = 123/399 (31%), Gaps = 58/399 (15%) Query 147 SQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQ 206 +L P ++ S G + + V ++ Sbjct 4 KPLTDLTFSSFDLHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAF 63 Query 207 LQEHSQQPCKQYNLCHRRSQDPFGDLL---KKLMDQIH------DHLEMPELSRKFGTQM 257 L + + L R+ +DP +L ++L QIH + +G Sbjct 64 LVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVD 123 Query 258 YEQQVVKLSEAAALAGLQEQRVYALHLRRYN------DALLIHDTVRAVDALAALQDFYH 311 Y++Q L + + R+ + + ++ + R D L ++D Sbjct 124 YDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFD-LGFIKDIRF 182 Query 312 REHVTKTQILCAERRLLALFDDRKNELAHLATHGPE-------------------NPKLE 352 + A R ELA+ + PE P E Sbjct 183 LLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPSDE 242 Query 353 MLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQS 412 + +L S S R ++F T+ + L++ G S Sbjct 243 EKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLER--------------HGYRVGVLS 288 Query 413 THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR- 471 + Q+ ++ ++ +FQ G L +LVAT VA GL I V Y L + V GR Sbjct 289 GDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRT 348 Query 472 ARADQSV--YAFVATEGSRELKRELINEALETLMEQAVA 508 AR + +F + L +E +EQ + Sbjct 349 ARLGEEGDAISFACERYAMSLP------DIEAYIEQKIP 381 Score = 51.0 bits (120), Expect = 3e-05, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 12/119 (10%) Query 26 TGAGKT---RAAA---YVAKRHL--ETVDGAKVVVLVNRVHLVTQ-HGEEFRRMLDGRWT 76 TG GKT A + + L + + ++L L Q H + + D Sbjct 55 TGTGKTLAFLVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLR 114 Query 77 VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH 135 + G + L + D++I T L + ++ + V L + V+DE Sbjct 115 FALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYV---KQHKVVSLHACEICVLDEADR 170 >sp|Q4UPY5|RHLB_XANC8 ATP-dependent RNA helicase RhlB OS=Xanthomonas campestris pv. campestris (strain 8004) OX=314565 GN=rhlB PE=3 SV=1 Length=573 Score = 137 bits (344), Expect = 8e-33, Method: Composition-based stats. Identities = 69/399 (17%), Positives = 123/399 (31%), Gaps = 58/399 (15%) Query 147 SQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQ 206 +L P ++ S G + + V ++ Sbjct 4 KPLTDLTFSSFDLHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAF 63 Query 207 LQEHSQQPCKQYNLCHRRSQDPFGDLL---KKLMDQIH------DHLEMPELSRKFGTQM 257 L + + L R+ +DP +L ++L QIH + +G Sbjct 64 LVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVD 123 Query 258 YEQQVVKLSEAAALAGLQEQRVYALHLRRYN------DALLIHDTVRAVDALAALQDFYH 311 Y++Q L + + R+ + + ++ + R D L ++D Sbjct 124 YDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFD-LGFIKDIRF 182 Query 312 REHVTKTQILCAERRLLALFDDRKNELAHLATHGPE-------------------NPKLE 352 + A R ELA+ + PE P E Sbjct 183 LLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPSDE 242 Query 353 MLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQS 412 + +L S S R ++F T+ + L++ G S Sbjct 243 EKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLER--------------HGYRVGVLS 288 Query 413 THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR- 471 + Q+ ++ ++ +FQ G L +LVAT VA GL I V Y L + V GR Sbjct 289 GDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRT 348 Query 472 ARADQSV--YAFVATEGSRELKRELINEALETLMEQAVA 508 AR + +F + L +E +EQ + Sbjct 349 ARLGEEGDAISFACERYAMSLP------DIEAYIEQKIP 381 Score = 51.0 bits (120), Expect = 3e-05, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 12/119 (10%) Query 26 TGAGKT---RAAA---YVAKRHL--ETVDGAKVVVLVNRVHLVTQ-HGEEFRRMLDGRWT 76 TG GKT A + + L + + ++L L Q H + + D Sbjct 55 TGTGKTLAFLVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLR 114 Query 77 VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH 135 + G + L + D++I T L + ++ + V L + V+DE Sbjct 115 FALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYV---KQHKVVSLHACEICVLDEADR 170 >sp|Q59PR3|DBP8_CANAL ATP-dependent RNA helicase DBP8 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DBP8 PE=3 SV=1 Length=440 Score = 135 bits (339), Expect = 9e-33, Method: Composition-based stats. Identities = 54/394 (14%), Positives = 130/394 (33%), Gaps = 45/394 (11%) Query 163 VLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCH 222 + GL +P A ++ + N+ ++ ++ Q ++P Sbjct 70 IFGLILTPTRELALQIAEQFAALGA-NMNIKVAVVVGGEDFVQQTLALQRKPHFVIATPG 128 Query 223 RRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYAL 282 R + + + + + + + + + + + + + ++ ++ Sbjct 129 RLADHILNSGEETISGLRRVKYLVLDEADRLLSNSFGSDLQRCFDVLPTSDKRQTLLFTA 188 Query 283 HLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLA 342 + AL + F H + + ++ +F Sbjct 189 TITDAVRALKEKPPTPGKPPV-----FMHEVETVDKVAIPSTLQISYVFV---------- 233 Query 343 THGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL 402 P K L IL +IF +A L L++ +D R Sbjct 234 ---PSYVKEAYLNSIL--HLEQFKDSTAVIFVNRTTTAEVLRRMLRK------LDFRVAS 282 Query 403 LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE 462 L + M Q ++ + +F+ G +L+AT VA GLDIP +V+ + + + Sbjct 283 L--------HSEMPQSERTNSLHRFKAGAARILIATDVASRGLDIPTVELVINFDIPADP 334 Query 463 ISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK 521 + GR ARA + A G +++ R ++++ E+ ++ ++ Sbjct 335 DDFIHRVGRTARAGRKGDAVSII-GEKDIDR------IQSIEERINKKMELLEDVNDDNV 387 Query 522 IRDLQQAALTKRAA--QAAQRENQRQQFPVEHVQ 553 I++ A + +EN ++ + + Sbjct 388 IKESLSATSVAKRESLMEMDKENFGERKKINRKK 421 Score = 51.7 bits (122), Expect = 1e-05, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 59/169 (35%), Gaps = 9/169 (5%) Query 15 LEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQ---HGEEFRRM 70 L+G + I TG+GKT A AA + + E G ++L L Q Sbjct 36 LKGHDCIGGAKTGSGKTIAFAAPMLTQWSEDPFGIFGLILTPTRELALQIAEQFAALGAN 95 Query 71 LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV 130 ++ + V D + L R +I T L + + EE L +V+ Sbjct 96 MNIKVAVVVGGEDFVQQTL--ALQRKPHFVIATPGRLADHILNSGEETISGLRRVKYLVL 153 Query 131 DECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLD 179 DE ++ + + + L + Q L TA+ + + Sbjct 154 DEADRLLSNSFGSDLQRCFDVLPTSDKR---QTLLFTATITDAVRALKE 199 >sp|Q55804|CRHR_SYNY3 RNA helicase CrhR OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa) OX=1111708 GN=crhR PE=1 SV=1 Length=492 Score = 136 bits (341), Expect = 1e-32, Method: Composition-based stats. Identities = 64/327 (20%), Positives = 128/327 (39%), Gaps = 44/327 (13%) Query 228 PFGDLLKKLMDQIHD--HLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYAL--- 282 P +L +++ + + D H + +G Q E+Q+ L + RV L Sbjct 82 PTRELAQQVAEAMKDFSHERRLFILNVYGGQSIERQIRSLERGVQIVVGTPGRVIDLIDR 141 Query 283 -HLRRYNDALLIHDTVRAVDALAALQD---FYHREHVTK------TQILCAERRLLALFD 332 L+ ++ D + ++ + D + T+ + + L+ F Sbjct 142 KKLKLETIQWVVLDEADEMLSMGFIDDVKTILRKTPPTRQTACFSATMPREIKELVNQFL 201 Query 333 DRKNELAHLATHGPENPKLEMLEKI---------LQRQFSSSNSPRGIIFTRTRQSAHSL 383 + + T + L + LQ + IIF RT+Q+A L Sbjct 202 NDPALVTVKQTQSTPTRIEQQLYHVPRGWSKAKALQPILEMEDPESAIIFVRTKQTAADL 261 Query 384 LLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEE 443 LQ+ G +++Q ++ ++ +F+DG + L+VAT +A Sbjct 262 TSRLQEA--------------GHSVDEYHGNLSQSQRERLVHRFRDGKIKLVVATDIAAR 307 Query 444 GLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETL 502 GLD+ + + VV + L N + + GR RA ++ A E + R L+ ++E Sbjct 308 GLDVNNLSHVVNFDLPDNAETYIHRIGRTGRAGKTGKAIALVE---PIDRRLL-RSIENR 363 Query 503 MEQAVAAVQKMDQAEYQAK-IRDLQQA 528 ++Q + ++++ +AK I LQ+ Sbjct 364 LKQQIEVCTIPNRSQVEAKRIEKLQEQ 390 Score = 49.0 bits (115), Expect = 1e-04, Method: Composition-based stats. Identities = 25/128 (20%), Positives = 48/128 (38%), Gaps = 5/128 (4%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEE 66 Q E I L G++++ TG GKT A A ++ + ++L L Q E Sbjct 34 QTEAIPLLLSGRDMLAQSQTGTGKTAAFALPLMDRIDPEGDLQALILTPTRELAQQVAEA 93 Query 67 FRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF 125 + + R + + G L R +++ T + + + ++L Sbjct 94 MKDFSHERRLFILNVYGGQSIERQIRSLERGVQIVVGTPGRVIDLIDRKK----LKLETI 149 Query 126 SLIVVDEC 133 +V+DE Sbjct 150 QWVVLDEA 157 >sp|Q2UNB7|RRP3_ASPOR ATP-dependent rRNA helicase rrp3 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=rrp3 PE=3 SV=1 Length=472 Score = 135 bits (340), Expect = 1e-32, Method: Composition-based stats. Identities = 68/382 (18%), Positives = 127/382 (33%), Gaps = 48/382 (13%) Query 193 DTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSR- 251 +T + P LQ +P + L P +L ++ + Sbjct 97 ETGSGKTAAFALPILQALMDKPSSFFGLVLA----PTRELAYQISQAFEGLGSTISVRST 152 Query 252 -KFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFY 310 G Q + L + + R+ HL L + +D L D Sbjct 153 VLVGGMDMVSQSIALGKKPHIIVATPGRLLD-HLENTKGFSLRNLKYLVMDEADRLLDMD 211 Query 311 HREHVTKTQILCAERRLLALFD----DRKNELAHLATHGPE-----NPKLEMLEKILQRQ 361 + K + R LF + L + P + K + + + Q Sbjct 212 FGPILDKILKVLPRERRTYLFSATMSSKVESLQRASLQNPLRVAVSSSKFQTVSTLQQSY 271 Query 362 FSSSNSPR---------------GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA 406 + + IIF RT L +L+ L+G Sbjct 272 IFIPHKHKDLYLVYLLNEFVGQSCIIFCRTVHETQRLSFFLR--------------LLGF 317 Query 407 GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV 466 G ++Q + + KF+ + ++LVAT VA GLDIP +VV+ + L + + + Sbjct 318 GAIPLHGQLSQSARLGALGKFRSRSRDILVATDVAARGLDIPSVDVVLNFDLPGDSKTFI 377 Query 467 QARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDL 525 GR ARA +S A I AL + + A +K + ++ + Sbjct 378 HRIGRTARAGKSGVAISFATQYDVEAWLRIEGALGKKLPEYPA--EKDEVMVLAERVSEA 435 Query 526 QQAALTKRAAQAAQRENQRQQF 547 Q++A+ + ++ ++ ++F Sbjct 436 QRSAILEMKNYDEKKGSRGKKF 457 Score = 70.6 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 67/420 (16%), Positives = 126/420 (30%), Gaps = 34/420 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKV-VVLVNRVHLVTQHGE 65 Q E I AL+G+++I TG+GKT A A + L + +VL L Q + Sbjct 79 QAEAIPLALQGRDLIGLAETGSGKTAAFALPILQALMDKPSSFFGLVLAPTRELAYQISQ 138 Query 66 EFRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 F + T L G M + L + +++ T L L + + L Sbjct 139 AFEGLGSTISVRSTVLVGGMDMVSQSIALGKKPHIIVATPGRLLDHLENTKG---FSLRN 195 Query 125 FSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINH 184 +V+DE D + I+ + L++ + + +A+ + S ++ + Sbjct 196 LKYLVMDEADRLL-DMDFGPILDKILKVLPRERRTYL----FSATMSSKVESLQRASLQN 250 Query 185 VLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHL 244 L++ + + +S H + L + G +H+ Sbjct 251 PLRVAVSSSKFQTVSTLQQSYIFIPHKHKDLYLVYL----LNEFVGQSCIIFCRTVHETQ 306 Query 245 EMPELSRKFG-----TQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRA 299 + R G Q +L + A + + D V Sbjct 307 RLSFFLRLLGFGAIPLHGQLSQSARLGALGKFRSRSRDILVATDVAARGLDIPSVDVVLN 366 Query 300 VDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQ 359 D + F HR T + + F + + A L G KL Sbjct 367 FDLPGDSKTFIHRIGRTAR---AGKSGVAISFATQYDVEAWLRIEGALGKKLPE------ 417 Query 360 RQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRD 419 + ++ A L+ + + R + A M Q + Sbjct 418 ---YPAEKDEVMVLAERVSEAQR-SAILEMKNYDEKKGSRGKKF--AKGKRSREDMDQEE 471 >sp|Q501J6|DDX17_MOUSE Probable ATP-dependent RNA helicase DDX17 OS=Mus musculus OX=10090 GN=Ddx17 PE=1 SV=1 Length=650 Score = 137 bits (345), Expect = 1e-32, Method: Composition-based stats. Identities = 73/416 (18%), Positives = 136/416 (33%), Gaps = 69/416 (17%) Query 134 HHTHK-DTVYNVIM-SQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCAN 191 HH + V +V+M + E + Q P L L+ G A G Sbjct 95 HHANFPQYVMDVLMDQHFTEPTPIQCQGFP--LALSGRDMVGIAQTGSG----------- 141 Query 192 LDTWCIMSPQNCCPQLQEHSQQP-CKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELS 250 + P + + QP ++ + P +L +++ D+ + L Sbjct 142 ------KTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLK 195 Query 251 RK--FGTQMYEQQVVKLSEAAALAGLQEQRVYAL------HLRRYNDALLIHDTVRAVD- 301 +G Q+ L + R+ +LRR L++ + R +D Sbjct 196 STCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRC-TYLVLDEADRMLDM 254 Query 302 ----ALAALQDFYHREHVTKTQILCAERRLLALFDDR----------------KNELAHL 341 + + D + T + + L +D + + + Sbjct 255 GFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQI 314 Query 342 ATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQ 401 E+ K L + L + + + IIF T++ L +++ Sbjct 315 VDVCMESEKDHKLIQ-LMEEIMAEKENKTIIFVETKRRCDDLTRRMRRD----------- 362 Query 402 LLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN 461 G +Q ++ V+ +F+ G +L+AT VA GLD+ V+ Y + Sbjct 363 ---GWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNS 419 Query 462 EISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQ 515 V GR AR+ A+ T G+ + RELI E +Q +D Sbjct 420 SEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKLMQLVDH 475 Score = 47.1 bits (110), Expect = 5e-04, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 49/136 (36%), Gaps = 11/136 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA----AAYVAKR--HLETVDGAKVVVLVNRVHLV 60 Q + AL G++++ TG+GKT A A +LE DG +VL L Sbjct 119 QCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELA 178 Query 61 TQHGEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 Q + R T + G L R ++ I T L L S + Sbjct 179 QQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTN-- 236 Query 120 VELTVFSLIVVDECHH 135 L + +V+DE Sbjct 237 --LRRCTYLVLDEADR 250 >sp|Q8PFZ3|RHLB_XANAC ATP-dependent RNA helicase RhlB OS=Xanthomonas axonopodis pv. citri (strain 306) OX=190486 GN=rhlB PE=3 SV=1 Length=571 Score = 136 bits (343), Expect = 1e-32, Method: Composition-based stats. Identities = 68/399 (17%), Positives = 123/399 (31%), Gaps = 58/399 (15%) Query 147 SQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQ 206 ++ P ++ S G + + V ++ Sbjct 4 KPLTDVTFSSFDLHPALIAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAF 63 Query 207 LQEHSQQPCKQYNLCHRRSQDPFGDLL---KKLMDQIH------DHLEMPELSRKFGTQM 257 L + + L R+ +DP +L ++L QIH + +G Sbjct 64 LVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVD 123 Query 258 YEQQVVKLSEAAALAGLQEQRVYALHLRRYN------DALLIHDTVRAVDALAALQDFYH 311 Y++Q L + + R+ + + ++ + R D L ++D Sbjct 124 YDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFD-LGFIKDIRF 182 Query 312 REHVTKTQILCAERRLLALFDDRKNELAHLATHGPE-------------------NPKLE 352 + A R ELA+ + PE P E Sbjct 183 LLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETESITAARVRQRIYFPSDE 242 Query 353 MLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQS 412 + +L S S R ++F T+ + L++ G S Sbjct 243 EKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLER--------------HGYRVGVLS 288 Query 413 THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR- 471 + Q+ ++ ++ +FQ G L +LVAT VA GL I V Y L + V GR Sbjct 289 GDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRT 348 Query 472 ARADQSV--YAFVATEGSRELKRELINEALETLMEQAVA 508 AR + +F + L +E +EQ + Sbjct 349 ARLGEEGDAISFACERYAMSLP------DIEAYIEQKIP 381 Score = 50.6 bits (119), Expect = 4e-05, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 12/119 (10%) Query 26 TGAGKT---RAAA---YVAKRHL--ETVDGAKVVVLVNRVHLVTQ-HGEEFRRMLDGRWT 76 TG GKT A + + L + + ++L L Q H + + D Sbjct 55 TGTGKTLAFLVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLR 114 Query 77 VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH 135 + G + L + D++I T L + ++ + V L + V+DE Sbjct 115 FALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYV---KQHKVVSLHACEICVLDEADR 170 >sp|P24346|DDX3_XENLA Putative ATP-dependent RNA helicase an3 OS=Xenopus laevis OX=8355 GN=an3 PE=2 SV=1 Length=697 Score = 138 bits (346), Expect = 1e-32, Method: Composition-based stats. Identities = 54/283 (19%), Positives = 103/283 (36%), Gaps = 48/283 (17%) Query 253 FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND-----ALLIHDTVRAVDALAALQ 307 +G QQ+ L L R+ + R L++ + R +D Q Sbjct 342 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 401 Query 308 DFYHREHVTKTQILCAERRLLALFDDRKNELAHL------------------ATHGPENP 349 R V + + R +F + + +T Sbjct 402 ---IRRIVEQDTMPPKGVRQTMMFSATFPKEIQILARDFLDEYIFLAVGRVGSTSENITQ 458 Query 350 KLEMLEKILQRQF------SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLL 403 K+ +E++ +R F ++ ++F T++ A +L +L + Sbjct 459 KVVWVEEMDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYHE------------- 505 Query 404 IGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI 463 G +S +QRD++E + +F+ G +LVAT+VA GLDI + V+ + L ++ Sbjct 506 -GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIE 564 Query 464 SMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLME 504 V GR R A E + + ++L++ +E E Sbjct 565 EYVHRIGRTGRVGNLGLATSFFNEKNINITKDLLDLLVEAKQE 607 Score = 48.6 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 32/150 (21%), Positives = 48/150 (32%), Gaps = 26/150 (17%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYV--------------AKRHLETVDGAK--- 49 Q I +E ++++ TG+GKT AA + K E + Sbjct 248 QKHAIPIIIEKRDLMACAQTGSGKT-AAFLLPILSQIYADGPGDAMKHLQENGRYGRRKQ 306 Query 50 ---VVVLVNRVHLVTQHGEEFRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAE 105 +VL L Q EE R+ R + G L R LL+ T Sbjct 307 FPLSLVLAPTRELAVQIYEEARKFAYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPG 366 Query 106 LLQMALTSPEEEEHVELTVFSLIVVDECHH 135 L + E + L +V+DE Sbjct 367 RLVDMM----ERGKIGLDFCKYLVLDEADR 392 >sp|Q81IT9|CSHA_BACCR DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711) OX=226900 GN=cshA PE=2 SV=2 Length=533 Score = 136 bits (342), Expect = 1e-32, Method: Composition-based stats. Identities = 66/324 (20%), Positives = 119/324 (37%), Gaps = 53/324 (16%) Query 253 FGTQMYEQQVVKLSEAAALAGLQEQRVYA----LHLRRYNDALLIHDTVRAVDALAALQD 308 +G Q +Q+ L + + R+ LR N ++ D + + ++D Sbjct 105 YGGQDINRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIED 164 Query 309 F---------YHREHVTKTQILCAERRLLALFDDRKNELA------------HLATHGPE 347 H+ + + RR+ F + E Sbjct 165 IEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQE 224 Query 348 NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG 407 K ++L ++L Q + I+F RT++ L L L G Sbjct 225 KKKFDVLTRLLDIQ----SPELAIVFGRTKRRVDELSEALN--------------LRGYA 266 Query 408 NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 +TQ + V++KF++G++ +LVAT VA GLDI V + + + S V Sbjct 267 AEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVH 326 Query 468 ARGR-ARADQSVYA--FVATEGSRELK------RELINEALETLMEQAVAAVQKMDQAEY 518 GR RA + A FV S +LK + ++ +++A+ Q++ + Sbjct 327 RIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKL 386 Query 519 QAKIRDLQQAALTKRAAQAAQREN 542 Q+ I + + A KR A+ EN Sbjct 387 QSTIEN-ENLAYYKRIAEEMLEEN 409 Score = 50.6 bits (119), Expect = 4e-05, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 51/129 (40%), Gaps = 6/129 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLET-VDGAKVVVLVNRVHLVTQHGE 65 Q E I AL+GK+II TG GKT A ++T + + +V+ L Q GE Sbjct 29 QAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGE 88 Query 66 EFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 E ++ R + + G L + +++ T + + + L Sbjct 89 ELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINRKT----LRLQN 144 Query 125 FSLIVVDEC 133 +V+DE Sbjct 145 VETVVLDEA 153 >sp|Q6CXW0|DBP8_KLULA ATP-dependent RNA helicase DBP8 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=DBP8 PE=3 SV=1 Length=435 Score = 134 bits (337), Expect = 1e-32, Method: Composition-based stats. Identities = 52/213 (24%), Positives = 92/213 (43%), Gaps = 23/213 (11%) Query 346 PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 PE+ K L +IL + +S IIF +A L L+ ++D+R L Sbjct 237 PEHVKESYLYQILTSEKYVKSS--CIIFVNRTVTAEILRRTLK------SLDVRVTSL-- 286 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465 + M Q+++ +Q+F+ +L+AT VA GLDIP +VV Y + N + Sbjct 287 ------HSQMPQQERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTF 340 Query 466 VQARGR-ARADQSV--YAFVATEGSRELK--RELINEALETLMEQAVAAVQKMDQAEYQA 520 + GR ARA + FV + + ++ E IN+ +E + AV + + A Sbjct 341 IHRAGRTARAGRHGESLCFVTEKDIQRVEAIEERINKKMEEFTDVGDTAVIRKSLTKVTA 400 Query 521 KIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQ 553 R+ A + +R+ Q+++ + Sbjct 401 AKRESLMA--MDKEGFGERRKLQKRKNESKEKT 431 Score = 54.4 bits (129), Expect = 2e-06, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 48/135 (36%), Gaps = 9/135 (7%) Query 7 QWEVIMPA-----LEGKNIIIWLPTGAGKT--RAAAYVAKRHLETVDGAKVVVLVNRVHL 59 Q I A L+G++ I TG+GKT AA + K E G +VL L Sbjct 26 QPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTK-WSEDPQGMFGIVLTPTREL 84 Query 60 VTQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEE 118 Q E+F V + G L + +I T L + + E+ Sbjct 85 AMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPHFIIATPGRLAHHVLNSGEDT 144 Query 119 HVELTVFSLIVVDEC 133 L +V+DE Sbjct 145 IGGLKRVKFLVLDEA 159 >sp|A1D373|PRP5_NEOFI Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=prp5 PE=3 SV=1 Length=1193 Score = 138 bits (348), Expect = 1e-32, Method: Composition-based stats. Identities = 67/368 (18%), Positives = 127/368 (35%), Gaps = 47/368 (13%) Query 212 QQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAA 269 Q+P + P +L ++ L+ L +G + Q+ +L A Sbjct 622 QRPLENMEGPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAELKRGA 681 Query 270 ALAGLQEQRVYAL--------HLRRYNDALLIHDTVRAVD---------ALAALQDFYH- 311 + R+ L R +++ + R D +A ++ Sbjct 682 EIVVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRPDRQT 741 Query 312 ----------REHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQ 361 E + + + ++ E+ + E+ K L +IL Sbjct 742 VLFSATFPRNMEALARKSLTKPIEIVVGGKSVVAPEITQIVEVRNEDTKFVRLLEILGNL 801 Query 362 FSS--SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRD 419 +S + R +IF +++A +LL L ++ G S Q D Sbjct 802 YSDDANEDARALIFVDRQEAADTLLRELMRK--------------GYPCMSIHGGKDQID 847 Query 420 QQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSV 478 + I+ F+ G +L+ATSVA GLD+ +VV Y + V GR RA + Sbjct 848 RDSTIEDFKAGIFPILIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTG 907 Query 479 YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA 538 A +E I +AL ++ VQKM + + ++A+ + + Sbjct 908 TAVTFLTEEQERYSVDIAKALRQSGQKVPEPVQKMVDSFLEKVKAGKEKASASGFGGKGL 967 Query 539 QRENQRQQ 546 +R +Q + Sbjct 968 ERLDQERD 975 Score = 61.4 bits (147), Expect = 3e-08, Method: Composition-based stats. Identities = 61/388 (16%), Positives = 123/388 (32%), Gaps = 42/388 (11%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYV-AKRH------LETVDGAKVVVLVNRVHL 59 Q + I + G+++I TG+GKT A + RH LE ++G +++ L Sbjct 584 QSQAIPAIMSGRDVIGVAKTGSGKT-IAFLIPMFRHIRDQRPLENMEGPIGLIMTPTREL 642 Query 60 VTQHGEEFRRMLDG--RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE 117 TQ ++ + L V G L R ++++CT + L + Sbjct 643 ATQIHKDCKPFLKALNLRAVCAYGGAPIKDQI-AELKRGAEIVVCTPGRMIDLLAANAGR 701 Query 118 EHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS-PGTGGAS 176 L + +V+DE +M ++ R L +A+ P A Sbjct 702 -VTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRPDRQTVL-----FSATFPRNMEAL 755 Query 177 KLDGAINHVL-----QLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYN---------LCH 222 + + + I+ +N + + Y+ L Sbjct 756 ARKSLTKPIEIVVGGKSVVAPEITQIVEVRNEDTKFVRLLEILGNLYSDDANEDARALIF 815 Query 223 RRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYAL 282 Q+ LL++LM + + + + + + +A L V A Sbjct 816 VDRQEAADTLLRELMRKGYPCMSIHGGKDQIDRDSTIE----DFKAGIFPILIATSVAAR 871 Query 283 HLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLA 342 L L+++ DA L+D+ HR T + + + Sbjct 872 GLDVKQLKLVVN-----YDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEEQERYSVDIAK 926 Query 343 THGPENPKL-EMLEKILQRQFSSSNSPR 369 K+ E ++K++ + + Sbjct 927 ALRQSGQKVPEPVQKMVDSFLEKVKAGK 954 >sp|A1CQA9|PRP5_ASPCL Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=prp5 PE=3 SV=1 Length=1192 Score = 138 bits (348), Expect = 1e-32, Method: Composition-based stats. Identities = 68/368 (18%), Positives = 126/368 (34%), Gaps = 47/368 (13%) Query 212 QQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAA 269 Q+P P +L ++ L+ L +G + Q+ L A Sbjct 622 QRPLDNMEGPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIADLKRGA 681 Query 270 ALAGLQEQRVYAL--------HLRRYNDALLIHDTVRAVD---------ALAALQDFYH- 311 + R+ L R +++ + R D +A ++ Sbjct 682 EIVVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRPDRQT 741 Query 312 ----------REHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQ 361 E + + + ++ E+ + E+ K L +IL Sbjct 742 VLFSATFPRNMEALARKALTKPIEIIVGGRSVVAPEITQIVEVRNEDTKFVRLLEILGNL 801 Query 362 FSS--SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRD 419 +S + R +IF +++A +LL L ++ G S Q D Sbjct 802 YSDDANEDARSLIFVERQEAADALLRELMRK--------------GYPCMSIHGGKDQID 847 Query 420 QQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSV 478 + I+ F+ G +L+ATSVA GLD+ +VV Y + V GR RA + Sbjct 848 RDSTIEDFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTG 907 Query 479 YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA 538 A +E I +AL+ +Q VQKM + + ++A+ + + Sbjct 908 TAVTFLTEEQERYSVDIAKALKQSGQQVPEPVQKMVDSFLEKVKAGKEKASASGFGGKGL 967 Query 539 QRENQRQQ 546 +R +Q + Sbjct 968 ERLDQERD 975 Score = 56.3 bits (134), Expect = 9e-07, Method: Composition-based stats. Identities = 56/330 (17%), Positives = 109/330 (33%), Gaps = 41/330 (12%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYV-AKRH------LETVDGAKVVVLVNRVHL 59 Q + I + G+++I TG+GKT A + RH L+ ++G +++ L Sbjct 584 QSQAIPAIMSGRDVIGVAKTGSGKT-VAFLIPMFRHIKDQRPLDNMEGPIGLIMTPTREL 642 Query 60 VTQHGEEFRRMLDG--RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE 117 TQ ++ + L V G L R ++++CT + L + Sbjct 643 ATQIHKDCKPFLKALNLRAVCAYGGAPIKDQI-ADLKRGAEIVVCTPGRMIDLLAANAGR 701 Query 118 EHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS-PGTGGAS 176 L + +V+DE +M ++ R L +A+ P A Sbjct 702 -VTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRPDRQTVL-----FSATFPRNMEAL 755 Query 177 KLDGAINHVLQLCA-----NLDTWCIMSPQNCCPQLQEHSQQPCKQY---------NLCH 222 + + + I+ +N + + Y +L Sbjct 756 ARKALTKPIEIIVGGRSVVAPEITQIVEVRNEDTKFVRLLEILGNLYSDDANEDARSLIF 815 Query 223 RRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYAL 282 Q+ LL++LM + + + + + + +A L V A Sbjct 816 VERQEAADALLRELMRKGYPCMSIHGGKDQIDRDSTIE----DFKAGIFPVLIATSVAAR 871 Query 283 HLRRYNDALLIHDTVRAVDALAALQDFYHR 312 L L+++ DA L+D+ HR Sbjct 872 GLDVKQLKLVVN-----YDAPNHLEDYVHR 896 >sp|Q6HPE6|CSHA_BACHK DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) OX=281309 GN=cshA PE=3 SV=1 Length=528 Score = 136 bits (341), Expect = 2e-32, Method: Composition-based stats. Identities = 66/324 (20%), Positives = 119/324 (37%), Gaps = 53/324 (16%) Query 253 FGTQMYEQQVVKLSEAAALAGLQEQRVYA----LHLRRYNDALLIHDTVRAVDALAALQD 308 +G Q +Q+ L + + R+ LR N ++ D + + ++D Sbjct 105 YGGQDINRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIED 164 Query 309 F---------YHREHVTKTQILCAERRLLALFDDRKNELA------------HLATHGPE 347 H+ + + RR+ F + E Sbjct 165 IEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQE 224 Query 348 NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG 407 K ++L ++L Q + I+F RT++ L L L G Sbjct 225 KKKFDVLTRLLDIQ----SPELAIVFGRTKRRVDELSEALN--------------LRGYA 266 Query 408 NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 +TQ + V++KF++G++ +LVAT VA GLDI V + + + S V Sbjct 267 AEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVH 326 Query 468 ARGR-ARADQSVYA--FVATEGSRELK------RELINEALETLMEQAVAAVQKMDQAEY 518 GR RA + A FV S +LK + ++ +++A+ Q++ + Sbjct 327 RIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKL 386 Query 519 QAKIRDLQQAALTKRAAQAAQREN 542 Q+ I + + A KR A+ EN Sbjct 387 QSTIEN-ENLAYYKRIAEEMLEEN 409 Score = 50.2 bits (118), Expect = 5e-05, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 51/129 (40%), Gaps = 6/129 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLET-VDGAKVVVLVNRVHLVTQHGE 65 Q E I AL+GK+II TG GKT A ++T + + +V+ L Q GE Sbjct 29 QAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGE 88 Query 66 EFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 E ++ R + + G L + +++ T + + + L Sbjct 89 ELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINRKT----LRLQN 144 Query 125 FSLIVVDEC 133 +V+DE Sbjct 145 VETVVLDEA 153 >sp|Q81VG0|CSHA_BACAN DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus anthracis OX=1392 GN=cshA PE=3 SV=1 Length=528 Score = 136 bits (341), Expect = 2e-32, Method: Composition-based stats. Identities = 66/324 (20%), Positives = 119/324 (37%), Gaps = 53/324 (16%) Query 253 FGTQMYEQQVVKLSEAAALAGLQEQRVYA----LHLRRYNDALLIHDTVRAVDALAALQD 308 +G Q +Q+ L + + R+ LR N ++ D + + ++D Sbjct 105 YGGQDINRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIED 164 Query 309 F---------YHREHVTKTQILCAERRLLALFDDRKNELA------------HLATHGPE 347 H+ + + RR+ F + E Sbjct 165 IEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQE 224 Query 348 NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG 407 K ++L ++L Q + I+F RT++ L L L G Sbjct 225 KKKFDVLTRLLDIQ----SPELAIVFGRTKRRVDELSEALN--------------LRGYA 266 Query 408 NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 +TQ + V++KF++G++ +LVAT VA GLDI V + + + S V Sbjct 267 AEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVH 326 Query 468 ARGR-ARADQSVYA--FVATEGSRELK------RELINEALETLMEQAVAAVQKMDQAEY 518 GR RA + A FV S +LK + ++ +++A+ Q++ + Sbjct 327 RIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKL 386 Query 519 QAKIRDLQQAALTKRAAQAAQREN 542 Q+ I + + A KR A+ EN Sbjct 387 QSTIEN-ENLAYYKRIAEEMLEEN 409 Score = 50.2 bits (118), Expect = 5e-05, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 51/129 (40%), Gaps = 6/129 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLET-VDGAKVVVLVNRVHLVTQHGE 65 Q E I AL+GK+II TG GKT A ++T + + +V+ L Q GE Sbjct 29 QAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGE 88 Query 66 EFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 E ++ R + + G L + +++ T + + + L Sbjct 89 ELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINRKT----LRLQN 144 Query 125 FSLIVVDEC 133 +V+DE Sbjct 145 VETVVLDEA 153 >sp|A0R8U6|CSHA_BACAH DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus thuringiensis (strain Al Hakam) OX=412694 GN=cshA PE=3 SV=1 Length=528 Score = 136 bits (341), Expect = 2e-32, Method: Composition-based stats. Identities = 66/324 (20%), Positives = 119/324 (37%), Gaps = 53/324 (16%) Query 253 FGTQMYEQQVVKLSEAAALAGLQEQRVYA----LHLRRYNDALLIHDTVRAVDALAALQD 308 +G Q +Q+ L + + R+ LR N ++ D + + ++D Sbjct 105 YGGQDINRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIED 164 Query 309 F---------YHREHVTKTQILCAERRLLALFDDRKNELA------------HLATHGPE 347 H+ + + RR+ F + E Sbjct 165 IEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQE 224 Query 348 NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG 407 K ++L ++L Q + I+F RT++ L L L G Sbjct 225 KKKFDVLTRLLDIQ----SPELAIVFGRTKRRVDELSEALN--------------LRGYA 266 Query 408 NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 +TQ + V++KF++G++ +LVAT VA GLDI V + + + S V Sbjct 267 AEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVH 326 Query 468 ARGR-ARADQSVYA--FVATEGSRELK------RELINEALETLMEQAVAAVQKMDQAEY 518 GR RA + A FV S +LK + ++ +++A+ Q++ + Sbjct 327 RIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKL 386 Query 519 QAKIRDLQQAALTKRAAQAAQREN 542 Q+ I + + A KR A+ EN Sbjct 387 QSTIEN-ENLAYYKRIAEEMLEEN 409 Score = 50.2 bits (118), Expect = 5e-05, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 51/129 (40%), Gaps = 6/129 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLET-VDGAKVVVLVNRVHLVTQHGE 65 Q E I AL+GK+II TG GKT A ++T + + +V+ L Q GE Sbjct 29 QAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGE 88 Query 66 EFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 E ++ R + + G L + +++ T + + + L Sbjct 89 ELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINRKT----LRLQN 144 Query 125 FSLIVVDEC 133 +V+DE Sbjct 145 VETVVLDEA 153 >sp|Q4IFI0|RRP3_GIBZE ATP-dependent rRNA helicase RRP3 OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=RRP3 PE=3 SV=1 Length=486 Score = 135 bits (339), Expect = 2e-32, Method: Composition-based stats. Identities = 72/402 (18%), Positives = 137/402 (34%), Gaps = 49/402 (12%) Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 +P + + ++ L T + P LQ +P + L +++ Sbjct 84 TPIQEKSIPVALQGRDIIGLAE---TGSGKTAAFALPVLQALLDKPQPLFGLVLAPTRE- 139 Query 229 FGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN 288 + + + + L + G Q + L + + R+ HL + Sbjct 140 LATQIGQAFEAL-GSLISLRCAVIVGGLDMVPQAIALGKKPHIVVATPGRLVD-HLEKTK 197 Query 289 DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFD----DRKNELAHLATH 344 L +D L D + K R LF + L + Sbjct 198 GFSLRTLKYLIMDEADRLLDMDFGPSIDKILKFVPRERRTYLFSATISSKIESLQRASLR 257 Query 345 GPE-----NPKLEMLEKILQRQFSSSNSPR---------------GIIFTRTRQSAHSLL 384 P + K + + +LQ + + I+FTRT + Sbjct 258 DPVKVSISSNKYQTVSTLLQNYLFIPHPQKDVHLIYLINEHAGQSTIVFTRTVWETQRVS 317 Query 385 LWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEG 444 + L+ +G G ++Q + + KF+ GT ++LVAT VA G Sbjct 318 ILLRT--------------LGFGAIPLHGQLSQSSRLGALNKFRSGTRDILVATDVAARG 363 Query 445 LDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETL 502 LDIP +VV+ Y L + + + GR ARA +S A + T+ E+ + + L Sbjct 364 LDIPSVDVVLNYDLPQDSKTYIHRVGRTARAGKSGVAISLVTQYDLEIYLRIEAALGKKL 423 Query 503 MEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQR 544 E + M +Q+++ + Q+ A + + +R + Sbjct 424 AEYPTEKEEVMA---FQSRVEEAQRIARIEMKSFTEERGKKG 462 Score = 59.4 bits (142), Expect = 6e-08, Method: Composition-based stats. Identities = 67/423 (16%), Positives = 131/423 (31%), Gaps = 31/423 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQ--H 63 Q + I AL+G++II TG+GKT A A V + L+ +VL L TQ Sbjct 87 QEKSIPVALQGRDIIGLAETGSGKTAAFALPVLQALLDKPQPLFGLVLAPTRELATQIGQ 146 Query 64 G-EEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 E ++ R V DM P+A L + +++ T L L + L Sbjct 147 AFEALGSLISLRCAVIVGGLDMVPQAI--ALGKKPHIVVATPGRLVDHLEKTKG---FSL 201 Query 123 TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAI 182 +++DE I + +R L +A+ + S ++ Sbjct 202 RTLKYLIMDEADRLLDMDFGPSIDKILKFVPRERRTYL-----FSATISSKIESLQRASL 256 Query 183 NHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHD 242 +++ ++ + + P K +L + ++ + + + Sbjct 257 RDPVKV--SISSNKYQTVSTLLQNYL-FIPHPQKDVHLIYLINEHAGQSTIV-FTRTVWE 312 Query 243 HLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDA 302 + L R G +LS+++ L L + R + D + +VD Sbjct 313 TQRVSILLRTLGFGA-IPLHGQLSQSSRLGALNKFRSGTRDILVATDVAARGLDIPSVDV 371 Query 303 LAAL---QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQ 359 + QD H + + + + +L KL Sbjct 372 VLNYDLPQDSKTYIHRVGRTARAGKSGVAISLVTQYDLEIYLRIEAALGKKLAE------ 425 Query 360 RQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRD 419 + + F + A + + + + L G G D Sbjct 426 ---YPTEKEEVMAFQSRVEEAQRIARIEMKSFTEERGKKGSTLKGGRGKKGGKRGRDDMD 482 Query 420 QQE 422 ++E Sbjct 483 REE 485 >sp|Q92841|DDX17_HUMAN Probable ATP-dependent RNA helicase DDX17 OS=Homo sapiens OX=9606 GN=DDX17 PE=1 SV=2 Length=729 Score = 137 bits (345), Expect = 2e-32, Method: Composition-based stats. Identities = 73/416 (18%), Positives = 136/416 (33%), Gaps = 69/416 (17%) Query 134 HHTHK-DTVYNVIM-SQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCAN 191 HH + V +V+M + E + Q P L L+ G A G Sbjct 174 HHANFPQYVMDVLMDQHFTEPTPIQCQGFP--LALSGRDMVGIAQTGSG----------- 220 Query 192 LDTWCIMSPQNCCPQLQEHSQQP-CKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELS 250 + P + + QP ++ + P +L +++ D+ + L Sbjct 221 ------KTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLK 274 Query 251 RK--FGTQMYEQQVVKLSEAAALAGLQEQRVYAL------HLRRYNDALLIHDTVRAVD- 301 +G Q+ L + R+ +LRR L++ + R +D Sbjct 275 STCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRC-TYLVLDEADRMLDM 333 Query 302 ----ALAALQDFYHREHVTKTQILCAERRLLALFDDR----------------KNELAHL 341 + + D + T + + L +D + + + Sbjct 334 GFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQI 393 Query 342 ATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQ 401 E+ K L + L + + + IIF T++ L +++ Sbjct 394 VDVCMESEKDHKLIQ-LMEEIMAEKENKTIIFVETKRRCDDLTRRMRRD----------- 441 Query 402 LLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN 461 G +Q ++ V+ +F+ G +L+AT VA GLD+ V+ Y + Sbjct 442 ---GWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNS 498 Query 462 EISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQ 515 V GR AR+ A+ T G+ + RELI E +Q +D Sbjct 499 SEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKLMQLVDH 554 Score = 47.1 bits (110), Expect = 5e-04, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 49/136 (36%), Gaps = 11/136 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA----AAYVAKR--HLETVDGAKVVVLVNRVHLV 60 Q + AL G++++ TG+GKT A A +LE DG +VL L Sbjct 198 QCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELA 257 Query 61 TQHGEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 Q + R T + G L R ++ I T L L S + Sbjct 258 QQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTN-- 315 Query 120 VELTVFSLIVVDECHH 135 L + +V+DE Sbjct 316 --LRRCTYLVLDEADR 329 >sp|D0PV95|DDX3_CAEEL ATP-dependent RNA helicase laf-1 OS=Caenorhabditis elegans OX=6239 GN=laf-1 PE=1 SV=1 Length=708 Score = 137 bits (345), Expect = 2e-32, Method: Composition-based stats. Identities = 59/316 (19%), Positives = 114/316 (36%), Gaps = 58/316 (18%) Query 227 DPFGDLLKKLMDQIHDHLEMPELSRKF---GTQMYEQQVVKLSEAAALAGLQEQRVYALH 283 P +L ++ ++ ++ G + Y+ Q+ KL + R+ + Sbjct 322 SPTRELSLQIFNESRKFAYRTPITSALLYGGRENYKDQIHKLRLGCHILIATPGRLIDVM 381 Query 284 LRRYND-----ALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNEL 338 + L++ + R +D Q R+ V ++ E R+ A+F + Sbjct 382 DQGLIGMEGCRYLVLDEADRMLDMGFEPQ---IRQIVECNRMPSKEERITAMFSATFPKE 438 Query 339 AHLATHG----------------------------PENPKLEMLEKILQRQFSSSNSPRG 370 L E+ K L +L ++ +S Sbjct 439 IQLLAQDFLKENYVFLAVGRVGSTSENIMQKIVWVEEDEKRSYLMDLLD---ATGDSSLT 495 Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 ++F T++ A L +L +Q + + Q ++++ + F+ G Sbjct 496 LVFVETKRGASDLAYYLNRQN--------------YEVVTIHGDLKQFEREKHLDLFRTG 541 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSR 488 T +LVAT+VA GLDIP+ V+ Y L ++ V GR R A + +R Sbjct 542 TAPILVATAVAARGLDIPNVKHVINYDLPSDVDEYVHRIGRTGRVGNVGLATSFFNDKNR 601 Query 489 ELKRELINEALETLME 504 + REL++ +E E Sbjct 602 NIARELMDLIVEANQE 617 >sp|Q73EU1|CSHA_BACC1 DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus cereus (strain ATCC 10987 / NRS 248) OX=222523 GN=cshA PE=3 SV=1 Length=525 Score = 135 bits (340), Expect = 2e-32, Method: Composition-based stats. Identities = 66/324 (20%), Positives = 118/324 (36%), Gaps = 53/324 (16%) Query 253 FGTQMYEQQVVKLSEAAALAGLQEQRVYA----LHLRRYNDALLIHDTVRAVDALAALQD 308 +G Q +Q+ L + + R+ LR N ++ D + + ++D Sbjct 105 YGGQDINRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIED 164 Query 309 F---------YHREHVTKTQILCAERRLLALFDDRKNELA------------HLATHGPE 347 H+ + + RR+ F + E Sbjct 165 IEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQE 224 Query 348 NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG 407 K ++L ++L Q + I+F RT++ L L L G Sbjct 225 KKKFDVLTRLLDIQ----SPELAIVFGRTKRRVDELSEALN--------------LRGYA 266 Query 408 NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 +TQ + V++KF++G++ +LVAT VA GLDI V + + + S V Sbjct 267 AEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVH 326 Query 468 ARGR-ARADQSVYA--FVATEGSRELK------RELINEALETLMEQAVAAVQKMDQAEY 518 GR RA + A FV S +LK + ++ +++A+ Q++ + Sbjct 327 RIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKL 386 Query 519 QAKIRDLQQAALTKRAAQAAQREN 542 Q I + + A KR A+ EN Sbjct 387 QNTIEN-ENLAYYKRIAEEMLEEN 409 Score = 50.6 bits (119), Expect = 4e-05, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 51/129 (40%), Gaps = 6/129 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLET-VDGAKVVVLVNRVHLVTQHGE 65 Q E I AL+GK+II TG GKT A ++T + + +V+ L Q GE Sbjct 29 QAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGE 88 Query 66 EFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 E ++ R + + G L + +++ T + + + L Sbjct 89 ELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINRKT----LRLQN 144 Query 125 FSLIVVDEC 133 +V+DE Sbjct 145 VETVVLDEA 153 >sp|Q63GX5|CSHA_BACCZ DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus cereus (strain ZK / E33L) OX=288681 GN=cshA PE=3 SV=1 Length=528 Score = 135 bits (340), Expect = 2e-32, Method: Composition-based stats. Identities = 66/324 (20%), Positives = 119/324 (37%), Gaps = 53/324 (16%) Query 253 FGTQMYEQQVVKLSEAAALAGLQEQRVYA----LHLRRYNDALLIHDTVRAVDALAALQD 308 +G Q +Q+ L + + R+ LR N ++ D + + ++D Sbjct 105 YGGQDINRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIED 164 Query 309 F---------YHREHVTKTQILCAERRLLALFDDRKNELA------------HLATHGPE 347 H+ + + RR+ F + E Sbjct 165 IEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQE 224 Query 348 NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG 407 K ++L ++L Q + I+F RT++ L L L G Sbjct 225 KKKFDVLTRLLDIQ----SPELAIVFGRTKRRVDELSEALN--------------LRGYA 266 Query 408 NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 +TQ + V++KF++G++ +LVAT VA GLDI V + + + S V Sbjct 267 AEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVH 326 Query 468 ARGR-ARADQSVYA--FVATEGSRELK------RELINEALETLMEQAVAAVQKMDQAEY 518 GR RA + A FV S +LK + ++ +++A+ Q++ + Sbjct 327 RIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKL 386 Query 519 QAKIRDLQQAALTKRAAQAAQREN 542 Q+ I + + A KR A+ EN Sbjct 387 QSTIEN-ENLAYYKRIAEEMLEEN 409 Score = 50.2 bits (118), Expect = 5e-05, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 51/129 (40%), Gaps = 6/129 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLET-VDGAKVVVLVNRVHLVTQHGE 65 Q E I AL+GK+II TG GKT A ++T + + +V+ L Q GE Sbjct 29 QAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGE 88 Query 66 EFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 E ++ R + + G L + +++ T + + + L Sbjct 89 ELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINRKT----LRLQN 144 Query 125 FSLIVVDEC 133 +V+DE Sbjct 145 VETVVLDEA 153 >sp|O15523|DDX3Y_HUMAN ATP-dependent RNA helicase DDX3Y OS=Homo sapiens OX=9606 GN=DDX3Y PE=1 SV=2 Length=660 Score = 137 bits (344), Expect = 2e-32, Method: Composition-based stats. Identities = 58/283 (20%), Positives = 104/283 (37%), Gaps = 48/283 (17%) Query 253 FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND-----ALLIHDTVRAVDALAALQ 307 +G QQ+ L L R+ + R L++ + R +D Q Sbjct 299 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 358 Query 308 DFYHREHVTKTQILCAERRLLALFDD-RKNELAHLA-----------------THGPENP 349 R V + + R +F E+ LA T Sbjct 359 ---IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQ 415 Query 350 KLEMLEKILQRQF------SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLL 403 K+ +E + +R F ++ + ++F T++ A SL +L + Sbjct 416 KVVWVEDLDKRSFLLDILGATGSDSLTLVFVETKKGADSLEDFLYHE------------- 462 Query 404 IGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI 463 G +S +QRD++E + +F+ G +LVAT+VA GLDI + V+ + L ++ Sbjct 463 -GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIE 521 Query 464 SMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLME 504 V GR R A E + + ++L++ +E E Sbjct 522 EYVHRIGRTGRVGNLGLATSFFNEKNMNITKDLLDLLVEAKQE 564 Score = 45.2 bits (105), Expect = 0.002, Method: Composition-based stats. Identities = 27/139 (19%), Positives = 43/139 (31%), Gaps = 24/139 (17%) Query 17 GKNIIIWLPTGAGKT---------RA-------AAYVAKRHLETVDGAK---VVVLVNRV 57 ++++ TG+GKT + A K + + +VL Sbjct 215 KRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTR 274 Query 58 HLVTQHGEEFRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE 116 L Q EE R+ R + G L R LL+ T L + E Sbjct 275 ELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMM----E 330 Query 117 EEHVELTVFSLIVVDECHH 135 + L +V+DE Sbjct 331 RGKIGLDFCKYLVLDEADR 349 >sp|Q6CIV2|DBP2_KLULA ATP-dependent RNA helicase DBP2 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=DBP2 PE=3 SV=1 Length=554 Score = 136 bits (341), Expect = 2e-32, Method: Composition-based stats. Identities = 59/299 (20%), Positives = 105/299 (35%), Gaps = 52/299 (17%) Query 253 FGTQMYEQQVVKLSEAAALAGLQEQRVY------ALHLRRYNDALLIHDTVRAVDALAAL 306 +G QQ+ L + R+ +L+R L++ + R +D Sbjct 221 YGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTNLKR-VTYLVLDEADRMLDMGFEP 279 Query 307 QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGP-------------------- 346 Q R+ V + + A + +LA H P Sbjct 280 Q---IRKIVDQIRPDRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIV 336 Query 347 ----ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL 402 + K + L K L S + IIF T+++ + +L+ + Sbjct 337 EVLTDFEKRDRLAKHL-ETASQDQDSKIIIFASTKRTCDEITSYLRTE------------ 383 Query 403 LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE 462 G + Q ++ V+ +F+ G ++VAT VA G+D+ N V+ Y + N Sbjct 384 --GWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGIDVKGINYVINYDMPGNI 441 Query 463 ISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQ 519 V GR RA + A TEG++ L LI E + +++ D+ +Y Sbjct 442 EDYVHRIGRTGRAGSTGTAISFFTEGNKSLGAALIKIMREA-KQDIPEELRRYDRGQYG 499 Score = 55.2 bits (131), Expect = 1e-06, Method: Composition-based stats. Identities = 34/129 (26%), Positives = 49/129 (38%), Gaps = 11/129 (9%) Query 14 ALEGKNIIIWLPTGAGKTR------AAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEF 67 AL G+++I TG+GKT A+ L DG V+VL L Q +E Sbjct 147 ALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQKEC 206 Query 68 RRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS 126 + R T + G + L R ++LI T L L E L + Sbjct 207 SKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDML----EIGKTNLKRVT 262 Query 127 LIVVDECHH 135 +V+DE Sbjct 263 YLVLDEADR 271 >sp|Q59LU0|DBP2_CANAL ATP-dependent RNA helicase DBP2 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DBP2 PE=3 SV=2 Length=562 Score = 135 bits (340), Expect = 2e-32, Method: Composition-based stats. Identities = 65/390 (17%), Positives = 131/390 (34%), Gaps = 58/390 (15%) Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQY-NLCHRRSQD 227 +P + + ++ + A T + C P + + QP QY + Sbjct 151 TPIQCQGWPMALSGRDMIGIAA---TGSGKTLSYCLPSIVHINAQPQLQYGDGPIVLVLA 207 Query 228 PFGDLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEAAALAGLQEQRVY----- 280 P +L ++ + + + +G Q+ L+ + R+ Sbjct 208 PTRELAVQIQTECSKFGKSSRIRNTCVYGGAPKGPQIRDLARGVEICIATPGRLIDMLEA 267 Query 281 -ALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELA 339 +L+R L++ + R +D Q R+ V + + A + +L Sbjct 268 GKTNLKR-VTYLVLDEADRMLDMGFEPQ---IRKIVDQIRPDRQTLMWSATWPKEVQQLT 323 Query 340 HLATHGP------------------------ENPKLEMLEKILQRQFSSSNSPRGIIFTR 375 + P E K + L K L+ + + ++F Sbjct 324 RDYLNDPIQVTIGSLELAASHTITQLVEVIDEFSKRDRLVKHLESAL-NEKDNKILVFAS 382 Query 376 TRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLL 435 T+++ + +L+ G + Q ++ V+ +F+ G +++ Sbjct 383 TKRTCDEITTYLRSD--------------GWPALAIHGDKEQNERDWVLDEFRKGKTSIM 428 Query 436 VATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRE 493 VAT VA G+D+ V+ Y + N V GR R S A TEG+ +L + Sbjct 429 VATDVAARGIDVKGITHVINYDMPGNIEDYVHRIGRTGRGGASGTAISFFTEGNSKLGGD 488 Query 494 LINEALETLMEQAVAAVQKMDQAEYQAKIR 523 L E +Q+ D+ Y + +R Sbjct 489 LCKIMREANQ-TVPPELQRFDRRSYGSHMR 517 Score = 52.5 bits (124), Expect = 1e-05, Method: Composition-based stats. Identities = 33/129 (26%), Positives = 50/129 (39%), Gaps = 11/129 (9%) Query 14 ALEGKNIIIWLPTGAGKTRAAAYVAKRH------LETVDGAKVVVLVNRVHLVTQHGEEF 67 AL G+++I TG+GKT + + H L+ DG V+VL L Q E Sbjct 161 ALSGRDMIGIAATGSGKTLSYCLPSIVHINAQPQLQYGDGPIVLVLAPTRELAVQIQTEC 220 Query 68 RRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS 126 + R T + G LAR ++ I T L L + + L + Sbjct 221 SKFGKSSRIRNTCVYGGAPKGPQIRDLARGVEICIATPGRLIDMLEAGKTN----LKRVT 276 Query 127 LIVVDECHH 135 +V+DE Sbjct 277 YLVLDEADR 285 >sp|Q5RF43|DDX3Y_PONAB ATP-dependent RNA helicase DDX3Y OS=Pongo abelii OX=9601 GN=DDX3Y PE=2 SV=1 Length=658 Score = 136 bits (342), Expect = 3e-32, Method: Composition-based stats. Identities = 58/283 (20%), Positives = 103/283 (36%), Gaps = 48/283 (17%) Query 253 FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND-----ALLIHDTVRAVDALAALQ 307 +G QQ+ L L R+ + R L++ + R +D Q Sbjct 299 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 358 Query 308 DFYHREHVTKTQILCAERRLLALFDD-RKNELAHLA-----------------THGPENP 349 R V + + R +F E+ LA T Sbjct 359 ---IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQ 415 Query 350 KLEMLEKILQRQF------SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLL 403 K+ +E + +R F ++ ++F T++ A SL +L + Sbjct 416 KVVWVEDLDKRSFLLDLLGATGRDSLTLVFVETKKGADSLEDFLYHE------------- 462 Query 404 IGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI 463 G +S +QRD++E + +F+ G +LVAT+VA GLDI + V+ + L ++ Sbjct 463 -GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIE 521 Query 464 SMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLME 504 V GR R A E + + ++L++ +E E Sbjct 522 EYVHRIGRTGRVGNLGLATSFFNEKNMNITKDLLDLLVEAKQE 564 Score = 45.2 bits (105), Expect = 0.002, Method: Composition-based stats. Identities = 27/139 (19%), Positives = 43/139 (31%), Gaps = 24/139 (17%) Query 17 GKNIIIWLPTGAGKT---------RA-------AAYVAKRHLETVDGAK---VVVLVNRV 57 ++++ TG+GKT + A K + + +VL Sbjct 215 KRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTR 274 Query 58 HLVTQHGEEFRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE 116 L Q EE R+ R + G L R LL+ T L + E Sbjct 275 ELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMM----E 330 Query 117 EEHVELTVFSLIVVDECHH 135 + L +V+DE Sbjct 331 RGKIGLDFCKYLVLDEADR 349 >sp|Q6GVM6|DDX3Y_PANTR ATP-dependent RNA helicase DDX3Y OS=Pan troglodytes OX=9598 GN=DDX3Y PE=2 SV=1 Length=660 Score = 136 bits (342), Expect = 3e-32, Method: Composition-based stats. Identities = 58/283 (20%), Positives = 103/283 (36%), Gaps = 48/283 (17%) Query 253 FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND-----ALLIHDTVRAVDALAALQ 307 +G QQ+ L L R+ + R L++ + R +D Q Sbjct 299 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 358 Query 308 DFYHREHVTKTQILCAERRLLALFDD-RKNELAHLA-----------------THGPENP 349 R V + + R +F E+ LA T Sbjct 359 ---IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQ 415 Query 350 KLEMLEKILQRQF------SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLL 403 K+ +E + +R F ++ ++F T++ A SL +L + Sbjct 416 KVVWVEDLDKRSFLLDILGAAGTDSLTLVFVETKKGADSLEDFLYHE------------- 462 Query 404 IGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI 463 G +S +QRD++E + +F+ G +LVAT+VA GLDI + V+ + L ++ Sbjct 463 -GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIE 521 Query 464 SMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLME 504 V GR R A E + + ++L++ +E E Sbjct 522 EYVHRIGRTGRVGNLGLATSFFNEKNINITKDLLDLLVEAKQE 564 Score = 45.2 bits (105), Expect = 0.002, Method: Composition-based stats. Identities = 27/139 (19%), Positives = 43/139 (31%), Gaps = 24/139 (17%) Query 17 GKNIIIWLPTGAGKT---------RA-------AAYVAKRHLETVDGAK---VVVLVNRV 57 ++++ TG+GKT + A K + + +VL Sbjct 215 KRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTR 274 Query 58 HLVTQHGEEFRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE 116 L Q EE R+ R + G L R LL+ T L + E Sbjct 275 ELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMM----E 330 Query 117 EEHVELTVFSLIVVDECHH 135 + L +V+DE Sbjct 331 RGKIGLDFCKYLVLDEADR 349 >sp|Q0DB53|RH52A_ORYSJ DEAD-box ATP-dependent RNA helicase 52A OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0602400 PE=2 SV=2 Length=602 Score = 136 bits (341), Expect = 3e-32, Method: Composition-based stats. Identities = 64/312 (21%), Positives = 110/312 (35%), Gaps = 56/312 (18%) Query 247 PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND-----ALLIHDTVRAVD 301 + +G Q+ L A + R+ + R L++ + R +D Sbjct 197 LRVVVAYGGTPMYNQLRDLERGADILVATPGRLVDMVERSKVSLEAIKYLVMDEADRMLD 256 Query 302 ALAALQDFYHREHVTKTQILCAERRLLALFDD-RKNELAHLATHGPEN------------ 348 Q R+ V + + R LF E+ LA+ N Sbjct 257 MGFEPQ---IRKIVERMNMPRKSVRQTMLFSATFPPEIQRLASDFLSNYIFITVGRVGSS 313 Query 349 -----PKLE---------MLEKILQRQFSSSNSPR-----GIIFTRTRQSAHSLLLWLQQ 389 K+E L +LQRQ + + ++F T++ A SL WL Sbjct 314 TDLIMQKVELLSDGEKRGYLLDLLQRQSVGVANSKLQQPLTLVFVETKREADSLRYWLYS 373 Query 390 QQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPH 449 + G ++ TQ++++ ++ F+ G ++VAT VA GLD+P+ Sbjct 374 K--------------GFPATAIHGDRTQQERESALRSFKTGLTPIMVATDVASRGLDVPN 419 Query 450 CNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAV 507 V+ Y L + V GR RA ++ A TE L + L+ E + Sbjct 420 VAHVINYDLPKSIEDYVHRIGRTGRAGKAGSATAFFTESDHSLAKGLLELMTEAKQDVPD 479 Query 508 AAVQKMDQAEYQ 519 VQ ++ Y Sbjct 480 WLVQYAERPYYG 491 Score = 47.1 bits (110), Expect = 4e-04, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 50/141 (35%), Gaps = 24/141 (17%) Query 14 ALEGKNIIIWLPTGAGKT----------RAAA---YVAKRHLETVDGA----KVVVLVNR 56 AL G++++ TG+GKT AA + R + + A + +VL Sbjct 118 ALAGRDLMACAQTGSGKTAAFCLPVVSGLVAAGGSGIGHRERSSFNRAAAKPRALVLAPT 177 Query 57 VHLVTQHGEEFRRML--DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP 114 L Q EE ++ G V G L R D+L+ T L + Sbjct 178 RELAAQINEEAKKFSFQTGLRVVVAYGGTPMYNQLRD-LERGADILVATPGRLVDMV--- 233 Query 115 EEEEHVELTVFSLIVVDECHH 135 E V L +V+DE Sbjct 234 -ERSKVSLEAIKYLVMDEADR 253 >sp|P57453|DEAD_BUCAI ATP-dependent RNA helicase DeaD OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) OX=107806 GN=deaD PE=3 SV=1 Length=601 Score = 135 bits (340), Expect = 3e-32, Method: Composition-based stats. Identities = 62/328 (19%), Positives = 125/328 (38%), Gaps = 43/328 (13%) Query 207 LQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLS 266 L + K + + + ++ + +G Q YE Q+ L Sbjct 64 LLHNLNINLKAPQILVLAPTRELAVQVAEAFSDFSKYMIGIHVLPLYGGQRYELQLRALR 123 Query 267 EAAALAGLQEQRVYALHLRRY-----NDALLIHDTVRAVDALAALQD---------FYHR 312 + + R+ HL+R N L+ D + + ++D H+ Sbjct 124 QGPQIVVGTPGRLLD-HLKRGTLNLSNLHGLVLDEADEMLRMGFIEDVETIMAQIPKEHQ 182 Query 313 EHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLE--------MLEKILQRQFSS 364 + + A RR+ F E+ + ++ P ++ L R + Sbjct 183 TALFSATMPEAIRRISKRFMRNPKEIK-IQSNITTRPDIKQSYWMVYGRKTDALIRFLEA 241 Query 365 SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI 424 + IIF RT+ + + L++ G +++ + M Q +++ + Sbjct 242 EDFSATIIFVRTKNATLEVSEALERN--------------GYNSAALNGDMNQALREQTL 287 Query 425 QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVA 483 ++ ++G L++L+AT VA GLD+ + V+ Y + + S V GR RA ++ A + Sbjct 288 ERLKNGRLDILIATDVAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRAGRALLF 347 Query 484 TEGSRELKRELINEALETLMEQAVAAVQ 511 E +R L N +E M+Q++ VQ Sbjct 348 VENRE--RRLLRN--IERTMKQSIPEVQ 371 Score = 53.6 bits (127), Expect = 4e-06, Method: Composition-based stats. Identities = 28/122 (23%), Positives = 47/122 (39%), Gaps = 7/122 (6%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGEEFRRMLD- 72 LEG++++ TG+GKT A + +L A +++VL L Q E F Sbjct 41 LEGRDVLGMAQTGSGKTAAFSLPLLHNLNINLKAPQILVLAPTRELAVQVAEAFSDFSKY 100 Query 73 -GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVD 131 V L G L + +++ T L L + + L+ +V+D Sbjct 101 MIGIHVLPLYGGQRYELQLRALRQGPQIVVGTPGRLLDHL----KRGTLNLSNLHGLVLD 156 Query 132 EC 133 E Sbjct 157 EA 158 >sp|Q0UK12|RRP3_PHANO ATP-dependent rRNA helicase RRP3 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) OX=321614 GN=RRP3 PE=3 SV=2 Length=546 Score = 134 bits (338), Expect = 3e-32, Method: Composition-based stats. Identities = 80/405 (20%), Positives = 145/405 (36%), Gaps = 54/405 (13%) Query 167 TASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQ 226 TA+P + L A ++ L T + P LQ +P + L Sbjct 137 TATPIQTESIPLALAGKDIIGLAE---TGSGKTAAFVLPILQALLDKPQAYFGLIMA--- 190 Query 227 DPFGDLLKKLMDQIHDHLEMPELS--RKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHL 284 P +L ++ Q+ + + G Q + LS+ + R+ HL Sbjct 191 -PTRELAYQISQQVDALGSIINVKCATLVGGMDMVPQAIALSKRPHIIVASPGRLLD-HL 248 Query 285 RRYNDALLIHDTVRAVDALAALQDFYHREHVTK-TQILCAERRLLALFD----DRKNELA 339 L H +D L D + + K ++L + R LF + L Sbjct 249 ENTKGFSLKHLKYLVLDEADRLLDLDFGDSLDKIFKVLPRDDRHTYLFSATMSSKVESLQ 308 Query 340 HLATHGPE--------NPKLEMLEK------------ILQRQFSSSNSPRGIIFTRTRQS 379 A P + + L + L + + I+FTRT Sbjct 309 RAALKNPVRVSISSSSHQVVSTLLQSYMLIPHKYKDLYLIHLLNDNIGHATILFTRTVNE 368 Query 380 AHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATS 439 L + L+ +G ++Q ++ + KF+ ++LVAT Sbjct 369 TQRLAVLLRT--------------LGFQALPLHGQLSQSNRLGALNKFKAKARDILVATD 414 Query 440 VAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINE 497 VA GLDIP ++VV + L + + V GR ARA +S A T+ E+ + + + Sbjct 415 VAARGLDIPSVDLVVNFDLPHDSETYVHRVGRTARAGKSGKAVSFVTQYDLEIFQRIEHA 474 Query 498 ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQREN 542 + + E+ V+ + M Y ++ + Q+ A+ + QR++ Sbjct 475 LGKQVPEEKVSRDEVM---VYAERVGEAQRVAVREMKDLHDQRKS 516 Score = 61.7 bits (148), Expect = 1e-08, Method: Composition-based stats. Identities = 59/389 (15%), Positives = 131/389 (34%), Gaps = 38/389 (10%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKV-VVLVNRVHL---VTQ 62 Q E I AL GK+II TG+GKT A + L A +++ L ++Q Sbjct 142 QTESIPLALAGKDIIGLAETGSGKTAAFVLPILQALLDKPQAYFGLIMAPTRELAYQISQ 201 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 + +++ + DM P+A L++ +++ + L L + + L Sbjct 202 QVDALGSIINVKCATLVGGMDMVPQAI--ALSKRPHIIVASPGRLLDHLENTKG---FSL 256 Query 123 TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQ-----VLGLTASPGTGGASK 177 +V+DE ++ + + + + LP+ L +A+ + S Sbjct 257 KHLKYLVLDEADR--------LLDLDFGDSLDKIFKVLPRDDRHTYL-FSATMSSKVESL 307 Query 178 LDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLM 237 A+ + +++ + S Q LQ + P K +L + L Sbjct 308 QRAALKNPVRV-----SISSSSHQVVSTLLQSYMLIPHKYKDLYLIHLLNDNIGHATILF 362 Query 238 DQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTV 297 + + + + + +LS++ L L + + A + D + Sbjct 363 TRTVNETQRLAVLLRTLGFQALPLHGQLSQSNRLGALNKFKAKARDILVATDVAARGLDI 422 Query 298 RAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKI 357 +VD + + + ++ A ++ + + E + +E Sbjct 423 PSVDLV------VNFDLPHDSETYVHRVGRTARAGKSGKAVSFVTQYDLEI--FQRIEHA 474 Query 358 LQRQFSSSNSPR--GIIFTRTRQSAHSLL 384 L +Q R +++ A + Sbjct 475 LGKQVPEEKVSRDEVMVYAERVGEAQRVA 503 >sp|Q5GUR8|RHLB_XANOR ATP-dependent RNA helicase RhlB OS=Xanthomonas oryzae pv. oryzae (strain KACC10331 / KXO85) OX=291331 GN=rhlB PE=3 SV=2 Length=574 Score = 135 bits (339), Expect = 4e-32, Method: Composition-based stats. Identities = 66/377 (18%), Positives = 118/377 (31%), Gaps = 58/377 (15%) Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 S G + + V ++ L + + L R+ +DP Sbjct 26 SAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLNRPALADRKPEDP 85 Query 229 FGDLL---KKLMDQIH------DHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRV 279 +L ++L QIH + +G Y++Q L + + R+ Sbjct 86 RALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRL 145 Query 280 YALHLRRYN------DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD 333 + + ++ + R D L ++D + A Sbjct 146 IDYVKQHKVVSLHACEICVLDEADRMFD-LGFIKDIRFLLRRMPERGTRQTLLFSATLSH 204 Query 334 RKNELAHLATHGPE-------------------NPKLEMLEKILQRQFSSSNSPRGIIFT 374 R ELA+ + PE P + + +L S S R ++F Sbjct 205 RVLELAYEHMNEPEKLVVETETITAARVRQRIYFPSDDEKQTLLLGLLSRSEGARTMVFV 264 Query 375 RTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNL 434 T+ + L++ G S + Q+ ++ ++ +FQ G L + Sbjct 265 NTKAFVERVARTLER--------------HGYRVGVLSGDVPQKKRESLLNRFQKGQLEI 310 Query 435 LVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSV--YAFVATEGSRELK 491 LVAT VA GL I V Y L + V GR AR + +F + L Sbjct 311 LVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLP 370 Query 492 RELINEALETLMEQAVA 508 +E +EQ + Sbjct 371 ------DIEAYIEQKIP 381 Score = 49.8 bits (117), Expect = 7e-05, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 39/119 (33%), Gaps = 12/119 (10%) Query 26 TGAGKT---RAAAY-VAKRHLETVDGA----KVVVLVNRVHLVTQ-HGEEFRRMLDGRWT 76 TG GKT A D + ++L L Q H + + D Sbjct 55 TGTGKTLAFLVAVMNRLLNRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLR 114 Query 77 VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH 135 + G + L + D++I T L + ++ + V L + V+DE Sbjct 115 FALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYV---KQHKVVSLHACEICVLDEADR 170 >sp|A6QRQ7|RRP3_AJECN ATP-dependent rRNA helicase RRP3 OS=Ajellomyces capsulatus (strain NAm1 / WU24) OX=2059318 GN=RRP3 PE=3 SV=1 Length=485 Score = 134 bits (336), Expect = 4e-32, Method: Composition-based stats. Identities = 74/402 (18%), Positives = 141/402 (35%), Gaps = 49/402 (12%) Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 +P + L ++ L T + P LQ +P + L +++ Sbjct 83 TPIQAESIPLALQGRDLIGLAE---TGSGKTAAFALPILQALMNKPQSLFGLILAPTRE- 138 Query 229 FGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN 288 + + + + L + G Q + L + + R+ HL Sbjct 139 LACQISEAFEAL-GSLISVRCAVIVGGMDMVSQAISLGKKPHIIVATPGRLLD-HLENTK 196 Query 289 DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFD----DRKNELAHLATH 344 L +D L D + K + R LF + L + Sbjct 197 GFSLRSLKYLVMDEADRLLDLDFGPILDKILKVLPRERRTYLFSATMSSKVESLQRASLS 256 Query 345 GPE-----NPKLEMLEKILQRQFSSSNSPR---------------GIIFTRTRQSAHSLL 384 P + K + + +LQ + + I+FTRT L Sbjct 257 NPLRVSISSNKYQTVATLLQSYLFIPHKYKDIYLVYLLNEYAGQSAIVFTRTVNETQRLA 316 Query 385 LWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEG 444 + L+ +G G+ ++Q + + KF+ + ++LVAT VA G Sbjct 317 ILLRA--------------LGFGSIPLHGQLSQSSRLGALSKFRSRSRDILVATDVAARG 362 Query 445 LDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETL 502 LDIP +VV+ + L ++ + + GR ARA +S +AF + T+ E+ + N + L Sbjct 363 LDIPSVDVVLNFDLPSDSKTYIHRVGRTARAGKSGHAFSIVTQYDIEVWLRIENALGKKL 422 Query 503 MEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQR 544 E V + M ++ + Q+ A+T+ +R ++ Sbjct 423 DEYKVEKEEVM---VLSDRVGEAQRHAITEMKDLHEKRGSRG 461 Score = 64.0 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 46/274 (17%), Positives = 99/274 (36%), Gaps = 15/274 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKV-VVLVNRVHLVTQHGE 65 Q E I AL+G+++I TG+GKT A A + L + ++L L Q E Sbjct 86 QAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMNKPQSLFGLILAPTRELACQISE 145 Query 66 EFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 F + + G M + L + +++ T L L + + L Sbjct 146 AFEALGSLISVRCAVIVGGMDMVSQAISLGKKPHIIVATPGRLLDHLENTKG---FSLRS 202 Query 125 FSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINH 184 +V+DE D + I+ + L++ + + +A+ + S ++++ Sbjct 203 LKYLVMDEADRLL-DLDFGPILDKILKVLPRERRTYL----FSATMSSKVESLQRASLSN 257 Query 185 VLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHL 244 L++ + Q LQ + P K ++ + + + + + Sbjct 258 PLRV-----SISSNKYQTVATLLQSYLFIPHKYKDIYLVYLLNEYAGQSAIVFTRTVNET 312 Query 245 EMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQR 278 + + + +LS+++ L L + R Sbjct 313 QRLAILLRALGFGSIPLHGQLSQSSRLGALSKFR 346 >sp|O00571|DDX3X_HUMAN ATP-dependent RNA helicase DDX3X OS=Homo sapiens OX=9606 GN=DDX3X PE=1 SV=3 Length=662 Score = 136 bits (341), Expect = 4e-32, Method: Composition-based stats. Identities = 58/283 (20%), Positives = 103/283 (36%), Gaps = 48/283 (17%) Query 253 FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND-----ALLIHDTVRAVDALAALQ 307 +G QQ+ L L R+ + R L++ + R +D Q Sbjct 301 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 360 Query 308 DFYHREHVTKTQILCAERRLLALFDD-RKNELAHLA-----------------THGPENP 349 R V + + R +F E+ LA T Sbjct 361 ---IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQ 417 Query 350 KLEMLEKILQRQF------SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLL 403 K+ +E+ +R F ++ ++F T++ A SL +L + Sbjct 418 KVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE------------- 464 Query 404 IGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI 463 G +S +QRD++E + +F+ G +LVAT+VA GLDI + V+ + L ++ Sbjct 465 -GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIE 523 Query 464 SMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLME 504 V GR R A E + + ++L++ +E E Sbjct 524 EYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQE 566 Score = 47.9 bits (112), Expect = 3e-04, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 46/149 (31%), Gaps = 24/149 (16%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT---------RA-------AAYVAKRHLETVDGAK- 49 Q I E ++++ TG+GKT + A K + + Sbjct 207 QKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQY 266 Query 50 --VVVLVNRVHLVTQHGEEFRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAEL 106 +VL L Q EE R+ R + G L R LL+ T Sbjct 267 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGR 326 Query 107 LQMALTSPEEEEHVELTVFSLIVVDECHH 135 L + E + L +V+DE Sbjct 327 LVDMM----ERGKIGLDFCKYLVLDEADR 351 >sp|P16381|DDX3L_MOUSE Putative ATP-dependent RNA helicase Pl10 OS=Mus musculus OX=10090 GN=D1Pas1 PE=1 SV=1 Length=660 Score = 136 bits (341), Expect = 4e-32, Method: Composition-based stats. Identities = 58/283 (20%), Positives = 103/283 (36%), Gaps = 48/283 (17%) Query 253 FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND-----ALLIHDTVRAVDALAALQ 307 +G QQ+ L L R+ + R L++ + R +D Q Sbjct 300 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 359 Query 308 DFYHREHVTKTQILCAERRLLALFDD-RKNELAHLA-----------------THGPENP 349 R V + + R +F E+ LA T Sbjct 360 ---IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQ 416 Query 350 KLEMLEKILQRQF------SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLL 403 K+ +E+ +R F ++ ++F T++ A SL +L + Sbjct 417 KVVWVEEADKRSFLLDLLNATGKDSLILVFVETKKGADSLEDFLYHE------------- 463 Query 404 IGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI 463 G +S +QRD++E + +F+ G +LVAT+VA GLDI + V+ + L ++ Sbjct 464 -GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIE 522 Query 464 SMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLME 504 V GR R A E + + ++L++ +E E Sbjct 523 EYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQE 565 Score = 47.1 bits (110), Expect = 4e-04, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 47/149 (32%), Gaps = 24/149 (16%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT---------RA-------AAYVAKRHLETVDGAK- 49 Q I E ++++ TG+GKT + A K + + + Sbjct 206 QKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALRAMKENGKYGRRKQY 265 Query 50 --VVVLVNRVHLVTQHGEEFRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAEL 106 +VL L Q EE R+ R + G L R LL+ T Sbjct 266 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGR 325 Query 107 LQMALTSPEEEEHVELTVFSLIVVDECHH 135 L + E + L +V+DE Sbjct 326 LVDMM----ERGKIGLDFCKYLVLDEADR 350 >sp|Q4WT99|PRP5_ASPFU Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293) OX=330879 GN=prp5 PE=3 SV=1 Length=1211 Score = 137 bits (345), Expect = 4e-32, Method: Composition-based stats. Identities = 67/368 (18%), Positives = 127/368 (35%), Gaps = 47/368 (13%) Query 212 QQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAA 269 Q+P + P +L ++ L+ L +G + Q+ +L A Sbjct 640 QRPLENMEGPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAELKRGA 699 Query 270 ALAGLQEQRVYAL--------HLRRYNDALLIHDTVRAVD---------ALAALQDFYH- 311 + R+ L R +++ + R D +A ++ Sbjct 700 EIVVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRPDRQT 759 Query 312 ----------REHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQ 361 E + + + ++ E+ + E+ K L +IL Sbjct 760 VLFSATFPRNMEALARKSLTKPIEIVVGGKSVVAPEITQIVEVRNEDTKFVRLLEILGNL 819 Query 362 FSS--SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRD 419 +S + R +IF +++A +LL L ++ G S Q D Sbjct 820 YSDDANEDARALIFVDRQEAADTLLRELMRK--------------GYPCMSIHGGKDQID 865 Query 420 QQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSV 478 + I+ F+ G +L+ATSVA GLD+ +VV Y + V GR RA + Sbjct 866 RDSTIEDFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTG 925 Query 479 YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA 538 A +E I +AL ++ VQKM + + ++A+ + + Sbjct 926 TAVTFLTEEQERYSVDIAKALRQSGQKVPEPVQKMVDSFLEKVKAGKEKASASGFGGKGL 985 Query 539 QRENQRQQ 546 +R +Q + Sbjct 986 ERLDQERD 993 Score = 60.6 bits (145), Expect = 4e-08, Method: Composition-based stats. Identities = 61/388 (16%), Positives = 123/388 (32%), Gaps = 42/388 (11%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYV-AKRH------LETVDGAKVVVLVNRVHL 59 Q + I + G+++I TG+GKT A + RH LE ++G +++ L Sbjct 602 QSQAIPAIMSGRDVIGVAKTGSGKT-IAFLIPMFRHIRDQRPLENMEGPIGLIMTPTREL 660 Query 60 VTQHGEEFRRMLDG--RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE 117 TQ ++ + L V G L R ++++CT + L + Sbjct 661 ATQIHKDCKPFLKALNLRAVCAYGGAPIKDQI-AELKRGAEIVVCTPGRMIDLLAANAGR 719 Query 118 EHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS-PGTGGAS 176 L + +V+DE +M ++ R L +A+ P A Sbjct 720 -VTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRPDRQTVL-----FSATFPRNMEAL 773 Query 177 KLDGAINHVL-----QLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYN---------LCH 222 + + + I+ +N + + Y+ L Sbjct 774 ARKSLTKPIEIVVGGKSVVAPEITQIVEVRNEDTKFVRLLEILGNLYSDDANEDARALIF 833 Query 223 RRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYAL 282 Q+ LL++LM + + + + + + +A L V A Sbjct 834 VDRQEAADTLLRELMRKGYPCMSIHGGKDQIDRDSTIE----DFKAGIFPVLIATSVAAR 889 Query 283 HLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLA 342 L L+++ DA L+D+ HR T + + + Sbjct 890 GLDVKQLKLVVN-----YDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEEQERYSVDIAK 944 Query 343 THGPENPKL-EMLEKILQRQFSSSNSPR 369 K+ E ++K++ + + Sbjct 945 ALRQSGQKVPEPVQKMVDSFLEKVKAGK 972 >sp|Q4A127|HSDR_STAS1 Type I restriction enzyme SsaAORF53P endonuclease subunit OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41) OX=342451 GN=hsdR PE=3 SV=1 Length=930 Score = 136 bits (343), Expect = 5e-32, Method: Composition-based stats. Identities = 42/185 (23%), Positives = 72/185 (39%), Gaps = 18/185 (10%) Query 1 MELRSYQWEVIMPAL-----EGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVN 55 M +R YQ + + N IW TG+GKT + ++ E D KV+ LV+ Sbjct 239 MAMRPYQVHAVEALIHQATETSNNGYIWHTTGSGKTLTSFKASQVLSEQDDIKKVIFLVD 298 Query 56 RVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE 115 R L +Q EEF + G T + + + L L++ T + + A+ + Sbjct 299 RKDLDSQTEEEFNKFSKGSVDKTNNTAQLVKQLKDKSLP----LIVTTIQKMSKAIQNNA 354 Query 116 EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGA 175 E T + ++DECH + ++ ++ + Q G T +P Sbjct 355 EALDQYKTDKVVFIIDECHRSQFGDMHRIVRQHFNN---------AQYFGFTGTPRFEEN 405 Query 176 SKLDG 180 DG Sbjct 406 QSQDG 410 >sp|Q1E1N5|RRP3_COCIM ATP-dependent rRNA helicase RRP3 OS=Coccidioides immitis (strain RS) OX=246410 GN=RRP3 PE=3 SV=1 Length=474 Score = 133 bits (335), Expect = 5e-32, Method: Composition-based stats. Identities = 73/379 (19%), Positives = 129/379 (34%), Gaps = 48/379 (13%) Query 193 DTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRK 252 +T + P LQ +P + L P +L ++ Q + + Sbjct 93 ETGSGKTAAFALPILQALMDKPQSMFGLVLA----PTRELAYQISQQFEALGSLISVRCA 148 Query 253 F--GTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFY 310 G Q + L + + R+ HL L +D L D Sbjct 149 VIVGGMDMVSQAIALGKKPHIIVATPGRLLD-HLENTKGFSLRSLKYLVMDEADRLLDLD 207 Query 311 HREHVTKTQILCAERRLLALFD----DRKNELAHLATHGPE-----NPKLEMLEKILQRQ 361 + K + + R LF + L + P + K + + +LQ Sbjct 208 FGPILDKILKVLPKERRTYLFSATMSSKVESLQRASLSNPLRVSVSSNKYQTVSTLLQNC 267 Query 362 FSSSNSPR---------------GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA 406 + + IIFTRT L + L+ +G Sbjct 268 LIIPHKHKDIYLIYLLNEFPGQSVIIFTRTVNETQRLAILLRA--------------LGF 313 Query 407 GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV 466 G ++Q + + KF+ + N+LVAT VA GLDIP ++V+ Y L ++ + + Sbjct 314 GAIPLHGQLSQSARLGALGKFRSRSRNILVATDVAARGLDIPSVDLVLNYDLPSDSKTYI 373 Query 467 QARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDL 525 GR ARA +S AF + I AL +++ V+K + ++ + Sbjct 374 HRVGRTARAGKSGRAFSLVTQYDVEIWQRIEAALGKELDEY--KVEKEEVMVLSDRVGEA 431 Query 526 QQAALTKRAAQAAQRENQR 544 Q+ A+T+ R + Sbjct 432 QRHAITEMKELHENRGKKG 450 Score = 65.6 bits (158), Expect = 8e-10, Method: Composition-based stats. Identities = 71/427 (17%), Positives = 145/427 (34%), Gaps = 42/427 (10%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHL---VTQ 62 Q E I AL+G+++I TG+GKT A A + + ++ +VL L ++Q Sbjct 75 QAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMDKPQSMFGLVLAPTRELAYQISQ 134 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 E ++ R V DM +A L + +++ T L L + + L Sbjct 135 QFEALGSLISVRCAVIVGGMDMVSQAI--ALGKKPHIIVATPGRLLDHLENTKG---FSL 189 Query 123 TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAI 182 +V+DE D + I+ + L++ + + +A+ + S ++ Sbjct 190 RSLKYLVMDEADRLL-DLDFGPILDKILKVLPKERRTYL----FSATMSSKVESLQRASL 244 Query 183 NHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHD 242 ++ L++ + Q LQ P K ++ + F + + + Sbjct 245 SNPLRV-----SVSSNKYQTVSTLLQNCLIIPHKHKDIYLIYLLNEFPGQSVIIFTRTVN 299 Query 243 HLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDA 302 + + + +LS++A L L + R + ++ D + +VD Sbjct 300 ETQRLAILLRALGFGAIPLHGQLSQSARLGALGKFRSRSRNILVATDVAARGLDIPSVDL 359 Query 303 LAAL------QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEK 356 + + + HR V +T R +L E+ L K Sbjct 360 VLNYDLPSDSKTYIHR--VGRTARAGKSGRAFSLVTQYDVEIWQRIE--------AALGK 409 Query 357 ILQRQFSSSNSPRGIIFTRTRQSAHS--LLLW--LQQQQGLQTVDIRAQLLIGAGNSSQS 412 L ++ + A + L + +G + +R IG G Sbjct 410 ELDEY--KVEKEEVMVLSDRVGEAQRHAITEMKELHENRGKKGATLR-NRRIGKGAKRSR 466 Query 413 THMTQRD 419 M + + Sbjct 467 DEMDREE 473 >sp|Q5BDW4|PRP5_EMENI Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=prp5 PE=3 SV=1 Length=1173 Score = 137 bits (344), Expect = 5e-32, Method: Composition-based stats. Identities = 66/368 (18%), Positives = 128/368 (35%), Gaps = 47/368 (13%) Query 212 QQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAA 269 Q+P + P +L ++ L+ L +G + Q+ +L A Sbjct 606 QRPLENMEGPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAELKRGA 665 Query 270 ALAGLQEQRVYAL--------HLRRYNDALLIHDTVRAVD---------ALAALQDFYH- 311 + R+ L R +++ + R D L+ ++ Sbjct 666 EIIVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILSNVRPDRQT 725 Query 312 ----------REHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQ 361 E + + + ++ E+ + E K L ++L Sbjct 726 VLFSATFPRNMEALARKTLTKPIEIVVGGRSVVAPEITQIVEVCNEEKKFVRLLELLGNL 785 Query 362 FS--SSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRD 419 +S + R +IF +++A +LL L ++ G S Q D Sbjct 786 YSTDENEDARSLIFVDRQEAADTLLRELMRK--------------GYPCMSIHGGKDQID 831 Query 420 QQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSV 478 + I+ F+ G +L+ATSVA GLD+ +VV Y + V GR RA + Sbjct 832 RDSTIEDFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTG 891 Query 479 YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA 538 A +E I +AL+ ++ AVQK+ + + ++A+ + + Sbjct 892 TAVTFLTEDQERYSVDIAKALKQSGQEVPEAVQKLVDSFLEKVKAGKEKASNSGFGGKGL 951 Query 539 QRENQRQQ 546 +R +Q + Sbjct 952 ERLDQERD 959 Score = 58.7 bits (140), Expect = 1e-07, Method: Composition-based stats. Identities = 56/327 (17%), Positives = 110/327 (34%), Gaps = 35/327 (11%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYV-AKRH------LETVDGAKVVVLVNRVHL 59 Q + I + G+++I TG+GKT A + RH LE ++G +++ L Sbjct 568 QAQAIPAIMSGRDVIGVAKTGSGKTM-AFLIPMFRHIKDQRPLENMEGPIGLIMTPTREL 626 Query 60 VTQHGEEFRRMLDG--RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE 117 TQ ++ + L V G L R ++++CT + L + Sbjct 627 ATQIHKDCKPFLKALNLRAVCAYGGAPIKDQI-AELKRGAEIIVCTPGRMIDLLAANAGR 685 Query 118 EHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQ-----PLPQVLGLTASPGT 172 L + +V+DE +M ++ R P+ + A Sbjct 686 -VTNLRRVTYVVLDEADRMFDMGFEPQVMKILSNVRPDRQTVLFSATFPR--NMEALARK 742 Query 173 GGASKLD---GAINHVLQLCANLDTWCIMSPQNCC-PQLQEH---SQQPCKQYNLCHRRS 225 ++ G + V + C + +L + + + +L Sbjct 743 TLTKPIEIVVGGRSVVAPEITQIVEVCNEEKKFVRLLELLGNLYSTDENEDARSLIFVDR 802 Query 226 QDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR 285 Q+ LL++LM + + + + + + +A L V A L Sbjct 803 QEAADTLLRELMRKGYPCMSIHGGKDQIDRDSTIE----DFKAGIFPVLIATSVAARGLD 858 Query 286 RYNDALLIHDTVRAVDALAALQDFYHR 312 L+++ DA L+D+ HR Sbjct 859 VKQLKLVVN-----YDAPNHLEDYVHR 880 >sp|Q0D1K3|PRP5_ASPTN Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=prp5 PE=3 SV=1 Length=1181 Score = 136 bits (343), Expect = 5e-32, Method: Composition-based stats. Identities = 66/368 (18%), Positives = 128/368 (35%), Gaps = 47/368 (13%) Query 212 QQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAA 269 Q+P + P +L ++ L+ L +G + Q+ +L A Sbjct 614 QRPLENMEGPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAELKRGA 673 Query 270 ALAGLQEQRVYAL--------HLRRYNDALLIHDTVRAVD-------------------- 301 + R+ L R +++ + R D Sbjct 674 EIVVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANVRPDRQT 733 Query 302 ALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQ 361 L + + E + + + ++ E+ + E+ K L ++L Sbjct 734 VLFSATFPRNMEALARKTLNKPVEIVVGGKSVVAPEITQIVEVRNEDKKFVRLLELLGNL 793 Query 362 FSS--SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRD 419 +SS + R +IF +++A +LL L ++ G S Q D Sbjct 794 YSSDENEDARALIFVERQEAADTLLRELMRK--------------GYPCMSIHGGKDQID 839 Query 420 QQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSV 478 + I+ F+ G +L+ATSVA GLD+ +VV Y + V GR RA + Sbjct 840 RDSTIEDFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTG 899 Query 479 YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA 538 A +E I +AL+ ++ VQ+M + + ++A+ + + Sbjct 900 TAVTFLTEDQERFSVDIAKALKQSGQKVPEPVQQMVDSFLEKVKAGKEKASASGFGGKGL 959 Query 539 QRENQRQQ 546 +R +Q + Sbjct 960 ERLDQERD 967 Score = 57.5 bits (137), Expect = 4e-07, Method: Composition-based stats. Identities = 30/138 (22%), Positives = 54/138 (39%), Gaps = 12/138 (9%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYV-AKRH------LETVDGAKVVVLVNRVHL 59 Q + I + G+++I TG+GKT A + RH LE ++G +++ L Sbjct 576 QSQAIPAIMSGRDVIGVAKTGSGKT-VAFLIPMFRHIKDQRPLENMEGPIGLIMTPTREL 634 Query 60 VTQHGEEFRRMLDG--RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE 117 TQ ++ + L V G L R ++++CT + L + Sbjct 635 ATQIHKDCKPFLKALNLRAVCAYGGAPIKDQI-AELKRGAEIVVCTPGRMIDLLAANAGR 693 Query 118 EHVELTVFSLIVVDECHH 135 L + +V+DE Sbjct 694 -VTNLRRVTYVVLDEADR 710 >sp|G0SFM2|DBP2_CHATD ATP-dependent RNA helicase DBP2 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) OX=759272 GN=DBP2 PE=3 SV=2 Length=556 Score = 134 bits (337), Expect = 5e-32, Method: Composition-based stats. Identities = 59/342 (17%), Positives = 117/342 (34%), Gaps = 50/342 (15%) Query 193 DTWCIMSPQNCCPQLQEHSQQPCKQY-NLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSR 251 +T + C P + + QP + P +L ++ +I+ + + Sbjct 174 ETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQQEINKFGKSSRIRN 233 Query 252 K--FGTQMYEQQVVKLSEAAALAGLQEQRVY------ALHLRRYNDALLIHDTVRAVDA- 302 +G Q+ L + R+ +LRR L++ + R +D Sbjct 234 TCIYGGVPKGPQIRDLQRGVEVCIATPGRLIDMLESGKTNLRR-VTYLVLDEADRMLDMG 292 Query 303 --------------------LAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLA 342 +A R + + +L + + + Sbjct 293 FEPQIRKIISQIRPDRQTLMWSATWPKEVRNLAADFLTDFIQVNIGSLDLAANHRITQIV 352 Query 343 THGPENPKLEMLEKILQR-QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQ 401 E+ K + L K L++ S + +IF T++ A + +L+Q Sbjct 353 EVISESEKRDRLIKHLEKIMDSRDTQNKCLIFVGTKRVADDITRFLRQD----------- 401 Query 402 LLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN 461 G S Q ++ V+ +F+ G ++VAT VA G+D+ + V+ Y N Sbjct 402 ---GWPALSIHGDKQQNERDWVLDQFKTGKSPIMVATDVASRGIDVRNITHVINYDYPNN 458 Query 462 EISMVQAR---GRARADQSVYAFVATEGSRELKRELINEALE 500 + GRA A + F TE +++ R+L++ E Sbjct 459 SEDYIHRIGRTGRAGAKGTAITFFTTENAKQ-ARDLVSVLQE 499 Score = 53.3 bits (126), Expect = 5e-06, Method: Composition-based stats. Identities = 32/129 (25%), Positives = 49/129 (38%), Gaps = 11/129 (9%) Query 14 ALEGKNIIIWLPTGAGKTRA----AAYVA--KRHLETVDGAKVVVLVNRVHLVTQHGEEF 67 AL G++++ TG+GKT A + L DG V+VL L Q +E Sbjct 163 ALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQQEI 222 Query 68 RRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS 126 + R T + G + L R ++ I T L L S + L + Sbjct 223 NKFGKSSRIRNTCIYGGVPKGPQIRDLQRGVEVCIATPGRLIDMLESGKTN----LRRVT 278 Query 127 LIVVDECHH 135 +V+DE Sbjct 279 YLVLDEADR 287 >sp|Q9PA24|RHLB_XYLFA ATP-dependent RNA helicase RhlB OS=Xylella fastidiosa (strain 9a5c) OX=160492 GN=rhlB PE=3 SV=2 Length=543 Score = 134 bits (337), Expect = 5e-32, Method: Composition-based stats. Identities = 70/381 (18%), Positives = 120/381 (31%), Gaps = 59/381 (15%) Query 165 GLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRR 224 GLT + G + + V ++ L + + L +R Sbjct 23 GLTRA-GFTLCTPIQALTLPVALAGRDIAGQAQTGTGKTLAFLVVVVNRLLSRPGLVNRN 81 Query 225 SQDPFGDLLKKL----MDQIHDHLEM-----PELSRKFGTQMYEQQVVKLSEAAALAGLQ 275 +DP +L + +D ++ + +G Y++Q L + A + Sbjct 82 PEDPRALILAPTRELAIQIYNDAVKFGGNLGLRFALIYGGVDYDKQREMLRKGADVVIAT 141 Query 276 EQRVYALHLR------RYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLA 329 R+ + R + ++ + R D L ++D + A Sbjct 142 PGRLIDYLKQHEVVSLRVCEICVLDEADRMFD-LGFIKDIRFILRRLPERCSRQTLLFSA 200 Query 330 LFDDRKNELAHLATHGPE-------------------NPKLEMLEKILQRQFSSSNSPRG 370 R ELA+ + PE P E +L S S R Sbjct 201 TLSHRVLELAYEYMNEPEKLVAETETVTTTRVRQRIYFPAEEEKIPLLLGLLSRSEGMRT 260 Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 ++F T+ + L + G S + QR ++ ++ +FQ G Sbjct 261 MVFVNTKVFVEGVARALDEA--------------GYRVGVLSGDVPQRKRETLLNRFQKG 306 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA---RADQSVYAFVATEGS 487 L +LVAT VA GL I N V Y L + V GR AD +F + Sbjct 307 QLEILVATDVAARGLHIDGVNYVYNYDLPFDAEDYVHRIGRTARLGADGDAISFACERYA 366 Query 488 RELKRELINEALETLMEQAVA 508 L +E +EQ + Sbjct 367 MSLP------DIEAYIEQKIP 381 Score = 49.8 bits (117), Expect = 6e-05, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 46/131 (35%), Gaps = 12/131 (9%) Query 14 ALEGKNIIIWLPTGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGE 65 AL G++I TG GKT A V L + + ++L L Q Sbjct 43 ALAGRDIAGQAQTGTGKTLAFLVVVVNRLLSRPGLVNRNPEDPRALILAPTRELAIQIYN 102 Query 66 -EFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 + + + G + L + D++I T L L ++ E V L V Sbjct 103 DAVKFGGNLGLRFALIYGGVDYDKQREMLRKGADVVIATPGRLIDYL---KQHEVVSLRV 159 Query 125 FSLIVVDECHH 135 + V+DE Sbjct 160 CEICVLDEADR 170 >sp|A4RN46|PRP5_PYRO7 Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Pyricularia oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 GN=PRP5 PE=3 SV=1 Length=1012 Score = 136 bits (342), Expect = 6e-32, Method: Composition-based stats. Identities = 66/344 (19%), Positives = 117/344 (34%), Gaps = 48/344 (14%) Query 212 QQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAA 269 Q+P K P +L ++ L+ L +G + Q+ L A Sbjct 443 QEPVKDNEGPIGLILTPTRELAVQIFRDCKPFLKTLGLRAVCAYGGPPIKDQIADLKRGA 502 Query 270 ALAGLQEQRVYAL---------HLRRYNDALLIHDTVRAVD---------ALAALQD--- 308 + R+ L LRR +++ + R D A ++ Sbjct 503 EIVVATTGRMIDLLAANQGRVVSLRR-TTYIVLDEADRMFDMGFEPQVMKIFANVRPDRQ 561 Query 309 -FYHREHVTKTQILCAERRLLALFDDRK-------NELAHLATHGPENPKLEMLEKILQR 360 + K ++ L + +E+ + E K L ++L Sbjct 562 TVLFSATMPKIMDALVKKVLKNPVEIEVGGKSVVASEITQIVEIRDEKSKFNRLLELLGE 621 Query 361 QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ 420 + + R +IF ++ A LL L ++ G G S Q D+ Sbjct 622 LYKDDDDVRSLIFVERQEKADELLRELLRK--------------GYGCMSLHGGKDQVDR 667 Query 421 QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVY 479 I F+ G +++ATSVA GLD+ +VV Y + V GR RA + Sbjct 668 DSTISDFKSGVCPVMIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGT 727 Query 480 AFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIR 523 A +E I +ALE + + +M +A ++ K++ Sbjct 728 AVTFVTEEQENCAIGIAKALEQSGQPVPEKLIEMRKA-FREKVK 770 Score = 54.0 bits (128), Expect = 4e-06, Method: Composition-based stats. Identities = 51/322 (16%), Positives = 112/322 (35%), Gaps = 27/322 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK------VVVLVNRVHLV 60 Q + + + G++++ TG+GKT A RH++ + K ++L L Sbjct 405 QMQALPVIMSGRDVVGVAKTGSGKTMAFLLPMFRHIKDQEPVKDNEGPIGLILTPTRELA 464 Query 61 TQHGEEFRRMLD--GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEE 118 Q + + L G V G L R ++++ T + L + + Sbjct 465 VQIFRDCKPFLKTLGLRAVCAYGGPPIKDQI-ADLKRGAEIVVATTGRMIDLLAANQGR- 522 Query 119 HVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQ-----PLPQVLGLTASPGTG 173 V L + IV+DE +M + ++ R +P+++ Sbjct 523 VVSLRRTTYIVLDEADRMFDMGFEPQVMKIFANVRPDRQTVLFSATMPKIMDALVKKVLK 582 Query 174 GASKLDGAINHVL--QLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYN-LCHRRSQDPFG 230 +++ V+ ++ ++ S N +L + L Q+ Sbjct 583 NPVEIEVGGKSVVASEITQIVEIRDEKSKFNRLLELLGELYKDDDDVRSLIFVERQEKAD 642 Query 231 DLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDA 290 +LL++L+ + + + + Q+ + ++ + V A L Sbjct 643 ELLRELLRKGYGCMSLHGGK----DQVDRDSTISDFKSGVCPVMIATSVAARGLDVKQLK 698 Query 291 LLIHDTVRAVDALAALQDFYHR 312 L+++ DA L+D+ HR Sbjct 699 LVVN-----YDAPNHLEDYVHR 715 >sp|Q1DZK8|DBP3_COCIM ATP-dependent RNA helicase DBP3 OS=Coccidioides immitis (strain RS) OX=246410 GN=DBP3 PE=3 SV=2 Length=515 Score = 133 bits (335), Expect = 6e-32, Method: Composition-based stats. Identities = 67/355 (19%), Positives = 121/355 (34%), Gaps = 69/355 (19%) Query 228 PFGDLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEA-------AALAGLQEQR 278 P +L ++ DQ+ ++ +G + Q ++ A L Q + Sbjct 180 PTRELAVQIYDQLLRFSSAVDVGIACIYGGSPKDHQRREIRNASVVIATPGRLKDFQADQ 239 Query 279 VYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRK--- 335 L +Y L++ + R +D + F I ++R +F Sbjct 240 TINLSGVKY---LVLDEADRMLD-----KGFEQDIQDIVKGIPSTQKRQTIMFTATWPIG 291 Query 336 -NELAHLATHGPE-------------------------NPKLEMLEKILQRQ-FSSSNSP 368 LA T P K L ++L+R N+ Sbjct 292 VRNLAASFTKNPVTVTIGDSSDIRANKRIKQMVEVLQPYEKDSRLLELLRRYQDGGKNNH 351 Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 R ++F ++ A + ++ + G + M+Q ++ ++ F+ Sbjct 352 RILVFCLYKKEAMRVERFIGSK--------------GFKVAGIHGDMSQTERFRSLEAFK 397 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEG 486 G+++LLVAT VA GLDIP +V+ V GR RA A + TE Sbjct 398 SGSISLLVATDVAARGLDIPAVKLVLNVTFPLTIEDYVHRIGRTGRAGAEGLAITLFTER 457 Query 487 SRELKRELIN------EALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAA 535 + L LIN + + + + A V+K Y A R++ + R Sbjct 458 DKALSGPLINVLRAADQDVPESLLKFGATVKKKQHESYGAFFREMDTTKVASRIK 512 Score = 43.6 bits (101), Expect = 0.006, Method: Composition-based stats. Identities = 24/129 (19%), Positives = 47/129 (36%), Gaps = 12/129 (9%) Query 14 ALEGKNIIIWLPTGAGKTRAAAYV--AKRHLETVDGAK-----VVVLVNRVHLVTQHGEE 66 A G+++I TG+GKT A + +R LE + +++ L Q ++ Sbjct 133 AFAGRDLIGVAETGSGKTL-AFGLPCLRRVLELNNSETSCKPCALIITPTRELAVQIYDQ 191 Query 67 FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS 126 R P+ R ++I T L+ + ++ + L+ Sbjct 192 LLRFSSAVDVGIACIYGGSPKDHQRREIRNASVVIATPGRLKD----FQADQTINLSGVK 247 Query 127 LIVVDECHH 135 +V+DE Sbjct 248 YLVLDEADR 256 >sp|Q62095|DDX3Y_MOUSE ATP-dependent RNA helicase DDX3Y OS=Mus musculus OX=10090 GN=Ddx3y PE=1 SV=2 Length=658 Score = 135 bits (339), Expect = 7e-32, Method: Composition-based stats. Identities = 57/283 (20%), Positives = 105/283 (37%), Gaps = 48/283 (17%) Query 253 FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND-----ALLIHDTVRAVDALAALQ 307 +G QQ+ L L R+ + R L++ + R +D Q Sbjct 300 YGGADTVQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 359 Query 308 DFYHREHVTKTQILCAERRLLALFDD-RKNELAHLA-----------------THGPENP 349 R V + + R +F E+ LA T Sbjct 360 ---IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQ 416 Query 350 KLEMLEKILQRQF------SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLL 403 K+ +E++ +R F ++ ++F T++ A SL +L Q++ Sbjct 417 KVVWVEELDKRSFLLDLLNATGKDSLTLVFVETKKGADSLENFLFQER------------ 464 Query 404 IGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI 463 +S +Q+D++E + +F+ G +LVAT+VA GLDI + V+ + L ++ Sbjct 465 --YACTSIHGDRSQKDREEALHQFRSGRKPILVATAVAARGLDISNVKHVINFDLPSDIE 522 Query 464 SMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLME 504 V GR R A E + + ++L++ +E E Sbjct 523 EYVHRIGRTGRVGNLGLATSFFNERNLNITKDLLDLLVEAKQE 565 Score = 49.0 bits (115), Expect = 1e-04, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 45/150 (30%), Gaps = 26/150 (17%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT---------RA-------AAYVAKRHLETVDGAK- 49 Q I E ++++ TG+GKT + A K + + Sbjct 206 QKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAMKENGRYGRRKQY 265 Query 50 --VVVLVNRVHLVTQHGEEFRRML--DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAE 105 +VL L Q EE R+ G + L R LL+ T Sbjct 266 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADTVQQIRD-LERGCHLLVATPG 324 Query 106 LLQMALTSPEEEEHVELTVFSLIVVDECHH 135 L + E + L +V+DE Sbjct 325 RLVDMM----ERGKIGLDFCKYLVLDEADR 350 >sp|Q9LUW5|RH53_ARATH DEAD-box ATP-dependent RNA helicase 53, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RH53 PE=1 SV=1 Length=616 Score = 134 bits (338), Expect = 7e-32, Method: Composition-based stats. Identities = 62/321 (19%), Positives = 116/321 (36%), Gaps = 47/321 (15%) Query 228 PFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRY 287 P +L +++ + + + +G QQ+ +L +A RV L R Sbjct 186 PTRELARQVEKEFRESAPSLDTICLYGGTPIGQQMRQLDYGVDVAVGTPGRVIDLMKR-- 243 Query 288 NDALLIHDTVRAV-DALAALQDFYHREHVTKTQILCAERRLLALFD----DRKNELAHLA 342 AL + + V D + E V E+R +F L Sbjct 244 -GALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSMMFSATMPSWIRSLTKKY 302 Query 343 THGPE--------NPKLEMLEK---ILQRQF-----------SSSNSPRGIIFTRTRQSA 380 + P + KL I+ + + + I+FT+T++ A Sbjct 303 LNNPLTVDLVGDSDQKLADGITTYSIIADSYGRASIIGPLVTEHAKGGKCIVFTQTKRDA 362 Query 381 HSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSV 440 L L + + + L G ++Q ++ + F+DG N+LVAT V Sbjct 363 DRLSYALAR-------SFKCEALHG--------DISQSQRERTLAGFRDGHFNILVATDV 407 Query 441 AEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEAL 499 A GLD+P+ ++++ Y L N + V GR RA + A + + ++I + Sbjct 408 AARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQSRAVKIIEREV 467 Query 500 -ETLMEQAVAAVQKMDQAEYQ 519 E AV++ + ++ Sbjct 468 GSRFTELPSIAVERGSASMFE 488 Score = 54.4 bits (129), Expect = 3e-06, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 51/134 (38%), Gaps = 12/134 (9%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTR-----AAAYVAKRHLETVDGAK--VVVLVNRVHL 59 Q V+ PA+EG+++I TG GKT + K + + G +VL L Sbjct 131 QKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTREL 190 Query 60 VTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 Q +EFR T+ G + L D+ + T + + + Sbjct 191 ARQVEKEFRESAPSLDTICLYGGTPIGQQMR-QLDYGVDVAVGTPGRVIDLM----KRGA 245 Query 120 VELTVFSLIVVDEC 133 + L+ +V+DE Sbjct 246 LNLSEVQFVVLDEA 259 >sp|Q8NYL9|HSDR_STAAW Type I restriction enzyme SauMW2ORF169P endonuclease subunit OS=Staphylococcus aureus (strain MW2) OX=196620 GN=hsdR PE=3 SV=1 Length=929 Score = 136 bits (341), Expect = 8e-32, Method: Composition-based stats. Identities = 41/185 (22%), Positives = 73/185 (39%), Gaps = 18/185 (10%) Query 1 MELRSYQWEVIMPALE-----GKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVN 55 M +R YQ + ++ G N +W TG+GKT + ++ + D KV+ LV+ Sbjct 239 MAMRPYQVYAVEALIQQATETGNNGYVWHTTGSGKTLTSFKASQILSQQDDIKKVIFLVD 298 Query 56 RVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE 115 R L +Q EEF + G T + + + L L++ T + + A+ Sbjct 299 RKDLDSQTEEEFNKFAKGAVDKTFNTSQLVRQLNDKSLP----LIVTTIQKMAKAIQGNA 354 Query 116 EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGA 175 T + ++DECH + ++ ++ + Q G T +P Sbjct 355 HLLEQYKTNKVVFIIDECHRSQFGDMHRLVKQHFKN---------AQYFGFTGTPRFPEN 405 Query 176 SKLDG 180 S DG Sbjct 406 SSQDG 410 >sp|Q6GCT1|HSDR_STAAS Type I restriction enzyme SauMSSORF170P endonuclease subunit OS=Staphylococcus aureus (strain MSSA476) OX=282459 GN=hsdR PE=3 SV=1 Length=929 Score = 136 bits (341), Expect = 8e-32, Method: Composition-based stats. Identities = 41/185 (22%), Positives = 73/185 (39%), Gaps = 18/185 (10%) Query 1 MELRSYQWEVIMPALE-----GKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVN 55 M +R YQ + ++ G N +W TG+GKT + ++ + D KV+ LV+ Sbjct 239 MAMRPYQVYAVEALIQQATETGNNGYVWHTTGSGKTLTSFKASQILSQQDDIKKVIFLVD 298 Query 56 RVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE 115 R L +Q EEF + G T + + + L L++ T + + A+ Sbjct 299 RKDLDSQTEEEFNKFAKGAVDKTFNTSQLVRQLNDKSLP----LIVTTIQKMAKAIQGNA 354 Query 116 EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGA 175 T + ++DECH + ++ ++ + Q G T +P Sbjct 355 HLLEQYKTNKVVFIIDECHRSQFGDMHRLVKQHFKN---------AQYFGFTGTPRFPEN 405 Query 176 SKLDG 180 S DG Sbjct 406 SSQDG 410 >sp|Q6GKB1|HSDR_STAAR Type I restriction enzyme SauMRSORF196P endonuclease subunit OS=Staphylococcus aureus (strain MRSA252) OX=282458 GN=hsdR PE=3 SV=1 Length=929 Score = 136 bits (341), Expect = 8e-32, Method: Composition-based stats. Identities = 41/185 (22%), Positives = 73/185 (39%), Gaps = 18/185 (10%) Query 1 MELRSYQWEVIMPALE-----GKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVN 55 M +R YQ + ++ G N +W TG+GKT + ++ + D KV+ LV+ Sbjct 239 MAMRPYQVYAVEALIQQATETGNNGYVWHTTGSGKTLTSFKASQILSQQDDIKKVIFLVD 298 Query 56 RVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE 115 R L +Q EEF + G T + + + L L++ T + + A+ Sbjct 299 RKDLDSQTEEEFNKFAKGAVDKTFNTSQLVRQLNDKSLP----LIVTTIQKMAKAIQGNA 354 Query 116 EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGA 175 T + ++DECH + ++ ++ + Q G T +P Sbjct 355 HLLEQYKTNKVVFIIDECHRSQFGDMHRLVKQHFKN---------AQYFGFTGTPRFPEN 405 Query 176 SKLDG 180 S DG Sbjct 406 SSQDG 410 >sp|Q0UY62|DBP3_PHANO ATP-dependent RNA helicase DBP3 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) OX=321614 GN=DBP3 PE=3 SV=1 Length=592 Score = 134 bits (337), Expect = 8e-32, Method: Composition-based stats. Identities = 43/207 (21%), Positives = 79/207 (38%), Gaps = 23/207 (11%) Query 337 ELAHLATHGPENPKLEMLEKILQRQFSSSN-SPRGIIFTRTRQSAHSLLLWLQQQQGLQT 395 + L + K + L ++L++ S N R ++F ++ A + +++ Sbjct 397 RIKQLVEVLDPHAKEQRLLQLLKQYQSGKNKDDRILVFCLYKKEAMRIENFIR------- 449 Query 396 VDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVR 455 + G ++Q + + F++G + LLVAT VA GLDIP +V+ Sbjct 450 -------MKGFRVGGIHGDLSQEKRSASLAAFKEGQVPLLVATDVAARGLDIPAVKLVIN 502 Query 456 YGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELI------NEALETLMEQAV 507 V GR RA + A TE + L LI N+ + + + Sbjct 503 VTFPLTAEDYVHRIGRTGRAGKEGLAITFFTEHDKGLSGSLINVLKAANQEVPEELLKFG 562 Query 508 AAVQKMDQAEYQAKIRDLQQAALTKRA 534 V+K + Y A +D+ + Sbjct 563 TTVKKKEHGAYGAFYKDVDNTKAATKI 589 Score = 42.9 bits (99), Expect = 0.010, Method: Composition-based stats. Identities = 21/127 (17%), Positives = 45/127 (35%), Gaps = 11/127 (9%) Query 15 LEGKNIIIWLPTGAGKTRA----AAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGEEFRR 69 L G++++ TG+GKT A + K V++ L Q ++ Sbjct 213 LSGRDMVGVAETGSGKTLAFGVPCVRAILSLPKDKRKGIKAVIVSPTRELAVQIYDQLVA 272 Query 70 ML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLI 128 + +V + G + + H +++ T L + + +L+ + Sbjct 273 LAHPAGLSVVCVYGGVPKDPQVAACRKAH-IVVATPGRLNDLI----GDGSADLSNADYV 327 Query 129 VVDECHH 135 V+DE Sbjct 328 VLDEADR 334 >sp|Q7A801|HSDR_STAAN Type I restriction enzyme SauN315I endonuclease subunit OS=Staphylococcus aureus (strain N315) OX=158879 GN=hsdR PE=1 SV=1 Length=929 Score = 136 bits (341), Expect = 8e-32, Method: Composition-based stats. Identities = 41/185 (22%), Positives = 73/185 (39%), Gaps = 18/185 (10%) Query 1 MELRSYQWEVIMPALE-----GKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVN 55 M +R YQ + ++ G N +W TG+GKT + ++ + D KV+ LV+ Sbjct 239 MAMRPYQVYAVEALIQQATETGNNGYVWHTTGSGKTLTSFKASQILSQQDDIKKVIFLVD 298 Query 56 RVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE 115 R L +Q EEF + G T + + + L L++ T + + A+ Sbjct 299 RKDLDSQTEEEFNKFAKGAVDKTFNTSQLVRQLNDKSLP----LIVTTIQKMAKAIQGNA 354 Query 116 EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGA 175 T + ++DECH + ++ ++ + Q G T +P Sbjct 355 HLLEQYKTNKVVFIIDECHRSQFGDMHRLVKQHFKN---------AQYFGFTGTPRFPEN 405 Query 176 SKLDG 180 S DG Sbjct 406 SSQDG 410 >sp|Q99X26|HSDR_STAAM Type I restriction enzyme SauMu50ORF195P endonuclease subunit OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) OX=158878 GN=hsdR PE=3 SV=1 Length=929 Score = 136 bits (341), Expect = 8e-32, Method: Composition-based stats. Identities = 41/185 (22%), Positives = 73/185 (39%), Gaps = 18/185 (10%) Query 1 MELRSYQWEVIMPALE-----GKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVN 55 M +R YQ + ++ G N +W TG+GKT + ++ + D KV+ LV+ Sbjct 239 MAMRPYQVYAVEALIQQATETGNNGYVWHTTGSGKTLTSFKASQILSQQDDIKKVIFLVD 298 Query 56 RVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE 115 R L +Q EEF + G T + + + L L++ T + + A+ Sbjct 299 RKDLDSQTEEEFNKFAKGAVDKTFNTSQLVRQLNDKSLP----LIVTTIQKMAKAIQGNA 354 Query 116 EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGA 175 T + ++DECH + ++ ++ + Q G T +P Sbjct 355 HLLEQYKTNKVVFIIDECHRSQFGDMHRLVKQHFKN---------AQYFGFTGTPRFPEN 405 Query 176 SKLDG 180 S DG Sbjct 406 SSQDG 410 >sp|A7ENE0|PRP5_SCLS1 Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 GN=prp5 PE=3 SV=1 Length=1114 Score = 136 bits (342), Expect = 9e-32, Method: Composition-based stats. Identities = 59/340 (17%), Positives = 114/340 (34%), Gaps = 45/340 (13%) Query 212 QQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAA 269 Q+P K + P +L ++ + L+ L +G + + Q+ L A Sbjct 548 QRPLKNSDGPIGLIMTPTRELATQIHKECKPFLKAMGLRAVCAYGGAIIKDQIADLKRGA 607 Query 270 ALAGLQEQRVYAL--------HLRRYNDALLIHDTVRAVD-------------ALAALQD 308 + R+ L + +++ + R D Q Sbjct 608 EIIVCTPGRMIELLAANSGRVTNLQRVTYVVLDEADRMFDMGFEPQVMKVFNNIRPNRQT 667 Query 309 FYHREHVTKTQILCAERRLLALFDDRK-------NELAHLATHGPENPKLEMLEKILQRQ 361 + + A++ L + + E+ + E K L ++L Sbjct 668 ILFSATMPRIMDALAKKTLQSPVEIVVGGRSVVAPEITQIVEVREEKEKFHRLLELLGEL 727 Query 362 FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ 421 +++ R +IF ++ A LL L ++ G S Q D+ Sbjct 728 YNADEDARTLIFVDRQEKADDLLKDLMRK--------------GYPCMSIHGGKDQVDRD 773 Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYA 480 I F+ G + +++ATSVA GLD+ +VV + + V GR RA + A Sbjct 774 STIDDFKAGVVPIMIATSVAARGLDVKQLKLVVNFDAPNHLEDYVHRAGRTGRAGNTGTA 833 Query 481 FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA 520 +E I +ALE ++ + +M ++ Sbjct 834 VTFITEEQEQYSVGIAKALEQSGQEVPERLNEMRKSYKDK 873 Score = 74.4 bits (181), Expect = 2e-12, Method: Composition-based stats. Identities = 62/328 (19%), Positives = 113/328 (34%), Gaps = 39/328 (12%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYV-AKRHLETVDGAKV------VVLVNRVHL 59 Q + I + G+++I TG+GKT A + RH+ K +++ L Sbjct 510 QMQAIPAIMSGRDVIGVAKTGSGKT-IAFLLPMFRHIRDQRPLKNSDGPIGLIMTPTREL 568 Query 60 VTQHGEEFRRMLD--GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE 117 TQ +E + L G V G + L R ++++CT + L + Sbjct 569 ATQIHKECKPFLKAMGLRAVCAYGGAIIKDQI-ADLKRGAEIIVCTPGRMIELLAANSGR 627 Query 118 EHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQ-----PLPQVLGLTA---- 168 L + +V+DE +M + ++ R +P+++ A Sbjct 628 -VTNLQRVTYVVLDEADRMFDMGFEPQVMKVFNNIRPNRQTILFSATMPRIMDALAKKTL 686 Query 169 -SP---GTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRR 224 SP GG S + I ++++ L E L Sbjct 687 QSPVEIVVGGRSVVAPEITQIVEV-----REEKEKFHRLLELLGELYNADEDARTLIFVD 741 Query 225 SQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHL 284 Q+ DLLK LM + + + + Q+ + +A + + V A L Sbjct 742 RQEKADDLLKDLMRKGYPCMSIHGGK----DQVDRDSTIDDFKAGVVPIMIATSVAARGL 797 Query 285 RRYNDALLIHDTVRAVDALAALQDFYHR 312 L+++ DA L+D+ HR Sbjct 798 DVKQLKLVVN-----FDAPNHLEDYVHR 820 >sp|P24784|DBP1_YEAST ATP-dependent RNA helicase DBP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DBP1 PE=1 SV=2 Length=617 Score = 134 bits (337), Expect = 9e-32, Method: Composition-based stats. Identities = 57/282 (20%), Positives = 98/282 (35%), Gaps = 47/282 (17%) Query 253 FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND-----ALLIHDTVRAVDALAALQ 307 +G Q+ ++ L R+ L R L++ + R +D Q Sbjct 272 YGGAPIGNQMREVDRGCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQ 331 Query 308 DFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGP------------ENPKL 351 R V + + E R +F LA EN Sbjct 332 ---IRHIVEECDMPSVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQ 388 Query 352 EML-------EKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI 404 +L + L S+ + +IF T++ A L +L Q + +A + Sbjct 389 RILYVDDMDKKSALLDLLSAEHKGLTLIFVETKRMADQLTDFLIMQ------NFKATAIH 442 Query 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 G TQ +++ + F+ ++LVAT+VA GLDIP+ V+ Y L ++ Sbjct 443 G--------DRTQAERERALSAFKANVADILVATAVAARGLDIPNVTHVINYDLPSDIDD 494 Query 465 MVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLME 504 V GR RA + A ++ + + L+ E E Sbjct 495 YVHRIGRTGRAGNTGVATSFFNSNNQNIVKGLMEILNEANQE 536 Score = 49.8 bits (117), Expect = 8e-05, Method: Composition-based stats. Identities = 30/138 (22%), Positives = 45/138 (33%), Gaps = 21/138 (15%) Query 15 LEGKNIIIWLPTGAGKT-------RAAAYV---------AKRHLETVDGAKVVVLVNRVH 58 +G++++ TG+GKT + A+ +VL Sbjct 189 TKGRDLMACAQTGSGKTGGFLFPLFTELFRSGPSPVPEKAQSFYSRKGYPSALVLAPTRE 248 Query 59 LVTQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE 117 L TQ EE R+ W + G + R DLL+ T L L E Sbjct 249 LATQIFEEARKFTYRSWVRPCVVYGGAPIGNQMREVDRGCDLLVATPGRLNDLL----ER 304 Query 118 EHVELTVFSLIVVDECHH 135 V L +V+DE Sbjct 305 GKVSLANIKYLVLDEADR 322 >sp|A6ZWD3|DBP1_YEAS7 ATP-dependent RNA helicase DBP1 OS=Saccharomyces cerevisiae (strain YJM789) OX=307796 GN=DBP1 PE=3 SV=1 Length=617 Score = 134 bits (337), Expect = 9e-32, Method: Composition-based stats. Identities = 57/282 (20%), Positives = 98/282 (35%), Gaps = 47/282 (17%) Query 253 FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND-----ALLIHDTVRAVDALAALQ 307 +G Q+ ++ L R+ L R L++ + R +D Q Sbjct 272 YGGAPIGNQMREVDRGCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQ 331 Query 308 DFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGP------------ENPKL 351 R V + + E R +F LA EN Sbjct 332 ---IRHIVEECDMPSVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQ 388 Query 352 EML-------EKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI 404 +L + L S+ + +IF T++ A L +L Q + +A + Sbjct 389 RILYVDDMDKKSALLDLLSAEHKGLTLIFVETKRMADQLTDFLIMQ------NFKATAIH 442 Query 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 G TQ +++ + F+ ++LVAT+VA GLDIP+ V+ Y L ++ Sbjct 443 G--------DRTQAERERALSAFKANVADILVATAVAARGLDIPNVTHVINYDLPSDIDD 494 Query 465 MVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLME 504 V GR RA + A ++ + + L+ E E Sbjct 495 YVHRIGRTGRAGNTGVATSFFNSNNQNIVKGLMEILNEANQE 536 Score = 49.8 bits (117), Expect = 8e-05, Method: Composition-based stats. Identities = 30/138 (22%), Positives = 45/138 (33%), Gaps = 21/138 (15%) Query 15 LEGKNIIIWLPTGAGKT-------RAAAYV---------AKRHLETVDGAKVVVLVNRVH 58 +G++++ TG+GKT + A+ +VL Sbjct 189 TKGRDLMACAQTGSGKTGGFLFPLFTELFRSGPSPVPEKAQSFYSRKGYPSALVLAPTRE 248 Query 59 LVTQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE 117 L TQ EE R+ W + G + R DLL+ T L L E Sbjct 249 LATQIFEEARKFTYRSWVRPCVVYGGAPIGNQMREVDRGCDLLVATPGRLNDLL----ER 304 Query 118 EHVELTVFSLIVVDECHH 135 V L +V+DE Sbjct 305 GKVSLANIKYLVLDEADR 322 >sp|Q879Y6|RHLB_XYLFT ATP-dependent RNA helicase RhlB OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) OX=183190 GN=rhlB PE=3 SV=1 Length=543 Score = 133 bits (335), Expect = 1e-31, Method: Composition-based stats. Identities = 72/400 (18%), Positives = 123/400 (31%), Gaps = 60/400 (15%) Query 147 SQYLELKLQRAQPLPQVL-GLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCP 205 L P +L GLT + G + + V ++ Sbjct 4 KPLTNLNFSSFDLHPALLTGLTRA-GFTLCTPIQALTLPVALAGRDIAGQAQTGTGKTLA 62 Query 206 QLQEHSQQPCKQYNLCHRRSQDPFGDLLKKL----MDQIHDHLEM-----PELSRKFGTQ 256 L + L +R +DP +L + +D ++ + +G Sbjct 63 FLVVVVNRLLSSPGLVNRNPEDPRALILAPTRELAIQIYNDAVKFGGNLGLRFALIYGGV 122 Query 257 MYEQQVVKLSEAAALAGLQEQRVYALHLR------RYNDALLIHDTVRAVDALAALQDFY 310 Y++Q L + A + R+ + R + ++ + R D L ++D Sbjct 123 DYDRQREMLRKGADVVIATPGRLIDYLKQHEVVSLRVCEICVLDEADRMFD-LGFIKDIR 181 Query 311 HREHVTKTQILCAERRLLALFDDRKNELAHLATHGPE-------------------NPKL 351 + A R ELA+ + PE P Sbjct 182 FILRRLPERCSRQTLLFSATLSHRVLELAYEYMNEPEKLVAETESVTTTRVRQRIYFPAE 241 Query 352 EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ 411 E +L S + R ++F T+ + L + G Sbjct 242 EEKIPLLLGLLSRNEGMRTMVFVNTKVFVEGVARALDEA--------------GYRVGVL 287 Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 S + QR ++ ++ +FQ G L +LVAT VA GL I N V Y L + V GR Sbjct 288 SGDVPQRKRETLLNRFQKGQLEILVATDVAARGLHIDGVNYVYNYDLPFDAEDYVHRIGR 347 Query 472 A---RADQSVYAFVATEGSRELKRELINEALETLMEQAVA 508 AD +F + L +E +EQ + Sbjct 348 TARLGADGDAISFACERYAMSLP------DIEAYIEQKIP 381 Score = 50.2 bits (118), Expect = 6e-05, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 46/131 (35%), Gaps = 12/131 (9%) Query 14 ALEGKNIIIWLPTGAGKTRAAAYVAKRHL--------ETVDGAKVVVLVNRVHLVTQHGE 65 AL G++I TG GKT A V L + + ++L L Q Sbjct 43 ALAGRDIAGQAQTGTGKTLAFLVVVVNRLLSSPGLVNRNPEDPRALILAPTRELAIQIYN 102 Query 66 -EFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 + + + G + L + D++I T L L ++ E V L V Sbjct 103 DAVKFGGNLGLRFALIYGGVDYDRQREMLRKGADVVIATPGRLIDYL---KQHEVVSLRV 159 Query 125 FSLIVVDECHH 135 + V+DE Sbjct 160 CEICVLDEADR 170 >sp|A1D405|RRP3_NEOFI ATP-dependent rRNA helicase rrp3 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=rrp3 PE=3 SV=1 Length=472 Score = 132 bits (332), Expect = 1e-31, Method: Composition-based stats. Identities = 65/356 (18%), Positives = 130/356 (37%), Gaps = 48/356 (13%) Query 214 PCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAG 273 P ++ +S + G + I ++M S G + + ++ + L Sbjct 128 PTRELAFQISKSFESLGSTINVRCAVIVGGMDMVSQSIALGKKPH---IIVATPGRLLDH 184 Query 274 LQEQRVYALHLRRYNDALLIHDTVRAVD-ALAALQDFYHREHVTKTQILCAERRLLALFD 332 L+ + ++L +Y L++ + R +D L D + + + A Sbjct 185 LENTKGFSLRTLKY---LVMDEADRLLDMDFGPLLDKILKVLPRERRTFL----FSATMS 237 Query 333 DRKNELAHLATHGPE-----NPKLEMLEKILQRQFSSSNSPR---------------GII 372 + L + P + K + + +LQ + + II Sbjct 238 SKVESLQRASLSNPLRVSVSSNKYQTVSTLLQSYLFLPHKHKDIYLVYLLNEFVGQSAII 297 Query 373 FTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTL 432 FTRT + L+ +G G ++Q + + KF+ + Sbjct 298 FTRTVHETQRISFLLRS--------------LGFGAIPLHGQLSQSARLGALGKFRSRSR 343 Query 433 NLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELK 491 ++LVAT VA GLDIP +VV+ + L T+ + V GR ARA +S A Sbjct 344 DILVATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQYDVEI 403 Query 492 RELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQF 547 I AL +++ ++K + ++ + Q+ A+ + +R + ++F Sbjct 404 WLRIEGALGKKLKEY--ELEKDEVMVLAERVGEAQRQAIVEMKNFDEKRGTKAKKF 457 Score = 64.0 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 66/424 (16%), Positives = 136/424 (32%), Gaps = 42/424 (10%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKV-VVLVNRVHLVTQHGE 65 Q E I AL+G+++I TG+GKT A A + L + ++L L Q + Sbjct 79 QAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMEKPQSFFGLILAPTRELAFQISK 138 Query 66 EFRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 F + + G M + L + +++ T L L + + L Sbjct 139 SFESLGSTINVRCAVIVGGMDMVSQSIALGKKPHIIVATPGRLLDHLENTKG---FSLRT 195 Query 125 FSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLP---QVLGLTASPGTGGASKLDGA 181 +V+DE ++ + L + + LP + +A+ + S + Sbjct 196 LKYLVMDEADR--------LLDMDFGPLLDKILKVLPRERRTFLFSATMSSKVESLQRAS 247 Query 182 INHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIH 241 +++ L++ + + + +S H + L + G +H Sbjct 248 LSNPLRVSVSSNKYQTVSTLLQSYLFLPHKHKDIYLVYL----LNEFVGQSAIIFTRTVH 303 Query 242 DHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVD 301 + + L R G +LS++A L L + R + + D + +VD Sbjct 304 ETQRISFLLRSLGFGA-IPLHGQLSQSARLGALGKFRSRSRDILVATDVAARGLDIPSVD 362 Query 302 ALAAL------QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLE 355 + + + HR T + + F + + L G KL+ Sbjct 363 VVLNFDLPTDSKTYVHRVGRTAR---AGKSGVAISFVTQYDVEIWLRIEGALGKKLK--- 416 Query 356 KILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHM 415 ++ ++ A + + + G G S+ M Sbjct 417 -----EYELEKDE-VMVLAERVGEAQR--QAIVEMKNFDEKRGTKAKKFGKGKRSRD-EM 467 Query 416 TQRD 419 Q + Sbjct 468 DQEE 471 >sp|Q4WJE9|RRP3_ASPFU ATP-dependent rRNA helicase rrp3 OS=Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293) OX=330879 GN=rrp3 PE=3 SV=1 Length=472 Score = 132 bits (332), Expect = 1e-31, Method: Composition-based stats. Identities = 65/368 (18%), Positives = 130/368 (35%), Gaps = 48/368 (13%) Query 202 NCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQ 261 P ++ +S + G + I ++M S G + + Sbjct 116 ENPQSFFGLILAPTRELAFQISKSFESLGSTINVRCAVIVGGMDMVSQSIALGKKPH--- 172 Query 262 VVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVD-ALAALQDFYHREHVTKTQI 320 ++ + L L+ + ++L +Y L++ + R +D L D + + + Sbjct 173 IIVATPGRLLDHLENTKGFSLRTLKY---LVMDEADRLLDMDFGPLLDKILKVLPRERRT 229 Query 321 LCAERRLLALFDDRKNELAHLATHGPE-----NPKLEMLEKILQRQFSSSNSPR------ 369 A + L + P + K + + +LQ + + Sbjct 230 FL----FSATMSSKVESLQRASLSNPLRVSVSSNKYQTVSTLLQSYLFLPHKHKDIYLVY 285 Query 370 ---------GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ 420 IIFTRT + L+ +G G ++Q + Sbjct 286 LLNEFVGQSTIIFTRTVHETQRISFLLRS--------------LGFGAIPLHGQLSQSAR 331 Query 421 QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVY 479 + KF+ + ++LVAT VA GLDIP +VV+ + L T+ + V GR ARA +S Sbjct 332 LGALGKFRSRSRDILVATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGV 391 Query 480 AFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQ 539 A I AL +++ ++K + ++ + Q+ A+ + + Sbjct 392 AISFVTQYDVEIWLRIEGALGKKLKEY--ELEKDEVMVLAERVGEAQRQAIMEMKNFDEK 449 Query 540 RENQRQQF 547 R + ++F Sbjct 450 RGTKAKKF 457 Score = 64.0 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 66/424 (16%), Positives = 136/424 (32%), Gaps = 42/424 (10%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKV-VVLVNRVHLVTQHGE 65 Q E I AL+G+++I TG+GKT A A + L + ++L L Q + Sbjct 79 QAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMENPQSFFGLILAPTRELAFQISK 138 Query 66 EFRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 F + + G M + L + +++ T L L + + L Sbjct 139 SFESLGSTINVRCAVIVGGMDMVSQSIALGKKPHIIVATPGRLLDHLENTKG---FSLRT 195 Query 125 FSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLP---QVLGLTASPGTGGASKLDGA 181 +V+DE ++ + L + + LP + +A+ + S + Sbjct 196 LKYLVMDEADR--------LLDMDFGPLLDKILKVLPRERRTFLFSATMSSKVESLQRAS 247 Query 182 INHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIH 241 +++ L++ + + + +S H + L + G +H Sbjct 248 LSNPLRVSVSSNKYQTVSTLLQSYLFLPHKHKDIYLVYL----LNEFVGQSTIIFTRTVH 303 Query 242 DHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVD 301 + + L R G +LS++A L L + R + + D + +VD Sbjct 304 ETQRISFLLRSLGFGA-IPLHGQLSQSARLGALGKFRSRSRDILVATDVAARGLDIPSVD 362 Query 302 ALAAL------QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLE 355 + + + HR T + + F + + L G KL+ Sbjct 363 VVLNFDLPTDSKTYVHRVGRTAR---AGKSGVAISFVTQYDVEIWLRIEGALGKKLK--- 416 Query 356 KILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHM 415 ++ ++ A + + + G G S+ M Sbjct 417 -----EYELEKDE-VMVLAERVGEAQR--QAIMEMKNFDEKRGTKAKKFGKGKRSRD-EM 467 Query 416 TQRD 419 Q + Sbjct 468 DQEE 471 >sp|A2QQA8|PRP5_ASPNC Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Aspergillus niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) OX=425011 GN=prp5 PE=3 SV=2 Length=1180 Score = 136 bits (341), Expect = 1e-31, Method: Composition-based stats. Identities = 66/368 (18%), Positives = 127/368 (35%), Gaps = 47/368 (13%) Query 212 QQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAA 269 Q+P P +L ++ L+ L +G + Q+ L A Sbjct 612 QRPLDNMEGPVGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIADLKRGA 671 Query 270 ALAGLQEQRVYAL--------HLRRYNDALLIHDTVRAVD---------ALAALQDFYH- 311 + R+ L R +++ + R D +A ++ Sbjct 672 EIIVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRPDRQT 731 Query 312 ----------REHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQ 361 E + + + ++ E+ + ++ K L ++L Sbjct 732 VLFSATFPRNMEALARKTLTKPIEIVVGGKSVVAPEITQIVEVRNDDQKFVRLLELLGNL 791 Query 362 FSS--SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRD 419 +SS + R +IF +++A +LL L ++ G S Q D Sbjct 792 YSSDENEDARALIFVDRQEAADALLRELMRK--------------GYPCMSIHGGKDQID 837 Query 420 QQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSV 478 + I+ F+ G +L+ATSVA GLD+ +VV Y + V GR RA + Sbjct 838 RDSTIEDFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTG 897 Query 479 YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA 538 A +E I +AL+ ++ VQK+ A + ++A+ + + Sbjct 898 TAVTFLTEDQERYSVDIAKALKQSGQKVPEPVQKLVDAFLEKVKAGKEKASASGFGGKGL 957 Query 539 QRENQRQQ 546 +R +Q + Sbjct 958 ERLDQERD 965 Score = 58.7 bits (140), Expect = 2e-07, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 54/138 (39%), Gaps = 12/138 (9%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYV-AKRH------LETVDGAKVVVLVNRVHL 59 Q + I + G+++I TG+GKT A + RH L+ ++G +++ L Sbjct 574 QAQAIPAIMSGRDVIGVAKTGSGKT-IAFLIPMFRHIKDQRPLDNMEGPVGLIMTPTREL 632 Query 60 VTQHGEEFRRMLDG--RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE 117 TQ ++ + L V G L R ++++CT + L + Sbjct 633 ATQIHKDCKPFLKALNLRAVCAYGGAPIKDQI-ADLKRGAEIIVCTPGRMIDLLAANAGR 691 Query 118 EHVELTVFSLIVVDECHH 135 L + +V+DE Sbjct 692 -VTNLRRVTYVVLDEADR 708 >sp|Q5HJH8|HSDR_STAAC Type I restriction enzyme SauCOLORF180P endonuclease subunit OS=Staphylococcus aureus (strain COL) OX=93062 GN=hsdR PE=3 SV=1 Length=929 Score = 135 bits (340), Expect = 1e-31, Method: Composition-based stats. Identities = 41/185 (22%), Positives = 73/185 (39%), Gaps = 18/185 (10%) Query 1 MELRSYQWEVIMPALE-----GKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVN 55 M +R YQ + ++ G N +W TG+GKT + ++ + D KV+ LV+ Sbjct 239 MAMRPYQVYAVEALIQQATETGNNGYVWHTTGSGKTLTSFKASQILSQQDDIKKVIFLVD 298 Query 56 RVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE 115 R L +Q EEF + G T + + + L L++ T + + A+ Sbjct 299 RKDLDSQTEEEFNKFAKGAVDKTFNTSQLVRQLNDKSLP----LIVTTIQKMAKAIQGNA 354 Query 116 EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGA 175 T + ++DECH + ++ ++ + Q G T +P Sbjct 355 PLLEQYKTNKVVFIIDECHRSQFGDMHRLVKQHFKN---------AQYFGFTGTPRFPEN 405 Query 176 SKLDG 180 S DG Sbjct 406 SSQDG 410 >sp|Q7SH33|PRP5_NEUCR Pre-mRNA-processing ATP-dependent RNA helicase prp-5 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=prp-5 PE=3 SV=1 Length=1194 Score = 136 bits (341), Expect = 1e-31, Method: Composition-based stats. Identities = 64/346 (18%), Positives = 116/346 (34%), Gaps = 48/346 (14%) Query 204 CPQLQEHSQQ-PCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELS--RKFGTQMYEQ 260 P L+ Q P + P +L ++ + + +L +G + Sbjct 617 LPMLRHVKDQDPVTGDDGAIALIMTPTRELCTQIYSDLQPFAKALKLRVVAAYGGNAIKD 676 Query 261 QVVKLSEAAALAGLQEQRVYAL---------HLRRYNDALLIHDTVRAVD---------- 301 Q+ +L A + R+ L +L+R L++ + R D Sbjct 677 QIAELKRGAEIIVATPGRLIDLLAANGGRVTNLKR-ATYLVLDEADRMFDMGFEPQVMKI 735 Query 302 ----------ALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKL 351 L + + +TK + + E+ + E K Sbjct 736 FNNVRPDRQTILFSATMPRIIDALTKKVLRDPVEITVGGRSVVAPEITQIVEVMDEGKKF 795 Query 352 EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ 411 L ++L ++ + R +IF ++ A LL L ++ G G S Sbjct 796 NRLLELLGELYADDDDVRSLIFVERQEKADDLLRELLRR--------------GYGCMSI 841 Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 Q D+ I F+ G +L+ATS+A GLD+ +V+ Y + V GR Sbjct 842 HGGKDQEDRNSTISDFKKGVCPILIATSIAARGLDVKQLKLVINYDAPNHLEDYVHRAGR 901 Query 472 -ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQA 516 RA + A +E I +ALE + + +M +A Sbjct 902 TGRAGNTGTAVTFITEEQENCASGIAKALEQSGQPVPDRLNEMRKA 947 Score = 69.8 bits (169), Expect = 6e-11, Method: Composition-based stats. Identities = 57/324 (18%), Positives = 108/324 (33%), Gaps = 31/324 (10%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLET------VDGAKVVVLVNRVHLV 60 Q + + + G+++I TG+GKT A A RH++ DGA +++ L Sbjct 588 QMQALPVIMSGRDVIGVAKTGSGKTMAFALPMLRHVKDQDPVTGDDGAIALIMTPTRELC 647 Query 61 TQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 TQ + + + V G + L R ++++ T L L + Sbjct 648 TQIYSDLQPFAKALKLRVVAAYGGNAIKDQIAELKRGAEIIVATPGRLIDLLAANGGR-V 706 Query 120 VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQ-----PLPQVL-GLTA----S 169 L + +V+DE +M + ++ R +P+++ LT Sbjct 707 TNLKRATYLVLDEADRMFDMGFEPQVMKIFNNVRPDRQTILFSATMPRIIDALTKKVLRD 766 Query 170 PGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYN-LCHRRSQDP 228 P + Q+ +D N +L L Q+ Sbjct 767 PVEITVGGRSVVAPEITQIVEVMDEGKKF---NRLLELLGELYADDDDVRSLIFVERQEK 823 Query 229 FGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN 288 DLL++L+ + + + + Q + + L + A L Sbjct 824 ADDLLRELLRRGYGCMSIHGGK----DQEDRNSTISDFKKGVCPILIATSIAARGLDVKQ 879 Query 289 DALLIHDTVRAVDALAALQDFYHR 312 L+I+ DA L+D+ HR Sbjct 880 LKLVIN-----YDAPNHLEDYVHR 898 >sp|Q0D8N0|RH53_ORYSJ DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0143700 PE=2 SV=2 Length=602 Score = 134 bits (336), Expect = 1e-31, Method: Composition-based stats. Identities = 48/204 (24%), Positives = 85/204 (42%), Gaps = 20/204 (10%) Query 298 RAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPEN-PKLEMLEK 356 R +A + R+ +K L+ D + E L + E+ K +L Sbjct 261 RQSMLFSATMPSWIRKITSKYLKDPIIIDLVGDEDQKLPEGISLYSIASEHYGKPSILGP 320 Query 357 ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT 416 +++ +N + I+FT+T++ A L + + Q L G ++ Sbjct 321 LIKEH---ANGGKCIVFTQTKREADRLAYAMGRSYA-------CQALHG--------DIS 362 Query 417 QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARAD 475 Q ++ + F+DG N+LVAT VA GLDIP+ ++V+ Y L V GR ARA Sbjct 363 QNQRERTLSGFRDGRFNILVATDVAARGLDIPNVDLVIHYELPNTSELFVHRSGRTARAG 422 Query 476 QSVYAFVATEGSRELKRELINEAL 499 + A + + +I + + Sbjct 423 KKGSAILIYTNDQARAVRIIEQDI 446 Score = 56.7 bits (135), Expect = 5e-07, Method: Composition-based stats. Identities = 29/134 (22%), Positives = 49/134 (37%), Gaps = 13/134 (10%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTR---AAAY-VAKRHLETVDGAK---VVVLVNRVHL 59 Q V+ PA++GK++I TG GKT RH E + ++L L Sbjct 111 QRAVLDPAMQGKDMIGRARTGTGKTLAFGIPIMDRILRHNEKNGSGRNPLAIILAPTREL 170 Query 60 VTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 Q +EF+ + G + L D+++ T + L Sbjct 171 ARQVEKEFKESAPLDSLC--VYGGVPISHQMRALNYGVDVVVGTPGRIIDLL----RRGV 224 Query 120 VELTVFSLIVVDEC 133 + L+ +V+DE Sbjct 225 LNLSEIQFVVLDEA 238 >sp|Q756G5|DBP8_EREGS ATP-dependent RNA helicase DBP8 OS=Eremothecium gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=DBP8 PE=3 SV=1 Length=435 Score = 131 bits (329), Expect = 1e-31, Method: Composition-based stats. Identities = 52/207 (25%), Positives = 84/207 (41%), Gaps = 25/207 (12%) Query 346 PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 PE+ K L ++L + S S I+F SA L L Q + IR L Sbjct 239 PEHVKEAYLYQVLSSEEYKSKS--AIVFVNRTISAEILRRMLMQLE------IRVTSL-- 288 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465 + M QR++ +Q+F+ +L+AT VA GLDIP +VV Y + N + Sbjct 289 ------HSQMPQRERTNSLQRFRANAARVLIATDVASRGLDIPAVQLVVNYDIPANPDTY 342 Query 466 VQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD 524 + GR ARA + A +++ R I E + ++ + D A + + Sbjct 343 IHRAGRTARAGRGGEALSFI-APKDVSR--IQAIEERIGKKMDEFTKVGDTALIRKSLNK 399 Query 525 LQQAALTKRAAQ-----AAQRENQRQQ 546 + A A +R+ QR + Sbjct 400 VTVAKRESLMAMDKEGFGERRKTQRSK 426 Score = 48.3 bits (113), Expect = 2e-04, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 41/113 (36%), Gaps = 8/113 (7%) Query 26 TGAGKT--RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ---HGEEFRRMLDGRWTVTTL 80 TG+GKT AA + K + G +VL L Q +++ R + Sbjct 52 TGSGKTIAFAAPMLTKWSADPC-GMFGIVLTPTRELAMQIAEQFTALGSVMNIRVALVVG 110 Query 81 SGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC 133 D+ +A L R +I T L + E+ L +V+DE Sbjct 111 GEDIVSQAL--ELQRKPHFIIATPGRLAHHIMHSGEDTIGGLKRVRYLVLDEA 161 >sp|P21507|SRMB_ECOLI ATP-dependent RNA helicase SrmB OS=Escherichia coli (strain K12) OX=83333 GN=srmB PE=1 SV=1 Length=444 Score = 131 bits (330), Expect = 1e-31, Method: Composition-based stats. Identities = 58/278 (21%), Positives = 97/278 (35%), Gaps = 49/278 (18%) Query 286 RYNDALLIHDTVRAVDALAALQDFYHREHVTKTQI------LCAERRLLALFDDRKNELA 339 R + L++ + R +D + QD H T+ + E + F +R E Sbjct 149 RAVETLILDEADRMLD-MGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQDFAERLLEDP 207 Query 340 HLATHGP---ENPK----------LEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLW 386 + P E K LE +L + R I+F R R+ H L W Sbjct 208 VEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANW 267 Query 387 LQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLD 446 L++ G N M Q + E I++ +G +N+LVAT VA G+D Sbjct 268 LREA--------------GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGID 313 Query 447 IPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQ 505 IP + V + + + + + GR ARA + A E L + +E ++ Sbjct 314 IPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIK- 372 Query 506 AVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQ 543 I +L+ Q + + Sbjct 373 -------------ARVIDELRPKTRAPSEKQTGKPSKK 397 Score = 53.6 bits (127), Expect = 4e-06, Method: Composition-based stats. Identities = 27/129 (21%), Positives = 52/129 (40%), Gaps = 14/129 (11%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK-----VVVLVNRVHLVTQ---HGEE 66 L+G++++ PTG GKT A A +HL K +++L L Q H E Sbjct 39 LDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARE 98 Query 67 FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS 126 + + T++G + + D+++ T L + +EE+ + Sbjct 99 LAKHT--HLDIATITGGVAYMNHAEVFSENQDIVVATTGRLLQYI----KEENFDCRAVE 152 Query 127 LIVVDECHH 135 +++DE Sbjct 153 TLILDEADR 161 >sp|P24783|DBP2_YEAST ATP-dependent RNA helicase DBP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DBP2 PE=1 SV=1 Length=546 Score = 133 bits (334), Expect = 1e-31, Method: Composition-based stats. Identities = 56/288 (19%), Positives = 105/288 (36%), Gaps = 45/288 (16%) Query 253 FGTQMYEQQVVKLSEAAALAGLQEQRVY------ALHLRRYNDALLIHDTVRAVD----- 301 +G QQ+ LS + + R+ +L+R L++ + R +D Sbjct 221 YGGVPKSQQIRDLSRGSEIVIATPGRLIDMLEIGKTNLKR-VTYLVLDEADRMLDMGFEP 279 Query 302 ----ALAALQDFYHREHVTKTQILCAER----RLLALFDDRKNELAHLATHG-------- 345 + ++ + T ++ L + L A+H Sbjct 280 QIRKIVDQIRPDRQTLMWSATWPKEVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVV 339 Query 346 PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 + K + L K L S N + +IF T++ + +L++ G Sbjct 340 SDFEKRDRLNKYL-ETASQDNEYKTLIFASTKRMCDDITKYLRED--------------G 384 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465 + QR++ V+Q+F++G ++VAT VA G+D+ N V+ Y + N Sbjct 385 WPALAIHGDKDQRERDWVLQEFRNGRSPIMVATDVAARGIDVKGINYVINYDMPGNIEDY 444 Query 466 VQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQ 511 V GR RA + A TE ++ L +LI+ E ++ Sbjct 445 VHRIGRTGRAGATGTAISFFTEQNKGLGAKLISIMREANQNIPPELLK 492 Score = 49.8 bits (117), Expect = 6e-05, Method: Composition-based stats. Identities = 32/129 (25%), Positives = 49/129 (38%), Gaps = 11/129 (9%) Query 14 ALEGKNIIIWLPTGAGKTR------AAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEF 67 AL G++++ TG+GKT A+ L DG V+VL L Q E Sbjct 147 ALSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQTEC 206 Query 68 RRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS 126 + R T + G + L+R +++I T L L E L + Sbjct 207 SKFGHSSRIRNTCVYGGVPKSQQIRDLSRGSEIVIATPGRLIDML----EIGKTNLKRVT 262 Query 127 LIVVDECHH 135 +V+DE Sbjct 263 YLVLDEADR 271 >sp|A6ZRX0|DBP2_YEAS7 ATP-dependent RNA helicase DBP2 OS=Saccharomyces cerevisiae (strain YJM789) OX=307796 GN=DBP2 PE=3 SV=1 Length=546 Score = 133 bits (334), Expect = 1e-31, Method: Composition-based stats. Identities = 56/288 (19%), Positives = 105/288 (36%), Gaps = 45/288 (16%) Query 253 FGTQMYEQQVVKLSEAAALAGLQEQRVY------ALHLRRYNDALLIHDTVRAVD----- 301 +G QQ+ LS + + R+ +L+R L++ + R +D Sbjct 221 YGGVPKSQQIRDLSRGSEIVIATPGRLIDMLEIGKTNLKR-VTYLVLDEADRMLDMGFEP 279 Query 302 ----ALAALQDFYHREHVTKTQILCAER----RLLALFDDRKNELAHLATHG-------- 345 + ++ + T ++ L + L A+H Sbjct 280 QIRKIVDQIRPDRQTLMWSATWPKEVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVV 339 Query 346 PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 + K + L K L S N + +IF T++ + +L++ G Sbjct 340 SDFEKRDRLNKYL-ETASQDNEYKTLIFASTKRMCDDITKYLRED--------------G 384 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465 + QR++ V+Q+F++G ++VAT VA G+D+ N V+ Y + N Sbjct 385 WPALAIHGDKDQRERDWVLQEFRNGRSPIMVATDVAARGIDVKGINYVINYDMPGNIEDY 444 Query 466 VQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQ 511 V GR RA + A TE ++ L +LI+ E ++ Sbjct 445 VHRIGRTGRAGATGTAISFFTEQNKGLGAKLISIMREANQNIPPELLK 492 Score = 49.8 bits (117), Expect = 6e-05, Method: Composition-based stats. Identities = 32/129 (25%), Positives = 49/129 (38%), Gaps = 11/129 (9%) Query 14 ALEGKNIIIWLPTGAGKTR------AAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEF 67 AL G++++ TG+GKT A+ L DG V+VL L Q E Sbjct 147 ALSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQTEC 206 Query 68 RRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS 126 + R T + G + L+R +++I T L L E L + Sbjct 207 SKFGHSSRIRNTCVYGGVPKSQQIRDLSRGSEIVIATPGRLIDML----EIGKTNLKRVT 262 Query 127 LIVVDECHH 135 +V+DE Sbjct 263 YLVLDEADR 271 >sp|A6RW79|PRP5_BOTFB Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Botryotinia fuckeliana (strain B05.10) OX=332648 GN=prp5 PE=3 SV=2 Length=1179 Score = 135 bits (340), Expect = 2e-31, Method: Composition-based stats. Identities = 59/340 (17%), Positives = 114/340 (34%), Gaps = 45/340 (13%) Query 212 QQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAA 269 Q+P K + P +L ++ + L+ L +G + + Q+ L A Sbjct 619 QRPLKGSDGPIGLIMTPTRELATQIHKECKPFLKAMGLRAVCAYGGAIIKDQIADLKRGA 678 Query 270 ALAGLQEQRVYAL--------HLRRYNDALLIHDTVRAVD-------------ALAALQD 308 + R+ L + +++ + R D Q Sbjct 679 EIIVCTPGRMIELLAANSGRVTNLQRVTYVVLDEADRMFDMGFEPQVMKVFNNIRPNRQT 738 Query 309 FYHREHVTKTQILCAERRLLALFDDRK-------NELAHLATHGPENPKLEMLEKILQRQ 361 + + A++ L + + E+ + E K L ++L Sbjct 739 ILFSATMPRIMDALAKKTLQSPVEIVVGGRSVVAPEITQIVEVREEKEKFHRLLELLGEL 798 Query 362 FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ 421 +++ R +IF ++ A LL L ++ G S Q D+ Sbjct 799 YNTDEDARTLIFVDRQEKADDLLKDLMRK--------------GYPCMSIHGGKDQVDRD 844 Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYA 480 I F+ G + +++ATSVA GLD+ +VV + + V GR RA + A Sbjct 845 STIDDFKAGVVPIMIATSVAARGLDVKQLKLVVNFDAPNHLEDYVHRAGRTGRAGNTGTA 904 Query 481 FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA 520 +E I +ALE ++ + +M ++ Sbjct 905 VTFITEEQEQYSVGIAKALEQSGQEVPDRLNEMRKSYKDK 944 Score = 75.2 bits (183), Expect = 1e-12, Method: Composition-based stats. Identities = 62/328 (19%), Positives = 113/328 (34%), Gaps = 39/328 (12%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYV-AKRHLETVDGAK------VVVLVNRVHL 59 Q + I + G+++I TG+GKT A + RH+ K +++ L Sbjct 581 QMQAIPAIMSGRDVIGVAKTGSGKT-IAFLLPMFRHIRDQRPLKGSDGPIGLIMTPTREL 639 Query 60 VTQHGEEFRRMLD--GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE 117 TQ +E + L G V G + L R ++++CT + L + Sbjct 640 ATQIHKECKPFLKAMGLRAVCAYGGAIIKDQI-ADLKRGAEIIVCTPGRMIELLAANSGR 698 Query 118 EHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQ-----PLPQVLGLTA---- 168 L + +V+DE +M + ++ R +P+++ A Sbjct 699 -VTNLQRVTYVVLDEADRMFDMGFEPQVMKVFNNIRPNRQTILFSATMPRIMDALAKKTL 757 Query 169 -SP---GTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRR 224 SP GG S + I ++++ L E L Sbjct 758 QSPVEIVVGGRSVVAPEITQIVEV-----REEKEKFHRLLELLGELYNTDEDARTLIFVD 812 Query 225 SQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHL 284 Q+ DLLK LM + + + + Q+ + +A + + V A L Sbjct 813 RQEKADDLLKDLMRKGYPCMSIHGGK----DQVDRDSTIDDFKAGVVPIMIATSVAARGL 868 Query 285 RRYNDALLIHDTVRAVDALAALQDFYHR 312 L+++ DA L+D+ HR Sbjct 869 DVKQLKLVVN-----FDAPNHLEDYVHR 891 >sp|A7TK63|DBP8_VANPO ATP-dependent RNA helicase DBP8 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 GN=DBP8 PE=3 SV=1 Length=431 Score = 131 bits (328), Expect = 2e-31, Method: Composition-based stats. Identities = 47/212 (22%), Positives = 89/212 (42%), Gaps = 27/212 (13%) Query 346 PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 PE+ K L ++L I+F +A L L+ + Sbjct 235 PEHVKEAYLYQLLTC--EDYKDSSVIVFVNRTTAAEVLRRTLRSLE-------------- 278 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465 +S + M Q ++ +Q+F+ +L+AT VA GLDIP +V+ Y + + + Sbjct 279 VRVASLHSQMPQSERINSLQRFRANAARVLIATDVAARGLDIPTVELVINYDIPQDPDTF 338 Query 466 VQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM-DQAEYQAKIR 523 + GR ARA +S A R++ R EA+E + + + +K+ D A + + Sbjct 339 IHRSGRTARAGRSGDAISFVT-PRDVSRI---EAIEERINKKMDECKKVHDTAVIRKALT 394 Query 524 DLQQAAL-----TKRAAQAAQRENQRQQFPVE 550 + +A ++A +R+ Q+++ E Sbjct 395 KVTKAKRESLMDMEKANFGEKRKTQKKKNLAE 426 Score = 48.6 bits (114), Expect = 1e-04, Method: Composition-based stats. Identities = 32/130 (25%), Positives = 48/130 (37%), Gaps = 4/130 (3%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAY--VAKRHLETVDGAKVVVLVNRVHLVTQHG 64 Q I L+G++ I TG+GKT A + + + G VVL L Q Sbjct 29 QKHCIPEILKGRDCIGGAKTGSGKT-IAFAGPMLSQWSDDPSGMFGVVLTPTRELAIQIA 87 Query 65 EEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELT 123 E+F + V + G L + +I T L + S EE L+ Sbjct 88 EQFTALGSSMNIRVCLVVGGESIVKQALELQKKPHFIIATPGRLAHHILSSGEEVVGGLS 147 Query 124 VFSLIVVDEC 133 +V+DE Sbjct 148 RVKYLVLDEA 157 >sp|Q8K9H6|DEAD_BUCAP ATP-dependent RNA helicase DeaD OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) OX=198804 GN=deaD PE=3 SV=1 Length=601 Score = 133 bits (334), Expect = 2e-31, Method: Composition-based stats. Identities = 59/328 (18%), Positives = 114/328 (35%), Gaps = 43/328 (13%) Query 207 LQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLS 266 L + K + + + ++ + +G Q YE Q+ L Sbjct 64 LLHNLNINLKAPQILVLAPTRELAVQVAEAFSDFSKYIMGIHVLPLYGGQRYEVQLRALR 123 Query 267 EAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERR 326 + + R+ HL+R L + +D + E V + Sbjct 124 QGPQIVVGTPGRLLD-HLKRG-TLNLSNLYALVLDEADEMLRMGFIEDVETIMSQIPKEH 181 Query 327 LLALFDDRKNE----LAHLATHGPENPKLE------------------MLEKILQRQFSS 364 ALF E ++ P+ K++ L R Sbjct 182 QTALFSATMPEAIRRISKRFMKNPQEIKIQSNITTRPDIKQSYWMVYGRKTDALIRFLEV 241 Query 365 SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI 424 + IIF +T+ + + L++ G +++ + M Q +++ + Sbjct 242 EDFSATIIFVKTKNATLEVSEALERN--------------GYNSAALNGDMNQALREQTL 287 Query 425 QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVA 483 ++ + G L++L+AT VA GLD+ + V+ Y + + S V GR RA ++ A + Sbjct 288 ERLKSGRLDILIATDVAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRAGRALLF 347 Query 484 TEGSRELKRELINEALETLMEQAVAAVQ 511 E +R L N +E + Q + VQ Sbjct 348 VENRE--RRLLRN--IERTINQTIPEVQ 371 Score = 54.0 bits (128), Expect = 3e-06, Method: Composition-based stats. Identities = 28/122 (23%), Positives = 47/122 (39%), Gaps = 7/122 (6%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGEEFRRMLD- 72 LEG++++ TG+GKT A + +L A +++VL L Q E F Sbjct 41 LEGRDVLGMAQTGSGKTAAFSLPLLHNLNINLKAPQILVLAPTRELAVQVAEAFSDFSKY 100 Query 73 -GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVD 131 V L G L + +++ T L L + + L+ +V+D Sbjct 101 IMGIHVLPLYGGQRYEVQLRALRQGPQIVVGTPGRLLDHL----KRGTLNLSNLYALVLD 156 Query 132 EC 133 E Sbjct 157 EA 158 >sp|Q7Y183|RH10_ORYSJ DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa subsp. japonica OX=39947 GN=RH10 PE=2 SV=1 Length=472 Score = 131 bits (329), Expect = 2e-31, Method: Composition-based stats. Identities = 72/371 (19%), Positives = 132/371 (36%), Gaps = 60/371 (16%) Query 214 PCKQYNLCHRRSQDPFGDLLK---KLMDQIHDHLEMPELSRKF------GTQMYEQQVVK 264 P Q L + Q F +L +L QI E + G QQ V Sbjct 98 PIIQALLKQDKPQALFACVLSPTRELAFQIGQQFEALGSAIGLSCTVLVGGVDRVQQAVS 157 Query 265 LSEAAALAGLQEQRV--YALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILC 322 L++ + R+ + + ++ L + + D L ++ ++ + + Sbjct 158 LAKRPHIVVGTPGRLLDHLTDTKGFSLNKLKYLVLDEADKLLNVE---FQKALDDILNVI 214 Query 323 AERRLLALFD----DRKNELAHLATHGPEN----PKLEMLEKILQRQFSSSNSPR----- 369 + R LF ++ ++L P K ++ + Q + + Sbjct 215 PKERRTFLFSATMTNKVSKLQRACLRNPVKVEVASKYSTVDTLRQEFYFVPADYKDCFLV 274 Query 370 ----------GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRD 419 +IF RT +S L L L+ + S S M+Q Sbjct 275 HVLNELPGSMIMIFVRTCESTRLLALTLRNLRFKAI--------------SISGQMSQDK 320 Query 420 QQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSV 478 + + +F+ N+L+ T VA GLDI +VV+ Y + N V GR ARA + Sbjct 321 RLGALNRFKTKDCNILICTDVASRGLDIQGVDVVINYDIPMNSKDYVHRVGRTARAGNTG 380 Query 479 YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAE---YQAKIRDLQQAALTKRAA 535 YA + + +E L+ + +K+D AE + +I D ++ ALT Sbjct 381 YAVSLVNQYEAMWF----KMIEKLLGYEIPD-RKVDNAEIMILRERISDSKRIALTTMKE 435 Query 536 QAAQRENQRQQ 546 ++ +R+ Sbjct 436 GGGHKKKRRKN 446 Score = 62.9 bits (151), Expect = 5e-09, Method: Composition-based stats. Identities = 54/318 (17%), Positives = 105/318 (33%), Gaps = 28/318 (9%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVV---LVNRVHLVT-- 61 Q E I ALEG+++I TG+GKT A A + L D + + L L Sbjct 68 QAEAIPHALEGRDLIGLGQTGSGKTGAFALPIIQALLKQDKPQALFACVLSPTRELAFQI 127 Query 62 -QHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 Q E + + T L G + LA+ +++ T L LT + Sbjct 128 GQQFEALGSAIGL--SCTVLVGGVDRVQQAVSLAKRPHIVVGTPGRLLDHLTDTKG---F 182 Query 121 ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG 180 L +V+DE D + NV + L+ L + +A+ + Sbjct 183 SLNKLKYLVLDEA-----DKLLNVEFQKALDDILNVIPKERRTFLFSATMTNKVSKLQRA 237 Query 181 AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI 240 + + +++ + + K L H ++ P + + + Sbjct 238 CLRNPVKVE---VASKYSTVDTLRQEFY-FVPADYKDCFLVHVLNELPGS--MIMIFVRT 291 Query 241 HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV 300 + + L+ + ++S+ L L + ++ D ++ V Sbjct 292 CESTRLLALTLRNLRFKAISISGQMSQDKRLGALNRFKTKDCNILICTDVASRGLDIQGV 351 Query 301 DALAAL------QDFYHR 312 D + +D+ HR Sbjct 352 DVVINYDIPMNSKDYVHR 369 >sp|A2XKG2|RH10_ORYSI DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa subsp. indica OX=39946 GN=RH10 PE=1 SV=1 Length=472 Score = 131 bits (329), Expect = 2e-31, Method: Composition-based stats. Identities = 72/371 (19%), Positives = 132/371 (36%), Gaps = 60/371 (16%) Query 214 PCKQYNLCHRRSQDPFGDLLK---KLMDQIHDHLEMPELSRKF------GTQMYEQQVVK 264 P Q L + Q F +L +L QI E + G QQ V Sbjct 98 PIIQALLKQDKPQALFACVLSPTRELAFQIGQQFEALGSAIGLSCTVLVGGVDRVQQAVS 157 Query 265 LSEAAALAGLQEQRV--YALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILC 322 L++ + R+ + + ++ L + + D L ++ ++ + + Sbjct 158 LAKRPHIVVGTPGRLLDHLTDTKGFSLNKLKYLVLDEADKLLNVE---FQKALDDILNVI 214 Query 323 AERRLLALFD----DRKNELAHLATHGPEN----PKLEMLEKILQRQFSSSNSPR----- 369 + R LF ++ ++L P K ++ + Q + + Sbjct 215 PKERRTFLFSATMTNKVSKLQRACLRNPVKVEVASKYSTVDTLRQEFYFVPADYKDCFLV 274 Query 370 ----------GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRD 419 +IF RT +S L L L+ + S S M+Q Sbjct 275 HVLNELPGSMIMIFVRTCESTRLLALTLRNLRFKAI--------------SISGQMSQDK 320 Query 420 QQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSV 478 + + +F+ N+L+ T VA GLDI +VV+ Y + N V GR ARA + Sbjct 321 RLGALNRFKTKDCNILICTDVASRGLDIQGVDVVINYDIPMNSKDYVHRVGRTARAGNTG 380 Query 479 YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAE---YQAKIRDLQQAALTKRAA 535 YA + + +E L+ + +K+D AE + +I D ++ ALT Sbjct 381 YAVSLVNQYEAMWF----KMIEKLLGYEIPD-RKVDNAEIMILRERISDSKRIALTTMKE 435 Query 536 QAAQRENQRQQ 546 ++ +R+ Sbjct 436 GGGHKKKRRKN 446 Score = 62.9 bits (151), Expect = 5e-09, Method: Composition-based stats. Identities = 54/318 (17%), Positives = 105/318 (33%), Gaps = 28/318 (9%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVV---LVNRVHLVT-- 61 Q E I ALEG+++I TG+GKT A A + L D + + L L Sbjct 68 QAEAIPHALEGRDLIGLGQTGSGKTGAFALPIIQALLKQDKPQALFACVLSPTRELAFQI 127 Query 62 -QHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 Q E + + T L G + LA+ +++ T L LT + Sbjct 128 GQQFEALGSAIGL--SCTVLVGGVDRVQQAVSLAKRPHIVVGTPGRLLDHLTDTKG---F 182 Query 121 ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG 180 L +V+DE D + NV + L+ L + +A+ + Sbjct 183 SLNKLKYLVLDEA-----DKLLNVEFQKALDDILNVIPKERRTFLFSATMTNKVSKLQRA 237 Query 181 AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI 240 + + +++ + + K L H ++ P + + + Sbjct 238 CLRNPVKVE---VASKYSTVDTLRQEFY-FVPADYKDCFLVHVLNELPGS--MIMIFVRT 291 Query 241 HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV 300 + + L+ + ++S+ L L + ++ D ++ V Sbjct 292 CESTRLLALTLRNLRFKAISISGQMSQDKRLGALNRFKTKDCNILICTDVASRGLDIQGV 351 Query 301 DALAAL------QDFYHR 312 D + +D+ HR Sbjct 352 DVVINYDIPMNSKDYVHR 369 >sp|Q9P6N8|RRP3_SCHPO ATP-dependent rRNA helicase rrp3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rrp3 PE=3 SV=1 Length=465 Score = 131 bits (328), Expect = 3e-31, Method: Composition-based stats. Identities = 73/409 (18%), Positives = 144/409 (35%), Gaps = 51/409 (12%) Query 164 LGL-TASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCH 222 LG T +P A + V+ L T + P +QE P + + Sbjct 64 LGFKTPTPIQQEAIPVVLNKRDVIGLAQ---TGSGKTAAFALPVIQELWNNPSPFFAVVL 120 Query 223 RRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYAL 282 +++ + + + I + + + G Q V LS+ + R+ Sbjct 121 APTRE-LAYQISEQFEAIGGSIGVRSVV-IVGGMDMVTQAVALSKKPHVLVCTPGRL-MD 177 Query 283 HLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFD----DRKNEL 338 HL L + +D L D + K + R LF + +L Sbjct 178 HLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPHERRTLLFSATMTSKVEKL 237 Query 339 AHLATHGPE----NPKLEMLEKILQRQFSSSNSPR---------------GIIFTRTRQS 379 + H P + K ++ ++QR + IIF RT Sbjct 238 QRASLHQPVRVAVSSKFSTVDTLIQRYLFFPFKHKDTYLVYLVNELAGNSIIIFARTVND 297 Query 380 AHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATS 439 L + L+ +G ++Q ++ + KF+ G + LVAT Sbjct 298 TQRLAILLRT--------------LGFSAIPLHGQLSQSNRLGALNKFKSGARSTLVATD 343 Query 440 VAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEA 498 VA GLDIP +VV+ Y + T+ + + GR ARA ++ + +L+ L Sbjct 344 VAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARAGRAGKSIALVTQ-YDLEPFLR--- 399 Query 499 LETLMEQAVAAVQKMDQAEY--QAKIRDLQQAALTKRAAQAAQRENQRQ 545 +E + + + + + + ++ + Q+ A+ + +R+++ + Sbjct 400 IEATIGKKMQEYEIDKEGVFLLSERVGEAQREAIIQMKEIHDRRKSKGK 448 Score = 66.0 bits (159), Expect = 5e-10, Method: Composition-based stats. Identities = 33/133 (25%), Positives = 49/133 (37%), Gaps = 9/133 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQ--- 62 Q E I L +++I TG+GKT A A V + VVL L Q Sbjct 73 QQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNPSPFFAVVLAPTRELAYQISE 132 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 E + R V DM +A L++ +L+CT L L + + L Sbjct 133 QFEAIGGSIGVRSVVIVGGMDMVTQAV--ALSKKPHVLVCTPGRLMDHLENTKG---FSL 187 Query 123 TVFSLIVVDECHH 135 +++DE Sbjct 188 KNLKYLIMDEADR 200 >sp|P0CQ78|DBP3_CRYNJ ATP-dependent RNA helicase DBP3 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=DBP3 PE=3 SV=1 Length=605 Score = 132 bits (333), Expect = 3e-31, Method: Composition-based stats. Identities = 53/288 (18%), Positives = 94/288 (33%), Gaps = 56/288 (19%) Query 288 NDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERR-LLALFDDRKNELAHLATHGP 346 L++ + R +DA D T + A + + LA + P Sbjct 330 VSYLVLDEADRMLDA-GFENDIRRIIAHTPGHKEGRQTVMFSATWPESVRRLASTFLNNP 388 Query 347 -----------------------ENP--KLEMLEKILQRQF-----SSSNSPRGIIFTRT 376 +NP K L L+ S ++ R ++F Sbjct 389 LRITVGSDELSANKRIEQIVEVLDNPRDKDFRLTHHLKAHLKVHPNSKTSPTRILVFALY 448 Query 377 RQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLV 436 ++ A L +++ G + MTQ + + ++ F+ G N+LV Sbjct 449 KKEAQRLEYTIRRA--------------GYAVGALHGDMTQEARFKALEAFKTGQQNVLV 494 Query 437 ATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYA---FVATEGSRELKR 492 AT VA GLDIP +V+ V GR RA ++ A F + L Sbjct 495 ATDVAARGLDIPDVGLVINVTFPLTTEDFVHRCGRTGRAGKTGKAVTFFTGENHEKSLAG 554 Query 493 ELI------NEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRA 534 E + + M++ ++K + Y A ++ A + Sbjct 555 EFMRVLRDVGAEIPKEMDRFPTTIKKKEHGSYGAFYKETTNAPAPTKI 602 Score = 47.1 bits (110), Expect = 5e-04, Method: Composition-based stats. Identities = 41/261 (16%), Positives = 73/261 (28%), Gaps = 42/261 (16%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA--------------KVVVLVNRVHLV 60 L K+++ TG+GKT A L + +++VL L Sbjct 208 LSKKDVVGIAETGSGKTLAFGVPGINLLSQLPPVTGSKKGRGQVPGQIQMLVLAPTRELA 267 Query 61 TQHGEEFRRMLDGR--WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEE 118 Q E + +V G + +++ T + Sbjct 268 QQSHEHLSAFGEQVGLKSVCIFGGVGKDGQARELSQKDTRVVVGTPGRTLD----LADSG 323 Query 119 HVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLT--------AS- 169 ++L+ S +V+DE N I + + T AS Sbjct 324 ELDLSSVSYLVLDEADRMLDAGFENDIRRIIAHTPGHKEGRQTVMFSATWPESVRRLAST 383 Query 170 ----P-GTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRR 224 P S A + Q+ LD +P++ +L H + + Sbjct 384 FLNNPLRITVGSDELSANKRIEQIVEVLD-----NPRDKDFRLTHHLK---AHLKVHPNS 435 Query 225 SQDPFGDLLKKLMDQIHDHLE 245 P L+ L + LE Sbjct 436 KTSPTRILVFALYKKEAQRLE 456 >sp|Q8SRB2|DBP2_ENCCU ATP-dependent RNA helicase DBP2 OS=Encephalitozoon cuniculi (strain GB-M1) OX=284813 GN=DBP2 PE=3 SV=1 Length=495 Score = 131 bits (329), Expect = 3e-31, Method: Composition-based stats. Identities = 57/316 (18%), Positives = 110/316 (35%), Gaps = 41/316 (13%) Query 212 QQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEAA 269 QQP ++ + P +L+ ++ + + M L +G + Q+ L E A Sbjct 152 QQPLRRGDGPIVLVLAPTRELVMQIKKVVDEFCGMFNLRSTAVYGGASSQPQIRALHEGA 211 Query 270 ALAGLQEQRVYALHLRRY-----NDALLIHDTVRAVD-----ALAALQDFYHREHVTKTQ 319 + R+ LH + + L++ + R +D L + + T Sbjct 212 EVVIATPGRLIDLHDQGHAPLSRVTFLVLDEADRMLDMGFEPQLRKIIPKTNANRQTLMW 271 Query 320 ILCAERRLLALFDDRKNELAHLATHGPE---NPKLEMLEKI---------LQRQFSSSNS 367 R + L + NE + E N K++ + ++ L + Sbjct 272 SATWPREVRGLAESYMNEYIQVVVGNEELKTNSKIKQIVEVCSGREKEDKLIGVLDNFKG 331 Query 368 PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF 427 + I+F +++ L L + G G ++ +Q + +V+ F Sbjct 332 DKVIVFCNMKRTCDDLEYVLNRS--------------GYGAAALHGDKSQNIRDKVLDDF 377 Query 428 QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAF---VAT 484 + G +L+AT VA GLD+ +V+ + + V GR + T Sbjct 378 RSGRRPILIATEVAGRGLDVNDVKLVINFDFPGSCEDYVHRIGRTARGNTKEGISHTFFT 437 Query 485 EGSRELKRELINEALE 500 G + RELI E Sbjct 438 VGDKANARELIRMLRE 453 Score = 57.9 bits (138), Expect = 2e-07, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 49/129 (38%), Gaps = 11/129 (9%) Query 14 ALEGKNIIIWLPTGAGKTRAAAYVAKRH------LETVDGAKVVVLVNRVHLVTQHGEEF 67 AL G++++ TG+GKT + A H L DG V+VL LV Q + Sbjct 121 ALSGRDMVGIAQTGSGKTLSFILPALVHAKDQQPLRRGDGPIVLVLAPTRELVMQIKKVV 180 Query 68 RRM-LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS 126 T + G + L +++I T L ++ H L+ + Sbjct 181 DEFCGMFNLRSTAVYGGASSQPQIRALHEGAEVVIATPGRLID----LHDQGHAPLSRVT 236 Query 127 LIVVDECHH 135 +V+DE Sbjct 237 FLVLDEADR 245 >sp|A7EML8|RRP3_SCLS1 ATP-dependent rRNA helicase rrp3 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 GN=rrp3 PE=3 SV=1 Length=482 Score = 131 bits (328), Expect = 3e-31, Method: Composition-based stats. Identities = 48/202 (24%), Positives = 81/202 (40%), Gaps = 26/202 (13%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K L +L S IIFTRT + + L+ +G G Sbjct 283 KDTYLIYLLNEFAGQS----AIIFTRTVNETQRIAILLRT--------------LGFGAI 324 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 ++Q + + KF+ G+ +LVAT VA GLDIP +VV+ Y + + + + Sbjct 325 PLHGQLSQSSRLGALNKFRAGSREILVATDVAARGLDIPSVDVVLNYDMPQDSKTYIHRV 384 Query 470 GR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQ 527 GR ARA +S +A T+ E+ +E + + Q + K R +++ Sbjct 385 GRTARAGKSGHAISFVTQYDVEIW-----MRIEAALGKKQEEYQTVKDEVMVFKPR-VEE 438 Query 528 AALTKRAAQAAQRENQRQQFPV 549 A R E++ ++ V Sbjct 439 AQRHARNEMKNLHEDRGKKGAV 460 Score = 64.0 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 48/304 (16%), Positives = 106/304 (35%), Gaps = 15/304 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q E I AL+G+++I TG+GKT A A + + L+ +VL L Q + Sbjct 83 QRESIPLALQGRDLIGLAETGSGKTAAFALPILQSLLDKPQPLFGLVLAPTRELAYQISQ 142 Query 66 EFRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 F + R + G M L + +++ T L L + + L Sbjct 143 SFEALGSIIRVKCAVIVGGMDMVPQAIALGKKPHIIVATPGRLLDHLENTKG---FSLRS 199 Query 125 FSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINH 184 +V+DE D + I+ + L++ + + +A+ + S ++ Sbjct 200 LKYLVMDEADRLL-DLDFGPILDKILKVLPRERRTYL----FSATISSKVESLQRASLKD 254 Query 185 VLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHL 244 L++ ++ + + +Q + P + + F + + + Sbjct 255 PLRV--SISSNKYQTVS---TLIQNYIFIPLVHKDTYLIYLLNEFAGQSAIIFTRTVNET 309 Query 245 EMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALA 304 + + + +LS+++ L L + R + + D + +VD + Sbjct 310 QRIAILLRTLGFGAIPLHGQLSQSSRLGALNKFRAGSREILVATDVAARGLDIPSVDVVL 369 Query 305 ALQD 308 Sbjct 370 NYDM 373 >sp|P0CQ79|DBP3_CRYNB ATP-dependent RNA helicase DBP3 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=DBP3 PE=3 SV=1 Length=605 Score = 132 bits (332), Expect = 4e-31, Method: Composition-based stats. Identities = 53/288 (18%), Positives = 94/288 (33%), Gaps = 56/288 (19%) Query 288 NDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERR-LLALFDDRKNELAHLATHGP 346 L++ + R +DA D T + A + + LA + P Sbjct 330 VSYLVLDEADRMLDA-GFENDIRRIIAHTPGHKEGRQTVMFSATWPESVRRLASTFLNNP 388 Query 347 -----------------------ENP--KLEMLEKILQRQF-----SSSNSPRGIIFTRT 376 +NP K L L+ S ++ R ++F Sbjct 389 LRITVGSDELSANKRIEQIVEVLDNPRDKDFRLTHHLKAHLKVHPNSKTSPTRILVFALY 448 Query 377 RQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLV 436 ++ A L +++ G + MTQ + + ++ F+ G N+LV Sbjct 449 KKEAQRLEYTIRRA--------------GYAVGALHGDMTQEARFKALEAFKTGQQNVLV 494 Query 437 ATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYA---FVATEGSRELKR 492 AT VA GLDIP +V+ V GR RA ++ A F + L Sbjct 495 ATDVAARGLDIPDVGLVINVTFPLTTEDFVHRCGRTGRAGKTGKAVTFFTGENHEKSLAG 554 Query 493 ELI------NEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRA 534 E + + M++ ++K + Y A ++ A + Sbjct 555 EFMRVLRDVGAEIPKEMDRFPTTIKKKEHGSYGAFYKETSNAPAPTKI 602 Score = 47.1 bits (110), Expect = 5e-04, Method: Composition-based stats. Identities = 41/261 (16%), Positives = 73/261 (28%), Gaps = 42/261 (16%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA--------------KVVVLVNRVHLV 60 L K+++ TG+GKT A L + +++VL L Sbjct 208 LSKKDVVGIAETGSGKTLAFGVPGINLLSQLPPVTGSKKGRGQVPGQIQMLVLAPTRELA 267 Query 61 TQHGEEFRRMLDGR--WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEE 118 Q E + +V G + +++ T + Sbjct 268 QQSHEHLSAFGEQVGLKSVCIFGGVGKDGQARELSQKDTRVVVGTPGRTLD----LADSG 323 Query 119 HVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLT--------AS- 169 ++L+ S +V+DE N I + + T AS Sbjct 324 ELDLSSVSYLVLDEADRMLDAGFENDIRRIIAHTPGHKEGRQTVMFSATWPESVRRLAST 383 Query 170 ----P-GTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRR 224 P S A + Q+ LD +P++ +L H + + Sbjct 384 FLNNPLRITVGSDELSANKRIEQIVEVLD-----NPRDKDFRLTHHLK---AHLKVHPNS 435 Query 225 SQDPFGDLLKKLMDQIHDHLE 245 P L+ L + LE Sbjct 436 KTSPTRILVFALYKKEAQRLE 456 >sp|A2RB17|RRP3_ASPNC ATP-dependent rRNA helicase rrp3 OS=Aspergillus niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) OX=425011 GN=rrp3 PE=3 SV=1 Length=467 Score = 130 bits (327), Expect = 4e-31, Method: Composition-based stats. Identities = 74/407 (18%), Positives = 129/407 (32%), Gaps = 53/407 (13%) Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 +P + L ++ L T + P LQ ++P + L P Sbjct 72 TPIQRESIPLALKGRDLIGLAE---TGSGKTAAFALPILQALMEKPQPFFGLVLA----P 124 Query 229 FGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR 286 +L ++ + G Q + L + + R+ HL Sbjct 125 TRELAYQISKSFESLGASMGVRSCVIVGGMDMVSQSISLGKKPHIIVATPGRLLD-HLEN 183 Query 287 YNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFD----DRKNELAHLA 342 L + +D L D + K + R LF + L + Sbjct 184 TKGFSLRNLKYLVMDEADRLLDMDFGPLLDKILKVLPRERRTFLFSATMSSKVESLQRAS 243 Query 343 THGPE-----NPKLEMLEKILQRQFSSSNSPR---------------GIIFTRTRQSAHS 382 P K + + +LQ + IIFTRT Sbjct 244 LSNPLRVSVSTSKYQTVSTLLQSYLFIPQKHKDLYLVYLLNEFAGQSTIIFTRTVNETQR 303 Query 383 LLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAE 442 L L+ +G G ++Q + + KF+ + N+LVAT VA Sbjct 304 LAFLLRA--------------LGFGAIPLHGQLSQSARLGALGKFRARSRNILVATDVAA 349 Query 443 EGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALE 500 GLDIP +VV+ + L + S V GR ARA +S A + E+ + + Sbjct 350 RGLDIPSVDVVLNFDLPGDSPSYVHRVGRTARAGKSGLAISFVAQYDVEVWLRIEGALGK 409 Query 501 TLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQF 547 L E + M + + Q+ A+ ++ ++ ++F Sbjct 410 KLKEYDCPKDEVM---VLGENVAEAQRQAIMDMKDYNEKKGSRGKKF 453 Score = 67.9 bits (164), Expect = 1e-10, Method: Composition-based stats. Identities = 66/424 (16%), Positives = 134/424 (32%), Gaps = 43/424 (10%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q E I AL+G+++I TG+GKT A A + + +E +VL L Q + Sbjct 75 QRESIPLALKGRDLIGLAETGSGKTAAFALPILQALMEKPQPFFGLVLAPTRELAYQISK 134 Query 66 EFRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 F + + G M + L + +++ T L L + + L Sbjct 135 SFESLGASMGVRSCVIVGGMDMVSQSISLGKKPHIIVATPGRLLDHLENTKG---FSLRN 191 Query 125 FSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLP---QVLGLTASPGTGGASKLDGA 181 +V+DE ++ + L + + LP + +A+ + S + Sbjct 192 LKYLVMDEADR--------LLDMDFGPLLDKILKVLPRERRTFLFSATMSSKVESLQRAS 243 Query 182 INHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIH 241 +++ L++ + Q LQ + P K +L + F + + Sbjct 244 LSNPLRV-----SVSTSKYQTVSTLLQSYLFIPQKHKDLYLVYLLNEFAGQSTIIFTRTV 298 Query 242 DHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVD 301 + + + +LS++A L L + R + ++ D + +VD Sbjct 299 NETQRLAFLLRALGFGAIPLHGQLSQSARLGALGKFRARSRNILVATDVAARGLDIPSVD 358 Query 302 ALAALQ------DFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLE 355 + + HR T + L F + + L G KL+ Sbjct 359 VVLNFDLPGDSPSYVHRVGRTAR---AGKSGLAISFVAQYDVEVWLRIEGALGKKLKE-- 413 Query 356 KILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHM 415 ++ A + + + R + G + M Sbjct 414 -------YDCPKDEVMVLGENVAEAQRQAIMDMKDYN-EKKGSRGKKFGGKRSRD---EM 462 Query 416 TQRD 419 Q + Sbjct 463 DQEE 466 >sp|Q8GY84|RH10_ARATH DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis thaliana OX=3702 GN=RH10 PE=1 SV=2 Length=456 Score = 130 bits (327), Expect = 4e-31, Method: Composition-based stats. Identities = 68/371 (18%), Positives = 124/371 (33%), Gaps = 44/371 (12%) Query 212 QQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAAL 271 ++P + C + + + + + + + G QQ + L + + Sbjct 84 RRPDPAFFACVLSPTRELAIQIAEQFEALGADISL-RCAVLVGGIDRMQQTIALGKRPHV 142 Query 272 AGLQEQRVY--ALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLL- 328 R++ + ++ L + + D L +DF + +I + L Sbjct 143 IVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLN-EDFEKSLNQILEEIPLERKTFLF 201 Query 329 -ALFDDRKNELAHLATHGPEN----PKLEMLEKILQRQ---------------FSSSNSP 368 A + +L P K ++ + Q+ S Sbjct 202 SATMTKKVRKLQRACLRNPVKIEAASKYSTVDTLKQQYRFVAAKYKDCYLVYILSEMPES 261 Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 +IFTRT L L L+ +G S MTQ + + KF+ Sbjct 262 TSMIFTRTCDGTRFLALVLRS--------------LGFRAIPISGQMTQSKRLGALNKFK 307 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGS 487 G N+LV T VA GLDIP +VV+ Y + TN + GR ARA +S Sbjct 308 AGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLV-NQ 366 Query 488 RELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQF 547 EL+ + +E L+ + + + R + L+ + + +R + Sbjct 367 YELEWYIQ---IEKLIGKKLPEYPAEEDEVLSLLERVAEAKKLSAMNMKESGGRKRRGED 423 Query 548 PVEHVQLLCIN 558 E + L N Sbjct 424 DEESERFLGGN 434 Score = 59.8 bits (143), Expect = 5e-08, Method: Composition-based stats. Identities = 51/329 (16%), Positives = 105/329 (32%), Gaps = 40/329 (12%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT-RAAAYVAKRHLETV---------DGAKVVV---L 53 Q E + ALEGK++I TG+GKT A + + LE V L Sbjct 36 QAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVL 95 Query 54 VNRVHLVTQHGEEFRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALT 112 L Q E+F + D L G + L + +++ T L ++ Sbjct 96 SPTRELAIQIAEQFEALGADISLRCAVLVGGIDRMQQTIALGKRPHVIVATPGRLWDHMS 155 Query 113 SPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLP---QVLGLTAS 169 + L +V+DE ++ + + Q + +P + +A+ Sbjct 156 DTKG---FSLKSLKYLVLDEADR--------LLNEDFEKSLNQILEEIPLERKTFLFSAT 204 Query 170 PGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPF 229 + + +++ A + Q + K L + S+ P Sbjct 205 MTKKVRKLQRACLRNPVKIEA---ASKYSTVDTLKQQYR-FVAAKYKDCYLVYILSEMP- 259 Query 230 GDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND 289 + + + D L + +++++ L L + + ++ D Sbjct 260 -ESTSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKFKAGECNILVCTD 318 Query 290 ALLIHDTVRAVDALAAL------QDFYHR 312 + +VD + +D+ HR Sbjct 319 VASRGLDIPSVDVVINYDIPTNSKDYIHR 347 >sp|Q6BGU8|DBP8_DEBHA ATP-dependent RNA helicase DBP8 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DBP8 PE=3 SV=2 Length=441 Score = 129 bits (325), Expect = 5e-31, Method: Composition-based stats. Identities = 65/408 (16%), Positives = 135/408 (33%), Gaps = 44/408 (11%) Query 149 YLELKLQRAQPLPQ-VLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQL 207 + L + P + GL +P A ++ + N+ I+ ++ Q Sbjct 55 FAAPMLTQWSEDPSGIYGLVLTPTRELALQIAEQFAALGS-SMNIKVSVIVGGEDIVKQA 113 Query 208 QEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSE 267 E ++P R + + + + + + + + + + Sbjct 114 LELQRRPHFVVATPGRLADHILNSGEDTVCGLRRVKYLILDEADRLLSNSFGGDLERCFN 173 Query 268 AAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRL 327 ++ ++ + AL + L F H + + + Sbjct 174 ILPSTDKRQTLLFTATVTDAVRALKDRPVPK-----GKLPVFIHEVETVDKVAIPSTLSV 228 Query 328 LALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWL 387 +F P K L IL + IIFT +A L L Sbjct 229 KYVFV-------------PSYVKEAYLHSILN--LPQYSDSLSIIFTNRTATAELLRRTL 273 Query 388 QQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDI 447 ++ + +S + M Q ++ + +F+ G +L+AT VA GLDI Sbjct 274 RKLE--------------FRVASLHSEMPQTERTNSLHRFKAGAAKILIATDVASRGLDI 319 Query 448 PHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQA 506 P +VV Y + + + GR ARA + A +++ R L A+E + + Sbjct 320 PTVELVVNYDIPADADDFIHRVGRTARAGRKGDAISIV-AEKDVDRIL---AIEERINKK 375 Query 507 VAAVQKMDQAEYQAKIRDLQQAALTKRAA-QAAQRENQRQQFPVEHVQ 553 + ++ + + L + ++ KR A REN ++ + + Sbjct 376 MDLIEDISDNKVIK--DSLNKTSVAKREAFMDMDRENFGEKRKINKSK 421 Score = 56.0 bits (133), Expect = 6e-07, Method: Composition-based stats. Identities = 28/129 (22%), Positives = 49/129 (38%), Gaps = 6/129 (5%) Query 15 LEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQ---HGEEFRRM 70 L+G + I TG+GKT A AA + + E G +VL L Q Sbjct 36 LKGHDCIGGAKTGSGKTIAFAAPMLTQWSEDPSGIYGLVLTPTRELALQIAEQFAALGSS 95 Query 71 LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV 130 ++ + +V D+ +A L R ++ T L + + E+ L +++ Sbjct 96 MNIKVSVIVGGEDIVKQAL--ELQRRPHFVVATPGRLADHILNSGEDTVCGLRRVKYLIL 153 Query 131 DECHHTHKD 139 DE + Sbjct 154 DEADRLLSN 162 >sp|A6SFW7|DBP2_BOTFB ATP-dependent RNA helicase dbp2 OS=Botryotinia fuckeliana (strain B05.10) OX=332648 GN=dbp2 PE=3 SV=3 Length=574 Score = 131 bits (330), Expect = 6e-31, Method: Composition-based stats. Identities = 71/403 (18%), Positives = 133/403 (33%), Gaps = 68/403 (17%) Query 130 VDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLC 189 DE Y +M++ P P +P + + V+ + Sbjct 153 FDEA----GFPAY--VMTEVKAQ----GFPAP-------TPIQSQGWPMALSGRDVVGIA 195 Query 190 ANLDTWCIMSPQNCCPQLQEHSQQPCKQY-NLCHRRSQDPFGDLLKKLMDQIHDHLEMPE 248 T + C P + + QP + P +L ++ +I + Sbjct 196 E---TGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQQEITKFGKSSR 252 Query 249 LSRK--FGTQMYEQQVVKLSEAAALAGLQEQRVY------ALHLRRYNDALLIHDTVRAV 300 + +G Q+ L++ + R+ +LRR L++ + R + Sbjct 253 IRNTCVYGGVPKGGQIRDLAKGVEVCIATPGRLIDMIESGKTNLRR-VTYLVLDEADRML 311 Query 301 D---------ALAALQDFYHREHVTKTQILC----AERRLLALFDDRKNELAHLATHG-- 345 D L ++ + T A L L A H Sbjct 312 DMGFEPQIRKILGQIRPDRQTCMWSATWPKEVRALASDYLNEFIQVNIGSLELSANHRIT 371 Query 346 ------PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIR 399 E K + + K L++ ++ + +IFT T++ A + +L+Q Sbjct 372 QIVEVVSEFEKRDKMTKHLEKIMEDKDN-KILIFTGTKRVADDITRFLRQD--------- 421 Query 400 AQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL 459 G S Q ++ V+ +F+ G ++VAT VA G+D+ + V Y Sbjct 422 -----GWPALSIHGDKQQNERDWVLNEFKTGKSPIMVATDVASRGIDVRNITHVFNYDYP 476 Query 460 TNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALE 500 N + GR RA Q A + T +++ R+L+N E Sbjct 477 NNSEDYIHRIGRTGRAGQKGTAITLFTTDNQKQARDLVNVLTE 519 Score = 52.1 bits (123), Expect = 1e-05, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 50/129 (39%), Gaps = 11/129 (9%) Query 14 ALEGKNIIIWLPTGAGKTRA----AAYVA--KRHLETVDGAKVVVLVNRVHLVTQHGEEF 67 AL G++++ TG+GKT A + L DG V+VL L Q +E Sbjct 185 ALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQQEI 244 Query 68 RRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS 126 + R T + G + LA+ ++ I T L + S + L + Sbjct 245 TKFGKSSRIRNTCVYGGVPKGGQIRDLAKGVEVCIATPGRLIDMIESGKTN----LRRVT 300 Query 127 LIVVDECHH 135 +V+DE Sbjct 301 YLVLDEADR 309 >sp|P0CQ74|DED1_CRYNJ ATP-dependent RNA helicase ded1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=DED1 PE=3 SV=1 Length=637 Score = 132 bits (331), Expect = 6e-31, Method: Composition-based stats. Identities = 54/282 (19%), Positives = 97/282 (34%), Gaps = 46/282 (16%) Query 253 FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR-----RYNDALLIHDTVRAVDALAALQ 307 +G Q+ L L R+ L R L++ + R +D + Sbjct 282 YGGADIGSQMRALDRGCDLLSATPGRLVDLIERGKISLANVKYLVLDEADRMLDM--GFE 339 Query 308 DFYHREHVTKTQILCAERRLLALFDDRKNELAHLA-----------------THGPENPK 350 R + ER+ L E+ +LA T + Sbjct 340 PQIRRIVDEEDMPGVLERQTLMFSATFPREIQNLARSFLKEYIFLTVGRVGSTSENITQR 399 Query 351 LEMLEKILQRQF------SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI 404 +E ++ +R + + ++F T++ A +L +L ++ Sbjct 400 VEYVDDQDKRSLLLDLLLAEQSGGLILVFVETKRMADTLCDFLCSRR------------- 446 Query 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 +S TQR+++ + F+ G +LVAT+VA GLDIP+ V+ Y L + Sbjct 447 -HNATSIHGDRTQREREAALYAFKSGRAPILVATAVAARGLDIPNVTHVILYDLPNDVAE 505 Query 465 MVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLME 504 GR RA + G+ + ++LI E E Sbjct 506 YTHRIGRTGRAGNVGTSTAFFNRGNTNIGKDLIELLKEANQE 547 Score = 46.3 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 31/141 (22%), Positives = 47/141 (33%), Gaps = 25/141 (18%) Query 16 EGKNIIIWLPTGAGKT------RAAAYVAKRHLET----------VDGAKV----VVLVN 55 +G++++ TG+GKT +A KV +VL Sbjct 196 DGRDLMACAQTGSGKTGGFLFPILSALFTYGPSTPPVEQDTGYGYRRTKKVYPTALVLAP 255 Query 56 RVHLVTQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP 114 LV+Q EE R+ W + G + L R DLL T L + Sbjct 256 TRELVSQIHEEARKFAYRSWVRPAVVYGGADIGSQMRALDRGCDLLSATPGRLVDLI--- 312 Query 115 EEEEHVELTVFSLIVVDECHH 135 E + L +V+DE Sbjct 313 -ERGKISLANVKYLVLDEADR 332 >sp|P0CQ75|DED1_CRYNB ATP-dependent RNA helicase ded1 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=DED1 PE=3 SV=1 Length=637 Score = 132 bits (331), Expect = 6e-31, Method: Composition-based stats. Identities = 54/282 (19%), Positives = 97/282 (34%), Gaps = 46/282 (16%) Query 253 FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR-----RYNDALLIHDTVRAVDALAALQ 307 +G Q+ L L R+ L R L++ + R +D + Sbjct 282 YGGADIGSQMRALDRGCDLLSATPGRLVDLIERGKISLANVKYLVLDEADRMLDM--GFE 339 Query 308 DFYHREHVTKTQILCAERRLLALFDDRKNELAHLA-----------------THGPENPK 350 R + ER+ L E+ +LA T + Sbjct 340 PQIRRIVDEEDMPGVLERQTLMFSATFPREIQNLARSFLKEYIFLTVGRVGSTSENITQR 399 Query 351 LEMLEKILQRQF------SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI 404 +E ++ +R + + ++F T++ A +L +L ++ Sbjct 400 VEYVDDQDKRSLLLDLLLAEQSGGLILVFVETKRMADTLCDFLCSRR------------- 446 Query 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 +S TQR+++ + F+ G +LVAT+VA GLDIP+ V+ Y L + Sbjct 447 -HNATSIHGDRTQREREAALYAFKSGRAPILVATAVAARGLDIPNVTHVILYDLPNDVAE 505 Query 465 MVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLME 504 GR RA + G+ + ++LI E E Sbjct 506 YTHRIGRTGRAGNVGTSTAFFNRGNTNIGKDLIELLKEANQE 547 Score = 46.3 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 31/141 (22%), Positives = 47/141 (33%), Gaps = 25/141 (18%) Query 16 EGKNIIIWLPTGAGKT------RAAAYVAKRHLET----------VDGAKV----VVLVN 55 +G++++ TG+GKT +A KV +VL Sbjct 196 DGRDLMACAQTGSGKTGGFLFPILSALFTYGPSTPPVEQDTGYGYRRTKKVYPTALVLAP 255 Query 56 RVHLVTQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP 114 LV+Q EE R+ W + G + L R DLL T L + Sbjct 256 TRELVSQIHEEARKFAYRSWVRPAVVYGGADIGSQMRALDRGCDLLSATPGRLVDLI--- 312 Query 115 EEEEHVELTVFSLIVVDECHH 135 E + L +V+DE Sbjct 313 -ERGKISLANVKYLVLDEADR 332 >sp|A7E449|DBP2_SCLS1 ATP-dependent RNA helicase dbp2 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 GN=dbp2 PE=3 SV=1 Length=572 Score = 131 bits (329), Expect = 7e-31, Method: Composition-based stats. Identities = 71/403 (18%), Positives = 133/403 (33%), Gaps = 68/403 (17%) Query 130 VDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLC 189 DE Y +M++ P P +P + + V+ + Sbjct 151 FDEA----GFPAY--VMTEVKAQ----GFPAP-------TPIQSQGWPMALSGRDVVGIA 193 Query 190 ANLDTWCIMSPQNCCPQLQEHSQQPCKQY-NLCHRRSQDPFGDLLKKLMDQIHDHLEMPE 248 T + C P + + QP + P +L ++ +I + Sbjct 194 E---TGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQQEITKFGKSSR 250 Query 249 LSRK--FGTQMYEQQVVKLSEAAALAGLQEQRVY------ALHLRRYNDALLIHDTVRAV 300 + +G Q+ L++ + R+ +LRR L++ + R + Sbjct 251 IRNTCVYGGVPKGGQIRDLAKGVEVCIATPGRLIDMIESGKTNLRR-VTYLVLDEADRML 309 Query 301 D---------ALAALQDFYHREHVTKTQILC----AERRLLALFDDRKNELAHLATHG-- 345 D L ++ + T A L L A H Sbjct 310 DMGFEPQIRKILGQIRPDRQTCMWSATWPKEVRALASDYLNDFIQVNIGSLELSANHRIT 369 Query 346 ------PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIR 399 E K + + K L++ ++ + +IFT T++ A + +L+Q Sbjct 370 QIVEVVSEFEKRDKMTKHLEKIMEDKDN-KILIFTGTKRVADDITRFLRQD--------- 419 Query 400 AQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL 459 G S Q ++ V+ +F+ G ++VAT VA G+D+ + V Y Sbjct 420 -----GWPALSIHGDKQQNERDWVLNEFKTGKSPIMVATDVASRGIDVRNITHVFNYDYP 474 Query 460 TNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALE 500 N + GR RA Q A + T +++ R+L+N E Sbjct 475 NNSEDYIHRIGRTGRAGQKGTAITLFTTDNQKQARDLVNVLTE 517 Score = 52.1 bits (123), Expect = 1e-05, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 50/129 (39%), Gaps = 11/129 (9%) Query 14 ALEGKNIIIWLPTGAGKTRA----AAYVA--KRHLETVDGAKVVVLVNRVHLVTQHGEEF 67 AL G++++ TG+GKT A + L DG V+VL L Q +E Sbjct 183 ALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQQEI 242 Query 68 RRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS 126 + R T + G + LA+ ++ I T L + S + L + Sbjct 243 TKFGKSSRIRNTCVYGGVPKGGQIRDLAKGVEVCIATPGRLIDMIESGKTN----LRRVT 298 Query 127 LIVVDECHH 135 +V+DE Sbjct 299 YLVLDEADR 307 >sp|Q2H720|DBP2_CHAGB ATP-dependent RNA helicase DBP2 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=DBP2 PE=3 SV=1 Length=562 Score = 131 bits (329), Expect = 7e-31, Method: Composition-based stats. Identities = 41/208 (20%), Positives = 80/208 (38%), Gaps = 19/208 (9%) Query 297 VRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEK 356 R +A R + + + ++ + + + E+ K + + K Sbjct 314 DRQTCMWSATWPKEVRALASDFLTDFIQVNIGSMDLAANHRITQVVEVVNESEKRDKMIK 373 Query 357 ILQRQFSSSNSP-RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHM 415 L++ S + +IFT T++ A + +L+Q G S Sbjct 374 HLEKIMEDKESQNKILIFTGTKRVADEITRFLRQD--------------GWPALSIHGDK 419 Query 416 TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR---GRA 472 Q ++ V+ +F+ G ++VAT VA G+D+ + V+ Y N + GRA Sbjct 420 QQNERDWVLDQFKTGKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRA 479 Query 473 RADQSVYAFVATEGSRELKRELINEALE 500 A + F T+ S++ R+L+ E Sbjct 480 GAKGTAITFFTTDNSKQ-ARDLVGVLQE 506 Score = 53.3 bits (126), Expect = 6e-06, Method: Composition-based stats. Identities = 32/129 (25%), Positives = 49/129 (38%), Gaps = 11/129 (9%) Query 14 ALEGKNIIIWLPTGAGKTRA----AAYVA--KRHLETVDGAKVVVLVNRVHLVTQHGEEF 67 AL G++++ TG+GKT A + L DG V+VL L Q +E Sbjct 170 ALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQQEI 229 Query 68 RRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS 126 + R T + G + L+R ++ I T L L E L + Sbjct 230 TKFGKSSRIRNTCVYGGVPKGPQTRDLSRGVEVCIATPGRLIDML----ESGRTNLRRVT 285 Query 127 LIVVDECHH 135 +V+DE Sbjct 286 YLVLDEADR 294 >sp|Q6FLF3|DBP2_CANGA ATP-dependent RNA helicase DBP2 OS=Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DBP2 PE=3 SV=1 Length=544 Score = 131 bits (328), Expect = 7e-31, Method: Composition-based stats. Identities = 61/319 (19%), Positives = 113/319 (35%), Gaps = 48/319 (15%) Query 228 PFGDLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEAAALAGLQEQRVY----- 280 P +L ++ + + + +G QQ+ +L A + R+ Sbjct 191 PTRELAVQIQKECSKFGKSSRIRNTCVYGGVPRGQQIRELIRGAEIVIATPGRLIDMLEA 250 Query 281 -ALHLRRYNDALLIHDTVRAVD---------ALAALQDFYHREHVTKTQILCAER----R 326 +L+R L++ + R +D + ++ + T ++ Sbjct 251 GKTNLKR-VTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVQQLARDY 309 Query 327 LLALFDDRKNELAHLATHG--------PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQ 378 L + L A+H E K + L K L S + +IF T++ Sbjct 310 LNDPIQVQIGSLELAASHNITQLVEVVSEFEKRDRLVKHLDTA-SQDKESKILIFASTKR 368 Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT 438 + + +L+Q G + QR++ V+ +F+ G ++VAT Sbjct 369 TCDEITSYLRQD--------------GWPALAIHGDKDQRERDWVLNEFRTGNSPIMVAT 414 Query 439 SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELIN 496 VA G+D+ N VV Y + N V GR RA + A TE ++ L LI+ Sbjct 415 DVAARGIDVKGINFVVNYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEDNKSLGASLIS 474 Query 497 EALETLMEQAVAAVQKMDQ 515 E + + K D+ Sbjct 475 IMREA-KQNIPEELMKYDR 492 Score = 52.5 bits (124), Expect = 1e-05, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 50/129 (39%), Gaps = 11/129 (9%) Query 14 ALEGKNIIIWLPTGAGKTR------AAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEF 67 AL G++++ TG+GKT A+ L DG V+VL L Q +E Sbjct 144 ALSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQKEC 203 Query 68 RRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS 126 + R T + G + L R +++I T L L + + L + Sbjct 204 SKFGKSSRIRNTCVYGGVPRGQQIRELIRGAEIVIATPGRLIDMLEAGKTN----LKRVT 259 Query 127 LIVVDECHH 135 +V+DE Sbjct 260 YLVLDEADR 268 >sp|Q6CCZ1|PRP5_YARLI Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=PRP5 PE=3 SV=1 Length=974 Score = 132 bits (333), Expect = 9e-31, Method: Composition-based stats. Identities = 77/405 (19%), Positives = 144/405 (36%), Gaps = 56/405 (14%) Query 139 DTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIM 198 + + + + L A P LG+ +P ++ + L L C Sbjct 438 RHIKHRVGVETHTTTLSGASSHP--LGVIITPTRELCVQIYRDLRPFLA-ALELTAVCAY 494 Query 199 S---PQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGT 255 ++ L++ + R D +++ + + + + Sbjct 495 GGSPIKDQIAALKKGTHI----IVCTPGRMIDLLAANQGRVLSLSRVTFLVIDEADRMFD 550 Query 256 QMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHV 315 +E QV+KL+++ Q A ++ + R+ D+L ++ V Sbjct 551 MGFEPQVLKLTQSIRPDR-QTVLFSATFPKKMEQLARRVLSKRSSDSLGPIEIIVGARSV 609 Query 316 TKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNS-------- 367 ++I + + +F + K++ L LE+L K + F S Sbjct 610 VASEIT----QFVEVFQNEKSKFPRL---------LEVLGKYFAQGFFDEQSEGRVGTGE 656 Query 368 --------PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRD 419 P+ +IF ++SA SLL L Q G S Q D Sbjct 657 SAATPIPNPKCLIFVERQESADSLLKELIQS--------------GYPCLSIHGGKEQAD 702 Query 420 QQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSV 478 + + I F+ G +++L+ATSVA GLD+ +VV + + V GR RA Q Sbjct 703 RDQAISDFKSGLVSVLIATSVAARGLDVKGLGLVVNWDSPNHMEDYVHRVGRTGRAGQKG 762 Query 479 YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIR 523 A +E I+ A+++ A VQ M + ++ K+R Sbjct 763 TALTFLLSDQERLAAEISRAIKSSGNAPPAPVQLMTE-RFEFKVR 806 Score = 62.5 bits (150), Expect = 1e-08, Method: Composition-based stats. Identities = 43/251 (17%), Positives = 83/251 (33%), Gaps = 41/251 (16%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKV--------------VV 52 Q + I + G+++I TG+GKT A RH++ G + V+ Sbjct 405 QAQAIPAVMSGRDVISVAKTGSGKTLAFLLPMLRHIKHRVGVETHTTTLSGASSHPLGVI 464 Query 53 LVNRVHLVTQHGEEFRRMLDGRWTVTTLS--GDMGPRAGFGHLARCHDLLICTAELLQMA 110 + L Q + R L +T + G + L + +++CT + Sbjct 465 ITPTRELCVQIYRDLRPFL-AALELTAVCAYGGSPIKDQIAALKKGTHIIVCTPGRMIDL 523 Query 111 LTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASP 170 L + + + L+ + +V+DE + PQVL LT S Sbjct 524 LAANQGR-VLSLSRVTFLVIDEADR------------------MFDMGFEPQVLKLTQSI 564 Query 171 GTGGASKLDGA-----INHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRS 225 + L A + + + + + + P + Q+ + Sbjct 565 RPDRQTVLFSATFPKKMEQLARRVLSKRSSDSLGPIEIIVGARSVVASEITQFVEVFQNE 624 Query 226 QDPFGDLLKKL 236 + F LL+ L Sbjct 625 KSKFPRLLEVL 635 >sp|A6RGE3|DBP2_AJECN ATP-dependent RNA helicase DBP2 OS=Ajellomyces capsulatus (strain NAm1 / WU24) OX=2059318 GN=DBP2 PE=3 SV=1 Length=542 Score = 130 bits (327), Expect = 9e-31, Method: Composition-based stats. Identities = 41/207 (20%), Positives = 77/207 (37%), Gaps = 16/207 (8%) Query 297 VRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEK 356 R +A R+ + + ++ + + + E K + + K Sbjct 303 DRQTCMWSATWPKDVRQLAQDFLHDYIQVNIGSMDLSANHRITQIVEIVSEFEKRDRMAK 362 Query 357 ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT 416 L R ++ + +IFT T++ A + +L+Q G S Sbjct 363 HLDRIMEANKHSKVLIFTGTKRVADDITRFLRQD--------------GWPALSIHGDKQ 408 Query 417 QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARAD 475 Q ++ V+ +F+ G ++VAT VA G+D+ V+ Y N V GR RA Sbjct 409 QNERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAG 468 Query 476 QSVYAF-VATEGSRELKRELINEALET 501 A + T + + R+L+ E+ Sbjct 469 AKGTAITLFTTDNAKQARDLVAILSES 495 Score = 52.1 bits (123), Expect = 1e-05, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 48/129 (37%), Gaps = 11/129 (9%) Query 14 ALEGKNIIIWLPTGAGKTRA----AAYVA--KRHLETVDGAKVVVLVNRVHLVTQHGEEF 67 AL G++++ TG+GKT A + L DG V+VL L Q E Sbjct 159 ALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQTEI 218 Query 68 RRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS 126 + R T + G + L R ++ I T L L + + L + Sbjct 219 TKFGKSSRIRNTCVYGGVPKGPQIRDLTRGVEVCIATPGRLIDMLEAGKTN----LRRVT 274 Query 127 LIVVDECHH 135 +V+DE Sbjct 275 YLVLDEADR 283 >sp|Q5B5E7|RRP3_EMENI ATP-dependent rRNA helicase rrp3 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=rrp3 PE=3 SV=1 Length=465 Score = 129 bits (324), Expect = 1e-30, Method: Composition-based stats. Identities = 74/406 (18%), Positives = 132/406 (33%), Gaps = 52/406 (13%) Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 +P A L V+ L T + P LQ + P + L P Sbjct 70 TPIQSQAIPLALEGRDVIGLAE---TGSGKTAAFALPMLQALMEAPQTLFGLVLA----P 122 Query 229 FGDLLKKLMDQIHDHLEMPELSRKF--GTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR 286 +L ++ + G Q + L + + R+ HL Sbjct 123 TRELAYQISQAFETLGSTIGVRCAVIVGGMDMVAQSIALGKKPHIIVATPGRLLD-HLEN 181 Query 287 YNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNELAHLA 342 L + A+D L D E + K + R LF + L + Sbjct 182 TKGFSLRNLKYLAIDEADRLLDMDFGESLDKIIRILPRTRHTYLFSATMSTKVESLQRAS 241 Query 343 THGPE----NPKLEMLEKILQRQFSSSNSPR---------------GIIFTRTRQSAHSL 383 P + K + + + + + IIFT T + Sbjct 242 LSNPVRVSVSSKYQTVSTLQSSYICIPHKHKNLYLVYLLNEFAGQSAIIFTTTVHETQRV 301 Query 384 LLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEE 443 L+ +G G ++Q + + KF+ + ++LVAT VA Sbjct 302 AFMLRA--------------LGFGAIPLHGQLSQSARLGALGKFRSRSRDILVATDVAAR 347 Query 444 GLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALET 501 GLDIP +VV + L + + + GR ARA +S A T+ E+ + + + Sbjct 348 GLDIPSVDVVFNFDLPMDSKTYIHRVGRTARAGKSGVAISFVTQYDVEVWLRIEHALSKK 407 Query 502 LMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQF 547 L E V + M +E A + + A + + ++ + ++F Sbjct 408 LPEYQVEKDEVMVMSERVA---EASRQATIEMKSFDEKKGARGKKF 450 Score = 59.4 bits (142), Expect = 6e-08, Method: Composition-based stats. Identities = 30/131 (23%), Positives = 48/131 (37%), Gaps = 5/131 (4%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKV-VVLVNRVHLVTQHGE 65 Q + I ALEG+++I TG+GKT A A + L +VL L Q + Sbjct 73 QSQAIPLALEGRDVIGLAETGSGKTAAFALPMLQALMEAPQTLFGLVLAPTRELAYQISQ 132 Query 66 EFRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 F + + G M A L + +++ T L L + + L Sbjct 133 AFETLGSTIGVRCAVIVGGMDMVAQSIALGKKPHIIVATPGRLLDHLENTKG---FSLRN 189 Query 125 FSLIVVDECHH 135 + +DE Sbjct 190 LKYLAIDEADR 200 >sp|Q0ILZ4|RH9_ORYSJ DEAD-box ATP-dependent RNA helicase 9 OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0611200 PE=2 SV=1 Length=628 Score = 131 bits (329), Expect = 1e-30, Method: Composition-based stats. Identities = 56/301 (19%), Positives = 104/301 (35%), Gaps = 52/301 (17%) Query 230 GDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND 289 L K +++ E +G QQ+ +L+ + RV L R Sbjct 181 TRELAKQVEREFSDSSNVETICVYGGTPISQQIRQLNYGVDVVIGTPGRVIDLLKR---G 237 Query 290 ALLIHDTVRAV-DALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNELAHLATH 344 AL + + V D + E V +R +F L Sbjct 238 ALNLSEVRFVVLDEADQMLSVGFDEDVETILDRVPPKRQTLMFSATMPTWIQRLTQKYLK 297 Query 345 GPE-------------------------NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQS 379 P + K +L ++++ + + I+FT+T++ Sbjct 298 NPVTIDLVGEDDQKLAEGISLYSIASEGHAKPAVLGELIKEH---AKGGKCIVFTQTKRD 354 Query 380 AHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATS 439 A L + + + Q L G +TQ ++ ++ F++G N+L+AT Sbjct 355 ADRLSYTMGR-------SFQCQALHG--------DITQAQRERTLKGFREGHFNILIATD 399 Query 440 VAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEA 498 VA GLDIP+ ++V+ + L + V GR RA + A V + ++ Sbjct 400 VAARGLDIPNVDLVIHFELPNSSELFVHRSGRTGRAGKKGKAIVMHSYQQSRAIRMVEND 459 Query 499 L 499 + Sbjct 460 V 460 Score = 54.4 bits (129), Expect = 2e-06, Method: Composition-based stats. Identities = 28/134 (21%), Positives = 49/134 (37%), Gaps = 13/134 (10%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTR---AAAY--VAKRHLETVDGA--KVVVLVNRVHL 59 Q V+ PA++GK+++ TG GKT + + + + G +VL L Sbjct 125 QRAVLEPAMQGKDMVGRAKTGTGKTLAFGIPILDAIIRHNEKNSPGKFPLAIVLAPTREL 184 Query 60 VTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 Q EF + + G L D++I T + L + Sbjct 185 AKQVEREFSDSSN--VETICVYGGTPISQQIRQLNYGVDVVIGTPGRVIDLL----KRGA 238 Query 120 VELTVFSLIVVDEC 133 + L+ +V+DE Sbjct 239 LNLSEVRFVVLDEA 252 >sp|Q755N4|DBP2_EREGS ATP-dependent RNA helicase DBP2 OS=Eremothecium gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=DBP2 PE=3 SV=2 Length=557 Score = 130 bits (327), Expect = 1e-30, Method: Composition-based stats. Identities = 60/311 (19%), Positives = 107/311 (34%), Gaps = 53/311 (17%) Query 228 PFGDLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEAAALAGLQEQRVY----- 280 P +L ++ + + +G QQ+ L + R+ Sbjct 195 PTRELAVQIQKECSKFGRSSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEI 254 Query 281 -ALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELA 339 +L+R L++ + R +D Q R+ V + + A + +LA Sbjct 255 GKTNLKR-VTYLVLDEADRMLDMGFEPQ---IRKIVDQIRPDRQTLMWSATWPKEVQQLA 310 Query 340 HLATHGP------------------------ENPKLEMLEKILQRQFSSSNSPRGIIFTR 375 H P + K + L K L S + IIF Sbjct 311 RDYLHDPIQVNIGSLELAASHTITQLVEVVSDFDKRDRLVKHL-EIASKDKDSKIIIFAS 369 Query 376 TRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLL 435 T+++ + +L+Q G + Q+++ V+ +F+ G ++ Sbjct 370 TKRTCDEITSYLRQD--------------GWPALAIHGDKQQQERDWVLNEFRTGRSPIM 415 Query 436 VATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRE 493 VAT VA G+D+ N V+ Y + N V GR RA + A TE ++ L + Sbjct 416 VATDVAARGIDVKGINFVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEANKTLGAQ 475 Query 494 LINEALETLME 504 LI+ E E Sbjct 476 LISIMREAKQE 486 Score = 54.4 bits (129), Expect = 2e-06, Method: Composition-based stats. Identities = 34/129 (26%), Positives = 49/129 (38%), Gaps = 11/129 (9%) Query 14 ALEGKNIIIWLPTGAGKTR------AAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEF 67 AL G+++I TG+GKT A+ L DG V+VL L Q +E Sbjct 148 ALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPVVLVLAPTRELAVQIQKEC 207 Query 68 RRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS 126 + R T + G + L R ++LI T L L E L + Sbjct 208 SKFGRSSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDML----EIGKTNLKRVT 263 Query 127 LIVVDECHH 135 +V+DE Sbjct 264 YLVLDEADR 272 >sp|Q7SBC6|DBP2_NEUCR ATP-dependent RNA helicase dbp2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=drh-1 PE=3 SV=2 Length=562 Score = 130 bits (327), Expect = 1e-30, Method: Composition-based stats. Identities = 60/342 (18%), Positives = 117/342 (34%), Gaps = 50/342 (15%) Query 193 DTWCIMSPQNCCPQLQEHSQQPCKQY-NLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSR 251 +T + C P + + QP + P +L ++ +I + + Sbjct 177 ETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLILAPTRELAVQIQQEISKFGKSSRIRN 236 Query 252 K--FGTQMYEQQVVKLSEAAALAGLQEQRVY------ALHLRRYNDALLIHDTVRAVDA- 302 +G Q+ LS + R+ +LRR L++ + R +D Sbjct 237 TCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLESGKTNLRR-VTYLVLDEADRMLDMG 295 Query 303 --------------------LAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLA 342 +A R + + ++ + + + Sbjct 296 FEPQIRKIIGQIRPDRQTLMWSATWPKEVRNLAADFLTDFIQVNIGSMDLAANHRITQIV 355 Query 343 THGPENPKLEMLEKILQRQFSS-SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQ 401 E+ K + + K L++ N + +IFT T++ A + +L+Q Sbjct 356 EVVSESEKRDRMIKHLEKIMEGRENQNKILIFTGTKRVADDITRFLRQD----------- 404 Query 402 LLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN 461 G S Q ++ V+ +F+ G ++VAT VA G+D+ + V+ Y N Sbjct 405 ---GWPALSIHGDKQQNERDWVLDQFKTGKSPIMVATDVASRGIDVRNITHVLNYDYPNN 461 Query 462 EISMVQAR---GRARADQSVYAFVATEGSRELKRELINEALE 500 + GRA A + F T+ S++ REL+ E Sbjct 462 SEDYIHRIGRTGRAGAKGTAITFFTTDNSKQ-ARELVGVLQE 502 Score = 53.6 bits (127), Expect = 4e-06, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 50/129 (39%), Gaps = 11/129 (9%) Query 14 ALEGKNIIIWLPTGAGKTRA----AAYVA--KRHLETVDGAKVVVLVNRVHLVTQHGEEF 67 AL G++++ TG+GKT A + L DG V++L L Q +E Sbjct 166 ALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLILAPTRELAVQIQQEI 225 Query 68 RRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS 126 + R T + G + L+R ++ I T L L S + L + Sbjct 226 SKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLESGKTN----LRRVT 281 Query 127 LIVVDECHH 135 +V+DE Sbjct 282 YLVLDEADR 290 >sp|A3LP87|DBP8_PICST ATP-dependent RNA helicase DBP8 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) OX=322104 GN=DBP8 PE=3 SV=2 Length=445 Score = 128 bits (322), Expect = 1e-30, Method: Composition-based stats. Identities = 58/394 (15%), Positives = 135/394 (34%), Gaps = 45/394 (11%) Query 163 VLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCH 222 + GL +P A ++ + N+ ++ ++ Q E ++P Sbjct 70 IFGLVLTPTRELALQIAEQFAALGA-SMNIKISVVVGGEDFVKQTLELQKKPHFVIATPG 128 Query 223 RRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYAL 282 R + + + + + + + + + + + + ++ ++ Sbjct 129 RLADHILNSGEETISGLRRIKYLVLDEADRLLSNSFGGDLERCFSVLPPSEKRQTCLFTA 188 Query 283 HLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLA 342 + AL + + F H + + + +F Sbjct 189 TVTDAVRALKEKPPAQGKPPV-----FLHEVETVDQVAIPSTLSIKYVFV---------- 233 Query 343 THGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL 402 P K L IL+ +IF +A L L++ + Sbjct 234 ---PSYVKEAYLNSILR--LPQYEKSTAVIFVNRTTTAEVLRRTLRKLE----------- 277 Query 403 LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE 462 +S + M Q ++ +Q+F+ G +L+AT VA GLDIP +VV + + + Sbjct 278 ---FRVASLHSEMPQSERTNSVQRFKAGAARILIATDVASRGLDIPSVELVVNFDIPADP 334 Query 463 ISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK 521 + GR ARA +S A +++ R + ++ E+ ++ +++ + Sbjct 335 DDFIHRVGRTARAGRSGDAVTII-AEKDIDR------IASIEERINKKMELLEEVTDDSV 387 Query 522 IRD-LQQAALTKRAA-QAAQRENQRQQFPVEHVQ 553 I D L ++ KR + +EN ++ + + Sbjct 388 ITDSLTATSVAKRESLMEMDKENFGEKRKINRKK 421 Score = 50.6 bits (119), Expect = 4e-05, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 46/129 (36%), Gaps = 6/129 (5%) Query 15 LEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQ---HGEEFRRM 70 L G + I TG+GKT A AA + + E G +VL L Q Sbjct 36 LSGHDCIGGAKTGSGKTIAFAAPMLTQWSEDPFGIFGLVLTPTRELALQIAEQFAALGAS 95 Query 71 LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV 130 ++ + +V D + L + +I T L + + EE L +V+ Sbjct 96 MNIKISVVVGGEDFVKQTL--ELQKKPHFVIATPGRLADHILNSGEETISGLRRIKYLVL 153 Query 131 DECHHTHKD 139 DE + Sbjct 154 DEADRLLSN 162 >sp|Q6C4D4|DBP2_YARLI ATP-dependent RNA helicase DBP2 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DBP2 PE=3 SV=1 Length=552 Score = 130 bits (326), Expect = 1e-30, Method: Composition-based stats. Identities = 59/304 (19%), Positives = 109/304 (36%), Gaps = 47/304 (15%) Query 228 PFGDLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEAAALAGLQEQRVY----- 280 P +L ++ + + ++ +G QQ+ L+ + R+ Sbjct 197 PTRELAVQIQQECSKFGKSSKIRNTCVYGGVPRGQQIRDLARGVEIVIATPGRLLDMLES 256 Query 281 -ALHLRRYNDALLIHDTVRAVD---------ALAALQDFYHREHVTKTQILCAER----R 326 +LRR L++ + R +D + ++ + T +R Sbjct 257 GKTNLRR-VTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVQRLAHDY 315 Query 327 LLALFDDRKNELAHLATHG--------PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQ 378 L L A+H E K + L K L + + +IFT T++ Sbjct 316 LKDQIQVNIGSLELSASHNITQVVEVCTEYEKRDRLVKHL-ETVMENKESKCLIFTGTKR 374 Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT 438 A + +L+Q G + Q+++ V+ +F+ G ++VAT Sbjct 375 VADDITKFLRQD--------------GWPALAIHGDKQQQERDWVLNEFRQGKSPIMVAT 420 Query 439 SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFV-ATEGSRELKRELIN 496 VA G+D+ N V+ Y +N V GR RA A+ TE +R+ R+L+ Sbjct 421 DVASRGIDVKGINFVINYDYPSNSEDYVHRIGRTGRAGTKGTAYTYFTEDNRKQARDLLV 480 Query 497 EALE 500 E Sbjct 481 ILRE 484 Score = 55.2 bits (131), Expect = 1e-06, Method: Composition-based stats. Identities = 33/129 (26%), Positives = 52/129 (40%), Gaps = 11/129 (9%) Query 14 ALEGKNIIIWLPTGAGKTRA----AAYVA--KRHLETVDGAKVVVLVNRVHLVTQHGEEF 67 AL G+++I TG+GKT + A + L DG V+VL L Q +E Sbjct 150 ALTGRDVIGIASTGSGKTLSYCLPAIVHINAQPMLSHGDGPIVLVLAPTRELAVQIQQEC 209 Query 68 RRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS 126 + + T + G + LAR +++I T L L S + L + Sbjct 210 SKFGKSSKIRNTCVYGGVPRGQQIRDLARGVEIVIATPGRLLDMLESGKTN----LRRVT 265 Query 127 LIVVDECHH 135 +V+DE Sbjct 266 YLVLDEADR 274 >sp|Q4X195|DBP2_ASPFU ATP-dependent RNA helicase dbp2 OS=Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293) OX=330879 GN=dbp2 PE=3 SV=2 Length=547 Score = 130 bits (326), Expect = 2e-30, Method: Composition-based stats. Identities = 42/207 (20%), Positives = 81/207 (39%), Gaps = 19/207 (9%) Query 297 VRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEK 356 R +A R+ T + + ++ + + + + K + + K Sbjct 299 DRQTCMWSATWPKEVRQLATDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIK 358 Query 357 ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT 416 L++ + S + +IFT T++ A + +L+Q G S Sbjct 359 HLEKIME-NRSNKCLIFTGTKRIADEITRFLRQD--------------GWPALSIHGDKQ 403 Query 417 QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR---GRAR 473 Q+++ V+ +F+ G ++VAT VA G+D+ V+ Y N + GRA Sbjct 404 QQERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYIHRIGRTGRAG 463 Query 474 ADQSVYAFVATEGSRELKRELINEALE 500 A + F TE S++ R+L+ E Sbjct 464 AKGTAITFFTTENSKQ-ARDLVTILTE 489 Score = 53.6 bits (127), Expect = 4e-06, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 48/129 (37%), Gaps = 11/129 (9%) Query 14 ALEGKNIIIWLPTGAGKTRA----AAYVA--KRHLETVDGAKVVVLVNRVHLVTQHGEEF 67 AL G++++ TG+GKT A + L DG V++L L Q E Sbjct 155 ALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLILAPTRELAVQIQAEI 214 Query 68 RRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS 126 + R T + G + L+R ++ I T L L E L + Sbjct 215 SKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDML----EAGRTNLRRVT 270 Query 127 LIVVDECHH 135 +V+DE Sbjct 271 YLVLDEADR 279 >sp|Q5VQL1|RH14_ORYSJ DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0172200 PE=2 SV=1 Length=708 Score = 131 bits (329), Expect = 2e-30, Method: Composition-based stats. Identities = 62/300 (21%), Positives = 102/300 (34%), Gaps = 62/300 (21%) Query 227 DPFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAAALAGLQEQRVY-ALH 283 P +L ++ D+ +S +G Q+ L A + R+ L Sbjct 259 SPTRELATQIQDEAKKFGRSSRISSVCLYGGAPKGPQLRDLERGADIVVATPGRLNDILE 318 Query 284 LRRY----NDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELA 339 +RR L++ + R +D + + + + +R+ L E+ Sbjct 319 MRRVSLHQVSYLVLDEADRMLDM--GFEPQIRKI----VKQVQPKRQTLMFTATWPKEVR 372 Query 340 HLATHGPENP----------------------------KLEMLEKILQRQFSSSNSPRGI 371 +A+ NP K L++IL+ Q + I Sbjct 373 KIASDLLSNPVQVNIGNTDQLVANKSITQYVDVITPPEKSRRLDQILRSQ---EPGSKII 429 Query 372 IFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGT 431 IF T++ L L +Q G S+ +Q ++ V+ +F+ G Sbjct 430 IFCSTKRMCDQLARNLARQ---------------YGASAIHGDKSQAERDSVLSEFRSGR 474 Query 432 LNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR---GRARADQSVYAFVATEGSR 488 +LVAT VA GLDI VVV Y T V GRA A Y F + S+ Sbjct 475 CPILVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFCDQDSK 534 Score = 59.8 bits (143), Expect = 6e-08, Method: Composition-based stats. Identities = 63/314 (20%), Positives = 101/314 (32%), Gaps = 31/314 (10%) Query 14 ALEGKNIIIWLPTGAGKT-------RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ-HGE 65 AL ++I+ TG+GKT + + DG V+VL L TQ E Sbjct 214 ALRNRDIVAVAKTGSGKTLGYLIPGFILLKRLQHNSR--DGPTVLVLSPTRELATQIQDE 271 Query 66 EFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF 125 + R + L G L R D+++ T L L E V L Sbjct 272 AKKFGRSSRISSVCLYGGAPKGPQLRDLERGADIVVATPGRLNDIL----EMRRVSLHQV 327 Query 126 SLIVVDECHH---THKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS-PGTGGASKLDGA 181 S +V+DE + I+ Q QP Q L TA+ P D Sbjct 328 SYLVLDEADRMLDMGFEPQIRKIVKQV--------QPKRQTLMFTATWPKEVRKIASDLL 379 Query 182 INHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIH 241 N V N D + + ++ + R + ++ ++ Sbjct 380 SNPVQVNIGNTDQLVANKSITQYVDVITP-PEKSRRLDQILRSQEPGSKIIIFCSTKRMC 438 Query 242 DHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV- 300 D L L+R++G + + L+ + R L L +R V Sbjct 439 DQL-ARNLARQYGASAIHGDKSQAERDSVLSEFRSGRCPILVATDVAARGLDIKDIRVVV 497 Query 301 --DALAALQDFYHR 312 D ++D+ HR Sbjct 498 NYDFPTGVEDYVHR 511 >sp|P38719|DBP8_YEAST ATP-dependent RNA helicase DBP8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DBP8 PE=1 SV=1 Length=431 Score = 128 bits (321), Expect = 2e-30, Method: Composition-based stats. Identities = 47/215 (22%), Positives = 90/215 (42%), Gaps = 26/215 (12%) Query 346 PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 PE+ K L ++L + + + IIF +A L L+Q + Sbjct 235 PEHVKEAYLYQLLTCEEYENKT--AIIFVNRTMTAEILRRTLKQLE-------------- 278 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465 +S + M Q+++ + +F+ +L+AT VA GLDIP +VV Y + ++ Sbjct 279 VRVASLHSQMPQQERTNSLHRFRANAARILIATDVASRGLDIPTVELVVNYDIPSDPDVF 338 Query 466 VQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM-DQAEYQAKIR 523 + GR ARA + A R++ R +A+E + + + K+ D A + + Sbjct 339 IHRSGRTARAGRIGDAISFVTQ-RDVSRI---QAIEDRINKKMTETNKVHDTAVIRKALT 394 Query 524 DLQQAALTKRAAQA----AQRENQRQQFPVEHVQL 554 + +A A +R+ Q+++ + L Sbjct 395 KVTKAKRESLMAMQKENFGERKRQQKKKQNDGKSL 429 Score = 46.3 bits (108), Expect = 7e-04, Method: Composition-based stats. Identities = 31/137 (23%), Positives = 50/137 (36%), Gaps = 13/137 (9%) Query 7 QWEVIMPA-----LEGKNIIIWLPTGAGKTRAAAY--VAKRHLETVDGAKVVVLVNRVHL 59 Q I A LEG++ I TG+GKT A + + E G VVL L Sbjct 24 QPTAIQKACIPKILEGRDCIGGAKTGSGKT-IAFAGPMLTKWSEDPSGMFGVVLTPTREL 82 Query 60 VTQ---HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE 116 Q ++ R +V + G+ + + H ++ T L + S + Sbjct 83 AMQIAEQFTALGSSMNIRVSVI-VGGESIVQQALDLQRKPHFII-ATPGRLAHHIMSSGD 140 Query 117 EEHVELTVFSLIVVDEC 133 + L +V+DE Sbjct 141 DTVGGLMRAKYLVLDEA 157 >sp|A6ZT77|DBP8_YEAS7 ATP-dependent RNA helicase DBP8 OS=Saccharomyces cerevisiae (strain YJM789) OX=307796 GN=DBP8 PE=3 SV=1 Length=431 Score = 128 bits (321), Expect = 2e-30, Method: Composition-based stats. Identities = 47/215 (22%), Positives = 90/215 (42%), Gaps = 26/215 (12%) Query 346 PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 PE+ K L ++L + + + IIF +A L L+Q + Sbjct 235 PEHVKEAYLYQLLTCEEYENKT--AIIFVNRTMTAEILRRTLKQLE-------------- 278 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465 +S + M Q+++ + +F+ +L+AT VA GLDIP +VV Y + ++ Sbjct 279 VRVASLHSQMPQQERTNSLHRFRANAARILIATDVASRGLDIPTVELVVNYDIPSDPDVF 338 Query 466 VQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM-DQAEYQAKIR 523 + GR ARA + A R++ R +A+E + + + K+ D A + + Sbjct 339 IHRSGRTARAGRIGDAISFVTQ-RDVSRI---QAIEDRINKKMTETNKVHDTAVIRKALT 394 Query 524 DLQQAALTKRAAQA----AQRENQRQQFPVEHVQL 554 + +A A +R+ Q+++ + L Sbjct 395 KVTKAKRESLMAMQKENFGERKRQQKKKQNDGKSL 429 Score = 46.3 bits (108), Expect = 7e-04, Method: Composition-based stats. Identities = 31/137 (23%), Positives = 50/137 (36%), Gaps = 13/137 (9%) Query 7 QWEVIMPA-----LEGKNIIIWLPTGAGKTRAAAY--VAKRHLETVDGAKVVVLVNRVHL 59 Q I A LEG++ I TG+GKT A + + E G VVL L Sbjct 24 QPTAIQKACIPKILEGRDCIGGAKTGSGKT-IAFAGPMLTKWSEDPSGMFGVVLTPTREL 82 Query 60 VTQ---HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE 116 Q ++ R +V + G+ + + H ++ T L + S + Sbjct 83 AMQIAEQFTALGSSMNIRVSVI-VGGESIVQQALDLQRKPHFII-ATPGRLAHHIMSSGD 140 Query 117 EEHVELTVFSLIVVDEC 133 + L +V+DE Sbjct 141 DTVGGLMRAKYLVLDEA 157 >sp|Q5W5U4|DDX4_BOVIN Probable ATP-dependent RNA helicase DDX4 OS=Bos taurus OX=9913 GN=DDX4 PE=2 SV=1 Length=729 Score = 131 bits (329), Expect = 2e-30, Method: Composition-based stats. Identities = 58/342 (17%), Positives = 114/342 (33%), Gaps = 65/342 (19%) Query 255 TQMYEQQVVKLSEAAALAGLQEQRVYALHL-RRYNDALLIHDTVRAVDALAALQDFYHRE 313 Q V + A G + + R L++ + R +D + ++ Sbjct 408 GHSIRQIVQGCNILCATPGRLMDVIGKEKIGLRQVKYLVLDEADRMLDMGFGPEM---KK 464 Query 314 HVTKTQILCAERRLLALFDDRKNE----------------------------LAHLATHG 345 ++ + E+R +F E + Sbjct 465 LISCPGMPSKEQRQTLMFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQTILQV 524 Query 346 PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 + K E L +IL+ R ++F T++ A + +L Q++ Sbjct 525 GQYSKREKLVEILRNI----GDERTMVFVETKKKADFIATFLCQEK-------------- 566 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465 +S QR++++ + F+ G +LVATSVA GLDI + V+ + L + Sbjct 567 ISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEY 626 Query 466 VQARGR-ARADQSVYA--FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKI 522 V GR R + A F E +L + L+ + L + A ++++ + Y Sbjct 627 VHRIGRTGRCGNTGRAISFFDLESDSQLAQPLV-KVLSDAQQDVPAWLEEIAFSTYGPGF 685 Query 523 R-----------DLQQAALTKRAAQAAQRENQRQQFPVEHVQ 553 D ++ K + A + + PV+ Sbjct 686 SGNARGNVFASVDTRKNYPGKSSLNTAGFSSTQAPNPVDDES 727 Score = 48.6 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 55/164 (34%), Gaps = 16/164 (10%) Query 17 GKNIIIWLPTGAGKTRAAAYVAKRH----------LETVDGAKVVVLVNRVHLVTQHGEE 66 G++++ TG+GKT A H + + + +++ L+ Q E Sbjct 327 GRDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLE 386 Query 67 FRRM-LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF 125 R+ + G + + ++L T L + + + L Sbjct 387 ARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDVIGKEK----IGLRQV 442 Query 126 SLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS 169 +V+DE D + M + + ++ Q L +A+ Sbjct 443 KYLVLDEADR-MLDMGFGPEMKKLISCPGMPSKEQRQTLMFSAT 485 >sp|Q2HAD8|PRP5_CHAGB Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=PRP5 PE=3 SV=1 Length=1064 Score = 132 bits (331), Expect = 2e-30, Method: Composition-based stats. Identities = 61/335 (18%), Positives = 112/335 (33%), Gaps = 47/335 (14%) Query 214 PCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAAAL 271 P + P +L ++ + + +L +G + Q+ +L A + Sbjct 496 PVTGDDGAIALIMTPTRELCTQIYSDLLPFAKALKLRAIAAYGGNAIKDQIAELKRGAEI 555 Query 272 AGLQEQRVYAL---------HLRRYNDALLIHDTVRAVD--------------------A 302 R+ L +L+R L++ + R D Sbjct 556 IVATPGRMIDLLAANSGRVTNLKR-ATYLVLDEADRMFDMGFEPQVMKIFNNVRPDRQTI 614 Query 303 LAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQF 362 L + + +TK + + E+ + E K L ++L + Sbjct 615 LFSATMPRIIDALTKKVLREPVEIQVGGRSVVAPEITQIVEILDEGKKFVRLLELLGELY 674 Query 363 SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE 422 + + R +IF ++ A LL + ++ G G S Q D+ Sbjct 675 ADDDDVRALIFVERQEKADDLLREVLRR--------------GYGCMSIHGGKDQEDRNS 720 Query 423 VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF 481 I F+ G +++ATSVA GLD+ +VV Y + V GR RA + A Sbjct 721 TISDFKKGVCPIMIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAV 780 Query 482 VATEGSRELKRELINEALETLMEQAVAAVQKMDQA 516 +E I +ALE + + +M +A Sbjct 781 TFITEEQENCAPGIAKALEQSGQPVPEQLNEMRKA 815 Score = 65.6 bits (158), Expect = 1e-09, Method: Composition-based stats. Identities = 53/323 (16%), Positives = 105/323 (33%), Gaps = 29/323 (9%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLET------VDGAKVVVLVNRVHLV 60 Q + + + G+++I TG+GKT A RH++ DGA +++ L Sbjct 456 QMQALPVIMSGRDVIGVAKTGSGKTMAFVLPMLRHIKDQDPVTGDDGAIALIMTPTRELC 515 Query 61 TQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 TQ + + G + L R ++++ T + L + Sbjct 516 TQIYSDLLPFAKALKLRAIAAYGGNAIKDQIAELKRGAEIIVATPGRMIDLLAANSGR-V 574 Query 120 VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQ-----PLPQVL-GLTASPGTG 173 L + +V+DE +M + ++ R +P+++ LT Sbjct 575 TNLKRATYLVLDEADRMFDMGFEPQVMKIFNNVRPDRQTILFSATMPRIIDALTKKVLRE 634 Query 174 GASKLDGAIN----HVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPF 229 G + + Q+ LD L E L Q+ Sbjct 635 PVEIQVGGRSVVAPEITQIVEILDEGKKFVR--LLELLGELYADDDDVRALIFVERQEKA 692 Query 230 GDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND 289 DLL++++ + + + + Q + + + V A L Sbjct 693 DDLLREVLRRGYGCMSIHGGK----DQEDRNSTISDFKKGVCPIMIATSVAARGLDVKQL 748 Query 290 ALLIHDTVRAVDALAALQDFYHR 312 L+++ DA L+D+ HR Sbjct 749 KLVVN-----YDAPNHLEDYVHR 766 >sp|A1CR32|RRP3_ASPCL ATP-dependent rRNA helicase rrp3 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=rrp3 PE=3 SV=1 Length=473 Score = 128 bits (322), Expect = 2e-30, Method: Composition-based stats. Identities = 64/356 (18%), Positives = 130/356 (37%), Gaps = 48/356 (13%) Query 214 PCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAG 273 P ++ +S + G + I ++M S G + + ++ + L Sbjct 129 PTRELAFQISQSFEALGSTINVRCAVIVGGMDMVSQSIALGKKPH---IIVATPGRLLDH 185 Query 274 LQEQRVYALHLRRYNDALLIHDTVRAVD-ALAALQDFYHREHVTKTQILCAERRLLALFD 332 L+ + ++L +Y L++ + R +D L D + + + A Sbjct 186 LENTKGFSLRTLKY---LVMDEADRLLDMDFGPLLDKILKILPRERRTFL----FSATMS 238 Query 333 DRKNELAHLATHGPE-----NPKLEMLEKILQRQFSSSNSPR---------------GII 372 + L + P + K + + +LQ + + II Sbjct 239 SKVESLQRASLSNPLRVSVSSNKYQTVSTLLQSYRFIPHKHKDIYLVYLLNEFVGQSAII 298 Query 373 FTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTL 432 FTRT + L+ +G G ++Q + + KF+ + Sbjct 299 FTRTVHETQRISFLLRA--------------LGFGAIPLHGQLSQSSRLGALGKFRSRSR 344 Query 433 NLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELK 491 ++LVAT VA GLDIP +VV+ + L T+ + V GR ARA +S A Sbjct 345 DILVATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQYDVEI 404 Query 492 RELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQF 547 I AL +++ ++K + ++ + Q+ A+ + ++ + ++F Sbjct 405 WLRIEGALGKKLDEY--DLEKDEVMVLAERVGEAQRQAIMEMKNFDEKKGTRAKKF 458 Score = 61.4 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 65/426 (15%), Positives = 134/426 (31%), Gaps = 46/426 (11%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVV---LVNRVHLVTQH 63 Q E I AL+ +++I TG+GKT A A + L +D + L L Q Sbjct 80 QAESIPLALQDRDLIGLAETGSGKTAAFALPILQAL--MDKPQSFFGLVLAPTRELAFQI 137 Query 64 GEEFRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 + F + + G M + L + +++ T L L + + L Sbjct 138 SQSFEALGSTINVRCAVIVGGMDMVSQSIALGKKPHIIVATPGRLLDHLENTKG---FSL 194 Query 123 TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLP---QVLGLTASPGTGGASKLD 179 +V+DE ++ + L + + LP + +A+ + S Sbjct 195 RTLKYLVMDEADR--------LLDMDFGPLLDKILKILPRERRTFLFSATMSSKVESLQR 246 Query 180 GAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQ 239 ++++ L++ + + + +S + H + L + G Sbjct 247 ASLSNPLRVSVSSNKYQTVSTLLQSYRFIPHKHKDIYLVYL----LNEFVGQSAIIFTRT 302 Query 240 IHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRA 299 +H+ + L R G +LS+++ L L + R + + D + + Sbjct 303 VHETQRISFLLRALGFGA-IPLHGQLSQSSRLGALGKFRSRSRDILVATDVAARGLDIPS 361 Query 300 VDALAAL------QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEM 353 VD + + + HR T + + F + + L G KL+ Sbjct 362 VDVVLNFDLPTDSKTYVHRVGRTAR---AGKSGVAISFVTQYDVEIWLRIEGALGKKLDE 418 Query 354 LEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQST 413 ++ A + + + G G S+ Sbjct 419 ---------YDLEKDEVMVLAERVGEAQR--QAIMEMKNFDEKKGTRAKKFGKGKRSRD- 466 Query 414 HMTQRD 419 M Q + Sbjct 467 EMDQEE 472 >sp|Q0UN57|PRP5_PHANO Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) OX=321614 GN=PRP5 PE=3 SV=2 Length=1184 Score = 132 bits (331), Expect = 2e-30, Method: Composition-based stats. Identities = 68/366 (19%), Positives = 130/366 (36%), Gaps = 51/366 (14%) Query 212 QQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEAA 269 Q+P K + P +L ++++++ L ++ K +G Q Q+ + + Sbjct 609 QRPLKPADGPIGLILAPTRELSLQIVNELKPFLNASGITIKCAYGGQPISDQIA-MIKRG 667 Query 270 ALAGLQEQRVYALHLRRYND----------ALLIHDTVRAVD---------ALAALQDFY 310 + L + L + N +++ + R D LA+++ Sbjct 668 GIHILCATAGRLIDLLQSNSGRVLSFRRITYVVLDEADRMFDMGFEPQVMKILASIRPDR 727 Query 311 H-----------REHVTKTQILCAERRLLALFDDRKNELAHLATHGPEN--PKLEMLEKI 357 + + + ++ E+ T P + K+ L Sbjct 728 QTILFSATFPKTMAALARKALDKPAEVIIGGRSKVAPEITQHITIVPPSYEKKIAKLLHH 787 Query 358 LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ 417 L + FS + + +IFT +++A LL L + + I Q Sbjct 788 LGQTFSDDENAQVLIFTERQETAEDLLSKLFKAKYFAVNTIHGA-------------KDQ 834 Query 418 RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQ 476 D+ E I +F+ G LN+L+ATSVA GLD+P +V + T+ V GR RA Sbjct 835 TDRNEAINEFKQGLLNILIATSVAARGLDVPGLALVYNFDCPTHLEDYVHRCGRTGRAGN 894 Query 477 SVYAFVATEGSRELKREL-INEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAA 535 A E + + + I +AL+ + +Q M A + K++ + Sbjct 895 KGLAVTLIENPGQERFAVHIVKALKESGAEVPDDLQAMANA-FHEKVKSGTEKYYNVGFK 953 Query 536 QAAQRE 541 E Sbjct 954 GKGLDE 959 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 54/326 (17%), Positives = 95/326 (29%), Gaps = 31/326 (10%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKV-----VVLVNRVHLV 60 Q + I A G+++I TG+GKT A + + L+ ++L L Sbjct 571 QAQAIPIAESGRDLIGVAKTGSGKTLAFGIPMIRHVLDQRPLKPADGPIGLILAPTRELS 630 Query 61 TQHGEEFRRMLDGR--WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEE 118 Q E + L+ G +L TA L L S Sbjct 631 LQIVNELKPFLNASGITIKCAYGGQPISDQIAMIKRGGIHILCATAGRLIDLLQSNSGR- 689 Query 119 HVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQ-----PLPQVLGLTASPGTG 173 + + +V+DE +M ++ R P+ + A Sbjct 690 VLSFRRITYVVLDEADRMFDMGFEPQVMKILASIRPDRQTILFSATFPKTMAALA--RKA 747 Query 174 GASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQ-------PCKQYNLCHRRSQ 226 + I ++ + + P + ++ + L Q Sbjct 748 LDKPAEVIIGGRSKVAPEITQHITIVPPSYEKKIAKLLHHLGQTFSDDENAQVLIFTERQ 807 Query 227 DPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR 286 + DLL KL + + ++ Q + + + L L V A L Sbjct 808 ETAEDLLSKLFKAKYFAVNTIHGAK---DQTDRNEAINEFKQGLLNILIATSVAARGLDV 864 Query 287 YNDALLIHDTVRAVDALAALQDFYHR 312 AL V D L+D+ HR Sbjct 865 PGLAL-----VYNFDCPTHLEDYVHR 885 >sp|Q5B0J9|DBP2_EMENI ATP-dependent RNA helicase dbp2 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=dbp2 PE=3 SV=1 Length=563 Score = 129 bits (325), Expect = 2e-30, Method: Composition-based stats. Identities = 39/207 (19%), Positives = 80/207 (39%), Gaps = 19/207 (9%) Query 297 VRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEK 356 R +A R+ + + + ++ + + + E K + + K Sbjct 318 DRQTCMWSATWPKEVRQLASDFLNNYIQVNIGSMDLSANHRITQIVEVISEFEKRDRMIK 377 Query 357 ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT 416 L++ + + ++FT T++ A + +L+Q G S Sbjct 378 HLEKIME-NRGNKCLVFTGTKRIADEITRFLRQD--------------GWPALSIHGDKQ 422 Query 417 QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR---GRAR 473 Q+++ V+ +F+ G ++VAT VA G+D+ V+ Y N V GRA Sbjct 423 QQERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVINYDYPNNSEDYVHRIGRTGRAG 482 Query 474 ADQSVYAFVATEGSRELKRELINEALE 500 A + F T+ +++ R+L+ E Sbjct 483 AKGTAITFFTTDNAKQ-ARDLVTILSE 508 Score = 52.5 bits (124), Expect = 1e-05, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 49/129 (38%), Gaps = 11/129 (9%) Query 14 ALEGKNIIIWLPTGAGKTRA----AAYVA--KRHLETVDGAKVVVLVNRVHLVTQHGEEF 67 AL G++++ TG+GKT + A + L DG V++L L Q E Sbjct 174 ALSGRDVVGIAETGSGKTLSYCLPAIVHINAQPLLAPGDGPIVLILAPTRELAVQIQAEI 233 Query 68 RRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS 126 + R T + G + L+R ++ I T L L E L + Sbjct 234 SKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDML----EAGRTNLRRVT 289 Query 127 LIVVDECHH 135 +V+DE Sbjct 290 YLVLDEADR 298 >sp|A1DGZ7|DBP2_NEOFI ATP-dependent RNA helicase dbp2 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dbp2 PE=3 SV=1 Length=545 Score = 129 bits (325), Expect = 2e-30, Method: Composition-based stats. Identities = 41/207 (20%), Positives = 80/207 (39%), Gaps = 19/207 (9%) Query 297 VRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEK 356 R +A R+ T + + ++ + + + + K + + K Sbjct 297 DRQTCMWSATWPKEVRQLATDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIK 356 Query 357 ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT 416 L++ + + +IFT T++ A + +L+Q G S Sbjct 357 HLEKIME-NRGNKCLIFTGTKRIADEITRFLRQD--------------GWPALSIHGDKQ 401 Query 417 QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR---GRAR 473 Q+++ V+ +F+ G ++VAT VA G+D+ V+ Y N + GRA Sbjct 402 QQERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYIHRIGRTGRAG 461 Query 474 ADQSVYAFVATEGSRELKRELINEALE 500 A + F TE S++ R+L+ E Sbjct 462 AKGTAITFFTTENSKQ-ARDLVTILTE 487 Score = 53.3 bits (126), Expect = 6e-06, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 48/129 (37%), Gaps = 11/129 (9%) Query 14 ALEGKNIIIWLPTGAGKTRA----AAYVA--KRHLETVDGAKVVVLVNRVHLVTQHGEEF 67 AL G++++ TG+GKT A + L DG V++L L Q E Sbjct 153 ALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLILAPTRELAVQIQTEI 212 Query 68 RRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS 126 + R T + G + L+R ++ I T L L E L + Sbjct 213 SKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDML----EAGRTNLRRVT 268 Query 127 LIVVDECHH 135 +V+DE Sbjct 269 YLVLDEADR 277 >sp|Q5JKF2|RH40_ORYSJ DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0549400 PE=2 SV=2 Length=792 Score = 131 bits (329), Expect = 2e-30, Method: Composition-based stats. Identities = 41/144 (28%), Positives = 62/144 (43%), Gaps = 21/144 (15%) Query 348 NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG 407 + KL LE+IL+ Q + + +IF T++ L L +Q G Sbjct 379 SEKLRRLEQILRSQ---DSGSKVLIFCTTKRMCDQLARTLTRQ---------------FG 420 Query 408 NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 S+ +Q ++++V+ F+ G +LVAT VA GLDI VV+ Y T V Sbjct 421 ASAIHGDKSQSEREKVLSHFRSGRSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVH 480 Query 468 AR---GRARADQSVYAFVATEGSR 488 GRA A Y F + S+ Sbjct 481 RIGRTGRAGATGVAYTFFCDQDSK 504 Score = 62.9 bits (151), Expect = 7e-09, Method: Composition-based stats. Identities = 62/314 (20%), Positives = 105/314 (33%), Gaps = 31/314 (10%) Query 14 ALEGKNIIIWLPTGAGKT-------RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEE 66 AL+ ++++ TG+GKT + + + V+VL L TQ EE Sbjct 184 ALQCQDVVAIAKTGSGKTLGYLLPGFMHIKRLQNNPRSGPT--VLVLAPTRELATQILEE 241 Query 67 FRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF 125 + R + T L G L R D+++ T L L E + L Sbjct 242 AVKFGRSSRISSTCLYGGAPKGPQLRDLDRGVDVVVATPGRLNDIL----EMRRISLKQV 297 Query 126 SLIVVDECHH---THKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS-PGTGGASKLDGA 181 S +V+DE + I+ + P Q L TA+ P D Sbjct 298 SYLVLDEADRMLDMGFEPQIRKIVKEI--------PPRRQTLMYTATWPKEVRRIAEDLL 349 Query 182 INHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIH 241 ++ V ++D S +L S++ ++ R L+ ++ Sbjct 350 VHPVQVTIGSVDELVANSAITQNVELITPSEK-LRRLEQILRSQDSGSKVLIFCTTKRMC 408 Query 242 DHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV- 300 D L L+R+FG + L+ + R L L +R V Sbjct 409 DQLART-LTRQFGASAIHGDKSQSEREKVLSHFRSGRSPILVATDVAARGLDIKDIRVVI 467 Query 301 --DALAALQDFYHR 312 D ++D+ HR Sbjct 468 NYDFPTGIEDYVHR 481 >sp|Q7RY59|RRP3_NEUCR ATP-dependent rRNA helicase rrp-3 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=rrp-3 PE=3 SV=1 Length=515 Score = 129 bits (323), Expect = 2e-30, Method: Composition-based stats. Identities = 44/177 (25%), Positives = 77/177 (44%), Gaps = 20/177 (11%) Query 370 GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD 429 IIFTRT + + L+ +G G ++Q + + KF+ Sbjct 333 IIIFTRTVLETQRIAILLRT--------------LGMGAIPLHGGLSQSARLGALNKFRA 378 Query 430 GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSR 488 G+ +LVAT VA GLDIP+ + V+ + L + + V GR ARA +S +A Sbjct 379 GSREILVATDVAARGLDIPNVDCVINHDLPQDSKTYVHRVGRTARAGKSGHAISIVTQYD 438 Query 489 ELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQ 545 I AL +++ ++K + ++ ++ + Q+ A R + ENQ + Sbjct 439 LEIWLRIEAALGHKLDEYP--LEKDEVMVFKPRVEEAQRHA---RNEMKSLMENQGK 490 Score = 65.6 bits (158), Expect = 7e-10, Method: Composition-based stats. Identities = 46/280 (16%), Positives = 94/280 (34%), Gaps = 15/280 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q + I AL+ ++II TG+GKT A A + + L+ +VL L Q + Sbjct 117 QEQSIPLALQNRDIIGIAETGSGKTAAFALPILQALLDKPAPLFALVLAPTRELAAQIAQ 176 Query 66 EFRRMLDGRW-TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 F + + G M L + +++ T L L + L Sbjct 177 AFEALGSLISLRCALILGGMDMVTQAIALGKKPHVIVATPGRLLDHLEKTKG---FSLRS 233 Query 125 FSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINH 184 +V+DE D + I+ + L+ + + +A+ + S ++ Sbjct 234 MQYLVMDEADRLL-DMDFGPILEKILKFLPRER----RTFLFSATMSSKVESLQRASLRD 288 Query 185 VLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHL 244 L++ + + + +S H + LC + F + + Sbjct 289 PLKVSVSSNKYATVSTLKSNYVFIPHMHKDTYLVYLC-----NEFAGQTIIIFTRTVLET 343 Query 245 EMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHL 284 + + + LS++A L L + R + + Sbjct 344 QRIAILLRTLGMGAIPLHGGLSQSARLGALNKFRAGSREI 383 >sp|A5DLE0|DBP8_PICGU ATP-dependent RNA helicase DBP8 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DBP8 PE=3 SV=2 Length=433 Score = 127 bits (320), Expect = 2e-30, Method: Composition-based stats. Identities = 44/216 (20%), Positives = 88/216 (41%), Gaps = 31/216 (14%) Query 346 PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 P K L IL I+F +A L L++ +DIR L Sbjct 234 PSYVKEAYLHNILVS--PKYEKASAIVFVNRTYTAEILRRTLRK------LDIRVASL-- 283 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465 + M Q ++ + +F+ G +L+AT VA GLDIP+ +VV + + Sbjct 284 ------HSEMPQSERTNSLHRFRAGAARVLIATDVASRGLDIPNVELVVNQDIPADPDDY 337 Query 466 VQARGR-ARADQSVYA-----------FVATEGSRELKRELINEAL-ETLMEQAVAAVQK 512 + GR ARA + + +A E K +L+ E + +++++++ V Sbjct 338 IHRVGRTARAGKKGGSVSIVSEKDVERILAIENHINKKMDLLEEVNDDKIIKESLSIVTA 397 Query 513 MDQAEYQAKIRD--LQQAALTKRAAQAAQRENQRQQ 546 + ++ ++ + KR + R++++++ Sbjct 398 AKRESVADMEKEGFGEKRKINKRKREERTRDSKKRK 433 Score = 57.5 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 63/402 (16%), Positives = 120/402 (30%), Gaps = 44/402 (11%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQ--- 62 Q E I L G++ I TG+GKT A AA + + E G +VL L Q Sbjct 28 QAECIPQILAGRDCIGGAKTGSGKTIAFAAPMMTKWSEDPFGIYGLVLTPTRELALQIAE 87 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 ++ + V DM +A + + +I T L + + ++ L Sbjct 88 QFLALGASMNIKVAVVVGGEDMVKQAL--EIQKSPHFIIATPGRLADHILNSGDDTVGGL 145 Query 123 TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS-----------PG 171 +V+DE ++ + + + L + Q L TA+ P Sbjct 146 KRIKFLVLDEADRLLSNSFGSDLERCFKILPDASKR---QTLLFTATVTDAVRALKDKPV 202 Query 172 TGGASKL---DGAINHVLQLCANLDTWCIMSPQNCCPQLQEHS-----QQPCKQYNLCHR 223 G + + + + A L + P + + +R Sbjct 203 PEGKKPVFIHEIVSKDQVAIPATLTISYVFVPSYVKEAYLHNILVSPKYEKASAIVFVNR 262 Query 224 RSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALH 283 + +D L + ++ A A L V + Sbjct 263 TYTAEILRRTLRKLDIRVASLHSEMPQSERTNSLHR------FRAGAARVLIATDVASRG 316 Query 284 LRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLAT 343 L N L+++ + A D Y + + + + + LA Sbjct 317 LDIPNVELVVNQDI------PADPDDYIHRVGRTARAGKKGGSVSIVSEKDVERI--LAI 368 Query 344 HGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLL 385 N K+++LE++ I+ R+S + Sbjct 369 ENHINKKMDLLEEV--NDDKIIKESLSIVTAAKRESVADMEK 408 >sp|A5E1W4|DBP3_LODEL ATP-dependent RNA helicase DBP3 OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) OX=379508 GN=DBP3 PE=3 SV=2 Length=535 Score = 129 bits (324), Expect = 2e-30, Method: Composition-based stats. Identities = 63/352 (18%), Positives = 122/352 (35%), Gaps = 64/352 (18%) Query 227 DPFGDLLKKLMDQIHDHLEMPELS--RKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHL 284 P +L ++ D + D ++S +G + Q+ K+ A + R+ L Sbjct 202 SPTRELALQIYDNLEDLTRGTDVSCVAIYGGVSKDDQIKKIRNGANVVVATPGRLVDLIN 261 Query 285 RRYND-----ALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELA 339 D L++ + R ++ + F + R+ L E+ Sbjct 262 DGAVDLSSINYLVLDEADRMLE-----KGFEEDIKLIIGSTPAQGRQTLMFTATWPKEVR 316 Query 340 HLATH-----------------------------GPENPKLEMLEKILQRQFSSSN-SPR 369 LA + + K + L +LQ+ ++ N + Sbjct 317 ELANNFMNQPVKVTIGDRDELSANKRITQIVEVLDDKFQKEKKLINLLQKYQNTGNGDNK 376 Query 370 GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD 429 ++F ++ A + L + + + + G ++Q+ + + +Q F+ Sbjct 377 ILVFALYKKEASRIESLLHRNK------FKVAAIHG--------DLSQQQRTQALQSFKS 422 Query 430 GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGS 487 G NLL+AT VA GLDIP+ V+ V GR RA Q+ A TE Sbjct 423 GECNLLLATDVAARGLDIPNVKYVINLTFPLTIEDYVHRLGRTGRAGQTGIAHTFFTEDE 482 Query 488 RELKREL------INEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKR 533 + L L N+ + + + +K + Y A +D+ +K Sbjct 483 KHLSGALCNILRGANQPVPEALLKYGGHTKKKTHSVYGAFYKDVDMPIDSKE 534 Score = 54.8 bits (130), Expect = 2e-06, Method: Composition-based stats. Identities = 21/124 (17%), Positives = 47/124 (38%), Gaps = 7/124 (6%) Query 15 LEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVV-LVNRVHLVTQHGEEFRRMLD 72 L+GK+++ TG+GKT A + + + V+ + L Q + + Sbjct 161 LDGKDVVGVAETGSGKTFAFGVPAINNIITSKNKDLSVLCISPTRELALQIYDNLEDLTR 220 Query 73 G-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVD 131 G + + G + + ++++ T L + V+L+ + +V+D Sbjct 221 GTDVSCVAIYGGVSKDDQIKKIRNGANVVVATPGRLVDLIND----GAVDLSSINYLVLD 276 Query 132 ECHH 135 E Sbjct 277 EADR 280 >sp|Q61496|DDX4_MOUSE ATP-dependent RNA helicase DDX4 OS=Mus musculus OX=10090 GN=Ddx4 PE=1 SV=2 Length=702 Score = 130 bits (327), Expect = 2e-30, Method: Composition-based stats. Identities = 53/296 (18%), Positives = 103/296 (35%), Gaps = 54/296 (18%) Query 255 TQMYEQQVVKLSEAAALAGLQEQRVYALHL-RRYNDALLIHDTVRAVDALAALQDFYHRE 313 Q V + A G + + + L++ + R +D + ++ Sbjct 379 GHSVRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGFGPEM---KK 435 Query 314 HVTKTQILCAERRLLALFDDRKNE----------------------------LAHLATHG 345 ++ + E+R LF E + Sbjct 436 LISCPGMPSKEQRQTLLFSATFPEEIQRLAGDFLKSSYLFVAVGQVGGACRDVQQTILQV 495 Query 346 PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 + K E L +IL+ R ++F T++ A + +L Q++ Sbjct 496 GQYSKREKLVEILRNI----GDERTMVFVETKKKADFIATFLCQEK-------------- 537 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465 +S QR++++ + F+ G +LVATSVA GLDI + V+ + L + Sbjct 538 ISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEY 597 Query 466 VQARGR-ARADQSVYA--FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEY 518 V GR R + A F T+ L + L+ + L + A ++++ + Y Sbjct 598 VHRIGRTGRCGNTGRAISFFDTDSDNHLAQPLV-KVLSDAQQDVPAWLEEIAFSTY 652 Score = 49.0 bits (115), Expect = 1e-04, Method: Composition-based stats. Identities = 26/166 (16%), Positives = 56/166 (34%), Gaps = 16/166 (10%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRH----------LETVDGAKVVVLVNRVHLVTQHG 64 L G++++ TG+GKT A H + + + +++ L+ Q Sbjct 296 LAGRDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIY 355 Query 65 EEFRRM-LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELT 123 E R+ + G + + ++L T L + + + L Sbjct 356 LEARKFSFGTCVRAVVIYGGTQFGHSVRQIVQGCNILCATPGRLMDIIGKEK----IGLK 411 Query 124 VFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS 169 +V+DE D + M + + ++ Q L +A+ Sbjct 412 QVKYLVLDEADR-MLDMGFGPEMKKLISCPGMPSKEQRQTLLFSAT 456 >sp|Q0DM51|RH3_ORYSJ DEAD-box ATP-dependent RNA helicase 3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0827700 PE=2 SV=2 Length=758 Score = 131 bits (328), Expect = 2e-30, Method: Composition-based stats. Identities = 43/211 (20%), Positives = 83/211 (39%), Gaps = 35/211 (17%) Query 329 ALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQ 388 + + A K +L ++ + + I+FT+T++ A + L L Sbjct 316 DQDEKLAEGIKLYAIPLTSTSKRTVLSDLITVY---AKGGKTIVFTKTKRDADEVSLALT 372 Query 389 QQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIP 448 + + ++Q ++ + F+ G +LVAT VA GLDIP Sbjct 373 NS---------------IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP 417 Query 449 HCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGS-----RELKREL-------- 494 + ++++ Y L + + V GR RA ++ A + S R L+R++ Sbjct 418 NVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTNSQRRTVRSLERDVGCRFDFIS 477 Query 495 ---INEALETLMEQAVAAVQKMDQAEYQAKI 522 I + LE+ E +A ++ + Q I Sbjct 478 PPAIEDVLESSAEHVIATLRGVHTESIQYFI 508 Score = 61.0 bits (146), Expect = 3e-08, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 58/136 (43%), Gaps = 14/136 (10%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGA--------KVVVLVNRV 57 Q V++PAL+G+++I TG GKT A + K+ +E DG +V+VL Sbjct 131 QRAVLIPALDGRDLIARAKTGTGKTLAFGIPMIKQLMEEDDGRSVRRGRIPRVLVLAPTR 190 Query 58 HLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE 117 L Q +E + TV G + L+R D+++ T + + Sbjct 191 ELAKQVEKEIKESAPKLSTVCVYGG-VSYNVQQNALSRGVDVVVGTPGRIIDLING---- 245 Query 118 EHVELTVFSLIVVDEC 133 ++L +V+DE Sbjct 246 GSLQLGEVKYLVLDEA 261 >sp|Q9C551|RH5_ARATH DEAD-box ATP-dependent RNA helicase 5 OS=Arabidopsis thaliana OX=3702 GN=RH5 PE=1 SV=1 Length=537 Score = 129 bits (324), Expect = 3e-30, Method: Composition-based stats. Identities = 63/334 (19%), Positives = 116/334 (35%), Gaps = 26/334 (8%) Query 171 GTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFG 230 K+ G V C L + + +PC ++C Sbjct 176 VLKKNKKIGGGSKKVNPTC--LVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSK-- 231 Query 231 DLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDA 290 + I +++ + + E V++LS+ + + + R+ + Sbjct 232 ---GPQISAIRSGVDIVIGTPGRLRDLIESNVLRLSDVSFVVLDEADRMLDMGFEEPVRF 288 Query 291 LLIHDT-VRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNE-LAHLATHGPEN 348 +L + VR + +A + + + ++ D N + + E Sbjct 289 ILSNTNKVRQMVMFSATWPLDVHKLAQEFMDPNPIKVIIGSVDLAANHDVMQIIEVLDER 348 Query 349 PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN 408 + + L +L ++ S R ++F + A L +LQQ+ G Sbjct 349 ARDQRLIALL-EKYHKSQKNRVLVFALYKVEAERLERFLQQR--------------GWKA 393 Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 S + Q ++ + F++G+ LLVAT VA GLDIP VV+ Y V Sbjct 394 VSIHGNKAQSERTRSLSLFKEGSCPLLVATDVAARGLDIPDVEVVINYTFPLTTEDYVHR 453 Query 469 RGR-ARADQSVYAF-VATEGSRELKRELINEALE 500 GR RA + A T ++ L EL+N E Sbjct 454 IGRTGRAGKKGVAHTFFTPLNKGLAGELVNVLRE 487 Score = 47.5 bits (111), Expect = 3e-04, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 47/132 (36%), Gaps = 15/132 (11%) Query 15 LEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDG-----AKV----VVLVNRVHLVTQHG 64 L+G+++I TG+GKT A L+ KV +VL L Q Sbjct 149 LDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQIS 208 Query 65 EEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELT 123 + R + + G + D++I T L+ + S + L+ Sbjct 209 DVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTPGRLRDLIESNV----LRLS 264 Query 124 VFSLIVVDECHH 135 S +V+DE Sbjct 265 DVSFVVLDEADR 276 >sp|Q5R4I9|DDX5_PONAB Probable ATP-dependent RNA helicase DDX5 OS=Pongo abelii OX=9601 GN=DDX5 PE=2 SV=1 Length=614 Score = 130 bits (326), Expect = 3e-30, Method: Composition-based stats. Identities = 50/318 (16%), Positives = 106/318 (33%), Gaps = 45/318 (14%) Query 228 PFGDLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEAAALAGLQEQRV-----Y 280 P +L +++ ++ L +G Q+ L + R+ Sbjct 175 PTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEC 234 Query 281 ALHLRRYNDALLIHDTVRAVD-----ALAALQDFYHREHVTKTQILCAERRLLALFDDRK 335 R L++ + R +D + + D + T + + L +D Sbjct 235 GKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFL 294 Query 336 NELAHLAT----------------HGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQS 379 + H+ + K E L + L + S + I+F T++ Sbjct 295 KDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIR-LMEEIMSEKENKTIVFVETKRR 353 Query 380 AHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATS 439 L +++ G +Q+++ V+ +F+ G +L+AT Sbjct 354 CDELTRKMRRD--------------GWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATD 399 Query 440 VAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINE 497 VA GLD+ V+ Y + + GR AR+ ++ A+ T + + +LI+ Sbjct 400 VASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISV 459 Query 498 ALETLMEQAVAAVQKMDQ 515 E +Q ++ Sbjct 460 LREANQAINPKLLQLVED 477 Score = 46.3 bits (108), Expect = 8e-04, Method: Composition-based stats. Identities = 58/360 (16%), Positives = 111/360 (31%), Gaps = 38/360 (11%) Query 14 ALEGKNIIIWLPTGAGKTRA----AAYVAKR--HLETVDGAKVVVLVNRVHLVTQ-HGEE 66 AL G +++ TG+GKT + A LE DG +VL L Q Sbjct 128 ALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVA 187 Query 67 FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS 126 R T + G L R ++ I T L L E L + Sbjct 188 AEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFL----ECGKTNLRRTT 243 Query 127 LIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVL 186 +V+DE + ++ E ++++ + P V Sbjct 244 YLVLDEA---------DRMLDMGFEPQIRKIVDQIR-------PDRQTLMWSATWPKEVR 287 Query 187 QLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEM 246 QL + + +L + + ++CH +D + L +LM++I E Sbjct 288 QLAEDF-LKDYIHINIGALELSANHNI-LQIVDVCHDVEKD---EKLIRLMEEIMSEKEN 342 Query 247 PELSRKFGTQMYEQQVVKLSEAAAL------AGLQEQRVYALHLRRYNDALLIHDTVRAV 300 + + ++ K+ Q++R + L+ ++ A ++ T A Sbjct 343 KTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVAS 402 Query 301 DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQR 360 L + + R+ K A+ ++ L +L+ Sbjct 403 RGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLRE 462 >sp|Q61656|DDX5_MOUSE Probable ATP-dependent RNA helicase DDX5 OS=Mus musculus OX=10090 GN=Ddx5 PE=1 SV=2 Length=614 Score = 130 bits (326), Expect = 3e-30, Method: Composition-based stats. Identities = 50/318 (16%), Positives = 106/318 (33%), Gaps = 45/318 (14%) Query 228 PFGDLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEAAALAGLQEQRV-----Y 280 P +L +++ ++ L +G Q+ L + R+ Sbjct 175 PTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEC 234 Query 281 ALHLRRYNDALLIHDTVRAVD-----ALAALQDFYHREHVTKTQILCAERRLLALFDDRK 335 R L++ + R +D + + D + T + + L +D Sbjct 235 GKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFL 294 Query 336 NELAHLAT----------------HGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQS 379 + H+ + K E L + L + S + I+F T++ Sbjct 295 KDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIR-LMEEIMSEKENKTIVFVETKRR 353 Query 380 AHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATS 439 L +++ G +Q+++ V+ +F+ G +L+AT Sbjct 354 CDELTRKMRRD--------------GWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATD 399 Query 440 VAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINE 497 VA GLD+ V+ Y + + GR AR+ ++ A+ T + + +LI+ Sbjct 400 VASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISV 459 Query 498 ALETLMEQAVAAVQKMDQ 515 E +Q ++ Sbjct 460 LREANQAINPKLLQLVED 477 Score = 46.3 bits (108), Expect = 8e-04, Method: Composition-based stats. Identities = 58/360 (16%), Positives = 111/360 (31%), Gaps = 38/360 (11%) Query 14 ALEGKNIIIWLPTGAGKTRA----AAYVAKR--HLETVDGAKVVVLVNRVHLVTQ-HGEE 66 AL G +++ TG+GKT + A LE DG +VL L Q Sbjct 128 ALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVA 187 Query 67 FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS 126 R T + G L R ++ I T L L E L + Sbjct 188 AEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFL----ECGKTNLRRTT 243 Query 127 LIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVL 186 +V+DE + ++ E ++++ + P V Sbjct 244 YLVLDEA---------DRMLDMGFEPQIRKIVDQIR-------PDRQTLMWSATWPKEVR 287 Query 187 QLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEM 246 QL + + +L + + ++CH +D + L +LM++I E Sbjct 288 QLAEDF-LKDYIHINIGALELSANHNI-LQIVDVCHDVEKD---EKLIRLMEEIMSEKEN 342 Query 247 PELSRKFGTQMYEQQVVKLSEAAAL------AGLQEQRVYALHLRRYNDALLIHDTVRAV 300 + + ++ K+ Q++R + L+ ++ A ++ T A Sbjct 343 KTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVAS 402 Query 301 DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQR 360 L + + R+ K A+ ++ L +L+ Sbjct 403 RGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLRE 462 >sp|P17844|DDX5_HUMAN Probable ATP-dependent RNA helicase DDX5 OS=Homo sapiens OX=9606 GN=DDX5 PE=1 SV=1 Length=614 Score = 130 bits (326), Expect = 3e-30, Method: Composition-based stats. Identities = 50/318 (16%), Positives = 106/318 (33%), Gaps = 45/318 (14%) Query 228 PFGDLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEAAALAGLQEQRV-----Y 280 P +L +++ ++ L +G Q+ L + R+ Sbjct 175 PTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEC 234 Query 281 ALHLRRYNDALLIHDTVRAVD-----ALAALQDFYHREHVTKTQILCAERRLLALFDDRK 335 R L++ + R +D + + D + T + + L +D Sbjct 235 GKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFL 294 Query 336 NELAHLAT----------------HGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQS 379 + H+ + K E L + L + S + I+F T++ Sbjct 295 KDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIR-LMEEIMSEKENKTIVFVETKRR 353 Query 380 AHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATS 439 L +++ G +Q+++ V+ +F+ G +L+AT Sbjct 354 CDELTRKMRRD--------------GWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATD 399 Query 440 VAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINE 497 VA GLD+ V+ Y + + GR AR+ ++ A+ T + + +LI+ Sbjct 400 VASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISV 459 Query 498 ALETLMEQAVAAVQKMDQ 515 E +Q ++ Sbjct 460 LREANQAINPKLLQLVED 477 Score = 46.3 bits (108), Expect = 8e-04, Method: Composition-based stats. Identities = 58/360 (16%), Positives = 111/360 (31%), Gaps = 38/360 (11%) Query 14 ALEGKNIIIWLPTGAGKTRA----AAYVAKR--HLETVDGAKVVVLVNRVHLVTQ-HGEE 66 AL G +++ TG+GKT + A LE DG +VL L Q Sbjct 128 ALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVA 187 Query 67 FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS 126 R T + G L R ++ I T L L E L + Sbjct 188 AEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFL----ECGKTNLRRTT 243 Query 127 LIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVL 186 +V+DE + ++ E ++++ + P V Sbjct 244 YLVLDEA---------DRMLDMGFEPQIRKIVDQIR-------PDRQTLMWSATWPKEVR 287 Query 187 QLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEM 246 QL + + +L + + ++CH +D + L +LM++I E Sbjct 288 QLAEDF-LKDYIHINIGALELSANHNI-LQIVDVCHDVEKD---EKLIRLMEEIMSEKEN 342 Query 247 PELSRKFGTQMYEQQVVKLSEAAAL------AGLQEQRVYALHLRRYNDALLIHDTVRAV 300 + + ++ K+ Q++R + L+ ++ A ++ T A Sbjct 343 KTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVAS 402 Query 301 DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQR 360 L + + R+ K A+ ++ L +L+ Sbjct 403 RGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLRE 462 >sp|Q4PFD9|PRP5_USTMA Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Ustilago maydis (strain 521 / FGSC 9021) OX=237631 GN=PRP5 PE=3 SV=1 Length=1156 Score = 131 bits (329), Expect = 3e-30, Method: Composition-based stats. Identities = 58/343 (17%), Positives = 110/343 (32%), Gaps = 47/343 (14%) Query 212 QQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEAA 269 Q+P + P +L ++ ++ ++ L +G +Q+ ++ + A Sbjct 541 QRPVEPSEGPVGIIMTPTRELAVQIYREMRPFIKALGLRAACVYGGAPISEQIAEMKKTA 600 Query 270 ALAGLQEQRVYAL--------HLRRYNDALLIHDTVRAVD-------------------- 301 + R+ L L++ + R D Sbjct 601 DIVVATPGRLIDLLTANSGRVTNLYRVTYLVLDEADRMFDMGFEPQVMKILNNIRPDRQT 660 Query 302 -ALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQR 360 +A K + E+ + E+ K L +IL Sbjct 661 VLFSATFPKQMESLARKVLKNKPLEITVGGRSVVAAEIEQIVEVRSEDTKFHRLLEILGE 720 Query 361 QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ 420 ++ R +IF +++A LL L ++ G S Q D+ Sbjct 721 LYNREKDARTLIFVDRQEAADDLLKDLIRK--------------GYVTMSLHGGKDQVDR 766 Query 421 QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVY 479 E I F+ G + ++ ATSVA GLD+ +V+ Y + + V GR RA Q Sbjct 767 DETISDFKAGNVPIVTATSVAARGLDVKQLKLVINYDVPNHMEDYVHRAGRTGRAGQKGT 826 Query 480 AFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKI 522 ++ I AL+ ++ M A ++ K+ Sbjct 827 CITFITPEQDRYARDIIAALKASAAHVPPELEAM-AASFKEKL 868 Score = 54.0 bits (128), Expect = 4e-06, Method: Composition-based stats. Identities = 51/325 (16%), Positives = 105/325 (32%), Gaps = 32/325 (10%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKV------VVLVNRVHLV 60 Q + + + G++II TG+GKT A RH++ + +++ L Sbjct 503 QSQAMPAIMSGRDIIGVAKTGSGKTMAFLLPMFRHIKDQRPVEPSEGPVGIIMTPTRELA 562 Query 61 TQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 Q E R + + G + + D+++ T L LT+ Sbjct 563 VQIYREMRPFIKALGLRAACVYGGAPISEQIAEMKKTADIVVATPGRLIDLLTANSGR-V 621 Query 120 VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS-P-------- 170 L + +V+DE +M ++ R L +A+ P Sbjct 622 TNLYRVTYLVLDEADRMFDMGFEPQVMKILNNIRPDRQTVL-----FSATFPKQMESLAR 676 Query 171 GTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFG 230 L+ + + A + I+ ++ + + + YN F Sbjct 677 KVLKNKPLEITVGGRSVVAA--EIEQIVEVRSEDTKFHRLLEILGELYNREKDARTLIFV 734 Query 231 DLLKKLMDQIHDHLEMPELSRKF---GTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRY 287 D + D + D + ++ Q+ + + +A + + V A L Sbjct 735 DRQEAADDLLKDLIRKGYVTMSLHGGKDQVDRDETISDFKAGNVPIVTATSVAARGLDVK 794 Query 288 NDALLIHDTVRAVDALAALQDFYHR 312 L+I+ D ++D+ HR Sbjct 795 QLKLVIN-----YDVPNHMEDYVHR 814 >sp|Q4IP34|PRP5_GIBZE Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=PRP5 PE=3 SV=3 Length=1191 Score = 131 bits (329), Expect = 3e-30, Method: Composition-based stats. Identities = 62/339 (18%), Positives = 111/339 (33%), Gaps = 47/339 (14%) Query 214 PCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAAAL 271 P K + P +L ++ L+M L +G +Q+ +L A + Sbjct 628 PLKDTDGPIGLIMTPTRELAVQIHKDCKPFLKMMGLRAVCAYGGAPIREQIAELKRGAEI 687 Query 272 AGLQEQRVYAL---------HLRRYNDALLIHDTVRAVD--------------------A 302 R+ L +L+R +++ + R D Sbjct 688 IVCTPGRMIDLLAANQGRVTNLKR-VTYVVLDEADRMFDMGFEPQVMKIFANMRPDRQTI 746 Query 303 LAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQF 362 L + + +TK + + E+ + E K + ++L + Sbjct 747 LFSATMPRIIDSLTKKVLKNPIEVTVGGRSVVAKEIEQIVEVRDEPSKFHRVLELLGELY 806 Query 363 SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE 422 R +IF ++ A LL L + G S Q D+ Sbjct 807 DRDEDARTLIFVERQEKADDLLKELM--------------MKGYPCMSIHGGKDQIDRDS 852 Query 423 VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF 481 I F+ G + +L+ATSVA GLD+ +V+ Y + V GR RA + A Sbjct 853 TISDFKKGVVPILIATSVAARGLDVKQLKLVINYDAPNHLEDYVHRAGRTGRAGNTGVAV 912 Query 482 VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA 520 +E I +ALE + + +M +A + Sbjct 913 TFVTPEQENCAPGIAKALEQSGQPIPDRLNEMRKAHREK 951 Score = 73.7 bits (179), Expect = 4e-12, Method: Composition-based stats. Identities = 57/323 (18%), Positives = 110/323 (34%), Gaps = 29/323 (9%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYV-AKRHLETVDGAK------VVVLVNRVHL 59 Q + + + G+++I TG+GKT A + RH++ K +++ L Sbjct 588 QMQALPALMSGRDVIGVAKTGSGKT-VAFLLPMFRHIKDQPPLKDTDGPIGLIMTPTREL 646 Query 60 VTQHGEEFRRMLD--GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE 117 Q ++ + L G V G L R ++++CT + L + + Sbjct 647 AVQIHKDCKPFLKMMGLRAVCAYGGAPIREQI-AELKRGAEIIVCTPGRMIDLLAANQGR 705 Query 118 EHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQ-----PLPQVLG-LTASPG 171 L + +V+DE +M + ++ R +P+++ LT Sbjct 706 -VTNLKRVTYVVLDEADRMFDMGFEPQVMKIFANMRPDRQTILFSATMPRIIDSLTKKVL 764 Query 172 TGGASKLDGAINHVLQLCANLDTWCIMSPQNCC--PQLQEHSQQPCKQYNLCHRRSQDPF 229 G + V + + + L E + L Q+ Sbjct 765 KNPIEVTVGGRSVVAKEIEQIVEVRDEPSKFHRVLELLGELYDRDEDARTLIFVERQEKA 824 Query 230 GDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND 289 DLLK+LM + + + + Q+ + + + L V A L Sbjct 825 DDLLKELMMKGYPCMSIHGGK----DQIDRDSTISDFKKGVVPILIATSVAARGLDVKQL 880 Query 290 ALLIHDTVRAVDALAALQDFYHR 312 L+I+ DA L+D+ HR Sbjct 881 KLVIN-----YDAPNHLEDYVHR 898 >sp|Q9LUW6|RH9_ARATH DEAD-box ATP-dependent RNA helicase 9, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RH9 PE=1 SV=1 Length=610 Score = 129 bits (325), Expect = 3e-30, Method: Composition-based stats. Identities = 53/318 (17%), Positives = 122/318 (38%), Gaps = 41/318 (13%) Query 228 PFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR-- 285 P +L +++ + + + +G QQ+ +L+ +A R+ L R Sbjct 198 PTRELARQVEKEFRESAPSLDTICLYGGTPIGQQMRELNYGIDVAVGTPGRIIDLMKRGA 257 Query 286 ---RYNDALLIHDTVRAVDALAA--LQDFYHREHVTKTQILCA---ERRLLALFDDRKNE 337 +++ + + + A ++ + + ++ + + +L N Sbjct 258 LNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQSMMFSATMPSWIRSLTKKYLNN 317 Query 338 LAHLATHGPENPKLE---MLEKILQRQF-----------SSSNSPRGIIFTRTRQSAHSL 383 + G + KL + I + + I+FT+T++ A L Sbjct 318 PLTIDLVGDSDQKLADGITMYSIAADSYGRASIIGPLVKEHGKGGKCIVFTQTKRDADRL 377 Query 384 LLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEE 443 L + + + L G ++Q ++ + F+DG ++LVAT VA Sbjct 378 AFGLAK-------SYKCEALHG--------DISQAQRERTLAGFRDGNFSILVATDVAAR 422 Query 444 GLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETL 502 GLD+P+ ++V+ Y L N + V GR RA + A + + ++I + + + Sbjct 423 GLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHGQDQTRAVKMIEKEVGSR 482 Query 503 MEQAVA-AVQKMDQAEYQ 519 + + AV++ + ++ Sbjct 483 FNELPSIAVERGSASMFE 500 Score = 56.0 bits (133), Expect = 8e-07, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 52/134 (39%), Gaps = 12/134 (9%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTR-----AAAYVAKRHLETVDGA--KVVVLVNRVHL 59 Q V+ PA+EG+++I TG GKT + K + + G + +VL L Sbjct 143 QKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVLAPTREL 202 Query 60 VTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 Q +EFR T+ G + L D+ + T + + + Sbjct 203 ARQVEKEFRESAPSLDTICLYGGTPIGQQMR-ELNYGIDVAVGTPGRIIDLM----KRGA 257 Query 120 VELTVFSLIVVDEC 133 + L+ +V+DE Sbjct 258 LNLSEVQFVVLDEA 271 >sp|A6QXC1|DBP3_AJECN ATP-dependent RNA helicase DBP3 OS=Ajellomyces capsulatus (strain NAm1 / WU24) OX=2059318 GN=DBP3 PE=3 SV=1 Length=487 Score = 128 bits (321), Expect = 3e-30, Method: Composition-based stats. Identities = 61/352 (17%), Positives = 115/352 (33%), Gaps = 70/352 (20%) Query 234 KKLMDQIHDHL-----EMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALH----- 283 ++L QIHD L L+ +G + Q L +A+ + R+ H Sbjct 153 RELAMQIHDQLVKFTPNGVGLACIYGGASKDDQRRALKKASVIVA-TPGRLKDFHSDESL 211 Query 284 LRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNELA 339 + L++ + R +D + F + + + +R +F +LA Sbjct 212 NLKKVKYLVLDEADRMLD-----KGFEQDIKDIVSAMPSSRKRQTVMFTATWPISVRKLA 266 Query 340 HLATHGPENP---------------------------KLEMLEKILQRQFSSSNS-PRGI 371 P K L +L + N+ + + Sbjct 267 TTFMKEPVTVTIGGDLSSDIRANTRIKQIVEVVKPENKESRLLSLLNQYQRGRNAMDKVL 326 Query 372 IFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGT 431 +F ++ A + +++ + G + M Q ++ + F+ G+ Sbjct 327 VFCLYKKEATRIERFIRSK--------------GFKVAGIHGDMNQTERFNSLDAFKSGS 372 Query 432 LNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRE 489 + +LVAT VA GLDIP +V+ V GR RA A + TE + Sbjct 373 VPVLVATDVAARGLDIPAVKLVLNVTFPLTVEDYVHRIGRTGRAGSDGLAITMFTENDKA 432 Query 490 LKRELI------NEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAA 535 L L+ N+ + + + V+K Y A R+ + Sbjct 433 LSGGLVNILKGANQDIPEALLKFGTTVKKKQHDSYGAFFREADTMKTATKIK 484 Score = 50.6 bits (119), Expect = 4e-05, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 41/125 (33%), Gaps = 11/125 (9%) Query 17 GKNIIIWLPTGAGKTR------AAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRM 70 G+++I TG+GKT + + V++ L Q ++ + Sbjct 107 GRDVIGVAETGSGKTLAFGVPCIRKVLEINASHSSFRISAVIITPTRELAMQIHDQLVKF 166 Query 71 LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV 130 + + G L + +++ T L+ +E + L +V+ Sbjct 167 TPNGVGLACIYGGASKDDQRRALKKAS-VIVATPGRLKD----FHSDESLNLKKVKYLVL 221 Query 131 DECHH 135 DE Sbjct 222 DEADR 226 >sp|A3LS22|RRP3_PICST ATP-dependent rRNA helicase RRP3 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) OX=322104 GN=RRP3 PE=3 SV=3 Length=484 Score = 128 bits (321), Expect = 4e-30, Method: Composition-based stats. Identities = 63/326 (19%), Positives = 117/326 (36%), Gaps = 50/326 (15%) Query 254 GTQMYEQQVVKLSEAAALAGLQEQRV--YALHLRRYNDALLIHDTVRAVDALAALQDFYH 311 G Q L + R+ + H + ++ +L + + D L L+ Sbjct 175 GGMDMMDQARDLMRKPHIIIATPGRIMDHLEHTKGFSLKMLKYFVMDEADKLLDLE---F 231 Query 312 REHVTKTQILCAERRLLALFD----DRKNELAHLATHGPE----NPKLEMLEKILQRQFS 363 + K +R LF ++ +L + H P + K + + ++Q Sbjct 232 GPVLDKILKQIPSKRTTYLFSATMTNKIEKLQRASLHNPVRVAVSSKYQTADNLIQSMML 291 Query 364 SSNSPR---------------GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN 408 S+ + IIF RTR + + ++G Sbjct 292 VSDGYKNTYLIHLLNEFVGKSIIIFARTRAHTQRTSILCR--------------ILGFSA 337 Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 +TQ + + KF+ GT N+L+AT VA GLDIP +VV+ Y + T+ + V Sbjct 338 VPLHGDLTQAQRLGSLNKFKSGTANILIATDVAARGLDIPSVDVVINYDIPTDSKAYVHR 397 Query 469 RGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMD------QAEYQA 520 GR ARA +S + + T+ E+ + + L + +D Y Sbjct 398 VGRTARAGRSGKSISLVTQYDLEMYLRIEQSIQKKLPKDPSPPKAMLDALHVHVDRAYAE 457 Query 521 KIRDLQQAALTKRAAQAAQRENQRQQ 546 IR ++ R + + + R++ Sbjct 458 AIRQTKEFHEKTRRGRRGKDDKDREE 483 Score = 52.9 bits (125), Expect = 7e-06, Method: Composition-based stats. Identities = 36/129 (28%), Positives = 48/129 (37%), Gaps = 5/129 (4%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q E I ALEGK+II TG+GKT A A + + E +VL L Q E Sbjct 98 QSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWEAQTPYFGLVLAPARELAYQIKE 157 Query 66 EFRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 F + L G M L R ++I T + L + L + Sbjct 158 TFDALGSTMGVRTVCLVGGMDMMDQARDLMRKPHIIIATPGRIMDHLEHTKG---FSLKM 214 Query 125 FSLIVVDEC 133 V+DE Sbjct 215 LKYFVMDEA 223 >sp|A7TJ36|DBP3_VANPO ATP-dependent RNA helicase DBP3 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 GN=DBP3 PE=3 SV=1 Length=530 Score = 128 bits (322), Expect = 4e-30, Method: Composition-based stats. Identities = 41/211 (19%), Positives = 81/211 (38%), Gaps = 23/211 (11%) Query 333 DRKNELAHLATHGPENPKLEMLEKILQRQFSSSN-SPRGIIFTRTRQSAHSLLLWLQQQQ 391 + + K L ++L++ S S + +IF ++ A + L Sbjct 331 SANKRITQIVEVIDPFKKERKLLELLKKYQSGSKKDDKVLIFALYKKEAARVERNLN--- 387 Query 392 GLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN 451 G S+ ++Q+ + + +F+ G ++L+AT VA GLDIP+ Sbjct 388 -----------YNGYKVSAIHGDLSQQQRTNALDEFKTGRSSILLATDVAARGLDIPNVK 436 Query 452 VVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELIN------EALETLM 503 V+ V GR RA ++ A + TE + L L+N + + + Sbjct 437 TVINLTFPLTVEDYVHRIGRTGRAGKTGTAHTLFTEQEKHLAGSLVNVLNGAGQPVPEEL 496 Query 504 EQAVAAVQKMDQAEYQAKIRDLQQAALTKRA 534 ++ +K + + Y A +D+ K+ Sbjct 497 KKFGTHTKKKEHSAYGAFYKDVDMTKKAKKI 527 Score = 55.2 bits (131), Expect = 1e-06, Method: Composition-based stats. Identities = 52/340 (15%), Positives = 107/340 (31%), Gaps = 26/340 (8%) Query 15 LEGKNIIIWLPTGAGKTRA----AAYVAKRHLETVDGA---KVVVLVNRVHLVTQHGEEF 67 L GK++I TG+GKT A A + G +V+++ L +Q + Sbjct 150 LAGKDVIGVAETGSGKTFAFGVPAINNILTKSGSKPGKNGIQVLIISPTRELASQIYDNL 209 Query 68 RRMLDGR-WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS 126 + D + G + L R +++ T L + +E L+ + Sbjct 210 VILTDKVGLECCCVYGGVPKDEQRTQLKRS-QVVVATPGRLLDLI----QEGAANLSNVN 264 Query 127 LIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVL 186 +V+DE + + + + + Q L TA+ +N + Sbjct 265 YLVLDEADRMLEKG-FEEDIKNIIRETKSTGR---QTLMFTATWPKEVRELASTFMNSPI 320 Query 187 QL----CANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHD 242 ++ L ++ + ++ + S+ L+ L + Sbjct 321 KVSIGNTDELSANKRITQIVEVIDPFKKERKLLELLKKYQSGSKKDDKVLIFALYKKEAA 380 Query 243 HLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDA 302 +E + + + AL + R L L V+ V Sbjct 381 RVERNLNYNGYKVSAIHGDLSQQQRTNALDEFKTGRSSILLATDVAARGLDIPNVKTVIN 440 Query 303 LAA---LQDFYHREHVTKTQILCAERRLLALFDDRKNELA 339 L ++D+ HR + +T LF +++ LA Sbjct 441 LTFPLTVEDYVHR--IGRTGRAGKTGTAHTLFTEQEKHLA 478 >sp|A5A6J2|DDX5_PANTR Probable ATP-dependent RNA helicase DDX5 OS=Pan troglodytes OX=9598 GN=DDX5 PE=2 SV=1 Length=614 Score = 129 bits (324), Expect = 4e-30, Method: Composition-based stats. Identities = 57/350 (16%), Positives = 118/350 (34%), Gaps = 51/350 (15%) Query 170 PGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPF 229 P A ++ + C L + CI PQ+++ ++ + R D Sbjct 175 PTRELAQQVQQVAAEYCRACR-LKSTCIYGGAPKGPQIRD-LERGVENCIATPGRLIDFL 232 Query 230 GDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALA--GLQEQRVYALHLRRY 287 L + L+ + G +E Q+ K+ + L + +R+ Sbjct 233 ECGKTNLRRTTYLVLDEADRMLDMG---FEPQIRKIVDQIRPDRQTLMWSATWPKEVRQL 289 Query 288 NDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPE 347 + L+D+ H + AL + + + + Sbjct 290 AE--------------DFLKDYIHIN-------------IGALELSANHNILQIVDVCHD 322 Query 348 NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG 407 K E L + L + S + I+F T++ L +++ G Sbjct 323 VEKDEKLIR-LMEEIMSEKENKTIVFVETKRRCDELTRKMRRD--------------GWP 367 Query 408 NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 +Q+++ V+ +F+ G +L+AT VA GLD+ V+ Y + + Sbjct 368 AMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIH 427 Query 468 ARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQ 515 GR AR+ ++ A+ T + + +LI+ E +Q ++ Sbjct 428 RIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQLVED 477 Score = 43.2 bits (100), Expect = 0.007, Method: Composition-based stats. Identities = 58/360 (16%), Positives = 110/360 (31%), Gaps = 38/360 (11%) Query 14 ALEGKNIIIWLPTGAGKTRA----AAYVAKR--HLETVDGAKVVVLVNRVHLVTQ-HGEE 66 AL G +++ TG+GKT + A LE DG +VL L Q Sbjct 128 ALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVA 187 Query 67 FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS 126 R T + G L R + I T L L E L + Sbjct 188 AEYCRACRLKSTCIYGGAPKGPQIRDLERGVENCIATPGRLIDFL----ECGKTNLRRTT 243 Query 127 LIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVL 186 +V+DE + ++ E ++++ + P V Sbjct 244 YLVLDEA---------DRMLDMGFEPQIRKIVDQIR-------PDRQTLMWSATWPKEVR 287 Query 187 QLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEM 246 QL + + +L + + ++CH +D + L +LM++I E Sbjct 288 QLAEDF-LKDYIHINIGALELSANHNI-LQIVDVCHDVEKD---EKLIRLMEEIMSEKEN 342 Query 247 PELSRKFGTQMYEQQVVKLSEAAAL------AGLQEQRVYALHLRRYNDALLIHDTVRAV 300 + + ++ K+ Q++R + L+ ++ A ++ T A Sbjct 343 KTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVAS 402 Query 301 DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQR 360 L + + R+ K A+ ++ L +L+ Sbjct 403 RGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLRE 462 >sp|Q6YS30|RH5_ORYSJ DEAD-box ATP-dependent RNA helicase 5 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0301200 PE=2 SV=1 Length=512 Score = 128 bits (321), Expect = 5e-30, Method: Composition-based stats. Identities = 41/185 (22%), Positives = 74/185 (40%), Gaps = 22/185 (12%) Query 358 LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ 417 L ++ + R ++F ++ A + LQ++ G S Q Sbjct 333 LLDKYHKAQRNRVLVFVLYKREATRVETMLQRR--------------GWSAVSVHGDKAQ 378 Query 418 RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQ 476 D+ + + F++G+ L++AT VA GLDIP VV+ Y V GR RA + Sbjct 379 HDRTKALSLFKEGSCPLMIATDVASRGLDIPDVEVVINYSYPLTTEDYVHRIGRTGRAGK 438 Query 477 SVYAF-VATEGSRELKRELINEALET------LMEQAVAAVQKMDQAEYQAKIRDLQQAA 529 A T+ ++ L EL+N E + + V+K + Y + ++++ A Sbjct 439 KGVAHTFFTQENKGLAGELVNVLREAGQVVPPALTKFGTHVKKKESQIYGSHFKEIKADA 498 Query 530 LTKRA 534 Sbjct 499 PKSTK 503 Score = 50.6 bits (119), Expect = 4e-05, Method: Composition-based stats. Identities = 26/132 (20%), Positives = 45/132 (34%), Gaps = 17/132 (13%) Query 15 LEGKNIIIWLPTGAGKTRAAAYV--AKRHLETVDGA-------KVVVLVNRVHLVTQHGE 65 L+G++ I TG+GKT A V + +V+VL L Q Sbjct 127 LDGRDFIGIAATGSGKT-IAFGVPALMHVRRKMGEKSAKKGVPRVLVLSPTREL-AQQIA 184 Query 66 EFRRMLDGRWTVTTLS--GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELT 123 + ++++ G L D++I T ++ + E L Sbjct 185 DVLCEAGAPCGISSVCLYGGTSKGPQISALKSGVDIVIGTPGRMKDLI----EMGICRLN 240 Query 124 VFSLIVVDECHH 135 S +V+DE Sbjct 241 DVSFVVLDEADR 252 >sp|A0A1D6LAB7|RH3B_MAIZE DEAD-box ATP-dependent RNA helicase 3B, chloroplastic OS=Zea mays OX=4577 GN=RH3B PE=2 SV=1 Length=743 Score = 129 bits (325), Expect = 5e-30, Method: Composition-based stats. Identities = 65/378 (17%), Positives = 133/378 (35%), Gaps = 44/378 (12%) Query 166 LTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRS 225 L A TG L I + QL D + + +++ KQ + S Sbjct 128 LIARAKTGTGKTLAFGIPMIKQLIEQDDGRITRRGRTPRVLVLAPTRELAKQVEKEIKES 187 Query 226 QDPFGDL-------LKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQR 278 G + + + +++ + + ++L E L + + Sbjct 188 APKLGTVCVYGGVSYNVQQNALSRGVDVVVGTPGRIIDLINGGSLQLGEVQYLVLDEADQ 247 Query 279 VYALHLRRYND-ALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNE 337 + A+ + L R +A + ++ + L+ D++ E Sbjct 248 MLAVGFEEDVETILQQLPAGRQSMLFSATMPSWVKKLSRRYLNNPLTIDLVGDQDEKLAE 307 Query 338 -LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTV 396 + A K +L ++ + + I+FTRT++ A + L L Sbjct 308 GIKLYAIPLTTTSKRTVLSDLITVY---AKGGKTIVFTRTKKDADEVSLALTNS------ 358 Query 397 DIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY 456 + + ++Q ++ + F+ G +LVAT VA GLDIP+ ++++ Y Sbjct 359 ---------IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY 409 Query 457 GLLTNEISMVQARGR-ARADQSVYAFVATEGS-----RELKREL-----------INEAL 499 L + + V GR RA ++ A + S + L+R++ I E L Sbjct 410 ELPNDPETFVHRSGRTGRAGKAGTAILMFTSSQKRTVKSLERDVGCNFEFISPPSIEEVL 469 Query 500 ETLMEQAVAAVQKMDQAE 517 E+ E +A ++ + Sbjct 470 ESSAEHVIATLRGVHPES 487 Score = 60.6 bits (145), Expect = 3e-08, Method: Composition-based stats. Identities = 35/136 (26%), Positives = 58/136 (43%), Gaps = 14/136 (10%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGA--------KVVVLVNRV 57 Q V++PALEG+++I TG GKT A + K+ +E DG +V+VL Sbjct 115 QRAVLIPALEGRDLIARAKTGTGKTLAFGIPMIKQLIEQDDGRITRRGRTPRVLVLAPTR 174 Query 58 HLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE 117 L Q +E + TV G + L+R D+++ T + + Sbjct 175 ELAKQVEKEIKESAPKLGTVCVYGG-VSYNVQQNALSRGVDVVVGTPGRIIDLING---- 229 Query 118 EHVELTVFSLIVVDEC 133 ++L +V+DE Sbjct 230 GSLQLGEVQYLVLDEA 245 >sp|Q9SA27|RH36_ARATH DEAD-box ATP-dependent RNA helicase 36 OS=Arabidopsis thaliana OX=3702 GN=RH36 PE=2 SV=1 Length=491 Score = 127 bits (319), Expect = 5e-30, Method: Composition-based stats. Identities = 77/431 (18%), Positives = 151/431 (35%), Gaps = 79/431 (18%) Query 149 YLELKLQRAQPLPQ-VLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQL 207 + L R P V L +P A +L + C NL I+ + Q Sbjct 112 FALPILHRLAEDPYGVFALVVTPTRELAFQLAEQFKALGS-CLNLRCSVIVGGMDMLTQT 170 Query 208 QEHSQQPCK--------QYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYE 259 +P + L + P K L + + + + ++ Sbjct 171 MSLVSRPHIVITTPGRIKVLLENNPDVPPVFSRTKFL---------VLDEADRVLDVGFQ 221 Query 260 QQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQ 319 ++ + + L ++ +++ + ALL H + +A FY KT Sbjct 222 DELRTIFQC--LPKSRQTLLFSATMTSNLQALLEHSSNKA--------YFYEAYEGLKTV 271 Query 320 ILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQS 379 ++ + F+D+ K L IL + +IF T ++ Sbjct 272 DTLTQQFI---FEDKDA-------------KELYLVHILSQM-EDKGIRSAMIFVSTCRT 314 Query 380 AHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATS 439 L L L + + N + + +Q + + KF+ G + +L+AT Sbjct 315 CQRLSLMLDELE--------------VENIAMHSLNSQSMRLSALSKFKSGKVPILLATD 360 Query 440 VAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSREL---KREL 494 VA GLDIP ++V+ Y + + V GR ARA + A + TE +L E Sbjct 361 VASRGLDIPTVDLVINYDIPRDPRDYVHRVGRTARAGRGGLAVSIITETDVKLIHKIEEE 420 Query 495 INEALETLMEQAVA--------------AVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR 540 + + +E ++ + A+ KM ++ K++D ++ A + + Sbjct 421 VGKKMEPYNKKVITDSLEVTKVSKAKRVAMMKMLDNGFEDKVKDRRKLKRKTLADKGLLK 480 Query 541 ENQRQQFPVEH 551 + ++Q E+ Sbjct 481 KRGKRQKSTEN 491 Score = 45.9 bits (107), Expect = 0.001, Method: Composition-based stats. Identities = 26/133 (20%), Positives = 45/133 (34%), Gaps = 7/133 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQ--- 62 Q + L G++++ TG+GKT A A L +V+ L Q Sbjct 85 QTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHRLAEDPYGVFALVVTPTRELAFQLAE 144 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 + L+ R +V DM + L ++I T + L + Sbjct 145 QFKALGSCLNLRCSVIVGGMDMLTQTM--SLVSRPHIVITTPGRI-KVLLENNPDVPPVF 201 Query 123 TVFSLIVVDECHH 135 + +V+DE Sbjct 202 SRTKFLVLDEADR 214 >sp|Q4R6M5|DDX5_MACFA Probable ATP-dependent RNA helicase DDX5 OS=Macaca fascicularis OX=9541 GN=DDX5 PE=2 SV=1 Length=614 Score = 129 bits (323), Expect = 6e-30, Method: Composition-based stats. Identities = 50/318 (16%), Positives = 106/318 (33%), Gaps = 45/318 (14%) Query 228 PFGDLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEAAALAGLQEQRV-----Y 280 P +L +++ ++ L +G Q+ L + R+ Sbjct 175 PTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEC 234 Query 281 ALHLRRYNDALLIHDTVRAVD-----ALAALQDFYHREHVTKTQILCAERRLLALFDDRK 335 R L++ + R +D + + D + T + + L +D Sbjct 235 GKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFL 294 Query 336 NELAHLAT----------------HGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQS 379 + H+ + K E L + L + S + I+F T++ Sbjct 295 KDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIR-LMEEIMSEKENKTIVFVETKRR 353 Query 380 AHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATS 439 L +++ G +Q+++ V+ +F+ G +L+AT Sbjct 354 CDELTRKMRRD--------------GWPAMGIHGDKSQQERGWVLNEFKHGKAPILIATD 399 Query 440 VAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINE 497 VA GLD+ V+ Y + + GR AR+ ++ A+ T + + +LI+ Sbjct 400 VASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISV 459 Query 498 ALETLMEQAVAAVQKMDQ 515 E +Q ++ Sbjct 460 LREANQAINPKLLQLVED 477 Score = 46.3 bits (108), Expect = 9e-04, Method: Composition-based stats. Identities = 58/360 (16%), Positives = 111/360 (31%), Gaps = 38/360 (11%) Query 14 ALEGKNIIIWLPTGAGKTRA----AAYVAKR--HLETVDGAKVVVLVNRVHLVTQ-HGEE 66 AL G +++ TG+GKT + A LE DG +VL L Q Sbjct 128 ALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVA 187 Query 67 FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS 126 R T + G L R ++ I T L L E L + Sbjct 188 AEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFL----ECGKTNLRRTT 243 Query 127 LIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVL 186 +V+DE + ++ E ++++ + P V Sbjct 244 YLVLDEA---------DRMLDMGFEPQIRKIVDQIR-------PDRQTLMWSATWPKEVR 287 Query 187 QLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEM 246 QL + + +L + + ++CH +D + L +LM++I E Sbjct 288 QLAEDF-LKDYIHINIGALELSANHNI-LQIVDVCHDVEKD---EKLIRLMEEIMSEKEN 342 Query 247 PELSRKFGTQMYEQQVVKLSEAAAL------AGLQEQRVYALHLRRYNDALLIHDTVRAV 300 + + ++ K+ Q++R + L+ ++ A ++ T A Sbjct 343 KTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERGWVLNEFKHGKAPILIATDVAS 402 Query 301 DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQR 360 L + + R+ K A+ ++ L +L+ Sbjct 403 RGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLRE 462 >sp|Q4PHU9|DBP2_USTMA ATP-dependent RNA helicase DBP2 OS=Ustilago maydis (strain 521 / FGSC 9021) OX=237631 GN=DBP2 PE=3 SV=2 Length=552 Score = 128 bits (321), Expect = 6e-30, Method: Composition-based stats. Identities = 60/283 (21%), Positives = 101/283 (36%), Gaps = 50/283 (18%) Query 253 FGTQMYEQQVVKLSEAAALAGLQEQRVY------ALHLRRYNDALLIHDTVRAVD----- 301 +G Q+ L A + R+ +LRR L++ + R +D Sbjct 238 YGGVPKGPQIRDLQRGAEICIATPGRLIDMVDAGKTNLRR-VTYLVMDEADRMLDMGFEP 296 Query 302 ----ALAALQDFYHREHVTKTQILCAERRLLALFDDR-------------KNELAHLATH 344 L ++ + T +RL F + + + + Sbjct 297 QIRKILQQIRPDRQTLMFSATW-PKEVQRLAGDFLNNYAQVNIGSTELAANHNVKQIIEV 355 Query 345 GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI 404 E K L L+ S+ + + IIFT T++ A L +L+Q Sbjct 356 CTEFEKKGKLIGHLETI--SAENGKVIIFTSTKRVADDLTKFLRQD-------------- 399 Query 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 G + Q+++ V+ +F+ G ++VAT+VA GLD+ + V+ Y TN Sbjct 400 GWPALAIHGDKQQQERDWVLAEFKSGRSPIMVATAVASRGLDVKDISYVINYDFPTNTED 459 Query 465 MVQ---ARGRARADQSVYAFVATEGSRELKRELINEALETLME 504 V GRA + Y + E S+ RELI E E Sbjct 460 YVHQIGRTGRAGRTGTAYTYFTPENSKS-ARELIGILREAKQE 501 Score = 50.6 bits (119), Expect = 4e-05, Method: Composition-based stats. Identities = 28/129 (22%), Positives = 46/129 (36%), Gaps = 11/129 (9%) Query 14 ALEGKNIIIWLPTGAGKTR-AAAYVAKRH-----LETVDGAKVVVLVNRVHLVTQ-HGEE 66 AL G++++ TG+GKT A L+ DG ++L L Q E Sbjct 164 ALSGRDLVAIAETGSGKTIGFALPAMVHINAQPLLKPGDGPIALILAPTRELANQIQVEC 223 Query 67 FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS 126 R R + G + L R ++ I T L + + + L + Sbjct 224 NRFGGSSRLRTCAVYGGVPKGPQIRDLQRGAEICIATPGRLIDMVDAGKTN----LRRVT 279 Query 127 LIVVDECHH 135 +V+DE Sbjct 280 YLVMDEADR 288 >sp|Q3MSQ8|DDX4_PELLE Probable ATP-dependent RNA helicase DDX4 OS=Pelophylax lessonae OX=45623 GN=ddx4 PE=2 SV=1 Length=724 Score = 129 bits (324), Expect = 6e-30, Method: Composition-based stats. Identities = 49/309 (16%), Positives = 115/309 (37%), Gaps = 24/309 (8%) Query 218 YNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQ 277 Y C R G + + QI + + + + ++ + L++ L + Sbjct 388 YGTCVRPVVIYGGTQMFHSLKQISEGCNILCATPGRLLDVIRKEKIGLTKLRYLVLDEAD 447 Query 278 RVYALHLRRYNDALLIHDTV-----RAVDALAALQDFYHREHVTKTQILCAERRLLALFD 332 R+ + R + LL + R +A + + ++ Sbjct 448 RMLDMGFREDIENLLKSSGMPSKEERQTLMFSATFPSSIQSLAREILKPDYLFVVVGQVG 507 Query 333 DRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQG 392 +++ + E K + L +ILQ S R ++F +T++ A + +L Q++ Sbjct 508 GACSDVEQMVIEVDEFGKKDKLMEILQEI----GSERTMVFVKTKKKADFIATFLCQEK- 562 Query 393 LQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNV 452 ++S Q++++ ++ F+ G ++VATSVA GLDI + + Sbjct 563 -------------VPSTSIHGDREQKERETALRDFRTGQCPVIVATSVAARGLDIENVSY 609 Query 453 VVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQ 511 V+ + + + V GR R + A + + ++ + ++ L + Sbjct 610 VINFDIPDDIDEYVHRIGRTGRCGNTGRAISFFDKRGDDEQRIARSLVKVLSDAHQEVPA 669 Query 512 KMDQAEYQA 520 +++ + A Sbjct 670 WLEEVAFSA 678 Score = 47.5 bits (111), Expect = 4e-04, Method: Composition-based stats. Identities = 23/130 (18%), Positives = 47/130 (36%), Gaps = 15/130 (12%) Query 17 GKNIIIWLPTGAGKTRAAAYVAKRHL----------ETVDGAKVVVLVNRVHLVTQHGEE 66 G++++ TG+GKT A HL +T+ + +++ L+ Q + Sbjct 323 GRDLMACAQTGSGKTAAFLLPILAHLMVKGVESSAFQTLKEPEAIIVAPTRELINQIYLD 382 Query 67 FRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF 125 R+ + G ++ ++L T L + +E + LT Sbjct 383 ARKFSYGTCVRPVVIYGGTQMFHSLKQISEGCNILCATPGRLLDVI----RKEKIGLTKL 438 Query 126 SLIVVDECHH 135 +V+DE Sbjct 439 RYLVLDEADR 448 >sp|A4QSS5|DBP2_PYRO7 ATP-dependent RNA helicase DBP2 OS=Pyricularia oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 GN=DBP2 PE=3 SV=1 Length=548 Score = 128 bits (321), Expect = 6e-30, Method: Composition-based stats. Identities = 58/346 (17%), Positives = 116/346 (34%), Gaps = 50/346 (14%) Query 193 DTWCIMSPQNCCPQLQEHSQQPCKQY-NLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSR 251 +T + C P + + QP + P +L ++ +I + + Sbjct 170 ETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLILAPTRELAVQIQAEISKFGKSSRIRN 229 Query 252 K--FGTQMYEQQVVKLSEAAALAGLQEQRVY------ALHLRRYNDALLIHDTVRAVD-- 301 +G Q+ LS + R+ +LRR L++ + R +D Sbjct 230 TCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLESGKTNLRR-VTYLVLDEADRMLDMG 288 Query 302 -------ALAALQDFYHREHVTKTQILCAERRLLALFDDRKN------------ELAHLA 342 + ++ + T D + + Sbjct 289 FEPQIRKIIGQIRPDRQTLMWSATWPKEVRNMAADFLQDFIQVNIGSLDLSANHRITQIV 348 Query 343 THGPENPKLEMLEKILQRQFSSSNSP-RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQ 401 E+ K + + + +++ +S + +IF T++ A + +L+Q Sbjct 349 EVVSESEKRDRMIRHMEKVMDGKDSKNKILIFVGTKRVADEITRFLRQD----------- 397 Query 402 LLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN 461 G S Q ++ V+ +F+ G ++VAT VA G+D+ + V+ Y N Sbjct 398 ---GWPALSIHGDKQQNERDWVLDQFKTGKSPIMVATDVASRGIDVRNITHVLNYDYPNN 454 Query 462 EISMVQAR---GRARADQSVYAFVATEGSRELKRELINEALETLME 504 + GRA A + F TE S++ R+L+ E E Sbjct 455 SEDYIHRIGRTGRAGAKGTAITFFTTENSKQ-ARDLLGVLQEAKQE 499 Score = 53.6 bits (127), Expect = 4e-06, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 49/129 (38%), Gaps = 11/129 (9%) Query 14 ALEGKNIIIWLPTGAGKTRA----AAYVA--KRHLETVDGAKVVVLVNRVHLVTQHGEEF 67 AL G++++ TG+GKT A + L DG V++L L Q E Sbjct 159 ALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLILAPTRELAVQIQAEI 218 Query 68 RRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS 126 + R T + G + L+R ++ I T L L S + L + Sbjct 219 SKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLESGKTN----LRRVT 274 Query 127 LIVVDECHH 135 +V+DE Sbjct 275 YLVLDEADR 283 >sp|Q5L3G9|CSHA_GEOKA DEAD-box ATP-dependent RNA helicase CshA OS=Geobacillus kaustophilus (strain HTA426) OX=235909 GN=cshA PE=3 SV=1 Length=467 Score = 126 bits (317), Expect = 8e-30, Method: Composition-based stats. Identities = 64/363 (18%), Positives = 124/363 (34%), Gaps = 47/363 (13%) Query 211 SQQPCKQYNLCHRRSQDPFGDLLKKLMDQIH--DHLEMPELSRKFGTQMYEQQVVKLSEA 268 ++ + + P +L ++ ++++ ++ + +G Q E+Q+ L + Sbjct 61 VEKVNVKNSAVQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALKKH 120 Query 269 AALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLL 328 + R+ R +H V F + + + LL Sbjct 121 PHVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPAERQTLL 180 Query 329 --ALFDDRKNELAHLATHGPENPKLE-------------------MLEKILQRQFSSSNS 367 A D +A + PE K++ IL R Sbjct 181 FSATMPDPIRRIAERFMNEPELVKVKAKEMTVPNIQQYYLEVHEKKKFDILTRLLDIQAP 240 Query 368 PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF 427 I+F RT++ L L L G ++Q + V++KF Sbjct 241 ELAIVFGRTKRRVDELAEALN--------------LRGYAAEGIHGDLSQAKRLSVLRKF 286 Query 428 QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYA--FVAT 484 ++G + +LVAT VA GLDI V + + + S V GR RA ++ A FV Sbjct 287 KEGAIEILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTP 346 Query 485 EGSRELK------RELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA 538 +L + + +++A+ Q++ + + + + + KRAA+ Sbjct 347 REIGQLHHIERTTKRKMERMKPPTLDEALEGQQRIAIEKLLNVV-ETENLSFYKRAAEEL 405 Query 539 QRE 541 E Sbjct 406 LEE 408 Score = 45.6 bits (106), Expect = 0.001, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 48/129 (37%), Gaps = 6/129 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE 65 Q + I +L+ K++I TG GKT A + + A + +V+ L Q E Sbjct 29 QAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIVEKVNVKNSAVQALVVAPTRELAIQVSE 88 Query 66 EFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 E ++ R V + G L + +++ T + + + L Sbjct 89 ELYKIGAVKRVRVLPIYGGQDIERQIRALKKHPHVIVGTPGRIIDHIN----RGTLRLEH 144 Query 125 FSLIVVDEC 133 +V+DE Sbjct 145 VHTVVLDEA 153 >sp|Q2U070|DBP2_ASPOR ATP-dependent RNA helicase dbp2 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=dbp2 PE=3 SV=1 Length=554 Score = 127 bits (320), Expect = 8e-30, Method: Composition-based stats. Identities = 40/207 (19%), Positives = 80/207 (39%), Gaps = 19/207 (9%) Query 297 VRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEK 356 R +A R+ + + + ++ + + + + K + + K Sbjct 308 DRQTCMWSATWPKEVRQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIK 367 Query 357 ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT 416 L++ + + +IFT T++ A + +L+Q G S Sbjct 368 HLEKIME-NRGNKCLIFTGTKRIADEITRFLRQD--------------GWPALSIHGDKQ 412 Query 417 QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR---GRAR 473 Q+++ V+ +F+ G ++VAT VA G+D+ V+ Y N V GRA Sbjct 413 QQERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAG 472 Query 474 ADQSVYAFVATEGSRELKRELINEALE 500 A + F T+ S++ R+L+ E Sbjct 473 AKGTAITFFTTDNSKQ-ARDLVTILTE 498 Score = 51.3 bits (121), Expect = 2e-05, Method: Composition-based stats. Identities = 32/129 (25%), Positives = 49/129 (38%), Gaps = 11/129 (9%) Query 14 ALEGKNIIIWLPTGAGKTRA----AAYVA--KRHLETVDGAKVVVLVNRVHLVTQHGEEF 67 AL G++++ TG+GKT + A + L DG V+VL L Q E Sbjct 164 ALSGRDVVGIAETGSGKTLSYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQAEI 223 Query 68 RRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS 126 + R T + G + L+R ++ I T L L E L + Sbjct 224 TKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDML----EAGRTNLRRVT 279 Query 127 LIVVDECHH 135 +V+DE Sbjct 280 YLVLDEADR 288 >sp|A0A1D6GDY8|RH3A_MAIZE DEAD-box ATP-dependent RNA helicase 3A, chloroplastic OS=Zea mays OX=4577 GN=RH3A PE=3 SV=1 Length=745 Score = 129 bits (323), Expect = 9e-30, Method: Composition-based stats. Identities = 70/383 (18%), Positives = 140/383 (37%), Gaps = 44/383 (11%) Query 166 LTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRS 225 L A TG L I + QL D + + +++ KQ + S Sbjct 128 LIARAKTGTGKTLAFGIPMIKQLMEQDDGRSTRRGRTPRVLVLAPTRELAKQVEKEIKES 187 Query 226 QDPFGDL-------LKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQR 278 G + + + +++ + + ++L E L + + Sbjct 188 APKLGTVCVYGGVSYNVQQNALSRGVDVVVGTPGRIIDLINGGSLQLGEVQYLVLDEADQ 247 Query 279 VYALHLRRYND-ALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNE 337 + A+ + L R +A + ++ + L+ D++ E Sbjct 248 MLAVGFEEDVETILQQLPADRQSMLFSATMPSWVKKLSRRYLNNPLTIDLVGDQDEKLAE 307 Query 338 -LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTV 396 + A K +L ++ + + I+FTRT++ A + L L T Sbjct 308 GIKLHAIPLTATSKRTILSDLITVY---AKGGKTIVFTRTKKDADEVSLAL-------TT 357 Query 397 DIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY 456 I ++ L G ++Q ++ + F+ G +LVAT VA GLDIP+ ++++ Y Sbjct 358 SIASEALHG--------DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY 409 Query 457 GLLTNEISMVQARGR-ARADQSVYAFVATEGSRE-----LKREL-----------INEAL 499 L + + V GR RA ++ A + S++ L+R++ I E L Sbjct 410 ELPNDPETFVHRSGRTGRAGKAGTAILMFTSSQKRTVMSLERDVGCKFEFISPPSIEEVL 469 Query 500 ETLMEQAVAAVQKMDQAEYQAKI 522 E+ E +A ++ + Q + Sbjct 470 ESSAEHVIATLRGVHPESTQYFL 492 Score = 58.3 bits (139), Expect = 2e-07, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 57/136 (42%), Gaps = 14/136 (10%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGA--------KVVVLVNRV 57 Q V++PAL G+++I TG GKT A + K+ +E DG +V+VL Sbjct 115 QRAVLIPALGGRDLIARAKTGTGKTLAFGIPMIKQLMEQDDGRSTRRGRTPRVLVLAPTR 174 Query 58 HLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE 117 L Q +E + TV G + L+R D+++ T + + Sbjct 175 ELAKQVEKEIKESAPKLGTVCVYGG-VSYNVQQNALSRGVDVVVGTPGRIIDLING---- 229 Query 118 EHVELTVFSLIVVDEC 133 ++L +V+DE Sbjct 230 GSLQLGEVQYLVLDEA 245 >sp|P96614|CSHA_BACSU DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus subtilis (strain 168) OX=224308 GN=cshA PE=1 SV=2 Length=494 Score = 127 bits (318), Expect = 9e-30, Method: Composition-based stats. Identities = 60/391 (15%), Positives = 122/391 (31%), Gaps = 57/391 (15%) Query 168 ASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQD 227 A+P L + V+ ++ S R Sbjct 26 ATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVEKINPESPNIQAIVIAPTRELAI 85 Query 228 PFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQR----VYALH 283 + L K+ + ++ +G Q +Q+ L + + R + Sbjct 86 QVSEELYKI-----GQDKRAKVLPIYGGQDIGRQIRALKKNPNIIVGTPGRLLDHINRRT 140 Query 284 LRRYNDALLIHDTVRAVDALAALQDFY---------HREHVTKTQILCAERRLLALF--- 331 +R N ++ D + + + D H+ + + +R+ F Sbjct 141 IRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLLFSATMPAPIKRIAERFMTE 200 Query 332 ---------DDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHS 382 + + + E K + L ++L Q + I+F RT++ Sbjct 201 PEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQ----SPELAIVFGRTKRRVDE 256 Query 383 LLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAE 442 L L L G +TQ + ++KF++G + +LVAT VA Sbjct 257 LAEALN--------------LRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVAA 302 Query 443 EGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVAT--------EGSRELKRE 493 GLDI V + + + S V GR RA ++ A + + Sbjct 303 RGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQTTKR 362 Query 494 LINEALETLMEQAVAAVQKMDQAEYQAKIRD 524 ++ E +++A+ Q++ + I + Sbjct 363 KMDRMKEPTLDEALEGQQQVTVERLRTTISE 393 Score = 51.3 bits (121), Expect = 2e-05, Method: Composition-based stats. Identities = 27/129 (21%), Positives = 49/129 (38%), Gaps = 6/129 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q + I L K++I TG GKT A + ++ + +V+ L Q E Sbjct 30 QAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVEKINPESPNIQAIVIAPTRELAIQVSE 89 Query 66 EFRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 E ++ D R V + G L + ++++ T L + + L Sbjct 90 ELYKIGQDKRAKVLPIYGGQDIGRQIRALKKNPNIIVGTPGRLLDHINRRT----IRLNN 145 Query 125 FSLIVVDEC 133 + +V+DE Sbjct 146 VNTVVMDEA 154 >sp|Q6GWX0|DDX4_PIG Probable ATP-dependent RNA helicase DDX4 OS=Sus scrofa OX=9823 GN=DDX4 PE=2 SV=1 Length=722 Score = 128 bits (322), Expect = 1e-29, Method: Composition-based stats. Identities = 53/296 (18%), Positives = 102/296 (34%), Gaps = 54/296 (18%) Query 255 TQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDA-LLIHDTVRAVDALAALQDFYHRE 313 Q V + A G + + L++ + R +D + ++ Sbjct 404 GHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEM---KK 460 Query 314 HVTKTQILCAERRLLALFD----DRKNELAHLATHGP----------------------- 346 ++ + E+R +F + LA Sbjct 461 LISCPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQADLQV 520 Query 347 -ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 + K E L +IL+ R ++F T++ A + +L Q++ Sbjct 521 GQYSKREKLLEILRNI----GDERTMVFVETKKKADFIATFLCQEK-------------- 562 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465 +S QR++++ + F+ G +LVATSVA GLDI + V+ + L + Sbjct 563 ISTTSIHGDREQREREQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEY 622 Query 466 VQARGR-ARADQSVYA--FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEY 518 V GR R + A F E L + L+ + L + A ++++ + Y Sbjct 623 VHRIGRTGRCGNTGRAISFFDLESDNHLAQPLV-KVLTDAQQDVPAWLEEIAFSTY 677 Score = 51.7 bits (122), Expect = 2e-05, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 56/166 (34%), Gaps = 16/166 (10%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRH----------LETVDGAKVVVLVNRVHLVTQHG 64 L G++++ TG+GKT A H + + + +++ LV Q Sbjct 321 LAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIY 380 Query 65 EEFRRM-LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELT 123 E R+ + G + + ++L T L + + + L Sbjct 381 LEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEK----IGLK 436 Query 124 VFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS 169 +V+DE D + M + + ++ Q L +A+ Sbjct 437 QIKYLVLDEADR-MLDMGFGPEMKKLISCPGMPSKEQRQTLMFSAT 481 >sp|Q5AWA6|DBP3_EMENI ATP-dependent RNA helicase dbp3 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=dbp3 PE=3 SV=2 Length=488 Score = 126 bits (317), Expect = 1e-29, Method: Composition-based stats. Identities = 42/208 (20%), Positives = 79/208 (38%), Gaps = 23/208 (11%) Query 335 KNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQ 394 + + + + K + L +IL R + + F ++ A + L+ + Sbjct 292 NSRIKQVVEVVKPHEKEQRLVQILNRH-QRGTPDKVLAFCLYKKEAMRVERLLRTK---- 346 Query 395 TVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV 454 G + ++Q+++ ++ F+ G +LVAT VA GLDIPH +VV Sbjct 347 ----------GFKVAGIHGDLSQQERFRSLEAFKSGAATVLVATDVAARGLDIPHVKLVV 396 Query 455 RYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELI------NEALETLMEQA 506 V GR RA +A + TE + LI N+ + + + Sbjct 397 NVTFPLTVEDYVHRIGRTGRAGADGHAITLFTETDKAQSGALINVLKAANQEVPEALLKF 456 Query 507 VAAVQKMDQAEYQAKIRDLQQAALTKRA 534 + V+K Y A +D++ + Sbjct 457 GSTVKKKQHDAYGAFFKDVEPGKAATKI 484 Score = 46.7 bits (109), Expect = 7e-04, Method: Composition-based stats. Identities = 24/127 (19%), Positives = 49/127 (39%), Gaps = 14/127 (11%) Query 17 GKNIIIWLPTGAGKTRAAAYV--AKRHLETVDGAK-----VVVLVNRVHLVTQHGEEFRR 69 G+++I TG+GKT A + K+ L+ K VV+ L Q ++ + Sbjct 110 GRDVIGIAETGSGKTL-AFGLPCLKKVLDLKTKQKSCRPLAVVISPTRELAMQIYDQLVK 168 Query 70 MLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLI 128 + V + G + L + +++ T L+ + + ++L + Sbjct 169 FAEKVDIQVACIFGGVKKDEQREAL-KSAAVVVATPGRLKD----LQNDGSLDLGRVKYL 223 Query 129 VVDECHH 135 V+DE Sbjct 224 VLDEADR 230 >sp|Q6C9P3|DBP3_YARLI ATP-dependent RNA helicase DBP3 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DBP3 PE=3 SV=1 Length=532 Score = 127 bits (318), Expect = 1e-29, Method: Composition-based stats. Identities = 41/193 (21%), Positives = 82/193 (42%), Gaps = 24/193 (12%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K L +L++ +++ + +IF ++ A + L ++ G G + Sbjct 353 KEGRLLDLLRQY--ANDDFKILIFALYKKEATRVENTLTRR--------------GYGVA 396 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + ++Q+ + + + +F+ G N+L+AT VA GLDIP+ +V+ V Sbjct 397 AIHGDLSQQQRTKALDEFKKGEKNILLATDVAARGLDIPNVKLVINLTFPLTVEDYVHRI 456 Query 470 GR-ARADQSVYAF-VATEGSRELKRELIN------EALETLMEQAVAAVQKMDQAEYQAK 521 GR RA ++ A + TE + L LIN + + + + +K + Y A Sbjct 457 GRTGRAGKTGQAITLFTEHEKHLSGALINVLRGADQPVPDELLKFGGHTKKKEHGAYGAF 516 Query 522 IRDLQQAALTKRA 534 +D+ K+ Sbjct 517 FKDVDMTKKAKKI 529 Score = 56.7 bits (135), Expect = 5e-07, Method: Composition-based stats. Identities = 56/334 (17%), Positives = 115/334 (34%), Gaps = 21/334 (6%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK---VVVLVNRVHLVTQHGEEFRRML 71 L GK+++ TG+GKT A A H+ + G K V+V+ L Q + + + Sbjct 159 LAGKDMVGVAETGSGKTFTFAVPALEHVLSTSGGKGVRVLVVSPTRELAMQIYDNIKELC 218 Query 72 D-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV 130 D + G + L R ++ T L + +E +L+ S +V+ Sbjct 219 DVVGLHAVCVYGGVPKEQQRSDLKRASFVI-ATPGRLCDLI----DEGSCDLSKVSYLVL 273 Query 131 DECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASK--LDGAINHVLQL 188 DE + I + Q + + T P ++ + ++ Sbjct 274 DEADRMLEKGFEEDIKKIIGSTRPTGRQTV--MFSATWPPEVRKLAEGFMKTPTKVMIGE 331 Query 189 CANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPE 248 L ++ ++ + + + +L + + D F L+ L + +E Sbjct 332 RDELAANKRIT---QSVEVLDPRAKEGRLLDLLRQYANDDFKILIFALYKKEATRVENTL 388 Query 249 LSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAA--- 305 R +G + + AL ++ L L V+ V L Sbjct 389 TRRGYGVAAIHGDLSQQQRTKALDEFKKGEKNILLATDVAARGLDIPNVKLVINLTFPLT 448 Query 306 LQDFYHREHVTKTQILCAERRLLALFDDRKNELA 339 ++D+ HR + +T + + LF + + L+ Sbjct 449 VEDYVHR--IGRTGRAGKTGQAITLFTEHEKHLS 480 >sp|A6RW56|RRP3_BOTFB ATP-dependent rRNA helicase rrp3 OS=Botryotinia fuckeliana (strain B05.10) OX=332648 GN=rrp3 PE=3 SV=1 Length=486 Score = 126 bits (316), Expect = 1e-29, Method: Composition-based stats. Identities = 50/206 (24%), Positives = 82/206 (40%), Gaps = 26/206 (13%) Query 346 PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 P K L +L S IIFTRT + + L+ +G Sbjct 283 PLIHKDTYLIYLLNEFAGQS----AIIFTRTVNETQRIAILLRT--------------LG 324 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465 G ++Q + + KF+ G+ +LVAT VA GLDIP +VV+ Y + + + Sbjct 325 FGAIPLHGQLSQSSRLGALNKFRAGSREILVATDVAARGLDIPSVDVVLNYDVPQDSKTY 384 Query 466 VQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIR 523 + GR ARA +S +A V T+ E I +E + + + K R Sbjct 385 IHRVGRTARAGKSGHAISVVTQYDLE-----IFMRIEAALGKKQVEYPTVKDEVMVFKPR 439 Query 524 DLQQAALTKRAAQAAQRENQRQQFPV 549 +++A R E++ ++ V Sbjct 440 -VEEAQRHARNEMKNLHEDRGKKGAV 464 Score = 67.1 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 49/305 (16%), Positives = 111/305 (36%), Gaps = 19/305 (6%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHL---VTQ 62 Q E I AL+G+++I TG+GKT A A + + L+ +VL L ++Q Sbjct 87 QRESIPLALQGRDLIGLAETGSGKTAAFALPILQALLDKPQPLFGLVLAPTRELAYQISQ 146 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 E ++ + V DM P++ L + +++ T L L + + L Sbjct 147 QFEALGSVIRVKCAVIVGGMDMVPQSI--ALGKKPHIIVATPGRLLDHLENTKG---FSL 201 Query 123 TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAI 182 +V+DE D + I+ + L++ + + +A+ + S ++ Sbjct 202 RSLKYLVMDEADRLL-DLDFGPILDKILKVLPRERRTYL----FSATISSKVESLQRASL 256 Query 183 NHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHD 242 L++ ++ + + +Q + P + + F + + + Sbjct 257 KDPLRV--SISSNKYQTVS---TLIQNYIFIPLIHKDTYLIYLLNEFAGQSAIIFTRTVN 311 Query 243 HLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDA 302 + + + +LS+++ L L + R + + D + +VD Sbjct 312 ETQRIAILLRTLGFGAIPLHGQLSQSSRLGALNKFRAGSREILVATDVAARGLDIPSVDV 371 Query 303 LAALQ 307 + Sbjct 372 VLNYD 376 >sp|Q8W4R3|RH30_ARATH DEAD-box ATP-dependent RNA helicase 30 OS=Arabidopsis thaliana OX=3702 GN=RH30 PE=1 SV=2 Length=591 Score = 127 bits (320), Expect = 1e-29, Method: Composition-based stats. Identities = 36/170 (21%), Positives = 61/170 (36%), Gaps = 19/170 (11%) Query 333 DRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQG 392 + + P K L +L++ S + +IF T++ + L+ Sbjct 379 KANQSINQVIEIVPTPEKYNRLLTLLKQLMDGS---KILIFVETKRGCDQVTRQLR---- 431 Query 393 LQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNV 452 + G + TQ ++ V+ +F+ G ++ AT VA GLD+ Sbjct 432 ----------MDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVAARGLDVKDIKC 481 Query 453 VVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALE 500 VV Y + GR RA AF T + + REL+ E Sbjct 482 VVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAKFARELVKILQE 531 Score = 61.0 bits (146), Expect = 2e-08, Method: Composition-based stats. Identities = 37/129 (29%), Positives = 53/129 (41%), Gaps = 11/129 (9%) Query 14 ALEGKNIIIWLPTGAGKTRAAAYVAKRH------LETVDGAKVVVLVNRVHLVTQHGEEF 67 AL+G+++I TG+GKT A A H L DG V++L L Q EE Sbjct 199 ALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEES 258 Query 68 RRM-LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS 126 R+ L T + G L R +++I T L L E +H L + Sbjct 259 RKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDML----ECQHTNLKRVT 314 Query 127 LIVVDECHH 135 +V+DE Sbjct 315 YLVLDEADR 323 >sp|Q1DP69|DBP2_COCIM ATP-dependent RNA helicase DBP2 OS=Coccidioides immitis (strain RS) OX=246410 GN=DBP2 PE=3 SV=2 Length=545 Score = 127 bits (318), Expect = 1e-29, Method: Composition-based stats. Identities = 60/365 (16%), Positives = 119/365 (33%), Gaps = 51/365 (14%) Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQY-NLCHRRSQD 227 +P + + V+ + T + C P + + QP + Sbjct 152 TPIQSQGWPMALSGRDVVGIAE---TGSGKTLTYCLPAIVHINAQPLLGPGDGPIVLVLA 208 Query 228 PFGDLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEAAALAGLQEQRVY----- 280 P +L ++ +I + + +G Q+ LS + R+ Sbjct 209 PTRELAVQIQAEITKFGKSSRIRNTCVYGGVPRGPQIRDLSRGVEVCIATPGRLIDMLEA 268 Query 281 -ALHLRRYNDALLIHDTVRAVDA---------------------LAALQDFYHREHVTKT 318 +LRR L++ + R +D +A R+ Sbjct 269 GKTNLRR-VTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTCMWSATWPKEVRQLAHDF 327 Query 319 QILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQ 378 + + + + + + + K + + L+R + +IFT T++ Sbjct 328 LHDYIQVYIGSQDLSANHRITQIVEIVSDFEKRDRMINHLERI-MDDKKSKILIFTGTKR 386 Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT 438 A + +L+Q G S Q ++ V+ +F+ G ++VAT Sbjct 387 VADDITRFLRQD--------------GWPALSIHGDKQQNERDWVLNEFKTGKSPIMVAT 432 Query 439 SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELIN 496 VA G+D+ V+ Y N V GR RA A + T + + R+L+N Sbjct 433 DVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITLFTTDNAKQARDLVN 492 Query 497 EALET 501 E+ Sbjct 493 ILTES 497 Score = 51.3 bits (121), Expect = 2e-05, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 49/129 (38%), Gaps = 11/129 (9%) Query 14 ALEGKNIIIWLPTGAGKTRA----AAYVA--KRHLETVDGAKVVVLVNRVHLVTQHGEEF 67 AL G++++ TG+GKT A + L DG V+VL L Q E Sbjct 162 ALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLGPGDGPIVLVLAPTRELAVQIQAEI 221 Query 68 RRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS 126 + R T + G + L+R ++ I T L L + + L + Sbjct 222 TKFGKSSRIRNTCVYGGVPRGPQIRDLSRGVEVCIATPGRLIDMLEAGKTN----LRRVT 277 Query 127 LIVVDECHH 135 +V+DE Sbjct 278 YLVLDEADR 286 >sp|Q4R5S7|DDX4_MACFA Probable ATP-dependent RNA helicase DDX4 OS=Macaca fascicularis OX=9541 GN=DDX4 PE=2 SV=1 Length=725 Score = 128 bits (322), Expect = 1e-29, Method: Composition-based stats. Identities = 52/296 (18%), Positives = 101/296 (34%), Gaps = 54/296 (18%) Query 255 TQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDA-LLIHDTVRAVDALAALQDFYHRE 313 Q V + A G + + L++ + R +D + ++ Sbjct 407 GHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEM---KK 463 Query 314 HVTKTQILCAERRLLALFDDRKNE----------------------------LAHLATHG 345 ++ + E+R +F E + Sbjct 464 LISCPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQV 523 Query 346 PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 + K E L +IL+ R ++F T++ A + +L Q++ Sbjct 524 GQFSKREKLVEILRNI----GDERTMVFVETKKKADFIATFLCQEK-------------- 565 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465 +S QR++++ + F+ G +LVATSVA GLDI + V+ + L + Sbjct 566 ISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEY 625 Query 466 VQARGR-ARADQSVYA--FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEY 518 V GR R + A F E L + L+ + L + A ++++ + Y Sbjct 626 VHRIGRTGRCGNTGRAISFFDLESDNHLAQPLV-KVLTDAQQDVPAWLEEIAFSTY 680 Score = 51.7 bits (122), Expect = 2e-05, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 56/166 (34%), Gaps = 16/166 (10%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRH----------LETVDGAKVVVLVNRVHLVTQHG 64 L G++++ TG+GKT A H + + + +++ LV Q Sbjct 324 LAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASCFKELQEPECIIVAPTRELVNQIY 383 Query 65 EEFRRM-LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELT 123 E R+ + G + + ++L T L + + + L Sbjct 384 LEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEK----IGLK 439 Query 124 VFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS 169 +V+DE D + M + + ++ Q L +A+ Sbjct 440 QIKYLVLDEADR-MLDMGFGPEMKKLISCPGMPSKEQRQTLMFSAT 484 >sp|Q54VT4|DDX47_DICDI Probable ATP-dependent RNA helicase ddx47 OS=Dictyostelium discoideum OX=44689 GN=ddx47 PE=3 SV=1 Length=546 Score = 127 bits (318), Expect = 2e-29, Method: Composition-based stats. Identities = 67/346 (19%), Positives = 125/346 (36%), Gaps = 49/346 (14%) Query 228 PFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR 285 P +L ++ DQ + + G Q + L++ + RV HL Sbjct 195 PTRELAYQIADQFNAIGSTIGVKTCVLVGGIDSMSQSLALAKKPHVVVGSPGRV-LHHLE 253 Query 286 RYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFD----DRKNELAHL 341 L +D L E V + + R LF + +L Sbjct 254 HTKGFNLRSIKYFIMDEADRLFSADFEEEVNNILKVIPKERNTYLFSATMTSKVAKLQRA 313 Query 342 ATHGPEN----PKLEMLEKILQRQFSSSNSPR---------------GIIFTRTRQSAHS 382 + P K + ++ +LQ+ + IIFT T S+ Sbjct 314 SLVNPVKVQVASKYQTVDTLLQQYLFVPFKYKDCYLAYILNELAGNLTIIFTSTCASSTK 373 Query 383 LLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAE 442 + + L+ +G G + M Q + + KF+ GT ++LVAT VA Sbjct 374 IAMMLRN--------------LGFGAIPINGDMDQGKRLASLNKFKQGTKSILVATDVAA 419 Query 443 EGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALE 500 GLDIP ++V+ Y + TN V GR ARA S A + T+ E + + +E Sbjct 420 RGLDIPSVDLVINYDVPTNSKEYVHRVGRTARAGNSGRAITIVTQYDVE-----MYQRIE 474 Query 501 TLMEQAVAAVQKMDQAE--YQAKIRDLQQAALTKRAAQAAQRENQR 544 ++++ + + ++ + ++++ + A + + + R Sbjct 475 FVLKKKLDSFPCQEETVLIFLERVQEAHRIATNELKDKNYSSSSDR 520 Score = 58.3 bits (139), Expect = 2e-07, Method: Composition-based stats. Identities = 60/389 (15%), Positives = 123/389 (32%), Gaps = 38/389 (10%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVV---LVNRVHLVTQH 63 Q E I AL+G++II TG+GKT AA+V + ++ + + L L Q Sbjct 146 QRESIPWALKGRDIIGLAQTGSGKT--AAFVIPVLQKLLEAPQGLFCLALAPTRELAYQI 203 Query 64 GEEFRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 ++F + L G + + LA+ +++ + + L + L Sbjct 204 ADQFNAIGSTIGVKTCVLVGGIDSMSQSLALAKKPHVVVGSPGRVLHHLEHTKG---FNL 260 Query 123 TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAI 182 ++DE + + + +R L +A+ + A ++ Sbjct 261 RSIKYFIMDEADRLFSADFEEEVNNILKVIPKERNTYL-----FSATMTSKVAKLQRASL 315 Query 183 NHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHD 242 + +++ Q LQ++ P K + + L + Sbjct 316 VNPVKV------QVASKYQTVDTLLQQYLFVPFKYKDCYLAYILNELAGNLTIIFTSTCA 369 Query 243 -HLEMPELSRKFGTQMY-----EQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDT 296 ++ + R G Q +L+ + + A + + D Sbjct 370 SSTKIAMMLRNLGFGAIPINGDMDQGKRLASLNKFKQGTKSILVATDVAARGLDIPSVDL 429 Query 297 VRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEK 356 V D +++ HR V +T R + + E+ ++E + K Sbjct 430 VINYDVPTNSKEYVHR--VGRTARAGNSGRAITIVTQYDVEM---------YQRIEFVLK 478 Query 357 ILQRQFSSSNSPRGIIFTRTRQSAHSLLL 385 F +IF Q AH + Sbjct 479 KKLDSFPCQEET-VLIFLERVQEAHRIAT 506 >sp|Q9C718|RH20_ARATH DEAD-box ATP-dependent RNA helicase 20 OS=Arabidopsis thaliana OX=3702 GN=RH20 PE=2 SV=1 Length=501 Score = 126 bits (316), Expect = 2e-29, Method: Composition-based stats. Identities = 56/316 (18%), Positives = 104/316 (33%), Gaps = 57/316 (18%) Query 228 PFGDLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEAAALAGLQEQRVY----- 280 P +L ++ + ++ +G QV L + + R+ Sbjct 180 PTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMMES 239 Query 281 -ALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELA 339 +LRR L++ + R +D D R+ V+ + A + +L+ Sbjct 240 NNTNLRR-VTYLVLDEADRMLDMG---FDPQIRKIVSHIRPDRQTLYWSATWPKEVEQLS 295 Query 340 HLATHGP------------------------ENPKLEMLEKILQRQFSSSNSPRGIIFTR 375 + P E+ K L K+L+ S R ++F Sbjct 296 KKFLYNPYKVIIGSSDLKANRAIRQIVDVISESQKYNKLVKLLEDIMDGS---RILVFLD 352 Query 376 TRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLL 435 T++ + L+ + G S +Q ++ V+ +F+ G ++ Sbjct 353 TKKGCDQITRQLR--------------MDGWPALSIHGDKSQAERDWVLSEFRSGKSPIM 398 Query 436 VATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR---GRARADQSVYAFVATEGSRELKR 492 AT VA GLD+ V+ Y + V GRA A + Y F +R + Sbjct 399 TATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVANAR-FAK 457 Query 493 ELINEALETLMEQAVA 508 EL N E + + Sbjct 458 ELTNILQEAGQKVSPE 473 Score = 57.1 bits (136), Expect = 3e-07, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 50/129 (39%), Gaps = 11/129 (9%) Query 14 ALEGKNIIIWLPTGAGKTRAAAYVAKRH------LETVDGAKVVVLVNRVHLVTQ-HGEE 66 A++G+++I TG+GKT + A H L DG V+VL L Q E Sbjct 133 AMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEA 192 Query 67 FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS 126 + + T + G + L + +++I T L + S L + Sbjct 193 SKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMMESNNTN----LRRVT 248 Query 127 LIVVDECHH 135 +V+DE Sbjct 249 YLVLDEADR 257 >sp|A1C6C4|DBP2_ASPCL ATP-dependent RNA helicase dbp2 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=dbp2 PE=3 SV=1 Length=549 Score = 127 bits (318), Expect = 2e-29, Method: Composition-based stats. Identities = 39/207 (19%), Positives = 81/207 (39%), Gaps = 19/207 (9%) Query 297 VRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEK 356 R +A R+ + + + ++ + + + + K + + K Sbjct 303 DRQTCMWSATWPKEVRQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIK 362 Query 357 ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT 416 L++ ++ + +IFT T++ A + +L+Q G S Sbjct 363 HLEKIMEDRSN-KILIFTGTKRIADEITRFLRQD--------------GWPALSIHGDKQ 407 Query 417 QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR---GRAR 473 Q+++ V+ +F+ G ++VAT VA G+D+ V+ Y N + GRA Sbjct 408 QQERDWVLNEFKAGKSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYIHRIGRTGRAG 467 Query 474 ADQSVYAFVATEGSRELKRELINEALE 500 A + F T+ S++ R+L+ E Sbjct 468 AKGTAITFFTTDNSKQ-ARDLVTILTE 493 Score = 52.1 bits (123), Expect = 1e-05, Method: Composition-based stats. Identities = 32/129 (25%), Positives = 48/129 (37%), Gaps = 11/129 (9%) Query 14 ALEGKNIIIWLPTGAGKTRA----AAYVA--KRHLETVDGAKVVVLVNRVHLVTQHGEEF 67 AL G++++ TG+GKT A + L DG V+VL L Q E Sbjct 159 ALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQTEI 218 Query 68 RRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS 126 + R T + G + L+R ++ I T L L E L + Sbjct 219 TKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDML----EAGRTNLRRVT 274 Query 127 LIVVDECHH 135 +V+DE Sbjct 275 YLVLDEADR 283 >sp|Q9NQI0|DDX4_HUMAN Probable ATP-dependent RNA helicase DDX4 OS=Homo sapiens OX=9606 GN=DDX4 PE=1 SV=2 Length=724 Score = 128 bits (321), Expect = 2e-29, Method: Composition-based stats. Identities = 52/296 (18%), Positives = 101/296 (34%), Gaps = 54/296 (18%) Query 255 TQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDA-LLIHDTVRAVDALAALQDFYHRE 313 Q V + A G + + L++ + R +D + ++ Sbjct 406 GHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEM---KK 462 Query 314 HVTKTQILCAERRLLALFDDRKNE----------------------------LAHLATHG 345 ++ + E+R +F E + Sbjct 463 LISCPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQV 522 Query 346 PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 + K E L +IL+ R ++F T++ A + +L Q++ Sbjct 523 GQFSKREKLVEILRNI----GDERTMVFVETKKKADFIATFLCQEK-------------- 564 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465 +S QR++++ + F+ G +LVATSVA GLDI + V+ + L + Sbjct 565 ISTTSIHGDREQREREQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEY 624 Query 466 VQARGR-ARADQSVYA--FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEY 518 V GR R + A F E L + L+ + L + A ++++ + Y Sbjct 625 VHRIGRTGRCGNTGRAISFFDLESDNHLAQPLV-KVLTDAQQDVPAWLEEIAFSTY 679 Score = 51.7 bits (122), Expect = 2e-05, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 56/166 (34%), Gaps = 16/166 (10%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRH----------LETVDGAKVVVLVNRVHLVTQHG 64 L G++++ TG+GKT A H + + + +++ LV Q Sbjct 323 LAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIY 382 Query 65 EEFRRM-LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELT 123 E R+ + G + + ++L T L + + + L Sbjct 383 LEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEK----IGLK 438 Query 124 VFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS 169 +V+DE D + M + + ++ Q L +A+ Sbjct 439 QIKYLVLDEADR-MLDMGFGPEMKKLISCPGMPSKEQRQTLMFSAT 483 >sp|A2QC74|DBP2_ASPNC ATP-dependent RNA helicase dbp2 OS=Aspergillus niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) OX=425011 GN=dbp2 PE=3 SV=1 Length=565 Score = 127 bits (318), Expect = 2e-29, Method: Composition-based stats. Identities = 40/207 (19%), Positives = 81/207 (39%), Gaps = 19/207 (9%) Query 297 VRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEK 356 R +A R+ + + + ++ + + + + K + + K Sbjct 315 DRQTCMWSATWPKEVRQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIK 374 Query 357 ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT 416 L++ + + + +IFT T++ A + +L+Q G S Sbjct 375 HLEKIME-NRANKCLIFTGTKRIADEITRFLRQD--------------GWPALSIHGDKQ 419 Query 417 QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR---GRAR 473 Q+++ V+ +F+ G ++VAT VA G+D+ V+ Y N V GRA Sbjct 420 QQERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAG 479 Query 474 ADQSVYAFVATEGSRELKRELINEALE 500 A + F T+ S++ R+L+ E Sbjct 480 AKGTAITFFTTDNSKQ-ARDLVTILTE 505 Score = 53.3 bits (126), Expect = 6e-06, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 48/129 (37%), Gaps = 11/129 (9%) Query 14 ALEGKNIIIWLPTGAGKTRA----AAYVA--KRHLETVDGAKVVVLVNRVHLVTQHGEEF 67 AL G++++ TG+GKT A + L DG V++L L Q E Sbjct 171 ALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLILAPTRELAVQIQAEI 230 Query 68 RRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS 126 + R T + G + L+R ++ I T L L E L + Sbjct 231 SKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDML----EAGRTNLRRVT 286 Query 127 LIVVDECHH 135 +V+DE Sbjct 287 YLVLDEADR 295 >sp|Q6FQZ0|DBP8_CANGA ATP-dependent RNA helicase DBP8 OS=Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DBP8 PE=3 SV=1 Length=437 Score = 125 bits (313), Expect = 2e-29, Method: Composition-based stats. Identities = 50/212 (24%), Positives = 92/212 (43%), Gaps = 26/212 (12%) Query 346 PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 PE+ K L ++L S + IIF +A L L+ +D+R L Sbjct 242 PEHVKEAYLYQLLTC--ESYANSTAIIFVNRTTAAEVLRRTLK------ALDVRVASL-- 291 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465 + M Q+++ + +F+ +L+AT VA GLDIP +V+ Y + ++ + Sbjct 292 ------HSQMPQQERTNSMHRFRANAARVLIATDVASRGLDIPTVELVINYDIPSDPDTF 345 Query 466 VQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD 524 + GR ARA + A R++ R +E + + + + D+ A IR Sbjct 346 IHRSGRTARAGRKGDAISFITQ-RDVSR------IEAIEARINMKMTECDKVHDTAVIRK 398 Query 525 -LQQAALTKRAA-QAAQRENQRQQFPVEHVQL 554 L + + KR A A ++EN ++ ++ + Sbjct 399 ALTKVSKAKREALMAMEKENFGERRKLQKRKT 430 Score = 49.4 bits (116), Expect = 8e-05, Method: Composition-based stats. Identities = 26/124 (21%), Positives = 45/124 (36%), Gaps = 8/124 (6%) Query 15 LEGKNIIIWLPTGAGKTRAAAY--VAKRHLETVDGAKVVVLVNRVHLVTQ---HGEEFRR 69 L+G++ I TG+GKT A + + E G +VL L Q Sbjct 44 LKGRDCIGGAKTGSGKT-IAFAGPMLTQWSEDPTGMFGIVLTPTRELAMQIAEQFTALGS 102 Query 70 MLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIV 129 ++ R + + +A L R +I T L + + ++ L +V Sbjct 103 YMNIRVALVVGGESIVDQAL--QLQRKPHFIIATPGRLAHHILNSGDDTVGGLKRVKYLV 160 Query 130 VDEC 133 +DE Sbjct 161 LDEA 164 >sp|Q8H136|RH14_ARATH DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana OX=3702 GN=RH14 PE=1 SV=2 Length=619 Score = 127 bits (319), Expect = 2e-29, Method: Composition-based stats. Identities = 42/166 (25%), Positives = 68/166 (41%), Gaps = 21/166 (13%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K LE+IL+ Q + IIF T++ L L +Q G + Sbjct 389 KQRRLEQILRSQ---EPGSKVIIFCSTKRMCDQLTRNLTRQ---------------FGAA 430 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + +Q ++ V+ +F+ G +LVAT VA GLD+ VV Y V Sbjct 431 AIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRI 490 Query 470 GR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKM 513 GR RA + AF + + +LI + LE ++ +++M Sbjct 491 GRTGRAGATGQAFTFFGDQDSKHASDLI-KILEGANQRVPPQIREM 535 Score = 62.1 bits (149), Expect = 1e-08, Method: Composition-based stats. Identities = 66/336 (20%), Positives = 101/336 (30%), Gaps = 27/336 (8%) Query 14 ALEGKNIIIWLPTGAGKT-------RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ-HGE 65 A++G++I+ TG+GKT + ++VL L TQ E Sbjct 192 AMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPT--ILVLSPTRELATQIQEE 249 Query 66 EFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF 125 + R + T L G L R D+++ T L L E + L Sbjct 250 AVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDIL----EMRRISLRQI 305 Query 126 SLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS-PGTGGASKLDGAINH 184 S +V+DE I E+ +R Q L TA+ P D +N Sbjct 306 SYLVLDEADRMLDMGFEPQIRKIVKEIPTKR-----QTLMYTATWPKGVRKIAADLLVNP 360 Query 185 VLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHL 244 N+D Q E KQ L G + Sbjct 361 AQVNIGNVDELV---ANKSITQHIEVVAPMEKQRRLEQILRSQEPGSKVIIFCSTKRMCD 417 Query 245 EMP-ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV--- 300 ++ L+R+FG + L + R L L +RAV Sbjct 418 QLTRNLTRQFGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNY 477 Query 301 DALAALQDFYHREHVTKTQILCAERRLLALFDDRKN 336 D ++D+ HR T + D K+ Sbjct 478 DFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKH 513 >sp|P34580|DDX47_CAEEL Putative ATP-dependent RNA helicase T26G10.1 OS=Caenorhabditis elegans OX=6239 GN=T26G10.1 PE=3 SV=1 Length=489 Score = 126 bits (315), Expect = 2e-29, Method: Composition-based stats. Identities = 46/234 (20%), Positives = 84/234 (36%), Gaps = 26/234 (11%) Query 313 EHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGII 372 + + + R ++ + L P K L +L +S I+ Sbjct 233 SKLERASLRDPARVSVSSRYKTVDNLKQHYIFVPNKYKETYLVYLLNEHAGNS----AIV 288 Query 373 FTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTL 432 F T + + + L+Q +G M+Q + + KF+ Sbjct 289 FCATCATTMQIAVMLRQ--------------LGMQAVPLHGQMSQEKRLGSLNKFKSKAR 334 Query 433 NLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSREL 490 +LV T VA GLDIPH ++V+ Y + + V GR ARA +S A V T+ E Sbjct 335 EILVCTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGIAITVVTQYDVE- 393 Query 491 KRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQR 544 + +E + + + + ++ + Q+A R E ++ Sbjct 394 ----AYQKIEANLGKKLDEYKCVENEVMV-LVERTQEATENARIEMKEMDEKKK 442 Score = 59.0 bits (141), Expect = 8e-08, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 50/133 (38%), Gaps = 9/133 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT-RAAAYVAKRHLETVDGAKVVVLVNRVHLVT---Q 62 Q + AL+GK++I TG+GKT A V + L+ +VL L Q Sbjct 71 QQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQSLLDHPQAFFCLVLTPTRELAFQIGQ 130 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 E + V DM +A LAR +++ T L L + + L Sbjct 131 QFEALGSGIGLIAAVIVGGVDMAAQAM--ALARRPHIIVATPGRLVDHLENTKG---FNL 185 Query 123 TVFSLIVVDECHH 135 +++DE Sbjct 186 KALKFLIMDEADR 198 >sp|Q8L7S8|RH3_ARATH DEAD-box ATP-dependent RNA helicase 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RH3 PE=1 SV=2 Length=748 Score = 127 bits (320), Expect = 2e-29, Method: Composition-based stats. Identities = 62/335 (19%), Positives = 127/335 (38%), Gaps = 37/335 (11%) Query 206 QLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKL 265 +L + ++ K+ G + +++ + + E + +KL Sbjct 191 ELAKQVEKEIKESAPYLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIEGRSLKL 250 Query 266 SEAAALAGLQEQRVYALHLRRYNDALLIH-DTVRAVDALAALQDFYHREHVTKTQILCAE 324 E L + ++ A+ +++L + T R +A + ++ K Sbjct 251 GEVEYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDNPLN 310 Query 325 RRLLALFDDRKNE-LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSL 383 L+ D++ E + A K +L ++ + + I+FT+T++ A + Sbjct 311 IDLVGDQDEKLAEGIKLYAIATTSTSKRTILSDLITVY---AKGGKTIVFTQTKRDADEV 367 Query 384 LLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEE 443 L L I + L G ++Q ++ + F+ G +LVAT VA Sbjct 368 SLALSN-------SIATEALHG--------DISQHQRERTLNAFRQGKFTVLVATDVASR 412 Query 444 GLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGS-----RELKREL--- 494 GLDIP+ ++V+ Y L + + V GR RA + A + S R L+R++ Sbjct 413 GLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLERDVGCH 472 Query 495 --------INEALETLMEQAVAAVQKMDQAEYQAK 521 + + LE+ +Q VA + + + Sbjct 473 FEFISPPTVGDLLESSADQVVATLNGVHPDSIKFF 507 Score = 55.6 bits (132), Expect = 1e-06, Method: Composition-based stats. Identities = 34/138 (25%), Positives = 54/138 (39%), Gaps = 16/138 (12%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLET------VDGA----KVVVLVN 55 Q V++PAL+G++II TG GKT A + KR E + K +VL Sbjct 129 QRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAP 188 Query 56 RVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE 115 L Q +E + TV G + L R D+++ T + + Sbjct 189 TRELAKQVEKEIKESAPYLSTVCVYGG-VSYTIQQSALTRGVDVVVGTPGRIIDLIEGRS 247 Query 116 EEEHVELTVFSLIVVDEC 133 ++L +V+DE Sbjct 248 ----LKLGEVEYLVLDEA 261 >sp|Q5APT8|DBP3_CANAL ATP-dependent RNA helicase DBP3 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DBP3 PE=3 SV=1 Length=564 Score = 126 bits (317), Expect = 3e-29, Method: Composition-based stats. Identities = 43/213 (20%), Positives = 82/213 (38%), Gaps = 25/213 (12%) Query 333 DRKNELAHLATHGPENPKLEMLEKILQRQ-FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQ 391 + + + K + L ++L++ + S+ + +IF ++ A + +L++ + Sbjct 365 SANKRITQVVEVINKFDKEKKLIQLLRKYNANESSDNKILIFALYKKEASRIENFLKRNR 424 Query 392 GLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN 451 ++ ++Q+ + + F+ G NLL+AT VA GLDIP+ Sbjct 425 --------------FSVAAIHGDLSQQQRTAALSAFKSGQSNLLLATDVAARGLDIPNVK 470 Query 452 VVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELIN-------EALETL 502 VV+ V GR RA A + TE + L L N E L Sbjct 471 VVINLTFPLTIEDYVHRIGRTGRAGAKGTAHTLFTEDEKHLSGALCNILRGANQPVPEEL 530 Query 503 MEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAA 535 ++ +K + Y A +D+ K+ Sbjct 531 LKFGGHT-KKKAHSVYGAFYKDVDMTKTAKKIK 562 Score = 50.6 bits (119), Expect = 4e-05, Method: Composition-based stats. Identities = 54/336 (16%), Positives = 104/336 (31%), Gaps = 22/336 (7%) Query 15 LEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLV--NRVHLVTQHGEE-FRRM 70 L GK++I TG+GKT A + T + + VL L Q + Sbjct 188 LSGKDVIGVAETGSGKTFAFGVPAINNIITTGNTKTLSVLCISPTRELALQIYDNLIELT 247 Query 71 LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV 130 D + G + + ++++ T L + + L + +V+ Sbjct 248 ADSGVNCVAVYGGVSKD-DQIRKIKTANVVVATPGRLVDLIND----GAINLGKVNYLVL 302 Query 131 DECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS-PGTGGASKLDGAINHVLQLC 189 DE + I + Q L TA+ P + + V Sbjct 303 DEADRMLEKGFEEDIKTIISNTSNSERQT----LMFTATWPKEVRELANNFMNSPVKVTV 358 Query 190 ANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGD---LLKKLMDQIHDHLEM 246 + D ++ + K L + + + D L+ L + +E Sbjct 359 GDRDELSANKRITQVVEVINKFDKEKKLIQLLRKYNANESSDNKILIFALYKKEASRIEN 418 Query 247 PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAA- 305 +F + + AAL+ + + L L V+ V L Sbjct 419 FLKRNRFSVAAIHGDLSQQQRTAALSAFKSGQSNLLLATDVAARGLDIPNVKVVINLTFP 478 Query 306 --LQDFYHREHVTKTQILCAERRLLALFDDRKNELA 339 ++D+ HR + +T A+ LF + + L+ Sbjct 479 LTIEDYVHR--IGRTGRAGAKGTAHTLFTEDEKHLS 512 >sp|P24782|DBP2_SCHPO ATP-dependent RNA helicase dbp2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=dbp2 PE=2 SV=2 Length=550 Score = 126 bits (316), Expect = 3e-29, Method: Composition-based stats. Identities = 64/375 (17%), Positives = 126/375 (34%), Gaps = 54/375 (14%) Query 164 LGLTA-SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQY-NLC 221 LG A +P A + + ++ + A T + C P + + QP + Sbjct 140 LGFEAPTPIQQQAWPMAMSGRDMVGISA---TGSGKTLSYCLPAIVHINAQPLLSPGDGP 196 Query 222 HRRSQDPFGDLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEAAALAGLQEQRV 279 P +L ++ + + + +G Q+ L + R+ Sbjct 197 IVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVEICIATPGRL 256 Query 280 ------YALHLRRYNDALLIHDTVRAVD---------ALAALQDFYHREHVTKTQILCAE 324 +LRR L++ + R +D + ++ + T + Sbjct 257 LDMLDSNKTNLRR-VTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTVMFSATWPKEVQ 315 Query 325 R----RLLALFDDRKNELAHLATHG--------PENPKLEMLEKILQRQFSSSNSPRGII 372 R L L A+H K L K ++ ++ + +I Sbjct 316 RLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRARLGKDIEEVLKDRDN-KVLI 374 Query 373 FTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTL 432 FT T++ A + +L+Q G + Q ++ V+ +F+ G Sbjct 375 FTGTKRVADDITRFLRQD--------------GWPALAIHGDKAQDERDWVLNEFRTGKS 420 Query 433 NLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR---GRARADQSVYAFVATEGSRE 489 ++VAT VA G+D+ V Y N V GRA A + Y + ++ +++ Sbjct 421 PIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNAKQ 480 Query 490 LKRELINEALETLME 504 REL++ E + Sbjct 481 -ARELVSILSEAKQD 494 Score = 49.8 bits (117), Expect = 7e-05, Method: Composition-based stats. Identities = 32/136 (24%), Positives = 52/136 (38%), Gaps = 11/136 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA----AAYVA--KRHLETVDGAKVVVLVNRVHLV 60 Q + A+ G++++ TG+GKT + A + L DG V+VL L Sbjct 149 QQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELA 208 Query 61 TQHGEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 Q +E + R T + G + L R ++ I T L L S + Sbjct 209 VQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVEICIATPGRLLDMLDSNKTN-- 266 Query 120 VELTVFSLIVVDECHH 135 L + +V+DE Sbjct 267 --LRRVTYLVLDEADR 280 >sp|Q6BY27|DBP2_DEBHA ATP-dependent RNA helicase DBP2 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DBP2 PE=3 SV=1 Length=536 Score = 126 bits (316), Expect = 3e-29, Method: Composition-based stats. Identities = 60/365 (16%), Positives = 119/365 (33%), Gaps = 55/365 (15%) Query 194 TWCIMSPQNCCPQLQEHSQQPCKQY-NLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRK 252 T + C P + + QP + P +L ++ + + Sbjct 151 TGSGKTLSYCLPSIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECSKFGSSSRIRNT 210 Query 253 --FGTQMYEQQVVKLSEAAALAGLQEQRVY------ALHLRRYNDALLIHDTVRAVDALA 304 +G QQ+ L+ + R+ +LRR L++ + R +D Sbjct 211 CVYGGAPKGQQIRDLARGVEICIATPGRLIDMLETGKTNLRR-VTYLVLDEADRMLDMGF 269 Query 305 ALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGP------------------ 346 Q R+ V + + A + L + P Sbjct 270 EPQ---IRKIVDQIRPDRQTLMWSATWPKEVQALTRDYLNDPIQVTVGSLELAASHTITQ 326 Query 347 ------ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRA 400 E K + L K L ++ + +IF T+++ + +L+ Sbjct 327 LVEVVTEFEKRDRLIKHL-ETATADPEAKCLIFASTKRTCDEITNYLRAD---------- 375 Query 401 QLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT 460 G + Q ++ V+++F+ G ++VAT VA G+D+ + V+ + Sbjct 376 ----GWPALAIHGDKQQGERDWVLKEFKTGKSPIMVATDVAARGIDVKGISYVINLDMPG 431 Query 461 NEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEY 518 N V GR RA + A T+ + +L +L E + + D+ + Sbjct 432 NIEDYVHRIGRTGRAGSTGTAVSFFTDNNSKLGGDLCKIMREANQ-TIPPELMRFDRRSF 490 Query 519 QAKIR 523 + IR Sbjct 491 GSHIR 495 Score = 56.0 bits (133), Expect = 7e-07, Method: Composition-based stats. Identities = 63/347 (18%), Positives = 119/347 (34%), Gaps = 44/347 (13%) Query 14 ALEGKNIIIWLPTGAGKTR------AAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEF 67 AL G++++ TG+GKT A+ L DG V+VL L Q +E Sbjct 139 ALSGRDMVGIASTGSGKTLSYCLPSIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQEC 198 Query 68 RRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS 126 + R T + G LAR ++ I T L L E L + Sbjct 199 SKFGSSSRIRNTCVYGGAPKGQQIRDLARGVEICIATPGRLIDML----ETGKTNLRRVT 254 Query 127 LIVVDECHHTHKDTVYNVIMSQYLELKLQR----AQPLPQVLGLTAS-PGTGGASKLDGA 181 +V+DE + ++ E ++++ +P Q L +A+ P A D Sbjct 255 YLVLDEA---------DRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVQALTRDYL 305 Query 182 INHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIH 241 + + +L+ + + E ++ +L + L+ + Sbjct 306 NDPIQVTVGSLELAASHTITQLVEVVTEFEKRDRLIKHLETATADPEAKCLIFASTKRTC 365 Query 242 DHLEMPELSRKFGT----------QMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDAL 291 D E+ R G Q V+K + + V A + + Sbjct 366 D--EITNYLRADGWPALAIHGDKQQGERDWVLKEFKTGKSPIMVATDVAARGIDVKGISY 423 Query 292 LIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNEL 338 +I+ +D ++D+ HR + +T + ++ F D ++L Sbjct 424 VIN-----LDMPGNIEDYVHR--IGRTGRAGSTGTAVSFFTDNNSKL 463 >sp|Q9LYJ9|RH46_ARATH DEAD-box ATP-dependent RNA helicase 46 OS=Arabidopsis thaliana OX=3702 GN=RH46 PE=2 SV=2 Length=645 Score = 127 bits (318), Expect = 3e-29, Method: Composition-based stats. Identities = 42/166 (25%), Positives = 69/166 (42%), Gaps = 21/166 (13%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K LE+IL+ Q + IIF T++ L L + G + Sbjct 392 KHSRLEQILRSQ---EPGSKIIIFCSTKRMCDQLARNLTRT---------------FGAA 433 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + +Q ++ +V+ +F+ G +LVAT VA GLD+ VVV Y V Sbjct 434 AIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYDFPNGVEDYVHRI 493 Query 470 GR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKM 513 GR RA + A+ + + +LI + LE ++ V++M Sbjct 494 GRTGRAGATGLAYTFFGDQDAKHASDLI-KILEGANQKVPPQVREM 538 Score = 61.4 bits (147), Expect = 2e-08, Method: Composition-based stats. Identities = 60/350 (17%), Positives = 103/350 (29%), Gaps = 25/350 (7%) Query 14 ALEGKNIIIWLPTGAGKT-------RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ-HGE 65 A++ ++I+ TG+GKT ++VL L TQ E Sbjct 195 AMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPT--ILVLSPTRELATQIQVE 252 Query 66 EFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF 125 + + + L G + R D+++ T L L + L Sbjct 253 ALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGRLNDILEMKR----ISLHQV 308 Query 126 SLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS-PGTGGASKLDGAINH 184 S +V+DE I E+ +R Q L TA+ P D +N Sbjct 309 SYLVLDEADRMLDMGFEPQIRKIVNEVPTKR-----QTLMYTATWPKEVRKIAADLLVNP 363 Query 185 VLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHL 244 N+D ++ ++ + + RSQ+P ++ + Sbjct 364 AQVNIGNVDELVANKSITQTIEVLAPMEKHSRLEQI--LRSQEPGSKIIIFCSTKRMCDQ 421 Query 245 EMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV---D 301 L+R FG + L + R L L +R V D Sbjct 422 LARNLTRTFGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYD 481 Query 302 ALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKL 351 ++D+ HR T D K+ + N K+ Sbjct 482 FPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASDLIKILEGANQKV 531 >sp|Q5QMN3|RH20_ORYSJ DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0197200 PE=3 SV=2 Length=494 Score = 125 bits (314), Expect = 3e-29, Method: Composition-based stats. Identities = 54/289 (19%), Positives = 96/289 (33%), Gaps = 55/289 (19%) Query 253 FGTQMYEQQVVKLSEAAALAGLQEQRVYA------LHLRRYNDALLIHDTVRAVDALAAL 306 +G QV L + + R+ +LRR L++ + R +D Sbjct 199 YGGVPKGPQVRDLQKGVEIVIATPGRLIDMIESHHTNLRR-VTYLVLDEADRMLDMGFEP 257 Query 307 QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGP-------------------- 346 Q ++ V++ + A + +LA P Sbjct 258 Q---IKKIVSQIRPDRQTLYWSATWPKEVEQLARNFLFDPYKVIIGSEELKANHAISQHV 314 Query 347 ----ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL 402 E+ K L +L+ S R +IF T++ + L+ Sbjct 315 EILSESQKYNKLVNLLEDIMDGS---RILIFMDTKKGCDQITRQLR-------------- 357 Query 403 LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE 462 + G S +Q ++ V+ +F+ G ++ AT VA GLD+ V+ Y + Sbjct 358 MDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSL 417 Query 463 ISMVQAR---GRARADQSVYAFVATEGSRELKRELINEALETLMEQAVA 508 V GRA A + Y F +R ++LIN E + + Sbjct 418 EDYVHRIGRTGRAGAKGTAYTFFTAANAR-FAKDLINILEEAGQKVSPE 465 Score = 57.5 bits (137), Expect = 3e-07, Method: Composition-based stats. Identities = 33/129 (26%), Positives = 50/129 (39%), Gaps = 11/129 (9%) Query 14 ALEGKNIIIWLPTGAGKTRAAAYVAKRH------LETVDGAKVVVLVNRVHLVTQ-HGEE 66 AL G+++I TG+GKT A A H L DG V+VL L Q E Sbjct 125 ALRGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILAPGDGPIVLVLAPTRELAVQIQQEA 184 Query 67 FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS 126 + + T + G + L + +++I T L + E H L + Sbjct 185 TKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMI----ESHHTNLRRVT 240 Query 127 LIVVDECHH 135 +V+DE Sbjct 241 YLVLDEADR 249 >sp|Q814I2|DBPA_BACCR ATP-dependent RNA helicase DbpA OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711) OX=226900 GN=dbpA PE=2 SV=1 Length=481 Score = 125 bits (313), Expect = 3e-29, Method: Composition-based stats. Identities = 71/416 (17%), Positives = 137/416 (33%), Gaps = 35/416 (8%) Query 165 GLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRR 224 G TAS G ++ N L + + + K+ Sbjct 53 GKTASFGIPLCEMVEWEENKPQALVLTPTRELAVQVKEDITNIGRF-----KRIKAAAVY 107 Query 225 SQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHL 284 + PF +L + H + P E+ + L L + + + Sbjct 108 GKSPFARQKLELKQKTHIVVGTPGRV----LDHIEKGTLSLECLKYLVIDEADEMLNMGF 163 Query 285 RRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATH 344 +A++ + + L + E +++T + + +++ H Sbjct 164 IDQVEAIIDELPTKRMTMLFSATLPEDVEKLSRTYMNSPTHIEIKAAGITTDKIEHTLFE 223 Query 345 GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI 404 E+ KL +L+ + + N IIF RT+++ + L++ + + Sbjct 224 VIEDEKLSLLKDVT----TIENPDSCIIFCRTQENVDHVYRQLKR------ANYPCDKIH 273 Query 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 G M Q D+ EV+ F+ G LVAT VA G+DI + V+ Y + + S Sbjct 274 G--------GMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPLEKES 325 Query 465 MVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIR 523 V GR RA S A E I E + + +A+ ++ E A Sbjct 326 YVHRTGRTGRAGNSGKAITFITPYENRFLEEIEEYIGFEIPKAIGPSKEEVMKEKAAFEE 385 Query 524 DLQQAALTKRAAQAAQRE-------NQRQQFPVEHVQLLCINCMVAVGHGSDLRKV 572 L + K+ A + N ++ + V + + D+ + Sbjct 386 KLHAKPIIKKDKNADINKGIMKLYFNGGKKKKIRAVDFVGTIAKIKGVTAEDIGII 441 Score = 54.8 bits (130), Expect = 2e-06, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 51/129 (40%), Gaps = 6/129 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE 65 Q EVI AL+ K++++ TG+GKT + +E + + +VL L Q E Sbjct 31 QGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENKPQALVLTPTRELAVQVKE 90 Query 66 EFRRMLDGRW-TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 + + + + G L + +++ T + + E+ + L Sbjct 91 DITNIGRFKRIKAAAVYGKSPFARQKLELKQKTHIVVGTPGRVLDHI----EKGTLSLEC 146 Query 125 FSLIVVDEC 133 +V+DE Sbjct 147 LKYLVIDEA 155 >sp|Q7S5R1|DBP3_NEUCR ATP-dependent RNA helicase dbp-3 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=dbp-3 PE=3 SV=1 Length=614 Score = 126 bits (317), Expect = 3e-29, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 77/223 (35%), Gaps = 24/223 (11%) Query 321 LCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQR-QFSSSNSPRGIIFTRTRQS 379 E + P K L ++L+ Q S R ++F ++ Sbjct 404 GDGEGNGNIELQANSRIEQKVEVVDPRG-KEFRLYELLKEAQKGSQKDDRILVFCLYKKE 462 Query 380 AHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATS 439 A + +L ++ G +S + Q + ++ F+ GT +LVAT Sbjct 463 AVRVEQFLSRK--------------GIKVASIHGDLRQDQRTRSLEAFKSGTTTVLVATD 508 Query 440 VAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELIN- 496 VA GLDIP +V+ V GR RA + A + TE + L+N Sbjct 509 VAARGLDIPEVKLVINVTFPLTIEDYVHRIGRTGRAGKLGKAITLFTEHDKAHSGSLVNI 568 Query 497 -----EALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRA 534 + + + + V+K Y + +D+ + Sbjct 569 LRAAKQPVPEELLKFGTTVKKKAHDAYGSFYKDIDPNKKATKI 611 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 47/136 (35%), Gaps = 18/136 (13%) Query 14 ALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK-----------VVVLVNRVHLVTQ 62 +L G+++I TG+GKT A + L + K V++ L Q Sbjct 213 SLSGRDVIGIAETGSGKTMAFSLPCVESLASRPKPKFNSRDRTAHPRAVIVSPTRELAMQ 272 Query 63 HGEEFRRM--LDGRWTVTTLSG-DMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 + L G V G D + + D++ T L+ L+ E Sbjct 273 THAALSGLASLVGLSAVCIFGGSDKNEQRNLLYKNNGVDIITATPGRLKDFLS----EGS 328 Query 120 VELTVFSLIVVDECHH 135 + L S V+DE Sbjct 329 ISLANVSFAVLDEADR 344 >sp|A4RGD1|RRP3_PYRO7 ATP-dependent rRNA helicase RRP3 OS=Pyricularia oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 GN=RRP3 PE=3 SV=1 Length=538 Score = 126 bits (315), Expect = 4e-29, Method: Composition-based stats. Identities = 48/220 (22%), Positives = 87/220 (40%), Gaps = 24/220 (11%) Query 332 DDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQ 391 + + L P K L L +F+ I+FTRT A + + L+ Sbjct 319 EKTVSTLIQNPLFIPHKHKDVYLI-YLANEFAGKT---TIVFTRTVNEAQRVSILLRTLS 374 Query 392 GLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN 451 G ++Q + + KF+ + ++LVAT VA GLDIP + Sbjct 375 --------------FGAIPLHGQLSQSMRLGALNKFKARSRDILVATDVAARGLDIPEVD 420 Query 452 VVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAA 509 +V+ + + + ++ + GR ARA +S A + T+ EL + AL Sbjct 421 LVINFDMPQDSMTYIHRVGRTARAGRSGRAISIITQYDLELWLRIEKAAL----NGRKLP 476 Query 510 VQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPV 549 + + D+ E +++A R A E++ ++ V Sbjct 477 LFQPDKEEVMVFKERVEEAQRHAREEMKALHEDRGKKGAV 516 Score = 63.3 bits (152), Expect = 5e-09, Method: Composition-based stats. Identities = 63/429 (15%), Positives = 133/429 (31%), Gaps = 44/429 (10%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVT---Q 62 Q + I AL+G+++I TG+GKT A A + + LE +VL L Q Sbjct 137 QEQAIPLALQGRDVIGIAETGSGKTAAFALPILQSLLEKPQPLFGLVLAPTRELAAQIGQ 196 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 E + R V DM ++ L + +++ T L L + L Sbjct 197 TFEALGASISLRCAVVVGGLDMVSQST--ALGKKPHIVVATPGRLLDHLEKTKG---FSL 251 Query 123 TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAI 182 +V+DE D + I+ + L+ + + +A+ + S ++ Sbjct 252 RSLKFLVMDEADRLL-DLDFGPILDKILKFLPRER----RTFLFSATMSSKVESLQRASL 306 Query 183 NHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHD 242 L++ + +S P H + L + F + + + Sbjct 307 RDPLKVSVSSSQEKTVSTLIQNPLFIPHKHKDVYLIYLA-----NEFAGKTTIVFTRTVN 361 Query 243 HLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDA 302 + + + + +LS++ L L + + + + D + VD Sbjct 362 EAQRVSILLRTLSFGAIPLHGQLSQSMRLGALNKFKARSRDILVATDVAARGLDIPEVDL 421 Query 303 LAALQD------FYHR--EHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEML 354 + + HR + A + + + A +G + P Sbjct 422 VINFDMPQDSMTYIHRVGRTARAGRSGRAISIITQYDLELWLRIEKAALNGRKLP----- 476 Query 355 EKILQRQFSSSNSPRGIIFTRTRQSAHSLLL----WLQQQQGLQTVDIRAQLLIGAGNSS 410 F ++F + A L + +G + ++ G+ Sbjct 477 ------LFQPDKEE-VMVFKERVEEAQRHAREEMKALHEDRGKKGAVLK-GRKRGSATKR 528 Query 411 QSTHMTQRD 419 + M + Sbjct 529 RHDDMDAEE 537 >sp|Q4IJH1|DBP3_GIBZE ATP-dependent RNA helicase DBP3 OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=DBP3 PE=3 SV=1 Length=581 Score = 126 bits (316), Expect = 4e-29, Method: Composition-based stats. Identities = 41/194 (21%), Positives = 75/194 (39%), Gaps = 23/194 (12%) Query 350 KLEMLEKILQRQFSSSN-SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN 408 K L ++L+ S + R ++F ++ A + +L ++ IR + G Sbjct 399 KEFRLLEVLKEHQQGSKKNDRILVFCLYKKEATRIENFLSRK------GIRVGGIHG--- 449 Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 + Q + ++ F+ G +LVAT VA GLDIP +V+ V Sbjct 450 -----DLRQEQRTRSLEAFKSGQTPVLVATDVAARGLDIPEVKLVINVTFPLTIEDYVHR 504 Query 469 RGR-ARADQSVYAF-VATEGSRELKRELI------NEALETLMEQAVAAVQKMDQAEYQA 520 GR RA ++ A T + L+ N+ + + + V+K Y A Sbjct 505 IGRTGRAGKTGQAITFFTVEDKSHSGSLVNILRGANQPVPEDLLKFGTTVKKKAHDMYGA 564 Query 521 KIRDLQQAALTKRA 534 +D+ A + + Sbjct 565 FFKDVDMNAKSTKI 578 Score = 54.0 bits (128), Expect = 3e-06, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 48/124 (39%), Gaps = 7/124 (6%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA--KVVVLVNRVHLVTQHGEEFRRMLD 72 L G+++I TG+GKT A A + + K VV+ L Q E+ + Sbjct 196 LSGRDVIGVAETGSGKTMAFALPCVEAISALKHKHTKAVVVSPTRELAMQTYEQMASVAA 255 Query 73 G-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVD 131 R L G L R D+++ T L+ ++ V+L+ + V+D Sbjct 256 LNRMKCVCLYGGASKDDQRNLLNRGADIIVATPGRLKDFMSD----GTVDLSHSAFAVLD 311 Query 132 ECHH 135 E Sbjct 312 EADR 315 >sp|Q6CH58|RRP3_YARLI ATP-dependent rRNA helicase RRP3 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=RRP3 PE=3 SV=1 Length=480 Score = 124 bits (312), Expect = 4e-29, Method: Composition-based stats. Identities = 62/343 (18%), Positives = 119/343 (35%), Gaps = 43/343 (13%) Query 228 PFGDLLKKLMDQIHDHLEMPELSRKF--GTQMYEQQVVKLSEAAALAGLQEQRVYALHLR 285 P +L ++ + L G Q V LS+ + R+ HL Sbjct 140 PTRELAYQISETFEALGSAMGLRTAVVVGGMNMMTQAVALSKKPHVIVATPGRLVD-HLE 198 Query 286 RYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFD----DRKNELAHL 341 L +D L D + K + +R LF + +L Sbjct 199 NTKGFSLRTLKFLVMDEADRLLDMEFGPSLDKILKVIPRQRNTYLFSATMTSKVEKLQRA 258 Query 342 ATHGPE----NPKLEMLEKILQRQ----FSSSNSPRG-----------IIFTRTRQSAHS 382 + P + K + + +LQ F ++ IIF RT+ Sbjct 259 SLVDPVRVAVSTKYQTADNLLQYMVFCPFKHKDTHLVYLVSENAGNSMIIFARTKSDTQR 318 Query 383 LLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAE 442 + L L+ +G G ++Q + + KF+ G+ N+L+AT VA Sbjct 319 ISLLLRN--------------LGYGAIPLHGDLSQTARLGALNKFKSGSRNILIATDVAS 364 Query 443 EGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALET 501 GLDIP ++V+ Y + ++ S + GR ARA ++ + I AL Sbjct 365 RGLDIPAVDLVINYDIPSDSKSYIHRVGRTARAGRAGKSVALVSQYDLELYLRIEGALGK 424 Query 502 LMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQR 544 ++ + + + ++ + +AA+ + + ++ + Sbjct 425 KLDSYPLESEAV--MLFSERVAEASRAAIQEMKGEDGTKKRSK 465 Score = 62.5 bits (150), Expect = 7e-09, Method: Composition-based stats. Identities = 34/131 (26%), Positives = 50/131 (38%), Gaps = 5/131 (4%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q + I ALEG++II TG+GKT A A V + E VVL L Q E Sbjct 91 QAQSIPYALEGRDIIGLAQTGSGKTAAFAIPVLQSLYENPQPLYCVVLAPTRELAYQISE 150 Query 66 EFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 F + + G M L++ +++ T L L + + L Sbjct 151 TFEALGSAMGLRTAVVVGGMNMMTQAVALSKKPHVIVATPGRLVDHLENTKG---FSLRT 207 Query 125 FSLIVVDECHH 135 +V+DE Sbjct 208 LKFLVMDEADR 218 >sp|A5DAC8|DBP3_PICGU ATP-dependent RNA helicase DBP3 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DBP3 PE=3 SV=2 Length=534 Score = 125 bits (314), Expect = 4e-29, Method: Composition-based stats. Identities = 41/194 (21%), Positives = 78/194 (40%), Gaps = 25/194 (13%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K L ++L++ + + ++F ++ A + L++ G + Sbjct 356 KERRLLQLLRQY---GSDQKILVFALYKKEATRVEAMLRRS--------------GFNVA 398 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + ++Q+ + + F+ G NLL+AT VA GLDIP+ VV+ V Sbjct 399 AIHGDLSQQQRTSALDSFKRGDSNLLLATDVAARGLDIPNVKVVINLTFPLTVEDYVHRI 458 Query 470 GR-ARADQSVYAF-VATEGSRELKRELIN------EALETLMEQAVAAVQKMDQAEYQAK 521 GR RA Q+ A + TE + L L+N + + + + +K + Y A Sbjct 459 GRTGRAGQTGIAHTLFTEHEKHLSGALMNVLRGAGQPVPDELLKFGGHTKKKSHSAYGAF 518 Query 522 IRDLQQAALTKRAA 535 +D+ K+ Sbjct 519 FKDVDMTKTAKKIK 532 Score = 47.9 bits (112), Expect = 3e-04, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 46/125 (37%), Gaps = 10/125 (8%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA--KVVVLVNRVHLVTQHGEEFRRMLD 72 L G +++ TG+GKT A A ++ T + +V+ + L Q + + Sbjct 164 LNGDDVVGVAETGSGKTFAFGVPAINNIITDNKKGLRVLCISPTRELALQIYDNLTMLTK 223 Query 73 --GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV 130 G V G P+ + +++ T L L V+L+ +V+ Sbjct 224 NCGLTCVAIYGG--VPKDQQIKAVKTASVVVATPGRLVDLLND----GAVDLSTIDYLVL 277 Query 131 DECHH 135 DE Sbjct 278 DEADR 282 >sp|Q64060|DDX4_RAT Probable ATP-dependent RNA helicase DDX4 OS=Rattus norvegicus OX=10116 GN=Ddx4 PE=1 SV=1 Length=713 Score = 127 bits (318), Expect = 4e-29, Method: Composition-based stats. Identities = 57/298 (19%), Positives = 105/298 (35%), Gaps = 56/298 (19%) Query 255 TQMYEQQVVKLSEAAALAGLQEQRVYALHL-RRYNDALLIHDTVRAVDALAALQDFYHRE 313 Q V + A G + + + L++ + R +D + ++ Sbjct 391 GHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGFGPEM---KK 447 Query 314 HVTKTQILCAERRLLALFDD-RKNELAHLATH---------------------------- 344 ++ + E+R LF E+ LA Sbjct 448 LISCPGMPSKEQRQTLLFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQSILQV 507 Query 345 GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI 404 GP K L +IL+ R ++F T++ A + +L Q++ Sbjct 508 GPVFKK-RKLVEILRNI----GDERPMVFVETKKKADFIATFLCQEK------------- 549 Query 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 +S QR++++ + F+ G +LVATSVA GLDI + V+ + L + Sbjct 550 -ISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFNLPSTIDE 608 Query 465 MVQARGR-ARADQSVYA--FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQ 519 V GR R + A F TE L + L+ + L + A ++++ + Y Sbjct 609 YVHRIGRTGRCGNTGRAISFFDTESDNHLAQPLV-KVLSDAQQDVPAWLEEIAFSSYA 665 Score = 48.3 bits (113), Expect = 2e-04, Method: Composition-based stats. Identities = 26/166 (16%), Positives = 56/166 (34%), Gaps = 16/166 (10%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRH----------LETVDGAKVVVLVNRVHLVTQHG 64 L G++++ TG+GKT A H + + + +++ L+ Q Sbjct 308 LAGRDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIY 367 Query 65 EEFRRM-LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELT 123 E R+ + G + + ++L T L + + + L Sbjct 368 LEARKFSFGTCVRAVVIYGGTQFGHSIRQIVQGCNILCATPGRLMDIIGKEK----IGLK 423 Query 124 VFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS 169 +V+DE D + M + + ++ Q L +A+ Sbjct 424 QVKYLVLDEADR-MLDMGFGPEMKKLISCPGMPSKEQRQTLLFSAT 468 >sp|A5DL80|DBP2_PICGU ATP-dependent RNA helicase DBP2 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DBP2 PE=3 SV=3 Length=554 Score = 125 bits (314), Expect = 5e-29, Method: Composition-based stats. Identities = 55/303 (18%), Positives = 106/303 (35%), Gaps = 52/303 (17%) Query 253 FGTQMYEQQVVKLSEAAALAGLQEQRVY------ALHLRRYNDALLIHDTVRAVDALAAL 306 +G QQ+ L+ + R+ +LRR L++ + R +D Sbjct 233 YGGAPKGQQIRDLARGVEICIATPGRLIDMLETGKTNLRR-VTYLVLDEADRMLDMGFEP 291 Query 307 QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGP-------------------- 346 Q R+ V + + A + L + P Sbjct 292 Q---IRKIVDQIRPDRQTLMWSATWPKEVQTLTRDYLNDPIQVTIGSLELAASHTITQIV 348 Query 347 ----ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL 402 E K + L K L ++ + +IF+ T+++ + +L+ Sbjct 349 EVLSEFEKRDRLVKHL-ETATADKEAKVLIFSSTKRACDEITSYLRAD------------ 395 Query 403 LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE 462 G + Q ++ V+++F+ G ++VAT VA G+D+ + V+ Y + N Sbjct 396 --GWPALAIHGDKQQNERDWVLREFKTGKSPIMVATDVAARGIDVKGISYVINYDMPGNI 453 Query 463 ISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA 520 V GR RA + A + TE + +L +L E + + D+ + + Sbjct 454 EDYVHRIGRTGRAGTTGTAVSLFTEANSKLGGDLCKIMREANQ-TVPPELLRYDRRSFGS 512 Query 521 KIR 523 IR Sbjct 513 HIR 515 Score = 53.3 bits (126), Expect = 6e-06, Method: Composition-based stats. Identities = 63/347 (18%), Positives = 117/347 (34%), Gaps = 44/347 (13%) Query 14 ALEGKNIIIWLPTGAGKTR------AAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEF 67 AL G+++I TG+GKT A+ L DG V+VL L Q +E Sbjct 159 ALSGRDMIGIAATGSGKTLSYCLPSIVHINAQPLLGPGDGPIVLVLAPTRELAVQIQQEC 218 Query 68 RRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS 126 + R T + G LAR ++ I T L L E L + Sbjct 219 SKFGASSRIRNTCIYGGAPKGQQIRDLARGVEICIATPGRLIDML----ETGKTNLRRVT 274 Query 127 LIVVDECHHTHKDTVYNVIMSQYLELKLQR----AQPLPQVLGLTAS-PGTGGASKLDGA 181 +V+DE + ++ E ++++ +P Q L +A+ P D Sbjct 275 YLVLDEA---------DRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVQTLTRDYL 325 Query 182 INHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIH 241 + + +L+ + L E ++ +L + L+ + Sbjct 326 NDPIQVTIGSLELAASHTITQIVEVLSEFEKRDRLVKHLETATADKEAKVLIFSSTKRAC 385 Query 242 DHLEMPELSRKFGT----------QMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDAL 291 D E+ R G Q V++ + + V A + + Sbjct 386 D--EITSYLRADGWPALAIHGDKQQNERDWVLREFKTGKSPIMVATDVAARGIDVKGISY 443 Query 292 LIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNEL 338 +I+ D ++D+ HR + +T ++LF + ++L Sbjct 444 VIN-----YDMPGNIEDYVHR--IGRTGRAGTTGTAVSLFTEANSKL 483 >sp|Q6FNK8|RRP3_CANGA ATP-dependent rRNA helicase RRP3 OS=Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=RRP3 PE=3 SV=1 Length=493 Score = 124 bits (312), Expect = 5e-29, Method: Composition-based stats. Identities = 46/216 (21%), Positives = 82/216 (38%), Gaps = 32/216 (15%) Query 346 PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 P K L +L + IIFTRT+ +A L ++ A L G Sbjct 296 PGGLKNTFLIYLLNEFIGKT----VIIFTRTKANAERLSGL------CNLLEFSATALHG 345 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465 + Q + + F+ G ++LVAT VA GLDIP ++V+ Y + + S Sbjct 346 --------DLNQNQRTGALDLFKAGKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSY 397 Query 466 VQARGR-ARADQSVYAFVATEG-------------SRELKRELINEALETLMEQAVAAVQ 511 + GR ARA +S + ++L +E +++ + + +V Sbjct 398 IHRVGRTARAGRSGKSISLVSQYDLELILRIEEVLGKKLPKESVDKNIILTLRDSVDKAN 457 Query 512 KMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQF 547 E + ++ Q +R A+ R++ Sbjct 458 GEVVMEMNRRNKEKQARGKGRRGRMMAKENMDREEK 493 Score = 57.9 bits (138), Expect = 2e-07, Method: Composition-based stats. Identities = 34/131 (26%), Positives = 47/131 (36%), Gaps = 5/131 (4%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q I PAL G ++I TG+GKT A A + + E VL L Q E Sbjct 100 QARAIPPALAGSDVIGLAQTGSGKTAAFAIPILNKLWEDQQPYYACVLAPTRELAQQIKE 159 Query 66 EFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 F + T + G M L R ++I T L L + + L Sbjct 160 TFDSLGSLMGVRTTCIVGGMNMMDQARDLMRKPHIIIATPGRLMDHLENTKG---FSLKN 216 Query 125 FSLIVVDECHH 135 +V+DE Sbjct 217 LKFLVMDEADR 227 >sp|Q6CT85|RRP3_KLULA ATP-dependent rRNA helicase RRP3 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=RRP3 PE=3 SV=1 Length=487 Score = 124 bits (311), Expect = 6e-29, Method: Composition-based stats. Identities = 47/202 (23%), Positives = 85/202 (42%), Gaps = 25/202 (12%) Query 346 PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 P K L +L S I+FTRT+ +A + ++ A L G Sbjct 290 PGGLKNTFLIYLLNEFIGKS----TIVFTRTKANAERISNL------CNLLEFSATALHG 339 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465 + Q + + F+ G ++LVAT VA GLDIP ++V+ Y + + S Sbjct 340 --------DLNQNQRTGALDLFKAGKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSY 391 Query 466 VQARGR-ARADQSVYAF-VATEGSREL---KRELINEAL--ETLMEQAVAAVQKMDQAEY 518 + GR ARA +S + + ++ EL +++ + L E + + A+ A++ Sbjct 392 IHRVGRTARAGRSGKSISLVSQYDLELILRIEDVLGKKLPKENVDKDAILALRDSVDKAN 451 Query 519 QAKIRDLQQAALTKRAAQAAQR 540 + +L + K+A +R Sbjct 452 GEVVMELNRRNKEKQARGKGRR 473 Score = 58.3 bits (139), Expect = 2e-07, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 48/131 (37%), Gaps = 5/131 (4%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q + I PAL+G +II TG+GKT A A + + +L L Q E Sbjct 94 QSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPYYACILAPTRELAQQIKE 153 Query 66 EFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 F + T + G M L R ++I T L L + + L Sbjct 154 TFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIATPGRLMDHLENTKG---FNLRK 210 Query 125 FSLIVVDECHH 135 +V+DE Sbjct 211 LKYLVMDEADR 221 >sp|P9WH05|DEAD_MYCTU ATP-dependent RNA helicase DeaD OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=deaD PE=1 SV=1 Length=563 Score = 125 bits (314), Expect = 6e-29, Method: Composition-based stats. Identities = 59/326 (18%), Positives = 112/326 (34%), Gaps = 37/326 (11%) Query 225 SQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHL 284 + + + +L + +G Y Q+ L A + R+ HL Sbjct 89 PTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRGAQVVVGTPGRMID-HL 147 Query 285 RRY------NDALLIHDTVRA--------VDALAALQDFYHREHVTKTQILCAERRLLAL 330 R D L++ + V+ + + Y + + + A R+L A Sbjct 148 ERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVALFSATMPPAIRKLSAK 207 Query 331 FDDRKNEL------AHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLL 384 + E+ A ++ L R I+F RT+Q+ + Sbjct 208 YLHDPFEVTCKAKTAVAENISQSYIQVARKMDALTRVLEVEPFEAMIVFVRTKQATEEIA 267 Query 385 LWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEG 444 L+ + G ++ S + Q ++ I +DG +++LVAT VA G Sbjct 268 EKLRAR--------------GFSAAAISGDVPQAQRERTITALRDGDIDILVATDVAARG 313 Query 445 LDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSR-ELKRELINEALETL 502 LD+ + V+ Y + + S V GR RA +S A + L + + +TL Sbjct 314 LDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIEKATRQTL 373 Query 503 MEQAVAAVQKMDQAEYQAKIRDLQQA 528 E + V+ ++ + A Sbjct 374 TEAQLPTVEDVNTQRVAKFADSITNA 399 Score = 52.1 bits (123), Expect = 1e-05, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 41/111 (37%), Gaps = 7/111 (6%) Query 26 TGAGKTRAAAYVAKRHLETVDG-AKVVVLVNRVHLVTQHGEEFRRMLD--GRWTVTTLSG 82 TG GKT A A ++ + +VLV L Q E F R + V + G Sbjct 59 TGTGKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYG 118 Query 83 DMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC 133 L R +++ T + L E ++L+ +V+DE Sbjct 119 GSSYAVQLAGLRRGAQVVVGTPGRMIDHL----ERATLDLSRVDFLVLDEA 165 >sp|P9WH04|DEAD_MYCTO ATP-dependent RNA helicase DeaD OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=deaD PE=3 SV=1 Length=563 Score = 125 bits (314), Expect = 6e-29, Method: Composition-based stats. Identities = 59/326 (18%), Positives = 112/326 (34%), Gaps = 37/326 (11%) Query 225 SQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHL 284 + + + +L + +G Y Q+ L A + R+ HL Sbjct 89 PTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRGAQVVVGTPGRMID-HL 147 Query 285 RRY------NDALLIHDTVRA--------VDALAALQDFYHREHVTKTQILCAERRLLAL 330 R D L++ + V+ + + Y + + + A R+L A Sbjct 148 ERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVALFSATMPPAIRKLSAK 207 Query 331 FDDRKNEL------AHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLL 384 + E+ A ++ L R I+F RT+Q+ + Sbjct 208 YLHDPFEVTCKAKTAVAENISQSYIQVARKMDALTRVLEVEPFEAMIVFVRTKQATEEIA 267 Query 385 LWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEG 444 L+ + G ++ S + Q ++ I +DG +++LVAT VA G Sbjct 268 EKLRAR--------------GFSAAAISGDVPQAQRERTITALRDGDIDILVATDVAARG 313 Query 445 LDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSR-ELKRELINEALETL 502 LD+ + V+ Y + + S V GR RA +S A + L + + +TL Sbjct 314 LDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIEKATRQTL 373 Query 503 MEQAVAAVQKMDQAEYQAKIRDLQQA 528 E + V+ ++ + A Sbjct 374 TEAQLPTVEDVNTQRVAKFADSITNA 399 Score = 52.1 bits (123), Expect = 1e-05, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 41/111 (37%), Gaps = 7/111 (6%) Query 26 TGAGKTRAAAYVAKRHLETVDG-AKVVVLVNRVHLVTQHGEEFRRMLD--GRWTVTTLSG 82 TG GKT A A ++ + +VLV L Q E F R + V + G Sbjct 59 TGTGKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYG 118 Query 83 DMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC 133 L R +++ T + L E ++L+ +V+DE Sbjct 119 GSSYAVQLAGLRRGAQVVVGTPGRMIDHL----ERATLDLSRVDFLVLDEA 165 >sp|P20447|DBP3_YEAST ATP-dependent RNA helicase DBP3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DBP3 PE=1 SV=2 Length=523 Score = 124 bits (312), Expect = 6e-29, Method: Composition-based stats. Identities = 42/195 (22%), Positives = 79/195 (41%), Gaps = 25/195 (13%) Query 350 KLEMLEKILQR-QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN 408 K L ++L++ + + +IF ++ A + L+ G Sbjct 341 KERKLLELLKKYHSGPKKNEKVLIFALYKKEAARVERNLK--------------YNGYNV 386 Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 ++ ++Q+ + + + +F+ G NLL+AT VA GLDIP+ V+ V Sbjct 387 AAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHR 446 Query 469 RGR-ARADQSVYAF-VATEGSRELKRELIN-------EALETLMEQAVAAVQKMDQAEYQ 519 GR RA Q+ A + TE + L L+N E L++ +K + + Y Sbjct 447 IGRTGRAGQTGTAHTLFTEQEKHLAGGLVNVLNGANQPVPEDLIKFGTHT-KKKEHSAYG 505 Query 520 AKIRDLQQAALTKRA 534 + +D+ K+ Sbjct 506 SFFKDVDLTKKPKKI 520 Score = 56.3 bits (134), Expect = 7e-07, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 9/125 (7%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK---VVVLVNRVHLVTQHGEEFRRML 71 L GK+++ TG+GKT A A HL + V+V+ L +Q + + Sbjct 147 LSGKDVVGVAETGSGKTFAFGVPAISHLMNDQKKRGIQVLVISPTRELASQIYDNLIVLT 206 Query 72 DGR-WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV 130 D + G + L + +++ T L L +E V+L+ + +V+ Sbjct 207 DKVGMQCCCVYGGVPKDEQRIQLKKS-QVVVATPGRLLDLL----QEGSVDLSQVNYLVL 261 Query 131 DECHH 135 DE Sbjct 262 DEADR 266 >sp|Q91372|DDX4_XENLA Probable ATP-dependent RNA helicase DDX4 OS=Xenopus laevis OX=8355 GN=ddx4 PE=2 SV=1 Length=700 Score = 126 bits (316), Expect = 6e-29, Method: Composition-based stats. Identities = 51/263 (19%), Positives = 91/263 (35%), Gaps = 55/263 (21%) Query 265 LSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAE 324 + L + + L RY L++ + R +D A + + +TK + E Sbjct 406 CATPGRLLDIVSKEKIGLSKLRY---LVLDEADRMLDMGFAPE---IEKLMTKPGMPTKE 459 Query 325 RRLLALFDDRKNE----------------------------LAHLATHGPENPKLEMLEK 356 +R +F E +A EN K+E L + Sbjct 460 KRQTLMFSATYPEEIRRLASNYLKSEHLFVVVGLVGGACSDVAQTVLEMRENGKMEKLLE 519 Query 357 ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT 416 IL+ SS R +IF T++ A + +L Q++ ++S Sbjct 520 ILK----SSEKERTMIFVNTKKKADFIAGYLCQEK--------------FSSTSIHGDRE 561 Query 417 QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARA-- 474 Q ++ + F+ G ++V T+VA GLDI + V+ Y + V GR Sbjct 562 QYQRESALWDFRTGKCTVIVCTAVAARGLDIENVQHVINYDVPKEVDEYVHRIGRTGRCG 621 Query 475 -DQSVYAFVATEGSRELKRELIN 496 +F + + R L+ Sbjct 622 NTGKATSFFNVQDDHVIARPLVK 644 Score = 42.5 bits (98), Expect = 0.012, Method: Composition-based stats. Identities = 20/134 (15%), Positives = 50/134 (37%), Gaps = 19/134 (14%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA------------KVVVLVNRVHLVTQ 62 + G++++ TG+GKT AA++ ++ + +++ L+ Q Sbjct 309 MAGRDLMACAQTGSGKT--AAFLLPILSYMMNEGITASQYLQLQEPEAIIIAPTRELINQ 366 Query 63 HGEEFRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVE 121 + R+ + G + P + + ++L T L ++ + + Sbjct 367 IYLDARKFSYGTCVRPVVVYGGIQPVHAMRDVEKGCNILCATPGRLLDIVSKEK----IG 422 Query 122 LTVFSLIVVDECHH 135 L+ +V+DE Sbjct 423 LSKLRYLVLDEADR 436 >sp|Q755A5|DBP3_EREGS ATP-dependent RNA helicase DBP3 OS=Eremothecium gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=DBP3 PE=3 SV=1 Length=535 Score = 125 bits (313), Expect = 6e-29, Method: Composition-based stats. Identities = 44/212 (21%), Positives = 82/212 (39%), Gaps = 25/212 (12%) Query 333 DRKNELAHLATHGPENPKLEMLEKILQRQFSS-SNSPRGIIFTRTRQSAHSLLLWLQQQQ 391 + + K + L ++L++ S + + +IF ++ A + L+ Sbjct 336 SANKRITQVVEVIDPFKKEKRLLELLKQYQSGAKKNDKVLIFALYKKEASRVERNLK--- 392 Query 392 GLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN 451 G ++ ++Q+ + + + +F+ GT NLL+AT VA GLDIP+ Sbjct 393 -----------YNGYNVAAIHGDLSQQQRTQALSEFKAGTANLLLATDVAARGLDIPNVK 441 Query 452 VVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELIN-------EALETL 502 V+ V GR RA + A + TE + L L+N E L Sbjct 442 TVINLTFPLTVEDYVHRIGRTGRAGATGVAHTLFTEQEKHLAGALVNVLNGAGQPVPEEL 501 Query 503 MEQAVAAVQKMDQAEYQAKIRDLQQAALTKRA 534 M+ +K + Y A +++ K+ Sbjct 502 MKFGTHTKRK-EHNAYGAFYKNVDLTKKAKKI 532 Score = 55.2 bits (131), Expect = 2e-06, Method: Composition-based stats. Identities = 38/238 (16%), Positives = 77/238 (32%), Gaps = 25/238 (11%) Query 15 LEGKNIIIWLPTGAGKTRA----AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRM 70 L GK++I TG+GKT A A T G K +V+ L +Q + ++ Sbjct 158 LAGKDVIGVAETGSGKTFAFGVPAINSLMSEKSTPRGVKCLVISPTRELASQIYDNLVQL 217 Query 71 LDGR-WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIV 129 D + G + + L + +++ T L + EE +L +V Sbjct 218 TDKVGLNCCCVYGGVQKDSQREQLKKA-QVVVATPGRLLDLI----EEGSAKLAGVQYLV 272 Query 130 VDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLC 189 +DE + + + + Q L TA+ V +L Sbjct 273 LDEADRMLEKG----FEEDIKRIIKETKSDVRQTLMFTAT-----------WPKEVRELA 317 Query 190 ANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMP 247 + + +L + + + + + +LLK+ + ++ Sbjct 318 STFMRAPVKVSIGNRDELSANKRITQVVEVIDPFKKEKRLLELLKQYQSGAKKNDKVL 375 >sp|P0A4D8|CSHA_STRR6 DEAD-box ATP-dependent RNA helicase CshA OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) OX=171101 GN=cshA PE=3 SV=1 Length=524 Score = 124 bits (312), Expect = 7e-29, Method: Composition-based stats. Identities = 72/402 (18%), Positives = 133/402 (33%), Gaps = 49/402 (12%) Query 168 ASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQD 227 ASP L V+ T + P L++ + L +++ Sbjct 24 ASPIQEQTIPLALEGKDVIGQAQ---TGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRE 80 Query 228 PFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRY 287 ++L + ++ +G E+Q+ L A + R+ L R+ Sbjct 81 LAVQSQEELF--RFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKA 138 Query 288 NDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFD----DRKNELAHLAT 343 I + +D + + E + E R LF D + Sbjct 139 LKLQDIETLI--LDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFM 196 Query 344 HGPENPKL--EMLEKILQRQFS-----------------SSNSPRGIIFTRTRQSAHSLL 384 PE+ K+ + L L Q+ + I+F RT++ L Sbjct 197 KAPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVAQPELAIVFGRTKRRVDELT 256 Query 385 LWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEG 444 GL+ RA+ + G + Q + V++ F++G L++LVAT VA G Sbjct 257 R------GLKIRGFRAEGIHG--------DLDQNKRLRVLRDFKNGNLDVLVATDVAARG 302 Query 445 LDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLM 503 LDI V Y + + S V GR RA +S + + + +E L Sbjct 303 LDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGY----LQIIENLT 358 Query 504 EQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQ 545 ++ + ++ E + + + + A R N + Sbjct 359 KKRMKGLKPASVEESFQSKKQVALKKIERDFADETIRANFEK 400 Score = 54.8 bits (130), Expect = 2e-06, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 48/129 (37%), Gaps = 6/129 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQ-HG 64 Q + I ALEGK++I TG GKT A + T + + +V+ L Q Sbjct 28 QEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQE 87 Query 65 EEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 E FR V ++ G L +++ T L + ++L Sbjct 88 ELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKA----LKLQD 143 Query 125 FSLIVVDEC 133 +++DE Sbjct 144 IETLILDEA 152 >sp|P0A4D7|CSHA_STRPN DEAD-box ATP-dependent RNA helicase CshA OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) OX=170187 GN=cshA PE=3 SV=1 Length=524 Score = 124 bits (312), Expect = 7e-29, Method: Composition-based stats. Identities = 72/402 (18%), Positives = 133/402 (33%), Gaps = 49/402 (12%) Query 168 ASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQD 227 ASP L V+ T + P L++ + L +++ Sbjct 24 ASPIQEQTIPLALEGKDVIGQAQ---TGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRE 80 Query 228 PFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRY 287 ++L + ++ +G E+Q+ L A + R+ L R+ Sbjct 81 LAVQSQEELF--RFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKA 138 Query 288 NDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFD----DRKNELAHLAT 343 I + +D + + E + E R LF D + Sbjct 139 LKLQDIETLI--LDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFM 196 Query 344 HGPENPKL--EMLEKILQRQFS-----------------SSNSPRGIIFTRTRQSAHSLL 384 PE+ K+ + L L Q+ + I+F RT++ L Sbjct 197 KAPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVAQPELAIVFGRTKRRVDELT 256 Query 385 LWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEG 444 GL+ RA+ + G + Q + V++ F++G L++LVAT VA G Sbjct 257 R------GLKIRGFRAEGIHG--------DLDQNKRLRVLRDFKNGNLDVLVATDVAARG 302 Query 445 LDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLM 503 LDI V Y + + S V GR RA +S + + + +E L Sbjct 303 LDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGY----LQIIENLT 358 Query 504 EQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQ 545 ++ + ++ E + + + + A R N + Sbjct 359 KKRMKGLKPASVEESFQSKKQVALKKIERDFADETIRANFEK 400 Score = 54.8 bits (130), Expect = 2e-06, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 48/129 (37%), Gaps = 6/129 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQ-HG 64 Q + I ALEGK++I TG GKT A + T + + +V+ L Q Sbjct 28 QEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQE 87 Query 65 EEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 E FR V ++ G L +++ T L + ++L Sbjct 88 ELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKA----LKLQD 143 Query 125 FSLIVVDEC 133 +++DE Sbjct 144 IETLILDEA 152 >sp|Q6FS54|DBP3_CANGA ATP-dependent RNA helicase DBP3 OS=Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DBP3 PE=3 SV=1 Length=540 Score = 124 bits (312), Expect = 7e-29, Method: Composition-based stats. Identities = 46/214 (21%), Positives = 82/214 (38%), Gaps = 26/214 (12%) Query 331 FDDRKNELAHLATHGPENPKLEMLEKILQRQFS-SSNSPRGIIFTRTRQSAHSLLLWLQQ 389 K + P + K L +L++ S + + +IF ++ A + L Sbjct 340 LSANKRITQIVEVVDPRS-KERKLLDLLKKYQSGPKKNDKVLIFALYKKEASRVERNLN- 397 Query 390 QQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPH 449 G ++ ++Q+ + + + +F+ G NLL+AT VA GLDIP+ Sbjct 398 -------------YNGYKVAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPN 444 Query 450 CNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELIN-------EALE 500 V+ V GR RA Q+ A + TE + L L+N E Sbjct 445 VKTVINLTFPLTVEDYVHRIGRTGRAGQTGTAHTLFTEQEKHLAGGLVNVLNGANQPVPE 504 Query 501 TLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRA 534 L++ +K + Y A +D+ + K+ Sbjct 505 DLIKFGTHTKRK-EHGAYGAFFKDIDMSKKPKKI 537 Score = 56.7 bits (135), Expect = 4e-07, Method: Composition-based stats. Identities = 41/238 (17%), Positives = 79/238 (33%), Gaps = 25/238 (11%) Query 15 LEGKNIIIWLPTGAGKTRA----AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRM 70 L GK++I TG+GKT A A G KV+V+ L +Q + + Sbjct 163 LSGKDVIGVAETGSGKTFAFGVPAINNLLTSSSKPKGIKVLVISPTRELASQIYDNLVLL 222 Query 71 L-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIV 129 + G + +A+ + +++ T L + EE V+L+ +V Sbjct 223 TQKVGIDCCVVYGGVPKDDQRRQIAKSN-VVVATPGRLLDLI----EEGSVDLSPVDYMV 277 Query 130 VDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLC 189 +DE L+ + + +++G T S V +L Sbjct 278 LDEADR---------------MLEKGFEEDIKRIIGQTKSKDRQTLMFTATWPKEVRELA 322 Query 190 ANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMP 247 + + +L + + + R + DLLKK + ++ Sbjct 323 STFMKEPVKVSIGNRDELSANKRITQIVEVVDPRSKERKLLDLLKKYQSGPKKNDKVL 380 >sp|A6ZUA1|DBP3_YEAS7 ATP-dependent RNA helicase DBP3 OS=Saccharomyces cerevisiae (strain YJM789) OX=307796 GN=DBP3 PE=3 SV=1 Length=523 Score = 124 bits (312), Expect = 7e-29, Method: Composition-based stats. Identities = 42/195 (22%), Positives = 79/195 (41%), Gaps = 25/195 (13%) Query 350 KLEMLEKILQR-QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN 408 K L ++L++ + + +IF ++ A + L+ G Sbjct 341 KERKLLELLKKYHSGPKKNEKVLIFALYKKEAARVERNLK--------------YNGYNI 386 Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 ++ ++Q+ + + + +F+ G NLL+AT VA GLDIP+ V+ V Sbjct 387 AAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHR 446 Query 469 RGR-ARADQSVYAF-VATEGSRELKRELIN-------EALETLMEQAVAAVQKMDQAEYQ 519 GR RA Q+ A + TE + L L+N E L++ +K + + Y Sbjct 447 IGRTGRAGQTGTAHTLFTEQEKHLAGGLVNVLNGANQPVPEDLIKFGTHT-KKKEHSAYG 505 Query 520 AKIRDLQQAALTKRA 534 + +D+ K+ Sbjct 506 SFFKDVDLTKKPKKI 520 Score = 56.3 bits (134), Expect = 7e-07, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 9/125 (7%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK---VVVLVNRVHLVTQHGEEFRRML 71 L GK+++ TG+GKT A A HL + V+V+ L +Q + + Sbjct 147 LSGKDVVGVAETGSGKTFAFGVPAISHLMNDQKKRGIQVLVISPTRELASQIYDNLIVLT 206 Query 72 DGR-WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV 130 D + G + L + +++ T L L +E V+L+ + +V+ Sbjct 207 DKVGMQCCCVYGGVPKDEQRIQLKKS-QVVVATPGRLLDLL----QEGSVDLSQVNYLVL 261 Query 131 DECHH 135 DE Sbjct 262 DEADR 266 >sp|Q0CL13|DBP3_ASPTN ATP-dependent RNA helicase dbp3 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=dbp3 PE=3 SV=1 Length=493 Score = 124 bits (310), Expect = 8e-29, Method: Composition-based stats. Identities = 39/208 (19%), Positives = 76/208 (37%), Gaps = 24/208 (12%) Query 335 KNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQ 394 + + + K L ++L++ + + + F ++ A + +LQ + Sbjct 298 NTRIKQVVEVVKPHEKEGRLVQLLKQH--QRGAEKVLAFCLYKKEATRIERFLQSR---- 351 Query 395 TVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV 454 G + ++Q+++ + F+ G +LVAT VA GLDIP +V+ Sbjct 352 ----------GFKVAGIHGDLSQQERFRSLDAFKTGAATVLVATDVAARGLDIPAVKLVI 401 Query 455 RYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELIN------EALETLMEQA 506 V GR RA +A + TE + LIN + + + + Sbjct 402 NVTFPLTVEDYVHRIGRTGRAGAEGHAITLFTETDKAQSGALINVLKAAGQEVPEELLKF 461 Query 507 VAAVQKMDQAEYQAKIRDLQQAALTKRA 534 V+K Y A +D+ + Sbjct 462 GGTVKKKQHDAYGAFFKDVDTTKAATKI 489 Score = 44.0 bits (102), Expect = 0.004, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 48/127 (38%), Gaps = 13/127 (10%) Query 17 GKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK-------VVVLVNRVHLVTQHGEEFRR 69 G+++I TG+GKT A + +E K V++ L Q ++ ++ Sbjct 115 GRDVIGIAETGSGKTLAFGLPCLKKIEDSKKKKSKPYQPMAVIISPTRELAMQIHDQLQK 174 Query 70 MLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLI 128 V + G + + + ++++ T L+ + + V+L + Sbjct 175 FAGPVGAKVACIFGGVRKDEQR-EVLKTANIVVATPGRLKD----LQNDGSVDLGKVRYL 229 Query 129 VVDECHH 135 V+DE Sbjct 230 VLDEADR 236 >sp|Q54CE0|DDX17_DICDI Probable ATP-dependent RNA helicase ddx17 OS=Dictyostelium discoideum OX=44689 GN=ddx17 PE=3 SV=1 Length=785 Score = 126 bits (316), Expect = 9e-29, Method: Composition-based stats. Identities = 39/160 (24%), Positives = 64/160 (40%), Gaps = 16/160 (10%) Query 351 LEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSS 410 E E++L S + I+F TR+ L LQ G + Sbjct 613 FEKKERMLSFLGSVGRDEKVIVFAETRKGVDDLQRVLQ--------------FSGFKSIG 658 Query 411 QSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARG 470 + +Q ++ V+ +F++G + +++AT VA GLDI VV Y + G Sbjct 659 IHGNKSQPERDFVLSQFKNGMVPIMIATDVASRGLDIKDIKYVVNYDFPNTIEVYIHRIG 718 Query 471 R-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVA 508 R ARA S ++ + T + L ELI E + + Sbjct 719 RTARAGASGVSYSLLTTDNARLANELIKVLTEAKQKIPIE 758 Score = 63.7 bits (153), Expect = 4e-09, Method: Composition-based stats. Identities = 35/137 (26%), Positives = 55/137 (40%), Gaps = 13/137 (9%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYV-------AKRHLETVDGAKVVVLVNRVHL 59 Q + AL+G++II TG+GKT A + A+ L DG V+VL L Sbjct 411 QSQAWPIALKGRDIIGLAKTGSGKTL-AFLLPSIVHINAQPVLREDDGPIVLVLAPTREL 469 Query 60 VTQHGEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEE 118 Q EE + + + T + G L + +++I T L L S + Sbjct 470 ALQIQEETNKFGGTSQISNTCVYGGASKHTQVAALKKGVEIVIATPGRLIDILESGKTN- 528 Query 119 HVELTVFSLIVVDECHH 135 L + +V+DE Sbjct 529 ---LRRVTYLVLDEADR 542 >sp|Q966L9|GLH2_CAEEL ATP-dependent RNA helicase glh-2 OS=Caenorhabditis elegans OX=6239 GN=glh-2 PE=1 SV=1 Length=974 Score = 126 bits (317), Expect = 9e-29, Method: Composition-based stats. Identities = 47/264 (18%), Positives = 85/264 (32%), Gaps = 56/264 (21%) Query 269 AALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLL 328 + E+ L R+ ++ + R +DA+ D V + E R Sbjct 688 GRIKHFCEEGTIKLDKCRF---FVLDEADRMIDAMGFGTDI--DTIVNYESMPKKENRQT 742 Query 329 ALFDD----------------------------RKNELAHLATHGPENPKLEMLEKIL-- 358 +F + + K + L +IL Sbjct 743 LMFSATFPDSVQEAARNHLKEGYIMLAIDKIGAANKCVLQEFEKCDRSEKKDKLLEILGI 802 Query 359 -QRQFSSSNSP-----RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQS 412 +++ + + I+F R A +L L Q Sbjct 803 DIDSYTTEKNSEVYTKKTIVFVSQRAMADTLASILSSAQVPAIT--------------IH 848 Query 413 THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR- 471 QR++ E +++F++G+ +L+AT+VAE GLDI + V+ Y + N + GR Sbjct 849 GAREQRERSEALRQFRNGSKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRT 908 Query 472 ARADQSVYAFVATEGSRELKRELI 495 R + A L EL+ Sbjct 909 GRVGNAGRATSFISEDCNLLSELV 932 Score = 48.3 bits (113), Expect = 2e-04, Method: Composition-based stats. Identities = 50/301 (17%), Positives = 98/301 (33%), Gaps = 25/301 (8%) Query 2 ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA------------K 49 ++ Y +I +G +I+ TG+GKT AA++ +D + Sbjct 577 PIQQYTLPLIH---QGHDIMACAQTGSGKT--AAFLLPIMARLIDENDLNTAGEGGCYPR 631 Query 50 VVVLVNRVHLVTQHGEEFRRMLDGRWTVTT-LSGDMGPRAGFGHLARCHDLLICTAELLQ 108 ++L L Q E R+ + G + G + + +++ T Sbjct 632 CIILTPTRELTDQIYNEGRKFAYQTMMEIRPVYGGLAVGYNKGQIEKGATIIVGT----V 687 Query 109 MALTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTA 168 + EE ++L V+DE + + + + + Q L +A Sbjct 688 GRIKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDIDTIVNYESMPKKENRQTLMFSA 747 Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 + S + A NH+ + L I + C Q E + K+ L D Sbjct 748 T---FPDSVQEAARNHLKEGYIMLAIDKIGAANKCVLQEFEKCDRSEKKDKLLEILGIDI 804 Query 229 FGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN 288 +K + + R + A + G +EQR + LR++ Sbjct 805 DSYTTEKNSEVYTKKTIVFVSQRAMADTLASILSSAQVPAITIHGAREQRERSEALRQFR 864 Query 289 D 289 + Sbjct 865 N 865 >sp|P25888|RHLE_ECOLI ATP-dependent RNA helicase RhlE OS=Escherichia coli (strain K12) OX=83333 GN=rhlE PE=1 SV=3 Length=454 Score = 123 bits (309), Expect = 9e-29, Method: Composition-based stats. Identities = 66/356 (19%), Positives = 120/356 (34%), Gaps = 47/356 (13%) Query 186 LQLCANLDTWCIMSPQNCCPQLQEHSQQP--CKQYNLCHRRSQDPFGDLLKKLMDQIHDH 243 L A+ T + P LQ + K P +L ++ + + D+ Sbjct 39 RDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDY 98 Query 244 LEMPELSRK--FGTQMYEQQVVKLSEAAALAGLQEQRVYALH-----LRRYNDALLIHDT 296 + + FG Q++KL + R+ L + L++ + Sbjct 99 SKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEA 158 Query 297 VRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKL----- 351 R +D + + D R +TK A F D LA H P ++ Sbjct 159 DRMLD-MGFIHDI--RRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNT 215 Query 352 --------------EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD 397 + ++L N + ++FTRT+ A+ L L + Sbjct 216 ASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKD------- 268 Query 398 IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG 457 G +++ + +Q + + F+ G + +LVAT +A GLDI VV Y Sbjct 269 -------GIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYE 321 Query 458 LLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQ 511 L V GR RA + A + +L R++ + + A+ + Sbjct 322 LPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYE 377 Score = 54.8 bits (130), Expect = 2e-06, Method: Composition-based stats. Identities = 30/137 (22%), Positives = 49/137 (36%), Gaps = 12/137 (9%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTR-AAAYVAKRHLETVDGAK------VVVLVNRVHL 59 Q + I LEG++++ TG GKT + + + AK ++L L Sbjct 28 QQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTREL 87 Query 60 VTQHGEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEE 118 Q GE R + G + L D+L+ T L E + Sbjct 88 AAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLD----LEHQN 143 Query 119 HVELTVFSLIVVDECHH 135 V+L ++V+DE Sbjct 144 AVKLDQVEILVLDEADR 160 >sp|Q6CT49|PRP28_KLULA Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=PRP28 PE=3 SV=1 Length=539 Score = 124 bits (312), Expect = 9e-29, Method: Composition-based stats. Identities = 66/373 (18%), Positives = 138/373 (37%), Gaps = 38/373 (10%) Query 160 LPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYN 219 LP ++ L P +K DG + VL L Q+ + + ++PC + Sbjct 194 LPILIKLHGIPPLNSITKHDGPLALVLAPTRELAQQI----QHEGQSITKLWKRPCNIVS 249 Query 220 LCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRV 279 + G L+++ + D ++ + + ++ L + L + ++ Sbjct 250 IVG-------GHSLEEISANLRDGCDILVATPGRLLDCLDSHLLFLKQVNTLVLDEADKM 302 Query 280 YALHLR-RYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNEL 338 + L +T+ + F L + ++ K ++ Sbjct 303 IDFGFEDQLTTILAKTETISNRQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEESKPKI 362 Query 339 AHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI 398 + + P+ E KIL + F + IIF +++A L L++ Sbjct 363 KQIVRYVPD---EEEKLKILVKDFLPNYKAPIIIFINYKRTADWLFDKLRE------ARF 413 Query 399 RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL 458 RA L G+ +Q ++ + ++G +++L+AT VA G+DIP+ ++VV Sbjct 414 RATTLHGSK--------SQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQF 465 Query 459 LTNEISMVQARGR-ARADQSVYA--FVATEGSRELKRELINEAL------ETLMEQAVAA 509 + S V GR RA ++ A F+ E +L + E + + + Sbjct 466 PKSFDSFVHRVGRTGRAGKTGTALTFLTEEEDHSAMAKLFDYVKKNDFTGENYISKEAMS 525 Query 510 VQKMDQAEYQAKI 522 +D++ Y+ I Sbjct 526 KYNVDKSSYKPII 538 Score = 55.2 bits (131), Expect = 1e-06, Method: Composition-based stats. Identities = 26/125 (21%), Positives = 41/125 (33%), Gaps = 16/125 (13%) Query 21 IIWLPTGAGKTRAAAYVA---------KRHLETVDGAKVVVLVNRVHLVTQ-HGE--EFR 68 I TG+GKT A + DG +VL L Q E Sbjct 179 IGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLALVLAPTRELAQQIQHEGQSIT 238 Query 69 RMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLI 128 ++ + ++ G +L D+L+ T L L S + L + + Sbjct 239 KLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRLLDCLDSHL----LFLKQVNTL 294 Query 129 VVDEC 133 V+DE Sbjct 295 VLDEA 299 >sp|P42305|DBPA_BACSU ATP-dependent RNA helicase DbpA OS=Bacillus subtilis (strain 168) OX=224308 GN=dbpA PE=1 SV=2 Length=479 Score = 123 bits (309), Expect = 1e-28, Method: Composition-based stats. Identities = 73/419 (17%), Positives = 141/419 (34%), Gaps = 63/419 (15%) Query 228 PFGDLLKKLMDQIHDH--LEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR 285 P +L ++ + I + + + + FG +++Q +L + + + RV H+ Sbjct 78 PTRELAVQVKEDITNIGRFKRIKATAVFGKSSFDKQKAELKQKSHIVVGTPGRVLD-HIE 136 Query 286 RYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----RKNELAHL 341 + L + +D + + E V R LF +L+ Sbjct 137 KGTLPLDRLSYL-VIDEADEMLNMGFIEQVEAIIKHLPTERTTMLFSATLPQDIEKLSRQ 195 Query 342 ATHGPENPKL-------------------EMLEKILQRQFSSSNSPRGIIFTRTRQSAHS 382 PE+ ++ E +L+ + N IIF RT++ + Sbjct 196 YMQNPEHIEVKAAGLTTRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQ 255 Query 383 LLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAE 442 L L +G M Q D+ +V+ +F+ G LVAT VA Sbjct 256 LTDELDD--------------LGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAA 301 Query 443 EGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALET 501 G+DI + ++V+ Y L + S V GR RA A KR L + +E Sbjct 302 RGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFE--KRFLAD--IEE 357 Query 502 LMEQAVAAVQKMDQAEYQAKIRDL-----QQAALTKRAAQAAQRE------NQRQQFPVE 550 + + ++ Q E K + + K ++ ++ N ++ + Sbjct 358 YIGFEIQKIEAPSQEEVARKKPEFLAKLNDRPESKKDKSEELNKDIMKLYFNGGKKKKIR 417 Query 551 HVQLLCINCMVAVGHGSDLRKVEGTHHVNVNPNFSNYYNVSRDPVVINKVFKDWKPGGV 609 V + + D+ + ++ + P V+ KV K+ G Sbjct 418 AVDFVGTIAKIDGVSADDIGII-----TIMDNASYVEILNGKGPHVL-KVMKNTTVKGK 470 Score = 61.0 bits (146), Expect = 2e-08, Method: Composition-based stats. Identities = 27/131 (21%), Positives = 49/131 (37%), Gaps = 10/131 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTR---AAAYVAKRHLETVDGAKVVVLVNRVHLVTQH 63 Q VI ALE K++++ TG+GKT E + ++L L Q Sbjct 29 QQSVIPAALERKDLVVKSQTGSGKTASFGIPLCELANWDENKP--QALILTPTRELAVQV 86 Query 64 GEEFRRMLDGRW-TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 E+ + + T + G L + +++ T + + E+ + L Sbjct 87 KEDITNIGRFKRIKATAVFGKSSFDKQKAELKQKSHIVVGTPGRVLDHI----EKGTLPL 142 Query 123 TVFSLIVVDEC 133 S +V+DE Sbjct 143 DRLSYLVIDEA 153 >sp|Q9P7C7|PRP11_SCHPO Pre-mRNA-processing ATP-dependent RNA helicase prp11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=prp11 PE=1 SV=1 Length=1014 Score = 126 bits (316), Expect = 1e-28, Method: Composition-based stats. Identities = 67/394 (17%), Positives = 127/394 (32%), Gaps = 54/394 (14%) Query 212 QQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAA 269 Q+P K P +L ++ + L++ + +G + Q+ L A Sbjct 483 QRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGA 542 Query 270 ALAGLQEQRVYALHLRRYNDALLIHDTVRAV-DALAALQDFYHREHVTKTQILCAERRLL 328 + R+ + +H V D + D V + R Sbjct 543 EIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNIRPDRQT 602 Query 329 ALFDDR---------------------------KNELAHLATHGPENPKLEMLEKILQRQ 361 LF +E+ + PE K L ++L Sbjct 603 VLFSATFPRAMEALARKVLKKPVEITVGGRSVVASEVEQIVEVRPEESKFSRLLELLGEL 662 Query 362 FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ 421 +++ R ++F ++SA +LL L ++ G ++S Q D+ Sbjct 663 YNNQLDVRTLVFVDRQESADALLSDLMKR--------------GYTSNSIHGGKDQHDRD 708 Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYA 480 I ++ G ++L+ATSV GLD+ +VV Y + V GR RA + A Sbjct 709 STISDYKAGVFDVLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVA 768 Query 481 FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR 540 +E I +AL+ + +Q + + ++AA + R Sbjct 769 VTFITPEQEKYAVDIAKALKMSKQPVPKELQTLASQFLEKVKAGKEKAAGGGFGGKGLSR 828 Query 541 ENQRQQFPVEHVQLLCINCMVAVGHGSDLRKVEG 574 ++ + + + +G D VE Sbjct 829 LDETRNAERKMQR---------KAYGEDEEDVET 853 Score = 56.3 bits (134), Expect = 8e-07, Method: Composition-based stats. Identities = 27/137 (20%), Positives = 50/137 (36%), Gaps = 10/137 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYV-AKRHLETVDGAK------VVVLVNRVHL 59 Q + I G+++I TG+GKT A + RH++ K +++ L Sbjct 445 QAQAIPAITSGRDVIGVAKTGSGKT-IAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTREL 503 Query 60 VTQHGEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEE 118 Q E + L G + L R ++++CT + L++ Sbjct 504 AVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEIVVCTPGRMIDVLSANAGR- 562 Query 119 HVELTVFSLIVVDECHH 135 L + +V+DE Sbjct 563 VTNLHRCTYLVLDEADR 579 >sp|P34689|GLH1_CAEEL ATP-dependent RNA helicase glh-1 OS=Caenorhabditis elegans OX=6239 GN=glh-1 PE=1 SV=3 Length=763 Score = 126 bits (315), Expect = 1e-28, Method: Composition-based stats. Identities = 47/264 (18%), Positives = 85/264 (32%), Gaps = 56/264 (21%) Query 269 AALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLL 328 + E+ L R+ ++ + R +DA+ D V + E R Sbjct 477 GRIKHFCEEGTIKLDKCRF---FVLDEADRMIDAMGFGTDI--ETIVNYDSMPRKENRQT 531 Query 329 ALFDD----------------------------RKNELAHLATHGPENPKLEMLEKIL-- 358 +F + + K + L ++L Sbjct 532 LMFSATFPDSVQEAARAFLRENYVMIAIDKIGAANKCVLQEFERCERSEKKDKLLELLGI 591 Query 359 -QRQFSSSNSP-----RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQS 412 +++ S + ++F R A +L L Q Sbjct 592 DIDSYTTEKSAEVYTKKTMVFVSQRAMADTLASILSSAQVPAIT--------------IH 637 Query 413 THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR- 471 QR++ E +++F++G+ +L+AT+VAE GLDI + V+ Y + N + GR Sbjct 638 GAREQRERSEALRQFRNGSKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRT 697 Query 472 ARADQSVYAFVATEGSRELKRELI 495 R S A L EL+ Sbjct 698 GRVGNSGRATSFISEDCSLLSELV 721 Score = 44.4 bits (103), Expect = 0.003, Method: Composition-based stats. Identities = 45/301 (15%), Positives = 95/301 (32%), Gaps = 25/301 (8%) Query 2 ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA------------K 49 ++ Y ++ + I+ TG+GKT AA++ +D + Sbjct 366 PIQQYALPLVHQGYD---IMACAQTGSGKT--AAFLLPIMTRLIDDNNLNTAGEGGCYPR 420 Query 50 VVVLVNRVHLVTQHGEEFRRMLDGR-WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQ 108 ++L L Q E R+ + + G + G + + +++ T Sbjct 421 CIILTPTRELADQIYNEGRKFAYQTMMEIKPVYGGLAVGYNKGQIEKGATIIVGT----V 476 Query 109 MALTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTA 168 + EE ++L V+DE + + + + Q L +A Sbjct 477 GRIKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDIETIVNYDSMPRKENRQTLMFSA 536 Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 + S + A + + + I + C Q E ++ K+ L D Sbjct 537 T---FPDSVQEAARAFLRENYVMIAIDKIGAANKCVLQEFERCERSEKKDKLLELLGIDI 593 Query 229 FGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN 288 +K + + R + A + G +EQR + LR++ Sbjct 594 DSYTTEKSAEVYTKKTMVFVSQRAMADTLASILSSAQVPAITIHGAREQRERSEALRQFR 653 Query 289 D 289 + Sbjct 654 N 654 >sp|Q6FM43|PRP28_CANGA Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=PRP28 PE=3 SV=1 Length=582 Score = 124 bits (312), Expect = 1e-28, Method: Composition-based stats. Identities = 70/379 (18%), Positives = 143/379 (38%), Gaps = 53/379 (14%) Query 145 IMSQYLELKLQRAQPLPQ-VLGL--TAS--------PGTGGASKLDGAINHVLQLCANLD 193 I + + + +P+ +LG+ T S P L ++ L L Sbjct 197 IQRITIPNAISSNKSVPRDILGIASTGSGKTLAFSIPILARLDALPARPVNLKTLDGPLA 256 Query 194 TWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPF----GDLLKKLMDQIHDHLEMPEL 249 + + + Q+ + + ++++ + G + + + + ++ Sbjct 257 LVLVPT-RELAQQISQEINR--LLSAWENKKNLNAVSIVGGHSMSDISHTLRNGCDILIA 313 Query 250 SRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDF 309 + + + +V L++ +L + R+ L ++L H D LAA Q Sbjct 314 TPGRLLDVLDNHLVVLNKIQSLVLDEADRMIDLGFEDQMKSILSHLMA---DELAARQTM 370 Query 310 YHREHVTKTQILCAERRLL--------ALFDDRKNELAHLATH-GPENPKLEMLEKILQR 360 ++ + A+ L + +D K + + H G ++ KL L+ L + Sbjct 371 LFTATLSSSVESIAKGYLKNPLHVSVGSRWDSDKPLITQVVRHTGDDDKKLSFLKDDLIK 430 Query 361 QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ 420 N IIF +++A L L L + + T+ +Q + Sbjct 431 -----NGLPAIIFINYKETADWLTLRLSDRFNIVTL---------------HGSKSQSQR 470 Query 421 QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVY 479 + IQK + GT N+L+AT+VA GLDIP +VV + + + GR RA ++ Sbjct 471 ESAIQKLKSGTANVLIATNVAARGLDIPDVALVVNFQMSKKFDDYIHRIGRTGRAGKTGI 530 Query 480 A--FVATEGSRELKRELIN 496 A ++ E +L ++L Sbjct 531 AVTYLTGEEDPQLIKQLAK 549 Score = 49.0 bits (115), Expect = 1e-04, Method: Composition-based stats. Identities = 63/369 (17%), Positives = 113/369 (31%), Gaps = 38/369 (10%) Query 26 TGAGKTR---AAAYVAKR-------HLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRW 75 TG+GKT +L+T+DG +VLV L Q +E R+L Sbjct 222 TGSGKTLAFSIPILARLDALPARPVNLKTLDGPLALVLVPTRELAQQISQEINRLLSAWE 281 Query 76 TVTTLS-----GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV 130 L+ G L D+LI T L L + V L +V+ Sbjct 282 NKKNLNAVSIVGGHSMSDISHTLRNGCDILIATPGRLLDVLDNHL----VVLNKIQSLVL 337 Query 131 DECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCA 190 DE D + M L + Q + TA+ + S G + + L + Sbjct 338 DEADRMI-DLGFEDQMKSILSHLMADELAARQTMLFTATLSSSVESIAKGYLKNPLHV-- 394 Query 191 NLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELS 250 ++ + ++ K L ++ ++ + D L LS Sbjct 395 SVGSRWDSDKPLITQVVRHTGDDDKKLSFLKDDLIKNGLPAIIFINYKETADWL-TLRLS 453 Query 251 RKF--------GTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDA 302 +F +Q + ++ ++ L V A L + AL+++ Sbjct 454 DRFNIVTLHGSKSQSQRESAIQKLKSGTANVLIATNVAARGLDIPDVALVVN-----FQM 508 Query 303 LAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATH--GPENPKLEMLEKILQR 360 D+ HR T ++ + LA + + K + + Sbjct 509 SKKFDDYIHRIGRTGRAGKTGIAVTYLTGEEDPQLIKQLAKYVKDVDPNKENDFPEECAK 568 Query 361 QFSSSNSPR 369 F + R Sbjct 569 HFGIVSETR 577 >sp|Q54QS3|DDX3_DICDI Probable ATP-dependent RNA helicase ddx3 OS=Dictyostelium discoideum OX=44689 GN=ddx3 PE=3 SV=1 Length=712 Score = 125 bits (314), Expect = 1e-28, Method: Composition-based stats. Identities = 57/334 (17%), Positives = 119/334 (36%), Gaps = 58/334 (17%) Query 228 PFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR 285 P +L +++ D+ + +S +G Q+ +L + R+ L +R Sbjct 338 PTRELAQQIFDEANKFSYGSPVSSVVIYGGAEVFHQINELDRGCDILVATTGRLVDLLMR 397 Query 286 RYND-----ALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFD----DRKN 336 L++ + R +D Q R+ +++ + R +F + Sbjct 398 GRVSLSKIKYLVLDEADRMLDMGFEPQ---IRQIISEFDMPGCRDRQTLMFSATFPKQIQ 454 Query 337 ELAHLATHGPENPKLEMLEK-------------------ILQRQFSSSNSPRGIIFTRTR 377 LA + K+ ++ +L + +IF T+ Sbjct 455 NLAADFLYNYIFLKVGVVGTTQNITQRIEYVVEEDKNSYLLDYLSGLKSDGLCLIFVETK 514 Query 378 QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA 437 +S +L +L Q+ T +TQ +++ +Q F+ LVA Sbjct 515 RSCDTLTYFLNQRNFPTT--------------CIHGDLTQPERENALQSFRSFATPFLVA 560 Query 438 TSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELI 495 T +A GL I + N+V+ + L T+ V GR RA + A E ++ + EL+ Sbjct 561 TDIASRGLHIGNVNLVINFDLPTDIHIYVHRIGRTGRAGKKGLAISFFNEKNKPVGAELL 620 Query 496 NEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAA 529 LM+ + + ++ + +L+ + Sbjct 621 -----KLMKASNQDIPDW----FEKMVHNLRMSK 645 Score = 50.2 bits (118), Expect = 6e-05, Method: Composition-based stats. Identities = 41/233 (18%), Positives = 78/233 (33%), Gaps = 36/233 (15%) Query 15 LEGKNIIIWLPTGAGKTRAAAY---VAKRHLETVDGA--------------KVVVLVNRV 57 L+ ++++ TG+GKT AA ++ L+ A + +VL Sbjct 282 LKNRDLMACAQTGSGKT-AAFLFPIISGILLDGAPEAPPAYKPGVPRAACPRALVLAPTR 340 Query 58 HLVTQHGEEFRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE 116 L Q +E + + + G L R D+L+ T L L Sbjct 341 ELAQQIFDEANKFSYGSPVSSVVIYGGAEVFHQINELDRGCDILVATTGRLVDLLM---- 396 Query 117 EEHVELTVFSLIVVDECHH---THKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS-PGT 172 V L+ +V+DE + I+S++ + Q L +A+ P Sbjct 397 RGRVSLSKIKYLVLDEADRMLDMGFEPQIRQIISEFDMPGCRDRQT----LMFSATFPKQ 452 Query 173 GGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRS 225 D N++ L + + QN +++ ++ Y L + Sbjct 453 IQNLAADFLYNYIF-----LKVGVVGTTQNITQRIEYVVEEDKNSYLLDYLSG 500 >sp|Q6C799|DBP8_YARLI ATP-dependent RNA helicase DBP8 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DBP8 PE=3 SV=1 Length=442 Score = 122 bits (306), Expect = 1e-28, Method: Composition-based stats. Identities = 47/257 (18%), Positives = 85/257 (33%), Gaps = 18/257 (7%) Query 304 AALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFS 363 A + D + +A + L P + L IL Sbjct 188 ATVTDAVRALKDRTGEKGPPFIHEIASDIAVPSTLTQSYLFLPGYVREAYLWAILTH--P 245 Query 364 SSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEV 423 + IIF Q+A +L L +S + M Q+++ Sbjct 246 DNEKKSAIIFVNRTQTAETLRRMLMALD--------------VKTASLHSEMRQQERVNA 291 Query 424 IQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF- 481 + +F+ +LVAT VA GLDIP +V+ + L + + GR ARA + + Sbjct 292 LGRFRAQAARVLVATDVASRGLDIPTVEMVINFDLPADADDYIHRVGRTARAGRKGQSVS 351 Query 482 VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRE 541 + TE + + + + K+ + +QA L A +R+ Sbjct 352 LVTERDVTRVTNIEERVGTKMEKYDLIEDDKVVEEYLTPASTAKRQAVLDMEAENFGERK 411 Query 542 NQRQQFPVEHVQLLCIN 558 +++ V + N Sbjct 412 RIQRKKAGLDVDMKSKN 428 Score = 47.1 bits (110), Expect = 4e-04, Method: Composition-based stats. Identities = 27/123 (22%), Positives = 43/123 (35%), Gaps = 2/123 (2%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKV-VVLVNRVHLVTQHGEEFRRML-D 72 ++GK+ I TG+GKT A A +VL L Q E+F + + Sbjct 36 MKGKDCIGGARTGSGKTIAFAAPMLAEWSKDPCGIFGLVLTPTRELAIQIAEQFTALGAN 95 Query 73 GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDE 132 V + G + L + +I T L + S E+ +V+DE Sbjct 96 MNIRVALIYGGVDMVKQSLELQKMPHFVIATPGRLADHIRSSGEDTIRGFRRVRYVVMDE 155 Query 133 CHH 135 Sbjct 156 ADR 158 >sp|Q65N62|CSHA_BACLD DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / CCUG 7422 / NBRC 12200 / NCIMB 9375 / NCTC 10341 / NRRL NRS-1264 / Gibson 46) OX=279010 GN=cshA PE=3 SV=1 Length=487 Score = 123 bits (308), Expect = 2e-28, Method: Composition-based stats. Identities = 60/391 (15%), Positives = 120/391 (31%), Gaps = 57/391 (15%) Query 168 ASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQD 227 A+P L A V+ ++ S R Sbjct 26 ATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIPLVEKINPESPNIQAIVIAPTRELAI 85 Query 228 PFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR- 286 + L K+ + + +G Q +Q+ L + + R+ RR Sbjct 86 QVSEELYKI-----GQDKRARVLPIYGGQDIGRQIRALKKNPHIIVGTPGRLLDHINRRT 140 Query 287 ------------YNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALF--- 331 D +L + ++++ + H+ + + +R+ F Sbjct 141 MRLQTVNTVVLDEADEMLNMGFIEDIESILSNVPAEHQTLLFSATMPAPIKRIAERFMTN 200 Query 332 ---------DDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHS 382 + + + E K + L ++L Q + I+F RT++ Sbjct 201 PEHVKVKAKEMTVSNIQQFYLEVHERKKFDTLTRLLDIQ----SPELAIVFGRTKRRVDE 256 Query 383 LLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAE 442 L L L G +TQ + ++KF+ G + +LVAT VA Sbjct 257 LTEALN--------------LRGYTAEGIHGDLTQAKRMVALRKFKQGAIEVLVATDVAA 302 Query 443 EGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVAT--------EGSRELKRE 493 GLDI V + + + S V GR RA ++ A + + Sbjct 303 RGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKDMLRAIEQTTKR 362 Query 494 LINEALETLMEQAVAAVQKMDQAEYQAKIRD 524 ++ +++A+ Q++ + I + Sbjct 363 KMDRMKAPTLDEAIEGQQQVTVDRIRTIIEE 393 Score = 48.6 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 27/129 (21%), Positives = 48/129 (37%), Gaps = 6/129 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q + I L K++I TG GKT A + ++ + +V+ L Q E Sbjct 30 QAQTIPLGLANKDVIGQAQTGTGKTAAFGIPLVEKINPESPNIQAIVIAPTRELAIQVSE 89 Query 66 EFRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 E ++ D R V + G L + +++ T L + + L Sbjct 90 ELYKIGQDKRARVLPIYGGQDIGRQIRALKKNPHIIVGTPGRLLDHINRRT----MRLQT 145 Query 125 FSLIVVDEC 133 + +V+DE Sbjct 146 VNTVVLDEA 154 >sp|Q8Y8N0|CSHA_LISMO ATP-dependent RNA helicase CshA OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) OX=169963 GN=cshA PE=2 SV=1 Length=520 Score = 123 bits (309), Expect = 2e-28, Method: Composition-based stats. Identities = 66/356 (19%), Positives = 126/356 (35%), Gaps = 45/356 (13%) Query 208 QEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHD--HLEMPELSRKFGTQMYEQQVVKL 265 + ++ N P +L ++ ++++ + + + +G +Q+ L Sbjct 58 LPMIHKIDQKSNNVQALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSL 117 Query 266 SEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAER 325 + + R+ H+ R L +T+ +A L + + T + + AER Sbjct 118 KKNPQIVVGTPGRILD-HINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAER 176 Query 326 RLL---ALFDDRKNELAHLATHGPE--NPKLEMLEKILQRQFSSSNSPR----------- 369 + L A D + H PE K + + +L QF + Sbjct 177 QTLLFSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLD 236 Query 370 ------GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEV 423 I+F RT++ L L + G +TQ + V Sbjct 237 VQAPELAIVFGRTKRRVDELSRALD--------------MRGYVAEGIHGDLTQAKRMSV 282 Query 424 IQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFV 482 ++KF++G +++LVAT VA GLDI V Y + + S V GR RA + A Sbjct 283 LRKFKEGKIDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAIT 342 Query 483 ATEGSRELKRELINEALETLMEQAVAAVQKMDQA---EYQAKIRDLQQAALTKRAA 535 + ++ E + M+ D+A + + +Q+A + A Sbjct 343 FVQPREMGYLRIVEETTKKRMQ--PLQAPTWDEAFAGQLRVATEKIQEAITEENLA 396 Score = 53.3 bits (126), Expect = 5e-06, Method: Composition-based stats. Identities = 24/122 (20%), Positives = 46/122 (38%), Gaps = 6/122 (5%) Query 14 ALEGKNIIIWLPTGAGKTRAAAYVAKRHLETV-DGAKVVVLVNRVHLVTQHGEEFRRML- 71 LEGK++I TG GKT A ++ + + +++ L Q EE ++ Sbjct 36 GLEGKDLIGQAQTGTGKTAAFGLPMIHKIDQKSNNVQALIIAPTRELAIQVSEELYKLSY 95 Query 72 DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVD 131 D V + G L + +++ T + + ++L +V+D Sbjct 96 DKHVRVLAVYGGSDISRQIRSLKKNPQIVVGTPGRILDHINRRT----LKLDHVETLVLD 151 Query 132 EC 133 E Sbjct 152 EA 153 >sp|P09052|VASA1_DROME ATP-dependent RNA helicase vasa OS=Drosophila melanogaster OX=7227 GN=vas PE=1 SV=3 Length=661 Score = 124 bits (312), Expect = 2e-28, Method: Composition-based stats. Identities = 35/150 (23%), Positives = 63/150 (42%), Gaps = 22/150 (15%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K L +IL Q I+F T++ A L +L +++ T Sbjct 477 KRSKLIEILSEQADG-----TIVFVETKRGADFLASFLSEKEFPTT-------------- 517 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 S Q +++ ++ F++G++ +L+ATSVA GLDI + V+ Y + + V Sbjct 518 SIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRI 577 Query 470 GRARA---DQSVYAFVATEGSRELKRELIN 496 GR + +F E R + +L+ Sbjct 578 GRTGRVGNNGRATSFFDPEKDRAIAADLVK 607 Score = 52.9 bits (125), Expect = 9e-06, Method: Composition-based stats. Identities = 54/338 (16%), Positives = 116/338 (34%), Gaps = 35/338 (10%) Query 16 EGKNIIIWLPTGAGKTRAAAYVAK-------RHLETVDGAKVVVLVNRVHLVTQHGEEFR 68 G++++ TG+GKT A LE +VV++ L Q E R Sbjct 281 SGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRP-QVVIVSPTRELAIQIFNEAR 339 Query 69 RMLDGRW-TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSL 127 + + + + G R + R ++I T L + + + Sbjct 340 KFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFV----DRTFITFEDTRF 395 Query 128 IVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQ 187 +V+DE D ++ M + + R P Q L +A+ + + + Sbjct 396 VVLDEADR-MLDMGFSEDMRRIMTHVTMR--PEHQTLMFSATFPEEIQRMAGEFLKNYVF 452 Query 188 LCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMP 247 + + + ++ +++++ L S+ G ++ + D L Sbjct 453 VAIGIVGGACSDVKQTIYEVNKYAKR----SKLIEILSEQADGTIVFVETKRGADFLASF 508 Query 248 ELSRKFGT--------QMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRA 299 ++F T Q +Q ++ + ++ L V + L N +I+ Sbjct 509 LSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVIN----- 563 Query 300 VDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNE 337 D + + D+ HR + +T + R + FD K+ Sbjct 564 YDMPSKIDDYVHR--IGRTGRVGNNGRATSFFDPEKDR 599 >sp|A5DQF1|RRP3_PICGU ATP-dependent rRNA helicase RRP3 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=RRP3 PE=3 SV=2 Length=475 Score = 123 bits (308), Expect = 2e-28, Method: Composition-based stats. Identities = 64/360 (18%), Positives = 119/360 (33%), Gaps = 49/360 (14%) Query 216 KQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKF---GTQMYEQQVVKLSEAAALA 272 + + P +L ++ + D L R G Q L + Sbjct 128 EAQRPYYALVLAPTRELAYQI-KETFDALGSGMGVRSVCIVGGMDMMDQARDLMRKPHIL 186 Query 273 GLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFD 332 R+ HL L +D L D + K + +R LF Sbjct 187 VATPGRI-MDHLENTKGFSLKSLQYLVMDEADRLLDMDFGPALDKILKVIPTKRTTYLFS 245 Query 333 ----DRKNELAHLATHGPE----NPKLEMLEKILQRQFSSSNSPR--------------- 369 ++ +L + H P + K + + ++Q S+ + Sbjct 246 ATMTNKIAKLQRASLHEPVKVAVSNKYQTADNLVQSMMLVSDGYKNTFLIHLLNEFMGKS 305 Query 370 GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD 429 I+FTRT L ++G +TQ + + KF+ Sbjct 306 IIVFTRTCAHTQRSTLL--------------ARILGFSAVPLHGQLTQSQRLGSLNKFKS 351 Query 430 GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGS 487 G N+L+AT VA GLDIP +VV+ Y + T+ + + GR ARA +S + + T+ Sbjct 352 GKANILIATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGKSGKSISLVTQYD 411 Query 488 RELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQF 547 E + +E+++ + + A + +A+ E + ++ Sbjct 412 LE-----MYLRIESVLGFKLPKDPSPPRDVLNALHVHVDRASAEAIKQTKDFHEKRTKKK 466 Score = 57.5 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 33/124 (27%), Positives = 47/124 (38%), Gaps = 5/124 (4%) Query 14 ALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLD 72 ALEGK+II TG+GKT A A + + E +VL L Q E F + Sbjct 98 ALEGKDIIGLAQTGSGKTAAFAIPILQSLWEAQRPYYALVLAPTRELAYQIKETFDALGS 157 Query 73 G-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVD 131 G + G M L R +L+ T + L + + L +V+D Sbjct 158 GMGVRSVCIVGGMDMMDQARDLMRKPHILVATPGRIMDHLENTKG---FSLKSLQYLVMD 214 Query 132 ECHH 135 E Sbjct 215 EADR 218 >sp|A3LRW2|DBP3_PICST ATP-dependent RNA helicase DBP3 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) OX=322104 GN=DBP3 PE=3 SV=1 Length=526 Score = 123 bits (309), Expect = 2e-28, Method: Composition-based stats. Identities = 42/195 (22%), Positives = 79/195 (41%), Gaps = 23/195 (12%) Query 350 KLEMLEKILQRQFSSSN-SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN 408 K + L +L++ S S + + +IF ++ A + L++ Sbjct 344 KEKKLLGLLRQYQSGSKKNDKVLIFALYKKEATRIEGLLRRNS--------------YNV 389 Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 ++ ++Q+ + + F+ G +LL+AT VA GLDIP+ VV+ V Sbjct 390 AAIHGDLSQQQRTNALNSFKKGESSLLLATDVAARGLDIPNVKVVINLTFPLTVEDYVHR 449 Query 469 RGR-ARADQSVYAF-VATEGSRELKRELI------NEALETLMEQAVAAVQKMDQAEYQA 520 GR RA Q+ A + TE + L L+ N+ + + + +K + Y A Sbjct 450 IGRTGRAGQTGTAHTLFTEHEKHLSGALMNILRGANQPVPDELLKFGGHTKKKAHSAYGA 509 Query 521 KIRDLQQAALTKRAA 535 +D+ K+ Sbjct 510 FFKDVDMTKTAKKIK 524 Score = 50.6 bits (119), Expect = 4e-05, Method: Composition-based stats. Identities = 23/123 (19%), Positives = 41/123 (33%), Gaps = 6/123 (5%) Query 15 LEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVV-LVNRVHLVTQHGEEFRRMLD 72 L GK++I TG+GKT A L V+ + L +Q + + Sbjct 151 LSGKDVIGVAETGSGKTFAFGVPAINNILTLGKSGLSVLCISPTRELASQIYDNLVDLTS 210 Query 73 GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDE 132 P+ + ++++ T L + E+ V L +V+DE Sbjct 211 NTNVKCVCVYGGVPKHDQVKNLKNANVVVATPGRLLDLI----EDGAVNLGTVDYLVLDE 266 Query 133 CHH 135 Sbjct 267 ADR 269 >sp|Q9ZRZ8|RH28_ARATH DEAD-box ATP-dependent RNA helicase 28 OS=Arabidopsis thaliana OX=3702 GN=RH28 PE=2 SV=1 Length=789 Score = 125 bits (313), Expect = 2e-28, Method: Composition-based stats. Identities = 77/386 (20%), Positives = 138/386 (36%), Gaps = 46/386 (12%) Query 186 LQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLE 245 LCA+ T + P L+ +P K+ P +L ++ I + + Sbjct 205 RDLCASAITGSGKTAAFALPTLERLLFRP-KRVFATRVLILTPTRELAVQIHSMIQNLAQ 263 Query 246 MPELS--RKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDAL 303 ++ G +Q V L + R+ HLR L V +D Sbjct 264 FTDIKCGLIVGGLSVREQEVVLRSMPDIVVATPGRMID-HLRNSMSVDLDDLAVLILDEA 322 Query 304 AALQDFYHREHVTKTQILCAERRLLALFD----DRKNELAHLATHGP------------- 346 L +T+ LC +RR LF + EL L+ + P Sbjct 323 DRLLQTGFATEITELVRLCPKRRQTMLFSATMTEEVKELVKLSLNKPLRLSADPSARRPP 382 Query 347 ----ENPKLEMLEK-----ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD 397 E ++ + +L + + + IIF+ T+Q+AH L + Sbjct 383 GLTEEVVRIRRTREANQEAVLLSLCTRTFKSKVIIFSGTKQAAHRLKILFG--------- 433 Query 398 IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG 457 L G + ++TQ + + ++ F+ ++ L+AT VA GLDI V+ Y Sbjct 434 -----LAGLKAAELHGNLTQAQRLDSLELFRKQEVDFLIATDVAARGLDIIGVQTVINYA 488 Query 458 LLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQ 515 S V GR ARA + YA T+ R L + + + L + + + Sbjct 489 CPREIDSYVHRVGRTARAGREGYAVTFVTDSDRSLLKVIAKKVGSKLKSRVIPEQSIVKW 548 Query 516 AEYQAKIRDLQQAALTKRAAQAAQRE 541 ++ ++ D A ++ + A R+ Sbjct 549 SQIIDEMEDQYSAVISAERDERALRK 574 Score = 54.8 bits (130), Expect = 2e-06, Method: Composition-based stats. Identities = 33/201 (16%), Positives = 67/201 (33%), Gaps = 13/201 (6%) Query 14 ALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA----KVVVLVNRVHLVTQHGEEFRR 69 AL G+++ TG+GKT A A L +V++L L Q + Sbjct 201 ALTGRDLCASAITGSGKTAAFALPTLERLLFRPKRVFATRVLILTPTRELAVQIHSMIQN 260 Query 70 MLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLI 128 + + G + R L D+++ T + L + V+L +++ Sbjct 261 LAQFTDIKCGLIVGGLSVREQEVVLRSMPDIVVATPGRMIDHLRNSMS---VDLDDLAVL 317 Query 129 VVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQL 188 ++DE + I +R L +A+ + ++N L+L Sbjct 318 ILDEADRLLQTGFATEITELVRLCPKRRQTML-----FSATMTEEVKELVKLSLNKPLRL 372 Query 189 CANLDTWCIMSPQNCCPQLQE 209 A+ +++ Sbjct 373 SADPSARRPPGLTEEVVRIRR 393 >sp|Q84UQ1|RH42_ORYSJ DEAD-box ATP-dependent RNA helicase 42 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0159900 PE=2 SV=1 Length=1049 Score = 125 bits (314), Expect = 2e-28, Method: Composition-based stats. Identities = 51/220 (23%), Positives = 86/220 (39%), Gaps = 19/220 (9%) Query 335 KNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQ 394 ++ L PEN + L ++L F + + ++F ++ SLL L Q Sbjct 642 NKDITQLVEVRPENERFFRLLELLGEWF---DKGKILVFVHSQDKCDSLLKDLFQ----- 693 Query 395 TVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV 454 G S Q D++ + F+ +LL+ATSVA GLD+ +VV Sbjct 694 ---------HGYPCLSLHGGKDQTDRESTLADFKSNVCSLLIATSVAARGLDVKELELVV 744 Query 455 RYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM 513 Y + + V GR RA + +A E + +ALE L EQAV K Sbjct 745 NYDVPNHYEDYVHRVGRTGRAGRKGFAVTFISEEEERYAPDLVKALE-LSEQAVPEDLKG 803 Query 514 DQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQ 553 + AK++ + A + + N+ + + + Sbjct 804 LADRFMAKVKQGTEQAHGTGYGGSGFKFNEEEDEARKSAK 843 Score = 61.0 bits (146), Expect = 3e-08, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 51/136 (38%), Gaps = 8/136 (6%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVD-----GAKV-VVLVNRVHLV 60 Q + + + G++ I TG+GKT A RH++ + +++ LV Sbjct 451 QAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHVKDQPAVVPGDGPIGLIMAPTRELV 510 Query 61 TQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 Q + ++ + G G L R ++++CT + L + + Sbjct 511 VQIHSDIKKFSKALGINCVAIYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSSGK-I 569 Query 120 VELTVFSLIVVDECHH 135 L + +V+DE Sbjct 570 TNLRRVTFLVMDEADR 585 >sp|Q6BZ77|DBP3_DEBHA ATP-dependent RNA helicase DBP3 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DBP3 PE=3 SV=1 Length=527 Score = 123 bits (308), Expect = 2e-28, Method: Composition-based stats. Identities = 44/212 (21%), Positives = 79/212 (37%), Gaps = 23/212 (11%) Query 333 DRKNELAHLATHGPENPKLEMLEKILQRQFSSSN-SPRGIIFTRTRQSAHSLLLWLQQQQ 391 + + K + L +L++ S SN + +IF ++ A + L + Sbjct 328 SANKRITQIVEVIEPYDKEKKLLSLLRKYQSGSNKDDKVLIFALYKKEATRIENLLVRNS 387 Query 392 GLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN 451 S+ ++Q+ + + F+ G LL+AT VA GLDIP+ Sbjct 388 --------------FKVSAVHGDLSQQQRTSALGAFKAGKTTLLLATDVAARGLDIPNVK 433 Query 452 VVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELI------NEALETLM 503 VV+ V GR RA Q+ A + TE + L L+ N+ + + Sbjct 434 VVINLTFPLTVEDYVHRIGRTGRAGQTGIAHTLFTEHEKHLSGALMNVLRGANQPVPDEL 493 Query 504 EQAVAAVQKMDQAEYQAKIRDLQQAALTKRAA 535 + +K + Y A +D+ K+ Sbjct 494 LKFGGHTKKKAHSAYGAFFKDVDMTKTAKKIK 525 Score = 54.4 bits (129), Expect = 2e-06, Method: Composition-based stats. Identities = 51/312 (16%), Positives = 97/312 (31%), Gaps = 27/312 (9%) Query 15 LEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGEEFRRML- 71 L GK++I TG+GKT A L KV+ + L Q + + Sbjct 152 LSGKDVIGVAETGSGKTFAFGVPAINNILTHDKKGLKVLCISPTRELALQIYDNLVDLTA 211 Query 72 DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVD 131 + + G + L R +++ T L L + L +V+D Sbjct 212 NTPLKCVAVYGGVSKHEQVSSL-RNASVVVATPGRLIDLLND----GALSLDSIEYLVLD 266 Query 132 ECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS-PGTGG-------ASKLDGAIN 183 E + + + ++ + Q L TA+ P S + +I Sbjct 267 EADRMLEKG-FEQDIKSVMQQTNHANR---QTLMFTATWPKEVRELASTFMNSPVKVSIG 322 Query 184 HVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDH 243 +L AN I+ + ++ K + ++ L+ L + Sbjct 323 DRNELSANKRITQIVEVIEPYDKEKKLLSLLRKYQSGSNKDD----KVLIFALYKKEATR 378 Query 244 LEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDAL 303 +E + F + + +AL + + L L V+ V L Sbjct 379 IENLLVRNSFKVSAVHGDLSQQQRTSALGAFKAGKTTLLLATDVAARGLDIPNVKVVINL 438 Query 304 AA---LQDFYHR 312 ++D+ HR Sbjct 439 TFPLTVEDYVHR 450 >sp|Q4P3U9|RRP3_USTMA ATP-dependent rRNA helicase RRP3 OS=Ustilago maydis (strain 521 / FGSC 9021) OX=237631 GN=RRP3 PE=3 SV=2 Length=561 Score = 123 bits (309), Expect = 2e-28, Method: Composition-based stats. Identities = 50/217 (23%), Positives = 88/217 (41%), Gaps = 27/217 (12%) Query 335 KNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQ 394 + L P K L + Q S I+FTRT + L + L+ Sbjct 325 VSTLKQHYMFMPFAHKDTYLVHLANEQAGHS----IIVFTRTVHDSQRLSILLR------ 374 Query 395 TVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV 454 L+G ++Q+ + + KF+ G ++LVAT VA GLDIP ++VV Sbjct 375 --------LLGFPAIPLHGQLSQQARLGALNKFKTGGRSILVATDVASRGLDIPAVDLVV 426 Query 455 RYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKREL-------INEALETLMEQ 505 Y + TN + GR ARA +S + + T+ EL + + + E ++ Sbjct 427 NYDIPTNSKDYIHRVGRTARAGRSGRSVTLVTQYDVELLQRIEAVIGLKMTEFPGGNDKE 486 Query 506 AVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQREN 542 AV + + ++A +R+L+ + ++ Sbjct 487 AVMLLSERVAEAHRAAVRELKDKGVGSAGGSGKRKRK 523 Score = 67.1 bits (162), Expect = 3e-10, Method: Composition-based stats. Identities = 66/389 (17%), Positives = 133/389 (34%), Gaps = 42/389 (11%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVV---LVNRVHL---V 60 Q + I AL+ +++I TG+GKT AA+ D K L L + Sbjct 141 QVKAIPEALQARDVIGLAQTGSGKT--AAFTIPILQALWDNPKPFFACVLAPTRELAYQI 198 Query 61 TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 +Q E + R DM ++ L++ +++ T LQ L + + Sbjct 199 SQQVEALGSTIGVRSATIVGGMDMMSQSI--ALSKRPHVIVATPGRLQDHLENTKG---F 253 Query 121 ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG 180 L +V+DE D + I+ + L+ + + + +A+ T A Sbjct 254 SLRGLQYLVMDEADRLL-DMDFGPIIDKLLQSIPRER----RTMLFSATMTTKVAKLQRA 308 Query 181 AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI 240 ++ + +++ + + + + + + +L + + G + + Sbjct 309 SLKNPVRVEVDTKYTTVSTLKQHYM-FMPFAHKDTYLVHLAN----EQAGHSIIVFTRTV 363 Query 241 HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV 300 HD + L R G +LS+ A L L + + + D + AV Sbjct 364 HDSQRLSILLRLLGF-PAIPLHGQLSQQARLGALNKFKTGGRSILVATDVASRGLDIPAV 422 Query 301 DALAAL------QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEML 354 D + +D+ HR V +T R + L EL ++E + Sbjct 423 DLVVNYDIPTNSKDYIHR--VGRTARAGRSGRSVTLVTQYDVELLQ---------RIEAV 471 Query 355 EKILQRQFSSSNSPR-GIIFTRTRQSAHS 382 + +F N ++ + AH Sbjct 472 IGLKMTEFPGGNDKEAVMLLSERVAEAHR 500 >sp|Q75EW9|RRP3_EREGS ATP-dependent rRNA helicase RRP3 OS=Eremothecium gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=RRP3 PE=3 SV=2 Length=486 Score = 122 bits (306), Expect = 3e-28, Method: Composition-based stats. Identities = 46/217 (21%), Positives = 86/217 (40%), Gaps = 33/217 (15%) Query 346 PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 P K L +L + I+FTRT+ +A + ++ A L G Sbjct 289 PGGLKNTFLIYLLNEFIGKT----TIVFTRTKANAERISGL------CNLLEFSATALHG 338 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465 + Q + + F+ G ++LVAT VA GLDIP ++V+ Y + + S Sbjct 339 --------DLNQNQRTGALDLFKAGKKSILVATDVAARGLDIPSVDLVINYDIPVDSKSY 390 Query 466 VQARGR-ARADQSVYAFVATEG-------------SRELKRELINEALETLMEQAVAAVQ 511 + GR ARA +S + ++L +E +++++ + +V Sbjct 391 IHRVGRTARAGRSGKSVSLVSQYDLELILRIEEVLGKKLPKENVDKSIVLSLRDSVDKAN 450 Query 512 KMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFP 548 E + ++ +Q R ++ A REN ++ Sbjct 451 GEVIMELNRRNKE-KQTRGKGRRSRTATRENMDKEEE 486 Score = 58.3 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 35/131 (27%), Positives = 49/131 (37%), Gaps = 5/131 (4%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q + I PAL+GK+II TG+GKT A A + R +L L Q E Sbjct 93 QSKAIPPALQGKDIIGLAQTGSGKTAAFAIPILNRLWHDQQPYYACILAPTRELAQQIKE 152 Query 66 EFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 F + T + G M L R ++I T L L + + L Sbjct 153 TFDSLGSLMGVRTTCIVGGMNMMDQARDLMRKPHIIIATPGRLMDHLENTKG---FALRK 209 Query 125 FSLIVVDECHH 135 +V+DE Sbjct 210 LQFLVMDEADR 220 >sp|Q6CT46|DBP3_KLULA ATP-dependent RNA helicase DBP3 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=DBP3 PE=3 SV=1 Length=504 Score = 122 bits (306), Expect = 3e-28, Method: Composition-based stats. Identities = 38/182 (21%), Positives = 74/182 (41%), Gaps = 22/182 (12%) Query 361 QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ 420 + + + +IF ++ A + L+ G ++ ++Q+ + Sbjct 334 HSGPTKNDKVLIFALYKKEASRVERNLK--------------YNGYDVAAIHGDLSQQQR 379 Query 421 QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVY 479 + + +F+ G NLL+AT VA GLDIP+ V+ V GR RA Q Sbjct 380 TQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGT 439 Query 480 AF-VATEGSRELKRELIN------EALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTK 532 A + TE + L L+N + + +++ +K + + Y A +D+ + K Sbjct 440 AHTLFTEQEKHLAGALVNVLNGAGQPVPEELKKFGTHTKKKEHSAYGAFFKDVDLSKKPK 499 Query 533 RA 534 + Sbjct 500 KI 501 Score = 57.1 bits (136), Expect = 4e-07, Method: Composition-based stats. Identities = 60/337 (18%), Positives = 110/337 (33%), Gaps = 23/337 (7%) Query 15 LEGKNIIIWLPTGAGKTRA----AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRM 70 L GK++I TG+GKT A A + KV+V+ L +Q + + Sbjct 127 LAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISPTRELASQIYDNLIVL 186 Query 71 LDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIV 129 D + G + L R +++ T L + EE V+L+ + +V Sbjct 187 TDACGLRSCCVYGGVPKDQQREDLRRS-QVVVATPGRLLDLI----EEGSVDLSHVNYLV 241 Query 130 VDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS-PGTGGASKLDGAINHVLQL 188 +DE + + + + + ++ Q L TA+ P V Sbjct 242 LDEADRMLEKG-FEEDIKKIIRQTRSTSR---QTLMFTATWPKEVRELASSFMSEPVKVS 297 Query 189 CANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPE 248 N D ++ + ++ K L + P + + E Sbjct 298 IGNRDELSANKRITQIVEVVDPFRKEKKLLELLKKYHSGPTKNDKVLIFALYKKEASRVE 357 Query 249 LSRKFGTQMYEQQVVKLSEAAALAGLQEQRV--YALHLRRYNDALLIH-DTVRAVDALAA 305 + K+ LS+ L E + L L A + V+ V L Sbjct 358 RNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTF 417 Query 306 ---LQDFYHREHVTKTQILCAERRLLALFDDRKNELA 339 ++D+ HR + +T LF +++ LA Sbjct 418 PLTVEDYVHR--IGRTGRAGQYGTAHTLFTEQEKHLA 452 >sp|Q5ACU6|RRP3_CANAL ATP-dependent rRNA helicase RRP3 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=RRP3 PE=3 SV=3 Length=534 Score = 122 bits (307), Expect = 3e-28, Method: Composition-based stats. Identities = 62/329 (19%), Positives = 113/329 (34%), Gaps = 47/329 (14%) Query 228 PFGDLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR 285 P +L ++ D L G Q L + R+ HL Sbjct 194 PTRELAFQIKDTFDALGSSMGLRSSCIVGGMDMMDQARDLMRKPHVIVATPGRI-MDHLE 252 Query 286 RYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFD----DRKNELAHL 341 L + +D L D + K + +R LF ++ +L Sbjct 253 HTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVIPIKRTTYLFSATMTNKIEKLQRA 312 Query 342 ATHGPE----NPKLEMLEKILQRQFSSSNSPR---------------GIIFTRTRQSAHS 382 + H P + K + + ++Q ++ + I+FTRT A Sbjct 313 SLHNPVRVAVSSKYQTADNLVQSMMLVNDGYKNTILIHLLNEFMGKSIIVFTRTVAHAQR 372 Query 383 LLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAE 442 L ++G ++Q + + KF+ N+LVAT VA Sbjct 373 TALL--------------ARILGFNAVPLHGQLSQSQRLGSLNKFKSNQANILVATDVAA 418 Query 443 EGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALE 500 GLDIP +VV+ Y + T+ + + GR ARA +S + + T+ E + +E Sbjct 419 RGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLE-----MYLRIE 473 Query 501 TLMEQAVAAVQKMDQAEYQAKIRDLQQAA 529 +++ + + K + A + +A Sbjct 474 SVLGKKLPKEDKPPKEVLDALHVHVDKAT 502 Score = 59.4 bits (142), Expect = 7e-08, Method: Composition-based stats. Identities = 33/133 (25%), Positives = 49/133 (37%), Gaps = 9/133 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQ--- 62 Q E I ALEGK+II TG+GKT A A + + +VL L Q Sbjct 145 QSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWHAQQPYFALVLAPTRELAFQIKD 204 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 + + R + DM +A L R +++ T + L + L Sbjct 205 TFDALGSSMGLRSSCIVGGMDMMDQAR--DLMRKPHVIVATPGRIMDHLEHTKG---FSL 259 Query 123 TVFSLIVVDECHH 135 +V+DE Sbjct 260 KNLKYLVMDEADR 272 >sp|P0CQ76|DBP2_CRYNJ ATP-dependent RNA helicase DBP2-A OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=DBP2 PE=3 SV=1 Length=540 Score = 122 bits (307), Expect = 4e-28, Method: Composition-based stats. Identities = 62/373 (17%), Positives = 126/373 (34%), Gaps = 53/373 (14%) Query 162 QVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQY-NL 220 + +G TA P + A++ L A +T + C P + + QP + Sbjct 126 RRMGFTA-PSSIQCQAWPMALSG-RDLVAIAETGSGKTISFCLPAMVHINAQPLLAPGDG 183 Query 221 CHRRSQDPFGDLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEAAALAGLQEQR 278 P +L ++ + + + +G Q+ L + R Sbjct 184 PIVLILAPTRELAVQIQTEATKFGQSSRIRNTAIYGGAPKGPQIRDLQRGVEICVATPGR 243 Query 279 VY------ALHLRRYNDALLIHDTVRAVD---------ALAALQDFYHREHVTKTQILCA 323 + +L+R L++ + R +D ++ ++ + T Sbjct 244 LIDMLETGKTNLKR-VTYLVMDEADRMLDMGFEPQIRKIVSQIRPDRQTLLFSATW-PKE 301 Query 324 ERRLLALFDDR-------------KNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRG 370 +RL F + +A + K L L++ S + + Sbjct 302 VQRLAMDFLHDFIQVNIGSLDLTANHNVAQHVEVCTDFDKRSKLLSHLEKI--SQENGKV 359 Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 +IF T++ A L +L+ + G + Q ++ V+ +F+ G Sbjct 360 LIFVATKRVADDLTKFLR--------------MDGWPALAIHGDKQQAERDWVLAEFKSG 405 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFV-ATEGSR 488 +++AT VA GLD+ V+ Y N + GR RA + ++ T + Sbjct 406 RSPIMLATDVASRGLDVRDIGYVINYDFPNNCEDYIHRIGRTGRAGRKGTSYTYFTMDNS 465 Query 489 ELKRELINEALET 501 + REL+ E+ Sbjct 466 KAARELVQILRES 478 Score = 53.6 bits (127), Expect = 5e-06, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 48/130 (37%), Gaps = 13/130 (10%) Query 14 ALEGKNIIIWLPTGAGKTRAAAYV-------AKRHLETVDGAKVVVLVNRVHLVTQ-HGE 65 AL G++++ TG+GKT + + A+ L DG V++L L Q E Sbjct 144 ALSGRDLVAIAETGSGKT-ISFCLPAMVHINAQPLLAPGDGPIVLILAPTRELAVQIQTE 202 Query 66 EFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF 125 + R T + G L R ++ + T L L E L Sbjct 203 ATKFGQSSRIRNTAIYGGAPKGPQIRDLQRGVEICVATPGRLIDML----ETGKTNLKRV 258 Query 126 SLIVVDECHH 135 + +V+DE Sbjct 259 TYLVMDEADR 268 >sp|P0CQ77|DBP2_CRYNB ATP-dependent RNA helicase DBP2-A OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=DBP2 PE=3 SV=1 Length=540 Score = 122 bits (307), Expect = 4e-28, Method: Composition-based stats. Identities = 62/373 (17%), Positives = 126/373 (34%), Gaps = 53/373 (14%) Query 162 QVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQY-NL 220 + +G TA P + A++ L A +T + C P + + QP + Sbjct 126 RRMGFTA-PSSIQCQAWPMALSG-RDLVAIAETGSGKTISFCLPAMVHINAQPLLAPGDG 183 Query 221 CHRRSQDPFGDLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEAAALAGLQEQR 278 P +L ++ + + + +G Q+ L + R Sbjct 184 PIVLILAPTRELAVQIQTEATKFGQSSRIRNTAIYGGAPKGPQIRDLQRGVEICVATPGR 243 Query 279 VY------ALHLRRYNDALLIHDTVRAVD---------ALAALQDFYHREHVTKTQILCA 323 + +L+R L++ + R +D ++ ++ + T Sbjct 244 LIDMLETGKTNLKR-VTYLVMDEADRMLDMGFEPQIRKIVSQIRPDRQTLLFSATW-PKE 301 Query 324 ERRLLALFDDR-------------KNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRG 370 +RL F + +A + K L L++ S + + Sbjct 302 VQRLAMDFLHDFIQVNIGSLDLTANHNVAQHVEVCTDFDKRSKLLSHLEKI--SQENGKV 359 Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 +IF T++ A L +L+ + G + Q ++ V+ +F+ G Sbjct 360 LIFVATKRVADDLTKFLR--------------MDGWPALAIHGDKQQAERDWVLAEFKSG 405 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFV-ATEGSR 488 +++AT VA GLD+ V+ Y N + GR RA + ++ T + Sbjct 406 RSPIMLATDVASRGLDVRDIGYVINYDFPNNCEDYIHRIGRTGRAGRKGTSYTYFTMDNS 465 Query 489 ELKRELINEALET 501 + REL+ E+ Sbjct 466 KAARELVQILRES 478 Score = 53.6 bits (127), Expect = 5e-06, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 48/130 (37%), Gaps = 13/130 (10%) Query 14 ALEGKNIIIWLPTGAGKTRAAAYV-------AKRHLETVDGAKVVVLVNRVHLVTQ-HGE 65 AL G++++ TG+GKT + + A+ L DG V++L L Q E Sbjct 144 ALSGRDLVAIAETGSGKT-ISFCLPAMVHINAQPLLAPGDGPIVLILAPTRELAVQIQTE 202 Query 66 EFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF 125 + R T + G L R ++ + T L L E L Sbjct 203 ATKFGQSSRIRNTAIYGGAPKGPQIRDLQRGVEICVATPGRLIDML----ETGKTNLKRV 258 Query 126 SLIVVDECHH 135 + +V+DE Sbjct 259 TYLVMDEADR 268 >sp|Q4IF76|DBP2_GIBZE ATP-dependent RNA helicase DBP2 OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=DBP2 PE=3 SV=2 Length=554 Score = 122 bits (307), Expect = 4e-28, Method: Composition-based stats. Identities = 55/340 (16%), Positives = 111/340 (33%), Gaps = 48/340 (14%) Query 193 DTWCIMSPQNCCPQLQEHSQQPCKQY-NLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSR 251 +T + C P + + QP + P +L ++ +++ + Sbjct 181 ETGSGKTLTYCLPSIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQEEMKKFGRSSRIRN 240 Query 252 K--FGTQMYEQQVVKLSEAAALAGLQEQRVY------ALHLRRYNDALLIHDTVRAVD-- 301 +G Q+ LS + R+ +LRR L++ + R +D Sbjct 241 TCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGKTNLRR-VTYLVLDEADRMLDMG 299 Query 302 -------ALAALQDFYHREHVTKTQILCAERRLLALFDDRKN------------ELAHLA 342 + ++ + T D + + Sbjct 300 FEPQIRKIIGQIRPDRQTLMWSATWPKEVRALASDFLQDFIQVNIGSMELAANHRITQIV 359 Query 343 THGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL 402 E K + + K + + + +IF T++ A + +L+Q Sbjct 360 EVVTEMEKRDRMIK-HMEKVMENKENKILIFVGTKRVADEITRFLRQD------------ 406 Query 403 LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE 462 G S Q ++ V+ +F+ G ++VAT VA G+D+ + V+ Y N Sbjct 407 --GWPALSIHGDKQQNERDWVLDQFKTGKSPIMVATDVASRGIDVRNITHVLNYDYPNNS 464 Query 463 ISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALE 500 + GR RA A + T +++ R+L+N E Sbjct 465 EDYIHRIGRTGRAGAMGTAITLFTTDNQKQARDLVNVLQE 504 Score = 51.3 bits (121), Expect = 2e-05, Method: Composition-based stats. Identities = 32/129 (25%), Positives = 51/129 (40%), Gaps = 11/129 (9%) Query 14 ALEGKNIIIWLPTGAGKTRAAAYVAKRH------LETVDGAKVVVLVNRVHLVTQHGEEF 67 AL G++++ TG+GKT + H L DG V+VL L Q EE Sbjct 170 ALSGRDVVGIAETGSGKTLTYCLPSIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQEEM 229 Query 68 RRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS 126 ++ R T + G + L+R ++ I T L L + + L + Sbjct 230 KKFGRSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGKTN----LRRVT 285 Query 127 LIVVDECHH 135 +V+DE Sbjct 286 YLVLDEADR 294 >sp|Q9NXZ2|DDX43_HUMAN Probable ATP-dependent RNA helicase DDX43 OS=Homo sapiens OX=9606 GN=DDX43 PE=1 SV=2 Length=648 Score = 123 bits (309), Expect = 4e-28, Method: Composition-based stats. Identities = 41/199 (21%), Positives = 79/199 (40%), Gaps = 24/199 (12%) Query 347 ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA 406 E K ++ LQ S S++ + I+F + A L L +L Sbjct 470 EEEKWSHMQTFLQ---SMSSTDKVIVFVSRKAVADHLSSDL--------------ILGNI 512 Query 407 GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV 466 S QRD+++ ++ F+ G + +L+AT +A GLD+ V + N V Sbjct 513 SVESLHGDREQRDREKALENFKTGKVRILIATDLASRGLDVHDVTHVYNFDFPRNIEEYV 572 Query 467 QARGR-ARADQSVYAFVA-TEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD 524 GR RA ++ + T + ELIN ++E+A ++ + + + Sbjct 573 HRIGRTGRAGRTGVSITTLTRNDWRVASELIN-----ILERANQSIPEELVSMAERFKAH 627 Query 525 LQQAALTKRAAQAAQRENQ 543 Q+ + ++ + R + Sbjct 628 QQKREMERKMERPQGRPKK 646 Score = 52.9 bits (125), Expect = 8e-06, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 41/126 (33%), Gaps = 11/126 (9%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK-------VVVLVNRVHLVTQHGEEF 67 L+G ++I TG GKT HL K ++VL L Q E Sbjct 277 LQGIDLIGVAQTGTGKTLCYLMPGFIHLVLQPSLKGQRNRPGMLVLTPTRELALQVEGEC 336 Query 68 RRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSL 127 + + G L + D++I T L + V L + Sbjct 337 CKYSYKGLRSVCVYGGGNRDEQIEELKKGVDIIIATPGRLND----LQMSNFVNLKNITY 392 Query 128 IVVDEC 133 +V+DE Sbjct 393 LVLDEA 398 >sp|P46942|DB10_NICSY ATP-dependent RNA helicase-like protein DB10 OS=Nicotiana sylvestris OX=4096 PE=2 SV=1 Length=607 Score = 123 bits (308), Expect = 4e-28, Method: Composition-based stats. Identities = 41/166 (25%), Positives = 68/166 (41%), Gaps = 21/166 (13%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K +E+IL+ S + IIF T++ L L + G + Sbjct 376 KQRRVEQILR---SKEPGSKIIIFCSTKKMCDQLSRNLTRN---------------FGAA 417 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + +Q ++ V+ +F+ G +LVAT VA GLDI VV+ Y T V Sbjct 418 AIHGDKSQGERDYVLSQFRAGRSPVLVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRI 477 Query 470 GR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKM 513 GR RA S A+ ++ + +L+ + LE + ++ M Sbjct 478 GRTGRAGASGLAYTFFSDQDSKHALDLV-KVLEGANQCVPTELRDM 522 Score = 67.5 bits (163), Expect = 2e-10, Method: Composition-based stats. Identities = 71/341 (21%), Positives = 107/341 (31%), Gaps = 27/341 (8%) Query 14 ALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK-------VVVLVNRVHLVTQ-HGE 65 AL+G++I+ TG+GKT Y+ + K ++VL L TQ E Sbjct 179 ALQGRDIVAIAKTGSGKTL--GYLMPAFIHLQQRRKNPQLGPTILVLSPTRELATQIQAE 236 Query 66 EFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF 125 + R + T L G L+R D+++ T L L E V L Sbjct 237 AVKFGKSSRISCTCLYGGAPKGPQLRELSRGVDIVVATPGRLNDIL----EMRRVSLGQV 292 Query 126 SLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS-PGTGGASKLDGAINH 184 S +V+DE I E+ +QR Q L TA+ P D +N Sbjct 293 SYLVLDEADRMLDMGFEPQIRKIVKEVPVQR-----QTLMYTATWPKGVRKIAADLLVNS 347 Query 185 VLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHL 244 V N+D Q E KQ + G + Sbjct 348 VQVNIGNVDELV---ANKSITQHIEVVLPMEKQRRVEQILRSKEPGSKIIIFCSTKKMCD 404 Query 245 EMP-ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV--- 300 ++ L+R FG + L+ + R L L +R V Sbjct 405 QLSRNLTRNFGAAAIHGDKSQGERDYVLSQFRAGRSPVLVATDVAARGLDIKDIRVVINY 464 Query 301 DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHL 341 D ++D+ HR T D K+ L + Sbjct 465 DFPTGIEDYVHRIGRTGRAGASGLAYTFFSDQDSKHALDLV 505 >sp|A6SCT6|DBP3_BOTFB ATP-dependent RNA helicase dbp3 OS=Botryotinia fuckeliana (strain B05.10) OX=332648 GN=dbp3 PE=3 SV=2 Length=603 Score = 123 bits (308), Expect = 4e-28, Method: Composition-based stats. Identities = 40/194 (21%), Positives = 75/194 (39%), Gaps = 23/194 (12%) Query 350 KLEMLEKILQRQFSSS-NSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN 408 K L ++L++ S S R ++F ++ A + +++Q+ G Sbjct 421 KEYRLMQLLKQYQSGSQKDDRILVFCLYKKEATRVESFIRQK--------------GFRV 466 Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 + ++Q + ++ F+ G +LVAT VA GLDIP +V+ V Sbjct 467 AGIHGDLSQEQRTRSLEAFKSGNTPVLVATDVAARGLDIPAVKLVINCTFPLTVEDYVHR 526 Query 469 RGR-ARADQSVYAF-VATEGSRELKRELI------NEALETLMEQAVAAVQKMDQAEYQA 520 GR RA + A + TE + LI N+ + + + V+K Y A Sbjct 527 IGRTGRAGKDGLAITLFTEHDKAQSGALINVLKAANQPVPDELLKFGTTVKKKAHDAYGA 586 Query 521 KIRDLQQAALTKRA 534 +++ + Sbjct 587 FFKNVDTTKKATKI 600 Score = 49.0 bits (115), Expect = 1e-04, Method: Composition-based stats. Identities = 24/127 (19%), Positives = 49/127 (39%), Gaps = 10/127 (8%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKV------VVLVNRVHLVTQHGEEFR 68 L G+++I TG+GKT A A R++ ++ ++ VV+ L Q E+ Sbjct 221 LAGRDVIGVAETGSGKTMAFAVPCVRYMSSLPKNQINKGPRAVVVSPTRELAMQSYEQIV 280 Query 69 RMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLI 128 ++ P+ + D+++ T L + + +L+ + Sbjct 281 KLAKASGLECVCVYGGVPKDEQIRALKTADIVVATPGRLNDLIN----QGCADLSKARYV 336 Query 129 VVDECHH 135 V+DE Sbjct 337 VLDEADR 343 >sp|A2QFL3|DBP3_ASPNC ATP-dependent RNA helicase dbp3 OS=Aspergillus niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) OX=425011 GN=dbp3 PE=3 SV=1 Length=495 Score = 122 bits (305), Expect = 4e-28, Method: Composition-based stats. Identities = 70/350 (20%), Positives = 125/350 (36%), Gaps = 58/350 (17%) Query 227 DPFGDLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEAAALAGLQEQRVYALHL 284 P +L ++ DQI E+ ++ FG E+Q L + AA+ R+ L Sbjct 158 SPTRELAMQIHDQISKFAELVDIKVACIFGGVKKEEQREAL-KTAAIVVATPGRLKDLQN 216 Query 285 RRYND-----ALLIHDTVRAVDALAA--LQDFYHREHVTKTQI-------LCAERRLLAL 330 D L++ + R +D ++D V+K Q R L A Sbjct 217 DGSVDLGKVKYLVLDEADRMLDKGFEQDIKDIIRPMPVSKRQTVMFTATWPPVVRDLAAT 276 Query 331 F----------------DDRKNELAHLATHGPENPKLEMLEKILQRQ-FSSSNSPRGIIF 373 F + + + K + L ++L + S+S + ++F Sbjct 277 FMTSPVTVTIGGEPSADPRANTRIKQVVEVVKPHEKEQRLVQLLNKYQKGPSSSDKILVF 336 Query 374 TRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN 433 ++ A + L + G + + Q+++ + ++ F+ G Sbjct 337 CLYKKEAVRVERLLWNK--------------GFKVAGIHGDLGQQERFKSLESFKKGVST 382 Query 434 LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELK 491 +LVAT VA GLDIP +V+ V GR RA +A + TE + Sbjct 383 VLVATDVAARGLDIPSVKLVINVTFPLTVEDYVHRIGRTGRAGAEGHAITLFTEVDKAQS 442 Query 492 RELIN-------EALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRA 534 LIN + E L++ A V+K Y A +D+ + + Sbjct 443 GALINVLKAANQDVPEDLLKFG-ATVKKKQHDAYGAFYKDVDTNKTSTKI 491 Score = 45.2 bits (105), Expect = 0.002, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 46/128 (36%), Gaps = 12/128 (9%) Query 15 LEGKNIIIWLPTGAGKTR-AAAYVAKRHLETVDGAK-----VVVLVNRVHLVTQHGEEFR 68 G+++I TG+GKT K ++ K V++ L Q ++ Sbjct 113 FSGRDVIGIAETGSGKTLGFGLPCLKNLQDSAKKGKPYKPTAVMISPTRELAMQIHDQIS 172 Query 69 RMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSL 127 + + V + G + L + +++ T L+ + + V+L Sbjct 173 KFAELVDIKVACIFGGVKKEEQREAL-KTAAIVVATPGRLKD----LQNDGSVDLGKVKY 227 Query 128 IVVDECHH 135 +V+DE Sbjct 228 LVLDEADR 235 >sp|Q6BQ61|RRP3_DEBHA ATP-dependent rRNA helicase RRP3 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=RRP3 PE=3 SV=2 Length=477 Score = 121 bits (304), Expect = 5e-28, Method: Composition-based stats. Identities = 66/357 (18%), Positives = 118/357 (33%), Gaps = 60/357 (17%) Query 228 PFGDLLKKLMDQIHDHLEMPELSRKF---GTQMYEQQVVKLSEAAALAGLQEQRVYALHL 284 P +L ++ + D L R G Q L + R+ HL Sbjct 141 PTRELAYQI-KETFDALGSSMGLRSVCIVGGMDMMDQARDLMRKPHILVATPGRI-MDHL 198 Query 285 RRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFD----DRKNELAH 340 L + +D L D + K + +R LF ++ +L Sbjct 199 EHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKIIPTQRTTYLFSATMTNKIAKLQR 258 Query 341 LATHGPENP-----------------------KLEMLEKILQRQFSSSNSPRGIIFTRTR 377 + H P K L +L S IIFTRT Sbjct 259 ASLHNPVRVAVSNKYQTADNLVQSMMLVSDGYKNTYLIHLLNEFLGKS----IIIFTRTC 314 Query 378 QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA 437 + L ++G +TQ + + KF+ G N+L+A Sbjct 315 AHSQRTALL--------------ARILGFSAVPLHGQLTQAQRLGSLNKFKAGKANILIA 360 Query 438 TSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELI 495 T VA GLDIP ++V+ Y + T+ + + GR ARA +S + + T+ E + Sbjct 361 TDVAARGLDIPSVDIVINYDIPTDSKAYIHRVGRTARAGKSGKSISLITQYDLE-----M 415 Query 496 NEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHV 552 +E+++ + + +A + +A A ++ ++ P ++ Sbjct 416 YLRIESVLGKKLPKDPSPSKAVLDTLHVHVDRA---SAEAIRQTKDFHEKRNPKKNR 469 Score = 56.0 bits (133), Expect = 7e-07, Method: Composition-based stats. Identities = 39/133 (29%), Positives = 54/133 (41%), Gaps = 9/133 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q E I ALEGK+II TG+GKT A A + + E +VL L Q E Sbjct 92 QSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQALWEAQAAYYGLVLAPTRELAYQIKE 151 Query 66 EFRRMLD--GRWTVTTLSG-DMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 F + G +V + G DM +A L R +L+ T + L + L Sbjct 152 TFDALGSSMGLRSVCIVGGMDMMDQAR--DLMRKPHILVATPGRIMDHLEHTKG---FSL 206 Query 123 TVFSLIVVDECHH 135 +V+DE Sbjct 207 KNLKYLVMDEADR 219 >sp|P44701|SRMB_HAEIN ATP-dependent RNA helicase SrmB OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=srmB PE=3 SV=1 Length=439 Score = 121 bits (302), Expect = 5e-28, Method: Composition-based stats. Identities = 43/159 (27%), Positives = 67/159 (42%), Gaps = 15/159 (9%) Query 352 EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ 411 E K+L R + RGI+F R R+ A L L+++ IR+ L G Sbjct 233 EHKIKLLARFIETEEVTRGIVFIRRREDARELSETLRKR------GIRSAYLEG------ 280 Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 M Q + I K + G + +LVAT VA G+DI + V+ + L + + + GR Sbjct 281 --EMAQTQRNNAIDKLKSGIVTVLVATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGR 338 Query 472 -ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAA 509 ARA + A E I E +++ + A Sbjct 339 TARAGKKGTAVSFVEAHDYKLLGKIKRYTEEILKARILA 377 Score = 66.7 bits (161), Expect = 2e-10, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 54/137 (39%), Gaps = 14/137 (10%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK-----VVVLVNRVHLVT 61 Q E I A+E +++ PTG GKT A A +HL K ++VL L Sbjct 31 QMEAIPAAMEESDVLGSAPTGTGKTAAFLLPALQHLLDYPRRKPGPPRILVLTPTRELAM 90 Query 62 Q---HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEE 118 Q EE + + T++G + + DL++ T L + +EE Sbjct 91 QVAEQAEELAQFT--HLNIATITGGVAYQNHGDVFNTNQDLVVATPGRLLQYI----KEE 144 Query 119 HVELTVFSLIVVDECHH 135 + + +++ DE Sbjct 145 NFDCRSVEMLIFDEADR 161 >sp|Q8Y7M8|DBPA_LISMO ATP-dependent RNA helicase DbpA OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) OX=169963 GN=dbpA PE=2 SV=1 Length=470 Score = 121 bits (303), Expect = 6e-28, Method: Composition-based stats. Identities = 58/327 (18%), Positives = 117/327 (36%), Gaps = 30/327 (9%) Query 264 KLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCA 323 +L + L +V L L ++ L + + D L+ L + T + Sbjct 127 RLLDHIEKGSLNVDKVAHLVLDEVDEMLSMGFIDQVEDILSRLPKQRQNLFFSAT-MPEE 185 Query 324 ERRLLALFDDR--KNELAHLATHGPENPKLEM--LEKILQRQFSSSNSPRGIIFTRTRQS 379 + L+ + D E+A T+ + +++ EK L+ + N IIF T+ Sbjct 186 MQDLIKRYQDNPMVIEMASEKTNPIFHVEMQTDNKEKTLKDVLITENPDSAIIFCNTKNQ 245 Query 380 AHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATS 439 L L S + Q D+ + F+ G L+AT Sbjct 246 VDELTDLLD-----------------VKASKIHGGLRQEDRFRAMDDFKSGKSRFLIATD 288 Query 440 VAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRE-LKRELINE 497 VA G+D+ + ++V+ Y L + + V GR RA +S A + + L R++ Sbjct 289 VAGRGIDVDNVSLVINYDLPIEKENYVHRIGRTGRAGKSGKAISFVKTNENPLLRDIEEM 348 Query 498 ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRE------NQRQQFPVEH 551 T+ ++ V ++ E + + ++ + K + + N ++ + Sbjct 349 LDVTIEKKRKPTVIEVKVNEDAFRKKQQKRPTIKKARGEKLNKNIMKLYFNGGKKKKIRA 408 Query 552 VQLLCINCMVAVGHGSDLRKVEGTHHV 578 V + + D+ + HV Sbjct 409 VDFVGTISKLEGITAEDIGIITIEDHV 435 Score = 56.3 bits (134), Expect = 6e-07, Method: Composition-based stats. Identities = 28/128 (22%), Positives = 53/128 (41%), Gaps = 6/128 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE 65 Q VI AL G++I+ TG+GKT A A +E + + +++V L Q Sbjct 26 QKAVIPVALTGEDIVAKSQTGSGKTAAFAIPIAEQVEWEENKPQALIIVPTRELAMQVKT 85 Query 66 EFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 E + R + G L++ + +++ T L + E+ + + Sbjct 86 ECTNIGRFKRVKAAAIYGQSPFAKQKLELSQKNHIVVGTPGRLLDHI----EKGSLNVDK 141 Query 125 FSLIVVDE 132 + +V+DE Sbjct 142 VAHLVLDE 149 >sp|Q9HGM5|DBP8_SCHPO ATP-dependent RNA helicase dbp8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=dbp8 PE=3 SV=1 Length=453 Score = 121 bits (302), Expect = 6e-28, Method: Composition-based stats. Identities = 67/402 (17%), Positives = 137/402 (34%), Gaps = 44/402 (11%) Query 149 YLELKLQRAQPLPQ-VLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQL 207 + +++ P + L +P A ++D + NL I+ + Q Sbjct 61 FALPIIEKWSKDPSGIFALILTPTRELAIQIDEQFAALGA-NLNLKHALIVGGMDMIRQS 119 Query 208 QEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSE 267 + S++P R + + + + + + + + + + L + Sbjct 120 IDLSKRPHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFAD---DLDD 176 Query 268 AAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRL 327 ++ E R L DA+ + L + + + Sbjct 177 CFSVLPASEDRQTLLFTATVTDAIRQLKYQPQKNNKPPLWLYEVETDNISVPSTLQQSYI 236 Query 328 LALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWL 387 R+ L HL T PEN K IIF ++A + L Sbjct 237 FVSSQVREAYLVHLLTI-PENAK-----------------KSAIIFVNRTRTAELIYSIL 278 Query 388 QQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDI 447 + +++R L + M QR++ + +F+ +LVAT VA GLDI Sbjct 279 R------LLELRVTEL--------HSEMVQRERINSLGRFRAEAAKILVATDVASRGLDI 324 Query 448 PHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQ 505 P +V+ + L + + GR ARA +S + + TE +L A+E + Sbjct 325 PSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESISIVTERDVDLV-----HAIEDRVGT 379 Query 506 AVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQF 547 ++ + + + + I+++ A + +R+Q Sbjct 380 KLSEYEHVSENKMLEYIKEVTDAKRQASLEMIDRGFGERRQK 421 Score = 64.0 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 33/138 (24%), Positives = 54/138 (39%), Gaps = 6/138 (4%) Query 2 ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLV 60 E Q VI LEG+N I TG+GKT A A + ++ + G ++L L Sbjct 29 EPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEKWSKDPSGIFALILTPTRELA 88 Query 61 TQ---HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE 117 Q L+ + + DM ++ L++ +++ T L + S EE Sbjct 89 IQIDEQFAALGANLNLKHALIVGGMDMIRQSI--DLSKRPHVVVATPGRLADLIRSNGEE 146 Query 118 EHVELTVFSLIVVDECHH 135 L +V+DE Sbjct 147 TIAGLRRIKFLVMDEADR 164 >sp|A7TS37|RRP3_VANPO ATP-dependent rRNA helicase RRP3 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 GN=RRP3 PE=3 SV=1 Length=506 Score = 121 bits (304), Expect = 6e-28, Method: Composition-based stats. Identities = 42/202 (21%), Positives = 79/202 (39%), Gaps = 20/202 (10%) Query 346 PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 P K L ++ + I+FTRT+ +A + L+ Sbjct 309 PGGLKNTYLIYLMNEFIGKT----IIVFTRTKANAERITTL--------------ANLLE 350 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465 ++ + Q + + F+ G ++LVAT VA GLDIP ++V+ Y + + S Sbjct 351 FSATALHGDLNQNQRTGSLDLFKAGRRSILVATDVAARGLDIPSVDIVINYDIPVDSKSY 410 Query 466 VQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIR 523 + GR ARA +S + + ++ EL + + + L ++ V + + K Sbjct 411 IHRVGRTARAGRSGKSISLVSQYDLELILRIEDVLGKKLPKENVNKDAILTLRDSVDKAN 470 Query 524 DLQQAALTKRAAQAAQRENQRQ 545 L +R + R R+ Sbjct 471 GEVVMELNRRNKEKIARGKGRR 492 Score = 57.9 bits (138), Expect = 2e-07, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 45/131 (34%), Gaps = 5/131 (4%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q I PAL+G +II TG+GKT A A + R +L L Q E Sbjct 113 QARSIPPALQGHDIIGLAQTGSGKTAAFAIPILNRLWHDQQPYYACILAPTRELAQQIKE 172 Query 66 EFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 F + + G M L R ++I T L L + L Sbjct 173 TFDSLGSLMGVRSACIVGGMNMMDQARDLMRKPHIIIATPGRLMDHLENTRG---FSLRK 229 Query 125 FSLIVVDECHH 135 +V+DE Sbjct 230 LKFLVMDEADR 240 >sp|Q4WH83|DBP3_ASPFU ATP-dependent RNA helicase dbp3 OS=Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293) OX=330879 GN=dbp3 PE=3 SV=1 Length=503 Score = 121 bits (304), Expect = 6e-28, Method: Composition-based stats. Identities = 39/194 (20%), Positives = 76/194 (39%), Gaps = 23/194 (12%) Query 350 KLEMLEKILQRQFSSSN-SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN 408 K L ++L R + + ++F ++ A + L+ + + + + G Sbjct 320 KEARLVQLLSRSQRGAAVGDKVLVFCLYKKEAVRVERLLRSK------NFKVAGIHG--- 370 Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 + Q ++ + ++ F+ G+ +LVAT VA GLDIP +V+ V Sbjct 371 -----DLNQHERFKSLEAFKTGSATVLVATDVAARGLDIPSVKLVINVTFPLTVEDYVHR 425 Query 469 RGR-ARADQSVYAF-VATEGSRELKRELIN------EALETLMEQAVAAVQKMDQAEYQA 520 GR RA +A + TE + LIN + + + + V+K Y A Sbjct 426 IGRTGRAGADGHAITLFTEADKAQSGALINVLRAAKQDVPDALLKFGTTVKKKQHGAYGA 485 Query 521 KIRDLQQAALTKRA 534 +D+ + + Sbjct 486 FFKDVDTSKSATKI 499 Score = 48.3 bits (113), Expect = 2e-04, Method: Composition-based stats. Identities = 24/128 (19%), Positives = 51/128 (40%), Gaps = 15/128 (12%) Query 17 GKNIIIWLPTGAGKTRAAAYV--AKRHLETVDGAK------VVVLVNRVHLVTQHGEEFR 68 G+++I TG+GKT A + K+ L++ + V++ L Q ++ Sbjct 122 GRDVIGIAETGSGKTL-AFGLPCIKKILDSGKVKRKHARPAAVIISPTRELAMQIYDQLS 180 Query 69 RMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSL 127 + VT + G + L + +++ T L+ +++ V+L Sbjct 181 KFGASVDIRVTCIYGGVKKDEQREAL-KTAAIVVATPGRLKD----LKDDGSVDLGKVKY 235 Query 128 IVVDECHH 135 +V+DE Sbjct 236 LVLDEADR 243 >sp|Q10202|DBP3_SCHPO ATP-dependent RNA helicase dbp3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=dbp3 PE=3 SV=1 Length=578 Score = 121 bits (304), Expect = 9e-28, Method: Composition-based stats. Identities = 36/159 (23%), Positives = 60/159 (38%), Gaps = 18/159 (11%) Query 349 PKLEMLEKILQRQFSSS-NSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG 407 K ML+ +L++ SS + +IF ++ A + L ++ Sbjct 398 SKERMLDNLLRKHLSSGGKDDKILIFVLYKKEAARVEGTLARK---------------YN 442 Query 408 NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 M+Q + + + F+ G +LVAT VA GLDIP +V+ V Sbjct 443 VVGIHGDMSQGARLQALNDFKSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYVH 502 Query 468 ARGR-ARADQSVYAF-VATEGSRELKRELINEALETLME 504 GR RA+ A T + EL+N + + Sbjct 503 RIGRTGRANTKGTAITFFTPQDKSHAGELVNVLRQAKQD 541 Score = 53.6 bits (127), Expect = 4e-06, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 46/125 (37%), Gaps = 8/125 (6%) Query 15 LEGKNIIIWLPTGAGKTRA----AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRM 70 L G++++ TG+GKT A A + +V+V+ L Q E + Sbjct 200 LAGRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSPTRELAIQTYENLNSL 259 Query 71 LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV 130 + G + P++ A+ ++I T L + ++ + +V+ Sbjct 260 IQGTNLKAVVVYGGAPKSEQARAAKNASVIIGTPGRLLDLIND----GSIDCSQVGYLVL 315 Query 131 DECHH 135 DE Sbjct 316 DEADR 320 >sp|P0CQ98|PRP5_CRYNJ Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=PRP5 PE=3 SV=1 Length=1072 Score = 123 bits (308), Expect = 1e-27, Method: Composition-based stats. Identities = 45/208 (22%), Positives = 75/208 (36%), Gaps = 18/208 (9%) Query 313 EHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQR---QFSSSNSPR 369 E + + ++ + E+ + K L +IL + + R Sbjct 599 ESLARRILVKPLEITVGGRSVVAPEIDQRVEVRDGDTKFTRLLEILGEMGEEHKDEDDFR 658 Query 370 GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD 429 +IF ++SA L L Q+ G +S Q D+ E I+ F++ Sbjct 659 TLIFVDRQESADDLFRELLQR--------------GYVCASLHGGKEQVDRDEAIKNFKN 704 Query 430 GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSR 488 G + ++VATSVA GLD+ +V+ Y + V GR RA + Sbjct 705 GDVPIIVATSVAARGLDVKELKLVINYDAPNHMEDYVHRAGRTGRAGNKGTCITFITPEQ 764 Query 489 ELKRELINEALETLMEQAVAAVQKMDQA 516 E I ALE ++KM + Sbjct 765 ERFSVDIVRALEASKAFIPDDLKKMSDS 792 Score = 57.1 bits (136), Expect = 5e-07, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 55/138 (40%), Gaps = 12/138 (9%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYV-AKRHLET------VDGAKVVVLVNRVHL 59 Q + I + G+++I TG+GKT A + RH+ +G VV+ L Sbjct 430 QAQAIPAIMSGRDVIGIAKTGSGKT-VAFLLPMLRHVRDQRPVSGSEGPIAVVMSPTREL 488 Query 60 VTQHGEEFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALT-SPEEE 117 +Q +E + L + G + + +++ICT + LT + Sbjct 489 ASQIYKECQPFLKVLNIRASCCVGGSSISEDIAAMKKGAEVVICTPGRMIDLLTANNGRV 548 Query 118 EHVELTVFSLIVVDECHH 135 +V T + IV+DE Sbjct 549 TNVRRTTY--IVMDEADR 564 >sp|P0CQ99|PRP5_CRYNB Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=PRP5 PE=3 SV=1 Length=1072 Score = 123 bits (308), Expect = 1e-27, Method: Composition-based stats. Identities = 45/208 (22%), Positives = 75/208 (36%), Gaps = 18/208 (9%) Query 313 EHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQR---QFSSSNSPR 369 E + + ++ + E+ + K L +IL + + R Sbjct 599 ESLARRILVKPLEITVGGRSVVAPEIDQRVEVRDGDTKFTRLLEILGEMGEEHKDEDDFR 658 Query 370 GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD 429 +IF ++SA L L Q+ G +S Q D+ E I+ F++ Sbjct 659 TLIFVDRQESADDLFRELLQR--------------GYVCASLHGGKEQVDRDEAIKNFKN 704 Query 430 GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSR 488 G + ++VATSVA GLD+ +V+ Y + V GR RA + Sbjct 705 GDVPIIVATSVAARGLDVKELKLVINYDAPNHMEDYVHRAGRTGRAGNKGTCITFITPEQ 764 Query 489 ELKRELINEALETLMEQAVAAVQKMDQA 516 E I ALE ++KM + Sbjct 765 ERFSVDIVRALEASKAFIPDDLKKMSDS 792 Score = 57.1 bits (136), Expect = 5e-07, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 55/138 (40%), Gaps = 12/138 (9%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYV-AKRHLET------VDGAKVVVLVNRVHL 59 Q + I + G+++I TG+GKT A + RH+ +G VV+ L Sbjct 430 QAQAIPAIMSGRDVIGIAKTGSGKT-VAFLLPMLRHVRDQRPVSGSEGPIAVVMSPTREL 488 Query 60 VTQHGEEFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALT-SPEEE 117 +Q +E + L + G + + +++ICT + LT + Sbjct 489 ASQIYKECQPFLKVLNIRASCCVGGSSISEDIAAMKKGAEVVICTPGRMIDLLTANNGRV 548 Query 118 EHVELTVFSLIVVDECHH 135 +V T + IV+DE Sbjct 549 TNVRRTTY--IVMDEADR 564 >sp|A6ZSX1|RRP3_YEAS7 ATP-dependent rRNA helicase RRP3 OS=Saccharomyces cerevisiae (strain YJM789) OX=307796 GN=RRP3 PE=3 SV=1 Length=501 Score = 121 bits (302), Expect = 1e-27, Method: Composition-based stats. Identities = 47/202 (23%), Positives = 83/202 (41%), Gaps = 25/202 (12%) Query 346 PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 P K L +L + IIFTRT+ +A L ++ A L G Sbjct 304 PGGLKNTYLIYLLNEFIGKT----MIIFTRTKANAERLSGL------CNLLEFSATALHG 353 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465 + Q + + F+ G ++LVAT VA GLDIP ++VV Y + + S Sbjct 354 --------DLNQNQRMGALDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSY 405 Query 466 VQARGR-ARADQSVYAF-VATEGSREL---KRELINEAL--ETLMEQAVAAVQKMDQAEY 518 + GR ARA +S + + ++ EL E++ + L E++ + + ++ Sbjct 406 IHRVGRTARAGRSGKSISLVSQYDLELILRIEEVLGKKLPKESVDKNIILTLRDSVDKAN 465 Query 519 QAKIRDLQQAALTKRAAQAAQR 540 + ++ + K A +R Sbjct 466 GEVVMEMNRRNKEKIARGKGRR 487 Score = 59.8 bits (143), Expect = 5e-08, Method: Composition-based stats. Identities = 35/131 (27%), Positives = 49/131 (37%), Gaps = 5/131 (4%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q + I PALEG +II TG+GKT A A + R + +L L Q E Sbjct 108 QSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLWHDQEPYYACILAPTRELAQQIKE 167 Query 66 EFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 F + T + G M L R ++I T L L + + L Sbjct 168 TFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHIIIATPGRLMDHLENTKG---FSLRK 224 Query 125 FSLIVVDECHH 135 +V+DE Sbjct 225 LKFLVMDEADR 235 >sp|Q5N7W4|RH30_ORYSJ DEAD-box ATP-dependent RNA helicase 30 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0911100 PE=2 SV=2 Length=666 Score = 122 bits (305), Expect = 1e-27, Method: Composition-based stats. Identities = 37/170 (22%), Positives = 63/170 (37%), Gaps = 19/170 (11%) Query 333 DRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQG 392 + + + E+ K L K+L S R +IF +T++ + L+ Sbjct 465 KANHSIQQIIEVISEHEKYPRLSKLLSDLMDGS---RILIFFQTKKDCDKVTRQLR---- 517 Query 393 LQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNV 452 + G S Q ++ V+ +F+ G ++ AT VA GLD+ Sbjct 518 ----------MDGWPALSIHGDKAQAERDYVLAEFKSGKSPIMAATDVAARGLDVKDIKC 567 Query 453 VVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALE 500 V+ + T + GR RA S AF T + + R L+ E Sbjct 568 VINFDFPTTLEDYIHRIGRTGRAGASGTAFTFFTLSNAKFSRNLVKILRE 617 Score = 57.5 bits (137), Expect = 3e-07, Method: Composition-based stats. Identities = 34/129 (26%), Positives = 50/129 (39%), Gaps = 11/129 (9%) Query 14 ALEGKNIIIWLPTGAGKTRAAAYVAKRH------LETVDGAKVVVLVNRVHLVTQ-HGEE 66 AL+G+++I TG+GKT + H LE DG V++L L Q E Sbjct 285 ALKGRDMIGIAQTGSGKTLSYLLPGLVHVGAQPRLEQGDGPIVLILAPTRELAVQIQQES 344 Query 67 FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS 126 + R T + G L R +++I T L L E H L + Sbjct 345 GKFGSYSRTRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDML----EGGHTNLRRVT 400 Query 127 LIVVDECHH 135 +V+DE Sbjct 401 YLVLDEADR 409 >sp|A6SFV4|DBP8_BOTFB ATP-dependent RNA helicase dbp8 OS=Botryotinia fuckeliana (strain B05.10) OX=332648 GN=dbp8 PE=3 SV=1 Length=545 Score = 121 bits (302), Expect = 2e-27, Method: Composition-based stats. Identities = 63/397 (16%), Positives = 121/397 (30%), Gaps = 45/397 (11%) Query 163 VLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYN--- 219 + L +P A ++ + +L I + PQ +Q+P Sbjct 185 IFALVLTPTRELALQIYEQFKAISS-PQSLKAVLITGGSDMRPQATALAQRPHIVIATPG 243 Query 220 LCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRV 279 + D + L L+ E R + + + E ++ +R Sbjct 244 RLADHIRTSGEDTIGALRRVRMVVLD--EADRLLASGSVGSMLPDVEECLSILPPPAKRQ 301 Query 280 YALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELA 339 L + L F I + L Sbjct 302 TLLFTATVTPE--VRALKDMPRTPGKLPVFVCEVDTQALAIPPS--------------LN 345 Query 340 HLATHGPENPKLEMLEKILQRQFSSSNSPRGI-IFTRTRQSAHSLLLWLQQQQGLQTVDI 398 + P + L L + N P+ I IF +A L L+ Sbjct 346 QMHLQVPVTHREHYLHMFL---LTEKNLPKSIVIFCNRTATADYLTHLLR---------- 392 Query 399 RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL 458 L+ ++ + + QR + + + +F+ +LVAT VA GLDIP +V+ Y + Sbjct 393 ----LLDHRVTALHSKLPQRQRIDNLGRFRASAARILVATDVAARGLDIPEVGLVINYDI 448 Query 459 LTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEA---LETLMEQAVAAVQKM 513 + + GR ARA + A + +L + + N +E E V ++ Sbjct 449 PRDPDDYIHRVGRTARAGRKGEAVSFVGQRDVQLIQAIENRVGRQMEAWAEDGVNLETRV 508 Query 514 DQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVE 550 + + ++A L + + +R + Sbjct 509 IRESLKLVGEKKREAMLEIEEGREVGGKRKRGMKKLS 545 Score = 62.1 bits (149), Expect = 1e-08, Method: Composition-based stats. Identities = 47/253 (19%), Positives = 85/253 (34%), Gaps = 23/253 (9%) Query 15 LEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDG 73 L+G++ I TG+GKT A A + ++ E G +VL L Q E+F+ + Sbjct 151 LKGRDCIGGSRTGSGKTVAFAVPILQKWAEDPFGIFALVLTPTRELALQIYEQFKAISSP 210 Query 74 RW-TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDE 132 + ++G R LA+ ++I T L + + E+ L ++V+DE Sbjct 211 QSLKAVLITGGSDMRPQATALAQRPHIVIATPGRLADHIRTSGEDTIGALRRVRMVVLDE 270 Query 133 CHHTHKDTVYNVIMSQYLELKLQRAQPLPQ-VLGLTA--------------SPGTGGASK 177 ++ E P + L TA +PG Sbjct 271 ADRLLASGSVGSMLPDVEECLSILPPPAKRQTLLFTATVTPEVRALKDMPRTPGKLPVFV 330 Query 178 LDGAINHVLQLCANLDTWCIMSPQNCCPQ-----LQEHSQQPCKQYNLCHRRSQDPFGDL 232 + + + +L+ + P L P C+R + + Sbjct 331 CEVDTQAL-AIPPSLNQMHLQVPVTHREHYLHMFLLTEKNLPKSIVIFCNRTATADYLTH 389 Query 233 LKKLMDQIHDHLE 245 L +L+D L Sbjct 390 LLRLLDHRVTALH 402 >sp|A7EYW0|DBP3_SCLS1 ATP-dependent RNA helicase dbp3 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 GN=dbp3 PE=3 SV=2 Length=596 Score = 121 bits (303), Expect = 2e-27, Method: Composition-based stats. Identities = 40/194 (21%), Positives = 75/194 (39%), Gaps = 23/194 (12%) Query 350 KLEMLEKILQRQFSSS-NSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN 408 K L ++L++ S S R ++F ++ A + +++Q+ G Sbjct 414 KEYRLMQLLKQYQSGSQKDDRILVFCLYKKEATRVEGFIRQK--------------GFRV 459 Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 + ++Q + ++ F+ G +LVAT VA GLDIP +V+ V Sbjct 460 AGIHGDLSQEQRTRSLEAFKSGNTPVLVATDVAARGLDIPAVKLVINCTFPLTVEDYVHR 519 Query 469 RGR-ARADQSVYAF-VATEGSRELKRELI------NEALETLMEQAVAAVQKMDQAEYQA 520 GR RA + A + TE + LI N+ + + + V+K Y A Sbjct 520 IGRTGRAGKDGLAITLFTEHDKAQSGALINVLKAANQPVPDELLKFGTTVKKKAHDAYGA 579 Query 521 KIRDLQQAALTKRA 534 +++ + Sbjct 580 FFKNVDTTKKATKI 593 Score = 47.9 bits (112), Expect = 3e-04, Method: Composition-based stats. Identities = 24/127 (19%), Positives = 48/127 (38%), Gaps = 10/127 (8%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA------KVVVLVNRVHLVTQHGEEFR 68 L G+++I TG+GKT A A R++ ++ + VV+ L Q E+ Sbjct 214 LAGRDVIGVAETGSGKTMAFAVPCVRYMSSLPKNQKNKGPRAVVVSPTRELAMQSYEQIV 273 Query 69 RMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLI 128 ++ P+ + D+++ T L + + +L+ + Sbjct 274 KLAKASGLECVCVYGGVPKDEQIRALKTADIVVATPGRLNDLIN----QGCADLSKARYV 329 Query 129 VVDECHH 135 V+DE Sbjct 330 VLDEADR 336 >sp|Q7A0D2|CSHA_STAAW DEAD-box ATP-dependent RNA helicase CshA OS=Staphylococcus aureus (strain MW2) OX=196620 GN=cshA PE=3 SV=1 Length=506 Score = 120 bits (300), Expect = 2e-27, Method: Composition-based stats. Identities = 56/319 (18%), Positives = 107/319 (34%), Gaps = 40/319 (13%) Query 248 ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYA----LHLRRYNDALLIHDTVRAVDAL 303 ++ FG E+Q+ L + + RV L+ LI D + + Sbjct 99 QVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNM 158 Query 304 AALQDFYH---------REHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEML 354 + D R+ + + + + L + ++ + +P++E Sbjct 159 GFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEF 218 Query 355 EKILQR---------QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 I++ I+F RT++ L L + G Sbjct 219 YTIVKELEKFDTFTNFLDVHQPELAIVFGRTKRRVDELTSALISK--------------G 264 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465 +TQ + EV++KF++ +N+LVAT VA GLDI + V + + + S Sbjct 265 YKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESY 324 Query 466 VQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD 524 GR RA + A I +A M +K QA+ D Sbjct 325 THRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDANGRKMSALRPPHRK---EVLQAREDD 381 Query 525 LQQAALTKRAAQAAQRENQ 543 +++ + ++ R + Sbjct 382 IKEKVENWMSKESESRLKR 400 Score = 53.6 bits (127), Expect = 5e-06, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 47/128 (37%), Gaps = 5/128 (4%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEE 66 Q + I AL+G +I+ TG GKT A + G + ++L L Q E+ Sbjct 29 QKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVVGKQGVQSLILAPTRELAMQVAEQ 88 Query 67 FRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF 125 R V T+ G M L + +++ T + L ++ Sbjct 89 LREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRT----LKTDGI 144 Query 126 SLIVVDEC 133 +++DE Sbjct 145 HTLILDEA 152 >sp|Q6G7M9|CSHA_STAAS DEAD-box ATP-dependent RNA helicase CshA OS=Staphylococcus aureus (strain MSSA476) OX=282459 GN=cshA PE=3 SV=1 Length=506 Score = 120 bits (300), Expect = 2e-27, Method: Composition-based stats. Identities = 56/319 (18%), Positives = 107/319 (34%), Gaps = 40/319 (13%) Query 248 ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYA----LHLRRYNDALLIHDTVRAVDAL 303 ++ FG E+Q+ L + + RV L+ LI D + + Sbjct 99 QVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNM 158 Query 304 AALQDFYH---------REHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEML 354 + D R+ + + + + L + ++ + +P++E Sbjct 159 GFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEF 218 Query 355 EKILQR---------QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 I++ I+F RT++ L L + G Sbjct 219 YTIVKELEKFDTFTNFLDVHQPELAIVFGRTKRRVDELTSALISK--------------G 264 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465 +TQ + EV++KF++ +N+LVAT VA GLDI + V + + + S Sbjct 265 YKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESY 324 Query 466 VQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD 524 GR RA + A I +A M +K QA+ D Sbjct 325 THRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDANGRKMSALRPPHRK---EVLQAREDD 381 Query 525 LQQAALTKRAAQAAQRENQ 543 +++ + ++ R + Sbjct 382 IKEKVENWMSKESESRLKR 400 Score = 53.6 bits (127), Expect = 5e-06, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 47/128 (37%), Gaps = 5/128 (4%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEE 66 Q + I AL+G +I+ TG GKT A + G + ++L L Q E+ Sbjct 29 QKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVVGKQGVQSLILAPTRELAMQVAEQ 88 Query 67 FRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF 125 R V T+ G M L + +++ T + L ++ Sbjct 89 LREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRT----LKTDGI 144 Query 126 SLIVVDEC 133 +++DE Sbjct 145 HTLILDEA 152 >sp|Q6GEZ3|CSHA_STAAR DEAD-box ATP-dependent RNA helicase CshA OS=Staphylococcus aureus (strain MRSA252) OX=282458 GN=cshA PE=3 SV=1 Length=506 Score = 120 bits (300), Expect = 2e-27, Method: Composition-based stats. Identities = 56/319 (18%), Positives = 107/319 (34%), Gaps = 40/319 (13%) Query 248 ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYA----LHLRRYNDALLIHDTVRAVDAL 303 ++ FG E+Q+ L + + RV L+ LI D + + Sbjct 99 QVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNM 158 Query 304 AALQDFYH---------REHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEML 354 + D R+ + + + + L + ++ + +P++E Sbjct 159 GFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEF 218 Query 355 EKILQR---------QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 I++ I+F RT++ L L + G Sbjct 219 YTIVKELEKFDTFTNFLDVHQPELAIVFGRTKRRVDELTSALISK--------------G 264 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465 +TQ + EV++KF++ +N+LVAT VA GLDI + V + + + S Sbjct 265 YKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESY 324 Query 466 VQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD 524 GR RA + A I +A M +K QA+ D Sbjct 325 THRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDANGRKMSALRPPHRK---EVLQAREDD 381 Query 525 LQQAALTKRAAQAAQRENQ 543 +++ + ++ R + Sbjct 382 IKEKVENWMSKESESRLKR 400 Score = 53.3 bits (126), Expect = 5e-06, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 47/128 (37%), Gaps = 5/128 (4%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEE 66 Q + I AL+G +I+ TG GKT A + G + ++L L Q E+ Sbjct 29 QKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVVGKQGVQSLILAPTRELAMQVAEQ 88 Query 67 FRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF 125 R V T+ G M L + +++ T + L ++ Sbjct 89 LREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRT----LKTDGI 144 Query 126 SLIVVDEC 133 +++DE Sbjct 145 HTLILDEA 152 >sp|Q7A4G0|CSHA_STAAN DEAD-box ATP-dependent RNA helicase CshA OS=Staphylococcus aureus (strain N315) OX=158879 GN=cshA PE=1 SV=1 Length=506 Score = 120 bits (300), Expect = 2e-27, Method: Composition-based stats. Identities = 56/319 (18%), Positives = 107/319 (34%), Gaps = 40/319 (13%) Query 248 ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYA----LHLRRYNDALLIHDTVRAVDAL 303 ++ FG E+Q+ L + + RV L+ LI D + + Sbjct 99 QVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNM 158 Query 304 AALQDFYH---------REHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEML 354 + D R+ + + + + L + ++ + +P++E Sbjct 159 GFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEF 218 Query 355 EKILQR---------QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 I++ I+F RT++ L L + G Sbjct 219 YTIVKELEKFDTFTNFLDVHQPELAIVFGRTKRRVDELTSALISK--------------G 264 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465 +TQ + EV++KF++ +N+LVAT VA GLDI + V + + + S Sbjct 265 YKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESY 324 Query 466 VQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD 524 GR RA + A I +A M +K QA+ D Sbjct 325 THRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDANGRKMSALRPPHRK---EVLQAREDD 381 Query 525 LQQAALTKRAAQAAQRENQ 543 +++ + ++ R + Sbjct 382 IKEKVENWMSKESESRLKR 400 Score = 53.6 bits (127), Expect = 5e-06, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 47/128 (37%), Gaps = 5/128 (4%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEE 66 Q + I AL+G +I+ TG GKT A + G + ++L L Q E+ Sbjct 29 QKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVVGKQGVQSLILAPTRELAMQVAEQ 88 Query 67 FRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF 125 R V T+ G M L + +++ T + L ++ Sbjct 89 LREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRT----LKTDGI 144 Query 126 SLIVVDEC 133 +++DE Sbjct 145 HTLILDEA 152 >sp|Q99SH6|CSHA_STAAM DEAD-box ATP-dependent RNA helicase CshA OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) OX=158878 GN=cshA PE=1 SV=1 Length=506 Score = 120 bits (300), Expect = 2e-27, Method: Composition-based stats. Identities = 56/319 (18%), Positives = 107/319 (34%), Gaps = 40/319 (13%) Query 248 ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYA----LHLRRYNDALLIHDTVRAVDAL 303 ++ FG E+Q+ L + + RV L+ LI D + + Sbjct 99 QVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNM 158 Query 304 AALQDFYH---------REHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEML 354 + D R+ + + + + L + ++ + +P++E Sbjct 159 GFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEF 218 Query 355 EKILQR---------QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 I++ I+F RT++ L L + G Sbjct 219 YTIVKELEKFDTFTNFLDVHQPELAIVFGRTKRRVDELTSALISK--------------G 264 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465 +TQ + EV++KF++ +N+LVAT VA GLDI + V + + + S Sbjct 265 YKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESY 324 Query 466 VQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD 524 GR RA + A I +A M +K QA+ D Sbjct 325 THRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDANGRKMSALRPPHRK---EVLQAREDD 381 Query 525 LQQAALTKRAAQAAQRENQ 543 +++ + ++ R + Sbjct 382 IKEKVENWMSKESESRLKR 400 Score = 53.6 bits (127), Expect = 5e-06, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 47/128 (37%), Gaps = 5/128 (4%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEE 66 Q + I AL+G +I+ TG GKT A + G + ++L L Q E+ Sbjct 29 QKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVVGKQGVQSLILAPTRELAMQVAEQ 88 Query 67 FRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF 125 R V T+ G M L + +++ T + L ++ Sbjct 89 LREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRT----LKTDGI 144 Query 126 SLIVVDEC 133 +++DE Sbjct 145 HTLILDEA 152 >sp|Q5HEB9|CSHA_STAAC DEAD-box ATP-dependent RNA helicase CshA OS=Staphylococcus aureus (strain COL) OX=93062 GN=cshA PE=3 SV=1 Length=506 Score = 120 bits (300), Expect = 2e-27, Method: Composition-based stats. Identities = 56/319 (18%), Positives = 107/319 (34%), Gaps = 40/319 (13%) Query 248 ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYA----LHLRRYNDALLIHDTVRAVDAL 303 ++ FG E+Q+ L + + RV L+ LI D + + Sbjct 99 QVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNM 158 Query 304 AALQDFYH---------REHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEML 354 + D R+ + + + + L + ++ + +P++E Sbjct 159 GFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEF 218 Query 355 EKILQR---------QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 I++ I+F RT++ L L + G Sbjct 219 YTIVKELEKFDTFTNFLDVHQPELAIVFGRTKRRVDELTSALISK--------------G 264 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465 +TQ + EV++KF++ +N+LVAT VA GLDI + V + + + S Sbjct 265 YKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESY 324 Query 466 VQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD 524 GR RA + A I +A M +K QA+ D Sbjct 325 THRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDANGRKMSALRPPHRK---EVLQAREDD 381 Query 525 LQQAALTKRAAQAAQRENQ 543 +++ + ++ R + Sbjct 382 IKEKVENWMSKESESRLKR 400 Score = 53.6 bits (127), Expect = 5e-06, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 47/128 (37%), Gaps = 5/128 (4%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEE 66 Q + I AL+G +I+ TG GKT A + G + ++L L Q E+ Sbjct 29 QKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVVGKQGVQSLILAPTRELAMQVAEQ 88 Query 67 FRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF 125 R V T+ G M L + +++ T + L ++ Sbjct 89 LREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRT----LKTDGI 144 Query 126 SLIVVDEC 133 +++DE Sbjct 145 HTLILDEA 152 >sp|Q2YUH3|CSHA_STAAB DEAD-box ATP-dependent RNA helicase CshA OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) OX=273036 GN=cshA PE=3 SV=1 Length=506 Score = 120 bits (300), Expect = 2e-27, Method: Composition-based stats. Identities = 56/319 (18%), Positives = 107/319 (34%), Gaps = 40/319 (13%) Query 248 ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYA----LHLRRYNDALLIHDTVRAVDAL 303 ++ FG E+Q+ L + + RV L+ LI D + + Sbjct 99 QVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNM 158 Query 304 AALQDFYH---------REHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEML 354 + D R+ + + + + L + ++ + +P++E Sbjct 159 GFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEF 218 Query 355 EKILQR---------QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 I++ I+F RT++ L L + G Sbjct 219 YTIVKELEKFDTFTNFLDVHQPELAIVFGRTKRRVDELTSALISK--------------G 264 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465 +TQ + EV++KF++ +N+LVAT VA GLDI + V + + + S Sbjct 265 YKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESY 324 Query 466 VQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD 524 GR RA + A I +A M +K QA+ D Sbjct 325 THRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDANGRKMSALRPPHRK---EVLQAREDD 381 Query 525 LQQAALTKRAAQAAQRENQ 543 +++ + ++ R + Sbjct 382 IKEKVENWMSKESESRLKR 400 Score = 56.7 bits (135), Expect = 4e-07, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 47/128 (37%), Gaps = 5/128 (4%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEE 66 Q + I AL+G +I+ TG GKT A + G + ++L L Q E+ Sbjct 29 QKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVVWKQGVQSLILAPTRELAMQVAEQ 88 Query 67 FRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF 125 R V T+ G M L + +++ T + L ++ Sbjct 89 LREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRT----LKTDGI 144 Query 126 SLIVVDEC 133 +++DE Sbjct 145 HTLILDEA 152 >sp|Q2FWH5|CSHA_STAA8 DEAD-box ATP-dependent RNA helicase CshA OS=Staphylococcus aureus (strain NCTC 8325 / PS 47) OX=93061 GN=cshA PE=1 SV=1 Length=506 Score = 120 bits (300), Expect = 2e-27, Method: Composition-based stats. Identities = 56/319 (18%), Positives = 107/319 (34%), Gaps = 40/319 (13%) Query 248 ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYA----LHLRRYNDALLIHDTVRAVDAL 303 ++ FG E+Q+ L + + RV L+ LI D + + Sbjct 99 QVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNM 158 Query 304 AALQDFYH---------REHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEML 354 + D R+ + + + + L + ++ + +P++E Sbjct 159 GFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEF 218 Query 355 EKILQR---------QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 I++ I+F RT++ L L + G Sbjct 219 YTIVKELEKFDTFTNFLDVHQPELAIVFGRTKRRVDELTSALISK--------------G 264 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465 +TQ + EV++KF++ +N+LVAT VA GLDI + V + + + S Sbjct 265 YKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESY 324 Query 466 VQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD 524 GR RA + A I +A M +K QA+ D Sbjct 325 THRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDANGRKMSALRPPHRK---EVLQAREDD 381 Query 525 LQQAALTKRAAQAAQRENQ 543 +++ + ++ R + Sbjct 382 IKEKVENWMSKESESRLKR 400 Score = 53.6 bits (127), Expect = 5e-06, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 47/128 (37%), Gaps = 5/128 (4%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEE 66 Q + I AL+G +I+ TG GKT A + G + ++L L Q E+ Sbjct 29 QKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVVGKQGVQSLILAPTRELAMQVAEQ 88 Query 67 FRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF 125 R V T+ G M L + +++ T + L ++ Sbjct 89 LREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRT----LKTDGI 144 Query 126 SLIVVDEC 133 +++DE Sbjct 145 HTLILDEA 152 >sp|Q2FF45|CSHA_STAA3 DEAD-box ATP-dependent RNA helicase CshA OS=Staphylococcus aureus (strain USA300) OX=367830 GN=cshA PE=3 SV=1 Length=506 Score = 120 bits (300), Expect = 2e-27, Method: Composition-based stats. Identities = 56/319 (18%), Positives = 107/319 (34%), Gaps = 40/319 (13%) Query 248 ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYA----LHLRRYNDALLIHDTVRAVDAL 303 ++ FG E+Q+ L + + RV L+ LI D + + Sbjct 99 QVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNM 158 Query 304 AALQDFYH---------REHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEML 354 + D R+ + + + + L + ++ + +P++E Sbjct 159 GFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEF 218 Query 355 EKILQR---------QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 I++ I+F RT++ L L + G Sbjct 219 YTIVKELEKFDTFTNFLDVHQPELAIVFGRTKRRVDELTSALISK--------------G 264 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465 +TQ + EV++KF++ +N+LVAT VA GLDI + V + + + S Sbjct 265 YKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESY 324 Query 466 VQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD 524 GR RA + A I +A M +K QA+ D Sbjct 325 THRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDANGRKMSALRPPHRK---EVLQAREDD 381 Query 525 LQQAALTKRAAQAAQRENQ 543 +++ + ++ R + Sbjct 382 IKEKVENWMSKESESRLKR 400 Score = 53.6 bits (127), Expect = 5e-06, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 47/128 (37%), Gaps = 5/128 (4%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEE 66 Q + I AL+G +I+ TG GKT A + G + ++L L Q E+ Sbjct 29 QKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVVGKQGVQSLILAPTRELAMQVAEQ 88 Query 67 FRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF 125 R V T+ G M L + +++ T + L ++ Sbjct 89 LREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRT----LKTDGI 144 Query 126 SLIVVDEC 133 +++DE Sbjct 145 HTLILDEA 152 >sp|P38712|RRP3_YEAST ATP-dependent rRNA helicase RRP3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RRP3 PE=1 SV=2 Length=501 Score = 120 bits (300), Expect = 2e-27, Method: Composition-based stats. Identities = 47/202 (23%), Positives = 83/202 (41%), Gaps = 25/202 (12%) Query 346 PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 P K L +L + IIFTRT+ +A L ++ A L G Sbjct 304 PGGLKNTYLIYLLNEFIGKT----MIIFTRTKANAERLSGL------CNLLEFSATALHG 353 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465 + Q + + F+ G ++LVAT VA GLDIP ++VV Y + + S Sbjct 354 --------DLNQNQRMGSLDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSY 405 Query 466 VQARGR-ARADQSVYAF-VATEGSREL---KRELINEAL--ETLMEQAVAAVQKMDQAEY 518 + GR ARA +S + + ++ EL E++ + L E++ + + ++ Sbjct 406 IHRVGRTARAGRSGKSISLVSQYDLELILRIEEVLGKKLPKESVDKNIILTLRDSVDKAN 465 Query 519 QAKIRDLQQAALTKRAAQAAQR 540 + ++ + K A +R Sbjct 466 GEVVMEMNRRNKEKIARGKGRR 487 Score = 59.8 bits (143), Expect = 5e-08, Method: Composition-based stats. Identities = 35/131 (27%), Positives = 49/131 (37%), Gaps = 5/131 (4%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q + I PALEG +II TG+GKT A A + R + +L L Q E Sbjct 108 QSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLWHDQEPYYACILAPTRELAQQIKE 167 Query 66 EFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 F + T + G M L R ++I T L L + + L Sbjct 168 TFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHIIIATPGRLMDHLENTKG---FSLRK 224 Query 125 FSLIVVDECHH 135 +V+DE Sbjct 225 LKFLVMDEADR 235 >sp|A1C5V3|DBP3_ASPCL ATP-dependent RNA helicase dbp3 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=dbp3 PE=3 SV=1 Length=503 Score = 120 bits (300), Expect = 2e-27, Method: Composition-based stats. Identities = 37/196 (19%), Positives = 72/196 (37%), Gaps = 23/196 (12%) Query 348 NPKLEMLEKILQRQFSSSNS-PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA 406 + K L ++L + + + ++F ++ A + L+ + + + + G Sbjct 318 HDKEYRLVQLLSENQRGAAALDKVLVFCLYKKEAMRVERLLRNK------NFKVAGIHG- 370 Query 407 GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV 466 + Q ++ + + F+ G +LVAT VA GLDIP +V+ V Sbjct 371 -------DLNQHERFKSLDAFKSGAATVLVATDVAARGLDIPSVKLVINVTFPLTVEDYV 423 Query 467 QARGR-ARADQSVYAF-VATEGSRELKRELIN------EALETLMEQAVAAVQKMDQAEY 518 GR RA A + TE + LIN + + + + V+K Y Sbjct 424 HRIGRTGRAGAEGRAITLFTETDKAQSGALINVLKAAKQEVPQELLKFGTTVKKKQHGAY 483 Query 519 QAKIRDLQQAALTKRA 534 A ++ + Sbjct 484 GAFFKEADSGKSATKI 499 Score = 46.7 bits (109), Expect = 5e-04, Method: Composition-based stats. Identities = 23/129 (18%), Positives = 48/129 (37%), Gaps = 17/129 (13%) Query 17 GKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKV---------VVLVNRVHLVTQHGEEF 67 G+++I TG+GKT A + + +D K+ V++ L Q ++ Sbjct 122 GRDVIGIAETGSGKTLAFGLPCLK--KILDSGKIKFKNARPAAVIISPTRELAMQIYDQI 179 Query 68 RRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS 126 + T + G + L + +++ T L+ + + V+L Sbjct 180 SKYAGSIGIKATCIFGGVKKDEQREAL-KSAAIVVATPGRLKD----LQNDGSVDLGKVK 234 Query 127 LIVVDECHH 135 +V+DE Sbjct 235 YLVLDEADR 243 >sp|P0CR00|RRP3_CRYNJ ATP-dependent rRNA helicase RRP3 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=RRP3 PE=3 SV=1 Length=484 Score = 119 bits (299), Expect = 2e-27, Method: Composition-based stats. Identities = 39/139 (28%), Positives = 65/139 (47%), Gaps = 16/139 (12%) Query 366 NSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQ 425 +S +IFTRT + L + L++ +G MTQ + + Sbjct 276 SSSSMMIFTRTVADSQRLSIILRR--------------LGFPAIPLHGQMTQSLRLASLN 321 Query 426 KFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VA 483 KF+ G ++LVAT VA GLDIP ++V+ Y + TN V GR ARA +S + + Sbjct 322 KFKSGGRSILVATDVASRGLDIPLVDLVINYDMPTNSKDYVHRVGRTARAGRSGKSITLV 381 Query 484 TEGSRELKRELINEALETL 502 T+ E+ + + + + + Sbjct 382 TQYDVEILQRIESHIGKKM 400 Score = 63.3 bits (152), Expect = 3e-09, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 52/131 (40%), Gaps = 5/131 (4%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAY-VAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q E I ALEGK+II TG+GKT A + + + E +VL L Q + Sbjct 65 QAEAIPHALEGKDIIGLAQTGSGKTAAFSLPILQTLWENPQPFFALVLAPTRELAYQISQ 124 Query 66 EFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 + + G L G M + L++ +++ T L L + + L Sbjct 125 QVTSLGSGIGVRTAVLVGGMDMMSQSIALSKRPHIIVATPGRLMDHLENTKG---FSLKS 181 Query 125 FSLIVVDECHH 135 +V+DE Sbjct 182 LKYLVMDEADR 192 >sp|P0CR01|RRP3_CRYNB ATP-dependent rRNA helicase RRP3 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=RRP3 PE=3 SV=1 Length=484 Score = 119 bits (299), Expect = 2e-27, Method: Composition-based stats. Identities = 39/139 (28%), Positives = 65/139 (47%), Gaps = 16/139 (12%) Query 366 NSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQ 425 +S +IFTRT + L + L++ +G MTQ + + Sbjct 276 SSSSMMIFTRTVADSQRLSIILRR--------------LGFPAIPLHGQMTQSLRLASLN 321 Query 426 KFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VA 483 KF+ G ++LVAT VA GLDIP ++V+ Y + TN V GR ARA +S + + Sbjct 322 KFKSGGRSILVATDVASRGLDIPLVDLVINYDMPTNSKDYVHRVGRTARAGRSGKSITLV 381 Query 484 TEGSRELKRELINEALETL 502 T+ E+ + + + + + Sbjct 382 TQYDVEILQRIESHIGKKM 400 Score = 63.3 bits (152), Expect = 3e-09, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 52/131 (40%), Gaps = 5/131 (4%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAY-VAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q E I ALEGK+II TG+GKT A + + + E +VL L Q + Sbjct 65 QAEAIPHALEGKDIIGLAQTGSGKTAAFSLPILQTLWENPQPFFALVLAPTRELAYQISQ 124 Query 66 EFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 + + G L G M + L++ +++ T L L + + L Sbjct 125 QVTSLGSGIGVRTAVLVGGMDMMSQSIALSKRPHIIVATPGRLMDHLENTKG---FSLKS 181 Query 125 FSLIVVDECHH 135 +V+DE Sbjct 182 LKYLVMDEADR 192 >sp|Q4I662|DBP8_GIBZE ATP-dependent RNA helicase DBP8 OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=DBP8 PE=3 SV=1 Length=547 Score = 120 bits (300), Expect = 3e-27, Method: Composition-based stats. Identities = 42/216 (19%), Positives = 80/216 (37%), Gaps = 22/216 (10%) Query 338 LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD 397 L + P K L L ++ I+F +A L L+ + Sbjct 344 LKQMYIKVPVTHKEHYLHTFLLT--EANVDKTVILFCNRTSTADYLHHLLRMLE------ 395 Query 398 IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG 457 +S + + QR + + + +F+ +LVAT VA GLDIP ++V+ Y Sbjct 396 --------HRVTSLHSKLPQRQRIDNLARFRASAARILVATDVAARGLDIPEVSLVINYD 447 Query 458 LLTNEISMVQARGR-ARADQSVYAF-VATEGSRELK---RELINEALETLMEQAVAAVQK 512 L + + GR ARA + A + EL + + +E E+ V + Sbjct 448 LPRDPDDYIHRVGRTARAGRKGEAVSFVGQRDVELALTIEKRVGRDMEAWEEEGVNLETR 507 Query 513 MDQAEYQAKIRDLQQAALT-KRAAQAAQRENQRQQF 547 + + + ++A L + + + + +Q Sbjct 508 VVRDALKLVSEKKREALLEVEEGREVGGKRKRTKQK 543 Score = 60.2 bits (144), Expect = 4e-08, Method: Composition-based stats. Identities = 28/123 (23%), Positives = 50/123 (41%), Gaps = 2/123 (2%) Query 15 LEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDG 73 L+G++ I TG+GKT A A + ++ E VVL L Q E+F+ + Sbjct 151 LKGRDCIGGSRTGSGKTMAFAVPILQKWSEDPTAIFAVVLTPTRELALQIFEQFKAISSP 210 Query 74 RW-TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDE 132 + ++G R + + ++I T L + + E+ L +V+DE Sbjct 211 QSLKAILVTGGSDMRTQAIEIGKRPHVIIATPGRLADHIRTSGEDTICGLRRVRYVVLDE 270 Query 133 CHH 135 Sbjct 271 ADR 273 >sp|Q0INC5|RH28_ORYSJ DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0481100 PE=2 SV=2 Length=802 Score = 121 bits (303), Expect = 3e-27, Method: Composition-based stats. Identities = 75/397 (19%), Positives = 142/397 (36%), Gaps = 46/397 (12%) Query 186 LQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLE 245 +C + T + P L+ +P K+ P +L ++ I + Sbjct 232 RDICGSAITGSGKTAAFSLPVLERLLFRP-KRVPAIRVLILTPTRELAAQVHSMIEKLAQ 290 Query 246 MPELS--RKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDAL 303 ++ G + Q V L + R+ HLR L + +D Sbjct 291 FTDIRCCLIVGGLSTKVQEVALRSMPDIVVATPGRIID-HLRNSLSVGLEDLAILILDEA 349 Query 304 AALQDFYHREHVTKTQILCAERRLLALFD----DRKNELAHLATHGPE----NPKLEM-- 353 L + + + +C RR LF + NEL L+ + P +P L+ Sbjct 350 DRLLELGFSAEIQELIRMCPRRRQTMLFSATMTEEINELVTLSLNKPVRLEADPSLKRPA 409 Query 354 -LEK---------------ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD 397 L + +L + + IIF+ T+ SAH L + Sbjct 410 TLTEEVVRIRRAREANQEAVLLALCLKTFKDKVIIFSGTKHSAHRLKIIFG--------- 460 Query 398 IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG 457 L G + ++TQ + E ++ F+ ++ L+AT VA G+DI V+ + Sbjct 461 -----LSGMKAAELHGNLTQAQRLEALELFKKQEVDFLIATDVAARGIDIVGVRTVINFS 515 Query 458 LLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQ 515 + + + GR ARA + YA T+ R L + + +A L + VA + Sbjct 516 CPRDARTYLHRVGRTARAGREGYAVTFVTDDDRSLLKAIAKKAGSQLKSRIVAEKPVAEC 575 Query 516 AEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHV 552 A+ ++ D + + + R+ + + E++ Sbjct 576 AKLIEELEDQISTIIQEEREERILRKAEMEATKAENM 612 Score = 52.9 bits (125), Expect = 8e-06, Method: Composition-based stats. Identities = 46/299 (15%), Positives = 98/299 (33%), Gaps = 27/299 (9%) Query 14 ALEGKNIIIWLPTGAGKTRAAAYVAKRHL----ETVDGAKVVVLVNRVHLVTQHGEEFRR 69 AL G++I TG+GKT A + L + V +V++L L Q + Sbjct 228 ALTGRDICGSAITGSGKTAAFSLPVLERLLFRPKRVPAIRVLILTPTRELAAQVHSMIEK 287 Query 70 MLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLI 128 + + G + + L D+++ T + L + V L +++ Sbjct 288 LAQFTDIRCCLIVGGLSTKVQEVALRSMPDIVVATPGRIIDHLRNSLS---VGLEDLAIL 344 Query 129 VVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQL 188 ++DE + I +R L +A+ + ++N ++L Sbjct 345 ILDEADRLLELGFSAEIQELIRMCPRRRQTML-----FSATMTEEINELVTLSLNKPVRL 399 Query 189 CANLDTWCIMSPQNCCPQLQ--EHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEM 246 A+ + +++ + Q LC + +D + Sbjct 400 EADPSLKRPATLTEEVVRIRRAREANQEAVLLALCLKTFKDK-----VIIFSGTKHSAHR 454 Query 247 PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHD-TVRAVDALA 304 ++ + L++A L L+ L ++ D L+ D R +D + Sbjct 455 LKIIFGLSGMKAAELHGNLTQAQRLEALE------LFKKQEVDFLIATDVAARGIDIVG 507 >sp|Q0U8V9|DBP8_PHANO ATP-dependent RNA helicase DBP8 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) OX=321614 GN=DBP8 PE=3 SV=1 Length=508 Score = 119 bits (299), Expect = 3e-27, Method: Composition-based stats. Identities = 61/389 (16%), Positives = 132/389 (34%), Gaps = 39/389 (10%) Query 149 YLELKLQRAQPLPQ-VLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQL 207 + LQ+ P + GL +P A ++ + + ++ + + Q Sbjct 131 FSVPILQKWAEDPSGIFGLIITPTRELAIQIYEQVKAISA-PQSMKPILVTGGSDQREQA 189 Query 208 QEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSE 267 + +P R ++ + + + + + + + Sbjct 190 IALASRPHVVIATPGRLAEHIKTSGEDTICGLRRVRFVVFDEADRLLAPGRGSMIPDIET 249 Query 268 AAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRL 327 ++ +EQR L +L +++ + E T+T A Sbjct 250 CLSVLPPKEQRQTLLFTATVTPEVL---ALKSQPRAPGRLPIFVCEVDTETLATPA---- 302 Query 328 LALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWL 387 L+ L P K L +L + + S IIF ++A L L Sbjct 303 ---------SLSQLYLQTPVTHKECYLHVLLLTPLNLTKS--VIIFCNRTKTATLLEYML 351 Query 388 QQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDI 447 + ++ ++ + + Q+D+ + +F+ +LVAT VA GLDI Sbjct 352 R--------------MLDHRVTALHSGLKQQDRISNLARFRAQAARILVATDVAARGLDI 397 Query 448 PHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQA 506 P +VV + + + + GR ARA + + G R+++ L A+E + Sbjct 398 PEVGLVVNFDVPRDPDDYIHRVGRTARAGRPGNSVTFI-GQRDVELVL---AIEERVGGK 453 Query 507 VAAVQKMDQAEYQAKIRDLQQAALTKRAA 535 ++ ++ + +RD + K+ Sbjct 454 MSEFEEEGVSVEGRVVRDALKIVTEKKRE 482 Score = 52.9 bits (125), Expect = 7e-06, Method: Composition-based stats. Identities = 47/251 (19%), Positives = 83/251 (33%), Gaps = 20/251 (8%) Query 15 LEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDG 73 L+G++ I TG GKT A + + ++ E G +++ L Q E+ + + Sbjct 112 LKGRDCIGGSRTGTGKTVAFSVPILQKWAEDPSGIFGLIITPTRELAIQIYEQVKAISAP 171 Query 74 RWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDE 132 + ++G R LA ++I T L + + E+ L +V DE Sbjct 172 QSMKPILVTGGSDQREQAIALASRPHVVIATPGRLAEHIKTSGEDTICGLRRVRFVVFDE 231 Query 133 CHHTHKDTVYNVIMS-----QYLELKLQRAQPL------PQVLGLTASPGTGGASKLDGA 181 ++I L K QR L P+VL L + P G + Sbjct 232 ADRLLAPGRGSMIPDIETCLSVLPPKEQRQTLLFTATVTPEVLALKSQPRAPGRLPIFVC 291 Query 182 INHVLQLC--ANLDTWCIMSPQNCCP-----QLQEHSQQPCKQYNLCHRRSQDPFGDLLK 234 L A+L + +P L C+R + + Sbjct 292 EVDTETLATPASLSQLYLQTPVTHKECYLHVLLLTPLNLTKSVIIFCNRTKTATLLEYML 351 Query 235 KLMDQIHDHLE 245 +++D L Sbjct 352 RMLDHRVTALH 362 >sp|Q9CWX9|DDX47_MOUSE Probable ATP-dependent RNA helicase DDX47 OS=Mus musculus OX=10090 GN=Ddx47 PE=2 SV=2 Length=455 Score = 119 bits (297), Expect = 3e-27, Method: Composition-based stats. Identities = 51/275 (19%), Positives = 96/275 (35%), Gaps = 25/275 (9%) Query 275 QEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDR 334 + R+ + D +L L + + + + + + ++ Sbjct 175 EADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQT 234 Query 335 KNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQ 394 +L P K L IL +S +IF T + L L+ Sbjct 235 VEKLQQYYLFIPSKFKDTYLVYILNELAGNSF----MIFCSTCNNTQRTALLLRN----- 285 Query 395 TVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV 454 +G M+Q + + KF+ ++L+AT VA GLDIPH +VVV Sbjct 286 ---------LGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVV 336 Query 455 RYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQK 512 + + T+ + GR ARA +S A T+ EL + +E L+ + + Sbjct 337 NFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQR-----IEHLIGKKLPVFPT 391 Query 513 MDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQF 547 D+ R + + + + +R++ Sbjct 392 QDEEVMMLTERVNEAQRFARMELREHGEKKKRKRE 426 Score = 62.9 bits (151), Expect = 5e-09, Method: Composition-based stats. Identities = 67/435 (15%), Positives = 134/435 (31%), Gaps = 54/435 (12%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT-RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q E I AL+G++II TG+GKT A + LET +VL L Q E Sbjct 51 QIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISE 110 Query 66 EFRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 +F + + G + + LA+ ++I T L L + + L Sbjct 111 QFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKG---FNLRA 167 Query 125 FSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQ---VLGLTASPGTGGASKLDGA 181 +V+DE ++ + + + +P+ +A+ A Sbjct 168 LKYLVMDEADR--------ILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAA 219 Query 182 INHVLQLCANLDTWCIMSPQNCCPQLQE--HSQQPCKQYNLCHRRSQDPFGDLLKKLMDQ 239 + + ++ C +S + + + + P K + + + Sbjct 220 LKNPVK--------CAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCS 271 Query 240 IHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDA------LLI 293 ++ + L + ++S++ L L + + A + D + Sbjct 272 TCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPH 331 Query 294 HDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPE-NPKLE 352 D V D +D+ HR T + + + + E ++E Sbjct 332 VDVVVNFDIPTHSKDYIHRVGRTARAGRSGKA------------ITFVTQYDVELFQRIE 379 Query 353 MLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL--------LI 404 L F + + ++ T A ++ G + R I Sbjct 380 HLIGKKLPVFPTQDEE-VMMLTERVNEAQRFARMELREHGEKKKRKREDAGDDDDKEGAI 438 Query 405 GAGNSSQSTHMTQRD 419 G N M +R Sbjct 439 GVRNKVAGGKMKKRK 453 >sp|Q9SQV1|RH40_ARATH DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana OX=3702 GN=RH40 PE=2 SV=1 Length=1088 Score = 121 bits (304), Expect = 3e-27, Method: Composition-based stats. Identities = 46/170 (27%), Positives = 69/170 (41%), Gaps = 21/170 (12%) Query 346 PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 P+ K LE+IL+ Q + IIF T++ L + + Sbjct 662 PQMEKERRLEQILRSQ---ERGSKVIIFCSTKRLCDHLARSVGRH--------------- 703 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465 G TQ ++ V+ +F+ G +L+AT VA GLDI VV+ Y T Sbjct 704 FGAVVIHGDKTQGERDWVLNQFRSGKSCVLIATDVAARGLDIKDIRVVINYDFPTGVEDY 763 Query 466 VQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKM 513 V GR RA + AF TE + +LI + LE +Q V+ + Sbjct 764 VHRIGRTGRAGATGVAFTFFTEQDWKYAPDLI-KVLEGANQQVPPQVRDI 812 Score = 71.8 bits (174), Expect = 1e-11, Method: Composition-based stats. Identities = 68/315 (22%), Positives = 107/315 (34%), Gaps = 33/315 (10%) Query 14 ALEGKNIIIWLPTGAGKT---RAAAYVAKRHLETV--DGAKVVVLVNRVHLVTQ-HGEEF 67 AL+ ++I+ TG+GKT A++ RH +G V++L L TQ E Sbjct 469 ALQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSRNGPTVLILAPTRELATQIQDEAL 528 Query 68 RRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSL 127 R R + T L G L R D+++ T L L E + ++ SL Sbjct 529 RFGRSSRISCTCLYGGAPKGPQLKELERGADIVVATPGRLNDIL----EMKMIDFQQVSL 584 Query 128 IVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS-PGTGGASKLDGAINHVL 186 +V+DE I E+ +R Q L TA+ P D +N V Sbjct 585 LVLDEADRMLDMGFEPQIRKIVNEIPPRR-----QTLMYTATWPKEVRKIASDLLVNPVQ 639 Query 187 QLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEM 246 N+ ++ Q E Q K+ L G + + Sbjct 640 V---NIGRVDELAANKAITQYVEVVPQMEKERRLEQILRSQERGSKVIIFCSTKRLCDHL 696 Query 247 PE-LSRKFG--------TQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTV 297 + R FG TQ V+ + L V A L + ++I+ Sbjct 697 ARSVGRHFGAVVIHGDKTQGERDWVLNQFRSGKSCVLIATDVAARGLDIKDIRVVIN--- 753 Query 298 RAVDALAALQDFYHR 312 D ++D+ HR Sbjct 754 --YDFPTGVEDYVHR 766 >sp|A7E436|DBP8_SCLS1 ATP-dependent RNA helicase dbp8 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 GN=dbp8 PE=3 SV=1 Length=540 Score = 119 bits (299), Expect = 3e-27, Method: Composition-based stats. Identities = 68/395 (17%), Positives = 133/395 (34%), Gaps = 41/395 (10%) Query 163 VLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCH 222 + L +P A ++ + +L I + PQ +Q+P Sbjct 180 IFALVLTPTRELALQIYEQFKAISS-PQSLKAVLITGGSDMRPQATALAQRPHVVIATP- 237 Query 223 RRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYAL 282 G L + D + R ++ + S + L ++E Sbjct 238 -------GRLADHIRTSGEDTVCALRRVRMVVLDEADRLLASGSVGSMLPDVEE---CLS 287 Query 283 HLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLA 342 L ++ + T + AL+D + K + E AL + L + Sbjct 288 LLPPPSERQTLLFTATVTPEVRALKDM--PRTLGKPPVFVCEVDTQAL--AIPSSLNQMH 343 Query 343 THGPENPKLEMLEKILQRQFSSSNSPRGI-IFTRTRQSAHSLLLWLQQQQGLQTVDIRAQ 401 P + L L + N P+ I IF +A L L+ Sbjct 344 LQVPVTHREHYLHMFL---LTEKNLPKSIVIFCNRTATADYLTHLLR------------- 387 Query 402 LLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN 461 L+ ++ + + QR + + + +F+ +LVAT VA GLDIP +V+ Y + + Sbjct 388 -LLEHRVTALHSKLPQRQRIDNLGRFRASAARILVATDVAARGLDIPEVGLVINYDVPRD 446 Query 462 EISMVQARGR-ARADQSVYAFVATEGSRELK-----RELINEALETLMEQAVAAVQKMDQ 515 + GR ARA + A G R+++ + + +E E+ V ++ + Sbjct 447 PDDYIHRVGRTARAGRKGEAVTFV-GQRDVQLILAIEKRVGRQMEAWTEEGVNLETRVIR 505 Query 516 AEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVE 550 + ++A L + + +R + Sbjct 506 ESLKLVGEKKREAMLEIEEGREVGGKRKRGMKKLS 540 Score = 64.8 bits (156), Expect = 1e-09, Method: Composition-based stats. Identities = 44/252 (17%), Positives = 85/252 (34%), Gaps = 21/252 (8%) Query 15 LEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDG 73 L+G++ I TG+GKT A A + ++ E G +VL L Q E+F+ + Sbjct 146 LKGRDCIGGSRTGSGKTVAFAVPILQKWAEDPFGIFALVLTPTRELALQIYEQFKAISSP 205 Query 74 RW-TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDE 132 + ++G R LA+ ++I T L + + E+ L ++V+DE Sbjct 206 QSLKAVLITGGSDMRPQATALAQRPHVVIATPGRLADHIRTSGEDTVCALRRVRMVVLDE 265 Query 133 CHHTHKDTVYNVIMSQYLELKLQRAQPLPQ---VLGLTASPGTGGASKLDGAINH----- 184 ++ E P + + T +P + + Sbjct 266 ADRLLASGSVGSMLPDVEECLSLLPPPSERQTLLFTATVTPEVRALKDMPRTLGKPPVFV 325 Query 185 ------VLQLCANLDTWCIMSPQNCCPQ-----LQEHSQQPCKQYNLCHRRSQDPFGDLL 233 L + ++L+ + P L P C+R + + L Sbjct 326 CEVDTQALAIPSSLNQMHLQVPVTHREHYLHMFLLTEKNLPKSIVIFCNRTATADYLTHL 385 Query 234 KKLMDQIHDHLE 245 +L++ L Sbjct 386 LRLLEHRVTALH 397 >sp|A1DG51|DBP3_NEOFI ATP-dependent RNA helicase dbp3 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dbp3 PE=3 SV=1 Length=503 Score = 119 bits (298), Expect = 4e-27, Method: Composition-based stats. Identities = 40/194 (21%), Positives = 75/194 (39%), Gaps = 23/194 (12%) Query 350 KLEMLEKILQRQFSSSNS-PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN 408 K L ++L R + + ++F ++ A + L+ T + + + G Sbjct 320 KEARLVQLLNRSQRGAAVCDKVLVFCLYKKEAVRVERLLR------TKNFKVAGIHG--- 370 Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 + Q ++ + ++ F+ G +LVAT VA GLDIP +V+ V Sbjct 371 -----DLNQHERFKSLEAFKTGAATVLVATDVAARGLDIPSVKLVINVTFPLTVEDYVHR 425 Query 469 RGR-ARADQSVYAF-VATEGSRELKRELIN------EALETLMEQAVAAVQKMDQAEYQA 520 GR RA +A + TE + LIN + + + + V+K Y A Sbjct 426 IGRTGRAGADGHAITLFTETDKAQSGALINVLRAAKQDVPDALLKFGTTVKKKQHGAYGA 485 Query 521 KIRDLQQAALTKRA 534 +D+ + + Sbjct 486 FFKDVDTSKSATKI 499 Score = 47.1 bits (110), Expect = 5e-04, Method: Composition-based stats. Identities = 24/128 (19%), Positives = 50/128 (39%), Gaps = 15/128 (12%) Query 17 GKNIIIWLPTGAGKTRAAAYV--AKRHLETVDGAK------VVVLVNRVHLVTQHGEEFR 68 G+++I TG+GKT A + K+ L++ + V++ L Q ++ Sbjct 122 GRDVIGIAETGSGKTL-AFGLPCIKKILDSGKVKRKHARPAAVIISPTRELAMQIYDQLS 180 Query 69 RMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSL 127 + VT + G + L + +++ T L+ + + V+L Sbjct 181 KFGASVDIRVTCIYGGVKKDEQREAL-KTAAIVVATPGRLKD----LQNDGSVDLGKVKY 235 Query 128 IVVDECHH 135 +V+DE Sbjct 236 LVLDEADR 243 >sp|Q9H0S4|DDX47_HUMAN Probable ATP-dependent RNA helicase DDX47 OS=Homo sapiens OX=9606 GN=DDX47 PE=1 SV=1 Length=455 Score = 118 bits (296), Expect = 4e-27, Method: Composition-based stats. Identities = 61/387 (16%), Positives = 122/387 (32%), Gaps = 26/387 (7%) Query 163 VLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCH 222 ++GL + + +N +L+ L + + Q+ E + Sbjct 64 IIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQF-EALGSSIGVQ 122 Query 223 RRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYAL 282 D + + + + + + + L L + R+ + Sbjct 123 SAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNM 182 Query 283 HLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLA 342 D +L L + + + + + + ++ +L Sbjct 183 DFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYY 242 Query 343 THGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL 402 P K L IL +S +IF T + L L+ Sbjct 243 IFIPSKFKDTYLVYILNELAGNSF----MIFCSTCNNTQRTALLLRN------------- 285 Query 403 LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE 462 +G M+Q + + KF+ ++L+AT VA GLDIPH +VVV + + T+ Sbjct 286 -LGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHS 344 Query 463 ISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA 520 + GR ARA +S A T+ EL + +E L+ + + D Sbjct 345 KDYIHRVGRTARAGRSGKAITFVTQYDVELFQR-----IEHLIGKKLPGFPTQDDEVMML 399 Query 521 KIRDLQQAALTKRAAQAAQRENQRQQF 547 R + + + + +R + Sbjct 400 TERVAEAQRFARMELREHGEKKKRSRE 426 Score = 64.0 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 67/435 (15%), Positives = 134/435 (31%), Gaps = 54/435 (12%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT-RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q E I AL+G++II TG+GKT A + LET +VL L Q E Sbjct 51 QIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISE 110 Query 66 EFRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 +F + + G + + LA+ ++I T L L + + L Sbjct 111 QFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKG---FNLRA 167 Query 125 FSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQ---VLGLTASPGTGGASKLDGA 181 +V+DE ++ + + + +P+ +A+ A Sbjct 168 LKYLVMDEADR--------ILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAA 219 Query 182 INHVLQLCANLDTWCIMSPQNCCPQLQE--HSQQPCKQYNLCHRRSQDPFGDLLKKLMDQ 239 + + ++ C +S + + + + P K + + + Sbjct 220 LKNPVK--------CAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGNSFMIFCS 271 Query 240 IHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDA------LLI 293 ++ + L + ++S++ L L + + A + D + Sbjct 272 TCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPH 331 Query 294 HDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPE-NPKLE 352 D V D +D+ HR T + + + + E ++E Sbjct 332 VDVVVNFDIPTHSKDYIHRVGRTARAGRSGKA------------ITFVTQYDVELFQRIE 379 Query 353 MLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL--------LI 404 L F + + ++ T A ++ G + R I Sbjct 380 HLIGKKLPGFPTQDDE-VMMLTERVAEAQRFARMELREHGEKKKRSREDAGDNDDTEGAI 438 Query 405 GAGNSSQSTHMTQRD 419 G N M +R Sbjct 439 GVRNKVAGGKMKKRK 453 >sp|Q49Z29|CSHA_STAS1 DEAD-box ATP-dependent RNA helicase CshA OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41) OX=342451 GN=cshA PE=3 SV=1 Length=506 Score = 119 bits (297), Expect = 5e-27, Method: Composition-based stats. Identities = 61/361 (17%), Positives = 113/361 (31%), Gaps = 52/361 (14%) Query 213 QPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLE--MPELSRKFGTQMYEQQVVKLSEAAA 270 + P +L ++ + + + ++ FG ++Q+ L + Sbjct 62 EKVADQEGVQSLILAPTRELAMQVAESLKAFAKGQNIQVVTVFGGMPIDRQIKALKKGPQ 121 Query 271 LAGLQEQRVYA----LHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERR 326 + RV L+ + LI D + + + D + AE+R Sbjct 122 IVVGTPGRVIDHLNRRTLKTNDIHTLILDEADEMMNMGFIDDMKFIMD-----KIPAEQR 176 Query 327 LLALFD----DRKNELAHLATHGPENPK-----------------LEMLEKI--LQRQFS 363 LF L P K ++ LEK Sbjct 177 QTMLFSATMPKAIQTLVQQFMKSPVIVKTMNNEMSDPQIEEYYTIVKELEKFDTFTSFLD 236 Query 364 SSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEV 423 I+F RT++ L L + G +TQ + EV Sbjct 237 VHQPELAIVFGRTKRRVDELTSALISK--------------GYKAEGLHGDITQAKRLEV 282 Query 424 IQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFV 482 ++KF++ L++LVAT VA GLDI + V + + + S GR RA + A Sbjct 283 LKKFKNDQLDILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKKGVAIT 342 Query 483 ATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQREN 542 ++ + I + + Q A + +A+ D++ + R Sbjct 343 FVN---PIEMDYIRQIEQANKRQMTALRPPHRKEVLKARENDIKGKVQNWMSRDNEPRLQ 399 Query 543 Q 543 + Sbjct 400 R 400 Score = 56.0 bits (133), Expect = 8e-07, Method: Composition-based stats. Identities = 29/128 (23%), Positives = 50/128 (39%), Gaps = 5/128 (4%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEE 66 Q E I ALEGK+++ TG GKT A + +G + ++L L Q E Sbjct 29 QKESIPLALEGKDVLGQAQTGTGKTGAFGIPLIEKVADQEGVQSLILAPTRELAMQVAES 88 Query 67 FRRMLDGRW-TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF 125 + G+ V T+ G M L + +++ T + L ++ Sbjct 89 LKAFAKGQNIQVVTVFGGMPIDRQIKALKKGPQIVVGTPGRVIDHLNRRT----LKTNDI 144 Query 126 SLIVVDEC 133 +++DE Sbjct 145 HTLILDEA 152 >sp|Q29S22|DDX47_BOVIN Probable ATP-dependent RNA helicase DDX47 OS=Bos taurus OX=9913 GN=DDX47 PE=2 SV=1 Length=457 Score = 118 bits (295), Expect = 6e-27, Method: Composition-based stats. Identities = 52/277 (19%), Positives = 95/277 (34%), Gaps = 25/277 (9%) Query 275 QEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDR 334 + R+ + D +L L + + + + + + ++ Sbjct 177 EADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQT 236 Query 335 KNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQ 394 +L P K L IL +S +IF T + L L+ Sbjct 237 VEKLQQYYLFIPSKFKDTYLVYILNELAGNSF----MIFCSTCNNTQRTALLLRN----- 287 Query 395 TVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV 454 +G M+Q + + KF+ ++L+AT VA GLDIPH +VVV Sbjct 288 ---------LGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVV 338 Query 455 RYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQK 512 + + T+ + GR ARA +S A T+ EL + +E L+ + + Sbjct 339 NFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQR-----IEHLIGKKLPVFPT 393 Query 513 MDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPV 549 D R + + + + +R + V Sbjct 394 QDDEVMMLTERVTEAQRFARMELREHGEKKKRSREDV 430 Score = 62.5 bits (150), Expect = 7e-09, Method: Composition-based stats. Identities = 67/435 (15%), Positives = 135/435 (31%), Gaps = 54/435 (12%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT-RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q E I AL+G++II TG+GKT A + LET +VL L Q E Sbjct 53 QIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISE 112 Query 66 EFRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 +F + + G + + LA+ ++I T L L + + L Sbjct 113 QFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKG---FNLRA 169 Query 125 FSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQ---VLGLTASPGTGGASKLDGA 181 +V+DE ++ + + + +P+ +A+ A Sbjct 170 LKYLVMDEADR--------ILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAA 221 Query 182 INHVLQLCANLDTWCIMSPQNCCPQLQE--HSQQPCKQYNLCHRRSQDPFGDLLKKLMDQ 239 + + ++ C +S + + + + P K + + + Sbjct 222 LKNPVK--------CAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCS 273 Query 240 IHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDA------LLI 293 ++ + L + ++S++ L L + + A + D + Sbjct 274 TCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPH 333 Query 294 HDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPE-NPKLE 352 D V D +D+ HR T + + + + E ++E Sbjct 334 VDVVVNFDIPTHSKDYIHRVGRTARAGRSGKA------------ITFVTQYDVELFQRIE 381 Query 353 MLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL--------LI 404 L F + + ++ T A ++ G + R + I Sbjct 382 HLIGKKLPVFPTQDDE-VMMLTERVTEAQRFARMELREHGEKKKRSREDVGDNDDTEGAI 440 Query 405 GAGNSSQSTHMTQRD 419 G N M +R Sbjct 441 GVRNKVAGGKMKKRK 455 >sp|Q2UMH8|DBP3_ASPOR ATP-dependent RNA helicase dbp3 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=dbp3 PE=3 SV=1 Length=498 Score = 118 bits (296), Expect = 6e-27, Method: Composition-based stats. Identities = 39/209 (19%), Positives = 73/209 (35%), Gaps = 23/209 (11%) Query 335 KNELAHLATHGPENPKLEMLEKILQRQFSSSNSP-RGIIFTRTRQSAHSLLLWLQQQQGL 393 + + + K L ++L R P + + F ++ A + L+ + Sbjct 300 NTRIKQVVEVVKPHEKESRLVQLLNRSQRGVPEPEKVLAFCLYKKEAMRIERLLRTK--- 356 Query 394 QTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV 453 G + ++Q+++ + F+ G +LVAT VA GLDIP V Sbjct 357 -----------GFKVAGIHGDLSQQERFRSLDAFKTGAATVLVATDVAARGLDIPSVKQV 405 Query 454 VRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELIN------EALETLMEQ 505 + V GR RA +A + TE + LIN + + + + Sbjct 406 INVTFPLTVEDYVHRIGRTGRAGAEGHAVTLFTETDKAQSGALINVLRAAKQDIPEDLLK 465 Query 506 AVAAVQKMDQAEYQAKIRDLQQAALTKRA 534 V+K Y A +++ + Sbjct 466 FGTTVKKKQHDAYGAFFKNVDTDKTATKI 494 Score = 45.2 bits (105), Expect = 0.002, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 46/127 (36%), Gaps = 13/127 (10%) Query 17 GKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK-------VVVLVNRVHLVTQHGEEFRR 69 G+++I TG+GKT A + ++ K V++ L Q ++ + Sbjct 117 GRDVIGIAETGSGKTLAFGLPCLKKIQDSAMTKQKPYRPLAVIISPTRELAMQIYDQLLK 176 Query 70 MLDGR-WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLI 128 V + G + L + +++ T L+ + + V+L + Sbjct 177 FSGSVGVRVACVFGGVRKEEQREAL-KTAGVVVATPGRLKD----LQNDGSVDLGKVKYL 231 Query 129 VVDECHH 135 V+DE Sbjct 232 VLDEADR 238 >sp|Q8L4E9|RH36_ORYSJ DEAD-box ATP-dependent RNA helicase 36 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0633500 PE=3 SV=1 Length=501 Score = 118 bits (295), Expect = 7e-27, Method: Composition-based stats. Identities = 44/219 (20%), Positives = 80/219 (37%), Gaps = 18/219 (8%) Query 338 LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD 397 L L H P + K L +L + + N I+F T ++ L L++ Sbjct 293 LKQLYIHVPPDAKELYLFYLLSKM-NEDNIRSVIVFVSTCRTCQYLDFLLEE-------- 343 Query 398 IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG 457 +G S +H Q + + F+ + +L+AT VA GLDI ++V+ Y Sbjct 344 ------LGHPAVSLHSHKPQSRRLAALHNFKSSKVPVLLATDVASRGLDIQTVDLVINYD 397 Query 458 LLTNEISMVQARGR-ARADQSV--YAFVATEGSRELKRELINEALETLMEQAVAAVQKMD 514 + + GR ARA + +F+ T+ L E+ + + L Sbjct 398 VPRYPRDYIHRVGRTARATRGGLSISFITTQRDIRLLHEIEDVVGKQLGAYDGEMRDVNK 457 Query 515 QAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQ 553 A K R L + + + + Q+ + + Sbjct 458 DATKVFKARRLANMKMADEGHEDKVQARKEQKKRAQERK 496 Score = 53.3 bits (126), Expect = 6e-06, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 45/131 (34%), Gaps = 3/131 (2%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE 65 Q I ALEG++++ TG+GKT A A L + L L Q E Sbjct 104 QRRCIPRALEGRDVLGIAETGSGKTAAFALPILHRLGEDPYGVAALALAPTRELAAQLAE 163 Query 66 EFRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 +FR + G LAR +++ T + + + V Sbjct 164 QFRALGAPLGLRCLAAIGGFDSLGQAKGLARRPHVVVATPGRIATLINDDPDLAKV-FAR 222 Query 125 FSLIVVDECHH 135 +V+DE Sbjct 223 TKFLVLDEADR 233 >sp|Q9DF35|DD21A_XENLA Nucleolar RNA helicase 2-A OS=Xenopus laevis OX=8355 GN=ddx21-a PE=2 SV=2 Length=759 Score = 120 bits (300), Expect = 8e-27, Method: Composition-based stats. Identities = 62/316 (20%), Positives = 111/316 (35%), Gaps = 50/316 (16%) Query 204 CPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVV 263 + QQP + P +L ++ ++I + ++S +G Y+QQV Sbjct 237 LVEKLNEDQQPLARGRAPRVIILTPTRELAIQITNEIRSITKKLKVSCFYGGTPYQQQVF 296 Query 264 KLSEAAALAGLQEQRVYALHLRRYND-----ALLIHDTVRAVD------ALAALQDFYHR 312 + + RV L D +++ + D L Y Sbjct 297 AIKDGIDFLVGTPGRVRDLVQNYRLDLTTLKHVVLDEVDMMFDMGFSEQVEEILSVRYKA 356 Query 313 EHVTKTQILC------------AERRLLALFDD----------RKNELAHLATHGPENPK 350 + Q L A++ + F+ + HLA + K Sbjct 357 DPEENPQTLLFSATCPDWMYNMAKKYMRKQFEKIDLIGHRSQKAATTVEHLAIECTRSQK 416 Query 351 LEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSS 410 +L ++Q S + + IIF ++ AH+L L S Sbjct 417 AAVLGDLVQVY--SGSHGKTIIFCDSKLEAHTLAT-------------SCGSL-KQSAKS 460 Query 411 QSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARG 470 + Q++++ V++ F+ GT +L+AT+VA GLDIP ++VV Y + V G Sbjct 461 LHGDLQQKEREVVLKGFRQGTFEVLIATNVAARGLDIPEVDLVVLYSAPKEADAYVHRSG 520 Query 471 R-ARADQSVYAFVATE 485 R RA ++ E Sbjct 521 RTGRAGRTGVCISLYE 536 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 53/133 (40%), Gaps = 12/133 (9%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRH------LETVDGAKVVVLVNRVHL 59 Q + A GK++++ TG GKT + A + ++ L +V++L L Sbjct 206 QSKTFHTAYSGKDVVVQARTGTGKTFSFAIPLVEKLNEDQQPLARGRAPRVIILTPTREL 265 Query 60 VTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 Q E R + + V+ G + + D L+ T ++ + + Sbjct 266 AIQITNEIRSITK-KLKVSCFYGGTPYQQQVFAIKDGIDFLVGTPGRVRDLVQNYR---- 320 Query 120 VELTVFSLIVVDE 132 ++LT +V+DE Sbjct 321 LDLTTLKHVVLDE 333 >sp|Q59W52|PRP28_CANAL Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=PRP28 PE=3 SV=2 Length=581 Score = 119 bits (297), Expect = 9e-27, Method: Composition-based stats. Identities = 37/156 (24%), Positives = 66/156 (42%), Gaps = 15/156 (10%) Query 329 ALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQ 388 D+ L++ E K L KI++ + + +P IIF + SL Sbjct 403 EALDNISQSFEFLSSATTEATKFNKLIKIIRSHWRVTENPLIIIFANFKHVCDSLS---- 458 Query 389 QQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIP 448 Q L + DI ++ G+ +Q +++ I F++ +L+AT VA G+DIP Sbjct 459 --QELSSNDINNVVIHGSK--------SQDMREQAITNFRNHESEVLIATDVAARGIDIP 508 Query 449 HCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVA 483 + +V+ Y ++ + GR RA +F Sbjct 509 NVTLVINYQMVKKFDEYIHRIGRTGRAGNLGESFTF 544 Score = 45.6 bits (106), Expect = 0.001, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 53/136 (39%), Gaps = 19/136 (14%) Query 14 ALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-----KV------VVLVNRVHLVTQ 62 AL+ ++++ TG+GKT A ++ ++D K+ ++L L Q Sbjct 202 ALKKRDVVGVAETGSGKTLAFLIPVLNYILSIDENYLKYEKISNEPVGLILAPTRELALQ 261 Query 63 ---HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 E+F + L + + + G L++ T L ++ E + Sbjct 262 ITKEAEKFCKKLGYQV-LPIIGGHHYQDTINKIDQTGVHLIVATPGRLVDSI----ERKI 316 Query 120 VELTVFSLIVVDECHH 135 V+L+ +V+DE Sbjct 317 VDLSKCYCLVMDEADR 332 >sp|P0CQ92|DRS1_CRYNJ ATP-dependent RNA helicase DRS1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=DRS1 PE=3 SV=2 Length=793 Score = 119 bits (299), Expect = 1e-26, Method: Composition-based stats. Identities = 58/294 (20%), Positives = 109/294 (37%), Gaps = 52/294 (18%) Query 289 DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFD----DRKNELAHLATH 344 D L+I + R ++A + + + C R LF D +EL L+ Sbjct 359 DVLVIDEADRMLEA-------GFTDELEEIIKACPRSRQTMLFSATMTDSVDELVKLSLD 411 Query 345 GP----ENPKLEMLEKILQRQFSSSNSP----------------RGIIFTRTRQSAHSLL 384 P +PK + Q + + IIF R++ AH + Sbjct 412 KPIRVFVDPKRNTARGLTQEFVRIRSDDSRSPSLLALCKRTIREKCIIFFRSKALAHQMR 471 Query 385 LWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEG 444 + L G + ++TQ + + + F+ GT++ L+AT +A G Sbjct 472 IVFG--------------LFGLKAAELHGNLTQEQRLQALNDFKAGTVDYLLATDLASRG 517 Query 445 LDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETL 502 LDI V+ Y + GR ARA + + + E R++ + I +A Sbjct 518 LDIKGVETVINYDMPGQLAQYTHRVGRTARAGRKGRSVSLVGEADRKMLKAAIKQAEADQ 577 Query 503 MEQAVAAVQ-----KMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEH 551 + + + K E++ I+++ + ++ + A E ++ Q VEH Sbjct 578 VRHRIIPSEAVTAMKEKLEEFKDDIQEILKEEKEEKLLRQADMEIKKGQNMVEH 631 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 35/138 (25%), Positives = 48/138 (35%), Gaps = 12/138 (9%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK------VVVLVNRVHLV 60 Q I AL G++I+ TG+GKT A L D K V+VL L Sbjct 234 QARAIPLALLGRDILGSAVTGSGKTAAFMVPILERLCYRDRGKGGAACRVLVLCPTRELA 293 Query 61 TQHG---EEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE 117 Q + L G + A L D+LI T L LT+ Sbjct 294 VQCEAVGKALAEKGGLDVRFALLVGGLSLNAQAHTLRTLPDILIATPGRLIDHLTNTPS- 352 Query 118 EHVELTVFSLIVVDECHH 135 L+ ++V+DE Sbjct 353 --FTLSALDVLVIDEADR 368 >sp|Q5HK76|HSDR_STAEQ Type I restriction enzyme SepRPIP endonuclease subunit OS=Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A) OX=176279 GN=hsdR PE=3 SV=1 Length=930 Score = 120 bits (300), Expect = 1e-26, Method: Composition-based stats. Identities = 43/185 (23%), Positives = 70/185 (38%), Gaps = 18/185 (10%) Query 1 MELRSYQWEVIM----PALE-GKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVN 55 M LR YQ + ALE N IW TG+GKT + ++ + + KV+ LV+ Sbjct 239 MALRPYQVYAVEAILNRALETNNNGYIWHTTGSGKTLTSFKASQLLSQEENIKKVIFLVD 298 Query 56 RVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE 115 R L Q EF + + T + + + L L++ T + + A+ S Sbjct 299 RKDLDNQTLAEFNKFQEDSVDFTDNTRKLLKQLADPTLP----LIVTTIQKMANAVKSNH 354 Query 116 EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGA 175 + ++DECH T ++ +I + Q G T +P Sbjct 355 SVMESYKQDKVIFIIDECHRTQFGDMHRLIKQHF---------ENAQYFGFTGTPRFEEN 405 Query 176 SKLDG 180 DG Sbjct 406 KSQDG 410 >sp|A1D6X9|DBP8_NEOFI ATP-dependent RNA helicase dbp8 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dbp8 PE=3 SV=1 Length=526 Score = 118 bits (295), Expect = 1e-26, Method: Composition-based stats. Identities = 47/209 (22%), Positives = 82/209 (39%), Gaps = 23/209 (11%) Query 338 LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD 397 L P + L +L + S IIF ++A L L++ Sbjct 324 LKQTYLKVPLTHREAFLHVLLST--EDNASRPAIIFCNHTKTADLLERMLRR-------- 373 Query 398 IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG 457 + +S + + Q ++ + +F+ +LVAT VA GLDIP ++V+ Y Sbjct 374 ------LTHRVTSLHSLLPQSERNANLARFRASAARILVATDVASRGLDIPTVSLVINYD 427 Query 458 LLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQA 516 + N V GR ARA +S A G R+++ L A+E + + + + + Sbjct 428 VPRNPDDYVHRVGRTARAGRSGEAITLV-GQRDVQLVL---AIEERVGRQMEEWSEEGVS 483 Query 517 EYQAKIRD--LQQAALTKRAAQAAQRENQ 543 +R L++ KR A E + Sbjct 484 IEGRLVRTGVLKEVGEAKREAMGEIDEGR 512 Score = 55.6 bits (132), Expect = 1e-06, Method: Composition-based stats. Identities = 42/257 (16%), Positives = 81/257 (32%), Gaps = 27/257 (11%) Query 15 LEGKNIIIWLPTGAGKTRAAAYV--AKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLD 72 L+G++ I TG+GKT A V ++ E G VVL L Q E+ + + Sbjct 131 LKGRDCIGGSRTGSGKT-IAFSVPMLQKWAEDPFGIFGVVLTPTRELALQIFEQIKAISA 189 Query 73 GRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVD 131 + ++G R LA ++I T L + S E+ L ++V+D Sbjct 190 PQSMKPVLITGGTDMRPQAIALAGRPHVVIATPGRLADHIKSSGEDTVCGLKRVRMVVLD 249 Query 132 ECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS-----------PGTGGASKL-- 178 E +++ L Q L TA+ P + + Sbjct 250 EADRLLASGPGSMLPDVETCLSALPPSSERQTLLFTATVTPEVRALKNMPRSANKPPVFV 309 Query 179 -DGAINHVLQLCANLDTWCIMSPQNCCPQLQE-------HSQQPCKQYNLCHRRSQDPFG 230 + + + + L + P ++ +P + C+ Sbjct 310 TEISTENQGSIPPTLKQTYLKVPLTHREAFLHVLLSTEDNASRPAIIF--CNHTKTADLL 367 Query 231 DLLKKLMDQIHDHLEMP 247 + + + + L Sbjct 368 ERMLRRLTHRVTSLHSL 384 >sp|P0CQ93|DRS1_CRYNB ATP-dependent RNA helicase DRS1 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=DRS1 PE=3 SV=1 Length=808 Score = 119 bits (299), Expect = 1e-26, Method: Composition-based stats. Identities = 58/294 (20%), Positives = 109/294 (37%), Gaps = 52/294 (18%) Query 289 DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFD----DRKNELAHLATH 344 D L+I + R ++A + + + C R LF D +EL L+ Sbjct 374 DVLVIDEADRMLEA-------GFTDELEEIIKACPRSRQTMLFSATMTDSVDELVKLSLD 426 Query 345 GP----ENPKLEMLEKILQRQFSSSNSP----------------RGIIFTRTRQSAHSLL 384 P +PK + Q + + IIF R++ AH + Sbjct 427 KPIRVFVDPKRNTARGLTQEFVRIRSDDSRSPSLLALCKRTIREKCIIFFRSKALAHQMR 486 Query 385 LWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEG 444 + L G + ++TQ + + + F+ GT++ L+AT +A G Sbjct 487 IVFG--------------LFGLKAAELHGNLTQEQRLQALNDFKAGTVDYLLATDLASRG 532 Query 445 LDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETL 502 LDI V+ Y + GR ARA + + + E R++ + I +A Sbjct 533 LDIKGVETVINYDMPGQLAQYTHRVGRTARAGRKGRSVSLVGEADRKMLKAAIKQAEADQ 592 Query 503 MEQAVAAVQ-----KMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEH 551 + + + K E++ I+++ + ++ + A E ++ Q VEH Sbjct 593 VRHRIIPSEAVTAMKEKLEEFKDDIQEILKEEKEEKLLRQADMEIKKGQNMVEH 646 Score = 52.5 bits (124), Expect = 1e-05, Method: Composition-based stats. Identities = 35/138 (25%), Positives = 48/138 (35%), Gaps = 12/138 (9%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK------VVVLVNRVHLV 60 Q I AL G++I+ TG+GKT A L D K V+VL L Sbjct 249 QARAIPLALLGRDILGSAVTGSGKTAAFMVPILERLCYRDRGKGGAACRVLVLCPTRELA 308 Query 61 TQHG---EEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE 117 Q + L G + A L D+LI T L LT+ Sbjct 309 VQCEAVGKALAEKGGLDVRFALLVGGLSLNAQAHTLRTLPDILIATPGRLIDHLTNTPS- 367 Query 118 EHVELTVFSLIVVDECHH 135 L+ ++V+DE Sbjct 368 --FTLSALDVLVIDEADR 383 >sp|Q887N8|RHLB_PSESM ATP-dependent RNA helicase RhlB OS=Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000) OX=223283 GN=rhlB PE=3 SV=1 Length=397 Score = 116 bits (290), Expect = 1e-26, Method: Composition-based stats. Identities = 57/337 (17%), Positives = 120/337 (36%), Gaps = 56/337 (17%) Query 205 PQLQEHSQQPCKQYNLCHR-RSQDPFGDLLKKLMDQIHDHLEMPELS--RKFGTQMYEQQ 261 + + P ++Y R P +L+ ++ D + L+ G +++Q Sbjct 67 IEQLTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQ 126 Query 262 VVKLSEA-AALAGLQEQRVYALHLRRYN-----DALLIHDTVRAVDALAALQDFYHREHV 315 + +L + R+ + R + +++ + R +D + + R+ + Sbjct 127 LKQLEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLD-MGFIPQ--VRQII 183 Query 316 TKTQILCAERRLL--ALFDDRKNELAHLATHGPENPKLEML------------------- 354 +T + LL A F + LA T P ++E L Sbjct 184 RQTPHKGERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAGADK 243 Query 355 EKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH 414 K+L + + R ++F + + L + G + S Sbjct 244 YKLLYNLVTDNGWERVMVFANRKDEVRRIEERLVRD--------------GVNAAQLSGD 289 Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR---GR 471 + Q + + ++ F++G + +LVAT VA G+ I + V+ + L V GR Sbjct 290 VPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGR 349 Query 472 ARADQSVYAFVATEGSRELKRELINEALETLMEQAVA 508 A AD +F + S +L A+E + + ++ Sbjct 350 AGADGVSISFAGEDDSYQLP------AIEEKLGRKIS 380 Score = 50.6 bits (119), Expect = 3e-05, Method: Composition-based stats. Identities = 29/140 (21%), Positives = 49/140 (35%), Gaps = 16/140 (11%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG--------AKVVVLVNRVH 58 Q V+ L+GK+ I TG GKT A L + +++ Sbjct 35 QAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQLTQTPPPAERYMGEPRALIIAPTRE 94 Query 59 LVTQ---HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE 115 LV Q + + + +T + G + AR D+L+ T L Sbjct 95 LVVQIAKDAADLTKYTNLNV-MTFVGGMDFDKQLKQLEARHCDILVATPGRLLD----FN 149 Query 116 EEEHVELTVFSLIVVDECHH 135 + V L + ++V+DE Sbjct 150 QRGEVHLDMVEVMVLDEADR 169 >sp|Q88NB7|RHLB_PSEPK ATP-dependent RNA helicase RhlB OS=Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440) OX=160488 GN=rhlB PE=3 SV=1 Length=398 Score = 116 bits (290), Expect = 1e-26, Method: Composition-based stats. Identities = 52/337 (15%), Positives = 109/337 (32%), Gaps = 48/337 (14%) Query 208 QEHSQQPCKQYNLCHR-RSQDPFGDLLKKLMDQIHDHLEMPELS--RKFGTQMYEQQVVK 264 + + P ++Y R P +L+ ++ + L+ G +++Q+ Sbjct 71 LQQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMSFVGGMDFDKQLKA 130 Query 265 LSEA-AALAGLQEQRVYALHLRRYN-----DALLIHDTVRAVDALAALQDFYHREHVTKT 318 L + R+ + R + +++ + R +D + + T Sbjct 131 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLD-MGFIPQVRQIIRQTPP 189 Query 319 QILCAERRLLALFDDRKNELAHLATHGPENPKLE-------------------MLEKILQ 359 + A F D LA T P ++E K+L Sbjct 190 KSERQTLLFSATFTDDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAGSDKYKLLY 249 Query 360 RQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRD 419 + + R ++F + + L + G + S + Q Sbjct 250 NLVTQNKWERVMVFANRKDEVRRIEEKLVRD--------------GINAAQLSGDVPQHK 295 Query 420 QQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSV 478 + ++ F++G + +LVAT VA G+ I + V+ + L + V GR RA S Sbjct 296 RIRTLESFREGRITVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGTSG 355 Query 479 YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQ 515 + + A+E L+ + + D+ Sbjct 356 VSISFAGEDDSYQ----LPAIEALLGRKIKCEMPPDE 388 Score = 51.7 bits (122), Expect = 2e-05, Method: Composition-based stats. Identities = 30/141 (21%), Positives = 47/141 (33%), Gaps = 18/141 (13%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK--------VVVLVNRVH 58 Q +V+ L G++ I TG GKT A L+ K +++ Sbjct 36 QAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIISQLQQTPPPKERYMGEPRALIIAPTRE 95 Query 59 LVTQ---HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCH-DLLICTAELLQMALTSP 114 LV Q + V + G M L H D+L+ T L Sbjct 96 LVVQIAKDAAALTKYTGL--NVMSFVGGMDFDKQLKALEARHCDILVATPGRLLD----F 149 Query 115 EEEEHVELTVFSLIVVDECHH 135 + V L + ++V+DE Sbjct 150 NQRGEVHLDMVEVMVLDEADR 170 >sp|A5DU73|PRP28_LODEL Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) OX=379508 GN=PRP28 PE=3 SV=1 Length=597 Score = 118 bits (296), Expect = 1e-26, Method: Composition-based stats. Identities = 35/160 (22%), Positives = 66/160 (41%), Gaps = 16/160 (10%) Query 329 ALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQ 388 D+ +L+T+ E+ +L L K++Q + + IIF + L L L+ Sbjct 424 EALDNIDQHFDYLSTYA-ESARLSKLIKVVQGHKRRNRNALVIIFANFKHVCDVLSLELE 482 Query 389 QQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIP 448 Q L N +Q ++E ++ F+ +LVAT VA G+D+P Sbjct 483 QNNLL--------------NVVIHGSKSQEAREEALEDFRTHQAPILVATDVAARGIDVP 528 Query 449 HCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGS 487 + ++V+ Y + + GR RA ++ + + Sbjct 529 NVSLVINYQMSKKFDEYIHRIGRTGRAGNLGESYTFLDDA 568 Score = 47.5 bits (111), Expect = 3e-04, Method: Composition-based stats. Identities = 26/139 (19%), Positives = 51/139 (37%), Gaps = 21/139 (15%) Query 14 ALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-----------KVVVLVNRVHLVTQ 62 +LE ++++ TG+GKT A +L VDG +VL L Q Sbjct 219 SLELRDVVGVAETGSGKTLAFLLPLLHYLSRVDGNYLNYEKVRNEPLALVLAPTRELALQ 278 Query 63 HGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLA-----RCHDLLICTAELLQMALTSPEE 116 +E + + V ++ G + + R +++ T L ++ E Sbjct 279 ITQEAEKFGKQLGFNVLSIIGGRQYQETMDQIDNMIVGRGVHIVVGTPGRLLDSV----E 334 Query 117 EEHVELTVFSLIVVDECHH 135 + + + +V+DE Sbjct 335 RKILNFSKCYYLVMDEADR 353 >sp|Q4JG17|VASAL_PENVA Probable ATP-dependent RNA helicase vasa-like OS=Penaeus vannamei OX=6689 GN=vasa PE=2 SV=2 Length=703 Score = 119 bits (298), Expect = 1e-26, Method: Composition-based stats. Identities = 36/158 (23%), Positives = 66/158 (42%), Gaps = 17/158 (11%) Query 346 PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 P+ K L ++ + S++ + ++F ++ A + +L +++ RA + G Sbjct 495 PKFEKKAKLVEMCEEILISADDEKILVFVEQKRVADFVGTYLCEKK------FRATTMHG 548 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465 Q +++ + +F+ G N+LVAT+V GLDI VVV Y L + Sbjct 549 --------DRYQAQREQALSEFRTGVHNILVATAVTARGLDIKGIGVVVNYDLPKDIDEY 600 Query 466 VQARGRARA---DQSVYAFVATEGSRELKRELINEALE 500 V GR +F E L ++L+ E Sbjct 601 VHRIGRTGRLGNRGLSISFYDDETDACLTKDLVKVLSE 638 Score = 47.1 bits (110), Expect = 5e-04, Method: Composition-based stats. Identities = 31/142 (22%), Positives = 49/142 (35%), Gaps = 19/142 (13%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRH-LETVDGAKVV---------VLVNR 56 Q I + G++I+ TG+GKT A + L+ + V+ Sbjct 288 QKYTIPNVMNGRDIMACAQTGSGKTAAFLLPMLHYILDNNCPSNAFEEPAQPTGLVICPT 347 Query 57 VHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCH---DLLICTAELLQMALTS 113 L Q E R+ +V G AGF L H +L+ T L L Sbjct 348 RELAIQIMREARKFS--HSSVAKCCVAYGGAAGFHQLKTIHSGCHILVATPGRLLDFL-- 403 Query 114 PEEEEHVELTVFSLIVVDECHH 135 E+ + + +V+DE Sbjct 404 --EKGKIVFSSLKYLVLDEADR 423 >sp|A5DF03|PRP28_PICGU Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=PRP28 PE=3 SV=2 Length=575 Score = 118 bits (296), Expect = 1e-26, Method: Composition-based stats. Identities = 55/352 (16%), Positives = 117/352 (33%), Gaps = 29/352 (8%) Query 145 IMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLD-TWCIMSPQNC 203 I Y+E++ ++ L +VLGL +P A ++ + + L + + Sbjct 215 IDKDYMEVEHKQESNLNKVLGLVLAPTRELALQIS---KEAKKFASVLGYNVVTIIGGHQ 271 Query 204 CPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVV 263 + + Q R D L L H ++ + G + Q ++ Sbjct 272 YEETVKSVQDGAHIVVATPGRLIDSAEKGLIDLSQCYHLTMDEADRMIDMGFEKALQSIL 331 Query 264 KLSEAAALAGLQEQRVY---ALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQI 320 + + +G + A + + + + + Sbjct 332 SFLPSTSSSGFGLDSTIFKVKSRITLMFTATISPPIEKITKDYLQTPAYLYIGDAGEIVD 391 Query 321 LCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSA 380 ++ + E + P+ + L++ + P IIF +++ Sbjct 392 NINQKFEYLGDNVDSQEELNA-------PRTNKMISALRQHIRETEQPLIIIFANFKRTC 444 Query 381 HSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSV 440 L + L Q + I +Q ++ I F++ +N+L+AT V Sbjct 445 ELLSVELSNQNVGSNIVIHGS-------------KSQEARESAIASFREHKVNVLIATDV 491 Query 441 AEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSREL 490 A G+DIP+ ++VV Y + + GR RA +S + +G E+ Sbjct 492 AARGIDIPNVSLVVNYHMPKRFDEYIHRIGRTGRAGKSGASLSFVDDGDSEI 543 Score = 41.7 bits (96), Expect = 0.021, Method: Composition-based stats. Identities = 26/145 (18%), Positives = 50/145 (34%), Gaps = 20/145 (14%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKV---------------V 51 Q I AL ++++ TG+GKT A +L +D + + Sbjct 177 QRAAIPTALGHRDVVGIAETGSGKTLAFLIPLLSYLSAIDKDYMEVEHKQESNLNKVLGL 236 Query 52 VLVNRVHLVTQHGEEFRRM-LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMA 110 VL L Q +E ++ + V T+ G + +++ T L Sbjct 237 VLAPTRELALQISKEAKKFASVLGYNVVTIIGGHQYEETVKSVQDGAHIVVATPGRLID- 295 Query 111 LTSPEEEEHVELTVFSLIVVDECHH 135 E+ ++L+ + +DE Sbjct 296 ---SAEKGLIDLSQCYHLTMDEADR 317 >sp|Q2GUI4|DBP3_CHAGB ATP-dependent RNA helicase DBP3 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=DBP3 PE=3 SV=1 Length=566 Score = 118 bits (295), Expect = 1e-26, Method: Composition-based stats. Identities = 39/198 (20%), Positives = 69/198 (35%), Gaps = 18/198 (9%) Query 296 TVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLE 355 +VR + + E + P K + L Sbjct 381 SVRGLAEGFMIDPVKATIGNRTRAGEEGEGNGSTELQANIRIEQKVEVVDPRG-KEQRLL 439 Query 356 KILQR-QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH 414 ++L+ Q S+ + R ++F ++ A + L+++ G S Sbjct 440 ELLKEAQKGSAKNDRILVFCLYKKEAVRVEQNLERR--------------GIRVCSIHGD 485 Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR 473 + Q + ++ F+ GT ++LVAT VA GLDIP +V+ V GR R Sbjct 486 LRQDQRTRSLESFKAGTTSVLVATDVAARGLDIPEVKLVINVTFPLTIEDYVHRIGRTGR 545 Query 474 ADQSVYAF-VATEGSREL 490 A + A + TE + Sbjct 546 AGKKGKAITLFTEHDKSH 563 Score = 59.0 bits (141), Expect = 9e-08, Method: Composition-based stats. Identities = 54/251 (22%), Positives = 84/251 (33%), Gaps = 26/251 (10%) Query 14 ALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG-----------AKVVVLVNRVHLVTQ 62 AL G+++I TG+GKT A A L + A+ VV+ L Q Sbjct 215 ALSGRDVIGIAETGSGKTMAFAVPCIESLASSPKPNHAKGDRTAYARAVVVSPTRELAMQ 274 Query 63 HGEEFRRM--LDGRWTVTTLSGDMGPRAGFGHLARCH---DLLICTAELLQMALTSPEEE 117 + L G V G P+ L R + D+++ T L+ L+ E Sbjct 275 THAAMSSLASLVGLSVVCLYGGA--PKDDQRALLRKNSGADIIVATPGRLKDFLS----E 328 Query 118 EHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS-PGTGGAS 176 V L+ V+DE I L L R + Q L TA+ P + Sbjct 329 GCVSLSDVMFAVLDEADRMLDKGFEEDIK---LILGSCRPREKRQTLMFTATWPTSVRGL 385 Query 177 KLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKL 236 I+ V N N +LQ + + K + R + +LLK+ Sbjct 386 AEGFMIDPVKATIGNRTRAGEEGEGNGSTELQANIRIEQKVEVVDPRGKEQRLLELLKEA 445 Query 237 MDQIHDHLEMP 247 + + Sbjct 446 QKGSAKNDRIL 456 >sp|Q4L7W0|CSHA_STAHJ DEAD-box ATP-dependent RNA helicase CshA OS=Staphylococcus haemolyticus (strain JCSC1435) OX=279808 GN=cshA PE=3 SV=1 Length=503 Score = 117 bits (293), Expect = 1e-26, Method: Composition-based stats. Identities = 58/327 (18%), Positives = 103/327 (31%), Gaps = 50/327 (15%) Query 245 EMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYA----LHLRRYNDALLIHDTVRAV 300 + ++ FG ++Q+ L + RV L+ LI D + Sbjct 96 QNVQVVTVFGGMPIDRQIKALKRGPQIVVGTPGRVIDHLNRRTLKTNGIHTLILDEADEM 155 Query 301 DALAALQDFYHREHVTKTQILCAERRLLALFD----DRKNELAHLATHGPENPK------ 350 + + D + AE+R LF L P+ K Sbjct 156 MNMGFIDDMRFIMD-----KIPAEQRQTMLFSATMPKAIQTLVQQFMKSPQIVKTMNNEM 210 Query 351 -----------LEMLEKI--LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD 397 ++ LEK I+F RT++ L L + Sbjct 211 SDPQIDEYYTIVKELEKFDTFTNFLDVHQPELAIVFGRTKRRVDELTSALLSK------- 263 Query 398 IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG 457 G +TQ + EV++KF++ +++LVAT VA GLDI + V + Sbjct 264 -------GYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDISGVSHVYNFD 316 Query 458 LLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQA 516 + + S GR RA + A I ++ M +K Sbjct 317 IPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDSNGRRMNALRPPHRK---E 373 Query 517 EYQAKIRDLQQAALTKRAAQAAQRENQ 543 +A+ D++ + ++ R + Sbjct 374 VLKAREDDIKDKVKNWMSRESEARLKR 400 Score = 51.3 bits (121), Expect = 2e-05, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 49/128 (38%), Gaps = 5/128 (4%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEE 66 Q + I LEGK+I+ TG GKT A + G + ++L L Q E+ Sbjct 29 QKDSIPYTLEGKDILGQAQTGTGKTGAFGIPLIEKVVGQSGVQALILAPTRELAMQVAEQ 88 Query 67 FRRMLDGR-WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF 125 R G+ V T+ G M L R +++ T + L ++ Sbjct 89 LREFSRGQNVQVVTVFGGMPIDRQIKALKRGPQIVVGTPGRVIDHLNRRT----LKTNGI 144 Query 126 SLIVVDEC 133 +++DE Sbjct 145 HTLILDEA 152 >sp|Q54TJ4|DDX27_DICDI Probable ATP-dependent RNA helicase ddx27 OS=Dictyostelium discoideum OX=44689 GN=ddx27 PE=3 SV=1 Length=783 Score = 119 bits (297), Expect = 2e-26, Method: Composition-based stats. Identities = 72/417 (17%), Positives = 148/417 (35%), Gaps = 51/417 (12%) Query 169 SPGTGGASKLDGAINHVLQLCA--NLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQ 226 +P A L +L + + T + P ++ + + L R Sbjct 214 TPIQAKAIPLALNGKDILASASTGSGKTAAFLLPVLERLLFRDSEYRAIRVLILLPTREL 273 Query 227 DPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR 286 + + + Q + + G + Q V+L ++ + R+ HL Sbjct 274 ALQCQSVMENLAQFSNITSCLIV----GGLSNKAQEVELRKSPDVVIATPGRLID-HLLN 328 Query 287 YNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFD----DRKNELAHLA 342 + L + +D L D ++ + K C R LF D LA L+ Sbjct 329 AHGIGLDDLEILILDEADRLLDMGFKDEINKIVESCPTNRQTMLFSATLNDEVKTLAKLS 388 Query 343 THGPENPKLEMLEKI---LQRQF--------------------SSSNSPRGIIFTRTRQS 379 P +++ L ++ L+++F N IIF R+++ Sbjct 389 LQQPIRVQVDALMQVTSTLEQEFVKIKPQHLSDRPAILLSLCTRVFNQGGTIIFCRSKKE 448 Query 380 AHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATS 439 H L + D++A L G +++Q + + +Q+F+DG +N L+A+ Sbjct 449 VHRLRII------FGLSDLKAAELHG--------NLSQEQRFDSLQQFRDGQVNYLLASD 494 Query 440 VAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARAD-QSVYAFVATEGSRELKRELINE 497 VA GLDI V+ Y + N + + GR ARA T+ R+L ++++ + Sbjct 495 VASRGLDIIGVKTVINYNMPNNMANYIHRVGRTARAGMDGKSCSFITDNDRKLLKDIVTK 554 Query 498 ALETLMEQAVAAVQ-KMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQ 553 A ++V+ + + D++ + ++ + + + Sbjct 555 ARNKAKSRSVSQDNVNFWRNRIEELTEDIKSIVREEMKEADLRKAEKTLDKAEKIIS 611 Score = 58.3 bits (139), Expect = 2e-07, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 51/134 (38%), Gaps = 8/134 (6%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA----KVVVLVNRVHLVTQ 62 Q + I AL GK+I+ TG+GKT A L D +V++L+ L Q Sbjct 217 QAKAIPLALNGKDILASASTGSGKTAAFLLPVLERLLFRDSEYRAIRVLILLPTRELALQ 276 Query 63 HGEEFRRMLDGRW-TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVE 121 + T + G + +A L + D++I T L L + Sbjct 277 CQSVMENLAQFSNITSCLIVGGLSNKAQEVELRKSPDVVIATPGRLIDHLLNAHGIG--- 333 Query 122 LTVFSLIVVDECHH 135 L ++++DE Sbjct 334 LDDLEILILDEADR 347 >sp|Q9HXE5|RHLB_PSEAE ATP-dependent RNA helicase RhlB OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=rhlB PE=3 SV=1 Length=397 Score = 115 bits (288), Expect = 2e-26, Method: Composition-based stats. Identities = 65/378 (17%), Positives = 127/378 (34%), Gaps = 65/378 (17%) Query 162 QVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLC 221 QVLG T G + A + A L + QL + + P ++Y Sbjct 38 QVLGFT----LRGQDAIGRAQTGTGKTAAFLISIIT--------QLLQ-TPPPKERYMGE 84 Query 222 HR-RSQDPFGDLLKKLMDQIHDHLEMPELS--RKFGTQMYEQQVVKLSEA-AALAGLQEQ 277 R P +L+ ++ + L+ G +++Q+ +L + Sbjct 85 PRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPG 144 Query 278 RVYALHLRRYN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLL--AL 330 R+ + R + +++ + R +D + + R+ + +T + LL A Sbjct 145 RLLDFNQRGEVHLDMVEVMVLDEADRMLD-MGFIPQ--VRQIIRQTPHKGERQTLLFSAT 201 Query 331 FDDRKNELAHLATHGPENPKLE-------------------MLEKILQRQFSSSNSPRGI 371 F D LA T P ++E K+L + +N R + Sbjct 202 FTDDVMNLAKQWTVDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLVAQNNWERVM 261 Query 372 IFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGT 431 +F + + L + G + S + Q + ++ F++G Sbjct 262 VFANRKDEVRRIEERLTKD--------------GISAAQMSGDVPQHKRIRTLEGFREGK 307 Query 432 LNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSREL 490 + +LVAT VA G+ I + V+ + L + V GR RA S + Sbjct 308 IRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGTSISFAGEDDAF 367 Query 491 KRELINEALETLMEQAVA 508 +E L+ + + Sbjct 368 A----LPPIEELLGRKIT 381 Score = 52.9 bits (125), Expect = 5e-06, Method: Composition-based stats. Identities = 30/141 (21%), Positives = 52/141 (37%), Gaps = 18/141 (13%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAY--VAKRHLETVDGA-------KVVVLVNRV 57 Q +V+ L G++ I TG GKT AA + + L+T + +++ Sbjct 36 QAQVLGFTLRGQDAIGRAQTGTGKT-AAFLISIITQLLQTPPPKERYMGEPRALIIAPTR 94 Query 58 HLVTQ---HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP 114 LV Q + +T + G + AR D+L+ T L Sbjct 95 ELVVQIAKDAAALTKYTGLNV-MTFVGGMDFDKQLKQLEARFCDILVATPGRLLD----F 149 Query 115 EEEEHVELTVFSLIVVDECHH 135 + V L + ++V+DE Sbjct 150 NQRGEVHLDMVEVMVLDEADR 170 >sp|Q02S21|RHLB_PSEAB ATP-dependent RNA helicase RhlB OS=Pseudomonas aeruginosa (strain UCBPP-PA14) OX=208963 GN=rhlB PE=3 SV=1 Length=397 Score = 115 bits (288), Expect = 2e-26, Method: Composition-based stats. Identities = 65/378 (17%), Positives = 127/378 (34%), Gaps = 65/378 (17%) Query 162 QVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLC 221 QVLG T G + A + A L + QL + + P ++Y Sbjct 38 QVLGFT----LRGQDAIGRAQTGTGKTAAFLISIIT--------QLLQ-TPPPKERYMGE 84 Query 222 HR-RSQDPFGDLLKKLMDQIHDHLEMPELS--RKFGTQMYEQQVVKLSEA-AALAGLQEQ 277 R P +L+ ++ + L+ G +++Q+ +L + Sbjct 85 PRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPG 144 Query 278 RVYALHLRRYN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLL--AL 330 R+ + R + +++ + R +D + + R+ + +T + LL A Sbjct 145 RLLDFNQRGEVHLDMVEVMVLDEADRMLD-MGFIPQ--VRQIIRQTPHKGERQTLLFSAT 201 Query 331 FDDRKNELAHLATHGPENPKLE-------------------MLEKILQRQFSSSNSPRGI 371 F D LA T P ++E K+L + +N R + Sbjct 202 FTDDVMNLAKQWTVDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLVAQNNWERVM 261 Query 372 IFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGT 431 +F + + L + G + S + Q + ++ F++G Sbjct 262 VFANRKDEVRRIEERLTKD--------------GISAAQMSGDVPQHKRIRTLEGFREGK 307 Query 432 LNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSREL 490 + +LVAT VA G+ I + V+ + L + V GR RA S + Sbjct 308 IRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGTSISFAGEDDAF 367 Query 491 KRELINEALETLMEQAVA 508 +E L+ + + Sbjct 368 A----LPPIEELLGRKIT 381 Score = 52.9 bits (125), Expect = 5e-06, Method: Composition-based stats. Identities = 30/141 (21%), Positives = 52/141 (37%), Gaps = 18/141 (13%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAY--VAKRHLETVDGA-------KVVVLVNRV 57 Q +V+ L G++ I TG GKT AA + + L+T + +++ Sbjct 36 QAQVLGFTLRGQDAIGRAQTGTGKT-AAFLISIITQLLQTPPPKERYMGEPRALIIAPTR 94 Query 58 HLVTQ---HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP 114 LV Q + +T + G + AR D+L+ T L Sbjct 95 ELVVQIAKDAAALTKYTGLNV-MTFVGGMDFDKQLKQLEARFCDILVATPGRLLD----F 149 Query 115 EEEEHVELTVFSLIVVDECHH 135 + V L + ++V+DE Sbjct 150 NQRGEVHLDMVEVMVLDEADR 170 >sp|B7UUT0|RHLB_PSEA8 ATP-dependent RNA helicase RhlB OS=Pseudomonas aeruginosa (strain LESB58) OX=557722 GN=rhlB PE=3 SV=1 Length=397 Score = 115 bits (288), Expect = 2e-26, Method: Composition-based stats. Identities = 65/378 (17%), Positives = 127/378 (34%), Gaps = 65/378 (17%) Query 162 QVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLC 221 QVLG T G + A + A L + QL + + P ++Y Sbjct 38 QVLGFT----LRGQDAIGRAQTGTGKTAAFLISIIT--------QLLQ-TPPPKERYMGE 84 Query 222 HR-RSQDPFGDLLKKLMDQIHDHLEMPELS--RKFGTQMYEQQVVKLSEA-AALAGLQEQ 277 R P +L+ ++ + L+ G +++Q+ +L + Sbjct 85 PRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPG 144 Query 278 RVYALHLRRYN-----DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLL--AL 330 R+ + R + +++ + R +D + + R+ + +T + LL A Sbjct 145 RLLDFNQRGEVHLDMVEVMVLDEADRMLD-MGFIPQ--VRQIIRQTPHKGERQTLLFSAT 201 Query 331 FDDRKNELAHLATHGPENPKLE-------------------MLEKILQRQFSSSNSPRGI 371 F D LA T P ++E K+L + +N R + Sbjct 202 FTDDVMNLAKQWTVDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLVAQNNWERVM 261 Query 372 IFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGT 431 +F + + L + G + S + Q + ++ F++G Sbjct 262 VFANRKDEVRRIEERLTKD--------------GISAAQMSGDVPQHKRIRTLEGFREGK 307 Query 432 LNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSREL 490 + +LVAT VA G+ I + V+ + L + V GR RA S + Sbjct 308 IRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGTSISFAGEDDAF 367 Query 491 KRELINEALETLMEQAVA 508 +E L+ + + Sbjct 368 A----LPPIEELLGRKIT 381 Score = 52.9 bits (125), Expect = 5e-06, Method: Composition-based stats. Identities = 30/141 (21%), Positives = 52/141 (37%), Gaps = 18/141 (13%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAY--VAKRHLETVDGA-------KVVVLVNRV 57 Q +V+ L G++ I TG GKT AA + + L+T + +++ Sbjct 36 QAQVLGFTLRGQDAIGRAQTGTGKT-AAFLISIITQLLQTPPPKERYMGEPRALIIAPTR 94 Query 58 HLVTQ---HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP 114 LV Q + +T + G + AR D+L+ T L Sbjct 95 ELVVQIAKDAAALTKYTGLNV-MTFVGGMDFDKQLKQLEARFCDILVATPGRLLD----F 149 Query 115 EEEEHVELTVFSLIVVDECHH 135 + V L + ++V+DE Sbjct 150 NQRGEVHLDMVEVMVLDEADR 170 >sp|Q9DF36|DD21B_XENLA Nucleolar RNA helicase 2-B OS=Xenopus laevis OX=8355 GN=ddx21-b PE=2 SV=2 Length=800 Score = 118 bits (296), Expect = 2e-26, Method: Composition-based stats. Identities = 56/318 (18%), Positives = 104/318 (33%), Gaps = 54/318 (17%) Query 204 CPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVV 263 + QQP + P +L ++ +++ + +++ +G Y+QQV Sbjct 279 LVERLSEDQQPLARGRAPRVIILTPTRELAIQITNELRSMTKKLKVACFYGGTPYQQQVF 338 Query 264 KLSEAAALAGLQEQRVYALHLRRYND-----ALLIHDTVRAVDALAALQDFYHREHVTKT 318 + + R+ L D +++ + D + + Sbjct 339 AIKDGIDFLVGTPGRIRDLVQNYRLDLTALKHVVLDEVDMMFDV--GFSEQVEEILSVRY 396 Query 319 QILCAERRLLALF------------------------------DDRKNELAHLATHGPEN 348 + E LF + HLA + Sbjct 397 KPDPEENPQTLLFSATCPDWMYNVAKKYMRKQYEKVDLVGHRSQKAAITVEHLAIECNRS 456 Query 349 PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN 408 K +L I+Q S + + IIF ++ AH L L Sbjct 457 QKAAVLGDIVQVY--SGSHGKTIIFCDSKLQAHELST-------------NCGSL-KQSA 500 Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 + Q++++ V++ F+ GT +L+AT+VA GLDIP ++VV Y + V Sbjct 501 KPLHGDLQQKEREVVLKGFRQGTFEVLIATNVAARGLDIPEVDLVVLYSAPKEADAYVHR 560 Query 469 RGR-ARADQSVYAFVATE 485 GR RA ++ E Sbjct 561 SGRTGRAGRTGVCISLYE 578 Score = 43.6 bits (101), Expect = 0.006, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 50/133 (38%), Gaps = 12/133 (9%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDG------AKVVVLVNRVHL 59 Q + GK++++ TG GKT + + +R E +V++L L Sbjct 248 QSKTFHTVYSGKDVVVQARTGTGKTFSFGIPLVERLSEDQQPLARGRAPRVIILTPTREL 307 Query 60 VTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 Q E R M + V G + + D L+ T ++ + + Sbjct 308 AIQITNELRSMTK-KLKVACFYGGTPYQQQVFAIKDGIDFLVGTPGRIRDLVQNYR---- 362 Query 120 VELTVFSLIVVDE 132 ++LT +V+DE Sbjct 363 LDLTALKHVVLDE 375 >sp|Q1DMX8|PRP28_COCIM Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Coccidioides immitis (strain RS) OX=246410 GN=PRP28 PE=3 SV=2 Length=820 Score = 118 bits (296), Expect = 2e-26, Method: Composition-based stats. Identities = 42/239 (18%), Positives = 93/239 (39%), Gaps = 32/239 (13%) Query 294 HDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNEL-------------AH 340 + RA+ +D Y + + + A R+ + R + Sbjct 572 AEDARAMSQHLGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGNIGEAVDTVEQR 631 Query 341 LATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRA 400 + E+ + + L IL S P I+F +++ ++ ++Q Sbjct 632 VEFISGEDKRKKRLADILA---SGEFRPPIIVFVNIKRNCDAVARDIKQ----------- 677 Query 401 QLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT 460 +G + + TQ ++ + ++G ++LVAT +A G+D+P ++VV + + T Sbjct 678 ---MGYSSVTLHGSKTQEQREAALASVRNGNTDVLVATDLAGRGIDVPDVSLVVNFNMAT 734 Query 461 NEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQAE 517 N S GR RA +S A ++ +L +++ + + ++K + A+ Sbjct 735 NIESYTHRIGRTGRAGKSGVAITFLGNEDADVMYDLKQMLMKSSISRVPEELRKHEAAQ 793 Score = 61.4 bits (147), Expect = 2e-08, Method: Composition-based stats. Identities = 29/141 (21%), Positives = 50/141 (35%), Gaps = 16/141 (11%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT---------RAAAYVAKRHLETV--DGAKVVVLVN 55 Q I AL+ +++I TG+GKT A E DG ++L Sbjct 407 QRAAIPIALQNRDLIGVAVTGSGKTAAFLLPLLVYIAELPRLDEFEWRKSDGPYAIILAP 466 Query 56 RVHLVTQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP 114 L Q E R+ + + V ++ G L +++I T L + Sbjct 467 TRELAQQIENEARKFCNPLGFNVVSIVGGHSLEEQSFSLRNGAEIIIATPGRLVDCI--- 523 Query 115 EEEEHVELTVFSLIVVDECHH 135 E + L+ +++DE Sbjct 524 -ERRILVLSQCCYVIMDEADR 543 >sp|Q9Y6V7|DDX49_HUMAN Probable ATP-dependent RNA helicase DDX49 OS=Homo sapiens OX=9606 GN=DDX49 PE=1 SV=1 Length=483 Score = 116 bits (291), Expect = 2e-26, Method: Composition-based stats. Identities = 46/209 (22%), Positives = 80/209 (38%), Gaps = 16/209 (8%) Query 346 PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 PE K L ++QR IIFT T ++ L + L++ Sbjct 227 PEKVKDAYLVHLIQRFQDEHEDWSIIIFTNTCKTCQILCMMLRKFSFPTV---------- 276 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465 + + M Q+++ + KF+ +L+AT VA GLDIP VV+ + Sbjct 277 ----ALHSMMKQKERFAALAKFKSSIYRILIATDVASRGLDIPTVQVVINHNTPGLPKIY 332 Query 466 VQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIR 523 + GR ARA + A + T+ L + + + L E +V + + +R Sbjct 333 IHRVGRTARAGRQGQAITLVTQYDIHLVHAIEEQIKKKLEEFSVEEAEVLQILTQVNVVR 392 Query 524 DLQQAALTKRAAQAAQRENQRQQFPVEHV 552 + L + N+R+Q +E Sbjct 393 RECEIKLEAAHFDEKKEINKRKQLILEGK 421 Score = 56.3 bits (134), Expect = 5e-07, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 47/131 (36%), Gaps = 5/131 (4%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE 65 Q I LEG++ + TG+GKT A + L +VL L Q E Sbjct 29 QLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSEDPYGIFCLVLTPTRELAYQIAE 88 Query 66 EFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 +FR + + G M A L+R ++I T L L S + Sbjct 89 QFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIATPGRLADHLRSSNT---FSIKK 145 Query 125 FSLIVVDECHH 135 +V+DE Sbjct 146 IRFLVMDEADR 156 >sp|P21693|DBPA_ECOLI ATP-dependent RNA helicase DbpA OS=Escherichia coli (strain K12) OX=83333 GN=dbpA PE=1 SV=2 Length=457 Score = 116 bits (290), Expect = 2e-26, Method: Composition-based stats. Identities = 56/303 (18%), Positives = 106/303 (35%), Gaps = 47/303 (16%) Query 225 SQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHL 284 D + + ++ L ++ G Q + Q L A + R+ HL Sbjct 79 PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLD-HL 137 Query 285 RRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNE-LAHLAT 343 ++ +L +T+ D + D + + R LF E +A ++ Sbjct 138 QKGTVSLDALNTLVM-DEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISG 196 Query 344 HGPENP-------------------------KLEMLEKILQRQFSSSNSPRGIIFTRTRQ 378 +P K+ +L+++L ++F T++ Sbjct 197 RVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLH----QPSSCVVFCNTKK 252 Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT 438 ++ L + +G S + QRD+ + + +F +G+ +LVAT Sbjct 253 DCQAVCDALNE--------------VGQSALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298 Query 439 SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE 497 VA GLDI +VV + L + V GR ARA S A + +I++ Sbjct 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358 Query 498 ALE 500 L+ Sbjct 359 MLQ 361 Score = 54.0 bits (128), Expect = 3e-06, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 53/134 (40%), Gaps = 11/134 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAY---VAKRHLETVDGAKVVVLVNRVHLVTQH 63 Q + L GK++ + TG+GKT AA+ + ++ ++ + +VL L Q Sbjct 30 QAAALPAILAGKDVRVQAKTGSGKT--AAFGLGLLQQIDASLFQTQALVLCPTRELADQV 87 Query 64 GEEFRRMLD--GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVE 121 E RR+ + TL G L +++ T L L ++ V Sbjct 88 AGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHL----QKGTVS 143 Query 122 LTVFSLIVVDECHH 135 L + +V+DE Sbjct 144 LDALNTLVMDEADR 157 >sp|Q81DF9|CSHE_BACCR DEAD-box ATP-dependent RNA helicase CshE OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711) OX=226900 GN=cshE PE=2 SV=1 Length=458 Score = 116 bits (290), Expect = 2e-26, Method: Composition-based stats. Identities = 49/361 (14%), Positives = 120/361 (33%), Gaps = 20/361 (6%) Query 182 INHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIH 241 + + C+++ + + Q+ ++ Q + + G + + + ++ Sbjct 64 LEKIDPECSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAI-YGGQDVAQQLRKLK 122 Query 242 DHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVD 301 + + + ++ + LS + + + ++ + +L Sbjct 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182 Query 302 ALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQ 361 L + + + K + + + + + + + K + L ++ R Sbjct 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDR- 241 Query 362 FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ 421 +IF RT+ A L L+ +G + + Q ++ Sbjct 242 ---DQPFLAVIFCRTKVRASKLYDNLKG--------------LGYNCAELHGDIPQAKRE 284 Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYA 480 V++ F++ + L+AT VA GLD+ V Y + + S + GR RA S A Sbjct 285 RVMKSFREAKIQYLIATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLA 344 Query 481 FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR 540 E E I + L +++ + K+ + + K + + Q R Sbjct 345 ITFVAAKDEKHLEEIEKTLGAPIQREIIEQPKIKRVDENGKPVPKPAPKKSGQNRQRDSR 404 Query 541 E 541 E Sbjct 405 E 405 Score = 56.3 bits (134), Expect = 6e-07, Method: Composition-based stats. Identities = 31/130 (24%), Positives = 50/130 (38%), Gaps = 7/130 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLE-TVDGAKVVVLVNRVHLVTQHGE 65 Q + I L GK+II TG GKT A ++ + +++ L Q Sbjct 32 QEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPECSDVQALIVAPTRELALQITT 91 Query 66 EFRRMLDGR--WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELT 123 E ++ML R V + G L +++ T L + E ++L+ Sbjct 92 EIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNTHIVVATPGRLLDHI----RRETIDLS 147 Query 124 VFSLIVVDEC 133 S IV+DE Sbjct 148 NLSTIVLDEA 157 >sp|Q9VIF6|DDX47_DROME ATP-dependent RNA helicase DDX47 OS=Drosophila melanogaster OX=7227 GN=pths PE=1 SV=1 Length=507 Score = 116 bits (291), Expect = 3e-26, Method: Composition-based stats. Identities = 47/215 (22%), Positives = 83/215 (39%), Gaps = 26/215 (12%) Query 335 KNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQ 394 +L P K L IL +S +IF T + L L+ Sbjct 272 VEQLQQSYLFIPVKYKDVYLVHILNELAGNSF----MIFCSTCNNTVKTALMLRA----- 322 Query 395 TVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV 454 +G M+Q + + KF+ ++L++T VA GLDIPH +VVV Sbjct 323 ---------LGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVV 373 Query 455 RYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQK 512 + + T+ + GR ARA +S A + ++ EL + +E L+ + + + K Sbjct 374 NFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIEL-----YQRIEHLLGKQL-TLYK 427 Query 513 MDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQF 547 ++ E A + +A T + + + Sbjct 428 CEEDEVMALQERVAEAQRTAKLELKDLEDTRGGHK 462 Score = 63.3 bits (152), Expect = 4e-09, Method: Composition-based stats. Identities = 37/131 (28%), Positives = 53/131 (40%), Gaps = 5/131 (4%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT-RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q E I AL+GK++I TG+GKT A + LE +VL L Q GE Sbjct 88 QREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENPQRYFALVLTPTRELAFQIGE 147 Query 66 EFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 +F + G + G M A LA+ ++I T L L + + L Sbjct 148 QFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLVDHLENMKG---FNLKA 204 Query 125 FSLIVVDECHH 135 +V+DE Sbjct 205 IKYLVMDEADR 215 >sp|Q6BLU9|PRP28_DEBHA Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=PRP28 PE=3 SV=2 Length=580 Score = 117 bits (292), Expect = 3e-26, Method: Composition-based stats. Identities = 36/170 (21%), Positives = 66/170 (39%), Gaps = 17/170 (10%) Query 327 LLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLW 386 + F+ + P KL+ L IL+ + + IIF +++ L Sbjct 398 INQQFEYFGARQSSDEILDP--KKLDKLFSILRFHKDENRNYSIIIFANFKKACEELAYE 455 Query 387 LQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLD 446 L ++ + N+ +Q ++ I F++G +L+AT VA G+D Sbjct 456 LSRKGF-------------SDNTVIHGSKSQEARERAIDSFREGKDKILIATDVAARGID 502 Query 447 IPHCNVVVRYGLLTNEISMVQARGR-ARADQSVY-AFVATEGSRELKREL 494 IP+ ++VV Y + + GR RA +G E+ +L Sbjct 503 IPNVSLVVNYQMTKKFDEYIHRIGRTGRAGNKGTSCTFIDDGDSEVFLDL 552 Score = 45.6 bits (106), Expect = 0.001, Method: Composition-based stats. Identities = 60/359 (17%), Positives = 112/359 (31%), Gaps = 48/359 (13%) Query 14 ALEGKNIIIWLPTGAGKTRAAAY--------------VAKRHLE--TVDGAKVVVLVNRV 57 AL G++I+ TG+GKT A + H + + ++L Sbjct 189 ALNGRDIVGIAETGSGKTL-AFLLPLFSYILSVDSNYLLYEHQQESNFNKPLGLILAPTR 247 Query 58 HLVTQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE 116 L Q +E + D V T+ G + +++ T L +L E Sbjct 248 ELALQITKEAKLFGDKLNLNVVTIIGGHQYEETVHSVRNGVHIVVATPGRLIDSL----E 303 Query 117 EEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGAS 176 + L+ +DE +I + + LP AS + Sbjct 304 RGIINLSNCYFFTMDEADK--------MIDMGFEKSLQSILNYLP------AS--EKLET 347 Query 177 KLDGAINHVLQLCANLDTWCIMSP--QNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDL-L 233 +DG I ++ + + T I P + L + F Sbjct 348 TIDGKIFNIKKRITLMFTATISPPIEKITKNYLMKPGYLFIGNVGEAVDNINQQFEYFGA 407 Query 234 KKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLI 293 ++ D+I D ++ +L E + + A E+ Y L + ++D +I Sbjct 408 RQSSDEILDPKKLDKLFSILRFHKDENRNYSIIIFANFKKACEELAYELSRKGFSDNTVI 467 Query 294 HDT------VRAVDALAALQD-FYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG 345 H + RA+D+ +D V I L+ + K ++ G Sbjct 468 HGSKSQEARERAIDSFREGKDKILIATDVAARGIDIPNVSLVVNYQMTKKFDEYIHRIG 526 >sp|O02494|IF4A_CRYPV Eukaryotic initiation factor 4A OS=Cryptosporidium parvum OX=5807 GN=EIF4-A PE=2 SV=1 Length=405 Score = 114 bits (286), Expect = 4e-26, Method: Composition-based stats. Identities = 47/337 (14%), Positives = 119/337 (35%), Gaps = 23/337 (7%) Query 172 TGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFG- 230 +G I + ++ +L+ ++ Q+ + + C R G Sbjct 77 SGTGKTATFVIAALQKIDYSLNACQVLLLAPTRELAQQIQKVALALGDYCELRCHACVGG 136 Query 231 DLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDA 290 ++ M+++ + M + M ++ +++ + + + + Sbjct 137 TSVRDDMNKLKSGVHMVVGTPGRVFDMLDKGYLRVDNLKLFILDEADEMLSRGFKVQIHD 196 Query 291 LLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPK 350 + AL + H+T + +R L+ + + G E K Sbjct 197 IFKKLPQDVQVALFSATMPNEILHLTTQFMRDPKRILVKQEELTLEGIRQFYV-GVE--K 253 Query 351 LEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSS 410 E L + + + II+ TR+ L ++++ D + G Sbjct 254 DEWKMDTLIDLYETLTIVQAIIYCNTRRRVDQLTKQMRER------DFTCSSMHG----- 302 Query 411 QSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARG 470 M Q+D++ ++++F+ G+ +L+ T + G+D+ ++V+ Y L + + + G Sbjct 303 ---DMDQKDREVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPVSPETYIHRIG 359 Query 471 R-ARADQSVYAF-VATEGSRELKRELI---NEALETL 502 R R + + T+ R++ N +E + Sbjct 360 RSGRFGKKGVSINFVTDDDIVCLRDIERHYNTQIEEM 396 Score = 56.0 bits (133), Expect = 7e-07, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 49/131 (37%), Gaps = 10/131 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT---RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQH 63 Q I P L+G + I +G GKT AA ++ +++ +V++L L Q Sbjct 58 QQRGIKPILDGYDTIGQAQSGTGKTATFVIAAL--QKIDYSLNACQVLLLAPTRELAQQI 115 Query 64 GEEFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 + + D G R L +++ T + L ++ ++ + Sbjct 116 QKVALALGDYCELRCHACVGGTSVRDDMNKLKSGVHMVVGTPGRVFDML----DKGYLRV 171 Query 123 TVFSLIVVDEC 133 L ++DE Sbjct 172 DNLKLFILDEA 182 >sp|Q4PEX7|DBP8_USTMA ATP-dependent RNA helicase DBP8 OS=Ustilago maydis (strain 521 / FGSC 9021) OX=237631 GN=DBP8 PE=3 SV=2 Length=531 Score = 116 bits (290), Expect = 4e-26, Method: Composition-based stats. Identities = 44/203 (22%), Positives = 81/203 (40%), Gaps = 16/203 (8%) Query 368 PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF 427 P IIFT ++A +L L + +G N S +H+ Q ++ E +Q F Sbjct 341 PATIIFTARCKTAATLSGMLAE--------------LGIPNVSLHSHLRQSERSENLQTF 386 Query 428 QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATE 485 + + +L+AT V GLDIP +V+ + L + V GR AR + +A TE Sbjct 387 RAQRVPVLIATDVGSRGLDIPDVELVINWDLPSAWQDYVHRVGRTARNGKRGFAISFITE 446 Query 486 GSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQ 545 ++ + ++ L + + + A + A + +Q +R+ + Q Sbjct 447 RDIDVIHSIEDKINTKLTQLEGLEDEDKILEKLNAVATAKRVATMALHDSQFGERQQRNQ 506 Query 546 QFPVEHVQLLCINCMVAVGHGSD 568 + ++ A G D Sbjct 507 HKQLARLKAEKRASKKAKSAGHD 529 Score = 53.6 bits (127), Expect = 5e-06, Method: Composition-based stats. Identities = 57/239 (24%), Positives = 92/239 (38%), Gaps = 20/239 (8%) Query 26 TGAGKTRAAAYVAKRHL-ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRW---TVTTLS 81 TG+GKT A L + + G VVL L Q E+F + +G + Sbjct 84 TGSGKTLCFALPILNKLIKDMVGGFAVVLTPTRELGVQLHEQFVAVGEGARMGLRCALVL 143 Query 82 G--DMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHTHKD 139 G DM +A R H +++ T L L S EE L +V+DE D Sbjct 144 GGMDMMKQASELANLRPH-VIVATPGRLVDHLRSGGGEEW-GLRRCKFLVLDEADRLLTD 201 Query 140 TVYNVIMSQYLELKLQRAQPLPQVLGLTAS-----PGTGGASKLDGAIN-HVLQLCANLD 193 T + +YL L A+ L Q L TA+ A + +G V ++ +D Sbjct 202 TFKPEL--EYLYSVLPSAKTL-QTLLFTATLTEQVVEFANAKRPEGKPAPMVCKIE--MD 256 Query 194 TWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRK 252 T + + + H ++P + L H P + ++KL + E E +++ Sbjct 257 TKTPETLEQRYVFVPSHVREPYLYHILRHP-PIKPSSERVRKLNAKHQADRERKEENQR 314 >sp|A5DKW3|DRS1_PICGU ATP-dependent RNA helicase DRS1 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DRS1 PE=3 SV=2 Length=705 Score = 117 bits (293), Expect = 5e-26, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 90/233 (39%), Gaps = 19/233 (8%) Query 339 AHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI 398 + E+ K +L +L R R ++F ++ AH L + L Sbjct 420 EFVRIRKREHLKPALLYHLL-RLVDPQQQNRIVVFVSRKEMAHRLRIVLG---------- 468 Query 399 RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL 458 L+G S +TQ + + ++ F+ + +L+ T +A GLDIP +V+ + + Sbjct 469 ----LLGMKVSELHGSLTQEQRLQSVKDFRSLAVPVLICTDLAARGLDIPKIEIVINFDM 524 Query 459 LTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAE 517 + GR ARA + + G R ++ +A+++L EQ + + + Sbjct 525 PKTHEIYLHRVGRTARAGREGRSITFV-GESNQDRSIVKDAIKSLEEQK--NGKAVSRTV 581 Query 518 YQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQLLCINCMVAVGHGSDLR 570 K+ +L +K+ E ++ + ++ + H ++ Sbjct 582 DWKKVEELNSIVESKKDTIDEVLEEEKSAKEILQAEMQLEKASNIMKHEKEIH 634 Score = 53.3 bits (126), Expect = 7e-06, Method: Composition-based stats. Identities = 28/135 (21%), Positives = 49/135 (36%), Gaps = 9/135 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA----KVVVLVNRVHLVTQ 62 Q I A+ GK+I+ TG+GKT A L A +V+VL L Q Sbjct 225 QAASIPIAMMGKDIVAGAVTGSGKTAAYLIPIIERLIYKPAAVSATRVIVLTPTRELAIQ 284 Query 63 HGEEFRRMLDGRWTV--TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 + +++ + G + R L D+++ T L + + Sbjct 285 VCDVGKKLGQFVANLNFGLAVGGLNLRQQEQQLKSRPDIVVATPGRLIDHIRNSPS---F 341 Query 121 ELTVFSLIVVDECHH 135 + ++V+DE Sbjct 342 SIENLEVLVMDEADR 356 >sp|Q5HME0|CSHA_STAEQ DEAD-box ATP-dependent RNA helicase CshA OS=Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A) OX=176279 GN=cshA PE=3 SV=1 Length=509 Score = 116 bits (289), Expect = 5e-26, Method: Composition-based stats. Identities = 64/352 (18%), Positives = 110/352 (31%), Gaps = 47/352 (13%) Query 248 ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYA----LHLRRYNDALLIHDTVRAVDAL 303 ++ FG E+Q+ L + RV L+ LI D + + Sbjct 99 QVVTVFGGMPIERQIKALKRGPQIVVGTPGRVIDHLNRRTLKTQGIHTLILDEADEMMNM 158 Query 304 AALQDFYHREHVTKTQILCAERRLLALFD----DRKNELAHLATHGPENPK--------- 350 + D + AE+R LF EL P+ K Sbjct 159 GFIDDMRFIMD-----KIPAEQRQTMLFSATMPKAIQELVQQFMKAPKIIKTMNNEMSDP 213 Query 351 --------LEMLEKI--LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRA 400 ++ LEK I+F RT++ L L + Sbjct 214 QIDEYYTIVKELEKFDTFTNFLDVHQPELAIVFGRTKRRVDELTSALLSK---------- 263 Query 401 QLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT 460 G +TQ + EV++KF++ +++LVAT VA GLDI + V + + Sbjct 264 ----GYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDISGVSHVYNFDIPQ 319 Query 461 NEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQ 519 + S GR RA + A I + M+ +K + Sbjct 320 DTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDVNNRRMKALRPPHRKEVLKARE 379 Query 520 AKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQLLCINCMVAVGHGSDLRK 571 I+D Q +++ QR + + +L+ V ++ Sbjct 380 DDIKDRVQNWMSRENEPRLQRISSELLKEYDSTELVASLLQELVEANDEVEV 431 Score = 52.9 bits (125), Expect = 8e-06, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 49/128 (38%), Gaps = 5/128 (4%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEE 66 Q + I ALEG +I+ TG GKT A + G + ++L L Q E+ Sbjct 29 QKDSIPYALEGDDILGQAQTGTGKTGAFGIPLIEKVVGQQGVQSLILAPTRELAMQVAEQ 88 Query 67 FRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF 125 R G + V T+ G M L R +++ T + L ++ Sbjct 89 LREFSKGQKVQVVTVFGGMPIERQIKALKRGPQIVVGTPGRVIDHLNRRT----LKTQGI 144 Query 126 SLIVVDEC 133 +++DE Sbjct 145 HTLILDEA 152 >sp|Q5RC67|DDX23_PONAB Probable ATP-dependent RNA helicase DDX23 OS=Pongo abelii OX=9601 GN=DDX23 PE=2 SV=1 Length=820 Score = 117 bits (294), Expect = 5e-26, Method: Composition-based stats. Identities = 40/175 (23%), Positives = 70/175 (40%), Gaps = 20/175 (11%) Query 347 ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA 406 E+ K + L IL++ F P IIF ++ L L++ +G Sbjct 648 ESEKRKKLLAILEQGF----DPPIIIFVNQKKGCDVLAKSLEK--------------MGY 689 Query 407 GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV 466 + Q ++ + + G ++LVAT VA G+DI ++VV Y + N + Sbjct 690 NACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYI 749 Query 467 QARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQ 519 GR RA +S A T+ + EL LE+ + + A+++ Sbjct 750 HRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAILESPVSSCPPELANHPDAQHK 804 Score = 51.0 bits (120), Expect = 3e-05, Method: Composition-based stats. Identities = 29/140 (21%), Positives = 49/140 (35%), Gaps = 15/140 (11%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT---RAAAYV-------AKRHLETVDGAKVVVLVNR 56 Q + I L+ ++II TG+GKT V R E+ G ++L Sbjct 418 QRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAIILAPT 477 Query 57 VHLVTQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE 115 L Q EE + + G + L +++I T L L Sbjct 478 RELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVL---- 533 Query 116 EEEHVELTVFSLIVVDECHH 135 E ++ + + +V+DE Sbjct 534 ENRYLVPSRCTYVVLDEADR 553 >sp|Q9BUQ8|DDX23_HUMAN Probable ATP-dependent RNA helicase DDX23 OS=Homo sapiens OX=9606 GN=DDX23 PE=1 SV=3 Length=820 Score = 117 bits (293), Expect = 5e-26, Method: Composition-based stats. Identities = 40/175 (23%), Positives = 70/175 (40%), Gaps = 20/175 (11%) Query 347 ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA 406 E+ K + L IL++ F P IIF ++ L L++ +G Sbjct 648 ESEKRKKLLAILEQGF----DPPIIIFVNQKKGCDVLAKSLEK--------------MGY 689 Query 407 GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV 466 + Q ++ + + G ++LVAT VA G+DI ++VV Y + N + Sbjct 690 NACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYI 749 Query 467 QARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQ 519 GR RA +S A T+ + EL LE+ + + A+++ Sbjct 750 HRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAILESPVSSCPPELANHPDAQHK 804 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 30/140 (21%), Positives = 50/140 (36%), Gaps = 15/140 (11%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT---RAAAYV-------AKRHLETVDGAKVVVLVNR 56 Q + I L+ ++II TG+GKT V R E+ G ++L Sbjct 418 QRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAIILAPT 477 Query 57 VHLVTQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE 115 L Q EE + + G + L +++I T L L Sbjct 478 RELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVL---- 533 Query 116 EEEHVELTVFSLIVVDECHH 135 E ++ L+ + +V+DE Sbjct 534 ENRYLVLSRCTYVVLDEADR 553 >sp|Q96GQ7|DDX27_HUMAN Probable ATP-dependent RNA helicase DDX27 OS=Homo sapiens OX=9606 GN=DDX27 PE=1 SV=2 Length=796 Score = 117 bits (293), Expect = 5e-26, Method: Composition-based stats. Identities = 57/303 (19%), Positives = 120/303 (40%), Gaps = 52/303 (17%) Query 289 DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFD----DRKNELAHLATH 344 + L++ + R +D Y E + + +C+ R LF D +LA ++ Sbjct 366 EVLILDEADRMLDE-------YFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLK 418 Query 345 GPENPKLE-------MLEKILQRQFSSSNSPR---------------GIIFTRTRQSAHS 382 P + L + R + R ++FT+T++ AH Sbjct 419 NPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHR 478 Query 383 LLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAE 442 + + L L+G +++Q + E +++F+D +++LVAT VA Sbjct 479 MHILLG--------------LMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAA 524 Query 443 EGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALE 500 GLDI V+ + + V GR ARA ++ + + E R++ +E++ A Sbjct 525 RGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEIVKAAKA 584 Query 501 TLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQLLCINCM 560 + + + + +++ KI +++ +A ++E Q+ + + + L Sbjct 585 PVKARILPQDVIL---KFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGK 641 Query 561 VAV 563 AV Sbjct 642 EAV 644 Score = 57.9 bits (138), Expect = 3e-07, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 48/127 (38%), Gaps = 8/127 (6%) Query 14 ALEGKNIIIWLPTGAGKTRAAAYVAKRHL----ETVDGAKVVVLVNRVHLVTQHGEEFRR 69 L GK+I TG GKT A A L +V+VLV L Q R+ Sbjct 252 GLLGKDICACAATGTGKTAAFALPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQ 311 Query 70 MLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLI 128 + T L+ G + ++ L D+LI T L L + L+ ++ Sbjct 312 LAQFCNITTCLAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPS---FHLSSIEVL 368 Query 129 VVDECHH 135 ++DE Sbjct 369 ILDEADR 375 >sp|P93008|RH21_ARATH DEAD-box ATP-dependent RNA helicase 21 OS=Arabidopsis thaliana OX=3702 GN=RH21 PE=2 SV=1 Length=733 Score = 117 bits (293), Expect = 5e-26, Method: Composition-based stats. Identities = 50/326 (15%), Positives = 108/326 (33%), Gaps = 64/326 (20%) Query 222 HRRSQDPFGDLLKKLMDQIHDHLEMP--ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRV 279 + P +L +++ ++ ++ G Q E+Q +K+++ + R+ Sbjct 391 YAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEEQGLKITQGCEIVIATPGRL 450 Query 280 YALHLRRYN-----DALLIHDTVRAVD-------------------------ALAALQDF 309 RRY + +++ + R +D + Sbjct 451 IDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVAGVLDAMPSSNLKPENEEEELDEKKI 510 Query 310 YHREHVTKTQILCAERRLLALFDDRK------------NELAHLATHGPENPKLEMLEKI 357 Y ++ + RL + + ++ E+ K L+K+ Sbjct 511 YRTTYMFSATMPPGVERLARKYLRNPVVVTIGTAGKTTDLISQHVIMMKESEKFFRLQKL 570 Query 358 LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ 417 L I+F T+++ S+ L + G ++ +Q Sbjct 571 LDEL----GEKTAIVFVNTKKNCDSIAKNLDKA--------------GYRVTTLHGGKSQ 612 Query 418 RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQ 476 ++ ++ F+ N+LVAT V G+DIP V+ Y + + GR RA + Sbjct 613 EQREISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAGK 672 Query 477 SVYAF-VATEGSRELKRELINEALET 501 S A T E+ +L +++ Sbjct 673 SGVATSFLTLHDTEVFYDLKQMLVQS 698 Score = 57.9 bits (138), Expect = 3e-07, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 50/139 (36%), Gaps = 14/139 (10%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA---------KVVVLVNRV 57 Q I L+ +++I TG+GKT A ++ + VV+ Sbjct 340 QMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTR 399 Query 58 HLVTQHGEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE 116 L Q EE + + VT++ G + + +++I T L L E Sbjct 400 ELAQQIEEETVKFAHYLGFRVTSIVGGQSIEEQGLKITQGCEIVIATPGRLIDCL----E 455 Query 117 EEHVELTVFSLIVVDECHH 135 + L + +V+DE Sbjct 456 RRYAVLNQCNYVVLDEADR 474 >sp|P0CQ88|PRP28_CRYNJ Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=PRP28 PE=3 SV=1 Length=738 Score = 117 bits (292), Expect = 7e-26, Method: Composition-based stats. Identities = 40/187 (21%), Positives = 82/187 (44%), Gaps = 21/187 (11%) Query 343 THGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL 402 HG E K L +IL+ P I+F +++A ++ ++QQ Sbjct 564 VHGDEKKK-ARLIEILRTI---GLPPPIIVFVNQKKTADMVVKYVQQA------------ 607 Query 403 LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE 462 G + + +Q ++ +Q +DG +++LVAT +A G+D+P ++V+ + + Sbjct 608 --GMSGVTLHSGKSQEQREAALQALRDGEISVLVATDLAGRGIDVPDVSLVINWQMSDTI 665 Query 463 ISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA 520 V GR RA ++ A T E+ +L E ++ M + + + +A Sbjct 666 EKYVHRIGRTGRAGKTGVAITFLTNDDDEVMYDLRIEVEKSKMSKMNPELAR-HEAARTR 724 Query 521 KIRDLQQ 527 R++++ Sbjct 725 VTREMKR 731 Score = 49.8 bits (117), Expect = 7e-05, Method: Composition-based stats. Identities = 24/139 (17%), Positives = 52/139 (37%), Gaps = 14/139 (10%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVD---------GAKVVVLVNRV 57 Q + I ++ +++I TG+GKT A ++ + G +++ Sbjct 342 QRQAIPIGMQNRDLIGVAKTGSGKTAAFVIPMLDYIGHLPPLNDDNRHLGPYALIMAPTR 401 Query 58 HLVTQHGEEFRRM-LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE 116 L Q E RR L + ++ G L +++I T L+ + + Sbjct 402 ELAQQIETETRRFALPLGYKCVSIVGGRSVEEQQFALRDGAEIIIATPGRLKDMV----D 457 Query 117 EEHVELTVFSLIVVDECHH 135 + + ++ +V+DE Sbjct 458 KSILVMSQCRYVVMDEADR 476 >sp|P0CQ89|PRP28_CRYNB Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=PRP28 PE=3 SV=1 Length=738 Score = 117 bits (292), Expect = 7e-26, Method: Composition-based stats. Identities = 40/187 (21%), Positives = 82/187 (44%), Gaps = 21/187 (11%) Query 343 THGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL 402 HG E K L +IL+ P I+F +++A ++ ++QQ Sbjct 564 VHGDEKKK-ARLIEILRTI---GLPPPIIVFVNQKKTADMVVKYVQQA------------ 607 Query 403 LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE 462 G + + +Q ++ +Q +DG +++LVAT +A G+D+P ++V+ + + Sbjct 608 --GMSGVTLHSGKSQEQREAALQALRDGEISVLVATDLAGRGIDVPDVSLVINWQMSDTI 665 Query 463 ISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA 520 V GR RA ++ A T E+ +L E ++ M + + + +A Sbjct 666 EKYVHRIGRTGRAGKTGVAITFLTNDDDEVMYDLRIEVEKSKMSKMNPELAR-HEAARTR 724 Query 521 KIRDLQQ 527 R++++ Sbjct 725 VTREMKR 731 Score = 49.8 bits (117), Expect = 7e-05, Method: Composition-based stats. Identities = 24/139 (17%), Positives = 52/139 (37%), Gaps = 14/139 (10%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVD---------GAKVVVLVNRV 57 Q + I ++ +++I TG+GKT A ++ + G +++ Sbjct 342 QRQAIPIGMQNRDLIGVAKTGSGKTAAFVIPMLDYIGHLPPLNDDNRHLGPYALIMAPTR 401 Query 58 HLVTQHGEEFRRM-LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE 116 L Q E RR L + ++ G L +++I T L+ + + Sbjct 402 ELAQQIETETRRFALPLGYKCVSIVGGRSVEEQQFALRDGAEIIIATPGRLKDMV----D 457 Query 117 EEHVELTVFSLIVVDECHH 135 + + ++ +V+DE Sbjct 458 KSILVMSQCRYVVMDEADR 476 >sp|P27639|IF4A_CAEEL Eukaryotic initiation factor 4A OS=Caenorhabditis elegans OX=6239 GN=inf-1 PE=2 SV=1 Length=402 Score = 114 bits (284), Expect = 7e-26, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 66/166 (40%), Gaps = 15/166 (9%) Query 349 PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN 408 K E L ++ N + +IF TR+ +L + + Q Sbjct 250 QKDEWKFDCLCDLYNVVNVTQAVIFCNTRRKVDTLTEKMTENQ--------------FTV 295 Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 S M Q ++ ++++F+ G+ +L+ T + G+D+ ++V+ Y L +N + + Sbjct 296 SCLHGDMDQAERDTIMREFRSGSSRVLITTDILARGIDVQQVSLVINYDLPSNRENYIHR 355 Query 469 RGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM 513 GR R + A + + + I T +E+ ++ + Sbjct 356 IGRSGRFGRKGVAINFVTENDARQLKEIESYYTTQIEEMPESIADL 401 Score = 51.0 bits (120), Expect = 2e-05, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 46/130 (35%), Gaps = 8/130 (6%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q I+P GK++I +G GKT + + +R + +V+ L Q + Sbjct 56 QKRAIVPCTTGKDVIAQAQSGTGKTATFSVSILQRIDHEDPHVQALVMAPTREL-AQQIQ 114 Query 66 EFRRMLDGRWTVTTLS--GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELT 123 + L V L G R L +++ T + + ++ + Sbjct 115 KVMSALGEYLNVNILPCIGGTSVRDDQRKLEAGIHVVVGTPGRVGDMINRNA----LDTS 170 Query 124 VFSLIVVDEC 133 + V+DE Sbjct 171 RIKMFVLDEA 180 >sp|Q4WEB4|FAL1_ASPFU ATP-dependent RNA helicase fal1 OS=Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293) OX=330879 GN=fal1 PE=3 SV=2 Length=398 Score = 114 bits (284), Expect = 7e-26, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 59/147 (40%), Gaps = 16/147 (11%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K E L + + + +IF TR+ L +++ S Sbjct 246 KEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREAN--------------FTVS 291 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 S M Q+++ ++Q F+ G +L++T V G+D+ ++V+ Y L TN + + Sbjct 292 SMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHRI 351 Query 470 GR-ARADQSVYAF-VATEGSRELKREL 494 GR R + A T + R++ Sbjct 352 GRSGRFGRKGVAINFVTSDDVRILRDI 378 Score = 44.4 bits (103), Expect = 0.003, Method: Composition-based stats. Identities = 20/120 (17%), Positives = 38/120 (32%), Gaps = 6/120 (5%) Query 16 EGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGR 74 +G++ I +G GKT + + + V + +VL L TQ + D Sbjct 60 KGRDTIAQAQSGTGKTATFSIGILQVIDTVVRETQALVLSPTRELATQIQSVIMALGDYM 119 Query 75 WTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC 133 G L ++ T + + H+ ++V+DE Sbjct 120 NVQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRVADMI----RRRHLRTRHIKMLVLDEA 175 >sp|Q54KG1|DDX41_DICDI Probable ATP-dependent RNA helicase ddx41 OS=Dictyostelium discoideum OX=44689 GN=ddx41 PE=1 SV=1 Length=671 Score = 116 bits (291), Expect = 8e-26, Method: Composition-based stats. Identities = 47/232 (20%), Positives = 85/232 (37%), Gaps = 23/232 (10%) Query 296 TVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLE 355 R +A +E +L E + N + PE K+ L Sbjct 409 NQRQTLLFSATMPKKIQEFARSALVLPVEVNVGRAGAANLNVTQEVEFVKPEA-KIVYLL 467 Query 356 KILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHM 415 + LQ+ P +IF ++ + +L LL S Sbjct 468 ECLQK-----TPPPVLIFCENKKDVDDIYEYL--------------LLKQVEAVSIHGDK 508 Query 416 TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA 474 +Q +++ I+ F++G ++LVAT VA +GLD P V+ + + + + GR R Sbjct 509 SQDERESAIKAFREGKKDVLVATDVASKGLDFPEIQHVINFDMPREIENYIHRIGRTGRR 568 Query 475 DQSVYA--FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD 524 A F+ + L +L +E + A ++ D +Y K++D Sbjct 569 GNKGVATTFINKNNTESLLLDLKYLLIEAKQKVPPALLEIPDDNQYLQKLQD 620 Score = 39.4 bits (90), Expect = 0.14, Method: Composition-based stats. Identities = 24/147 (16%), Positives = 44/147 (30%), Gaps = 23/147 (16%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKV----------VVLVNR 56 Q + + L G+++I TG+GKT + + K+ ++L Sbjct 249 QVQGLPVILSGRDMIGIAYTGSGKTLV-FTLPMVLFALEEECKLPIIQGEGPFGLILCPS 307 Query 57 VHLVTQHG-------EEFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQ 108 L Q + T L+ G + R + ++I T L Sbjct 308 RELARQTYDLVNSFTNALHKNGGHPQLRTLLAIGGIDLREQEHIFKKGVHMIIATPGRLL 367 Query 109 MALTSPEEEEHVELTVFSLIVVDECHH 135 L + ++ L DE Sbjct 368 D-LLNKKKINFKLCKYLGL---DEADR 390 >sp|Q53RK8|RH21_ORYSJ DEAD-box ATP-dependent RNA helicase 21 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0708600 PE=2 SV=1 Length=736 Score = 116 bits (291), Expect = 9e-26, Method: Composition-based stats. Identities = 54/298 (18%), Positives = 100/298 (34%), Gaps = 62/298 (21%) Query 248 ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN-----DALLIHDTVRAVD- 301 ++ G Q E+Q K+ + + R+ RRY + +++ + R +D Sbjct 421 KVVSIVGGQSIEEQGFKIRQGCEVVIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDM 480 Query 302 -------------ALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGP-- 346 + L+ E + I A LA P Sbjct 481 GFEPQVVGVLDAMPSSNLKPENEDEELDAKTIYRTTYMFSATMPPAVERLARKYLRNPVV 540 Query 347 ---------------------ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLL 385 E+ K+ L+KIL I+F T++SA + Sbjct 541 VTIGTAGKATDLITQNVIMTKESEKMSRLQKILTDL----GDKPAIVFCNTKKSADA--- 593 Query 386 WLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGL 445 + + L R L G +Q ++ + F++ +LVAT VA G+ Sbjct 594 ---RAKDLDKAGFRVTTLHG--------GKSQEQRETSLDGFRNRRFTVLVATDVAGRGI 642 Query 446 DIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALET 501 DIP V+ Y + ++ + GR RA + A T + ++ +L +++ Sbjct 643 DIPDVAHVINYEMPSSIDTYTHRIGRTGRAGKKGLATSFLTLENTDIFFDLKQMLIQS 700 Score = 56.3 bits (134), Expect = 8e-07, Method: Composition-based stats. Identities = 32/142 (23%), Positives = 53/142 (37%), Gaps = 20/142 (14%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVD---------GAKVVVLVNRV 57 Q I L+ +++I TG+GKT A ++ + G VV+ Sbjct 342 QMASIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPISEENEAEGPYAVVMAPTR 401 Query 58 HLVTQHGEE----FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTS 113 L Q EE F L + V+ + G GF + + +++I T L L Sbjct 402 EL-AQQIEEETVKFATYLGIKV-VSIVGGQSIEEQGFK-IRQGCEVVIATPGRLLDCL-- 456 Query 114 PEEEEHVELTVFSLIVVDECHH 135 E + L + +V+DE Sbjct 457 --ERRYAVLNQCNYVVLDEADR 476 >sp|A1A4H6|DDX27_BOVIN Probable ATP-dependent RNA helicase DDX27 OS=Bos taurus OX=9913 GN=DDX27 PE=2 SV=1 Length=765 Score = 116 bits (291), Expect = 9e-26, Method: Composition-based stats. Identities = 57/307 (19%), Positives = 119/307 (39%), Gaps = 63/307 (21%) Query 289 DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFD----DRKNELAHLATH 344 + L++ + R +D Y E + + +C+ R LF D +LA ++ Sbjct 335 EVLILDEADRMLDE-------YFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLK 387 Query 345 GPENPKLE-------MLEKILQRQFSSSNSPR---------------GIIFTRTRQSAHS 382 P + L + R + R ++FT+T++ AH Sbjct 388 NPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHR 447 Query 383 LLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAE 442 + + L L+G +++Q + E +++F+D +++LVAT VA Sbjct 448 MHILLG--------------LMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAA 493 Query 443 EGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALE 500 GLDI V+ + + V GR ARA ++ + + E R++ +E++ A Sbjct 494 RGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKAAKA 553 Query 501 TLMEQAVA---------AVQKMDQAEY-----QAKIRDLQQAALTKRAAQAAQRENQRQQ 546 + + + ++KM++ Y +A+ +++Q++ AQ + + Sbjct 554 PVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQKSEAQINTAQRLLEKGKEAP 613 Query 547 FPVEHVQ 553 P Sbjct 614 NPEPERS 620 Score = 57.1 bits (136), Expect = 4e-07, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 48/127 (38%), Gaps = 8/127 (6%) Query 14 ALEGKNIIIWLPTGAGKTRAAAYVAKRHL----ETVDGAKVVVLVNRVHLVTQHGEEFRR 69 L GK+I TG GKT A A L +V+VLV L Q ++ Sbjct 221 GLLGKDICACAATGTGKTAAFALPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQ 280 Query 70 MLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLI 128 + T L+ G + ++ L D+LI T L L + L+ ++ Sbjct 281 LAQFCSITTCLAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPS---FHLSSIEVL 337 Query 129 VVDECHH 135 ++DE Sbjct 338 ILDEADR 344 >sp|Q8SR63|RRP3_ENCCU ATP-dependent rRNA helicase RRP3 OS=Encephalitozoon cuniculi (strain GB-M1) OX=284813 GN=RRP3 PE=3 SV=1 Length=400 Score = 113 bits (283), Expect = 9e-26, Method: Composition-based stats. Identities = 39/185 (21%), Positives = 76/185 (41%), Gaps = 18/185 (10%) Query 358 LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ 417 L S I+F +A + L L + +G + + ++Q Sbjct 230 LVELLEMSQGMSVIVFVSMCVTARVMSLALAR--------------LGFCSEALHGELSQ 275 Query 418 RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQ 476 ++E ++ F++ N+LV T + GLDI H ++V+ + + + + GR ARA + Sbjct 276 EKREEAMRSFKESRFNVLVCTDLGSRGLDISHVDLVINFDVPKSGKDYIHRVGRTARAGR 335 Query 477 SVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD-LQQAALTKRAA 535 S A + + I LE +E+ + K + A+I + +Q+A T + Sbjct 336 SGTAITLVTQYDVEQIQKIEFTLEKKLEEF--KMMKKNFGTICARIEEAIQEAQETLKEE 393 Query 536 QAAQR 540 + R Sbjct 394 RKRNR 398 Score = 53.3 bits (126), Expect = 5e-06, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 46/131 (35%), Gaps = 6/131 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE 65 Q +VI L G ++I TG+GKT A HL + + +V+ L +Q E Sbjct 28 QRQVIPAVLGGGDVIAVSQTGSGKTLAFVLPIVSHLLQKNRSFYCLVVAPTRELSSQIAE 87 Query 66 EFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTA-ELLQMALTSPEEEEHVELTV 124 F V L G L++ +++ T + + L + Sbjct 88 CFNMFQATGLRVCLLVGGANFNVQANQLSKRPHVVVGTPGRIAEHVLKTKS----FRTER 143 Query 125 FSLIVVDECHH 135 V+DE Sbjct 144 VRKFVLDEADR 154 >sp|Q8CRP6|CSHA_STAES DEAD-box ATP-dependent RNA helicase CshA OS=Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200) OX=176280 GN=cshA PE=3 SV=1 Length=509 Score = 115 bits (287), Expect = 9e-26, Method: Composition-based stats. Identities = 64/352 (18%), Positives = 110/352 (31%), Gaps = 47/352 (13%) Query 248 ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYA----LHLRRYNDALLIHDTVRAVDAL 303 ++ FG E+Q+ L + RV L+ LI D + + Sbjct 99 QVVTVFGGMPIERQIKVLKRGPQIVVGTPGRVIDHLNRRTLKTQGIHTLILDEADEMMNM 158 Query 304 AALQDFYHREHVTKTQILCAERRLLALFD----DRKNELAHLATHGPENPK--------- 350 + D + AE+R LF EL P+ K Sbjct 159 GFIDDMRFIMD-----KIPAEQRQTMLFSATMPKAIQELVQQFMKAPKIIKTMNNEMSDP 213 Query 351 --------LEMLEKI--LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRA 400 ++ LEK I+F RT++ L L + Sbjct 214 QIDEYYTIVKELEKFDTFTNFLDVHQPELAIVFGRTKRRVDELTSALLSK---------- 263 Query 401 QLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT 460 G +TQ + EV++KF++ +++LVAT VA GLDI + V + + Sbjct 264 ----GYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDISGVSHVYNFDIPQ 319 Query 461 NEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQ 519 + S GR RA + A I + M+ +K + Sbjct 320 DTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDVNNRRMKALRPPHRKEVLKARE 379 Query 520 AKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQLLCINCMVAVGHGSDLRK 571 I+D Q +++ QR + + +L+ V ++ Sbjct 380 DDIKDRVQNWMSRENEPRLQRISSELLKEYDSTELVASLLQELVEANDEVEV 431 Score = 51.3 bits (121), Expect = 2e-05, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 49/128 (38%), Gaps = 5/128 (4%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEE 66 Q + I ALEG +I+ TG GKT A + G + ++L L Q E+ Sbjct 29 QKDSIPYALEGDDILGQAQTGTGKTGAFGIPLIEKVVGQQGVQSLILAPTRELAMQVAEQ 88 Query 67 FRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF 125 R G + V T+ G M L R +++ T + L ++ Sbjct 89 LREFSKGQKVQVVTVFGGMPIERQIKVLKRGPQIVVGTPGRVIDHLNRRT----LKTQGI 144 Query 126 SLIVVDEC 133 +++DE Sbjct 145 HTLILDEA 152 >sp|Q2UAK1|FAL1_ASPOR ATP-dependent RNA helicase fal1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=fal1 PE=3 SV=1 Length=398 Score = 113 bits (282), Expect = 1e-25, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 59/147 (40%), Gaps = 16/147 (11%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K E L + + + +IF TR+ L +++ S Sbjct 246 KEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREAN--------------FTVS 291 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 S M Q+++ ++Q F+ G +L++T V G+D+ ++V+ Y L TN + + Sbjct 292 SMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHRI 351 Query 470 GR-ARADQSVYAF-VATEGSRELKREL 494 GR R + A T + R++ Sbjct 352 GRSGRFGRKGVAINFVTSDDVRILRDI 378 Score = 45.6 bits (106), Expect = 0.001, Method: Composition-based stats. Identities = 21/120 (18%), Positives = 41/120 (34%), Gaps = 6/120 (5%) Query 16 EGKNIIIWLPTGAGKTRAAAYVAKRHLETV-DGAKVVVLVNRVHLVTQHGEEFRRMLDGR 74 +G++ I +G GKT + + ++TV ++ +VL L TQ + D Sbjct 60 KGRDTIAQAQSGTGKTATFSISILQVIDTVVRESQALVLSPTRELATQIQSVIMALGDYM 119 Query 75 WTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC 133 G L ++ T + + H+ ++V+DE Sbjct 120 NVQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRVADMI----RRRHLRTRHIKMLVLDEA 175 >sp|Q5B3H7|DBP8_EMENI ATP-dependent RNA helicase dbp8 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=dbp8 PE=3 SV=1 Length=525 Score = 115 bits (287), Expect = 1e-25, Method: Composition-based stats. Identities = 49/201 (24%), Positives = 87/201 (43%), Gaps = 23/201 (11%) Query 346 PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 P + L +L + + + S I+FT T +SA L L+ +G Sbjct 331 PLTHREAFLHVLLSTESNITKS--AIVFTNTTKSADLLERLLRS--------------LG 374 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465 +S + + Q ++ + +F+ +LVAT VA GLDIP ++VV + + N Sbjct 375 HRVTSLHSLLPQSERNSNLARFRASAARVLVATDVASRGLDIPSVSLVVNFEVPRNPDDY 434 Query 466 VQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQK--MDQAEYQAKI 522 V GR ARA ++ A G R+++ L A+E + + + ++ ++ AK Sbjct 435 VHRVGRTARAGRTGEAVTLV-GQRDVQLVL---AIEERIGRKMVEYEEEGVNLEARVAKG 490 Query 523 RDLQQAALTKRAAQAAQRENQ 543 L++ KR A E + Sbjct 491 SLLKEVGAAKREAMVEIDEGR 511 Score = 58.7 bits (140), Expect = 1e-07, Method: Composition-based stats. Identities = 43/245 (18%), Positives = 85/245 (35%), Gaps = 20/245 (8%) Query 15 LEGKNIIIWLPTGAGKTRAA--AYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLD 72 L+G++ I TG+GKT A + ++ E G V+L L Q E+ + + Sbjct 130 LKGRDCIGGSRTGSGKT-IAFSVPILQKWAEDPFGIFAVILTPTRELALQIFEQIKAISA 188 Query 73 GRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVD 131 + ++G R+ LA +++ T L + + + L ++V+D Sbjct 189 PQSMKPVLITGGTDMRSQAIELAGRPHVVVATPGRLADHINTSGTDTVAGLKRVRMVVLD 248 Query 132 ECHHTHKDTVYNVIMS-----QYLELKLQRAQPL------PQVLGLTA---SPGTGGASK 177 E +++ +L QR L P+V L + +PG Sbjct 249 EADRLLSPGPGSMLPDVETCLSFLPGPSQRQTLLFTATLTPEVRALKSMPQTPGKPPIFV 308 Query 178 LDGAINHVLQLCANLDTWCIMSPQNCCPQLQEH--SQQPCKQYNLCHRRSQDPFGDLLKK 235 + + + L T + P S + + + DLL++ Sbjct 309 TEISTEAKDTVPPTLRTTYVQVPLTHREAFLHVLLSTESNITKSAIVFTNTTKSADLLER 368 Query 236 LMDQI 240 L+ + Sbjct 369 LLRSL 373 >sp|Q9Z6C9|CSHA_LIMRT ATP-dependent RNA helicase CshA OS=Limosilactobacillus reuteri OX=1598 GN=cshA PE=3 SV=1 Length=497 Score = 114 bits (286), Expect = 1e-25, Method: Composition-based stats. Identities = 54/349 (15%), Positives = 120/349 (34%), Gaps = 24/349 (7%) Query 182 INHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGD-LLKKLMDQI 240 I +V N+ I + Q QE + K H R Q +G +++ + + Sbjct 60 IENVDTENPNIQAIIISPTRELAIQTQEELYRLGKDK---HVRVQVVYGGADIRRQIKSL 116 Query 241 HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV 300 H ++ + + VKL L + + + ++++ Sbjct 117 KQHPQILVGTPGRLRDHINRHTVKLDHIKTLVLDEADEMLNMGFLEDIESIIKETPDDRQ 176 Query 301 DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQR 360 L + + + + E + + + + + K +++ +++ Sbjct 177 TLLFSATMPPEIKRIGVQFMSDPETVRIKAKELTTDLVDQYYVRARDYEKFDIMTRLIDV 236 Query 361 QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ 420 Q + I+F RT++ L L + G + +TQ + Sbjct 237 Q----DPDLTIVFGRTKRRVDELSKGLIAR--------------GYNAAGIHGDLTQDKR 278 Query 421 QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVY 479 +++ KF++ L++LVAT VA GLDI V Y + ++ S V GR RA Sbjct 279 SKIMWKFKNNELDILVATDVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGV 338 Query 480 AF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQ 527 + T + E+ ++ ++ + + + D+ + Sbjct 339 SLTFVTPNEMDYLHEIEKLTRVRMLPLKPPTAEEAFKGQVASAFNDIDE 387 Score = 57.1 bits (136), Expect = 3e-07, Method: Composition-based stats. Identities = 29/123 (24%), Positives = 48/123 (39%), Gaps = 10/123 (8%) Query 15 LEGKNIIIWLPTGAGKTRAAAY---VAKRHLETVDGAKVVVLVNRVHLVTQ-HGEEFRRM 70 LEGK++I TG GKT AA+ + + + +++ L Q E +R Sbjct 36 LEGKDVIGQAQTGTGKT--AAFGLPIIENVDTENPNIQAIIISPTRELAIQTQEELYRLG 93 Query 71 LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV 130 D V + G R L + +L+ T L+ + V+L +V+ Sbjct 94 KDKHVRVQVVYGGADIRRQIKSLKQHPQILVGTPGRLRDHINRHT----VKLDHIKTLVL 149 Query 131 DEC 133 DE Sbjct 150 DEA 152 >sp|Q5AUL4|FAL1_EMENI ATP-dependent RNA helicase fal1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=fal1 PE=3 SV=1 Length=399 Score = 113 bits (282), Expect = 1e-25, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 59/147 (40%), Gaps = 16/147 (11%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K E L + + + +IF TR+ L +++ S Sbjct 247 KEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREAN--------------FTVS 292 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 S M Q+++ ++Q F+ G +L++T V G+D+ ++V+ Y L TN + + Sbjct 293 SMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHRI 352 Query 470 GR-ARADQSVYAF-VATEGSRELKREL 494 GR R + A T + R++ Sbjct 353 GRSGRFGRKGVAINFVTSDDVRILRDI 379 Score = 43.6 bits (101), Expect = 0.005, Method: Composition-based stats. Identities = 20/120 (17%), Positives = 37/120 (31%), Gaps = 6/120 (5%) Query 16 EGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGR 74 +G++ I +G GKT + + V + +VL L TQ + D Sbjct 61 KGRDTIAQAQSGTGKTATFSISALQVIDTVVRETQALVLSPTRELATQIQSVIMALGDYM 120 Query 75 WTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC 133 G L ++ T + + H+ ++V+DE Sbjct 121 NVQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRVADMI----RRRHLRTRHIKMLVLDEA 176 >sp|Q58083|H669_METJA Probable ATP-dependent RNA helicase MJ0669 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ0669 PE=1 SV=1 Length=367 Score = 112 bits (280), Expect = 1e-25, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 71/167 (43%), Gaps = 24/167 (14%) Query 346 PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 EN + E L ++L+ G++F +T++ L L+ IG Sbjct 222 NENERFEALCRLLKN-----KEFYGLVFCKTKRDTKELASMLRD--------------IG 262 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465 + ++Q +++VI+ F+ + +L+AT V G+D+ N V+ Y L N S Sbjct 263 FKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESY 322 Query 466 VQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQ 511 + GR RA + A +R ++L +E M+ + ++ Sbjct 323 MHRIGRTGRAGKKGKAISII--NRREYKKLRY--IERAMKLKIKKLK 365 Score = 51.0 bits (120), Expect = 2e-05, Method: Composition-based stats. Identities = 37/225 (16%), Positives = 83/225 (37%), Gaps = 15/225 (7%) Query 19 NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRM-LDGRWTV 77 NI+ TG+GKT + A + +G + ++L L Q +E + + + Sbjct 46 NIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKI 105 Query 78 TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHTH 137 + G L + ++++ T + + + L ++DE Sbjct 106 AKIYGGKAIYPQIKAL-KNANIVVGTPGRILDHIN----RGTLNLKNVKYFILDEA---- 156 Query 138 KDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS-P--GTGGASKLDGAINHVL-QLCANLD 193 D + N+ + +E L ++L +A+ P A K G + + ++ AN++ Sbjct 157 -DEMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKINANIE 215 Query 194 TWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMD 238 + +N + + + Y L +++ +L L D Sbjct 216 QSYVEVNENERFEALCRLLKNKEFYGLVFCKTKRDTKELASMLRD 260 >sp|Q1DTB3|FAL1_COCIM ATP-dependent RNA helicase FAL1 OS=Coccidioides immitis (strain RS) OX=246410 GN=FAL1 PE=3 SV=2 Length=399 Score = 113 bits (282), Expect = 1e-25, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 59/147 (40%), Gaps = 16/147 (11%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K E L + + + +IF TR+ L +++ S Sbjct 247 KEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREAN--------------FTVS 292 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 S M Q+++ ++Q F+ G +L++T V G+D+ ++V+ Y L +N + + Sbjct 293 SMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRI 352 Query 470 GR-ARADQSVYAF-VATEGSRELKREL 494 GR R + A T + R++ Sbjct 353 GRSGRFGRKGVAINFVTSEDVRILRDI 379 Score = 45.9 bits (107), Expect = 8e-04, Method: Composition-based stats. Identities = 20/120 (17%), Positives = 38/120 (32%), Gaps = 6/120 (5%) Query 16 EGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGR 74 +G++ I +G GKT A + + + + +VL L TQ + D Sbjct 61 KGRDTIAQAQSGTGKTATFAISILQVIDTALRETQALVLSPTRELATQIQNVIMAVGDYM 120 Query 75 WTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC 133 G L ++ T + + H+ ++V+DE Sbjct 121 NVQCHACIGGTNVGDDIRKLDHGQHVVSGTPGRVADMI----RRRHLRTRHIKMLVLDEA 176 >sp|Q0CAS8|FAL1_ASPTN ATP-dependent RNA helicase fal1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=fal1 PE=3 SV=1 Length=399 Score = 113 bits (282), Expect = 1e-25, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 59/147 (40%), Gaps = 16/147 (11%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K E L + + + +IF TR+ L +++ S Sbjct 247 KEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREAN--------------FTVS 292 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 S M Q+++ ++Q F+ G +L++T V G+D+ ++V+ Y L TN + + Sbjct 293 SMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHRI 352 Query 470 GR-ARADQSVYAF-VATEGSRELKREL 494 GR R + A T + R++ Sbjct 353 GRSGRFGRKGVAINFVTSDDVRILRDI 379 Score = 47.5 bits (111), Expect = 3e-04, Method: Composition-based stats. Identities = 21/120 (18%), Positives = 39/120 (33%), Gaps = 6/120 (5%) Query 16 EGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGR 74 +G++ I +G GKT A + + V ++ +VL L TQ + D Sbjct 61 KGRDTIAQAQSGTGKTATFAISILQVIDTVVRESQALVLSPTRELATQIQSVIMALGDYM 120 Query 75 WTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC 133 G L ++ T + + H+ ++V+DE Sbjct 121 NVQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRVADMI----RRRHLRTRHIKMLVLDEA 176 >sp|A5AAE5|FAL1_ASPNC ATP-dependent RNA helicase fal1 OS=Aspergillus niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) OX=425011 GN=fal1 PE=3 SV=2 Length=399 Score = 113 bits (282), Expect = 1e-25, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 59/147 (40%), Gaps = 16/147 (11%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K E L + + + +IF TR+ L +++ S Sbjct 247 KEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREAN--------------FTVS 292 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 S M Q+++ ++Q F+ G +L++T V G+D+ ++V+ Y L TN + + Sbjct 293 SMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHRI 352 Query 470 GR-ARADQSVYAF-VATEGSRELKREL 494 GR R + A T + R++ Sbjct 353 GRSGRFGRKGVAINFVTSDDVRILRDI 379 Score = 45.6 bits (106), Expect = 0.001, Method: Composition-based stats. Identities = 21/120 (18%), Positives = 41/120 (34%), Gaps = 6/120 (5%) Query 16 EGKNIIIWLPTGAGKTRAAAYVAKRHLETV-DGAKVVVLVNRVHLVTQHGEEFRRMLDGR 74 +G++ I +G GKT + + ++TV ++ +VL L TQ + D Sbjct 61 KGRDTIAQAQSGTGKTATFSISILQVIDTVVRESQALVLSPTRELATQIQSVIMALGDYM 120 Query 75 WTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC 133 G L ++ T + + H+ ++V+DE Sbjct 121 NVQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRVADMI----RRRHLRTRHIKMLVLDEA 176 >sp|A1C595|FAL1_ASPCL ATP-dependent RNA helicase fal1 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=fal1 PE=3 SV=1 Length=399 Score = 113 bits (282), Expect = 1e-25, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 59/147 (40%), Gaps = 16/147 (11%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K E L + + + +IF TR+ L +++ S Sbjct 247 KEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREAN--------------FTVS 292 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 S M Q+++ ++Q F+ G +L++T V G+D+ ++V+ Y L TN + + Sbjct 293 SMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHRI 352 Query 470 GR-ARADQSVYAF-VATEGSRELKREL 494 GR R + A T + R++ Sbjct 353 GRSGRFGRKGVAINFVTSDDVRILRDI 379 Score = 44.8 bits (104), Expect = 0.002, Method: Composition-based stats. Identities = 20/120 (17%), Positives = 38/120 (32%), Gaps = 6/120 (5%) Query 16 EGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGR 74 +G++ I +G GKT + + + V + +VL L TQ + D Sbjct 61 KGRDTIAQAQSGTGKTATFSISILQVIDTAVRETQALVLSPTRELATQIQSVIMALGDYM 120 Query 75 WTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC 133 G L ++ T + + H+ ++V+DE Sbjct 121 NVQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRVADMI----RRRHLRTRHIKMLVLDEA 176 >sp|A1CKJ0|DBP8_ASPCL ATP-dependent RNA helicase dbp8 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=dbp8 PE=3 SV=1 Length=523 Score = 114 bits (286), Expect = 1e-25, Method: Composition-based stats. Identities = 40/199 (20%), Positives = 75/199 (38%), Gaps = 17/199 (9%) Query 352 EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ 411 E +L +S P IIF ++A L L++ +S Sbjct 334 EAFLHVLLSTEGNSTKP-AIIFCNHTKTADLLERMLRRLS--------------HRVTSL 378 Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 + + Q ++ + +F+ +LVAT VA GLDIP ++VV Y + N V GR Sbjct 379 HSLLPQSERNANLARFRASAARILVATDVASRGLDIPSVSLVVNYDVPRNPDDYVHRVGR 438 Query 472 -ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAA 529 ARA +S + + + +L + + E + V + ++++ +A Sbjct 439 TARAGRSGESVTLVGQRDVQLVLAIEARVGRQMEEWSEEGVSIEGRVVRTGVLKEVGEAK 498 Query 530 LTKRAAQAAQRENQRQQFP 548 R+ ++ Sbjct 499 REASGEIDEGRDVLGRKRN 517 Score = 56.0 bits (133), Expect = 8e-07, Method: Composition-based stats. Identities = 31/187 (17%), Positives = 63/187 (34%), Gaps = 6/187 (3%) Query 26 TGAGKTRAAAYV--AKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV-TTLSG 82 TG+GKT A V ++ E G ++L L Q E+ + + + ++G Sbjct 139 TGSGKT-IAFSVPMLQKWAEDPLGIFGLILTPTRELALQIFEQIKAISAPQSMKPVLITG 197 Query 83 DMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHTHKDTVY 142 R+ LA +++ T L + S E+ L ++V+DE Sbjct 198 GTDMRSQALALAGRPHVVVATPGRLADHIKSSGEDTVCGLKRVRMVVLDEADRLLSSGPG 257 Query 143 NVI--MSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSP 200 +++ + L ++ + T +P + A N + + + Sbjct 258 SMLPDVETCLSALPPSSERQTLLFTATVTPEVRALKNMPRAANKPPVFVTEISSESQGTV 317 Query 201 QNCCPQL 207 Q Sbjct 318 PPTLKQT 324 >sp|Q2GWJ5|FAL1_CHAGB ATP-dependent RNA helicase FAL1 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=FAL1 PE=3 SV=1 Length=394 Score = 112 bits (281), Expect = 1e-25, Method: Composition-based stats. Identities = 29/147 (20%), Positives = 59/147 (40%), Gaps = 16/147 (11%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K + L + + + +IF TR+ L +++ S Sbjct 249 KEDWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREAN--------------FTVS 294 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 S M Q+++ ++Q F+ G +L++T V G+D+ ++V+ Y L +N + + Sbjct 295 SMHGDMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRI 354 Query 470 GR-ARADQSVYAF-VATEGSRELKREL 494 GR R + A T + R++ Sbjct 355 GRSGRFGRKGVAINFVTSEDVRILRDI 381 Score = 44.4 bits (103), Expect = 0.003, Method: Composition-based stats. Identities = 21/120 (18%), Positives = 40/120 (33%), Gaps = 6/120 (5%) Query 16 EGKNIIIWLPTGAGKTRAAAYVAKRHLET-VDGAKVVVLVNRVHLVTQHGEEFRRMLDGR 74 +G++ I +G GKT + + ++T V + +VL L TQ + D Sbjct 63 KGRDTIAQAQSGTGKTATFSISMLQVIDTAVRETQALVLSPTRELATQIQSVVMALGDYM 122 Query 75 WTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC 133 G L ++ T + + H+ ++V+DE Sbjct 123 NVQCHACIGGTNVGEDIRKLDYGQHIVSGTPGRVADMI----RRRHLRTRHIKMLVLDEA 178 >sp|Q5U526|I4A3A_XENLA Eukaryotic initiation factor 4A-III-A OS=Xenopus laevis OX=8355 GN=eif4a3-a PE=2 SV=1 Length=415 Score = 113 bits (282), Expect = 1e-25, Method: Composition-based stats. Identities = 29/165 (18%), Positives = 64/165 (39%), Gaps = 19/165 (12%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K + L + + + + +IF T++ L +++ S Sbjct 268 KFDTLCDL----YDTLTITQAVIFCNTKRKVDWLTEKMREAN--------------FTVS 309 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 S M Q++++ ++++F+ G +L++T V GLD+P ++++ Y L N + Sbjct 310 SMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI 369 Query 470 GR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM 513 GR R A + I + T +++ V + Sbjct 370 GRSGRYGGKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADL 414 Score = 45.6 bits (106), Expect = 0.001, Method: Composition-based stats. Identities = 19/131 (15%), Positives = 39/131 (30%), Gaps = 10/131 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTR---AAAYVAKRHLETVDGAKVVVLVNRVHLVTQH 63 Q I ++G+++I +G GKT + V + ++L L Q Sbjct 69 QQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDI--QVRETQALILAPTRELAGQI 126 Query 64 GEEFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 + + D G L ++ T + + + Sbjct 127 QKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMI----RRRSLRT 182 Query 123 TVFSLIVVDEC 133 ++V+DE Sbjct 183 RAIKMLVLDEA 193 >sp|A1D071|FAL1_NEOFI ATP-dependent RNA helicase fal1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=fal1 PE=3 SV=1 Length=399 Score = 112 bits (281), Expect = 1e-25, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 59/147 (40%), Gaps = 16/147 (11%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K E L + + + +IF TR+ L +++ S Sbjct 247 KEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREAN--------------FTVS 292 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 S M Q+++ ++Q F+ G +L++T V G+D+ ++V+ Y L TN + + Sbjct 293 SMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHRI 352 Query 470 GR-ARADQSVYAF-VATEGSRELKREL 494 GR R + A T + R++ Sbjct 353 GRSGRFGRKGVAINFVTSDDVRILRDI 379 Score = 44.8 bits (104), Expect = 0.002, Method: Composition-based stats. Identities = 21/120 (18%), Positives = 40/120 (33%), Gaps = 6/120 (5%) Query 16 EGKNIIIWLPTGAGKTRAAAYVAKRHLET-VDGAKVVVLVNRVHLVTQHGEEFRRMLDGR 74 +G++ I +G GKT + + ++T V + +VL L TQ + D Sbjct 61 KGRDTIAQAQSGTGKTATFSISILQVIDTVVRETQALVLSPTRELATQIQSVIMALGDYM 120 Query 75 WTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC 133 G L ++ T + + H+ ++V+DE Sbjct 121 NVQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRVADMI----RRRHLRTRHIKMLVLDEA 176 >sp|Q91VC3|IF4A3_MOUSE Eukaryotic initiation factor 4A-III OS=Mus musculus OX=10090 GN=Eif4a3 PE=1 SV=3 Length=411 Score = 112 bits (281), Expect = 2e-25, Method: Composition-based stats. Identities = 29/165 (18%), Positives = 65/165 (39%), Gaps = 19/165 (12%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K + L + + + + +IF T++ L +++ S Sbjct 264 KFDTLCDL----YDTLTITQAVIFCNTKRKVDWLTEKMREAN--------------FTVS 305 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 S M Q++++ ++++F+ G +L++T V GLD+P ++++ Y L N + Sbjct 306 SMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI 365 Query 470 GR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM 513 GR R + A + I + T +++ V + Sbjct 366 GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADL 410 Score = 44.0 bits (102), Expect = 0.004, Method: Composition-based stats. Identities = 20/129 (16%), Positives = 41/129 (32%), Gaps = 6/129 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q I ++G+++I +G GKT + V + V + ++L L Q + Sbjct 65 QQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQCLDIQVRETQALILAPTRELAVQIQK 124 Query 66 EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 + D G L ++ T + + + Sbjct 125 GLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMI----RRRSLRTRA 180 Query 125 FSLIVVDEC 133 ++V+DE Sbjct 181 IKMLVLDEA 189 >sp|A6QSQ0|FAL1_AJECN ATP-dependent RNA helicase FAL1 OS=Ajellomyces capsulatus (strain NAm1 / WU24) OX=2059318 GN=FAL1 PE=3 SV=1 Length=450 Score = 113 bits (283), Expect = 2e-25, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 59/147 (40%), Gaps = 16/147 (11%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K E L + + + +IF TR+ L +++ S Sbjct 247 KEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREAN--------------FTVS 292 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 S M Q+++ ++Q F+ G +L++T V G+D+ ++V+ Y L +N + + Sbjct 293 SMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRI 352 Query 470 GR-ARADQSVYAF-VATEGSRELKREL 494 GR R + A T + R++ Sbjct 353 GRSGRFGRKGVAINFVTSEDVRILRDI 379 Score = 44.8 bits (104), Expect = 0.002, Method: Composition-based stats. Identities = 21/120 (18%), Positives = 40/120 (33%), Gaps = 6/120 (5%) Query 16 EGKNIIIWLPTGAGKTRAAAYVAKRHLETV-DGAKVVVLVNRVHLVTQHGEEFRRMLDGR 74 +G++ I +G GKT + + ++TV + +VL L TQ + D Sbjct 61 KGRDTIAQAQSGTGKTATFSISILQVIDTVLRETQALVLSPTRELATQIQSVVMALGDYM 120 Query 75 WTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC 133 G L ++ T + + H+ ++V+DE Sbjct 121 NVQCHACIGGTNVGEDIRKLDHGQHVVSGTPGRVADMI----RRRHLRTRHIKMLVLDEA 176 >sp|Q3B8Q2|IF4A3_RAT Eukaryotic initiation factor 4A-III OS=Rattus norvegicus OX=10116 GN=Eif4a3 PE=1 SV=1 Length=411 Score = 112 bits (281), Expect = 2e-25, Method: Composition-based stats. Identities = 29/165 (18%), Positives = 65/165 (39%), Gaps = 19/165 (12%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K + L + + + + +IF T++ L +++ S Sbjct 264 KFDTLCDL----YDTLTITQAVIFCNTKRKVDWLTEKMREAN--------------FTVS 305 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 S M Q++++ ++++F+ G +L++T V GLD+P ++++ Y L N + Sbjct 306 SMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI 365 Query 470 GR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM 513 GR R + A + I + T +++ V + Sbjct 366 GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADL 410 Score = 44.0 bits (102), Expect = 0.003, Method: Composition-based stats. Identities = 19/131 (15%), Positives = 39/131 (30%), Gaps = 10/131 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTR---AAAYVAKRHLETVDGAKVVVLVNRVHLVTQH 63 Q I ++G+++I +G GKT + V + ++L L Q Sbjct 65 QQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI--QVRETQALILAPTRELAVQI 122 Query 64 GEEFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 + + D G L ++ T + + + Sbjct 123 QKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMI----RRRSLRT 178 Query 123 TVFSLIVVDEC 133 ++V+DE Sbjct 179 RAIKMLVLDEA 189 >sp|A6M931|IF4A3_PIG Eukaryotic initiation factor 4A-III OS=Sus scrofa OX=9823 GN=EIF4A3 PE=2 SV=1 Length=411 Score = 112 bits (281), Expect = 2e-25, Method: Composition-based stats. Identities = 29/165 (18%), Positives = 65/165 (39%), Gaps = 19/165 (12%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K + L + + + + +IF T++ L +++ S Sbjct 264 KFDTLCDL----YDTLTITQAVIFCNTKRKVDWLTEKMREAN--------------FTVS 305 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 S M Q++++ ++++F+ G +L++T V GLD+P ++++ Y L N + Sbjct 306 SMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI 365 Query 470 GR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM 513 GR R + A + I + T +++ V + Sbjct 366 GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADL 410 Score = 44.0 bits (102), Expect = 0.003, Method: Composition-based stats. Identities = 19/131 (15%), Positives = 39/131 (30%), Gaps = 10/131 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTR---AAAYVAKRHLETVDGAKVVVLVNRVHLVTQH 63 Q I ++G+++I +G GKT + V + ++L L Q Sbjct 65 QQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI--QVRETQALILAPTRELAVQI 122 Query 64 GEEFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 + + D G L ++ T + + + Sbjct 123 QKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMI----RRRSLRT 178 Query 123 TVFSLIVVDEC 133 ++V+DE Sbjct 179 RAIKMLVLDEA 189 >sp|Q2NL22|IF4A3_BOVIN Eukaryotic initiation factor 4A-III OS=Bos taurus OX=9913 GN=EIF4A3 PE=2 SV=3 Length=411 Score = 112 bits (281), Expect = 2e-25, Method: Composition-based stats. Identities = 29/165 (18%), Positives = 65/165 (39%), Gaps = 19/165 (12%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K + L + + + + +IF T++ L +++ S Sbjct 264 KFDTLCDL----YDTLTITQAVIFCNTKRKVDWLTEKMREAN--------------FTVS 305 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 S M Q++++ ++++F+ G +L++T V GLD+P ++++ Y L N + Sbjct 306 SMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI 365 Query 470 GR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM 513 GR R + A + I + T +++ V + Sbjct 366 GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADL 410 Score = 44.0 bits (102), Expect = 0.003, Method: Composition-based stats. Identities = 19/131 (15%), Positives = 39/131 (30%), Gaps = 10/131 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTR---AAAYVAKRHLETVDGAKVVVLVNRVHLVTQH 63 Q I ++G+++I +G GKT + V + ++L L Q Sbjct 65 QQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI--QVRETQALILAPTRELAVQI 122 Query 64 GEEFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 + + D G L ++ T + + + Sbjct 123 QKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMI----RRRSLRT 178 Query 123 TVFSLIVVDEC 133 ++V+DE Sbjct 179 RAIKMLVLDEA 189 >sp|Q6CX73|FAL1_KLULA ATP-dependent RNA helicase FAL1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=FAL1 PE=3 SV=1 Length=398 Score = 112 bits (280), Expect = 2e-25, Method: Composition-based stats. Identities = 33/147 (22%), Positives = 57/147 (39%), Gaps = 16/147 (11%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K E L + S + +IF TR+ L L Q S Sbjct 247 KEEWKFDTLCDLYDSLTITQCVIFCNTRKKVDWLSRKLTQ--------------TNFSVS 292 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 S M Q ++ +V+ F+ G +L++T V G+D+ ++V+ Y + N + + Sbjct 293 SMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRI 352 Query 470 GR-ARADQSVYAF-VATEGSRELKREL 494 GR R + A T+ R +E+ Sbjct 353 GRSGRFGRKGVAINFITKEERPKLKEI 379 Score = 51.0 bits (120), Expect = 2e-05, Method: Composition-based stats. Identities = 19/129 (15%), Positives = 45/129 (35%), Gaps = 6/129 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q I + GK++I +G GKT + + + +VL L +Q Sbjct 50 QSRAISQIISGKDVIAQAQSGTGKTATFTIGLLQAIDSKSKELQALVLSPTRELASQSES 109 Query 66 EFRRMLDGRWTVTTL-SGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 + D +G + +++ ++ T + + + + + + Sbjct 110 VISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQVVSGTPGRVLDMI----KRQVLNVRN 165 Query 125 FSLIVVDEC 133 ++V+DE Sbjct 166 CKILVLDEA 174 >sp|Q4R3Q1|IF4A3_MACFA Eukaryotic initiation factor 4A-III OS=Macaca fascicularis OX=9541 GN=EIF4A3 PE=2 SV=3 Length=411 Score = 112 bits (281), Expect = 2e-25, Method: Composition-based stats. Identities = 29/165 (18%), Positives = 65/165 (39%), Gaps = 19/165 (12%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K + L + + + + +IF T++ L +++ S Sbjct 264 KFDTLCDL----YDTLTITQAVIFCNTKRKVDWLTEKMREAN--------------FTVS 305 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 S M Q++++ ++++F+ G +L++T V GLD+P ++++ Y L N + Sbjct 306 SMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI 365 Query 470 GR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM 513 GR R + A + I + T +++ V + Sbjct 366 GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADL 410 Score = 42.1 bits (97), Expect = 0.015, Method: Composition-based stats. Identities = 19/131 (15%), Positives = 39/131 (30%), Gaps = 10/131 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTR---AAAYVAKRHLETVDGAKVVVLVNRVHLVTQH 63 Q I ++G+++I +G GKT + V + ++L L Q Sbjct 65 QQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI--QVRETQALILAPARELAVQI 122 Query 64 GEEFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 + + D G L ++ T + + + Sbjct 123 QKGLLTLGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMI----RRRSLRT 178 Query 123 TVFSLIVVDEC 133 ++V+DE Sbjct 179 RAIKMLVLDEA 189 >sp|P38919|IF4A3_HUMAN Eukaryotic initiation factor 4A-III OS=Homo sapiens OX=9606 GN=EIF4A3 PE=1 SV=4 Length=411 Score = 112 bits (281), Expect = 2e-25, Method: Composition-based stats. Identities = 29/165 (18%), Positives = 65/165 (39%), Gaps = 19/165 (12%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K + L + + + + +IF T++ L +++ S Sbjct 264 KFDTLCDL----YDTLTITQAVIFCNTKRKVDWLTEKMREAN--------------FTVS 305 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 S M Q++++ ++++F+ G +L++T V GLD+P ++++ Y L N + Sbjct 306 SMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI 365 Query 470 GR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM 513 GR R + A + I + T +++ V + Sbjct 366 GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADL 410 Score = 44.0 bits (102), Expect = 0.003, Method: Composition-based stats. Identities = 19/131 (15%), Positives = 39/131 (30%), Gaps = 10/131 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTR---AAAYVAKRHLETVDGAKVVVLVNRVHLVTQH 63 Q I ++G+++I +G GKT + V + ++L L Q Sbjct 65 QQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI--QVRETQALILAPTRELAVQI 122 Query 64 GEEFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 + + D G L ++ T + + + Sbjct 123 QKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMI----RRRSLRT 178 Query 123 TVFSLIVVDEC 133 ++V+DE Sbjct 179 RAIKMLVLDEA 189 >sp|B7ZTW1|IF4A3_XENTR Eukaryotic initiation factor 4A-III OS=Xenopus tropicalis OX=8364 GN=eif4a3 PE=2 SV=1 Length=415 Score = 112 bits (281), Expect = 2e-25, Method: Composition-based stats. Identities = 29/165 (18%), Positives = 65/165 (39%), Gaps = 19/165 (12%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K + L + + + + +IF T++ L +++ S Sbjct 268 KFDTLCDL----YDTLTITQAVIFCNTKRKVDWLTEKMREAN--------------FTVS 309 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 S M Q++++ ++++F+ G +L++T V GLD+P ++++ Y L N + Sbjct 310 SMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI 369 Query 470 GR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM 513 GR R + A + I + T +++ V + Sbjct 370 GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADL 414 Score = 45.2 bits (105), Expect = 0.002, Method: Composition-based stats. Identities = 19/131 (15%), Positives = 39/131 (30%), Gaps = 10/131 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTR---AAAYVAKRHLETVDGAKVVVLVNRVHLVTQH 63 Q I ++G+++I +G GKT + V + ++L L Q Sbjct 69 QQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDI--QVRETQALILAPTRELAGQI 126 Query 64 GEEFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 + + D G L ++ T + + + Sbjct 127 QKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMI----RRRSLRT 182 Query 123 TVFSLIVVDEC 133 ++V+DE Sbjct 183 RAIKMLVLDEA 193 >sp|Q99MJ9|DDX50_MOUSE ATP-dependent RNA helicase DDX50 OS=Mus musculus OX=10090 GN=Ddx50 PE=2 SV=1 Length=734 Score = 115 bits (288), Expect = 2e-25, Method: Composition-based stats. Identities = 57/365 (16%), Positives = 130/365 (36%), Gaps = 54/365 (15%) Query 204 CPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVV 263 + + +Q+ K+ P +L ++ D ++ +G Y+ Q+ Sbjct 192 LIERLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQIN 251 Query 264 KLSEAAALAGLQEQRVYALHLRRYN------DALLIHDTVRAVDALAA--LQDFYHREHV 315 ++ + R+ HL+ +++ + + +D A ++D H + Sbjct 252 QIRNGIDILVGTPGRI-KDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYK 310 Query 316 TKTQILC----------------AERRLLALFD----------DRKNELAHLATHGPENP 349 T ++ A++ + + ++ + HLA + Sbjct 311 TDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQ 370 Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 + ++ +LQ S + R IIF T+++ + + I Sbjct 371 RPAVIGDVLQVY--SGSEGRAIIFCETKKNVTEMAM---------------NPHIKQNAQ 413 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q ++ ++ F++G+ +LVAT+VA GLDIP ++V++ + S + Sbjct 414 CLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRS 473 Query 470 GR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQ 527 GR RA ++ R R + +A T V + + +++ IR L Sbjct 474 GRTGRAGRTGICVCFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLAS 533 Query 528 AALTK 532 + Sbjct 534 VSYAA 538 Score = 60.2 bits (144), Expect = 5e-08, Method: Composition-based stats. Identities = 30/133 (23%), Positives = 57/133 (43%), Gaps = 12/133 (9%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVA------KRHLETVDGAKVVVLVNRVHL 59 Q + P EGK++I TG GKT + A + + ++ KV+VL L Sbjct 161 QVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKKSRSPKVLVLAPTREL 220 Query 60 VTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 Q ++F+ + + +V G ++ + D+L+ T ++ L S Sbjct 221 ANQVAKDFKDIT-RKLSVACFYGGTSYQSQINQIRNGIDILVGTPGRIKDHLQS----GR 275 Query 120 VELTVFSLIVVDE 132 ++L+ +V+DE Sbjct 276 LDLSKLRHVVLDE 288 >sp|B5DG42|IF4A3_SALSA Eukaryotic initiation factor 4A-III OS=Salmo salar OX=8030 GN=eif4a3 PE=2 SV=1 Length=406 Score = 112 bits (280), Expect = 2e-25, Method: Composition-based stats. Identities = 29/165 (18%), Positives = 65/165 (39%), Gaps = 19/165 (12%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K + L + + + + +IF T++ L +++ S Sbjct 259 KFDTLCDL----YDTLTITQAVIFCNTKRKVDWLTEKMREAN--------------FTVS 300 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 S M Q++++ ++++F+ G +L++T V GLD+P ++++ Y L N + Sbjct 301 SMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI 360 Query 470 GR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM 513 GR R + A + I + T +++ V + Sbjct 361 GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADL 405 Score = 45.2 bits (105), Expect = 0.002, Method: Composition-based stats. Identities = 19/131 (15%), Positives = 39/131 (30%), Gaps = 10/131 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTR---AAAYVAKRHLETVDGAKVVVLVNRVHLVTQH 63 Q I ++G+++I +G GKT + V + ++L L Q Sbjct 60 QQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDI--QVRETQALILAPTRELAGQI 117 Query 64 GEEFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 + + D G L ++ T + + + Sbjct 118 QKVLLALGDYMNVQCHSCIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMI----RRRSLRT 173 Query 123 TVFSLIVVDEC 133 ++V+DE Sbjct 174 RAIKMLVLDEA 184 >sp|A7EM88|FAL1_SCLS1 ATP-dependent RNA helicase fal1 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 GN=fal1 PE=3 SV=1 Length=399 Score = 112 bits (279), Expect = 3e-25, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 58/147 (39%), Gaps = 16/147 (11%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K E L + + + +IF TR+ L +++ S Sbjct 247 KEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREAN--------------FTVS 292 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 S M Q+++ ++Q F+ G +L++T V G+D+ ++V+ Y L N + + Sbjct 293 SMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPVNRENYIHRI 352 Query 470 GR-ARADQSVYAF-VATEGSRELKREL 494 GR R + A T + R++ Sbjct 353 GRSGRFGRKGVAINFVTSEDVRILRDI 379 Score = 42.9 bits (99), Expect = 0.009, Method: Composition-based stats. Identities = 20/120 (17%), Positives = 40/120 (33%), Gaps = 6/120 (5%) Query 16 EGKNIIIWLPTGAGKTRAAAYVAKRHLET-VDGAKVVVLVNRVHLVTQHGEEFRRMLDGR 74 +G++ I +G GKT + + ++T V + +VL L TQ + D Sbjct 61 KGRDTIAQAQSGTGKTATFSISMLQVIDTAVRETQALVLSPTRELATQIQSVVMALGDYM 120 Query 75 WTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC 133 G L ++ T + + ++ ++V+DE Sbjct 121 NVQCHACIGGTNVGEDIRKLDYGQHIVSGTPGRVADMI----RRRNLRTRHIKMLVLDEA 176 >sp|Q6FW42|DRS1_CANGA ATP-dependent RNA helicase DRS1 OS=Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DRS1 PE=3 SV=1 Length=725 Score = 115 bits (287), Expect = 3e-25, Method: Composition-based stats. Identities = 37/236 (16%), Positives = 87/236 (37%), Gaps = 19/236 (8%) Query 336 NELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQT 395 E + P L L R+ + R ++F + AH L + L Sbjct 426 QEFVRIRKRDHLKP---SLLFNLIRKLDPNGQKRIVVFVARKDMAHKLRIILG------- 475 Query 396 VDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVR 455 L+G + +TQ + + + KF+ + +L+ T +A GLDIP VV+ Sbjct 476 -------LLGMAVAELHGSLTQEQRLDSVNKFKSLQVPVLICTDLASRGLDIPKIEVVIN 528 Query 456 YGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMD 514 Y + + + GR ARA + + G +R ++ +A+ + + + + + Sbjct 529 YDMPKSYEIYLHRVGRTARAGREGRSITFV-GEASAERSIVKDAIRGVNDSEIPGSKAVG 587 Query 515 QAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQLLCINCMVAVGHGSDLR 570 + ++ + + ++++ + ++ + H +++ Sbjct 588 RNVDWNQVEETNKIVENMDQTVQDILVEEKEEKEILRAEMELKKGENLLKHKDEIQ 643 Score = 54.8 bits (130), Expect = 2e-06, Method: Composition-based stats. Identities = 28/128 (22%), Positives = 46/128 (36%), Gaps = 9/128 (7%) Query 14 ALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA----KVVVLVNRVHLVTQHGEEFRR 69 AL GK+II TG+GKT A L +V+VL L Q + ++ Sbjct 240 ALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAKVASTRVIVLTPTRELAIQVADVGKK 299 Query 70 MLDGRWTVTT--LSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSL 127 + +T G + R L D++I T + + + + Sbjct 300 IGQFVSNLTFGLAVGGLNLRQQEQMLKTRPDIVIATPGRFIDHIRNS---ASFNVDSVEV 356 Query 128 IVVDECHH 135 +V+DE Sbjct 357 LVIDEADR 364 >sp|O25029|RHPA_HELPY DEAD-box ATP-dependent RNA helicase RhpA OS=Helicobacter pylori (strain ATCC 700392 / 26695) OX=85962 GN=rhpA PE=1 SV=1 Length=492 Score = 113 bits (283), Expect = 3e-25, Method: Composition-based stats. Identities = 37/170 (22%), Positives = 71/170 (42%), Gaps = 17/170 (10%) Query 356 KILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHM 415 + + R + + I+FTRT++ A L +L + +++ M Sbjct 246 EAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKN--------------YKSTALHGDM 291 Query 416 TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA 474 QRD++ I F+ ++LVAT VA GLDI + V Y L N S + GR RA Sbjct 292 DQRDRRSSIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRA 351 Query 475 DQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD 524 + A + + + +++ +E + + +++ + + D Sbjct 352 GKKGMAITLVTPLEYKELLRMQKEIDSEIE--LFEIPTINENQIIKTLHD 399 Score = 59.0 bits (141), Expect = 9e-08, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 52/127 (41%), Gaps = 5/127 (4%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEE 66 Q + I L+G+++I TG GKT A A +L+ + +V+ L Q +E Sbjct 47 QEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNLKNNHTIEALVITPTRELAMQISDE 106 Query 67 FRRMLDGRWTVTT-LSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF 125 ++ T T + G + + + ++I T L L + + V Sbjct 107 IFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHKFVP---- 162 Query 126 SLIVVDE 132 ++V+DE Sbjct 163 KVVVLDE 169 >sp|O42226|I4A3B_XENLA Eukaryotic initiation factor 4A-III-B OS=Xenopus laevis OX=8355 GN=eif4a3-b PE=2 SV=1 Length=414 Score = 112 bits (280), Expect = 3e-25, Method: Composition-based stats. Identities = 29/165 (18%), Positives = 65/165 (39%), Gaps = 19/165 (12%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K + L + + + + +IF T++ L +++ S Sbjct 267 KFDTLCDL----YDTLTITQAVIFCNTKRKVDWLTEKMREAN--------------FTVS 308 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 S M Q++++ ++++F+ G +L++T V GLD+P ++++ Y L N + Sbjct 309 SMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI 368 Query 470 GR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM 513 GR R + A + I + T +++ V + Sbjct 369 GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADL 413 Score = 45.9 bits (107), Expect = 8e-04, Method: Composition-based stats. Identities = 18/131 (14%), Positives = 40/131 (31%), Gaps = 10/131 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTR---AAAYVAKRHLETVDGAKVVVLVNRVHLVTQH 63 Q + I ++G+++I +G GKT + + + ++L L Q Sbjct 68 QQKAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDI--QIRETQALILAPTKELARQI 125 Query 64 GEEFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 + + D G L ++ T + + + Sbjct 126 QKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMI----RRRSLRT 181 Query 123 TVFSLIVVDEC 133 ++V+DE Sbjct 182 RAIKMLVLDEA 192 >sp|Q55BR9|DDX49_DICDI Probable ATP-dependent RNA helicase ddx49 OS=Dictyostelium discoideum OX=44689 GN=ddx49 PE=3 SV=1 Length=508 Score = 113 bits (283), Expect = 3e-25, Method: Composition-based stats. Identities = 50/267 (19%), Positives = 93/267 (35%), Gaps = 42/267 (16%) Query 307 QDFYHREHVTKTQILCAERRLLALFD----DRKNELAHLATHGP----ENPKLEMLEKIL 358 +DF + E+R LF +L +A + P +N K + ++ + Sbjct 162 EDFELEIASILEHLPPPEKRQTLLFSATMTKNLTKLDSIALNKPFIFEDNSKYDTVDTLK 221 Query 359 QRQFSSSNSPR---------------GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLL 403 Q + I+F + ++ L + Sbjct 222 QEYIYMPAPTKDCYLVYILKKHEGSSAIVFVNNCYAVEAVKGMLNKLDIPSV-------- 273 Query 404 IGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI 463 S + + Q+ + ++ F+ G + +LVAT VA GLDIP +V+ Y L + Sbjct 274 ------SLHSFLDQKSRLAALKTFKSGKVKVLVATDVASRGLDIPDVQIVINYKLSNSSK 327 Query 464 SMVQARGR-ARADQSVYAF-VATEGSRELKR---ELINEALETLMEQAVAAVQKMDQAEY 518 + GR AR +S A T L + E+I + LE + + +A Sbjct 328 DYIHRVGRTARFGRSGRAISFITPHDVSLIKGIEEIIKKQLELYKTDDDEVFRHLKEAST 387 Query 519 QAKIRDLQQAALTKRAAQAAQRENQRQ 545 KI ++ + Q +R + + Sbjct 388 ARKIVEIHLDEIEFGVKQKERRTERNE 414 Score = 55.6 bits (132), Expect = 1e-06, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 50/136 (37%), Gaps = 5/136 (4%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE 65 Q I L+G++II TG+GKT + A L V+L L Q GE Sbjct 31 QANTIPEILKGRDIIASAKTGSGKTASFAIPILNQLSEDPYGVFAVILTPTRELAVQIGE 90 Query 66 EFRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 +F + + + G + L + +++ T L L + + + L Sbjct 91 QFNAIGAPMNVNCSVVIGGIDNVTQALILDKRPHIIVATPGRLASHLNNGLK---IALKF 147 Query 125 FSLIVVDECHHTHKDT 140 +V+DE + Sbjct 148 CKFLVLDEADRLLGED 163 >sp|B5FZY7|IF4A3_TAEGU Eukaryotic initiation factor 4A-III OS=Taeniopygia guttata OX=59729 GN=EIF4A3 PE=2 SV=1 Length=410 Score = 112 bits (280), Expect = 3e-25, Method: Composition-based stats. Identities = 29/165 (18%), Positives = 65/165 (39%), Gaps = 19/165 (12%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K + L + + + + +IF T++ L +++ S Sbjct 263 KFDTLCDL----YDTLTITQAVIFCNTKRKVDWLTEKMREAN--------------FTVS 304 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 S M Q++++ ++++F+ G +L++T V GLD+P ++++ Y L N + Sbjct 305 SMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI 364 Query 470 GR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM 513 GR R + A + I + T +++ V + Sbjct 365 GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADL 409 Score = 43.6 bits (101), Expect = 0.004, Method: Composition-based stats. Identities = 19/131 (15%), Positives = 39/131 (30%), Gaps = 10/131 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTR---AAAYVAKRHLETVDGAKVVVLVNRVHLVTQH 63 Q I ++G+++I +G GKT + V + ++L L Q Sbjct 64 QQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI--QVRETQALILAPTRELAVQI 121 Query 64 GEEFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 + + D G L ++ T + + + Sbjct 122 QKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMI----RRRSLRT 177 Query 123 TVFSLIVVDEC 133 ++V+DE Sbjct 178 RAIKMLVLDEA 188 >sp|Q5BCU6|PRP28_EMENI Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=prp28 PE=3 SV=2 Length=782 Score = 115 bits (287), Expect = 3e-25, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 78/182 (43%), Gaps = 19/182 (10%) Query 338 LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD 397 + E+ + + L +IL S P I+F +++ ++ ++Q Sbjct 595 EQRVEMIAGEDKRKKRLGEILS---SGDFRPPIIVFVNIKRNCDAIAREIKQW------- 644 Query 398 IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG 457 G + + TQ ++ + ++G+ ++LVAT +A G+D+P ++V+ + Sbjct 645 -------GFSSVTLHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVINFN 697 Query 458 LLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQ 515 + T+ S GR RA +S A ++ +L +++ + + ++K + Sbjct 698 MATSIESYTHRIGRTGRAGKSGVAITFLGNEDADVMYDLKQMLIKSPISRVPEELRKHEA 757 Query 516 AE 517 A+ Sbjct 758 AQ 759 Score = 57.5 bits (137), Expect = 3e-07, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 64/190 (34%), Gaps = 33/190 (17%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT---------RAAAYVAKRHLETV--DGAKVVVLVN 55 Q I A++ +++I TG+GKT A E DG +VL Sbjct 373 QRAAIPIAMQSRDLIGVAVTGSGKTAAFLLPLLCYIAELPRIDEFEWRKNDGPYAIVLAP 432 Query 56 RVHLVTQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP 114 L Q E ++ + + V ++ G L +++I T L + Sbjct 433 TRELAQQIEIEAKKFTEPLGFNVVSIVGGHSFEEQAYSLRNGAEIIIATPGRLVDCI--- 489 Query 115 EEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGG 174 E + L+ +++DE + L +P+ ++L A P T Sbjct 490 -ERRMLVLSQCCYVIMDEADR---------------MIDLGFEEPVNKILD--ALPVTNE 531 Query 175 ASKLDGAINH 184 + A + Sbjct 532 KPDTEEAEDS 541 >sp|Q5ZM36|IF4A3_CHICK Eukaryotic initiation factor 4A-III OS=Gallus gallus OX=9031 GN=EIF4A3 PE=2 SV=1 Length=412 Score = 112 bits (280), Expect = 3e-25, Method: Composition-based stats. Identities = 29/165 (18%), Positives = 65/165 (39%), Gaps = 19/165 (12%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K + L + + + + +IF T++ L +++ S Sbjct 265 KFDTLCDL----YDTLTITQAVIFCNTKRKVDWLTEKMREAN--------------FTVS 306 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 S M Q++++ ++++F+ G +L++T V GLD+P ++++ Y L N + Sbjct 307 SMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI 366 Query 470 GR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM 513 GR R + A + I + T +++ V + Sbjct 367 GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADL 411 Score = 43.6 bits (101), Expect = 0.004, Method: Composition-based stats. Identities = 19/131 (15%), Positives = 39/131 (30%), Gaps = 10/131 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTR---AAAYVAKRHLETVDGAKVVVLVNRVHLVTQH 63 Q I ++G+++I +G GKT + V + ++L L Q Sbjct 66 QQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI--QVRETQALILAPTRELAVQI 123 Query 64 GEEFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 + + D G L ++ T + + + Sbjct 124 QKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMI----RRRSLRT 179 Query 123 TVFSLIVVDEC 133 ++V+DE Sbjct 180 RAIKMLVLDEA 190 >sp|Q9P735|FAL1_NEUCR ATP-dependent RNA helicase fal-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=fal-1 PE=3 SV=2 Length=400 Score = 112 bits (279), Expect = 3e-25, Method: Composition-based stats. Identities = 29/147 (20%), Positives = 59/147 (40%), Gaps = 16/147 (11%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K + L + + + +IF TR+ L +++ S Sbjct 248 KEDWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREAN--------------FTVS 293 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 S M Q+++ ++Q F+ G +L++T V G+D+ ++V+ Y L +N + + Sbjct 294 SMHGDMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRI 353 Query 470 GR-ARADQSVYAF-VATEGSRELKREL 494 GR R + A T + R++ Sbjct 354 GRSGRFGRKGVAINFVTSEDVRILRDI 380 Score = 44.0 bits (102), Expect = 0.004, Method: Composition-based stats. Identities = 21/120 (18%), Positives = 40/120 (33%), Gaps = 6/120 (5%) Query 16 EGKNIIIWLPTGAGKTRAAAYVAKRHLET-VDGAKVVVLVNRVHLVTQHGEEFRRMLDGR 74 +G++ I +G GKT + + ++T V + +VL L TQ + D Sbjct 62 KGRDTIAQAQSGTGKTATFSISMLQVIDTAVRETQALVLSPTRELATQIQSVVMALGDYM 121 Query 75 WTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC 133 G L ++ T + + H+ ++V+DE Sbjct 122 NVQCHACIGGTNVGEDIRKLDYGQHIVSGTPGRVADMI----RRRHLRTRHIKMLVLDEA 177 >sp|A4QU31|FAL1_PYRO7 ATP-dependent RNA helicase FAL1 OS=Pyricularia oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 GN=FAL1 PE=3 SV=1 Length=401 Score = 112 bits (279), Expect = 3e-25, Method: Composition-based stats. Identities = 29/147 (20%), Positives = 59/147 (40%), Gaps = 16/147 (11%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K + L + + + +IF TR+ L +++ S Sbjct 249 KEDWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREAN--------------FTVS 294 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 S M Q+++ ++Q F+ G +L++T V G+D+ ++V+ Y L +N + + Sbjct 295 SMHGDMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRI 354 Query 470 GR-ARADQSVYAF-VATEGSRELKREL 494 GR R + A T + R++ Sbjct 355 GRSGRFGRKGVAINFVTSEDVRILRDI 381 Score = 44.4 bits (103), Expect = 0.003, Method: Composition-based stats. Identities = 23/129 (18%), Positives = 43/129 (33%), Gaps = 6/129 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLET-VDGAKVVVLVNRVHLVTQHGE 65 Q I+ +G++ I +G GKT + + ++T V + +VL L TQ Sbjct 54 QSRAIVQVCKGRDTIAQAQSGTGKTATFSISMLQVIDTAVRETQALVLSPTRELATQIQS 113 Query 66 EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 + D G L ++ T + + H+ Sbjct 114 VVMALGDYMNVQCHACIGGTNVGEDIRKLDYGQHIVSGTPGRVADMI----RRRHLRTRH 169 Query 125 FSLIVVDEC 133 ++V+DE Sbjct 170 IKMLVLDEA 178 >sp|Q1E0Z3|DBP8_COCIM ATP-dependent RNA helicase DBP8 OS=Coccidioides immitis (strain RS) OX=246410 GN=DBP8 PE=3 SV=1 Length=536 Score = 113 bits (283), Expect = 3e-25, Method: Composition-based stats. Identities = 71/402 (18%), Positives = 126/402 (31%), Gaps = 46/402 (11%) Query 149 YLELKLQRAQPLP-QVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQL 207 + L R P + + +P A ++ + +L I PQ Sbjct 160 FAAPILHRWSEDPFGIFAVVLTPTRELALQIFEQFKAISA-PQSLKPVLITGGSEMRPQA 218 Query 208 QEHSQQPCKQYN---LCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVK 264 S +P + D + L L+ + G V Sbjct 219 IALSTRPHVVIATPGRLADHIKTSGQDTIYGLNRVRMVVLDEADRLLASGPGSMLPDVET 278 Query 265 LSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAE 324 A + ++ ++ + + AL R D L E+ T + Sbjct 279 CLSALPPSTSRQTLLFTATVTQEVRAL--KSMPRPKDRLPIFVTEISTENNTTIPPTLKQ 336 Query 325 RRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLL 384 L R+ L L + + K IIF ++A Sbjct 337 CYLQVPMTHREAFLHVLLSTDANSSK------------------PAIIFCNRTKTA---- 374 Query 385 LWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEG 444 + R +G +S + + Q ++ + +F+ LLVAT VA G Sbjct 375 ----------DLLDRLLRRLGHRVTSLHSLLPQSERTSNLARFRASAARLLVATDVAARG 424 Query 445 LDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLM 503 LDIP +VV + + N + GR ARA + A G R+++ L A+E + Sbjct 425 LDIPSVGLVVNFDVPRNPDDYIHRVGRTARAGREGEAITLV-GQRDVQLVL---AIEERV 480 Query 504 EQAVAAVQKMDQAEYQAKIRD--LQQAALTKRAAQAAQRENQ 543 + + A ++ + +R L+ KR A E + Sbjct 481 GRQMVAWEEEGVSIEGRIVRGGLLKDVGGAKREALGEIEEGR 522 Score = 57.1 bits (136), Expect = 3e-07, Method: Composition-based stats. Identities = 42/212 (20%), Positives = 76/212 (36%), Gaps = 7/212 (3%) Query 15 LEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDG 73 L+G++ I TG+GKT A AA + R E G VVL L Q E+F+ + Sbjct 141 LKGRDCIGGSRTGSGKTVAFAAPILHRWSEDPFGIFAVVLTPTRELALQIFEQFKAISAP 200 Query 74 RW-TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDE 132 + ++G R L+ ++I T L + + ++ L ++V+DE Sbjct 201 QSLKPVLITGGSEMRPQAIALSTRPHVVIATPGRLADHIKTSGQDTIYGLNRVRMVVLDE 260 Query 133 CHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANL 192 +++ L Q L TA+ ++ A+ + + L Sbjct 261 ADRLLASGPGSMLPDVETCLSALPPSTSRQTLLFTAT-----VTQEVRALKSMPRPKDRL 315 Query 193 DTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRR 224 + + +Q Q + HR Sbjct 316 PIFVTEISTENNTTIPPTLKQCYLQVPMTHRE 347 >sp|Q4P184|FAL1_USTMA ATP-dependent RNA helicase FAL1 OS=Ustilago maydis (strain 521 / FGSC 9021) OX=237631 GN=FAL1 PE=3 SV=1 Length=397 Score = 111 bits (278), Expect = 3e-25, Method: Composition-based stats. Identities = 34/165 (21%), Positives = 65/165 (39%), Gaps = 15/165 (9%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K E L + + + +IF TR+ L +++ S Sbjct 246 KEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLSAKMKENN--------------FQVS 291 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 S M Q+++ EV+ +F+ G+ +L+ T V G+DI + ++V+ Y L TN + + Sbjct 292 SMHGEMQQKERDEVMAEFRQGSSRVLITTDVWARGIDIANISLVINYDLPTNRENYIHRI 351 Query 470 GR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM 513 GR R + A I + T +++ ++ M Sbjct 352 GRSGRFGRKGVAINFVTVDDVRTLRDIEQFYSTQIDEMPVKLEDM 396 Score = 44.4 bits (103), Expect = 0.002, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 43/128 (34%), Gaps = 6/128 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETV-DGAKVVVLVNRVHLVTQHGE 65 Q I+P + G+++I +G GKT + + ++T + +VL L Q Sbjct 51 QQRAILPIIRGRDVIAQAQSGTGKTATFSISMLQSIDTTLRETQALVLSPTRELAIQIQS 110 Query 66 EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 + D G L ++ T + + H+ Sbjct 111 VVLALGDYLNVQCHACIGGTSVGEDIRKLDYGQHIVSGTPGRVYDMI----RRRHLRTKN 166 Query 125 FSLIVVDE 132 ++++DE Sbjct 167 IKMLILDE 174 >sp|Q9BQ39|DDX50_HUMAN ATP-dependent RNA helicase DDX50 OS=Homo sapiens OX=9606 GN=DDX50 PE=1 SV=1 Length=737 Score = 114 bits (286), Expect = 3e-25, Method: Composition-based stats. Identities = 57/365 (16%), Positives = 129/365 (35%), Gaps = 54/365 (15%) Query 204 CPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVV 263 + + +Q+ K+ P +L ++ D ++ +G Y+ Q+ Sbjct 195 LIERLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQIN 254 Query 264 KLSEAAALAGLQEQRVYALHLRRYN------DALLIHDTVRAVDALAA--LQDFYHREHV 315 + + R+ HL+ +++ + + +D A ++D H + Sbjct 255 HIRNGIDILVGTPGRI-KDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYK 313 Query 316 TKTQILC----------------AERRLLALFD----------DRKNELAHLATHGPENP 349 T ++ A++ + + ++ + HLA + Sbjct 314 TDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQ 373 Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 + ++ +LQ S + R IIF T+++ + + I Sbjct 374 RPAVIGDVLQVY--SGSEGRAIIFCETKKNVTEMAM---------------NPHIKQNAQ 416 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q ++ ++ F++G+ +LVAT+VA GLDIP ++V++ + S + Sbjct 417 CLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRS 476 Query 470 GR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQ 527 GR RA ++ R R + +A T V + + +++ IR L Sbjct 477 GRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLAS 536 Query 528 AALTK 532 + Sbjct 537 VSYAA 541 Score = 60.6 bits (145), Expect = 3e-08, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 58/133 (44%), Gaps = 12/133 (9%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVA------KRHLETVDGAKVVVLVNRVHL 59 Q + P EGK++I TG GKT + A + + ++ KV+VL L Sbjct 164 QVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKKSRSPKVLVLAPTREL 223 Query 60 VTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 Q ++F+ + + +V G ++ H+ D+L+ T ++ L S Sbjct 224 ANQVAKDFKDIT-RKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQS----GR 278 Query 120 VELTVFSLIVVDE 132 ++L+ +V+DE Sbjct 279 LDLSKLRHVVLDE 291 >sp|Q2UKX3|DBP8_ASPOR ATP-dependent RNA helicase dbp8 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=dbp8 PE=3 SV=1 Length=443 Score = 112 bits (280), Expect = 4e-25, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 74/199 (37%), Gaps = 17/199 (9%) Query 352 EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ 411 E +L +S P IIF ++A L L++ +S Sbjct 254 EAFLHVLLSTERNSTKP-AIIFCNHTKTADLLERMLRRLS--------------HRVTSL 298 Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 + + Q ++ + +F+ +LVAT VA GLDIP ++V+ + + N V GR Sbjct 299 HSLLPQSERNSNLARFRASAARILVATDVASRGLDIPSVSLVINFDVPRNPDDYVHRVGR 358 Query 472 -ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAA 529 ARA + A + + +L + + E + V + ++++ +A Sbjct 359 TARAGRHGEAVTLVGQRDVQLVLAIEERVERRMEEWSEEGVSIEGRVVRGGVLKEVGEAK 418 Query 530 LTKRAAQAAQRENQRQQFP 548 R+ ++ Sbjct 419 REASGEIEEGRDVLGRKRN 437 Score = 59.0 bits (141), Expect = 8e-08, Method: Composition-based stats. Identities = 29/123 (24%), Positives = 53/123 (43%), Gaps = 2/123 (2%) Query 15 LEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDG 73 L+G++ I TG+GKT A A + ++ + G VVL L Q E+ + + Sbjct 48 LKGRDCIGGSRTGSGKTIAFAVPILQKWAQDPFGIFAVVLTPTRELALQIYEQIKAISAP 107 Query 74 RWTVTTL-SGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDE 132 + L +G R+ L++ ++I T L + + E+ L ++V+DE Sbjct 108 QSMKPLLITGGTDMRSQALALSQRPHVVIATPGRLADHINTSGEDTVCGLKRVRMVVLDE 167 Query 133 CHH 135 Sbjct 168 ADR 170 >sp|Q4WPE9|PRP28_ASPFU Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293) OX=330879 GN=prp28 PE=3 SV=1 Length=796 Score = 114 bits (286), Expect = 4e-25, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 77/182 (42%), Gaps = 19/182 (10%) Query 338 LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD 397 + E+ + + L IL S P I+F +++ ++ ++Q Sbjct 608 EQRVEMIAGEDKRKKRLADILS---SGEFRPPIIVFVNIKRNCDAIAREIKQ-------- 656 Query 398 IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG 457 +G + + TQ ++ + ++G+ ++LVAT +A G+D+P ++VV + Sbjct 657 ------MGFSSVTLHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFN 710 Query 458 LLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQ 515 + + S GR RA +S A ++ +L +++ + + ++K + Sbjct 711 MANSIESYTHRIGRTGRAGKSGVAITFLGNEDADVMYDLKQMLMKSPISRVPEELRKHEA 770 Query 516 AE 517 A+ Sbjct 771 AQ 772 Score = 56.7 bits (135), Expect = 5e-07, Method: Composition-based stats. Identities = 29/141 (21%), Positives = 49/141 (35%), Gaps = 16/141 (11%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT---------RAAAYVAKRHLETV--DGAKVVVLVN 55 Q I AL+ +++I TG+GKT + E DG +VL Sbjct 391 QRAAIPIALQSRDLIGVAVTGSGKTASFLLPLLVYISELPRIDEFEWRKNDGPYAIVLAP 450 Query 56 RVHLVTQHGEEFRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP 114 L Q E R+ + V ++ G L +++I T L + Sbjct 451 TRELAQQIEIEARKFTQPLGFNVVSIVGGHSFEEQAYSLRNGAEIIIATPGRLVDCI--- 507 Query 115 EEEEHVELTVFSLIVVDECHH 135 E + L+ +++DE Sbjct 508 -ERRLLVLSQCCYVIMDEADR 527 >sp|Q0UAT0|FAL1_PHANO ATP-dependent RNA helicase FAL1 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) OX=321614 GN=FAL1 PE=3 SV=3 Length=374 Score = 111 bits (277), Expect = 4e-25, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 59/147 (40%), Gaps = 16/147 (11%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K E L + + + +IF TR+ L +++ S Sbjct 222 KEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREAN--------------FTVS 267 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 S M QR++ ++Q F+ +L++T V G+D+ ++V+ Y L +N + + Sbjct 268 SMHGDMPQRERDSIMQDFRQANSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRI 327 Query 470 GR-ARADQSVYAF-VATEGSRELKREL 494 GR R + A T+ + R++ Sbjct 328 GRSGRFGRKGVAINFVTQEDVRILRDI 354 >sp|A5DS77|DBP2_LODEL ATP-dependent RNA helicase DBP2 OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) OX=379508 GN=DBP2 PE=3 SV=1 Length=552 Score = 113 bits (283), Expect = 4e-25, Method: Composition-based stats. Identities = 37/179 (21%), Positives = 72/179 (40%), Gaps = 18/179 (10%) Query 347 ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA 406 E K ++L K L+ + SNS + ++F T+++ + +L+ G Sbjct 344 EYQKRDLLVKHLESALADSNS-KVLVFASTKRTCDEVTSYLRAD--------------GW 388 Query 407 GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV 466 + Q ++ V+++F+ G+ +++VAT VA G+D+ VV Y + N V Sbjct 389 PALAIHGDKEQHERDWVLKEFRQGSHSIMVATDVAARGIDVKGITHVVNYDMPGNIEDYV 448 Query 467 QAR--GRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIR 523 T+ ++L +L E + +Q D+ Y + IR Sbjct 449 HRIGRTGRGGATGTAISFFTDNEKKLGGDLCKIMREA-KQTIPPELQAYDRRSYGSHIR 506 Score = 51.0 bits (120), Expect = 3e-05, Method: Composition-based stats. Identities = 61/347 (18%), Positives = 118/347 (34%), Gaps = 44/347 (13%) Query 14 ALEGKNIIIWLPTGAGKTR------AAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEF 67 AL G++++ TG+GKT A+ L+ DG V+VL L Q E Sbjct 150 ALSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLLKRGDGPIVLVLAPTRELACQIQTEC 209 Query 68 RRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS 126 + R T + G LA ++ I T L L + + L + Sbjct 210 SKFGASSRIRNTCVYGGAPKGPQIRDLANGVEICIATPGRLIDMLEAGKTN----LKRVT 265 Query 127 LIVVDECHHTHKDTVYNVIMSQYLELKLQR----AQPLPQVLGLTAS-PGTGGASKLDGA 181 +V+DE + ++ E ++++ +P Q L +A+ P D Sbjct 266 YLVLDEA---------DRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVQNLARDYL 316 Query 182 INHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIH 241 N + +L+ + + E+ ++ +L + L+ + Sbjct 317 DNPIQVTIGSLELAASHTITQIVQVVTEYQKRDLLVKHLESALADSNSKVLVFASTKRTC 376 Query 242 DHLEMPELSRKFGT----------QMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDAL 291 D E+ R G Q V+K + + + V A + Sbjct 377 D--EVTSYLRADGWPALAIHGDKEQHERDWVLKEFRQGSHSIMVATDVAARGIDVKGITH 434 Query 292 LIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNEL 338 +++ D ++D+ HR + +T A ++ F D + +L Sbjct 435 VVN-----YDMPGNIEDYVHR--IGRTGRGGATGTAISFFTDNEKKL 474 >sp|B9XXL6|RHPA_HELP8 DEAD-box ATP-dependent RNA helicase RhpA OS=Helicobacter pylori (strain B128) OX=544406 GN=rhpA PE=1 SV=1 Length=492 Score = 112 bits (281), Expect = 4e-25, Method: Composition-based stats. Identities = 37/170 (22%), Positives = 71/170 (42%), Gaps = 17/170 (10%) Query 356 KILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHM 415 + + R + + I+FTRT++ A L +L + +++ M Sbjct 246 EAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKN--------------YKSTALHGDM 291 Query 416 TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA 474 QRD++ I F+ ++LVAT VA GLDI + V Y L N S + GR RA Sbjct 292 DQRDRRASIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRA 351 Query 475 DQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD 524 + A + + + +++ +E + + +++ + + D Sbjct 352 GKKGMAITLVTPLEYKELLRMQKEIDSEIE--LFEIPTINENQIIKTLHD 399 Score = 58.7 bits (140), Expect = 1e-07, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 52/127 (41%), Gaps = 5/127 (4%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEE 66 Q + I L+G+++I TG GKT A A +L+ + +V+ L Q +E Sbjct 47 QEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNLKNNHTIEALVITPTRELAMQISDE 106 Query 67 FRRMLDGRWTVTT-LSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF 125 ++ T T + G + + + ++I T L L + + V Sbjct 107 IFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHKFVP---- 162 Query 126 SLIVVDE 132 ++V+DE Sbjct 163 KVVVLDE 169 >sp|A3LNL1|PRP28_PICST Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) OX=322104 GN=PRP28 PE=3 SV=2 Length=482 Score = 112 bits (281), Expect = 4e-25, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 66/156 (42%), Gaps = 19/156 (12%) Query 347 ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA 406 ++ + + L +I+Q+ S IIF ++ L L L++ V I Sbjct 318 DSKRFDKLVRIIQQHSRESRQFSIIIFANYKRVCDLLSLELEKNGFRDNVVIHGS----- 372 Query 407 GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV 466 TQ +++ I F+ +L+AT VA G+D+P+ ++VV + + V Sbjct 373 --------KTQELREKAISSFRSHESRILIATDVAARGIDVPNVSLVVNFQMSRKFDEYV 424 Query 467 QARGR-ARADQSVYAFVATEGSR-----ELKRELIN 496 GR RA ++ + S +LK+ L+N Sbjct 425 HRIGRTGRAGNRGESYTFIDDSDSDVFIDLKKFLVN 460 Score = 49.0 bits (115), Expect = 1e-04, Method: Composition-based stats. Identities = 48/318 (15%), Positives = 100/318 (31%), Gaps = 47/318 (15%) Query 1 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVA---------KRHLE-------T 44 +E Q I AL ++++ TG+GKT A + K +LE Sbjct 78 LEPTPIQRAAIPLALNQRDVVGIAETGSGKTL-AFLIPLLSYILNTDKNYLEYEHQQEQN 136 Query 45 VDGAKVVVLVNRVHLVTQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICT 103 + ++L L Q +E ++ D V ++ G + +++ T Sbjct 137 YNKPLGLILAPTRELAQQITKEAQKFGDRLGLNVVSIIGGHQYEETVHSIRTGVHVVVAT 196 Query 104 AELLQMALTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQV 163 L +L E + L +++DE +I + + +P Sbjct 197 PGRLVDSL----ERNIIGLDKCYYLIMDEADR--------MIDMGFEKALQSILSYVPS- 243 Query 164 LGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHR 223 S +D I H+ + + T I P + +P Y Sbjct 244 -------TDRLNSTIDSMIFHIKKRITLMFTATISPPIEKI--TKNFLIKPGYLYIGG-- 292 Query 224 RSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALH 283 G+ L ++ S F ++ +++ V + + + + ++A + Sbjct 293 -----AGEALDHIVQNFEYLGSATGGSEDFDSKRFDKLVRIIQQHSRESRQFSIIIFANY 347 Query 284 LRRYNDALLIHDTVRAVD 301 R + L + D Sbjct 348 KRVCDLLSLELEKNGFRD 365 >sp|O01836|GLH3_CAEEL ATP-dependent RNA helicase glh-3 OS=Caenorhabditis elegans OX=6239 GN=glh-3 PE=1 SV=1 Length=720 Score = 114 bits (285), Expect = 5e-25, Method: Composition-based stats. Identities = 44/305 (14%), Positives = 101/305 (33%), Gaps = 64/305 (21%) Query 269 AALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLL 328 + E L RY L++ + R +D++ + + + + ++R Sbjct 434 GRVKHFCEDGAIKLDKCRY---LVLDEADRMIDSMGFGPEI--EQIINYKNMPKNDKRQT 488 Query 329 ALFDD----------------------------RKNELAHLATHGPENPKLEMLEKIL-- 358 +F + K++ L K+L Sbjct 489 MMFSATFPSSVQEAARKLLREDYTMITIDKIGAANKCVIQEFELCDRTSKVDKLLKLLGI 548 Query 359 -QRQFSSSNSP-----RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQS 412 +++ + + I+F ++ A +L + Q Sbjct 549 DIDTYTTEKNSDVFVKKTIVFVAQQKMADTLASIMSAAQVPAIT--------------IH 594 Query 413 THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR- 471 Q+++ ++ F+ G +L+AT+V E GLDI + V+ Y + N + GR Sbjct 595 GAREQKERSAALKLFRSGAKPVLIATAVVERGLDIKGVDHVINYDMPNNIDDYIHRIGRT 654 Query 472 ARADQSVYA--FVATEGSRELKRELI------NEALETLMEQAVAAVQKMDQAEYQAKIR 523 R S A F++ ++ +L+ + + + M++A ++ E Sbjct 655 GRVGNSGRATSFISLADDVQILPQLVRTLADAEQVVPSWMKEAAGGTSNPNKFEKSIDTE 714 Query 524 DLQQA 528 + ++A Sbjct 715 EPEEA 719 Score = 51.3 bits (121), Expect = 3e-05, Method: Composition-based stats. Identities = 43/286 (15%), Positives = 92/286 (32%), Gaps = 22/286 (8%) Query 16 EGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA------------KVVVLVNRVHLVTQH 63 +GK+I+ TG+GKT AA++ + + ++L L Q Sbjct 334 DGKDILACAQTGSGKT--AAFLLPIMSRLILEKDLNYGAEGGCYPRCIILTPTRELADQI 391 Query 64 GEEFRRMLDGRW-TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 E R+ + + G + + + +++ T ++ E+ ++L Sbjct 392 YNEGRKFSYQSVMEIKPVYGGINVGYNKSQIMKGCTIIVGTIGRVKH----FCEDGAIKL 447 Query 123 TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAI 182 +V+DE + + Q + K Q + +A+ +S + A Sbjct 448 DKCRYLVLDEADRMIDSMGFGPEIEQIINYKNMPKNDKRQTMMFSAT---FPSSVQEAAR 504 Query 183 NHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHD 242 + + + I + C Q E + K L D +K D Sbjct 505 KLLREDYTMITIDKIGAANKCVIQEFELCDRTSKVDKLLKLLGIDIDTYTTEKNSDVFVK 564 Query 243 HLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN 288 + +K + A + G +EQ+ + L+ + Sbjct 565 KTIVFVAQQKMADTLASIMSAAQVPAITIHGAREQKERSAALKLFR 610 >sp|Q4WXW1|DBP8_ASPFU ATP-dependent RNA helicase dbp8 OS=Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293) OX=330879 GN=dbp8 PE=3 SV=1 Length=526 Score = 113 bits (282), Expect = 5e-25, Method: Composition-based stats. Identities = 45/209 (22%), Positives = 80/209 (38%), Gaps = 23/209 (11%) Query 338 LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD 397 L P + L +L + S I+F ++A L L++ Sbjct 324 LKQTYLKVPLTHREAFLHVLLST--EGNASKPAIVFCNHTKTADLLERMLRRLS------ 375 Query 398 IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG 457 +S + + Q ++ + +F+ +LVAT VA GLDIP ++V+ Y Sbjct 376 --------HRVTSLHSLLPQSERNANLARFRASAARILVATDVASRGLDIPTVSLVINYD 427 Query 458 LLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQA 516 + N V GR ARA + A G R+++ L A+E + + + + + Sbjct 428 VPRNPDDYVHRVGRTARAGRRGEAVTLV-GQRDVQLVL---AIEERVGRQMEEWSEEGVS 483 Query 517 EYQAKIRD--LQQAALTKRAAQAAQRENQ 543 +R L++ KR A E + Sbjct 484 IEGRLVRTGALKEVGEAKREAMVEIDEGR 512 Score = 55.6 bits (132), Expect = 1e-06, Method: Composition-based stats. Identities = 31/130 (24%), Positives = 50/130 (38%), Gaps = 4/130 (3%) Query 15 LEGKNIIIWLPTGAGKTRAAAYV--AKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLD 72 L+G++ I TG+GKT A V ++ E G VVL L Q E+ + + Sbjct 131 LKGRDCIGGSRTGSGKT-IAFSVPMLQKWAEDPFGIFGVVLTPTRELALQIFEQIKAISA 189 Query 73 GRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVD 131 + ++G R LA ++I T L + S E+ L ++V+D Sbjct 190 PQSMKPVLITGGTDMRPQAIALAGRPHVVIATPGRLADHIKSSGEDTVCGLKRVRMVVLD 249 Query 132 ECHHTHKDTV 141 E Sbjct 250 EADRLLASGP 259 >sp|Q4IAA0|FAL1_GIBZE ATP-dependent RNA helicase FAL1 OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=FAL1 PE=3 SV=1 Length=401 Score = 111 bits (277), Expect = 5e-25, Method: Composition-based stats. Identities = 29/147 (20%), Positives = 59/147 (40%), Gaps = 16/147 (11%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K + L + + + +IF TR+ L +++ S Sbjct 249 KEDWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREAN--------------FTVS 294 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 S M Q+++ ++Q F+ G +L++T V G+D+ ++V+ Y L +N + + Sbjct 295 SMHGDMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRI 354 Query 470 GR-ARADQSVYAF-VATEGSRELKREL 494 GR R + A T + R++ Sbjct 355 GRSGRFGRKGVAINFVTTEDVRILRDI 381 Score = 44.4 bits (103), Expect = 0.003, Method: Composition-based stats. Identities = 23/129 (18%), Positives = 43/129 (33%), Gaps = 6/129 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLET-VDGAKVVVLVNRVHLVTQHGE 65 Q I+ +G++ I +G GKT + + ++T V + +VL L TQ Sbjct 54 QSRAIVQVCKGRDTIAQAQSGTGKTATFSISMLQVIDTAVRETQALVLSPTRELATQIQS 113 Query 66 EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 + D G L ++ T + + H+ Sbjct 114 VVMALGDYMNVQCHACIGGTNVGEDIRKLDYGQHIVSGTPGRVADMI----RRRHLRTRH 169 Query 125 FSLIVVDEC 133 ++V+DE Sbjct 170 IKMLVLDEA 178 >sp|A1CX72|PRP28_NEOFI Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=prp28 PE=3 SV=1 Length=796 Score = 114 bits (285), Expect = 5e-25, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 77/182 (42%), Gaps = 19/182 (10%) Query 338 LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD 397 + E+ + + L IL S P I+F +++ ++ ++Q Sbjct 608 EQRVEMIAGEDKRKKRLADILS---SGEFRPPIIVFVNIKRNCDAIAREIKQ-------- 656 Query 398 IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG 457 +G + + TQ ++ + ++G+ ++LVAT +A G+D+P ++VV + Sbjct 657 ------MGFSSVTLHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFN 710 Query 458 LLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQ 515 + + S GR RA +S A ++ +L +++ + + ++K + Sbjct 711 MANSIESYTHRIGRTGRAGKSGVAITFLGNEDADVMYDLKQMLMKSPISRVPEELRKHEA 770 Query 516 AE 517 A+ Sbjct 771 AQ 772 Score = 56.7 bits (135), Expect = 6e-07, Method: Composition-based stats. Identities = 29/141 (21%), Positives = 49/141 (35%), Gaps = 16/141 (11%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT---------RAAAYVAKRHLETV--DGAKVVVLVN 55 Q I AL+ +++I TG+GKT + E DG +VL Sbjct 391 QRAAIPIALQSRDLIGVAVTGSGKTASFLLPLLVYISELPRIDEFEWRKNDGPYAIVLAP 450 Query 56 RVHLVTQHGEEFRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP 114 L Q E R+ + V ++ G L +++I T L + Sbjct 451 TRELAQQIEIEARKFTQPLGFNVVSIVGGHSFEEQAYSLRNGAEIIIATPGRLVDCI--- 507 Query 115 EEEEHVELTVFSLIVVDECHH 135 E + L+ +++DE Sbjct 508 -ERRLLVLSQCCYVIMDEADR 527 >sp|Q86XP3|DDX42_HUMAN ATP-dependent RNA helicase DDX42 OS=Homo sapiens OX=9606 GN=DDX42 PE=1 SV=1 Length=938 Score = 114 bits (286), Expect = 5e-25, Method: Composition-based stats. Identities = 57/301 (19%), Positives = 102/301 (34%), Gaps = 55/301 (18%) Query 234 KKLMDQIHDHLE------MPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRY 287 ++L QIH + +G +Q L E A + R+ ++ Sbjct 336 RELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKA 395 Query 288 -----NDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLL--ALFDDRKNELAH 340 L+ + R D F ++ + + + LL A F + +LA Sbjct 396 TNLQRVSYLVFDEADRMFDM-----GFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLAR 450 Query 341 LATHGPE----------NPKLEMLEKIL-----------QRQFSSSNSPRGIIFTRTRQS 379 P N + + +IL +R ++S ++F + + Sbjct 451 DILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKAN 510 Query 380 AHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATS 439 A L L+Q+ G M Q ++ +VI F+ + +LVAT Sbjct 511 AEELANNLKQE--------------GHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATD 556 Query 440 VAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINE 497 VA GLDIP V+ Y + + + GR RA + A+ + T +L+ Sbjct 557 VAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRN 616 Query 498 A 498 Sbjct 617 L 617 Score = 63.3 bits (152), Expect = 6e-09, Method: Composition-based stats. Identities = 32/138 (23%), Positives = 51/138 (37%), Gaps = 15/138 (11%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT--RAAAYVA----KRHLETVDGAKVVVLVNRVHLV 60 Q + + AL G+++I TG+GKT + ++ LE DG V++ L Sbjct 280 QCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELC 339 Query 61 TQHGEEFRRMLDG---RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE 117 Q E +R R G M +A L ++++CT L + Sbjct 340 QQIHAECKRFGKAYNLRSVAVYGGGSMWEQA--KALQEGAEIVVCTPGRLIDHVKKKATN 397 Query 118 EHVELTVFSLIVVDECHH 135 L S +V DE Sbjct 398 ----LQRVSYLVFDEADR 411 >sp|Q6CEB8|DRS1_YARLI ATP-dependent RNA helicase DRS1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DRS1 PE=3 SV=1 Length=753 Score = 114 bits (285), Expect = 5e-25, Method: Composition-based stats. Identities = 46/208 (22%), Positives = 78/208 (38%), Gaps = 25/208 (12%) Query 339 AHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI 398 + ++ K +L IL++ R IIF +++AH L + L Sbjct 473 EFVRIRKRDHLKPALLASILKKM---DKEQRTIIFVARKETAHRLRIMLG---------- 519 Query 399 RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL 458 L+G ++Q + + I F+ + +LV T +A GLDIP VV Y + Sbjct 520 ----LLGVRIGELHGALSQEQRLQSITAFKKLEVPILVCTDLASRGLDIPKIECVVNYDM 575 Query 459 LTNEISMVQARGR-ARADQSVYAFVA---TEGSRELKRELINEALETLMEQAVAAVQKMD 514 + GR ARA + + R + RE I E+ +AV Sbjct 576 PQTHAVYLHRVGRTARAGREGRSITLVGEAAADRAIVREAIKSVSESKQGKAVGRNVDWP 635 Query 515 Q-AEYQAKIR---DLQQAALTKRAAQAA 538 + + +KI D+ L + + A Sbjct 636 EVEKLYSKIEEKGDIVNEILAEEKEEKA 663 Score = 51.0 bits (120), Expect = 3e-05, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 47/135 (35%), Gaps = 9/135 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA----KVVVLVNRVHLVTQ 62 Q I AL GK+++ TG+GKT A L KVVVL L Q Sbjct 279 QSRTIPIALMGKDLVAGAVTGSGKTAAYIIPVLERLLYKSSKVAATKVVVLTPTRELSIQ 338 Query 63 HGEEFRRMLDGRWTV--TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 + +++ V G + R L +++I T + + Sbjct 339 VADVGKKLAQYVSGVRFGLAVGGLNLRVQEQELKTRPEVVIATPGRFIDHVRNSPS---F 395 Query 121 ELTVFSLIVVDECHH 135 + ++V+DE Sbjct 396 NVDDVEILVIDEADR 410 >sp|A7EGG4|PRP28_SCLS1 Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 GN=prp28 PE=3 SV=1 Length=816 Score = 114 bits (285), Expect = 5e-25, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 79/191 (41%), Gaps = 19/191 (10%) Query 332 DDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQ 391 + + + E+ + + L +IL S P I+F +++ ++ ++ Sbjct 620 EAVETVEQRVEFVAGEDKRKKRLNEILA---SGEFQPPIIVFVNIKRNCDAVARDIKH-- 674 Query 392 GLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN 451 +G + + TQ ++ + + G N+LVAT +A G+D+P + Sbjct 675 ------------MGFTSVTLHGSKTQEQREAALASVRSGATNVLVATDLAGRGIDVPDVS 722 Query 452 VVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAA 509 +VV + + TN S GR RA +S A + +L +++ + + Sbjct 723 LVVNFNMATNIESYTHRIGRTGRAGKSGVAITFLGNEDADTMYDLKQMLMKSSISRVPEE 782 Query 510 VQKMDQAEYQA 520 ++K + A+ ++ Sbjct 783 LRKHEAAQQKS 793 Score = 59.8 bits (143), Expect = 7e-08, Method: Composition-based stats. Identities = 27/140 (19%), Positives = 47/140 (34%), Gaps = 16/140 (11%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT---------RAAAYVAKRHLETVDGAKVVVLVNRV 57 Q I AL+ +++I TG+GKT + DG ++L Sbjct 406 QRAAIPIALQARDLIGVAVTGSGKTAAFLLPLLVYISELPPLNEFTKNDGPYAIILAPTR 465 Query 58 HLVTQHGEEFRR--MLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE 115 L Q E + +T ++ G +L +++I T L + Sbjct 466 EL-AQQIEVEAKKFATPLGFTCVSIVGGHSLEEQSYNLRNGAEIIIATPGRLVDCI---- 520 Query 116 EEEHVELTVFSLIVVDECHH 135 E + L I++DE Sbjct 521 ERRVLVLGQCCYIIMDEADR 540 >sp|Q810A7|DDX42_MOUSE ATP-dependent RNA helicase DDX42 OS=Mus musculus OX=10090 GN=Ddx42 PE=1 SV=3 Length=929 Score = 114 bits (285), Expect = 6e-25, Method: Composition-based stats. Identities = 57/301 (19%), Positives = 102/301 (34%), Gaps = 55/301 (18%) Query 234 KKLMDQIHDHLE------MPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRY 287 ++L QIH + +G +Q L E A + R+ ++ Sbjct 336 RELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKA 395 Query 288 -----NDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLL--ALFDDRKNELAH 340 L+ + R D F ++ + + + LL A F + +LA Sbjct 396 TNLQRVSYLVFDEADRMFDM-----GFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLAR 450 Query 341 LATHGPE----------NPKLEMLEKIL-----------QRQFSSSNSPRGIIFTRTRQS 379 P N + + +IL +R ++S ++F + + Sbjct 451 DILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKAN 510 Query 380 AHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATS 439 A L L+Q+ G M Q ++ +VI F+ + +LVAT Sbjct 511 AEELASNLKQE--------------GHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATD 556 Query 440 VAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINE 497 VA GLDIP V+ Y + + + GR RA + A+ + T +L+ Sbjct 557 VAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRN 616 Query 498 A 498 Sbjct 617 L 617 Score = 63.3 bits (152), Expect = 6e-09, Method: Composition-based stats. Identities = 32/138 (23%), Positives = 51/138 (37%), Gaps = 15/138 (11%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT--RAAAYVA----KRHLETVDGAKVVVLVNRVHLV 60 Q + + AL G+++I TG+GKT + ++ LE DG V++ L Sbjct 280 QCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELC 339 Query 61 TQHGEEFRRMLDG---RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE 117 Q E +R R G M +A L ++++CT L + Sbjct 340 QQIHAECKRFGKAYNLRSVAVYGGGSMWEQA--KALQEGAEIVVCTPGRLIDHVKKKATN 397 Query 118 EHVELTVFSLIVVDECHH 135 L S +V DE Sbjct 398 ----LQRVSYLVFDEADR 411 >sp|Q94A52|RH2_ARATH Eukaryotic initiation factor 4A-III homolog OS=Arabidopsis thaliana OX=3702 GN=EIF4A3 PE=1 SV=2 Length=408 Score = 111 bits (277), Expect = 7e-25, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 62/166 (37%), Gaps = 17/166 (10%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K E L + + + +IF T++ L ++ S Sbjct 257 KEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDYLSEKMRSHN--------------FTVS 302 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 S M Q+++ ++ +F+ G +L+ T V G+D+ ++V+ Y L N + Sbjct 303 SMHGDMPQKERDAIMNEFRSGDSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRI 362 Query 470 GR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKM 513 GR R + A ++ R+ I + T +++ V + Sbjct 363 GRSGRFGRKGVAINFVKSDDIKILRD-IEQYYSTQIDEMPMNVADL 407 Score = 48.6 bits (114), Expect = 1e-04, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 44/128 (34%), Gaps = 6/128 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT-RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q +MP L+G+++I +G GKT A V + + + ++L L TQ + Sbjct 62 QQRAVMPILQGRDVIAQAQSGTGKTSMIALSVCQVVDTSSREVQALILSPTRELATQTEK 121 Query 66 EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 + + G L ++ T + + + Sbjct 122 TIQAIGLHANIQAHACIGGNSVGEDIRKLEHGVHVVSGTPGRVCDMIKRRS----LRTRA 177 Query 125 FSLIVVDE 132 L+++DE Sbjct 178 IKLLILDE 185 >sp|P41381|IF4A8_TOBAC Eukaryotic initiation factor 4A-8 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 Length=413 Score = 111 bits (277), Expect = 7e-25, Method: Composition-based stats. Identities = 34/201 (17%), Positives = 75/201 (37%), Gaps = 20/201 (10%) Query 315 VTKTQILCAERRLLALFDDRKNELAHLATH-GPENPKLEMLEKILQRQFSSSNSPRGIIF 373 +T+ + R L+ + + + E KLE L + + + + +IF Sbjct 230 ITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDL----YETLAITQSVIF 285 Query 374 TRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN 433 TR+ L ++ + S+ M Q + ++++F+ G+ Sbjct 286 VNTRRKVDWLTDKMRTRD--------------HTVSATHGDMDQNTRDIIMREFRSGSSR 331 Query 434 LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKR 492 +L+ T + G+D+ ++V+ Y L T + + GR R + A E Sbjct 332 VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTDDERML 391 Query 493 ELINEALETLMEQAVAAVQKM 513 I + ++E+ + V + Sbjct 392 FDIQKFYNVIIEELPSNVADL 412 >sp|Q5ACK7|DRS1_CANAL ATP-dependent RNA helicase DRS1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DRS1 PE=3 SV=1 Length=613 Score = 113 bits (282), Expect = 7e-25, Method: Composition-based stats. Identities = 59/352 (17%), Positives = 121/352 (34%), Gaps = 44/352 (13%) Query 205 PQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVK 264 P ++ +P + + + ++ H+ + G QQ + Sbjct 187 PIIERLLYKPSTSTKVIILTPTRELALQVYEFGKKLSHHVNNLNIGLAVGGLNLRQQEEQ 246 Query 265 LSEAAALAGLQEQRVYALHLR-------RYNDALLIHDTVRAV-----DALAALQDFYHR 312 L + R+ H+R + L+I + R + D L + + Sbjct 247 LKTRPDIVIATPGRLID-HIRNSPSFSVQDIQVLVIDEADRMLEEGFQDELTEILSLIPK 305 Query 313 EHVTKTQILCA-ERRLLALFDDRKNELAHLATHGPENP------------KLEMLEKILQ 359 R+ L + + P++ K + L+ L Sbjct 306 HKRQTLLFSATMNTRIQDLIQLSLQKPVRIMIDPPKSVASKLLQQFVRIRKRDQLKPALL 365 Query 360 RQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRD 419 Q S R ++F +++AH L + L L+G S +TQ Sbjct 366 YQLLKGVSSRVVVFVARKETAHRLRIVLG--------------LLGLKVSELHGALTQEQ 411 Query 420 QQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSV 478 + + ++ F+ + +L+ T +A GLDIP +V+ Y + + GR ARA + Sbjct 412 RLQNVKNFKSLEVPVLICTDLAARGLDIPKIELVINYDMPKTFEIYLHRVGRTARAGRDG 471 Query 479 YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAAL 530 + G +R ++ A+ + + VA QAE K+ + +++ + Sbjct 472 TSITFV-GESSQERAIVKSAI--VNGKGVAKTVDWKQAEETNKLLESKESVI 520 Score = 53.3 bits (126), Expect = 5e-06, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 45/126 (36%), Gaps = 7/126 (6%) Query 14 ALEGKNIIIWLPTGAGKTRAAAYVAKR--HLETVDGAKVVVLVNRVHLVTQHGEEFRR-- 69 AL GK+I+ TG+GKT A + KV++L L Q E ++ Sbjct 164 ALLGKDIVAGAQTGSGKTGAYMIPIIERLLYKPSTSTKVIILTPTRELALQVYEFGKKLS 223 Query 70 MLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIV 129 + G + R L D++I T L + + + ++V Sbjct 224 HHVNNLNIGLAVGGLNLRQQEEQLKTRPDIVIATPGRLIDHIRNSPS---FSVQDIQVLV 280 Query 130 VDECHH 135 +DE Sbjct 281 IDEADR 286 >sp|Q40469|IF4A6_TOBAC Eukaryotic initiation factor 4A-6 (Fragment) OS=Nicotiana tabacum OX=4097 PE=2 SV=1 Length=253 Score = 107 bits (267), Expect = 8e-25, Method: Composition-based stats. Identities = 34/201 (17%), Positives = 75/201 (37%), Gaps = 20/201 (10%) Query 315 VTKTQILCAERRLLALFDDRKNELAHLATH-GPENPKLEMLEKILQRQFSSSNSPRGIIF 373 +T+ + R L+ + + + E KLE L + + + + +IF Sbjct 71 ITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDL----YETLAITQSVIF 126 Query 374 TRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN 433 TR+ L ++ + S+ M Q + ++++F+ G+ Sbjct 127 VNTRRKVDWLTDKMRGRD--------------HTVSATHGDMDQNTRDIIMREFRSGSSR 172 Query 434 LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKR 492 +L+ T + G+D+ ++V+ Y L T + + GR R + + E Sbjct 173 VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVSINFVTKDDERML 232 Query 493 ELINEALETLMEQAVAAVQKM 513 I + ++E+ A V + Sbjct 233 FDIQKFYNVVIEELPANVADL 253 >sp|Q26696|DDX17_TRYBB Putative DEAD-box RNA helicase HEL64 OS=Trypanosoma brucei brucei OX=5702 GN=HEL64 PE=3 SV=1 Length=568 Score = 112 bits (281), Expect = 8e-25, Method: Composition-based stats. Identities = 39/205 (19%), Positives = 74/205 (36%), Gaps = 27/205 (13%) Query 347 ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA 406 E K + L K++Q R ++F + +++A L L++ G Sbjct 329 EFAKQDELRKLMQEH----REERVLVFCKMKRTADELERQLRRW--------------GY 370 Query 407 GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV 466 + QR ++ ++ +F+ LVAT VA GLDI V+ Y V Sbjct 371 DAMAIHGDKEQRQREFILARFRKDPRLCLVATDVAARGLDIKQLETVINYDFPMQIDDYV 430 Query 467 QARGR-ARADQSVYA-FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD 524 GR RA ++ T+ ++ ++ E + ++E+A + + Sbjct 431 HRIGRTGRAGGEGRCVYLITKKEAQITPSVLKELIG-ILERAQQEIPDWMIEW------N 483 Query 525 LQQAALTKRAAQAAQRENQRQQFPV 549 QQ + + + Q P Sbjct 484 AQQPRYQVKRNRGMNGFGRHQSAPF 508 Score = 59.8 bits (143), Expect = 5e-08, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 50/127 (39%), Gaps = 10/127 (8%) Query 15 LEGKNIIIWLPTGAGKTR------AAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFR 68 L G++++ TG+GKT A + L + DG VVVL L Q EE + Sbjct 137 LSGRDLVGVAKTGSGKTLGFMVPALAHIAVQEPLRSGDGPMVVVLAPTRELAQQIEEETK 196 Query 69 RMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLI 128 +++ G + G G L R +L+ T L L + L + + Sbjct 197 KVIPGDVYCGCVYGGAPKGPQLGLLRRGVHILVATPGRLIDFLDIKR----INLHRVTYL 252 Query 129 VVDECHH 135 V+DE Sbjct 253 VLDEADR 259 >sp|Q0V1Z7|DRS1_PHANO ATP-dependent RNA helicase DRS1 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) OX=321614 GN=DRS1 PE=3 SV=1 Length=808 Score = 113 bits (283), Expect = 8e-25, Method: Composition-based stats. Identities = 61/367 (17%), Positives = 135/367 (37%), Gaps = 39/367 (11%) Query 201 QNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQ 260 + Q + + ++ F +++M + + + +F M+ Sbjct 366 RELAVQCFNVATKLASFTDITFALLAGGFSSREQEVMLKTRPDVVIA-TPGRFIDHMHNT 424 Query 261 QVVKLSEAAALAGLQEQRVYALHLR-RYNDALLIHDTVRAVDALAALQDFYHREHVTKTQ 319 ++ L + R+ + N+ L R +A V K Sbjct 425 AAFQVEHLEILVLDEADRMLEEGFETQLNEILTTIPKSRQTMLFSAT----MTSTVDKLI 480 Query 320 ILCAERRLLALFDDRKNELAHLA------THGPENPKLEMLEKILQRQFSSSNSPRGIIF 373 + ++ + + D +K+ + L G E+ +L L I ++ ++ R IIF Sbjct 481 RIGMDKPVRLMVDAKKHTVKGLTQEFIRLRQGKEDKRLAYLMYICEKIYTE----RVIIF 536 Query 374 TRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN 433 R ++ AH + + L G S +M+Q + + ++ F+ G + Sbjct 537 FRQKKEAHRVRVVF--------------ALCGLKASELHGNMSQEQRIQAVEAFRSGKSS 582 Query 434 LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYA-FVATEGSRELK 491 L+AT VA GLDI + + V+ Y + + GR ARA +S A +A E R++ Sbjct 583 YLLATDVASRGLDIKNVSTVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKVV 642 Query 492 RELINEAL----ETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQ---RENQR 544 ++ + ++ + + Q + + +++ ++ + R+ +R Sbjct 643 KQAVKQSRDQGSKVVSRQVPVEETDRWMEKLRGLEDEIEDVLKEEKEERTLSITERDLKR 702 Query 545 QQFPVEH 551 +EH Sbjct 703 GMNLIEH 709 Score = 47.5 bits (111), Expect = 4e-04, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 47/136 (35%), Gaps = 12/136 (9%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT---RAAAY-VAKRHLETVDGAKVVVLVNRVHLVTQ 62 Q + I A++GK+++ TG+GKT + V +V + + L Q Sbjct 312 QAKAIPIAMQGKDVVGGAETGSGKTAAFLIPILERLLYRPKKVPTTRVAIFMPTRELAVQ 371 Query 63 HGEE---FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 D + L+G R L D++I T + + Sbjct 372 CFNVATKLASFTDITF--ALLAGGFSSREQEVMLKTRPDVVIATPGRFIDHMHNT---AA 426 Query 120 VELTVFSLIVVDECHH 135 ++ ++V+DE Sbjct 427 FQVEHLEILVLDEADR 442 >sp|Q4FZF3|DDX49_MOUSE Probable ATP-dependent RNA helicase DDX49 OS=Mus musculus OX=10090 GN=Ddx49 PE=2 SV=1 Length=480 Score = 112 bits (279), Expect = 8e-25, Method: Composition-based stats. Identities = 45/209 (22%), Positives = 78/209 (37%), Gaps = 16/209 (8%) Query 346 PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 PE K L ++Q IIFT T ++ L + L++ Sbjct 227 PEKVKDAYLVHLVQTFQDQLEDCSIIIFTNTCKTCQILCMMLRKFNFPTV---------- 276 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465 + + M Q+++ + KF+ +L+AT VA GLDIP VV+ + Sbjct 277 ----ALHSMMKQKERFAALAKFKSSIYRILIATDVASRGLDIPTVQVVINHNTPGLPKIY 332 Query 466 VQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIR 523 + GR ARA + A + T+ L + + + L E V + + +R Sbjct 333 IHRVGRTARAGRQGQAITLVTQYDIHLLHAIEEQIKQQLAELVVEEAEVLQILTQVNVVR 392 Query 524 DLQQAALTKRAAQAAQRENQRQQFPVEHV 552 + L + N+R+Q +E Sbjct 393 RECEIKLEASHFDEKKEINKRKQMILEGK 421 Score = 57.5 bits (137), Expect = 3e-07, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 47/131 (36%), Gaps = 5/131 (4%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE 65 Q I LEG++ + TG+GKT A + L +VL L Q E Sbjct 29 QLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSEDPYGIFCLVLTPTRELAYQIAE 88 Query 66 EFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 +FR + + G M A L+R ++I T L L S + Sbjct 89 QFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIATPGRLADHLRSSNT---FNMKK 145 Query 125 FSLIVVDECHH 135 +V+DE Sbjct 146 IQFLVMDEADR 156 >sp|Q10055|FAL1_SCHPO ATP-dependent RNA helicase fal1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=tif412 PE=1 SV=1 Length=394 Score = 110 bits (275), Expect = 9e-25, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 66/166 (40%), Gaps = 17/166 (10%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K E L + + + +IF +R+ L +++ + + G Sbjct 243 KEEWKFDTLCDLYDTLTITQAVIFCNSRRKVDWLTEKMRE------ANFTVTSMHG---- 292 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 M Q+++ ++Q F+ G +L+ T + G+D+ ++V+ Y L N + + Sbjct 293 ----EMPQKERDAIMQDFRQGNSRVLICTDIWARGIDVQQVSLVINYDLPANRENYIHRI 348 Query 470 GR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKM 513 GR R + A T + R+ I + T++++ + M Sbjct 349 GRSGRFGRKGVAINFVTNEDVRILRD-IEQYYSTVIDEMPMNIGDM 393 Score = 41.7 bits (96), Expect = 0.020, Method: Composition-based stats. Identities = 16/120 (13%), Positives = 39/120 (33%), Gaps = 6/120 (5%) Query 16 EGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGR 74 +G+++I +G GKT + + + +V + ++L L Q + D Sbjct 57 KGRDVIAQAQSGTGKTATFSIGILQSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHM 116 Query 75 WTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC 133 G L ++ T + + ++ ++++DE Sbjct 117 NVQCHACIGGTSVGNDIKKLDYGQHVVSGTPGRVTDMI----RRRNLRTRNVKMLILDEA 172 >sp|A4R8G3|DBP8_PYRO7 ATP-dependent RNA helicase DBP8 OS=Pyricularia oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 GN=DBP8 PE=3 SV=3 Length=579 Score = 112 bits (280), Expect = 1e-24, Method: Composition-based stats. Identities = 55/242 (23%), Positives = 95/242 (39%), Gaps = 26/242 (11%) Query 305 ALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSS 364 AL++ R + + ++LA+ D K L E+ L + L ++ Sbjct 347 ALKEMPTRPGKEPVHVCEVDTQVLAIPDSLKQSYIQLTVTHREH----FLHEFLLT--AA 400 Query 365 SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI 424 + IIF +A L+ +S + + Q+ + + + Sbjct 401 NTERSIIIFVNRTSTAQ--------------FLHHLLRLLDHRVTSLHSKLRQQQRIDNL 446 Query 425 QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVA 483 +F+ +LVAT VA GLDIP +VVV Y L + + GR ARA + A Sbjct 447 GRFRASAARILVATDVASRGLDIPEVSVVVNYDLPRDPDDYIHRVGRTARAGRKGEAVNF 506 Query 484 TEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD-LQQAALTKRAAQAAQREN 542 G R+++ L A+E + + + ++ IRD L+ + KR A EN Sbjct 507 V-GQRDVELVL---AIEKRVGRPMEKWEEEGVNLETRVIRDSLKLVSEKKREALLNIEEN 562 Query 543 QR 544 + Sbjct 563 RE 564 Score = 52.9 bits (125), Expect = 7e-06, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 2/123 (2%) Query 15 LEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDG 73 L+G++ I TG+GKT A A + +++ + VVL L Q E+F+ + Sbjct 183 LKGRDCIGGSRTGSGKTIAFAVPILQKYAQDPSAIFAVVLTATRELALQIYEQFKAVSSP 242 Query 74 RW-TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDE 132 + G R+ LA+ ++I T L + S E+ L +V+DE Sbjct 243 HVLKAALIIGGSDMRSQAIALAQRPSIVIATPGRLADHIRSSGEDTICGLRRVKFLVLDE 302 Query 133 CHH 135 Sbjct 303 ADR 305 >sp|A6S4N4|FAL1_BOTFB ATP-dependent RNA helicase fal1 OS=Botryotinia fuckeliana (strain B05.10) OX=332648 GN=fal1 PE=3 SV=1 Length=399 Score = 110 bits (275), Expect = 1e-24, Method: Composition-based stats. Identities = 29/147 (20%), Positives = 58/147 (39%), Gaps = 16/147 (11%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K + L + + + +IF TR+ L +++ S Sbjct 247 KEDWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREAN--------------FTVS 292 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 S M Q+++ ++Q F+ G +L++T V G+D+ ++V+ Y L N + + Sbjct 293 SMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPVNRENYIHRI 352 Query 470 GR-ARADQSVYAF-VATEGSRELKREL 494 GR R + A T + R++ Sbjct 353 GRSGRFGRKGVAINFVTSEDVRILRDI 379 Score = 42.9 bits (99), Expect = 0.008, Method: Composition-based stats. Identities = 20/120 (17%), Positives = 40/120 (33%), Gaps = 6/120 (5%) Query 16 EGKNIIIWLPTGAGKTRAAAYVAKRHLET-VDGAKVVVLVNRVHLVTQHGEEFRRMLDGR 74 +G++ I +G GKT + + ++T V + +VL L TQ + D Sbjct 61 KGRDTIAQAQSGTGKTATFSISMLQVIDTAVRETQALVLSPTRELATQIQSVVMALGDYM 120 Query 75 WTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC 133 G L ++ T + + ++ ++V+DE Sbjct 121 NVQCHACIGGTNVGEDIRKLDYGQHIVSGTPGRVADMI----RRRNLRTRHIKMLVLDEA 176 >sp|Q7SEL0|PRP28_NEUCR Pre-mRNA-splicing ATP-dependent RNA helicase prp-28 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=prp-28 PE=3 SV=1 Length=728 Score = 113 bits (282), Expect = 1e-24, Method: Composition-based stats. Identities = 68/400 (17%), Positives = 137/400 (34%), Gaps = 80/400 (20%) Query 137 HKDTVYNVIM---SQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLD 193 D Y +I+ + ++ A+ LG T GG S + A N Sbjct 366 KNDGPYALILAPTRELVQQIESEAKKFATPLGFTVVSIVGGHSLEEQAFAL-----RNGA 420 Query 194 TWCIMSPQ---NCCPQLQEHSQQPCKQYNLCHRRSQDP-FGDLLKKLMDQI--------H 241 + +P +C + Q C R D F + L K++D + Sbjct 421 EIIVATPGRLVDCLERRLLVFSQCCYTIMDEADRMIDQGFEEPLTKILDAMPVTNEKPDT 480 Query 242 DHLEMPELSRKF--GTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRA 299 D E P+L ++ G Y Q ++ + + +R+ +LRR Sbjct 481 DDAENPQLMSRYVDGKDRYRQTMMYTATMPPIV----ERIAKKYLRR------------- 523 Query 300 VDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQ 359 + E+R + E+ + + L++IL Sbjct 524 --------PAIVTIGNAGEAVDTVEQR--------------VEFVSGEDKRKKRLQEILN 561 Query 360 RQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRD 419 S P I+F +++ + ++ +G + TQ Sbjct 562 ---SGQFKPPIIVFVNIKRNCDMVARDIKG--------------MGYSAVTLHGSKTQEQ 604 Query 420 QQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSV 478 ++ + ++G ++LVAT +A G+D+P ++VV + + TN S GR RA +S Sbjct 605 REAALASLRNGQTDILVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIGRTGRAGKSG 664 Query 479 YAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQAE 517 A ++ +L ++ + + +++ + A+ Sbjct 665 VAITFLGPEDNDVLYDLRQIISKSSISKVPDELRRHEAAQ 704 Score = 59.0 bits (141), Expect = 1e-07, Method: Composition-based stats. Identities = 39/187 (21%), Positives = 64/187 (34%), Gaps = 31/187 (17%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT---------RAAAYVAKRHLETVDGAKVVVLVNRV 57 Q I AL+ +++I TG+GKT + DG ++L Sbjct 320 QRAAIPIALQARDLIGVAVTGSGKTAAFLLPLLVYISELPPLTEYNKNDGPYALILAPTR 379 Query 58 HLVTQHGEEFRRM-LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE 116 LV Q E ++ +TV ++ G L ++++ T L L Sbjct 380 ELVQQIESEAKKFATPLGFTVVSIVGGHSLEEQAFALRNGAEIIVATPGRLVDCLERR-- 437 Query 117 EEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGAS 176 L+V +C +T D +I + +PL ++L A P T Sbjct 438 ----------LLVFSQCCYTIMDEADRMIDQGF-------EEPLTKILD--AMPVTNEKP 478 Query 177 KLDGAIN 183 D A N Sbjct 479 DTDDAEN 485 >sp|Q10I26|IF43B_ORYSJ Eukaryotic initiation factor 4A-III homolog B OS=Oryza sativa subsp. japonica OX=39947 GN=EIF4A3B PE=1 SV=1 Length=404 Score = 110 bits (275), Expect = 1e-24, Method: Composition-based stats. Identities = 29/165 (18%), Positives = 59/165 (36%), Gaps = 15/165 (9%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K E L + + + +IF T++ L ++ S Sbjct 253 KEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTERMRSNN--------------FTVS 298 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + M Q+++ ++ +F+ G +L+ T V GLD+ ++V+ Y L N + Sbjct 299 AMHGDMPQKERDAIMGEFRSGATRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRI 358 Query 470 GR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM 513 GR R + A + I + T +++ V + Sbjct 359 GRSGRFGRKGVAINFVKKEDIRILRDIEQYYSTQIDEMPMNVADL 403 Score = 47.9 bits (112), Expect = 3e-04, Method: Composition-based stats. Identities = 19/131 (15%), Positives = 47/131 (36%), Gaps = 10/131 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT-RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q ++P + G+++I +G GKT + V + V + ++L L Q Sbjct 58 QQRAVLPIISGRDVIAQAQSGTGKTSMISLSVCQIVDTAVREVQALILSPTRELAAQTER 117 Query 66 EFRRMLDGRWTVTTLSGDMGPRAGFGHLAR---CHDLLICTAELLQMALTSPEEEEHVEL 122 + D + + +G ++ + + ++ T + + + Sbjct 118 VMLAIGD--YINIQVHACIGGKSIGEDIRKLEHGVHVVSGTPGRVCDMIKRRT----LRT 171 Query 123 TVFSLIVVDEC 133 L+++DE Sbjct 172 RAIKLLILDEA 182 >sp|Q5VNM3|IF43A_ORYSJ Eukaryotic initiation factor 4A-III homolog A OS=Oryza sativa subsp. japonica OX=39947 GN=EIF4A3A PE=1 SV=1 Length=404 Score = 110 bits (275), Expect = 1e-24, Method: Composition-based stats. Identities = 29/165 (18%), Positives = 59/165 (36%), Gaps = 15/165 (9%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K E L + + + +IF T++ L ++ S Sbjct 253 KEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTERMRSNN--------------FTVS 298 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + M Q+++ ++ +F+ G +L+ T V GLD+ ++V+ Y L N + Sbjct 299 AMHGDMPQKERDAIMGEFRSGATRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRI 358 Query 470 GR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM 513 GR R + A + I + T +++ V + Sbjct 359 GRSGRFGRKGVAINFVKKEDIRILRDIEQYYSTQIDEMPMNVADL 403 Score = 47.1 bits (110), Expect = 4e-04, Method: Composition-based stats. Identities = 20/129 (16%), Positives = 41/129 (32%), Gaps = 6/129 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT-RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q ++P + G+++I +G GKT + V + V + ++L L Q Sbjct 58 QQRAVLPIISGRDVIAQAQSGTGKTSMISLSVCQIVDTAVREVQALILSPTRELAAQTER 117 Query 66 EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 + D G L ++ T + + + Sbjct 118 VMLAIGDFINIQVHACIGGKSIGEDIRKLEHGVHVVSGTPGRVCDMIKRRT----LRTRA 173 Query 125 FSLIVVDEC 133 L+++DE Sbjct 174 IKLLILDEA 182 >sp|P41380|IF4A3_NICPL Eukaryotic initiation factor 4A-3 OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1 Length=391 Score = 110 bits (274), Expect = 1e-24, Method: Composition-based stats. Identities = 32/166 (19%), Positives = 64/166 (39%), Gaps = 17/166 (10%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K E L + + + +IF T++ L +++ S Sbjct 240 KEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTSKMRENN--------------FTVS 285 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 S M Q+++ ++ +F+ GT +L+ T V GLD+ ++V+ Y L N + Sbjct 286 SMHGDMPQKERDAIMAEFRGGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRI 345 Query 470 GR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKM 513 GR R + A ++ R+ I + T +++ V + Sbjct 346 GRSGRFGRKGVAINFVKSDDIKILRD-IEQYYSTQIDEMPMNVADL 390 Score = 51.7 bits (122), Expect = 1e-05, Method: Composition-based stats. Identities = 20/128 (16%), Positives = 41/128 (32%), Gaps = 6/128 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT-RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q ++P + G+++I +G GKT A V + + ++L L Q + Sbjct 45 QQRAVLPIISGRDVIAQAQSGTGKTSMIALTVCQIVDTKSSEVQALILSPTRELAAQTEK 104 Query 66 EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 + D G L ++ T + + + Sbjct 105 VILAIGDYINVQAHACIGGKSVGEDIRKLEHGVQVVSGTPGRVCDMIKRRT----LRTRG 160 Query 125 FSLIVVDE 132 L+++DE Sbjct 161 IKLLILDE 168 >sp|P41382|IF410_TOBAC Eukaryotic initiation factor 4A-10 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 Length=413 Score = 110 bits (275), Expect = 1e-24, Method: Composition-based stats. Identities = 36/201 (18%), Positives = 75/201 (37%), Gaps = 20/201 (10%) Query 315 VTKTQILCAERRLLALFDDRKNELAHLATH-GPENPKLEMLEKILQRQFSSSNSPRGIIF 373 +T+ + R L+ D + + E KLE L + + + + +IF Sbjct 230 ITRKFMNKPVRILVKRDDVTLEGIKQFYVNVDKEEWKLETLCDL----YETLAITQSVIF 285 Query 374 TRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN 433 TR+ L ++ + S+ M Q + ++++F+ G+ Sbjct 286 VNTRRKVDWLTDKMRSRD--------------HTVSATHGDMDQNTRDIIMREFRSGSSR 331 Query 434 LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKR 492 +L+ T + G+D+ ++V+ Y L T + + GR R + A E Sbjct 332 VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERML 391 Query 493 ELINEALETLMEQAVAAVQKM 513 I + ++E+ A V + Sbjct 392 SDIQKFYNVVIEELPANVADL 412 >sp|Q91VN6|DDX41_MOUSE Probable ATP-dependent RNA helicase DDX41 OS=Mus musculus OX=10090 GN=Ddx41 PE=1 SV=2 Length=622 Score = 112 bits (281), Expect = 1e-24, Method: Composition-based stats. Identities = 52/310 (17%), Positives = 109/310 (35%), Gaps = 30/310 (10%) Query 206 QLQEHSQQPCKQYNLCHRRSQDPF--------GDLLKKLMDQIHDHLEMPELSRKFGTQM 257 +L + + Y + P G +K+ M+ I + M + + Sbjct 268 ELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDL 327 Query 258 YEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTK 317 ++++V L LA + R+ + + + + L + ++ K Sbjct 328 LQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAK 387 Query 318 TQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTR 377 + ++ + ++ + E K+ L + LQ+ P +IF + Sbjct 388 SALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQK-----TPPPVLIFAEKK 442 Query 378 QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA 437 ++ +L LL G + Q ++ + I+ F++G ++LVA Sbjct 443 ADVDAIHEYL--------------LLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVA 488 Query 438 TSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYA--FVATEGSRELKREL 494 T VA +GLD P V+ Y + + V GR R+ + A F+ + +L Sbjct 489 TDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDL 548 Query 495 INEALETLME 504 LE + Sbjct 549 KALLLEAKQK 558 Score = 35.9 bits (81), Expect = 1.4, Method: Composition-based stats. Identities = 22/145 (15%), Positives = 41/145 (28%), Gaps = 20/145 (14%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA----AAYVAKRHLETVDGAKV-----VVLVNRV 57 Q + I L G+++I TG+GKT + + +K +++ Sbjct 208 QIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSR 267 Query 58 HLVTQHGEEFRRM-------LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMA 110 L Q G M + + +++ T L Sbjct 268 ELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDL 327 Query 111 LTSPEEEEHVELTVFSLIVVDECHH 135 L V L + + +DE Sbjct 328 LQKKM----VSLDICRYLALDEADR 348 >sp|Q40467|IF414_TOBAC Eukaryotic initiation factor 4A-14 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 Length=413 Score = 110 bits (275), Expect = 1e-24, Method: Composition-based stats. Identities = 36/201 (18%), Positives = 75/201 (37%), Gaps = 20/201 (10%) Query 315 VTKTQILCAERRLLALFDDRKNELAHLATH-GPENPKLEMLEKILQRQFSSSNSPRGIIF 373 +T+ + R L+ D + + E KLE L + + + + +IF Sbjct 230 ITRKFMSKPVRILVKRDDVTLEGIKQFYVNVDKEEWKLETLCDL----YETLAITQSVIF 285 Query 374 TRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN 433 TR+ L ++ + S+ M Q + ++++F+ G+ Sbjct 286 VNTRRKVDWLTDKMRSRD--------------HTVSATHGDMDQNTRDIIMREFRSGSSR 331 Query 434 LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKR 492 +L+ T + G+D+ ++V+ Y L T + + GR R + A E Sbjct 332 VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERML 391 Query 493 ELINEALETLMEQAVAAVQKM 513 I + ++E+ A V + Sbjct 392 FDIQKFYNVVIEELPANVADL 412 >sp|Q2UH00|PRP28_ASPOR Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=prp28 PE=3 SV=1 Length=803 Score = 113 bits (282), Expect = 1e-24, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 75/182 (41%), Gaps = 19/182 (10%) Query 338 LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD 397 + E+ + + L IL S P I+F +++ ++ ++Q Sbjct 616 EQRVEFIAGEDKRKKRLGDILS---SGEFRPPIIVFVNIKRNCDAIAREIKQW------- 665 Query 398 IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG 457 G + + TQ ++ + ++G ++LVAT +A G+D+P ++V+ + Sbjct 666 -------GFSSVTLHGSKTQEQREAALASVRNGQTDVLVATDLAGRGIDVPDVSLVINFN 718 Query 458 LLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQ 515 + T S GR RA +S A ++ +L +++ + + ++K + Sbjct 719 MATTIESYTHRIGRTGRAGKSGVAITFLGNEDTDVMYDLKQMIMKSSISRLPEELRKHEA 778 Query 516 AE 517 A+ Sbjct 779 AQ 780 Score = 57.9 bits (138), Expect = 3e-07, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 75/234 (32%), Gaps = 39/234 (17%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT---------RAAAYVAKRHLETV--DGAKVVVLVN 55 Q I A++ +++I TG+GKT A E DG +VL Sbjct 394 QRAAIPIAMQSRDLIGVAVTGSGKTASFLLPLLVYIAELPRIDEFEWRKNDGPYAIVLAP 453 Query 56 RVHLVTQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP 114 L Q E ++ + + V ++ G L +++I T L + Sbjct 454 TRELAQQIEIEAKKFTEPLGFNVVSIVGGHSFEEQAYSLRNGAEIIIATPGRLVDCI--- 510 Query 115 EEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGG 174 E + L+ +++DE + L +P+ ++L A P + Sbjct 511 -ERRMLVLSQCCYVIMDEADR---------------MIDLGFEEPVNKILD--ALPVSNE 552 Query 175 ASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 + A N + + I + + + P + + + P Sbjct 553 KPDSEEAENSMAM------SQHIGTKDRYRQTMMYTATMPTAVERIARKYLRRP 600 >sp|Q9UJV9|DDX41_HUMAN Probable ATP-dependent RNA helicase DDX41 OS=Homo sapiens OX=9606 GN=DDX41 PE=1 SV=2 Length=622 Score = 112 bits (280), Expect = 1e-24, Method: Composition-based stats. Identities = 52/310 (17%), Positives = 109/310 (35%), Gaps = 30/310 (10%) Query 206 QLQEHSQQPCKQYNLCHRRSQDPF--------GDLLKKLMDQIHDHLEMPELSRKFGTQM 257 +L + + Y + P G +K+ M+ I + M + + Sbjct 268 ELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDL 327 Query 258 YEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTK 317 ++++V L LA + R+ + + + + L + ++ K Sbjct 328 LQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAK 387 Query 318 TQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTR 377 + ++ + ++ + E K+ L + LQ+ P +IF + Sbjct 388 SALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQK-----TPPPVLIFAEKK 442 Query 378 QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA 437 ++ +L LL G + Q ++ + I+ F++G ++LVA Sbjct 443 ADVDAIHEYL--------------LLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVA 488 Query 438 TSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYA--FVATEGSRELKREL 494 T VA +GLD P V+ Y + + V GR R+ + A F+ + +L Sbjct 489 TDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDL 548 Query 495 INEALETLME 504 LE + Sbjct 549 KALLLEAKQK 558 Score = 35.9 bits (81), Expect = 1.5, Method: Composition-based stats. Identities = 22/145 (15%), Positives = 41/145 (28%), Gaps = 20/145 (14%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA----AAYVAKRHLETVDGAKV-----VVLVNRV 57 Q + I L G+++I TG+GKT + + +K +++ Sbjct 208 QIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSR 267 Query 58 HLVTQHGEEFRRM-------LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMA 110 L Q G M + + +++ T L Sbjct 268 ELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDL 327 Query 111 LTSPEEEEHVELTVFSLIVVDECHH 135 L V L + + +DE Sbjct 328 LQKKM----VSLDICRYLALDEADR 348 >sp|Q0CLX0|PRP28_ASPTN Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=prp28 PE=3 SV=1 Length=783 Score = 113 bits (282), Expect = 1e-24, Method: Composition-based stats. Identities = 34/182 (19%), Positives = 77/182 (42%), Gaps = 19/182 (10%) Query 338 LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD 397 + E+ + + L IL S P I+F +++ ++ ++Q Sbjct 596 EQRVELIAGEDKRKKRLGDILS---SGEFRPPIIVFVNIKRNCDAIAREIKQW------- 645 Query 398 IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG 457 G + + TQ ++ + ++G+ ++LVAT +A G+D+P ++VV + Sbjct 646 -------GFSSVTLHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFN 698 Query 458 LLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQ 515 + T+ S GR RA +S A ++ +L +++ + + ++K + Sbjct 699 MATSIESYTHRIGRTGRAGKSGVAITFLGNEDADVMYDLKQMLIKSPISRVPDELRKHEA 758 Query 516 AE 517 A+ Sbjct 759 AQ 760 Score = 58.3 bits (139), Expect = 2e-07, Method: Composition-based stats. Identities = 29/141 (21%), Positives = 50/141 (35%), Gaps = 16/141 (11%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT---------RAAAYVAKRHLETV--DGAKVVVLVN 55 Q I A++ +++I TG+GKT A E DG +VL Sbjct 370 QRAAIPIAMQSRDLIGVAVTGSGKTAAFLLPLLVYIAELPRIDEFEWRKNDGPYAIVLAP 429 Query 56 RVHLVTQ-HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP 114 L Q E + + +TV ++ G L +++I T L + Sbjct 430 TRELAQQIEIEAKKFTIPLGFTVVSIVGGHSLEEQAYSLRNGAEIIIATPGRLVDCI--- 486 Query 115 EEEEHVELTVFSLIVVDECHH 135 E + L+ +++DE Sbjct 487 -ERRLLVLSQCCYVIMDEADR 506 >sp|P32892|DRS1_YEAST ATP-dependent RNA helicase DRS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DRS1 PE=1 SV=2 Length=752 Score = 113 bits (282), Expect = 1e-24, Method: Composition-based stats. Identities = 67/394 (17%), Positives = 127/394 (32%), Gaps = 52/394 (13%) Query 147 SQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNC--- 203 Q E + P + GL AS G S + A + L ++ + Sbjct 227 KQMYENFNSLSLSRPVLKGL-ASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAF 285 Query 204 -CPQLQEHSQQPCKQ--YNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQ 260 P ++ +P K + + + QI + G Q Sbjct 286 MIPIIERLLYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQ 345 Query 261 QVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQI 320 Q L + R + H+R + + +D + + ++ + + Sbjct 346 QEQMLKSRPDIVIATPGR-FIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMG 404 Query 321 LCAERRLLALFD----DRKNELAHLATHGPEN-----PKLEM------------------ 353 L R LF + L L+ P PK Sbjct 405 LLPSNRQNLLFSATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKP 464 Query 354 -LEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQS 412 L L R+ + R ++F +++AH L + + L+G Sbjct 465 ALLFNLIRKLDPTGQKRIVVFVARKETAHRLRIIMG--------------LLGMSVGELH 510 Query 413 THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR- 471 +TQ + + + KF++ + +L+ T +A GLDIP VV+ Y + + + GR Sbjct 511 GSLTQEQRLDSVNKFKNLEVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRT 570 Query 472 ARADQSVYAFVATEGSRELKRELINEALETLMEQ 505 ARA + + G R ++ A++++ E Sbjct 571 ARAGREGRSVTFV-GESSQDRSIVRAAIKSVEEN 603 Score = 51.7 bits (122), Expect = 2e-05, Method: Composition-based stats. Identities = 28/128 (22%), Positives = 47/128 (37%), Gaps = 9/128 (7%) Query 14 ALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA----KVVVLVNRVHLVTQHGEEFRR 69 AL GK+II TG+GKT A L +V+VL+ L Q + ++ Sbjct 265 ALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAKIASTRVIVLLPTRELAIQVADVGKQ 324 Query 70 MLDGRWTVTT--LSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSL 127 + +T G + R L D++I T + + + + Sbjct 325 IARFVSGITFGLAVGGLNLRQQEQMLKSRPDIVIATPGRFIDHIRNS---ASFNVDSVEI 381 Query 128 IVVDECHH 135 +V+DE Sbjct 382 LVMDEADR 389 >sp|A7A0P8|DRS1_YEAS7 ATP-dependent RNA helicase DRS1 OS=Saccharomyces cerevisiae (strain YJM789) OX=307796 GN=DRS1 PE=3 SV=1 Length=754 Score = 113 bits (282), Expect = 1e-24, Method: Composition-based stats. Identities = 67/394 (17%), Positives = 127/394 (32%), Gaps = 52/394 (13%) Query 147 SQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNC--- 203 Q E + P + GL AS G S + A + L ++ + Sbjct 229 KQMYENFNSLSLSRPVLKGL-ASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAF 287 Query 204 -CPQLQEHSQQPCKQ--YNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQ 260 P ++ +P K + + + QI + G Q Sbjct 288 MIPIIERLLYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQ 347 Query 261 QVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQI 320 Q L + R + H+R + + +D + + ++ + + Sbjct 348 QEQMLKSRPDIVIATPGR-FIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMG 406 Query 321 LCAERRLLALFD----DRKNELAHLATHGPEN-----PKLEM------------------ 353 L R LF + L L+ P PK Sbjct 407 LLPSNRQNLLFSATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKP 466 Query 354 -LEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQS 412 L L R+ + R ++F +++AH L + + L+G Sbjct 467 ALLFNLIRKLDPTGQKRIVVFVARKETAHRLRIIMG--------------LLGMSVGELH 512 Query 413 THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR- 471 +TQ + + + KF++ + +L+ T +A GLDIP VV+ Y + + + GR Sbjct 513 GSLTQEQRLDSVNKFKNLEVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRT 572 Query 472 ARADQSVYAFVATEGSRELKRELINEALETLMEQ 505 ARA + + G R ++ A++++ E Sbjct 573 ARAGREGRSVTFV-GESSQDRSIVRAAIKSVEEN 605 Score = 51.7 bits (122), Expect = 2e-05, Method: Composition-based stats. Identities = 28/128 (22%), Positives = 47/128 (37%), Gaps = 9/128 (7%) Query 14 ALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA----KVVVLVNRVHLVTQHGEEFRR 69 AL GK+II TG+GKT A L +V+VL+ L Q + ++ Sbjct 267 ALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAKIASTRVIVLLPTRELAIQVADVGKQ 326 Query 70 MLDGRWTVTT--LSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSL 127 + +T G + R L D++I T + + + + Sbjct 327 IARFVSGITFGLAVGGLNLRQQEQMLKSRPDIVIATPGRFIDHIRNS---ASFNVDSVEI 383 Query 128 IVVDECHH 135 +V+DE Sbjct 384 LVMDEADR 391 >sp|Q5R7D1|DDX42_PONAB ATP-dependent RNA helicase DDX42 OS=Pongo abelii OX=9601 GN=DDX42 PE=2 SV=1 Length=942 Score = 113 bits (282), Expect = 1e-24, Method: Composition-based stats. Identities = 53/276 (19%), Positives = 95/276 (34%), Gaps = 49/276 (18%) Query 253 FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRY-----NDALLIHDTVRAVDALAALQ 307 +G +Q L E A + R+ ++ L+ + R D Sbjct 361 YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDM----- 415 Query 308 DFYHREHVTKTQILCAERRLL--ALFDDRKNELAHLATHGPE----------NPKLEMLE 355 F ++ + + + LL A F + +LA P N + + Sbjct 416 GFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIV 475 Query 356 KIL-----------QRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI 404 +IL +R ++S ++F + +A L L+Q+ Sbjct 476 EILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQE-------------- 521 Query 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 G M Q ++ +VI F+ + +LVAT VA GLDIP V+ Y + + + Sbjct 522 GHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDT 581 Query 465 MVQARGR-ARADQSVYAF-VATEGSRELKRELINEA 498 GR RA + A+ + T +L+ Sbjct 582 HTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNL 617 Score = 61.0 bits (146), Expect = 3e-08, Method: Composition-based stats. Identities = 32/138 (23%), Positives = 52/138 (38%), Gaps = 15/138 (11%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT--RAAAYVA----KRHLETVDGAKVVVLVNRVHLV 60 Q + + AL G+++I TG+GKT + ++ LE DG V++ L Sbjct 280 QCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELC 339 Query 61 TQHGEE---FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE 117 Q E F + + R G M +A L ++++CT L + Sbjct 340 QQIHAEGKRFGKAYNLRSVAVYGGGSMWEQA--KALQEGAEIVVCTPGRLIDHVKKKATN 397 Query 118 EHVELTVFSLIVVDECHH 135 L S +V DE Sbjct 398 ----LQRVSYLVFDEADR 411 >sp|A4RK80|PRP28_PYRO7 Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Pyricularia oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 GN=PRP28 PE=3 SV=1 Length=674 Score = 112 bits (281), Expect = 1e-24, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 66/173 (38%), Gaps = 19/173 (11%) Query 347 ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA 406 E+ + L +L I+F T+ + ++ L+ A L G Sbjct 514 EDERRNKLRAMLNTY---GTGKLVIVFVNTKSNCDAVAKDLKSS------SFSAVTLHG- 563 Query 407 GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV 466 + TQ ++ +Q F+DG N+LVAT VA GLDIP ++V+ + + Sbjct 564 -------NKTQDQREAALQSFRDGRTNVLVATDVAARGLDIPDVSLVINFNMAGTIEVYT 616 Query 467 QARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQAE 517 GR RA + A + L ++ M + ++ +A+ Sbjct 617 HRIGRTGRAGKEGMAITFCGPEDHGVLYHLKQIMSKSQMSKVPPWLKDHPEAQ 669 Score = 59.4 bits (142), Expect = 8e-08, Method: Composition-based stats. Identities = 33/140 (24%), Positives = 53/140 (38%), Gaps = 15/140 (11%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLE---------TVDGAKVVVLVNRV 57 Q I AL+ +++I TG+GKT A ++E +G ++L Sbjct 284 QRAAIPIALQCRDLIGISKTGSGKTAAFVLPMLSYIEPLPPLNEVTKTEGPYALILAPTR 343 Query 58 HLVTQ-HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCH-DLLICTAELLQMALTSPE 115 L TQ E + +TV L G+ R ++++ T L L E Sbjct 344 ELATQIQAEVIKFATRMGFTVVCLIGNKRTIEEDAFALRNGAEIIVATPGRLVDCL---E 400 Query 116 EEEHVELTVFSLIVVDECHH 135 V L+ S +V+DE Sbjct 401 RHLLV-LSQCSYVVLDEADR 419 >sp|Q9NR30|DDX21_HUMAN Nucleolar RNA helicase 2 OS=Homo sapiens OX=9606 GN=DDX21 PE=1 SV=5 Length=783 Score = 112 bits (281), Expect = 1e-24, Method: Composition-based stats. Identities = 41/207 (20%), Positives = 80/207 (39%), Gaps = 19/207 (9%) Query 338 LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD 397 + HLA + ++ +++ S + R IIF T++ A L Sbjct 411 VEHLAIKCHWTQRAAVIGDVIRVY--SGHQGRTIIFCETKKEAQELSQ------------ 456 Query 398 IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG 457 I S + Q+ ++ ++ F++G+ +LVAT+VA GLDIP ++V++ Sbjct 457 ---NSAIKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSS 513 Query 458 LLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALE-TLMEQAVAAVQKMDQ 515 + S + GR RA ++ + E + + + V + ++ + Sbjct 514 PPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIK 573 Query 516 AEYQAKIRDLQQAALTKRAAQAAQREN 542 A + IR L T + E Sbjct 574 ASSKDAIRLLDSVPPTAISHFKQSAEK 600 Score = 54.0 bits (128), Expect = 4e-06, Method: Composition-based stats. Identities = 30/133 (23%), Positives = 56/133 (42%), Gaps = 12/133 (9%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKR-HLETVDGAK-----VVVLVNRVHL 59 Q + GK++I TG GKT + A + ++ H E D + V+VL L Sbjct 213 QAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLHGELQDRKRGRAPQVLVLAPTREL 272 Query 60 VTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 Q ++F + + +V G F + D+L+ T ++ + + + Sbjct 273 ANQVSKDFSDITK-KLSVACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHIQNGK---- 327 Query 120 VELTVFSLIVVDE 132 ++LT +V+DE Sbjct 328 LDLTKLKHVVLDE 340 >sp|Q40468|IF415_TOBAC Eukaryotic initiation factor 4A-15 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 Length=413 Score = 110 bits (274), Expect = 1e-24, Method: Composition-based stats. Identities = 34/201 (17%), Positives = 74/201 (37%), Gaps = 20/201 (10%) Query 315 VTKTQILCAERRLLALFDDRKNELAHLATH-GPENPKLEMLEKILQRQFSSSNSPRGIIF 373 +T+ + R L+ + + + E KLE L + + + + +IF Sbjct 230 ITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDL----YETLAITQSVIF 285 Query 374 TRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN 433 TR+ L ++ + S+ M Q + ++++F+ G+ Sbjct 286 VNTRRKVDWLTDKMRSRD--------------HTVSATHGDMDQNTRDIIMREFRSGSSR 331 Query 434 LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKR 492 +L+ T + G+D+ ++V+ + L T + + GR R + A E Sbjct 332 VLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERML 391 Query 493 ELINEALETLMEQAVAAVQKM 513 I ++E+ A V + Sbjct 392 SDIQRFYNVVIEELPANVADL 412 >sp|A6RJA2|PRP28_BOTFB Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Botryotinia fuckeliana (strain B05.10) OX=332648 GN=prp28 PE=3 SV=2 Length=817 Score = 113 bits (282), Expect = 1e-24, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 79/191 (41%), Gaps = 19/191 (10%) Query 332 DDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQ 391 + + + E+ + + L +IL S +P I+F +++ ++ ++ Sbjct 621 EAVETVEQRVEFVAGEDKRKKRLNEILA---SGEFAPPIIVFVNIKRNCDAVARDIKH-- 675 Query 392 GLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN 451 +G + + TQ ++ + + G N+LVAT +A G+D+P + Sbjct 676 ------------MGFTSVTLHGSKTQEQREAALASVRSGATNVLVATDLAGRGIDVPDVS 723 Query 452 VVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAA 509 +VV + + TN S GR RA +S A + +L ++ + + Sbjct 724 LVVNFNMATNIESYTHRIGRTGRAGKSGVAITFLGNEDSDTMYDLKQMLTKSSISRVPEE 783 Query 510 VQKMDQAEYQA 520 ++K + A+ ++ Sbjct 784 LRKHEAAQQKS 794 Score = 59.8 bits (143), Expect = 6e-08, Method: Composition-based stats. Identities = 27/140 (19%), Positives = 47/140 (34%), Gaps = 16/140 (11%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT---------RAAAYVAKRHLETVDGAKVVVLVNRV 57 Q I AL+ +++I TG+GKT + DG ++L Sbjct 407 QRAAIPIALQARDLIGVAVTGSGKTAAFLLPLLVYISELPPLNEFTKNDGPYAIILAPTR 466 Query 58 HLVTQHGEEFRR--MLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE 115 L Q E + +T ++ G +L +++I T L + Sbjct 467 EL-AQQIEVEAKKFATPLGFTCVSIVGGHSLEEQSYNLRNGAEIIIATPGRLVDCI---- 521 Query 116 EEEHVELTVFSLIVVDECHH 135 E + L I++DE Sbjct 522 ERRVLVLGQCCYIIMDEADR 541 >sp|P41379|IF4A2_NICPL Eukaryotic initiation factor 4A-2 OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1 Length=413 Score = 110 bits (274), Expect = 2e-24, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 76/201 (38%), Gaps = 20/201 (10%) Query 315 VTKTQILCAERRLLALFDDRKNELAHLATH-GPENPKLEMLEKILQRQFSSSNSPRGIIF 373 +T+ + R L+ + + + E KLE L + + + + +IF Sbjct 230 ITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDL----YETLAITQSVIF 285 Query 374 TRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN 433 TR+ L ++ + S+ M Q + ++++F+ G+ Sbjct 286 VNTRRKVDWLTDKMRSRD--------------HTVSATHGDMDQNTRDIIMREFRSGSSR 331 Query 434 LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKR 492 +L+ T + G+D+ ++V+ Y L T + + GR R + A + E Sbjct 332 VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINSVTKDDERML 391 Query 493 ELINEALETLMEQAVAAVQKM 513 I + ++E+ A V + Sbjct 392 FDIQKFYNVVIEELPANVADL 412 >sp|Q9JIK5|DDX21_MOUSE Nucleolar RNA helicase 2 OS=Mus musculus OX=10090 GN=Ddx21 PE=1 SV=3 Length=851 Score = 112 bits (281), Expect = 2e-24, Method: Composition-based stats. Identities = 42/213 (20%), Positives = 78/213 (37%), Gaps = 19/213 (9%) Query 332 DDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQ 391 + HLA + ++ +++ S + R IIF T++ A L Sbjct 477 QKAAITVEHLAIKCHWTERAAVIGDVIRVY--SGHQGRTIIFCETKKDAQELSQ------ 528 Query 392 GLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN 451 I S + Q+ ++ ++ F++G +LVAT+VA GLDIP + Sbjct 529 ---------NTCIKQDAQSLHGDIPQKQREITLKGFRNGNFGVLVATNVAARGLDIPEVD 579 Query 452 VVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAA 509 +VV+ + S + GR RA ++ ++ +A V + Sbjct 580 LVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQNKEEYQLAQVEQKAGIKFKRIGVPS 639 Query 510 VQKMDQAEYQAKIRDLQQAALTKRAAQAAQREN 542 ++ +A + IR L T + E Sbjct 640 ATEIIKASSKDAIRLLDSVPPTAISHFKQSAEK 672 Score = 51.7 bits (122), Expect = 2e-05, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 54/133 (41%), Gaps = 12/133 (9%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRH---LETVDGAK---VVVLVNRVHL 59 Q + GK++I TG GKT + A + ++ L+ + V+VL L Sbjct 285 QAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLQGGLQERKRGRAPQVLVLAPTREL 344 Query 60 VTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 Q ++F + + +V G + D+L+ T ++ L + + Sbjct 345 ANQVSKDFSDITK-KLSVACFYGGTPYGGQIERMRSGIDILVGTPGRIKDHLQNGK---- 399 Query 120 VELTVFSLIVVDE 132 ++LT +V+DE Sbjct 400 LDLTKLKHVVLDE 412 >sp|P23394|PRP28_YEAST Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=PRP28 PE=1 SV=2 Length=588 Score = 112 bits (279), Expect = 2e-24, Method: Composition-based stats. Identities = 68/401 (17%), Positives = 132/401 (33%), Gaps = 74/401 (18%) Query 143 NVIMSQYLELKLQRAQ-PLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQ 201 N+I L + +Q + P P +P + T + Sbjct 178 NIIPRDLLRVIIQELRFPSP-------TPIQRITIPNVCNMKQYRDFLGVASTGSGKTLA 230 Query 202 NCCPQLQEHSQQP-----CKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKF--- 253 P L + S+ P K + P +L++++ + ++ + Sbjct 231 FVIPILIKMSRSPPRPPSLKIIDGPKALILAPTRELVQQIQKETQKVTKIWSKESNYDCK 290 Query 254 -----GTQMYEQQVVKLSEAAALAGLQEQRVYA-----LHLRRYNDALLIHDTVRAVDAL 303 G E+ LSE + R+ L + + + L++ + + +D Sbjct 291 VISIVGGHSLEEISFSLSEGCDILVATPGRLIDSLENHLLVMKQVETLVLDEADKMIDLG 350 Query 304 AALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENP-------------- 349 Q V R+ L + +A + P Sbjct 351 FEDQVTNILTKVDINADSAVNRQTLMFTATMTPVIEKIAAGYMQKPVYATIGVETGSEPL 410 Query 350 -------------KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTV 396 K + L+ I+ + P IIF +Q+A L Q++ Sbjct 411 IQQVVEYADNDEDKFKKLKPIVAKY-----DPPIIIFINYKQTADWLAEKFQKE-----T 460 Query 397 DIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY 456 +++ +L G+ +Q ++ +Q F+ + +++AT+VA GLDIP+ ++VV + Sbjct 461 NMKVTILHGSK--------SQEQREHSLQLFRTNKVQIMIATNVAARGLDIPNVSLVVNF 512 Query 457 GLLTNEISMVQARGR-ARADQSVYA--FVATEGSRELKREL 494 + + GR RA A FV+ L REL Sbjct 513 QISKKMDDYIHRIGRTGRAANEGTAVSFVSAAEDESLIREL 553 Score = 52.9 bits (125), Expect = 8e-06, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 46/128 (36%), Gaps = 21/128 (16%) Query 23 WLPTGAGKTRAAAYVAKRH----------LETVDGAKVVVLVNRVHLVTQHGEEFRRMLD 72 TG+GKT A L+ +DG K ++L LV Q +E +++ Sbjct 220 VASTGSGKTLAFVIPILIKMSRSPPRPPSLKIIDGPKALILAPTRELVQQIQKETQKVTK 279 Query 73 GRW-------TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF 125 V ++ G L+ D+L+ T L +L E + + Sbjct 280 IWSKESNYDCKVISIVGGHSLEEISFSLSEGCDILVATPGRLIDSL----ENHLLVMKQV 335 Query 126 SLIVVDEC 133 +V+DE Sbjct 336 ETLVLDEA 343 >sp|Q7ZY47|DDX42_XENLA ATP-dependent RNA helicase DDX42 OS=Xenopus laevis OX=8355 GN=ddx42 PE=2 SV=1 Length=947 Score = 112 bits (281), Expect = 2e-24, Method: Composition-based stats. Identities = 59/299 (20%), Positives = 99/299 (33%), Gaps = 51/299 (17%) Query 234 KKLMDQIHDHLE------MPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRY 287 ++L QIH + +G +Q L E A + R+ ++ Sbjct 333 RELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKA 392 Query 288 -----NDALLIHDTVRAVD-------------------ALAALQDFYHREHVTKTQILCA 323 L+ + R D L F + IL Sbjct 393 TNLQRVTYLVFDEADRMFDMGFEYQVRSIANHVRPDRQTLLFSATFRKKIEKLARDILVD 452 Query 324 ERRLLALFDDRKNE-LAHLATHGPENP-KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAH 381 R++ NE + + P P K L + L +++ ++F + +A Sbjct 453 PIRVVQGDIGEANEDITQVVEILPSGPEKWTWLTRRLVEF---TSTGSVLVFVTKKANAE 509 Query 382 SLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVA 441 L L+Q LL G M Q ++ +VI F+ ++ +LVAT VA Sbjct 510 ELAANLRQDDHP------LGLLHG--------DMDQSERNKVISDFKKKSIPVLVATDVA 555 Query 442 EEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEA 498 GLDIP VV Y + + + GR RA + A+ + T +L+ Sbjct 556 ARGLDIPSIKTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTSKESNFAGDLVRNL 614 Score = 59.8 bits (143), Expect = 6e-08, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 52/138 (38%), Gaps = 15/138 (11%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTR-----AAAYVA-KRHLETVDGAKVVVLVNRVHLV 60 Q + I AL G+++I TG+GKT ++ ++ L+ DG V++ L Sbjct 277 QCQGIPVALSGRDMIGIAKTGSGKTAAFIWPILVHIMDQKELQPADGPIAVIVCPTRELC 336 Query 61 TQHGEEFRRMLDG---RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE 117 Q E +R R G M +A L ++++CT L + Sbjct 337 QQIHSECKRFGKAYNLRSVAVYGGGSMWEQA--KALQEGAEIVVCTPGRLIDHVKKKATN 394 Query 118 EHVELTVFSLIVVDECHH 135 L + +V DE Sbjct 395 ----LQRVTYLVFDEADR 408 >sp|A5AA68|DBP8_ASPNC ATP-dependent RNA helicase dbp8 OS=Aspergillus niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) OX=425011 GN=dbp8 PE=3 SV=1 Length=522 Score = 111 bits (277), Expect = 2e-24, Method: Composition-based stats. Identities = 44/195 (23%), Positives = 78/195 (40%), Gaps = 22/195 (11%) Query 352 EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ 411 E +L ++++ P IIF ++A L L++ +S Sbjct 333 EAFLHVLLSTEANASKP-AIIFCNHTKTADLLERMLRRLS--------------HRVTSL 377 Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 + + Q ++ + +F+ LLVAT VA GLDIP +VV + + N V GR Sbjct 378 HSLLPQSERNANLARFRASAARLLVATDVASRGLDIPSVELVVNFDVPRNPDDYVHRVGR 437 Query 472 -ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD--LQQA 528 ARA + + G R++ L A+E + + + + + +R L++ Sbjct 438 TARAGRKGESVTLV-GQRDVSLVL---AIEERVGRQMEEWSEEGVSVEGRVVRTGVLKEV 493 Query 529 ALTKRAAQAAQRENQ 543 KR A E + Sbjct 494 GEAKREAAGEIEEGR 508 Score = 52.9 bits (125), Expect = 8e-06, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 44/113 (39%), Gaps = 4/113 (4%) Query 26 TGAGKTRAAAYV--AKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTVTTL-SG 82 TG+GKT A V ++ E G +VL L Q E+ + + + L +G Sbjct 138 TGSGKT-IAFSVPMLQKWAEDPFGIFGLVLTPTRELALQIYEQIKAISAPQSMKPLLITG 196 Query 83 DMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH 135 R LA+ ++I T L + + + L ++V+DE Sbjct 197 GTDMRPQAVALAQRPHVVIATPGRLADHINTSGSDTIRGLKRVRMVVLDEADR 249 >sp|Q4P9P3|DRS1_USTMA ATP-dependent RNA helicase DRS1 OS=Ustilago maydis (strain 521 / FGSC 9021) OX=237631 GN=DRS1 PE=3 SV=1 Length=932 Score = 112 bits (281), Expect = 2e-24, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 81/199 (41%), Gaps = 17/199 (9%) Query 357 ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT 416 +L + + + + +IF R+++ AH L + L+G ++ Sbjct 601 LLLSLCTRTFTSQTMIFVRSKKLAHQLKIVFG--------------LLGLSAGELHGDLS 646 Query 417 QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARAD 475 Q + + + F+DG + L+AT +A GLDI V+ Y + + + GR ARA Sbjct 647 QEQRIDALTDFRDGKTDFLLATDLASRGLDIKGVQTVINYDMPGQFEAYLHRVGRTARAG 706 Query 476 QSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQA-EYQAKIRDLQQAALTKR 533 ++ A + E R + + I ++ ++ + E +++ A L + Sbjct 707 RNGRAVTLVGEADRRMLKLAIKKSSAEQIKHRIIPSAVAAHMCETLERLKPEVDAVLREE 766 Query 534 AAQAAQRENQRQQFPVEHV 552 + A R + + E++ Sbjct 767 KEEKALRIAEMELKKGENM 785 Score = 56.3 bits (134), Expect = 7e-07, Method: Composition-based stats. Identities = 30/141 (21%), Positives = 52/141 (37%), Gaps = 18/141 (13%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYV-AKRHLET--------VDGAKVVVLVNRV 57 Q I AL GK+I+ TG+GKT AA + L ++V++L Sbjct 360 QSRTIPIALAGKDIVAGAVTGSGKT-AAFMIPTIERLTWRAKTRTPHEAKSRVLILAPTR 418 Query 58 HLVTQHGEE---FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP 114 L Q + D R+ + G + ++ L +++I T L + + Sbjct 419 ELAIQCYSVGKSIAKFTDIRFCLCV--GGLSVKSQEAELKLRPEVVIATPGRLIDHVRNS 476 Query 115 EEEEHVELTVFSLIVVDECHH 135 L ++V+DE Sbjct 477 ---ASFTLDDIEILVMDEADR 494 >sp|Q7ZVA6|IF4A3_DANRE Eukaryotic initiation factor 4A-III OS=Danio rerio OX=7955 GN=eif4a3 PE=2 SV=1 Length=406 Score = 109 bits (273), Expect = 2e-24, Method: Composition-based stats. Identities = 28/165 (17%), Positives = 64/165 (39%), Gaps = 19/165 (12%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K + L + + + + +IF T++ L +++ S Sbjct 259 KFDTLCDL----YDTLTITQAVIFCNTKRKVDWLTEKMREAN--------------FTVS 300 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 S M Q++++ ++++F+ G +L++T V GLD+ ++++ Y L N + Sbjct 301 SMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVSQVSLIINYDLPNNRELYIHRI 360 Query 470 GR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM 513 GR R + A + I + T +++ V + Sbjct 361 GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADL 405 Score = 44.8 bits (104), Expect = 0.002, Method: Composition-based stats. Identities = 19/131 (15%), Positives = 39/131 (30%), Gaps = 10/131 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTR---AAAYVAKRHLETVDGAKVVVLVNRVHLVTQH 63 Q I ++G+++I +G GKT + V + ++L L Q Sbjct 60 QQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDI--QVRETQALILAPTRELAGQI 117 Query 64 GEEFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 + + D G L ++ T + + + Sbjct 118 QKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMI----RRRSLRT 173 Query 123 TVFSLIVVDEC 133 ++V+DE Sbjct 174 RAIKMLVLDEA 184 >sp|A4QYM6|DRS1_PYRO7 ATP-dependent RNA helicase DRS1 OS=Pyricularia oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 GN=DRS1 PE=3 SV=1 Length=790 Score = 112 bits (280), Expect = 2e-24, Method: Composition-based stats. Identities = 44/200 (22%), Positives = 83/200 (42%), Gaps = 20/200 (10%) Query 343 THGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL 402 G E ++ L + + ++ R IIF R ++ AH + Sbjct 480 RPGREEKRMGYLVYLCKNLYTE----RVIIFFRQKKIAHHARIIFG-------------- 521 Query 403 LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE 462 L+G + M+Q + + ++ F+DG ++ L+AT +A GLDI + V+ Y + Sbjct 522 LLGLSCAELHGSMSQIQRIQSVEAFRDGKVSFLLATDLASRGLDIKGVDTVINYEAPQSL 581 Query 463 ISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA 520 V GR ARA +S A +A E R++ + + + + + D +QA Sbjct 582 EIYVHRVGRTARAGRSGTAITLAAEPDRKVVKAAVKAGKAQGAKISSRIIDAADADSWQA 641 Query 521 KIRDLQQAALTKRAAQAAQR 540 KI +L+ + ++ Sbjct 642 KIDELEDEVEAVMREEKEEK 661 Score = 58.3 bits (139), Expect = 2e-07, Method: Composition-based stats. Identities = 36/214 (17%), Positives = 77/214 (36%), Gaps = 17/214 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHL----ETVDGAKVVVLVNRVHLVTQ 62 Q + I AL GK+++ TG+GKT A L + V ++VV+L L Q Sbjct 282 QSKTIPIALMGKDVVGGAVTGSGKTAAFVVPILERLLYRPKKVPTSRVVILAPTRELAIQ 341 Query 63 HGEE---FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 D ++ + G + + L D++I T + + Sbjct 342 CHAVATKLASHTDIKFCLAV--GGLSLKVQESELRLRPDVIIATPGRFIDHMRNS---AS 396 Query 120 VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLD 179 + ++V+DE +D + + L R L +A+ + + + Sbjct 397 FAVDTVEILVLDEADRMLEDGFADELNEILTTLPKSRQTML-----FSATMTSSVDNLIR 451 Query 180 GAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQ 213 +N ++L + +++ +L+ ++ Sbjct 452 VGLNKPVRLMVDSQKKTVVTLTQEFVRLRPGREE 485 >sp|A3LQW7|DBP2_PICST ATP-dependent RNA helicase DBP2 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) OX=322104 GN=DBP2 PE=3 SV=1 Length=530 Score = 111 bits (277), Expect = 2e-24, Method: Composition-based stats. Identities = 51/302 (17%), Positives = 100/302 (33%), Gaps = 52/302 (17%) Query 253 FGTQMYEQQVVKLSEAAALAGLQEQRVY------ALHLRRYNDALLIHDTVRAVDALAAL 306 +G QQ+ L+ + R+ +L+R L++ + R +D Sbjct 205 YGGAPKGQQIRDLARGVEIVIATPGRLIDMLEMGKTNLKR-VTYLVLDEADRMLDMGFEP 263 Query 307 QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGP-------------------- 346 Q R+ V + + A + LA P Sbjct 264 Q---IRKIVDQIRPDRQTLMWSATWPKEVQNLARDYLQDPIQVRIGSLELAASHTITQVV 320 Query 347 ----ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL 402 E K + L K L ++ + +IF T+++ + +L+ Sbjct 321 EVISEYEKRDRLVKHL-ETATTEKESKVLIFASTKKTCDEVTSYLRAD------------ 367 Query 403 LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE 462 G + Q ++ V+++F+ G ++VAT VA G+D+ N V+ + + N Sbjct 368 --GWPALAIHGDKQQSERDWVLREFKTGKSPIMVATDVAARGIDVKGINFVINFDMPGNI 425 Query 463 ISMVQAR--GRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA 520 V T+G+ +L +L E + +Q+ D+ + A Sbjct 426 EDYVHRIGRTGRGGATGTAVSFFTDGNNKLGGDLCKIMREA-KQTIPPELQRFDRKSFGA 484 Query 521 KI 522 I Sbjct 485 HI 486 Score = 56.3 bits (134), Expect = 6e-07, Method: Composition-based stats. Identities = 63/347 (18%), Positives = 120/347 (35%), Gaps = 44/347 (13%) Query 14 ALEGKNIIIWLPTGAGKTRA----AAYVA--KRHLETVDGAKVVVLVNRVHLVTQHGEEF 67 AL G++++ TG+GKT + A + L DG V+VL L Q +E Sbjct 131 ALSGRDMVGIAATGSGKTLSYCLPAIVHINAQPLLSPGDGPVVLVLAPTRELAVQIQQEC 190 Query 68 RRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS 126 + R T + G LAR +++I T L L E L + Sbjct 191 SKFGSSSRIRNTCVYGGAPKGQQIRDLARGVEIVIATPGRLIDML----EMGKTNLKRVT 246 Query 127 LIVVDECHHTHKDTVYNVIMSQYLELKLQR----AQPLPQVLGLTAS-PGTGGASKLDGA 181 +V+DE + ++ E ++++ +P Q L +A+ P D Sbjct 247 YLVLDEA---------DRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVQNLARDYL 297 Query 182 INHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIH 241 + + +L+ + + E+ ++ +L ++ L+ + Sbjct 298 QDPIQVRIGSLELAASHTITQVVEVISEYEKRDRLVKHLETATTEKESKVLIFASTKKTC 357 Query 242 DHLEMPELSRKFGT----------QMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDAL 291 D E+ R G Q V++ + + V A + Sbjct 358 D--EVTSYLRADGWPALAIHGDKQQSERDWVLREFKTGKSPIMVATDVAARGIDVKGINF 415 Query 292 LIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNEL 338 +I+ D ++D+ HR + +T A ++ F D N+L Sbjct 416 VIN-----FDMPGNIEDYVHR--IGRTGRGGATGTAVSFFTDGNNKL 455 >sp|A2QIL2|PRP28_ASPNC Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Aspergillus niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) OX=425011 GN=prp28 PE=3 SV=1 Length=810 Score = 112 bits (280), Expect = 2e-24, Method: Composition-based stats. Identities = 34/182 (19%), Positives = 76/182 (42%), Gaps = 19/182 (10%) Query 338 LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD 397 + E+ + + L IL S I+F +++ ++ ++Q Sbjct 622 EQRVEMIAGEDKRKKRLGDILS---SGEFRAPIIVFVNIKRNCDAIAREIKQW------- 671 Query 398 IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG 457 G + + TQ ++ + ++GT ++LVAT +A G+D+P ++VV + Sbjct 672 -------GFSSVTLHGSKTQDQREAALASVRNGTTDVLVATDLAGRGIDVPDVSLVVNFN 724 Query 458 LLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQ 515 + T+ S GR RA +S A ++ +L +++ + + ++K + Sbjct 725 MATSIESYTHRIGRTGRAGKSGVAITFLGNEDADVMYDLKQMLMKSPISRVPEELRKHEA 784 Query 516 AE 517 A+ Sbjct 785 AQ 786 Score = 60.2 bits (144), Expect = 4e-08, Method: Composition-based stats. Identities = 46/311 (15%), Positives = 101/311 (32%), Gaps = 47/311 (15%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT---------RAAAYVAKRHLETV--DGAKVVVLVN 55 Q I A++ +++I TG+GKT A E DG +VL Sbjct 399 QRAAIPIAMQNRDLIGVAVTGSGKTAAFLLPLLCYIAELPRIDEFEWRKADGPYAIVLAP 458 Query 56 RVHLVTQHGEEFRRMLDGR--WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTS 113 L Q E + G + V ++ G L +++I T L + Sbjct 459 TREL-AQQIEIEAKKFTGPLGFNVVSIVGGHSLEEQAYSLRDGAEIIIATPGRLVDCI-- 515 Query 114 PEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTG 173 E + L+ +++DE + L +P+ ++L A P + Sbjct 516 --ERRILVLSQCCYVIMDEADR---------------MIDLGFEEPVNKILD--ALPVSN 556 Query 174 GASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHS-QQPCKQYNLCHRRSQDPFGDL 232 + A N + + I Q+ Q ++ P + + + P Sbjct 557 EKPDSEDAENPLAM------SRHINHDQHRYRQTMMYTATMPTAVERIARKYLRRPAIVT 610 Query 233 LKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALL 292 + + + + E+ +++ +L + + + + ++++R DA+ Sbjct 611 IGSAGEAVDTVEQRVEMIA-----GEDKRKKRLGDILSSGEFRAPIIVFVNIKRNCDAIA 665 Query 293 IHDTVRAVDAL 303 ++ Sbjct 666 REIKQWGFSSV 676 >sp|P54509|YQHH_BACSU Uncharacterized ATP-dependent helicase YqhH OS=Bacillus subtilis (strain 168) OX=224308 GN=yqhH PE=3 SV=1 Length=557 Score = 111 bits (277), Expect = 2e-24, Method: Composition-based stats. Identities = 80/475 (17%), Positives = 164/475 (35%), Gaps = 83/475 (17%) Query 5 SYQWEVIMPALEGKNI--IIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ 62 +Q EV +E N I+ G GKT A + K ++ K+++LV LV+Q Sbjct 62 PHQLEVAQKVVEKMNGKAILADEVGLGKTVEAGLILKEYMIRGLAKKILILVP-ASLVSQ 120 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 +E + ++ D+++ + + + E V Sbjct 121 WVKELQEKFLIP----------AVEQKKSYVWEQCDIVVSSIDTAK----RSPHREIVLS 166 Query 123 TVFSLIVVDECHHT----HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKL 178 + L+++DE H K+ +++ +++ L LTA+P + Sbjct 167 IPYDLVIIDEAHKLKNSKTKNY-------EFVRNLVKKYC-----LLLTATP-------I 207 Query 179 DGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMD 238 I + L + L + S + + + + + DL+ K+M Sbjct 208 QNRIEEIFNLVSLLKPGHLGSQNHFQEEFAK---------KKSSLEAHEHLKDLVNKVMI 258 Query 239 QIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVR 298 + H + E + ++ + R D++ ++ Sbjct 259 RNRRHDTGLN------------WKQRHVETVPIQFSPSEQALYDEISRLKDSINKPASMF 306 Query 299 AVDAL--AALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEK 356 ++ L K + E++ A+ +D + L +N K + Sbjct 307 SIMTLQRECCSSREAVYMTLKKMLDQKEKQAPAIDEDTISVLIDRINQVTQNSKALQVVD 366 Query 357 ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT 416 ++++ + IIFT R + L W QQ G+ +V R G + + Sbjct 367 LIKKI-----DDKVIIFTEYRAT-QIYLQWFLQQNGISSVPFRGGFKRGKKDWMK----- 415 Query 417 QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 F+ G + +L+AT EG+++ CN ++ Y L N + + Q GR Sbjct 416 --------DLFR-GKIQVLIATEAGGEGINLQFCNHMINYDLPWNPMRLEQRIGR 461 >sp|Q3B8Q1|DDX21_RAT Nucleolar RNA helicase 2 OS=Rattus norvegicus OX=10116 GN=Ddx21 PE=2 SV=1 Length=782 Score = 112 bits (279), Expect = 2e-24, Method: Composition-based stats. Identities = 43/213 (20%), Positives = 80/213 (38%), Gaps = 19/213 (9%) Query 332 DDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQ 391 + HLA + ++ +++ S + R IIF T++ A L Sbjct 401 QKAAITVEHLAIKCHWTERAAVIGDVIRVY--SGHQGRTIIFCETKKDAQELSQ------ 452 Query 392 GLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN 451 I S + Q+ ++ ++ F++G +LVAT+VA GLDIP + Sbjct 453 ---------NTCIKQDAQSLHGDIPQKQREITLKGFRNGNFGVLVATNVAARGLDIPEVD 503 Query 452 VVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELK-RELINEALETLMEQAVAA 509 +VV+ + S + GR RA ++ + E + ++ +A V + Sbjct 504 LVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLAQVEQKAGIKFKRIGVPS 563 Query 510 VQKMDQAEYQAKIRDLQQAALTKRAAQAAQREN 542 ++ +A + IR L T E Sbjct 564 ATEIIKASSKDAIRLLDSVPPTAIGHFKQSAEK 596 Score = 51.3 bits (121), Expect = 2e-05, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 54/133 (41%), Gaps = 12/133 (9%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRH---LETVDGAK---VVVLVNRVHL 59 Q + GK++I TG GKT + A + ++ L+ + V+VL L Sbjct 209 QAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLQGGLQERKRGRAPQVLVLAPTREL 268 Query 60 VTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 Q ++F + + +V G + D+L+ T ++ L + + Sbjct 269 ANQVSKDFSDITK-KLSVACFYGGTPYGGQIERMRSGIDILVGTPGRIKDHLQNGK---- 323 Query 120 VELTVFSLIVVDE 132 ++LT +V+DE Sbjct 324 LDLTKLKHVVLDE 336 >sp|Q40471|IF4A9_TOBAC Eukaryotic initiation factor 4A-9 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 Length=413 Score = 109 bits (272), Expect = 2e-24, Method: Composition-based stats. Identities = 34/201 (17%), Positives = 74/201 (37%), Gaps = 20/201 (10%) Query 315 VTKTQILCAERRLLALFDDRKNELAHLATH-GPENPKLEMLEKILQRQFSSSNSPRGIIF 373 +T+ + R L+ + + + E KLE L + + + + +IF Sbjct 230 ITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDL----YETLAITQSVIF 285 Query 374 TRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN 433 TR+ L ++ + S+ M Q + ++++F+ G+ Sbjct 286 VNTRRKVDWLTDKMRSRD--------------HTVSATHGDMDQNTRDIIMREFRSGSSR 331 Query 434 LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKR 492 +L+ T + G+D+ ++V+ Y L T + + GR R + + E Sbjct 332 VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVSINFVTSDDERML 391 Query 493 ELINEALETLMEQAVAAVQKM 513 I ++E+ A V + Sbjct 392 SDIQRFYNVVIEELPANVADL 412 >sp|Q7FGZ2|RH1_ARATH DEAD-box ATP-dependent RNA helicase 1 OS=Arabidopsis thaliana OX=3702 GN=RH1 PE=2 SV=3 Length=522 Score = 111 bits (276), Expect = 3e-24, Method: Composition-based stats. Identities = 66/401 (16%), Positives = 121/401 (30%), Gaps = 55/401 (14%) Query 174 GASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLL 233 G S + G I+ +++ LD P + L+ + G L Sbjct 140 GQSSIAGEISQLIKT-PKLDAGICYDPDDLSQNLESAVDILVATPGRLMDHINNTKGFTL 198 Query 234 KKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLI 293 + L + D + + + Y+ + + + + ++ A Sbjct 199 EHLRYLVVD------ETDRLLREAYQSWLPTVLQLTQTSD---DSLFPSFTPFVPSAFGS 249 Query 294 HDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPEN----- 348 TVR + R K + L A ++L L H P Sbjct 250 LQTVR--------RQSVERGFKGKPYPRLVKMVLSATLTQDPSKLIQLDLHHPLFMTTGG 301 Query 349 ------PKLEMLEKI---------LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGL 393 KLE L I L S + IIFT + ++ L L Sbjct 302 SRYRLPEKLECLRLICETGMKPVYLVALLKSWEGEKCIIFTSSVETTRRLCKLLN---FF 358 Query 394 QTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV 453 I+A+ G + Q + + ++ F+ G + +LVA+ G+D+ V Sbjct 359 GDPKIKAKEYSG--------GLNQSLRSKELKAFRKGDIQVLVASDALTRGMDVKGVTNV 410 Query 454 VRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQK 512 + Y + + + GR ARA Q+ F + ++ LE + + Sbjct 411 INYDMPPFAKTFIHRAGRTARAGQAGRCFTLLSN---HEVRRFSKLLEKVGSDSCPIYPI 467 Query 513 MDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQ 553 + IR AL K ++ + H Sbjct 468 PPTS--LDSIRATYTPALEKLKELVESEAPKKGRQAFRHNS 506 Score = 45.9 bits (107), Expect = 0.001, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 49/137 (36%), Gaps = 27/137 (20%) Query 20 IIIWLPTGAGKTRAAAYVAKRHLETVDGA--KVVVLVNRVHLVTQHGEEFRRMLDG---- 73 I + PTG+GKT + A + L + + +V++ L Q + F + Sbjct 75 ICVNSPTGSGKTLSYALPIVQLLASRPVRCLRALVVLPTRDLALQVKDVFDAIAPAVGLS 134 Query 74 ---RWTVTTLSGDMG---------------PRAGFGHLARCHDLLICTAELLQMALTSPE 115 ++++G++ P +L D+L+ T L + + + Sbjct 135 VGSAVGQSSIAGEISQLIKTPKLDAGICYDPDDLSQNLESAVDILVATPGRLMDHINNTK 194 Query 116 EEEHVELTVFSLIVVDE 132 L +VVDE Sbjct 195 G---FTLEHLRYLVVDE 208 >sp|Q40470|IF4A7_TOBAC Eukaryotic initiation factor 4A-7 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 Length=413 Score = 109 bits (272), Expect = 3e-24, Method: Composition-based stats. Identities = 36/201 (18%), Positives = 74/201 (37%), Gaps = 20/201 (10%) Query 315 VTKTQILCAERRLLALFDDRKNELAHLATH-GPENPKLEMLEKILQRQFSSSNSPRGIIF 373 +T+ + R L+ D + + E KLE L + + + + +IF Sbjct 230 ITRKFMNKPVRILVKRDDVTLEGIKQFYVNVDKEEWKLETLCDL----YETLAITQSVIF 285 Query 374 TRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN 433 TR+ L ++ + S+ M Q + ++++F+ G+ Sbjct 286 VNTRRKVDWLTDKMRTRD--------------HTVSATHGDMDQNTRDIIMREFRSGSSR 331 Query 434 LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKR 492 +L+ T + G+D+ ++V+ Y L T + + GR R + A E Sbjct 332 VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVIKDDERML 391 Query 493 ELINEALETLMEQAVAAVQKM 513 I ++E+ A V + Sbjct 392 SDIQRFYNVVIEELPANVADL 412 >sp|Q55D61|IF4A_DICDI Eukaryotic initiation factor 4A OS=Dictyostelium discoideum OX=44689 GN=tifA PE=3 SV=1 Length=405 Score = 109 bits (271), Expect = 3e-24, Method: Composition-based stats. Identities = 34/196 (17%), Positives = 76/196 (39%), Gaps = 20/196 (10%) Query 314 HVTKTQILCAERRLLALFDDRKNELA-HLATHGPENPKLEMLEKILQRQFSSSNSPRGII 372 +T+ + R LL + + + + E+ K L I + S + +I Sbjct 221 SMTEKFMTKPVRILLKRDELTLDGIKQFFVSVEKEDWKFGTLCDI----YDSLTITQAVI 276 Query 373 FTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTL 432 F T++ L + ++ + + G M Q++++E+I+ F+ G Sbjct 277 FCNTKKKVDQLT------EQMRDANFTVASMHG--------DMVQKEREEIIKSFRSGEN 322 Query 433 NLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELK 491 +L+ T + G+D+ ++V+ Y L + + + GR R + A + S Sbjct 323 RVLITTDILARGIDVQQVSLVINYDLPIDRENYIHRIGRSGRFGRKGVAINFVKNSDIRI 382 Query 492 RELINEALETLMEQAV 507 I + T +++ Sbjct 383 LRDIEQFYSTQIDEMP 398 Score = 42.9 bits (99), Expect = 0.008, Method: Composition-based stats. Identities = 22/131 (17%), Positives = 40/131 (31%), Gaps = 10/131 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTR---AAAYVAKRHLETVDGAKVVVLVNRVHLVTQ- 62 Q I+P ++G++ I +G GKT A V +V++L L Q Sbjct 59 QQRAILPIIKGRDTIAQAQSGTGKTATFSIGALQCVEV--NVRSPQVLILSPTRELAQQI 116 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 V G L ++ T + +T + Sbjct 117 QKVALALSEFMNIQVHACVGGKNLSDDVKKLETGVHIVSGTPGRVLDMITRKS----LPT 172 Query 123 TVFSLIVVDEC 133 ++++DE Sbjct 173 RHIKMMILDEA 183 >sp|Q9VHS8|IF4A3_DROME Eukaryotic initiation factor 4A-III OS=Drosophila melanogaster OX=7227 GN=CG7483 PE=1 SV=1 Length=399 Score = 109 bits (271), Expect = 3e-24, Method: Composition-based stats. Identities = 29/165 (18%), Positives = 63/165 (38%), Gaps = 19/165 (12%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K + L + + + + +IF T++ L +++ S Sbjct 252 KFDTLCDL----YDTLTITQAVIFCNTKRKVDWLTEKMREAN--------------FTVS 293 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 S M Q+++ E++++F+ G +L+ T V G+D+ ++V+ Y L N + Sbjct 294 SMHGDMPQKERDEIMKEFRAGQSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRI 353 Query 470 GR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM 513 GR R + A + I + T +++ V + Sbjct 354 GRSGRFGRKGVAINFVKSDDIRILRDIEQYYSTQIDEMPMNVADL 398 Score = 42.1 bits (97), Expect = 0.014, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 45/129 (35%), Gaps = 6/129 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q I P ++G+++I +G GKT + + + T+ +V+ L L Q + Sbjct 53 QQRSITPIVKGRDVIAQAQSGTGKTATFSISILQSLDTTLRETQVLCLSPTRELAVQIQK 112 Query 66 EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 + D + G L ++ T + + + + Sbjct 113 VILALGDMMNVQCHVCIGGTNLGEDIRKLDYGQHIVSGTPGRVFDMI----KRRVLRTRA 168 Query 125 FSLIVVDEC 133 ++V+DE Sbjct 169 IKMLVLDEA 177 >sp|P0C2N8|DRS1_NEUCR ATP-dependent RNA helicase drs1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=drh-11 PE=3 SV=1 Length=829 Score = 112 bits (279), Expect = 3e-24, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 67/157 (43%), Gaps = 20/157 (13%) Query 343 THGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL 402 G E+ + L I + ++ R IIF R ++ AH + + + Sbjct 518 RPGRESKREGYLLHICKTIYTE----RVIIFFRQKKIAHKMRII------FGLFGLSCAE 567 Query 403 LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE 462 L G+ M Q + + ++ F+DG +N L+AT +A GLDI + V+ Y Sbjct 568 LHGS--------MNQAQRIQSVEDFRDGKVNFLLATDLASRGLDIKGVDTVINYEAPQTP 619 Query 463 ISMVQARGR-ARADQSVYAF-VATEGSRELKRELINE 497 V GR ARA +S A +A E R++ + + Sbjct 620 EIYVHRVGRTARAGRSGTAITLAAEPDRKVVKAAVKA 656 Score = 54.4 bits (129), Expect = 3e-06, Method: Composition-based stats. Identities = 22/117 (19%), Positives = 39/117 (33%), Gaps = 12/117 (10%) Query 26 TGAGKTRAAAYVAKRHL----ETVDGAKVVVLVNRVHLVTQHGEE---FRRMLDGRWTVT 78 TG+GKT A L + V +VV+L L Q D ++ + Sbjct 339 TGSGKTAAFVVPILERLLYRPKKVPTTRVVILTPTRELAIQCHAVAVKLASHTDIKFCLA 398 Query 79 TLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH 135 G + + L D++I T + + + ++V+DE Sbjct 399 V--GGLSLKVQEAELRLRPDVVIATPGRFIDHMRNS---ASFAVDTIEILVLDEADR 450 >sp|Q9LU46|RH35_ARATH DEAD-box ATP-dependent RNA helicase 35 OS=Arabidopsis thaliana OX=3702 GN=RH35 PE=2 SV=1 Length=591 Score = 111 bits (276), Expect = 3e-24, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 68/175 (39%), Gaps = 21/175 (12%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ L + LQ+ SP +IF + + +L LL G Sbjct 385 KIVYLLECLQK-----TSPPVLIFCENKADVDDIHEYL--------------LLKGVEAV 425 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q D++ I F+ G ++LVAT VA +GLD P V+ Y + + V Sbjct 426 AIHGGKDQEDREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRI 485 Query 470 GR-ARADQSVYAFVATEGSRELKREL-INEALETLMEQAVAAVQKMDQAEYQAKI 522 GR R ++ A ++ L + L+ ++ + +++ +A+ Sbjct 486 GRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEEAET 540 Score = 42.9 bits (99), Expect = 0.009, Method: Composition-based stats. Identities = 37/255 (15%), Positives = 72/255 (28%), Gaps = 33/255 (13%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAY--VAKRHLETV---------DGAKVVVLVN 55 Q + + L G+++I TG+GKT + E + +V Sbjct 173 QVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIV--CP 230 Query 56 RVHLVTQHGEEFRRMLD-------GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQ 108 L Q E + + G + R+ + R +++ T L+ Sbjct 231 SRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGVHIVVATPGRLK 290 Query 109 MALTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLP------- 161 L + + L + +DE + I + K QR L Sbjct 291 DMLAKKK----MSLDACRYLTLDEADRLVDLGFEDDIREVFDHFKSQRQTLLFSATMPTK 346 Query 162 -QVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNL 220 Q+ +A + A L + ++ + + + + P + Sbjct 347 IQIFARSA-LVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTSPPVLIFCE 405 Query 221 CHRRSQDPFGDLLKK 235 D LL K Sbjct 406 NKADVDDIHEYLLLK 420 >sp|Q650T9|RH7_ORYSJ DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0520700 PE=2 SV=1 Length=696 Score = 111 bits (277), Expect = 4e-24, Method: Composition-based stats. Identities = 56/264 (21%), Positives = 100/264 (38%), Gaps = 34/264 (13%) Query 317 KTQILCAERRLLALFDDRK----NELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGII 372 + L + ++ + L D K + HLA + +++ I++ S R II Sbjct 318 SLRFLKSGKKTVDLVGDEKLKASASVRHLALPCNRAARAQVIPDIIRCY---SRGGRTII 374 Query 373 FTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTL 432 FT T++SA L + AG+ + + Q ++ ++ F+ G Sbjct 375 FTETKESASDLSGLI------------------AGSRALHGDVAQAQREVILAGFRSGKF 416 Query 433 NLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELK 491 +LVAT+VA GLDI ++++ + + + GR RA + A + E + Sbjct 417 LVLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLFEPRYKFN 476 Query 492 RELINEA----LETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQF 547 I E + V + E I + + + QA Q N Sbjct 477 VNRIERESGVKFEHISAPQPTDVAQSAGTEAAEAISSVSDSVIPVFREQAEQLLNSSGMS 536 Query 548 PVEHVQLLCINCMVAVGHGSDLRK 571 V+ LL AVG+ D++K Sbjct 537 AVD---LLAKALAKAVGYT-DIKK 556 Score = 42.9 bits (99), Expect = 0.011, Method: Composition-based stats. Identities = 25/139 (18%), Positives = 47/139 (34%), Gaps = 16/139 (12%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHL--------ETVDGAK---VVVLVN 55 Q L+G +++ TG GKT A L D + V+VL+ Sbjct 142 QATTFDLVLDGHDLVGRARTGQGKTLAFVLPILESLVNGTHKASRRTDYGRPPTVLVLLP 201 Query 56 RVHLVTQHGEEFRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP 114 L Q +F + + G R+ + + D+++ T ++ + Sbjct 202 TRELAKQVHTDFAFYGATFGLSACCVYGGSDYRSQEMAIRKGVDIVVGTPGRVKDFV--- 258 Query 115 EEEEHVELTVFSLIVVDEC 133 E+ + V+DE Sbjct 259 -EKGTLNFRSLKFRVLDEA 276 >sp|Q5F485|DDX42_CHICK ATP-dependent RNA helicase DDX42 OS=Gallus gallus OX=9031 GN=DDX42 PE=2 SV=1 Length=944 Score = 112 bits (279), Expect = 4e-24, Method: Composition-based stats. Identities = 56/299 (19%), Positives = 97/299 (32%), Gaps = 51/299 (17%) Query 234 KKLMDQIHDHLE------MPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRY 287 ++L QIH + +G +Q L E A + R+ ++ Sbjct 336 RELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKA 395 Query 288 -----NDALLIHDTVRAVD-------------------ALAALQDFYHREHVTKTQILCA 323 L+ + R D L F + IL Sbjct 396 TNLQRVTYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILID 455 Query 324 ERRLLALFDDRKNE-LAHLATHGPENP-KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAH 381 R++ NE + + P P K L + L ++S ++F + +A Sbjct 456 PIRVVQGDIGEANEDVTQIVEIFPSGPSKWNWLTRRLVEF---TSSGSVLLFVTKKANAE 512 Query 382 SLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVA 441 L L+Q+ M Q ++ +VI +F+ + +LVAT VA Sbjct 513 ELANNLKQED--------------HNLGLLHGDMDQSERNKVISEFKKKGIPILVATDVA 558 Query 442 EEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEA 498 GLDIP V+ Y + + + GR RA + A+ + T +L+ Sbjct 559 ARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNL 617 Score = 62.5 bits (150), Expect = 1e-08, Method: Composition-based stats. Identities = 30/138 (22%), Positives = 51/138 (37%), Gaps = 15/138 (11%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT--RAAAYVA----KRHLETVDGAKVVVLVNRVHLV 60 Q + + A+ G+++I TG+GKT + ++ LE DG V++ L Sbjct 280 QCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELC 339 Query 61 TQHGEEFRRMLDG---RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE 117 Q E +R R G M +A L ++++CT L + Sbjct 340 QQIHSECKRFGKAYNLRSVAVYGGGSMWEQA--KALQEGAEIVVCTPGRLIDHVKKKATN 397 Query 118 EHVELTVFSLIVVDECHH 135 L + +V DE Sbjct 398 ----LQRVTYLVFDEADR 411 >sp|Q75F95|DRS1_EREGS ATP-dependent RNA helicase DRS1 OS=Eremothecium gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=DRS1 PE=3 SV=1 Length=734 Score = 111 bits (277), Expect = 5e-24, Method: Composition-based stats. Identities = 44/215 (20%), Positives = 85/215 (40%), Gaps = 22/215 (10%) Query 333 DRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQG 392 K + E+ K +L +L R+ S+ R ++F ++ AH L + L Sbjct 434 ANKLTQEFVRLRKREHLKPALLYHLL-RKLDSTGQKRIVVFVARKEVAHRLRVILG---- 488 Query 393 LQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNV 452 L+G +TQ + + + F+ + +LV T +A GLDIP V Sbjct 489 ----------LLGMKAGELHGSLTQEQRLQSVNNFKSLDVPVLVCTDLASRGLDIPKIEV 538 Query 453 VVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETL-----MEQA 506 V+ Y + + GR ARA + + G +R ++ +A++++ +A Sbjct 539 VINYDMPKTYEIYLHRVGRTARAGREGKSVTLV-GESTQERSIVKDAIKSVDGSKGSGRA 597 Query 507 VAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRE 541 V Q E K+ ++ + + + Q + Sbjct 598 CGRVVDWKQVEEIHKLVQAKEDVIGEILEEEKQEK 632 Score = 54.4 bits (129), Expect = 3e-06, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 47/128 (37%), Gaps = 9/128 (7%) Query 14 ALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA----KVVVLVNRVHLVTQHGEEFRR 69 AL GK++I TG+GKT A L +V+VL L Q + ++ Sbjct 253 ALLGKDVIAGAVTGSGKTAAFMIPIIERLLYKPAKIASTRVLVLTPTRELAIQVADVGKK 312 Query 70 MLDGRWTVTT--LSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSL 127 + +T G + R L D++I T + + + + + Sbjct 313 LGKFVSGLTFGLAVGGLNLRQQEQALKLRPDIVIATPGRIIDHIRNS---ASFSVDSVEV 369 Query 128 IVVDECHH 135 +V+DE Sbjct 370 LVIDEADR 377 >sp|Q4PDT1|DBP3_USTMA ATP-dependent RNA helicase DBP3 OS=Ustilago maydis (strain 521 / FGSC 9021) OX=237631 GN=DBP3 PE=3 SV=1 Length=585 Score = 110 bits (275), Expect = 5e-24, Method: Composition-based stats. Identities = 37/184 (20%), Positives = 66/184 (36%), Gaps = 22/184 (12%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K L L+ + + + +IF ++ A + L++ G S Sbjct 403 KERRLNDFLRSVNAQRSKDKILIFALYKKEAQRIEQTLRRG--------------GFKVS 448 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q ++ +++F+ LLVAT VA GLDIP+ VV Y V Sbjct 449 GIHGDLGQNERIASLERFKSAETPLLVATDVAARGLDIPNVEHVVNYTFPLTIEDYVHRI 508 Query 470 GRARADQSVY--AFVATEGSRELKRELI------NEALETLMEQAVAAVQKMDQAEYQAK 521 GR TE + ELI ++ + + + ++K + Y Sbjct 509 GRTGRGGKTGKSLTFFTEMDKAHAGELIRVLKDADQKVPDALTKFPTTIKKKTHSSYGDH 568 Query 522 IRDL 525 ++L Sbjct 569 FKEL 572 Score = 46.3 bits (108), Expect = 8e-04, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 49/138 (36%), Gaps = 22/138 (16%) Query 15 LEGKNIIIWLPTGAGKTRAAA-------YVAKRHLETVDGAK-------VVVLVNRVHLV 60 L+ K+++ TG+GKT A V K + K V+V+ L Sbjct 194 LQNKDVVGIAETGSGKTF-AFGLPALQHLVTKHKVLDSGKKKAKGAQVNVLVIAPTRELA 252 Query 61 TQHGEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARC--HDLLICTAELLQMALTSPEEE 117 Q E ++ + L G + + L + +++ T + + Sbjct 253 IQTEENMAKLGKSMGIGMICLYGGVSKQEQVRLLNQSPPVRIVVGTPGRVLDM----ARD 308 Query 118 EHVELTVFSLIVVDECHH 135 ++L+ + +V+DE Sbjct 309 GSLDLSGVTYLVLDEADR 326 >sp|Q6C347|FAL1_YARLI ATP-dependent RNA helicase FAL1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=FAL1 PE=3 SV=1 Length=397 Score = 108 bits (269), Expect = 5e-24, Method: Composition-based stats. Identities = 29/165 (18%), Positives = 60/165 (36%), Gaps = 19/165 (12%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K + L + + + + +IF T++ L ++ Sbjct 250 KFDTLCDL----YDTLTITQAVIFCNTKKKVDWLTQQMKDNNFTVC-------------- 291 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 S M Q+D+ ++ +F+ G +L++T V G+D+ ++V+ Y L N + + Sbjct 292 SMHGDMAQKDRDSIMNEFRSGRSRVLISTDVWARGIDVQQVSLVINYDLPPNRENYIHRI 351 Query 470 GR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM 513 GR R + A I + T +++ V M Sbjct 352 GRSGRFGRKGVAINFATNDDITTLRDIEQYYSTQIDEMPVNVTDM 396 Score = 48.6 bits (114), Expect = 1e-04, Method: Composition-based stats. Identities = 20/129 (16%), Positives = 41/129 (32%), Gaps = 6/129 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETV-DGAKVVVLVNRVHLVTQHGE 65 Q I ++G++ I +G GKT + ++T + +VL L TQ Sbjct 51 QSRAITQIIKGRDTIAQAQSGTGKTATFSISMLEVIDTKHRETQAMVLSPTRELATQIQS 110 Query 66 EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 + D G L ++ T + ++ + Sbjct 111 VILALGDYMNVQCHACIGGTSLSVDMKKLEAGQQVVSGTPGRCLDMI----KKGCLRTKN 166 Query 125 FSLIVVDEC 133 ++++DE Sbjct 167 LKMLILDEA 175 >sp|A7TJM9|DRS1_VANPO ATP-dependent RNA helicase DRS1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 GN=DRS1 PE=3 SV=1 Length=752 Score = 111 bits (277), Expect = 5e-24, Method: Composition-based stats. Identities = 40/232 (17%), Positives = 85/232 (37%), Gaps = 32/232 (14%) Query 336 NELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQT 395 E + P L L R+ + R ++F ++ AH L + L Sbjct 451 QEFVRIRKRDHLKP---ALLFYLIRKLDGTGQKRIVVFVARKEMAHKLRIILG------- 500 Query 396 VDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVR 455 L+G +TQ + + + F+ + +L+ T +A GLDIP VV+ Sbjct 501 -------LLGMKVGELHGSLTQEQRLQSVNNFKSLEVPVLICTDLASRGLDIPKIEVVIN 553 Query 456 YGLLTNEISMVQARGR-ARADQSVYAFVA---TEGSRELKRELINEALETLMEQA----- 506 + + + + GR ARA + + + R + R I E+ + Sbjct 554 FDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDRSIVRSAIKSVEESSSKNKAVSRN 613 Query 507 -----VAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQ 553 + K+ ++ + I D+ ++ A+ + ++ + ++H + Sbjct 614 VEWTQIEETNKLVES-FGETIDDILVEEKQEKEILRAEMQLRKGENMIKHKK 664 Score = 53.3 bits (126), Expect = 6e-06, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 45/128 (35%), Gaps = 9/128 (7%) Query 14 ALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA----KVVVLVNRVHLVTQHGEEFRR 69 L GK+II TG+GKT A L +V+VL L Q + ++ Sbjct 265 GLSGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAKVASTRVIVLTPTRELAIQIADVGKK 324 Query 70 MLDGRWTVTT--LSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSL 127 + +T G + R L D++I T + + + + Sbjct 325 IGKYVSGLTFGLAVGGLNLRQQEQELKTRPDIVIATPGRFIDHVRNS---SSFNVDSVEV 381 Query 128 IVVDECHH 135 +V+DE Sbjct 382 LVMDEADR 389 >sp|Q6CJV1|DRS1_KLULA ATP-dependent RNA helicase DRS1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=DRS1 PE=3 SV=1 Length=748 Score = 111 bits (277), Expect = 5e-24, Method: Composition-based stats. Identities = 37/176 (21%), Positives = 69/176 (39%), Gaps = 19/176 (11%) Query 332 DDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQ 391 D E + P L L R+ +++ R ++F +++AH L + L Sbjct 449 DKLTQEFIRIRKRDHLKP---ALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLG--- 502 Query 392 GLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN 451 L+G +TQ + + + F+ + +L+ T +A GLDIP Sbjct 503 -----------LLGMQVGELHGSLTQEQRLQSVNNFKSLQVPVLICTDLASRGLDIPKIE 551 Query 452 VVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQA 506 VV+ + + + GR ARA + + G R ++ A+ ++ E A Sbjct 552 VVINFDMPKTYEIYLHRVGRTARAGREGRSVTFV-GESSQDRSIVRSAIRSVEENA 606 Score = 55.6 bits (132), Expect = 1e-06, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 52/136 (38%), Gaps = 11/136 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAY--VAKRHLET---VDGAKVVVLVNRVHLVT 61 Q I AL GK+II TG+GKT AA + +R L + +VVVL L Sbjct 260 QSAAIPIALLGKDIIAGAVTGSGKT-AAFMIPIIERLLYKPAHIASTRVVVLTPTRELAI 318 Query 62 QHGEEFRRMLDGRWTVTT--LSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 Q + + + +T G + R L D++I T L + Sbjct 319 QVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKTRPDIVIATPGRFIDHLRNS---AS 375 Query 120 VELTVFSLIVVDECHH 135 + ++V+DE Sbjct 376 FSVDSVEILVIDEADR 391 >sp|Q9CAI7|IF4A3_ARATH Eukaryotic initiation factor 4A-3 OS=Arabidopsis thaliana OX=3702 GN=TIF4A-3 PE=1 SV=1 Length=414 Score = 108 bits (270), Expect = 5e-24, Method: Composition-based stats. Identities = 33/201 (16%), Positives = 74/201 (37%), Gaps = 20/201 (10%) Query 315 VTKTQILCAERRLLALFDDRKNELAHLATH-GPENPKLEMLEKILQRQFSSSNSPRGIIF 373 +T+ + R L+ + + + E KLE L + + + + +IF Sbjct 231 ITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDL----YETLAITQSVIF 286 Query 374 TRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN 433 TR+ L ++ + S+ M Q + ++++F+ G+ Sbjct 287 VNTRRKVDWLTDKMRSRD--------------HTVSATHGDMDQNTRDIIMREFRSGSSR 332 Query 434 LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKR 492 +L+ T + G+D+ ++V+ + L T + + GR R + A E Sbjct 333 VLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFMTSEDERMM 392 Query 493 ELINEALETLMEQAVAAVQKM 513 I ++E+ + V + Sbjct 393 ADIQRFYNVVVEELPSNVADL 413 >sp|Q6BTL5|DRS1_DEBHA ATP-dependent RNA helicase DRS1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DRS1 PE=3 SV=1 Length=771 Score = 111 bits (277), Expect = 5e-24, Method: Composition-based stats. Identities = 42/240 (18%), Positives = 87/240 (36%), Gaps = 22/240 (9%) Query 335 KNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQ 394 E + P L L + S R ++F ++SAH L + L Sbjct 478 VQEFVRIRKRDHLKP---ALLFQLIKSVDPSQQNRIVVFVARKESAHKLRIILG------ 528 Query 395 TVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV 454 L+G S +TQ + + F++ T+ +L+ T +A GLDIP +V+ Sbjct 529 --------LLGMRVSELHGSLTQEQRLASVNDFKNLTVPVLICTDLAARGLDIPKIEIVI 580 Query 455 RYGLLTNEISMVQARGR-ARADQSVYAFVA---TEGSRELKRELINEALETLMEQAVAAV 510 Y + + GR ARA + + + R + ++ I E + Sbjct 581 NYDMPKTHEIYLHRVGRTARAGREGKSITFVGESTQDRAIVKDAIKSISEEQARNSKQGK 640 Query 511 QKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQLLCINCMVAVGHGSDLR 570 +++ + +L + +K + ++Q + H ++ + H +++ Sbjct 641 AVSRNVDWKE-VEELNKIVESKATVIEEVLDEEKQAKEMLHAEMELSKATNMIKHEKEIQ 699 Score = 55.2 bits (131), Expect = 2e-06, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 46/128 (36%), Gaps = 9/128 (7%) Query 14 ALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA----KVVVLVNRVHLVTQHGEEFRR 69 AL GK+I+ TG+GKT A L +V+VL L Q + ++ Sbjct 292 ALLGKDIVAGAVTGSGKTAAYMIPIIERLLYKPAKISSTRVIVLAPTRELAIQVCDVGKK 351 Query 70 MLDGRWTV--TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSL 127 + + G + R L D++I T L + + + + Sbjct 352 IGQFVNNLNFGLAVGGLNLRQQEQQLKTRPDIVIATPGRLIDHIRNSPS---FSIDSLEV 408 Query 128 IVVDECHH 135 +V+DE Sbjct 409 LVIDEADR 416 >sp|A1CHL3|PRP28_ASPCL Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=prp28 PE=3 SV=1 Length=798 Score = 111 bits (276), Expect = 6e-24, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 77/182 (42%), Gaps = 19/182 (10%) Query 338 LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD 397 + E+ + + L IL S P I+F +++ ++ ++ Sbjct 610 EQRVELIAGEDKRKKRLADILS---SGEFRPPIIVFVNIKRNCDAIAREIKH-------- 658 Query 398 IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG 457 +G + + TQ ++ + ++G+ ++LVAT +A G+D+P ++VV + Sbjct 659 ------MGFSSVTLHGSKTQDQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFN 712 Query 458 LLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQ 515 + T+ S GR RA +S A ++ +L +++ + + ++K + Sbjct 713 MATSIESYTHRIGRTGRAGKSGVAITFLGNEDADVMYDLKQMLMKSPISRVPEELRKHEA 772 Query 516 AE 517 A+ Sbjct 773 AQ 774 Score = 59.0 bits (141), Expect = 1e-07, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 48/142 (34%), Gaps = 18/142 (13%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT---------RAAAYVAKRHLETV--DGAKVVVLVN 55 Q I AL+ +++I TG+GKT A E DG +VL Sbjct 393 QRAAIPIALQSRDLIGVAVTGSGKTASFLLPLLVYIAELPRIDEFEWRKNDGPYAIVLAP 452 Query 56 RVHLVTQHGEEFRRMLDGR--WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTS 113 L Q E + + V ++ G L +++I T L + Sbjct 453 TREL-AQQIEIEAKKFTQPLGFNVVSIVGGHSLEEQAYSLRNGAEIIIATPGRLVDCI-- 509 Query 114 PEEEEHVELTVFSLIVVDECHH 135 E + L+ I++DE Sbjct 510 --ERRILVLSQCCYIIMDEADR 529 >sp|Q09903|DRS1_SCHPO ATP-dependent RNA helicase drs1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=drs1 PE=3 SV=1 Length=754 Score = 111 bits (276), Expect = 6e-24, Method: Composition-based stats. Identities = 42/191 (22%), Positives = 76/191 (40%), Gaps = 20/191 (10%) Query 353 MLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQS 412 ML + + F R IIF R++ AH + + L+ + Sbjct 494 MLIYLCKELFHR----RTIIFFRSKAFAHKMRVIFG--------------LLSLNATEIH 535 Query 413 THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR- 471 ++Q + ++ F+DG N L+AT VA G+DI VV+ Y + GR Sbjct 536 GSLSQEQRVRALEDFRDGKCNYLLATDVASRGIDIKGIEVVINYEAPATHEVYLHRVGRT 595 Query 472 ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAAL 530 ARA +S A +A EG R++ + + + + + ++ +I +L+ Sbjct 596 ARAGRSGRAITLAGEGDRKVLKGVFKNSSAQNTKLVNRNLDFNKVEKFGKEIEELEPVVQ 655 Query 531 TKRAAQAAQRE 541 + +RE Sbjct 656 KVLDEEKQERE 666 Score = 57.9 bits (138), Expect = 3e-07, Method: Composition-based stats. Identities = 49/270 (18%), Positives = 91/270 (34%), Gaps = 29/270 (11%) Query 14 ALEGKNIIIWLPTGAGKTRAAAYVAKRHL----ETVDGAKVVVLVNRVHLVTQHGEEFRR 69 AL GK+I+ TG+GKT A L + V +V++L L Q + Sbjct 293 ALLGKDIVGAAVTGSGKTAAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQCHSVATK 352 Query 70 MLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLI 128 + + L G + + L + D++I T + + + + ++ Sbjct 353 IASFTDIMVCLCIGGLSLKLQEQELRKRPDIVIATPGRFIDHMRNS---QGFTVENIEIM 409 Query 129 VVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAIN----- 183 V+DE +D + L +Q Q + +A+ + ++N Sbjct 410 VMDEADRMLEDG-----FADELNEIIQACPKSRQTMLFSATMTDKVDDLIRLSLNRPVRV 464 Query 184 --HVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLC----HRRSQDPFGDLLKKLM 237 + A L T + + L +P LC HRR+ F Sbjct 465 FVDNKKTTAKLLTQEFVRVRPQRELL-----RPAMLIYLCKELFHRRTIIFFRSKAFAHK 519 Query 238 DQIHDHLEMPELSRKFGTQMYEQQVVKLSE 267 ++ L + G+ EQ+V L + Sbjct 520 MRVIFGLLSLNATEIHGSLSQEQRVRALED 549 >sp|Q921N6|DDX27_MOUSE Probable ATP-dependent RNA helicase DDX27 OS=Mus musculus OX=10090 GN=Ddx27 PE=1 SV=3 Length=760 Score = 111 bits (276), Expect = 6e-24, Method: Composition-based stats. Identities = 57/295 (19%), Positives = 120/295 (41%), Gaps = 52/295 (18%) Query 289 DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFD----DRKNELAHLATH 344 + L++ + R +D Y E + + +C+ R LF D +LA ++ Sbjct 332 EVLILDEADRMLDE-------YFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLK 384 Query 345 GPENPKLE-------MLEKILQRQFSSSNSPR---------------GIIFTRTRQSAHS 382 P + L + R + R ++FT+T++ AH Sbjct 385 NPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHR 444 Query 383 LLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAE 442 + L + ++ L G +++Q + E +++F+D +++LVAT VA Sbjct 445 M------HILLGLLGLQVGELHG--------NLSQTQRLEALRRFKDEQIDILVATDVAA 490 Query 443 EGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALE 500 GLDI V+ + + V GR ARA ++ + + E R++ +E++ A Sbjct 491 RGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKAAKA 550 Query 501 TLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQLL 555 + + + + +++ KI L++ +A ++E Q+ + ++ Q L Sbjct 551 PVKARILPQDVIL---KFRDKIEKLEKDVYAVLQLEAEEKEMQQSEAQIDTAQRL 602 Score = 58.3 bits (139), Expect = 2e-07, Method: Composition-based stats. Identities = 51/282 (18%), Positives = 98/282 (35%), Gaps = 26/282 (9%) Query 14 ALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA----KVVVLVNRVHLVTQHGEEFRR 69 L GK+I TG GKT A A L +V+VLV L Q ++ Sbjct 218 GLLGKDICACAATGTGKTAAFALPVLERLIYKPRQAAVTRVLVLVPTRELGIQVHSVTKQ 277 Query 70 MLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLI 128 + T L+ G + ++ L D+LI T L L + L+ ++ Sbjct 278 LAQFCSITTCLAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPS---FHLSSIEVL 334 Query 129 VVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQL 188 ++DE + + M + + + Q + +A+ ++ + +++ Sbjct 335 ILDEADRMLDEY-FEEQMKEIIRMCSHHRQTML----FSATMTDEVKDLASVSLKNPVRI 389 Query 189 CANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPE 248 N +T + +++ + R D + LM DH+ + Sbjct 390 FVNSNTDVAPFLRQEFIRIRPN-------------REGDREAIVAALLMRTFTDHVMLFT 436 Query 249 LSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDA 290 ++K +M+ + + L G Q LRR+ D Sbjct 437 QTKKQAHRMHILLGLLGLQVGELHGNLSQTQRLEALRRFKDE 478 >sp|A5E6W6|RRP3_LODEL ATP-dependent rRNA helicase RRP3 OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) OX=379508 GN=RRP3 PE=3 SV=1 Length=504 Score = 109 bits (272), Expect = 6e-24, Method: Composition-based stats. Identities = 62/315 (20%), Positives = 105/315 (33%), Gaps = 30/315 (10%) Query 236 LMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHD 295 LM + H + P + + + L + L + R+ L + D +L Sbjct 213 LMRKPHVIIATPG---RLIDHLEHTKGFSLKKLQYLVMDEVDRMIDLDYAKAIDQILKQI 269 Query 296 TVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLE 355 K + + + + ++L N K L Sbjct 270 PSHQRITYLYTATMSREIEKFKRSLNSPVQVEIVKLEKVPDKLKQTMCLTSPNTKDTRLI 329 Query 356 KILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHM 415 +I+ + + R IIFTRT L L + + L G M Sbjct 330 QIV----NLDSMKRVIIFTRTVVHTRRCCLMLLN------LGFKCVELHGQ--------M 371 Query 416 TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA 474 Q + I KF+ GT +LVAT VA GLDIP ++V+ Y + + + GR ARA Sbjct 372 PQSRRLGAINKFKAGT-PILVATDVAARGLDIPAVDLVINYDIP-DPTLYIHRVGRTARA 429 Query 475 DQSVYAF-VATEGSRELKRELINEA-----LETLMEQAVAAVQKMDQAEYQAKIRDLQQA 528 ++ A + T+ E + N E L + +Q I+ L+ Sbjct 430 GKAGKAISLVTQYDLESYLRIENTLGTKLPKEDLPLDEMQGLQVSVDRALSKAIQMLRNE 489 Query 529 ALTKRAAQAAQRENQ 543 + + N+ Sbjct 490 ENDNKLRHRGRSNNK 504 Score = 52.5 bits (124), Expect = 1e-05, Method: Composition-based stats. Identities = 47/229 (21%), Positives = 75/229 (33%), Gaps = 17/229 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q I AL+GK+I+ TG+GKT A A + + +VL L Q E Sbjct 125 QAAAIPHALQGKDIVGIAETGSGKTAAFAIPILQTLYTAAQPYYALVLAPTRELAFQIKE 184 Query 66 EFRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 F + + G M L R ++I T L L + L Sbjct 185 TFDALGSSMGLRSVCIIGGMSMMEQARDLMRKPHVIIATPGRLIDHLEHTKG---FSLKK 241 Query 125 FSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASP-------GTGGASK 177 +V+DE D Y + Q L+ + TA+ S Sbjct 242 LQYLVMDEVDRMI-DLDYAKAIDQILKQIPSHQRITYLY---TATMSREIEKFKRSLNSP 297 Query 178 LDGAINHVLQLCANLD-TWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRS 225 + I + ++ L T C+ SP +L + + + R+ Sbjct 298 VQVEIVKLEKVPDKLKQTMCLTSPNTKDTRLIQIVNLDSMKRVIIFTRT 346 >sp|P35683|IF4A1_ORYSJ Eukaryotic initiation factor 4A-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0701100 PE=2 SV=2 Length=414 Score = 108 bits (269), Expect = 6e-24, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 61/165 (37%), Gaps = 15/165 (9%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K E L + + + +IF TR+ L ++ + S Sbjct 263 KEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGRD--------------HTVS 308 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + M Q + ++++F+ G+ +L+ T + G+D+ ++V+ Y L T + + Sbjct 309 ATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRI 368 Query 470 GR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM 513 GR R + A E I ++E+ A V + Sbjct 369 GRSGRFGRKGVAINFVTRDDERMLFDIQRFYNVVIEELPANVADL 413 >sp|Q9SZB4|RH43_ARATH Putative DEAD-box ATP-dependent RNA helicase 43 OS=Arabidopsis thaliana OX=3702 GN=RH43 PE=3 SV=1 Length=542 Score = 109 bits (273), Expect = 7e-24, Method: Composition-based stats. Identities = 37/162 (23%), Positives = 61/162 (38%), Gaps = 20/162 (12%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ L + LQ+ +P +IF + + +L LL G Sbjct 336 KIVYLLECLQK-----TTPPVLIFCENKADVDDIHEYL--------------LLKGVEAV 376 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q D+ I F+ G ++LVAT VA +GLD P V+ Y + + V Sbjct 377 AIHGGKDQEDRDYAISLFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPGEIENYVHRI 436 Query 470 GR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAV 510 GR R ++ A ++ L + L +Q + V Sbjct 437 GRTGRCGKTGIATTFINKNQSEITLLDLKHLLQEAKQRIPPV 478 Score = 46.7 bits (109), Expect = 6e-04, Method: Composition-based stats. Identities = 24/145 (17%), Positives = 50/145 (34%), Gaps = 20/145 (14%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAY--VAKRHLETV-------DGAKVVVLVNRV 57 Q + + L G+++I TG+GKT + E + +G +V+ Sbjct 124 QVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSR 183 Query 58 HLVTQHGEEFRRMLD-------GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMA 110 L Q + + + R G + R+ + + +++ T L+ Sbjct 184 ELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIVVATPGRLKDI 243 Query 111 LTSPEEEEHVELTVFSLIVVDECHH 135 L + + L L+ +DE Sbjct 244 LAKKK----MSLDACRLLTLDEADR 264 >sp|P41376|IF4A1_ARATH Eukaryotic initiation factor 4A-1 OS=Arabidopsis thaliana OX=3702 GN=EIF4A1 PE=1 SV=1 Length=412 Score = 108 bits (269), Expect = 7e-24, Method: Composition-based stats. Identities = 33/201 (16%), Positives = 75/201 (37%), Gaps = 20/201 (10%) Query 315 VTKTQILCAERRLLALFDDRKNELAHLATH-GPENPKLEMLEKILQRQFSSSNSPRGIIF 373 +T+ + R L+ + + + E KLE L + + + + +IF Sbjct 229 ITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDL----YETLAITQSVIF 284 Query 374 TRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN 433 TR+ L ++ + S+ M Q + ++++F+ G+ Sbjct 285 VNTRRKVDWLTDKMRSRD--------------HTVSATHGDMDQNTRDIIMREFRSGSSR 330 Query 434 LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKR 492 +L+ T + G+D+ ++V+ + L T + + GR R + A E Sbjct 331 VLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERML 390 Query 493 ELINEALETLMEQAVAAVQKM 513 I + ++E+ + V + Sbjct 391 FDIQKFYNVVVEELPSNVADL 411 >sp|Q6CJU1|DBP5_KLULA ATP-dependent RNA helicase DBP5 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=DBP5 PE=3 SV=1 Length=469 Score = 109 bits (271), Expect = 8e-24, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 72/180 (40%), Gaps = 23/180 (13%) Query 352 EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ 411 E IL + IIF +T+Q+A+ L L+++ G S Sbjct 302 EHKYTILSELYGLLTIGSSIIFVKTKQTANLLYAKLKKE--------------GHQVSIL 347 Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT------NEISM 465 + +D+ +I F++G +L+ T+V G+DIP ++VV Y L T + + Sbjct 348 HGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVVNYDLPTLPNGQADPSTY 407 Query 466 VQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD 524 V GR R ++ A + E+++ + + + V D E + ++ Sbjct 408 VHRIGRTGRFGRTGVAISFIHDKKSF--EVLSAIQKYFGDIEITKVPTDDLDEMETIVKK 465 Score = 47.5 bits (111), Expect = 3e-04, Method: Composition-based stats. Identities = 21/117 (18%), Positives = 44/117 (38%), Gaps = 8/117 (7%) Query 18 KNIIIWLPTGAGKTRAAAYVAKRHLE-TVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWT 76 N+I +G GKT A + ++ V+ + + L L Q E + M T Sbjct 119 HNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAICLSPARELARQTLEVIQEMGKFTKT 178 Query 77 VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC 133 + L + P + + ++++ T + + + + L + V+DE Sbjct 179 SSQL---VVPDSFERNKPITANIVVGTPGTVLDLI----RRKMLNLGSIKVFVLDEA 228 >sp|Q6Z2Z4|IF4A3_ORYSJ Eukaryotic initiation factor 4A-3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0146600 PE=1 SV=1 Length=414 Score = 107 bits (268), Expect = 8e-24, Method: Composition-based stats. Identities = 34/201 (17%), Positives = 74/201 (37%), Gaps = 20/201 (10%) Query 315 VTKTQILCAERRLLALFDDRKNELAHLATH-GPENPKLEMLEKILQRQFSSSNSPRGIIF 373 +T+ + R L+ + + + E+ KL+ L + + + + +IF Sbjct 231 ITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEDWKLDTLCDL----YETLAITQSVIF 286 Query 374 TRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN 433 TR+ L ++ + S+ M Q + ++++F+ G+ Sbjct 287 VNTRRKVDWLTDKMRSRD--------------HTVSATHGDMDQNTRDIIMREFRSGSSR 332 Query 434 LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKR 492 +L+ T + G+D+ ++V+ Y L T + + GR R + A E Sbjct 333 VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERML 392 Query 493 ELINEALETLMEQAVAAVQKM 513 I +E+ A V + Sbjct 393 FDIQRFYNVTIEELPANVADL 413 >sp|Q4TVV3|DDX46_DANRE Probable ATP-dependent RNA helicase DDX46 OS=Danio rerio OX=7955 GN=ddx46 PE=2 SV=1 Length=1018 Score = 111 bits (276), Expect = 9e-24, Method: Composition-based stats. Identities = 45/168 (27%), Positives = 64/168 (38%), Gaps = 18/168 (11%) Query 347 ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA 406 E K L +IL IIF ++ A LL L + L G Sbjct 570 EEKKFLKLLEILGHY---QEKGSVIIFVDKQEHADGLLKDLMK------ASYPCMSLHG- 619 Query 407 GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV 466 + Q D+ +I F++G LLVATSVA GLD+ +VV Y + V Sbjct 620 -------GIDQYDRDSIINDFKNGACRLLVATSVAARGLDVKQLILVVNYSCPNHYEDYV 672 Query 467 QARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM 513 GR RA YA+ + I +ALE A ++++ Sbjct 673 HRAGRTGRAGNKGYAYTFITEGQARYSGDILKALELSGSSVPAELEQL 720 Score = 64.0 bits (154), Expect = 4e-09, Method: Composition-based stats. Identities = 27/137 (20%), Positives = 52/137 (38%), Gaps = 10/137 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYV--AKRHLETVDGAK-----VVVLVNRVHL 59 Q + I + G+++I TG+GKT A + + L+ + V++ L Sbjct 367 QAQAIPAIMSGRDLIGIAKTGSGKT-IAFLLPMFRHILDQRPVGEAEGPLAVIMTPTREL 425 Query 60 VTQHGEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEE 118 Q +E ++ V + G G L R ++++CT + L + Sbjct 426 ALQITKECKKFSKSLALRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLGANNGR- 484 Query 119 HVELTVFSLIVVDECHH 135 L + +V+DE Sbjct 485 VTNLRRVTYVVIDEADR 501 >sp|A5DDF4|PRP5_PICGU Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=PRP5 PE=3 SV=2 Length=862 Score = 110 bits (275), Expect = 1e-23, Method: Composition-based stats. Identities = 77/429 (18%), Positives = 147/429 (34%), Gaps = 61/429 (14%) Query 167 TASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQP-CKQYNLCHRRS 225 T SP S+ AI + +T + P ++ QP K + Sbjct 289 TPSPI---QSQALPAIMSGRDIIGVANTGSGKTLAFVIPLIRHIMDQPPLKSGDGPIGVI 345 Query 226 QDPFGDLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEAAALAGLQEQRVYAL- 282 P +L ++ ++ + + ELS +G E Q+ L + RV L Sbjct 346 LTPTRELALQIQKELVNFTQAVELSVCCCYGGSPIESQIADLKRGTEIIVGTPGRVIDLL 405 Query 283 -------HLRRYNDALLIHDTVRAVD---------ALAALQDFYHREHVTKTQILCAERR 326 R L++ + R D L+ ++ + T Sbjct 406 AANGGRVTNLRRTTFLVLDEADRMFDMGFEPQVNKVLSQIRPDKQMVLFSAT-FPKKLES 464 Query 327 LLALFDDRKNELAH--LATHGPE---------------NPKLEMLEKILQRQFSSSNSPR 369 L F E+ ++ PE KL+ L KI+ + Sbjct 465 LARSFLVDPIEIVAGGISVVAPEITQRVVLIDDSGDISQKKLQALLKIVDEFSVEDPEGK 524 Query 370 GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD 429 +IF +++A L++ L Q I ++ G Q D++ I++F D Sbjct 525 ILIFVDKQEAADDLMVRLLNNQ------ISCIVIHG--------GKDQVDRKHAIKQFSD 570 Query 430 GT-LNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ---ARGRARADQSVYAFVATE 485 L +L+ATS+A GLD+ N+V+ Y ++ V GRA A + V + Sbjct 571 KNGLRVLIATSIAARGLDVRGLNLVINYDAPSHMEDYVHRVGRTGRAGATGTAVTLVLSS 630 Query 486 GSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQ 545 RE++ + + ++ A +Q + ++ K++ + Q + Sbjct 631 QEREIRDLVRAMKMSGKVDDIPAELQSI-ADKFLKKVK-SGEEKFNSGFGGKGLENLQER 688 Query 546 QFPVEHVQL 554 + V +++ Sbjct 689 RDNVREIEM 697 Score = 54.4 bits (129), Expect = 3e-06, Method: Composition-based stats. Identities = 28/136 (21%), Positives = 47/136 (35%), Gaps = 8/136 (6%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKV------VVLVNRVHLV 60 Q + + + G++II TG+GKT A RH+ K V+L L Sbjct 294 QSQALPAIMSGRDIIGVANTGSGKTLAFVIPLIRHIMDQPPLKSGDGPIGVILTPTRELA 353 Query 61 TQ-HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 Q E +V G + L R ++++ T + L + Sbjct 354 LQIQKELVNFTQAVELSVCCCYGGSPIESQIADLKRGTEIIVGTPGRVIDLLAANGGR-V 412 Query 120 VELTVFSLIVVDECHH 135 L + +V+DE Sbjct 413 TNLRRTTFLVLDEADR 428 >sp|Q41741|IF4A_MAIZE Eukaryotic initiation factor 4A OS=Zea mays OX=4577 PE=2 SV=1 Length=410 Score = 107 bits (267), Expect = 1e-23, Method: Composition-based stats. Identities = 33/201 (16%), Positives = 74/201 (37%), Gaps = 20/201 (10%) Query 315 VTKTQILCAERRLLALFDDRKNELAHLATH-GPENPKLEMLEKILQRQFSSSNSPRGIIF 373 +T+ + R L+ + + + E+ KL+ L + + + + +IF Sbjct 227 ITRKFMNKPVRILVKRDELTLEGIKQFYVNIDKEDWKLDTLCDL----YETLAITQSVIF 282 Query 374 TRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN 433 TR+ L ++ + S+ M Q + ++++F+ G+ Sbjct 283 VNTRRKVDWLTDKMRSRD--------------HTVSATHGDMDQNTRDIIMREFRSGSSR 328 Query 434 LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKR 492 +L+ T + G+D+ ++V+ Y L T + + GR R + A E Sbjct 329 VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERIV 388 Query 493 ELINEALETLMEQAVAAVQKM 513 + +E+ A V + Sbjct 389 FDVQRFYNVTVEELPANVADL 409 >sp|A3LQ55|PRP5_PICST Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) OX=322104 GN=PRP5 PE=3 SV=2 Length=875 Score = 110 bits (275), Expect = 1e-23, Method: Composition-based stats. Identities = 65/400 (16%), Positives = 134/400 (34%), Gaps = 67/400 (17%) Query 172 TGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQP-CKQYNLCHRRSQDPFG 230 T S+ AI + T + P L+ QP K P Sbjct 297 TSIQSQALPAIMSGRDIIGVAKTGSGKTLSFVLPMLRHIQDQPDLKDGEGPIGLILSPTR 356 Query 231 DLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEAAALAGLQEQRVYAL------ 282 +L ++ +I + + ++ +G E Q+ +L + A + R+ L Sbjct 357 ELAVQIHKEITNFTKRLGMTACCCYGGSPIESQIAELKKGAQILVGTPGRIIELLAANSG 416 Query 283 --HLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH 340 R +++ + R D + + ++ + A F + LA Sbjct 417 RITNLRRVTYVVLDEADRMFDL--GFEPQVTKIS-SQIRPESQTVLFSATFPRKIELLAK 473 Query 341 LATHGP------------------------------ENPKLEMLEKILQRQFSSSNSPRG 370 + P E+ K + L IL S + Sbjct 474 RLLYNPLEIIVGGISVVASEITQKVELFEKGESSQLEDEKFDRLLNILNVFSIESKHSKV 533 Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ--STHMTQRDQQEVIQKF- 427 +IF + +A LL+ L +G+ + Q D++ I++F Sbjct 534 LIFVEKQSAADDLLVKL----------------LGSNHPCLTIHGGKDQIDRKYAIKEFS 577 Query 428 -QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ---ARGRARADQSVYAFVA 483 +D +++L+ATS+A GLD+ ++V+ Y + V GRA + FV+ Sbjct 578 SKDSGVDILIATSIAARGLDVKGLDLVINYDPPNHMEDYVHRVGRTGRAGMKGTAITFVS 637 Query 484 TEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIR 523 ++ R + + + + E + + + ++ K++ Sbjct 638 SDQERSVTDLVRAMTMSKIPEDEIPSRLIEIRNQFLEKVK 677 Score = 54.4 bits (129), Expect = 3e-06, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 46/136 (34%), Gaps = 8/136 (6%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK------VVVLVNRVHLV 60 Q + + + G++II TG+GKT + RH++ K ++L L Sbjct 300 QSQALPAIMSGRDIIGVAKTGSGKTLSFVLPMLRHIQDQPDLKDGEGPIGLILSPTRELA 359 Query 61 TQHGEEFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 Q +E G + L + +L+ T + L + Sbjct 360 VQIHKEITNFTKRLGMTACCCYGGSPIESQIAELKKGAQILVGTPGRIIELLAANSGR-I 418 Query 120 VELTVFSLIVVDECHH 135 L + +V+DE Sbjct 419 TNLRRVTYVVLDEADR 434 >sp|Q07886|DDX49_DROME Probable ATP-dependent RNA helicase Dbp45A OS=Drosophila melanogaster OX=7227 GN=Dbp45A PE=2 SV=2 Length=521 Score = 109 bits (271), Expect = 1e-23, Method: Composition-based stats. Identities = 39/191 (20%), Positives = 77/191 (40%), Gaps = 22/191 (12%) Query 353 MLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQS 412 +L + L++ + + +IFT T++ L + L+ + N Sbjct 237 VLIEALRKYREENENANVMIFTNTKKYCQLLSMTLKNME--------------IDNVCLH 282 Query 413 THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR- 471 M Q+++ + +F+ + L+AT VA GLDIP +V+ + L + GR Sbjct 283 GFMRQKERVAALSRFKSNQIRTLIATDVAARGLDIPSVELVMNHMLPRTPKEYIHRVGRT 342 Query 472 ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALT 531 ARA + + R+L+ + A+E + + +DQ + Q +T Sbjct 343 ARAGRKGMSISIFRFPRDLE---LLAAIEEEINTKLTEHP-IDQRMVERIF---MQVNVT 395 Query 532 KRAAQAAQREN 542 +R ++ N Sbjct 396 RRESEMQLDNN 406 Score = 52.9 bits (125), Expect = 7e-06, Method: Composition-based stats. Identities = 30/131 (23%), Positives = 43/131 (33%), Gaps = 5/131 (4%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVD-GAKVVVLVNRVHLVTQHGE 65 Q + I L G++ I TG+GKT A A L +VL L Q E Sbjct 34 QQKCIPAILAGQDCIGAAKTGSGKTFAFALPILERLSEEPVSHFALVLTPTHELAYQISE 93 Query 66 EFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 +F V +SG L + +++ L LT + Sbjct 94 QFLVAGQAMGVRVCVVSGGTDQMVESQKLMQRPHIVVAMPGRLADHLTGCDTFSF---DN 150 Query 125 FSLIVVDECHH 135 +VVDE Sbjct 151 LKYLVVDEADR 161 >sp|Q2HEB0|PRP28_CHAGB Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=PRP28 PE=3 SV=1 Length=705 Score = 109 bits (273), Expect = 1e-23, Method: Composition-based stats. Identities = 62/390 (16%), Positives = 135/390 (35%), Gaps = 60/390 (15%) Query 137 HKDTVYNVIM---SQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLD 193 D Y +I+ + ++ A+ LG T GG S + A N Sbjct 342 KNDGPYALILAPTRELVQQIETEARKFAGPLGFTVVSIVGGHSLEEQAFAL-----RNGA 396 Query 194 TWCIMSPQ---NCCPQLQEHSQQPCKQYNLCHRRSQDP-FGDLLKKLMDQIHDHLEMPEL 249 + +P +C + Q C R D F + L K++D + E P+ Sbjct 397 EIIVATPGRLVDCLERRLLVFSQCCYIIMDEADRMIDQGFEEPLTKILDALPVANEKPDT 456 Query 250 SRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDF 309 +Q+ + Y RY ++ T+ L + Sbjct 457 EDAENSQLMSR-------------------YLGGKDRYRQTMMYTATM------PPLVEK 491 Query 310 YHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPR 369 ++++ + I+ A+ + + E+ + L++IL S P Sbjct 492 IAKKYLRRPAIVTIGNAGEAVDTVEQ----RVEFVSGEDKRKRRLQEILN---SGQFKPP 544 Query 370 GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD 429 I+F +++ + ++ G + TQ ++ + ++ Sbjct 545 VIVFVNIKRNCEMVAKDIKSW--------------GYSTVTLHGSKTQEQREASLASVRN 590 Query 430 GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGS 487 G N+LVAT +A G+D+ ++VV + + ++ + GR RA +S A Sbjct 591 GQANILVATDLAGRGIDVADVSLVVNFNMPSSIEAYTHRIGRTGRAGKSGVAITFLGNED 650 Query 488 RELKRELINEALETLMEQAVAAVQKMDQAE 517 ++ +L ++ + + +++ + A+ Sbjct 651 SDVMYDLKQIISKSSISKVPEELRRHEAAQ 680 Score = 57.9 bits (138), Expect = 2e-07, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 48/139 (35%), Gaps = 14/139 (10%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT---------RAAAYVAKRHLETVDGAKVVVLVNRV 57 Q I A + +++I TG+GKT + DG ++L Sbjct 296 QRAAIPIAQQARDLIGVAVTGSGKTAAFLLPLLVYISELPPLTEFNKNDGPYALILAPTR 355 Query 58 HLVTQHGEEFRRM-LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE 116 LV Q E R+ +TV ++ G L ++++ T L L E Sbjct 356 ELVQQIETEARKFAGPLGFTVVSIVGGHSLEEQAFALRNGAEIIVATPGRLVDCL----E 411 Query 117 EEHVELTVFSLIVVDECHH 135 + + I++DE Sbjct 412 RRLLVFSQCCYIIMDEADR 430 >sp|A7TEF4|FAL1_VANPO ATP-dependent RNA helicase FAL1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 GN=FAL1 PE=3 SV=1 Length=399 Score = 107 bits (266), Expect = 1e-23, Method: Composition-based stats. Identities = 36/199 (18%), Positives = 70/199 (35%), Gaps = 26/199 (13%) Query 315 VTKTQILCAERRLLALFDDRKNELAHLATH-GPENPKLEMLEKILQRQFSSSNSPRGIIF 373 VTK + + L+ + + + E+ K + L + + S + +IF Sbjct 216 VTKKFMSDPVKILVKRDEISLEGIKQYYVNVEKEDWKFDTLCDL----YDSLTITQCVIF 271 Query 374 TRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN 433 T++ L L Q S M Q D+ +V+ F+ G Sbjct 272 CNTKKKVDWLSAKLTQSN--------------FAVVSMHGDMKQEDRNKVMSDFRSGHSR 317 Query 434 LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELK 491 +L++T V G+D+ ++V+ Y + + + GR R + A T Sbjct 318 VLISTDVWARGIDVQQVSLVINYDIPEIMENYIHRIGRSGRFGRKGVAINFITSSDLSKM 377 Query 492 RELINEALETLMEQAVAAV 510 +E +E ++ V Sbjct 378 KE-----IEKYYRIKISPV 391 Score = 40.9 bits (94), Expect = 0.029, Method: Composition-based stats. Identities = 17/130 (13%), Positives = 37/130 (28%), Gaps = 7/130 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE 65 Q I + G ++I +G GKT + ++ + +VL L +Q + Sbjct 50 QSRAITQIISGTDVIAQAQSGTGKTATFTIGMLQAIDLKRKDLQALVLSPTRELASQINQ 109 Query 66 EFRRMLD--GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELT 123 + D + G ++ T + Sbjct 110 VVSNLGDYMNVQSYAMTGGKTMKDDLNRMQKNGCQVVSGTPGRVLDMFKRHLLNT----R 165 Query 124 VFSLIVVDEC 133 ++++DE Sbjct 166 NVQMLILDEA 175 >sp|P41377|IF4A2_ARATH Eukaryotic initiation factor 4A-2 OS=Arabidopsis thaliana OX=3702 GN=TIF4A-2 PE=1 SV=1 Length=412 Score = 107 bits (267), Expect = 1e-23, Method: Composition-based stats. Identities = 32/201 (16%), Positives = 76/201 (38%), Gaps = 20/201 (10%) Query 315 VTKTQILCAERRLLALFDDRKNELAHLATH-GPENPKLEMLEKILQRQFSSSNSPRGIIF 373 +T+ + R L+ + + + E+ KLE L + + + + +IF Sbjct 229 ITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEDWKLETLCDL----YETLAITQSVIF 284 Query 374 TRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN 433 TR+ L ++ + S+ M Q + ++++F+ G+ Sbjct 285 VNTRRKVDWLTDKMRSRD--------------HTVSATHGDMDQNTRDIIMREFRSGSSR 330 Query 434 LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKR 492 +L+ T + G+D+ ++V+ + L T + + GR R + A + Sbjct 331 VLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDQRML 390 Query 493 ELINEALETLMEQAVAAVQKM 513 I + ++E+ + V + Sbjct 391 FDIQKFYNVVVEELPSNVADL 411 >sp|Q5K5B6|RH57_ORYSJ DEAD-box ATP-dependent RNA helicase 57 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0647900 PE=2 SV=2 Length=540 Score = 108 bits (270), Expect = 1e-23, Method: Composition-based stats. Identities = 54/298 (18%), Positives = 114/298 (38%), Gaps = 22/298 (7%) Query 206 QLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKL 265 +L + + CK+ + L K + H ++ + +++ + L Sbjct 226 ELAAQTTRECKKLAKGRKFYIKLMTKDLSKSGNFKDMHCDILISTPLRLDHAVQKRDLDL 285 Query 266 SEAAALAGLQEQRVYALHLRRYNDALLIH-DTVRAVDALAALQDFYHREHVTKTQILCAE 324 S L + +++ L D+++ + +L + E + +T + A Sbjct 286 SRVEYLVLDESDKLFELGFVEVIDSVVKACSNPSIIRSLFSATLPDSIETLARTIMHDAV 345 Query 325 RRLLALFDDRKNELAH-LATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSL 383 R ++ + + + L G E KL L + F+ S +P +IF ++++ A L Sbjct 346 RVIVGRKNSASSLIKQKLIFAGTEKGKLLALRQ----SFAESLNPPVLIFVQSKERAKEL 401 Query 384 LLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEE 443 + L D+RA ++ + + +Q+ + + G +L+AT V Sbjct 402 ------YKELAFDDVRADVI--------HADLDEEQRQDAVDNLRAGKTWVLIATEVIAR 447 Query 444 GLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEAL 499 G+D N V+ Y + + + GR RA +S A TE + R + N + Sbjct 448 GMDFKGVNCVINYDFPESASAYIHRIGRSGRAGRSGEAITFFTEEDKPFLRNIANVLI 505 Score = 59.8 bits (143), Expect = 6e-08, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 57/130 (44%), Gaps = 11/130 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAY---VAKRHLETVDGAKVVVLVNRVHLVTQH 63 Q + I L G+ PTG+GKT A + K + +G K V+L L Q Sbjct 173 QRQAIPILLSGRECFACAPTGSGKTL-AFLFPILMKIKPGSKEGVKAVILCPTRELAAQT 231 Query 64 GEEFRRMLDGR-WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 E +++ GR + + ++ D+ F + D+LI T L A+ + ++L Sbjct 232 TRECKKLAKGRKFYIKLMTKDLSKSGNFKDM--HCDILISTPLRLDHAVQKRD----LDL 285 Query 123 TVFSLIVVDE 132 + +V+DE Sbjct 286 SRVEYLVLDE 295 >sp|Q7RYZ7|DBP8_NEUCR ATP-dependent RNA helicase dbp-8 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=dbp-8 PE=3 SV=1 Length=626 Score = 109 bits (272), Expect = 1e-23, Method: Composition-based stats. Identities = 43/209 (21%), Positives = 75/209 (36%), Gaps = 21/209 (10%) Query 338 LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD 397 L + P + L L + IIF +A Sbjct 423 LRQMHLQVPVTHREHYLHMFLLT--PQNVDKSVIIFCNRTSTAD--------------FL 466 Query 398 IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG 457 L+ +S + + Q + + + +F+ +LVAT VA GLDIP +V+ Y Sbjct 467 HHLLRLLDHRVTSLHSKLPQSQRIDNLGRFRASAARILVATDVAARGLDIPEVKIVINYD 526 Query 458 LLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQA 516 + + + GR ARA + A G R++ L A+E + + + A + Sbjct 527 IPRDPDDYIHRVGRTARAGRKGDAVTFV-GQRDVDLVL---AIEQRVGRQMEAWTEEGVN 582 Query 517 EYQAKIRDLQQAALTKRAAQAAQRENQRQ 545 IRD + K+ + E Q++ Sbjct 583 LETRVIRDALKVVGEKKREALLEIEEQKE 611 Score = 57.9 bits (138), Expect = 2e-07, Method: Composition-based stats. Identities = 46/236 (19%), Positives = 74/236 (31%), Gaps = 21/236 (9%) Query 15 LEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE-EFRRMLD 72 L+G++ I TG+GKT A A + ++ V+L L Q E Sbjct 230 LKGRDCIGGSRTGSGKTVAFAVPILQQWAANPSAIFGVILTPTRELALQIMEQVIALSQP 289 Query 73 GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDE 132 ++G R LA+ L+I T L + + E+ L IV+DE Sbjct 290 HVLKAVLITGGADMRKQAIDLAKRPHLVIATPGRLADHIRTSGEDTICGLRRVKFIVLDE 349 Query 133 CHHTHKDTVYNVIMSQYLELKLQRAQPLPQ-VLGLTAS------------PGTGGASKLD 179 ++ + ++ E P + L TA+ P G A Sbjct 350 ADRLLANSGHGSMLPDVEECFSVLPPPSERQTLLFTATMTPEVKALSERPPIPGRAPVFV 409 Query 180 GAINHV-LQLCANLDTWCIMSPQNCCPQ-----LQEHSQQPCKQYNLCHRRSQDPF 229 ++ L + A L + P L C+R S F Sbjct 410 CEVDTQRLAIPATLRQMHLQVPVTHREHYLHMFLLTPQNVDKSVIIFCNRTSTADF 465 >sp|Q40465|IF411_TOBAC Eukaryotic initiation factor 4A-11 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 Length=413 Score = 107 bits (266), Expect = 2e-23, Method: Composition-based stats. Identities = 33/201 (16%), Positives = 74/201 (37%), Gaps = 20/201 (10%) Query 315 VTKTQILCAERRLLALFDDRKNELAHLATH-GPENPKLEMLEKILQRQFSSSNSPRGIIF 373 +T+ + R L+ + + + E KLE L + + + + +IF Sbjct 230 ITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDL----YETLAITQSVIF 285 Query 374 TRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN 433 TR+ L ++ + S+ M Q + ++++F+ G+ Sbjct 286 VNTRRKVDWLTDKMRGRD--------------HTVSATHGDMDQNTRDIIMREFRSGSSR 331 Query 434 LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKR 492 +L+ T + G+D+ ++V+ Y L T + + G R + + E Sbjct 332 VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGHSGRFGRKGVSINFVTKDDERML 391 Query 493 ELINEALETLMEQAVAAVQKM 513 I + ++E+ A V + Sbjct 392 FDIQKFYNVVIEELPANVADL 412 >sp|A3LSN3|DRS1_PICST ATP-dependent RNA helicase DRS1 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) OX=322104 GN=DRS1 PE=3 SV=3 Length=741 Score = 109 bits (272), Expect = 2e-23, Method: Composition-based stats. Identities = 43/210 (20%), Positives = 81/210 (39%), Gaps = 24/210 (11%) Query 336 NELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQT 395 E + P L L ++ + R ++F ++SAH L + L Sbjct 443 QEFVRIRKRDHLKP---ALLFQLLKKLDPAQQSRIVVFVSRKESAHKLRIVLG------- 492 Query 396 VDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVR 455 L+G S +TQ + + F+ + +L+ T +A GLDIP +V+ Sbjct 493 -------LLGMKVSELHGSLTQEQRLNNVNDFKKLIVPVLICTDLAARGLDIPKIEIVIN 545 Query 456 YGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLM-----EQAVAA 509 Y + + + GR ARA + + G R ++ +A+++L +AV+ Sbjct 546 YDMPKSHEVYLHRVGRTARAGRDGTSISFV-GESTSDRNIVKDAIKSLEGGEVKGKAVSR 604 Query 510 VQKMDQAEYQAKIRDLQQAALTKRAAQAAQ 539 E KI + +Q + + + Q Sbjct 605 NIDWVDVEQLNKIVESKQEIIEEVLDEEKQ 634 Score = 54.0 bits (128), Expect = 3e-06, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 47/128 (37%), Gaps = 9/128 (7%) Query 14 ALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA----KVVVLVNRVHLVTQHGEEFRR 69 AL G++I+ TG+GKT A L +V+VL L Q G+ ++ Sbjct 256 ALLGRDIVAGAVTGSGKTAAYMIPIIERLLYKPSKVASTRVIVLTPTRELAIQVGDVGKK 315 Query 70 MLDGRWTV--TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSL 127 + + G + R L D++I T L + + + + Sbjct 316 IGQFVNNLNFGLAVGGLNLRQQEQQLKSRPDVVIATPGRLIDHIRNSPS---FSIDSLEV 372 Query 128 IVVDECHH 135 +V+DE Sbjct 373 LVIDEADR 380 >sp|Q755W0|FAL1_EREGS ATP-dependent RNA helicase FAL1 OS=Eremothecium gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=FAL1 PE=3 SV=2 Length=398 Score = 106 bits (265), Expect = 2e-23, Method: Composition-based stats. Identities = 33/168 (20%), Positives = 61/168 (36%), Gaps = 18/168 (11%) Query 315 VTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFT 374 VTK + + L+ + + + K E L + S + +IF Sbjct 215 VTKKFMSDPVKILVKRDEVSLEGIKQYHINVD---KEEWKFDTLCDLYDSLTITQCVIFC 271 Query 375 RTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNL 434 T++ L L Q +S M Q D+ +V+ F+ G+ + Sbjct 272 NTKKKVDWLSHKLIQNN--------------FAVASIHGDMKQDDRDKVMSDFRSGSSRV 317 Query 435 LVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF 481 L++T V G+D+ ++V+ Y L + + GR R + A Sbjct 318 LISTDVWARGIDVQQVSLVINYDLPELLENYIHRIGRSGRFGRKGVAI 365 Score = 47.5 bits (111), Expect = 3e-04, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 46/129 (36%), Gaps = 6/129 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE 65 Q I + GK++I +G GKT + +++ + +VL L Q + Sbjct 50 QSRAITQIIRGKDVIAQAQSGTGKTATFTIGMLQVIDSSSKDLQALVLSPTRELAAQISQ 109 Query 66 EFRRMLDGRWTVT-TLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 R + D V +G + + + ++ T + + + + Sbjct 110 VVRNLGDYMNVVALACTGGKALQQDISKVNKGCHVMSGTPGRVLDMI----KRRIINTRH 165 Query 125 FSLIVVDEC 133 ++V+DE Sbjct 166 VKMLVLDEA 174 >sp|Q8H0U8|RH42_ARATH DEAD-box ATP-dependent RNA helicase 42 OS=Arabidopsis thaliana OX=3702 GN=RH42 PE=1 SV=2 Length=1166 Score = 109 bits (273), Expect = 2e-23, Method: Composition-based stats. Identities = 39/196 (20%), Positives = 77/196 (39%), Gaps = 20/196 (10%) Query 335 KNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQ 394 ++ L PE+ + L ++L S + ++F ++++ +L + + Sbjct 747 NKDITQLVEVRPESDRFLRLLELLGEW---SEKGKILVFVQSQEKCDALYRDMIKSSYPC 803 Query 395 TVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV 454 S Q D++ I F++ NLL+ATSVA GLD+ +VV Sbjct 804 L--------------SLHGGKDQTDRESTISDFKNDVCNLLIATSVAARGLDVKELELVV 849 Query 455 RYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQK 512 + + V GR RA + A +E + +L+ +ALE + ++ Sbjct 850 NFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDLV-KALELSEQPVPDDLKA 908 Query 513 MDQAEYQAKIRDLQQA 528 + + ++QA Sbjct 909 LADGFMVKVKQGIEQA 924 Score = 62.5 bits (150), Expect = 1e-08, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 50/136 (37%), Gaps = 8/136 (6%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKV------VVLVNRVHLV 60 Q + + + G++ I TG+GKT RH++ + +V+ LV Sbjct 556 QTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELV 615 Query 61 TQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 Q + R+ + G G L R ++++CT + L + + Sbjct 616 QQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGK-I 674 Query 120 VELTVFSLIVVDECHH 135 L + +V+DE Sbjct 675 TNLRRVTFLVMDEADR 690 >sp|P41378|IF4A_WHEAT Eukaryotic initiation factor 4A OS=Triticum aestivum OX=4565 PE=2 SV=1 Length=414 Score = 106 bits (265), Expect = 2e-23, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 61/165 (37%), Gaps = 15/165 (9%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K E L + + + +IF TR+ L ++ + S Sbjct 263 KEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGRD--------------HTVS 308 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + M Q + ++++F+ G+ +L+ T + G+D+ ++V+ Y L T + Sbjct 309 ATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYQHRI 368 Query 470 GR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM 513 GR R + A E I + ++E+ A V + Sbjct 369 GRSGRFGRKGVAINFVTREDERMLFDIQKFYNVVIEELPANVADL 413 >sp|Q4I7F9|PRP28_GIBZE Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=PRP28 PE=3 SV=1 Length=721 Score = 109 bits (271), Expect = 2e-23, Method: Composition-based stats. Identities = 51/351 (15%), Positives = 123/351 (35%), Gaps = 54/351 (15%) Query 204 CPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLM---------DQIHDHLEMPELSRKFG 254 + +++ +Q R+ P G + ++ + D E+ + Sbjct 366 YALIMAPTRELVQQIETEARKFAGPLGFRVVSIVGGHQIEEQAYNLRDGAEIVVATPGRL 425 Query 255 TQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALL-------------IHDTVRAVD 301 E++++ LS+ + + R+ L + +L + + + Sbjct 426 LDCIERRLLVLSQCCYVIMDEADRMIDLGFEESVNKILDALPVTNEKPDTDEAENAQIMQ 485 Query 302 ALAALQDFYHREHVTKTQILCAERRLLALFDDRKNEL-------------AHLATHGPEN 348 +D Y + + + R+ + R + + E+ Sbjct 486 RYLGGRDRYRQTMMYTATMPPLVERIAKKYLRRPAIVTIGNAGEAVDTVEQRVEFVSGED 545 Query 349 PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN 408 + + L++IL S + P I+F +++ ++ ++Q +G Sbjct 546 RRKKRLQEILS---SGNFGPPIIVFVNIKRNCDAVARDIKQ--------------MGWSA 588 Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 + TQ ++ + + G +LVAT +A G+D+P ++VV + + TN S Sbjct 589 VTLHGSKTQEQREAALGSVRAGHTQVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHR 648 Query 469 RGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQAE 517 GR RA +S A E +L ++ + + +++ + A+ Sbjct 649 IGRTGRAGKSGVAITFLGPEDHETMYDLKQILSKSSISKVPEELRRHEAAQ 699 Score = 59.0 bits (141), Expect = 1e-07, Method: Composition-based stats. Identities = 26/139 (19%), Positives = 51/139 (37%), Gaps = 14/139 (10%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT---------RAAAYVAKRHLETVDGAKVVVLVNRV 57 Q I AL+ +++I TG+GKT + + DG +++ Sbjct 315 QRAAIPIALQARDLIGVAVTGSGKTAAFLLPLLVYISDLPPLDEINKHDGPYALIMAPTR 374 Query 58 HLVTQHGEEFRRM-LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE 116 LV Q E R+ + V ++ G +L ++++ T L + E Sbjct 375 ELVQQIETEARKFAGPLGFRVVSIVGGHQIEEQAYNLRDGAEIVVATPGRLLDCI----E 430 Query 117 EEHVELTVFSLIVVDECHH 135 + L+ +++DE Sbjct 431 RRLLVLSQCCYVIMDEADR 449 >sp|Q07736|T1RA_ECOLX Type I restriction enzyme EcoAI endonuclease subunit OS=Escherichia coli OX=562 GN=hsdR PE=1 SV=1 Length=810 Score = 109 bits (271), Expect = 2e-23, Method: Composition-based stats. Identities = 48/183 (26%), Positives = 76/183 (42%), Gaps = 34/183 (19%) Query 2 ELRSYQWEVIMPALE----GKN-IIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNR 56 R YQ + I +E G+N +++ + TG GKT A + R ++ + +++ L +R Sbjct 169 SPRYYQLQAINKTIEAVSNGQNRVLLVMATGTGKTYTAFQIIWRLWKSKNKKRILFLADR 228 Query 57 VHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE 116 LV Q +T +SG A HLA L A+T PEE Sbjct 229 NILVDQTKN--NDFQPFGTAMTKVSGRTIDPAYEIHLA------------LYQAITGPEE 274 Query 117 EE----HVELTVFSLIVVDECHH--THKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASP 170 ++ V F LIV+DECH +D+ + I+ + +GLTA+P Sbjct 275 DQKAFKQVAPDFFDLIVIDECHRGSASEDSAWREILDYFSSATQ---------IGLTATP 325 Query 171 GTG 173 Sbjct 326 KET 328 Score = 45.6 bits (106), Expect = 0.001, Method: Composition-based stats. Identities = 26/208 (13%), Positives = 66/208 (32%), Gaps = 17/208 (8%) Query 329 ALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNS-PRGIIFTRTRQSAHSLLLWL 387 + DDR + + E++ + + +N + I+F A + L Sbjct 384 EVIDDRIYNQKDFDRTMVIDERTELVARTITDYLKRTNPMDKTIVFCNDIDHAERMRRAL 443 Query 388 QQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGT--LNLLVATS-VAEEG 444 Q + + Q + F + ++ TS + G Sbjct 444 VNLNPEQVK--KNDKYVMKITGDDEIGKAQ------LDNFINPKKPYPVIATTSELMTTG 495 Query 445 LDIPHCNVVVRYGLLTNEISMVQARGRA-----RADQSVYAFVATEGSRELKRELINEAL 499 +D C +VV + + Q GR R + + + + + EL + + + Sbjct 496 VDAKTCKLVVLDQNIQSMTKFKQIIGRGTRIDERYGKLWFTILDFKKATELFADERFDGI 555 Query 500 ETLMEQAVAAVQKMDQAEYQAKIRDLQQ 527 + +++++ K+ ++ + Sbjct 556 PEKVMDTTPEDIADPESDFEEKLEEISE 583 >sp|A5E058|PRP5_LODEL Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) OX=379508 GN=PRP5 PE=3 SV=1 Length=994 Score = 109 bits (272), Expect = 2e-23, Method: Composition-based stats. Identities = 64/356 (18%), Positives = 132/356 (37%), Gaps = 45/356 (13%) Query 164 LGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHR 223 +GL SP A +++ I +L C N Q+ E ++ Sbjct 463 IGLVLSPTRELALQIEKEILKFSST-MDLKVCCCYGGSNIENQISE-LKRGVNVIVATPG 520 Query 224 RSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKL--SEAAALAGLQEQRVYA 281 R D ++ + + + + +E Q+ K+ + + Sbjct 521 RLIDLLAANGGRITTLRRTTFVVLDEADRMFDMGFEPQIQKIFTQIRPDKQTVLFSATFP 580 Query 282 LHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHL 341 L + +L ++ V ++I + + LF+D + H Sbjct 581 RKLEQLAKKVL----------HNPIEIIVGGVSVVASEI----SQEIILFEDTDQLMNH- 625 Query 342 ATHGPENPKLEMLEKILQRQFS-SSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRA 400 K++ LE IL R F N+ + ++F + A L+ L ++ I Sbjct 626 --------KIQKLEDILSRFFDLGKNTGKVLVFVEKQTDADKLVSVLLKKA------IPC 671 Query 401 QLLIGAGNSSQSTHMTQRDQQEVIQKFQDGT--LNLLVATSVAEEGLDIPHCNVVVRYGL 458 + G Q D++ I++F D +N+L+ATS+A GLD+ + ++VV + Sbjct 672 IAIHG--------GKDQIDRKHAIREFSDDQSGINVLIATSIAARGLDVRNLDLVVNFEP 723 Query 459 LTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM 513 ++ V GR RA + A + ++E + ++ +AL+ + +Q++ Sbjct 724 PSHLEDYVHRVGRTGRAGKHGEAITFVDNTQEKEISILVKALKMSSRAVDSKLQEI 779 Score = 47.5 bits (111), Expect = 4e-04, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 49/136 (36%), Gaps = 8/136 (6%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETV------DGAKVVVLVNRVHLV 60 Q + I L G+++I TG+GKT + RH++ +G +VL L Sbjct 415 QCQAIPIVLSGRDMIGVAKTGSGKTLSYVLPMVRHIQDQLFPKPGEGPIGLVLSPTRELA 474 Query 61 TQHGEEFRRM-LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 Q +E + V G L R ++++ T L L + Sbjct 475 LQIEKEILKFSSTMDLKVCCCYGGSNIENQISELKRGVNVIVATPGRLIDLLAANGGR-I 533 Query 120 VELTVFSLIVVDECHH 135 L + +V+DE Sbjct 534 TTLRRTTFVVLDEADR 549 >sp|Q9FZ92|RH44_ARATH Putative DEAD-box ATP-dependent RNA helicase 44 OS=Arabidopsis thaliana OX=3702 GN=RH44 PE=5 SV=2 Length=622 Score = 108 bits (269), Expect = 3e-23, Method: Composition-based stats. Identities = 52/331 (16%), Positives = 105/331 (32%), Gaps = 66/331 (20%) Query 220 LCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKF---------GTQMYEQQVVKLSEAAA 270 +++ P+ ++ + H E ++ G + E+Q +KLS+ Sbjct 279 REENQTEGPYALVMVPTRELAHQIEEETVKFSRYLGFKAVSITGWESIEKQALKLSQGCE 338 Query 271 LAGLQEQRVYALHLRRYN-----DALLIHDTVRAVD------------------------ 301 + R+ RRY + L++ + R +D Sbjct 339 IVIATPGRLLDCLERRYVVLNQCNYLVLDEADRMIDMDFEPQVSEVLDVMPCSNLKPEKE 398 Query 302 -ALAALQDFYHREHVTKTQILCAERRLLALFDDRK---------NELAHLATHGPENPKL 351 + Y ++ +L + RL F + E+ K Sbjct 399 DEELEEKKIYRTTYMFSATMLLSVERLARKFLRNPVVVTIGETTKFITQQVIMTKESDKF 458 Query 352 EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ 411 L+K++ + I+F TR ++ L++ + + A Sbjct 459 SRLKKLIDDL---GDDKTAIVFVNTRNKVDYIVKNLEKVGRCRVTTLHA----------- 504 Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 +Q + +++F+ N+LV T V GLDI V+ Y + GR Sbjct 505 --GKSQEQRDYSLEEFKKKRFNVLVTTDVLGRGLDILDLAQVINYDMPNTMDLYTHRIGR 562 Query 472 -ARADQSVYA-FVATEGSRELKRELINEALE 500 RA ++ A T +++ L + E Sbjct 563 TGRAGKTGVATTFLTLEDKDVFYGLKQKLNE 593 Score = 57.1 bits (136), Expect = 3e-07, Method: Composition-based stats. Identities = 30/144 (21%), Positives = 58/144 (40%), Gaps = 15/144 (10%) Query 2 ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK---------VVV 52 +R+++ E I LE +++I TG+GKT A ++ + + +V Sbjct 233 PMRNWE-ETIPLGLEQRDVIGISATGSGKTAAFVLPMLAYISRLPPMREENQTEGPYALV 291 Query 53 LVNRVHLVTQHGEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMAL 111 +V L Q EE + + +++G L++ +++I T L L Sbjct 292 MVPTRELAHQIEEETVKFSRYLGFKAVSITGWESIEKQALKLSQGCEIVIATPGRLLDCL 351 Query 112 TSPEEEEHVELTVFSLIVVDECHH 135 E +V L + +V+DE Sbjct 352 ----ERRYVVLNQCNYLVLDEADR 371 >sp|Q47281|T1RE_ECOLX Type I restriction enzyme EcoEI endonuclease subunit OS=Escherichia coli OX=562 GN=hsdR PE=3 SV=1 Length=813 Score = 108 bits (269), Expect = 5e-23, Method: Composition-based stats. Identities = 48/184 (26%), Positives = 74/184 (40%), Gaps = 34/184 (18%) Query 2 ELRSYQWEVIMPALE----GKN-IIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNR 56 R YQ + I ++ GKN I++ + TG GKT A + R + + +++ L +R Sbjct 167 APRYYQMQAINRTVDAVSAGKNRILLVMATGTGKTYTAFQIIWRLWKAKNKKRILFLADR 226 Query 57 VHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE 116 LV Q +T ++G A HLA L A+T PEE Sbjct 227 NILVDQTKR--NDFQPFGNAMTKVTGRTIDPAYEVHLA------------LYQAITGPEE 272 Query 117 EE----HVELTVFSLIVVDECHH--THKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASP 170 + V F LIV+DECH +D+ + I+ + +GLTA+P Sbjct 273 HQKAYKQVAPDFFDLIVIDECHRGSASEDSAWREILEYFGSATQ---------VGLTATP 323 Query 171 GTGG 174 Sbjct 324 KETE 327 Score = 35.5 bits (80), Expect = 2.0, Method: Composition-based stats. Identities = 26/186 (14%), Positives = 56/186 (30%), Gaps = 12/186 (6%) Query 363 SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE 422 ++ + I+F A + L Q ++ + + Q Sbjct 417 RTNPMDKTIVFCNDIDHADRMRHALVVLNPEQV--LKNEKYVMKITGDDDIGKAQ----- 469 Query 423 VIQKFQD--GTLNLLVATS-VAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA-RADQSV 478 + F + ++ TS + G+D C +VV + + Q GR R ++ Sbjct 470 -LDNFINPKKAYPVIATTSELMTTGVDAQTCKLVVLDQNIQSMTKFKQIIGRGTRINEKH 528 Query 479 YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA 538 T + EL + + + V V+ D ++ + + A Sbjct 529 GKLWFTILDFKKATELFADPRFDGLPEKVLVVKPGDISDKDSDFNEQLDAENNADGGDND 588 Query 539 QRENQR 544 E + Sbjct 589 ASEARE 594 >sp|Q553B1|DDX46_DICDI ATP-dependent RNA helicase ddx46 OS=Dictyostelium discoideum OX=44689 GN=helB1 PE=2 SV=1 Length=1151 Score = 108 bits (270), Expect = 5e-23, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 85/223 (38%), Gaps = 19/223 (9%) Query 313 EHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGII 372 E+V K + + +++ P + L ++L + + + +I Sbjct 705 ENVAKKILNKPLEIIAGGRSIVSSDIEQFVEVRPTETRFRRLIELLSIWY---HKGQILI 761 Query 373 FTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTL 432 FT +++ +L L Q + L G+ + Q D+ E I F++ Sbjct 762 FTNRQETTDNLYRQLSNSQ------YQCLSLHGSKD--------QTDRDETISDFKNKVK 807 Query 433 NLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELK 491 +L+AT +A GLDI N+VV + + V GR RA A+ E Sbjct 808 TILIATPLASRGLDIKDLNLVVNFDCPDHLEDYVHRVGRTGRAGNRGTAYTFITPDEERF 867 Query 492 RELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRA 534 I +ALE + ++K++ Y+ K ++ + L Sbjct 868 SSSIIKALEQSGSKVPDELRKLNDT-YEKKRKEGKDVLLAPTG 909 Score = 56.3 bits (134), Expect = 7e-07, Method: Composition-based stats. Identities = 51/372 (14%), Positives = 119/372 (32%), Gaps = 18/372 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK------VVVLVNRVHLV 60 Q + I + G+++I TG+GKT A RH+ + +++ L Sbjct 536 QAQTIPAIMNGRDLIGIARTGSGKTLAFLLPMFRHILAQPKSAPGEGMIALIMSPTRELA 595 Query 61 TQHGEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 Q E ++ + G L R D+++CT + L + Sbjct 596 LQIHVECKKFSKVLGLRTACVYGGASISEQIAELKRGADIVVCTPGRMIDILCANNRR-I 654 Query 120 VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLD 179 L + +V+DE D ++++ + + +P Q + +A+ + Sbjct 655 TNLRRVTFLVLDEA-----DRMFDMGFGPQINCIVDSIRPDRQTIMFSATFPPKVENVAK 709 Query 180 GAINHVLQLCA---NLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKL 236 +N L++ A ++ + I P + ++ + ++ + + Q ++ Sbjct 710 KILNKPLEIIAGGRSIVSSDIEQFVEVRP-TETRFRRLIELLSIWYHKGQILIFTNRQET 768 Query 237 MDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDT 296 D ++ L + + Q + + + + A L + + Sbjct 769 TDNLYRQLSNSQYQC-LSLHGSKDQTDRDETISDFKNKVKTILIATPLASRGLDIKDLNL 827 Query 297 VRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEK 356 V D L+D+ HR T D+ + + + K+ + Sbjct 828 VVNFDCPDHLEDYVHRVGRTGRAGNRGTAYTFITPDEERFSSSIIKALEQSGSKVPDELR 887 Query 357 ILQRQFSSSNSP 368 L + Sbjct 888 KLNDTYEKKRKE 899 >sp|Q09747|DBP5_SCHPO ATP-dependent RNA helicase dbp5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=dbp5 PE=1 SV=1 Length=503 Score = 106 bits (265), Expect = 5e-23, Method: Composition-based stats. Identities = 44/325 (14%), Positives = 112/325 (34%), Gaps = 45/325 (14%) Query 228 PFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAG-------LQEQRVY 280 P +L +++MD + + + E+ FG + + K+ + ++ +++ Sbjct 192 PSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLD 251 Query 281 ALHLRRYN---------DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALF 331 A ++ + L ++R L ++ R Sbjct 252 ARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNA 311 Query 332 DDRKNELAHLATHGPEN-----PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLW 386 ++ + + L+ G + E +L + + IIF + + +A + Sbjct 312 NEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARR 371 Query 387 LQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLD 446 + G + + ++ + ++ F+ GT +LV T+V G+D Sbjct 372 MTAD--------------GHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGID 417 Query 447 IPHCNVVVRYGLL------TNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEAL 499 + N+VV Y + + + + GR R + + + E +N A+ Sbjct 418 VSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKS--WEEMN-AI 474 Query 500 ETLMEQAVAAVQKMDQAEYQAKIRD 524 + ++ + V D E + +++ Sbjct 475 QEYFQRPITRVPTDDYEELEKVVKN 499 >sp|Q0UWC8|PRP28_PHANO Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) OX=321614 GN=PRP28 PE=3 SV=1 Length=746 Score = 107 bits (268), Expect = 5e-23, Method: Composition-based stats. Identities = 34/179 (19%), Positives = 77/179 (43%), Gaps = 20/179 (11%) Query 341 LATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRA 400 G E K + L++IL S +P I+F +++ ++ ++ Sbjct 573 EHIQGEEKRK-KRLQEILN---SGEFTPPIIVFVNIKRNCDAIARDIKN----------- 617 Query 401 QLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT 460 +G + + TQ ++ + + ++ +++LVAT +A G+DI ++VV + + T Sbjct 618 ---MGFSSVTLHGSKTQEQREAALAQLREHRVDVLVATDLAGRGIDITDVSLVVNFNMAT 674 Query 461 NEISMVQARGR-ARADQSVYAFVA-TEGSRELKRELINEALETLMEQAVAAVQKMDQAE 517 + S GR RA +S A ++ +L ++ + + ++K + A+ Sbjct 675 SIESYTHRIGRTGRAGKSGVAITFWGNEDADVLYDLKQMLTKSQISKVPEDLRKHEAAQ 733 Score = 53.3 bits (126), Expect = 7e-06, Method: Composition-based stats. Identities = 25/140 (18%), Positives = 48/140 (34%), Gaps = 16/140 (11%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVD---------GAKVVVLVNRV 57 Q I AL+ +++I TG+GKT + ++ + G +VL Sbjct 354 QRAAIPIALQCRDLIGVAVTGSGKTASFVLPLLVYISQLPPLGPSNRADGPYAIVLAPTR 413 Query 58 HLVTQHGEEFRRML--DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE 115 L Q E R + + G + +++I T L + Sbjct 414 EL-AQQIEVETRKFAAPLGFNTAVIVGGHSIEEQAFQMRDGAEIVIATPGRLVDCI---- 468 Query 116 EEEHVELTVFSLIVVDECHH 135 E + L+ + +++DE Sbjct 469 ERRMLVLSQCTYVIMDEADR 488 >sp|Q4I830|DRS1_GIBZE ATP-dependent RNA helicase DRS1 OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=DRS1 PE=3 SV=2 Length=792 Score = 107 bits (268), Expect = 6e-23, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 90/230 (39%), Gaps = 27/230 (12%) Query 343 THGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL 402 G E+ ++ L + + + R IIF R ++ AH + Sbjct 481 RPGREDKRMGYLAHVCKNLYKE----RVIIFFRQKKDAHRARIIFG-------------- 522 Query 403 LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE 462 L+G + M Q + ++ F+DG + L+AT +A GLDI + V+ Y + Sbjct 523 LLGLSCAELHGSMNQTQRISSVEDFRDGKVAYLLATDLASRGLDIKGVDTVINYEAPQSL 582 Query 463 ISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA 520 V GR ARA + A +A E R++ + + + A +++D E A Sbjct 583 DIYVHRVGRTARAGRKGVALTIAAESDRKVVKAAVKAGK---AQGAKIVSRQLDSGEVDA 639 Query 521 KIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQLLCINCMVAVGHGSDLR 570 LQ E ++++ + HV++ + H ++++ Sbjct 640 ----LQTQIDEMDDEIDEIMEEEKEEKQLAHVEMQVKKGENMIQHEAEIK 685 Score = 56.0 bits (133), Expect = 9e-07, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 52/136 (38%), Gaps = 12/136 (9%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHL----ETVDGAKVVVLVNRVHLVTQ 62 Q + I AL GK+++ TG+GKT A L + + +VVVL+ L Q Sbjct 283 QAKSIPIALMGKDVVGGAETGSGKTGAFILPILERLLYRPKKIPTTRVVVLLPTRELAIQ 342 Query 63 HGEE---FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 D ++T+ G + +A L D++I T + + Sbjct 343 CHAVATKLAAFTDIKFTLAV--GGLSLKAQELELKLRPDVIIATPGRFIDHMRNS---AS 397 Query 120 VELTVFSLIVVDECHH 135 + ++V+DE Sbjct 398 FSVDTVEILVLDEADR 413 >sp|Q84TG1|RH57_ARATH DEAD-box ATP-dependent RNA helicase 57 OS=Arabidopsis thaliana OX=3702 GN=RH57 PE=2 SV=1 Length=541 Score = 106 bits (265), Expect = 7e-23, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 86/224 (38%), Gaps = 26/224 (12%) Query 288 NDALLIHDTVRAVDAL--AALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG 345 +D L ++ +D + A R + T E ++ D + Sbjct 291 SDKLFEQSLLKQIDCVVKACSNPSIIRSLFSATLPDSVEELARSIMHDAVRVIIGRKNTA 350 Query 346 PENPKLEMLEK--------ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD 397 E K +++ L++ F+ S +P +IF ++++ A L L+ + Sbjct 351 SETVKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKEL------YDELKCEN 404 Query 398 IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG 457 IRA ++ + + +++ + +F+ G +L+AT V G+D N V+ Y Sbjct 405 IRAGVI--------HSDLPPGERENAVDQFRAGEKWVLIATDVIARGMDFKGINCVINYD 456 Query 458 LLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEAL 499 + + + GR RA +S A TE R + N + Sbjct 457 FPDSASAYIHRIGRSGRAGRSGEAITFYTEQDVPFLRNIANTMM 500 Score = 60.2 bits (144), Expect = 4e-08, Method: Composition-based stats. Identities = 32/129 (25%), Positives = 58/129 (45%), Gaps = 9/129 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT--RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHG 64 Q + I L G+ PTG+GKT + K + DG + V+L L Q Sbjct 168 QRQAIPILLSGRECFACAPTGSGKTFAFICPMLIKLKRPSTDGIRAVILSPARELAAQTA 227 Query 65 EEFRRMLDGR-WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELT 123 E ++++ G + + ++ + A F L D+LI T L+ A+ + + ++L+ Sbjct 228 REGKKLIKGSNFHIRLMTKPLVKTADFSKLW--CDVLISTPMRLKRAIKAKK----IDLS 281 Query 124 VFSLIVVDE 132 +V+DE Sbjct 282 KVEYLVLDE 290 >sp|Q12099|FAL1_YEAST ATP-dependent RNA helicase FAL1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=FAL1 PE=1 SV=1 Length=399 Score = 104 bits (260), Expect = 8e-23, Method: Composition-based stats. Identities = 52/335 (16%), Positives = 106/335 (32%), Gaps = 31/335 (9%) Query 165 GLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRR 224 G TA+ G +D + L I+SP + Y + Sbjct 72 GKTATFTIGLLQAIDLRKKDLQAL--------ILSPTRELASQIGQVVKNLGDYMNVNAF 123 Query 225 SQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHL 284 + L L + + M ++Q+++ L + + + L Sbjct 124 AITGGKTLKDDLKKMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETL 183 Query 285 RRYNDALLIHDTVRAVDALAALQDFYHRE--HVTKTQILCAERRLLALFDDRKNELAHLA 342 I + + + +++ VT+ + + L+ + + Sbjct 184 GFKQQIYDIFAKLPKNCQVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYV 243 Query 343 TH-GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQ 401 + E K + L I + S + +IF T++ L L Q Sbjct 244 VNVDKEEWKFDTLCDI----YDSLTITQCVIFCNTKKKVDWLSQRLIQSN---------- 289 Query 402 LLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN 461 S M Q ++ +V+ F+ G +L++T V G+D+ ++V+ Y L Sbjct 290 ----FAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEI 345 Query 462 EISMVQARGR-ARADQSVYAF-VATEGSRELKREL 494 + + GR R + A T+ RE+ Sbjct 346 IENYIHRIGRSGRFGRKGVAINFITKADLAKLREI 380 Score = 39.8 bits (91), Expect = 0.078, Method: Composition-based stats. Identities = 19/130 (15%), Positives = 48/130 (37%), Gaps = 7/130 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q I + GK++I +G GKT + + + ++L L +Q G+ Sbjct 50 QSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQIGQ 109 Query 66 EFRRMLD-GRWTVTTLSGDMGPRAGFGHLAR-CHDLLICTAELLQMALTSPEEEEHVELT 123 + + D ++G + + + + T + + +++ ++ Sbjct 110 VVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQAVSGTPGRVLDMI----KKQMLQTR 165 Query 124 VFSLIVVDEC 133 ++V+DE Sbjct 166 NVQMLVLDEA 175 >sp|A6ZXY5|FAL1_YEAS7 ATP-dependent RNA helicase FAL1 OS=Saccharomyces cerevisiae (strain YJM789) OX=307796 GN=FAL1 PE=3 SV=1 Length=399 Score = 104 bits (260), Expect = 8e-23, Method: Composition-based stats. Identities = 52/335 (16%), Positives = 106/335 (32%), Gaps = 31/335 (9%) Query 165 GLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRR 224 G TA+ G +D + L I+SP + Y + Sbjct 72 GKTATFTIGLLQAIDLRKKDLQAL--------ILSPTRELASQIGQVVKNLGDYMNVNAF 123 Query 225 SQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHL 284 + L L + + M ++Q+++ L + + + L Sbjct 124 AITGGKTLKDDLKKMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETL 183 Query 285 RRYNDALLIHDTVRAVDALAALQDFYHRE--HVTKTQILCAERRLLALFDDRKNELAHLA 342 I + + + +++ VT+ + + L+ + + Sbjct 184 GFKQQIYDIFAKLPKNCQVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYV 243 Query 343 TH-GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQ 401 + E K + L I + S + +IF T++ L L Q Sbjct 244 VNVDKEEWKFDTLCDI----YDSLTITQCVIFCNTKKKVDWLSQRLIQSN---------- 289 Query 402 LLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN 461 S M Q ++ +V+ F+ G +L++T V G+D+ ++V+ Y L Sbjct 290 ----FAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEI 345 Query 462 EISMVQARGR-ARADQSVYAF-VATEGSRELKREL 494 + + GR R + A T+ RE+ Sbjct 346 IENYIHRIGRSGRFGRKGVAINFITKADLAKLREI 380 Score = 39.8 bits (91), Expect = 0.078, Method: Composition-based stats. Identities = 19/130 (15%), Positives = 48/130 (37%), Gaps = 7/130 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q I + GK++I +G GKT + + + ++L L +Q G+ Sbjct 50 QSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQIGQ 109 Query 66 EFRRMLD-GRWTVTTLSGDMGPRAGFGHLAR-CHDLLICTAELLQMALTSPEEEEHVELT 123 + + D ++G + + + + T + + +++ ++ Sbjct 110 VVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQAVSGTPGRVLDMI----KKQMLQTR 165 Query 124 VFSLIVVDEC 133 ++V+DE Sbjct 166 NVQMLVLDEA 175 >sp|A5DWJ1|FAL1_LODEL ATP-dependent RNA helicase FAL1 OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) OX=379508 GN=FAL1 PE=3 SV=1 Length=399 Score = 104 bits (260), Expect = 9e-23, Method: Composition-based stats. Identities = 43/322 (13%), Positives = 105/322 (33%), Gaps = 39/322 (12%) Query 217 QYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEAAALAGL 274 + C P +L ++ + I + + G + + +L + + Sbjct 91 KSKECQALVLSPTRELATQIQNVIKHLGDYMNIQTYACIGGKNVGTDIKRLQQGQQIVSG 150 Query 275 QEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLL--ALFD 332 RV + RR I + + F + + + + ++ A Sbjct 151 TPGRVLDVIKRRNLSTRHIKMLILDEADELFTKGFKEQIYEIYKHLPPGVQVVVVSATLT 210 Query 333 DRKNELAHLATHGPEN--------------------PKLEMLEKILQRQFSSSNSPRGII 372 E+ T P K + L + + + +I Sbjct 211 HEVLEMTGKFTTDPVKILVKREEVSLSGIKQYYIQCEKEDWKFDTLCDLYDNLTITQAVI 270 Query 373 FTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTL 432 F T+ + L +++Q + + G M Q ++ ++ F+ G Sbjct 271 FCNTKIKVNWLTDQMRKQ------NFTVVAMHG--------DMKQEERDAIMNDFRSGNS 316 Query 433 NLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELK 491 +L++T V G+D+ ++V+ Y L ++ + + GR R + A S ++ Sbjct 317 RVLISTDVWARGIDVQQISLVINYDLPLDKENYIHRIGRSGRFGRKGTAINLLTKSDTIE 376 Query 492 RELINEALETLMEQAVAAVQKM 513 + + + T +++ + V + Sbjct 377 LKALEKYYSTKIKEMPSNVNDV 398 Score = 47.9 bits (112), Expect = 2e-04, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 45/129 (35%), Gaps = 6/129 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG-AKVVVLVNRVHLVTQHGE 65 Q IM + G++ I +G GKT + L++ + +VL L TQ Sbjct 53 QSRAIMQIISGRDTIAQAQSGTGKTATFSIGMLEVLDSKSKECQALVLSPTRELATQIQN 112 Query 66 EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 + + D T G L + ++ T + + + ++ Sbjct 113 VIKHLGDYMNIQTYACIGGKNVGTDIKRLQQGQQIVSGTPGRVLDVI----KRRNLSTRH 168 Query 125 FSLIVVDEC 133 ++++DE Sbjct 169 IKMLILDEA 177 >sp|P0CR02|DBP8_CRYNJ ATP-dependent RNA helicase DBP8 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=DBP8 PE=3 SV=1 Length=619 Score = 106 bits (265), Expect = 1e-22, Method: Composition-based stats. Identities = 41/193 (21%), Positives = 79/193 (41%), Gaps = 19/193 (10%) Query 359 QRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQR 418 + + + + P +IFT+ +AH L ++DI + +H+TQ Sbjct 430 KEEEDAPSVPSTVIFTQRCATAH------LLHLLLNSLDI--------PSVPLHSHLTQP 475 Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQS 477 + + +F+ + +LV T V GLDIP +V+ + V GR ARA + Sbjct 476 QRLLSLARFRAHEVPVLVTTDVGSRGLDIPEVAMVINWDCPRRSDDYVHRVGRTARAGRG 535 Query 478 VYAF-VATEGSRELKR---ELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKR 533 A + TE EL + + +N LE L ++ +++ ++ ++ Sbjct 536 GVAVTIITERDTELVKIIEDEVNVRLEELKLDEDKVLEGLNKVSLARRMATMEMHDSGFG 595 Query 534 AAQAAQRENQRQQ 546 QA + Q ++ Sbjct 596 ERQATNKAKQIKR 608 Score = 55.2 bits (131), Expect = 2e-06, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 49/131 (37%), Gaps = 3/131 (2%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q + P L G++ I TG+GKT A A + +R G VVL L Q E Sbjct 179 QAACVEPILSGRDCIGGAKTGSGKTMAFALPIVERIARDPFGVWAVVLTPTRELAYQLSE 238 Query 66 EFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 +F + T T+ G M L +++ T L L +L+ Sbjct 239 QFLVIGKPLGLTTATIVGGMDMMKQAQELEARPHIIVATPGRLCD-LLRSGGVGPGKLSR 297 Query 125 FSLIVVDECHH 135 +V+DE Sbjct 298 VRTLVLDEADR 308 >sp|Q5R6D8|DDX46_PONAB Probable ATP-dependent RNA helicase DDX46 OS=Pongo abelii OX=9601 GN=DDX46 PE=2 SV=1 Length=1032 Score = 107 bits (267), Expect = 1e-22, Method: Composition-based stats. Identities = 43/152 (28%), Positives = 60/152 (39%), Gaps = 15/152 (10%) Query 363 SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE 422 S IIF ++ A LL L + L G + Q D+ Sbjct 615 HYQESGSVIIFVDKQEHADGLLKDLMR------ASYPCMSLHG--------GIDQYDRDS 660 Query 423 VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF 481 +I F++GT LLVATSVA GLD+ H +VV Y + V GR RA YA+ Sbjct 661 IINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAY 720 Query 482 VATEGSRELKRELINEALETLMEQAVAAVQKM 513 + I +ALE ++K+ Sbjct 721 TFITEDQARYAGDIIKALELSGTAVPPDLEKL 752 Score = 60.6 bits (145), Expect = 4e-08, Method: Composition-based stats. Identities = 31/137 (23%), Positives = 54/137 (39%), Gaps = 10/137 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYV-AKRH------LETVDGAKVVVLVNRVHL 59 Q + I + G+++I TG+GKT A + RH LE +G V++ L Sbjct 399 QTQAIPAIMSGRDLIGIAKTGSGKT-IAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTREL 457 Query 60 VTQHGEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEE 118 Q +E ++ V + G G L R ++++CT + L + Sbjct 458 ALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGR- 516 Query 119 HVELTVFSLIVVDECHH 135 L + +V+DE Sbjct 517 VTNLRRVTYVVLDEADR 533 >sp|Q7L014|DDX46_HUMAN Probable ATP-dependent RNA helicase DDX46 OS=Homo sapiens OX=9606 GN=DDX46 PE=1 SV=2 Length=1031 Score = 107 bits (267), Expect = 1e-22, Method: Composition-based stats. Identities = 43/152 (28%), Positives = 60/152 (39%), Gaps = 15/152 (10%) Query 363 SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE 422 S IIF ++ A LL L + L G + Q D+ Sbjct 615 HYQESGSVIIFVDKQEHADGLLKDLMR------ASYPCMSLHG--------GIDQYDRDS 660 Query 423 VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF 481 +I F++GT LLVATSVA GLD+ H +VV Y + V GR RA YA+ Sbjct 661 IINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAY 720 Query 482 VATEGSRELKRELINEALETLMEQAVAAVQKM 513 + I +ALE ++K+ Sbjct 721 TFITEDQARYAGDIIKALELSGTAVPPDLEKL 752 Score = 60.6 bits (145), Expect = 4e-08, Method: Composition-based stats. Identities = 31/137 (23%), Positives = 54/137 (39%), Gaps = 10/137 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYV-AKRH------LETVDGAKVVVLVNRVHL 59 Q + I + G+++I TG+GKT A + RH LE +G V++ L Sbjct 399 QTQAIPAIMSGRDLIGIAKTGSGKT-IAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTREL 457 Query 60 VTQHGEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEE 118 Q +E ++ V + G G L R ++++CT + L + Sbjct 458 ALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGR- 516 Query 119 HVELTVFSLIVVDECHH 135 L + +V+DE Sbjct 517 VTNLRRVTYVVLDEADR 533 >sp|P0CR03|DBP8_CRYNB ATP-dependent RNA helicase DBP8 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=DBP8 PE=3 SV=1 Length=619 Score = 106 bits (265), Expect = 1e-22, Method: Composition-based stats. Identities = 41/192 (21%), Positives = 78/192 (41%), Gaps = 19/192 (10%) Query 360 RQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRD 419 + + + P +IFT+ +AH L ++DI + +H+TQ Sbjct 431 EEEDAPSVPSTVIFTQRCATAH------LLHLLLNSLDI--------PSVPLHSHLTQPQ 476 Query 420 QQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSV 478 + + +F+ + +LV T V GLDIP +V+ + V GR ARA + Sbjct 477 RLLSLARFRAHEVPVLVTTDVGSRGLDIPEVAMVINWDCPRRSDDYVHRVGRTARAGRGG 536 Query 479 YAF-VATEGSRELKR---ELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRA 534 A + TE EL + + +N LE L ++ +++ ++ ++ Sbjct 537 VAVTIITERDTELVKIIEDEVNVRLEELKLDEDKVLEGLNKVSLARRMATMEMHDSGFGE 596 Query 535 AQAAQRENQRQQ 546 QA + Q ++ Sbjct 597 RQATNKAKQIKR 608 Score = 55.2 bits (131), Expect = 2e-06, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 49/131 (37%), Gaps = 3/131 (2%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q + P L G++ I TG+GKT A A + +R G VVL L Q E Sbjct 179 QAACVEPILSGRDCIGGAKTGSGKTMAFALPIVERIARDPFGVWAVVLTPTRELAYQLSE 238 Query 66 EFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 +F + T T+ G M L +++ T L L +L+ Sbjct 239 QFLVIGKPLGLTTATIVGGMDMMKQAQELEARPHIIVATPGRLCD-LLRSGGVGPGKLSR 297 Query 125 FSLIVVDECHH 135 +V+DE Sbjct 298 VRTLVLDEADR 308 >sp|Q62780|DDX46_RAT Probable ATP-dependent RNA helicase DDX46 OS=Rattus norvegicus OX=10116 GN=Ddx46 PE=1 SV=1 Length=1032 Score = 107 bits (267), Expect = 1e-22, Method: Composition-based stats. Identities = 43/152 (28%), Positives = 60/152 (39%), Gaps = 15/152 (10%) Query 363 SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE 422 S IIF ++ A LL L + L G + Q D+ Sbjct 615 HYQESGSVIIFVDKQEHADGLLKDLMR------ASYPCMSLHG--------GIDQYDRDS 660 Query 423 VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF 481 +I F++GT LLVATSVA GLD+ H +VV Y + V GR RA YA+ Sbjct 661 IINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAY 720 Query 482 VATEGSRELKRELINEALETLMEQAVAAVQKM 513 + I +ALE ++K+ Sbjct 721 TFITEDQARYAGDIIKALELSGTAVPPDLEKL 752 Score = 60.6 bits (145), Expect = 4e-08, Method: Composition-based stats. Identities = 31/137 (23%), Positives = 54/137 (39%), Gaps = 10/137 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYV-AKRH------LETVDGAKVVVLVNRVHL 59 Q + I + G+++I TG+GKT A + RH LE +G V++ L Sbjct 399 QTQAIPAIMSGRDLIGIAKTGSGKT-IAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTREL 457 Query 60 VTQHGEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEE 118 Q +E ++ V + G G L R ++++CT + L + Sbjct 458 ALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGR- 516 Query 119 HVELTVFSLIVVDECHH 135 L + +V+DE Sbjct 517 VTNLRRVTYVVLDEADR 533 >sp|Q569Z5|DDX46_MOUSE Probable ATP-dependent RNA helicase DDX46 OS=Mus musculus OX=10090 GN=Ddx46 PE=1 SV=2 Length=1032 Score = 107 bits (267), Expect = 1e-22, Method: Composition-based stats. Identities = 43/152 (28%), Positives = 60/152 (39%), Gaps = 15/152 (10%) Query 363 SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE 422 S IIF ++ A LL L + L G + Q D+ Sbjct 615 HYQESGSVIIFVDKQEHADGLLKDLMR------ASYPCMSLHG--------GIDQYDRDS 660 Query 423 VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF 481 +I F++GT LLVATSVA GLD+ H +VV Y + V GR RA YA+ Sbjct 661 IINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAY 720 Query 482 VATEGSRELKRELINEALETLMEQAVAAVQKM 513 + I +ALE ++K+ Sbjct 721 TFITEDQARYAGDIIKALELSGTAVPPDLEKL 752 Score = 60.6 bits (145), Expect = 4e-08, Method: Composition-based stats. Identities = 31/137 (23%), Positives = 54/137 (39%), Gaps = 10/137 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYV-AKRH------LETVDGAKVVVLVNRVHL 59 Q + I + G+++I TG+GKT A + RH LE +G V++ L Sbjct 399 QTQAIPAIMSGRDLIGIAKTGSGKT-IAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTREL 457 Query 60 VTQHGEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEE 118 Q +E ++ V + G G L R ++++CT + L + Sbjct 458 ALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGR- 516 Query 119 HVELTVFSLIVVDECHH 135 L + +V+DE Sbjct 517 VTNLRRVTYVVLDEADR 533 >sp|Q9Y2R4|DDX52_HUMAN Probable ATP-dependent RNA helicase DDX52 OS=Homo sapiens OX=9606 GN=DDX52 PE=1 SV=4 Length=599 Score = 106 bits (264), Expect = 1e-22, Method: Composition-based stats. Identities = 33/167 (20%), Positives = 64/167 (38%), Gaps = 20/167 (12%) Query 332 DDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQ 391 + L G E KL + +++++ F +P ++F ++ + A L Sbjct 381 SAVETVEQELLFVGSETGKLLAVRELVKKGF----NPPVLVFVQSIERAKEL-------- 428 Query 392 GLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN 451 + G TQ+ + + F+ G + +L+ T++ G+D N Sbjct 429 ------FHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVN 482 Query 452 VVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELIN 496 +V+ Y T+ + + GR RA A TE + L R + N Sbjct 483 LVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFFTEDDKPLLRSVAN 529 Score = 52.5 bits (124), Expect = 9e-06, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 51/130 (39%), Gaps = 6/130 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA--KVVVLVNRVHLVTQHG 64 Q + I L G+ ++ PTG+GKT A + L+ + +++ L +Q Sbjct 192 QMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIH 251 Query 65 EEFRRMLDGRWTVTTL--SGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 E ++ +G + + + ++ D+L+ T L L ++L Sbjct 252 RELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPP--GIDL 309 Query 123 TVFSLIVVDE 132 +VVDE Sbjct 310 ASVEWLVVDE 319 >sp|Q0UCB9|DBP5_PHANO ATP-dependent RNA helicase DBP5 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) OX=321614 GN=DBP5 PE=3 SV=1 Length=471 Score = 105 bits (261), Expect = 1e-22, Method: Composition-based stats. Identities = 36/197 (18%), Positives = 70/197 (36%), Gaps = 25/197 (13%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K + L + + IIF RTR++A L + + G + Sbjct 286 KDQDKYSTLLKFYGLMTQASSIIFVRTRRTAEELERRMVAE--------------GHKVA 331 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT-------NE 462 S + +D+ VI +F+ G +L+ T+V G+D+ +V+ Y + T + Sbjct 332 QLSGALEGQDRDRVIDQFRSGEAKVLITTNVLARGIDVESVTMVINYDVPTMADGREADP 391 Query 463 ISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMD--QAEYQ 519 + + GR R + A + ++L + A + D + Q Sbjct 392 ETYLHRIGRTGRFGRVGVALTFV-HDKASWQQLHDIASYFKTDLHPIDTSDWDNVEEMIQ 450 Query 520 AKIRDLQQAALTKRAAQ 536 I+ + TK + Sbjct 451 KIIKSSRAGKSTKEMTE 467 Score = 42.5 bits (98), Expect = 0.014, Method: Composition-based stats. Identities = 20/116 (17%), Positives = 39/116 (34%), Gaps = 7/116 (6%) Query 19 NIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGEEFRRMLDGRWTV 77 N+I +G GKT A + ++ + + L L Q M G++ Sbjct 105 NMIAQSQSGTGKTAAFSLNILSRIDLSRNEPQAIALAPSRELARQILGVITHM--GQFME 162 Query 78 TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC 133 + P + +L+ T +Q L ++ ++V+DE Sbjct 163 GLKTMAAIPDPTKRNQRLDAHVLVGTPGTVQEQLKRRL----IKSDSIKILVLDEA 214 >sp|Q0E3X4|RH35A_ORYSJ DEAD-box ATP-dependent RNA helicase 35A OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0150100 PE=2 SV=2 Length=627 Score = 106 bits (264), Expect = 1e-22, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 65/165 (39%), Gaps = 20/165 (12%) Query 347 ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA 406 E+ ++ L + LQ+ P ++F + + +L LL G Sbjct 418 EDARIIYLLECLQK-----TPPPVLVFCENKADVDYIHEYL--------------LLKGV 458 Query 407 GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV 466 + Q +++ I+ F++G ++LVAT VA +GLD P V+ Y + + V Sbjct 459 EAVAIHGGKDQEERENAIEFFKNGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYV 518 Query 467 QARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAV 510 GR R ++ A ++ L + L +Q + V Sbjct 519 HRIGRTGRCGKTGIATTFINKNQTETTLLDLKHLLKEAKQRIPPV 563 Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats. Identities = 23/145 (16%), Positives = 47/145 (32%), Gaps = 20/145 (14%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAY-VAKRHLETVDGAKVV--------VLVNRV 57 Q + + L G+++I TG+GKT + L+ +V ++ Sbjct 209 QVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPLIMVALQEEMMMPIVPGEGPFGMIICPSR 268 Query 58 HLVTQHGEEFRRMLDGRWTVT-------TLSGDMGPRAGFGHLARCHDLLICTAELLQMA 110 L Q + + L G + RA + + +++ T L+ Sbjct 269 ELAKQTYDVIEQFLVPLKEAGYPEIRPLLCIGGVDMRAQLDVVKKGVHIVVATPGRLKDL 328 Query 111 LTSPEEEEHVELTVFSLIVVDECHH 135 L + + L + +DE Sbjct 329 LAKKK----MNLDNCRYLTLDEADR 349 >sp|Q9C8J1|RH34_ARATH DEAD-box ATP-dependent RNA helicase 34 OS=Arabidopsis thaliana OX=3702 GN=RH34 PE=2 SV=2 Length=392 Score = 104 bits (258), Expect = 1e-22, Method: Composition-based stats. Identities = 27/139 (19%), Positives = 51/139 (37%), Gaps = 15/139 (11%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K E L + + IIF TRQ L ++ + S Sbjct 244 KEEWKFDTLCDLYGRLTINQAIIFCNTRQKVDWLTEKMRSSNFIV--------------S 289 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 S Q+++ +++ +F+ +L+A+ V G+D+ + V+ Y + N + Sbjct 290 SMHGDKRQKERDDIMNQFRSFKSRVLIASDVWARGIDVQTVSHVINYDIPNNPELYIHRI 349 Query 470 GRARA-DQSVYAFVATEGS 487 GRA + A + S Sbjct 350 GRAGRFGREGVAINFVKSS 368 Score = 50.6 bits (119), Expect = 3e-05, Method: Composition-based stats. Identities = 24/128 (19%), Positives = 47/128 (37%), Gaps = 6/128 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT-RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q ++P L+G+++I +G GKT A V + + +V+VL L +Q + Sbjct 49 QQRALVPILKGRDVIAQAQSGTGKTSMIAISVCQIVNISSRKVQVLVLSPSRELASQTEK 108 Query 66 EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 + + G L R + T + + + ++ Sbjct 109 TIQAIGAHTNIQAHACIGGKSIGEDIKKLERGVHAVSGTPGRVYDMI----KRGSLQTKA 164 Query 125 FSLIVVDE 132 L+V+DE Sbjct 165 VKLLVLDE 172 >sp|Q6BPT8|DBP6_DEBHA ATP-dependent RNA helicase DBP6 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DBP6 PE=3 SV=2 Length=576 Score = 106 bits (263), Expect = 1e-22, Method: Composition-based stats. Identities = 56/296 (19%), Positives = 111/296 (38%), Gaps = 23/296 (8%) Query 248 ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQ 307 + + + Q ++ L ++R + + ++ T+ +L Sbjct 292 DEADRLLNQSFQNWCQILISKIDEFTNIKERNISNSWKLNVQKMIFSATLTTDAGKLSLL 351 Query 308 DFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNS 367 F+ + + E+ + +F G L+ L IL + S N Sbjct 352 KFHKPRLII---VNNKEQLVNEMFSLPATLNEFKLQFGSAKSSLKPL--ILSKFLLSKNK 406 Query 368 -PRGIIFTRTRQSAHSLLLWLQQQ-QGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQ 425 +IFT++ ++ L L L + I + N T + ++++ Sbjct 407 LANVLIFTKSNDASLRLSRLLSLIMNKLGSETINIAYINSTNN-------TTSVRSKILK 459 Query 426 KFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVAT 484 F T+N+LVAT + G+DI V+ Y L + V GR ARA+Q +A+ Sbjct 460 DFSKQTINILVATDLIARGIDILSITDVINYDLPNSSREYVHRVGRTARANQEGFAYNFC 519 Query 485 EGSRELK--RELINEA------LETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTK 532 G E K ++L+ + +E L ++ D++ Y+ + +LQQ + Sbjct 520 FGKGEAKWFKKLMAQVGRSEKNIEELELDTKQLIEDNDESMYKESLDELQQQVFNR 575 Score = 62.5 bits (150), Expect = 8e-09, Method: Composition-based stats. Identities = 25/120 (21%), Positives = 50/120 (42%), Gaps = 8/120 (7%) Query 20 IIIWLPTGAGKTRAAAYVAKRHLE--TVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRW-T 76 +++ TG+GKT A + L+ V + ++LV L+ Q ++ G + Sbjct 181 LLVNASTGSGKTLAYSIPIIESLQTVKVPRVRAIILVPTKPLINQVKTTLNQLSKGTNLS 240 Query 77 VTTLSGDMGPRAGFGHLARCH-DLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH 135 + +L D+ + L D+++ T L LT+ ++ L +V+DE Sbjct 241 IVSLKNDLSIKEEGIKLQTNEPDIIVSTPGRLVDHLTN----GYISLKNLQYLVIDEADR 296 >sp|Q9Y7T7|PRP28_SCHPO Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=prp28 PE=3 SV=1 Length=662 Score = 106 bits (264), Expect = 2e-22, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 67/147 (46%), Gaps = 18/147 (12%) Query 338 LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD 397 + ++ K +E+IL+ S+ SP IIF +++ ++ + L + Sbjct 490 EQRVEMISDDSKKWRRVEEILE---SNRFSPPIIIFVNLKRNIEAIA------KQLNAIG 540 Query 398 IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG 457 A L G+ +Q ++ I++ ++ T ++LVAT +A G+DIP+ ++V+ Y Sbjct 541 WHAVTLHGSK--------SQEQRERAIEQLRNKTADILVATDIAGRGIDIPNVSLVLNYN 592 Query 458 LLTNEISMVQARGR-ARADQSVYAFVA 483 + + GR RA +S A Sbjct 593 MAKSIEDYTHRIGRTGRAGKSGTAITF 619 Score = 50.6 bits (119), Expect = 4e-05, Method: Composition-based stats. Identities = 25/132 (19%), Positives = 45/132 (34%), Gaps = 16/132 (12%) Query 15 LEGKNIIIWLPTGAGKT--RAAAYVAKRHLETVD--------GAKVVVLVNRVHLVTQ-H 63 L+ K++I TG+GKT + + G VVL L Q Sbjct 284 LQRKDLIGIAETGSGKTAAFI-IPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQ 342 Query 64 GEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELT 123 E + + ++ G +++ +++ T L L E V L+ Sbjct 343 VEGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQGAHIVVATPGRLLDCL---ERRLFV-LS 398 Query 124 VFSLIVVDECHH 135 + +V+DE Sbjct 399 QCTYVVMDEADR 410 >sp|Q0CNX1|DBP8_ASPTN ATP-dependent RNA helicase dbp8 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=dbp8 PE=3 SV=1 Length=527 Score = 105 bits (262), Expect = 2e-22, Method: Composition-based stats. Identities = 65/387 (17%), Positives = 120/387 (31%), Gaps = 34/387 (9%) Query 163 VLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYN--- 219 + + +P A ++ + ++ I + PQ SQ+P Sbjct 155 IFAVVLTPTRELALQIYEQFKAISA-PQSMKPVLITGGTDMRPQALALSQRPHVVIATPG 213 Query 220 LCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRV 279 Q D ++ L L+ + G V A + ++ + Sbjct 214 RLADHIQTSGEDTVRGLKRVRMVVLDEADRLLAPGPGSMLPDVETCLSALPPSSERQTLL 273 Query 280 YALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELA 339 + + AL A+ + + A A L Sbjct 274 FTATVTPEVRAL-------KSMPRASTKPPVFVTEIEAGGTTSAGADGAAPKSTLPPTLK 326 Query 340 HLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIR 399 P + L +L + IIF ++A + R Sbjct 327 QTYLKVPMTHREAFLHVLLST--DGNAGKPAIIFCNHTKTAD--------------LLER 370 Query 400 AQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL 459 + +S + + Q ++ + +F+ +LVAT VA GLDIP +VV Y + Sbjct 371 LLRRLAHRVTSLHSLLPQSERSSNLARFRASAARILVATDVASRGLDIPSVALVVNYDVP 430 Query 460 TNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEY 518 N V GR ARA + A G R+++ L A+E + + + + + Sbjct 431 RNPDDYVHRVGRTARAGRRGEAVTLV-GQRDVQLVL---AIEERVGRQMEEWSEEGVSVE 486 Query 519 QAKIRD--LQQAALTKRAAQAAQRENQ 543 +R L++ KR A E + Sbjct 487 GRVVRTGVLKEVGSAKREALIEIEEGR 513 Score = 59.4 bits (142), Expect = 6e-08, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 2/123 (2%) Query 15 LEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDG 73 L+G++ I TG+GKT A A + ++ E G VVL L Q E+F+ + Sbjct 121 LKGRDCIGGSRTGSGKTIAFAVPILQKWAEDPFGIFAVVLTPTRELALQIYEQFKAISAP 180 Query 74 RWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDE 132 + ++G R L++ ++I T L + + E+ L ++V+DE Sbjct 181 QSMKPVLITGGTDMRPQALALSQRPHVVIATPGRLADHIQTSGEDTVRGLKRVRMVVLDE 240 Query 133 CHH 135 Sbjct 241 ADR 243 >sp|Q99PT0|DDX52_RAT Probable ATP-dependent RNA helicase DDX52 OS=Rattus norvegicus OX=10116 GN=Ddx52 PE=2 SV=1 Length=598 Score = 105 bits (262), Expect = 2e-22, Method: Composition-based stats. Identities = 33/167 (20%), Positives = 64/167 (38%), Gaps = 20/167 (12%) Query 332 DDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQ 391 + L G E KL + +++++ F +P ++F ++ + A L Sbjct 382 SAVETVEQELLFVGSETGKLLAMRELVKKGF----NPPVLVFVQSIERAKEL-------- 429 Query 392 GLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN 451 + G TQ+ + + F+ G + +L+ T++ G+D N Sbjct 430 ------FHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVN 483 Query 452 VVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELIN 496 +V+ Y T+ + + GR RA A TE + L R + N Sbjct 484 LVINYDFPTSSVEYIHRIGRTGRAGNRGKAVTFFTEDDKPLLRSVAN 530 Score = 56.0 bits (133), Expect = 1e-06, Method: Composition-based stats. Identities = 42/212 (20%), Positives = 74/212 (35%), Gaps = 19/212 (9%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA--KVVVLVNRVHLVTQHG 64 Q + I L G+ ++ PTG+GKT A + L+ + +V+ L +Q Sbjct 193 QMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPTNKGFRALVISPTRELASQIH 252 Query 65 EEFRRMLDGRWTVTTL--SGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 E ++ +G + + + ++ D+L+ T L L +E ++L Sbjct 253 RELIKISEGTGFRIHMIHKAAIAAKKFGPKSSKKFDILVTTPNRLIYLL--KQEPPGIDL 310 Query 123 TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAI 182 T +VVDE + + K L + SP A Sbjct 311 TSVEWLVVDES------------DKLFEDGKTGFRDQLASIFLACTSPKVRRAMFSATFA 358 Query 183 NHVLQLCA-NLDTWCIMSPQNCCPQLQEHSQQ 213 V Q C NLD +S ++ Q+ Sbjct 359 YDVEQWCKLNLDNIVSVSIGARNSAVETVEQE 390 >sp|Q75BS4|DHH1_EREGS ATP-dependent RNA helicase DHH1 OS=Eremothecium gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=DHH1 PE=3 SV=1 Length=484 Score = 104 bits (259), Expect = 2e-22, Method: Composition-based stats. Identities = 51/327 (16%), Positives = 108/327 (33%), Gaps = 25/327 (8%) Query 230 GDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND 289 G L+ + ++++ + + + + ++V LSE + + ++ + + + Sbjct 134 GTNLRDDIMRLNEPVHVLVGTPGRVLDLASRKVADLSECSLFVMDEADKMLSRDFKSLVE 193 Query 290 ALLIH-DTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPEN 348 +L +A +E + K L + + + + E Sbjct 194 QILSFLPQNHQSLLFSATFPLTVKEFMVK--HLNKPYEINLMDELTLKGITQYYAFVEER 251 Query 349 PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN 408 KL L FS + IIF + L + +G Sbjct 252 QKL----HCLNTLFSKLQINQAIIFCNSTNRVELLAKKITD--------------LGYSC 293 Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 M Q+++ +V +F+ G + LV + + G+DI NVV+ + + + Sbjct 294 YYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHR 353 Query 469 RGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQ 527 GR R A + R + + + L + A ++D++ Y A+ Sbjct 354 IGRSGRFGHLGLAINLINWN---DRFNLYKIEQELGTEIAAIPAQIDKSLYVAEDTSAVP 410 Query 528 AALTKRAAQAAQRENQRQQFPVEHVQL 554 Q R Q+ P + QL Sbjct 411 VPFPLDTMQGNARAAQQMPHPQQQAQL 437 Score = 52.1 bits (123), Expect = 1e-05, Method: Composition-based stats. Identities = 27/129 (21%), Positives = 48/129 (37%), Gaps = 6/129 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLE-TVDGAKVVVLVNRVHLVTQHGE 65 Q E I AL ++I+ G GKT A ++ V+ + +++V L Q + Sbjct 56 QEEAIPIALARRDILARAKNGTGKTAAFVIPTLEIVKPKVNKIQALIMVPTRELALQTSQ 115 Query 66 EFRRMLDGRWTVTTL-SGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 R + + +G R L +L+ T + + +L+ Sbjct 116 VVRTLGKHCGISCMVTTGGTNLRDDIMRLNEPVHVLVGTPGRVLD----LASRKVADLSE 171 Query 125 FSLIVVDEC 133 SL V+DE Sbjct 172 CSLFVMDEA 180 >sp|Q4P7Z8|DBP5_USTMA ATP-dependent RNA helicase DBP5 OS=Ustilago maydis (strain 521 / FGSC 9021) OX=237631 GN=DBP5 PE=3 SV=1 Length=456 Score = 104 bits (258), Expect = 2e-22, Method: Composition-based stats. Identities = 30/179 (17%), Positives = 65/179 (36%), Gaps = 24/179 (13%) Query 353 MLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQS 412 ++L ++ + IIF R++A + + Q+ G S Sbjct 288 HKYEVLVELYNLLTIGQSIIFCAKRETADRIAQKMTQE--------------GHKVDSLH 333 Query 413 THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL------TNEISMV 466 + D+ I F+DG +L++T+V G+DI +V+ Y + + + + Sbjct 334 GRLETADRDRTIDAFRDGKSKVLISTNVIARGIDIQQVTLVINYDMPLTQTGEADAETYL 393 Query 467 QARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD 524 GR R + + + + +E ++ + V D E + I++ Sbjct 394 HRIGRTGRFGRKGVSINFVHDQQSWS---YMDQIEKALKCQITRVATNDLEEMEYTIKE 449 >sp|A6SBT4|DBP5_BOTFB ATP-dependent RNA helicase dbp5 OS=Botryotinia fuckeliana (strain B05.10) OX=332648 GN=dbp5 PE=3 SV=2 Length=470 Score = 104 bits (259), Expect = 2e-22, Method: Composition-based stats. Identities = 43/301 (14%), Positives = 107/301 (36%), Gaps = 46/301 (15%) Query 246 MPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRY--NDALLIHDTVRAVDAL 303 + +L ++ + +++ L EA + Q + ++ + +L+ + Sbjct 198 VMDLIKRRSIDASQMKILCLDEADNMLDQQGLGDQCMRVKSMIRVEQILLFSATFPDEVY 257 Query 304 AALQDFYHREHVTKTQILCAERRLL-ALFDDRKNELAHLATHGPENPKLEMLEKILQRQF 362 QDF R + K + + +F D NE+ +IL + + Sbjct 258 GFAQDFSPRANEIKLKRDELTVSGIKQMFMDCPNEVGK--------------YEILVKLY 303 Query 363 SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE 422 IIF + R +A ++ L ++ G ++ ++ + Sbjct 304 GLMTIGSSIIFVKRRDTASNIAERLTKE--------------GHKVAAVHGAFEGSERDQ 349 Query 423 VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL--------TNEISMVQARGR-AR 473 V++ F+ G +L+ T+V G+D+ ++V+ Y + + + + GR R Sbjct 350 VLEDFRQGKAKVLITTNVLARGIDVQSVSMVINYDVPMKGRSDSEPDPETYLHRIGRTGR 409 Query 474 ADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKR 533 + + + +AL + + K++Q ++ +++ + R Sbjct 410 FGRVGVSISFVFDRKS------YDALNQIANHYNIDLIKLNQDDWDETEEIVKKVIKSSR 463 Query 534 A 534 A Sbjct 464 A 464 >sp|Q2UQI6|DRS1_ASPOR ATP-dependent RNA helicase drs1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=drs1 PE=3 SV=2 Length=820 Score = 106 bits (263), Expect = 2e-22, Method: Composition-based stats. Identities = 41/201 (20%), Positives = 83/201 (41%), Gaps = 20/201 (10%) Query 343 THGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL 402 G E+ +L L + + ++ R I+F R ++ AH + + Sbjct 527 RPGREDKRLGYLLHLCKEVYTG----RVIVFFRQKKEAHRVRIAFG-------------- 568 Query 403 LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE 462 L+G + M+Q + ++ F++G ++ L+AT +A GLDI V+ Y + Sbjct 569 LLGLKAAELHGSMSQEQRIRSVENFREGKVSFLLATDLAARGLDIKGVETVINYEAPQSH 628 Query 463 ISMVQARGR-ARADQSVYA-FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA 520 + GR ARA +S A +A E R++ + + + + A V + Sbjct 629 EIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAAVKASKAQGAKVASRVVDPAVADRWAQ 688 Query 521 KIRDLQQAALTKRAAQAAQRE 541 K +DL++ + +++ Sbjct 689 KAKDLEEEINAVLEEEKIEKQ 709 Score = 51.7 bits (122), Expect = 2e-05, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 48/136 (35%), Gaps = 12/136 (9%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHL----ETVDGAKVVVLVNRVHLVTQ 62 Q + I AL GK+I+ TG+GKT A L V ++V +L+ L Q Sbjct 329 QRKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLLFRPRKVPTSRVAILMPTRELAVQ 388 Query 63 HGEE---FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 D + L G R L + D++I T + + Sbjct 389 CYNVATKLATYTDITF--CQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNS---AS 443 Query 120 VELTVFSLIVVDECHH 135 + ++V+DE Sbjct 444 FTVDTLEILVLDEADR 459 >sp|P0CQ72|FAL1_CRYNJ ATP-dependent RNA helicase FAL1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=FAL1 PE=3 SV=1 Length=396 Score = 103 bits (256), Expect = 2e-22, Method: Composition-based stats. Identities = 28/149 (19%), Positives = 58/149 (39%), Gaps = 16/149 (11%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K + L + + + +IF TR+ L +++ S Sbjct 245 KEDWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTEKMREAN--------------FTVS 290 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 S M Q+++ ++ +F+ G +L+ T V G+D+ ++V+ Y L T+ + + Sbjct 291 SMHGEMVQKERDAIMAEFRGGQSRVLITTDVWARGIDVQQVSLVINYDLPTSRENYLHRI 350 Query 470 GR-ARADQSVYAF-VATEGSRELKRELIN 496 GR R + A T + R++ Sbjct 351 GRSGRFGRKGVAINFVTVDDVRILRDIEQ 379 Score = 43.6 bits (101), Expect = 0.005, Method: Composition-based stats. Identities = 19/128 (15%), Positives = 42/128 (33%), Gaps = 6/128 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q I+P + G+++I +G GKT + + + + + +VL L Q Sbjct 50 QQRAIIPIIRGRDVIAQAQSGTGKTATFSISMLQSIDTNLRETQALVLSPTRELAVQIQT 109 Query 66 EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 + D G L ++ T + + ++ Sbjct 110 VVLALGDYMNVSCHACIGGTSVGEDIRKLEAGQQVVSGTPGRVFDMI----RRRNLRTKD 165 Query 125 FSLIVVDE 132 ++++DE Sbjct 166 IKMLILDE 173 >sp|P0CQ73|FAL1_CRYNB ATP-dependent RNA helicase FAL1 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=FAL1 PE=3 SV=1 Length=396 Score = 103 bits (256), Expect = 2e-22, Method: Composition-based stats. Identities = 28/149 (19%), Positives = 58/149 (39%), Gaps = 16/149 (11%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K + L + + + +IF TR+ L +++ S Sbjct 245 KEDWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTEKMREAN--------------FTVS 290 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 S M Q+++ ++ +F+ G +L+ T V G+D+ ++V+ Y L T+ + + Sbjct 291 SMHGEMVQKERDAIMAEFRGGQSRVLITTDVWARGIDVQQVSLVINYDLPTSRENYLHRI 350 Query 470 GR-ARADQSVYAF-VATEGSRELKRELIN 496 GR R + A T + R++ Sbjct 351 GRSGRFGRKGVAINFVTVDDVRILRDIEQ 379 Score = 43.6 bits (101), Expect = 0.005, Method: Composition-based stats. Identities = 19/128 (15%), Positives = 42/128 (33%), Gaps = 6/128 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q I+P + G+++I +G GKT + + + + + +VL L Q Sbjct 50 QQRAIIPIIRGRDVIAQAQSGTGKTATFSISMLQSIDTNLRETQALVLSPTRELAVQIQT 109 Query 66 EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 + D G L ++ T + + ++ Sbjct 110 VVLALGDYMNVSCHACIGGTSVGEDIRKLEAGQQVVSGTPGRVFDMI----RRRNLRTKD 165 Query 125 FSLIVVDE 132 ++++DE Sbjct 166 IKMLILDE 173 >sp|Q41382|RH7_SPIOL DEAD-box ATP-dependent RNA helicase 7 OS=Spinacia oleracea OX=3562 GN=RH7 PE=2 SV=1 Length=685 Score = 105 bits (262), Expect = 3e-22, Method: Composition-based stats. Identities = 47/212 (22%), Positives = 79/212 (37%), Gaps = 30/212 (14%) Query 365 SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI 424 + R IIFT T++SA L L G + Q ++ + Sbjct 359 GSGGRSIIFTETKESASQLAGLLT------------------GARPLHGDIQQTQREVTL 400 Query 425 QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVA 483 + F+ G LVAT+VA GLDI ++++ + + GR RA + A + Sbjct 401 KGFRTGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEDYIHRSGRTGRAGNTGVAVML 460 Query 484 TEGSRELKRELINEA---LETLMEQAVAAVQKMDQAEYQAKIRDLQQAALT--KRAAQAA 538 + R ++ E+ E L V K E A I + + + K AA+ Sbjct 461 YDPKRSSVTKIERESGVKFEHLSAPQPVDVAKAVGIEAAAAILQISDSVIPAFKDAAEEL 520 Query 539 QRENQRQQFPVEHVQLLCINCMVAVGHGSDLR 570 + + V +L A G+ SD++ Sbjct 521 LSTSG-----LSAVDILSKALAKAAGY-SDIK 546 Score = 41.7 bits (96), Expect = 0.027, Method: Composition-based stats. Identities = 31/139 (22%), Positives = 50/139 (36%), Gaps = 22/139 (16%) Query 13 PALEGKNIIIWLP------TGAGKTRAAAYVAKRHL---ETVDGAK--------VVVLVN 55 A+ N+I TG GKT A L T D + V+VL+ Sbjct 134 QAMTFDNVIDGCDLVGRARTGQGKTLAFVLPIVESLVNGRTKDLRRSGHGRLPSVLVLLP 193 Query 56 RVHLVTQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP 114 L TQ +F+ T ++ G + L R D+++ T ++ L Sbjct 194 TRELATQVLADFQVYGGAVGLTACSVYGGAPFHSQISSLTRGVDIVVGTPGRVKDLL--- 250 Query 115 EEEEHVELTVFSLIVVDEC 133 E+ ++L V+DE Sbjct 251 -EKGVLKLGSLLFRVLDEA 268 >sp|Q93ZG7|RH38_ARATH DEAD-box ATP-dependent RNA helicase 38 OS=Arabidopsis thaliana OX=3702 GN=RH38 PE=1 SV=2 Length=496 Score = 104 bits (259), Expect = 3e-22, Method: Composition-based stats. Identities = 38/185 (21%), Positives = 80/185 (43%), Gaps = 24/185 (13%) Query 349 PKLEMLEKILQRQF-SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG 407 PK + ++++ Q + + IIF +T+ SA + L + +G Sbjct 321 PKEQNKIEVIKDQIMELGDIGQTIIFVKTKASAQKVHKALAE--------------MGYD 366 Query 408 NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT------- 460 +S ++T+ D+ +++++F++ +L+AT V G D N+VV Y L T Sbjct 367 VTSVHGNLTESDRDKIVKEFKECLTQVLIATDVIARGFDQQRVNLVVNYNLPTKYETGEP 426 Query 461 NEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMD-QAEYQ 519 + + GRA A +E++ E +E E V ++ + + EY+ Sbjct 427 DYEVYLHRVGRAGRFGRKGAVFNLLLDDGWDKEVM-EKIEKYFEANVKEIKSWNSEEEYK 485 Query 520 AKIRD 524 + +++ Sbjct 486 SALKE 490 Score = 49.8 bits (117), Expect = 7e-05, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 56/161 (35%), Gaps = 19/161 (12%) Query 18 KNIIIWLPTGAGKTRAAAYVAKRHLE-TVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWT 76 K++I G+GKT ++ T+ + + + L Q+ E ++M Sbjct 132 KHLIAQAHNGSGKTTCFVLGMLSRVDPTLREPQALCICPTRELANQNMEVLQKMGKFTGI 191 Query 77 VTTL----SGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDE 132 L S P A G H ++I T L+ + + L ++V DE Sbjct 192 TAELAVPDSTRGAPAATRGAPVSAH-VVIGTPGTLKKWMAFKR----LGLNHLKILVFDE 246 Query 133 CHHTHKDTVYN----VIMSQYLELKLQRAQPLPQVLGLTAS 169 H + IM + R P QVL +A+ Sbjct 247 ADHMLATDGFRDDSLKIMKD-----IGRVNPNFQVLLFSAT 282 >sp|A6RUH2|DRS1_BOTFB ATP-dependent RNA helicase drs1 OS=Botryotinia fuckeliana (strain B05.10) OX=332648 GN=drs1 PE=3 SV=1 Length=801 Score = 105 bits (262), Expect = 3e-22, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 75/185 (41%), Gaps = 20/185 (11%) Query 343 THGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL 402 G E ++ L + ++ R I+F R ++ AH + Sbjct 493 RPGREGKRMGYLLYLCANVYTD----RVIVFFRQKKEAHRARIIFG-------------- 534 Query 403 LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE 462 L G + M+Q + + ++ F+DG + L+AT +A GLDI + V+ Y + Sbjct 535 LSGLKATELHGSMSQEQRIKSVEAFRDGKASFLLATDLASRGLDIKGVDTVINYEAPQSH 594 Query 463 ISMVQARGR-ARADQSVYA-FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA 520 + GR ARA +S A +A E R++ + + + + ++ + + Sbjct 595 DIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAAVKASRTQGAKVVSRVIEASEADSWSE 654 Query 521 KIRDL 525 K+ ++ Sbjct 655 KVDEM 659 Score = 51.0 bits (120), Expect = 4e-05, Method: Composition-based stats. Identities = 27/136 (20%), Positives = 50/136 (37%), Gaps = 12/136 (9%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHL----ETVDGAKVVVLVNRVHLVTQ 62 Q + I AL GK+++ TG+GKT A L + V ++V +L+ L Q Sbjct 295 QSKTIPVALLGKDVVGGAVTGSGKTAAFVVPVLERLLYRPKKVPTSRVAILMPTRELAIQ 354 Query 63 HGEE---FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 D ++ + G + + L D++I T + + Sbjct 355 CHAVATKLASHTDIKFCLAV--GGLSLKVQEAELRLRPDVIIATPGRFIDHMRNSPS--- 409 Query 120 VELTVFSLIVVDECHH 135 + ++V+DE Sbjct 410 FTVDTLEILVLDEADR 425 >sp|Q86TM3|DDX53_HUMAN Probable ATP-dependent RNA helicase DDX53 OS=Homo sapiens OX=9606 GN=DDX53 PE=1 SV=3 Length=631 Score = 105 bits (261), Expect = 3e-22, Method: Composition-based stats. Identities = 38/197 (19%), Positives = 73/197 (37%), Gaps = 25/197 (13%) Query 352 EMLEKILQRQF--SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 E ++ L ++F + S + + I+F + A L I A+ L G Sbjct 450 EKEKRALTQEFVENMSPNDKVIMFVSQKHIADDLSS------DFNIQGISAESLHGNS-- 501 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA- 468 Q DQ+ ++ F+ G + +L+ T + GLD+ V Y N V Sbjct 502 ------EQSDQERAVEDFKSGNIKILITTDIVSRGLDLNDVTHVYNYDFPRNIDVYVHRV 555 Query 469 --RGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQ 526 GR + + S+ + ELI ++++A +V + + + Q Sbjct 556 GYIGRTGKTGTSVTLITQRDSK-MAGELI-----KILDRANQSVPEDLVVMAEQYKLNQQ 609 Query 527 QAALTKRAAQAAQRENQ 543 + R+ + QR + Sbjct 610 KRHRETRSRKPGQRRKE 626 Score = 58.3 bits (139), Expect = 2e-07, Method: Composition-based stats. Identities = 54/350 (15%), Positives = 115/350 (33%), Gaps = 26/350 (7%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK-------VVVLVNRVHLVTQHGEEF 67 L+G ++I+ TG GKT + HL++ ++ ++VL L E Sbjct 257 LQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAEC 316 Query 68 RRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSL 127 + + G +++ D++I T L + V L + Sbjct 317 SKYSYKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLND----LQMNNSVNLRSITY 372 Query 128 IVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLT-AS-PGTGGASKLDGAINHV 185 +V+DE I L+++ R +T A+ P T L + + Sbjct 373 LVIDEADKMLDMEFEPQIRKILLDVRPDRQTV------MTSATWPDTVRQLALSYLKDPM 426 Query 186 LQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKK--LMDQIHDH 243 + NL+ + + + E ++ Q + + D + + + D + Sbjct 427 IVYVGNLNLVAVNTVKQNIIVTTEKEKRALTQEFVENMSPNDKVIMFVSQKHIADDLSSD 486 Query 244 LEMPELSRKFGTQMYEQ----QVVKLSEAAALAGLQEQRVYALHL-RRYNDALLIHDTVR 298 + +S + EQ + V+ ++ + L + + L + +D R Sbjct 487 FNIQGISAESLHGNSEQSDQERAVEDFKSGNIKILITTDIVSRGLDLNDVTHVYNYDFPR 546 Query 299 AVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPEN 348 +D + R T T + +R + + L PE+ Sbjct 547 NIDVYVHRVGYIGRTGKTGTSVTLITQRDSKMAGELIKILDRANQSVPED 596 >sp|A5D7C1|DDX52_BOVIN Probable ATP-dependent RNA helicase DDX52 OS=Bos taurus OX=9913 GN=DDX52 PE=2 SV=1 Length=596 Score = 105 bits (261), Expect = 3e-22, Method: Composition-based stats. Identities = 33/167 (20%), Positives = 64/167 (38%), Gaps = 20/167 (12%) Query 332 DDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQ 391 + L G E KL + +++++ F +P ++F ++ + A L Sbjct 379 SAVETVEQELLFVGSETGKLLAMRELVKKGF----NPPVLVFVQSIERAKEL-------- 426 Query 392 GLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN 451 + G TQ+ + + F+ G + +L+ T++ G+D N Sbjct 427 ------FHELIYEGINVDVIHADRTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVN 480 Query 452 VVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELIN 496 +V+ Y T+ + + GR RA A TE + L R + N Sbjct 481 LVINYDFPTSSVEYIHRIGRTGRAGHKGKAVTFFTEDDKPLLRSVAN 527 Score = 55.6 bits (132), Expect = 1e-06, Method: Composition-based stats. Identities = 28/130 (22%), Positives = 53/130 (41%), Gaps = 6/130 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA--KVVVLVNRVHLVTQHG 64 Q + I L G+ ++ PTG+GKT A + HL+ + +++ L +Q Sbjct 190 QMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMHLKQPTNKGFRALIISPTRELASQIH 249 Query 65 EEFRRMLDGRWTVTTL--SGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 E ++ +G + + + ++ D+L+ T L L ++L Sbjct 250 RELVKLSEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPP--GIDL 307 Query 123 TVFSLIVVDE 132 T +VVDE Sbjct 308 TSVEWLVVDE 317 >sp|Q8K301|DDX52_MOUSE Probable ATP-dependent RNA helicase DDX52 OS=Mus musculus OX=10090 GN=Ddx52 PE=2 SV=2 Length=598 Score = 105 bits (261), Expect = 3e-22, Method: Composition-based stats. Identities = 33/167 (20%), Positives = 63/167 (38%), Gaps = 20/167 (12%) Query 332 DDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQ 391 + L G E KL + +++++ F P ++F ++ + A L Sbjct 382 SAVETVEQELLFVGSETGKLLAMRELVKKGFK----PPVLVFVQSIERAKEL-------- 429 Query 392 GLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN 451 + G TQ+ + + F+ G + +L+ T++ G+D N Sbjct 430 ------FHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVN 483 Query 452 VVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELIN 496 +V+ Y T+ + + GR RA A TE + L R + N Sbjct 484 LVINYDFPTSSVEYIHRIGRTGRAGNRGKAVTFFTEDDKPLLRSVAN 530 Score = 55.6 bits (132), Expect = 1e-06, Method: Composition-based stats. Identities = 41/212 (19%), Positives = 73/212 (34%), Gaps = 19/212 (9%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA--KVVVLVNRVHLVTQHG 64 Q + I L G+ ++ PTG+GKT A + L+ + +V+ L +Q Sbjct 193 QMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPTNKGFRALVISPTRELASQIH 252 Query 65 EEFRRMLDGRWTVTTL--SGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 E ++ +G + + + ++ D+L+ T L L ++L Sbjct 253 RELIKISEGTGFRIHMIHKAAIAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPP--GIDL 310 Query 123 TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAI 182 T +VVDE + + K + L + SP A Sbjct 311 TNVEWLVVDES------------DKLFEDGKTGFREQLASIFLACTSPKVRRAMFSATFA 358 Query 183 NHVLQLCA-NLDTWCIMSPQNCCPQLQEHSQQ 213 V Q C NLD +S ++ Q+ Sbjct 359 YDVEQWCKLNLDNVVSVSIGARNSAVETVEQE 390 >sp|A7F4L5|DRS1_SCLS1 ATP-dependent RNA helicase drs1 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 GN=drs1 PE=3 SV=1 Length=801 Score = 105 bits (262), Expect = 3e-22, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 75/185 (41%), Gaps = 20/185 (11%) Query 343 THGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL 402 G E ++ L + ++ R I+F R ++ AH + Sbjct 493 RPGREGKRMGYLLYLCANVYTD----RVIVFFRQKKEAHRARIIFG-------------- 534 Query 403 LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE 462 L G + M+Q + + ++ F+DG + L+AT +A GLDI + V+ Y + Sbjct 535 LSGLKATELHGSMSQEQRIKSVEAFRDGKASFLLATDLASRGLDIKGVDTVINYEAPQSH 594 Query 463 ISMVQARGR-ARADQSVYA-FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA 520 + GR ARA +S A +A E R++ + + + + ++ + + Sbjct 595 DIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAAVKASRTQGAKVVSRVIEASEADSWSE 654 Query 521 KIRDL 525 K+ ++ Sbjct 655 KVDEM 659 Score = 51.3 bits (121), Expect = 2e-05, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 52/137 (38%), Gaps = 14/137 (10%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT--RAAAYVAKRHL---ETVDGAKVVVLVNRVHLVT 61 Q + I AL GK+++ TG+GKT V +R L + V ++V +L+ L Sbjct 295 QSKTIPVALLGKDVVGGAVTGSGKTAAFI-VPVLERLLYRPKKVPTSRVAILMPTRELAI 353 Query 62 QHGEE---FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEE 118 Q D ++ + G + + L D++I T + + Sbjct 354 QCHAVATKLASHTDIKFCLAV--GGLSLKVQEAELRLRPDVIIATPGRFIDHMRNSPS-- 409 Query 119 HVELTVFSLIVVDECHH 135 + ++V+DE Sbjct 410 -FTVDTLEILVLDEADR 425 >sp|A3GFV3|FAL1_PICST ATP-dependent RNA helicase FAL1 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) OX=322104 GN=FAL1 PE=3 SV=1 Length=399 Score = 102 bits (254), Expect = 4e-22, Method: Composition-based stats. Identities = 28/157 (18%), Positives = 60/157 (38%), Gaps = 16/157 (10%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K + L + + + +IF T+ + L +++Q Sbjct 248 KEDWKFDTLCDLYDNLTITQAVIFCNTKLKVNWLTDQMRKQNFTVV-------------- 293 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 S M Q ++ ++ F+ G +L++T V G+D+ ++V+ Y L T++ + + Sbjct 294 SMHGDMKQDERDSIMNDFRTGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENYIHRI 353 Query 470 GR-ARADQSVYAF-VATEGSRELKRELINEALETLME 504 GR R + A + T+ R+ + E Sbjct 354 GRSGRFGRKGVAINLITKEDVATLRDFEKYYSTKIRE 390 Score = 44.4 bits (103), Expect = 0.003, Method: Composition-based stats. Identities = 19/129 (15%), Positives = 43/129 (33%), Gaps = 6/129 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q IM + G++ I +G GKT + + + + ++L L Q Sbjct 53 QSRAIMQIINGRDTIAQAQSGTGKTATFSIGMLQAIDTNAKDCQALILSPTRELAVQIQN 112 Query 66 EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 + + D T G L + ++ T + + + + + Sbjct 113 VVKHLGDYMNIHTHACIGGTHVGDDIKKLKQGQQIVSGTPGRVVDMV----KRQQLSTRN 168 Query 125 FSLIVVDEC 133 ++++DE Sbjct 169 IKMLILDEA 177 >sp|Q5ADL0|PRP5_CANAL Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=PRP5 PE=3 SV=1 Length=884 Score = 105 bits (261), Expect = 4e-22, Method: Composition-based stats. Identities = 72/430 (17%), Positives = 148/430 (34%), Gaps = 55/430 (13%) Query 145 IMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCC 204 ++ + + + P +GL SP A +++ I + + NL C + Sbjct 352 MLRHIQDQQFSKDNQGP--IGLILSPTRELALQIEKEILNFTKRNNNLRVCCCYGGSSIE 409 Query 205 PQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVK 264 Q+ ++ + R D ++++ + + + + +E QV K Sbjct 410 NQI-NELKKGVEIIVGTPGRVIDLLAANSGRVLNLKRCTFVVLDEADRMFDLGFEPQVNK 468 Query 265 LSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAE 324 + L ++ R L + + D + + V +I Sbjct 469 I-----LTQIRPDRQTVLFSATFPRKMETLAKQILTDPVVII---VGGISVVAPEI---- 516 Query 325 RRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLL 384 ++ + LF+ E + ++E L IL + ++FT + A L+ Sbjct 517 KQEVVLFETSAEEQDK-----YKQQRVEKLHDILTNYQIEHPDSKILVFTEKQNDADELV 571 Query 385 LWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ--DGTLNLLVATSVAE 442 L + + Q D++ I++F D +N+L+ATS+A Sbjct 572 ANLLSNKYPAI--------------AIHGGKDQMDRKYAIKEFASMDSGINILIATSIAA 617 Query 443 EGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSR-----------EL 490 GLD+ + +V+ + + V GR RA A S+ +L Sbjct 618 RGLDVRNLGLVINFDPPNHMEDYVHRVGRTGRAGAKGNAITFVSSSQPKEVFNLVKALKL 677 Query 491 KRELINEALETLMEQAVAAV----QKMDQAEYQAKIRDLQQAALTKRAAQAAQ---RENQ 543 I+ LE + + V V +K+ + +LQ+ K + + ++ Q Sbjct 678 SHSDIDPKLEEIANKFVTKVKAGKEKISSGFGGKGLDNLQEVRDNKLKLEKQRFGDQQPQ 737 Query 544 RQQFPVEHVQ 553 RQQ E + Sbjct 738 RQQEETETKK 747 Score = 50.6 bits (119), Expect = 5e-05, Method: Composition-based stats. Identities = 24/137 (18%), Positives = 49/137 (36%), Gaps = 9/137 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK------VVVLVNRVHLV 60 Q + + L G+++I TG+GKT + RH++ +K ++L L Sbjct 321 QSQALPTILSGRDVIGIAKTGSGKTLSYVLPMLRHIQDQQFSKDNQGPIGLILSPTRELA 380 Query 61 TQHGEEFRRMLDGRWTVTTLS--GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEE 118 Q +E + G L + ++++ T + L + Sbjct 381 LQIEKEILNFTKRNNNLRVCCCYGGSSIENQINELKKGVEIIVGTPGRVIDLLAANSGR- 439 Query 119 HVELTVFSLIVVDECHH 135 + L + +V+DE Sbjct 440 VLNLKRCTFVVLDEADR 456 >sp|P0CQ86|DBP5_CRYNJ ATP-dependent RNA helicase DBP5 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=DBP5 PE=3 SV=2 Length=518 Score = 104 bits (258), Expect = 4e-22, Method: Composition-based stats. Identities = 35/203 (17%), Positives = 72/203 (35%), Gaps = 37/203 (18%) Query 345 GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI 404 E+ K E L + + I+F + + +A + L + Sbjct 342 DSEDQKYEAL----SALYDCLVIGQSIVFCKRKVTADHIAERLISE-------------- 383 Query 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT---- 460 G +S +++ ++ F++G +L+ T+V G+DIP N+VV Y + Sbjct 384 GHAVASLHGDKLSQERDAILDGFRNGETKVLITTNVIARGIDIPAVNMVVNYDVPDLGPG 443 Query 461 ----NEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQ 515 + + + GR R + + + T R +E +M ++K+D Sbjct 444 GNGPDIETYIHRIGRTGRFGRKGCSVIFTHDYRS------KSDVERIMNTLGKPMKKID- 496 Query 516 AEYQAKIRDLQQAALTKRAAQAA 538 D++Q + A Sbjct 497 ---ARSTTDIEQLEKALKLAMKG 516 >sp|Q0JM17|RH56_ORYSJ DEAD-box ATP-dependent RNA helicase 56 OS=Oryza sativa subsp. japonica OX=39947 GN=AIP1 PE=1 SV=2 Length=432 Score = 103 bits (256), Expect = 4e-22, Method: Composition-based stats. Identities = 42/256 (16%), Positives = 89/256 (35%), Gaps = 43/256 (17%) Query 286 RYNDALLIHDTVRAVDALAALQD--------------FYHREHVTKTQILCAERRLLALF 331 + ++ + + +D+L +D ++K ++ + Sbjct 194 KNVRHFILDECDKMLDSLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPM 253 Query 332 DDRKNELAHLATHG--------PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSL 383 + ++ A L HG E K L +L + + +IF ++ A L Sbjct 254 EIYVDDEAKLTLHGLVQHYIKLSEAEKNRKLNDLLDAL----DFNQVVIFVKSVSRAAEL 309 Query 384 LLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEE 443 L + S + MTQ ++ + F++G +LVAT + Sbjct 310 NKLLCECNFPAI--------------SIHSGMTQEERLTRYKNFKEGHKRILVATDLVGR 355 Query 444 GLDIPHCNVVVRYGLLTNEISMVQARGRARA-DQSVYAFVATEGSRELKRELINEALETL 502 G+DI N+V+ Y + + S + GRA A + + +++N+ E Sbjct 356 GIDIERVNIVINYDMPDSADSYLHRVGRAGRFGTKGLAITFVSSASD--SDVLNQVQERF 413 Query 503 MEQAVAAVQKMDQAEY 518 +++D + Y Sbjct 414 EVDIKELPEQIDTSTY 429 Score = 44.0 bits (102), Expect = 0.004, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 49/131 (37%), Gaps = 8/131 (6%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE 65 Q E I A+ G ++I +G GKT + + ++ V G +VL + L Q Sbjct 78 QHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVAGQVGALVLCHTRELAYQICH 137 Query 66 EFRRMLD--GRWTVTTLSGDMGPRAGFGHLARCH-DLLICTAELLQMALTSPEEEEHVEL 122 EF R V G + + L +++ T + + E+ + L Sbjct 138 EFERFSKYLPEVKVAVFYGGVHIKKHKDLLKNDCPHIVVGTP----GRILALAREKDLSL 193 Query 123 TVFSLIVVDEC 133 ++DEC Sbjct 194 KNVRHFILDEC 204 >sp|P0CQ90|MAK5_CRYNJ ATP-dependent RNA helicase MAK5 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=MAK5 PE=3 SV=1 Length=772 Score = 105 bits (261), Expect = 4e-22, Method: Composition-based stats. Identities = 45/253 (18%), Positives = 90/253 (36%), Gaps = 36/253 (14%) Query 306 LQDFYHREHVTKTQILCAERRLLALFD--DRKNELAHLATHGPENPKLEMLEKILQRQFS 363 LQ R + L L + D ++E + PE + L + + Sbjct 410 LQKNLKRRSRSWKGKGKRSSTLEDLVEKLDFRDENPEVIDLSPEGGVVSSLRESMIESTK 469 Query 364 SSNSP-----------RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQS 412 R I+F + S +++ L T+ Sbjct 470 DDKDLYLYYFLLRYPGRSIVFVNSIDS-------IRRLLPLFTLLQLPVF-------PLH 515 Query 413 THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR- 471 +H+ Q+ + + + +F+ +L+AT VA GLDIP + VV + L + + GR Sbjct 516 SHLQQKQRLKNLDRFKSNPKGILIATDVAARGLDIPQVDHVVHFNLPRTADAYIHRSGRT 575 Query 472 ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAAL 530 ARA +A + + + ++R L+ +E+ +A + +R+ + + Sbjct 576 ARAQNEGFALQLVSPDEKSVQRALM-----KSLERTHELPDLPIEAGFLPSLRE--RLRV 628 Query 531 TKRAAQAAQRENQ 543 +A R + Sbjct 629 ATEIEKAQHRATK 641 Score = 58.3 bits (139), Expect = 2e-07, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 55/155 (35%), Gaps = 23/155 (15%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK--------VVVLVNRVH 58 Q I + G++++ TG+GKT A + +L +K +VL Sbjct 199 QSRAIPAGITGRDVVGVAETGSGKTLAYSLPILHYLLGQRKSKAGIKRPLSALVLCPTRE 258 Query 59 LVTQ---HGEEFRRM-----------LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTA 104 L Q H + R +V ++ G + + L R D+++ T Sbjct 259 LALQVMDHLNALLKHALATPDGEKPQGPPRVSVGSVVGGLSAQKQKRILERGCDVIVATP 318 Query 105 ELLQMALTSPEEEEHVELTVFSLIVVDECHHTHKD 139 L + + +E + +V+DE ++ Sbjct 319 GRLWDLIKADDELA-TSVRTLRFLVIDEADRMIEN 352 >sp|Q5Z6G5|RH35B_ORYSJ DEAD-box ATP-dependent RNA helicase 35B OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0697200 PE=3 SV=1 Length=619 Score = 104 bits (259), Expect = 5e-22, Method: Composition-based stats. Identities = 35/186 (19%), Positives = 68/186 (37%), Gaps = 17/186 (9%) Query 347 ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA 406 E K E L + P ++F + + +L LL G Sbjct 405 EYVKEEARIIYLLECLQKTPPP-VLVFCEHKADVDYIQEFL--------------LLKGV 449 Query 407 GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV 466 + ++++ + F+ ++LVAT VA +GLDIP V+ Y + + V Sbjct 450 EAVAIHGGKDDEERKDAFKSFKASEKDVLVATDVASKGLDIPDIQHVINYDMPAEIENYV 509 Query 467 QARGR-ARADQSVYAFVATEGSRELKREL-INEALETLMEQAVAAVQKMDQAEYQAKIRD 524 GR R ++ A ++ L + + L ++ + +D + K+ Sbjct 510 HRIGRTGRRGKTGVATTFINKNQTETTLLDLKQLLIESKQRLPPILADLDDPQEDDKVAI 569 Query 525 LQQAAL 530 QQ+ + Sbjct 570 AQQSGV 575 Score = 49.8 bits (117), Expect = 7e-05, Method: Composition-based stats. Identities = 24/145 (17%), Positives = 47/145 (32%), Gaps = 20/145 (14%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAY-VAKRHLETVDGAKVV--------VLVNRV 57 Q + + AL G+++I TG+GKT + L+ +V ++ Sbjct 200 QVQGLPVALSGRDMIGIAFTGSGKTLVFVLPLIMAALQEEILMPIVPGEGPFGLIVCPSR 259 Query 58 HLVTQHGEEFRRMLDGRWTVT-------TLSGDMGPRAGFGHLARCHDLLICTAELLQMA 110 L Q E L G + R + + +++ T L+ Sbjct 260 ELARQTHEVIEMFLAPLMEAGYPEIRPLLCIGGVDMRTQMEVVKKGVHIVVATPGRLKDL 319 Query 111 LTSPEEEEHVELTVFSLIVVDECHH 135 L+ + + L + +DE Sbjct 320 LSKKK----MNLDNCRYLTLDEADR 340 >sp|Q9GZR7|DDX24_HUMAN ATP-dependent RNA helicase DDX24 OS=Homo sapiens OX=9606 GN=DDX24 PE=1 SV=1 Length=859 Score = 105 bits (261), Expect = 5e-22, Method: Composition-based stats. Identities = 85/565 (15%), Positives = 172/565 (30%), Gaps = 93/565 (16%) Query 7 QWEVIMPALEGK-NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q + PA+ K +I+ TG+GKT A + +H V Q + Sbjct 219 QALTLAPAIRDKLDILGAAETGSGKTLA------------------FAIPMIHAVLQWQK 260 Query 66 EFRRMLDGRWTVTTLSGDM---------GPRAGFGHLARCHDLLICTAELLQMALTSPEE 116 R G+ P D + +E L + + Sbjct 261 --RNAAPPPSNTEAPPGETRTEAGAETRSPGKAEAESDALPDDTVIESEALPSDIAAEAR 318 Query 117 E--EHVELTVFSLIVVDECHHTHKDTVYNVIMSQYL------------------------ 150 L D+ + ++I + + Sbjct 319 AKTGGTVSDQALLFGDDDA----GEGPSSLIREKPVPKQNENEEENLDKEQTGNLKQELD 374 Query 151 -ELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQE 209 + +A P +LGL +P A ++ I+ V + + T ++ + Q + Sbjct 375 DKSATCKAYPKRPLLGLVLTPTRELAVQVKQHIDAVARF-TGIKTAILVGGMSTQKQQRM 433 Query 210 HSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAA 269 +++P + R + + L + + + + + + + ++ +L E Sbjct 434 LNRRP-EIVVATPGRLWELIKEKHYHLRNLRQLRCLVVDEADRMVEKGHFAELSQLLEML 492 Query 270 ALAGLQEQR---VYALHLRRYNDA---LLIHDTVRAVDALAALQDFYHREHVTKTQILCA 323 + +R V++ L + A +L + +D A L + + + Sbjct 493 NDSQYNPKRQTLVFSATLTLVHQAPARILHKKHTKKMDKTAKLDLLMQKIGMRGKPKVID 552 Query 324 ERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSL 383 R + L H + K L L + R ++F + L Sbjct 553 LTRN----EATVETLTETKIHCETDEKDFYLYYFLMQY-----PGRSLVFANSISCIKRL 603 Query 384 LLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEE 443 L+ + M Q+ + +++F +L+AT VA Sbjct 604 SGLLKVLDIMPLTLHAC--------------MHQKQRLRNLEQFARLEDCVLLATDVAAR 649 Query 444 GLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETL 502 GLDIP V+ Y + V GR ARA + + + + I + L+ Sbjct 650 GLDIPKVQHVIHYQVPRTSEIYVHRSGRTARATNEGLSLMLIGPEDVINFKKIYKTLKKD 709 Query 503 MEQAVAAVQKMDQAEYQAKIRDLQQ 527 + + VQ + +IR +Q Sbjct 710 EDIPLFPVQTKYMDVVKERIRLARQ 734 >sp|Q5JK84|RH15_ORYSJ DEAD-box ATP-dependent RNA helicase 15 OS=Oryza sativa subsp. japonica OX=39947 GN=AIP2 PE=1 SV=1 Length=432 Score = 102 bits (255), Expect = 5e-22, Method: Composition-based stats. Identities = 42/256 (16%), Positives = 89/256 (35%), Gaps = 43/256 (17%) Query 286 RYNDALLIHDTVRAVDALAALQD--------------FYHREHVTKTQILCAERRLLALF 331 + ++ + + +D+L +D ++K ++ + Sbjct 194 KNVRHFILDECDKMLDSLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPM 253 Query 332 DDRKNELAHLATHG--------PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSL 383 + ++ A L HG E K L +L + + +IF ++ A L Sbjct 254 EIYVDDEAKLTLHGLVQHYIKLSEAEKNRKLNDLLDAL----DFNQVVIFVKSVSRAAEL 309 Query 384 LLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEE 443 L + S + MTQ ++ + F++G +LVAT + Sbjct 310 NKLLCECNFPAI--------------SIHSGMTQEERLTRYKNFKEGHKRILVATDLVGR 355 Query 444 GLDIPHCNVVVRYGLLTNEISMVQARGRARA-DQSVYAFVATEGSRELKRELINEALETL 502 G+DI N+V+ Y + + S + GRA A + + +++N+ E Sbjct 356 GIDIERVNIVINYDMPDSADSYLHRVGRAGRFGTKGLAITFVSSASD--SDVLNQVQERF 413 Query 503 MEQAVAAVQKMDQAEY 518 +++D + Y Sbjct 414 EVDIKELPEQIDTSTY 429 Score = 44.0 bits (102), Expect = 0.004, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 49/131 (37%), Gaps = 8/131 (6%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE 65 Q E I A+ G ++I +G GKT + + ++ V G +VL + L Q Sbjct 78 QHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVAGQVGALVLCHTRELAYQICH 137 Query 66 EFRRMLD--GRWTVTTLSGDMGPRAGFGHLARCH-DLLICTAELLQMALTSPEEEEHVEL 122 EF R V G + + L +++ T + + E+ + L Sbjct 138 EFERFSKYLPEVKVAVFYGGVHIKKHKDLLKNDCPHIVVGTP----GRILALAREKDLSL 193 Query 123 TVFSLIVVDEC 133 ++DEC Sbjct 194 KNVRHFILDEC 204 >sp|P0CQ87|DBP5_CRYNB ATP-dependent RNA helicase DBP5 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=DBP5 PE=3 SV=1 Length=546 Score = 104 bits (258), Expect = 5e-22, Method: Composition-based stats. Identities = 35/203 (17%), Positives = 72/203 (35%), Gaps = 37/203 (18%) Query 345 GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI 404 E+ K E L + + I+F + + +A + L + Sbjct 370 DSEDQKYEAL----SALYDCLVIGQSIVFCKRKVTADHIAERLISE-------------- 411 Query 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT---- 460 G +S +++ ++ F++G +L+ T+V G+DIP N+VV Y + Sbjct 412 GHAVASLHGDKLSQERDAILDGFRNGETKVLITTNVIARGIDIPAVNMVVNYDVPDLGPG 471 Query 461 ----NEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQ 515 + + + GR R + + + T R +E +M ++K+D Sbjct 472 GNGPDIETYIHRIGRTGRFGRKGCSVIFTHDYRS------KSDVERIMNTLGKPMKKID- 524 Query 516 AEYQAKIRDLQQAALTKRAAQAA 538 D++Q + A Sbjct 525 ---ARSTTDIEQLEKALKLAMKG 544 >sp|A5DE68|FAL1_PICGU ATP-dependent RNA helicase FAL1 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=FAL1 PE=3 SV=2 Length=397 Score = 102 bits (254), Expect = 5e-22, Method: Composition-based stats. Identities = 28/165 (17%), Positives = 66/165 (40%), Gaps = 15/165 (9%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K + L + + + +IF T+ + L ++ + + G Sbjct 246 KEDWKFDTLCDLYDNLTITQAVIFCNTKAKVNWLA------GQMRKSNFTVAAMHG---- 295 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 M Q D+ ++++F+ G+ +L++T V G+D+ ++V+ Y L ++ + V Sbjct 296 ----DMKQEDRDSIMKEFRSGSTRVLISTDVWARGIDVQQVSLVINYDLPLDKENYVHRI 351 Query 470 GR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM 513 GR R + A + + + + T + + A + K+ Sbjct 352 GRSGRFGRKGTAINLLTSQDKDELKSLQHYYSTKIREVPADLSKI 396 Score = 46.7 bits (109), Expect = 4e-04, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 43/129 (33%), Gaps = 6/129 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE 65 Q IM + G++ I +G GKT + ++T + +VL L Q Sbjct 51 QSRAIMQIIRGRDTIAQAQSGTGKTATFSIGILSSIDTKSKDCQALVLSPTRELAQQIEN 110 Query 66 EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 + D + G L + ++ T + + + ++ Sbjct 111 VIEHLGDYMNVRSHACIGGTQVGEDVKKLQQGQHIISGTPGRVLDMI----KRRNIMPRH 166 Query 125 FSLIVVDEC 133 ++V+DE Sbjct 167 VKMLVLDEA 175 >sp|Q4WRV2|DRS1_ASPFU ATP-dependent RNA helicase drs1 OS=Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293) OX=330879 GN=drs1 PE=3 SV=1 Length=830 Score = 104 bits (260), Expect = 5e-22, Method: Composition-based stats. Identities = 47/214 (22%), Positives = 91/214 (43%), Gaps = 28/214 (13%) Query 343 THGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL 402 G E+ +L L + ++ R I+F R ++ AH + + Sbjct 535 RPGREDKRLGYLLYLCNEIYTG----RVIVFFRQKREAHRVRIVFG-------------- 576 Query 403 LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE 462 L+G + M+Q + + ++ F++G + L+AT +A GLDI V+ Y + Sbjct 577 LLGLKAAELHGSMSQEQRIKSVENFREGKVAFLLATDLASRGLDIKGVETVINYEAPQSH 636 Query 463 ISMVQARGR-ARADQSVYA-FVATEGSRELKRELIN-------EALETLMEQAVAAVQKM 513 + GR ARA +S A +A E R++ + + + + +++ AVA Sbjct 637 EIYLHRVGRTARAGRSGRACTIAAEPDRKIVKSAVKAGKAQGAKIVSRVVDPAVADEWAA 696 Query 514 DQAEYQAKIRD-LQQAALTKRAAQAAQRENQRQQ 546 + +I + LQ+ L K+ AQA + + + Sbjct 697 KAKGLEDEIEEVLQEEKLEKQMAQAEMQVTKGEN 730 Score = 54.8 bits (130), Expect = 3e-06, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 48/136 (35%), Gaps = 12/136 (9%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHL----ETVDGAKVVVLVNRVHLVTQ 62 Q + I AL GK+I+ TG+GKT A L V ++V +L+ L Q Sbjct 337 QQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLLFRPRKVPTSRVAILMPTRELAVQ 396 Query 63 HGEE---FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 D + L G R L + D++I T + + Sbjct 397 CYNVATKLATHTDITF--CQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSPS--- 451 Query 120 VELTVFSLIVVDECHH 135 + ++V+DE Sbjct 452 FTVDTLEILVLDEADR 467 >sp|Q6FJG1|FAL1_CANGA ATP-dependent RNA helicase FAL1 OS=Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=FAL1 PE=3 SV=1 Length=399 Score = 102 bits (253), Expect = 6e-22, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 55/147 (37%), Gaps = 16/147 (11%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K E L + S + +IF +++ L L+Q Sbjct 248 KEEWKFDTLCDIYDSLTITQCVIFCNSKKKVDWLAHKLKQSN--------------FAVI 293 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 S M Q ++ V+ +F+ G +L++T V G+D+ ++V+ Y L + V Sbjct 294 SMHGDMKQDERDRVMNEFRTGQSRVLISTDVWARGIDVQQVSLVINYDLPEITENYVHRI 353 Query 470 GR-ARADQSVYAF-VATEGSRELKREL 494 GR R + A T+ +E+ Sbjct 354 GRSGRFGRKGVAINFLTKIDASRMKEI 380 Score = 42.9 bits (99), Expect = 0.008, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 45/130 (35%), Gaps = 7/130 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE 65 Q I + GK++I +G GKT + ++ + +VL L Q G+ Sbjct 50 QSRAITQIISGKDVIAQAQSGTGKTATFTIGMLQAIDLKKHDLQALVLSPTRELAAQIGK 109 Query 66 EFRRMLD-GRWTVTTLSGDMGPRAGFGHLAR-CHDLLICTAELLQMALTSPEEEEHVELT 123 + D ++G + + + ++ T + + +E Sbjct 110 VVTNLGDYMNVKAYAMTGGKTMKDDLKKIQKHGCQVISGTPGRVLDMIKRRL----IETR 165 Query 124 VFSLIVVDEC 133 ++V+DE Sbjct 166 HVQILVLDEA 175 >sp|Q914K8|Y022_SIFVH Putative helicase 22 OS=Sulfolobus islandicus filamentous virus (isolate Iceland/Hveragerdi) OX=654908 GN=SIFV0022 PE=4 SV=1 Length=559 Score = 104 bits (258), Expect = 6e-22, Method: Composition-based stats. Identities = 52/262 (20%), Positives = 102/262 (39%), Gaps = 31/262 (12%) Query 1 MELRSYQWEVIMPALEGKNII----IWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNR 56 E+R+YQ I + N+I I PTG+GK+ A A L+ + AK+V VN Sbjct 172 FEMRNYQINSIKSWVSDVNVIGNGIIKAPTGSGKSVIAILSALEILKNKNNAKIVYAVNS 231 Query 57 VHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE 116 L+ Q + F + D + + +SG++ R + + + + + Sbjct 232 TTLLKQF-QNFAKKEDLPFVL--VSGEIDEIKKGE---RSDFIALS----ISYYYSKKKR 281 Query 117 EEHVELTVF----SLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGT 172 EH +L L+++DE HHT + V ++++ P LGL+A+P Sbjct 282 NEHEKLKELVTNADLVIIDEAHHTPANIVKSLLLD----------SPNSIRLGLSATPIR 331 Query 173 GGASKLDGAINHVLQLCANLDTWCIMSPQNCCP--QLQEHSQQPCKQYNLCHRRSQDPFG 230 +L+ + + ++ +D ++ + P ++ + P K + Sbjct 332 EDGKELE-IMGLLGKISFTIDYTELVRNRYLVPIEYIRYIPEIPKKLKLKIQDLDDNKDP 390 Query 231 DLLKKLMDQIHDHLEMPELSRK 252 + K + E + K Sbjct 391 ENFAKYYSSLLRSFEHSPNTNK 412 Score = 60.2 bits (144), Expect = 4e-08, Method: Composition-based stats. Identities = 30/141 (21%), Positives = 54/141 (38%), Gaps = 20/141 (14%) Query 331 FDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQ 390 F + L H P K + + N ++ R A L +++ Sbjct 393 FAKYYSSLLRSFEHSPNTNK------QIISKIKQLNQYPCLVIVRRIAIAKKLAEIMREN 446 Query 391 QGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHC 450 G S+ ++ E I+ ++ L +L++TS+A+EGLDIP+ Sbjct 447 --------------GIIADWVSSKTKLEERMEKIEALKNEKLQVLISTSLADEGLDIPNL 492 Query 451 NVVVRYGLLTNEISMVQARGR 471 +VV + I ++Q GR Sbjct 493 RLVVLLTQGKSRIKLIQRIGR 513 >sp|Q59MW2|DBP6_CANAL ATP-dependent RNA helicase DBP6 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DBP6 PE=3 SV=2 Length=606 Score = 104 bits (258), Expect = 6e-22, Method: Composition-based stats. Identities = 46/292 (16%), Positives = 110/292 (38%), Gaps = 24/292 (8%) Query 246 MPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAA 305 + + + + Q ++ L + + + V+ L +++ + + + +L Sbjct 329 IIDEADRLLNQSFQNWSNVLLDKID-SQINIAEVWKLSVQKLVFSATLTTDAGKLSSLKF 387 Query 306 LQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSS 365 + +K + + +F G L+ L + + S++ Sbjct 388 YNPRLIIVNDSK-------QLVNEIFTVPVTLSEFKIHLGVAKNSLKPLI-LTKFLISTN 439 Query 366 NSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQ 425 +IFT++ +S+ L L +++++ + N + + ++++ Sbjct 440 KLSNVLIFTKSNESSIRLTELLTSLFQKLSINLKIAFINSTNNRTSI-------RSKILK 492 Query 426 KFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVAT 484 +F + +N+L+ T + G+D+ V+ Y L + V GR ARA+Q YA+ Sbjct 493 QFSNQEVNILITTDLIARGIDVASITDVINYDLPNSSREYVHRVGRTARANQVGYAYSFC 552 Query 485 EGSRELKREL-------INEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAA 529 G E ++ +E + + D+ YQ + +LQQ A Sbjct 553 FGKGENSWFKKLAHEVSRSKEVENVDLNVKELISDRDEEIYQQALHELQQQA 604 Score = 52.9 bits (125), Expect = 9e-06, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 8/120 (7%) Query 20 IIIWLPTGAGKTRAAAYVAKR--HLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRW-T 76 I++ TG+GKT A + + V +V++LV L+ Q ++ G Sbjct 220 ILVNASTGSGKTLAYSIPIIESLYRRVVPRVRVIILVPTKPLINQVKSTLLQLSSGTNLQ 279 Query 77 VTTLSGDMGPRAGFGHLARCH-DLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH 135 + L D+ L + D+++ T L L + + L+ +++DE Sbjct 280 IAALKNDVSINDEKDSLTKSVPDIIVSTPGRLVEHLLNDS----INLSSLQYLIIDEADR 335 >sp|Q09775|ROK1_SCHPO ATP-dependent RNA helicase rok1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rok1 PE=3 SV=1 Length=481 Score = 103 bits (256), Expect = 6e-22, Method: Composition-based stats. Identities = 32/156 (21%), Positives = 62/156 (40%), Gaps = 20/156 (13%) Query 339 AHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI 398 L G + K+ +L +++ PR +IF + + A +L L +I Sbjct 263 QRLLFVGSDTSKIVILRQMISN---GELKPRVVIFVQDIERAKAL------YTELLFDEI 313 Query 399 RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL 458 ++ G + Q ++E + KF+ G + +L+AT + G+D +V+ + Sbjct 314 HVGVIHG--------ELPQAKREEALAKFRKGEIWVLIATDLLARGIDFHGVKMVINFDF 365 Query 459 LTNEISMVQARGR-ARADQSV--YAFVATEGSRELK 491 + S + GR RA + F E +K Sbjct 366 PQSVHSYIHRIGRTGRAGNTGQAVTFFTKEDGEYIK 401 Score = 53.6 bits (127), Expect = 4e-06, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 42/124 (34%), Gaps = 9/124 (7%) Query 16 EGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA--KVVVLVNRVHLVTQHGEEFRRMLDG 73 ++++ PTG+GKT A + + L+ + +++ L Q + ++ G Sbjct 82 SKRDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQIYRQAEKLSFG 141 Query 74 RWTVTTLSGDMGPRAGFGH--LARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVD 131 + L +D+ I T L A+ + + V+D Sbjct 142 TSLKIIELSKSNEKIQEKAPKLREKYDMCIGTPMRLVQAIQTG-----LSFEKVEFFVMD 196 Query 132 ECHH 135 E Sbjct 197 EADR 200 >sp|A1D1R8|DRS1_NEOFI ATP-dependent RNA helicase drs1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=drs1 PE=3 SV=1 Length=819 Score = 104 bits (260), Expect = 7e-22, Method: Composition-based stats. Identities = 47/214 (22%), Positives = 91/214 (43%), Gaps = 28/214 (13%) Query 343 THGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL 402 G E+ +L L + ++ R I+F R ++ AH + + Sbjct 524 RPGREDKRLGYLLYLCNEIYTG----RVIVFFRQKREAHRVRIVFG-------------- 565 Query 403 LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE 462 L+G + M+Q + + ++ F++G + L+AT +A GLDI V+ Y + Sbjct 566 LLGLKAAELHGSMSQEQRIKSVENFREGKVAFLLATDLASRGLDIKGVETVINYEAPQSH 625 Query 463 ISMVQARGR-ARADQSVYA-FVATEGSRELKRELIN-------EALETLMEQAVAAVQKM 513 + GR ARA +S A +A E R++ + + + + +++ AVA Sbjct 626 EIYLHRVGRTARAGRSGRACTIAAEPDRKIVKSAVKAGKAQGAKIVSRVVDPAVADEWAA 685 Query 514 DQAEYQAKIRD-LQQAALTKRAAQAAQRENQRQQ 546 + +I + LQ+ L K+ AQA + + + Sbjct 686 KAKGLEDEIEEVLQEEKLEKQMAQAEMQVTKGEN 719 Score = 54.4 bits (129), Expect = 3e-06, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 48/136 (35%), Gaps = 12/136 (9%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHL----ETVDGAKVVVLVNRVHLVTQ 62 Q + I AL GK+I+ TG+GKT A L V ++V +L+ L Q Sbjct 326 QQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLLFRPRKVPTSRVAILMPTRELAVQ 385 Query 63 HGEE---FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 D + L G R L + D++I T + + Sbjct 386 CYNVATKLATHTDITF--CQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSPS--- 440 Query 120 VELTVFSLIVVDECHH 135 + ++V+DE Sbjct 441 FTVDTLEILVLDEADR 456 >sp|Q9V3C0|DDX41_DROME ATP-dependent RNA helicase abstrakt OS=Drosophila melanogaster OX=7227 GN=abs PE=1 SV=1 Length=619 Score = 104 bits (258), Expect = 7e-22, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 65/175 (37%), Gaps = 22/175 (13%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ L LQ+ +P +IF +Q + +L LL G Sbjct 416 KVVYLLDCLQK-----TAPPVLIFAEKKQDVDCIHEYL--------------LLKGVEAV 456 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q ++ + ++ G ++LVAT VA +GLD P+ V+ Y + + + V Sbjct 457 AIHGGKDQEERSRAVDAYRVGKKDVLVATDVASKGLDFPNVQHVINYDMPDDIENYVHRI 516 Query 470 GRARADQS---VYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK 521 GR + + + + +L + +E E + + E+Q Sbjct 517 GRTGRSNTKGLATTLINKTTEQSVLLDLKHLLIEGKQEVPDFLDELAPETEHQHL 571 Score = 41.7 bits (96), Expect = 0.024, Method: Composition-based stats. Identities = 22/145 (15%), Positives = 44/145 (30%), Gaps = 20/145 (14%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAY--VAKRH-------LETVDGAKVVVLVNRV 57 Q + + L G+++I TG+GKT + E +G +++ Sbjct 204 QVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPVIMFALEQEYSLPFERNEGPYGLIICPSR 263 Query 58 HLVTQHGEEFRRMLD-------GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMA 110 L Q E + G + ++R +++ T L Sbjct 264 ELAKQTHEIIQHYSKHLQACGMPEIRSCLAMGGLPVSEALDVISRGVHIVVATPGRLMDM 323 Query 111 LTSPEEEEHVELTVFSLIVVDECHH 135 L + L + + +DE Sbjct 324 LDKK----ILTLDMCRYLCMDEADR 344 >sp|P0CQ91|MAK5_CRYNB ATP-dependent RNA helicase MAK5 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=MAK5 PE=3 SV=1 Length=772 Score = 104 bits (259), Expect = 7e-22, Method: Composition-based stats. Identities = 46/253 (18%), Positives = 88/253 (35%), Gaps = 36/253 (14%) Query 306 LQDFYHREHVTKTQILCAERRLLALFD--DRKNELAHLATHGPENPKLEMLEKILQRQFS 363 LQ R + L L + D ++E + PE + L + + Sbjct 410 LQKNLKRRSRSWKGKGKRSSTLEDLVEKLDFRDENPEVIDLSPEGGVVSSLRESMIESTK 469 Query 364 SSNSP-----------RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQS 412 R I+F + S+ L LQ Sbjct 470 DDKDLYLYYFLLRYPGRSIVFVNSI---DSIRRLLPLLTLLQLPVF-----------PLH 515 Query 413 THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR- 471 +H+ Q+ + + + +F+ +L+AT VA GLDIP + VV + L + + GR Sbjct 516 SHLQQKQRLKNLDRFKSNPKGILIATDVAARGLDIPQVDHVVHFNLPRTADAYIHRSGRT 575 Query 472 ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAAL 530 ARA +A + + + ++R L+ +E+ +A + +R+ + + Sbjct 576 ARAQNEGFALQLVSPDEKSVQRALM-----KSLERTHELPDLPIEAGFLPSLRE--RLRV 628 Query 531 TKRAAQAAQRENQ 543 +A R + Sbjct 629 ATEIEKAQHRATK 641 Score = 58.3 bits (139), Expect = 2e-07, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 55/155 (35%), Gaps = 23/155 (15%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK--------VVVLVNRVH 58 Q I + G++++ TG+GKT A + +L +K +VL Sbjct 199 QSRAIPAGITGRDVVGVAETGSGKTLAYSLPILHYLLGQRKSKAGIKRPLSALVLCPTRE 258 Query 59 LVTQ---HGEEFRRM-----------LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTA 104 L Q H + R +V ++ G + + L R D+++ T Sbjct 259 LALQVMDHLNALLKHALATPDGEKPQGPPRVSVGSVVGGLSAQKQKRILERGCDVIVATP 318 Query 105 ELLQMALTSPEEEEHVELTVFSLIVVDECHHTHKD 139 L + + +E + +V+DE ++ Sbjct 319 GRLWDLIKADDELA-TSVRTLRFLVIDEADRMIEN 352 >sp|Q6BT27|FAL1_DEBHA ATP-dependent RNA helicase FAL1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=FAL1 PE=3 SV=1 Length=399 Score = 102 bits (253), Expect = 7e-22, Method: Composition-based stats. Identities = 47/309 (15%), Positives = 102/309 (33%), Gaps = 48/309 (16%) Query 216 KQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEAAALAG 273 + C P +L +++ + + + G + + KL + + Sbjct 90 TKSKDCQALILSPTRELAQQIQSVVKHLGDYMNVHTHACIGGTHVGEDIKKLQQGQQIVS 149 Query 274 LQEQRVYALHLRRY----NDALLIHDTVRAVDALAALQDFYHREH--------------- 314 RV + RR N ++I D + + Y Sbjct 150 GTPGRVVDMIKRRNLATRNIKMMILDEADELMTKGFKEQIYEIYRYLPPGVQVVVVSATL 209 Query 315 ------VTKTQILCAERRLLALFDDRKNELAHLATHG-PENPKLEMLEKILQRQFSSSNS 367 VT + L+ D + E+ K + L + + S Sbjct 210 SREVLEVTGKFTTDPVKILVKRDDITLEGIKQYHIQCEKEDWKFDTLCDL----YDSLTI 265 Query 368 PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF 427 + +IF T+ + L +++ + + G M Q ++ ++ F Sbjct 266 TQAVIFCNTKVKVNWLTDQMKK------ANFTVVAMHG--------DMKQDERDSIMNDF 311 Query 428 QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATE 485 + G +L++T V G+D+ ++V+ Y L T++ + V GR R + A + T+ Sbjct 312 RTGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENYVHRIGRSGRFGRKGVAINLVTK 371 Query 486 GSRELKREL 494 + R++ Sbjct 372 EDVDELRDI 380 Score = 47.9 bits (112), Expect = 2e-04, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 44/129 (34%), Gaps = 6/129 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE 65 Q IM + GK+ I +G GKT + ++T + ++L L Q Sbjct 53 QSRAIMQIISGKDTIAQAQSGTGKTATFSIGMLEVIDTKSKDCQALILSPTRELAQQIQS 112 Query 66 EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 + + D T G L + ++ T + + + ++ Sbjct 113 VVKHLGDYMNVHTHACIGGTHVGEDIKKLQQGQQIVSGTPGRVVDMI----KRRNLATRN 168 Query 125 FSLIVVDEC 133 ++++DE Sbjct 169 IKMMILDEA 177 >sp|Q5RDL2|DDX24_PONAB ATP-dependent RNA helicase DDX24 OS=Pongo abelii OX=9601 GN=DDX24 PE=2 SV=1 Length=859 Score = 104 bits (259), Expect = 7e-22, Method: Composition-based stats. Identities = 89/565 (16%), Positives = 174/565 (31%), Gaps = 93/565 (16%) Query 7 QWEVIMPALEGK-NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q + PA+ K +I+ TG+GKT A + +H V Q + Sbjct 219 QVLTLAPAIRDKLDILGAAETGSGKTLA------------------FAIPMIHAVLQWQK 260 Query 66 EFRRMLDGRWTVTTLSGDMGPRAG---------FGHLARCHDLLICTAELLQMALTSPEE 116 R G+ P AG D + +E L + Sbjct 261 --RNAAPPPSNTEAPPGETRPEAGAETRSPGKAEAESDALPDDTVIESEALPSDTAAEAR 318 Query 117 E--EHVELTVFSLIVVDECHHTHKDTVYNVI-----------------------MSQYLE 151 L D+ + ++I + Q L+ Sbjct 319 AKTGGTVSDQALLFGDDDA----GEGPSSLIREKPVPKQNENEEENLDKEQTGNLKQELD 374 Query 152 LKLQRAQPLPQV--LGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQE 209 K + P+ LGL +P A ++ I+ V + + T ++ + Q + Sbjct 375 DKSATCKTYPKRPLLGLVLTPTRELAVQVKQHIDAVARF-TGIKTAILVGGMSTQKQQRM 433 Query 210 HSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAA 269 +++P + R + + L + + + + + + + ++ +L E Sbjct 434 LNRRP-EIVVATPGRLWELIKEKHYHLRNLRQLRCLVVDEADRMVEKGHFAELSQLLEML 492 Query 270 ALAGLQEQR---VYALHLRRYNDA---LLIHDTVRAVDALAALQDFYHREHVTKTQILCA 323 + +R V++ L + A +L + +D A L + + + Sbjct 493 NDSQYNPKRQTLVFSATLTLVHQAPARILHKKHTKKMDKTAKLDLLMQKIGMRGKPKVID 552 Query 324 ERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSL 383 R + L H + K L L + R ++F + L Sbjct 553 LTRN----EATVETLTETKIHCETDEKDFYLYYFLMQY-----PGRSLVFANSISCIKRL 603 Query 384 LLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEE 443 L+ + M Q+ + +++F +L+AT VA Sbjct 604 SGLLKVLDIMPLTLHAC--------------MHQKQRLRNLEQFARLEDCVLLATDVAAR 649 Query 444 GLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETL 502 GLDIP V+ Y + V GR ARA + + + + I + L+ Sbjct 650 GLDIPKVQHVIHYQVPRTSEIYVHRSGRTARATNEGLSLMLIGPEDVINFKKIYKTLKKD 709 Query 503 MEQAVAAVQKMDQAEYQAKIRDLQQ 527 + + VQ + +IR +Q Sbjct 710 EDIPLFPVQTKYMDVVKERIRLARQ 734 >sp|P0CR06|DBP10_CRYNJ ATP-dependent RNA helicase DBP10 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=DBP10 PE=3 SV=1 Length=802 Score = 104 bits (259), Expect = 7e-22, Method: Composition-based stats. Identities = 45/209 (22%), Positives = 73/209 (35%), Gaps = 37/209 (18%) Query 363 SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE 422 S++P+ I+F T+ + L+ G S + + Q +Q+ Sbjct 301 DPSSAPQAIVFVATKHHVDYVAELLRT--------------TGYRTSLIYSSLDQVARQQ 346 Query 423 VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYA- 480 + F+ ++LV T VA GLDIP + V+ Y V GR ARA + A Sbjct 347 QLAGFRSHQSDVLVVTDVAARGLDIPIMDHVINYDFPAGPRIFVHRVGRTARAGRKGTAY 406 Query 481 ----------------FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD 524 F+ TE E L + +E L E +D+ I Sbjct 407 SLIVKEDFPYLCDLHTFLGTERMGEPADVLRSLPIEQLSENVEYVFHNLDET--APHITA 464 Query 525 LQQAALTKRAAQAAQRENQRQQFPVEHVQ 553 L+ R Q ++ + P + Q Sbjct 465 LRNV---MRKGQGMFERSRTKANPTSYRQ 490 >sp|P0CR07|DBP10_CRYNB ATP-dependent RNA helicase DBP10 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=DBP10 PE=3 SV=1 Length=802 Score = 104 bits (259), Expect = 7e-22, Method: Composition-based stats. Identities = 45/209 (22%), Positives = 73/209 (35%), Gaps = 37/209 (18%) Query 363 SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE 422 S++P+ I+F T+ + L+ G S + + Q +Q+ Sbjct 301 DPSSAPQAIVFVATKHHVDYVAELLRT--------------TGYRTSLIYSSLDQVARQQ 346 Query 423 VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYA- 480 + F+ ++LV T VA GLDIP + V+ Y V GR ARA + A Sbjct 347 QLAGFRSHQSDVLVVTDVAARGLDIPIMDHVINYDFPAGPRIFVHRVGRTARAGRKGTAY 406 Query 481 ----------------FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD 524 F+ TE E L + +E L E +D+ I Sbjct 407 SLIVKEDFPYLCDLHTFLGTERMGEPADVLRSLPIEQLSENVEYVFHNLDET--APHITA 464 Query 525 LQQAALTKRAAQAAQRENQRQQFPVEHVQ 553 L+ R Q ++ + P + Q Sbjct 465 LRNV---MRKGQGMFERSRTKANPTSYRQ 490 >sp|Q6BJX6|DHH1_DEBHA ATP-dependent RNA helicase DHH1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DHH1 PE=3 SV=2 Length=516 Score = 103 bits (256), Expect = 7e-22, Method: Composition-based stats. Identities = 51/330 (15%), Positives = 108/330 (33%), Gaps = 27/330 (8%) Query 230 GDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND 289 G L+ + +++D + + + + ++V LSE + ++ + + + Sbjct 135 GTSLRDDILRLNDPVHVLVGTPGRVLDLASRKVADLSECPLFVMDEADKMLSREFKGIIE 194 Query 290 ALL-IHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPEN 348 +L T R +A + + Q L + + + ++ E Sbjct 195 QILAFFPTTRQSLLFSATFPLAVKSFM--DQHLTKPYEINLMDELTLRGISQFYAFVEEK 252 Query 349 PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN 408 KL L FS + IIF + L + + +G Sbjct 253 QKL----HCLNTLFSKLQINQAIIFCNSTNRVELLAKKITE--------------LGYSC 294 Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 M Q + +V +F+ G + +LV + + G+DI NVV+ + + + Sbjct 295 YYSHAKMPQHARNKVFHEFRQGKVRVLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHR 354 Query 469 RGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM-----DQAEYQAKI 522 GR R A + I + L T ++ A + K ++A Sbjct 355 IGRSGRFGHLGLAINLMSWNDRYNLYKIEQELGTEIKPIPATIDKSLYVAENEAAVPRPF 414 Query 523 RDLQQAALTKRAAQAAQRENQRQQFPVEHV 552 + Q + + + E + Q +V Sbjct 415 KIDQLPKGNETVHKKSGYEYKGQPEVSSNV 444 Score = 51.0 bits (120), Expect = 3e-05, Method: Composition-based stats. Identities = 27/129 (21%), Positives = 46/129 (36%), Gaps = 6/129 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLE-TVDGAKVVVLVNRVHLVTQHGE 65 Q E I AL G++I+ G GKT + + V+ + ++LV L Q + Sbjct 57 QEESIPMALAGRDILARAKNGTGKTASFVIPCLQQARPKVNKIQALILVPTRELALQTSQ 116 Query 66 EFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 R + +G R L +L+ T + + +L+ Sbjct 117 VVRTLGKHLGLQCMVTTGGTSLRDDILRLNDPVHVLVGTPGRVLD----LASRKVADLSE 172 Query 125 FSLIVVDEC 133 L V+DE Sbjct 173 CPLFVMDEA 181 >sp|Q1E2B2|DRS1_COCIM ATP-dependent RNA helicase DRS1 OS=Coccidioides immitis (strain RS) OX=246410 GN=DRS1 PE=3 SV=1 Length=840 Score = 104 bits (259), Expect = 8e-22, Method: Composition-based stats. Identities = 45/192 (23%), Positives = 83/192 (43%), Gaps = 23/192 (12%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 R I+F R ++ AH + L+G + M+Q + ++ F+ Sbjct 566 RVIVFFRQKKEAHRARIIFG--------------LLGLKAAELHGSMSQEQRINAVEAFR 611 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYA-FVATEG 486 DG + L+AT +A GLDI V+ Y + + GR ARA +S A +A E Sbjct 612 DGKVPFLLATDLASRGLDIKGVESVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEP 671 Query 487 SRELKRELIN-------EALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQ 539 R++ + + + + +++ AVA E QA+I D+ + ++ A+ Sbjct 672 DRKVVKAAVKAGRAQGAKIVSRVVDPAVADEWASKVEEMQAEIEDILKEEKEEKQLAQAE 731 Query 540 RENQRQQFPVEH 551 + +R Q ++H Sbjct 732 MQVKRGQNLIKH 743 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 23/117 (20%), Positives = 38/117 (32%), Gaps = 12/117 (10%) Query 26 TGAGKTRAAAYVAKRHL----ETVDGAKVVVLVNRVHLVTQHGEE---FRRMLDGRWTVT 78 TG+GKT A L V ++V +L+ L Q D + Sbjct 365 TGSGKTAAFIIPILERLLYRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTDITF--C 422 Query 79 TLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH 135 L G R L + D++I T + + + ++V+DE Sbjct 423 QLVGGFSLREQENVLKQRPDVIIATPGRFIDHMRNS---ASFTVDTLEILVLDEADR 476 >sp|Q5AAW3|DHH1_CANAL ATP-dependent RNA helicase DHH1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DHH1 PE=3 SV=1 Length=549 Score = 103 bits (256), Expect = 8e-22, Method: Composition-based stats. Identities = 61/394 (15%), Positives = 119/394 (30%), Gaps = 39/394 (10%) Query 165 GLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRR 224 G TAS + +N V L + L +H C Sbjct 79 GKTASFIIPCLQLVKPKLNKVQALILVPTRELALQTSQVVRTLGKHVGTQCMVTTG---- 134 Query 225 SQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHL 284 G L+ + ++HD + + + + ++VV LSE + ++ + Sbjct 135 -----GTSLRDDIVRLHDPVHILVGTPGRVLDLAARKVVDLSECPLFVMDEADKMLSREF 189 Query 285 RRYNDALL-IHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLAT 343 + + +L R +A + + K L + + + ++ Sbjct 190 KGIIEQILEFFPPNRQALLFSATFPLAVKSFMDK--HLTKPYEINLMDELTLKGISQFYA 247 Query 344 HGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLL 403 E KL L FS + IIF + L + + Sbjct 248 FVEEKQKL----HCLNTLFSKLQINQSIIFCNSTNRVELLAKKITE-------------- 289 Query 404 IGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI 463 +G M Q+ + +V +F+ G + LV + + G+DI NVV+ + Sbjct 290 LGYSCYYSHAKMPQQARNKVFHEFRQGKVRNLVCSDLLTRGIDIQAVNVVINFDFPKTAE 349 Query 464 SMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKI 522 + + GR R A + R + + + L + +D++ Y A+ Sbjct 350 TYLHRIGRSGRFGHLGLAINLMSWN---DRYSLYKIEQELGTEIKPIPATIDKSLYVAEN 406 Query 523 RDLQQAALTKRAAQAAQREN-----QRQQFPVEH 551 D Q + PV+ Sbjct 407 ADAVPRPFRIDELPKGNETVHNKGYQYKGQPVKD 440 Score = 54.8 bits (130), Expect = 2e-06, Method: Composition-based stats. Identities = 36/167 (22%), Positives = 67/167 (40%), Gaps = 15/167 (9%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLE-TVDGAKVVVLVNRVHLVTQHGE 65 Q E I AL G++I+ G GKT + + ++ ++ + ++LV L Q + Sbjct 57 QEESIPMALAGRDILARAKNGTGKTASFIIPCLQLVKPKLNKVQALILVPTRELALQTSQ 116 Query 66 EFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHD---LLICTAELLQMALTSPEEEEHVEL 122 R + T ++ G + + R HD +L+ T + + V+L Sbjct 117 VVRTLGKHVGTQCMVT--TGGTSLRDDIVRLHDPVHILVGTPGRVLD----LAARKVVDL 170 Query 123 TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS 169 + L V+DE D + + +E L+ P Q L +A+ Sbjct 171 SECPLFVMDEA-----DKMLSREFKGIIEQILEFFPPNRQALLFSAT 212 >sp|Q0CZN5|DRS1_ASPTN ATP-dependent RNA helicase drs1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=drs1 PE=3 SV=1 Length=821 Score = 104 bits (259), Expect = 8e-22, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 69/158 (44%), Gaps = 20/158 (13%) Query 343 THGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL 402 G E+ +L L + + ++ R I+F R ++ AH + + Sbjct 529 RPGREDKRLGYLLYLCKEIYTG----RVIVFFRQKREAHRVRIVFG-------------- 570 Query 403 LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE 462 L+G + M+Q + + ++ F+DG + L+AT +A GLDI V+ Y + Sbjct 571 LLGLKAAELHGSMSQEQRIKSVENFRDGKVAFLLATDLASRGLDIKGVETVINYEAPQSH 630 Query 463 ISMVQARGR-ARADQSVYA-FVATEGSRELKRELINEA 498 + GR ARA +S A +A E R++ + + + Sbjct 631 EIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAAVKAS 668 Score = 52.5 bits (124), Expect = 1e-05, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 48/136 (35%), Gaps = 12/136 (9%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHL----ETVDGAKVVVLVNRVHLVTQ 62 Q + I AL GK+I+ TG+GKT A L V ++V +L+ L Q Sbjct 331 QRKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLLFRPRKVPTSRVAILMPTRELAVQ 390 Query 63 HGEE---FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 D + L G R L + D++I T + + Sbjct 391 CYNVATKLATYTDITF--CQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNS---AS 445 Query 120 VELTVFSLIVVDECHH 135 + ++V+DE Sbjct 446 FTVDTLEILVLDEADR 461 >sp|Q54IV3|DDX42_DICDI Probable ATP-dependent RNA helicase ddx42 OS=Dictyostelium discoideum OX=44689 GN=ddx42 PE=3 SV=1 Length=986 Score = 104 bits (259), Expect = 8e-22, Method: Composition-based stats. Identities = 64/382 (17%), Positives = 119/382 (31%), Gaps = 60/382 (16%) Query 167 TASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQP-CKQYNLCHRRS 225 T +P A + + ++ + T + P + QP ++ + Sbjct 327 TPTPIQKQAIPIALSGRDLIAIA---KTGSGKTATFIWPSISHIMDQPYLEKGDGPIALF 383 Query 226 QDPFGDLLKKLMDQIHDHLEMPELSR--KFGTQMYEQQVVKLSEAAALAGLQEQRVYAL- 282 P +L ++ + + + +L +G +QQ +L + R+ + Sbjct 384 LAPTRELAHQIYLETLKYSKYFKLKTTVLYGGVSKQQQCKELKAGCEIIVATPGRLIDMI 443 Query 283 ----HLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD----R 334 L++ + + D F V R LF Sbjct 444 KLKATKLNRVSYLVLDEADKMFD-------FGFGPQVLSIVNHVRPDRQTLLFSATFKPN 496 Query 335 KNELAHLATHGPE----------NPKLEMLEKILQRQFSSSN-----------SPRGIIF 373 E A P N + + ++L+ N +IF Sbjct 497 VEEFARTILSDPIKISIGMIGSANSDITQIVQVLKSDSDKWNWLTNQLALLLSQGSVLIF 556 Query 374 TRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN 433 T+ + L L + G + Q ++ + IQ F++G +N Sbjct 557 VSTKVAVEQLSSNLTKF--------------GFQTCTLHGDKNQIERSQTIQTFKEGKIN 602 Query 434 LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELK 491 +L+AT VA GLDIP VV Y + S GR RA + A+ + T Sbjct 603 ILIATDVAARGLDIPLIKNVVNYDTSRDIESHTHRIGRTGRAGNTGVAYTLITPKDIHFS 662 Query 492 RELINEALETLMEQAVAAVQKM 513 +LI LE+ + + + Sbjct 663 VDLIKN-LESASQFVPPELIDV 683 Score = 67.9 bits (164), Expect = 2e-10, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 52/134 (39%), Gaps = 11/134 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTR------AAAYVAKRHLETVDGAKVVVLVNRVHLV 60 Q + I AL G+++I TG+GKT + + + +LE DG + L L Sbjct 332 QKQAIPIALSGRDLIAIAKTGSGKTATFIWPSISHIMDQPYLEKGDGPIALFLAPTRELA 391 Query 61 TQHGEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 Q E + + T L G + + L ++++ T L + Sbjct 392 HQIYLETLKYSKYFKLKTTVLYGGVSKQQQCKELKAGCEIIVATPGRLIDMIKLKA---- 447 Query 120 VELTVFSLIVVDEC 133 +L S +V+DE Sbjct 448 TKLNRVSYLVLDEA 461 >sp|Q2HGF7|DBP5_CHAGB ATP-dependent RNA helicase DBP5 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=DBP5 PE=3 SV=1 Length=479 Score = 102 bits (255), Expect = 9e-22, Method: Composition-based stats. Identities = 34/214 (16%), Positives = 79/214 (37%), Gaps = 32/214 (15%) Query 332 DDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQ 391 D ++ + P+ K IL + + +IF RTR+SA + Q+ Sbjct 280 DLTVKGISQMYMDCPDESK---KYDILCKLYGLMTIGSSVIFVRTRESASEI------QR 330 Query 392 GLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN 451 ++ + L GA +++ ++ F+ G +L+ T+V G+D+ + Sbjct 331 RMEADGHKVSALHGAHEG--------QNRDALLDDFRSGRSKVLITTNVLARGIDVSSVS 382 Query 452 VVVRYGLL--------TNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETL 502 +V+ Y + + + + GR R + + + +AL + Sbjct 383 MVINYDIPMKGPGDKEPDMETYLHRIGRTGRFGRVGVSISFVYDRKS------YDALSKI 436 Query 503 MEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQ 536 + + ++ ++ A +Q+ + RA Sbjct 437 ADHYGLDLVQLAPDDWDATETKVQEVIKSSRARP 470 Score = 50.2 bits (118), Expect = 4e-05, Method: Composition-based stats. Identities = 16/118 (14%), Positives = 41/118 (35%), Gaps = 8/118 (7%) Query 18 KNIIIWLPTGAGKT--RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRW 75 +N+I +G GKT +++ L + ++L L Q + G++ Sbjct 112 RNMIAQSQSGTGKTAAFVLTVLSRVDLTKPTQPQALLLAPSRELARQIQSVIQ--TIGQF 169 Query 76 TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC 133 P + ++++ T + + +++ ++V+DE Sbjct 170 CENLNVEAAIPGSISRETGVRANVVVGTPGTVMDLI----RRRQFDVSQLKIMVIDEA 223 >sp|Q10RI7|RH38_ORYSJ DEAD-box ATP-dependent RNA helicase 38 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0158200 PE=3 SV=1 Length=505 Score = 102 bits (255), Expect = 1e-21, Method: Composition-based stats. Identities = 42/231 (18%), Positives = 87/231 (38%), Gaps = 38/231 (16%) Query 306 LQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSS 365 ++DF R QI + L + + E K+ +++ + Sbjct 296 VKDFVTRVIKDGNQIFVKKEELTL-----EKVKQYKVQVPDERAKIAVIKDKIFEF--GQ 348 Query 366 NSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQ 425 + IIF RT+QS + L + + SS + Q +++++IQ Sbjct 349 KVGQVIIFVRTKQSTKDVHNALTLEDYVC--------------SSIQGSLDQSEREKIIQ 394 Query 426 KFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL--------TNEISMVQARGRARA-DQ 476 +F++G +L++T V G D N+V+ Y + + + GRA + Sbjct 395 EFKNGYTKVLISTDVLARGFDQAQVNLVINYDMPIKFGTRDEPDYEVYLHRIGRAGRFGR 454 Query 477 SVYAF--VATEGSRELKRELINEALETLMEQAVAAVQKMD-QAEYQAKIRD 524 F + E + R+ +ET + V V+ + +++ ++D Sbjct 455 KGAVFNLLCGETDNTVMRK-----IETYFQHNVPEVRNWQSEEDFERALKD 500 Score = 46.3 bits (108), Expect = 7e-04, Method: Composition-based stats. Identities = 29/165 (18%), Positives = 51/165 (31%), Gaps = 27/165 (16%) Query 18 KNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKV---VVLVNRVHLVTQHGEEFRRMLDGR 74 K++I G+GKT KV + + L Q+ RM Sbjct 141 KDLIAQAHNGSGKTTCFVLGML--SRVDPNRKVTQAICICPTRELAQQNKSVLMRMGKF- 197 Query 75 WTVTTLSGDMGPRAGFGHLARCH------DLLICTAELLQMALTSPEEEEHVELTVFSLI 128 P A ++ ++I T+ L + + + ++ Sbjct 198 --TGITCACAIPPAQKDYVPIAKMPKITDQVVIGTSGTLMKWIN----HKKILTNDIKIL 251 Query 129 VVDECHHTHKDTVYN----VIMSQYLELKLQRAQPLPQVLGLTAS 169 V DE H + + IM +QR+ QVL +A+ Sbjct 252 VFDEADHMLAEDGFRSDSERIMRD-----IQRSAGGCQVLLFSAT 291 >sp|O22907|RH24_ARATH DEAD-box ATP-dependent RNA helicase 24 OS=Arabidopsis thaliana OX=3702 GN=RH24 PE=1 SV=2 Length=760 Score = 103 bits (257), Expect = 1e-21, Method: Composition-based stats. Identities = 36/149 (24%), Positives = 56/149 (38%), Gaps = 19/149 (13%) Query 352 EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ 411 E L +L++ + ++F + + + L + L G Sbjct 458 EKLPWLLEKLPGMIDEGDVLVFASKKATVDEIE------AQLTLNSFKVAALHG------ 505 Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 Q + E +QKF+ G ++L+AT VA GLDI VV Y + + V GR Sbjct 506 --DKDQASRMETLQKFKSGVHHVLIATDVAARGLDIKSLKTVVNYDIAKDMDMHVHRIGR 563 Query 472 -ARAD---QSVYAFVATEGSRELKRELIN 496 RA Y V +R EL+N Sbjct 564 TGRAGDRDGVAYTLVTQREAR-FAGELVN 591 Score = 55.2 bits (131), Expect = 1e-06, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 50/136 (37%), Gaps = 11/136 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRH------LETVDGAKVVVLVNRVHLV 60 Q + + L G+++I TG+GKT A H L+ +G V+ L Sbjct 255 QCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELA 314 Query 61 TQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 Q E ++ V+ + G M F L ++++ T L L Sbjct 315 HQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKELKAGCEIVVATPGRLIDMLKMKA---- 370 Query 120 VELTVFSLIVVDECHH 135 + + S +V+DE Sbjct 371 LTMMRASYLVLDEADR 386 >sp|Q2TBP1|DDX25_BOVIN ATP-dependent RNA helicase DDX25 OS=Bos taurus OX=9913 GN=DDX25 PE=2 SV=1 Length=483 Score = 102 bits (254), Expect = 1e-21, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 71/183 (39%), Gaps = 32/183 (17%) Query 345 GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI 404 G K + L I + + IIF +TR++A L + + Q Sbjct 320 GNRKDKYQALCNI----YGGITIGQAIIFCQTRRNAKWLTVEMMQD-------------- 361 Query 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL----- 459 G S S +T + +IQ+F+DG +L+ T+V G+D+ +VV + L Sbjct 362 GHQVSLLSGELTVDQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVNQAE 421 Query 460 -TNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAE 517 + + + GR R + AF E + L + + ++++++D + Sbjct 422 EPDYETYLHRIGRTGRFGKKGLAFNMIEVDKL-------PLLMKIQDHFNSSIKQLDPED 474 Query 518 YQA 520 Sbjct 475 MDE 477 Score = 49.0 bits (115), Expect = 1e-04, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 41/119 (34%), Gaps = 9/119 (8%) Query 18 KNIIIWLPTGAGKTRAAAYVAK---RHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGR 74 +N+I +G GKT A L+ + + L L Q G RM Sbjct 137 QNLIAQSQSGTGKTAAFVLAMLSRVNALKLFP--QCLCLAPTYELALQTGRVVERMGKFC 194 Query 75 WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC 133 V + G R G ++I T + + + ++LT + V+DE Sbjct 195 VDVQVMYAIRGNRIPRGTDV-TKQIVIGTPGTVLD---WCFKRKLIDLTKIRVFVLDEA 249 >sp|A4RIF1|DBP5_PYRO7 ATP-dependent RNA helicase DBP5 OS=Pyricularia oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 GN=DBP5 PE=3 SV=2 Length=477 Score = 102 bits (253), Expect = 1e-21, Method: Composition-based stats. Identities = 36/291 (12%), Positives = 97/291 (33%), Gaps = 33/291 (11%) Query 256 QMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDF-YHREH 314 + ++ +S+ L + + + + + + L F H + Sbjct 200 DLIRRRQFDVSQLKLLVVDEADNMLDQQGLGEQCVRVKNMLPKTIQTLLFSATFPDHVKS 259 Query 315 VTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFT 374 + A + L + ++ + P L+ ++L + + +IF Sbjct 260 YAEKFAPQANQMKLRQQELTVKGISQMYMDCPS---LKEKYEVLCKLYGLMTIGSSVIFV 316 Query 375 RTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNL 434 +TR+SA + ++ G S+ +++ +++ F+ G + Sbjct 317 KTRESADEIQRRMEAD--------------GHKVSALHGAFQGQERDQLLDDFRSGKSKV 362 Query 435 LVATSVAEEGLDIPHCNVVVRYGLL--------TNEISMVQARGR-ARADQSVYAFVATE 485 L+ T+V G+D+ ++V+ Y + + + + GR R + + Sbjct 363 LITTNVLARGIDVSSVSMVINYDIPMKGPGDQSPDAETYLHRIGRTGRFGRVGVSISFVH 422 Query 486 GSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQ 536 + AL ++ E + ++ ++ +Q + RA Sbjct 423 DRKSFT------ALSSIAEHYGIDLIQLSPDDWDDTEVKVQDVIKSSRAKP 467 Score = 54.4 bits (129), Expect = 2e-06, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 42/118 (36%), Gaps = 8/118 (7%) Query 18 KNIIIWLPTGAGKT--RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRW 75 +N+I +G GKT +++ + + + L L Q + + G++ Sbjct 109 RNMIAQSQSGTGKTGAFVVTILSRVDFNQPNQPQALALAPSRELARQIQSVIQSI--GQF 166 Query 76 TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC 133 + P A ++++ T + + +++ L+VVDE Sbjct 167 CTGLVVDAAIPGAISRETGVKANVVVGTPGTVMDLI----RRRQFDVSQLKLLVVDEA 220 >sp|A1CNV8|DRS1_ASPCL ATP-dependent RNA helicase drs1 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=drs1 PE=3 SV=1 Length=826 Score = 103 bits (257), Expect = 1e-21, Method: Composition-based stats. Identities = 36/155 (23%), Positives = 66/155 (43%), Gaps = 20/155 (13%) Query 343 THGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL 402 G E +L L + F+ R I+F R ++ AH + + Sbjct 531 RPGREGKRLGYLLYLCSEIFTG----RVIVFFRQKKEAHRVRIVFG-------------- 572 Query 403 LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE 462 L+G + M+Q + + ++ F++G + L+AT +A GLDI V+ Y + Sbjct 573 LLGLKAAELHGSMSQEQRIKSVESFREGKVAFLLATDLASRGLDIKGVETVINYEAPQSH 632 Query 463 ISMVQARGR-ARADQSVYA-FVATEGSRELKRELI 495 + GR ARA +S A +A + R++ + + Sbjct 633 EIYLHRVGRTARAGRSGRACTIAADPDRKVVKAAV 667 Score = 54.8 bits (130), Expect = 2e-06, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 49/134 (37%), Gaps = 8/134 (6%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHL----ETVDGAKVVVLVNRVHLVTQ 62 Q + I AL GK+I+ TG+GKT A L V ++V +L+ L Q Sbjct 333 QQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLLFRPRKVPTSRVAILMPTRELAVQ 392 Query 63 HGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVE 121 ++ T L G R L + D++I T + + Sbjct 393 CYNVATKLATHTDVTFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSPS---FT 449 Query 122 LTVFSLIVVDECHH 135 + ++V+DE Sbjct 450 VDTLEILVLDEADR 463 >sp|Q9QY16|DDX25_RAT ATP-dependent RNA helicase DDX25 OS=Rattus norvegicus OX=10116 GN=Ddx25 PE=1 SV=2 Length=483 Score = 102 bits (254), Expect = 1e-21, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 70/178 (39%), Gaps = 32/178 (18%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K + L I + + IIF +TR++A L + + Q G S Sbjct 325 KYQALCNI----YGGITIGQAIIFCQTRRNAKWLTVEMMQD--------------GHQVS 366 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL------TNEI 463 S +T + +IQ+F+DG +L+ T+V G+D+ +VV + L + Sbjct 367 LLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVNQSEEPDYE 426 Query 464 SMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA 520 + + GR R + AF E + L + + ++++++D + Sbjct 427 TYLHRIGRTGRFGKKGLAFNMIEVDKL-------PLLMKIQDHFNSSIKQLDPEDMDE 477 Score = 48.6 bits (114), Expect = 1e-04, Method: Composition-based stats. Identities = 26/119 (22%), Positives = 41/119 (34%), Gaps = 9/119 (8%) Query 18 KNIIIWLPTGAGKTRAAAYVAKRH---LETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGR 74 +N+I +G GKT A LE + + L L Q G RM Sbjct 137 QNLIAQSQSGTGKTAAFVLAMLNRVNALELFP--QCLCLAPTYELALQTGRVVERMGKFC 194 Query 75 WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC 133 V + G R G ++I T + + + ++LT + V+DE Sbjct 195 VDVEVMYAIRGNRIPRGTDV-TKQIVIGTPGTVLD---WCFKRKLIDLTKIRVFVLDEA 249 >sp|Q2GQ93|DHH1_CHAGB ATP-dependent RNA helicase DHH1 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=DHH1 PE=3 SV=1 Length=512 Score = 102 bits (254), Expect = 1e-21, Method: Composition-based stats. Identities = 53/317 (17%), Positives = 100/317 (32%), Gaps = 29/317 (9%) Query 229 FGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN 288 D + +L D +H + P +QV LSE + ++ ++ Sbjct 119 LRDDIVRLQDPVHIVVGTPGRILDLAG----KQVADLSECPMFIMDEADKLLSIEFTPVI 174 Query 289 DALLI-HDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPE 347 + LL H R V +A ++ K E + + + + + E Sbjct 175 EQLLRFHPKDRQVMLFSATFPISVKDFSDKNMTSPYE--INLMDELTLRGITQYYAYVEE 232 Query 348 NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG 407 K+ L FS + IIF + L + + +G Sbjct 233 KQKV----HCLNTLFSKLQINQSIIFCNSTNRVELLAKKITE--------------LGYS 274 Query 408 NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 M Q+ + V F++G LV + + G+DI NVV+ + N + + Sbjct 275 CFYSHAKMAQQARNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLH 334 Query 468 ARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQ 526 GR R A R + L + Q +D++ Y + + Sbjct 335 RIGRSGRYGHLGLAINLINWD---DRFNLYNIERDLGTEIQPIPQTIDKSLYVYENPESI 391 Query 527 QAALTKRAAQAAQRENQ 543 ++ Q++ Q Sbjct 392 PRPISNLKPAGIQQQQQ 408 Score = 52.9 bits (125), Expect = 7e-06, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 52/131 (40%), Gaps = 10/131 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG-AKV--VVLVNRVHLVTQH 63 Q E I AL G++I+ G GKT AA+V + +K+ ++LV L Q Sbjct 38 QEESIPVALVGRDILARAKNGTGKT--AAFVIPALEKINPKVSKIQCLILVPTRELAMQT 95 Query 64 GEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 + + + V +G G R L +++ T + ++ +L Sbjct 96 SQVCKTLGKHLGINVMVTTGGTGLRDDIVRLQDPVHIVVGTPGRILD----LAGKQVADL 151 Query 123 TVFSLIVVDEC 133 + + ++DE Sbjct 152 SECPMFIMDEA 162 >sp|A7EY76|DBP5_SCLS1 ATP-dependent RNA helicase dbp5 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 GN=dbp5 PE=3 SV=1 Length=470 Score = 102 bits (253), Expect = 1e-21, Method: Composition-based stats. Identities = 28/195 (14%), Positives = 68/195 (35%), Gaps = 30/195 (15%) Query 355 EKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH 414 +IL + + IIF + R +A + L + G ++ Sbjct 296 YEILVKLYGLMTIGSSIIFVKRRDTASHIAERLTAE--------------GHKVAAIHGA 341 Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL--------TNEISMV 466 ++ V++ F+ G +L+ T+V G+D+ ++V+ Y + + + + Sbjct 342 FEGAERDTVLEDFRQGKAKVLITTNVLARGIDVQSVSMVINYDIPMKGRSDFEPDPETYL 401 Query 467 QARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDL 525 GR R + + + +AL + + K++Q ++ ++ Sbjct 402 HRIGRTGRFGRVGVSISFVFDRKS------YDALNKIAHHYNIDLIKLNQDDWDE-TEEI 454 Query 526 QQAALTKRAAQAAQR 540 + + A R Sbjct 455 VKKVIKSSRAGTNLR 469 >sp|Q6C0X2|DHH1_YARLI ATP-dependent RNA helicase DHH1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DHH1 PE=3 SV=1 Length=522 Score = 102 bits (254), Expect = 1e-21, Method: Composition-based stats. Identities = 59/396 (15%), Positives = 115/396 (29%), Gaps = 46/396 (12%) Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 SP A + A +L N + P LQ+ + + K L +++ Sbjct 52 SPIQEEAIPIALAGRDILARAKN---GTGKTAAFVIPALQQVNPKVNKIQALIMVPTREL 108 Query 229 FGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN 288 ++ + HL + + GT + + +++L + + RV L + Sbjct 109 ALQT-SQVCKTLGKHLGIKVMVTTGGTNLRDD-IMRLEDTVHVLVGTPGRVLDLAGKGVA 166 Query 289 DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPEN 348 D L + +D L + + E R + LF + Sbjct 167 D--LSESPMFIMDEADKLLSPDFTPIIEQVLHFFPEDRQILLFSATFPLTVKAFMDRNLH 224 Query 349 PKLEM----------------------LEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLW 386 E+ L FS + + IIF + L Sbjct 225 KPYEINLMDELTLRGITQYYAFVDEKQKLHCLNTLFSKLDINQSIIFCNSTVRVELLARK 284 Query 387 LQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLD 446 + + +G M Q + V +F++GT LV + + G+D Sbjct 285 ITE--------------LGYSCYYSHAKMIQSHRNRVFHEFRNGTCRNLVCSDLLTRGID 330 Query 447 IPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQ 505 I NVV+ + N + + GR R A + I + L T ++ Sbjct 331 IQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGIAINLINWNDRYNLYKIEQELGTEIK- 389 Query 506 AVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRE 541 Q ++ + + + + Sbjct 390 -PIPAQIDKNLYVAESSENIPRPFPIADMPRGKESK 424 Score = 53.6 bits (127), Expect = 4e-06, Method: Composition-based stats. Identities = 29/133 (22%), Positives = 53/133 (40%), Gaps = 14/133 (11%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLE---TVDGAKVVVLVNRVHLVTQH 63 Q E I AL G++I+ G GKT AA+V + V+ + +++V L Q Sbjct 55 QEEAIPIALAGRDILARAKNGTGKT--AAFVIPALQQVNPKVNKIQALIMVPTRELALQT 112 Query 64 GEEFR---RMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 + + + L + VT +G R L +L+ T + + Sbjct 113 SQVCKTLGKHLGIKVMVT--TGGTNLRDDIMRLEDTVHVLVGTPGRVLD----LAGKGVA 166 Query 121 ELTVFSLIVVDEC 133 +L+ + ++DE Sbjct 167 DLSESPMFIMDEA 179 >sp|P0CQ80|DHH1_CRYNJ ATP-dependent RNA helicase DHH1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=DHH1 PE=3 SV=1 Length=625 Score = 103 bits (256), Expect = 1e-21, Method: Composition-based stats. Identities = 52/332 (16%), Positives = 106/332 (32%), Gaps = 32/332 (10%) Query 165 GLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRR 224 G TAS ++++ +++H+ L + C L + P Q + Sbjct 85 GKTASFIIPTLNRINTSLSHIQALILVPTRELALQTSQVCKTL--GAHIPNLQVMIT--T 140 Query 225 SQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHL 284 D + +L +H + P G+ + + L++ + ++ + Sbjct 141 GGTTLRDDILRLQQPVHILVGTPGRILDLGS----KGIASLNKCGVFVMDEADKLLSEDF 196 Query 285 RRYNDALL-IHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLAT 343 + L + R V +A + +E K Q + + + + + Sbjct 197 MPVIEQTLALCPQERQVMLFSATFPWTVKEF--KDQHMVQPYEINLMDELTLKGVTQYYA 254 Query 344 HGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLL 403 + E+ K+ L FS + IIF + L + + Sbjct 255 YVEESQKV----HCLNTLFSKLQINQSIIFCNSTNRVELLAKKVTE-------------- 296 Query 404 IGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI 463 +G M Q + V F++G LV + + G+DI NVV+ + Sbjct 297 LGYSCFYSHAKMQQAHRNRVFHDFRNGMTRNLVCSDLLTRGIDIQAVNVVINFDFPRTAE 356 Query 464 SMVQARGRARADQS---VYAFVATEGSRELKR 492 S + GR+ + + E L R Sbjct 357 SYLHRIGRSGRFGHLGLAISLLTLEDRHNLYR 388 Score = 49.0 bits (115), Expect = 1e-04, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 45/131 (34%), Gaps = 9/131 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT--RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHG 64 Q + I AL G++I+ G GKT R ++ + ++LV L Q Sbjct 63 QEQAIPMALTGRDILARAKNGTGKTASFI-IPTLNRINTSLSHIQALILVPTRELALQTS 121 Query 65 EEFRRML--DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 + + + V +G R L + +L+ T + + L Sbjct 122 QVCKTLGAHIPNLQVMITTGGTTLRDDILRLQQPVHILVGTPGRILD----LGSKGIASL 177 Query 123 TVFSLIVVDEC 133 + V+DE Sbjct 178 NKCGVFVMDEA 188 >sp|P0CQ81|DHH1_CRYNB ATP-dependent RNA helicase DHH1 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=DHH1 PE=3 SV=1 Length=625 Score = 103 bits (256), Expect = 1e-21, Method: Composition-based stats. Identities = 52/332 (16%), Positives = 106/332 (32%), Gaps = 32/332 (10%) Query 165 GLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRR 224 G TAS ++++ +++H+ L + C L + P Q + Sbjct 85 GKTASFIIPTLNRINTSLSHIQALILVPTRELALQTSQVCKTL--GAHIPNLQVMIT--T 140 Query 225 SQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHL 284 D + +L +H + P G+ + + L++ + ++ + Sbjct 141 GGTTLRDDILRLQQPVHILVGTPGRILDLGS----KGIASLNKCGVFVMDEADKLLSEDF 196 Query 285 RRYNDALL-IHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLAT 343 + L + R V +A + +E K Q + + + + + Sbjct 197 MPVIEQTLALCPQERQVMLFSATFPWTVKEF--KDQHMVQPYEINLMDELTLKGVTQYYA 254 Query 344 HGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLL 403 + E+ K+ L FS + IIF + L + + Sbjct 255 YVEESQKV----HCLNTLFSKLQINQSIIFCNSTNRVELLAKKVTE-------------- 296 Query 404 IGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI 463 +G M Q + V F++G LV + + G+DI NVV+ + Sbjct 297 LGYSCFYSHAKMQQAHRNRVFHDFRNGMTRNLVCSDLLTRGIDIQAVNVVINFDFPRTAE 356 Query 464 SMVQARGRARADQS---VYAFVATEGSRELKR 492 S + GR+ + + E L R Sbjct 357 SYLHRIGRSGRFGHLGLAISLLTLEDRHNLYR 388 Score = 49.0 bits (115), Expect = 1e-04, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 45/131 (34%), Gaps = 9/131 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT--RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHG 64 Q + I AL G++I+ G GKT R ++ + ++LV L Q Sbjct 63 QEQAIPMALTGRDILARAKNGTGKTASFI-IPTLNRINTSLSHIQALILVPTRELALQTS 121 Query 65 EEFRRML--DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 + + + V +G R L + +L+ T + + L Sbjct 122 QVCKTLGAHIPNLQVMITTGGTTLRDDILRLQQPVHILVGTPGRILD----LGSKGIASL 177 Query 123 TVFSLIVVDEC 133 + V+DE Sbjct 178 NKCGVFVMDEA 188 >sp|Q6CSZ7|DHH1_KLULA ATP-dependent RNA helicase DHH1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=DHH1 PE=3 SV=1 Length=514 Score = 102 bits (254), Expect = 1e-21, Method: Composition-based stats. Identities = 61/367 (17%), Positives = 116/367 (32%), Gaps = 44/367 (12%) Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 SP A + A +L N + P L++ + K L +++ Sbjct 60 SPIQEEAIPVAIAGKDILARAKN---GTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRE- 115 Query 229 FGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN 288 +++ + H + + GT + + +++L+E + RV L RR Sbjct 116 LALQTSQVVRTLGKHCGISCMVTTGGTNLRDD-IMRLNEPVHILVGTPGRVLDLASRRVT 174 Query 289 DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD------RKNELAHLA 342 D L + +D + + + ERR L LF ++ + HL Sbjct 175 D--LSECHLFIMDEADKMLSRDFKVLAEQILGFLPERRQLLLFSATFPVTVKEFMVKHLK 232 Query 343 THGPEN----------------PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLW 386 N + + L FS + IIF + L Sbjct 233 NPHEINLMDELTLKGISQFYAFVEEKQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKK 292 Query 387 LQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLD 446 + + +G M Q ++ +V +F+ G + LV + + G+D Sbjct 293 ITE--------------LGFSCYYSHARMKQSERNKVFHEFRQGKVRTLVCSDLLTRGID 338 Query 447 IPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQ 505 I NVV+ + + + GR R A + I + L T + Sbjct 339 IQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELNTEIAP 398 Query 506 AVAAVQK 512 + + K Sbjct 399 IPSQIDK 405 Score = 51.0 bits (120), Expect = 3e-05, Method: Composition-based stats. Identities = 30/132 (23%), Positives = 49/132 (37%), Gaps = 12/132 (9%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA----KVVVLVNRVHLVTQ 62 Q E I A+ GK+I+ G GKT AA+V LE V + +++V L Q Sbjct 63 QEEAIPVAIAGKDILARAKNGTGKT--AAFVI-PTLEKVKPKLNKIQALIMVPTRELALQ 119 Query 63 HGEEFRRMLDGRWTVTTL-SGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVE 121 + R + + +G R L +L+ T + + Sbjct 120 TSQVVRTLGKHCGISCMVTTGGTNLRDDIMRLNEPVHILVGTPGRVLD----LASRRVTD 175 Query 122 LTVFSLIVVDEC 133 L+ L ++DE Sbjct 176 LSECHLFIMDEA 187 >sp|A4RMV8|ROK1_PYRO7 ATP-dependent RNA helicase ROK1 OS=Pyricularia oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 GN=ROK1 PE=3 SV=1 Length=775 Score = 103 bits (256), Expect = 2e-21, Method: Composition-based stats. Identities = 68/417 (16%), Positives = 141/417 (34%), Gaps = 57/417 (14%) Query 171 GTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFG 230 G A++ D ++ + + +E S++P K+ N D Sbjct 343 GMRVAAEEDSTEKKSEDQEEDVFESEDEDSLSEDDEEREKSEKPSKKPNKAPITKADILV 402 Query 231 DLLKKLMDQIHDHLEMPELS----RKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR 286 L++ + + R + + +L + R L + Sbjct 403 TTPMLLLNFLSKGTSTTKKRLPRVRSLILDEADVLLDQLFREQTMGIWSACRNPNLRVSF 462 Query 287 YNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH-LATHG 345 ++ + + +D L A D R ++ L D ++H L Sbjct 463 WSATMASNIETHILDNLRAQAD--------DAPAPPLIRLVVGLKDTAVPNISHRLVYTA 514 Query 346 PENPKLEMLEKILQR-------------QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQG 392 E+ KL L ++L + + P ++F +T + A +L L+ Sbjct 515 TESGKLLALRQLLHPASFSTTTSSTTTPEDETPLRPPFLVFVQTIERATALHEELK---- 570 Query 393 LQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNV 452 DI A + + + M + + VI++F+ + +L+ T V G+D N Sbjct 571 ---YDIPAAAGGASRVAVLHSSMPESARAAVIRRFRAADVWVLITTDVLARGVDFAGVNG 627 Query 453 VVRYGLLTNEISMVQ---ARGRARADQSVYAFVATEGSRELKRELIN------------- 496 VV Y + + + V GRA + T+ + + N Sbjct 628 VVNYDVPGSAAAYVHRAGRTGRAGRKGGIAVTFYTKEDIPFVKNVANVIALSERQAGAGE 687 Query 497 EALETLMEQAVAAVQKMDQAEYQAKIRDLQQAA--------LTKRAAQAAQRENQRQ 545 A + + A+ V K D+ E + K + +++ +T ++A ++EN R+ Sbjct 688 SATQKWLLDALPDVSKKDKKELREKGVESRRSVAASKGKARITSKSAWERRKENNRK 744 >sp|A6RC50|DBP5_AJECN ATP-dependent RNA helicase DBP5 OS=Ajellomyces capsulatus (strain NAm1 / WU24) OX=2059318 GN=DBP5 PE=3 SV=1 Length=497 Score = 102 bits (253), Expect = 2e-21, Method: Composition-based stats. Identities = 33/192 (17%), Positives = 71/192 (37%), Gaps = 29/192 (15%) Query 352 EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ 411 E IL + + IIF +TR SA + + + G S Sbjct 316 EHKFDILVKFYGLLTIGSSIIFVKTRASAVEIERRMVAE--------------GHTVVSL 361 Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT----------- 460 + + + + E+I KF+ G +L+ T+V G+D+ ++V+ Y + Sbjct 362 TGGVEGQKRDEIIDKFRQGDAKVLITTNVLARGIDVQTVSMVINYDIPELHAPKATKRIA 421 Query 461 NEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQ 519 + + + GR R + A E + + + ++T + V D E + Sbjct 422 DAQTYLHRIGRTGRFGRVGVAVSFVASKEEWQ---MLQDIKTYFNTEIQRVNTQDWDEVE 478 Query 520 AKIRDLQQAALT 531 ++ + +++ Sbjct 479 EVVKTIIRSSRA 490 >sp|Q75C39|DBP5_EREGS ATP-dependent RNA helicase DBP5 OS=Eremothecium gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=DBP5 PE=3 SV=2 Length=466 Score = 101 bits (252), Expect = 2e-21, Method: Composition-based stats. Identities = 35/181 (19%), Positives = 67/181 (37%), Gaps = 23/181 (13%) Query 352 EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ 411 +L + IIF +T+Q+A+ L L+++ G S Sbjct 300 RHKFTVLCDLYGLLTIGSSIIFVQTKQTANMLYTELKRE--------------GHQVSIL 345 Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL------TNEISM 465 + D+ +I F++G +L+ T+V G+DIP ++VV Y L + + Sbjct 346 HGDLQSADRDRLIGDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPMTANGQPDPSTY 405 Query 466 VQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD 524 V GR R ++ A + E + + + V D E + ++ Sbjct 406 VHRIGRTGRFGRTGVAISFIHDKKSY--ETLAAIQSYFGDIQITKVPTDDMDEMEKIVKK 463 Query 525 L 525 + Sbjct 464 V 464 >sp|Q58Z64|DHH1_CRYNH ATP-dependent RNA helicase VAD1 OS=Cryptococcus neoformans var. grubii serotype A (strain H99 / ATCC 208821 / CBS 10515 / FGSC 9487) OX=235443 GN=VAD1 PE=1 SV=1 Length=616 Score = 102 bits (255), Expect = 2e-21, Method: Composition-based stats. Identities = 52/332 (16%), Positives = 106/332 (32%), Gaps = 32/332 (10%) Query 165 GLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRR 224 G TAS ++++ +++H+ L + C L + P Q + Sbjct 85 GKTASFIIPTLNRINTSLSHIQALILVPTRELALQTSQVCKTL--GAHIPNLQVMIT--T 140 Query 225 SQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHL 284 D + +L +H + P G+ + + L++ + ++ + Sbjct 141 GGTTLRDDILRLQQPVHILVGTPGRILDLGS----KGIAGLNKCGIFVMDEADKLLSEDF 196 Query 285 RRYNDALL-IHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLAT 343 + L + R V +A + +E K Q + + + + + Sbjct 197 MPVIEQTLALCPQERQVMLFSATFPWTVKEF--KDQHMVQPYEINLMDELTLKGVTQYYA 254 Query 344 HGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLL 403 + E+ K+ L FS + IIF + L + + Sbjct 255 YVEESQKV----HCLNTLFSKLQINQSIIFCNSTNRVELLAKKVTE-------------- 296 Query 404 IGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI 463 +G M Q + V F++G LV + + G+DI NVV+ + Sbjct 297 LGYSCFYSHAKMQQAHRNRVFHDFRNGMTRNLVCSDLLTRGIDIQAVNVVINFDFPRTAE 356 Query 464 SMVQARGRARADQS---VYAFVATEGSRELKR 492 S + GR+ + + E L R Sbjct 357 SYLHRIGRSGRFGHLGLAISLLTLEDRHNLYR 388 Score = 47.9 bits (112), Expect = 3e-04, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 45/131 (34%), Gaps = 9/131 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT--RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHG 64 Q + I AL G++I+ G GKT R ++ + ++LV L Q Sbjct 63 QEQAIPMALTGRDILARAKNGTGKTASFI-IPTLNRINTSLSHIQALILVPTRELALQTS 121 Query 65 EEFRRML--DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 + + + V +G R L + +L+ T + + L Sbjct 122 QVCKTLGAHIPNLQVMITTGGTTLRDDILRLQQPVHILVGTPGRILD----LGSKGIAGL 177 Query 123 TVFSLIVVDEC 133 + V+DE Sbjct 178 NKCGIFVMDEA 188 >sp|Q8Y755|CSHB_LISMO DEAD-box ATP-dependent RNA helicase CshB OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) OX=169963 GN=cshB PE=2 SV=1 Length=435 Score = 101 bits (251), Expect = 2e-21, Method: Composition-based stats. Identities = 54/421 (13%), Positives = 139/421 (33%), Gaps = 34/421 (8%) Query 149 YLELKLQRAQPLPQVL------GLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQN 202 + E + + +P +L G + + + + IN+V + + Sbjct 25 FYEPTEVQQKLIPGILKGESIIGQSQTGTGKTHTFILPIINNVNPEKDAVQAVITAPSRE 84 Query 203 CCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQV 262 Q+ ++ K G ++ +D++ ++ + + +Q Sbjct 85 LATQIYNEIRKVTKYSEKEIAVQLVIGGTDKQRAIDKLKKQPQIIVGTPGRINDLIREQA 144 Query 263 VKLSEAAALAGLQEQRVYALHLRRYNDAL-LIHDTVRAVDALAALQDFYHREHVTKTQIL 321 + + A L + + D + + +A + ++K Sbjct 145 LFVHTAKTLVIDEADMTLDMGFLNDVDHIAGKMPANLQMLVFSATIPQKLKPFLSKYMEN 204 Query 322 CAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAH 381 + K + N KL++L+ +L S I+FT T+ +A Sbjct 205 PRYEHIQPKVAASKTVEHRIMATRSRN-KLDLLKNVLV----GSQPYLAIVFTNTKTTAD 259 Query 382 SLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVA 441 + L ++ G + + R+++ +++ ++ +VAT +A Sbjct 260 EVANGLIER--------------GLKVAKIHGDVNPRERKRTMKQIENLDYQYVVATDLA 305 Query 442 EEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEAL 499 G+DI + VV Y L + + GR RA S A + + +L + Sbjct 306 ARGIDIQGISHVVNYELPDDLDFYIHRTGRTGRAGHSGIALTLFEPADEDRLNQLEKMGI 365 Query 500 E----TLMEQAVAAVQKMDQAEYQAKIRDL--QQAALTKRAAQAAQRENQRQQFPVEHVQ 553 E + ++ ++ + R+ + ++ A+ + N +++ + + Sbjct 366 EFKHVDWKNKEFVTLEDRNRRAKREAKRETADPREIGMRKKAKQKGKPNYKKKINYKMNE 425 Query 554 L 554 + Sbjct 426 I 426 Score = 61.0 bits (146), Expect = 2e-08, Method: Composition-based stats. Identities = 33/180 (18%), Positives = 58/180 (32%), Gaps = 27/180 (15%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAY-VAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q ++I L+G++II TG GKT + D + V+ L TQ Sbjct 32 QQKLIPGILKGESIIGQSQTGTGKTHTFILPIINNVNPEKDAVQAVITAPSRELATQIYN 91 Query 66 EFR---RMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 E R + + V + G + L + +++ T + + H Sbjct 92 EIRKVTKYSEKEIAVQLVIGGTDKQRAIDKLKKQPQIIVGTPGRINDLIREQALFVHTAK 151 Query 123 TVFSLIVVDEC------------HHTHKDTVYNVIMSQY-------LELKLQRAQPLPQV 163 T +V+DE H N+ M + L+ L + P+ Sbjct 152 T----LVIDEADMTLDMGFLNDVDHIAGKMPANLQMLVFSATIPQKLKPFLSKYMENPRY 207 >sp|Q9QY15|DDX25_MOUSE ATP-dependent RNA helicase DDX25 OS=Mus musculus OX=10090 GN=Ddx25 PE=1 SV=2 Length=484 Score = 101 bits (252), Expect = 2e-21, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 69/178 (39%), Gaps = 32/178 (18%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K + L I + + IIF +TR++A L + + Q G S Sbjct 326 KYQALCNI----YGGITIGQAIIFCQTRRNAKWLTVEMMQD--------------GHQVS 367 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL------TNEI 463 S +T + +IQ+F+DG +L+ T+V G+D+ +VV + L + Sbjct 368 LLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVNQSEEPDYE 427 Query 464 SMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA 520 + + GR R + AF E + L + + + ++++D + Sbjct 428 TYLHRIGRTGRFGKKGLAFNMIEVDKL-------PLLMKIQDHFNSNIKQLDPEDMDE 478 Score = 50.2 bits (118), Expect = 5e-05, Method: Composition-based stats. Identities = 26/119 (22%), Positives = 41/119 (34%), Gaps = 9/119 (8%) Query 18 KNIIIWLPTGAGKTRAAAYVAK---RHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGR 74 +N+I +G GKT A LE + + L L Q G RM Sbjct 138 QNLIAQSQSGTGKTAAFVLAMLSRVNALELFP--QCLCLAPTYELALQTGRVVERMGKFC 195 Query 75 WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC 133 V + G R G ++I T + + + ++LT + V+DE Sbjct 196 VDVEVMYAIRGNRIPRGTEV-TKQIIIGTPGTVLD---WCFKRKLIDLTKIRVFVLDEA 250 >sp|A1CFV3|DBP5_ASPCL ATP-dependent RNA helicase dbp5 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=dbp5 PE=3 SV=1 Length=487 Score = 101 bits (252), Expect = 2e-21, Method: Composition-based stats. Identities = 33/202 (16%), Positives = 71/202 (35%), Gaps = 32/202 (16%) Query 352 EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ 411 E K L + + IIF +TR SA + + + G +S Sbjct 306 EDKYKTLVQLYGLLTVGSSIIFVQTRTSASEIEKRMVAE--------------GHTVASL 351 Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT----------- 460 + + + E+I KF+ G +L+ T+V G+D+ ++V+ Y + Sbjct 352 TGGIDVTKRDEIIDKFRSGEAKVLITTNVLARGIDVSTVSMVINYDIPELHRPGVPERQA 411 Query 461 NEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQ 519 + + + GR R + + E + L + +Q++D ++ Sbjct 412 DFQTYLHRIGRTGRFGRVGVSISFVSNREEW------DMLNQIQRYFNTEIQRVDTKDWD 465 Query 520 AKIRDLQQAALTKRAAQAAQRE 541 +++ RA ++ Sbjct 466 EVEDIIKKTIKNTRANAQFGKQ 487 >sp|Q5AVM1|DBP5_EMENI ATP-dependent RNA helicase dbp5 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=dbp5 PE=3 SV=1 Length=477 Score = 101 bits (251), Expect = 3e-21, Method: Composition-based stats. Identities = 30/195 (15%), Positives = 70/195 (36%), Gaps = 29/195 (15%) Query 352 EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ 411 E + L + + IIF +TR SA + + + G +S Sbjct 298 EDKYRTLVQLYGLLTVGSSIIFVKTRASAVEIERRMVAE--------------GHTVASL 343 Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT----------- 460 + + + ++I +F+ G +L+ T+V G+D+ ++V+ Y + Sbjct 344 TGGIEGSQRDQIIDQFRAGHAKVLITTNVLARGIDVSTVSMVINYDIPELHQPPNRPRQA 403 Query 461 NEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQ 519 + + + GR R + + E E++N+ ++ + + D E + Sbjct 404 DFQTYLHRIGRTGRFGRVGVSISFVSNREE--WEMLNQ-IQKYFNTDIQRIDTKDWDEVE 460 Query 520 AKIRDLQQAALTKRA 534 I+ + + Sbjct 461 DIIKKTIKNTRAQAG 475 >sp|Q6C7X8|DBP10_YARLI ATP-dependent RNA helicase DBP10 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DBP10 PE=3 SV=1 Length=926 Score = 102 bits (255), Expect = 3e-21, Method: Composition-based stats. Identities = 50/311 (16%), Positives = 102/311 (33%), Gaps = 23/311 (7%) Query 179 DGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMD 238 D + +N D + +++ +Y +C + F + M+ Sbjct 210 DSLEEQFKMMMSNPDIIIATPGRFLHLKVEMELSLASVEY-ICFDEADRLFELGFGEQMN 268 Query 239 QIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVR 298 ++ L + F + + +V+ ++A + + L + + Sbjct 269 ELLASLPSNRQTLLFSATL-PKTLVEFAKAGLHDPILVRLDAETKLPEHLEMTFFAVKEN 327 Query 299 AVDA-LAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKI 357 DA LA + + + L RL D P+ K Sbjct 328 QRDACLAFILKEVIQMPFATPEQLKELERLDERAIDDGERDEDRKQKRPKFKKER----- 382 Query 358 LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ 417 L + I+F T+ +++ LQ +G S + Q Sbjct 383 LPPAHQLPSEKSTIVFCPTKHHVEYVIVLLQT--------------LGYAVSYIYGTLDQ 428 Query 418 RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQ 476 ++ + +F+ G ++LV T VA G+D+P V+ Y L + + GR ARA Sbjct 429 HARKNQLYRFRTGKTSILVVTDVAARGIDVPVLANVINYSLPPSPKVFIHRVGRTARAGN 488 Query 477 SVYAFVATEGS 487 +A+ + + Sbjct 489 RGWAYSIIKDN 499 Score = 51.7 bits (122), Expect = 2e-05, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 44/125 (35%), Gaps = 8/125 (6%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRHLE---TVDGAKVVVLVNRVHLVTQHGEEFRRML 71 LEGK+++ TG+GKT A L+ GA+ V+L L Q + + Sbjct 137 LEGKDVVGMARTGSGKTAAFVLPMLEKLKVHSAKVGARAVILSPSRELALQTLKVVKDFS 196 Query 72 DG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV 130 G + L G F + D++I T + E + L I Sbjct 197 AGTDLRLAMLVGGDSLEEQFKMMMSNPDIIIATPGRFLH----LKVEMELSLASVEYICF 252 Query 131 DECHH 135 DE Sbjct 253 DEADR 257 >sp|Q9LFN6|RH56_ARATH DEAD-box ATP-dependent RNA helicase 56 OS=Arabidopsis thaliana OX=3702 GN=RH56 PE=1 SV=2 Length=427 Score = 100 bits (248), Expect = 3e-21, Method: Composition-based stats. Identities = 39/252 (15%), Positives = 90/252 (36%), Gaps = 35/252 (14%) Query 286 RYNDALLIHDTVRAVDALAALQD--------------FYHREHVTKTQILCAERRLLALF 331 + ++ + + +++L +D ++K ++ + Sbjct 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPM 248 Query 332 DDRKNELAHLATHGPE--NPKLEMLE--KILQRQFSSSNSPRGIIFTRTRQSAHSLLLWL 387 + ++ A L HG KL +E + L + + + +IF ++ A L L Sbjct 249 EIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLL 308 Query 388 QQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDI 447 + + M+Q ++ + F++G +LVAT + G+DI Sbjct 309 VECNFPSI--------------CIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDI 354 Query 448 PHCNVVVRYGLLTNEISMVQARGRARA-DQSVYAFVATEGSRELKRELINEALETLMEQA 506 N+V+ Y + + + + GRA A + + E++N+ E Sbjct 355 ERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASD--SEVLNQVQERFEVDI 412 Query 507 VAAVQKMDQAEY 518 +++D + Y Sbjct 413 KELPEQIDTSTY 424 Score = 45.2 bits (105), Expect = 0.002, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 48/131 (37%), Gaps = 8/131 (6%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE 65 Q E I A+ G ++I +G GKT + +E G +VL + L Q Sbjct 73 QHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICN 132 Query 66 EFRRMLD--GRWTVTTLSGDMGPRAGFGHLARCH-DLLICTAELLQMALTSPEEEEHVEL 122 EF R V+ G + + L +++ T + + E+ + L Sbjct 133 EFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVL----ALAREKDLSL 188 Query 123 TVFSLIVVDEC 133 ++DEC Sbjct 189 KNVRHFILDEC 199 >sp|Q56XG6|RH15_ARATH DEAD-box ATP-dependent RNA helicase 15 OS=Arabidopsis thaliana OX=3702 GN=RH15 PE=1 SV=3 Length=427 Score = 100 bits (248), Expect = 3e-21, Method: Composition-based stats. Identities = 39/252 (15%), Positives = 90/252 (36%), Gaps = 35/252 (14%) Query 286 RYNDALLIHDTVRAVDALAALQD--------------FYHREHVTKTQILCAERRLLALF 331 + ++ + + +++L +D ++K ++ + Sbjct 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPM 248 Query 332 DDRKNELAHLATHGPE--NPKLEMLE--KILQRQFSSSNSPRGIIFTRTRQSAHSLLLWL 387 + ++ A L HG KL +E + L + + + +IF ++ A L L Sbjct 249 EIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLL 308 Query 388 QQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDI 447 + + M+Q ++ + F++G +LVAT + G+DI Sbjct 309 VECNFPSI--------------CIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDI 354 Query 448 PHCNVVVRYGLLTNEISMVQARGRARA-DQSVYAFVATEGSRELKRELINEALETLMEQA 506 N+V+ Y + + + + GRA A + + E++N+ E Sbjct 355 ERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASD--SEVLNQVQERFEVDI 412 Query 507 VAAVQKMDQAEY 518 +++D + Y Sbjct 413 KELPEQIDTSTY 424 Score = 45.2 bits (105), Expect = 0.002, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 48/131 (37%), Gaps = 8/131 (6%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE 65 Q E I A+ G ++I +G GKT + +E G +VL + L Q Sbjct 73 QHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICN 132 Query 66 EFRRMLD--GRWTVTTLSGDMGPRAGFGHLARCH-DLLICTAELLQMALTSPEEEEHVEL 122 EF R V+ G + + L +++ T + + E+ + L Sbjct 133 EFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVL----ALAREKDLSL 188 Query 123 TVFSLIVVDEC 133 ++DEC Sbjct 189 KNVRHFILDEC 199 >sp|Q4WIN6|DBP5_ASPFU ATP-dependent RNA helicase dbp5 OS=Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293) OX=330879 GN=dbp5 PE=3 SV=2 Length=489 Score = 101 bits (250), Expect = 3e-21, Method: Composition-based stats. Identities = 32/195 (16%), Positives = 69/195 (35%), Gaps = 29/195 (15%) Query 352 EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ 411 E + L + + IIF +TR +A + + + G S Sbjct 306 EDKYRTLVQLYGLLTVGSSIIFVQTRAAAQEIERRMTAE--------------GHTVVSL 351 Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT----------- 460 + + +I +F+ G +L+AT+V G+D+ ++V+ Y + Sbjct 352 TGERDPSVRDAIIDQFRRGEAKVLIATNVLARGIDVSTVSMVINYDIPELHQPNVPGRQA 411 Query 461 NEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQ 519 + + + GR R + + E E++N+ ++T + V D E + Sbjct 412 DFQTYLHRIGRTGRFGRVGVSISFVSNREE--WEMLNQ-IQTYFNCEIQRVDTKDWDEVE 468 Query 520 AKIRDLQQAALTKRA 534 I+ + + Sbjct 469 DIIKKTIKNSRANPK 483 >sp|A5DZX2|DBP5_LODEL ATP-dependent RNA helicase DBP5 OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) OX=379508 GN=DBP5 PE=3 SV=1 Length=511 Score = 101 bits (251), Expect = 3e-21, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 65/176 (37%), Gaps = 26/176 (15%) Query 352 EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ 411 E ++L + IIF + +A SL L ++++ G S Sbjct 339 EHKFEVLCELYGLLTIGSSIIFVEQKATADSLYLRMKEE--------------GHTVSIL 384 Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT------NEISM 465 + D+ +I F++G +L+ T+V G+DI ++VV Y L + + Sbjct 385 HGGLEVADRDRLIDDFREGRSKVLITTNVLARGIDIATVSMVVNYDLPRTKEGRPDPSTY 444 Query 466 VQARGRA---RADQSVYAFVATEGSRELKRELINEA-LETLMEQAVAAVQKMDQAE 517 + GR +FVA E + + + +E M V D+ E Sbjct 445 LHRIGRTGRFGRVGVSVSFVANEKDYQTLKYIAEYFGIEDQM--TVVPTDDWDEVE 498 >sp|Q5A9Z6|FAL1_CANAL ATP-dependent RNA helicase FAL1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=FAL1 PE=3 SV=1 Length=399 Score = 99.9 bits (247), Expect = 4e-21, Method: Composition-based stats. Identities = 28/157 (18%), Positives = 63/157 (40%), Gaps = 20/157 (13%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K + L + + + + +IF T+ + L +++Q + + G Sbjct 252 KFDTLCDL----YDNLTITQAVIFCNTKLKVNWLADQMKKQ------NFTVVAMHG---- 297 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 M Q ++ ++ F+ G +L++T V G+D+ ++V+ Y L T++ + + Sbjct 298 ----DMKQDERDSIMNDFRRGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENYIHRI 353 Query 470 GR-ARADQSVYAF-VATEGSRELKRELINEALETLME 504 GR R + A + T+ +E + E Sbjct 354 GRSGRFGRKGTAINLITKDDVVTLKEFEKYYSTKIKE 390 Score = 47.5 bits (111), Expect = 3e-04, Method: Composition-based stats. Identities = 20/129 (16%), Positives = 45/129 (35%), Gaps = 6/129 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG-AKVVVLVNRVHLVTQHGE 65 Q IM + G++ I +G GKT + ++T + ++L L Q Sbjct 53 QSRAIMQIISGRDTIAQAQSGTGKTATFSIGMLEVIDTKSKECQALILSPTRELAIQIQN 112 Query 66 EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 + + D T G L + ++ T + + + +++ Sbjct 113 VVKHLGDYMNIHTHACIGGKNVGEDVKKLQQGQQIVSGTPGRVIDVI----KRRNLQTRN 168 Query 125 FSLIVVDEC 133 ++++DE Sbjct 169 IKVLILDEA 177 >sp|A7TGU7|DHH1_VANPO ATP-dependent RNA helicase DHH1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 GN=DHH1 PE=3 SV=1 Length=484 Score = 101 bits (250), Expect = 4e-21, Method: Composition-based stats. Identities = 57/356 (16%), Positives = 116/356 (33%), Gaps = 22/356 (6%) Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 SP + + A +L N + P L++ + K L +++ Sbjct 58 SPIQEESIPVALAGRDILARAKN---GTGKTAAFVIPTLEKVKSKHNKIQALIMVPTRE- 113 Query 229 FGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN 288 +++ + H + + GT + + + +L+E + RV L R+ Sbjct 114 LALQTSQVVRTLGKHCGISCMVTTGGTNLRDDIL-RLNETVHILVGTPGRVLDLASRKVA 172 Query 289 DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPEN 348 D L + +D + + + + + + LF + Sbjct 173 D--LSECNLFIMDEADKMLSRDFKSIIEQILVFLPKNHQSLLFSATFPLSVKEFMVNHLH 230 Query 349 PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI-----RAQLL 403 E+ L + + + F +Q H L + Q Q + R +LL Sbjct 231 KPYEI---NLMDELTLKGITQYYAFVEEKQKLHCLNTLFSKLQINQAIIFCNSTNRVELL 287 Query 404 ------IGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG 457 +G M Q+++ V +F+ G + LV + + G+DI NVV+ + Sbjct 288 AKKITDLGYSCYYSHARMKQQERNRVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFD 347 Query 458 LLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQK 512 + + GR R A + I + L T ++ A + K Sbjct 348 FPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIQAIPATIDK 403 Score = 52.1 bits (123), Expect = 1e-05, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 48/129 (37%), Gaps = 6/129 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE 65 Q E I AL G++I+ G GKT A +++ + +++V L Q + Sbjct 61 QEESIPVALAGRDILARAKNGTGKTAAFVIPTLEKVKSKHNKIQALIMVPTRELALQTSQ 120 Query 66 EFRRMLDGRWTVTTL-SGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 R + + +G R L +L+ T + + +L+ Sbjct 121 VVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLD----LASRKVADLSE 176 Query 125 FSLIVVDEC 133 +L ++DE Sbjct 177 CNLFIMDEA 185 >sp|A3LWX3|DHH1_PICST ATP-dependent RNA helicase DHH1 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) OX=322104 GN=DHH1 PE=3 SV=1 Length=509 Score = 101 bits (250), Expect = 4e-21, Method: Composition-based stats. Identities = 54/361 (15%), Positives = 113/361 (31%), Gaps = 32/361 (9%) Query 165 GLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRR 224 G TAS ++ +N + L ++ + Q + + K + + Sbjct 79 GKTASFIIPSLQQIKPKLNKIQAL-------ILVPTRELALQTSQVVRTLGKHLGI--QC 129 Query 225 SQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHL 284 G LK + +++D + + + + + V LSE + ++ + Sbjct 130 MVTTGGTSLKDDILRLNDPVHVLVGTPGRVLDLAARSVADLSECPLFVMDEADKMLSREF 189 Query 285 RRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATH 344 + + +L + +L F + L + + + + Sbjct 190 KGIIEQILEF-FPKNRQSLLFSATFPLAVKSFMDKHLNKPYEINLMDELTLRGITQYYAF 248 Query 345 GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI 404 E KL L FS + IIF + L + + + Sbjct 249 VEEKQKL----HCLNTLFSKLQINQSIIFCNSTNRVELLAKKITE--------------L 290 Query 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 G M Q+ + +V +F+ G + LV + + G+DI NVV+ + + Sbjct 291 GYSCYYSHAKMPQQARNKVFHEFRQGKVRNLVCSDLLTRGIDIQAVNVVINFDFPKTAET 350 Query 465 MVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIR 523 + GR R A + R + + + L + +D+ Y A Sbjct 351 YLHRIGRSGRFGHLGLAINLMSWN---DRYSLYKIEQELGTEIKPIPATIDRKLYVADNE 407 Query 524 D 524 D Sbjct 408 D 408 Score = 50.2 bits (118), Expect = 6e-05, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 45/130 (35%), Gaps = 8/130 (6%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT--RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHG 64 Q E I AL G++++ G GKT ++ ++ + ++LV L Q Sbjct 57 QEESIPMALAGRDVLARAKNGTGKTASFI-IPSLQQIKPKLNKIQALILVPTRELALQTS 115 Query 65 EEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELT 123 + R + +G + L +L+ T + +L+ Sbjct 116 QVVRTLGKHLGIQCMVTTGGTSLKDDILRLNDPVHVLVGTPGRVLD----LAARSVADLS 171 Query 124 VFSLIVVDEC 133 L V+DE Sbjct 172 ECPLFVMDEA 181 >sp|Q4R8K5|IF4A1_MACFA Eukaryotic initiation factor 4A-I OS=Macaca fascicularis OX=9541 GN=EIF4A1 PE=2 SV=1 Length=406 Score = 99.9 bits (247), Expect = 4e-21, Method: Composition-based stats. Identities = 49/308 (16%), Positives = 109/308 (35%), Gaps = 39/308 (13%) Query 172 TGGASKLDGAINHVLQLCANLDTWC--IMSPQNCCPQLQEHSQQPCKQY--NLCHR--RS 225 +G AI+ + Q+ +L +++P Q + Y CH Sbjct 78 SGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGG 137 Query 226 QDPFGDLLKKLMDQIHDHLEMP-----ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVY 280 + ++ K M+ H + P L+R++ + Y + V L+ + ++Y Sbjct 138 TNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIY 197 Query 281 ALHLR-RYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELA 339 + + N +++ D L + F + + F Sbjct 198 DIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREE 257 Query 340 HLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIR 399 KL+ L + + + + +IF TR+ L + + D Sbjct 258 W---------KLDTLCDL----YETLTITQAVIFINTRRKVDWLT------EKMHARDFT 298 Query 400 AQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL 459 A + G M Q+++ ++++F+ G+ +L+ T + G+D+ ++V+ Y L Sbjct 299 ASAMHG--------DMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP 350 Query 460 TNEISMVQ 467 TN + + Sbjct 351 TNRENYIH 358 Score = 51.7 bits (122), Expect = 1e-05, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 64/185 (35%), Gaps = 12/185 (6%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE 65 Q I+P ++G ++I +G GKT A + +E A + +VL L Q + Sbjct 59 QQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQK 118 Query 66 EFRRMLDGRWTVTTLS-GDMGPRAGFGHL-ARCHDLLICTAELLQMALTSPEEEEHVELT 123 + D G RA L +++ T + L ++ Sbjct 119 VVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRR----YLSPK 174 Query 124 VFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAIN 183 + V+DE D + + + Q+ QV+ L+A+ + + Sbjct 175 YIKMFVLDEA-----DEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMR 229 Query 184 HVLQL 188 +++ Sbjct 230 DPIRI 234 >sp|P29562|IF4A1_RABIT Eukaryotic initiation factor 4A-I (Fragment) OS=Oryctolagus cuniculus OX=9986 GN=EIF4A1 PE=1 SV=2 Length=398 Score = 99.5 bits (246), Expect = 5e-21, Method: Composition-based stats. Identities = 48/308 (16%), Positives = 108/308 (35%), Gaps = 39/308 (13%) Query 172 TGGASKLDGAINHVLQLCANLDTWC--IMSPQNCCPQLQEHSQQPCKQY--NLCHR--RS 225 +G AI+ + Q+ +L +++P Q + Y CH Sbjct 70 SGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGG 129 Query 226 QDPFGDLLKKLMDQIHDHLEMP-----ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVY 280 + ++ K M+ H + P L+R++ + Y + V L+ + ++Y Sbjct 130 TNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIY 189 Query 281 ALHLR-RYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELA 339 + + N +++ D L + F + + F Sbjct 190 DIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREE 249 Query 340 HLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIR 399 KL+ L + + + + +IF TR+ L + + D Sbjct 250 W---------KLDTLCDL----YETLTITQAVIFINTRRKVDWLT------EKMHARDFT 290 Query 400 AQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL 459 + G M Q+++ ++++F+ G+ +L+ T + G+D+ ++V+ Y L Sbjct 291 VSAMHG--------DMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP 342 Query 460 TNEISMVQ 467 TN + + Sbjct 343 TNRENYIH 350 Score = 51.7 bits (122), Expect = 1e-05, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 64/185 (35%), Gaps = 12/185 (6%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE 65 Q I+P ++G ++I +G GKT A + +E A + +VL L Q + Sbjct 51 QQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQK 110 Query 66 EFRRMLDGRWTVTTLS-GDMGPRAGFGHL-ARCHDLLICTAELLQMALTSPEEEEHVELT 123 + D G RA L +++ T + L ++ Sbjct 111 VVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRR----YLSPK 166 Query 124 VFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAIN 183 + V+DE D + + + Q+ QV+ L+A+ + + Sbjct 167 YIKMFVLDEA-----DEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMR 221 Query 184 HVLQL 188 +++ Sbjct 222 DPIRI 226 >sp|Q4WCW2|SUB2_ASPFU ATP-dependent RNA helicase sub2 OS=Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293) OX=330879 GN=sub2 PE=3 SV=1 Length=448 Score = 100 bits (248), Expect = 5e-21, Method: Composition-based stats. Identities = 43/249 (17%), Positives = 88/249 (35%), Gaps = 23/249 (9%) Query 265 LSEAAALAGLQEQRVYALHLRRYNDALLIH-DTVRAVDALAALQDFYHREHVTKTQILCA 323 L E + ++ H+RR + + V +A R K Sbjct 210 LDECDKMLDQIGKQAQIAHMRRDVQEIFRATPADKQVMMFSATLSQEIRPICKKFMRNPL 269 Query 324 ERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSL 383 E + + L E+ K L ++L + IIF ++ A+ L Sbjct 270 EVYVDDDTKLTLHGLQQYYIKLSESEKNRKLNELLDSL----EFNQVIIFVKSTLRANEL 325 Query 384 LLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEE 443 L++ + + ++Q ++ + ++F++ + VAT V Sbjct 326 DKLLRECNFPSI--------------AVHSGVSQEERIKRYKEFKEFNKRICVATDVFGR 371 Query 444 GLDIPHCNVVVRYGLLTNEISMVQARGRARADQS---VYAFVATEGSRELKRELINEALE 500 G+DI N+ + Y L + S + GRA + +FV++E ++ +E I + E Sbjct 372 GIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLSISFVSSEEDEKVLKE-IEKRFE 430 Query 501 TLMEQAVAA 509 + + Sbjct 431 VALPEYPEG 439 Score = 47.9 bits (112), Expect = 3e-04, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 47/135 (35%), Gaps = 14/135 (10%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG-AKVVVLVNRVHLVTQ--- 62 Q I A+ +++ +G GKT LE V G V+V+ + L Q Sbjct 85 QQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQIKN 144 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHD----LLICTAELLQMALTSPEEEE 118 F + L T G P + + +++ T L AL ++ Sbjct 145 EYARFSKYLPDVKTAVFYGG--TPIQKDIEVLSNKESYPNIVVGTPGRL-NALVREKK-- 199 Query 119 HVELTVFSLIVVDEC 133 + L V+DEC Sbjct 200 -LSLRNVKAFVLDEC 213 >sp|A5DIP0|DHH1_PICGU ATP-dependent RNA helicase DHH1 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DHH1 PE=3 SV=1 Length=547 Score = 101 bits (250), Expect = 5e-21, Method: Composition-based stats. Identities = 55/394 (14%), Positives = 124/394 (31%), Gaps = 36/394 (9%) Query 165 GLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRR 224 G TAS ++ +N + L ++ + Q + + K L + Sbjct 78 GKTASFIIPALQQVKTKLNKIQVL-------ILVPTRELALQTSQVVKTLGKHLKL--QC 128 Query 225 SQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHL 284 G LL+ + ++ + + + + + + + SE + ++ + Sbjct 129 MVTTGGTLLRDDVMRLDEPVHILVGTPGRVLDLAARSIADFSECPMFVMDEADKMLSREF 188 Query 285 RRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATH 344 + + +L + +L F + L + + + ++ Sbjct 189 KGIIEQILEF-FPKNRQSLLFSATFPLAVKSFMDKHLNKPYEINLMDELTLRGISQFYAF 247 Query 345 GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI 404 E KL L FS + IIF + L + + + Sbjct 248 VEEKQKL----HCLNTLFSKLKINQAIIFCNSTNRVELLAKKITE--------------L 289 Query 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 G M Q+ + +V +F+ G++ LV + + G+DI NVV+ + + Sbjct 290 GYSCYYSHAKMPQQARNKVFHEFRQGSVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAET 349 Query 465 MVQARGR-ARADQSVYAF-VATEGSRE----LKRELINEA--LETLMEQAVAAVQKMDQA 516 + GR R A R+ ++ EL E + + +++++ + Sbjct 350 YLHRIGRSGRFGHLGLAINFIHWDDRKSLFNIETELGTEIKPIPSDIDRSLYVTEDEASI 409 Query 517 EYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVE 550 KI +L + R + Q Sbjct 410 PRPFKIDELPKGNEHSRKRNGYEYRGQPTSQGFP 443 Score = 49.4 bits (116), Expect = 8e-05, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 46/130 (35%), Gaps = 8/130 (6%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT--RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHG 64 Q E I AL G++I+ G GKT ++ ++ +V++LV L Q Sbjct 56 QEESIPMALAGRDILARAKNGTGKTASFI-IPALQQVKTKLNKIQVLILVPTRELALQTS 114 Query 65 EEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELT 123 + + + + +G R L +L+ T + + + Sbjct 115 QVVKTLGKHLKLQCMVTTGGTLLRDDVMRLDEPVHILVGTPGRVLD----LAARSIADFS 170 Query 124 VFSLIVVDEC 133 + V+DE Sbjct 171 ECPMFVMDEA 180 >sp|P20449|DBP5_YEAST ATP-dependent RNA helicase DBP5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DBP5 PE=1 SV=2 Length=482 Score = 100 bits (249), Expect = 5e-21, Method: Composition-based stats. Identities = 44/311 (14%), Positives = 99/311 (32%), Gaps = 33/311 (11%) Query 189 CANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPE 248 A+ C+ + Q E Q+ K + + + K++ + ++ Sbjct 160 DASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNKQI------NAQVIV 213 Query 249 LSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQD 308 + + +++++L + + + + + + Sbjct 214 GTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSAT 273 Query 309 FYHREHVTKTQILCAERRL-LALFDDRKNELAHLATHG-PENPKLEMLEKILQRQFSSSN 366 F +I+ L L + + + L E K +L + Sbjct 274 FADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKF----DVLTELYGLMT 329 Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 IIF T+++A+ L L+ + G S + +++ +I Sbjct 330 IGSSIIFVATKKTANVLYGKLKSE--------------GHEVSILHGDLQTQERDRLIDD 375 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT------NEISMVQARGR-ARADQSVY 479 F++G +L+ T+V G+DIP ++VV Y L T + + + GR R + Sbjct 376 FREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGV 435 Query 480 AFVATEGSREL 490 A Sbjct 436 AISFVHDKNSF 446 >sp|A6ZNQ1|DBP5_YEAS7 ATP-dependent RNA helicase DBP5 OS=Saccharomyces cerevisiae (strain YJM789) OX=307796 GN=DBP5 PE=3 SV=1 Length=482 Score = 100 bits (249), Expect = 5e-21, Method: Composition-based stats. Identities = 44/311 (14%), Positives = 99/311 (32%), Gaps = 33/311 (11%) Query 189 CANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPE 248 A+ C+ + Q E Q+ K + + + K++ + ++ Sbjct 160 DASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNKQI------NAQVIV 213 Query 249 LSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQD 308 + + +++++L + + + + + + Sbjct 214 GTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSAT 273 Query 309 FYHREHVTKTQILCAERRL-LALFDDRKNELAHLATHG-PENPKLEMLEKILQRQFSSSN 366 F +I+ L L + + + L E K +L + Sbjct 274 FADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKF----DVLTELYGLMT 329 Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 IIF T+++A+ L L+ + G S + +++ +I Sbjct 330 IGSSIIFVATKKTANVLYGKLKSE--------------GHEVSILHGDLQTQERDRLIDD 375 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT------NEISMVQARGR-ARADQSVY 479 F++G +L+ T+V G+DIP ++VV Y L T + + + GR R + Sbjct 376 FREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGV 435 Query 480 AFVATEGSREL 490 A Sbjct 436 AISFVHDKNSF 446 >sp|A2QUY7|DBP5_ASPNC ATP-dependent RNA helicase dbp5 OS=Aspergillus niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) OX=425011 GN=dbp5 PE=3 SV=1 Length=482 Score = 100 bits (249), Expect = 5e-21, Method: Composition-based stats. Identities = 31/193 (16%), Positives = 70/193 (36%), Gaps = 29/193 (15%) Query 352 EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ 411 E + L + IIF +TR SA + + + G +S Sbjct 303 EDKYQTLVNLYGLLTVGSSIIFVKTRASAQEIEKRMVAE--------------GHTVASL 348 Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT----------- 460 + + + VI +F+ G +L+ T+V G+D+ ++V+ Y + Sbjct 349 TGGIEGSQRDAVIDQFRAGHAKVLITTNVLARGIDVSTVSMVINYDIPEIHQPGARQRQA 408 Query 461 NEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQ 519 + + + GR R + + E E++N+ ++ + + D E + Sbjct 409 DFQTYLHRIGRTGRFGRVGVSISFVSNREE--WEMLNQ-IQRYFNTNIQRIDTKDWDEVE 465 Query 520 AKIRDLQQAALTK 532 I+ +++ + Sbjct 466 EIIKKTIKSSRAQ 478 >sp|P60843|IF4A1_MOUSE Eukaryotic initiation factor 4A-I OS=Mus musculus OX=10090 GN=Eif4a1 PE=1 SV=1 Length=406 Score = 99.5 bits (246), Expect = 5e-21, Method: Composition-based stats. Identities = 48/308 (16%), Positives = 108/308 (35%), Gaps = 39/308 (13%) Query 172 TGGASKLDGAINHVLQLCANLDTWC--IMSPQNCCPQLQEHSQQPCKQY--NLCHR--RS 225 +G AI+ + Q+ +L +++P Q + Y CH Sbjct 78 SGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGG 137 Query 226 QDPFGDLLKKLMDQIHDHLEMP-----ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVY 280 + ++ K M+ H + P L+R++ + Y + V L+ + ++Y Sbjct 138 TNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIY 197 Query 281 ALHLR-RYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELA 339 + + N +++ D L + F + + F Sbjct 198 DIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREE 257 Query 340 HLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIR 399 KL+ L + + + + +IF TR+ L + + D Sbjct 258 W---------KLDTLCDL----YETLTITQAVIFINTRRKVDWLT------EKMHARDFT 298 Query 400 AQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL 459 + G M Q+++ ++++F+ G+ +L+ T + G+D+ ++V+ Y L Sbjct 299 VSAMHG--------DMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP 350 Query 460 TNEISMVQ 467 TN + + Sbjct 351 TNRENYIH 358 Score = 51.7 bits (122), Expect = 1e-05, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 64/185 (35%), Gaps = 12/185 (6%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE 65 Q I+P ++G ++I +G GKT A + +E A + +VL L Q + Sbjct 59 QQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQK 118 Query 66 EFRRMLDGRWTVTTLS-GDMGPRAGFGHL-ARCHDLLICTAELLQMALTSPEEEEHVELT 123 + D G RA L +++ T + L ++ Sbjct 119 VVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRR----YLSPK 174 Query 124 VFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAIN 183 + V+DE D + + + Q+ QV+ L+A+ + + Sbjct 175 YIKMFVLDEA-----DEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMR 229 Query 184 HVLQL 188 +++ Sbjct 230 DPIRI 234 >sp|P60842|IF4A1_HUMAN Eukaryotic initiation factor 4A-I OS=Homo sapiens OX=9606 GN=EIF4A1 PE=1 SV=1 Length=406 Score = 99.5 bits (246), Expect = 5e-21, Method: Composition-based stats. Identities = 48/308 (16%), Positives = 108/308 (35%), Gaps = 39/308 (13%) Query 172 TGGASKLDGAINHVLQLCANLDTWC--IMSPQNCCPQLQEHSQQPCKQY--NLCHR--RS 225 +G AI+ + Q+ +L +++P Q + Y CH Sbjct 78 SGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGG 137 Query 226 QDPFGDLLKKLMDQIHDHLEMP-----ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVY 280 + ++ K M+ H + P L+R++ + Y + V L+ + ++Y Sbjct 138 TNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIY 197 Query 281 ALHLR-RYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELA 339 + + N +++ D L + F + + F Sbjct 198 DIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREE 257 Query 340 HLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIR 399 KL+ L + + + + +IF TR+ L + + D Sbjct 258 W---------KLDTLCDL----YETLTITQAVIFINTRRKVDWLT------EKMHARDFT 298 Query 400 AQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL 459 + G M Q+++ ++++F+ G+ +L+ T + G+D+ ++V+ Y L Sbjct 299 VSAMHG--------DMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP 350 Query 460 TNEISMVQ 467 TN + + Sbjct 351 TNRENYIH 358 Score = 51.7 bits (122), Expect = 1e-05, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 64/185 (35%), Gaps = 12/185 (6%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE 65 Q I+P ++G ++I +G GKT A + +E A + +VL L Q + Sbjct 59 QQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQK 118 Query 66 EFRRMLDGRWTVTTLS-GDMGPRAGFGHL-ARCHDLLICTAELLQMALTSPEEEEHVELT 123 + D G RA L +++ T + L ++ Sbjct 119 VVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRR----YLSPK 174 Query 124 VFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAIN 183 + V+DE D + + + Q+ QV+ L+A+ + + Sbjct 175 YIKMFVLDEA-----DEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMR 229 Query 184 HVLQL 188 +++ Sbjct 230 DPIRI 234 >sp|Q3SZ54|IF4A1_BOVIN Eukaryotic initiation factor 4A-I OS=Bos taurus OX=9913 GN=EIF4A1 PE=2 SV=1 Length=406 Score = 99.5 bits (246), Expect = 5e-21, Method: Composition-based stats. Identities = 48/308 (16%), Positives = 108/308 (35%), Gaps = 39/308 (13%) Query 172 TGGASKLDGAINHVLQLCANLDTWC--IMSPQNCCPQLQEHSQQPCKQY--NLCHR--RS 225 +G AI+ + Q+ +L +++P Q + Y CH Sbjct 78 SGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGG 137 Query 226 QDPFGDLLKKLMDQIHDHLEMP-----ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVY 280 + ++ K M+ H + P L+R++ + Y + V L+ + ++Y Sbjct 138 TNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIY 197 Query 281 ALHLR-RYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELA 339 + + N +++ D L + F + + F Sbjct 198 DIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREE 257 Query 340 HLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIR 399 KL+ L + + + + +IF TR+ L + + D Sbjct 258 W---------KLDTLCDL----YETLTITQAVIFINTRRKVDWLT------EKMHARDFT 298 Query 400 AQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL 459 + G M Q+++ ++++F+ G+ +L+ T + G+D+ ++V+ Y L Sbjct 299 VSAMHG--------DMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP 350 Query 460 TNEISMVQ 467 TN + + Sbjct 351 TNRENYIH 358 Score = 51.7 bits (122), Expect = 1e-05, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 64/185 (35%), Gaps = 12/185 (6%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE 65 Q I+P ++G ++I +G GKT A + +E A + +VL L Q + Sbjct 59 QQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQK 118 Query 66 EFRRMLDGRWTVTTLS-GDMGPRAGFGHL-ARCHDLLICTAELLQMALTSPEEEEHVELT 123 + D G RA L +++ T + L ++ Sbjct 119 VVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRR----YLSPK 174 Query 124 VFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAIN 183 + V+DE D + + + Q+ QV+ L+A+ + + Sbjct 175 YIKMFVLDEA-----DEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMR 229 Query 184 HVLQL 188 +++ Sbjct 230 DPIRI 234 >sp|Q54TF8|DDX19_DICDI ATP-dependent RNA helicase ddx19 OS=Dictyostelium discoideum OX=44689 GN=helC PE=2 SV=1 Length=465 Score = 100 bits (248), Expect = 6e-21, Method: Composition-based stats. Identities = 30/145 (21%), Positives = 58/145 (40%), Gaps = 20/145 (14%) Query 357 ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT 416 IL + + + I+F T +A S+ Q + LL G +T Sbjct 297 ILSDIYGFISVGQSIVFVHTIATAKSV------HQKMVDEGHSVSLLYG-------KDLT 343 Query 417 QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL------TNEISMVQARG 470 ++ + I+ F+DG +L+ T+V G+DIP ++V+ Y + + + + G Sbjct 344 TEERFKQIKDFKDGKSKVLITTNVLARGIDIPQVSLVINYDVPLDEMGKPDPVHYLHRIG 403 Query 471 R-ARADQSVYAFVATEGSRELKREL 494 R R +S A + + + Sbjct 404 RVGRFGRSGVALSFVYDQQSTNKLM 428 Score = 44.4 bits (103), Expect = 0.003, Method: Composition-based stats. Identities = 17/120 (14%), Positives = 44/120 (37%), Gaps = 15/120 (13%) Query 18 KNIIIWLPTGAGKTRAAAYVAKRHLE-TVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWT 76 N+I +G GKT A ++ +++ + + + L Q E ++ Sbjct 109 NNLIAQSQSGTGKTAAFTLGMLNCVDPSINAPQAICISPTKELALQTFEVISKIGQFSNI 168 Query 77 VTTLSGDMGPRAGFGHLARC--HDLLICTA-ELLQMALTSPEEEEHVELTVFSLIVVDEC 133 L + + + ++I T ++L+ + + +++ +V+DE Sbjct 169 KPLLY------ISEIEVPKNVTNQVIIGTPGKILENVIKKQLSVKFLKM-----VVLDEA 217 >sp|A5A6N4|IF4A1_PANTR Eukaryotic initiation factor 4A-I OS=Pan troglodytes OX=9598 GN=EIF4A1 PE=2 SV=1 Length=406 Score = 99.5 bits (246), Expect = 6e-21, Method: Composition-based stats. Identities = 48/308 (16%), Positives = 108/308 (35%), Gaps = 39/308 (13%) Query 172 TGGASKLDGAINHVLQLCANLDTWC--IMSPQNCCPQLQEHSQQPCKQY--NLCHR--RS 225 +G AI+ + Q+ +L +++P Q + Y CH Sbjct 78 SGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGG 137 Query 226 QDPFGDLLKKLMDQIHDHLEMP-----ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVY 280 + ++ K M+ H + P L+R++ + Y + V L+ + ++Y Sbjct 138 TNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIY 197 Query 281 ALHLR-RYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELA 339 + + N +++ D L + F + + F Sbjct 198 DIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREE 257 Query 340 HLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIR 399 KL+ L + + + + +IF TR+ L + + D Sbjct 258 W---------KLDTLCDL----YETLTITQAVIFINTRRKVDWLT------EKMHARDFT 298 Query 400 AQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL 459 + G M Q+++ ++++F+ G+ +L+ T + G+D+ ++V+ Y L Sbjct 299 VSAMHG--------DMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP 350 Query 460 TNEISMVQ 467 TN + + Sbjct 351 TNRENYIH 358 Score = 51.7 bits (122), Expect = 1e-05, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 64/185 (35%), Gaps = 12/185 (6%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE 65 Q I+P ++G ++I +G GKT A + +E A + +VL L Q + Sbjct 59 QQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQK 118 Query 66 EFRRMLDGRWTVTTLS-GDMGPRAGFGHL-ARCHDLLICTAELLQMALTSPEEEEHVELT 123 + D G RA L +++ T + L ++ Sbjct 119 VVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRR----YLSPK 174 Query 124 VFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAIN 183 + V+DE D + + + Q+ QV+ L+A+ + + Sbjct 175 YIKMFVLDEA-----DEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMR 229 Query 184 HVLQL 188 +++ Sbjct 230 DPIRI 234 >sp|Q5R5F5|IF4A1_PONAB Eukaryotic initiation factor 4A-I OS=Pongo abelii OX=9601 GN=EIF4A1 PE=2 SV=1 Length=406 Score = 99.5 bits (246), Expect = 6e-21, Method: Composition-based stats. Identities = 48/308 (16%), Positives = 108/308 (35%), Gaps = 39/308 (13%) Query 172 TGGASKLDGAINHVLQLCANLDTWC--IMSPQNCCPQLQEHSQQPCKQY--NLCHR--RS 225 +G AI+ + Q+ +L +++P Q + Y CH Sbjct 78 SGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGG 137 Query 226 QDPFGDLLKKLMDQIHDHLEMP-----ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVY 280 + ++ K M+ H + P L+R++ + Y + V L+ + ++Y Sbjct 138 TNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIY 197 Query 281 ALHLR-RYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELA 339 + + N +++ D L + F + + F Sbjct 198 DIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREE 257 Query 340 HLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIR 399 KL+ L + + + + +IF TR+ L + + D Sbjct 258 W---------KLDTLCDL----YETLTITQAVIFINTRRKVDWLT------EKMHARDFT 298 Query 400 AQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL 459 + G M Q+++ ++++F+ G+ +L+ T + G+D+ ++V+ Y L Sbjct 299 VSAMHG--------DMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP 350 Query 460 TNEISMVQ 467 TN + + Sbjct 351 TNRENYIH 358 Score = 51.3 bits (121), Expect = 2e-05, Method: Composition-based stats. Identities = 31/185 (17%), Positives = 63/185 (34%), Gaps = 12/185 (6%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE 65 Q I+ ++G ++I +G GKT A + +E A + +VL L Q + Sbjct 59 QQRAILSCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQK 118 Query 66 EFRRMLDGRWTVTTLS-GDMGPRAGFGHL-ARCHDLLICTAELLQMALTSPEEEEHVELT 123 + D G RA L +++ T + L ++ Sbjct 119 VVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRR----YLSPK 174 Query 124 VFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAIN 183 + V+DE D + + + Q+ QV+ L+A+ + + Sbjct 175 YIKMFVLDEA-----DEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMR 229 Query 184 HVLQL 188 +++ Sbjct 230 DPIRI 234 >sp|Q6FKN8|DBP5_CANGA ATP-dependent RNA helicase DBP5 OS=Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DBP5 PE=3 SV=1 Length=504 Score = 100 bits (248), Expect = 7e-21, Method: Composition-based stats. Identities = 53/346 (15%), Positives = 112/346 (32%), Gaps = 33/346 (10%) Query 181 AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI 240 ++ V + C+ + Q E Q+ K + + + K+ + Sbjct 174 MLSRVDETQNVPQAICLAPSRELARQTLEVIQEMGKYTKITTQLIVPDSFEKNTKINANV 233 Query 241 H--DHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVR 298 + +L R+ Q+ ++ L EA + Q + ++++ L + Sbjct 234 VVGTPGTLLDLIRRKLIQLQNVKIFVLDEADNMLDKQGLGDQCIRVKKF---LPKDTQLV 290 Query 299 AVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKIL 358 A A + + V +R + + L + ++L Sbjct 291 LFSATFADAVKAYAQKVIPNANTLELQRN----EVNVKAIKQLYMDCND---EAHKYEVL 343 Query 359 QRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQR 418 + IIF + +A+ L L+ + G S + + Sbjct 344 CELYGLLTIGSSIIFVAKKDTANLLYGKLKHE--------------GHQVSILHSDLRTD 389 Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT------NEISMVQARGR- 471 ++ +I F++G +L+ T+V G+DIP ++VV Y L T + + V GR Sbjct 390 ERDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVVNYDLPTLPNGMPDYATYVHRIGRT 449 Query 472 ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAE 517 R ++ A + K + +E D+ E Sbjct 450 GRFGRTGVAISFVHDKKSFKILSAIQDYFKDIELTRVPTDDWDEVE 495 >sp|Q54Y81|DDX23_DICDI ATP-dependent RNA helicase ddx23 OS=Dictyostelium discoideum OX=44689 GN=helB2 PE=2 SV=1 Length=834 Score = 101 bits (251), Expect = 7e-21, Method: Composition-based stats. Identities = 28/150 (19%), Positives = 57/150 (38%), Gaps = 20/150 (13%) Query 347 ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA 406 EN K E L ++++ P IIF ++ + L++ + Sbjct 665 ENDKKEHLTQLIK----DGPPPPIIIFVNKKKHCDIIAPVLEECR--------------V 706 Query 407 GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV 466 + + +Q ++ ++ F+ +L+AT VA G+ + V+ + + N Sbjct 707 SYTILHSGRSQEQREAALEGFKKRKYEVLIATGVASRGIHVDGVTHVINFDIPKNIEDYT 766 Query 467 QARGR-ARADQSVYA-FVATEGSRELKREL 494 GR RA + A T+ E+ +L Sbjct 767 HRIGRTGRAGSAGLASSFITDKDVEIMYDL 796 Score = 57.1 bits (136), Expect = 5e-07, Method: Composition-based stats. Identities = 31/137 (23%), Positives = 55/137 (40%), Gaps = 14/137 (10%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVD---------GAKVVVLVNRV 57 Q + I +L G++I+ TG+GKT A ++ G +V+ Sbjct 440 QMQSIPISLTGRDILGIAETGSGKTCAFVIPMLIYISKQPRLTKDTEADGPYALVMAPTR 499 Query 58 HLVTQHGEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE 116 LV Q +E R + V +L G +++ +++I T L L E Sbjct 500 ELVQQIEKETRNFAQHFGFRVVSLVGGQSIEDQAYQVSKGCEIIIATPGRLNDCL----E 555 Query 117 EEHVELTVFSLIVVDEC 133 + ++ L + IV+DE Sbjct 556 KRYLVLNQCNYIVLDEA 572 >sp|Q9UHL0|DDX25_HUMAN ATP-dependent RNA helicase DDX25 OS=Homo sapiens OX=9606 GN=DDX25 PE=1 SV=2 Length=483 Score = 99.9 bits (247), Expect = 7e-21, Method: Composition-based stats. Identities = 36/181 (20%), Positives = 73/181 (40%), Gaps = 30/181 (17%) Query 347 ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA 406 E+ K + + L + S + IIF +TR++A L + + Q G Sbjct 320 EHRKDKY--QALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQD--------------GH 363 Query 407 GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL------T 460 S S +T + +IQ+F+DG +L+ T+V G+D+ +VV + L Sbjct 364 QVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEP 423 Query 461 NEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQ 519 + + + GR R + AF E +L + + +++++++ + Sbjct 424 DYETYLHRIGRTGRFGKKGLAFNMIEVDEL-------PSLMKIQDHFNSSIKQLNAEDMD 476 Query 520 A 520 Sbjct 477 E 477 Score = 48.6 bits (114), Expect = 1e-04, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 41/119 (34%), Gaps = 9/119 (8%) Query 18 KNIIIWLPTGAGKTRAAAYVAK---RHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGR 74 +N+I +G GKT A LE + + L L Q G +M Sbjct 137 QNLIAQSQSGTGKTAAFVLAMLSRVNALELFP--QCLCLAPTYELALQTGRVVEQMGKFC 194 Query 75 WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC 133 V + G R G ++I T + + + ++LT + V+DE Sbjct 195 VDVQVMYAIRGNRIPRGTDI-TKQIIIGTPGTVLD---WCFKLKLIDLTKIRVFVLDEA 249 >sp|Q8RXK6|RH8_ARATH DEAD-box ATP-dependent RNA helicase 8 OS=Arabidopsis thaliana OX=3702 GN=RH8 PE=2 SV=1 Length=505 Score = 100 bits (248), Expect = 7e-21, Method: Composition-based stats. Identities = 48/329 (15%), Positives = 104/329 (32%), Gaps = 24/329 (7%) Query 182 INHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIH 241 + + Q + I+ + Q + ++ K + + G LK + +++ Sbjct 190 LEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLKI--QVMVTTGGTSLKDDIMRLY 247 Query 242 DHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIH-DTVRAV 300 + + + + ++ V L + + L + ++ + + + L+ R + Sbjct 248 QPVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQI 307 Query 301 DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQR 360 +A ++ K + L + + + + E K+ L Sbjct 308 LMFSATFPVTVKDF--KDRFLTNPYVINLMDELTLKGITQFYAFVEERQKI----HCLNT 361 Query 361 QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ 420 FS + IIF + L + + +G M Q + Sbjct 362 LFSKLQINQSIIFCNSVNRVELLAKKITE--------------LGYSCFYIHAKMLQDHR 407 Query 421 QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVY 479 V F++G LV T + G+DI NVV+ + N + + GR R Sbjct 408 NRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGL 467 Query 480 AFVATEGSRELKRELINEALETLMEQAVA 508 A I + L T ++Q Sbjct 468 AVNLITYEDRFNLYRIEQELGTEIKQIPP 496 Score = 52.5 bits (124), Expect = 1e-05, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 54/131 (41%), Gaps = 10/131 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAY---VAKRHLETVDGAKVVVLVNRVHLVTQH 63 Q E I AL G++I+ G GKT AA+ V ++ + + + V++V L Q Sbjct 158 QEESIPIALTGRDILARAKNGTGKT--AAFCIPVLEKIDQDNNVIQAVIIVPTRELALQT 215 Query 64 GEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 + + + + V +G + L + LL+ T + ++ L Sbjct 216 SQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILD----LTKKGVCVL 271 Query 123 TVFSLIVVDEC 133 S++V+DE Sbjct 272 KDCSVLVMDEA 282 >sp|A1CYG5|DBP5_NEOFI ATP-dependent RNA helicase dbp5 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dbp5 PE=3 SV=1 Length=489 Score = 99.9 bits (247), Expect = 8e-21, Method: Composition-based stats. Identities = 33/195 (17%), Positives = 69/195 (35%), Gaps = 29/195 (15%) Query 352 EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ 411 E K L + + IIF +TR +A + + + G S Sbjct 306 EDKYKTLVQLYGLLTVGSSIIFVQTRAAAQEIEKRMTAE--------------GHTVVSL 351 Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT----------- 460 + + +I +F+ G +L+AT+V G+D+ ++V+ Y + Sbjct 352 TGERDPSVRDAIIDQFRRGEAKVLIATNVLARGIDVSTVSMVINYDIPELHQPSVPGRQA 411 Query 461 NEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQ 519 + + + GR R + + E E++N+ ++T + V D E + Sbjct 412 DFQTYLHRIGRTGRFGRVGVSISFVSNREE--WEMLNQ-IQTYFNCEIQRVDTKDWDEVE 468 Query 520 AKIRDLQQAALTKRA 534 I+ + + Sbjct 469 DIIKKTIKNSRANPK 483 >sp|Q5AJD0|DBP5_CANAL ATP-dependent RNA helicase DBP5 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DBP5 PE=3 SV=2 Length=540 Score = 100 bits (248), Expect = 8e-21, Method: Composition-based stats. Identities = 41/240 (17%), Positives = 80/240 (33%), Gaps = 34/240 (14%) Query 294 HDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG-------- 345 +R AL T++ RL+ + + + L G Sbjct 310 DQAIRVKKALPRGVQLVLFSATFPTEVREYAERLVPDANSLELKQEELNVDGIKQLYMDC 369 Query 346 -PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI 404 E K E+L ++ + IIF +++A L ++++ Sbjct 370 RSEQHKFEVLCEL----YGLLTIGSSIIFVEKKETADVLYGKMKKE-------------- 411 Query 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT---- 460 G S + D+ +I F++G +L+ T+V G+DI ++VV Y + T Sbjct 412 GHTVSVLHGGLDNTDRDRLIDDFREGRSKVLITTNVLARGIDIASVSMVVNYDMPTDKYG 471 Query 461 --NEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAE 517 + + + GR R + + R + +A +E D+ E Sbjct 472 KPDPSTYLHRIGRTGRFGRVGVSISFIHDRRSYDILMAIKAYFGNVEMTRVPTDDWDEVE 531 >sp|A4R715|DHH1_PYRO7 ATP-dependent RNA helicase DHH1 OS=Pyricularia oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 GN=DHH1 PE=3 SV=2 Length=535 Score = 100 bits (248), Expect = 8e-21, Method: Composition-based stats. Identities = 44/254 (17%), Positives = 82/254 (32%), Gaps = 22/254 (9%) Query 230 GDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND 289 G L+ + ++ D + + + + + V LSE + ++ ++ + Sbjct 152 GTTLRDDILRLQDPVHIVVGTPGRILDLAGKNVADLSECPMFIMDEADKLLSIEFTPVIE 211 Query 290 ALL-IHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPEN 348 LL H R V +A +E K E + + + + E Sbjct 212 QLLQFHPKDRQVMLFSATFPISVKEFSDKNMTNPYE--INLMDELTLRGITQYYAFVEEK 269 Query 349 PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN 408 K+ L FS + IIF + L + + +G Sbjct 270 QKV----HCLNTLFSKLQINQSIIFCNSTNRVELLAKKITE--------------LGYSC 311 Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 M Q+ + V F++G LV + + G+DI NVV+ + N + + Sbjct 312 FYSHAKMQQQARNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHR 371 Query 469 RGR-ARADQSVYAF 481 GR R A Sbjct 372 IGRSGRYGHLGLAI 385 Score = 49.8 bits (117), Expect = 6e-05, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 46/129 (36%), Gaps = 6/129 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE 65 Q E I AL G++I+ G GKT A A + + ++LV L Q + Sbjct 74 QEESIPVALTGRDILARAKNGTGKTAAFVVPALETINPKVSKIQCLILVPTRELAMQTSQ 133 Query 66 EFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 + + V +G R L +++ T + + +L+ Sbjct 134 VCKTLGKHLGINVMVTTGGTTLRDDILRLQDPVHIVVGTPGRILD----LAGKNVADLSE 189 Query 125 FSLIVVDEC 133 + ++DE Sbjct 190 CPMFIMDEA 198 >sp|Q0CBE1|DHH1_ASPTN ATP-dependent RNA helicase dhh1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=dhh1 PE=3 SV=1 Length=509 Score = 99.9 bits (247), Expect = 8e-21, Method: Composition-based stats. Identities = 51/326 (16%), Positives = 94/326 (29%), Gaps = 30/326 (9%) Query 234 KKLMDQI---HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDA 290 LMD I +D + + + + + V LSE + ++ + + Sbjct 153 TGLMDDIIRLNDAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQ 212 Query 291 LL-IHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENP 349 LL H R V +A + K + + + + + + E Sbjct 213 LLSFHPKDRQVMLFSATFPLIVKSF--KDKHMRNPYEINLMDELTLRGITQYYAFVEEKQ 270 Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ L FS + IIF + L + + +G Sbjct 271 KV----HCLNTLFSKLQINQSIIFCNSTNRVELLAKKITE--------------LGYSCF 312 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 M Q+ + V F++G LV + + G+DI NVV+ + N + + Sbjct 313 YSHARMLQQHRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRI 372 Query 470 GR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM-----DQAEYQAKIR 523 GR R A I + L T ++ + K I Sbjct 373 GRSGRFGHLGLAINLINWDDRFNLYKIEQELGTEIQPIPQNIDKKLYVYDSPDTIPRPIS 432 Query 524 DLQQAALTKRAAQAAQRENQRQQFPV 549 + Q ++R Sbjct 433 NPSQPPQATGMPSGQHIGDRRHNNHP 458 Score = 51.0 bits (120), Expect = 3e-05, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 46/131 (35%), Gaps = 10/131 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA---KVVVLVNRVHLVTQH 63 Q E I AL G++I+ G GKT AA+V + + ++LV L Q Sbjct 74 QEETIPVALTGRDILARAKNGTGKT--AAFVIPTLERINPKSTKTQALILVPTRELALQT 131 Query 64 GEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 + + V +G G L +L+ T + + +L Sbjct 132 SHVCKTLGKHLGINVMVTTGGTGLMDDIIRLNDAVHILVGTPGRVLD----LASKGVADL 187 Query 123 TVFSLIVVDEC 133 + V+DE Sbjct 188 SECPTFVMDEA 198 >sp|Q6BML1|PRP5_DEBHA Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=PRP5 PE=3 SV=2 Length=913 Score = 101 bits (251), Expect = 9e-21, Method: Composition-based stats. Identities = 70/448 (16%), Positives = 142/448 (32%), Gaps = 84/448 (19%) Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQP-CKQYNLCHRRSQD 227 SP + A + AI + T + P L+ QP K+ + Sbjct 339 SPSSIQAQAI-PAIMSGRDIIGVAKTGSGKTLSFVLPLLRHIQDQPPLKKGDGPIGLIMT 397 Query 228 PFGDLLKKLMDQIHDHLEMPELSRK--FGTQMYEQQVVKLSEAAALAGLQEQRVYAL--- 282 P +L ++ +++ + +S FG E Q+ +L + A + R+ L Sbjct 398 PTRELALQIHKELNHFTKKLNISSCCCFGGSSIESQIAELKKGAQIIVGTPGRIIDLLAA 457 Query 283 -----HLRRYNDALLIHDTVRAVD-------------------ALAALQDFYHREHVTKT 318 + L++ + R D + F + + Sbjct 458 NSGRVTNLQRVTYLVLDEADRMFDMGFEPQVTKVFTRVRPDRQTVLFSATFPRKMELLAK 517 Query 319 QILCAERRLLAL--------FDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRG 370 +IL ++ + + E K L L + Sbjct 518 KILDNPMEIVVGGISVVASEITQKVELFENEDDKSLEEAKFSKLLSTLNDYGDKDAECKI 577 Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 +IF + +A LL+ L ++ + Q D++ I++F Sbjct 578 LIFVEKQIAADELLVKLLTEKYPCL--------------AIHGGKDQIDRKHAIREFSSS 623 Query 431 T--LNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGS 487 +N+L+ATS+A GLD+ N+V+ Y ++ V GR RA + A Sbjct 624 NSGVNILIATSIAARGLDVKGLNLVINYEAASHMEDYVHRVGRTGRAGRKGTAITFVSSK 683 Query 488 R--------------ELKRELINEALETLMEQAVAAVQKMDQ--------------AEYQ 519 + ++ + IN L + + + V+ + E + Sbjct 684 QGRAITDLVKAMRLSKVSEDEINPRLIEISTKFLEGVKSGKEKYNFGFSGKGLDNLQEIR 743 Query 520 AKIRDLQQAALTKRAAQAAQRENQRQQF 547 RDL++ + + + N+++Q Sbjct 744 ESNRDLERKVYGEENDSSTFKANEKKQN 771 Score = 59.0 bits (141), Expect = 1e-07, Method: Composition-based stats. Identities = 43/262 (16%), Positives = 86/262 (33%), Gaps = 23/262 (9%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKV------VVLVNRVHLV 60 Q + I + G++II TG+GKT + RH++ K +++ L Sbjct 344 QAQAIPAIMSGRDIIGVAKTGSGKTLSFVLPLLRHIQDQPPLKKGDGPIGLIMTPTRELA 403 Query 61 TQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 Q +E + G + L + +++ T + L + Sbjct 404 LQIHKELNHFTKKLNISSCCCFGGSSIESQIAELKKGAQIIVGTPGRIIDLLAANSGR-V 462 Query 120 VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQ-----PLPQVLGLTA------ 168 L + +V+DE + + ++ R P+ + L A Sbjct 463 TNLQRVTYLVLDEADRMFDMGFEPQVTKVFTRVRPDRQTVLFSATFPRKMELLAKKILDN 522 Query 169 --SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQ--NCCPQLQEHSQQPCKQYNLCHRR 224 GG S + I ++L N D + + L ++ + + L Sbjct 523 PMEIVVGGISVVASEITQKVELFENEDDKSLEEAKFSKLLSTLNDYGDKDAECKILIFVE 582 Query 225 SQDPFGDLLKKLMDQIHDHLEM 246 Q +LL KL+ + + L + Sbjct 583 KQIAADELLVKLLTEKYPCLAI 604 >sp|Q1EB85|DBP5_COCIM ATP-dependent RNA helicase DBP5 OS=Coccidioides immitis (strain RS) OX=246410 GN=DBP5 PE=3 SV=1 Length=495 Score = 99.9 bits (247), Expect = 9e-21, Method: Composition-based stats. Identities = 31/175 (18%), Positives = 65/175 (37%), Gaps = 29/175 (17%) Query 352 EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ 411 E +IL + + IIF +TR SA + + + G S Sbjct 319 EHKYEILVKFYGLLTIGSSIIFVKTRASAAEIERRMVAE--------------GHTVVSL 364 Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT----------- 460 + + + + E+I +F++GT +L+ T+V G+D+ ++V+ Y + Sbjct 365 TGGIEGQKRDEIIDRFRNGTAKVLITTNVLARGIDVSTVSMVINYDIPELHLPGAARRMA 424 Query 461 NEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMD 514 + + + GR R + A E + + + ++ + V D Sbjct 425 DAQTYLHRIGRTGRFGRVGVAVSFVSNQEEWQ---MLQDIQKYFSTNIERVDTRD 476 Score = 45.9 bits (107), Expect = 0.001, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 39/122 (32%), Gaps = 16/122 (13%) Query 19 NIIIWLPTGAGKTRAAAYVAKRHLETVDGA----KVVVLVNRVHLVTQHGEEFR---RML 71 N+I +G GKT A LE + +VL L Q + + Sbjct 133 NMIAQSQSGTGKTAAFVLNILSRLELTPEKQKSPQALVLAPSRELARQIVGVIQAMGTFV 192 Query 72 DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVD 131 +G + T + +M +++ T +Q + ++V+D Sbjct 193 EGLFVATAVPMEMNRNQRVEA-----SIVVGTPGTVQDLIKKRLFNT----QHLRVLVLD 243 Query 132 EC 133 E Sbjct 244 EA 245 >sp|Q9VCU9|DCR1_DROME Endoribonuclease Dcr-1 OS=Drosophila melanogaster OX=7227 GN=Dcr-1 PE=1 SV=1 Length=2249 Score = 101 bits (252), Expect = 9e-21, Method: Composition-based stats. Identities = 35/126 (28%), Positives = 60/126 (48%), Gaps = 6/126 (5%) Query 370 GIIFTRTRQSAHSLLLWLQQ--QQGLQTVDIRAQLLIGA----GNSSQSTHMTQRDQQEV 423 +I+ +A L L + ++ +R Q + + R Q+EV Sbjct 495 ALIYCNQNHTARVLFELLAEISRRDPDLKFLRCQYTTDRVADPTTEPKEAELEHRRQEEV 554 Query 424 IQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFVA 483 +++F+ N+L+ TSV EEG+D+P CN+VVR+ T S VQ +GRARA + + + Sbjct 555 LKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPTTYRSYVQCKGRARAAPAYHVILV 614 Query 484 TEGSRE 489 + Sbjct 615 APSYKS 620 Score = 76.8 bits (187), Expect = 5e-13, Method: Composition-based stats. Identities = 69/401 (17%), Positives = 127/401 (32%), Gaps = 62/401 (15%) Query 1 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLET-VDGAKVVVLVNRVHL 59 R +Q E++ A E +N II L + K A + + +V V+L Sbjct 15 FTPRDFQVELLATAYE-RNTIICLGHRSSKEFIALKLLQELSRRARRHGRV-----SVYL 68 Query 60 VTQHGEEFRRMLDGRWTVTTLSGDMGPRAG---------FGHLARCHDLLICTAELLQMA 110 E + T L+ R F H + + I E Sbjct 69 ----SCEVGTSTEPCSIYTMLTHLTDLRVWQEQPDMQIPFDHCWTDYHVSILRPEGFLYL 124 Query 111 LTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQY-LELKLQRAQPLPQVLGLTAS 169 L + E + L+ LIV+++CH + VY I + + P++LGL A Sbjct 125 LETRE----LLLSSVELIVLEDCHDSA---VYQRIRPLFENHIMPAPPADRPRILGL-AG 176 Query 170 PGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPF 229 P +L + L ++ C + + + + +P + C D Sbjct 177 PLHSAGCELQQLSAMLATLEQSV--LCQIETASDIVTVLRYCSRPHEYIVQCAPFEMDEL 234 Query 230 GDLLKK--------LMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAAL---------- 271 +L L+D +D E+ + +F ++ + K+ + Sbjct 235 SLVLADVLNTHKSFLLDHRYDPYEI-YGTDQFMDELKDIPDPKVDPLNVINSLLVVLHEM 293 Query 272 AGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAER--RLLA 329 QR A H + N+ L V+ L + + LC R L Sbjct 294 GPWCTQRA-AHHFYQCNEKL----KVKTPHERHYLLYCLVSTALIQLYSLCEHAFHRHLG 348 Query 330 LFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRG 370 D + + + +PK+ L + L+ + Sbjct 349 SGSDSRQTIERYS-----SPKVRRLLQTLRCFKPEEVHTQA 384 >sp|Q10MH8|RH24_ORYSJ DEAD-box ATP-dependent RNA helicase 24 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0308500 PE=2 SV=1 Length=770 Score = 101 bits (250), Expect = 9e-21, Method: Composition-based stats. Identities = 45/266 (17%), Positives = 93/266 (35%), Gaps = 19/266 (7%) Query 237 MDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDT 296 ++ E+ + + + + +K+ A L + R++ L +++ Sbjct 336 FKELKAGCEIVIATPGRLIDLLKMKALKMFRATYLVLDEADRMFDLGFEPQIRSIVGQIR 395 Query 297 VRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEK 356 L + Y E + + + R + ++ + P + E + Sbjct 396 PDRQTLLFSATMPYKVERLAREILTDPIRVTVGQVGSANEDIKQVVNVLPSD--AEKMPW 453 Query 357 ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT 416 +L++ + ++F + + L Q+ R L G Sbjct 454 LLEKLPGMIDDGDVLVFAAKKARVDEIESQLNQR------GFRIAALHG--------DKD 499 Query 417 QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARAD 475 Q + E +QKF+ G ++LVAT VA GLDI VV + + + GR RA Sbjct 500 QASRMETLQKFKSGVYHVLVATDVAARGLDIKSIKTVVNFDIAKEMDMHIHRIGRTGRAG 559 Query 476 QS-VYAF-VATEGSRELKRELINEAL 499 A+ + T+ EL++ + Sbjct 560 DKDGTAYTLITQKEVRFAGELVHCLI 585 Score = 52.5 bits (124), Expect = 1e-05, Method: Composition-based stats. Identities = 31/136 (23%), Positives = 50/136 (37%), Gaps = 11/136 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRH------LETVDGAKVVVLVNRVHLV 60 Q + + L G++II TG+GKT A H LE +G VV L Sbjct 246 QCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELEKEEGPIGVVCAPTRELA 305 Query 61 TQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 Q E ++ V + G + F L +++I T L L Sbjct 306 HQIYLEAKKFAKPYNLRVAAVYGGVSKFDQFKELKAGCEIVIATPGRLIDLLKMKA---- 361 Query 120 VELTVFSLIVVDECHH 135 +++ + +V+DE Sbjct 362 LKMFRATYLVLDEADR 377 >sp|A6QUM7|DBP10_AJECN ATP-dependent RNA helicase DBP10 OS=Ajellomyces capsulatus (strain NAm1 / WU24) OX=2059318 GN=DBP10 PE=3 SV=1 Length=900 Score = 101 bits (250), Expect = 1e-20, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 64/180 (36%), Gaps = 15/180 (8%) Query 309 FYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSP 368 F + + +L ++ + L + K + E S Sbjct 306 FTVKSSEKEGALLHVLHEVIKIPTGETEALKRAKEEVKHSKKRKRSEVTSNSHKESPTEH 365 Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 IIFT T+ L L+ G S + Q ++ +Q F+ Sbjct 366 STIIFTATKHHVDYLTSILRTS--------------GFAVSYAYGSLDQTARKIEVQNFR 411 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGS 487 DG ++LV T VA G+DIP + V+ Y + V GR ARA ++ +++ S Sbjct 412 DGITHILVVTDVAARGIDIPILSNVINYDFPSQPKIFVHRVGRTARAGKTGWSYSLIRES 471 Score = 50.6 bits (119), Expect = 5e-05, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 49/125 (39%), Gaps = 8/125 (6%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVD---GAKVVVLVNRVHLVTQHGEEFRRML 71 L+ ++++ TG+GKT A L++ G++ ++L L Q + + + Sbjct 121 LDDQDVVGMARTGSGKTAAFVIPMIEKLKSHSAKFGSRALILSPSRELALQTLKVVKELG 180 Query 72 DG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV 130 G L G F ++A D++I T + E ++L+ +V Sbjct 181 RGTDLKSVLLVGGDSLEEQFEYMASNPDIIIATPGRFLH----LKVEMSLDLSSIRYVVF 236 Query 131 DECHH 135 DE Sbjct 237 DEADR 241 >sp|Q6C024|PRP28_YARLI Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=PRP28 PE=3 SV=1 Length=575 Score = 100 bits (248), Expect = 1e-20, Method: Composition-based stats. Identities = 34/174 (20%), Positives = 67/174 (39%), Gaps = 24/174 (14%) Query 352 EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ 411 + ++L P ++F ++ ++ L R ++ G Sbjct 416 KRKRRLLDIISKRQYRPPIVVFLNYKRDCEAVSDAL------VAAGWRTAIIHG------ 463 Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR-- 469 Q +++ +Q + G +++LVAT VA GLDIP+ ++VV + + N S Sbjct 464 --GKQQEQREQAVQHLKRGAVDVLVATDVAGRGLDIPNVSLVVNFQMANNIESYTHRIGR 521 Query 470 -GRARADQSVYAFVATEGS-------RELKRELINEALETLMEQAVAAVQKMDQ 515 GRA + F+ E + + R + + L A ++K+ Q Sbjct 522 TGRAGKRGTAVTFLGQEDDDVLFELKQMISRSEASPNNQELSRHPAARMKKLQQ 575 Score = 51.7 bits (122), Expect = 2e-05, Method: Composition-based stats. Identities = 26/140 (19%), Positives = 50/140 (36%), Gaps = 16/140 (11%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYV-----AKRHLETVDGAKV-----VVLVNR 56 Q I AL +++I TG+GKT A+ + + + +KV ++L Sbjct 190 QRAAIPIALGIRDVIGVAETGSGKT-ASFLIPLISYICELPKLDERSKVNGPYGLILAPT 248 Query 57 VHLVTQ-HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE 115 L Q E + + V ++ G + + +L++ T L + Sbjct 249 RELAMQIKDEAVKFCAPLGFKVVSVVGGYSAQEQALAVQEGAELIVATPGRLLDVIDRRL 308 Query 116 EEEHVELTVFSLIVVDECHH 135 + L +V+DE Sbjct 309 ----LVLNQCCYVVMDEADR 324 >sp|P54475|CSHB_BACSU DEAD-box ATP-dependent RNA helicase CshB OS=Bacillus subtilis (strain 168) OX=224308 GN=cshB PE=1 SV=1 Length=438 Score = 99.1 bits (245), Expect = 1e-20, Method: Composition-based stats. Identities = 56/381 (15%), Positives = 130/381 (34%), Gaps = 28/381 (7%) Query 128 IVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQ 187 ++D H I + + L++ V+G + + + L +N + Sbjct 14 FIIDAVHRLGFYEP-TDIQKRLIPAVLKKES----VIGQSQTGTGKTHAYLLPLLNKIDP 68 Query 188 LCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFG-DLLKKLMDQIHDHLEM 246 + + Q+ + + + + RS+ G +K +D++ + Sbjct 69 AKDVVQVVITAPTRELANQIYQEALKITQGEEGSQIRSKCFIGGTDKQKSIDKLKIQPHL 128 Query 247 PELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAAL 306 + + ++Q + + +A +L + + + D + + + Sbjct 129 VVGTPGRIADLIKEQALSVHKAESLVIDEADLMLDMGFLADVDYIGSRMPEDLQMLVFSA 188 Query 307 QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSN 366 + K + + + ++ H+ K ++L I+ N Sbjct 189 TIPEKLKPFLKKYMENPKYAHVEPKQVTAAKIEHILIPSKHRDKDKLLFDIMSHL----N 244 Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 GI+F T+ +A + +L + G +T R++++V+++ Sbjct 245 PYLGIVFANTKNTADHIAQYLTGK--------------GMKIGLLHGGLTPRERKKVMKQ 290 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFV--- 482 D ++AT +A G+DI + V+ Y L + V GR ARA S A Sbjct 291 INDLEFTYIIATDLAARGIDIKGVSHVINYELPDDLDFYVHRVGRTARAGSSGQAMTIYE 350 Query 483 ATEGSRELKRELINEALETLM 503 T+ ++ E + E L Sbjct 351 LTDEDALVRLEKMGIEFEYLE 371 Score = 51.7 bits (122), Expect = 2e-05, Method: Composition-based stats. Identities = 27/137 (20%), Positives = 47/137 (34%), Gaps = 9/137 (7%) Query 2 ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLET-VDGAKVVVLVNRVHLV 60 E Q +I L+ +++I TG GKT A ++ D +VV+ L Sbjct 26 EPTDIQKRLIPAVLKKESVIGQSQTGTGKTHAYLLPLLNKIDPAKDVVQVVITAPTRELA 85 Query 61 TQHGEEFRRMLDGRWTVTTLS----GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE 116 Q +E ++ G S G + L L++ T + + Sbjct 86 NQIYQEALKITQGEEGSQIRSKCFIGGTDKQKSIDKLKIQPHLVVGTPGRIADLIKEQAL 145 Query 117 EEHVELTVFSLIVVDEC 133 H + +V+DE Sbjct 146 SVHKAES----LVIDEA 158 >sp|Q2U5A2|DHH1_ASPOR ATP-dependent RNA helicase dhh1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=dhh1 PE=3 SV=1 Length=511 Score = 99.9 bits (247), Expect = 1e-20, Method: Composition-based stats. Identities = 55/327 (17%), Positives = 97/327 (30%), Gaps = 34/327 (10%) Query 234 KKLMDQI---HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDA 290 LMD I +D + + + + + V LSE + ++ + + Sbjct 153 TGLMDDIIRLNDAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQ 212 Query 291 LL-IHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENP 349 LL H R V +A + K + + + + + + E Sbjct 213 LLSFHPKDRQVMLFSATFPLIVKSF--KDKHMRNPYEINLMDELTLRGITQYYAFVEEKQ 270 Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ L FS + IIF + L + + +G Sbjct 271 KV----HCLNTLFSKLQINQSIIFCNSTNRVELLAKKITE--------------LGYSCF 312 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 M Q+ + V F++G LV + + G+DI NVV+ + N + + Sbjct 313 YSHARMLQQHRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRI 372 Query 470 GR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM-----DQAEYQAKIR 523 GR R A I + L T ++ + K I Sbjct 373 GRSGRFGHLGLAINLINWDDRFNLYKIEQELGTEIQPIPQNIDKKLYVYESPETIPRPIA 432 Query 524 DLQQAALTKRAAQAA----QRENQRQQ 546 + QA L Q +R N Sbjct 433 NASQAQLATSGNQTQNMGERRHNNHSN 459 Score = 50.2 bits (118), Expect = 4e-05, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 46/131 (35%), Gaps = 10/131 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA---KVVVLVNRVHLVTQH 63 Q E I AL G++I+ G GKT AA+V + + ++LV L Q Sbjct 74 QEETIPVALTGRDILARAKNGTGKT--AAFVIPTLERINPKSTKTQALILVPTRELALQT 131 Query 64 GEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 + + V +G G L +L+ T + + +L Sbjct 132 SHVCKTLGKHLGINVMVTTGGTGLMDDIIRLNDAVHILVGTPGRVLD----LASKGVADL 187 Query 123 TVFSLIVVDEC 133 + V+DE Sbjct 188 SECPTFVMDEA 198 >sp|Q7S5D9|DHH1_NEUCR ATP-dependent RNA helicase dhh1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=drh-10 PE=3 SV=3 Length=569 Score = 99.9 bits (247), Expect = 1e-20, Method: Composition-based stats. Identities = 50/286 (17%), Positives = 87/286 (30%), Gaps = 26/286 (9%) Query 229 FGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN 288 D + +L D +H + P +QV LSE + ++ + Sbjct 153 LRDDIVRLQDPVHIVVGTPGRILDLAG----KQVADLSECPMFIMDEADKLLSQEFTPVI 208 Query 289 DALL-IHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPE 347 + LL H R V +A ++ K E + + + + E Sbjct 209 EQLLQFHPKDRQVMLFSATFPLSVKDFSDKNMTSPYE--INLMDELTLRGITQYYAFVEE 266 Query 348 NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG 407 K+ L FS + IIF + L + + +G Sbjct 267 KQKV----HCLNTLFSKLQINQSIIFCNSTNRVELLAKKITE--------------LGYS 308 Query 408 NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 M Q+ + V F++G LV + + G+DI NVV+ + N + + Sbjct 309 CFYSHAKMAQQARNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLH 368 Query 468 ARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQK 512 GR R A I L T ++ + K Sbjct 369 RIGRSGRYGHLGLAINLINWDDRFNLYNIERDLGTEIQPIPQTIDK 414 Score = 54.4 bits (129), Expect = 2e-06, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 52/131 (40%), Gaps = 10/131 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG-AKV--VVLVNRVHLVTQH 63 Q E I AL G++I+ G GKT AA+V + +K+ ++LV L Q Sbjct 72 QEEAIPVALTGRDILARAKNGTGKT--AAFVIPALNKINPKVSKIQCLILVPTRELAMQT 129 Query 64 GEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 + + + V +G G R L +++ T + ++ +L Sbjct 130 SQVCKTLGKHLGINVMVTTGGTGLRDDIVRLQDPVHIVVGTPGRILD----LAGKQVADL 185 Query 123 TVFSLIVVDEC 133 + + ++DE Sbjct 186 SECPMFIMDEA 196 >sp|Q0CGJ9|SUB2_ASPTN ATP-dependent RNA helicase sub2 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=sub2 PE=3 SV=1 Length=438 Score = 99.1 bits (245), Expect = 1e-20, Method: Composition-based stats. Identities = 50/335 (15%), Positives = 112/335 (33%), Gaps = 51/335 (15%) Query 200 PQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYE 259 P C + H+++ Q + R D+ + + E+ + Y Sbjct 121 PGECSVLVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDIEVLSN--KESYP 178 Query 260 QQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQD----------- 308 VV L R A ++ + + +D + +D Sbjct 179 NIVV-----GTPGRLNALVREKKLSLRNVKAFVLDECDKMLDQIDMRRDVQEIFRATPAD 233 Query 309 ---FYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG--------PENPKLEMLEKI 357 +++ ++ + + ++ L HG E+ K L + Sbjct 234 KQVMMFSATLSQEIRPICKKFMRNPLEVYVDDDTKLTLHGLQQYYIKLSESEKNRKLNDL 293 Query 358 LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ 417 L + IIF ++ Q A+ L L++ + + ++Q Sbjct 294 LDNL----EFNQVIIFVKSTQRANELDKLLRECNFPSI--------------AVHSGVSQ 335 Query 418 RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQS 477 ++ + ++F++ + VAT V G+DI N+ + Y L + S + GRA + Sbjct 336 EERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGT 395 Query 478 ---VYAFVATEGSRELKRELINEALETLMEQAVAA 509 +FV++E ++ ++ I + E + + Sbjct 396 KGLSISFVSSEDDEKVLKD-IEKRFEVALPEYPEG 429 Score = 47.5 bits (111), Expect = 3e-04, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 45/128 (35%), Gaps = 14/128 (11%) Query 14 ALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG-AKVVVLVNRVHLVTQ---HGEEFRR 69 A+ +++ +G GKT LE V G V+V+ + L Q F + Sbjct 89 AILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQIKNEYARFSK 148 Query 70 MLDGRWTVTTLSGDMGPRAGFGHLARCHD----LLICTAELLQMALTSPEEEEHVELTVF 125 L T G P + + +++ T L AL ++ + L Sbjct 149 YLPDVKTAVFYGG--TPIQKDIEVLSNKESYPNIVVGTPGRL-NALVREKK---LSLRNV 202 Query 126 SLIVVDEC 133 V+DEC Sbjct 203 KAFVLDEC 210 >sp|Q4IPI1|ROK1_GIBZE ATP-dependent RNA helicase ROK1 OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=ROK1 PE=3 SV=1 Length=693 Score = 100 bits (249), Expect = 1e-20, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 86/223 (39%), Gaps = 29/223 (13%) Query 347 ENPKLEMLEKILQRQFSSSNSPRG----IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL 402 E KL L ++L S + P ++FT+T A +L LQ L+ Sbjct 448 EQGKLLALRQLLHPTASDDSGPPLRPPFLVFTQTIDRATALHEELQYDIPLEAGG----- 502 Query 403 LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE 462 A ++ + +T + +++KF+ G + +L+ T V G+D N VV Y + + Sbjct 503 --AARIAALHSGLTDSARSSIMRKFRAGDIWILITTDVLARGVDFAGVNGVVNYDVPGSS 560 Query 463 ISMVQARGR----ARADQSVYAFVATEG--------------SRELKRELINEALETLME 504 V GR R F E ++ + ++ + Sbjct 561 AGYVHRAGRTGRAGREGGIAVTFYTKEDIPFVKMVANVIAVSEKQAGKTGDEAGVQKWLL 620 Query 505 QAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQF 547 A+ V+K D+ + + + + +++ + + + + E +R+ Sbjct 621 DALPNVRKADRKKLKERGNEARRSGVKSKISSKSGYERRRENN 663 Score = 44.4 bits (103), Expect = 0.004, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 49/169 (29%), Gaps = 48/169 (28%) Query 12 MPALEGKNII-------IWLPTGAGKTRAAAYV--AKRHLETVDGA--------KVVVLV 54 AL+ ++ + PTG+GKT + + L + V++ Sbjct 197 QAALKDEDGLDGGVDFLAIAPTGSGKT-ISFLIPAINNILRRRSEENTGNIHELEAVIVA 255 Query 55 NRVHLVTQHGEEFRRMLDGR-------WTVTTLSGDMGPRAGFGHLARCH---------- 97 LV Q E +++ G T LS D A Sbjct 256 PTRELVHQIVSEGQKLCKGTGLKVVSMKKHTHLSADQVDMAEDSSEDEEDKESESEDDDK 315 Query 98 -------------DLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC 133 D+L+ T LL LTS L +++DE Sbjct 316 KPSDDKPKQITTPDILVTTPFLLFKFLTSGPPSTQKVLPTVRDLILDEA 364 >sp|A5DIX5|ROK1_PICGU ATP-dependent RNA helicase ROK1 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=ROK1 PE=3 SV=2 Length=537 Score = 99.9 bits (247), Expect = 1e-20, Method: Composition-based stats. Identities = 40/227 (18%), Positives = 78/227 (34%), Gaps = 36/227 (16%) Query 339 AHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI 398 L G E KL + +++Q+ P IIF ++ A +L Sbjct 327 QKLVFTGNEEGKLLAIRQMVQQ---GEFKPPIIIFLQSIPRAKAL--------------F 369 Query 399 RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL 458 + T + ++E I++F++G +L+ T V G+D N+V+ Y + Sbjct 370 HELIYDKLNVEVIHAERTPKQREEAIRRFKNGDAWVLITTDVLARGVDFKGVNLVINYDV 429 Query 459 LTNEISMVQARGRARADQS--VYAFVATEGSRELKRELIN---------------EALET 501 + V GR T+ + + ++N E++E Sbjct 430 PQTSQAYVHRIGRTGRGGKEGKAVTFFTKEDKLAIKPVLNVMKQSGCHEGYSEWMESMEK 489 Query 502 LMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFP 548 L ++ Q + KI + Q KR + E +++ Sbjct 490 LTKK--EKQQIKQHEIKRKKISTVPQVVSKKRKQRKEMIEASKRRKE 534 Score = 60.6 bits (145), Expect = 3e-08, Method: Composition-based stats. Identities = 38/134 (28%), Positives = 56/134 (42%), Gaps = 11/134 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKV-----VVLVNRVHLVT 61 Q E I + EG+++I PTG+GKT A + L + K VV+ L Sbjct 133 QCEAIPASAEGRDLIACAPTGSGKTLAYLIPMAQALISSPKTKNYGIRGVVIAPTNELAI 192 Query 62 QHGEEFRRMLDGRW-TVTTLSGDMG-PRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 Q + M G VT LS + + A D+LICT L ++E Sbjct 193 QIYQTLAPMCRGSNLNVTLLSKQVASKISSSIISANKFDVLICTPLRLID----LVKKEQ 248 Query 120 VELTVFSLIVVDEC 133 V+L+ +V+DE Sbjct 249 VDLSKVEHLVIDEA 262 >sp|Q6H7S2|RH8_ORYSJ DEAD-box ATP-dependent RNA helicase 8 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0641800 PE=2 SV=2 Length=508 Score = 99.5 bits (246), Expect = 1e-20, Method: Composition-based stats. Identities = 52/374 (14%), Positives = 116/374 (31%), Gaps = 34/374 (9%) Query 147 SQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG--------AINHVLQLCANLDTWCIM 198 + + + +P + LT S A G A+ + Q + ++ Sbjct 152 KGFERPSPIQEESIP--IALTGSDILARAKNGTGKTAAFCIPALEKIDQEKNAIQVVILV 209 Query 199 SPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMY 258 + Q + ++ K + + G LK + +++ + + + + Sbjct 210 PTRELALQTSQVCKELGKHLKI--QVMVTTGGTSLKDDIIRLYQPVHLLVGTPGRILDLT 267 Query 259 EQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIH-DTVRAVDALAALQDFYHREHVTK 317 ++ + L + + L + ++ + + + L+ + R + +A +E K Sbjct 268 KKGICILKDCSMLIMDEADKLLSPEFQPSVEQLIRYLPASRQILMFSATFPVTVKEF--K 325 Query 318 TQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTR 377 + L + + + + E K+ L FS + IIF + Sbjct 326 DKYLPKPYVINLMDELTLKGITQFYAFVEERQKV----HCLNTLFSKLQINQSIIFCNSV 381 Query 378 QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA 437 L + + +G M Q + V F++G LV Sbjct 382 NRVELLAKKITE--------------LGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC 427 Query 438 TSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELIN 496 T + G+DI NVV+ + + + GR R A I Sbjct 428 TDLFTRGIDIQAVNVVINFDFPKTAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIE 487 Query 497 EALETLMEQAVAAV 510 + L T ++ + Sbjct 488 QELGTEIKPIPPQI 501 Score = 55.6 bits (132), Expect = 9e-07, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 50/131 (38%), Gaps = 10/131 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA---KVVVLVNRVHLVTQH 63 Q E I AL G +I+ G GKT AA+ + +VV+LV L Q Sbjct 161 QEESIPIALTGSDILARAKNGTGKT--AAFCIPALEKIDQEKNAIQVVILVPTRELALQT 218 Query 64 GEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 + + + + V +G + L + LL+ T + ++ L Sbjct 219 SQVCKELGKHLKIQVMVTTGGTSLKDDIIRLYQPVHLLVGTPGRILD----LTKKGICIL 274 Query 123 TVFSLIVVDEC 133 S++++DE Sbjct 275 KDCSMLIMDEA 285 >sp|Q7RZH4|MAK5_NEUCR ATP-dependent RNA helicase mak-5 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=mak-5 PE=3 SV=1 Length=805 Score = 100 bits (249), Expect = 1e-20, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 50/129 (39%), Gaps = 23/129 (18%) Query 365 SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI 424 + R ++FT + S L L+ + M Q+ + I Sbjct 518 QPTRRALVFTNSVNSVRRLTPLLENLNLPAFP--------------LHSGMIQQARLRSI 563 Query 425 QKFQ--------DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARAD 475 +F+ +G+ +LVAT VA GLDIP ++V+ Y + V GR ARA Sbjct 564 DRFKANEGAKKKNGSAAILVATDVAARGLDIPDVDLVIHYHVPRAAEDYVHRSGRTARAS 623 Query 476 QSVYAFVAT 484 S + + Sbjct 624 NSGTSILLC 632 Score = 49.8 bits (117), Expect = 7e-05, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 58/147 (39%), Gaps = 16/147 (11%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-----------AAYVAKRHLETVDGAKVVVLVN 55 Q + I + G ++I TG+GKT A AA K++ E GA ++L Sbjct 236 QSKAIPEIMAGHDVIGKASTGSGKTLAFGIPVIESWLSAAETRKQNKEERKGATALILSP 295 Query 56 RVHLVTQ---HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALT 112 L Q H + + L + ++ G M + + D++I T + ++ Sbjct 296 TRELAQQIRDHLQALCKGLPTAPYICSVLGGMAVQKQ-KRQLQVADIVIATPGRMWEVMS 354 Query 113 SPEEEEHVELTVFSLIVVDECHHTHKD 139 S + L S +V+DE KD Sbjct 355 S-DNSVLASLRNISFLVLDEADRLLKD 380 >sp|Q09719|DBP10_SCHPO ATP-dependent RNA helicase dbp10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=dbp10 PE=1 SV=1 Length=848 Score = 100 bits (249), Expect = 1e-20, Method: Composition-based stats. Identities = 39/180 (22%), Positives = 61/180 (34%), Gaps = 16/180 (9%) Query 309 FYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSP 368 F + + +LC + ++ L + + LE L+ S S Sbjct 289 FSVKTAEREAALLCILQDIIKLPLKDNVRPREIGNVNNPKKRKRALELALKGSESGSPDS 348 Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 ++F T+ + L Q G S + Q + I F+ Sbjct 349 -TLVFVPTKHHVEYVSELLVQA--------------GYSVSKIYGSLDQEARLNEINNFR 393 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGS 487 G NLLV T VA G+DIP V+ Y V GR ARA ++ +A+ Sbjct 394 LGKTNLLVVTDVASRGIDIPLLANVINYDFPPQPKVFVHRVGRTARAGRTGWAYSLVRAE 453 Score = 51.7 bits (122), Expect = 2e-05, Method: Composition-based stats. Identities = 26/125 (21%), Positives = 48/125 (38%), Gaps = 8/125 (6%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRHLETV---DGAKVVVLVNRVHLVTQHGEEFRRML 71 LEG++++ TG+GKT A HL++ + ++L L Q + + Sbjct 104 LEGRDVVGMARTGSGKTAAFVIPMIEHLKSTLANSNTRALILSPNRELALQTVKVVKDFS 163 Query 72 DG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV 130 G + G + F L+ D+++ T + E +EL+ +V Sbjct 164 KGTDLRSVAIVGGVSLEEQFSLLSGKPDIVVATPGRFLH----LKVEMKLELSSIEYVVF 219 Query 131 DECHH 135 DE Sbjct 220 DEADR 224 >sp|A4RBS3|SUB2_PYRO7 ATP-dependent RNA helicase SUB2 OS=Pyricularia oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 GN=SUB2 PE=3 SV=1 Length=436 Score = 98.7 bits (244), Expect = 1e-20, Method: Composition-based stats. Identities = 55/340 (16%), Positives = 110/340 (32%), Gaps = 43/340 (13%) Query 202 NCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQ 261 C + H+++ Q + R D+ + + EL + T + Sbjct 120 ECSVLVMCHTRELAFQIRNEYNRFSKYMPDIKTGVFFGGTPIQKDAELLKNKETHPHIIV 179 Query 262 V--VKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDF-----YHREH 314 +L+ L+ V L + L D R V + Sbjct 180 GTPGRLNALVRDKFLRLSSVRIFVLDECDKMLDQIDMRRDVQEIFRATPQQKQVMMFSAT 239 Query 315 VTKTQILCAERRLLALFDDRKNELAHLATHG--------PENPKLEMLEKILQRQFSSSN 366 ++ ++ + + +E L HG E K L ++L Sbjct 240 LSDEIKPICKKFMQNPTEHYVDEDTKLTLHGLQQYFVALEEKEKNRKLNELLDDL----Q 295 Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + IIF ++ A L L++ + + ++Q ++ ++ Sbjct 296 FNQVIIFVKSTLRATELDKLLRECNFPSI--------------AVHSGVSQEERIRRYKE 341 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQS---VYAFVA 483 F++ + VAT V G+DI N+ + Y + + S + GRA + +FV Sbjct 342 FKEFNKRICVATDVFGRGIDIERINLAINYDMPADADSYLHRVGRAGRFGTKGLAVSFVT 401 Query 484 TEGSRELKRELINEALETLMEQAVAAVQK--MDQAEYQAK 521 + +E+ A+E E + K +D + Y A Sbjct 402 NDQDKEVLT-----AIEKRFEVPIPEFPKDGIDASTYMAS 436 Score = 53.6 bits (127), Expect = 4e-06, Method: Composition-based stats. Identities = 42/268 (16%), Positives = 90/268 (34%), Gaps = 34/268 (13%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG-AKVVVLVNRVHLVTQ--- 62 Q I A+ G +II +G GKT + +E V G V+V+ + L Q Sbjct 79 QQTCIPQAMLGGDIICQAKSGLGKTAVFVLTTLQQVEPVAGECSVLVMCHTRELAFQIRN 138 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHD----LLICTAELLQMALTSPEEEE 118 F + + T G P L + + +++ T L AL ++ Sbjct 139 EYNRFSKYMPDIKTGVFFGG--TPIQKDAELLKNKETHPHIIVGTPGRL-NAL---VRDK 192 Query 119 HVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKL 178 + L+ + V+DEC + + Q+ QV+ +A+ Sbjct 193 FLRLSSVRIFVLDECDKMLDQIDMRRDVQEIFRATPQQK----QVMMFSAT--------- 239 Query 179 DGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMD 238 + + +C + +L H Q + + + ++ L +L+D Sbjct 240 --LSDEIKPICKKFMQNPTEHYVDEDTKLTLHGLQ--QYFVALEEKEKN---RKLNELLD 292 Query 239 QIHDHLEMPELSRKFGTQMYEQQVVKLS 266 + + + + ++ + + + Sbjct 293 DLQFNQVIIFVKSTLRATELDKLLRECN 320 >sp|P39517|DHH1_YEAST ATP-dependent RNA helicase DHH1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DHH1 PE=1 SV=1 Length=506 Score = 99.1 bits (245), Expect = 1e-20, Method: Composition-based stats. Identities = 59/375 (16%), Positives = 121/375 (32%), Gaps = 25/375 (7%) Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 SP A + +L N + P L++ + K L +++ Sbjct 70 SPIQEEAIPVAITGRDILARAKN---GTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRE- 125 Query 229 FGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN 288 +++ + H + + GT + + + +L+E + RV L R+ Sbjct 126 LALQTSQVVRTLGKHCGISCMVTTGGTNLRDDIL-RLNETVHILVGTPGRVLDLASRKVA 184 Query 289 DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPEN 348 D L ++ +D + + + + LF + Sbjct 185 D--LSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLH 242 Query 349 PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI-----RAQLL 403 E+ L + + + F RQ H L + Q Q + R +LL Sbjct 243 KPYEI---NLMEELTLKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELL 299 Query 404 ------IGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG 457 +G M Q+++ +V +F+ G + LV + + G+DI NVV+ + Sbjct 300 AKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFD 359 Query 458 LLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQA 516 + + GR R A + R + + + L + A +D++ Sbjct 360 FPKTAETYLHRIGRSGRFGHLGLAINLINWN---DRFNLYKIEQELGTEIAAIPATIDKS 416 Query 517 EYQAKIRDLQQAALT 531 Y A+ + Sbjct 417 LYVAENDETVPVPFP 431 Score = 52.5 bits (124), Expect = 9e-06, Method: Composition-based stats. Identities = 30/132 (23%), Positives = 51/132 (39%), Gaps = 12/132 (9%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA----KVVVLVNRVHLVTQ 62 Q E I A+ G++I+ G GKT AA+V LE V + +++V L Q Sbjct 73 QEEAIPVAITGRDILARAKNGTGKT--AAFVI-PTLEKVKPKLNKIQALIMVPTRELALQ 129 Query 63 HGEEFRRMLDGRWTVTTL-SGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVE 121 + R + + +G R L +L+ T + + + Sbjct 130 TSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLD----LASRKVAD 185 Query 122 LTVFSLIVVDEC 133 L+ SL ++DE Sbjct 186 LSDCSLFIMDEA 197 >sp|A6ZXG9|DHH1_YEAS7 ATP-dependent RNA helicase DHH1 OS=Saccharomyces cerevisiae (strain YJM789) OX=307796 GN=DHH1 PE=3 SV=1 Length=506 Score = 99.1 bits (245), Expect = 1e-20, Method: Composition-based stats. Identities = 59/375 (16%), Positives = 121/375 (32%), Gaps = 25/375 (7%) Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 SP A + +L N + P L++ + K L +++ Sbjct 70 SPIQEEAIPVAITGRDILARAKN---GTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRE- 125 Query 229 FGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN 288 +++ + H + + GT + + + +L+E + RV L R+ Sbjct 126 LALQTSQVVRTLGKHCGISCMVTTGGTNLRDDIL-RLNETVHILVGTPGRVLDLASRKVA 184 Query 289 DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPEN 348 D L ++ +D + + + + LF + Sbjct 185 D--LSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLH 242 Query 349 PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI-----RAQLL 403 E+ L + + + F RQ H L + Q Q + R +LL Sbjct 243 KPYEI---NLMEELTLKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELL 299 Query 404 ------IGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG 457 +G M Q+++ +V +F+ G + LV + + G+DI NVV+ + Sbjct 300 AKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFD 359 Query 458 LLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQA 516 + + GR R A + R + + + L + A +D++ Sbjct 360 FPKTAETYLHRIGRSGRFGHLGLAINLINWN---DRFNLYKIEQELGTEIAAIPATIDKS 416 Query 517 EYQAKIRDLQQAALT 531 Y A+ + Sbjct 417 LYVAENDETVPVPFP 431 Score = 52.5 bits (124), Expect = 9e-06, Method: Composition-based stats. Identities = 30/132 (23%), Positives = 51/132 (39%), Gaps = 12/132 (9%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA----KVVVLVNRVHLVTQ 62 Q E I A+ G++I+ G GKT AA+V LE V + +++V L Q Sbjct 73 QEEAIPVAITGRDILARAKNGTGKT--AAFVI-PTLEKVKPKLNKIQALIMVPTRELALQ 129 Query 63 HGEEFRRMLDGRWTVTTL-SGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVE 121 + R + + +G R L +L+ T + + + Sbjct 130 TSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLD----LASRKVAD 185 Query 122 LTVFSLIVVDEC 133 L+ SL ++DE Sbjct 186 LSDCSLFIMDEA 197 >sp|A2QY39|DHH1_ASPNC ATP-dependent RNA helicase dhh1 OS=Aspergillus niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) OX=425011 GN=dhh1 PE=3 SV=1 Length=505 Score = 99.1 bits (245), Expect = 1e-20, Method: Composition-based stats. Identities = 55/322 (17%), Positives = 99/322 (31%), Gaps = 30/322 (9%) Query 234 KKLMDQI---HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDA 290 LMD I +D + + + + + V LSE + ++ + + Sbjct 153 TGLMDDIIRLNDAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQ 212 Query 291 LL-IHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENP 349 LL H R V +A + K + + + + + + E Sbjct 213 LLSFHPKDRQVMLFSATFPLIVKSF--KDKHMRNPYEINLMDELTLRGITQYYAFVEEKQ 270 Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ L FS + IIF + L + + +G Sbjct 271 KV----HCLNTLFSKLQINQSIIFCNSTNRVELLAKKITE--------------LGYSCF 312 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 M Q+ + V F++G LV + + G+DI NVV+ + N + + Sbjct 313 YSHARMLQQHRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRI 372 Query 470 GR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM-----DQAEYQAKIR 523 GR R A I + L T ++ + K I Sbjct 373 GRSGRFGHLGLAINLINWEDRFNLYKIEQELGTEIQPIPQNIDKKLYVYDSPDTIPRPIA 432 Query 524 DLQQAALTKRAAQAAQRENQRQ 545 + Q +T +AA A E + Sbjct 433 NPSQPQITAQAANANIGERRHN 454 Score = 50.6 bits (119), Expect = 4e-05, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 46/131 (35%), Gaps = 10/131 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA---KVVVLVNRVHLVTQH 63 Q E I AL G++I+ G GKT AA+V + + ++LV L Q Sbjct 74 QEETIPVALTGRDILARAKNGTGKT--AAFVIPTLERINPKSTKTQALILVPTRELALQT 131 Query 64 GEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 + + V +G G L +L+ T + + +L Sbjct 132 SHVCKTLGKHLGINVMVTTGGTGLMDDIIRLNDAVHILVGTPGRVLD----LASKGVADL 187 Query 123 TVFSLIVVDEC 133 + V+DE Sbjct 188 SECPTFVMDEA 198 >sp|Q39189|RH7_ARATH DEAD-box ATP-dependent RNA helicase 7 OS=Arabidopsis thaliana OX=3702 GN=RH7 PE=1 SV=2 Length=671 Score = 100 bits (248), Expect = 1e-20, Method: Composition-based stats. Identities = 32/172 (19%), Positives = 61/172 (35%), Gaps = 22/172 (13%) Query 365 SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI 424 S+ + IIF T+ L L G+ + + Q ++ + Sbjct 348 SSGGQTIIFAETKVQVSELSGLLD------------------GSRALHGEIPQSQREVTL 389 Query 425 QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVA 483 F++G LVAT+VA GLDI ++++ + + GR RA + A Sbjct 390 AGFRNGKFATLVATNVAARGLDINDVQLIIQCEPPREVEAYIHRSGRTGRAGNTGVAVTL 449 Query 484 TEGSRELKRELINEA---LETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTK 532 + + + EA E L + + E K++ + + + Sbjct 450 YDSRKSSVSRIEKEAGIKFEHLAAPQPDEIARSGGMEAAEKVKQVCDSVVPA 501 Score = 43.6 bits (101), Expect = 0.007, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 42/121 (35%), Gaps = 18/121 (15%) Query 26 TGAGKTRAAAYVAKRHLETVDGA-----------KVVVLVNRVHLVTQHGEEFRRMLD-- 72 TG GKT A L V+VL+ L Q +F Sbjct 142 TGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDAYGGSL 201 Query 73 GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDE 132 G + GD P G L R D+++ T ++ + E ++++ + V+DE Sbjct 202 GLSSCCLYGGDSYP-VQEGKLKRGVDIVVGTPGRIKDHI----ERQNLDFSYLQFRVLDE 256 Query 133 C 133 Sbjct 257 A 257 >sp|Q0U6X2|MAK5_PHANO ATP-dependent RNA helicase MAK5 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) OX=321614 GN=MAK5 PE=3 SV=1 Length=817 Score = 100 bits (248), Expect = 2e-20, Method: Composition-based stats. Identities = 43/195 (22%), Positives = 73/195 (37%), Gaps = 25/195 (13%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K L +L R +IFT + + L +LQ Sbjct 528 KDLYLYSLLMFY----PKKRALIFTNSISAVRRLTPFLQNLALPALP------------- 570 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + M Q+ + I++F++ ++LVAT VA GLDIP +V+ Y L + V Sbjct 571 -LHSSMAQKARLRSIERFKERPGSILVATDVAARGLDIPKVELVIHYHLPRAADTYVHRS 629 Query 470 GR-ARADQSVYAFVATE-GSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQ 527 GR ARA+ S + + R LI + E K + Y + D+ + Sbjct 630 GRTARAEASGSSILICAPEEVGGVRRLIAKVHARADE-----APKSKKTAYFIRTLDIDR 684 Query 528 AALTKRAAQAAQREN 542 + + +A+ + Sbjct 685 RIVARLKPRASISKK 699 Score = 43.2 bits (100), Expect = 0.009, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 55/150 (37%), Gaps = 19/150 (13%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAK--------VVVLVNRV 57 Q I + G+++I TG+GKT A + + +L + +K +++ Sbjct 276 QASTIPEIMAGRDVIGKASTGSGKTLAFGIPIIESYLASKSKSKDVKDKTPLALIIAPTR 335 Query 58 HLVTQ---HGEEFRRMLDGRWT-VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTS 113 L Q H + +++G + + L D+++ T L +++ Sbjct 336 ELAHQITAHLTALCAKGAFEAPLIASVTGGLAVQKQRRQL-EKADIIVGTPGRLWEVIST 394 Query 114 PEEEEHV-ELTVFSLIVVDECHH--THKDT 140 + ++ +VVDE + + Sbjct 395 G--HGLLEKVKQIRFLVVDEADRLLSQGNY 422 >sp|Q55CP6|DDX1_DICDI Probable ATP-dependent RNA helicase ddx1 OS=Dictyostelium discoideum OX=44689 GN=ddx1 PE=3 SV=1 Length=765 Score = 100 bits (248), Expect = 2e-20, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 53/125 (42%), Gaps = 4/125 (3%) Query 366 NSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQ 425 + IIF RTR + +L+ G T + + + + R +++ ++ Sbjct 533 KMDQAIIFARTRLDCDHIHQFLKDAGGGNTSGLEGEFSSTVLHGGDNIS---RARKDNLE 589 Query 426 KFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVAT 484 KF++G + L+ T VA G+DI ++ Y L + + GR R+D+ A Sbjct 590 KFRNGDVRFLICTDVAARGIDIRGLPYMINYTLPESFEDYIHRVGRVGRSDRIGLAISLV 649 Query 485 EGSRE 489 +E Sbjct 650 AYEQE 654 >sp|Q8N8A6|DDX51_HUMAN ATP-dependent RNA helicase DDX51 OS=Homo sapiens OX=9606 GN=DDX51 PE=1 SV=3 Length=666 Score = 99.9 bits (247), Expect = 2e-20, Method: Composition-based stats. Identities = 48/244 (20%), Positives = 95/244 (39%), Gaps = 25/244 (10%) Query 301 DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPK-LEMLEKILQ 359 L Q + + + + L H + K L +L +L+ Sbjct 442 QQLGLHQPRLFSTGLAHRGLEDTDGDGDSGKYAFPVGLTHHYVPCSLSSKPLVVLHLVLE 501 Query 360 RQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRD 419 FS R + FT +R+++H L L +Q G+ + ++ G Sbjct 502 MGFS-----RVLCFTNSRENSHRLFLLVQAFGGVDVAEFSSRYGPG-------------Q 543 Query 420 QQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSV 478 ++ ++++F+ G + LL++T G+D+ +VV Y + V GR ARA ++ Sbjct 544 RRMILKQFEQGKIQLLISTDATARGIDVQGVELVVNYDAPQYLRTYVHRVGRTARAGKTG 603 Query 479 YAF--VATEGSRELKRELINEALETLMEQAVAA--VQKMDQAEYQAKIRDLQQAALTKRA 534 AF + R R L L +++ +Q + Y+ + L+++ +R Sbjct 604 QAFTLLLKVQERRFLRMLTEAGAPELQRHELSSKLLQPLVP-RYEEALSQLEESVKEERK 662 Query 535 AQAA 538 +AA Sbjct 663 QRAA 666 Score = 52.9 bits (125), Expect = 9e-06, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 41/127 (32%), Gaps = 14/127 (11%) Query 20 IIIWLPTGAGKT--RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDG-RWT 76 + + PTG+GKT V V + +V++ L Q + F D Sbjct 252 LCVSAPTGSGKTLAFVIPVVQALLSRVVCHIRALVVLPTKELAQQVSKVFNIYTDATPLR 311 Query 77 VTTLSGDMGPRAGFGHLARCH--------DLLICTAELLQMALTSPEEEEHVELTVFSLI 128 V+ ++G L + D+++ T L + L + Sbjct 312 VSLVTGQKSLAKEQESLVQKTADGYRCLADIVVATPGRLVDHIDQTPG---FSLQQLRFL 368 Query 129 VVDECHH 135 ++DE Sbjct 369 IIDEADR 375 >sp|Q0U7S9|DHH1_PHANO ATP-dependent RNA helicase DHH1 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) OX=321614 GN=DHH1 PE=3 SV=1 Length=522 Score = 99.1 bits (245), Expect = 2e-20, Method: Composition-based stats. Identities = 48/294 (16%), Positives = 92/294 (31%), Gaps = 27/294 (9%) Query 229 FGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN 288 D + +L D +H + P + V LS + ++ + Sbjct 157 LKDDIIRLSDPVHIIVGTPGRILDLAG----KGVADLSTCQTFVMDEADKLLSPEFTPVV 212 Query 289 DALL-IHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPE 347 + LL H R V +A + K + + + + + + + E Sbjct 213 EQLLGFHPKDRQVMLFSATFPIVVKTF--KDKHMNSPYEINLMDELTLRGITQYYAFVEE 270 Query 348 NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG 407 K+ L F+ + IIF + L + + +G Sbjct 271 KQKV----HCLNTLFNKLQINQSIIFCNSTNRVELLAKKITE--------------LGYS 312 Query 408 NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 M Q ++ V F++G LV + + G+DI NVV+ + N + + Sbjct 313 CFYSHARMLQHNRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLH 372 Query 468 ARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA 520 GR R A I + L T + Q + V + + Y++ Sbjct 373 RIGRSGRFGHLGLAINLINWEDRFNLYRIEQELGTEI-QPIPQVIEKNLYVYES 425 Score = 51.3 bits (121), Expect = 2e-05, Method: Composition-based stats. Identities = 27/131 (21%), Positives = 48/131 (37%), Gaps = 10/131 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG---AKVVVLVNRVHLVTQH 63 Q E I AL G++I+ G GKT AA+V + ++LV L Q Sbjct 76 QEETIPVALTGRDILARAKNGTGKT--AAFVIPTLERVNPKISKTQALILVPTRELALQT 133 Query 64 GEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 + + + V +G G + L+ +++ T + + +L Sbjct 134 SQVCKTLGKHLGINVMVSTGGTGLKDDIIRLSDPVHIIVGTPGRILD----LAGKGVADL 189 Query 123 TVFSLIVVDEC 133 + V+DE Sbjct 190 STCQTFVMDEA 200 >sp|A3LSJ2|DBP6_PICST ATP-dependent RNA helicase DBP6 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) OX=322104 GN=DBP6 PE=3 SV=2 Length=591 Score = 99.5 bits (246), Expect = 2e-20, Method: Composition-based stats. Identities = 39/191 (20%), Positives = 75/191 (39%), Gaps = 17/191 (9%) Query 350 KLEMLEKILQRQFSSSNS-PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN 408 K + IL + +N +IFT++ +++ L L+ G + + N Sbjct 407 KASIKPLILAKYLLENNKLSNVLIFTKSNEASIRLCKLLELMFGKLHPSMNIAYINSTNN 466 Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 S + ++++ F +N+LVAT + G+DI V+ Y L + V Sbjct 467 KSAI-------RTKILKDFSTQKINILVATDLIARGIDILSITDVINYDLPNSSREYVHR 519 Query 469 RGR-ARADQSVYAFVATEGSRELKRELI--------NEALETLMEQAVAAVQKMDQAEYQ 519 GR ARA+Q+ +A+ G E K ++ +E + + + D+ Y Sbjct 520 VGRTARANQTGHAYTLCFGKGEAKWFKKIISDVGRGDKTIEKVEIELKELIVAEDENVYN 579 Query 520 AKIRDLQQAAL 530 + L + Sbjct 580 ECLESLSKQVF 590 Score = 58.3 bits (139), Expect = 2e-07, Method: Composition-based stats. Identities = 26/120 (22%), Positives = 49/120 (41%), Gaps = 8/120 (7%) Query 20 IIIWLPTGAGKTRAAAYVAKRHLET--VDGAKVVVLVNRVHLVTQHGEEFRRMLDGRW-T 76 I++ TG+GKT A + L V + +VLV L+ Q F ++ G + Sbjct 204 ILVNAATGSGKTLAYSIPIIEALHNRVVPRVRAIVLVPTKPLINQVKATFVQLSRGTNLS 263 Query 77 VTTLSGDMGPRAGFGHLARC-HDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH 135 V +L D+ + + D+++ T L +++ + L +V+DE Sbjct 264 VVSLRNDVSIKEEGIKIVNSPPDIIVSTPGRLVEHISNKS----INLNSLQFLVIDEADR 319 >sp|Q4R4Y9|IF4A2_MACFA Eukaryotic initiation factor 4A-II OS=Macaca fascicularis OX=9541 GN=EIF4A2 PE=2 SV=1 Length=408 Score = 97.9 bits (242), Expect = 2e-20, Method: Composition-based stats. Identities = 33/221 (15%), Positives = 79/221 (36%), Gaps = 28/221 (13%) Query 248 ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRA-VDALAAL 306 L+R++ + + + V L+ + ++Y + + ++ + D L Sbjct 167 MLNRRYLSPKWIKMFVLDEADGMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVT 226 Query 307 QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSN 366 + F + + F KL+ L + + + Sbjct 227 KKFMRDPIRILVKKEELTLEGIKQFYINVEREEW---------KLDTLCDL----YETLT 273 Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + +IF TR+ L + + D L G M Q+++ ++++ Sbjct 274 ITQAVIFLNTRRKVDWLT------EKMHARDFTVSALHG--------DMDQKERDVIMRE 319 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 F+ G+ +L+ T + G+D+ ++V+ Y L TN + + Sbjct 320 FRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIH 360 Score = 51.0 bits (120), Expect = 2e-05, Method: Composition-based stats. Identities = 32/166 (19%), Positives = 58/166 (35%), Gaps = 12/166 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLET-VDGAKVVVLVNRVHLVTQHGE 65 Q I+P ++G ++I +G GKT A + LE + +VL L Q + Sbjct 61 QQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQK 120 Query 66 EFRRMLDGRWTVTTLS-GDMGPRAGFGHL-ARCHDLLICTAELLQMALTSPEEEEHVELT 123 + D G R L A +++ T + L ++ Sbjct 121 VILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRR----YLSPK 176 Query 124 VFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS 169 + V+DE D + + + Q+ QV+ L+A+ Sbjct 177 WIKMFVLDEA-----DGMLSRGFKDQIYEIFQKLNTSIQVVLLSAT 217 >sp|A1CMQ7|SUB2_ASPCL ATP-dependent RNA helicase sub2 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=sub2 PE=3 SV=1 Length=441 Score = 98.3 bits (243), Expect = 2e-20, Method: Composition-based stats. Identities = 52/335 (16%), Positives = 115/335 (34%), Gaps = 51/335 (15%) Query 200 PQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYE 259 P C + H+++ Q + R D+ + + E+ + Y Sbjct 124 PGECSVLVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDVEVLSN--KESYP 181 Query 260 QQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQD----------- 308 VV L L + +L R A ++ + + +D + +D Sbjct 182 NIVVGT--PGRLNALVRDKKLSL---RNVKAFVLDECDKMLDQIDMRRDVQEIFRATPAD 236 Query 309 ---FYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG--------PENPKLEMLEKI 357 +++ ++ + + ++ L HG E+ K L ++ Sbjct 237 KQVMMFSATLSQEIRPICKKFMRNPLEVYVDDDTKLTLHGLQQYYIKLSESEKNRKLNEL 296 Query 358 LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ 417 L + IIF ++ A+ L L++ + + ++Q Sbjct 297 LDSL----EFNQVIIFVKSTLRANELDKLLRECNFPSI--------------AVHSGVSQ 338 Query 418 RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQS 477 ++ + ++F++ + VAT V G+DI N+ + Y L + S + GRA + Sbjct 339 EERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGT 398 Query 478 ---VYAFVATEGSRELKRELINEALETLMEQAVAA 509 +FV+ E ++ +E I + E + + Sbjct 399 KGLSISFVSNEDDEKVLKE-IEKRFEVALPEYPEG 432 Score = 47.1 bits (110), Expect = 5e-04, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 47/135 (35%), Gaps = 14/135 (10%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG-AKVVVLVNRVHLVTQ--- 62 Q I A+ +++ +G GKT LE V G V+V+ + L Q Sbjct 85 QQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQIKN 144 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHD----LLICTAELLQMALTSPEEEE 118 F + L T G P + + +++ T L AL ++ Sbjct 145 EYARFSKYLPDVKTAVFYGG--TPIQKDVEVLSNKESYPNIVVGTPGRL-NALVRDKK-- 199 Query 119 HVELTVFSLIVVDEC 133 + L V+DEC Sbjct 200 -LSLRNVKAFVLDEC 213 >sp|Q09181|DHH1_SCHPO Putative ATP-dependent RNA helicase ste13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ste13 PE=3 SV=1 Length=485 Score = 98.7 bits (244), Expect = 2e-20, Method: Composition-based stats. Identities = 58/386 (15%), Positives = 113/386 (29%), Gaps = 34/386 (9%) Query 165 GLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRR 224 G TA+ K+D + + L + C L +H Sbjct 93 GKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVCKTLGKHMNVKVMVTTG---- 148 Query 225 SQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHL 284 G L+ + +++D + + + + + V SE + ++ + Sbjct 149 -----GTTLRDDIIRLNDTVHIVVGTPGRVLDLAGKGVADFSECTTFVMDEADKLLSPEF 203 Query 285 RRYNDALLIH-DTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLAT 343 + LL + R + +A + + K L + + + + Sbjct 204 TPIIEQLLSYFPKNRQISLYSATFPLIVKNFMDK--HLNKPYEINLMDELTLRGVTQYYA 261 Query 344 HGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLL 403 E+ K+ L FS + IIF + L + + Sbjct 262 FVDESQKV----HCLNTLFSKLQINQSIIFCNSTNRVELLAKKITE-------------- 303 Query 404 IGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI 463 +G M Q + V F++G LV + + G+DI NVV+ + N Sbjct 304 LGYSCFYSHAKMLQSHRNRVFHNFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAE 363 Query 464 SMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKI 522 + + GR R A + I L T ++ ++ D + Y Sbjct 364 TYLHRIGRSGRFGHRGLAISFISWADRFNLYRIENELGTEIQPIPPSI---DPSLYVFPN 420 Query 523 RDLQQAALTKRAAQAAQRENQRQQFP 548 D Q +A Q + Sbjct 421 GDYQIPRPLTASADQVLAAQQAKGQE 446 Score = 51.3 bits (121), Expect = 2e-05, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 50/132 (38%), Gaps = 12/132 (9%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK----VVVLVNRVHLVTQ 62 Q E I AL G++I+ G GKT AA+V LE VD K ++LV L Q Sbjct 71 QEESIPIALSGRDILARAKNGTGKT--AAFVIPS-LEKVDTKKSKIQTLILVPTRELALQ 127 Query 63 HGEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVE 121 + + + V +G R L +++ T + + + Sbjct 128 TSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLNDTVHIVVGTPGRVLD----LAGKGVAD 183 Query 122 LTVFSLIVVDEC 133 + + V+DE Sbjct 184 FSECTTFVMDEA 195 >sp|A6R3R5|IF4A_AJECN ATP-dependent RNA helicase eIF4A OS=Ajellomyces capsulatus (strain NAm1 / WU24) OX=2059318 GN=TIF1 PE=3 SV=1 Length=385 Score = 97.6 bits (241), Expect = 2e-20, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 48/118 (41%), Gaps = 14/118 (12%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K E L + + + +IF TR+ L L D + G Sbjct 247 KEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKL------TARDFTVSAMHG---- 296 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 M Q+ + ++++F+ G+ +L+AT + G+D+ ++V+ Y L N + + Sbjct 297 ----DMEQQQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIH 350 Score = 53.6 bits (127), Expect = 3e-06, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 45/129 (35%), Gaps = 6/129 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q IMP ++G ++I +G GKT + ++ + + ++L L Q + Sbjct 52 QQRAIMPVIKGSDVIAQAQSGTGKTATFSISALQKVDTNLKACQALILAPTRELAQQIQK 111 Query 66 EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 + D G + R L +++ T + + ++ Sbjct 112 VVVAIGDFMSIECHACIGGISVREDMKALQDGPQVVVGTPGRVHDMIQRRV----LKTDH 167 Query 125 FSLIVVDEC 133 + V+DE Sbjct 168 MKMFVLDEA 176 >sp|Q1E5R1|DHH1_COCIM ATP-dependent RNA helicase DHH1 OS=Coccidioides immitis (strain RS) OX=246410 GN=DHH1 PE=3 SV=1 Length=512 Score = 98.7 bits (244), Expect = 2e-20, Method: Composition-based stats. Identities = 51/328 (16%), Positives = 99/328 (30%), Gaps = 36/328 (11%) Query 229 FGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN 288 D + +L D +H + P + + V LSE + ++ + Sbjct 155 LQDDIIRLSDTVHIIVGTPGRILDLAS----KGVADLSECTTFVMDEADKLLSPEFTPVI 210 Query 289 DALL-IHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPE 347 + LL H R V +A + K + + + + + + E Sbjct 211 EQLLSFHPKDRQVMLFSATFPMIVKSF--KDKHMRNPYEINLMDELTLRGITQYYAFVEE 268 Query 348 NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG 407 K+ L FS + IIF + L + + +G Sbjct 269 RQKV----HCLNTLFSKLQINQSIIFCNSTNRVELLAKKITE--------------LGYS 310 Query 408 NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 M Q+++ V F++G LV + + G+DI NVV+ + N + + Sbjct 311 CFYSHARMLQQNRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLH 370 Query 468 ARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAV----------QKMDQA 516 GR R A I + L T ++ ++ + + + Sbjct 371 RIGRSGRFGHLGLAINLINWDDRYNLYKIEQELGTEIQPIPPSIDKKLYVYDTPETIPRP 430 Query 517 EYQAKIRDLQQAALTKRAAQAAQRENQR 544 A A L + + R+ Sbjct 431 IANASTERNPPAQLAQSSDNQNHRQAHH 458 Score = 54.0 bits (128), Expect = 3e-06, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 50/131 (38%), Gaps = 10/131 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG---AKVVVLVNRVHLVTQH 63 Q E I AL G++I+ G GKT AA+V T + ++LV L Q Sbjct 74 QEETIPVALTGRDILARAKNGTGKT--AAFVIPTLERTNPKISKTQALILVPTRELALQT 131 Query 64 GEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 + + + V +G G + L+ +++ T + + +L Sbjct 132 SQVCKTLGKHLGINVMVTTGGTGLQDDIIRLSDTVHIIVGTPGRILD----LASKGVADL 187 Query 123 TVFSLIVVDEC 133 + + V+DE Sbjct 188 SECTTFVMDEA 198 >sp|P10486|T1R1_ECOLX Type I restriction enzyme EcoR124I/EcoR124II endonuclease subunit OS=Escherichia coli OX=562 GN=hsdR PE=1 SV=2 Length=1038 Score = 100 bits (248), Expect = 2e-20, Method: Composition-based stats. Identities = 50/369 (14%), Positives = 102/369 (28%), Gaps = 38/369 (10%) Query 1 MELRSYQWEVIMP-------ALEGKN-------IIIWLPTGAGKTRAAAYVAKRHLETVD 46 + +R YQ + KN IW TG+GKT + A+ E Sbjct 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAARLATELDF 329 Query 47 GAKVVVLVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAEL 106 KV +V+R L Q +E++R + + + + +++ T + Sbjct 330 IDKVFFVVDRKDLDYQTMKEYQRFSPDSVNGSENTAGLKRNLDKDD----NKIIVTTIQK 385 Query 107 LQMALTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGL 166 L L E + V + + DECH + + ++ G Sbjct 386 L-NNLMKAESDLPVYNQQV-VFIFDECHRSQFGEAQKNLKKKFKRYYQ---------FGF 434 Query 167 TASPGTGGASKLDGAINHVLQLCANLDTWCIMSP-QNCCPQLQEHSQQPCKQYNLCHRRS 225 T +P + V L ++ I ++ + + Sbjct 435 TGTPIFPENALGSETTASVFGRE--LHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETE 492 Query 226 QDPFGDLLKKLMDQIHDHLEMPEL------SRKFGTQMYEQQVVKLSEAAALAGLQEQRV 279 D + + + E+ + + T + A++ + + Sbjct 493 TDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKA 552 Query 280 YALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELA 339 Y +R + +A + F E + E + D E Sbjct 553 YYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFL 612 Query 340 HLATHGPEN 348 A + Sbjct 613 DAAIREYNS 621 >sp|A1DL85|SUB2_NEOFI ATP-dependent RNA helicase sub2 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=sub2 PE=3 SV=1 Length=441 Score = 97.9 bits (242), Expect = 2e-20, Method: Composition-based stats. Identities = 50/335 (15%), Positives = 112/335 (33%), Gaps = 51/335 (15%) Query 200 PQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYE 259 P C + H+++ Q + R D+ + + E+ + Y Sbjct 124 PGECSVLVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDIEVLSN--KESYP 181 Query 260 QQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQD----------- 308 VV L R A ++ + + +D + +D Sbjct 182 NIVV-----GTPGRLNALVREKKLSLRNVKAFVLDECDKMLDQIDMRRDVQEIFRATPAD 236 Query 309 ---FYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG--------PENPKLEMLEKI 357 +++ ++ + + ++ L HG E+ K L ++ Sbjct 237 KQVMMFSATLSQEIRPICKKFMRNPLEVYVDDDTKLTLHGLQQYYIKLSESEKNRKLNEL 296 Query 358 LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ 417 L + IIF ++ A+ L L++ + + ++Q Sbjct 297 LDSL----EFNQVIIFVKSTLRANELDKLLRECNFPSI--------------AVHSGVSQ 338 Query 418 RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQS 477 ++ + ++F++ + VAT V G+DI N+ + Y L + S + GRA + Sbjct 339 EERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGT 398 Query 478 ---VYAFVATEGSRELKRELINEALETLMEQAVAA 509 +FV++E ++ +E I + E + + Sbjct 399 KGLSISFVSSEEDEKVLKE-IEKRFEVALPEYPEG 432 Score = 47.9 bits (112), Expect = 3e-04, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 47/135 (35%), Gaps = 14/135 (10%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG-AKVVVLVNRVHLVTQ--- 62 Q I A+ +++ +G GKT LE V G V+V+ + L Q Sbjct 85 QQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQIKN 144 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHD----LLICTAELLQMALTSPEEEE 118 F + L T G P + + +++ T L AL ++ Sbjct 145 EYARFSKYLPDVKTAVFYGG--TPIQKDIEVLSNKESYPNIVVGTPGRL-NALVREKK-- 199 Query 119 HVELTVFSLIVVDEC 133 + L V+DEC Sbjct 200 -LSLRNVKAFVLDEC 213 >sp|A6R603|SUB2_AJECN ATP-dependent RNA helicase SUB2 OS=Ajellomyces capsulatus (strain NAm1 / WU24) OX=2059318 GN=SUB2 PE=3 SV=2 Length=442 Score = 97.9 bits (242), Expect = 3e-20, Method: Composition-based stats. Identities = 53/328 (16%), Positives = 112/328 (34%), Gaps = 37/328 (11%) Query 200 PQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYE 259 P C + H+++ Q + R D+ + + EL T Sbjct 125 PGECSILVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPMQKDIELLSSKDTYPSI 184 Query 260 QQV--VKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDF-----YHR 312 +L+ L + + A L + L D R V + Sbjct 185 VVGTPGRLNALVRDKKLSLRNIKAFVLDECDKMLDQIDMRRDVQEIFRATPADKQVMMFS 244 Query 313 EHVTKTQILCAERRLLALFDDRKNELAHLATHG--------PENPKLEMLEKILQRQFSS 364 +++ ++ + + ++ L HG E+ K L ++L Sbjct 245 ATLSQEVRPICKKFMRNPLEVYVDDDTKLTLHGLLQYYIKLGESEKNRKLNELLDSL--- 301 Query 365 SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI 424 + IIF ++ Q A L L++ + + ++Q ++ + Sbjct 302 -EFNQVIIFVKSTQRASELDKLLRECNFPSI--------------AVHSGVSQEERIKRY 346 Query 425 QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQS---VYAF 481 ++F++ + VAT V G+DI N+ + Y L + S + GRA + +F Sbjct 347 KEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLAISF 406 Query 482 VATEGSRELKRELINEALETLMEQAVAA 509 V++E +E+ ++ I + E + + Sbjct 407 VSSEQDQEVLKD-IEKRFEVALPEYPQG 433 Score = 49.8 bits (117), Expect = 6e-05, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 47/135 (35%), Gaps = 14/135 (10%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG-AKVVVLVNRVHLVTQ--- 62 Q I A+ +++ +G GKT LE V G ++V+ + L Q Sbjct 86 QQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSILVMCHTRELAYQIKN 145 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHD----LLICTAELLQMALTSPEEEE 118 F + L T G P L D +++ T L AL ++ Sbjct 146 EYARFSKYLPDVKTAVFYGG--TPMQKDIELLSSKDTYPSIVVGTPGRL-NALVRDKK-- 200 Query 119 HVELTVFSLIVVDEC 133 + L V+DEC Sbjct 201 -LSLRNIKAFVLDEC 214 >sp|Q6DRI7|DDX51_DANRE ATP-dependent RNA helicase DDX51 OS=Danio rerio OX=7955 GN=ddx51 PE=2 SV=1 Length=652 Score = 99.1 bits (245), Expect = 3e-20, Method: Composition-based stats. Identities = 40/198 (20%), Positives = 83/198 (42%), Gaps = 23/198 (12%) Query 333 DRKNELAHLATHGPENPK-LEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQ 391 L+ + K L +L +L+ +FS + FT +R+ AH L L ++ Sbjct 460 HFPQGLSEYYVPCTFSKKPLIILHFLLRLKFSP-----ALCFTNSREGAHRLYLLVK--- 511 Query 392 GLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN 451 L G + S+ ++ ++Q+ ++ F+ G + LL++T A G+DI Sbjct 512 ----------LFGGVEVAEFSSKLSPGERQKTLKDFEKGKIPLLISTDAAARGIDINGVK 561 Query 452 VVVRYGLLTNEISMVQARGR-ARADQSV--YAFVATEGSRELKRELINEALETLMEQAV- 507 V+ Y + + GR ARA ++ + F+ + + + + + +Q V Sbjct 562 CVINYDAPQYIRTYIHRVGRTARAGKAGLAFTFLLKVQEKRFLKMVSDAGSPGIQKQHVH 621 Query 508 AAVQKMDQAEYQAKIRDL 525 K ++ Y+ + +L Sbjct 622 PEALKSMESRYEQVLAEL 639 Score = 51.3 bits (121), Expect = 2e-05, Method: Composition-based stats. Identities = 24/127 (19%), Positives = 41/127 (32%), Gaps = 14/127 (11%) Query 20 IIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLV--NRVHLVTQHGEEFRRMLDGRW-T 76 + + PTG+GKT A + L +V L L Q F +G Sbjct 243 VCVSAPTGSGKTLAFVIPVVQALSKRVVRQVRALAVLPTKELAQQVSNVFSAYTEGSSLK 302 Query 77 VTTLSGDMGPRAGFGHLARCH--------DLLICTAELLQMALTSPEEEEHVELTVFSLI 128 V ++G A L+ D+++ T L + + L + Sbjct 303 VVMITGQKSFAAEQTALSEIRGGVSHSMADIVVATPGRLVDHIN---KNSSFSLQHLRFL 359 Query 129 VVDECHH 135 ++DE Sbjct 360 IIDEADR 366 >sp|Q4P331|IF4A_USTMA ATP-dependent RNA helicase eIF4A OS=Ustilago maydis (strain 521 / FGSC 9021) OX=237631 GN=TIF1 PE=3 SV=1 Length=411 Score = 97.6 bits (241), Expect = 3e-20, Method: Composition-based stats. Identities = 43/304 (14%), Positives = 103/304 (34%), Gaps = 28/304 (9%) Query 165 GLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRR 224 G TA+ ++D +I V L Q L ++ + C Sbjct 87 GKTATFSIAILQRIDPSIKAVQALILAPTRELAQQIQKVVIALGDYMKIDCHACIG---- 142 Query 225 SQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHL 284 G +++ M ++++ ++ + M ++ K + + + + Sbjct 143 -----GTNVREDMAKLNEGAQVVVGTPGRVYDMINRRAFKTDQLKMFCLDEADEMLSRGF 197 Query 285 RRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLAT- 343 + + L + VTK + R L+ + + Sbjct 198 KDQMYEVFQLLPQDTQCVLLSATMPQEVLEVTKKFMRDPIRILVKRDELTLEGIKQFYVA 257 Query 344 HGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLL 403 E+ KL+ L + + + + +IF TR+ L L ++ Sbjct 258 VEKEDWKLDTLCDL----YETVTITQAVIFCNTRRKVDWLTDKLTSRE------------ 301 Query 404 IGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI 463 S+ M Q ++ ++++F+ G+ +L+ T + G+D+ ++V+ Y L +N Sbjct 302 --FTVSAMHGDMEQAQREVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRE 359 Query 464 SMVQ 467 + + Sbjct 360 NYIH 363 Score = 51.3 bits (121), Expect = 2e-05, Method: Composition-based stats. Identities = 20/129 (16%), Positives = 44/129 (34%), Gaps = 6/129 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q I+P ++G ++I +G GKT + + +R ++ + ++L L Q + Sbjct 65 QARAIVPVIKGHDVIAQAQSGTGKTATFSIAILQRIDPSIKAVQALILAPTRELAQQIQK 124 Query 66 EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 + D G R L +++ T + + + Sbjct 125 VVIALGDYMKIDCHACIGGTNVREDMAKLNEGAQVVVGTPGRVYDMINRRA----FKTDQ 180 Query 125 FSLIVVDEC 133 + +DE Sbjct 181 LKMFCLDEA 189 >sp|Q4HY71|DBP5_GIBZE ATP-dependent RNA helicase DBP5 OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=DBP5 PE=3 SV=1 Length=488 Score = 98.3 bits (243), Expect = 3e-20, Method: Composition-based stats. Identities = 33/216 (15%), Positives = 76/216 (35%), Gaps = 32/216 (15%) Query 328 LALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWL 387 L + ++ + P++ M IL + + + +IF +TR SA + + Sbjct 279 LQRSELTVKGISQMFIDCPDD---NMKYDILCKLYGLMTIGQSVIFVKTRDSASEIERRM 335 Query 388 QQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDI 447 G S+ ++ ++ KF+ G +L+ T+V G+D+ Sbjct 336 VAD--------------GHKVSALHAAFDGAERDNLLTKFRQGENKVLITTNVLARGIDV 381 Query 448 PHCNVVVRYGLL--------TNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEA 498 ++V+ Y + + + + GR R + + + +A Sbjct 382 SSVSMVINYDIPMKGRGDTEPDAETYLHRIGRTGRFGRVGVSISFVYDKKSF------DA 435 Query 499 LETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRA 534 L + E + K+D ++ +++ RA Sbjct 436 LSKIAEMYGIDLVKLDTEDWDEAEERVKEVIKKNRA 471 Score = 49.0 bits (115), Expect = 1e-04, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 39/118 (33%), Gaps = 8/118 (7%) Query 18 KNIIIWLPTGAGKT--RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRW 75 +N++ +G GKT A +++ D + + L L Q GR+ Sbjct 115 RNMLAQSQSGTGKTAAFVTAILSRVDFSKPDQPQALALAPSRELARQIEGVI--NAIGRF 172 Query 76 TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC 133 P +++ T + + ++++ ++V+DE Sbjct 173 VENKKVAAAIPGVLPRGEPVRASVIVGTPGTVMDII----RRRQLDISQLRVLVLDEA 226 >sp|Q2U8K6|DBP5_ASPOR ATP-dependent RNA helicase dbp5 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=dbp5 PE=3 SV=1 Length=487 Score = 98.3 bits (243), Expect = 3e-20, Method: Composition-based stats. Identities = 33/201 (16%), Positives = 69/201 (34%), Gaps = 32/201 (16%) Query 352 EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ 411 E K L + + IIF +TR SA + + + G +S Sbjct 307 EDKYKTLVQLYGLLTVASSIIFVKTRASAAEIEKRMVAE--------------GHTVASL 352 Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT----------- 460 + + + VI +F+ G +L+ T+V G+D+ ++V+ Y + Sbjct 353 TGGIEGSQRDAVIDQFRAGQAKVLITTNVLARGIDVSTVSMVINYDIPELHQPGAPERQA 412 Query 461 NEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQ 519 + + + GR R + + E L + + +Q++D ++ Sbjct 413 DFQTYLHRIGRTGRFGRVGVSISFVSNREEW------NMLNQIQQYFNCTIQRVDTKDWD 466 Query 520 AKIRDLQQAALTKRAAQAAQR 540 +++ RA R Sbjct 467 EVEDIIKKTIKNTRAQAQFGR 487 >sp|Q0CDT1|DBP5_ASPTN ATP-dependent RNA helicase dbp5 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=dbp5 PE=3 SV=1 Length=487 Score = 98.3 bits (243), Expect = 3e-20, Method: Composition-based stats. Identities = 31/186 (17%), Positives = 67/186 (36%), Gaps = 29/186 (16%) Query 352 EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ 411 E + L + IIF +TRQSA + + + G +S Sbjct 307 EDKYRTLVSLYGLLTVGSSIIFVKTRQSAMEIEKRMVAE--------------GHTVASL 352 Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT----------- 460 + + + VI +F+ G +L+ T+V G+D+ ++V+ Y + Sbjct 353 TGGIEGSQRDAVIDQFRAGAAKVLITTNVLARGIDVSTVSMVINYDIPELHLPPNQPRQA 412 Query 461 NEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQ 519 + + + GR R + + E ++N+ ++ ++ + D E + Sbjct 413 DFQTYLHRIGRTGRFGRVGVSISFVSNRDE--WNMLNQ-IQKYFNTSIQRIDTKDWDEVE 469 Query 520 AKIRDL 525 I+ Sbjct 470 DIIKKT 475 >sp|Q5VRY0|RH39_ORYSJ DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0184500 PE=2 SV=1 Length=625 Score = 99.1 bits (245), Expect = 3e-20, Method: Composition-based stats. Identities = 40/208 (19%), Positives = 77/208 (37%), Gaps = 28/208 (13%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 KLE L ++L+ + N + ++F T S+ ++ +L + Q Sbjct 353 KLEALLQVLEPSLAKGN--KVMVFCNTLNSSRAVDHFLTENQ--------------ISTV 396 Query 410 SQSTHMTQRDQQEVIQKFQD--GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 + + ++ E + KF++ G LV T +A GLD+ + V+ + +N I + Sbjct 397 NYHGEVPAEERVENLNKFRNEEGDCPTLVCTDLAARGLDL-DVDHVIMFDFPSNSIDYLH 455 Query 468 ARGR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDL 525 GR AR + + L +E M++ + +A + Sbjct 456 RTGRTARMGAKGKVTSLVAKKDVTLATR-----IEEAMKKNESLEALTTNNVRRAAVN-- 508 Query 526 QQAALTKRAAQAAQRENQRQQFPVEHVQ 553 Q TK A + NQ+ + V Sbjct 509 PQYTSTKGRPSALKVVNQKGRRGVALQT 536 Score = 56.7 bits (135), Expect = 5e-07, Method: Composition-based stats. Identities = 34/209 (16%), Positives = 70/209 (33%), Gaps = 22/209 (11%) Query 22 IWLP--TGAGKTRAAAYVAKRHLETVDGA----------KVVVLVNRVHLVTQHGEEFRR 69 + L TG+GKT A + L + + VVL L Q + Sbjct 150 VVLGSHTGSGKTLAYLLPLVQLLRRDEAMLGMSMKPRRPRAVVLCPTRELTEQVFRVAKS 209 Query 70 ML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLI 128 + R+ T +SG R L D+++ T + + ++ ++ + Sbjct 210 ISHHARFRSTMVSGGSRIRPQEDSLNMPVDMVVGTPGRILDHI----KDGNMVYGDIKYL 265 Query 129 VVDECHHTHKDTVYNVIMSQYLELKLQR----AQPLPQVLGLTASPGTGGASKLDGAINH 184 V+DE T D + + ++L R Q + +TA+ +D Sbjct 266 VLDEA-DTMFDQGFGPDIRKFLAPLKNRAAKPGDQGFQTVLVTATMTKAVQKLIDEEFEG 324 Query 185 VLQLCANLDTWCIMSPQNCCPQLQEHSQQ 213 ++ L + + ++ +L + Sbjct 325 IVHLRTTTFQKRVATARHDFIKLSGSENK 353 >sp|Q2H4D0|SUB2_CHAGB ATP-dependent RNA helicase SUB2 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=SUB2 PE=3 SV=1 Length=434 Score = 97.6 bits (241), Expect = 3e-20, Method: Composition-based stats. Identities = 50/327 (15%), Positives = 101/327 (31%), Gaps = 37/327 (11%) Query 202 NCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQ 261 C + H+++ Q + R D+ + + E+ + T + Sbjct 118 ECSVLVMCHTRELAFQIRNEYNRFSKYMPDIKTGVFYGGTPIQKDAEVLKNKETHPHIIV 177 Query 262 V--VKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDF-----YHREH 314 +L+ L+ V L + L D R V + Sbjct 178 GTPGRLNALVRDKHLRLGNVRMFVLDECDKMLDQIDMRRDVQEIFRATPQQKQVMMFSAT 237 Query 315 VTKTQILCAERRLLALFDDRKNELAHLATHG--------PENPKLEMLEKILQRQFSSSN 366 + + + + +E L HG E K L ++L Sbjct 238 LADEIKPICRKFMQNPTEHYVDEDTKLTLHGLQQYYIPLEEREKNRKLNELLDEL----Q 293 Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + IIF ++ A L L++ + + ++Q ++ ++ Sbjct 294 FNQVIIFVKSTIRATELDKLLRECNFPSI--------------AVHSGVSQEERIRRYKE 339 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARA-DQSVYAFVATE 485 F++ + VAT V G+DI N+ + Y L + S + GRA A Sbjct 340 FKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLAISFVN 399 Query 486 GSRELKRELINEALETLMEQAVAAVQK 512 ++ + + + +E E A+ K Sbjct 400 SDQDKE---VLQQIEKRFEVALPEFPK 423 Score = 51.7 bits (122), Expect = 2e-05, Method: Composition-based stats. Identities = 44/268 (16%), Positives = 91/268 (34%), Gaps = 34/268 (13%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG-AKVVVLVNRVHLVTQ--- 62 Q I A+ G +II +G GKT + +E V G V+V+ + L Q Sbjct 77 QQTCIPQAMLGGDIICQAKSGLGKTAVFVLTTLQQVEPVAGECSVLVMCHTRELAFQIRN 136 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHD----LLICTAELLQMALTSPEEEE 118 F + + T G P + + + +++ T L AL ++ Sbjct 137 EYNRFSKYMPDIKTGVFYGG--TPIQKDAEVLKNKETHPHIIVGTPGRL-NAL---VRDK 190 Query 119 HVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKL 178 H+ L + V+DEC + + Q+ QV+ +A+ Sbjct 191 HLRLGNVRMFVLDECDKMLDQIDMRRDVQEIFRATPQQK----QVMMFSAT--------- 237 Query 179 DGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMD 238 + + +C + +L H Q + Y R ++ L +L+D Sbjct 238 --LADEIKPICRKFMQNPTEHYVDEDTKLTLHGLQ--QYYIPLEEREKN---RKLNELLD 290 Query 239 QIHDHLEMPELSRKFGTQMYEQQVVKLS 266 ++ + + + ++ + + + Sbjct 291 ELQFNQVIIFVKSTIRATELDKLLRECN 318 >sp|Q1EB38|DBP10_COCIM ATP-dependent RNA helicase DBP10 OS=Coccidioides immitis (strain RS) OX=246410 GN=DBP10 PE=3 SV=1 Length=927 Score = 99.5 bits (246), Expect = 3e-20, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 55/156 (35%), Gaps = 15/156 (10%) Query 333 DRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQG 392 + A G + K + E+ S IIF T+ + L++ Sbjct 328 EAGKHAREQAISGKSSKKRKRSEQNNPNPQESPTEHSTIIFVATKHHVDYIASLLRES-- 385 Query 393 LQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNV 452 G S + Q ++ + F+ G N+LV T VA G+DIP Sbjct 386 ------------GFAVSYAYGSLDQTARKIQVSNFRTGISNILVVTDVAARGIDIPILEN 433 Query 453 VVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGS 487 V+ Y + V GR ARA + +++ + Sbjct 434 VINYDFPSQAKIFVHRVGRTARAGRKGWSYSLVRDA 469 Score = 48.6 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 27/125 (22%), Positives = 51/125 (41%), Gaps = 8/125 (6%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRHLE---TVDGAKVVVLVNRVHLVTQHGEEFRRML 71 L+ ++++ TG+GKT A L+ T G++ ++L L Q + + + Sbjct 116 LDDQDVVGMARTGSGKTAAFVIPMIEKLKSHSTKVGSRGLILSPSRELALQTLKVVKELG 175 Query 72 DG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV 130 G L G FG++A D++I T + E +++L+ +V Sbjct 176 RGTDLKCVLLVGGDSLEEQFGYMAGNPDIIIATPGRFLH----LKVEMNLDLSSIKYVVF 231 Query 131 DECHH 135 DE Sbjct 232 DEADR 236 >sp|Q6FQU5|DHH1_CANGA ATP-dependent RNA helicase DHH1 OS=Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DHH1 PE=3 SV=1 Length=507 Score = 97.9 bits (242), Expect = 3e-20, Method: Composition-based stats. Identities = 59/356 (17%), Positives = 114/356 (32%), Gaps = 22/356 (6%) Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 SP A + +L N + P L++ + K L +++ Sbjct 55 SPIQEEAIPVAITGRDILARAKN---GTGKTAAFVIPTLEKIKPKLNKIQALIMVPTRE- 110 Query 229 FGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN 288 +++ + H + + GT + + + +L+E + RV L R+ Sbjct 111 LALQTSQVIRTLGRHCGVSCMVTTGGTNLRDDIL-RLNETVHVLVGTPGRVLDLASRKVA 169 Query 289 DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPEN 348 D L ++ +D + + + + + LF + Sbjct 170 D--LSECSLFVMDEADKMLSRDFKTIIEQVLTFLPKAHQSLLFSATFPLTVKEFMVKHLH 227 Query 349 PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI-----RAQLL 403 E+ L + + + F RQ H L + Q Q + R +LL Sbjct 228 KPYEI---NLMEELTLKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELL 284 Query 404 ------IGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG 457 +G M Q+D+ +V F+ G + LV + + G+DI NVV+ + Sbjct 285 AKKITDLGYSCYYSHARMKQQDRNKVFHDFRQGKVRTLVCSDLLTRGIDIQAVNVVINFD 344 Query 458 LLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQK 512 + + GR R A + I + L T + A + K Sbjct 345 FPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPATIDK 400 Score = 53.3 bits (126), Expect = 5e-06, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 49/131 (37%), Gaps = 10/131 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA---KVVVLVNRVHLVTQH 63 Q E I A+ G++I+ G GKT AA+V + + +++V L Q Sbjct 58 QEEAIPVAITGRDILARAKNGTGKT--AAFVIPTLEKIKPKLNKIQALIMVPTRELALQT 115 Query 64 GEEFRRMLDGRWTVTTL-SGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 + R + + +G R L +L+ T + + +L Sbjct 116 SQVIRTLGRHCGVSCMVTTGGTNLRDDILRLNETVHVLVGTPGRVLD----LASRKVADL 171 Query 123 TVFSLIVVDEC 133 + SL V+DE Sbjct 172 SECSLFVMDEA 182 >sp|A5DBI5|DBP5_PICGU ATP-dependent RNA helicase DBP5 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DBP5 PE=3 SV=1 Length=482 Score = 97.9 bits (242), Expect = 3e-20, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 63/173 (36%), Gaps = 21/173 (12%) Query 352 EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ 411 + ++L + IIF +T+ +A+ L ++ + G S Sbjct 315 KHKAEVLSELYGLLTIGSSIIFVKTKATANYLYAKMKSE--------------GHACSIL 360 Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL------TNEISM 465 + + ++ ++I F++G +L+ T+V G+DI ++VV Y + + + Sbjct 361 HSDLDNSERDKLIDDFREGRSKVLITTNVLARGIDIASVSMVVNYDIPVDKDDKPDPSTY 420 Query 466 VQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAE 517 + GR R + A + + + +E D+ E Sbjct 421 LHRIGRTGRFGRVGVAVSFVHDKKSYEDLEQIRSYFNDIEMTRVPTDDWDEVE 473 >sp|Q9Y7C4|ROK1_CANAL ATP-dependent RNA helicase CHR1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=CHR1 PE=3 SV=2 Length=578 Score = 98.3 bits (243), Expect = 3e-20, Method: Composition-based stats. Identities = 83/437 (19%), Positives = 157/437 (36%), Gaps = 48/437 (11%) Query 135 HTHKDTVYNVIMSQYLELKLQRAQPLPQVL---GLTASPGTGGASKLDGAINHVLQLCAN 191 H +K + N+I ++++E + + +P L L A TG L I V Q+ + Sbjct 137 HINKKVLSNLIDNEFVEPTPIQCESIPITLNNRDLIACAPTGSGKTLAFLIPLVQQILSK 196 Query 192 LDTW------CIMSPQNCCP----QLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIH 241 + I+SP N Q E + CKQ N+ Q + + Sbjct 197 NVSKNHGIRGLIISPTNELAVQIFQELEIITRGCKQINVAILSKQLASKLNNNIIKSSKY 256 Query 242 DHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIH-DTVRAV 300 D + L + +Q + LS+ L + +++ D +L H + Sbjct 257 DIIVSTPLRL---IDVVKQGNMDLSKIEQLIIDEADKLFDHGFAEQTDEILTHCTNPKIR 313 Query 301 DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNEL-AHLATHGPENPKLEMLEKILQ 359 ++ + E + + + R ++ + N + L G E KL + +++Q Sbjct 314 KSIFSATIPSSVEEMAHSIMKDPLRIIIGHKEAASNTIDQKLVFTGNEQGKLLAIRQMIQ 373 Query 360 RQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRD 419 + P IIF ++ A +L L T + Sbjct 374 Q---GEFKPPIIIFLQSITRAKAL--------------FHELLYDRLNVDVIHAERTPKQ 416 Query 420 QQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARAD---Q 476 ++EVI++F++G + +L+ T V G+D N+V+ Y + + + V GR Sbjct 417 REEVIKRFKNGDIWVLITTDVLARGVDFKGVNLVINYDVPQSAQAYVHRIGRTGRGGKAG 476 Query 477 SVYAFVATEGSRELKREL-------INEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAA 529 F E + +K L N+ ME +K + Q K ++Q+ Sbjct 477 KAVTFFTKEDDKAIKPILNVMKQSGCNDGYSQWMEDMGKLSKK---EKKQIKTHEIQRKK 533 Query 530 LTKRAAQAAQRENQRQQ 546 ++ Q+ QRQ Sbjct 534 ISTVPKVIKQKRKQRQD 550 Score = 54.8 bits (130), Expect = 2e-06, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 57/136 (42%), Gaps = 14/136 (10%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAY--VAKRHLETVDGA----KVVVLVNRVHLV 60 Q E I L +++I PTG+GKT A + ++ L + +++ L Sbjct 158 QCESIPITLNNRDLIACAPTGSGKTL-AFLIPLVQQILSKNVSKNHGIRGLIISPTNELA 216 Query 61 TQHGEEFRRMLDG--RWTVTTLSGDMGPRAGFGHLARC-HDLLICTAELLQMALTSPEEE 117 Q +E + G + V LS + + + +D+++ T L + ++ Sbjct 217 VQIFQELEIITRGCKQINVAILSKQLASKLNNNIIKSSKYDIIVSTPLRLIDVV----KQ 272 Query 118 EHVELTVFSLIVVDEC 133 +++L+ +++DE Sbjct 273 GNMDLSKIEQLIIDEA 288 >sp|Q95YF3|CGH1_CAEEL ATP-dependent RNA helicase cgh-1 OS=Caenorhabditis elegans OX=6239 GN=cgh-1 PE=1 SV=1 Length=430 Score = 97.2 bits (240), Expect = 4e-20, Method: Composition-based stats. Identities = 57/360 (16%), Positives = 107/360 (30%), Gaps = 27/360 (8%) Query 168 ASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQD 227 A G I + ++ L M + SQ + + Sbjct 85 ARAKNGTGKTGAYCIPVIEKIQPALKAIQAMVIVPTRELALQTSQICVELSKHIQLKVMV 144 Query 228 PFG-DLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR 286 G L+ + +++ + + + + E+ V K+ L + ++ + + Sbjct 145 TTGGTDLRDDIMRLNGTVHLVIATPGRILDLMEKGVAKMEHCKTLVLDEADKLLSQDFQG 204 Query 287 YNDALL-IHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG 345 D L+ R V +A + K E + + + + Sbjct 205 ILDRLINFLPKERQVMLYSATFPNTVTSFMQKHMHKPYE--INLMEELTLLGVTQYYAFV 262 Query 346 PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 E K+ L F + IIF + Q L + + IG Sbjct 263 QEKQKV----HCLNTLFRKLQINQSIIFCNSTQRVELLAKKITE--------------IG 304 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465 + M Q + V F+ G LV + + G+DI NVV+ + N + Sbjct 305 YSCYYIHSKMAQNHRNRVFHDFRQGNCRNLVCSDLLTRGIDIQAVNVVINFDFPRNAETY 364 Query 466 VQARGR-ARADQSVYAF-VATEGSRELKRELINEA---LETLMEQAVAAVQKMDQAEYQA 520 + GR R A + T R R + E +E + + + DQ A Sbjct 365 LHRIGRSGRFGHLGVAINLITYEDRHTLRRIEQELRTRIEPIPKTVDPKLYVADQQLVDA 424 Score = 40.2 bits (92), Expect = 0.056, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 45/126 (36%), Gaps = 14/126 (11%) Query 14 ALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVV---VLVNRVHLVTQ--HGEE-F 67 AL G++I+ G GKT AY + K + V+V L Q Sbjct 77 ALTGQDILARAKNGTGKT--GAYCIPVIEKIQPALKAIQAMVIVPTRELALQTSQICVEL 134 Query 68 RRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSL 127 + + + VT +G R L L+I T + + E+ ++ Sbjct 135 SKHIQLKVMVT--TGGTDLRDDIMRLNGTVHLVIATPGRILDLM----EKGVAKMEHCKT 188 Query 128 IVVDEC 133 +V+DE Sbjct 189 LVLDEA 194 >sp|A1CJT5|IF4A_ASPCL ATP-dependent RNA helicase eIF4A OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=tif1 PE=3 SV=1 Length=398 Score = 96.8 bits (239), Expect = 4e-20, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 47/118 (40%), Gaps = 14/118 (12%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K E L + + + +IF TR+ L L D + G Sbjct 247 KEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKL------TARDFTVSAMHG---- 296 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 M Q + ++++F+ G+ +L+AT + G+D+ ++V+ Y L N + + Sbjct 297 ----DMEQSQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIH 350 Score = 56.3 bits (134), Expect = 5e-07, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 44/129 (34%), Gaps = 6/129 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q IMP ++G ++I +G GKT + ++ + + ++L L Q + Sbjct 52 QQRAIMPIIKGSDVIAQAQSGTGKTATFSISALQKIDPNLKACQALILAPTRELAQQIQK 111 Query 66 EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 + D G R L +++ T +Q + + Sbjct 112 VVVAIGDFMSLECHACIGGTNVREDMKALQDGPQVVVGTPGRVQDMIQRRV----LRTDQ 167 Query 125 FSLIVVDEC 133 L ++DE Sbjct 168 MKLFILDEA 176 >sp|Q6BRE4|DBP5_DEBHA ATP-dependent RNA helicase DBP5 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DBP5 PE=3 SV=1 Length=493 Score = 97.9 bits (242), Expect = 4e-20, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 62/173 (36%), Gaps = 21/173 (12%) Query 352 EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ 411 ++L + IIF +T+ +A+ L ++++ G S Sbjct 326 NHKFEVLSELYGLLTIGSSIIFVKTKDTANILYAKMKKE--------------GHKCSIL 371 Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL------TNEISM 465 + ++ +I F++G +L+ T+V G+DI ++VV Y L + + Sbjct 372 HAGLETSERDRLIDDFREGRSKVLITTNVLARGIDIASVSMVVNYDLPVDQKGAPDPSTY 431 Query 466 VQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAE 517 + GR R + + + + + + +E D+ E Sbjct 432 LHRIGRTGRFGRVGVSISFVHDQKSYQDLMAIRSYFGNIEMTRVPTDDWDEVE 484 >sp|Q2UPY3|IF4A_ASPOR ATP-dependent RNA helicase eIF4A OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=tif1 PE=3 SV=1 Length=421 Score = 97.2 bits (240), Expect = 4e-20, Method: Composition-based stats. Identities = 38/217 (18%), Positives = 75/217 (35%), Gaps = 27/217 (12%) Query 251 RKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFY 310 R T +Q ++ ++ G EQ L + +++ D L F Sbjct 184 RVLKTDHLKQFILDEADEMLSRGFTEQIYDIFQLLPQSTQVVLLSATMPQDVLEVTTKFM 243 Query 311 HREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRG 370 +IL ++ L + K + K E L + + + Sbjct 244 RDP----VRILVKKQELT--LEGIKQFYIAVE-------KEEWKLDTLSDLYETVTITQA 290 Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 +IF TR+ L L D + G M Q + ++++F+ G Sbjct 291 VIFCNTRRKVDWLTDKL------TARDFTVSAMHG--------DMEQSQRDVIMKEFRSG 336 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 + +L+AT + G+D+ ++V+ Y L N + + Sbjct 337 SSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIH 373 Score = 54.4 bits (129), Expect = 2e-06, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 44/129 (34%), Gaps = 6/129 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q I P ++G ++I +G GKT + ++ V G + ++L L Q + Sbjct 75 QQRAIKPIIKGSDVIAQAQSGTGKTATFSISALQKLDPNVKGCQALILAPTRELAQQIQK 134 Query 66 EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 + D G R L ++++ T + + ++ Sbjct 135 VVVAIGDFMNITCHACIGGTAVREDMKALGEGPEVVVGTPGRVHDMIQRRV----LKTDH 190 Query 125 FSLIVVDEC 133 ++DE Sbjct 191 LKQFILDEA 199 >sp|Q0CXD0|IF4A_ASPTN ATP-dependent RNA helicase eIF4A OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=tif1 PE=3 SV=2 Length=396 Score = 96.8 bits (239), Expect = 4e-20, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 47/118 (40%), Gaps = 14/118 (12%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K E L + + + +IF TR+ L L D + G Sbjct 245 KEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKL------TARDFTVSAMHG---- 294 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 M Q + ++++F+ G+ +L+AT + G+D+ ++V+ Y L N + + Sbjct 295 ----DMEQSQRDIIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIH 348 Score = 52.5 bits (124), Expect = 7e-06, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 45/129 (35%), Gaps = 6/129 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q IMP ++G ++I +G GKT + ++ + + +++ L Q + Sbjct 50 QQRAIMPIIKGNDVIAQAQSGTGKTATFSISALQKIDPNLKACQALIVAPTRELAQQIQK 109 Query 66 EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 + D G R L +++ T +Q + ++ Sbjct 110 VVVAIGDFMNINCHACIGGTAIRDDMKALQEGPPIVVGTPGRIQDMIQRRV----LKTDQ 165 Query 125 FSLIVVDEC 133 L ++DE Sbjct 166 MKLFILDEA 174 >sp|Q7RV88|IF4A_NEUCR ATP-dependent RNA helicase eIF4A OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=tif-1 PE=3 SV=2 Length=397 Score = 96.8 bits (239), Expect = 4e-20, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 47/118 (40%), Gaps = 14/118 (12%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K E L + + + +IF TR+ L L D + G Sbjct 246 KEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKL------TARDFTVSAMHG---- 295 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 M Q + ++++F+ G+ +L+AT + G+D+ ++V+ Y L N + + Sbjct 296 ----DMDQAQRDLIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIH 349 Score = 57.5 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 46/129 (36%), Gaps = 6/129 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q IMP ++G ++I +G GKT + V ++ ++ + ++L L Q + Sbjct 51 QQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQKIDPSLKACQALILAPTRELAQQIQK 110 Query 66 EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 + D G R L +++ T + + ++ Sbjct 111 VVVAIGDFMNIECHACIGGTSVRDDMKALQDGPQVVVGTPGRVHDMIQRR----FLKTDS 166 Query 125 FSLIVVDEC 133 + V+DE Sbjct 167 MKMFVLDEA 175 >sp|A4QVP2|IF4A_PYRO7 ATP-dependent RNA helicase eIF4A OS=Pyricularia oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 GN=TIF1 PE=3 SV=1 Length=396 Score = 96.8 bits (239), Expect = 4e-20, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 47/118 (40%), Gaps = 14/118 (12%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K E L + + + +IF TR+ L L D + G Sbjct 245 KEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKL------TARDFTVSAMHG---- 294 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 M Q + ++++F+ G+ +L+AT + G+D+ ++V+ Y L N + + Sbjct 295 ----DMDQAQRDLIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIH 348 Score = 58.3 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 23/129 (18%), Positives = 45/129 (35%), Gaps = 6/129 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q IMP ++G ++I +G GKT + V ++ V + ++L L Q + Sbjct 50 QQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQKIDTNVKQCQALILAPTRELAQQIQK 109 Query 66 EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 + D G R L +++ T + + ++ Sbjct 110 VVVAIGDFMNIECHACIGGTSVRDDMKALQDGPQVVVGTPGRVHDMIQRR----FLKTDG 165 Query 125 FSLIVVDEC 133 + V+DE Sbjct 166 MKMFVLDEA 174 >sp|Q6C3X7|DBP5_YARLI ATP-dependent RNA helicase DBP5 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DBP5 PE=3 SV=1 Length=488 Score = 97.6 bits (241), Expect = 4e-20, Method: Composition-based stats. Identities = 32/180 (18%), Positives = 71/180 (39%), Gaps = 24/180 (13%) Query 352 EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ 411 E K+L+ +S +IF R +A++L + + G S Sbjct 321 EEKFKMLEELYSMLTIASSVIFVAQRSTANALYQRMSKN--------------GHKVSLL 366 Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT------NEISM 465 + ++ ++ ++ F+ G +L++T+V G+DI ++VV Y L T + + Sbjct 367 HSDLSVDERDRLMDDFRFGRSKVLISTNVIARGIDIATVSMVVNYDLPTDKNGKPDPETY 426 Query 466 VQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD 524 + GR R +S + + + ++++ + + V D E + I+ Sbjct 427 LHRIGRTGRFGRSGVSISFVHDEASFE---VLDSIQQSLGMTLTQVPTDDIDEVEEIIKK 483 >sp|Q641Y8|DDX1_RAT ATP-dependent RNA helicase DDX1 OS=Rattus norvegicus OX=10116 GN=Ddx1 PE=1 SV=1 Length=740 Score = 98.7 bits (244), Expect = 4e-20, Method: Composition-based stats. Identities = 32/155 (21%), Positives = 60/155 (39%), Gaps = 12/155 (8%) Query 342 ATHGPENPKL-EMLEKILQRQF-----SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQT 395 G +P++ KIL+ ++ + IIF RT+ +L + QQ G Sbjct 475 TRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFMQQGGGPD 534 Query 396 VDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVR 455 + ++++ +++F+ G + L+ T VA G+DI V+ Sbjct 535 KKGHQFSCV-----CLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVIN 589 Query 456 YGLLTNEISMVQARGR-ARADQSVYAFVATEGSRE 489 L + + V GR RA++ A +E Sbjct 590 VTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE 624 >sp|Q91VR5|DDX1_MOUSE ATP-dependent RNA helicase DDX1 OS=Mus musculus OX=10090 GN=Ddx1 PE=1 SV=1 Length=740 Score = 98.7 bits (244), Expect = 4e-20, Method: Composition-based stats. Identities = 32/155 (21%), Positives = 60/155 (39%), Gaps = 12/155 (8%) Query 342 ATHGPENPKL-EMLEKILQRQF-----SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQT 395 G +P++ KIL+ ++ + IIF RT+ +L + QQ G Sbjct 475 TRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFMQQGGGPD 534 Query 396 VDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVR 455 + ++++ +++F+ G + L+ T VA G+DI V+ Sbjct 535 KKGHQFSCV-----CLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVIN 589 Query 456 YGLLTNEISMVQARGR-ARADQSVYAFVATEGSRE 489 L + + V GR RA++ A +E Sbjct 590 VTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE 624 >sp|Q4R7L5|DDX1_MACFA ATP-dependent RNA helicase DDX1 OS=Macaca fascicularis OX=9541 GN=DDX1 PE=2 SV=1 Length=740 Score = 98.7 bits (244), Expect = 4e-20, Method: Composition-based stats. Identities = 32/155 (21%), Positives = 60/155 (39%), Gaps = 12/155 (8%) Query 342 ATHGPENPKL-EMLEKILQRQF-----SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQT 395 G +P++ KIL+ ++ + IIF RT+ +L + QQ G Sbjct 475 TRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFMQQGGGPD 534 Query 396 VDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVR 455 + ++++ +++F+ G + L+ T VA G+DI V+ Sbjct 535 KKGHQFSCV-----CLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVIN 589 Query 456 YGLLTNEISMVQARGR-ARADQSVYAFVATEGSRE 489 L + + V GR RA++ A +E Sbjct 590 VTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE 624 >sp|Q0IIK5|DDX1_BOVIN ATP-dependent RNA helicase DDX1 OS=Bos taurus OX=9913 GN=DDX1 PE=2 SV=1 Length=740 Score = 98.7 bits (244), Expect = 4e-20, Method: Composition-based stats. Identities = 32/155 (21%), Positives = 60/155 (39%), Gaps = 12/155 (8%) Query 342 ATHGPENPKL-EMLEKILQRQF-----SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQT 395 G +P++ KIL+ ++ + IIF RT+ +L + QQ G Sbjct 475 TRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFMQQGGGPD 534 Query 396 VDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVR 455 + ++++ +++F+ G + L+ T VA G+DI V+ Sbjct 535 KKGHQFSCV-----CLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVIN 589 Query 456 YGLLTNEISMVQARGR-ARADQSVYAFVATEGSRE 489 L + + V GR RA++ A +E Sbjct 590 VTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE 624 >sp|Q2H0R2|DBP10_CHAGB ATP-dependent RNA helicase DBP10 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=DBP10 PE=3 SV=1 Length=762 Score = 98.7 bits (244), Expect = 4e-20, Method: Composition-based stats. Identities = 32/125 (26%), Positives = 46/125 (37%), Gaps = 15/125 (12%) Query 363 SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE 422 IIFT T+ + L+ G S + Q ++ Sbjct 358 EKPTEHSTIIFTATKHHVEYIAHLLRHA--------------GFSVSYIYGSLDQTARKI 403 Query 423 VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF 481 + F+ G N+LV T VA G+DIP V+ Y V GR ARA Q +A+ Sbjct 404 QVDNFRRGRTNILVVTDVAARGIDIPVLANVINYDFPPQPKIFVHRVGRTARAGQRGWAY 463 Query 482 VATEG 486 +G Sbjct 464 ALLQG 468 Score = 49.0 bits (115), Expect = 1e-04, Method: Composition-based stats. Identities = 26/114 (23%), Positives = 42/114 (37%), Gaps = 8/114 (7%) Query 26 TGAGKTRAAAYVAKRHLETVD---GAKVVVLVNRVHLVTQHGEEFRRMLDGRWTVT-TLS 81 TG+GKT A L+ GA+ +++ L Q + + + G T L Sbjct 132 TGSGKTAAFVIPMIERLKAHSARVGARAIIMSPSRELALQTLKVVKELGKGTDLKTVLLV 191 Query 82 GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH 135 G FG +A D++I T + E + L+ +V DE Sbjct 192 GGDSLEEQFGLMAANPDIIIATPGRFLH----LKVEMSLNLSSVRYVVFDEADR 241 >sp|Q6BP45|ROK1_DEBHA ATP-dependent RNA helicase ROK1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=ROK1 PE=3 SV=2 Length=550 Score = 98.3 bits (243), Expect = 4e-20, Method: Composition-based stats. Identities = 44/302 (15%), Positives = 106/302 (35%), Gaps = 34/302 (11%) Query 256 QMYEQQVVKLSEAAALAGLQEQRVYAL-HLRRYNDALLIHDTVRAVDALAALQDFYHREH 314 + + + LS+ L + +++ + + ++ L + ++ + E Sbjct 251 DSIKNETISLSKVEQLVIDETDKLFDQGFVEQTDEILSNCTNTKLRKSMFSATIPSGVEE 310 Query 315 VTKTQILCAERRLLALFDDRKNELAH-LATHGPENPKLEMLEKILQRQFSSSNSPRGIIF 373 + ++ + R ++ + N + L G E KL + +++Q+ P IIF Sbjct 311 MAQSIMKDPIRVIIGHKEAASNTIEQKLVFTGNEEGKLLAIRQMIQQ---GEFKPPIIIF 367 Query 374 TRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN 433 ++ A +L L T + + EVI++F+ G + Sbjct 368 LQSITRAKAL--------------FHELLYDRLNVDVIHAERTPKQRDEVIKRFKSGDIW 413 Query 434 LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARAD---QSVYAFVATEGSREL 490 +L+ T V G+D N+V+ Y + + + V GR F E + + Sbjct 414 VLITTDVIARGVDFKGVNLVINYDVPQSAQAYVHRIGRTGRGGKAGKAVTFFTKEDDKAV 473 Query 491 KRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVE 550 K + + + ++ Y + D+ + + ++ ++Q V Sbjct 474 K-----PIINVMKQSGC-------ESGYSGWLEDMHKLSKNEKKDVKKHEIKRKQISTVP 521 Query 551 HV 552 + Sbjct 522 KI 523 Score = 58.3 bits (139), Expect = 2e-07, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 55/135 (41%), Gaps = 14/135 (10%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAY--VAKRHLETVDGAKV-----VVLVNRVHL 59 Q E I +LEG+++I PTG+GKT A + + L++ K +++ L Sbjct 141 QDEAIPISLEGRDLIACAPTGSGKTL-AFLIPLVQTILQSNPNVKNYGIRGLIISPTNEL 199 Query 60 VTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARC--HDLLICTAELLQMALTSPEEE 117 Q +E M G+ + + +D+L+ T L ++ + Sbjct 200 AVQIFQELNTMTKGKKMKIGILSKQLANKINNKIINSSKYDILVSTPLRLIDSIKNET-- 257 Query 118 EHVELTVFSLIVVDE 132 + L+ +V+DE Sbjct 258 --ISLSKVEQLVIDE 270 >sp|Q4WX43|IF4A_ASPFU ATP-dependent RNA helicase eIF4A OS=Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293) OX=330879 GN=tif1 PE=3 SV=1 Length=406 Score = 96.8 bits (239), Expect = 4e-20, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 47/118 (40%), Gaps = 14/118 (12%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K E L + + + +IF TR+ L L D + G Sbjct 247 KEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKL------TARDFTVSAMHG---- 296 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 M Q + ++++F+ G+ +L+AT + G+D+ ++V+ Y L N + + Sbjct 297 ----DMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIH 350 Score = 56.0 bits (133), Expect = 6e-07, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 45/129 (35%), Gaps = 6/129 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q I+P ++G ++I +G GKT + ++ V G + ++L L Q + Sbjct 52 QQRAILPIIKGNDVIAQAQSGTGKTATFSISALQKLDPNVKGCQALILAPTRELAQQIQK 111 Query 66 EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 + D G R L +++ T +Q + + Sbjct 112 VVVAIGDFMNIECHACIGGTNVREDMKALQEGPQVVVGTPGRVQDMIQRRV----LRTDN 167 Query 125 FSLIVVDEC 133 + ++DE Sbjct 168 LKMFILDEA 176 >sp|A3BT52|RH29_ORYSJ DEAD-box ATP-dependent RNA helicase 29 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0416100 PE=2 SV=2 Length=851 Score = 99.1 bits (245), Expect = 4e-20, Method: Composition-based stats. Identities = 73/380 (19%), Positives = 123/380 (32%), Gaps = 57/380 (15%) Query 242 DHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVY-------ALHLRRYNDALLIH 294 ++S G E Q +L+E + R+ L+LR + Sbjct 143 GKFTDLKISLIVGGDSMESQFEELAENPDIIIATPGRLVHHLAEVEDLNLRTVEYVVFDE 202 Query 295 -DTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELA-----HLATHGPEN 348 D++ ++ + L D H+ T+ +L + AL D K L L + Sbjct 203 ADSLFSLGLIQQLHDILHKLSDTRQTLLFSATLPQALADFAKAGLRDPQIVRLDLDKKIS 262 Query 349 P-------------KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQT 395 P KL L +++ S+ + IIF T+ L + +++ Sbjct 263 PDLKLAFFTLRQEEKLAALLYLVRE--RISSEEQTIIFVSTKHHVEFLNILFREE----- 315 Query 396 VDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVR 455 G S M Q + I KF+ +L+ T VA GLDIP + VV Sbjct 316 ---------GLEPSLSYGAMDQEARNIHISKFRARKTMILIVTDVAARGLDIPLLDNVVN 366 Query 456 YGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMD 514 + V GR AR +S A+ ++ L + A Sbjct 367 WDFPAKPKLFVHRVGRVARQGRSGTAYTFVTSEDMAYLLDLHLFLSKPLRPAPTE----- 421 Query 515 QAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQLLCINCMVAVGHGSDLRKVEG 574 + ++D++ L A A E +FP + L+ + +DL +E Sbjct 422 ----EELLKDMEGMNLKIDRALANG-ETVYGRFPQTIIDLVSDGIKEVINGCTDLIALEK 476 Query 575 THHVNVNPNFSNYYNVSRDP 594 F Y P Sbjct 477 P----CTNAFHLYLKTRPMP 492 Score = 58.7 bits (140), Expect = 2e-07, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 81/220 (37%), Gaps = 16/220 (7%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA---KVVVLVNRVHLVTQ---HGEEFR 68 L G +I TG+GKT A + L D + ++L L TQ ++ Sbjct 84 LAGHDIAAMARTGSGKTAAFLVPMIQRLRRHDAGAGIRALILSPTRDLATQTLKFAQQLG 143 Query 69 RMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLI 128 + D + ++ + G + F LA D++I T L L E+ + L + Sbjct 144 KFTDLK--ISLIVGGDSMESQFEELAENPDIIIATPGRLVHHLAEVED---LNLRTVEYV 198 Query 129 VVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQL 188 V DE D+++++ + Q L L + Q L +A+ A + + Sbjct 199 VFDEA-----DSLFSLGLIQQLHDILHKLSDTRQTLLFSATLPQALADFAKAGLRDPQIV 253 Query 189 CANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 +LD + L++ + Y + R S + Sbjct 254 RLDLDKKISPDLKLAFFTLRQEEKLAALLYLVRERISSEE 293 >sp|Q94BV4|RH6_ARATH DEAD-box ATP-dependent RNA helicase 6 OS=Arabidopsis thaliana OX=3702 GN=RH6 PE=2 SV=2 Length=528 Score = 97.9 bits (242), Expect = 4e-20, Method: Composition-based stats. Identities = 52/376 (14%), Positives = 115/376 (31%), Gaps = 34/376 (9%) Query 147 SQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG--------AINHVLQLCANLDTWCIM 198 + + + + +P + LT S A G + + + ++ Sbjct 172 KGFEKPSPIQEESIP--IALTGSDILARAKNGTGKTGAFCIPTLEKIDPENNVIQAVILV 229 Query 199 SPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMY 258 + Q + ++ K + + G L+ + +++ + + + + Sbjct 230 PTRELALQTSQVCKELSKYLKIEVMVTTG--GTSLRDDIMRLYQPVHLLVGTPGRILDLA 287 Query 259 EQQVVKLSEAAALAGLQEQRVYALHLRRYNDALL-IHDTVRAVDALAALQDFYHREHVTK 317 ++ V L + A L + ++ ++ + + L+ R + +A + K Sbjct 288 KKGVCVLKDCAMLVMDEADKLLSVEFQPSIEELIQFLPESRQILMFSATFPVTVKSF--K 345 Query 318 TQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTR 377 + L + + + E K+ L FS + IIF + Sbjct 346 DRYLKKPYIINLMDQLTLMGVTQYYAFVEERQKV----HCLNTLFSKLQINQSIIFCNSV 401 Query 378 QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA 437 L + + +G M Q + V F++G LV Sbjct 402 NRVELLAKKITE--------------LGYSCFYIHAKMVQDHRNRVFHDFRNGACRNLVC 447 Query 438 TSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELIN 496 T + G+DI NVV+ + S + GR R A K Sbjct 448 TDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKMYQTE 507 Query 497 EALETLMEQAVAAVQK 512 + L T ++ + + K Sbjct 508 QELGTEIKPIPSLIDK 523 Score = 49.4 bits (116), Expect = 9e-05, Method: Composition-based stats. Identities = 30/131 (23%), Positives = 50/131 (38%), Gaps = 10/131 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE 65 Q E I AL G +I+ G GKT A ++ + + V+LV L Q + Sbjct 181 QEESIPIALTGSDILARAKNGTGKTGAFCIPTLEKIDPENNVIQAVILVPTRELALQTSQ 240 Query 66 EFR---RMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 + + L VT +G R L + LL+ T + ++ L Sbjct 241 VCKELSKYLKIEVMVT--TGGTSLRDDIMRLYQPVHLLVGTPGRILD----LAKKGVCVL 294 Query 123 TVFSLIVVDEC 133 +++V+DE Sbjct 295 KDCAMLVMDEA 305 >sp|A1D7N3|IF4A_NEOFI ATP-dependent RNA helicase eIF4A OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=tif1 PE=3 SV=1 Length=398 Score = 96.4 bits (238), Expect = 4e-20, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 47/118 (40%), Gaps = 14/118 (12%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K E L + + + +IF TR+ L L D + G Sbjct 247 KEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKL------TARDFTVSAMHG---- 296 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 M Q + ++++F+ G+ +L+AT + G+D+ ++V+ Y L N + + Sbjct 297 ----DMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIH 350 Score = 56.0 bits (133), Expect = 6e-07, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 45/129 (35%), Gaps = 6/129 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q I+P ++G ++I +G GKT + ++ V G + ++L L Q + Sbjct 52 QQRAILPIIKGNDVIAQAQSGTGKTATFSISALQKLDPNVKGCQALILAPTRELAQQIQK 111 Query 66 EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 + D G R L +++ T +Q + + Sbjct 112 VVVAIGDFMNIECHACIGGTNVREDMKALQEGPQVVVGTPGRVQDMIQRRV----LRTDN 167 Query 125 FSLIVVDEC 133 + ++DE Sbjct 168 LKMFILDEA 176 >sp|Q5RKI1|IF4A2_RAT Eukaryotic initiation factor 4A-II OS=Rattus norvegicus OX=10116 GN=Eif4a2 PE=1 SV=1 Length=407 Score = 96.8 bits (239), Expect = 5e-20, Method: Composition-based stats. Identities = 33/221 (15%), Positives = 79/221 (36%), Gaps = 28/221 (13%) Query 248 ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRA-VDALAAL 306 L+R++ + + + V L+ + ++Y + + ++ + D L Sbjct 166 MLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVT 225 Query 307 QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSN 366 + F + + F KL+ L + + + Sbjct 226 KKFMRDPIRILVKKEELTLEGIKQFYINVEREEW---------KLDTLCDL----YETLT 272 Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + +IF TR+ L + + D L G M Q+++ ++++ Sbjct 273 ITQAVIFLNTRRKVDWLT------EKMHARDFTVSALHG--------DMDQKERDVIMRE 318 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 F+ G+ +L+ T + G+D+ ++V+ Y L TN + + Sbjct 319 FRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIH 359 Score = 50.6 bits (119), Expect = 3e-05, Method: Composition-based stats. Identities = 32/166 (19%), Positives = 58/166 (35%), Gaps = 12/166 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLET-VDGAKVVVLVNRVHLVTQHGE 65 Q I+P ++G ++I +G GKT A + LE + +VL L Q + Sbjct 60 QQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQK 119 Query 66 EFRRMLDGRWTVTTLS-GDMGPRAGFGHL-ARCHDLLICTAELLQMALTSPEEEEHVELT 123 + D G R L A +++ T + L ++ Sbjct 120 VILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRR----YLSPK 175 Query 124 VFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS 169 + V+DE D + + + Q+ QV+ L+A+ Sbjct 176 WIKMFVLDEA-----DEMLSRGFKDQIYEIFQKLNTSIQVVLLSAT 216 >sp|Q5R4X1|IF4A2_PONAB Eukaryotic initiation factor 4A-II OS=Pongo abelii OX=9601 GN=EIF4A2 PE=2 SV=1 Length=407 Score = 96.8 bits (239), Expect = 5e-20, Method: Composition-based stats. Identities = 33/221 (15%), Positives = 79/221 (36%), Gaps = 28/221 (13%) Query 248 ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRA-VDALAAL 306 L+R++ + + + V L+ + ++Y + + ++ + D L Sbjct 166 MLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVT 225 Query 307 QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSN 366 + F + + F KL+ L + + + Sbjct 226 KKFMRDPIRILVKKEELTLEGIKQFYINVEREEW---------KLDTLCDL----YETLT 272 Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + +IF TR+ L + + D L G M Q+++ ++++ Sbjct 273 ITQAVIFLNTRRKVDWLT------EKMHARDFTVSALHG--------DMDQKERDVIMRE 318 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 F+ G+ +L+ T + G+D+ ++V+ Y L TN + + Sbjct 319 FRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIH 359 Score = 50.6 bits (119), Expect = 3e-05, Method: Composition-based stats. Identities = 32/166 (19%), Positives = 58/166 (35%), Gaps = 12/166 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLET-VDGAKVVVLVNRVHLVTQHGE 65 Q I+P ++G ++I +G GKT A + LE + +VL L Q + Sbjct 60 QQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQK 119 Query 66 EFRRMLDGRWTVTTLS-GDMGPRAGFGHL-ARCHDLLICTAELLQMALTSPEEEEHVELT 123 + D G R L A +++ T + L ++ Sbjct 120 VILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRR----YLSPK 175 Query 124 VFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS 169 + V+DE D + + + Q+ QV+ L+A+ Sbjct 176 WIKMFVLDEA-----DEMLSRGFKDQIYEIFQKLNTSIQVVLLSAT 216 >sp|P10630|IF4A2_MOUSE Eukaryotic initiation factor 4A-II OS=Mus musculus OX=10090 GN=Eif4a2 PE=1 SV=2 Length=407 Score = 96.8 bits (239), Expect = 5e-20, Method: Composition-based stats. Identities = 33/221 (15%), Positives = 79/221 (36%), Gaps = 28/221 (13%) Query 248 ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRA-VDALAAL 306 L+R++ + + + V L+ + ++Y + + ++ + D L Sbjct 166 MLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVT 225 Query 307 QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSN 366 + F + + F KL+ L + + + Sbjct 226 KKFMRDPIRILVKKEELTLEGIKQFYINVEREEW---------KLDTLCDL----YETLT 272 Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + +IF TR+ L + + D L G M Q+++ ++++ Sbjct 273 ITQAVIFLNTRRKVDWLT------EKMHARDFTVSALHG--------DMDQKERDVIMRE 318 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 F+ G+ +L+ T + G+D+ ++V+ Y L TN + + Sbjct 319 FRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIH 359 Score = 50.6 bits (119), Expect = 3e-05, Method: Composition-based stats. Identities = 32/166 (19%), Positives = 58/166 (35%), Gaps = 12/166 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLET-VDGAKVVVLVNRVHLVTQHGE 65 Q I+P ++G ++I +G GKT A + LE + +VL L Q + Sbjct 60 QQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQK 119 Query 66 EFRRMLDGRWTVTTLS-GDMGPRAGFGHL-ARCHDLLICTAELLQMALTSPEEEEHVELT 123 + D G R L A +++ T + L ++ Sbjct 120 VILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRR----YLSPK 175 Query 124 VFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS 169 + V+DE D + + + Q+ QV+ L+A+ Sbjct 176 WIKMFVLDEA-----DEMLSRGFKDQIYEIFQKLNTSIQVVLLSAT 216 >sp|Q14240|IF4A2_HUMAN Eukaryotic initiation factor 4A-II OS=Homo sapiens OX=9606 GN=EIF4A2 PE=1 SV=2 Length=407 Score = 96.8 bits (239), Expect = 5e-20, Method: Composition-based stats. Identities = 33/221 (15%), Positives = 79/221 (36%), Gaps = 28/221 (13%) Query 248 ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRA-VDALAAL 306 L+R++ + + + V L+ + ++Y + + ++ + D L Sbjct 166 MLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVT 225 Query 307 QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSN 366 + F + + F KL+ L + + + Sbjct 226 KKFMRDPIRILVKKEELTLEGIKQFYINVEREEW---------KLDTLCDL----YETLT 272 Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + +IF TR+ L + + D L G M Q+++ ++++ Sbjct 273 ITQAVIFLNTRRKVDWLT------EKMHARDFTVSALHG--------DMDQKERDVIMRE 318 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 F+ G+ +L+ T + G+D+ ++V+ Y L TN + + Sbjct 319 FRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIH 359 Score = 50.6 bits (119), Expect = 3e-05, Method: Composition-based stats. Identities = 32/166 (19%), Positives = 58/166 (35%), Gaps = 12/166 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLET-VDGAKVVVLVNRVHLVTQHGE 65 Q I+P ++G ++I +G GKT A + LE + +VL L Q + Sbjct 60 QQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQK 119 Query 66 EFRRMLDGRWTVTTLS-GDMGPRAGFGHL-ARCHDLLICTAELLQMALTSPEEEEHVELT 123 + D G R L A +++ T + L ++ Sbjct 120 VILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRR----YLSPK 175 Query 124 VFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS 169 + V+DE D + + + Q+ QV+ L+A+ Sbjct 176 WIKMFVLDEA-----DEMLSRGFKDQIYEIFQKLNTSIQVVLLSAT 216 >sp|Q3SZ65|IF4A2_BOVIN Eukaryotic initiation factor 4A-II OS=Bos taurus OX=9913 GN=EIF4A2 PE=2 SV=1 Length=407 Score = 96.8 bits (239), Expect = 5e-20, Method: Composition-based stats. Identities = 33/221 (15%), Positives = 79/221 (36%), Gaps = 28/221 (13%) Query 248 ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRA-VDALAAL 306 L+R++ + + + V L+ + ++Y + + ++ + D L Sbjct 166 MLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVT 225 Query 307 QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSN 366 + F + + F KL+ L + + + Sbjct 226 KKFMRDPIRILVKKEELTLEGIKQFYINVEREEW---------KLDTLCDL----YETLT 272 Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + +IF TR+ L + + D L G M Q+++ ++++ Sbjct 273 ITQAVIFLNTRRKVDWLT------EKMHARDFTVSALHG--------DMDQKERDVIMRE 318 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 F+ G+ +L+ T + G+D+ ++V+ Y L TN + + Sbjct 319 FRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIH 359 Score = 50.6 bits (119), Expect = 3e-05, Method: Composition-based stats. Identities = 32/166 (19%), Positives = 58/166 (35%), Gaps = 12/166 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLET-VDGAKVVVLVNRVHLVTQHGE 65 Q I+P ++G ++I +G GKT A + LE + +VL L Q + Sbjct 60 QQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQK 119 Query 66 EFRRMLDGRWTVTTLS-GDMGPRAGFGHL-ARCHDLLICTAELLQMALTSPEEEEHVELT 123 + D G R L A +++ T + L ++ Sbjct 120 VILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRR----YLSPK 175 Query 124 VFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS 169 + V+DE D + + + Q+ QV+ L+A+ Sbjct 176 WIKMFVLDEA-----DEMLSRGFKDQIYEIFQKLNTSIQVVLLSAT 216 >sp|Q5B948|IF4A_EMENI ATP-dependent RNA helicase eIF4A OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=tif1 PE=3 SV=2 Length=398 Score = 96.4 bits (238), Expect = 5e-20, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 47/118 (40%), Gaps = 14/118 (12%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K E L + + + +IF TR+ L L D + G Sbjct 247 KEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKL------TARDFTVSAMHG---- 296 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 M Q + ++++F+ G+ +L+AT + G+D+ ++V+ Y L N + + Sbjct 297 ----DMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIH 350 Score = 51.7 bits (122), Expect = 1e-05, Method: Composition-based stats. Identities = 19/129 (15%), Positives = 44/129 (34%), Gaps = 6/129 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q I+P ++G ++I +G GKT + ++ V + +++ L Q + Sbjct 52 QQRAILPIVKGNDVIAQAQSGTGKTATFSISALQKLDPNVKACQALIVAPTRELAQQIQK 111 Query 66 EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 + D G R L +++ T + + ++ Sbjct 112 VVIAIGDFMNIQCHACIGGTAVRDDMNALREGPQIVVGTPGRIHDMIQRRV----LKTDQ 167 Query 125 FSLIVVDEC 133 + ++DE Sbjct 168 MKMFILDEA 176 >sp|Q4WWD3|DHH1_ASPFU ATP-dependent RNA helicase dhh1 OS=Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293) OX=330879 GN=dhh1 PE=3 SV=1 Length=507 Score = 97.6 bits (241), Expect = 5e-20, Method: Composition-based stats. Identities = 52/313 (17%), Positives = 99/313 (32%), Gaps = 31/313 (10%) Query 234 KKLMDQI---HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDA 290 LMD I +D + + + + + V LSE + ++ + + Sbjct 153 TGLMDDIIRLNDAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQ 212 Query 291 LL-IHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENP 349 LL H R V +A + K + + + + + + E Sbjct 213 LLSFHPKDRQVMLFSATFPLIVKSF--KDKHMRNPYEINLMDELTLRGITQYYAFVEEKQ 270 Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ L FS + IIF + L + + +G Sbjct 271 KV----HCLNTLFSKLQINQSIIFCNSTNRVELLAKKITE--------------LGYSCF 312 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 M Q+ + V F++G LV + + G+DI NVV+ + N + + Sbjct 313 YSHARMLQQHRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRI 372 Query 470 GR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQA 528 GR R A R + + + L + Q +D+ Y + D + Sbjct 373 GRSGRFGHLGLAINLINWD---DRFNLYKIEQELGTEIQPIPQNIDKKLY---VYDSPET 426 Query 529 ALTKRAAQAAQRE 541 + + QR+ Sbjct 427 IPRPISNPSQQRQ 439 Score = 50.6 bits (119), Expect = 4e-05, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 47/131 (36%), Gaps = 10/131 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA---KVVVLVNRVHLVTQH 63 Q E I AL G++I+ G GKT AA+V + + ++LV L Q Sbjct 74 QEETIPVALTGRDILARAKNGTGKT--AAFVIPTLERINPKSTKTQALILVPTRELALQT 131 Query 64 GEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 + + + V +G G L +L+ T + + +L Sbjct 132 SQVCKTLGKHLGINVMVTTGGTGLMDDIIRLNDAVHILVGTPGRVLD----LASKGVADL 187 Query 123 TVFSLIVVDEC 133 + V+DE Sbjct 188 SECPTFVMDEA 198 >sp|A2YV85|RH29_ORYSI DEAD-box ATP-dependent RNA helicase 29 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_028228 PE=2 SV=2 Length=851 Score = 98.7 bits (244), Expect = 5e-20, Method: Composition-based stats. Identities = 57/269 (21%), Positives = 93/269 (35%), Gaps = 43/269 (16%) Query 242 DHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVY-------ALHLRRYNDALLIH 294 ++S G E Q +L+E + R+ L+LR + Sbjct 143 GKFTDLKISLIVGGDSMESQFEELAENPDIIIATPGRLVHHLAEVEDLNLRTVEYVVFDE 202 Query 295 -DTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELA-----HLATHGPEN 348 D++ ++ + L D H+ T+ +L + AL D K L L + Sbjct 203 ADSLFSLGLIQQLHDILHKLSDTRQTLLFSATLPQALADFAKAGLRDPQIVRLDLDKKIS 262 Query 349 P-------------KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQT 395 P KL L +++ S+ + IIF T+ L + +++ Sbjct 263 PDLKLAFFTLRQEEKLAALLYLVRE--RISSEEQTIIFVSTKHHVEFLNILFREE----- 315 Query 396 VDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVR 455 G S M Q + I KF+ +L+ T VA GLDIP + VV Sbjct 316 ---------GLEPSLSYGAMDQEARNIHISKFRARKTMILIVTDVAARGLDIPLLDNVVN 366 Query 456 YGLLTNEISMVQARGR-ARADQSVYAFVA 483 + V GR AR +S A+ Sbjct 367 WDFPAKPKLFVHRVGRVARQGRSGTAYTF 395 Score = 58.7 bits (140), Expect = 1e-07, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 81/220 (37%), Gaps = 16/220 (7%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA---KVVVLVNRVHLVTQ---HGEEFR 68 L G +I TG+GKT A + L D + ++L L TQ ++ Sbjct 84 LAGHDIAAMARTGSGKTAAFLVPMIQRLRRHDAGAGIRALILSPTRDLATQTLKFAQQLG 143 Query 69 RMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLI 128 + D + ++ + G + F LA D++I T L L E+ + L + Sbjct 144 KFTDLK--ISLIVGGDSMESQFEELAENPDIIIATPGRLVHHLAEVED---LNLRTVEYV 198 Query 129 VVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQL 188 V DE D+++++ + Q L L + Q L +A+ A + + Sbjct 199 VFDEA-----DSLFSLGLIQQLHDILHKLSDTRQTLLFSATLPQALADFAKAGLRDPQIV 253 Query 189 CANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 +LD + L++ + Y + R S + Sbjct 254 RLDLDKKISPDLKLAFFTLRQEEKLAALLYLVRERISSEE 293 >sp|O49289|RH29_ARATH Putative DEAD-box ATP-dependent RNA helicase 29 OS=Arabidopsis thaliana OX=3702 GN=RH29 PE=3 SV=1 Length=845 Score = 98.7 bits (244), Expect = 5e-20, Method: Composition-based stats. Identities = 64/420 (15%), Positives = 133/420 (32%), Gaps = 64/420 (15%) Query 204 CPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVV 263 +L++H P + K ++ +S G E Q Sbjct 87 LEKLKQHV--PQGGVRALILSPTRDLAEQTLKFTKEL-GKFTDLRVSLLVGGDSMEDQFE 143 Query 264 KLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRA-VDALAALQDFYHREHVTKTQILC 322 +L++ + R+ +HL D + + D +L E + + Sbjct 144 ELTKGPDVIIATPGRL--MHLLSEVDDMTLRTVEYVVFDEADSLFGMGFAEQLHQILTQL 201 Query 323 AERRLLALFDD--------------RKNELAHLATHGPENP-------------KLEMLE 355 +E R LF R+ +L L +P K L Sbjct 202 SENRQTLLFSATLPSALAEFAKAGLREPQLVRLDVENKISPDLKLSFLTVRPEEKYSALL 261 Query 356 KILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHM 415 +++ S+ + +IF T+ + + +I + G M Sbjct 262 YLVREHI--SSDQQTLIFVSTKHHVEFVNSL------FKLENIEPSVCYG--------DM 305 Query 416 TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA 474 Q ++ + +F+ LL+ T +A G+DIP + V+ + V GR ARA Sbjct 306 DQDARKIHVSRFRARKTMLLIVTDIAARGIDIPLLDNVINWDFPPRPKIFVHRVGRAARA 365 Query 475 DQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRA 534 ++ A+ + E + +++ + + + A + ++ + +TK + Sbjct 366 GRTGCAYSF----------VTPEDMPYMLDLHLFLSKPVRPAPTEDEVLKNMEEVMTKTS 415 Query 535 AQAAQRENQRQQFPVEHVQLLCINCMVAVGHGSDLRKVEGTHHVNVNPNFSNYYNVSRDP 594 +FP + + L+ + ++L +E T F Y P Sbjct 416 QAIDSGVTVYGRFPQKTIDLIFNRTREMIDSSAELDSLERTS----TKAFRLYSKTKPSP 471 Score = 54.0 bits (128), Expect = 4e-06, Method: Composition-based stats. Identities = 30/126 (24%), Positives = 51/126 (40%), Gaps = 13/126 (10%) Query 15 LEGKNIIIWLPTGAGKTRAAAYV-AKRHLET---VDGAKVVVLVNRVHLVTQ---HGEEF 67 L G +++ TG+GKT AA + L+ G + ++L L Q +E Sbjct 63 LSGVDVVAMARTGSGKT-AAFLIPMLEKLKQHVPQGGVRALILSPTRDLAEQTLKFTKEL 121 Query 68 RRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSL 127 + D R ++ L G F L + D++I T L L+ ++ + L Sbjct 122 GKFTDLRVSL--LVGGDSMEDQFEELTKGPDVIIATPGRLMHLLSEVDD---MTLRTVEY 176 Query 128 IVVDEC 133 +V DE Sbjct 177 VVFDEA 182 >sp|Q5BFU7|DBP10_EMENI ATP-dependent RNA helicase dbp10 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=dbp10 PE=3 SV=1 Length=936 Score = 98.7 bits (244), Expect = 5e-20, Method: Composition-based stats. Identities = 35/153 (23%), Positives = 57/153 (37%), Gaps = 19/153 (12%) Query 340 HLATHGPENPKLEMLEKILQR----QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQT 395 L GPE+ K + ++ S I+F T+ L L++ Sbjct 342 RLKEKGPEDSKNKKRKRAEMERAVNMKESPTKHSTIVFAATKHHVDYLYSLLREA----- 396 Query 396 VDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVR 455 G S + Q ++ +Q F+ G N+LV T VA G+DIP V+ Sbjct 397 ---------GFAVSYVYGSLDQTARKIQVQNFRTGISNILVVTDVAARGIDIPILANVIN 447 Query 456 YGLLTNEISMVQARGR-ARADQSVYAFVATEGS 487 Y + V GR ARA + +++ + Sbjct 448 YDFPSQPKIFVHRVGRTARAGRKGWSYSLVRDA 480 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 27/125 (22%), Positives = 50/125 (40%), Gaps = 8/125 (6%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVD---GAKVVVLVNRVHLVTQHGEEFRRML 71 +E ++++ TG+GKT A L++ GA+ ++L L Q + + + Sbjct 126 MEDQDVVGMARTGSGKTAAFVIPMIEKLKSHSTKFGARGLILSPSRELALQTLKVVKELG 185 Query 72 DG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV 130 G L G FG +A D++I T + E +++L+ +V Sbjct 186 KGTDLKSVLLVGGDSLEEQFGMMAGNPDIVIATPGRFLH----LKVEMNLDLSSIKYVVF 241 Query 131 DECHH 135 DE Sbjct 242 DEADR 246 >sp|A3GH91|DBP5_PICST ATP-dependent RNA helicase DBP5 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) OX=322104 GN=DBP5 PE=3 SV=2 Length=500 Score = 97.6 bits (241), Expect = 5e-20, Method: Composition-based stats. Identities = 33/188 (18%), Positives = 69/188 (37%), Gaps = 27/188 (14%) Query 345 GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI 404 E K E+L ++ + IIF + +A+ L ++ + Sbjct 330 DSEKHKFEVLCEL----YGLLTIGSSIIFVERKDTANLLYAKMKAE-------------- 371 Query 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT---- 460 G S + ++ +I F++G +L+ T+V G+DI ++VV Y L T Sbjct 372 GHACSILHGGLETSERDRLIDDFREGRSKVLITTNVLARGIDIASVSMVVNYDLPTDKDG 431 Query 461 --NEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAE 517 + + + GR R + + R E++ + + + V D E Sbjct 432 NADPSTYLHRIGRTGRFGRVGVSISFIYDKRSY--EILMKIKDYFGNVEMTRVPTDDWDE 489 Query 518 YQAKIRDL 525 + ++ + Sbjct 490 VEKIVKKV 497 >sp|Q4HZ42|DBP10_GIBZE ATP-dependent RNA helicase DBP10 OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=DBP10 PE=3 SV=1 Length=897 Score = 98.7 bits (244), Expect = 5e-20, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 45/125 (36%), Gaps = 15/125 (12%) Query 363 SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE 422 IIFT T+ L L + G S + Q ++ Sbjct 351 GKPTEHSTIIFTATKHHVEYLANLL--------------IYAGFAVSYVYGSLDQTARRI 396 Query 423 VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF 481 ++ F+ G N+LV T VA G+DIP V+ + V GR ARA Q +++ Sbjct 397 QVEDFRMGKTNILVVTDVAARGIDIPVLANVINFDFPPQPKVFVHRVGRTARAGQRGWSY 456 Query 482 VATEG 486 Sbjct 457 SLVRD 461 Score = 49.0 bits (115), Expect = 1e-04, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 40/114 (35%), Gaps = 8/114 (7%) Query 26 TGAGKTRAAAYVAKRHLETVD---GAKVVVLVNRVHLVTQHGEEFRRMLDG-RWTVTTLS 81 TG+GKT A L G + +++ L Q + + G L Sbjct 128 TGSGKTAAFVIPMIEKLRAHSARFGTRALIMSPSRELAIQTLKVVKEFSRGTDLKCVLLV 187 Query 82 GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH 135 G FG++A D++I T + E ++L+ +V DE Sbjct 188 GGDSLEEQFGYMAANPDIVIATPGRFLH----LKVEMSLDLSSIKYVVFDEADR 237 >sp|A7ESL7|DBP10_SCLS1 ATP-dependent RNA helicase dbp10 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 GN=dbp10 PE=3 SV=2 Length=920 Score = 98.7 bits (244), Expect = 5e-20, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 44/124 (35%), Gaps = 15/124 (12%) Query 364 SSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEV 423 IIF T+ L L+ + G S + Q + Sbjct 360 KPTEHSTIIFAATKHHVDYLASLLR--------------MSGFAVSHAYGSLDQTARNIQ 405 Query 424 IQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFV 482 ++ F+ G N+LV T VA G+DIP V+ Y V GR ARA Q +++ Sbjct 406 VEDFRTGKSNILVVTDVAARGIDIPVLANVINYDFPPQPKVFVHRVGRTARAGQRGWSYS 465 Query 483 ATEG 486 Sbjct 466 LVRD 469 Score = 49.8 bits (117), Expect = 8e-05, Method: Composition-based stats. Identities = 26/125 (21%), Positives = 46/125 (37%), Gaps = 8/125 (6%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVD---GAKVVVLVNRVHLVTQHGEEFRRML 71 L+ ++++ TG+GKT A L GA+ +++ L Q + + Sbjct 123 LDNQDVVGMARTGSGKTAAFVIPMIEKLRAHSVRVGARALIMSPSRELALQTLKVVKEFG 182 Query 72 DG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV 130 G L G FG +A D++I T + E ++L+ +V Sbjct 183 RGTDLKCVLLVGGDSLEEQFGFMAANPDIVIATPGRFLH----LKVEMSLDLSSMKYVVF 238 Query 131 DECHH 135 DE Sbjct 239 DEADR 243 >sp|Q8JFP1|IF4A2_CHICK Eukaryotic initiation factor 4A-II OS=Gallus gallus OX=9031 GN=EIF4A2 PE=2 SV=1 Length=407 Score = 96.4 bits (238), Expect = 5e-20, Method: Composition-based stats. Identities = 33/220 (15%), Positives = 84/220 (38%), Gaps = 26/220 (12%) Query 248 ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQ 307 L+R++ + + + V L+ + ++Y + + + ++ + + + Sbjct 166 MLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLSTNIQVVLLSATMPMDVLEVT 225 Query 308 DFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNS 367 + RE + ++ E L + KL+ L + + + Sbjct 226 KKFMREPIR--ILVKKEELTLEGIKQFYINVEREEW------KLDTLCDL----YETLTI 273 Query 368 PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF 427 + +IF TR+ L + + D L G M Q+++ ++++F Sbjct 274 TQAVIFLNTRRKVDWLT------EKMHARDFTVSALHG--------DMDQKERDVIMREF 319 Query 428 QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 + G+ +L+ T + G+D+ ++V+ Y L TN + + Sbjct 320 RSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIH 359 Score = 49.0 bits (115), Expect = 9e-05, Method: Composition-based stats. Identities = 32/166 (19%), Positives = 58/166 (35%), Gaps = 12/166 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETV-DGAKVVVLVNRVHLVTQHGE 65 Q I+P ++G ++I +G GKT A + LE + +VL L Q + Sbjct 60 QQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIDLKETQALVLAPTRELAQQIQK 119 Query 66 EFRRMLDGRWTVTTLS-GDMGPRAGFGHL-ARCHDLLICTAELLQMALTSPEEEEHVELT 123 + D G R L A +++ T + L ++ Sbjct 120 VILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRR----YLSPK 175 Query 124 VFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS 169 + V+DE D + + + Q+ QV+ L+A+ Sbjct 176 WIKMFVLDEA-----DEMLSRGFKDQIYEIFQKLSTNIQVVLLSAT 216 >sp|Q5NVJ8|DDX1_PONAB ATP-dependent RNA helicase DDX1 OS=Pongo abelii OX=9601 GN=DDX1 PE=2 SV=1 Length=740 Score = 98.3 bits (243), Expect = 5e-20, Method: Composition-based stats. Identities = 32/155 (21%), Positives = 60/155 (39%), Gaps = 12/155 (8%) Query 342 ATHGPENPKL-EMLEKILQRQF-----SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQT 395 G +P++ KIL+ ++ + IIF RT+ +L + QQ G Sbjct 475 TRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPD 534 Query 396 VDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVR 455 + ++++ +++F+ G + L+ T VA G+DI V+ Sbjct 535 KKGHQFSCV-----CLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVIN 589 Query 456 YGLLTNEISMVQARGR-ARADQSVYAFVATEGSRE 489 L + + V GR RA++ A +E Sbjct 590 VTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE 624 >sp|Q92499|DDX1_HUMAN ATP-dependent RNA helicase DDX1 OS=Homo sapiens OX=9606 GN=DDX1 PE=1 SV=2 Length=740 Score = 98.3 bits (243), Expect = 5e-20, Method: Composition-based stats. Identities = 32/155 (21%), Positives = 60/155 (39%), Gaps = 12/155 (8%) Query 342 ATHGPENPKL-EMLEKILQRQF-----SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQT 395 G +P++ KIL+ ++ + IIF RT+ +L + QQ G Sbjct 475 TRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPD 534 Query 396 VDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVR 455 + ++++ +++F+ G + L+ T VA G+DI V+ Sbjct 535 KKGHQFSCV-----CLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVIN 589 Query 456 YGLLTNEISMVQARGR-ARADQSVYAFVATEGSRE 489 L + + V GR RA++ A +E Sbjct 590 VTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE 624 >sp|A1D8G1|DHH1_NEOFI ATP-dependent RNA helicase dhh1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dhh1 PE=3 SV=1 Length=507 Score = 97.6 bits (241), Expect = 6e-20, Method: Composition-based stats. Identities = 48/285 (17%), Positives = 88/285 (31%), Gaps = 25/285 (9%) Query 234 KKLMDQI---HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDA 290 LMD I +D + + + + + V LSE + ++ + + Sbjct 153 TGLMDDIIRLNDAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQ 212 Query 291 LL-IHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENP 349 LL H R V +A + K + + + + + + E Sbjct 213 LLSFHPKDRQVMLFSATFPLIVKSF--KDKHMRNPYEINLMDELTLRGITQYYAFVEEKQ 270 Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ L FS + IIF + L + + +G Sbjct 271 KV----HCLNTLFSKLQINQSIIFCNSTNRVELLAKKITE--------------LGYSCF 312 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 M Q+ + V F++G LV + + G+DI NVV+ + N + + Sbjct 313 YSHARMLQQHRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRI 372 Query 470 GR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM 513 GR R A I + L T ++ + K Sbjct 373 GRSGRFGHLGLAINLINWDDRFNLYKIEQELGTEIQPIPQNIDKK 417 Score = 50.6 bits (119), Expect = 4e-05, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 47/131 (36%), Gaps = 10/131 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA---KVVVLVNRVHLVTQH 63 Q E I AL G++I+ G GKT AA+V + + ++LV L Q Sbjct 74 QEETIPVALTGRDILARAKNGTGKT--AAFVIPTLERINPKSTKTQALILVPTRELALQT 131 Query 64 GEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 + + + V +G G L +L+ T + + +L Sbjct 132 SQVCKTLGKHLGINVMVTTGGTGLMDDIIRLNDAVHILVGTPGRVLD----LASKGVADL 187 Query 123 TVFSLIVVDEC 133 + V+DE Sbjct 188 SECPTFVMDEA 198 >sp|P10081|IF4A_YEAST ATP-dependent RNA helicase eIF4A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TIF1 PE=1 SV=3 Length=395 Score = 96.0 bits (237), Expect = 6e-20, Method: Composition-based stats. Identities = 33/217 (15%), Positives = 78/217 (36%), Gaps = 27/217 (12%) Query 251 RKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFY 310 R+F T + ++ ++ +G +EQ L +++ D L F Sbjct 157 RRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFM 216 Query 311 HREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRG 370 + + F E E + L + S + + Sbjct 217 RNPVRILVKKDELTLEGIKQFYVNVEEE-------------EYKYECLTDLYDSISVTQA 263 Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 +IF TR+ L L+ + S+ + + Q+++ ++++F+ G Sbjct 264 VIFCNTRRKVEELTTKLRNDK--------------FTVSAIYSDLPQQERDTIMKEFRSG 309 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 + +L++T + G+D+ ++V+ Y L N+ + + Sbjct 310 SSRILISTDLLARGIDVQQVSLVINYDLPANKENYIH 346 Score = 47.5 bits (111), Expect = 3e-04, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 41/130 (32%), Gaps = 9/130 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT---RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQH 63 Q IMP +EG +++ +G GKT AA +R +V + ++L L Q Sbjct 49 QQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAAL--QRIDTSVKAPQALMLAPTRELALQI 106 Query 64 GEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELT 123 + + R +++ T + + Sbjct 107 QKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRR----FRTD 162 Query 124 VFSLIVVDEC 133 + ++DE Sbjct 163 KIKMFILDEA 172 >sp|A6ZQJ1|IF4A_YEAS7 ATP-dependent RNA helicase eIF4A OS=Saccharomyces cerevisiae (strain YJM789) OX=307796 GN=TIF1 PE=3 SV=1 Length=395 Score = 96.0 bits (237), Expect = 6e-20, Method: Composition-based stats. Identities = 33/217 (15%), Positives = 78/217 (36%), Gaps = 27/217 (12%) Query 251 RKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFY 310 R+F T + ++ ++ +G +EQ L +++ D L F Sbjct 157 RRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFM 216 Query 311 HREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRG 370 + + F E E + L + S + + Sbjct 217 RNPVRILVKKDELTLEGIKQFYVNVEEE-------------EYKYECLTDLYDSISVTQA 263 Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 +IF TR+ L L+ + S+ + + Q+++ ++++F+ G Sbjct 264 VIFCNTRRKVEELTTKLRNDK--------------FTVSAIYSDLPQQERDTIMKEFRSG 309 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 + +L++T + G+D+ ++V+ Y L N+ + + Sbjct 310 SSRILISTDLLARGIDVQQVSLVINYDLPANKENYIH 346 Score = 47.5 bits (111), Expect = 3e-04, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 41/130 (32%), Gaps = 9/130 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT---RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQH 63 Q IMP +EG +++ +G GKT AA +R +V + ++L L Q Sbjct 49 QQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAAL--QRIDTSVKAPQALMLAPTRELALQI 106 Query 64 GEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELT 123 + + R +++ T + + Sbjct 107 QKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRR----FRTD 162 Query 124 VFSLIVVDEC 133 + ++DE Sbjct 163 KIKMFILDEA 172 >sp|A1CJ18|DHH1_ASPCL ATP-dependent RNA helicase dhh1 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=dhh1 PE=3 SV=1 Length=503 Score = 97.2 bits (240), Expect = 6e-20, Method: Composition-based stats. Identities = 54/321 (17%), Positives = 99/321 (31%), Gaps = 29/321 (9%) Query 234 KKLMDQI---HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDA 290 LMD I +D + + + + + V LSE + ++ + + Sbjct 153 TGLMDDIIRLNDAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQ 212 Query 291 LL-IHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENP 349 LL H R V +A + K + + + + + + E Sbjct 213 LLSFHPKDRQVMLFSATFPLIVKSF--KDKHMRNPYEINLMDELTLRGITQYYAFVEEKQ 270 Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ L FS + IIF + L + + +G Sbjct 271 KV----HCLNTLFSKLQINQSIIFCNSTNRVELLAKKITE--------------LGYSCF 312 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 M Q+ + V F++G LV + + G+DI NVV+ + N + + Sbjct 313 YSHARMLQQHRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRI 372 Query 470 GR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKI---RDL 525 GR R A I + L T + Q + Y + R + Sbjct 373 GRSGRFGHLGLAINLINWEDRFNLYKIEQELGTEI-QPIPQNIDKKLYVYDSPETIPRPI 431 Query 526 QQAALTKRAAQAAQRENQRQQ 546 ++A Q+ E + Q Sbjct 432 SNPPQLRQATQSVTAERRHQN 452 Score = 50.2 bits (118), Expect = 5e-05, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 47/131 (36%), Gaps = 10/131 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA---KVVVLVNRVHLVTQH 63 Q E I AL G++I+ G GKT AA+V + + ++LV L Q Sbjct 74 QEETIPVALTGRDILARAKNGTGKT--AAFVIPTLERINPKSTKTQALILVPTRELALQT 131 Query 64 GEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 + + + V +G G L +L+ T + + +L Sbjct 132 SQVCKTLGKHLGINVMVTTGGTGLMDDIIRLNDAVHILVGTPGRVLD----LASKGVADL 187 Query 123 TVFSLIVVDEC 133 + V+DE Sbjct 188 SECPTFVMDEA 198 >sp|Q4HW67|DHH1_GIBZE ATP-dependent RNA helicase DHH1 OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=DHH1 PE=3 SV=2 Length=522 Score = 97.6 bits (241), Expect = 6e-20, Method: Composition-based stats. Identities = 50/286 (17%), Positives = 89/286 (31%), Gaps = 26/286 (9%) Query 229 FGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN 288 D + +L D +H + P + V LSE + ++ ++ Sbjct 157 LRDDIIRLQDPVHIVVGTPGRILDLAG----KNVADLSECPMFIMDEADKLLSIEFTPVI 212 Query 289 DALL-IHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPE 347 + LL H R V +A ++ K + E + + + + E Sbjct 213 EQLLQFHPKDRQVMLFSATFPLSVKDFSDKNMVSPYE--INLMDELTLRGITQYYAFVEE 270 Query 348 NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG 407 K+ L FS + IIF + L + + +G Sbjct 271 KQKV----HCLNTLFSKLQINQSIIFCNSTNRVELLAKKITE--------------LGYS 312 Query 408 NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 M Q + V F++G LV + + G+DI NVV+ + N + + Sbjct 313 CFYSHAKMQQHARNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLH 372 Query 468 ARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQK 512 GR R A I L T ++ A++ K Sbjct 373 RIGRSGRYGHLGLAINLINWDDRFNLYNIERDLGTEIQPIPASIDK 418 Score = 52.9 bits (125), Expect = 7e-06, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 50/131 (38%), Gaps = 10/131 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG-AKV--VVLVNRVHLVTQH 63 Q E I AL G++I+ G GKT AA+V +K+ ++LV L Q Sbjct 76 QEESIPVALTGRDILARAKNGTGKT--AAFVIPTLERINPKISKIQCLILVPTRELAMQT 133 Query 64 GEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 + + + V +G G R L +++ T + + +L Sbjct 134 SQVCKTLGKHLGINVMVTTGGTGLRDDIIRLQDPVHIVVGTPGRILD----LAGKNVADL 189 Query 123 TVFSLIVVDEC 133 + + ++DE Sbjct 190 SECPMFIMDEA 200 >sp|A3GHW9|ROK1_PICST ATP-dependent RNA helicase ROK1 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) OX=322104 GN=ROK1 PE=3 SV=1 Length=558 Score = 97.6 bits (241), Expect = 6e-20, Method: Composition-based stats. Identities = 43/232 (19%), Positives = 81/232 (35%), Gaps = 32/232 (14%) Query 339 AHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI 398 L G E KL + +++Q P IIF ++ A +L Sbjct 343 QKLVFTGSEEGKLLAIRQMIQE---GEFKPPIIIFLQSIHRAKAL--------------F 385 Query 399 RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL 458 L T + ++EVI++F++G + +L+ T V G+D N+V+ Y + Sbjct 386 HELLYDKLNVDVIHAERTPKQREEVIKRFKNGDIWVLITTDVLARGVDFKGVNMVINYDV 445 Query 459 LTNEISMVQARGRARADQSV--YAFVATEGSRELKRELINEA------------LETLME 504 + V GR T+ + + +IN +E + + Sbjct 446 PQTAQAYVHRIGRTGRGGKAGRAVTFFTKEDDQAVKPIINVMKQSGCEAGFSGWMENMTK 505 Query 505 QAVAAVQKMDQAEYQAK-IRDLQQAALTKRAAQAAQRENQRQQFPVEHVQLL 555 + +K+ E K I + + KR + E +++ E L Sbjct 506 MSKNEKKKVKHKEIDRKDISTVPKLVKHKRKQREQMIEASKKRKQEETRNAL 557 Score = 55.2 bits (131), Expect = 1e-06, Method: Composition-based stats. Identities = 27/136 (20%), Positives = 56/136 (41%), Gaps = 13/136 (10%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT------RAAAYVAKRHLETVDGAKV-VVLVNRVHL 59 Q E + +L G+++I PTG+GKT + + + +V+ L Sbjct 147 QCESLPISLSGRDLIACAPTGSGKTLAFLIPLIQSLLVSSKGRPKNYGITGLVISPTNEL 206 Query 60 VTQHGEEFRRMLDGRW-TVTTLSGDMGPRAGFGHLA-RCHDLLICTAELLQMALTSPEEE 117 Q +E + + G+ V LS + + + +D+++ T L + + + Sbjct 207 AIQIFQELQILTRGKKLNVAILSKQLANKLNNDIVKASKYDIIVSTPLRLIDIVKNEK-- 264 Query 118 EHVELTVFSLIVVDEC 133 V+L+ +V+DE Sbjct 265 --VDLSKVEQLVIDEA 278 >sp|A2QEN5|IF4A_ASPNC ATP-dependent RNA helicase eIF4A OS=Aspergillus niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) OX=425011 GN=tif1 PE=3 SV=1 Length=398 Score = 96.0 bits (237), Expect = 7e-20, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 47/118 (40%), Gaps = 14/118 (12%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K E L + + + +IF TR+ L L D + G Sbjct 247 KEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKL------TARDFTVSAMHG---- 296 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 M Q + ++++F+ G+ +L+AT + G+D+ ++V+ Y L N + + Sbjct 297 ----DMEQGQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIH 350 Score = 55.2 bits (131), Expect = 1e-06, Method: Composition-based stats. Identities = 20/129 (16%), Positives = 44/129 (34%), Gaps = 6/129 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q I P + G ++I +G GKT + ++ + + + +++ L Q + Sbjct 52 QQRAIKPIIAGHDVIAQAQSGTGKTATFSISALQKIDQELKACQALIVAPTRELAQQIQK 111 Query 66 EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 + D G R L +++ T + + E ++ Sbjct 112 VVVAIGDFMNIECHACIGGTNVRDDMNALRAGPQVVVGTPGRIHDMI----ERRVLKTDQ 167 Query 125 FSLIVVDEC 133 L ++DE Sbjct 168 MKLFILDEA 176 >sp|A6RY31|DHH1_BOTFB ATP-dependent RNA helicase dhh1 OS=Botryotinia fuckeliana (strain B05.10) OX=332648 GN=dhh1 PE=3 SV=1 Length=538 Score = 97.2 bits (240), Expect = 7e-20, Method: Composition-based stats. Identities = 49/325 (15%), Positives = 98/325 (30%), Gaps = 25/325 (8%) Query 230 GDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND 289 G L+ + ++ + + + + + + V LSE + ++ + + Sbjct 152 GTTLRDDILRLQEPVHIIVGTPGRILDLAGKNVADLSECNMFVMDEADKLLSPEFTIVIE 211 Query 290 ALL-IHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPEN 348 LL H R + +A ++ + + + + + + E Sbjct 212 QLLQFHPKDRQIMLFSATFPMTVKDF--SDKNMADPYEINLMDELTLRGITQFYAFVEEK 269 Query 349 PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN 408 K+ L FS + IIF + L + + +G Sbjct 270 EKV----HCLNTLFSKLQINQSIIFCNSTNRVELLAKKITE--------------LGYSC 311 Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 M Q ++ V F++G LV + + G+DI NVV+ + N + + Sbjct 312 FYSHARMIQANRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHR 371 Query 469 RGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQ 527 GR R A L N E E A ++ + Sbjct 372 IGRSGRFGHLGLAINLISWEDRFN--LYNIERELGTEIAPIPQIIPKNLYVYETPENIPR 429 Query 528 AALT-KRAAQAAQRENQRQQFPVEH 551 + + A + QQ P +H Sbjct 430 PVSNFQTNTRQASGPGRDQQQPTQH 454 Score = 55.2 bits (131), Expect = 2e-06, Method: Composition-based stats. Identities = 27/131 (21%), Positives = 48/131 (37%), Gaps = 10/131 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA---KVVVLVNRVHLVTQH 63 Q E I AL G++I+ G GKT AA+V + ++LV L Q Sbjct 74 QEEAIPVALTGRDILARAKNGTGKT--AAFVIPALERINPKNTKVQCLILVPTRELALQT 131 Query 64 GEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 + + + V +G R L +++ T + + +L Sbjct 132 SQVCKTLGQHLGINVMVTTGGTTLRDDILRLQEPVHIIVGTPGRILD----LAGKNVADL 187 Query 123 TVFSLIVVDEC 133 + ++ V+DE Sbjct 188 SECNMFVMDEA 198 >sp|A2R0B5|SUB2_ASPNC ATP-dependent RNA helicase sub2 OS=Aspergillus niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) OX=425011 GN=sub2 PE=3 SV=1 Length=440 Score = 96.4 bits (238), Expect = 7e-20, Method: Composition-based stats. Identities = 53/335 (16%), Positives = 115/335 (34%), Gaps = 51/335 (15%) Query 200 PQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYE 259 P C + H+++ Q + R D+ + + EL + Y Sbjct 123 PGECSILVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDVELLSN--KESYP 180 Query 260 QQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQD----------- 308 VV L L + +L R A ++ + + +D + +D Sbjct 181 NIVVGT--PGRLNALVRDKKLSL---RNVKAFVLDECDKMLDQIDMRRDVQEIFRATPAD 235 Query 309 ---FYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG--------PENPKLEMLEKI 357 +++ ++ + + ++ L HG E K L ++ Sbjct 236 KQVMMFSATLSQEIRPVCKKFMRNPLEVYVDDDTKLTLHGLQQYYIKLSEAEKNRKLNEL 295 Query 358 LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ 417 L + IIF ++ A+ L L++ + + ++Q Sbjct 296 LDSL----EFNQVIIFVKSTLRANELDKLLRECNFPSI--------------AVHSGVSQ 337 Query 418 RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQS 477 ++ + ++F++ + VAT V G+DI N+ + Y L + S + GRA + Sbjct 338 EERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGT 397 Query 478 ---VYAFVATEGSRELKRELINEALETLMEQAVAA 509 +FV+TE ++ ++ I + E + + Sbjct 398 KGLSISFVSTEDDEKVLKD-IEKRFEVALPEYPEG 431 Score = 47.5 bits (111), Expect = 3e-04, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 47/135 (35%), Gaps = 14/135 (10%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG-AKVVVLVNRVHLVTQ--- 62 Q I A+ +++ +G GKT LE V G ++V+ + L Q Sbjct 84 QQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSILVMCHTRELAYQIKN 143 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHD----LLICTAELLQMALTSPEEEE 118 F + L T G P L + +++ T L AL ++ Sbjct 144 EYARFSKYLPDVKTAVFYGG--TPIQKDVELLSNKESYPNIVVGTPGRL-NALVRDKK-- 198 Query 119 HVELTVFSLIVVDEC 133 + L V+DEC Sbjct 199 -LSLRNVKAFVLDEC 212 >sp|Q9VVK8|DDX52_DROME Probable ATP-dependent RNA helicase DDX52 OS=Drosophila melanogaster OX=7227 GN=ais PE=1 SV=1 Length=594 Score = 97.6 bits (241), Expect = 7e-20, Method: Composition-based stats. Identities = 75/489 (15%), Positives = 156/489 (32%), Gaps = 55/489 (11%) Query 143 NVIMSQYLELKLQRAQPLPQVL---GLTASPGTGGASKLDGAINHVLQLCANLDTWCIMS 199 N++ + + Q LP +L L A TG L + L A+ T Sbjct 133 NLLSRNFDHPTPIQMQALPVLLQRRALMACAPTGSGKTLAFLTPIINGLRAHKTTGLRAL 192 Query 200 PQNCCPQLQEHSQQPCKQYNLC------HRRSQDPFGDLLKKLMDQIHDHLEMPELSRKF 253 +L + + C + Q +D L +F Sbjct 193 VLAPTRELAQQIYRECAELTRETGLRTHFISKVSEAKQKHGAECKQRYDILVSTPNRVRF 252 Query 254 GTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHRE 313 Q E ++ LS + R+ + + L D + A + + Sbjct 253 LLQQ-EPPLLDLSHVEWFVLDEADRLMEEGQNNFKEQL---DDIYAACSNPTKCVAFFSA 308 Query 314 HVT------KTQILCAERRLLALFDDRKNE--LAHLATHGPENPKLEMLEKILQRQFSSS 365 T + L R+ + E L G E KL + ++++ Sbjct 309 TYTVPVAKWALRHLKNLVRITIGVQNSATETVQQELLFVGSEGGKLVAIRDLVRQGL--- 365 Query 366 NSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQ 425 P ++F ++++ A L L L G +Q + ++ Sbjct 366 -QPPVLVFVQSKERAKQLFEEL--------------LYDGINVDVIHAERSQHQRDNCVK 410 Query 426 KFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYA--FV 482 F++G++ +L+ T + G+D N+V+ Y IS + GR RA + A F Sbjct 411 AFREGSIWVLICTELMGRGIDFKGVNLVINYDFPPTTISYIHRIGRTGRAGRPGRAITFF 470 Query 483 ATEGSRELKR-ELINEALETLMEQAVAAVQKMDQAEYQ-AKIRDLQQAALTKRAAQAAQR 540 E + L+ LI + + + + ++K+ ++E + + L + ++ + + Sbjct 471 TQEDTSNLRGIALIIKNSGGTVPEYMLQMKKVRKSEAKMRAKKPLDREDISTKIRPETKG 530 Query 541 ENQRQQFPVEHVQLLCINCMVAVGHGSDLRKVEGTHHVNVNPNFSNYYNVSRDPVVINKV 600 + + + ++ V+ G+ DL N N+ + K Sbjct 531 DEKHKSTKLKKVERTEKILKNRKGYEKDL-----------NSKQKKLGNIKTELKPAGKR 579 Query 601 FKDWKPGGV 609 + + Sbjct 580 KGNVEKKTK 588 Score = 60.6 bits (145), Expect = 3e-08, Method: Composition-based stats. Identities = 44/285 (15%), Positives = 97/285 (34%), Gaps = 21/285 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLE--TVDGAKVVVLVNRVHLVTQHG 64 Q + + L+ + ++ PTG+GKT A L G + +VL L Q Sbjct 146 QMQALPVLLQRRALMACAPTGSGKTLAFLTPIINGLRAHKTTGLRALVLAPTRELAQQIY 205 Query 65 EEFRRMLDGRWTVTTLSGDMGP--RAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 E + T + + + +D+L+ T ++ L +E ++L Sbjct 206 RECAELTRETGLRTHFISKVSEAKQKHGAECKQRYDILVSTPNRVRFLLQ--QEPPLLDL 263 Query 123 TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAI 182 + V+DE ++ N Q ++ + P V +A+ A + Sbjct 264 SHVEWFVLDEADRLMEEGQ-NNFKEQLDDIYAACSNPTKCVAFFSATYTVPVAKWALRHL 322 Query 183 NHVLQLCANLDTWCIMSPQNC--------------CPQLQEHSQQPCKQYNLCHRRSQDP 228 +++++ + + Q +++ Q P + R++ Sbjct 323 KNLVRITIGVQNSATETVQQELLFVGSEGGKLVAIRDLVRQGLQPPVLVFVQSKERAKQL 382 Query 229 FGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAG 273 F +LL ++ H E + R + + + + + L G Sbjct 383 FEELLYDGINVDVIHAERSQHQRDNCVKAFREGSIWVLICTELMG 427 >sp|Q473K3|UVRB_CUPPJ UvrABC system protein B OS=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) OX=264198 GN=uvrB PE=3 SV=1 Length=695 Score = 97.9 bits (242), Expect = 8e-20, Method: Composition-based stats. Identities = 98/652 (15%), Positives = 199/652 (31%), Gaps = 129/652 (20%) Query 8 WEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEF 67 E I L + ++ TG+GKT A V R G +V L Q EF Sbjct 44 VEGIEDGLSFQTLLGV--TGSGKTYTMANVIARM-----GRPAIVFAPNKTLAAQLYSEF 96 Query 68 RRMLDGRWTVTTLS----------------------------GDMGPRAGFGHLARCHDL 99 R +S M A L R + Sbjct 97 REFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEHIEQMRLSATKSLLERRDTI 156 Query 100 LICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQP 159 ++ T + E + + + + +D + +I QY + + Sbjct 157 IVATVSAIYGIGNPNEYHQMILTLRTGDKI------SQRDVIARLIAMQYTRNETDFQRG 210 Query 160 LPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYN 219 +V G T +++ + +L + ++ + +++ + + Sbjct 211 TFRVRGDTIDIFPAEHAEMAVRLEMFDDEVESLQFFDPLTGR-----VRQKIPRFTVYPS 265 Query 220 LCHRRSQDPFGDLLKKLMDQIHDHLEMP-ELSRKFGTQMYEQQVVKLSEAAALAGLQEQ- 277 + ++ ++ + ++ D LE + +R Q EQ+ E + G + Sbjct 266 SHYVTPRETVLRAIEDIKAELRDRLEFFHKENRLVEVQRLEQRTRFDLEMLSELGFCKGI 325 Query 278 RVYALHLRRY---------NDALLIHDTVRAVDAL---AALQDFYHREHVTKTQILCAER 325 Y+ HL D L + ++ L Y+ + KT ++ Sbjct 326 ENYSRHLSGAKPGEPPPTLVDYLPSDALMFLDESHVLIGQLNGMYNGDRARKTTLVEYGF 385 Query 326 RLLALFDDRKNELAHLAT--------------HGPEN----------------------P 349 RL + D+R + E+ P Sbjct 386 RLPSALDNRPLKFEEFERKMRQVMFVSATPAQFEKEHAGQVVEQVVRPTGLVDPIIIVRP 445 Query 350 KLEMLEKILQRQ-FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN 408 ++ +L R ++ T T++ A L +L + G Sbjct 446 ATTQVDDLLSEINLRVEAGERVLVTTLTKRMAEQLTEFLSEN--------------GVKV 491 Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEI 463 + + ++ E+I+ + GT ++LV ++ EGLDIP ++V L E Sbjct 492 RYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAER 551 Query 464 SMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQ-------------AVAAV 510 S++Q GRA + + A + + + R+ I+E +Q + + Sbjct 552 SLIQTIGRAARNVNGTAILYADRITDSMRKAIDETERRRAKQMAFNEANGITPRGVIKRI 611 Query 511 QKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQLLCINCMVA 562 + + Y A + A +RA E Q + +L+ + Sbjct 612 KDIIDGVYDAGEVKAELLAAQERARYEDMSEKQVSKEIKRLEKLMMDHAKNL 663 >sp|Q6CDS6|ROK1_YARLI ATP-dependent RNA helicase ROK1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=ROK1 PE=3 SV=1 Length=547 Score = 97.2 bits (240), Expect = 8e-20, Method: Composition-based stats. Identities = 32/190 (17%), Positives = 72/190 (38%), Gaps = 19/190 (10%) Query 370 GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD 429 IIF ++ A +L + + G MT + VI +F++ Sbjct 367 VIIFLQSIDRAKAL--------------FKELVFDGINVDQIHGDMTAAKRASVIDRFRN 412 Query 430 GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSR 488 G + +L+ T V G+D N+V+ Y + + S V GR RA + A Sbjct 413 GEVWVLICTDVLARGIDFRGINLVINYDVPQSAQSYVHRIGRTGRAGRLGKAVTFFTKED 472 Query 489 ELKRELINEALETLMEQAVAAVQKM----DQAEYQAKIRDLQQAALTKRAAQAAQRENQR 544 +++ ++ ++ + + + K R +++ ++ + A A ++ + Sbjct 473 ATNVKVVVNVMKQSGQEVPDWLNNLAPLTQKERDNIKNRPIKRKKISTQHALANNKKKRA 532 Query 545 QQFPVEHVQL 554 +Q ++ Sbjct 533 KQQMKGLKKM 542 Score = 62.5 bits (150), Expect = 8e-09, Method: Composition-based stats. Identities = 32/141 (23%), Positives = 53/141 (38%), Gaps = 18/141 (13%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-------KVVVLVNRVHL 59 Q E I L G+++I PTG+GKT A + L G+ K +V+ L Sbjct 138 QCESIPTMLNGRDLIACAPTGSGKTMAYSIPMVEMLGKKKGSKDAKKGIKALVVAPTKEL 197 Query 60 VTQ-HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHL------ARCHDLLICTAELLQMALT 112 +Q F + L + ++ L ++ +D+ I T L AL Sbjct 198 ASQIFNAVFSLCVGVGKKKDELKPCLLDKSTADKLRNGKVSSQKYDICITTPLRLVSALN 257 Query 113 SPEEEEHVELTVFSLIVVDEC 133 ++L L++ DE Sbjct 258 D----GSLDLGSLDLVIFDEA 274 >sp|P90897|RDE12_CAEEL DEAD-box ATP-dependent RNA helicase rde-12 OS=Caenorhabditis elegans OX=6239 GN=rde-12 PE=1 SV=4 Length=959 Score = 98.3 bits (243), Expect = 8e-20, Method: Composition-based stats. Identities = 30/180 (17%), Positives = 65/180 (36%), Gaps = 23/180 (13%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K L +IL++ + + + IIF + + + L G Sbjct 629 KNAKLREILKQNVNG-KTLKTIIFVQKKDQCDACAAKLTSG--------------GMLAQ 673 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL--------TN 461 + +Q ++++I F+ +NLLV T + G+D+ + V+ + L Sbjct 674 TLHGDRSQDMREKLINDFKSNRVNLLVTTDLLSRGIDVSDLDRVINFDLPDGDPDQGADT 733 Query 462 EISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK 521 I GR ++ + + L + +E ++ Q + ++ D + AK Sbjct 734 FIHRAGRTGRTGRKENGLCVSFVDPQSDRDSLLAPKLVELIISQNLPDLKVPDFLDAMAK 793 Score = 54.4 bits (129), Expect = 3e-06, Method: Composition-based stats. Identities = 31/149 (21%), Positives = 49/149 (33%), Gaps = 16/149 (11%) Query 3 LRSYQWEVIMPALEGKNIIIWLPTGAGKTRA-------AAYVA----KRHLETVDGAKVV 51 +R+ Q +I L+G +++ T AGKT A + DG + Sbjct 403 VRTIQGAMIPQVLDGHDVLGQAETSAGKTAAFGLPIIDKILRMDEETRNKARQDDGPLAL 462 Query 52 VLVNRVHLVTQHGEEFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMA 110 +L L Q E R + LS G + D+LI T + Sbjct 463 ILAPTRELAAQIHEALRTYCQNTDIIVLLSYGQSDRARSLNEIRNGCDILIGTCGRIMD- 521 Query 111 LTSPEEEEHVELTVFSLIVVDECHHTHKD 139 + H+ L +V DE +D Sbjct 522 ---FTVKSHISLLHLRFLVFDEADRLLQD 547 >sp|Q0DLB9|RH17_ORYSJ DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa subsp. japonica OX=39947 GN=RH17 PE=2 SV=2 Length=591 Score = 97.2 bits (240), Expect = 9e-20, Method: Composition-based stats. Identities = 36/139 (26%), Positives = 57/139 (41%), Gaps = 4/139 (3%) Query 349 PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAH---SLLLWLQQQQGLQTVDIRAQLLIG 405 +L +L IL+ F S + ++F T S ++L L+ GLQ + Q I Sbjct 305 SRLAILLTILKSLFERQLSHKVVVFLSTCDSVDFHHTVLSQLEWSPGLQLDTDKKQKFIS 364 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465 +M Q D+++ F +LV+T VA GLD P +++Y Sbjct 365 CKVFRLHGNMDQDDRKKSFLGFSSEKSAILVSTDVAARGLDFPKVKCIIQYDSPGEASEY 424 Query 466 VQARGR-ARADQSVYAFVA 483 V GR AR + A + Sbjct 425 VHRVGRTARIGEKGEALLF 443 Score = 54.4 bits (129), Expect = 2e-06, Method: Composition-based stats. Identities = 30/139 (22%), Positives = 43/139 (31%), Gaps = 18/139 (13%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHL-------ETVDGAKVVVLVNRVHL 59 Q + I A+ G+++++ TG GKT A L E DG +VLV L Sbjct 51 QAQAIPVAMSGQHMLVKAATGTGKTLAYLAPIVHLLQMREPRVERTDGTFALVLVPTREL 110 Query 60 VTQ-----HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP 114 Q R + G L + +LI T L L Sbjct 111 CLQVYGIAQQLVHRFH---WLVPGYIMGGENRAKEKARLRKGISILIATPGRLLDHLQHT 167 Query 115 EEEEHVELTVFSLIVVDEC 133 + + V DE Sbjct 168 SSFVYPNMRWI---VFDEA 183 >sp|Q9M2E0|RH12_ARATH DEAD-box ATP-dependent RNA helicase 12 OS=Arabidopsis thaliana OX=3702 GN=RH12 PE=2 SV=1 Length=498 Score = 96.8 bits (239), Expect = 9e-20, Method: Composition-based stats. Identities = 58/382 (15%), Positives = 120/382 (31%), Gaps = 37/382 (10%) Query 147 SQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG-----AINHVLQLCAN---LDTWCIM 198 + + + + +P + LT S A G I + ++ N + ++ Sbjct 142 KGFEKPSPIQEESIP--IALTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQAMILV 199 Query 199 SPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMY 258 + Q + ++ K N+ + G L+ + ++H + + + + Sbjct 200 PTRELALQTSQVCKELSKYLNI--QVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRILDLT 257 Query 259 EQQVVKLSEAAALAGLQEQRVYALHLRRYNDALL-IHDTVRAVDALAALQDFYHREHVTK 317 ++ V L + A L + ++ + + + L+ R +A + K Sbjct 258 KKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMFSATFPVTVKAF--K 315 Query 318 TQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTR 377 + L + + + E K+ L FS + IIF + Sbjct 316 DRHLRKPYVINLMDQLTLMGVTQYYAFVEERQKV----HCLNTLFSKLQINQSIIFCNSV 371 Query 378 QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA 437 L + + +G M Q + V +F++G LV Sbjct 372 NRVELLAKKITE--------------LGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVC 417 Query 438 TSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELIN 496 T + G+DI NVV+ + S + GR R A R + Sbjct 418 TDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYE---DRFKMY 474 Query 497 EALETLMEQAVAAVQKMDQAEY 518 + + L + +DQA Y Sbjct 475 QTEQELGTEIKPIPSNIDQAIY 496 Score = 47.5 bits (111), Expect = 3e-04, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 52/131 (40%), Gaps = 10/131 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT-RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q E I AL G +I+ G GKT V ++ + + ++LV L Q + Sbjct 151 QEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQ 210 Query 66 EFR---RMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 + + L+ + VT +G R L + LL+ T + ++ L Sbjct 211 VCKELSKYLNIQVMVT--TGGTSLRDDIMRLHQPVHLLVGTPGRILD----LTKKGVCVL 264 Query 123 TVFSLIVVDEC 133 +++V+DE Sbjct 265 KDCAMLVMDEA 275 >sp|Q1DQ20|IF4A_COCIM ATP-dependent RNA helicase eIF4A OS=Coccidioides immitis (strain RS) OX=246410 GN=TIF1 PE=3 SV=1 Length=398 Score = 95.6 bits (236), Expect = 1e-19, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 47/118 (40%), Gaps = 14/118 (12%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K E L + + + +IF TR+ L L D + G Sbjct 247 KEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLI------ARDFTVSAMHG---- 296 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 M Q + ++++F+ G+ +L+AT + G+D+ ++V+ Y L N + + Sbjct 297 ----EMEQNQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIH 350 Score = 54.4 bits (129), Expect = 2e-06, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 44/129 (34%), Gaps = 6/129 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q IMP ++G ++I +G GKT + ++ + + ++L L Q + Sbjct 52 QQRAIMPVIKGSDVIAQAQSGTGKTATFSISALQKVDTNLKACQALILAPTRELAQQIQK 111 Query 66 EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 + D G R L +++ T + + ++ Sbjct 112 VVVAIGDFMSVECHACIGGTNVREDIKALNDGPQVVVGTPGRVHDMIQRRV----LKTDQ 167 Query 125 FSLIVVDEC 133 + V+DE Sbjct 168 MKMFVLDEA 176 >sp|Q2HFP1|IF4A_CHAGB ATP-dependent RNA helicase eIF4A OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=TIF1 PE=3 SV=1 Length=397 Score = 95.6 bits (236), Expect = 1e-19, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 48/118 (41%), Gaps = 14/118 (12%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K + L + + + +IF TR+ L LQ D + G Sbjct 246 KEDWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLQ------ARDFTVSAMHG---- 295 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 M Q + ++++F+ G+ +L+AT + G+D+ ++V+ Y L N + + Sbjct 296 ----DMDQTQRDLIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIH 349 Score = 57.5 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 24/129 (19%), Positives = 46/129 (36%), Gaps = 6/129 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q IMP ++G ++I +G GKT + V ++ TV + ++L L Q + Sbjct 51 QQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQKIDPTVKSCQALILAPTRELAQQIQK 110 Query 66 EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 + D G R L +++ T + + ++ Sbjct 111 VVIAIGDFMNIECHACIGGTSVRDDMKALQDGPQVIVGTPGRVHDMIQRR----ILKTDQ 166 Query 125 FSLIVVDEC 133 + V+DE Sbjct 167 MKMFVLDEA 175 >sp|Q2U6P7|SUB2_ASPOR ATP-dependent RNA helicase sub2 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=sub2 PE=3 SV=1 Length=441 Score = 96.0 bits (237), Expect = 1e-19, Method: Composition-based stats. Identities = 51/335 (15%), Positives = 114/335 (34%), Gaps = 51/335 (15%) Query 200 PQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYE 259 P C + H+++ Q + R D+ + + E+ + Y Sbjct 124 PGECSVLVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDVEVLSN--KESYP 181 Query 260 QQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQD----------- 308 VV L L + +L R A ++ + + +D + +D Sbjct 182 NIVVGT--PGRLNALVRDKKLSL---RNVKAFVLDECDKMLDQIDMRRDVQEIFRATPAD 236 Query 309 ---FYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG--------PENPKLEMLEKI 357 +++ ++ + + ++ L HG E K L ++ Sbjct 237 KQVMMFSATLSQEIRPVCKKFMRNPLEVYVDDDTKLTLHGLQQYYIKLSEAEKNRKLNEL 296 Query 358 LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ 417 L + IIF ++ A+ L L++ + + ++Q Sbjct 297 LDSL----EFNQVIIFVKSTLRANELDKLLRECNFPSI--------------AVHSGVSQ 338 Query 418 RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQS 477 ++ + ++F++ + VAT V G+DI N+ + Y L + S + GRA + Sbjct 339 EERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGT 398 Query 478 ---VYAFVATEGSRELKRELINEALETLMEQAVAA 509 +FV+ E ++ ++ I + E + + Sbjct 399 KGLSISFVSNEEDEKVLKD-IEKRFEVALPEYPEG 432 Score = 47.1 bits (110), Expect = 5e-04, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 47/135 (35%), Gaps = 14/135 (10%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG-AKVVVLVNRVHLVTQ--- 62 Q I A+ +++ +G GKT LE V G V+V+ + L Q Sbjct 85 QQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQIKN 144 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHD----LLICTAELLQMALTSPEEEE 118 F + L T G P + + +++ T L AL ++ Sbjct 145 EYARFSKYLPDVKTAVFYGG--TPIQKDVEVLSNKESYPNIVVGTPGRL-NALVRDKK-- 199 Query 119 HVELTVFSLIVVDEC 133 + L V+DEC Sbjct 200 -LSLRNVKAFVLDEC 213 >sp|Q7XMK8|RH6_ORYSJ DEAD-box ATP-dependent RNA helicase 6 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0533000 PE=2 SV=1 Length=498 Score = 96.4 bits (238), Expect = 1e-19, Method: Composition-based stats. Identities = 53/374 (14%), Positives = 116/374 (31%), Gaps = 34/374 (9%) Query 147 SQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG--------AINHVLQLCANLDTWCIM 198 + + + +P + LT S A G A+ + Q + ++ Sbjct 142 KGFERPSPIQEESIP--IALTGSDILARAKNGTGKTAAFCIPALEKIDQDKNAIQVVILV 199 Query 199 SPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMY 258 + Q + ++ K + + G LK + +++ + + + + Sbjct 200 PTRELALQTSQVCKELGKHLKI--QVMVTTGGTSLKDDIVRLYQPVHLLVGTPGRILDLT 257 Query 259 EQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIH-DTVRAVDALAALQDFYHREHVTK 317 ++ V L + L + ++ + + L+ + + R + +A +E K Sbjct 258 KKGVCVLKNCSMLVMDEADKLLSPEFQPSIQELIRYLPSNRQILMFSATFPVTVKEF--K 315 Query 318 TQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTR 377 + L + + + + E K+ L FS + IIF + Sbjct 316 DKYLPKPYVINLMDELTLKGITQFYAFVEERQKV----HCLNTLFSKLQINQSIIFCNSV 371 Query 378 QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA 437 L + + +G M Q + V F++G LV Sbjct 372 NRVELLAKKITE--------------LGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC 417 Query 438 TSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELIN 496 T + G+DI NVV+ + + + + GR R A I Sbjct 418 TDLFTRGIDIQAVNVVINFDFPKSAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIE 477 Query 497 EALETLMEQAVAAV 510 + L T ++ + Sbjct 478 QELGTEIKPIPPQI 491 Score = 54.4 bits (129), Expect = 3e-06, Method: Composition-based stats. Identities = 34/132 (26%), Positives = 53/132 (40%), Gaps = 12/132 (9%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK----VVVLVNRVHLVTQ 62 Q E I AL G +I+ G GKT AA+ LE +D K VV+LV L Q Sbjct 151 QEESIPIALTGSDILARAKNGTGKT--AAFCIPA-LEKIDQDKNAIQVVILVPTRELALQ 207 Query 63 HGEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVE 121 + + + + V +G + L + LL+ T + ++ Sbjct 208 TSQVCKELGKHLKIQVMVTTGGTSLKDDIVRLYQPVHLLVGTPGRILD----LTKKGVCV 263 Query 122 LTVFSLIVVDEC 133 L S++V+DE Sbjct 264 LKNCSMLVMDEA 275 >sp|Q56X76|RH39_ARATH DEAD-box ATP-dependent RNA helicase 39 OS=Arabidopsis thaliana OX=3702 GN=RH39 PE=2 SV=2 Length=621 Score = 97.2 bits (240), Expect = 1e-19, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 75/201 (37%), Gaps = 22/201 (11%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 KLE L ++L+ + + ++F T S+ ++ +L + Q Sbjct 355 KLEALLQVLEPSL--AKGSKVMVFCNTLNSSRAVDHYLSENQ--------------ISTV 398 Query 410 SQSTHMTQRDQQEVIQKFQD--GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 + + + E ++KF+D G LV T +A GLD+ + VV + N I + Sbjct 399 NYHGEVPAEQRVENLKKFKDEEGDCPTLVCTDLAARGLDL-DVDHVVMFDFPKNSIDYLH 457 Query 468 ARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQ 526 GR AR ++ I EA+ +++ ++ + A+ Q Sbjct 458 RTGRTARMGAKGKVTSLVSRKDQMLAARIEEAMRN--NESLESLTTDNVRRDAARTHITQ 515 Query 527 QAALTKRAAQAAQRENQRQQF 547 + + + + ++ + Sbjct 516 EKGRSVKQIREVSKQRNSRDK 536 Score = 56.0 bits (133), Expect = 8e-07, Method: Composition-based stats. Identities = 64/353 (18%), Positives = 112/353 (32%), Gaps = 35/353 (10%) Query 22 IWLP--TGAGKTRAAAYVAKRHLE----------TVDGAKVVVLVNRVHLVTQHGEEFRR 69 + L TG+GKT A + + + VVL L Q + Sbjct 152 VVLGSHTGSGKTLAYLLPIVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKS 211 Query 70 ML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLI 128 + R+ +SG R L D+++ T + + EE ++ + + Sbjct 212 ISHHARFRSILVSGGSRIRPQEDSLNNAIDMVVGTPGRILQHI----EEGNMVYGDIAYL 267 Query 129 VVDECHHTHKDTVYNVIMSQYLELKLQRAQPL----PQVLGLTASPGTGGASKLDGAINH 184 V+DE T D + + ++L QRA Q + +TA+ +D Sbjct 268 VLDEA-DTMFDRGFGPEIRKFLAPLNQRALKTNDQGFQTVLVTATMTMAVQKLVDEEFQG 326 Query 185 VLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQD-----PFGDLLKKLMDQ 239 + L + I + ++ +L + + F + L Sbjct 327 IEHLRTSTLHKKIANARHDFIKLSGGEDKLEALLQVLEPSLAKGSKVMVFCNTLNSSRAV 386 Query 240 IHDHLEMPELSRKF-GTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVR 298 H E + + G EQ+V L + G V R D L D V Sbjct 387 DHYLSENQISTVNYHGEVPAEQRVENLKKFKDEEGDCPTLVCTDLAARGLD--LDVDHVV 444 Query 299 AVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELA---HLATHGPEN 348 D D+ HR T + A+ ++ +L + LA A E+ Sbjct 445 MFDFPKNSIDYLHRTGRTAR--MGAKGKVTSLVSRKDQMLAARIEEAMRNNES 495 >sp|Q54BD6|DDX51_DICDI Probable ATP-dependent RNA helicase ddx51 OS=Dictyostelium discoideum OX=44689 GN=ddx51 PE=3 SV=1 Length=563 Score = 96.8 bits (239), Expect = 1e-19, Method: Composition-based stats. Identities = 44/299 (15%), Positives = 102/299 (34%), Gaps = 19/299 (6%) Query 236 LMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDAL-LIH 294 L D LE+ S + + +QQ +L + + ++ N L Sbjct 185 LRQSFQDWLEIVIDSTNQHSDLNQQQEEQLIKYNSKGDIELFEKSISLKDNNNQMNHLCW 244 Query 295 DTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPE----NPK 350 + V L + Y+ ++ Q+ + + K + + K Sbjct 245 SEFKLVKLLLSATMTYNPSKISLLQLNAPLFFTTSKTKEIKYSMPSTLKECYIISNGDQK 304 Query 351 LEMLEKILQRQF-----SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 +L I+ + N + I FT++ H L L+ + + + Sbjct 305 PLVLLNIIYESLLKNNANGENKKKIICFTKSVDITHRLNTLLKLIGQVDKLKFTCEEY-- 362 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465 S+ ++ ++ +++ +F+ +++L+ + + G+DI +VV+ Y N Sbjct 363 ------SSSLSTVERADLLSRFKLNQIDILICSDIMSRGMDIQDIDVVINYNTPPNITLY 416 Query 466 VQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIR 523 V GR ARA ++ + S + + E + ++Q+ + Sbjct 417 VHRVGRTARAGNFGVSYTIVDKSEIKYYISMMKKAERSQTLHCLKWKPNVYEKFQSSYK 475 Score = 48.3 bits (113), Expect = 2e-04, Method: Composition-based stats. Identities = 34/145 (23%), Positives = 54/145 (37%), Gaps = 19/145 (13%) Query 7 QWEV--IMPALEGKNIIIWLPTGAGKTRAAA--YVAKRHLETVDGAKVVVLVNRVHLVTQ 62 Q E+ + EG +I + PTG+GKT A A V K V +V V+V LV Q Sbjct 42 QQEIVPFINRTEGHDICVCAPTGSGKTLAYAIPLVQKIVKRVVRRVRVAVIVPTHDLVIQ 101 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCH------------DLLICTAELLQMA 110 + F+ ++ G V G L + H D+++ T + Sbjct 102 VEKTFQSIIKGTDLVVLSLGVKPFHIEQKLLIKNHSYGEHALYESLVDIIVSTPGRIVDH 161 Query 111 LTSPEEEEHVELTVFSLIVVDECHH 135 + L + +V+DE Sbjct 162 INETLG---FTLKYLNYLVIDEADR 183 >sp|Q0DWT8|RH1_ORYSJ DEAD-box ATP-dependent RNA helicase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0795900 PE=2 SV=1 Length=521 Score = 96.4 bits (238), Expect = 1e-19, Method: Composition-based stats. Identities = 37/221 (17%), Positives = 82/221 (37%), Gaps = 23/221 (10%) Query 337 ELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTV 396 +L N K L +LQ + ++FT + +S+H L L+ + L Sbjct 314 KLQSYKLVCKSNLKPLSLIVLLQEL----RGEKCLVFTSSVESSHRLSTLLEFFEDLPF- 368 Query 397 DIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY 456 S S + +++ + F++G +++L+ T G+ I V+ Y Sbjct 369 ----------KFSEYSRLQRESTRRKTLDAFKEGKIDVLIGTDRMARGIHIDGLRYVINY 418 Query 457 GLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE-------ALETLMEQAVA 508 + + + GR ARA +S F + + + +L +L E++V Sbjct 419 DMPPYVKTYIHRAGRTARAGESGSCFTFLRKHEVKAFDKMLKKADNSSCSLHSLPEESVE 478 Query 509 AVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPV 549 ++ + + + L+ A K + +++ + Sbjct 479 TLRPVFSSALKKLEESLESEATKKSKSGDKAPNASKRKRTI 519 Score = 45.6 bits (106), Expect = 0.001, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 47/149 (32%), Gaps = 27/149 (18%) Query 8 WEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHL--ETVDGAKVVVLVNRVHLVTQHGE 65 E I P ++I I PTG+GKT A A + L V + +V++ L Q E Sbjct 69 LETIGPGAFERDICINSPTGSGKTLAYALPIVQMLATRKVRCLRALVVLPTRDLALQVKE 128 Query 66 EFRRMLD----------------------GRWTVTTLSGDMGPRAGFGHLARCHDLLICT 103 F + + L + D+L+ T Sbjct 129 VFDAIAPVVGLSVGSAVGQSSIADEVSNLIEKSKQGLFPSLDEEYIQMEPQTKVDILVAT 188 Query 104 AELLQMALTSPEEEEHVELTVFSLIVVDE 132 L ++ + L +VVDE Sbjct 189 PGRLMDHISMTKG---FSLEHLQYLVVDE 214 >sp|Q90WU3|DDX1_CHICK ATP-dependent RNA helicase DDX1 OS=Gallus gallus OX=9031 GN=DDX1 PE=1 SV=1 Length=740 Score = 97.2 bits (240), Expect = 1e-19, Method: Composition-based stats. Identities = 29/141 (21%), Positives = 56/141 (40%), Gaps = 11/141 (8%) Query 355 EKILQRQF-----SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 KIL+ ++ + IIF RT+ ++ + QQ G + Sbjct 489 IKILKGEYTVRAIKEHKMDQAIIFCRTKIDCDNMEQYFIQQGGGPDRKGHQFSCV----- 543 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 +++++ +++F+ G + L+ T VA G+DI V+ L + + V Sbjct 544 CLHGDRKPQERKQNLERFKRGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRI 603 Query 470 GR-ARADQSVYAFVATEGSRE 489 GR RA++ A +E Sbjct 604 GRVGRAERMGLAISLVAKEKE 624 >sp|Q0UU86|IF4A_PHANO ATP-dependent RNA helicase eIF4A OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) OX=321614 GN=TIF1 PE=3 SV=1 Length=396 Score = 95.2 bits (235), Expect = 1e-19, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 47/118 (40%), Gaps = 14/118 (12%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K + L + + + +IF TR+ L L D + G Sbjct 245 KEDWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKL------TARDFTVSAMHG---- 294 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 M Q + ++++F+ G+ +L+AT + G+D+ ++V+ Y L N + + Sbjct 295 ----DMDQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIH 348 Score = 56.0 bits (133), Expect = 7e-07, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 44/129 (34%), Gaps = 6/129 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q IMP ++G ++I +G GKT + ++ V + ++L L Q + Sbjct 50 QQRAIMPVIKGHDVIAQAQSGTGKTATFSISTLQKIDSNVKACQALILAPTRELAQQIQK 109 Query 66 EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 + D G R L +++ T + + ++ Sbjct 110 VVVAIGDFMDVACHACIGGTSVRDDMKALQDGPQVVVGTPGRVHDMIQRRV----LKTDH 165 Query 125 FSLIVVDEC 133 + V+DE Sbjct 166 MKMFVLDEA 174 >sp|Q8X0X2|DBP5_NEUCR ATP-dependent RNA helicase dbp-5 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=dbp-5 PE=3 SV=1 Length=483 Score = 96.0 bits (237), Expect = 1e-19, Method: Composition-based stats. Identities = 33/195 (17%), Positives = 75/195 (38%), Gaps = 29/195 (15%) Query 349 PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN 408 P + IL + + +IF RTR++A+ + Q+ ++ + L GA Sbjct 296 PTEKDKYDILCKLYGLMTIGSSVIFVRTRETANEI------QKRMEADGHKVSALHGAYE 349 Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL--------T 460 + + ++ +F+ G +L+ T+V G+D+ ++V+ Y + Sbjct 350 G--------QSRDVLLDEFRSGRSKVLITTNVLARGIDVSSVSMVINYDIPMKGPGEREP 401 Query 461 NEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQ 519 + + + GR R + + R EAL + + + +++ + Sbjct 402 DAETYLHRIGRTGRFGRVGVSISFVHDRRSF------EALSQIAQFYGIDLIQLNPNDLD 455 Query 520 AKIRDLQQAALTKRA 534 R +Q+ + RA Sbjct 456 DTERKVQEVIKSSRA 470 Score = 47.5 bits (111), Expect = 4e-04, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 43/118 (36%), Gaps = 8/118 (7%) Query 18 KNIIIWLPTGAGKT--RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRW 75 +N+I +G GKT +++ L + ++L L Q + + G++ Sbjct 114 RNMIAQSQSGTGKTAAFVLTVLSRIDLSKPHQPQALLLAPSRELARQIQTVVQTI--GQF 171 Query 76 TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC 133 + P A +++ T + + + +++ ++V+DE Sbjct 172 CENLIVEAAIPGAISRETGVRGSVVVGTPGTVMDLVKRRQ----FDISQLKVLVIDEA 225 >sp|Q869P0|DDX31_DICDI ATP-dependent DNA helicase DDX31 OS=Dictyostelium discoideum OX=44689 GN=ddx31 PE=3 SV=2 Length=908 Score = 97.2 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 64/489 (13%), Positives = 156/489 (32%), Gaps = 53/489 (11%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTR-----AAAYVAKRHLETVDGAKVVVLVNRVHLVT 61 Q I P L+G + ++ TG+GKT + ++ + DG V++ L + Sbjct 235 QEASITPILKGNDALVKAQTGSGKTLSYLIPVVQKLTEQRVTRSDGCYCVIITPTRELSS 294 Query 62 QHGEEFRRMLDGRWTV--TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 Q EE +++L + + + G A + + ++L+ T L L + + Sbjct 295 QIYEELQKLLKPFYWIVPGIIMGGENRSAEKARIRKGINILVATPGRLLDHLQNTQS--- 351 Query 120 VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLD 179 ++DE + L+L ++ T + LD Sbjct 352 FPTDNIKWCILDEA-------------DKLLDLGFEKD-------------VTTIINLLD 385 Query 180 GAINHVLQLCANLDTWCIMSPQNCC-PQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMD 238 + N+ +S L S + + ++PF K+++ Sbjct 386 SKKRTMKFKRQNILVSATLSEGISRLASLSLTSPVYIGLDSKVLEKGENPFQAAEKEMLQ 445 Query 239 QIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVR 298 Q Y + K + +A ++ + + + + Sbjct 446 APKQ-----------LDQFYVEVESKERLTSLIAFIRWKTSNITIDKGDVASGNSSANSK 494 Query 299 AVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKIL 358 + ++ ++ + ER + ++ + + H +N K+ Sbjct 495 MIVFFSSCDSVDFHHYMFSNMKMDKERGVKRTKKEQIKQDKLIQQHKQKNSKIFQTGNES 554 Query 359 QRQFSSSNSPRGIIFTRTRQSAHS---LLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHM 415 + S ++ + + +++ ++ + + Sbjct 555 DDEESDNDDSDDSDSNNSDSETDEEKEIEKQIKEATSNPNYRVKTSVF-SVPIFKLHGEL 613 Query 416 TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA 474 Q+ + + F++ +L+ T V+ GLD+P N +V+Y ++ + GR AR Sbjct 614 DQQTRTKTFFDFKNSPNGILLTTDVSARGLDLPSVNWIVQYDPCSDTKDYIHRIGRTARL 673 Query 475 DQSVYAFVA 483 + + Sbjct 674 GNQGCSLLF 682 >sp|Q109G2|RH12_ORYSJ DEAD-box ATP-dependent RNA helicase 12 OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g0503700 PE=2 SV=2 Length=521 Score = 96.0 bits (237), Expect = 2e-19, Method: Composition-based stats. Identities = 54/373 (14%), Positives = 111/373 (30%), Gaps = 32/373 (9%) Query 147 SQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG--------AINHVLQLCANLDTWCIM 198 + + + +P + LT S A G A+ + + ++ Sbjct 165 KGFERPSPIQEESIP--IALTGSDILARAKNGTGKTAAFCIPALEKIDPEKNAIQVVILV 222 Query 199 SPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMY 258 + Q + ++ K N+ + G LK + +++ + + + + Sbjct 223 PTRELALQTSQVCKELGKYLNI--QVMVSTGGTSLKDDIMRLYQPVHLLVGTPGRILDLT 280 Query 259 EQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKT 318 + + L + + L + ++ A + + L IH L F K Sbjct 281 RKGICVLKDCSMLVMDEADKLLAPEFQPSIEQL-IHFLPANRQLLMFSATFPVTVKDFKE 339 Query 319 QILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQ 378 + L + + + + E K+ L FS + IIF + Sbjct 340 KYLPRPYVINLMDELTLKGITQYYAFVEERQKV----HCLNTLFSKLQINQSIIFCNSVN 395 Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT 438 L + + +G M Q + V F++G LV T Sbjct 396 RVELLAKKITE--------------LGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCT 441 Query 439 SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINE 497 + G+DI NVV+ + + + GR R A I + Sbjct 442 DLFTRGIDIQAVNVVINFDFPKTSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQ 501 Query 498 ALETLMEQAVAAV 510 L T ++ + Sbjct 502 ELGTEIKTIPPQI 514 Score = 55.6 bits (132), Expect = 1e-06, Method: Composition-based stats. Identities = 30/131 (23%), Positives = 48/131 (37%), Gaps = 10/131 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA---KVVVLVNRVHLVTQH 63 Q E I AL G +I+ G GKT AA+ + +VV+LV L Q Sbjct 174 QEESIPIALTGSDILARAKNGTGKT--AAFCIPALEKIDPEKNAIQVVILVPTRELALQT 231 Query 64 GEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 + + + V +G + L + LL+ T + + L Sbjct 232 SQVCKELGKYLNIQVMVSTGGTSLKDDIMRLYQPVHLLVGTPGRILD----LTRKGICVL 287 Query 123 TVFSLIVVDEC 133 S++V+DE Sbjct 288 KDCSMLVMDEA 298 >sp|Q3ZBV2|DD19A_BOVIN ATP-dependent RNA helicase DDX19A OS=Bos taurus OX=9913 GN=DDX19A PE=2 SV=1 Length=478 Score = 95.6 bits (236), Expect = 2e-19, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 68/183 (37%), Gaps = 31/183 (17%) Query 345 GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI 404 + K + L I + + + +IF TR++A L L ++ Sbjct 314 NSRDEKFQALCNI----YGAITIAQAMIFCHTRKTASWLAAELSKE-------------- 355 Query 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL----- 459 G + S M + VI++F++G +LV T+V G+D+ +VV+ + L Sbjct 356 GHQVALLSGEMVVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDG 415 Query 460 -TNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAE 517 + + + GR R + A + + L + E ++++D + Sbjct 416 NPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSM------NILNRIQEHFNKKIERLDTDD 469 Query 518 YQA 520 Sbjct 470 LDE 472 Score = 46.7 bits (109), Expect = 7e-04, Method: Composition-based stats. Identities = 21/117 (18%), Positives = 41/117 (35%), Gaps = 5/117 (4%) Query 18 KNIIIWLPTGAGKTRAAAYVAKRHLETVDG-AKVVVLVNRVHLVTQHGEEFRRMLDGRWT 76 +N+I +G GKT A +E + + + L L Q G+ +M Sbjct 131 QNLIAQSQSGTGKTAAFVLAMLSRVEPAERYPQCLCLSPTYELALQTGKVIEQMGKFHPE 190 Query 77 VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC 133 + G + G H ++I T + + + ++ + V+DE Sbjct 191 LKLAYAVRGNKLERGQKISEH-IVIGTPGTVLD---WCSKLKFIDPKKIKVFVLDEA 243 >sp|A6RJ45|IF4A_BOTFB ATP-dependent RNA helicase eIF4A OS=Botryotinia fuckeliana (strain B05.10) OX=332648 GN=tif1 PE=3 SV=1 Length=398 Score = 94.9 bits (234), Expect = 2e-19, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 47/118 (40%), Gaps = 14/118 (12%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K + L + + + +IF TR+ L L D + G Sbjct 247 KEDWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKL------TARDFTVSAMHG---- 296 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 M Q + ++++F+ G+ +L+AT + G+D+ ++V+ Y L N + + Sbjct 297 ----DMDQGQRDLIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIH 350 Score = 59.0 bits (141), Expect = 6e-08, Method: Composition-based stats. Identities = 23/129 (18%), Positives = 45/129 (35%), Gaps = 6/129 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q IMP ++G ++I +G GKT + V ++ V + ++L L Q + Sbjct 52 QQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQKLDPNVKQCQALILAPTRELAQQIQK 111 Query 66 EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 + D G R L +++ T + + ++ Sbjct 112 VVVAIGDFMNVECHACIGGTSVRDDMKALQDGPQVVVGTPGRVHDMIQRR----FLKTDS 167 Query 125 FSLIVVDEC 133 + V+DE Sbjct 168 MKMFVLDEA 176 >sp|Q76PD3|DBP6_SCHPO ATP-dependent RNA helicase dbp6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=dbp6 PE=2 SV=1 Length=604 Score = 96.4 bits (238), Expect = 2e-19, Method: Composition-based stats. Identities = 35/189 (19%), Positives = 73/189 (39%), Gaps = 14/189 (7%) Query 357 ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT 416 +L S N + F ++ ++A L L+ L + ++ Sbjct 421 LLYHLIHSKNLTNILCFVKSNEAAARLHRLLELIHESLNQSFSCGLFT--------SSLS 472 Query 417 QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARAD 475 + +++++I +F G LNLLV + + G+D+ + V+ Y + S V GR ARA Sbjct 473 RDERKKIISRFATGDLNLLVCSDLMARGIDVANTQNVINYDPPLSVRSYVHRIGRTARAG 532 Query 476 QSVYAF-VATEGSRELKRELINEALETL-MEQAVAAVQKMDQA---EYQAKIRDLQQAAL 530 + +A+ + +L+ + TL +++ + + Y + L+ Sbjct 533 REGFAWTLVQSHEGHHFSKLVKQLRRTLPIKRIKIEFSHISEEFVVAYDKALEALRVEVF 592 Query 531 TKRAAQAAQ 539 R Q Sbjct 593 NSRYPQQKS 601 Score = 54.4 bits (129), Expect = 3e-06, Method: Composition-based stats. Identities = 27/124 (22%), Positives = 44/124 (35%), Gaps = 11/124 (9%) Query 20 IIIWLPTGAGKTRAAAYVAKRHL--ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGR-WT 76 + + TG+GKT + + L TV + VV+V L Q + F + G Sbjct 176 VCVSAATGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQVAKTFEYYMSGAGLQ 235 Query 77 VTTLSGDMGPR-----AGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVD 131 V +G R D+L+ T L + + +E L +V+D Sbjct 236 VCAWTGQKSLRHETYQLNGDENECRIDVLVSTPGRLVDHIRN---DESFSLQHLRYMVID 292 Query 132 ECHH 135 E Sbjct 293 EADR 296 >sp|Q6BKH3|DBP7_DEBHA ATP-dependent RNA helicase DBP7 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DBP7 PE=3 SV=1 Length=798 Score = 96.8 bits (239), Expect = 2e-19, Method: Composition-based stats. Identities = 68/543 (13%), Positives = 164/543 (30%), Gaps = 93/543 (17%) Query 22 IWLPTGAGKTRAAAYVAKRHLETVDGAKV--------VVLVNRVHLVTQHGEEFRRMLDG 73 + TG+GKT + L + + K+ ++LV L TQ ++ Sbjct 205 VKAQTGSGKTLSFLLPIFHKLMSEEKYKITRESGLFAIILVPTRELCTQIYGVLETLVRC 264 Query 74 RWTV--TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVD 131 + + G ++ L + ++L+ T L + + ++++ +++D Sbjct 265 HHHIVPGIVIGGEKKKSEKARLRKGVNILVATPGRLADHMENTTS---LDVSQLRWLILD 321 Query 132 ECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQL-CA 190 E +L + + ++ + SK+ I+ L Sbjct 322 EGDRLT---------------ELGFEETITKI-----TDNISKNSKISETIHKYQGLPTE 361 Query 191 NLDTWCIMSPQNCCPQLQEHS-QQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPEL 249 ++ C + Q+ +L P +++ + + + E Sbjct 362 RVNVLCSATIQDNVKKLGNMILNNPETISVDSNKQIEGTL-------------NFDDEEE 408 Query 250 SRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDF 309 F + E + + + +Q+ V LR + ++ + ++L D Sbjct 409 QNNFDSNNSEGKRMSAPDQL----IQKILVVPPKLRLVALSAMLKKLSKETNSL---DDG 461 Query 310 YHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPR 369 +R + + +F N E K E +E +S ++ Sbjct 462 VNRRTIVFFSCSDSLNFHFDVFTRNGNMFKK--RKNRETDKFETVE---VPYYSKYDN-- 514 Query 370 GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS--SQSTHMTQRDQQEVIQKF 427 + I ++G+ + ++Q+ + +Q F Sbjct 515 ------------------EDDNEEDKPSILTAPILGSNSCVYKLHGSLSQQQRATTLQAF 556 Query 428 --------QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQ-- 476 ++L T VA GLD+P+ + V+ Y + + GR AR Sbjct 557 IKEKNEGKNSAKHSILFCTDVASRGLDLPNISSVIEYDPPFSVEDHLHRIGRSARVGNEG 616 Query 477 SVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQ 536 S F+ I + + + + + + D ++ + + Sbjct 617 SAVLFLLPGNEEGYVDGKIRVVHPKEDNLRIISYEDVLKEGFAEPEEDQEEKKASTKPDP 676 Query 537 AAQ 539 + Sbjct 677 KKR 679 >sp|A7EGL7|IF4A_SCLS1 ATP-dependent RNA helicase eIF4A OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 GN=tif1 PE=3 SV=1 Length=398 Score = 94.5 bits (233), Expect = 2e-19, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 47/118 (40%), Gaps = 14/118 (12%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K + L + + + +IF TR+ L L D + G Sbjct 247 KEDWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKL------TARDFTVSAMHG---- 296 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 M Q + ++++F+ G+ +L+AT + G+D+ ++V+ Y L N + + Sbjct 297 ----DMDQGQRDLIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIH 350 Score = 59.0 bits (141), Expect = 6e-08, Method: Composition-based stats. Identities = 23/129 (18%), Positives = 45/129 (35%), Gaps = 6/129 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q IMP ++G ++I +G GKT + V ++ V + ++L L Q + Sbjct 52 QQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQKLDPNVKQCQALILAPTRELAQQIQK 111 Query 66 EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 + D G R L +++ T + + ++ Sbjct 112 VVVAIGDFMNVECHACIGGTSVRDDMKALQDGPQVVVGTPGRVHDMIQRR----FLKTDS 167 Query 125 FSLIVVDEC 133 + V+DE Sbjct 168 MKMFVLDEA 176 >sp|Q8SQK9|DHH1_ENCCU ATP-dependent RNA helicase DHH1 OS=Encephalitozoon cuniculi (strain GB-M1) OX=284813 GN=DHH1 PE=3 SV=2 Length=487 Score = 95.6 bits (236), Expect = 2e-19, Method: Composition-based stats. Identities = 57/364 (16%), Positives = 108/364 (30%), Gaps = 49/364 (13%) Query 191 NLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELS 250 NL + P +L ++ + E + Sbjct 145 NLLVRSKNGTGKTASYIVPMLNMINSSELSIQGIILVPIRELALQISRNVKRMSEGTGVI 204 Query 251 RK--FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQD 308 G + ++++S + R+ L +R L + D L D Sbjct 205 SAPVVGGTSMQDDIIRVSNGVHVMVGTPGRIVDLVEKRVGT--LSKRVILVFDEADKLLD 262 Query 309 FYHREHVTKTQILCAERRLLALFDD----RKNELAHLATHGPENPKL-EMLEKILQRQFS 363 E VTK L + + L+ P L + L + +QF Sbjct 263 VTFGETVTKLLDLLPREKQMLLYSATFPYFVTGFIRRYMKNPLCINLMKELAPVGVKQFY 322 Query 364 SSNSP-----------------RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA 406 + P + +IF + ++ L + + + +G Sbjct 323 TYVKPSEKLLCLKSLLLRLSINQCVIFCNSIKTVELLAMKITE--------------MGL 368 Query 407 GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV 466 + + M Q D+ V F G +LVAT + G+D P+ N V+ + + + S + Sbjct 369 PSYFIHSKMAQEDRNIVFHNFLKGKCKILVATDLITRGVDAPNTNYVINFDISKSPESYL 428 Query 467 QARGRA---RADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIR 523 GRA A + V TE L +E + + ++ + + Sbjct 429 HRIGRAGRFGAPGVAISLVTTEEKEML------MDIEAKLGKEISPLSDKGLSRLHESNI 482 Query 524 DLQQ 527 D Q Sbjct 483 DRNQ 486 Score = 45.9 bits (107), Expect = 0.001, Method: Composition-based stats. Identities = 23/129 (18%), Positives = 50/129 (39%), Gaps = 6/129 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE 65 Q I L GKN+++ G GKT + + + + + + ++LV L Q Sbjct 133 QVASIPHVLGGKNLLVRSKNGTGKTASYIVPMLNMINSSELSIQGIILVPIRELALQISR 192 Query 66 EFRRMLDGRWTVTT-LSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 +RM +G ++ + G + ++ +++ T + + L+ Sbjct 193 NVKRMSEGTGVISAPVVGGTSMQDDIIRVSNGVHVMVGTPGRIVDLVEKRVG----TLSK 248 Query 125 FSLIVVDEC 133 ++V DE Sbjct 249 RVILVFDEA 257 >sp|O61305|DDX19_DROME DEAD-box helicase Dbp80 OS=Drosophila melanogaster OX=7227 GN=Dbp80 PE=1 SV=1 Length=460 Score = 95.2 bits (235), Expect = 2e-19, Method: Composition-based stats. Identities = 55/358 (15%), Positives = 128/358 (36%), Gaps = 30/358 (8%) Query 171 GTGGASKLDGAINHVLQLCANLDTWCIMSPQ-NCCPQLQEHSQQPCKQYNLCHRRSQDPF 229 GTG + A+ + +C N +SP Q E + + + R Sbjct 122 GTGKTAAFVLAMLSRVNVCLNHPQVLCLSPTYELAIQTGEVAARMGQFCREIKLRFAVRG 181 Query 230 GDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND 289 ++ + + H + P +G + + K+S + L E V ++ Sbjct 182 EEVDRSKKIEEHILIGTPGKLLDWGIKFRLFDMKKIS----VFVLDEADVMIATQGHHDQ 237 Query 290 ALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENP 349 + IH + + Y +E + +++ A+ ++ L + ++ L ++ + + Sbjct 238 CIRIHKMLNPHCQMLFFSATYGKEVMDFARLIVADPTIIRLMREEES-LENIKQYYVKCK 296 Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 E +Q + + + IIF T+++A L + G + Sbjct 297 NEEGKYNAIQNIYGCISVGQAIIFCHTKRTAAWLAAKMTSD--------------GHSVA 342 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE------I 463 + +T + +V+ +F+ G +L+ T++ G+DI VVV + L + Sbjct 343 VLTGDLTVVQRLDVLDRFRSGLEKVLITTNILSRGIDIEQLQVVVNFDLPVDLDGMADCE 402 Query 464 SMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA 520 + + GR R +S A + +K + +E + + + + + Sbjct 403 TYLHRIGRTGRFGKSGIAINLITDEKTMK---VCSDIEKHFNKKIEVLNTDSADDIEK 457 Score = 47.5 bits (111), Expect = 3e-04, Method: Composition-based stats. Identities = 31/185 (17%), Positives = 58/185 (31%), Gaps = 22/185 (12%) Query 18 KNIIIWLPTGAGKTRAAAYVAKRHLETV-DGAKVVVLVNRVHLVTQHGEEFRRMLDGRWT 76 +N+I +G GKT A + + +V+ L L Q GE RM Sbjct 113 QNMIAQSQSGTGKTAAFVLAMLSRVNVCLNHPQVLCLSPTYELAIQTGEVAARMGQFCRE 172 Query 77 VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC--- 133 + G H +LI T L + ++ S+ V+DE Sbjct 173 IKLRFAVRGEEVDRSKKIEEH-ILIGTPGKLLD---WGIKFRLFDMKKISVFVLDEADVM 228 Query 134 -----HH--THKDT----VYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAI 182 HH + + M + + +++ A P + + ++ Sbjct 229 IATQGHHDQCIRIHKMLNPHCQ-MLFFSATYGKEVMDFARLI--VADPTIIRLMREEESL 285 Query 183 NHVLQ 187 ++ Q Sbjct 286 ENIKQ 290 >sp|A1DNG2|DBP10_NEOFI ATP-dependent RNA helicase dbp10 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dbp10 PE=3 SV=1 Length=934 Score = 96.8 bits (239), Expect = 2e-19, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 47/126 (37%), Gaps = 15/126 (12%) Query 363 SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE 422 S I+F T+ L L + G S + Q ++ Sbjct 370 ESPTKHSTIVFAATKHHVDYLYSLLSEA--------------GFAVSYVYGSLDQTARKI 415 Query 423 VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF 481 +Q F+ G N+LV T VA G+DIP V+ Y + + GR ARA + +++ Sbjct 416 QVQNFRTGMTNILVVTDVAARGIDIPILANVINYDFPSQPKIFIHRVGRTARAGRKGWSY 475 Query 482 VATEGS 487 + Sbjct 476 SLVRDA 481 Score = 47.1 bits (110), Expect = 5e-04, Method: Composition-based stats. Identities = 26/125 (21%), Positives = 49/125 (39%), Gaps = 8/125 (6%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRHLE---TVDGAKVVVLVNRVHLVTQHGEEFRRML 71 ++ ++++ TG+GKT A L+ T GA+ ++L L Q + + + Sbjct 125 MDDQDVVGMARTGSGKTAAFVIPMIEKLKSHSTKVGARGLILSPSRELALQTLKVVKELG 184 Query 72 DG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV 130 G L G F +A D++I T + E +++L+ +V Sbjct 185 RGTDLKSVLLVGGDSLEEQFAMMAGNPDIVIATPGRFLH----LKVEMNLDLSSIRYVVF 240 Query 131 DECHH 135 DE Sbjct 241 DEADR 245 >sp|P0CQ70|IF4A_CRYNJ ATP-dependent RNA helicase eIF4A OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=TIF1 PE=3 SV=1 Length=401 Score = 94.5 bits (233), Expect = 2e-19, Method: Composition-based stats. Identities = 29/154 (19%), Positives = 64/154 (42%), Gaps = 19/154 (12%) Query 315 VTKTQILCAERRLLALFDDRKNELAHLATH-GPENPKLEMLEKILQRQFSSSNSPRGIIF 373 VTK + R L+ + + + E KLE L + + + + +IF Sbjct 218 VTKKFMRDPIRILVKKDELTLEGIRQFYINVEKEEWKLETLCDL----YETVTITQAVIF 273 Query 374 TRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN 433 TR+ L L +Q S+ M Q +++ ++++F+ G+ Sbjct 274 CSTRRKVDWLTQQLHDRQ--------------FTVSAMHGDMKQEEREVIMKEFRSGSSR 319 Query 434 LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 +L+ T + G+D+ ++V+ Y L +++ + + Sbjct 320 VLITTDLLARGIDVQQVSLVINYDLPSSKENYIH 353 Score = 46.3 bits (108), Expect = 6e-04, Method: Composition-based stats. Identities = 24/129 (19%), Positives = 44/129 (34%), Gaps = 6/129 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q IMP + G++ I +G GKT + + +R TV + +VL L Q + Sbjct 55 QQRAIMPIVTGRDCIAQAQSGTGKTATFSVSILQRIDTTVKKTQALVLAPTRELAQQIQK 114 Query 66 EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 + D G R L +++ T + + ++ Sbjct 115 VVIALGDYLNVDCHACVGGTAVREDIARLNEGPHIVVGTPGRVFDMIN----RGALKTEA 170 Query 125 FSLIVVDEC 133 + +DE Sbjct 171 VMMFCLDEA 179 >sp|P0CQ71|IF4A_CRYNB ATP-dependent RNA helicase eIF4A OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=TIF1 PE=3 SV=1 Length=401 Score = 94.5 bits (233), Expect = 2e-19, Method: Composition-based stats. Identities = 29/154 (19%), Positives = 64/154 (42%), Gaps = 19/154 (12%) Query 315 VTKTQILCAERRLLALFDDRKNELAHLATH-GPENPKLEMLEKILQRQFSSSNSPRGIIF 373 VTK + R L+ + + + E KLE L + + + + +IF Sbjct 218 VTKKFMRDPIRILVKKDELTLEGIRQFYINVEKEEWKLETLCDL----YETVTITQAVIF 273 Query 374 TRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN 433 TR+ L L +Q S+ M Q +++ ++++F+ G+ Sbjct 274 CSTRRKVDWLTQQLHDRQ--------------FTVSAMHGDMKQEEREVIMKEFRSGSSR 319 Query 434 LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 +L+ T + G+D+ ++V+ Y L +++ + + Sbjct 320 VLITTDLLARGIDVQQVSLVINYDLPSSKENYIH 353 Score = 46.3 bits (108), Expect = 6e-04, Method: Composition-based stats. Identities = 24/129 (19%), Positives = 44/129 (34%), Gaps = 6/129 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q IMP + G++ I +G GKT + + +R TV + +VL L Q + Sbjct 55 QQRAIMPIVTGRDCIAQAQSGTGKTATFSVSILQRIDTTVKKTQALVLAPTRELAQQIQK 114 Query 66 EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 + D G R L +++ T + + ++ Sbjct 115 VVIALGDYLNVDCHACVGGTAVREDIARLNEGPHIVVGTPGRVFDMIN----RGALKTEA 170 Query 125 FSLIVVDEC 133 + +DE Sbjct 171 VMMFCLDEA 179 >sp|Q9VNV3|DDX1_DROME ATP-dependent RNA helicase Ddx1 OS=Drosophila melanogaster OX=7227 GN=Ddx1 PE=2 SV=1 Length=727 Score = 96.4 bits (238), Expect = 2e-19, Method: Composition-based stats. Identities = 34/148 (23%), Positives = 61/148 (41%), Gaps = 19/148 (13%) Query 342 ATHGPENPK--LEMLEKILQRQF-----SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQ 394 H + K L K+L+ ++ N R IIF RT+Q +L +L+Q+ G Sbjct 473 NVHPGNHSKETLSQAVKLLKGEYCVHAIDKHNMDRAIIFCRTKQDCDNLERFLRQRGGKH 532 Query 395 TVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV 454 + ++++E ++ F+ + L+ T VA GLDI ++ Sbjct 533 YSCV-----------CLHGDRKPQERKENLEMFKRQQVKFLICTDVAARGLDITGLPFMI 581 Query 455 RYGLLTNEISMVQARGR-ARADQSVYAF 481 L ++ + V GR RA++ A Sbjct 582 NVTLPDDKTNYVHRIGRVGRAERMGLAI 609 >sp|A3LX02|SPB4_PICST ATP-dependent rRNA helicase SPB4 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) OX=322104 GN=SPB4 PE=3 SV=2 Length=617 Score = 96.0 bits (237), Expect = 2e-19, Method: Composition-based stats. Identities = 59/356 (17%), Positives = 116/356 (33%), Gaps = 19/356 (5%) Query 194 TWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKF 253 I S N + + P K L S DL + L D+ H + P F Sbjct 106 ASQIQSVFNNVIEYLPEDKIPIKTQLLVGSLSTVR-DDLDRFLKDKPHILIATPGRMLDF 164 Query 254 GTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHRE 313 + Y VK++ + ++ + +L + L + Sbjct 165 MSSQY----VKMNSVEIAILDEADKLLDFSFEKDVVNILKRLPKQRRTGLFSATISAAGN 220 Query 314 HVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIF 373 + + + + + N + E L + + I++ Sbjct 221 TIFRAGMNNPVKVAVKSKSTTANSAPSALHISYLMIEPEKKITTLIKLLHDYRYKKCIVY 280 Query 374 TRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTL- 432 T S Q+ + S + + + +Q F DG + Sbjct 281 FPTCTSVKHFYSIFQKIVNGNDNTESFKFY------SLHGQLATKPRLRTLQSFTDGDVA 334 Query 433 ---NLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGS 487 ++L+ T VA G+DIP ++V++ T+ + GR RA++ A + +GS Sbjct 335 LNKHILMTTDVAARGIDIPDVDLVIQLDPPTDPDVFLHRCGRTGRANKVGRAIVMLNDGS 394 Query 488 RELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQ 543 REL E M++ ++Q+++Q L++ L RA ++ Sbjct 395 RELDYVDFMEVKGVAMQEMPTP--DLNQSDHQQFQDKLRKYMLDDRARHEIAIKSY 448 Score = 42.9 bits (99), Expect = 0.009, Method: Composition-based stats. Identities = 23/140 (16%), Positives = 49/140 (35%), Gaps = 28/140 (20%) Query 18 KNIIIWLPTGAGKTR---AAAY--VAKRHLETVDGAKV-----------VVLVNRVHLVT 61 K++++ TG+GKT V+ R ++ + + +VL L + Sbjct 48 KDVVVEAVTGSGKTLAFAIPVLQKVSNRLYDSQEEGEAPEKVKQGHMLAIVLSPTRELAS 107 Query 62 QHGEEFRRML------DGRWTVTTLSGDMGPRAGFGH--LARCHDLLICTAELLQMALTS 113 Q F ++ L G + L +LI T + ++S Sbjct 108 QIQSVFNNVIEYLPEDKIPIKTQLLVGSLSTVRDDLDRFLKDKPHILIATPGRMLDFMSS 167 Query 114 PEEEEHVELTVFSLIVVDEC 133 ++V++ + ++DE Sbjct 168 ----QYVKMNSVEIAILDEA 183 >sp|A7EIX7|SUB2_SCLS1 ATP-dependent RNA helicase sub2 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 GN=sub2 PE=3 SV=1 Length=444 Score = 94.9 bits (234), Expect = 2e-19, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 65/175 (37%), Gaps = 22/175 (13%) Query 338 LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD 397 L E K L ++L + + IIF ++ A L L++ Sbjct 278 LQQYYIKLEEREKNRRLNELLDEL----SFNQVIIFVKSTVRATELDKLLRECNFPSV-- 331 Query 398 IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG 457 + + ++Q ++ + F+D + VAT V G+D+ N+ + Y Sbjct 332 ------------AIHSGVSQEERIKRFNDFKDFNKRICVATDVFGRGIDVNKINLAINYD 379 Query 458 LLTNEISMVQARGRARADQS---VYAFVATEGSRELKRELINEALETLMEQAVAA 509 L + S + GRA + +FV+ E +E+ + + + E + + Sbjct 380 LPPDADSYLHRVGRAGRFGTKGLAISFVSNEADQEVLKA-VEKRFEVALPEYPEG 433 Score = 44.4 bits (103), Expect = 0.003, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 54/134 (40%), Gaps = 12/134 (9%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG-AKVVVLVNRVHLVTQHGE 65 Q I A+ G +++ +G GKT + +E V G V+V+ + L Q Sbjct 86 QQVCIPQAILGTDVLCQAKSGLGKTAVFVLTTLQQVEVVAGETSVLVMCHTRELAYQIRN 145 Query 66 EFR--RMLDGRWTVTTLSGDMGPRAGFGHLARCHD----LLICTAELLQMALTSPEEEEH 119 E++ + G + P + + + + +++ T L AL +++ Sbjct 146 EYQRFCHFMPDVKIGVFYGGV-PISKDVEVLKNPETHPHIIVGTPGRL-NAL---VRDKY 200 Query 120 VELTVFSLIVVDEC 133 + L + V+DEC Sbjct 201 LRLNSVKVFVLDEC 214 >sp|Q02748|IF4A_DROME Eukaryotic initiation factor 4A OS=Drosophila melanogaster OX=7227 GN=eIF4A PE=1 SV=3 Length=403 Score = 94.5 bits (233), Expect = 2e-19, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 55/121 (45%), Gaps = 18/121 (15%) Query 347 ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA 406 EN KL L + + + + + +IF TR+ L Q + + + G Sbjct 253 ENWKLGTLCDL----YDTLSITQSVIFCNTRRKVDQLT------QEMSIHNFTVSAMHG- 301 Query 407 GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV 466 M QRD++ ++++F+ G+ +L+ T + G+D+ ++V+ Y L +N + + Sbjct 302 -------DMEQRDREVIMKQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYI 354 Query 467 Q 467 Sbjct 355 H 355 Score = 51.3 bits (121), Expect = 2e-05, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 44/129 (34%), Gaps = 6/129 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQ-HG 64 Q I+P + G+++I +G GKT + + ++ ++ + ++L L TQ Sbjct 57 QQRAIIPCVRGRDVIAQAQSGTGKTATFSIAILQQIDTSIRECQALILAPTRELATQIQR 116 Query 65 EEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 + G R L +++ T + + + Sbjct 117 VVMALGEYMKVHSHACIGGTNVREDARILESGCHVVVGTPGRVYDMINRKV----LRTQY 172 Query 125 FSLIVVDEC 133 L V+DE Sbjct 173 IKLFVLDEA 181 >sp|A9IR19|UVRB_BORPD UvrABC system protein B OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) OX=340100 GN=uvrB PE=3 SV=1 Length=675 Score = 96.0 bits (237), Expect = 3e-19, Method: Composition-based stats. Identities = 87/564 (15%), Positives = 179/564 (32%), Gaps = 114/564 (20%) Query 26 TGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTVTTLS---- 81 TG+GKT A + R G +VL L Q E R +S Sbjct 50 TGSGKTYTMANIIARL-----GRPALVLAPNKTLAAQLYAEMREFFPKNAVEYFVSYYDY 104 Query 82 ------------------------GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE 117 M A L R +++ T + + Sbjct 105 YQPEAYVPTRDLFIEKDSSINEHIEQMRLSATKSLLERRDTVIVGTVSCIYGIGNPGDYH 164 Query 118 EHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASK 177 V + + + ++ + ++ QY A+ +V G T + + Sbjct 165 AMVLILRAGDRI------SRREVLARLVAMQYTRNDADFARGTFRVRGETLDIFPAESPE 218 Query 178 LDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLM 237 L + +L+ + ++ + +++ + + +D ++ + Sbjct 219 LALRLTLFDDEIESLELFDPLTGR-----VRQKVPRFTVYPGSHYVTPRDTVLRAIETIK 273 Query 238 DQIHDHLEMPELSRKF-GTQMYEQQVVKLSEAAALAGLQEQ-RVYALHLRRYND------ 289 +++ D L++ K Q EQ+ E G + Y+ HL Sbjct 274 EELRDRLKLLTAEGKLVEAQRLEQRTRFDLEMLQELGFCKGIENYSRHLSGAAPGEPPPT 333 Query 290 --ALLIHDTVRAVDA----LAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLAT 343 L D + +D + L Y + K ++ RL + D+R L Sbjct 334 LIDYLPADALMFIDESHVTMGQLGGMYRGDRARKETLVQYGFRLPSALDNRPLRLEEFEA 393 Query 344 H------------------------------GPENPKLEM------LEKILQR-QFSSSN 366 G +P++E+ ++ +L + + Sbjct 394 RMRQCVFVSATPAAYEQEHSDNVVEQVVRPTGLVDPQVEVRPARTQVDDLLGEIKLRVAA 453 Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 R ++ T T++ A L +L + G + + ++ E+I+ Sbjct 454 QERVLVTTLTKRMAEDLTDFLAE--------------HGVRVRYLHSDIDTVERVEIIRD 499 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + GT ++LV ++ EGLDIP ++V L +E S++Q GRA + + +A Sbjct 500 LRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGHAI 559 Query 482 VATEGSRELKRELINEALETLMEQ 505 + + R ++E +Q Sbjct 560 LYADAITASMRRAMDETERRRTKQ 583 >sp|Q0CMM8|DBP10_ASPTN ATP-dependent RNA helicase dbp10 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=dbp10 PE=3 SV=1 Length=928 Score = 96.4 bits (238), Expect = 3e-19, Method: Composition-based stats. Identities = 45/271 (17%), Positives = 90/271 (33%), Gaps = 29/271 (11%) Query 218 YNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQ 277 ++ R + F L +++ + + S + E L E + E Sbjct 239 FDEADRLFEMGFAAQLTEILHGLPTTRQTLLFSATLPKSLVEFARAGLQEPTLIRLDTES 298 Query 278 RVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNE 337 ++ + +V++ D AL H ++ + + K Sbjct 299 KISPDLQNAFF-------SVKSADKEGALLYILH----EVIKMPTGPTEVAQRLQEEKAN 347 Query 338 LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD 397 + + K ++K + + S + I+F T+ L L++ Sbjct 348 SKD--SKNSKKRKRSEMDKAVNMKESPTKHS-TIVFAATKHHVDYLYSLLREA------- 397 Query 398 IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG 457 G S + Q ++ + F+ G N+LV T VA G+DIP V+ Y Sbjct 398 -------GFAVSYAYGSLDQTARKIQVNNFRTGLSNILVVTDVAARGIDIPILANVINYD 450 Query 458 LLTNEISMVQARGR-ARADQSVYAFVATEGS 487 + V GR ARA + +++ + Sbjct 451 FPSQPKIFVHRVGRTARAGRKGWSYSLVRDA 481 Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 42/114 (37%), Gaps = 8/114 (7%) Query 26 TGAGKTRAAAYVAKRHLETVDGA---KVVVLVNRVHLVTQHGEEFRRMLDG-RWTVTTLS 81 TG+GKT A L++ + ++L L Q + + + G L Sbjct 135 TGSGKTAAFVIPMIEKLKSHSSKFGARGLILSPSRELALQTLKVVKELGKGTDLKSVLLV 194 Query 82 GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH 135 G FG +A D++I T + E +++L+ +V DE Sbjct 195 GGDSLEEQFGMMAGNPDIVIATPGRFLH----LKVEMNLDLSSIRYVVFDEADR 244 >sp|Q86B47|Y8611_DROME Probable ATP-dependent RNA helicase CG8611 OS=Drosophila melanogaster OX=7227 GN=CG8611 PE=1 SV=1 Length=975 Score = 96.4 bits (238), Expect = 3e-19, Method: Composition-based stats. Identities = 78/418 (19%), Positives = 140/418 (33%), Gaps = 37/418 (9%) Query 141 VYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCI--- 197 Y + + + L+ + R Q VL L P + I +++ + + Sbjct 381 AYALPLVELLQKQQPRIQRKDGVLALVIVPTRELVMQTYELIQKLVKPYTWIVPGSLLGG 440 Query 198 MSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI-------------HDHL 244 S ++ +L++ L KL I D Sbjct 441 ESRKSEKARLRKGINILIGTPGRLVDHLLHTASFKLTKLQFLILDEADRLLELGYERDVK 500 Query 245 EMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALA 304 ++ E K + ++++ +L A L Q L N + + A AL Sbjct 501 QLVEAIDKQRAECEDKELPQLQRMLLSATLTSQVQQLAGLTLKNPLYIDNSDEAASAALK 560 Query 305 ALQDFYHREHVTKTQI----LCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQR 360 + +D Y +E + L + + L P +L L +L + Sbjct 561 S-KDGYQKETIEALLEVDDGLGEYQEDVTGVLSIPENLQLSYVVVPPKLRLVALSSLLAK 619 Query 361 QFSSS-NSPRGIIFTRTRQSA----HSLLLWL---------QQQQGLQTVDIRAQLLIGA 406 + +S + I+F T + L L +Q++G D LL G Sbjct 620 EVDASPKQFKAIVFMSTTEMVNFHHDMLNEALTRRVLDEEDEQEKGDSDDDGDIPLLQGL 679 Query 407 GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV 466 MTQ ++Q V + F+D +L+AT V G+D+P +VV+Y V Sbjct 680 RFFKLHGSMTQTERQGVFRGFRDCASCVLLATDVVGRGIDVPDIKLVVQYTPPQTTADFV 739 Query 467 QARGR-ARADQSVYA-FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKI 522 GR ARA + A T + R L + + A +Q + + +A+ Sbjct 740 HRVGRTARAGRKGRAVLFLTPSEAQFVRHLEKKRIRIQQGDMYAYLQTLLPKDDEART 797 Score = 60.6 bits (145), Expect = 4e-08, Method: Composition-based stats. Identities = 33/138 (24%), Positives = 57/138 (41%), Gaps = 12/138 (9%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLET-------VDGAKVVVLVNRVHL 59 Q + I L+GK++++ TG+GKT A A L+ DG +V+V L Sbjct 355 QQKTIPEVLQGKDVLVRSQTGSGKTLAYALPLVELLQKQQPRIQRKDGVLALVIVPTREL 414 Query 60 VTQHGEEFRRMLDG--RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE 117 V Q E ++++ +L G ++ L + ++LI T L L Sbjct 415 VMQTYELIQKLVKPYTWIVPGSLLGGESRKSEKARLRKGINILIGTPGRLVDHLL---HT 471 Query 118 EHVELTVFSLIVVDECHH 135 +LT +++DE Sbjct 472 ASFKLTKLQFLILDEADR 489 >sp|A1CTZ6|DBP10_ASPCL ATP-dependent RNA helicase dbp10 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=dbp10 PE=3 SV=1 Length=935 Score = 96.4 bits (238), Expect = 3e-19, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 47/126 (37%), Gaps = 15/126 (12%) Query 363 SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE 422 S I+F T+ L L + G S + Q ++ Sbjct 369 ESPTQHSTIVFAATKHHVDYLYSLLHEA--------------GFAVSYVYGALDQTARKI 414 Query 423 VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF 481 +Q F+ G N+LV T VA G+DIP V+ Y + + GR ARA + +++ Sbjct 415 QVQNFRSGLSNILVVTDVAARGIDIPILANVINYDFPSQPKIFIHRVGRTARAGRKGWSY 474 Query 482 VATEGS 487 + Sbjct 475 SLVRDA 480 Score = 45.6 bits (106), Expect = 0.001, Method: Composition-based stats. Identities = 26/125 (21%), Positives = 47/125 (38%), Gaps = 8/125 (6%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRHLE---TVDGAKVVVLVNRVHLVTQHGEEFRRML 71 ++ ++++ TG+GKT A L T GA+ ++L L Q + + + Sbjct 124 MDDQDVVGMARTGSGKTAAFVIPMIEKLRSHSTKVGARGLILSPSRELALQTLKVVKELG 183 Query 72 DG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV 130 G L G F +A D++I T + E +++L +V Sbjct 184 KGTDLKCVLLVGGDSLEEQFTMMAGNPDIVIATPGRFLH----LKVEMNLDLYSIRYVVF 239 Query 131 DECHH 135 DE Sbjct 240 DEADR 244 >sp|Q2UHC1|DBP10_ASPOR ATP-dependent RNA helicase dbp10 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=dbp10 PE=3 SV=1 Length=929 Score = 96.4 bits (238), Expect = 3e-19, Method: Composition-based stats. Identities = 30/126 (24%), Positives = 48/126 (38%), Gaps = 15/126 (12%) Query 363 SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE 422 S I+F T+ L L++ G S + Q ++ Sbjct 368 ESPTKYSTIVFAATKHHVDYLYSLLREA--------------GFAVSYAYGSLDQTARKI 413 Query 423 VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF 481 +Q F+ G N+LV T VA G+DIP V+ Y + V GR ARA + +++ Sbjct 414 QVQNFRAGLSNILVVTDVAARGIDIPILANVINYDFPSQPKIFVHRVGRTARAGRKGWSY 473 Query 482 VATEGS 487 + Sbjct 474 SLVRDA 479 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 27/125 (22%), Positives = 50/125 (40%), Gaps = 8/125 (6%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRHLE---TVDGAKVVVLVNRVHLVTQHGEEFRRML 71 ++G++++ TG+GKT A L+ T GA+ ++L L Q + + + Sbjct 124 MDGQDVVGMARTGSGKTAAFVIPMIEKLKSHSTKVGARGLILSPSRELALQTLKVVKELG 183 Query 72 DG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV 130 G L G F +A D++I T + E +++L+ +V Sbjct 184 KGTDLKSVLLVGGDSLEEQFSLMAGNPDIVIATPGRFLH----LKVEMNLDLSSIRYVVF 239 Query 131 DECHH 135 DE Sbjct 240 DEADR 244 >sp|Q9UMR2|DD19B_HUMAN ATP-dependent RNA helicase DDX19B OS=Homo sapiens OX=9606 GN=DDX19B PE=1 SV=1 Length=479 Score = 94.9 bits (234), Expect = 3e-19, Method: Composition-based stats. Identities = 32/183 (17%), Positives = 68/183 (37%), Gaps = 31/183 (17%) Query 345 GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI 404 + K + L + + + + +IF TR++A L L ++ Sbjct 315 SSRDEKFQALCNL----YGAITIAQAMIFCHTRKTASWLAAELSKE-------------- 356 Query 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL----- 459 G + S M + VI++F++G +LV T+V G+D+ +VV+ + L Sbjct 357 GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDG 416 Query 460 -TNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAE 517 + + + GR R + A + + L + E ++++D + Sbjct 417 NPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSM------NILNRIQEHFNKKIERLDTDD 470 Query 518 YQA 520 Sbjct 471 LDE 473 Score = 47.1 bits (110), Expect = 4e-04, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 5/117 (4%) Query 18 KNIIIWLPTGAGKTRAAAYVAKRHLETVDG-AKVVVLVNRVHLVTQHGEEFRRMLDGRWT 76 +N+I +G GKT A +E + + + L L Q G+ +M Sbjct 132 QNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPE 191 Query 77 VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC 133 + G + G ++I T + + + ++ + V+DE Sbjct 192 LKLAYAVRGNKLERGQKISE-QIVIGTPGTVLD---WCSKLKFIDPKKIKVFVLDEA 244 >sp|Q7S9J4|DBP10_NEUCR ATP-dependent RNA helicase dbp-10 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=dbp-10 PE=3 SV=1 Length=934 Score = 96.0 bits (237), Expect = 3e-19, Method: Composition-based stats. Identities = 52/315 (17%), Positives = 92/315 (29%), Gaps = 58/315 (18%) Query 179 DGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNL---CHRRSQDPFGDLLKK 235 D + +N D + +++ + +Y + R + F L + Sbjct 207 DSLEEQFGMMASNPDIIIATPGRFLHLKVEMNLSLASIKYVVFDEADRLFEMGFATELTE 266 Query 236 LMDQIHDHLEMPELSRKF--------GTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRY 287 ++ + + S + E +V+L ++ E +A+ Sbjct 267 ILHALPPSRQTLLFSATLPSSLVEFARAGLQEPSLVRLDAETKVSPDLESAFFAVKGGEK 326 Query 288 NDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPE 347 ALL L + + + E R Sbjct 327 EGALLHLLHDVIKVPLGPPEGTKEESDELQARKRKREYR--------------------P 366 Query 348 NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG 407 NPK IIFT T+ + L+ L G Sbjct 367 NPK------------EKPTEYSTIIFTATKHHVEYIANLLK--------------LAGFA 400 Query 408 NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 S + Q + + F+ G ++LV T VA G+D+P V+ Y + V Sbjct 401 VSYVYGSLDQTARLIQVDNFRRGRTHILVVTDVAARGIDMPALANVINYDFPSQPKIFVH 460 Query 468 ARGR-ARADQSVYAF 481 GR ARA Q +A+ Sbjct 461 RVGRTARAGQRGWAY 475 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 48/125 (38%), Gaps = 8/125 (6%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVD---GAKVVVLVNRVHLVTQHGEEFRRML 71 LE K+++ TG+GKT A L+ G++ +++ L Q + + + Sbjct 134 LERKDVVGMARTGSGKTAAFVIPMIERLKGHSPRVGSRALIMSPSRELALQTLKVVKELG 193 Query 72 DGRWTVT-TLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV 130 G T L G FG +A D++I T + E ++ L +V Sbjct 194 RGTDLKTVLLVGGDSLEEQFGMMASNPDIIIATPGRFLH----LKVEMNLSLASIKYVVF 249 Query 131 DECHH 135 DE Sbjct 250 DEADR 254 >sp|A4REU9|MAK5_PYRO7 ATP-dependent RNA helicase MAK5 OS=Pyricularia oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 GN=MAK5 PE=3 SV=2 Length=760 Score = 96.0 bits (237), Expect = 4e-19, Method: Composition-based stats. Identities = 54/324 (17%), Positives = 97/324 (30%), Gaps = 37/324 (11%) Query 165 GLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRR 224 GL SP + QL ++ ++ S + + + Sbjct 294 GLATSPYVCSVTGGLSVHKQQRQLE---KADIVVGTPGRLWEVLSSSTKLIQAFRGIKFL 350 Query 225 SQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHL 284 D LL + D ++ E K T + + G + ++ Sbjct 351 VVDEADRLLSE--GHFKDAKDIFEGLDKVETD----------DDGIIRGGKARQTLVFSA 398 Query 285 RRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATH 344 D Q + K + + + L Sbjct 399 TFNKGLQQKLAGKGRFDLATDSQSMEYLLKKLKFREEIPKFIDVNPVSQMAEGLKEGIVE 458 Query 345 GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI 404 K L +L + R ++FT + S L LQQ Sbjct 459 CGAMEKDLYLYSLLLMH----PTQRTLVFTNSISSVRRLTPMLQQLTLPVI--------- 505 Query 405 GAGNSSQSTHMTQRDQQEVIQKF---QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN 461 + + M Q+ + +++F + G+ ++L+AT VA GLDI +VV+ Y + Sbjct 506 -----ALHSQMIQKARLRSVERFTSSKPGSASILIATDVAARGLDIRGIDVVIHYHVPRT 560 Query 462 EISMVQARGR-ARADQSVYAFVAT 484 + V GR ARAD S + + Sbjct 561 ADAYVHRSGRTARADSSGLSILIC 584 Score = 41.7 bits (96), Expect = 0.022, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 48/138 (35%), Gaps = 19/138 (14%) Query 15 LEGKNIIIWLPTGAGKTRA-------------AAYVAKRHLETVDGAKV-VVLVNRVHLV 60 L G +++ TG+GKT A A+ +KR E + +VL L Sbjct 222 LAGHDVVGKASTGSGKTLAFGIPIVEKWLSINASTQSKRVAEGETKTPIALVLSPTRELA 281 Query 61 TQ---HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE 117 Q H + L V +++G + D+++ T L L+S + Sbjct 282 HQLTDHIKNLCAGLATSPYVCSVTGGLSVHKQ-QRQLEKADIVVGTPGRLWEVLSSSTKL 340 Query 118 EHVELTVFSLIVVDECHH 135 +VVDE Sbjct 341 -IQAFRGIKFLVVDEADR 357 >sp|A2QRY2|DBP10_ASPNC ATP-dependent RNA helicase dbp10 OS=Aspergillus niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) OX=425011 GN=dbp10 PE=3 SV=1 Length=932 Score = 96.0 bits (237), Expect = 4e-19, Method: Composition-based stats. Identities = 31/126 (25%), Positives = 47/126 (37%), Gaps = 15/126 (12%) Query 363 SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE 422 S IIF T+ L L + G S + Q ++ Sbjct 370 ESPTKHSTIIFAATKHHVDYLYSLLNEA--------------GFATSYAYGSLDQTARKI 415 Query 423 VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF 481 + F+ G N+LV T VA G+DIP V+ Y + V GR ARA ++ +++ Sbjct 416 QVHNFRTGISNILVVTDVAARGIDIPILANVINYDFPSQAKIFVHRVGRTARAGRTGWSY 475 Query 482 VATEGS 487 S Sbjct 476 SLVRDS 481 Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats. Identities = 26/125 (21%), Positives = 50/125 (40%), Gaps = 8/125 (6%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVD---GAKVVVLVNRVHLVTQHGEEFRRML 71 +E ++++ TG+GKT A + L++ GA+ ++L L Q + + + Sbjct 125 MEDQDVVGMARTGSGKTAAFVIPMIQKLKSHSTQVGARGLILSPSRELALQTLKVVKELG 184 Query 72 DG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV 130 G L G F +A D++I T + E +++L+ +V Sbjct 185 KGTDLKAVLLVGGDSLEEQFSMMAGNPDIVIATPGRFLH----LKVEMNLDLSSIRYVVF 240 Query 131 DECHH 135 DE Sbjct 241 DEADR 245 >sp|Q9SF41|RH45_ARATH DEAD-box ATP-dependent RNA helicase 45 OS=Arabidopsis thaliana OX=3702 GN=RH45 PE=3 SV=1 Length=989 Score = 96.0 bits (237), Expect = 4e-19, Method: Composition-based stats. Identities = 35/144 (24%), Positives = 60/144 (42%), Gaps = 3/144 (2%) Query 387 LQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLD 446 L + + R L+G + R Q++ I F+ NLL+ATSVA GLD Sbjct 620 LVEIRPESERFSRLLELLGEWYEKGKVLVFVRSQEKSISDFKSDVCNLLIATSVAARGLD 679 Query 447 IPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEGSRELKRELINEALETLME 504 + +VV + + V GR RA + A +E + +L+ +ALE + Sbjct 680 VKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDLV-KALELSEQ 738 Query 505 QAVAAVQKMDQAEYQAKIRDLQQA 528 V+ + + + ++QA Sbjct 739 PVPDDVKAVAEGFMAKVKQGIEQA 762 Score = 61.0 bits (146), Expect = 3e-08, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 51/136 (38%), Gaps = 8/136 (6%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKV------VVLVNRVHLV 60 Q + + + G++ I TG+GKT RH++ + +V+ LV Sbjct 423 QAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELV 482 Query 61 TQHGEEFRRMLDGRWTVTT-LSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 Q + R+ + + G G L R ++++CT + L + + Sbjct 483 QQIYSDIRKFSKALGIICVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGK-I 541 Query 120 VELTVFSLIVVDECHH 135 L + +V+DE Sbjct 542 TNLRRVTYLVMDEADR 557 >sp|Q9NUU7|DD19A_HUMAN ATP-dependent RNA helicase DDX19A OS=Homo sapiens OX=9606 GN=DDX19A PE=1 SV=1 Length=478 Score = 94.5 bits (233), Expect = 4e-19, Method: Composition-based stats. Identities = 32/183 (17%), Positives = 68/183 (37%), Gaps = 31/183 (17%) Query 345 GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI 404 + K + L + + + + +IF TR++A L L ++ Sbjct 314 SSRDEKFQALCNL----YGAITIAQAMIFCHTRKTASWLAAELSKE-------------- 355 Query 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL----- 459 G + S M + VI++F++G +LV T+V G+D+ +VV+ + L Sbjct 356 GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDG 415 Query 460 -TNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAE 517 + + + GR R + A + + L + E ++++D + Sbjct 416 NPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSM------NILNRIQEHFNKKIERLDTDD 469 Query 518 YQA 520 Sbjct 470 LDE 472 Score = 47.1 bits (110), Expect = 5e-04, Method: Composition-based stats. Identities = 21/117 (18%), Positives = 40/117 (34%), Gaps = 5/117 (4%) Query 18 KNIIIWLPTGAGKTRAAAYVAKRHLETVDG-AKVVVLVNRVHLVTQHGEEFRRMLDGRWT 76 +N+I +G GKT A +E D + + L L Q G+ +M Sbjct 131 QNLIAQSQSGTGKTAAFVLAMLSRVEPSDRYPQCLCLSPTYELALQTGKVIEQMGKFYPE 190 Query 77 VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC 133 + G + G ++I T + + + ++ + V+DE Sbjct 191 LKLAYAVRGNKLERGQKISE-QIVIGTPGTVLD---WCSKLKFIDPKKIKVFVLDEA 243 >sp|Q61655|DD19A_MOUSE ATP-dependent RNA helicase DDX19A OS=Mus musculus OX=10090 GN=Ddx19a PE=1 SV=2 Length=478 Score = 94.5 bits (233), Expect = 4e-19, Method: Composition-based stats. Identities = 32/183 (17%), Positives = 67/183 (37%), Gaps = 31/183 (17%) Query 345 GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI 404 K + L + + + + +IF TR++A L L ++ Sbjct 314 NNREEKFQALCNL----YGAITIAQAMIFCHTRKTASWLAAELSKE-------------- 355 Query 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL----- 459 G + S M + VI++F++G +LV T+V G+D+ +VV+ + L Sbjct 356 GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDG 415 Query 460 -TNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAE 517 + + + GR R + A + + L + E ++++D + Sbjct 416 NPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSM------NILNRIQEHFNKKIERLDTDD 469 Query 518 YQA 520 Sbjct 470 LDE 472 Score = 47.1 bits (110), Expect = 4e-04, Method: Composition-based stats. Identities = 21/117 (18%), Positives = 40/117 (34%), Gaps = 5/117 (4%) Query 18 KNIIIWLPTGAGKTRAAAYVAKRHLETVDG-AKVVVLVNRVHLVTQHGEEFRRMLDGRWT 76 +N+I +G GKT A +E D + + L L Q G+ +M Sbjct 131 QNLIAQSQSGTGKTAAFVLAMLSRVEPADRYPQCLCLSPTYELALQTGKVIEQMGKFHPE 190 Query 77 VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC 133 + G + G ++I T + + + ++ + V+DE Sbjct 191 LKLAYAVRGNKLERGQKVSE-QIVIGTPGTVLD---WCSKLKFIDPKKIKVFVLDEA 243 >sp|Q5UQD1|YR458_MIMIV Putative ATP-dependent RNA helicase R458 OS=Acanthamoeba polyphaga mimivirus OX=212035 GN=MIMI_R458 PE=3 SV=1 Length=524 Score = 94.9 bits (234), Expect = 5e-19, Method: Composition-based stats. Identities = 25/142 (18%), Positives = 58/142 (41%), Gaps = 16/142 (11%) Query 355 EKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH 414 ++I+ + IIF ++A+ + L +Q+ V I + + G Sbjct 371 KEIILDLLKQCRIAQAIIFANRIETANEIKKLLDEQE----VPISSAVFHG--------D 418 Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR--- 471 + ++ + + F + + LL++T + GLD+ NVV + + + + GR Sbjct 419 LPAVTRKNIHKDFVENKIRLLISTDLTSRGLDVQGINVVFNFDMPDTLETYIHRVGRSGR 478 Query 472 -ARADQSVYAFVATEGSRELKR 492 R S+ + + E+++ Sbjct 479 YGRKGVSISLILVNQNKNEMEK 500 >sp|Q8NJM2|DBP10_ASPFU ATP-dependent RNA helicase dbp10 OS=Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293) OX=330879 GN=dbp10 PE=3 SV=1 Length=869 Score = 95.6 bits (236), Expect = 5e-19, Method: Composition-based stats. Identities = 30/126 (24%), Positives = 47/126 (37%), Gaps = 15/126 (12%) Query 363 SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE 422 S I+F T+ L L + G S + Q ++ Sbjct 350 ESPTKHSTIVFAATKHHVDYLYSLLCEA--------------GFAVSYVYGSLDQTARKI 395 Query 423 VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF 481 +Q F+ G N+LV T VA G+DIP V+ Y + V GR ARA + +++ Sbjct 396 QVQNFRTGMTNILVVTDVAARGIDIPILANVINYDFPSQPKIFVHRVGRTARAGRKGWSY 455 Query 482 VATEGS 487 + Sbjct 456 SLVRDA 461 Score = 47.9 bits (112), Expect = 3e-04, Method: Composition-based stats. Identities = 27/125 (22%), Positives = 49/125 (39%), Gaps = 8/125 (6%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRHLE---TVDGAKVVVLVNRVHLVTQHGEEFRRML 71 ++ ++++ TG+GKT A L+ T GA+ +VL L Q + + + Sbjct 105 MDDQDVVGMARTGSGKTAAFVIPMIEKLKSHSTKVGARGLVLSPSRELALQTLKVVKELG 164 Query 72 DG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV 130 G L G F +A D++I T + E +++L+ +V Sbjct 165 RGTDLKSVLLVGGDSLEEQFAMIAGNPDIIIATPGRFLH----LKVEMNLDLSSIRYVVF 220 Query 131 DECHH 135 DE Sbjct 221 DEADR 225 >sp|O76743|GLH4_CAEEL ATP-dependent RNA helicase glh-4 OS=Caenorhabditis elegans OX=6239 GN=glh-4 PE=1 SV=2 Length=1156 Score = 96.0 bits (237), Expect = 5e-19, Method: Composition-based stats. Identities = 27/144 (19%), Positives = 52/144 (36%), Gaps = 19/144 (13%) Query 366 NSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQ 425 + +IF + + +L + G S ++ Q + + Sbjct 1001 EKQKTLIFVNSVKFCDTLAALISSA--------------GVSTISMHSYQNQEQRDRTLD 1046 Query 426 KFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL-----TNEISMVQARGRARADQSVYA 480 F+ G +VA++V GL+I + VV Y + ++ + GRA + A Sbjct 1047 DFRRGKYQCMVASNVCARGLNIAGLDHVVNYDMPDKNGFDEYVNRIGRTGRAGFTGTSTA 1106 Query 481 FVATEGSRELKRELINEALETLME 504 FV E ++ L++ E E Sbjct 1107 FVDVENDTDIIPCLVSILNEAKKE 1130 Score = 48.3 bits (113), Expect = 2e-04, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 50/144 (35%), Gaps = 20/144 (14%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYV-----AKRHLET-------VDGAKVVVLV 54 Q P + G +++ TG+GKT A + E +++++ Sbjct 763 QRASFFPIMHGNDVVACAHTGSGKTL-AFLIPFVIKLMEEFEKDRDVTDEKPSPRLLIVA 821 Query 55 NRVHLVTQHGEEFRRML-DGRWTVTTLSGDMGPRAGFGHL--ARCHDLLICTAELLQMAL 111 LV Q R++ + G A HL ++L+ T LQ + Sbjct 822 PTRELVNQTFTTARQLTYETGLKCGLAFGGYSRNANVQHLRSFSQLNILVATMGRLQDFV 881 Query 112 TSPEEEEHVELTVFSLIVVDECHH 135 + E V L+ IV+DE Sbjct 882 NAGE----VSLSKMKYIVLDEADR 901 >sp|Q4E162|IF4A_TRYCC Probable eukaryotic initiation factor 4A OS=Trypanosoma cruzi (strain CL Brener) OX=353153 GN=Tc00.1047053511585.190 PE=3 SV=1 Length=404 Score = 93.3 bits (230), Expect = 5e-19, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 52/116 (45%), Gaps = 14/116 (12%) Query 352 EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ 411 E L + + + + +IF TR+ L L Q S Sbjct 253 EHKLDTLMDLYETVSIAQSVIFANTRRKVDWLAQQLNQSN--------------HTVSCM 298 Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 + M ++D+++V+ F++G+ +LV T + G+D+ H N+V+ + L TN+ S + Sbjct 299 HSEMPKQDREKVMSTFRNGSSRVLVTTDLVARGIDVHHVNIVINFDLPTNKESYLH 354 Score = 44.0 bits (102), Expect = 0.003, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 45/133 (34%), Gaps = 10/133 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT-RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q I+P G +II +G GKT + + +R + + +VL L Q E Sbjct 53 QQRAIVPFTRGGDIIAQAQSGTGKTGAFSIGLLQRLDFRHNVLQGLVLSPTRELALQTAE 112 Query 66 EFRRMLDG-----RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 R+ + T G + + L + + T + + + Sbjct 113 VITRIGEFLAEGNSSFCATFVGGTRVQDDYRKLQAGSIVAVGTPGRVVDV----TKRGAM 168 Query 121 ELTVFSLIVVDEC 133 ++V+DE Sbjct 169 RTEHLRVLVLDEA 181 >sp|Q6CXT4|IF4A_KLULA ATP-dependent RNA helicase eIF4A OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=TIF1 PE=3 SV=1 Length=396 Score = 93.3 bits (230), Expect = 5e-19, Method: Composition-based stats. Identities = 20/116 (17%), Positives = 53/116 (46%), Gaps = 14/116 (12%) Query 352 EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ 411 + L + S + + +IF TR+ L L++ S+ Sbjct 246 QYKYDCLTDLYDSISVTQAVIFCNTRRKVEELTERLRENN--------------FTVSAI 291 Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 + + Q+++ ++++F+ G+ +L++T + G+D+ ++V+ Y L +N+ + + Sbjct 292 YSDLQQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYIH 347 Score = 53.6 bits (127), Expect = 3e-06, Method: Composition-based stats. Identities = 22/131 (17%), Positives = 45/131 (34%), Gaps = 10/131 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT---RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ- 62 Q I+P +EGK+++ +G GKT AA + E + + ++L L Q Sbjct 49 QQRAILPIIEGKDVLAQAQSGTGKTGTFSIAAL--QNIDEKIKAPQGLILAPTRELALQI 106 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 + V G + L +++ T + + + + Sbjct 107 QKVVMALAIHMDVKVHACIGGTSLQEDSEALRGGAQIIVGTPGRVFDMI----DRRIFKT 162 Query 123 TVFSLIVVDEC 133 + ++DE Sbjct 163 DNIKMFILDEA 173 >sp|Q8Y0N2|UVRB_RALN1 UvrABC system protein B OS=Ralstonia nicotianae (strain ATCC BAA-1114 / GMI1000) OX=267608 GN=uvrB PE=3 SV=1 Length=696 Score = 95.2 bits (235), Expect = 5e-19, Method: Composition-based stats. Identities = 82/607 (14%), Positives = 180/607 (30%), Gaps = 122/607 (20%) Query 26 TGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDG------------ 73 TG+GKT + +V L Q EFR Sbjct 60 TGSGKTYT----MANVIAQAGRPAIVF-APNKTLAAQLYSEFREFFPRNAVEYFVSYYDY 114 Query 74 ----------------RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE 117 +V M A L R +++ T + + +P E Sbjct 115 YQPEAYVPQRDLFIEKDSSVNEHIEQMRLSATKSLLERRDVVIVATVSAIY-GIGNPTEY 173 Query 118 EHVEL-----TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGT 172 + L S +D + +I QY + + +V G T Sbjct 174 HQMILTLRTGDKIS----------QRDVIARLIAMQYTRNETDFQRGTFRVRGDTVDIFP 223 Query 173 GGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDL 232 +++ + +L + ++ + ++ + P Y G + Sbjct 224 AEHAEMAVRLELFDDEVDSLQLFDPLTGR-VRQKILRFTVYPSSHYVTPRETVLRAIGTI 282 Query 233 LKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND--- 289 +L +++ + +L ++ ++ L L + Y+ HL Sbjct 283 KAELRERLDFFYQENKLVE--AQRLEQRTRFDLEMLQELGFCKGIENYSRHLSGAQPGEP 340 Query 290 ------------ALLIHDTVRAVDALAAL--QDFYHREHVTKTQILCAERRLLAL----- 330 + + ++ + L + D +E ++ Sbjct 341 PPTLVDYLPSDALMFLDESHVLIGQLNGMYNGDRARKETLSAYGFRLPSALDNRPLKFAE 400 Query 331 FDDRKNELAHLATHGPENPKLEMLEKILQR----------------------------QF 362 F+ + ++ ++ + K ++++++ Sbjct 401 FEGKMRQVVFVSATPADYEKQRAGDEVVEQVVRPTGLVDPIIHVRPATTQVDDLLSEIHE 460 Query 363 SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE 422 R ++ T T++ A L +L + G + + ++ E Sbjct 461 RVKAGERVLVTTLTKRMAEQLTEFLSEN--------------GVKVRYLHSDIDTVERVE 506 Query 423 VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQS 477 +I+ + GT ++LV ++ EGLDIP ++V L E S++Q GRA + + Sbjct 507 IIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAARNVN 566 Query 478 VYAFVATEGSRELKRELINEALETLMEQ-AVAAVQKMDQAEYQAKIRDLQQAALTKRAAQ 536 A + + E ++ I E +Q A + +I+D+ A+ Sbjct 567 GTAILYGDRITESMKKAIGETERRRAKQIAHNEAHGITPRGVVKRIKDIIDGVYNVDDAR 626 Query 537 AAQRENQ 543 A + Q Sbjct 627 AELKAAQ 633 >sp|P47943|IF4A_SCHPO ATP-dependent RNA helicase eIF4A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=tif1 PE=1 SV=2 Length=392 Score = 93.3 bits (230), Expect = 5e-19, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 46/118 (39%), Gaps = 14/118 (12%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K E L + + + +IF TR+ L L ++ S Sbjct 241 KEEWKLDTLCDLYETVTVTQAVIFCNTRRKVDWLTEQLTERD--------------FTVS 286 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 S M Q + ++ +F+ G+ +L+ T + G+D+ ++V+ Y L N + + Sbjct 287 SMHGDMDQAQRDTLMHEFRTGSSRILITTDLLARGIDVQQVSLVINYDLPANRENYIH 344 Score = 48.3 bits (113), Expect = 2e-04, Method: Composition-based stats. Identities = 28/165 (17%), Positives = 57/165 (35%), Gaps = 11/165 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q IMP L ++++ +G GKT + V ++ ++ + ++L L Q + Sbjct 46 QQRAIMPILGERDVLAQAQSGTGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQK 105 Query 66 EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 + D G R L +++ T + + + Sbjct 106 VVVALGDLMNVECHACIGGTLVRDDMAALQAGVHVVVGTPGRVHDMIQRRA----LPTDA 161 Query 125 FSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS 169 + V+DE D + + + Q P QV+ L+A+ Sbjct 162 VQMFVLDEA-----DEMLSRGFKDQIYDIFQLLPPTAQVVLLSAT 201 >sp|A3GFI4|IF4A_PICST ATP-dependent RNA helicase eIF4A OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) OX=322104 GN=TIF1 PE=3 SV=1 Length=397 Score = 93.3 bits (230), Expect = 5e-19, Method: Composition-based stats. Identities = 42/305 (14%), Positives = 101/305 (33%), Gaps = 30/305 (10%) Query 165 GLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYN--LCH 222 G TA+ ++D L + +N + + Sbjct 72 GKTATFTISALQRIDENEKSTQALILAPTRELALQIKNVITSIGLYLNVTVHASIGGTSM 131 Query 223 RRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYAL 282 + + F ++ ++ +M E R F T+ + ++ ++ +G +EQ Sbjct 132 QDDIEAFRSGVQVVVGTPGRVFDMIE-RRYFKTEKVKMFIMDEADEMLSSGFKEQIYNIF 190 Query 283 HLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLA 342 L +++ D L F + + + F + Sbjct 191 RLLPETTQVVLLSATMPQDVLEVTTKFMNNPVRILVKKDELTLEGIKQFYINVELEDY-- 248 Query 343 THGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL 402 K + L + + S + + +IF TR L L+ + Sbjct 249 -------KFDCLCDL----YDSISVTQAVIFCNTRSKVEFLTTKLKAEN----------- 286 Query 403 LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE 462 S+ + Q ++ ++++F+ G+ +L+AT + G+D+ ++V+ Y L +N+ Sbjct 287 ---FTVSAIHADLPQAERDTIMKEFRSGSSRILIATDLLARGIDVQQVSLVINYDLPSNK 343 Query 463 ISMVQ 467 + + Sbjct 344 ENYIH 348 Score = 54.4 bits (129), Expect = 2e-06, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 44/129 (34%), Gaps = 6/129 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q I+P EG++++ +G GKT +R E + ++L L Q Sbjct 50 QQRAILPITEGRDVLAQAQSGTGKTATFTISALQRIDENEKSTQALILAPTRELALQIKN 109 Query 66 EFRRM-LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 + L TV G + +++ T + + E + + Sbjct 110 VITSIGLYLNVTVHASIGGTSMQDDIEAFRSGVQVVVGTPGRVFDMI----ERRYFKTEK 165 Query 125 FSLIVVDEC 133 + ++DE Sbjct 166 VKMFIMDEA 174 >sp|A7EAY2|MAK5_SCLS1 ATP-dependent RNA helicase mak5 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 GN=mak5 PE=3 SV=1 Length=780 Score = 95.2 bits (235), Expect = 6e-19, Method: Composition-based stats. Identities = 35/122 (29%), Positives = 49/122 (40%), Gaps = 17/122 (14%) Query 366 NSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQ 425 + R +IFT + S L LQ S + M Q+ + I+ Sbjct 502 PNQRTLIFTNSIHSVRRLTPMLQTLNIPAH--------------SLHSQMIQKARMRSIE 547 Query 426 KF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFV 482 KF + T ++LVAT VA GLDI +V+ Y L V GR ARA S + + Sbjct 548 KFSRTNNTGSVLVATDVAARGLDIGGVQLVIHYHLPRTADMYVHRSGRTARAAASGSSIL 607 Query 483 AT 484 Sbjct 608 LC 609 Score = 50.6 bits (119), Expect = 4e-05, Method: Composition-based stats. Identities = 30/146 (21%), Positives = 52/146 (36%), Gaps = 20/146 (14%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAA--------YVAKRHLETVDGAK------VVV 52 Q E I L G +++ TG+GKT A L+ + K ++ Sbjct 240 QSEAIPEVLAGHDVVGKASTGSGKTL-AFGIPIVEKWLEVYGELDEDELKKSTRPPTALI 298 Query 53 LVNRVHLVTQ---HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQM 109 L L Q H + + V ++G + + L++ D++I T L Sbjct 299 LSPTRELAHQLTEHITTLCKGMPTSPYVAAVTGGLSVQKQQRQLSKA-DIIIGTPGRLWE 357 Query 110 ALTSPEEEEHVELTVFSLIVVDECHH 135 ++S E L +V+DE Sbjct 358 VISSSNELS-AGLKQVRFLVIDEADR 382 >sp|A5DB98|IF4A_PICGU ATP-dependent RNA helicase eIF4A OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=TIF1 PE=3 SV=1 Length=396 Score = 93.3 bits (230), Expect = 6e-19, Method: Composition-based stats. Identities = 44/305 (14%), Positives = 99/305 (32%), Gaps = 30/305 (10%) Query 165 GLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYN--LCH 222 G TA+ ++D + L + QN + + Sbjct 71 GKTATFTISALQRIDENLKATQALILAPTRELALQIQNVITHIGLYLNVTVHASIGGTSM 130 Query 223 RRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYAL 282 + + F ++ ++ +M E R F T + ++ ++ +G +EQ Sbjct 131 KDDIEAFKSGVQIVVGTPGRVFDMIE-RRFFRTDKVKMFIMDEADEMLSSGFKEQIYNIF 189 Query 283 HLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLA 342 L +++ D L F + + + F + Sbjct 190 RLLPETTQVVLLSATMPQDVLEVTTKFMNNPVRILVKKDELTLEGIKQFYINVEQEDF-- 247 Query 343 THGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL 402 K + L + + S + + +IF TR L L+ + Sbjct 248 -------KFDCLCDL----YDSISVTQAVIFCNTRSKVEFLTTKLKAEN----------- 285 Query 403 LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE 462 S+ + Q D+ ++ +F+ G+ +L+AT + G+D+ ++V+ Y L N+ Sbjct 286 ---FTVSAIHADLPQSDRDTIMNEFRSGSSRILIATDLLARGIDVQQVSLVINYDLPANK 342 Query 463 ISMVQ 467 + + Sbjct 343 ENYIH 347 Score = 53.3 bits (126), Expect = 5e-06, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 43/129 (33%), Gaps = 6/129 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q I+P EG++++ +G GKT +R E + + ++L L Q Sbjct 49 QQRAILPITEGRDVLAQAQSGTGKTATFTISALQRIDENLKATQALILAPTRELALQIQN 108 Query 66 EFRRM-LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 + L TV G + +++ T + + E Sbjct 109 VITHIGLYLNVTVHASIGGTSMKDDIEAFKSGVQIVVGTPGRVFDMI----ERRFFRTDK 164 Query 125 FSLIVVDEC 133 + ++DE Sbjct 165 VKMFIMDEA 173 >sp|A2QAX7|DRS1_ASPNC ATP-dependent RNA helicase drs1 OS=Aspergillus niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) OX=425011 GN=drs1 PE=3 SV=1 Length=824 Score = 95.2 bits (235), Expect = 6e-19, Method: Composition-based stats. Identities = 40/185 (22%), Positives = 76/185 (41%), Gaps = 23/185 (12%) Query 343 THGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL 402 G E+ +L L + + ++ R I+F R ++ AH + + Sbjct 534 RPGREDKRLGYLLYLCKEIYTG----RVIVFFRQKKEAHRVRIIFG-------------- 575 Query 403 LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE 462 L+G + M+Q ++ ++ F++G L+AT +A GLDI V+ Y + Sbjct 576 LLGLKAAELHGSMSQ---EQSVENFREGKAAFLLATDLASRGLDIKGVETVINYEAPQSH 632 Query 463 ISMVQARGR-ARADQSVYA-FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA 520 + GR ARA +S A +A E R++ + + + A ++ + A Sbjct 633 EIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAAVKAGKSQGAKIASRVIEPAVADSWAA 692 Query 521 KIRDL 525 K +L Sbjct 693 KAEEL 697 Score = 52.5 bits (124), Expect = 1e-05, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 48/136 (35%), Gaps = 12/136 (9%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHL----ETVDGAKVVVLVNRVHLVTQ 62 Q + I AL GK+I+ TG+GKT A L V ++V +L+ L Q Sbjct 336 QRKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLLFRPRKVPTSRVAILMPTRELAVQ 395 Query 63 HGEE---FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 D + L G R L + D++I T + + Sbjct 396 CYNVATKLATYTDITF--CQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNS---AS 450 Query 120 VELTVFSLIVVDECHH 135 + ++V+DE Sbjct 451 FTVDTLEILVLDEADR 466 >sp|A4R5B8|DBP10_PYRO7 ATP-dependent RNA helicase DBP10 OS=Pyricularia oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 GN=DBP10 PE=3 SV=1 Length=914 Score = 95.2 bits (235), Expect = 6e-19, Method: Composition-based stats. Identities = 38/159 (24%), Positives = 56/159 (35%), Gaps = 25/159 (16%) Query 329 ALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQ 388 F + K+E + GP+ P + IIFT T+ L L Sbjct 337 EGFKEDKDEGSKKRKRGPDRPNAK----------EKPTEHSTIIFTATKFHVEYLTSILV 386 Query 389 QQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIP 448 Q G S + Q ++ ++ F+ G N+LV T VA G+DIP Sbjct 387 QA--------------GYAVSHAYGALDQTARKIQVEDFRRGKTNILVVTDVAARGIDIP 432 Query 449 HCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEG 486 V+ Y V GR ARA Q +++ Sbjct 433 VLANVINYDFCDQPKVFVHRVGRTARAGQKGWSYSLVSD 471 Score = 50.2 bits (118), Expect = 6e-05, Method: Composition-based stats. Identities = 25/114 (22%), Positives = 40/114 (35%), Gaps = 8/114 (7%) Query 26 TGAGKTRAAAYVAKRHLETVD---GAKVVVLVNRVHLVTQHGEEFRRMLDGRWTVT-TLS 81 TG+GKT A L GA+ +++ L Q + + G T L Sbjct 136 TGSGKTAAFVIPMIERLRAHSARVGARALIMSPSRELALQTLKVVKEFGKGTDLKTVLLV 195 Query 82 GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH 135 G FG + D++I T + E ++L+ +V DE Sbjct 196 GGDSLEDQFGFMTTNPDIIIATPGRFLH----LKVEMSLDLSSIKYVVFDEADR 245 >sp|P87206|IF4A_CANAL ATP-dependent RNA helicase eIF4A OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=TIF1 PE=3 SV=1 Length=397 Score = 92.9 bits (229), Expect = 7e-19, Method: Composition-based stats. Identities = 33/219 (15%), Positives = 77/219 (35%), Gaps = 27/219 (12%) Query 249 LSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQD 308 R F T + ++ ++ +G +EQ L +++ D L Sbjct 157 ERRYFKTDKVKMFILDEADEMLSSGFKEQIYNIFRLLPETTQIVLLSATMPQDVLEVTTK 216 Query 309 FYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSP 368 F + + + F + K + L + + S + Sbjct 217 FMNNPVRILVKKDELTLEGIKQFYINVELEDY---------KFDCLCDL----YDSISVT 263 Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 + +IF TR L L++Q S+ + Q ++ ++++F+ Sbjct 264 QAVIFCNTRSKVEFLTNKLREQH--------------FTVSAIHADLPQAERDTIMKEFR 309 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 G+ +L++T + G+D+ ++V+ Y L N+ + + Sbjct 310 SGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIH 348 Score = 53.6 bits (127), Expect = 3e-06, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 44/129 (34%), Gaps = 6/129 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q I+P EG++++ +G GKT +R E + ++L L Q Sbjct 50 QQRAILPITEGRDVLAQAQSGTGKTATFTISALQRINENEKATQALILAPTRELALQIKN 109 Query 66 EFRRM-LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 + L + TV G +++ T + + E + + Sbjct 110 VITAIGLYLKVTVHASIGGTSMSDDIEAFRSGVQIVVGTPGRVLDMI----ERRYFKTDK 165 Query 125 FSLIVVDEC 133 + ++DE Sbjct 166 VKMFILDEA 174 >sp|A7TK55|IF4A_VANPO ATP-dependent RNA helicase eIF4A OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 GN=TIF1 PE=3 SV=1 Length=396 Score = 92.9 bits (229), Expect = 7e-19, Method: Composition-based stats. Identities = 22/116 (19%), Positives = 52/116 (45%), Gaps = 14/116 (12%) Query 352 EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ 411 + L + S + + +IF TR+ L L + SS Sbjct 246 QYKFDCLSDLYDSISVTQAVIFCNTRRKVEELTQKLTESN--------------FTVSSI 291 Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 + + Q+++ ++++F+ G+ +L++T + G+D+ ++V+ Y L TN+ + + Sbjct 292 YSDLPQQERDVIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPTNKENYIH 347 Score = 49.8 bits (117), Expect = 6e-05, Method: Composition-based stats. Identities = 19/131 (15%), Positives = 41/131 (31%), Gaps = 11/131 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT---RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ- 62 Q I+P +E +++ +G GKT AA +R ++ + ++L L Q Sbjct 50 QQRAILPIVEEHDVLAQAQSGTGKTGTFSIAAL--QRIDSSIKAPQALILAPTRELALQI 107 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 V G + +++ T + + + Sbjct 108 QKVVIALAFHMDVKVHACIGGTSF-VEDTEGLKDAQIVVGTPGRVSDNIQ---RHRF-KT 162 Query 123 TVFSLIVVDEC 133 + ++DE Sbjct 163 DNIKMFILDEA 173 >sp|A5DVM3|IF4A_LODEL ATP-dependent RNA helicase eIF4A OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) OX=379508 GN=TIF1 PE=3 SV=1 Length=397 Score = 92.9 bits (229), Expect = 8e-19, Method: Composition-based stats. Identities = 44/305 (14%), Positives = 101/305 (33%), Gaps = 30/305 (10%) Query 165 GLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYN--LCH 222 G TA+ ++D L + +N + + Sbjct 72 GKTATFTISALQRIDENEKSTQALILAPTRELALQIKNVITSIGLYLNVTVHASIGGTSM 131 Query 223 RRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYAL 282 + F ++ ++ +M E R F T + ++ ++ +G +EQ Sbjct 132 SDDIEAFKSGVQIVVGTPGRVFDMIE-RRYFRTDKVKMFILDEADEMLSSGFKEQIYNIF 190 Query 283 HLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLA 342 L +++ D L F +IL + L + K ++ Sbjct 191 RLLPETTQVVLLSATMPQDVLEVTTKFM----NNPVRILVKKDELT--LEGIKQYFINVE 244 Query 343 THGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL 402 L + S + + +IF TR L L++Q+ Sbjct 245 VED-------YKFDCLVDLYDSISVTQAVIFCNTRSKVEFLTNKLREQK----------- 286 Query 403 LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE 462 S+ + Q ++ ++++F+ G+ +L++T + G+D+ ++V+ Y L N+ Sbjct 287 ---FTVSAIHADLPQGERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANK 343 Query 463 ISMVQ 467 + + Sbjct 344 ENYIH 348 Score = 54.4 bits (129), Expect = 2e-06, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 42/129 (33%), Gaps = 6/129 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q I+P EG++++ +G GKT +R E + ++L L Q Sbjct 50 QQRAILPITEGRDVLAQAQSGTGKTATFTISALQRIDENEKSTQALILAPTRELALQIKN 109 Query 66 EFRRM-LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 + L TV G +++ T + + E + Sbjct 110 VITSIGLYLNVTVHASIGGTSMSDDIEAFKSGVQIVVGTPGRVFDMI----ERRYFRTDK 165 Query 125 FSLIVVDEC 133 + ++DE Sbjct 166 VKMFILDEA 174 >sp|Q6BV58|MAK5_DEBHA ATP-dependent RNA helicase MAK5 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=MAK5 PE=3 SV=1 Length=790 Score = 94.9 bits (234), Expect = 8e-19, Method: Composition-based stats. Identities = 43/282 (15%), Positives = 93/282 (33%), Gaps = 52/282 (18%) Query 292 LIHDTVRAVDALAALQDFYHREHVTKT--QILCAERRLLALFDDRKNELAHLATHGPENP 349 L+ + D L + L +L L +D+ T NP Sbjct 403 LVFSATFSRDLFGKLDKHLKSNKNKEEMGSSLIDNDEILQLLNDKLKFKDSKPTLVDANP 462 Query 350 KLEMLEKILQRQFSSSNSPR--------------GIIFTRTRQSAHSLLLWLQQQQGLQT 395 K + +I + + R ++F + S L +L + Sbjct 463 KEMVAGQITEALVECGPTERDLYLYYFLLLYPGSTLVFANSIDSVKRLAPFLNNLKVPTF 522 Query 396 VDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD----GTLNLLVATSVAEEGLDIPHCN 451 S + M Q+ + +++F++ + +L+A+ VA GLDIP+ + Sbjct 523 --------------SIHSSMIQKQRLRTLERFKEASSKNSTAVLIASDVAARGLDIPNID 568 Query 452 VVVRYGLLTNEISMVQARGR-ARADQSVYAFVAT-----------------EGSRELKRE 493 V Y L + + GR RA + + + +++ R Sbjct 569 HVAHYHLPRSADVYIHRSGRTGRAGKEGVSIMFCSPQESSGPLRKLRKLVANNTKKRTRL 628 Query 494 LINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAA 535 ++ ++ L + Q + +K+ D ++++ + R Sbjct 629 NVHNDVKLLPLEMDLVSQIKPRVTLASKLADAERSSSSTRKE 670 Score = 50.6 bits (119), Expect = 5e-05, Method: Composition-based stats. Identities = 29/164 (18%), Positives = 64/164 (39%), Gaps = 20/164 (12%) Query 14 ALEGKNIIIWLPTGAGKTRAA-AYVAKRHLETV----DGAKV------VVLVNRVHLVTQ 62 A+EGK++I TG+GKT A + +RHL+ + KV ++ L Q Sbjct 233 AIEGKDVIGKAITGSGKTLAYGIPILERHLQKMAKANQSKKVINPPTGIIFAPTRELAHQ 292 Query 63 ---HGEEFRRMLDGRWT-VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEE 118 H + + +++G + + L+ +++ T L + Sbjct 293 VVDHLNRIAKFTPLSQHGIVSITGGLSIQKQERLLSHGPGIVVATPGRFLE-LLQKDMAL 351 Query 119 HVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQ 162 L+ ++V+DE +D + +++++ + P+ Sbjct 352 VQRLSCTDIVVLDEADRLLQDGHF----DEFVKILELFGKHRPR 391 >sp|A5E726|DBP6_LODEL ATP-dependent RNA helicase DBP6 OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) OX=379508 GN=DBP6 PE=3 SV=1 Length=663 Score = 94.5 bits (233), Expect = 9e-19, Method: Composition-based stats. Identities = 63/384 (16%), Positives = 137/384 (36%), Gaps = 26/384 (7%) Query 156 RAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPC 215 + + +P+V + P +++ + L L NL+ + + + + + + Sbjct 296 KDRVVPRVRAIVLVPTKPLINQVRATM-LQLALGTNLNIVSLKNDISIREESERLIELVP 354 Query 216 KQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQ 275 R + L + ++ + Q + Q ++ + + Sbjct 355 DVVISTPGRLVEHLAMDSISLSSLRYLVVDEADRLLNQSFQNWSQILISKIHLQQVYDV- 413 Query 276 EQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRK 335 V++L ++++ + + + +L + ++ R + LF Sbjct 414 -ANVWSLKVQKFIFSATLTTDAGKLASLDFHNPRLLIVNDSQ-------RLVNELFSVPA 465 Query 336 NELAHLATHGPENPKLEMLEKILQRQF-SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQ 394 + G L+ L IL + + ++FT++ +S+ L LQ Sbjct 466 MLSEYKLNFGVAKSSLKPL--ILAKFLIAQEKLSDVLVFTKSNESSIRLCTLLQAI---- 519 Query 395 TVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV 454 I Q + G + + + T + ++++ F +N+LVAT + GLD+ VV Sbjct 520 FDRICLQEKVKVGFMNLTNNRT-SLRSKILKDFTSQKINILVATDLIARGLDVTSIKDVV 578 Query 455 RYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKREL-------INEALETLMEQA 506 Y LL + V GR ARA+Q+ A+ G E K N ++ + Sbjct 579 NYDLLNSSREYVHRVGRTARANQAGNAYNLVFGKGEEKWFKTISSEVSRNNDVKDVEVNL 638 Query 507 VAAVQKMDQAEYQAKIRDLQQAAL 530 + D+ YQ ++ LQ Sbjct 639 KQLISDEDEKLYQEALQSLQDQVR 662 Score = 54.8 bits (130), Expect = 2e-06, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 46/120 (38%), Gaps = 8/120 (7%) Query 20 IIIWLPTGAGKTRAAAYVAKRHLET--VDGAKVVVLVNRVHLVTQ-HGEEFRRMLDGRWT 76 +++ TG+GKT A + L+ V + +VLV L+ Q + L Sbjct 273 VLVNASTGSGKTLAYSIPIIESLKDRVVPRVRAIVLVPTKPLINQVRATMLQLALGTNLN 332 Query 77 VTTLSGDMGPRAGFGHLARCH-DLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH 135 + +L D+ R L D++I T L L + L+ +VVDE Sbjct 333 IVSLKNDISIREESERLIELVPDVVISTPGRLVEHLAMDS----ISLSSLRYLVVDEADR 388 >sp|Q6CH90|SUB2_YARLI ATP-dependent RNA helicase SUB2 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=SUB2 PE=3 SV=2 Length=441 Score = 92.9 bits (229), Expect = 9e-19, Method: Composition-based stats. Identities = 50/336 (15%), Positives = 105/336 (31%), Gaps = 37/336 (11%) Query 200 PQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYE 259 P C + H+++ Q + R D+ + + EL + T + Sbjct 123 PGECSVVVLCHTRELAYQIMNEYARFSKYLPDVKTAVFYGGSPIQKDIELIQNKETSPHV 182 Query 260 QQV--VKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDF-----YHR 312 +L L+ V + + L D R V + + Sbjct 183 IVATPGRLHALVRDKHLRLGNVKTFVIDECDKVLDQIDMRRDVQEIFRVTPRQKQVMMFS 242 Query 313 EHVTKTQILCAERRLLALFDDRKNELAHLATHG--------PENPKLEMLEKILQRQFSS 364 +++ ++ + + + ++ L HG E K L +L Sbjct 243 ATLSQEIRPICKKFMSSPLEILVDDEGKLTLHGLQQYYVDVEEKSKNRKLGDLLDNL--- 299 Query 365 SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI 424 + IIF ++ A+ L L G ++ + + Q ++ Sbjct 300 -EFNQVIIFVKSTSRANGLSQVLNAN--------------GFPCTAVHSGIPQEERIARY 344 Query 425 QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARA-DQSVYAFVA 483 ++F++ + V+T V G+DI N+ + Y L + GRA A Sbjct 345 KEFKEFKKRICVSTDVFGRGIDIERINLAINYDLPAEADQYLHRVGRAGRFGTKGLAISF 404 Query 484 TEGSRELKRELINEALETLM-EQAVAAVQKMDQAEY 518 + +E++ + E A + +D + Y Sbjct 405 VSTPED--KEVLAKIQERFEVNIAPYPAEGVDPSTY 438 Score = 51.7 bits (122), Expect = 1e-05, Method: Composition-based stats. Identities = 31/135 (23%), Positives = 49/135 (36%), Gaps = 14/135 (10%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG-AKVVVLVNRVHLVTQ--- 62 Q I ++ G +++ G GKT + LE V G VVVL + L Q Sbjct 84 QQVCIPQSILGTDVLCQAKAGVGKTAVFVLSTLQQLEPVPGECSVVVLCHTRELAYQIMN 143 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHD----LLICTAELLQMALTSPEEEE 118 F + L T G P L + + +++ T L + ++ Sbjct 144 EYARFSKYLPDVKTAVFYGG--SPIQKDIELIQNKETSPHVIVATPGRLH----ALVRDK 197 Query 119 HVELTVFSLIVVDEC 133 H+ L V+DEC Sbjct 198 HLRLGNVKTFVIDEC 212 >sp|Q7XJN0|RH17_ARATH DEAD-box ATP-dependent RNA helicase 17 OS=Arabidopsis thaliana OX=3702 GN=RH17 PE=2 SV=1 Length=609 Score = 94.1 bits (232), Expect = 1e-18, Method: Composition-based stats. Identities = 46/259 (18%), Positives = 86/259 (33%), Gaps = 27/259 (10%) Query 252 KFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVD--ALAALQDF 309 + G +Q++KL + +E + +++ N L + D L+ Sbjct 194 ELGYGKEIEQIIKLLGSGQNEQGEEDDIVPKGIQKQNLLLSATLNDKVNDLAKLSLDDPV 253 Query 310 YHREHVTKTQILCAERRLLALFDDRKNELAHLATH-GPENP------------------- 349 TK Q + A D ++ + H+ P + Sbjct 254 MIGLDNTKLQQNLSIESPAAPDSDAEDMVIHVNKSANPLSEDYGIPSQLVQRYLRVPCGA 313 Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIR----AQLLIG 405 +L L +L+ F S + ++F TR + L + Q + +L + Sbjct 314 RLVALLSVLKNLFEREASQKVVVFFSTRDAVDFHYSLLSEFQWPPNSETEEEGTKELFLK 373 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465 M Q D++ F+ +L++T VA GLD P +++Y Sbjct 374 CKTFRLHGSMEQEDRRSAFGTFKTEKQAVLLSTDVAARGLDFPKVRCIIQYDCPGEATEY 433 Query 466 VQARGR-ARADQSVYAFVA 483 V GR AR + A + Sbjct 434 VHRVGRTARIGEKGEALLF 452 Score = 52.9 bits (125), Expect = 9e-06, Method: Composition-based stats. Identities = 30/137 (22%), Positives = 46/137 (34%), Gaps = 14/137 (10%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYV-AKRHLETVDGA-------KVVVLVNRVH 58 Q + I L G+++++ PTG GKT A HL+ +V+V Sbjct 57 QAQAIPVILSGRDVLVNAPTGTGKT-IAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRE 115 Query 59 LVTQHGEEFRRMLDG--RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE 116 L Q E ++L + G L + +LI T L L + Sbjct 116 LCLQVYETLEKLLHRFHWIVPGYVMGGEKKAKEKARLRKGISILIATPGRLLDHLKNTAS 175 Query 117 EEHVELTVFSLIVVDEC 133 H L + DE Sbjct 176 FVHKNLRWV---IFDEA 189 >sp|Q9ESV0|DDX24_MOUSE ATP-dependent RNA helicase DDX24 OS=Mus musculus OX=10090 GN=Ddx24 PE=1 SV=2 Length=857 Score = 94.5 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 62/396 (16%), Positives = 131/396 (33%), Gaps = 32/396 (8%) Query 154 LQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQ 213 + + P +LGL +P A ++ I+ V + ++T ++ + Q + ++ Sbjct 379 IYKVHPRRPLLGLVLTPTRELAIQVRQHIDAVAKF-TGINTAILVGGMSTQKQQRMLNRH 437 Query 214 PCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAG 273 P + R + + L + + + + + + + ++ +L E + Sbjct 438 P-EIVIATPGRLWELVKEKHPHLSNLRQLRCLVIDEADRMVEKGHFAELSQLLEMLNDSQ 496 Query 274 LQEQR---VYALHLRRYNDA---LLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRL 327 R V++ L + A +L V+ +D L + + + R Sbjct 497 YNPSRQTLVFSATLTLVHQAPARILHKKHVKKMDKTDKLDLLMQKVGMRGKPKVIDLTRN 556 Query 328 LALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWL 387 + L H + K L L + R ++F + L L Sbjct 557 ----EGTVETLTETKIHCETDEKDLYLYYFLMQY-----PGRSLVFANSISCIKRLSGLL 607 Query 388 QQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDI 447 + + M Q+ + +++F +L+AT VA GLDI Sbjct 608 KVLDVMPLTLHAC--------------MHQKQRLRNLEQFARLQDCVLLATDVAARGLDI 653 Query 448 PHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQA 506 P V+ Y + + GR ARA + + + + I + L+ + Sbjct 654 PKVQHVIHYQVPRTSEIYIHRSGRTARAASEGLSLMLIGPEDVINFKKIYKTLQKDEDIP 713 Query 507 VAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQREN 542 + VQ + +IR +Q + A N Sbjct 714 LFPVQSKYMDVVKERIRLARQIEKAEYRNFQACLHN 749 Score = 43.6 bits (101), Expect = 0.007, Method: Composition-based stats. Identities = 23/122 (19%), Positives = 39/122 (32%), Gaps = 6/122 (5%) Query 51 VVLVNRVHL---VTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELL 107 +VL L V QH + + L G M + L R +++I T L Sbjct 391 LVLTPTRELAIQVRQHIDAVAKFTGI--NTAILVGGMSTQKQQRMLNRHPEIVIATPGRL 448 Query 108 QMALTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLT 167 + L +V+DE + + + L + P Q L + Sbjct 449 WELVKEKHPHLS-NLRQLRCLVIDEADRMVEKGHFAELSQLLEMLNDSQYNPSRQTLVFS 507 Query 168 AS 169 A+ Sbjct 508 AT 509 >sp|Q9FLB0|RH18_ARATH DEAD-box ATP-dependent RNA helicase 18 OS=Arabidopsis thaliana OX=3702 GN=RH18 PE=2 SV=1 Length=593 Score = 94.1 bits (232), Expect = 1e-18, Method: Composition-based stats. Identities = 55/367 (15%), Positives = 117/367 (32%), Gaps = 47/367 (13%) Query 152 LKLQRAQPLP-QVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEH 210 + P P QV+G+ SP ++++ + AN+++ ++ + ++ Sbjct 79 RRSTSFPPKPHQVMGVIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKII 138 Query 211 SQQPCKQYNLCHRRSQDPFGDLLKKLMD-------QIHDHLEMPELSRKFGTQMYEQQVV 263 ++ C R D + +++D + + + E+ + ++ Sbjct 139 EEEGCNVLIGTPGRLSDIMERM--EILDFRNLEILILDEADRLLEMGFQRQVNYIISRLP 196 Query 264 KLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCA 323 K + Q + V L + + + ++ + Sbjct 197 KQRRTGLFSATQTEGVEELAKAGLRNPVRVEVRAKSK----------------------S 234 Query 324 ERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSL 383 E + L + K L +L + ++ + I+F T S Sbjct 235 ESSQQLTNSKTPSGLHLEYMECEADKKSSQLVDLLIK----NSDKKLIVFFMTCASVDYW 290 Query 384 LLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEE 443 L L + L+++ + M Q + + + F + L+ T VA Sbjct 291 GLVLSKIPALKSISL----------IPIHGDMKQNARDKALASFTKASSGALLCTDVAAR 340 Query 444 GLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETL 502 GLDIP + VV+Y + GR AR + A V E E + L Sbjct 341 GLDIPGIDYVVQYDPPQDPNMFNHRAGRTARLGRQGRAIVFLLPKEEAYVEFMRIRRVPL 400 Query 503 MEQAVAA 509 E+ + Sbjct 401 EERKCSE 407 Score = 42.1 bits (97), Expect = 0.017, Method: Composition-based stats. Identities = 48/363 (13%), Positives = 100/363 (28%), Gaps = 27/363 (7%) Query 26 TGAGKTRAAAYVAKRHLETV-----DGAKV--VVLVNRVHLVTQHGEEFRRM---LDGRW 75 TG+GKT A L +V V++ L TQ + L Sbjct 62 TGSGKTLAFVVPLVEILRRSTSFPPKPHQVMGVIISPTRELSTQIYNVAQPFVSTLANVN 121 Query 76 TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH 135 +V + G ++LI T L + E E ++ ++++DE Sbjct 122 SVLLVGGREVKADMKIIEEEGCNVLIGTPGRLSDIM---ERMEILDFRNLEILILDEADR 178 Query 136 THKDTVYNVIMSQYLELKLQRAQPLPQVLGL-TASPGTGGASKLDGAINHVLQLCANLDT 194 + + + P + GL +A+ G + + +++ + Sbjct 179 LLEMGFQRQV------NYIISRLPKQRRTGLFSATQTEGVEELAKAGLRNPVRVE--VRA 230 Query 195 WCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKF- 253 + S + + DLL K D+ M S + Sbjct 231 KSKSESSQQLTNSKTPSGLHLEYMECEADKKSSQLVDLLIKNSDKKLIVFFMTCASVDYW 290 Query 254 GTQMYEQQVVKLSEAAALAG----LQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDF 309 G + + +K + G + A + + ALL D + + Sbjct 291 GLVLSKIPALKSISLIPIHGDMKQNARDKALASFTKASSGALLCTDVAARGLDIPGIDYV 350 Query 310 YHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPR 369 + + A + + L + + ++ + S Sbjct 351 VQYDPPQDPNMFNHRAGRTARLGRQGRAIVFLLPKEEAYVEFMRIRRVPLEERKCSEDAS 410 Query 370 GII 372 +I Sbjct 411 DVI 413 >sp|A2QAB5|ROK1_ASPNC ATP-dependent RNA helicase rok1 OS=Aspergillus niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) OX=425011 GN=rok1 PE=3 SV=2 Length=729 Score = 94.1 bits (232), Expect = 1e-18, Method: Composition-based stats. Identities = 52/253 (21%), Positives = 93/253 (37%), Gaps = 18/253 (7%) Query 232 LLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDAL 291 L+ L L L R + + L L + L +L Sbjct 364 LVNALSANRTKPLATLPLVRNVVLDEADVLLDPLFRDQTLDIWRSCTHPEL-----RASL 418 Query 292 LIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH-LATHGPENPK 350 V+ LA ++ +++T+ R ++ L D + H L E K Sbjct 419 WSATMGSNVEDLAKSTIKERKDTLSETKSYPLLRLVVGLKDSAIPNIKHKLVYAATEQGK 478 Query 351 LEMLEKILQRQFSSSNSPRG----IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA 406 L L ++L +SS R +IFT+T A +L L+ DI + + Sbjct 479 LLGLRQLLHPAAASSTDIRLRPPFLIFTQTIPRAVALHSELR-------YDIPPEAGGSS 531 Query 407 GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV 466 + + ++ + E++++F+ G + +LV T + G+D N VV Y + + V Sbjct 532 RIAVLHSELSDGQRSEIMKQFRKGEIWILVTTDLLARGVDFRGINGVVNYDIPNSAAVYV 591 Query 467 QARGR-ARADQSV 478 GR RA + Sbjct 592 HRVGRTGRAGREG 604 Score = 45.2 bits (105), Expect = 0.002, Method: Composition-based stats. Identities = 28/154 (18%), Positives = 50/154 (32%), Gaps = 40/154 (26%) Query 20 IIIWLPTGAGKTR-----AAAYVAKRHLETVDGAKV--VVLVNRVHLVTQHGEEFRRML- 71 +++ PTG+GKT + + H E + + VV+ L +Q E R++ Sbjct 237 LLVVAPTGSGKTLSFMIPVINKIVRHHHEKPEERGILSVVIAPTKELASQIVNEGRKLAL 296 Query 72 -------------------DGRWTVTTLSGD-------------MGPRAGFGHLARCHDL 99 D + L D + D+ Sbjct 297 GTGVKITLMKKGMRVVERDDEDDSKDVLDEDDSESLGSEDDEKATAKNSKGKAPVTKSDI 356 Query 100 LICTAELLQMALTSPEEEEHVELTVFSLIVVDEC 133 L+ T LL AL++ + L + +V+DE Sbjct 357 LVTTPLLLVNALSANRTKPLATLPLVRNVVLDEA 390 >sp|A5DPU0|MAK5_PICGU ATP-dependent RNA helicase MAK5 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=MAK5 PE=3 SV=1 Length=754 Score = 94.1 bits (232), Expect = 1e-18, Method: Composition-based stats. Identities = 41/213 (19%), Positives = 71/213 (33%), Gaps = 36/213 (17%) Query 292 LIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKL 351 L+ + D L + R K +L+L + + NPK Sbjct 385 LVFSATFSRDLFGKLSNNKPRN---KESSFIENDEILSLLNTKLQFRDRTPAVIDANPKE 441 Query 352 EMLEKILQRQFSSSNSPR--------------GIIFTRTRQSAHSLLLWLQQQQGLQTVD 397 + K+ + S R ++F S L+ +L Sbjct 442 IVSGKVTEALVECGPSERDLYLYYFLLMYPGSTLVFANAIDSVKRLVPFLTNLNIPTF-- 499 Query 398 IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD-GTLN---LLVATSVAEEGLDIPHCNVV 453 S + M Q+ + +++F+ G N +L+A+ VA GLDIP+ + V Sbjct 500 ------------SIHSSMIQKQRLRALERFKAAGEKNQTAVLIASDVAARGLDIPNIDHV 547 Query 454 VRYGLLTNEISMVQARGR-ARADQSVYAFVATE 485 Y L + V GR ARA + + + Sbjct 548 AHYHLPRSADVYVHRSGRTARAGKEGVSVMFCS 580 Score = 50.2 bits (118), Expect = 6e-05, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 67/182 (37%), Gaps = 21/182 (12%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTR---AAAY-VAKRHLET-----VDGAKVVVLVNRV 57 Q + I AL+GK++I TG+GKT LE+ ++ Sbjct 211 QRKAIPLALQGKDVIGKATTGSGKTLAYGIPILERCLAQLESKTNTIKPPTAMIF-APTR 269 Query 58 HLVTQ---HGEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTS 113 L Q H + + + + +++G + + L+ +L+ T L Sbjct 270 ELAHQVVDHMNKIAKFSPLAQNGIVSITGGLSIQKQERLLSHGPSILVATPGRCLE-LME 328 Query 114 PEEEEHVELTVFSLIVVDECHHTHKDT---VYNVIMSQYLELKLQRAQPLPQV---LGLT 167 + + + +IV+DE +D + I+ + + ++ Q + + L + Sbjct 329 KSVDLVNRMALTDMIVLDEADRLLQDGHFEEFEKILDMLNKHRPKKTQGVSRRWQTLVFS 388 Query 168 AS 169 A+ Sbjct 389 AT 390 >sp|P0CQ96|SUB2_CRYNJ ATP-dependent RNA helicase SUB2 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=SUB2 PE=3 SV=1 Length=442 Score = 92.6 bits (228), Expect = 1e-18, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 60/182 (33%), Gaps = 21/182 (12%) Query 338 LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD 397 L E K L +L + IF ++ Q A L LQ+ Sbjct 278 LQQFYLKLEEREKNRKLNDLLDNL----EFNQVCIFVKSVQRATQLDALLQECNFPSI-- 331 Query 398 IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG 457 + + Q ++ Q+F+ +LVAT + G+D+ NVV+ Y Sbjct 332 ------------CIHSGLQQAERISRFQQFKAFEKRILVATDIFGRGIDVERVNVVINYD 379 Query 458 LLTNEISMVQARGRARA-DQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQA 516 ++ S + GRA A + +E++ E + +D A Sbjct 380 APSDADSYLHRVGRAGRFGTKGLAISFVSSDAD--QEVLQRIQERFTVAIPTLPETVDPA 437 Query 517 EY 518 Y Sbjct 438 TY 439 Score = 44.8 bits (104), Expect = 0.002, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 52/133 (39%), Gaps = 10/133 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE 65 Q E I A+ G +++ +G GKT A + +E VDG +++L + L Q Sbjct 86 QQECIPQAILGTDVLCQAKSGMGKTAVFVLAALQQIEPVDGEVSIIILCHTRELAYQIKN 145 Query 66 EFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHD----LLICTAELLQMALTSPEEEEHV 120 EF R V T + P + + + +++ T + ++ + Sbjct 146 EFTRFSKFMTNVRTGVFYGGTPISADQEILANKEKCPHIVVGTPGRTM----ALVRDKKL 201 Query 121 ELTVFSLIVVDEC 133 + V+DEC Sbjct 202 NASKVKHFVLDEC 214 >sp|P0CQ97|SUB2_CRYNB ATP-dependent RNA helicase SUB2 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=SUB2 PE=3 SV=1 Length=442 Score = 92.6 bits (228), Expect = 1e-18, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 60/182 (33%), Gaps = 21/182 (12%) Query 338 LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD 397 L E K L +L + IF ++ Q A L LQ+ Sbjct 278 LQQFYLKLEEREKNRKLNDLLDNL----EFNQVCIFVKSVQRATQLDALLQECNFPSI-- 331 Query 398 IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG 457 + + Q ++ Q+F+ +LVAT + G+D+ NVV+ Y Sbjct 332 ------------CIHSGLQQAERISRFQQFKAFEKRILVATDIFGRGIDVERVNVVINYD 379 Query 458 LLTNEISMVQARGRARA-DQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQA 516 ++ S + GRA A + +E++ E + +D A Sbjct 380 APSDADSYLHRVGRAGRFGTKGLAISFVSSDAD--QEVLQRIQERFTVAIPTLPETVDPA 437 Query 517 EY 518 Y Sbjct 438 TY 439 Score = 44.8 bits (104), Expect = 0.002, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 52/133 (39%), Gaps = 10/133 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE 65 Q E I A+ G +++ +G GKT A + +E VDG +++L + L Q Sbjct 86 QQECIPQAILGTDVLCQAKSGMGKTAVFVLAALQQIEPVDGEVSIIILCHTRELAYQIKN 145 Query 66 EFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHD----LLICTAELLQMALTSPEEEEHV 120 EF R V T + P + + + +++ T + ++ + Sbjct 146 EFTRFSKFMTNVRTGVFYGGTPISADQEILANKEKCPHIVVGTPGRTM----ALVRDKKL 201 Query 121 ELTVFSLIVVDEC 133 + V+DEC Sbjct 202 NASKVKHFVLDEC 214 >sp|Q25225|IF4A_LEIBR Probable eukaryotic initiation factor 4A OS=Leishmania braziliensis OX=5660 GN=LbrM01_V2.0740 PE=3 SV=2 Length=403 Score = 92.2 bits (227), Expect = 1e-18, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 49/116 (42%), Gaps = 14/116 (12%) Query 352 EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ 411 E L + + + + +IF TR+ + L Q SS Sbjct 252 EHKLDTLMDLYETVSIAQSVIFANTRRKVDWIAEKLNQSN--------------HTVSSM 297 Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 M + D++ V+ F+ G+ +LV T + G+D+ H N+V+ + L TN+ + + Sbjct 298 HAEMPKSDRERVMNTFRSGSSRVLVTTDLVARGIDVHHVNIVINFDLPTNKENYLH 353 Score = 48.6 bits (114), Expect = 1e-04, Method: Composition-based stats. Identities = 22/132 (17%), Positives = 41/132 (31%), Gaps = 9/132 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT-RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q I P G +II +G GKT + + +R + + +VL L Q E Sbjct 53 QQRAIAPFTRGGDIIAQAQSGTGKTGAFSIGLLQRLDFRHNLIQGLVLSPTRELALQTAE 112 Query 66 EFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHD----LLICTAELLQMALTSPEEEEHVE 121 R+ + R + + T + + + + Sbjct 113 VISRIGEFLSNSAKFCETFVGGTRVQDDLRKLQAGVVVAVGTPGRVSDVI----KRGALR 168 Query 122 LTVFSLIVVDEC 133 ++V+DE Sbjct 169 TESLRVLVLDEA 180 >sp|Q6CDV4|IF4A_YARLI ATP-dependent RNA helicase eIF4A OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=TIF1 PE=3 SV=1 Length=395 Score = 92.2 bits (227), Expect = 1e-18, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 50/121 (41%), Gaps = 18/121 (15%) Query 347 ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA 406 E+ K E+L + + + N + +IF TR+ L L + Sbjct 245 ESYKFEVLCDL----YETINVSQAVIFCNTRRKVDYLTQALTEAD--------------F 286 Query 407 GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV 466 SS Q + +++ F+ G+ +L+ T + G+D+ ++V+ + L +N + + Sbjct 287 TVSSMHGETEQSQRDVIMKAFRTGSSRILITTDLLARGIDVQQVSLVINFDLPSNRENYI 346 Query 467 Q 467 Sbjct 347 H 347 Score = 51.0 bits (120), Expect = 2e-05, Method: Composition-based stats. Identities = 16/129 (12%), Positives = 44/129 (34%), Gaps = 6/129 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q I+P ++G +++ +G GKT + + E + + +++ L Q + Sbjct 49 QQRAILPVIKGNDVLAQAQSGTGKTATFSISALQNIDEKIKKPQALIIAPTRELAHQIQK 108 Query 66 EFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 + G + +++ T + + E ++ + Sbjct 109 VVLAFGEYMKIECHACIGGTSVAEDIRVIQEGVHVIVGTPGRIHDMI----ERRILKTDL 164 Query 125 FSLIVVDEC 133 + ++DE Sbjct 165 IKMFILDEA 173 >sp|Q9DBN9|DDX59_MOUSE Probable ATP-dependent RNA helicase DDX59 OS=Mus musculus OX=10090 GN=Ddx59 PE=1 SV=1 Length=619 Score = 93.7 bits (231), Expect = 1e-18, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 74/180 (41%), Gaps = 20/180 (11%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K + L +IL Q P ++F + A L +Q+ + G ++ Sbjct 429 KKKKLFEILNDQ--KLFKPPVLVFVDCKLGADLLSEAVQK-------------ITGLNST 473 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 S + +Q +++++++ +G ++V+T V GLD+ + +VV + + ++ V Sbjct 474 SIHSEKSQVERRDILKGLLEGDYEVVVSTGVLGRGLDLVNVKLVVNFDMPSSMDEYVHQV 533 Query 470 GR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQ 527 GR R Q+ A S+ L ++ T ++ Q ++ + R QQ Sbjct 534 GRVGRLGQNGTAITFINNNSKRLFWDVAKRVKPT---GSILPPQLLNSPYLHEQKRKEQQ 590 Score = 65.2 bits (157), Expect = 1e-09, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 13/133 (10%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK---VVVLVNRVHLVTQ- 62 Q ++I L G++I+ TG+GKT AA++ + K ++L L Q Sbjct 230 QMQMIPVGLLGRDILASADTGSGKT--AAFLLPVIIRAFSEDKTPSALILTPTRELAIQI 287 Query 63 --HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 +E L TV + G P + L + ++I T L + ++ V Sbjct 288 ERQAKELMSGLPRMKTVLLVGGLPLPPQLY-RLRQHVKVIIATPGRLLDII----KQSSV 342 Query 121 ELTVFSLIVVDEC 133 L+ ++VVDE Sbjct 343 SLSGIKIVVVDEA 355 >sp|O62591|IF4A_LEIMA Probable eukaryotic initiation factor 4A OS=Leishmania major OX=5664 GN=LmjF.01.0770 PE=3 SV=1 Length=403 Score = 92.2 bits (227), Expect = 1e-18, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 49/116 (42%), Gaps = 14/116 (12%) Query 352 EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ 411 E L + + + + +IF TR+ + L Q SS Sbjct 252 EHKLDTLMDLYETVSIAQSVIFANTRRKVDWIAEKLNQSN--------------HTVSSM 297 Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 M + D++ V+ F+ G+ +LV T + G+D+ H N+V+ + L TN+ + + Sbjct 298 HAEMPKSDRERVMNTFRSGSSRVLVTTDLVARGIDVHHVNIVINFDLPTNKENYLH 353 Score = 48.3 bits (113), Expect = 2e-04, Method: Composition-based stats. Identities = 22/132 (17%), Positives = 42/132 (32%), Gaps = 9/132 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT-RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q I P G +II +G GKT + + +R + + +VL L Q E Sbjct 53 QQRAIAPFTRGGDIIAQAQSGTGKTGAFSIGLLQRLDFRHNLIQGLVLSPTRELALQTAE 112 Query 66 EFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHD----LLICTAELLQMALTSPEEEEHVE 121 R+ + + R + + T + + + + Sbjct 113 VISRIGEFLSNSSKFCETFVGGTRVQDDLRKLQAGVIVAVGTPGRVSDVI----KRGALR 168 Query 122 LTVFSLIVVDEC 133 ++V+DE Sbjct 169 TESLRVLVLDEA 180 >sp|A4HRK0|IF4A_LEIIN Probable eukaryotic initiation factor 4A OS=Leishmania infantum OX=5671 GN=LinJ01.0780 PE=3 SV=1 Length=403 Score = 92.2 bits (227), Expect = 1e-18, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 49/116 (42%), Gaps = 14/116 (12%) Query 352 EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ 411 E L + + + + +IF TR+ + L Q SS Sbjct 252 EHKLDTLMDLYETVSIAQSVIFANTRRKVDWIAEKLNQSN--------------HTVSSM 297 Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 M + D++ V+ F+ G+ +LV T + G+D+ H N+V+ + L TN+ + + Sbjct 298 HAEMPKSDRERVMNTFRSGSSRVLVTTDLVARGIDVHHVNIVINFDLPTNKENYLH 353 Score = 48.3 bits (113), Expect = 2e-04, Method: Composition-based stats. Identities = 22/132 (17%), Positives = 42/132 (32%), Gaps = 9/132 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT-RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q I P G +II +G GKT + + +R + + +VL L Q E Sbjct 53 QQRAIAPFTRGGDIIAQAQSGTGKTGAFSIGLLQRLDFRHNLIQGLVLSPTRELALQTAE 112 Query 66 EFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHD----LLICTAELLQMALTSPEEEEHVE 121 R+ + + R + + T + + + + Sbjct 113 VISRIGEFLSNSSKFCETFVGGTRVQDDLRKLQAGVIVAVGTPGRVSDVI----KRGALR 168 Query 122 LTVFSLIVVDEC 133 ++V+DE Sbjct 169 TESLRVLVLDEA 180 >sp|Q9DGP9|DDX25_XENLA ATP-dependent RNA helicase DDX25 OS=Xenopus laevis OX=8355 GN=deadsouth PE=2 SV=1 Length=483 Score = 92.9 bits (229), Expect = 1e-18, Method: Composition-based stats. Identities = 35/176 (20%), Positives = 63/176 (36%), Gaps = 25/176 (14%) Query 352 EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ 411 E L + + I+F +TR+ A L L G + Sbjct 323 EQKYSALCNLYGVITIAQAIVFCQTRKIASWLSQKLSDD--------------GHQVALL 368 Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE------ISM 465 S + D+ ++IQ+F++G +LV T+V G+D+ ++VV + L N + Sbjct 369 SGELPVYDRADMIQRFREGREKVLVTTNVCARGIDVEQVSIVVNFDLPVNVDGSVDFETY 428 Query 466 VQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA 520 + GR R + A E + + +E + + MD E Sbjct 429 LHRIGRTGRFGKKGIAVSLIENFFVY----MLKEIEDHFNTKITKLNSMDMDEMGK 480 Score = 45.2 bits (105), Expect = 0.002, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 41/119 (34%), Gaps = 9/119 (8%) Query 18 KNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK---VVVLVNRVHLVTQHGEEFRRMLDGR 74 +N+I +G GKT AA+V K + L L Q G+ M Sbjct 137 QNLIAQSQSGTGKT--AAFVLAMLSRVDANKKYPQCICLSPTFELALQTGKVVEEMGKFC 194 Query 75 WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC 133 + + G R G G ++I T + + + + S+ V+DE Sbjct 195 AGIEVIYALRGNRPGKGSRLEA-QIVIGTPGTVLD---WCFKLRLITVENISVFVLDEA 249 >sp|Q54TD7|DDX24_DICDI ATP-dependent RNA helicase ddx24 OS=Dictyostelium discoideum OX=44689 GN=ddx24 PE=3 SV=1 Length=940 Score = 94.1 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 76/502 (15%), Positives = 156/502 (31%), Gaps = 84/502 (17%) Query 43 ETVDGAKVVVLV--NRVHLVTQHGEEFRRMLDGRW-TVTTLSGDMGPRAGFGHLARCHDL 99 + + K+ LV L Q + ++ V ++ G M + L++ ++ Sbjct 398 RSKEYRKLFSLVICPTRELAIQVTNHIKSIISHTNLKVISIVGGMASQRQQRVLSKRPEI 457 Query 100 LICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQP 159 ++ T L +T + VEL + +DE + + + S L + R Sbjct 458 VVATPGRLWELITEGHQH-LVELESLLCLGIDEADRMVEQGHFAELESILKTLPIHR--- 513 Query 160 LPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYN 219 TA + L +N ++ + + + + Sbjct 514 -------TA-----------------MSKKERLKKKETEEKRNKRRKVDKLNDK-GEMIK 548 Query 220 LCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRV 279 D D + E+ + + T +++Q S A L + Sbjct 549 GDQDDMDDQIPD---------EEMEELEQEEQNHLTTTHKRQTFVFS--ATLVNIPGDGA 597 Query 280 YALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELA 339 ++Y I ++ + +D+ I ++RL A L Sbjct 598 PTSQKKKYRKLTPIE---NLIEKVRFQRDYKL--------IDVTQKRLTA------KNLL 640 Query 340 HLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIR 399 K L ++R R ++F + A L+ + Sbjct 641 ETKIFCNLEEKDMYLYYFVERY-----PGRTLVFVNSIDCARRLIPIFNILEVPVF---- 691 Query 400 AQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLL 459 + M Q+ + + + +F+ +L+AT VA GLDIP V+ Y + Sbjct 692 ----------ALHAQMQQKQRLKNLDRFRTLDNVVLIATDVAARGLDIPLVQHVIHYQVP 741 Query 460 TNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM----D 514 + GR AR+DQ + V ++ ++E + ++ M D Sbjct 742 RTTQLYIHRSGRTARSDQDGISVVLVTPKERPLYIKLDSSIEHDIGNFPTDIRYMEGVRD 801 Query 515 QAEYQAKIRDLQQAALTKRAAQ 536 + E +I L +L + Sbjct 802 RIELAKEIDKLSHQSLKDNREK 823 >sp|Q1DI07|SUB2_COCIM ATP-dependent RNA helicase SUB2 OS=Coccidioides immitis (strain RS) OX=246410 GN=SUB2 PE=3 SV=1 Length=443 Score = 92.6 bits (228), Expect = 2e-18, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 79/229 (34%), Gaps = 24/229 (10%) Query 285 RRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATH 344 R + + V +A R K E + + L Sbjct 226 RDVQEIFRSTPADKQVMMFSATLSQEIRPICKKFMRNPLEVYVDDDTKLTLHGLQQYYIK 285 Query 345 GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI 404 E K L ++L + IIF ++ A+ L L++ Sbjct 286 LSEAEKNRKLNELLDNL----EFNQVIIFVKSTLRANELDKLLRECNFPSI--------- 332 Query 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 + + ++Q ++ + ++F++ + VAT V G+DI N+ + Y + + S Sbjct 333 -----AVHSGVSQEERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDMPADADS 387 Query 465 MVQARGRARADQS---VYAFVATEGSRELKRELINE---ALETLMEQAV 507 + GRA + +FV++E + +++ AL E+ V Sbjct 388 YLHRVGRAGRFGTKGLSISFVSSEDDMKTLKDIEKRFEVALPEYPEEGV 436 Score = 49.0 bits (115), Expect = 1e-04, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 47/135 (35%), Gaps = 14/135 (10%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG-AKVVVLVNRVHLVTQ--- 62 Q I A+ +++ +G GKT LE V G ++V+ + L Q Sbjct 87 QQVCIPTAILKVDVLCQAKSGLGKTAVFVLTTLNQLEPVPGECSILVMCHTRELAYQIKN 146 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHD----LLICTAELLQMALTSPEEEE 118 F + L T G P + D +++ T L AL ++ Sbjct 147 EYARFSKYLPDVKTAVFYGG--TPMQKDIEVLSSKDTYPNIVVGTPGRL-NALVREKK-- 201 Query 119 HVELTVFSLIVVDEC 133 + L V+DEC Sbjct 202 -LSLRNIKAFVLDEC 215 >sp|Q5BET6|ROK1_EMENI ATP-dependent RNA helicase rok1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=rok1 PE=3 SV=1 Length=742 Score = 93.7 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 53/294 (18%), Positives = 102/294 (35%), Gaps = 25/294 (9%) Query 232 LLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDAL 291 L+ L D L L R + + L L + L +L Sbjct 369 LVNALSDNKTKPLATLPLVRNLVLDEADVLLDPLFRDQTLDIWRSCTHPEL-----RASL 423 Query 292 LIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH-LATHGPENPK 350 +++ +A + + +T+ R ++ L D + H L E K Sbjct 424 WSATMGSSIEDMAKTTIKERKLSLPQTKSYPLLRLVVGLKDSAIPNIKHKLVYAATEQGK 483 Query 351 LEMLEKILQRQFSSSNSPRG----IIFTRTRQSAHSL-LLWLQQQQGLQTVDIRAQLLIG 405 L L +++ ++++ R +IFT+T A +L L R +L Sbjct 484 LLGLRQLIHPTAATTSDVRLRPPFLIFTQTIPRAIALHSELLYDIPPEAGGSARIAVL-- 541 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465 + ++ + ++++ F+ G + +LV T + G+D N VV Y + + Sbjct 542 ------HSDLSDTQRSDIMKGFRKGEIWILVTTDLLARGVDFRGINGVVNYDIPNSPAVY 595 Query 466 VQARGR----ARADQSVYAFVATEGSRELK--RELINEALETLMEQAVAAVQKM 513 V GR R + E +K +I+ + + E +VQK Sbjct 596 VHRVGRTGRAGREGGVAVTYYTKEDIPYVKSIANIIDVSEKLRGENGERSVQKW 649 Score = 46.3 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 48/153 (31%), Gaps = 40/153 (26%) Query 20 IIIWLPTGAGKTRAAAYV-----AKRHLETVDGAKVVV---LVNRVHLVTQHGEEFRRM- 70 +++ PTG+GKT + + RH T + + + L +Q E R++ Sbjct 244 LLVVAPTGSGKTL-SFMIPVINKIVRHHHTHPEERGIFAVVVAPTKELASQIVNEGRKLA 302 Query 71 --LDGRWTVTTLSGDMGPRAGFGHLAR----------------------------CHDLL 100 + T+ + R D+L Sbjct 303 LGTGVKVTLMKKGMRVVERENEDEDVLDESNSESSESESDERTPNNKNKGPVPITKSDIL 362 Query 101 ICTAELLQMALTSPEEEEHVELTVFSLIVVDEC 133 + T L AL+ + + L + +V+DE Sbjct 363 VSTPLQLVNALSDNKTKPLATLPLVRNLVLDEA 395 >sp|Q54E49|DDX6_DICDI Probable ATP-dependent RNA helicase ddx6 OS=Dictyostelium discoideum OX=44689 GN=ddx6 PE=3 SV=1 Length=423 Score = 92.2 bits (227), Expect = 2e-18, Method: Composition-based stats. Identities = 52/350 (15%), Positives = 103/350 (29%), Gaps = 31/350 (9%) Query 165 GLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRR 224 G TAS K D + + L + C +L ++ + Sbjct 98 GKTASFLIPALEKTDPTKDVIQVLILVPTRELALQTSQVCKELGKYMN-----VQVMAST 152 Query 225 SQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHL 284 D + +L + +H + P ++ V LS + + ++ + Sbjct 153 GGTSLKDDIMRLYNPVHILVATPGRVLDLA----QKNVANLSNCHTMIMDEADKLLSQEF 208 Query 285 RRYNDALL-IHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLAT 343 + + L+ R + +A + K L + + + + Sbjct 209 QPLVEQLINFLPQQRQILLFSATFPVTVKSF--KEHYLQQAFEINLMEELTLKGVTQYYA 266 Query 344 HGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLL 403 E K+ L FS + IIF + L + + Sbjct 267 FVEERQKI----HCLNTLFSKLQINQSIIFCNSVNRVELLAKKITE-------------- 308 Query 404 IGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI 463 +G M Q + V F++G LV++ + G+DI NVV+ + + Sbjct 309 LGYSCFFIHAKMVQAHRNRVFHDFRNGACRNLVSSDLFTRGIDIQDVNVVINFDFPKHSE 368 Query 464 SMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQK 512 + + GR R A I + L T ++ + K Sbjct 369 TYLHRIGRSGRFGHLGLAINLITYEDRFSLYKIEQELGTEIKPIPPVIDK 418 Score = 49.4 bits (116), Expect = 8e-05, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 50/131 (38%), Gaps = 10/131 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA---KVVVLVNRVHLVTQH 63 Q + I AL G++I+ G GKT A+++ +T +V++LV L Q Sbjct 76 QEKAIPIALAGRDIMARAKNGTGKT--ASFLIPALEKTDPTKDVIQVLILVPTRELALQT 133 Query 64 GEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 + + + V +G + L +L+ T + ++ L Sbjct 134 SQVCKELGKYMNVQVMASTGGTSLKDDIMRLYNPVHILVATPGRVLD----LAQKNVANL 189 Query 123 TVFSLIVVDEC 133 + +++DE Sbjct 190 SNCHTMIMDEA 200 >sp|Q75BL8|IF4A_EREGS ATP-dependent RNA helicase eIF4A OS=Eremothecium gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=TIF1 PE=3 SV=1 Length=396 Score = 91.8 bits (226), Expect = 2e-18, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 48/116 (41%), Gaps = 14/116 (12%) Query 352 EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ 411 E L + S + + +IF TR+ L L S+ Sbjct 246 EYKYDCLSDLYDSISVTQAVIFCNTRRKVEELTKRLTDDS--------------FTVSAI 291 Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 + + Q + ++++F+ G+ +L++T + G+D+ ++V+ Y L N+ + + Sbjct 292 YSDLPQAQRDTIMKEFRTGSSRILISTDLLARGIDVQQVSLVINYDLPNNKENYIH 347 Score = 61.4 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 37/211 (18%), Positives = 71/211 (34%), Gaps = 15/211 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT---RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ- 62 Q I+P +EG +++ +G GKT AA +R E++ + ++L L Q Sbjct 49 QQRAILPIIEGHDVLAQAQSGTGKTGTFSIAAL--QRIDESIKAPQALILAPTRELALQI 106 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 L V G PR L +++ T + + E + + Sbjct 107 QKVVMALALHMDVKVHACIGGTDPREDAEALRAGAQIVVGTPGRVFDMI----ERRNFKT 162 Query 123 TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAI 182 + ++DE I + L P QV+ L+A+ D + Sbjct 163 DHIKMFILDEADEMLSSGFKEQIYKIFTMLP-----PTTQVVLLSATMPKEVLDVTDKFM 217 Query 183 NHVLQLCANLDTWCIMSPQNCCPQLQEHSQQ 213 N +++ D + Q ++ + Sbjct 218 NKPVRILVKKDALTLEGIQQYYINVESEEYK 248 >sp|Q10PV9|RH47B_ORYSJ DEAD-box ATP-dependent RNA helicase 47B OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0219700 PE=2 SV=1 Length=573 Score = 93.3 bits (230), Expect = 2e-18, Method: Composition-based stats. Identities = 40/216 (19%), Positives = 77/216 (36%), Gaps = 9/216 (4%) Query 288 NDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPE 347 A + +RA + V + R +L+ D N ++ Sbjct 340 VSATIPFSVIRAARSWGHDPVLVRAMSVVPLDSITVPRPVLSQTDANPNSPSNSVNQAAV 399 Query 348 N---PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI 404 N P LE I + Q R I A +++ ++ + L+ V + + Sbjct 400 NSLPPSLEHYYCISKAQHKVDTLRRCI----HALEAQTVIAFMNNTKPLKDVVFKLEAR- 454 Query 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 G + + + + V++KF+DG +LV ++ GLD+P C++V+ L T+ Sbjct 455 GMKATELHGDLGKLARSTVLKKFKDGEFRVLVTNELSARGLDVPECDLVINLDLPTDSTH 514 Query 465 MVQARGR-ARADQSVYAFVATEGSRELKRELINEAL 499 GR R + E + + + L Sbjct 515 YAHRAGRTGRLGRKGTVVTICEETETFVVRKMRKQL 550 Score = 42.5 bits (98), Expect = 0.014, Method: Composition-based stats. Identities = 28/156 (18%), Positives = 50/156 (32%), Gaps = 21/156 (13%) Query 26 TGAGKTRAAAYVAKRHL------------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDG 73 TG+GKT A + + G + V++ L Q E ++L Sbjct 177 TGSGKTLAYLLPILSEIGPLKRPTEQDGSDKRSGVEAVIVAPSRELGMQIVREVEKILGP 236 Query 74 --RWTVTTLSGDMGPRAGFGHLARCHDLLIC-TAELLQMALTSPEEEEHVELTVFSLIVV 130 + V L G L + L++ T + + H +V+ Sbjct 237 NDKRLVQQLVGGANRSRQEEALKKNKPLIVVGTPGRISEISAGGKLHTHGCR----FLVL 292 Query 131 DECHHTHKDTVYNVIMSQYLELKLQRAQPLPQ-VLG 165 DE Y M + LE +++ + +LG Sbjct 293 DEVDQLLS-FNYREDMHRILEHVGRKSGTSSRDILG 327 >sp|P0CR04|ROK1_CRYNJ ATP-dependent RNA helicase ROK1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=ROK1 PE=3 SV=1 Length=620 Score = 93.3 bits (230), Expect = 2e-18, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 53/154 (34%), Gaps = 19/154 (12%) Query 345 GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI 404 G E+ KL L ++ S +IF ++ A L L +L Sbjct 403 GSESGKLLALRNLIS---SGQLPYPSLIFVQSIDRAEELYKTL--------------VLD 445 Query 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 G + + + E I+ F+ G + +LV T V G+D VV+ Y S Sbjct 446 GIKVDAVHGGKAKTKRDEAIKDFRVGAVWMLVVTEVLARGMDFRGVKVVINYDFPQTVPS 505 Query 465 MVQARGR-ARADQSVYAF-VATEGSRELKRELIN 496 + GR RA + A R + N Sbjct 506 YIHRIGRTGRAGRPGKAITFFNIEDGPYLRTIAN 539 Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 30/88 (34%), Gaps = 10/88 (11%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA----------KVVVLVNRVHLVTQHG 64 LE ++ + PTG+GKT + L + +V+V L Q Sbjct 158 LEDRDTLCVAPTGSGKTLSYVLPTIVKLREPARKLKGTEEGKGVRALVVVPTHDLAVQIQ 217 Query 65 EEFRRMLDGRWTVTTLSGDMGPRAGFGH 92 + + GR + + +A + Sbjct 218 GVIKAVTMGRHWRSMVLTKATEKAVWES 245 >sp|P0CR05|ROK1_CRYNB ATP-dependent RNA helicase ROK1 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=ROK1 PE=3 SV=1 Length=620 Score = 93.3 bits (230), Expect = 2e-18, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 53/154 (34%), Gaps = 19/154 (12%) Query 345 GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI 404 G E+ KL L ++ S +IF ++ A L L +L Sbjct 403 GSESGKLLALRNLIS---SGQLPYPSLIFVQSIDRAEELYKTL--------------VLD 445 Query 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 G + + + E I+ F+ G + +LV T V G+D VV+ Y S Sbjct 446 GIKVDAVHGGKAKTKRDEAIKDFRVGAVWMLVVTEVLARGMDFRGVKVVINYDFPQTVPS 505 Query 465 MVQARGR-ARADQSVYAF-VATEGSRELKRELIN 496 + GR RA + A R + N Sbjct 506 YIHRIGRTGRAGRPGKAITFFNIEDGPYLRTIAN 539 Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 30/88 (34%), Gaps = 10/88 (11%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA----------KVVVLVNRVHLVTQHG 64 LE ++ + PTG+GKT + L + +V+V L Q Sbjct 158 LEDRDTLCVAPTGSGKTLSYVLPTIVKLREPARKLKGTEEGKGVRALVVVPTHDLAVQIQ 217 Query 65 EEFRRMLDGRWTVTTLSGDMGPRAGFGH 92 + + GR + + +A + Sbjct 218 GVIKAVTMGRHWRSMVLTKATEKAVWES 245 >sp|A7TEG8|MAK5_VANPO ATP-dependent RNA helicase MAK5 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 GN=MAK5 PE=3 SV=1 Length=763 Score = 93.7 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 44/266 (17%), Positives = 81/266 (30%), Gaps = 39/266 (15%) Query 355 EKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH 414 + F S + +IF S L +L ++I + + Sbjct 463 RDLFCYYFVSMYPGKTLIFCNAIDSVKKLTAYLNN------LNISCFQI--------HSS 508 Query 415 MTQRDQQEVIQKFQD--------GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV 466 MTQ+++ ++++Q G +LV + VA GLDIP V+ Y L + Sbjct 509 MTQKNRLRNLERYQQQSEKNKILGKPTVLVGSDVAARGLDIPGIQHVIHYHLPRTADVYI 568 Query 467 QARGR-ARADQSVYAFVAT--EGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIR 523 GR ARA+ + + E + R+L + + +K + I Sbjct 569 HRSGRTARANNEGVSVMICSPEEAMGPLRKLRKTLANKSGKDIIMGKKKWQKTVTMLPID 628 Query 524 D--LQQAALTKRAAQAAQRENQRQQFPVEHVQLLCINCMVAVGHGSDLRKVEGTHHVNVN 581 D L Q R A + + + G D+ + + Sbjct 629 DTILSQLKERSRLASELADHDLASSSLQKDDTWMKKAAEDL---GVDI---------DSD 676 Query 582 PNFSNYYNVSRDPVVINKVFKDWKPG 607 + + NK + Sbjct 677 DEIKDTFLAKNINKKRNKTLGKDQKK 702 Score = 53.6 bits (127), Expect = 5e-06, Method: Composition-based stats. Identities = 27/145 (19%), Positives = 51/145 (35%), Gaps = 15/145 (10%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTR-----AAAYVAKRHLETVDGAKVVVLVNRVHLVT 61 Q E I AL+G++I+ TG+GKT + K T + L Sbjct 219 QEEAIPMALKGEDIMGKASTGSGKTLAYGIPIIEKLMKSKSNTAPIGLIF--TPTRELAK 276 Query 62 QHGEEFRRML-----DGRWTVTTLSGDMGPRAGFGHLA--RCHDLLICTAELLQMALTSP 114 Q + R++ + +L+G + + L +++ T L Sbjct 277 QVTDHLRKIASLIVDKSPHAILSLTGGLSIQKQERLLKYEGSGRIVVATPGRFLE-LIEK 335 Query 115 EEEEHVELTVFSLIVVDECHHTHKD 139 ++ + S +V+DE +D Sbjct 336 DKTLVERFSQISTLVLDEADRLLQD 360 >sp|A5E2I8|SPB4_LODEL ATP-dependent rRNA helicase SPB4 OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) OX=379508 GN=SPB4 PE=3 SV=1 Length=637 Score = 93.3 bits (230), Expect = 2e-18, Method: Composition-based stats. Identities = 41/201 (20%), Positives = 79/201 (39%), Gaps = 14/201 (7%) Query 343 THGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL 402 PE+ ML+ + QF + I++ T S L + DI Sbjct 260 MIEPEHKLTTMLQMLRDNQFK-----KAIVYFPTCTSVKHFYQMLSKLCKSSANDIDISA 314 Query 403 LIGAGNSSQSTHMTQRDQQEVIQKFQDG----TLNLLVATSVAEEGLDIPHCNVVVRYGL 458 L+ S +T + + ++KF +G +L+AT VA G+DIP ++V++ Sbjct 315 LL---FFSLHGQLTTKSRLNTLEKFTEGNDESKKYILMATDVAARGIDIPDVDLVIQIDP 371 Query 459 LTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAE 517 T+ + GR RA++ A V + + + ++++ + + D Sbjct 372 PTDPSVFLHRCGRTGRANKVGRAIVMLNNDTQEEDYVGFMEVKSVFMTKIDPPEDKDNHS 431 Query 518 YQAKI-RDLQQAALTKRAAQA 537 + K + L++ L RA Sbjct 432 FHNKFQKKLRKYMLEDRARHE 452 Score = 44.0 bits (102), Expect = 0.005, Method: Composition-based stats. Identities = 26/143 (18%), Positives = 51/143 (36%), Gaps = 31/143 (22%) Query 18 KNIIIWLPTGAGKTRA-AAYVAKRHLE---------------TVDGAKVVVLVNRVHLVT 61 K++I+ TG+GKT A A V ++ + +V+ L Sbjct 48 KDVIVEAVTGSGKTLAFAIPVLQKVSKRLYQVPEGEEKPEPVKRGHMLAIVMAPTRELAK 107 Query 62 QHGEEFRRML---------DGRWTVTTLSGDMGPRAGFGHLARCH--DLLICTAELLQMA 110 Q F ++L + R L G +G + + +LI T L Sbjct 108 QIQMVFDKVLELLPEEDSYEPRIKTQLLVGFLGNVREDLDSYQENRPQILIATPGRLLDF 167 Query 111 LTSPEEEEHVELTVFSLIVVDEC 133 ++ + V+ + ++++DE Sbjct 168 MS----LQIVKTSSLEIVILDEA 186 >sp|Q59ZH9|MAK5_CANAL ATP-dependent RNA helicase MAK5 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=MAK5 PE=3 SV=2 Length=782 Score = 93.7 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 38/195 (19%), Positives = 69/195 (35%), Gaps = 33/195 (17%) Query 310 YHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPR 369 R K+ L ++ L +++ T NPK + +I + + R Sbjct 416 LDRHQKGKSSSLMGNDEIVQLLNEKLKFKDKKPTLVDANPKEIVSGQITEALVECGPTER 475 Query 370 --------------GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHM 415 ++F + S L+ L S + M Sbjct 476 DLYLYYFLLMYKGSTLVFANSIDSVKRLVPLLNNLNIPAF--------------SIHSSM 521 Query 416 TQRDQQEVIQKFQD----GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 Q+ + ++KF++ + +LVA+ VA GLDIP+ + VV Y L + + GR Sbjct 522 IQKQRLRALEKFKEASQKNEVAVLVASDVAARGLDIPNIDHVVHYHLPRSADVYIHRSGR 581 Query 472 -ARADQSVYAFVATE 485 ARA + + + Sbjct 582 TARAGKEGVSVMFCS 596 Score = 54.4 bits (129), Expect = 3e-06, Method: Composition-based stats. Identities = 32/186 (17%), Positives = 65/186 (35%), Gaps = 25/186 (13%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTR---AAAY----VAKRHLETVDGAK-------VVV 52 Q E I AL GK++I TG+GKT + ++ + K ++ Sbjct 224 QKETIPIALSGKDVIGKATTGSGKTLAYGIPILEKYIQSLNLIKQNNKDKKINHPTGIIF 283 Query 53 LVNRVHLVTQHGEEFRRMLDGR----WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQ 108 L Q + ++ + +++G + + L +++ T + Sbjct 284 -APTRELAHQVVDHLNKLAKYSPLSTRGIVSITGGLSIQKQQRLLRHGPGIIVATPGRML 342 Query 109 MALTSPEEEEHVELTVFSLIVVDECHHTHKD---TVYNVIMSQY--LELKLQRAQPLPQV 163 L + E L +IV+DE +D + I+ + K + + Q Sbjct 343 E-LVQGDSELAKRLASIDIIVLDEADRLLQDGHFDEFEKILELFGKNRPKSKSIEWKWQT 401 Query 164 LGLTAS 169 L +A+ Sbjct 402 LVFSAT 407 >sp|A7TGW7|DBP10_VANPO ATP-dependent RNA helicase DBP10 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 GN=DBP10 PE=3 SV=1 Length=977 Score = 93.7 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 41/226 (18%), Positives = 76/226 (34%), Gaps = 31/226 (14%) Query 264 KLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCA 323 K+SE + L + + Y +I + D + L DF + ++ Sbjct 331 KISENLEILFLSTKNEERENNLLYLLQDVIKIPLGTDDQIKKLSDFNKSLSDSDSEDEDN 390 Query 324 ERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSL 383 + + + + K + L+ + + S I+F TR + Sbjct 391 KGKQNSRKSKKG--------------KFQKLKVSASNELPTEKST--IVFAPTRHHVEYI 434 Query 384 LLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEE 443 L+ L G + Q ++ + F+ G ++LV T VA Sbjct 435 TQLLKDS------GFLVSYLYGT--------LDQHARKRQLLNFRAGLTSILVVTDVAAR 480 Query 444 GLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSR 488 G+DIP V+ Y L + + GR ARA +A+ + Sbjct 481 GVDIPMLANVINYSLPASSKIFIHRVGRTARAGNRGWAYSIVSETE 526 Score = 59.4 bits (142), Expect = 1e-07, Method: Composition-based stats. Identities = 49/279 (18%), Positives = 91/279 (33%), Gaps = 21/279 (8%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA---KVVVLVNRVHLVTQHGEEFRRML 71 L+ ++I+ TG+GKT A L++ + V+L L Q F+ Sbjct 156 LQKRDIVGMARTGSGKTAAFVLPMIEKLKSHSSKIGARAVILSPSRELALQTHRVFKEFS 215 Query 72 DG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV 130 G L+G F + D+++ T + E ++L +V Sbjct 216 KGTHLRSVLLTGGDSLEDQFSMMMSNPDVIVATPGRFLH----LKVEMSLDLKTVEYVVF 271 Query 131 DECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS-PGTGGASKLDGAINHVL--- 186 DE + + + L L Q L +A+ P + G N VL Sbjct 272 DEADRL-----FEMGFQEQLNELLAALPMNRQTLLFSATLPSSLVDFAKAGLTNPVLVRL 326 Query 187 ----QLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHD 242 ++ NL+ + + + Q + L D K L D + Sbjct 327 DAETKISENLEILFLSTKNEERENNLLYLLQDVIKIPLGTDDQIKKLSDFNKSLSDSDSE 386 Query 243 HLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYA 281 + ++ + Q +K+S + L + V+A Sbjct 387 DEDNKGKQNSRKSKKGKFQKLKVSASNELPTEKSTIVFA 425 >sp|A5DY34|DRS1_LODEL ATP-dependent RNA helicase DRS1 OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) OX=379508 GN=DRS1 PE=3 SV=1 Length=686 Score = 93.3 bits (230), Expect = 2e-18, Method: Composition-based stats. Identities = 42/216 (19%), Positives = 81/216 (38%), Gaps = 29/216 (13%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K E L+ + R ++FTRT+ AH + + L + + L GA Sbjct 424 KREELKPAVLYLLLKKLEGRTVVFTRTKVEAH------KLRIILGLLGLTVAELHGA--- 474 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 +TQ + ++ F++ +N+L+ T +A GLDI V+ Y + Sbjct 475 -----LTQEQRLANVKAFKN-NVNVLICTDLAARGLDI-RIEYVINYDMPKTYEIYTHRV 527 Query 470 GR-ARADQSVYAFVATEGSRELKRELINEALETLME-----------QAVAAVQKMDQAE 517 GR ARA + + S + R ++ A++ + + K+++ Sbjct 528 GRTARAGRKGTSISFVGESMQ-DRNIVKNAIQFNSRSVARKIDWDEVEKIQTKIKLNEGA 586 Query 518 YQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQ 553 + I + +QA RA + ++ E Sbjct 587 IEEVIEEEKQAREIMRAEMQLNKAENLMKYEKEIKS 622 Score = 59.0 bits (141), Expect = 1e-07, Method: Composition-based stats. Identities = 28/136 (21%), Positives = 52/136 (38%), Gaps = 12/136 (9%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVA-----KRHLETVDGAKVVVLVNRVHLVT 61 Q I AL GK+I+ TG+GKT AAY+ +++ K ++L L Sbjct 223 QASTIPIALLGKDIVASAQTGSGKT--AAYLIPIIERLLYVKNSTSTKAIILTPTRELAI 280 Query 62 QHGEEFRRMLDGRWTV--TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 Q + R++ + G + + L D++I T L + + Sbjct 281 QVHDVGRKLGQFVSNLNFGMAVGGLSLKQQEQQLKTRPDIVIATPGRLIDHIRNSPS--- 337 Query 120 VELTVFSLIVVDECHH 135 + ++++DE Sbjct 338 FSVEDVQVLIIDEADR 353 >sp|Q2UQW3|ROK1_ASPOR ATP-dependent RNA helicase rok1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=rok1 PE=3 SV=1 Length=725 Score = 93.3 bits (230), Expect = 2e-18, Method: Composition-based stats. Identities = 48/253 (19%), Positives = 92/253 (36%), Gaps = 18/253 (7%) Query 232 LLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDAL 291 L+ L + L R + + L L + L +L Sbjct 357 LVNALSANKTKPMATLPLVRNIVLDEADVLLDPLFREQTLDIWRACTHPEL-----RASL 411 Query 292 LIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH-LATHGPENPK 350 +++ LA ++ + T+ R ++ L D + H L E K Sbjct 412 WSATMGSSIEDLAKSTIKERKDASSLTKSYPLYRLVVGLKDSAIPNIQHKLVYAATEQGK 471 Query 351 LEMLEKILQRQFSSSNSPRG----IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA 406 L L ++L ++++ R +IFT+T A +L L+ DI + + Sbjct 472 LLGLRQLLHPAAAAASDIRLRPPFLIFTQTIPRAVALHSELR-------YDIPPEAGGSS 524 Query 407 GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV 466 + + ++ + E+++ F+ G + +LV T + G+D N VV Y + + V Sbjct 525 RIAVLHSDLSDGQRSEIMKNFRKGEIWILVTTDLLARGIDFRGINGVVNYDIPNSAAVYV 584 Query 467 QARGR-ARADQSV 478 GR RA + Sbjct 585 HRVGRTGRAGREG 597 Score = 46.3 bits (108), Expect = 8e-04, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 49/152 (32%), Gaps = 38/152 (25%) Query 20 IIIWLPTGAGKTR------AAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGEEFRRMLD 72 +++ PTG+GKT V H + + VV+ L +Q E R+++ Sbjct 232 LLVVAPTGSGKTLSFLIPVINKIVRHHHGQQEERGIFAVVVAPTKELASQIVNEGRKLVS 291 Query 73 GRWTVTTLSGD-------------------------------MGPRAGFGHLARCHDLLI 101 G TL ++ D+L+ Sbjct 292 GTGVKITLMKKGMQVVEREDDDEDVLDEGSSESSESEDDEKTTEKKSKGKAPVTKSDILV 351 Query 102 CTAELLQMALTSPEEEEHVELTVFSLIVVDEC 133 T L AL++ + + L + IV+DE Sbjct 352 TTPLQLVNALSANKTKPMATLPLVRNIVLDEA 383 >sp|O74393|MAK5_SCHPO ATP-dependent RNA helicase mak5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mak5 PE=1 SV=1 Length=648 Score = 93.3 bits (230), Expect = 2e-18, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 51/136 (38%), Gaps = 20/136 (15%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K L ++ R + ++F + + +L + + Sbjct 377 KDLYLYYLIMRY-----PGKTMVFANGIEDIKRITPFLNELKVPSYP------------- 418 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + Q+ + + ++KF++ +LV T VA G+DIP V+ Y + V Sbjct 419 -LHAQLDQKKRLQSLEKFKNNPKGVLVCTDVAARGIDIPSVTHVIHYHVPHTADMYVHRS 477 Query 470 GR-ARADQSVYAFVAT 484 GR ARA++ + + Sbjct 478 GRTARANEDGVSILMC 493 Score = 57.9 bits (138), Expect = 2e-07, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 45/120 (38%), Gaps = 6/120 (5%) Query 20 IIIWLPTGAGKTRA-AAYVAKRHLETVDGA--KVVVLVNRVHLVTQHGEEFRRMLDGRW- 75 II TG+GKT A + + L VD + +V+ L Q + F + Sbjct 162 IIGKADTGSGKTLAFGIPILEHCLRNVDAKYVQALVVAPTRELAHQICQHFELIKPSPNI 221 Query 76 TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH 135 V +++G + + L + +++ T L + + + +V+DE Sbjct 222 RVMSITGGLAVQKQQRLLNKHPHVVVATPGRLWSVINENNLTGNFK--KIKCLVLDEADR 279 >sp|A6R9U4|MAK5_AJECN ATP-dependent RNA helicase MAK5 OS=Ajellomyces capsulatus (strain NAm1 / WU24) OX=2059318 GN=MAK5 PE=3 SV=1 Length=772 Score = 93.3 bits (230), Expect = 2e-18, Method: Composition-based stats. Identities = 31/146 (21%), Positives = 55/146 (38%), Gaps = 22/146 (15%) Query 343 THGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL 402 P K L ++ R ++FT + + L +LQ Sbjct 470 VECPAMEKDLYLYTLMLYH----PQHRTLVFTNSISAVRRLTAFLQNLNLPAL------- 518 Query 403 LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN---LLVATSVAEEGLDIPHCNVVVRYGLL 459 + + M Q+ + +++F T + +LVAT VA GLDI ++++ Y + Sbjct 519 -------ALHSSMAQKARLRSVERFSSPTADPSSILVATDVAARGLDIKGIDLIIHYHVP 571 Query 460 TNEISMVQARGR-ARADQSVYAFVAT 484 + V GR ARA S + + Sbjct 572 RTADTYVHRSGRTARASASGKSILLC 597 Score = 43.2 bits (100), Expect = 0.009, Method: Composition-based stats. Identities = 19/130 (15%), Positives = 37/130 (28%), Gaps = 23/130 (18%) Query 26 TGAGKTRAAAYVAKRHLETVDGAK---------------VVVLVNRVHLVTQ---HGEEF 67 TG+GKT A + + ++L L Q H Sbjct 233 TGSGKTLAFGIPILEYYLKNRREEPVQHNDAELSSKYPIALILSPTRELAHQLSKHITAL 292 Query 68 RRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVE-LTVF 125 + L+G + + + D++I T L +++ + Sbjct 293 CTNAPNINARIALLTGGLSVQKQ-QRVLANADIVIGTPGRLWDVISTG--HGLLRKFQNI 349 Query 126 SLIVVDECHH 135 +V+DE Sbjct 350 KFLVIDEADR 359 >sp|Q27268|DX39B_DROME ATP-dependent RNA helicase WM6 OS=Drosophila melanogaster OX=7227 GN=Hel25E PE=1 SV=1 Length=424 Score = 91.8 bits (226), Expect = 2e-18, Method: Composition-based stats. Identities = 39/199 (20%), Positives = 75/199 (38%), Gaps = 29/199 (15%) Query 310 YHREHVTKTQILCAERRLLALFDDRKNELAHLATHG--------PENPKLEMLEKILQRQ 361 ++K ++ + + ++ A L HG EN K + L ++L Sbjct 223 MFSATLSKDIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVNLKENEKNKKLFELLDVL 282 Query 362 FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ 421 + +IF ++ Q +L L +Q R MTQ ++ Sbjct 283 ----EFNQVVIFVKSVQRCVALSQLLTEQNFPAIGIHR--------------GMTQEERL 324 Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQS---V 478 Q+F+D +LVAT++ G+DI N+V Y + + + + RA + Sbjct 325 NRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLA 384 Query 479 YAFVATEGSRELKRELINE 497 FV+ E ++ E+ + Sbjct 385 ITFVSDENDAKILNEVQDR 403 Score = 44.0 bits (102), Expect = 0.004, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 49/133 (37%), Gaps = 11/133 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG--AKVVVLVNRVHLVTQ-- 62 Q E I A+ G +I+ +G GKT + LE D V+V+ + L Q Sbjct 68 QHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSDNNTCHVLVMCHTRELAFQIS 127 Query 63 -HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCH-DLLICTAELLQMALTSPEEEEHV 120 E F + + V G M + L +++ T + AL ++ Sbjct 128 KEYERFSKYMP-TVKVAVFFGGMAIQKDEETLKSGTPHIVVGTPGRIL-ALIRNKKLNLK 185 Query 121 ELTVFSLIVVDEC 133 L F L DEC Sbjct 186 LLKHFVL---DEC 195 >sp|Q6FQQ6|IF4A_CANGA ATP-dependent RNA helicase eIF4A OS=Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=TIF1 PE=3 SV=1 Length=396 Score = 91.4 bits (225), Expect = 2e-18, Method: Composition-based stats. Identities = 22/116 (19%), Positives = 51/116 (44%), Gaps = 14/116 (12%) Query 352 EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ 411 + L + S + + +IF TR+ L L SS Sbjct 246 QFKYDCLTDLYDSISVTQAVIFCNTRRKVEELTQRLTADN--------------FTVSSI 291 Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 + + Q+++ ++++F+ G+ +L++T + G+D+ ++V+ Y L TN+ + + Sbjct 292 YSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPTNKENYIH 347 Score = 47.1 bits (110), Expect = 3e-04, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 43/130 (33%), Gaps = 9/130 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT---RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQH 63 Q IMP +EG +++ +G GKT AA +R + + ++L L Q Sbjct 50 QQRAIMPIIEGNDVLAQAQSGTGKTGTFSIAAL--QRIDPAIKAPQALMLAPTRELALQI 107 Query 64 GEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELT 123 + + R +++ T + + + ++ Sbjct 108 QKVVMALGFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRK----FKVD 163 Query 124 VFSLIVVDEC 133 + ++DE Sbjct 164 NIKMFILDEA 173 >sp|Q5BCI0|MAK5_EMENI ATP-dependent RNA helicase mak5 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=mak5 PE=3 SV=1 Length=770 Score = 93.3 bits (230), Expect = 2e-18, Method: Composition-based stats. Identities = 30/121 (25%), Positives = 48/121 (40%), Gaps = 18/121 (15%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 R ++FT + + + LQ Q + + M Q+ + +++F Sbjct 501 RTLVFTNSISAVRRITQLLQTLQLPAL--------------ALHSSMAQKARLRSVERFS 546 Query 429 DGTLN---LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVAT 484 T N +LVAT VA GLDI + V+ Y + V GR ARA S + + Sbjct 547 SSTANPGTILVATDVAARGLDIKGIDFVIHYHAPRTADTYVHRSGRTARAGASGKSVIIC 606 Query 485 E 485 Sbjct 607 S 607 Score = 50.2 bits (118), Expect = 5e-05, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 45/138 (33%), Gaps = 19/138 (14%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVV-------------VLVNRVHLVT 61 L+G ++I TG+GKT A H + K + +L L Sbjct 232 LDGHDVIGKASTGSGKTLAFGLPILEHYLERERRKTIDSEEEKEKIPIALILSPTRELAH 291 Query 62 Q-HGEEFRRMLDGR---WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE 117 Q + + + L+G + + L D++I T + L + + Sbjct 292 QLQKHIYGLISNAPGVNARTALLTGGLSVQKQ-QRLLETADIVIGTPGRVWEVLRTGQGL 350 Query 118 EHVELTVFSLIVVDECHH 135 + +V+DE Sbjct 351 -IRRMQGIKFLVIDEADR 367 >sp|Q6H874|RH47A_ORYSJ DEAD-box ATP-dependent RNA helicase 47A OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0636300 PE=2 SV=1 Length=573 Score = 92.6 bits (228), Expect = 2e-18, Method: Composition-based stats. Identities = 51/358 (14%), Positives = 110/358 (31%), Gaps = 21/358 (6%) Query 143 NVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQN 202 VI++ EL +Q + + ++LG P + + + L + Sbjct 213 AVIVAPSRELGMQIVREVEKILG----PNDKRLVQQLVGGANRSRQEEALKKNKPIIVVG 268 Query 203 CCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQV 262 ++ E S + C D LL + D + E + + Sbjct 269 TPGRISEISAAGKLHTHSCRFLVLDEVDQLLS--FNYREDMHRILEHVGRKSGTSSRDIL 326 Query 263 VKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILC 322 L+ + + + R + + ++ L+ V Sbjct 327 GPLARRSERQTILVSATIPFSVIRAARSWGHDPVLVRAMSVVPLESITVPRPVLSQPDAN 386 Query 323 AERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHS 382 + ++ + L H K + L+R + + I F Sbjct 387 SNSPSNSVNQAAVDSLPPSLEHYYCTSKAQHKVDTLRRCIHALEAQTVIAF--------- 437 Query 383 LLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAE 442 + + L+ V + + G + + + + V++KF+DG +LV ++ Sbjct 438 ----MNNTKPLKDVVFKLEAR-GMKATELHGDLGKLARSTVLKKFKDGEFRVLVTNELSA 492 Query 443 EGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEAL 499 GLD+P C++V+ L T+ GR R + E + + + L Sbjct 493 RGLDVPECDLVINLDLPTDSTHYAHRAGRTGRLGRKGTVVTICEETETFVVRKMRKQL 550 Score = 43.2 bits (100), Expect = 0.008, Method: Composition-based stats. Identities = 27/156 (17%), Positives = 51/156 (33%), Gaps = 21/156 (13%) Query 26 TGAGKTRAAAYVAKRHL------------ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDG 73 TG+GKT A + + G + V++ L Q E ++L Sbjct 177 TGSGKTLAYLLPILSEIGPLKRPTEQDSSDKRSGVEAVIVAPSRELGMQIVREVEKILGP 236 Query 74 --RWTVTTLSGDMGPRAGFGHLARCHDLLIC-TAELLQMALTSPEEEEHVELTVFSLIVV 130 + V L G L + +++ T + + + H +V+ Sbjct 237 NDKRLVQQLVGGANRSRQEEALKKNKPIIVVGTPGRISEISAAGKLHTHSCR----FLVL 292 Query 131 DECHHTHKDTVYNVIMSQYLELKLQRAQPLPQ-VLG 165 DE Y M + LE +++ + +LG Sbjct 293 DEVDQLLS-FNYREDMHRILEHVGRKSGTSSRDILG 327 >sp|P34668|YO12_CAEEL Putative ATP-dependent RNA helicase ZK686.2 OS=Caenorhabditis elegans OX=6239 GN=ZK686.2 PE=3 SV=2 Length=593 Score = 92.9 bits (229), Expect = 2e-18, Method: Composition-based stats. Identities = 61/345 (18%), Positives = 113/345 (33%), Gaps = 35/345 (10%) Query 222 HRRSQDPFGDLLKKLMDQIHD-HLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVY 280 H S+ P L KL I D M +L R+ + E + A L + QR Sbjct 254 HLTSKIPPPIDLSKLRFLIVDEADRMGKLMREEWLDLVEFLCGGMERVACLKDIIRQR-- 311 Query 281 ALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH 340 R +L + V+ L F R + + D LA Sbjct 312 ----RAPQKIVLSATLSKDVEELHLWNLFKPRLFSATAVSVKDITSGIPQVDHVSGRLAL 367 Query 341 LATHGPE----NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTV 396 ++ +PK L + +Q + + R +IF S++ L L++ L Sbjct 368 PSSISHRLVVTDPKFHPLA--VYQQITRNKFNRTLIFVNEVSSSNRLAHVLKE---LCKD 422 Query 397 DIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY 456 + + ++++KF +L+ + V G D+ + V+ Y Sbjct 423 QFEVDYFTAQLFG--------KRRYKMLEKFNKNENRVLICSDVLARGTDLNKVDCVINY 474 Query 457 GLLTNEISMVQARGR-ARADQSVYAFVATEGSREL-------KRELINEALETLMEQAVA 508 L ++ V GR RA Q Y + + L + +E ME+ + Sbjct 475 NLPADDKLFVHRAGRTGRAGQDGYVISVGDKESKRLFVKMLKVTNLWGDTVEEQMEEYIF 534 Query 509 AVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQ 553 D Y + L+ ++ +++ +R F + Sbjct 535 E---KDMDRYSKALESLKATVSSQAKTGGSRQIAKRSGFEAKRKS 576 Score = 60.6 bits (145), Expect = 3e-08, Method: Composition-based stats. Identities = 35/129 (27%), Positives = 55/129 (43%), Gaps = 6/129 (5%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA--KVVVLVNRVHLVTQHGEEFRRMLD 72 L +++ I PTG+GKT + + + V+LV LV Q +EF+R D Sbjct 154 LRPRDVAIAAPTGSGKTICYVLPVLAAVGSKPSKILQAVILVPVQTLVAQIVDEFKRWND 213 Query 73 --GRWTVTTLSGDMGPRAGFGHLARC-HDLLICTAELLQMALTSPEEEEHVELTVFSLIV 129 G V +LSG LA ++++ T L LTS ++L+ ++ Sbjct 214 ESGVAKVVSLSGANDFEKEARQLASDPPNVIVATPARLVQHLTSKIPPP-IDLSKLRFLI 272 Query 130 VDECHHTHK 138 VDE K Sbjct 273 VDEADRMGK 281 >sp|Q66HG7|DDX59_RAT Probable ATP-dependent RNA helicase DDX59 OS=Rattus norvegicus OX=10116 GN=Ddx59 PE=2 SV=1 Length=589 Score = 92.6 bits (228), Expect = 3e-18, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 74/180 (41%), Gaps = 20/180 (11%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K + L +IL Q P ++F + A L +Q+ + G ++ Sbjct 399 KKKKLFEILNDQ--KLFKPPVLVFVDCKLGADLLSEAVQK-------------ITGLSST 443 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 S + +Q +++E+++ +G ++V+T + GLD+ + +VV + + ++ V Sbjct 444 SIHSEKSQVERREILKGLLEGDYEVVVSTGILGRGLDLVNVKLVVNFDMPSSLDEYVHQV 503 Query 470 GR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQ 527 GR R Q+ A S+ L ++ T ++ Q ++ + R QQ Sbjct 504 GRVGRLGQNGTAITFINNNSKRLFWDVAKRVKPT---GSILPPQLLNSPYLHEQKRKEQQ 560 Score = 46.7 bits (109), Expect = 6e-04, Method: Composition-based stats. Identities = 22/82 (27%), Positives = 36/82 (44%), Gaps = 8/82 (10%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK---VVVLVNRVHLVTQ- 62 Q ++I L G++I+ TG+GKT AA++ + + K ++L L Q Sbjct 230 QMQMIPVGLLGRDILASADTGSGKT--AAFLLPVIIRALPEDKTPSALILTPTRELAIQI 287 Query 63 --HGEEFRRMLDGRWTVTTLSG 82 +E R L TV + G Sbjct 288 ERQAKELMRGLPRMKTVLLVGG 309 >sp|Q2FY15|CSHB_STAA8 DEAD-box ATP-dependent RNA helicase CshB OS=Staphylococcus aureus (strain NCTC 8325 / PS 47) OX=93061 GN=cshB PE=3 SV=1 Length=448 Score = 91.8 bits (226), Expect = 3e-18, Method: Composition-based stats. Identities = 35/215 (16%), Positives = 74/215 (34%), Gaps = 24/215 (11%) Query 334 RKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGL 393 K + K+E ++ N IIF +R +A+ L L + Sbjct 214 NKKNIEFYLIPTKGAAKVEKTLNLIDIL----NPYLCIIFCNSRDNANDLARSLNE---- 265 Query 394 QTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV 453 I+ ++ G +T R++++ +++ ++ ++A+ +A G+DI + V Sbjct 266 --AGIKVGMIHG--------GLTPRERKQQMKRIRNLEFQYVIASDLASRGIDIEGVSHV 315 Query 454 VRYGLLTNEISMVQARGRARADQ-SVYAFVATEGSRELKRELINEALETLMEQAVAAVQK 512 + + + + GR A E LI + V Sbjct 316 INFDVPNDIDFFTHRVGRTGRGNYKGVAITLYSPDEEHNISLIED-----RGFVFNTVDI 370 Query 513 MDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQF 547 D + K + +QA + K Q +N+ + Sbjct 371 KDGELKEVKAHNQRQARMRKDDHLTNQVKNKVRSK 405 Score = 50.6 bits (119), Expect = 3e-05, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 43/131 (33%), Gaps = 9/131 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA--KVVVLVNRVHLVTQHG 64 Q +I L+ N+I TG GK+ A + L + + +V+ L Q Sbjct 31 QNRIIPRILKRTNLIGQSQTGTGKSH-AFLLPLMQLIDSEIKEPQAIVVAPTRELAQQLY 89 Query 65 EEFR--RMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 + +V G L+I T + + H+ + Sbjct 90 DAANHLSQFKAGVSVKVFIGGTDIEKDRQRCNAQPQLIIGTP----TRINDLAKTGHLHV 145 Query 123 TVFSLIVVDEC 133 + S +V+DE Sbjct 146 HLASYLVIDEA 156 >sp|A1CNK1|ROK1_ASPCL ATP-dependent RNA helicase rok1 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=rok1 PE=3 SV=1 Length=738 Score = 92.9 bits (229), Expect = 3e-18, Method: Composition-based stats. Identities = 59/334 (18%), Positives = 115/334 (34%), Gaps = 34/334 (10%) Query 232 LLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDAL 291 L+ L + L R + + L L + L +L Sbjct 370 LVNALSTNQTKPMATLPLVRNIVLDEADVLLDPLFRDQTLNIWRACTHPEL-----RASL 424 Query 292 LIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH-LATHGPENPK 350 V+ LA +E V +T+ R ++ L D + H L E K Sbjct 425 WSATMGSNVEDLAKSTIKERKEAVNQTKSYPLLRLVVGLKDSAIPNIEHKLIYAATEQGK 484 Query 351 LEMLEKILQRQFSSSNSPRG----IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA 406 L L ++L +S++ R +IFT+T A +L L+ + + Sbjct 485 LLGLRQLLHPTAASASDVRLRPPFLIFTQTIPRAVALHSELRYDIPTEAGG-------SS 537 Query 407 GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV 466 + + ++ + E+++ F+ G + +LV T + G+D N VV Y + + V Sbjct 538 RIAVLHSDLSDGQRSEIMKNFRKGEIWILVTTDLLARGVDFRGINGVVNYDIPNSAAVYV 597 Query 467 QARGR----ARADQSVYAFVATEG-------------SRELKRELINEALETLMEQAVAA 509 GR R + E S +L+ + ++++ + A+ Sbjct 598 HRVGRTGRAGREGGIAVTYYTKEDIPYVKSIANIIDVSEKLRGKTGEKSIQKWLLDALPD 657 Query 510 VQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQ 543 + K D+ E + +Q+ L R+ + Sbjct 658 LSKKDKKELKKHGVKARQSNLKSDKDDKEHRKTR 691 Score = 42.9 bits (99), Expect = 0.012, Method: Composition-based stats. Identities = 25/157 (16%), Positives = 50/157 (32%), Gaps = 43/157 (27%) Query 20 IIIWLPTGAGKTR------AAAYVAKRHLETVDGAKVVV---LVNRVHLVTQHGEEFRRM 70 +++ PTG+GKT V H ++ + + + + L +Q E R++ Sbjct 240 LLVVAPTGSGKTLSFLIPVINKIVRHHHDQSQEQERGIFSIIVAPTKELASQIVNEGRKL 299 Query 71 LDGRWTVTTLSGD----------------------------------MGPRAGFGHLARC 96 + G L + ++ Sbjct 300 VHGTGVKIALMKKGMRVVEREDEDDDGDDSSSEDGDESSESEHEERPIAKKSKGKAPVTK 359 Query 97 HDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC 133 D+L+ T L AL++ + + L + IV+DE Sbjct 360 SDILVTTPLQLVNALSTNQTKPMATLPLVRNIVLDEA 396 >sp|Q9FNM7|RH26_ARATH DEAD-box ATP-dependent RNA helicase 26 OS=Arabidopsis thaliana OX=3702 GN=RH26 PE=1 SV=2 Length=850 Score = 92.9 bits (229), Expect = 3e-18, Method: Composition-based stats. Identities = 49/327 (15%), Positives = 106/327 (32%), Gaps = 37/327 (11%) Query 151 ELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEH 210 R P ++ L P AS+ N +L+ ++ ++ + + Sbjct 447 SPPASRDSRQPPIIVLVVCPTRELASQAAAEANTLLKYHPSIGVQVVIGGTKLPTEQRRM 506 Query 211 SQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAA 270 PC+ R +D + +++ L + + + E Sbjct 507 QTNPCQILVATPGRLKDHIENTSG--FATRLMGVKVLVLDE--ADHLLDMGFRRDIERII 562 Query 271 LAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLAL 330 A ++++ + + + + VR + +A +D V + ++ Sbjct 563 AAVPKQRQTFLF-------SATVPEEVRQICHVALKRDHEFINCVQEGSGETHQKVTQMY 615 Query 331 FDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQ 390 +A L H +L +L+ + + + IIF T L+ L Q Sbjct 616 M------IASLDRH------FSLLHVLLKEHIADNVDYKVIIFC-TTAMVTRLVADLLSQ 662 Query 391 QGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHC 450 L +I + Q + V +F+ +LV + V+ G+D P Sbjct 663 LSLNVREIH-------------SRKPQSYRTRVSDEFRKSKAIILVTSDVSARGVDYPDV 709 Query 451 NVVVRYGLLTNEISMVQARGRARADQS 477 ++VV+ GL ++ + GR Sbjct 710 SLVVQMGLPSDREQYIHRLGRTGRKGK 736 Score = 56.3 bits (134), Expect = 8e-07, Method: Composition-based stats. Identities = 25/134 (19%), Positives = 51/134 (38%), Gaps = 15/134 (11%) Query 15 LEGKNIIIWLPTGAGKTRAAAYV--AKRHLETVDGAK--------VVVLVNRVHLVTQHG 64 L+GK+++ TG GKT A + + +++ ++ V+V+ L +Q Sbjct 417 LQGKDVLAKAKTGTGKT-VAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQAA 475 Query 65 EEFRRMLDGRWTVT---TLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVE 121 E +L ++ + G P +L+ T L+ + + Sbjct 476 AEANTLLKYHPSIGVQVVIGGTKLPTEQRRMQTNPCQILVATPGRLKDHIENTSGFA-TR 534 Query 122 LTVFSLIVVDECHH 135 L ++V+DE H Sbjct 535 LMGVKVLVLDEADH 548 >sp|A1D1E3|ROK1_NEOFI ATP-dependent RNA helicase rok1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=rok1 PE=3 SV=1 Length=738 Score = 92.9 bits (229), Expect = 3e-18, Method: Composition-based stats. Identities = 50/253 (20%), Positives = 92/253 (36%), Gaps = 18/253 (7%) Query 232 LLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDAL 291 L+ L + L R + + +L L + L +L Sbjct 371 LVNALSANRTKPMATLPLVRNIVLDEADVLLDELFRDQTLDIWRACTHPEL-----RASL 425 Query 292 LIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH-LATHGPENPK 350 ++ LA ++ +T R ++ L D + H L E K Sbjct 426 WSATMGSNIEDLAKSTIKERKQAYDRTNSYPLLRLVVGLKDSAIPNIEHKLVYAATEQGK 485 Query 351 LEMLEKILQRQFSSSNSPRG----IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA 406 L L ++L +S++ R +IFT+T A +L L+ DI A+ + Sbjct 486 LLGLRQLLHPAAASASDVRLRPPFLIFTQTIPRAIALHSELR-------YDIPAEAGGSS 538 Query 407 GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV 466 + + ++ + E+++ F+ G + +LV T + G+D N VV Y + + V Sbjct 539 RIAVLHSDLSDGQRSEIMKNFRKGEIWILVTTDLLARGVDFRGINGVVNYDIPNSAAVYV 598 Query 467 QARGR-ARADQSV 478 GR RA + Sbjct 599 HRVGRTGRAGREG 611 Score = 47.5 bits (111), Expect = 4e-04, Method: Composition-based stats. Identities = 28/153 (18%), Positives = 47/153 (31%), Gaps = 39/153 (25%) Query 20 IIIWLPTGAGKTR-----AAAYVAKRHLETVDGAKV--VVLVNRVHLVTQHGEEFRR--M 70 +++ PTG+GKT + + H E + + VV+ L +Q E R+ Sbjct 245 LLVVAPTGSGKTLSFLIPVINKIVRHHHEQEEERGIFSVVVAPTKELASQIVNEGRKLVH 304 Query 71 LDGRWTVTTLSG------------------------------DMGPRAGFGHLARCHDLL 100 G G + D+L Sbjct 305 GTGVKITLMKKGMRVVDREDDDDENSHSEDSEEGSESEQDEPSTTRKKKGKAPVTKSDIL 364 Query 101 ICTAELLQMALTSPEEEEHVELTVFSLIVVDEC 133 + T LL AL++ + L + IV+DE Sbjct 365 VTTPLLLVNALSANRTKPMATLPLVRNIVLDEA 397 >sp|Q6CIR0|DBP10_KLULA ATP-dependent RNA helicase DBP10 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=DBP10 PE=3 SV=1 Length=973 Score = 92.9 bits (229), Expect = 3e-18, Method: Composition-based stats. Identities = 40/186 (22%), Positives = 71/186 (38%), Gaps = 21/186 (11%) Query 363 SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE 422 + I+F TR + L+ L+ + + Q +++ Sbjct 414 EMPSEKATIVFVPTRHHVEYVTQLLKN----------CGYLVSYIYGA----LNQHARKQ 459 Query 423 VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF 481 + F+ G ++LV T VA G+DIP V+ Y L + + GR ARA +AF Sbjct 460 QLYNFRAGLTSILVVTDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAF 519 Query 482 VATEGSR-----ELKRELINEALETLM-EQAVAAVQKMDQAEYQAKIRDLQQAALTKRAA 535 + +L+ L + L T M E + ++K ++E D + + T+ Sbjct 520 SIVSENELPYLLDLELFLGKKILLTPMYESSCQILRKKAESEGNNNFTDPKVSYTTRMVL 579 Query 536 QAAQRE 541 A R Sbjct 580 GACPRS 585 Score = 55.6 bits (132), Expect = 1e-06, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 46/125 (37%), Gaps = 8/125 (6%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA---KVVVLVNRVHLVTQHGEEFRRML 71 L+ ++I+ TG+GKT A L+T + V+L L Q F+ Sbjct 161 LQKRDIVGMARTGSGKTAAFVLPMIEKLKTHSAKIGVRAVILSPSRELAIQTHRVFKEFS 220 Query 72 DGRW-TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV 130 G L+G FG + D++I T + E +++L +V Sbjct 221 KGSDLRSILLTGGDSLEDQFGMMMGNPDVVIATPGRFLH----LKVEMNLDLKSVEYVVF 276 Query 131 DECHH 135 DE Sbjct 277 DEADR 281 >sp|Q38F76|IF4A_TRYB2 Probable eukaryotic initiation factor 4A OS=Trypanosoma brucei brucei (strain 927/4 GUTat10.1) OX=185431 GN=Tb09.160.3270 PE=3 SV=1 Length=404 Score = 91.0 bits (224), Expect = 4e-18, Method: Composition-based stats. Identities = 30/153 (20%), Positives = 64/153 (42%), Gaps = 18/153 (12%) Query 315 VTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFT 374 +TK + R L+ + E KL+ L + + + + + +IF Sbjct 220 LTKKFMRDPTRILVKRESLTLEGIKQFFIAVEEEHKLDTLMDL----YETVSIAQSVIFA 275 Query 375 RTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNL 434 TR+ L L S + M+++++++V+ F++G+ + Sbjct 276 NTRRKVDWLASQLNSSN--------------HTVSCMHSEMSKQEREKVMGTFRNGSSRV 321 Query 435 LVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 LV T + G+D+ H N+V+ + L TN+ + + Sbjct 322 LVTTDLVARGIDVHHVNIVINFDLPTNKENYLH 354 Score = 44.8 bits (104), Expect = 0.002, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 45/133 (34%), Gaps = 10/133 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT-RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q I+P G +II +G GKT + + +R + + +VL L Q E Sbjct 53 QQRAIVPFTRGGDIIAQAQSGTGKTGAFSIGLLQRLDFRHNVLQGLVLSPTRELAMQTAE 112 Query 66 EFRRMLDG-----RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 R+ + T G + + L + + T + + + Sbjct 113 VITRIGEFLAEGSSSFCATFVGGTRVQDDYRKLQSGTIVAVGTPGRVVDV----TKRGAM 168 Query 121 ELTVFSLIVVDEC 133 ++V+DE Sbjct 169 RTESLRVLVLDEA 181 >sp|Q0CI35|MAK5_ASPTN ATP-dependent RNA helicase mak5 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=mak5 PE=3 SV=2 Length=774 Score = 92.6 bits (228), Expect = 4e-18, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 49/120 (41%), Gaps = 18/120 (15%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 R ++FT + + L +LQ Q + + M Q+ + +++F Sbjct 505 RTLVFTNSISAVRRLTQFLQALQLPAL--------------ALHSSMAQKARLRSVERFS 550 Query 429 DGTLN---LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVAT 484 T + +LVAT VA GLDI + V+ Y + V GR ARA S + + Sbjct 551 SPTADPSTILVATDVAARGLDIKGIDFVIHYHAPRTADTYVHRSGRTARAGASGKSVIIC 610 Score = 46.7 bits (109), Expect = 7e-04, Method: Composition-based stats. Identities = 30/146 (21%), Positives = 51/146 (35%), Gaps = 19/146 (13%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHL--------ETVDGAK-----VVVL 53 Q I P L+G +++ TG+GKT A + + D K ++L Sbjct 229 QKSCIPPILDGHDVVGKASTGSGKTLAFGIPILEYYLEKKRRETKNKDDKKETSPIALIL 288 Query 54 VNRVHLVTQ---HGEEFRRMLDGRW-TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQM 109 L Q H E G + L+G + + L D++I T + Sbjct 289 SPTRELAHQLVKHIGEVITHAPGVNARIALLTGGLSVQKQ-QRLLNGADIVIGTPGRVWE 347 Query 110 ALTSPEEEEHVELTVFSLIVVDECHH 135 L+ + ++ +VVDE Sbjct 348 VLSGGQGL-ISKMKEIKYLVVDEADR 372 >sp|Q6BME5|SUB2_DEBHA ATP-dependent RNA helicase SUB2 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=SUB2 PE=3 SV=2 Length=435 Score = 91.4 bits (225), Expect = 4e-18, Method: Composition-based stats. Identities = 53/345 (15%), Positives = 109/345 (32%), Gaps = 26/345 (8%) Query 164 LGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHR 223 LG TA +LD + L +N + ++ + Sbjct 99 LGKTAVFVLSTLQQLDPVPGEISTLVICHTRELAYQIRNEYARFSKYMPDVKTEVFY--- 155 Query 224 RSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALH 283 P L+KL ++ + + + E+ + + + + ++ + A+ Sbjct 156 -GGTPITRDLEKLKNKDTCPHIVVATPGRLHALVTEKSIRLNNIKSFVIDECDKVLEAVD 214 Query 284 LRRYNDALLIH-DTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLA 342 +RR + + + V +A R K E + + L Sbjct 215 MRRDVQDIFRNTPHQKQVMMFSATLSQEIRPVCKKFMQNPLEIYVDDEAKLTLHGLQQYY 274 Query 343 THGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL 402 E K L +L + IIF R+ Q A+ L L Sbjct 275 IKLDEKEKNRKLSDLLDSL----EFNQVIIFVRSTQRANELNKLLCSSNFPSI------- 323 Query 403 LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE 462 + + + Q ++ E + F++ + V+T V G+DI N+ + Y L Sbjct 324 -------AVHSGLPQEERIERYKSFKEFNKRICVSTDVFGRGIDIERINLAINYDLPNEA 376 Query 463 ISMVQARGRARADQS---VYAFVATEGSRELKRELINEALETLME 504 + GRA + + V+T+ E+ ++ + + E Sbjct 377 DQYLHRVGRAGRFGTKGLAVSLVSTKDDEEVLEKIQSRFDVKITE 421 Score = 42.9 bits (99), Expect = 0.009, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 46/135 (34%), Gaps = 14/135 (10%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQ--- 62 Q I ++ G +++ +G GKT + L+ V G +V+ + L Q Sbjct 78 QQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEISTLVICHTRELAYQIRN 137 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHD----LLICTAELLQMALTSPEEEE 118 F + + T G P + D +++ T L +T Sbjct 138 EYARFSKYMPDVKTEVFYGG--TPITRDLEKLKNKDTCPHIVVATPGRLHALVTEKS--- 192 Query 119 HVELTVFSLIVVDEC 133 + L V+DEC Sbjct 193 -IRLNNIKSFVIDEC 206 >sp|Q86IZ9|DDX52_DICDI Probable ATP-dependent RNA helicase ddx52 OS=Dictyostelium discoideum OX=44689 GN=ddx52 PE=3 SV=1 Length=668 Score = 92.6 bits (228), Expect = 4e-18, Method: Composition-based stats. Identities = 32/146 (22%), Positives = 59/146 (40%), Gaps = 19/146 (13%) Query 339 AHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI 398 L G E KL + +++Q+ P +IFT++++ AH L L Sbjct 416 QKLIYVGKEEGKLLAVRQLIQKGLE----PPILIFTQSKERAHDLFQEL----------- 460 Query 399 RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL 458 + G + TQ + +++KF+ G + +L+ T + G+D N V+ + Sbjct 461 ---IFDGINVDVIHSERTQFQRDTIVKKFRMGKIWVLICTELMARGMDFKGVNFVINFDF 517 Query 459 LTNEISMVQARGR-ARADQSVYAFVA 483 S + GR RA + A+ Sbjct 518 PHTLASYIHRIGRTGRAGRPGVAYTL 543 Score = 62.9 bits (151), Expect = 6e-09, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 56/130 (43%), Gaps = 7/130 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGA-KVVVLVNRVHLVTQHG 64 Q +VI L+ + ++ PTG+GKT + + + + E + V++ L Q Sbjct 226 QMQVIPILLKEREVVAIAPTGSGKTASFSIPILQALYEPKKEGFRSVIIAPTRELAQQIY 285 Query 65 EEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELT 123 FR + G + + LS ++ ++ +L + +D+LI T L + + L Sbjct 286 RNFRLLSKGKPFRICVLSKNLHNQSTNENLIKNYDILITTPLRLVYLIKENL----LSLN 341 Query 124 VFSLIVVDEC 133 +V DE Sbjct 342 KVEYLVFDEA 351 >sp|Q5XH91|DDX1_XENTR ATP-dependent RNA helicase DDX1 OS=Xenopus tropicalis OX=8364 GN=ddx1 PE=2 SV=1 Length=740 Score = 92.6 bits (228), Expect = 4e-18, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 54/141 (38%), Gaps = 10/141 (7%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K E + ++ + IIF RT+ ++ + QQ G + Sbjct 493 KGEYTVRAIKEH----KMDQAIIFCRTKLDCDNMEQYFIQQGGGPDKKGHQFSCV----- 543 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + ++++ +++F+ + L+ T VA G+DI V+ L + + V Sbjct 544 CLHSDRKPQERKHNLERFKKCEVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRI 603 Query 470 GR-ARADQSVYAFVATEGSRE 489 GR RA++ A +E Sbjct 604 GRVGRAERMGLAISLVAAEKE 624 >sp|A2VD92|DDX1_XENLA ATP-dependent RNA helicase DDX1 OS=Xenopus laevis OX=8355 GN=ddx1 PE=2 SV=1 Length=740 Score = 92.6 bits (228), Expect = 4e-18, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 54/141 (38%), Gaps = 10/141 (7%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K E + + ++ + IIF RT+ ++ + QQ G + Sbjct 493 KGEYIVRAIKEH----KMDQAIIFCRTKLDCDNMEQYFIQQGGGPDKKGHQFSCV----- 543 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + +++ +++F+ + L+ T VA G+DI V+ L + + V Sbjct 544 CLHSDRKPPERKHNLERFKKCEVRFLICTDVAARGIDIRGVPYVINVTLPDEKQNYVHRI 603 Query 470 GR-ARADQSVYAFVATEGSRE 489 GR RA++ A +E Sbjct 604 GRVGRAERMGLAISLVASEKE 624 >sp|Q3EBD3|RH41_ARATH DEAD-box ATP-dependent RNA helicase 41 OS=Arabidopsis thaliana OX=3702 GN=RH41 PE=2 SV=1 Length=505 Score = 91.8 bits (226), Expect = 4e-18, Method: Composition-based stats. Identities = 57/341 (17%), Positives = 115/341 (34%), Gaps = 57/341 (17%) Query 223 RRSQDPFGDLL---KKLMDQIHDHLEMPELSRKF------GTQMYEQQVVKLSEAAALAG 273 + ++P +L ++L Q+ D +M F G Q+ ++ + L Sbjct 182 DQRRNPLAMVLAPTRELCVQVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELII 241 Query 274 LQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD 333 RV L + L + +D + + R+ V + + + LF Sbjct 242 GTPGRVVD--LLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQI-FQALSQPQVLLFSA 298 Query 334 R------------KNELAHLATHGPENP---------------KLEMLEKILQRQFSSSN 366 E+ ++ P P K + L IL+ Q + Sbjct 299 TISREVEKVGGSLAKEIILVSIGNPNKPNKAVNQLAIWVDAKQKKQKLFDILRSQ--NHF 356 Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 P +++ +R A L + ++ G S +++++V+ Sbjct 357 KPPAVVYVSSRVGADLLANAI-------------TVVTGVKALSIHGEKPMKERRDVMGS 403 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA-RADQSVYAF-VAT 484 F G + +LV+T V G+D+ V+ + + + + GRA R + A Sbjct 404 FLGGEVPVLVSTGVLGRGVDLLVVRQVIVFDMPSTIKEYIHVIGRASRMGEKGTAIVFVN 463 Query 485 EGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDL 525 E R L +L+ AL++ + + E K R + Sbjct 464 EDDRNLFPDLV-AALKSSGAAIPKELINLTSREMHNKKRRV 503 Score = 57.9 bits (138), Expect = 2e-07, Method: Composition-based stats. Identities = 38/197 (19%), Positives = 73/197 (37%), Gaps = 27/197 (14%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYV----------AKRHLETVDGAKVVVLVNR 56 Q + I AL GK+++ TG+GKT A+ V ++ + +VL Sbjct 137 QMQAIPAALTGKSLLASADTGSGKT-ASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPT 195 Query 57 VHLVTQ---HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTS 113 L Q + + L + + M + + +L+I T + L+ Sbjct 196 RELCVQVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQ--QGVELIIGTPGRVVDLLSK 253 Query 114 PEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTG 173 +EL V+DE + + +M + +A PQVL +A+ + Sbjct 254 HT----IELDNIMTFVLDEVDCMLQRGFRDQVMQIF------QALSQPQVLLFSAT-ISR 302 Query 174 GASKLDGAINHVLQLCA 190 K+ G++ + L + Sbjct 303 EVEKVGGSLAKEIILVS 319 >sp|Q751D1|DBP6_EREGS ATP-dependent RNA helicase DBP6 OS=Eremothecium gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=DBP6 PE=3 SV=1 Length=607 Score = 92.2 bits (227), Expect = 4e-18, Method: Composition-based stats. Identities = 36/181 (20%), Positives = 77/181 (43%), Gaps = 17/181 (9%) Query 364 SSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEV 423 S+ S R ++F ++ +++ L L G + + ++ ++ T R E Sbjct 428 STESLRILVFVKSNEASIRLAALLTAMVGNGLSAVSTTV---GSINNNNSKATNRKLIEA 484 Query 424 IQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYA-- 480 G ++LV+T + GLDI + V+ Y L + V GR ARA+ S A Sbjct 485 FAAGASGHCSILVSTDLMSRGLDISGISHVINYDLPISSQQYVHRCGRTARANTSGTAVN 544 Query 481 FVATEGSRELKRELINEAL-----------ETLMEQAVAAVQKMDQAEYQAKIRDLQQAA 529 + +G + ++ I+ + + + + ++ + D A Y+ + +L+++ Sbjct 545 LLVGKGEQNFWKDHIDSDISRAPDGSHLFFDEEQREQLVSLSEEDTATYKKCLEELKKSV 604 Query 530 L 530 L Sbjct 605 L 605 Score = 66.4 bits (160), Expect = 5e-10, Method: Composition-based stats. Identities = 32/120 (27%), Positives = 48/120 (40%), Gaps = 8/120 (7%) Query 20 IIIWLPTGAGKTRAAAYVAKRHL--ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV 77 I++ TG+GKT A A + L TV+ + V+LV LV Q + + + G V Sbjct 217 ILVNASTGSGKTLAYAMLLIHILSRRTVNKLRAVILVPTKLLVHQVYDTVQALAKGSSVV 276 Query 78 TTLSG-DMGPRAGFGHLA-RCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH 135 +S D + L + D+LI T L L L +V+DE Sbjct 277 VAVSKMDTSLKEESAKLKAQEPDVLIITPGRLVDHLNMQT----FSLKNLKFLVLDEADR 332 >sp|Q6BRN4|IF4A_DEBHA ATP-dependent RNA helicase eIF4A OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=TIF1 PE=3 SV=1 Length=397 Score = 90.6 bits (223), Expect = 5e-18, Method: Composition-based stats. Identities = 43/305 (14%), Positives = 99/305 (32%), Gaps = 30/305 (10%) Query 165 GLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYN--LCH 222 G TA+ ++D L + QN + + Sbjct 72 GKTATFTISALQRIDENEKSTQALILAPTRELALQIQNVITHIGLYLNVTVHASIGGTSM 131 Query 223 RRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYAL 282 + + F ++ ++ +M E R F T + ++ ++ +G +EQ Sbjct 132 KDDIEAFKSGVQIVVGTPGRVFDMIE-RRFFKTDKVKMFILDEADEMLSSGFKEQIYNIF 190 Query 283 HLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLA 342 L +++ D L F + + + F + + Sbjct 191 RLLPETTQVVLLSATMPQDVLEVTTKFMNNPVRILVKKDELTLEGIKQFYINVEQEDY-- 248 Query 343 THGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL 402 K + L + + S + + +IF TR L L+ + Sbjct 249 -------KFDCLCDL----YDSISVTQAVIFCNTRSKVEFLTTKLKGEN----------- 286 Query 403 LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE 462 S+ + Q D+ ++ +F+ G+ +L++T + G+D+ ++V+ Y L N+ Sbjct 287 ---FTVSAIHADLPQADRDTIMNEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANK 343 Query 463 ISMVQ 467 + + Sbjct 344 ENYIH 348 Score = 54.0 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 43/129 (33%), Gaps = 6/129 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q I+P EG++++ +G GKT +R E + ++L L Q Sbjct 50 QQRAILPITEGRDVLAQAQSGTGKTATFTISALQRIDENEKSTQALILAPTRELALQIQN 109 Query 66 EFRRM-LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 + L TV G + +++ T + + E + Sbjct 110 VITHIGLYLNVTVHASIGGTSMKDDIEAFKSGVQIVVGTPGRVFDMI----ERRFFKTDK 165 Query 125 FSLIVVDEC 133 + ++DE Sbjct 166 VKMFILDEA 174 >sp|Q4WRH5|ROK1_ASPFU ATP-dependent RNA helicase rok1 OS=Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293) OX=330879 GN=rok1 PE=3 SV=1 Length=739 Score = 92.2 bits (227), Expect = 5e-18, Method: Composition-based stats. Identities = 59/334 (18%), Positives = 116/334 (35%), Gaps = 34/334 (10%) Query 232 LLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDAL 291 L+ L + L R + + +L L + L +L Sbjct 372 LVNALSANRTKPMATLPLVRNIVLDEADVLLDELFREQTLDIWRACTHPEL-----RASL 426 Query 292 LIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH-LATHGPENPK 350 ++ LA ++ +T+ R ++ L D + H L E K Sbjct 427 WSATMGSNIEDLAKSTIKERKQAYDQTKSYPLLRLVVGLKDSAIPNIEHKLVYAATEQGK 486 Query 351 LEMLEKILQRQFSSSNSPRG----IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA 406 L L ++L +S + R +IFT+T A +L L+ DI A+ + Sbjct 487 LLGLRQLLHPAAASVSDVRLRPPFLIFTQTIPRAIALHSELR-------YDIPAEAGGSS 539 Query 407 GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV 466 + + ++ + E+++ F+ G + +LV T + G+D N VV Y + + V Sbjct 540 RIAVLHSDLSDGQRSEIMKNFRKGEIWILVTTDLLARGVDFRGINGVVNYDIPNSAAVYV 599 Query 467 QARGR----ARADQSVYAFVATEG-------------SRELKRELINEALETLMEQAVAA 509 GR R + E S +L+ + ++++ + A+ Sbjct 600 HRVGRTGRAGREGGIAVTYYTKEDIPYVKSIANIIDVSEKLRGKDGEKSIQKWLLDALPD 659 Query 510 VQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQ 543 + K D+ E + +Q+ L R + Sbjct 660 LSKKDKKELKKHGVKARQSTLKSVKDDKEHRRTR 693 Score = 47.5 bits (111), Expect = 4e-04, Method: Composition-based stats. Identities = 27/153 (18%), Positives = 46/153 (30%), Gaps = 39/153 (25%) Query 20 IIIWLPTGAGKTR-----AAAYVAKRHLETVDGAKV--VVLVNRVHLVTQHGEEFRR--M 70 +++ PTG+GKT + + H E + V++ L +Q E R+ Sbjct 246 LLVVAPTGSGKTLSFLIPVINKIVRHHHEQEKERGIFSVIVAPTKELASQIVNEGRKLVH 305 Query 71 LDGRWTVTTLSG------------------------------DMGPRAGFGHLARCHDLL 100 G G + D+L Sbjct 306 GTGVKITLMKKGMRVVDREDDDDENSHSEDSEEGSDSEQDEPSTTRKKKGKAPITKSDIL 365 Query 101 ICTAELLQMALTSPEEEEHVELTVFSLIVVDEC 133 + T LL AL++ + L + IV+DE Sbjct 366 VTTPLLLVNALSANRTKPMATLPLVRNIVLDEA 398 >sp|O13792|SUB2_SCHPO ATP-dependent RNA helicase uap56 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=uap56 PE=1 SV=3 Length=434 Score = 90.6 bits (223), Expect = 5e-18, Method: Composition-based stats. Identities = 43/315 (14%), Positives = 100/315 (32%), Gaps = 24/315 (8%) Query 182 INHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPF--GDLLKKLMDQ 239 ++ + Q+ ++ + + + + F G +K+ M+ Sbjct 107 LSTLQQIEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEA 166 Query 240 IHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRA 299 D + P + ++ K+ + ++ L + I + RA Sbjct 167 FKDKSKSPHIVVATPGRLNALVREKILKVNSVKHFVLDE-CDKLLESVDMRRDIQEVFRA 225 Query 300 VDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPE--NPKLEML--E 355 + F ++ ++ + + ++ L HG + KLE Sbjct 226 TPPQKQVMMF--SATLSNEIRPICKKFMQNPLEIYVDDETKLTLHGLQQHYVKLEEKAKN 283 Query 356 KILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHM 415 + + S + +IF ++ A+ L L++ + Sbjct 284 RKINDLLDSLEFNQVVIFVKSVSRANELDRLLRECNFPSI--------------CIHGGL 329 Query 416 TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARA- 474 Q ++ + + F+D + VAT V G+DI N+V+ Y + + S + GRA Sbjct 330 PQEERIKRYKAFKDFDKRICVATDVFGRGIDIERVNIVINYDMPDSPDSYLHRVGRAGRF 389 Query 475 DQSVYAFVATEGSRE 489 A + + Sbjct 390 GTKGLAITFSSSEED 404 Score = 45.6 bits (106), Expect = 0.001, Method: Composition-based stats. Identities = 37/188 (20%), Positives = 72/188 (38%), Gaps = 14/188 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQ--- 62 Q I ++ G +++ +G GKT + +E VDG V+VL + L Q Sbjct 78 QQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIEPVDGEVSVLVLCHTRELAFQIKN 137 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPR--AGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 F + L T G + F ++ +++ T L AL E+ + Sbjct 138 EYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHIVVATPGRL-NAL---VREKIL 193 Query 121 ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG 180 ++ V+DEC + +V M + ++ + P QV+ +A+ Sbjct 194 KVNSVKHFVLDECDKLLE----SVDMRRDIQEVFRATPPQKQVMMFSATLSNEIRPICKK 249 Query 181 AINHVLQL 188 + + L++ Sbjct 250 FMQNPLEI 257 >sp|A5E3W5|SUB2_LODEL ATP-dependent RNA helicase SUB2 OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) OX=379508 GN=SUB2 PE=3 SV=1 Length=433 Score = 90.6 bits (223), Expect = 5e-18, Method: Composition-based stats. Identities = 49/333 (15%), Positives = 113/333 (34%), Gaps = 27/333 (8%) Query 180 GAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQ 239 + + + + T I + Q++ + +Y + G +K+ +++ Sbjct 106 STLQQLDPVAGEISTLVICHTRELAYQIRNEYAR-FSKYMPDVKTEVFYGGTPVKRDIEK 164 Query 240 IHDHLEMPELSRKFGTQMY---EQQVVKLSEAAALAGLQEQRVYA-LHLRRYNDALLIH- 294 + + P + +++ +++ ++L+ + + +V L +RR + Sbjct 165 LKNKDTCPHIVVATPGRLHALVQEKAIRLNNVKSFVIDECDKVLESLDMRRDVQDIFRAT 224 Query 295 DTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEML 354 + V +A R K E + + L E K L Sbjct 225 PHQKQVMMFSATLSQDIRPVCKKFMQNPLEIYVDDEAKLTLHGLQQYYIKLEEKEKNRKL 284 Query 355 EKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH 414 +L + IIF ++ Q A+ L L + + Sbjct 285 SDLLDSL----EFNQVIIFVKSTQRANELNKLLCACNFPSI--------------AVHSG 326 Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARA 474 + Q ++ E + F++ + V+T V G+DI N+ + Y L + GRA Sbjct 327 LPQEERIERYKSFKEFNKRICVSTDVFGRGIDIERINLAINYDLPNEADQYLHRVGRAGR 386 Query 475 DQS---VYAFVATEGSRELKRELINEALETLME 504 + +FV+T+ E+ ++ + + E Sbjct 387 FGTKGLGISFVSTKEDEEVLEKIQSRFDVKITE 419 Score = 40.2 bits (92), Expect = 0.059, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 48/135 (36%), Gaps = 14/135 (10%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQ--- 62 Q I ++ G +++ +G GKT + L+ V G +V+ + L Q Sbjct 76 QQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPVAGEISTLVICHTRELAYQIRN 135 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHD----LLICTAELLQMALTSPEEEE 118 F + + T G P + D +++ T L + +E+ Sbjct 136 EYARFSKYMPDVKTEVFYGG--TPVKRDIEKLKNKDTCPHIVVATPGRLH----ALVQEK 189 Query 119 HVELTVFSLIVVDEC 133 + L V+DEC Sbjct 190 AIRLNNVKSFVIDEC 204 >sp|Q6P9R1|DDX51_MOUSE ATP-dependent RNA helicase DDX51 OS=Mus musculus OX=10090 GN=Ddx51 PE=1 SV=1 Length=639 Score = 91.8 bits (226), Expect = 5e-18, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 76/175 (43%), Gaps = 17/175 (10%) Query 368 PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF 427 R + FT +R+++H L L Q G+ + ++ G +++++++F Sbjct 478 SRALCFTNSRENSHRLYLLAQAFGGVSVAEFSSRYGPG-------------QRKKILKQF 524 Query 428 QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF--VAT 484 + G + LL++T G+D+ +V+ Y + V GR ARA ++ AF + Sbjct 525 EQGKIQLLISTDATARGIDVQGVELVINYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLK 584 Query 485 EGSRELKRELINEALETLMEQAVA-AVQKMDQAEYQAKIRDLQQAALTKRAAQAA 538 R+ + + + L + + + A Y+ + L++ ++ +AA Sbjct 585 VQERKFLQMVSEAGVPELTHHEIPRKLLQPLVARYETALSQLEKTVKEEQKLKAA 639 Score = 52.1 bits (123), Expect = 1e-05, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 74/232 (32%), Gaps = 25/232 (11%) Query 20 IIIWLPTGAGKTRAAAY-VAKRHLETVD-GAKVVVLVNRVHLVTQHGEEFRRMLD-GRWT 76 + + PTG+GKT A V + L V + +V++ L Q + F D Sbjct 224 LCVSAPTGSGKTLAFVIPVVQALLHRVVCHIRALVVLPTKELAQQVSKVFNIYTDTTPLR 283 Query 77 VTTLSGDMGPRAGFGHLARCH--------DLLICTAELLQMALTSPEEEEHVELTVFSLI 128 V ++G L + D+++ T L + L + Sbjct 284 VALVTGQKSLAKEQESLVQKTADGFRCLADIVVATPGRLVDHIDQTPG---FSLQQLRFL 340 Query 129 VVDECHHTHKDTVY-----NVIMSQYLELKLQRAQPLPQVL---GLTASPGTGGASKLDG 180 ++DE D+++ V+ + + + L Q LTA+ L Sbjct 341 IIDEADRMI-DSMHQSWLPRVVAAAFYSEGPTGSCALLQRTQPQALTAASTCVPQMPLQK 399 Query 181 AINHVLQLC--ANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFG 230 + L + P+ +L + S + + + + P G Sbjct 400 LLFSATLTQDPEKLQRLGLYQPRLFSTRLGQQSPKDTAEVDENSGKYTFPVG 451 >sp|A3LST5|SUB2_PICST ATP-dependent RNA helicase SUB2 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) OX=322104 GN=SUB2 PE=3 SV=1 Length=433 Score = 90.6 bits (223), Expect = 5e-18, Method: Composition-based stats. Identities = 38/217 (18%), Positives = 77/217 (35%), Gaps = 23/217 (11%) Query 310 YHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPE--NPKLEMLE--KILQRQFSSS 365 +++ ++ + + ++ A L HG + KLE E + L S Sbjct 232 MFSATLSQEIRPVCKKFMQNPLEIYVDDEAKLTLHGLQQYYIKLEEKEKNRKLSDLLDSL 291 Query 366 NSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQ 425 + IIF ++ Q A+ L L + + + Q ++ E + Sbjct 292 EFNQVIIFVKSTQRANELNKLLCSCNFPSI--------------AVHSGLPQEERIERYR 337 Query 426 KFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFVATE 485 F++ + V+T V G+DI N+ + Y L + GRA + ++ Sbjct 338 SFKEFNKRICVSTDVFGRGIDIERINLAINYDLPNEADQYLHRVGRAGRFGTKGLAISLV 397 Query 486 GSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKI 522 GS+E + E LE + + + + + Sbjct 398 GSKEDE-----EVLEKIQSRFDVKITEFPEEGVDPST 429 Score = 43.6 bits (101), Expect = 0.005, Method: Composition-based stats. Identities = 31/190 (16%), Positives = 63/190 (33%), Gaps = 18/190 (9%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQ--- 62 Q I ++ G +++ +G GKT + L+ V G +V+ + L Q Sbjct 76 QQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEISTLVICHTRELAYQIRN 135 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHD----LLICTAELLQMALTSPEEEE 118 F + + T G P + D +++ T L AL + + Sbjct 136 EYARFSKYMPDVKTEVFYGG--TPIKRDIEKLKSKDTCPHIVVATPGRL-HALVNEKA-- 190 Query 119 HVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKL 178 + L+ V+DEC + + + QV+ +A+ Sbjct 191 -IRLSNVKSFVIDECDKVLESIDMRRDVQDIFRATPHQK----QVMMFSATLSQEIRPVC 245 Query 179 DGAINHVLQL 188 + + L++ Sbjct 246 KKFMQNPLEI 255 >sp|A5DGM4|SPB4_PICGU ATP-dependent rRNA helicase SPB4 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=SPB4 PE=3 SV=2 Length=601 Score = 91.8 bits (226), Expect = 6e-18, Method: Composition-based stats. Identities = 37/188 (20%), Positives = 79/188 (42%), Gaps = 17/188 (9%) Query 352 EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ 411 E +L S+ + I++ T S Q+ L+ V++ +S Sbjct 252 ETKIAVLINMLSTLQYKKCIVYFPTCASVKYFYSVFQKLHPLEDVNL----------TSI 301 Query 412 STHMTQRDQQEVIQKFQDGTL----NLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 + + + + + KF +G + ++L+ T VA G+DIP ++V++ T+ + Sbjct 302 HGQLLAKARLKAMNKFTEGDVRTSKHVLLTTDVAARGIDIPEVDLVIQLDPPTDPDMFLH 361 Query 468 ARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQ 526 GR RA++ A V + L+ + ++ ++ + + A Y+A ++L+ Sbjct 362 RCGRTGRANKVGRAIVMLNNN-ALESDYVDFMEVKGLKMSEVESPDVIDA-YKAFSKNLR 419 Query 527 QAALTKRA 534 L RA Sbjct 420 NLMLQDRA 427 Score = 39.4 bits (90), Expect = 0.10, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 48/133 (36%), Gaps = 19/133 (14%) Query 18 KNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAK------VVVLVNRVHLVTQHGEEFRRM 70 K++++ TG+GKT A A V +R + + + +V+ L Q F + Sbjct 52 KDVVVEAVTGSGKTLAFAIPVLERVTKCMKENRGSSGLYGIVISPTRELANQINTVFHTL 111 Query 71 L------DGRWTVTTLSGDMGPRAGFGHLARCH--DLLICTAELLQMALTSPEEEEHVEL 122 L + G + + + ++I T L +S V+ Sbjct 112 LQFYPEDQPPIKTQLIVGSLATVREDLNAFAENKPQIIIATPGRLLDFFSSNA----VKR 167 Query 123 TVFSLIVVDECHH 135 + ++V+DE Sbjct 168 STVEMVVLDEADR 180 >sp|Q6C7D2|HAS1_YARLI ATP-dependent RNA helicase HAS1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=HAS1 PE=3 SV=1 Length=605 Score = 91.4 bits (225), Expect = 7e-18, Method: Composition-based stats. Identities = 41/258 (16%), Positives = 84/258 (33%), Gaps = 42/258 (16%) Query 253 FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHR 312 G Q+ KL++ L R+ HL+ + + +D + + Sbjct 238 IGGNNRRQEEEKLNKGVNLLVCTPGRLLD-HLQNSQGFVFKNLKALIIDEADRILEIGFE 296 Query 313 EHVTKTQILCAERRLLALFDD----RKNELAHLAT----------HGPENPKLEMLEK-- 356 + + + + + R LF + +LA ++ + E LE+ Sbjct 297 QEMKEIIKILPKERQSMLFSATQTTKVEDLARISLKKGPLYLNVDEHNVSSTAEGLEQGY 356 Query 357 ----------ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA 406 +L + + I+F + S L +D+ L G Sbjct 357 VVCDSDKRFLLLFSFLKRNAGKKIIVFLSSCNSVKFYGELL------NYIDLPVLDLHG- 409 Query 407 GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV 466 Q+ + +F + +L+ T VA GLDIP + ++++ + + Sbjct 410 -------KQKQQKRTNTFFEFINAKQGVLICTDVAARGLDIPKVDWIIQFDPPDDPRDYI 462 Query 467 QARGR-ARADQSVYAFVA 483 GR AR S + + Sbjct 463 HRVGRTARGSASGKSIMF 480 Score = 57.1 bits (136), Expect = 4e-07, Method: Composition-based stats. Identities = 31/135 (23%), Positives = 51/135 (38%), Gaps = 9/135 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT---RAAAYVAKRHLETVD--GAKVVVLVNRVHLVT 61 Q + I P L G++++ TG+GKT A R L+ G V+V+ L Sbjct 158 QEKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEMLRKLKFKPRNGTGVIVVSPTRELAL 217 Query 62 QHGEEFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 Q R ++ + G R L + +LL+CT L L + + Sbjct 218 QIYGVARDLMANHSQTLGIVIGGNNRRQEEEKLNKGVNLLVCTPGRLLDHLQNSQGFVFK 277 Query 121 ELTVFSLIVVDECHH 135 L +++DE Sbjct 278 NLKA---LIIDEADR 289 >sp|Q5ANB2|DBP10_CANAL ATP-dependent RNA helicase DBP10 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DBP10 PE=3 SV=1 Length=908 Score = 92.2 bits (227), Expect = 7e-18, Method: Composition-based stats. Identities = 44/279 (16%), Positives = 90/279 (32%), Gaps = 32/279 (11%) Query 218 YNLCHRRSQDPFGDLLKKLMDQIHDHLE-------MPELSRKFGTQMYEQQVVKLSEAAA 270 ++ R + F + L +L+ + + + +P F V+ +A + Sbjct 248 FDEADRLFEMGFAEQLNELLASLPSNRQSLLFSATLPRSLVDFAKAGLTNPVLVRLDAES 307 Query 271 LAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLAL 330 Q Q Y + +A L++ + ++ + + + ++ Sbjct 308 KISDQLQMAYFTTKKNEREANLLYILQEVIKMPLGSEEQIKKLKDMDKRKIDSDSEDDDD 367 Query 331 FDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQ 390 ++RK P L + I+F T+ + L+ Sbjct 368 DEERKKGKKRYKFKKERLPPANRL----------PSPHSTIVFVPTKHHVEYVTKLLRDA 417 Query 391 QGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHC 450 G S + Q ++ + +F+ G N+LV T VA G+DIP Sbjct 418 --------------GYLVSYIYGTLDQHARKNQLYQFRVGLTNVLVVTDVAARGIDIPVL 463 Query 451 NVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSR 488 V+ + L + + GR ARA +A+ Sbjct 464 ANVINFTLPASSKIFIHRVGRTARAGNKGWAYSIVNEKE 502 Score = 51.3 bits (121), Expect = 3e-05, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 47/125 (38%), Gaps = 9/125 (7%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA--KVVVLVNRVHLVTQHGEEFR--RM 70 +EG++++ TG+GKT A L++ + V+L L Q ++ + Sbjct 134 MEGRDVVGMARTGSGKTAAFVLPLIERLKSRQPGGVRAVILSPSRELALQTYKQVKEFSH 193 Query 71 LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV 130 ++ + GD F + D+++CT + E +L IV Sbjct 194 GTNLQSIVLIGGD-SLEEDFSKMMTKPDIIVCTPGRFLH----LKVEMQYDLMTVQYIVF 248 Query 131 DECHH 135 DE Sbjct 249 DEADR 253 >sp|Q6CKI1|PRP5_KLULA Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=PRP5 PE=3 SV=1 Length=812 Score = 91.8 bits (226), Expect = 7e-18, Method: Composition-based stats. Identities = 37/218 (17%), Positives = 71/218 (33%), Gaps = 20/218 (9%) Query 275 QEQRVYALHLR-RYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD 333 + R++ L + N + + +A + ++T + + + Sbjct 405 EADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFPSKLKHFASRTLKNPIQITINSKSLI 464 Query 334 RKNELAHLATHGPENPKLEMLEKILQRQF--SSSNSPRGIIFTRTRQSAHSLLLWLQQQQ 391 +N + E+ K E L K L + + IIF ++Q L L Sbjct 465 NENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDEKTIIFVGSQQLCDLLYDEL---- 520 Query 392 GLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN 451 LL G ++ +QKF++ +L+ T V GL++P + Sbjct 521 ----------LLNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEVS 570 Query 452 VVVRYGLLTNEISMVQARGRARAD---QSVYAFVATEG 486 +V+ Y V GR +FV + Sbjct 571 LVIIYNAAKTIAQYVHTVGRTGRGTNNGVALSFVMVDE 608 Score = 52.1 bits (123), Expect = 1e-05, Method: Composition-based stats. Identities = 27/138 (20%), Positives = 48/138 (35%), Gaps = 11/138 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYV-----AKRH--LETVDGAKV-VVLVNRVH 58 Q + I + G+++I TG+GKT A + K L + + ++L Sbjct 273 QCQAIPAIMSGRDVIGISKTGSGKT-VAFLLPLVRQIKAQPPLAPDETGPIGLILTPTRE 331 Query 59 LVTQ-HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE 117 L Q E + + G + L R D+++ T +T Sbjct 332 LAVQIQEEALKFCKGSGISSICCVGGSELKQQINELKRGVDIIVATPGRFIDLMTLNSGH 391 Query 118 EHVELTVFSLIVVDECHH 135 + T S +V+DE Sbjct 392 -LLSPTRISFVVMDEADR 408 >sp|Q54EC2|DDX55_DICDI Probable ATP-dependent RNA helicase ddx55 OS=Dictyostelium discoideum OX=44689 GN=ddx55 PE=3 SV=1 Length=663 Score = 91.4 bits (225), Expect = 8e-18, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 69/191 (36%), Gaps = 18/191 (9%) Query 349 PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN 408 P E L +++ + + + II+ T + LQ ++L G Sbjct 293 PVEERLNQLVHFLLNHIDKNKIIIYFLTCSTVDYFFKILQ----------SVKVLSGKPF 342 Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 S + +V F T L++T +A GLDIP+ + V++Y + + V Sbjct 343 FSLHGKAPHSQRIKVFDSFSQATNGCLLSTDLAARGLDIPNVDWVLQYDSPQDPKAFVHR 402 Query 469 RGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQ 527 GR AR + A + + +E L + V V+ + + ++++ Sbjct 403 IGRTARMGRDGNALIFLSPEE-------DSYIEFLKIKKVPLVEMVKAENVTNVLPEIKK 455 Query 528 AALTKRAAQAA 538 + R Sbjct 456 ISFNDREIMEK 466 >sp|A3QA31|RAPA_SHELP RNA polymerase-associated protein RapA OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) OX=323850 GN=rapA PE=3 SV=1 Length=968 Score = 91.8 bits (226), Expect = 8e-18, Method: Composition-based stats. Identities = 76/453 (17%), Positives = 156/453 (34%), Gaps = 42/453 (9%) Query 27 GAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGP 86 G GKT A + + L T +++++V L Q E R + R++V + Sbjct 179 GLGKTIEAGLIIHQQLLTGRAERILIIVPD-TLRHQWLVEMLRRFNLRFSVFDEDRCVEA 237 Query 87 RAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHT--HKDTVYNV 144 A + L+IC+ L + + + L+VVDE HH ++ Sbjct 238 YADHDNPFYTEQLVICS----LELLRKKKRLDQALDADWDLMVVDEAHHLEWTEEEPSRA 293 Query 145 IMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCC 204 + ++ +P VL LTA+P G +H +L LD Q Sbjct 294 -----YRVVEALSEVVPGVLLLTATP------DQLGHQSHFARL-RLLDPDRFYDYQAFL 341 Query 205 PQLQEHSQQPCKQYNLC-HRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVV 263 + + + + L +R D L +L+++ ++ R + + + Sbjct 342 KEEESYKEVASAADALASGKRLPDEAVASLTELLNEK----DITPALRLIEDESVDNEQR 397 Query 264 KLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCA 323 + + L L ++ L R + A + R +A ++ + ++ Sbjct 398 DQARSELLQELLDRHGTGRVLYRNSRASVKGFPTRIFNAHPQTMPAQYKTAARVSDMMGG 457 Query 324 ERRLLALFDDRKNELAHLATHGPENP---KLEMLEKILQRQFSSSNSPRGIIFTRTRQSA 380 + L A + ++ K + L + S + +I ++A Sbjct 458 QTDLTAKVKQALSPEKLYQAFESDSASWWKFDPRVDWLIDFLKNHRSKKVLIIASQAETA 517 Query 381 HSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF--QDGTLNLLVAT 438 SL L+ ++G+Q M+ ++ + F + G L+ + Sbjct 518 LSLEEALRTREGIQATVFH-------------EGMSIIERDKAGAYFAQESGGAQALICS 564 Query 439 SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 + EG + + +V + L N + Q GR Sbjct 565 EIGSEGRNFQFASHLVLFDLPLNPDLLEQRIGR 597 >sp|A2QWW0|MAK5_ASPNC ATP-dependent RNA helicase mak5 OS=Aspergillus niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) OX=425011 GN=mak5 PE=3 SV=1 Length=766 Score = 91.8 bits (226), Expect = 8e-18, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 18/124 (15%) Query 365 SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI 424 + R ++FT + + L LQ +G + + M Q+ + + Sbjct 493 NPKHRTLVFTNSISAVRRLTQLLQN--------------LGLPALALHSSMAQKARLRSV 538 Query 425 QKFQDGTLN---LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYA 480 ++F T + +LVAT VA GLDI + V+ Y + V GR ARA S + Sbjct 539 ERFSSPTSDPSSILVATDVAARGLDIKGIDFVIHYHAPRAADTYVHRSGRTARAGASGKS 598 Query 481 FVAT 484 + Sbjct 599 VIIC 602 Score = 50.6 bits (119), Expect = 5e-05, Method: Composition-based stats. Identities = 27/140 (19%), Positives = 52/140 (37%), Gaps = 21/140 (15%) Query 15 LEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVD---------GAK-----VVVLVNRVHL 59 L+G ++I TG+GKT A + + +LE K +++ L Sbjct 227 LDGHDVIGKASTGSGKTLAFGIPILEHYLEKRRQDLRAGKEEKKKDTAPIALIMSPTREL 286 Query 60 VTQ---HGEEFRRMLDGRW-TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE 115 Q H E G + L+G + + + D++I T + L+S + Sbjct 287 AHQLAKHIGELALHAPGSNARIALLTGGLSVQKQ-QRVLAGADIVIGTPGRVWEVLSSGQ 345 Query 116 EEEHVELTVFSLIVVDECHH 135 +++ +V+DE Sbjct 346 GL-IRKMSEIKFLVIDEADR 364 >sp|Q12389|DBP10_YEAST ATP-dependent RNA helicase DBP10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DBP10 PE=1 SV=2 Length=995 Score = 91.8 bits (226), Expect = 8e-18, Method: Composition-based stats. Identities = 47/274 (17%), Positives = 89/274 (32%), Gaps = 23/274 (8%) Query 218 YNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQ 277 ++ R + F + L +L+ + + S +V +A + + + Sbjct 287 FDEADRLFEMGFQEQLNELLASLPTTRQTLLFSATL-----PNSLVDFVKAGLVNPVLVR 341 Query 278 RVYALHLRRYNDALLIHD--TVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRK 335 + + L + R + L LQ+ T Q+ + D Sbjct 342 LDAETKVSENLEMLFLSSKNADREANLLYILQEIIKIPLATSEQLQKLQNSNNEADSDSD 401 Query 336 NELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQT 395 +E K + ++ + + I+F TR + L+ Sbjct 402 DE-NDRQKKRRNFKKEKFRKQKMPAANELPSEKATILFVPTRHHVEYISQLLRD------ 454 Query 396 VDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVR 455 LI S + Q ++ + F+ G ++LV T VA G+DIP V+ Sbjct 455 ----CGYLI----SYIYGTLDQHARKRQLYNFRAGLTSILVVTDVAARGVDIPMLANVIN 506 Query 456 YGLLTNEISMVQARGR-ARADQSVYAFVATEGSR 488 Y L + V GR ARA +A+ + Sbjct 507 YTLPGSSKIFVHRVGRTARAGNKGWAYSIVAENE 540 Score = 58.3 bits (139), Expect = 2e-07, Method: Composition-based stats. Identities = 54/294 (18%), Positives = 103/294 (35%), Gaps = 22/294 (7%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA---KVVVLVNRVHLVTQHGEEFRRML 71 L+ ++I+ TG+GKT A L++ G + V+L L Q F+ Sbjct 172 LQSRDIVGMARTGSGKTAAFILPMVEKLKSHSGKIGARAVILSPSRELAMQTFNVFKDFA 231 Query 72 DG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV 130 G L+G FG + D++I T + E +++L +V Sbjct 232 RGTELRSVLLTGGDSLEEQFGMMMTNPDVIIATPGRFLH----LKVEMNLDLKSVEYVVF 287 Query 131 DECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS-PGTGGASKLDGAINHVLQLC 189 DE + + + L L Q L +A+ P + G +N VL Sbjct 288 DEADRL-----FEMGFQEQLNELLASLPTTRQTLLFSATLPNSLVDFVKAGLVNPVLV-- 340 Query 190 ANLDTWCIMSPQNCCPQL-QEHSQQPCKQYNLCHRRSQDPFGDL--LKKLMDQIH--DHL 244 LD +S L +++ + + + P L+KL + + D Sbjct 341 -RLDAETKVSENLEMLFLSSKNADREANLLYILQEIIKIPLATSEQLQKLQNSNNEADSD 399 Query 245 EMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVR 298 E R+ + ++++ + + A L ++ L + + I +R Sbjct 400 SDDENDRQKKRRNFKKEKFRKQKMPAANELPSEKATILFVPTRHHVEYISQLLR 453 >sp|O00148|DX39A_HUMAN ATP-dependent RNA helicase DDX39A OS=Homo sapiens OX=9606 GN=DDX39A PE=1 SV=2 Length=427 Score = 90.2 bits (222), Expect = 8e-18, Method: Composition-based stats. Identities = 34/199 (17%), Positives = 70/199 (35%), Gaps = 29/199 (15%) Query 310 YHREHVTKTQILCAERRLLALFDDRKNELAHLATHG--------PENPKLEMLEKILQRQ 361 ++K + + + ++ L HG ++ K L +L Sbjct 225 MFSATLSKDIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVL 284 Query 362 FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ 421 + IIF ++ Q +L L +Q + M Q ++ Sbjct 285 ----EFNQVIIFVKSVQRCMALAQLLVEQNFPAI--------------AIHRGMAQEERL 326 Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQS---V 478 Q+F+D +LVAT++ G+DI N+V Y + + + + RA + Sbjct 327 SRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLA 386 Query 479 YAFVATEGSRELKRELINE 497 FV+ E ++ ++ + Sbjct 387 ITFVSDENDAKILNDVQDR 405 Score = 47.9 bits (112), Expect = 3e-04, Method: Composition-based stats. Identities = 26/131 (20%), Positives = 46/131 (35%), Gaps = 8/131 (6%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQ--- 62 Q E I A+ G +++ +G GKT + +E V+G V+V+ + L Q Sbjct 71 QHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRELAFQISK 130 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 E F + + G + C +++ T + + L Sbjct 131 EYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTP----GRILALVRNRSFSL 186 Query 123 TVFSLIVVDEC 133 V+DEC Sbjct 187 KNVKHFVLDEC 197 >sp|A6ZXU0|DBP10_YEAS7 ATP-dependent RNA helicase DBP10 OS=Saccharomyces cerevisiae (strain YJM789) OX=307796 GN=DBP10 PE=3 SV=1 Length=995 Score = 91.8 bits (226), Expect = 8e-18, Method: Composition-based stats. Identities = 47/274 (17%), Positives = 89/274 (32%), Gaps = 23/274 (8%) Query 218 YNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQ 277 ++ R + F + L +L+ + + S +V +A + + + Sbjct 287 FDEADRLFEMGFQEQLNELLASLPTTRQTLLFSATL-----PNSLVDFVKAGLVNPVLVR 341 Query 278 RVYALHLRRYNDALLIHD--TVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRK 335 + + L + R + L LQ+ T Q+ + D Sbjct 342 LDAETKVSENLEMLFLSSKNADREANLLYILQEIIKIPLATSEQLQKLQNSNNEADSDSD 401 Query 336 NELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQT 395 +E K + ++ + + I+F TR + L+ Sbjct 402 DE-NDRQKKRRNFKKEKFRKQKMPAANELPSEKATILFVPTRHHVEYISQLLRD------ 454 Query 396 VDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVR 455 LI S + Q ++ + F+ G ++LV T VA G+DIP V+ Sbjct 455 ----CGYLI----SYIYGTLDQHARKRQLYNFRAGLTSILVVTDVAARGVDIPMLANVIN 506 Query 456 YGLLTNEISMVQARGR-ARADQSVYAFVATEGSR 488 Y L + V GR ARA +A+ + Sbjct 507 YTLPGSSKIFVHRVGRTARAGNKGWAYSIVAENE 540 Score = 58.3 bits (139), Expect = 2e-07, Method: Composition-based stats. Identities = 54/294 (18%), Positives = 103/294 (35%), Gaps = 22/294 (7%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA---KVVVLVNRVHLVTQHGEEFRRML 71 L+ ++I+ TG+GKT A L++ G + V+L L Q F+ Sbjct 172 LQSRDIVGMARTGSGKTAAFILPMVEKLKSHSGKIGARAVILSPSRELAMQTFNVFKDFA 231 Query 72 DG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV 130 G L+G FG + D++I T + E +++L +V Sbjct 232 RGTELRSVLLTGGDSLEEQFGMMMTNPDVIIATPGRFLH----LKVEMNLDLKSVEYVVF 287 Query 131 DECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS-PGTGGASKLDGAINHVLQLC 189 DE + + + L L Q L +A+ P + G +N VL Sbjct 288 DEADRL-----FEMGFQEQLNELLASLPTTRQTLLFSATLPNSLVDFVKAGLVNPVLV-- 340 Query 190 ANLDTWCIMSPQNCCPQL-QEHSQQPCKQYNLCHRRSQDPFGDL--LKKLMDQIH--DHL 244 LD +S L +++ + + + P L+KL + + D Sbjct 341 -RLDAETKVSENLEMLFLSSKNADREANLLYILQEIIKIPLATSEQLQKLQNSNNEADSD 399 Query 245 EMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVR 298 E R+ + ++++ + + A L ++ L + + I +R Sbjct 400 SDDENDRQKKRRNFKKEKFRKQKMPAANELPSEKATILFVPTRHHVEYISQLLR 453 >sp|A7F8V8|DBP7_SCLS1 ATP-dependent RNA helicase dbp7 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 GN=dbp7 PE=3 SV=1 Length=877 Score = 91.4 bits (225), Expect = 9e-18, Method: Composition-based stats. Identities = 86/545 (16%), Positives = 164/545 (30%), Gaps = 113/545 (21%) Query 22 IWLPTGAGKTRAAAY-VAKRHLETVDGA---------KVVVLVNRVHLVTQHGEEFRRML 71 I TG+GKT A + +R L D ++L L Q ++L Sbjct 299 IQAETGSGKTLAYLLPIVERILALSDNGIQIHRDSGLFAIILSPTRELCKQIAAVLEKVL 358 Query 72 --DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIV 129 TT++G ++ L + ++L+ T L L + E + + +V Sbjct 359 RCAPWIVGTTVNGGESKQSEKARLRKGVNILVATPGRLADHLDNTE---VLNVATVRWLV 415 Query 130 VDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLC 189 +DE D +M E +++ G S G+ + Sbjct 416 LDE-----GD----RLMELGFEEEIKGIVEK-----------IGRRSVASGSSEMMSLPK 455 Query 190 ANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPEL 249 + C + + +L E S + S+ D + +L Sbjct 456 RRVTILCSATMKMNVQRLGEISLKDAVHIQA--DPSEQEKQDKANGIEADDKAFSAPTQL 513 Query 250 SRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDF 309 + + + ++V L+ A ++ V A++ +VD +L Sbjct 514 KQSYAIVPAKLRLVTLTALLKRAFARKGSVMK--------AIVFMSCADSVDFHFSL--- 562 Query 310 YHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPR 369 K+ E ++ + + THG S+NS Sbjct 563 -FSRSAEKSAEASEEGKVDPPTLPKSELIKETITHGATI---------------SNNSNP 606 Query 370 GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD 429 I L + G +IR L S+ Sbjct 607 VI---------------LHKLHGSLAQNIRTATLKAYSESADPC---------------- 635 Query 430 GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVA----- 483 +L+ T VA GLD+P+ + V+ Y + + GR ARA + A + Sbjct 636 ----VLICTDVASRGLDLPNVDFVIEYDPPFSAEDHLHRVGRTARAGREGRALIFLMPGT 691 Query 484 --------TEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAA 535 G RE ++ L + E L+++ + + ++++ +L Sbjct 692 EEEYVSILASGYREGRKALTHHTAEDLIQKGFGGTGREWEERATNFQLEVERWSLDSPRY 751 Query 536 QAAQR 540 R Sbjct 752 LEMAR 756 >sp|Q0UHM7|DBP7_PHANO ATP-dependent RNA helicase DBP7 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) OX=321614 GN=DBP7 PE=3 SV=1 Length=831 Score = 91.4 bits (225), Expect = 9e-18, Method: Composition-based stats. Identities = 67/482 (14%), Positives = 138/482 (29%), Gaps = 95/482 (20%) Query 22 IWLPTGAGKTRAAAY-VAKRHLETVDGAK---------------VVVLVNRVHLVTQHGE 65 I TG+GKT A + +R +E K +++ L Q Sbjct 229 IQAETGSGKTLAYLLPIVQRLMELSANMKKHKDDDAVQRNSGLFAIIMAPTRELSKQIAL 288 Query 66 EFRRMLD--GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELT 123 ++L TT+ G ++ L + ++L+ T L L E E ++++ Sbjct 289 VLEKLLGCAHWLVATTVIGGEKKKSEKARLRKGINILVATPGRLADHL---EHTEALDVS 345 Query 124 VFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAIN 183 +V+DE + I L L+ ++ GL P + Sbjct 346 NVRWLVLDEGDRLMELGFEQEIQKIVGALNLRMRGNKTRIPGL---PDKRTTVLCSATMK 402 Query 184 HVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDH 243 ++ + + + + ++ +P + + + + Sbjct 403 MDVERLGQISLKDAVHLRADPTEREQEGDEPQDERSYAPAQLK----------------- 445 Query 244 LEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDAL 303 Q Y KL + +A L+ R + + + Sbjct 446 ------------QSYAVVAPKLRLVSLIAYLK--RAFTRKGSVMKAIVFVSCADSVDFHF 491 Query 304 AALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFS 363 L ++ + +K+ A + KL + S Sbjct 492 DILTSNLEEKNEKAEGTKDDTEEKADDDEPKKSTKKPKAIPQADPTKLSV-THAESPVLS 550 Query 364 SSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEV 423 + +A+ L + Q + Sbjct 551 PKSHA---------VTAYRL----------------------------HGSLQQSLRTST 573 Query 424 IQKF-QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF 481 + F ++ +L+AT VA GLD+P+ ++VV + + GR ARA + A Sbjct 574 LAHFTKNNDAAVLIATDVASRGLDLPNVDLVVEFDPAFAREDHLHRIGRTARAGRDGRAC 633 Query 482 VA 483 + Sbjct 634 IF 635 >sp|Q0JL73|RH26_ORYSJ DEAD-box ATP-dependent RNA helicase 26 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0618500 PE=2 SV=1 Length=536 Score = 90.6 bits (223), Expect = 9e-18, Method: Composition-based stats. Identities = 43/332 (13%), Positives = 113/332 (34%), Gaps = 40/332 (12%) Query 149 YLELKLQRAQPLPQ---VLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCP 205 +L ++ LP+ + L P A+++ +L+ +L ++ Sbjct 128 FLLPAIELLSTLPRSPSINLLVICPTRELANQVAAEARKLLKYHRSLGVQVVIGGTKLPQ 187 Query 206 QLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKL 265 + + PC+ R +D + +++ L ++ + + Sbjct 188 EQRSMQSNPCQILVATPGRLKDHLENT--PGFSNRIKGVKVLVLDE--ADRLLDMGFRRD 243 Query 266 SEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAER 325 E +E++ + + + VR + +A + + V + Sbjct 244 IEKIIAFIPKERQTLLF-------SATVPEEVRQISHIAMKRGYKFINTVKEG------- 289 Query 326 RLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLL 385 ++ ++++ + P + +L +L++ + + I+F T L+ Sbjct 290 -----DEETHSQVSQMYMVAPLDLHFSILYNVLKKHIAEDADYKVIVFC-TTAMVTKLVA 343 Query 386 WLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGL 445 + Q L +I + +Q + +V +F+ +LV++ V+ G+ Sbjct 344 EVLSQLKLNIREIH-------------SRKSQSARTKVSDEFRKSKGLILVSSDVSARGV 390 Query 446 DIPHCNVVVRYGLLTNEISMVQARGRARADQS 477 D P +V++ GL + + GR Sbjct 391 DYPDVTLVIQVGLPADREQYIHRLGRTGRKGK 422 Score = 56.7 bits (135), Expect = 5e-07, Method: Composition-based stats. Identities = 24/128 (19%), Positives = 49/128 (38%), Gaps = 9/128 (7%) Query 15 LEGKNIIIWLPTGAGKTRAAAYV----AKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRM 70 L+G++++ TG GKT A + L ++V+ L Q E R++ Sbjct 109 LQGEDVLAKAKTGTGKT-VAFLLPAIELLSTLPRSPSINLLVICPTRELANQVAAEARKL 167 Query 71 LDGRWTVT---TLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSL 127 L ++ + G P+ + +L+ T L+ L + + + + Sbjct 168 LKYHRSLGVQVVIGGTKLPQEQRSMQSNPCQILVATPGRLKDHLENTPGFSN-RIKGVKV 226 Query 128 IVVDECHH 135 +V+DE Sbjct 227 LVLDEADR 234 >sp|A5DZT7|DBP10_LODEL ATP-dependent RNA helicase DBP10 OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) OX=379508 GN=DBP10 PE=3 SV=1 Length=948 Score = 91.8 bits (226), Expect = 9e-18, Method: Composition-based stats. Identities = 43/279 (15%), Positives = 85/279 (30%), Gaps = 32/279 (11%) Query 218 YNLCHRRSQDPFGDLLKKLM-------DQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAA 270 ++ R + F + L +L+ + +P +F V+ +A + Sbjct 270 FDEADRLFEMGFAEQLNELLLALPSNRQSLLFSATLPRSLVEFAKAGLTNPVLVRLDADS 329 Query 271 LAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLAL 330 Q Y R +A L++ + + + + + ++ Sbjct 330 KLSENLQMAYFTTKRNEREANLLYILQEVIKMPLGTPEEVKKLAAMDKRSIESDEENEEA 389 Query 331 FDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQ 390 + + P + L + IIF T+ + L+ Sbjct 390 KEQNNGKKRKYKFKKERMPSAKEL----------PSEKSTIIFVPTKHHVEYVTSLLKDA 439 Query 391 QGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHC 450 G S + Q ++ + F+ G +LV T VA G+DIP Sbjct 440 --------------GYLVSYIYGTLDQHARKNQLYLFRIGLTKILVVTDVAARGIDIPVL 485 Query 451 NVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSR 488 V+ + L + + GR ARA +A+ S Sbjct 486 ANVINFTLPGSSKIFIHRVGRTARAGNKGWAYSIVNSSE 524 Score = 52.5 bits (124), Expect = 1e-05, Method: Composition-based stats. Identities = 25/114 (22%), Positives = 42/114 (37%), Gaps = 9/114 (8%) Query 26 TGAGKT--RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFR--RMLDGRWTVTTLS 81 TG+GKT + K L + G + V+L L Q ++ + ++ + Sbjct 167 TGSGKTAAFVLPLIEKLKLRSPSGVRAVILSPSRELALQTYKQVKEFSHGTNLQSIVLIG 226 Query 82 GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH 135 GD FG + D+++CT + E +L IV DE Sbjct 227 GD-SLEEDFGKMMTKPDIIVCTPGRFLH----LKVEMQYDLMSVQYIVFDEADR 275 >sp|A3GG51|MAK5_PICST ATP-dependent RNA helicase MAK5 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) OX=322104 GN=MAK5 PE=3 SV=2 Length=836 Score = 91.4 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 41/276 (15%), Positives = 88/276 (32%), Gaps = 36/276 (13%) Query 232 LLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVK--LSEAAALAGLQEQRVYALHLRRYND 289 + +L+ + D + + ++ + E + L + + Sbjct 365 RILELLQKDEDLTKRLASTDIIVLDEADRLLQDGHFEEFETILDLFRKNRPKNKTFPWKW 424 Query 290 ALLIHDTVRAVDALAAL-QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPEN 348 L+ + D L ++ + ++ L +L L +D+ N Sbjct 425 QTLVFSATFSRDLFGKLDKNQKSHKRNSEGSSLIGNDEILNLLNDKLKFKDTRPALVDAN 484 Query 349 PKLEMLEKILQRQFSSSNSPR--------------GIIFTRTRQSAHSLLLWLQQQQGLQ 394 PK + I + + R ++F + S L+ +L Sbjct 485 PKEIVSGNITEALVECGPTERDLYLYYFLLMYKGSTLVFANSIDSVKRLVPFLNNLNIPA 544 Query 395 TVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD----GTLNLLVATSVAEEGLDIPHC 450 + + M Q+ + +++FQ +L+A+ VA GLDIP+ Sbjct 545 F--------------AIHSSMIQKQRLRALERFQKASEKNDTAVLIASDVAARGLDIPNI 590 Query 451 NVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATE 485 + V Y L + + GR ARA + + + Sbjct 591 DHVAHYHLPRSADVYIHRSGRTARAGKEGVSVMFCS 626 Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats. Identities = 25/143 (17%), Positives = 50/143 (35%), Gaps = 18/143 (13%) Query 14 ALEGKNIIIWLPTGAGKTRAAAYVAKR-------HLETVDGAKV------VVLVNRVHLV 60 A EGK+++ TG+GKT A + K+ ++ L Sbjct 256 AAEGKDVVGKAITGSGKTLAYGIPILEKYLSNLSIINQNRQKKIINHPTGIIFAPTRELA 315 Query 61 TQ---HGEEFRRMLDGRWT-VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE 116 Q H + + +++G + + L+ +++ T + L +E Sbjct 316 HQVVSHLNSLAKYSPLSTNGIVSITGGLSIQKQERLLSHGPGIIVATPGRILE-LLQKDE 374 Query 117 EEHVELTVFSLIVVDECHHTHKD 139 + L +IV+DE +D Sbjct 375 DLTKRLASTDIIVLDEADRLLQD 397 >sp|Q8GXD6|RH49_ARATH DEAD-box ATP-dependent RNA helicase 49 OS=Arabidopsis thaliana OX=3702 GN=RH49 PE=2 SV=2 Length=558 Score = 90.6 bits (223), Expect = 1e-17, Method: Composition-based stats. Identities = 49/339 (14%), Positives = 105/339 (31%), Gaps = 52/339 (15%) Query 152 LKLQRAQPLP-QVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEH 210 + P P QV+G+ SP ++++ + N+++ ++ + + Sbjct 79 RRSNSYPPKPHQVMGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTL 138 Query 211 SQQPCKQYNLCHRRSQD-----PFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKL 265 ++ R D F D + + + + ++ + ++ K Sbjct 139 EEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQ 198 Query 266 SEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAER 325 + Q Q V L +A+ + + Sbjct 199 RRTGLFSATQTQAVADLAKAGLRNAMEVISGAESK------------------------- 233 Query 326 RLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLL 385 + L + K L +L + + + ++F T L Sbjct 234 ------SKTSSGLYCEYLKCEADQKSSQLVHLLIE----NKNKKLVVFFMTCACVDYWGL 283 Query 386 WLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGL 445 L + L+++ S M Q+ + + F + + +L+ T VA GL Sbjct 284 VLSKIPTLKSISF----------FSTHGKMDQKGRDTALASFTEASSGVLLCTDVAARGL 333 Query 446 DIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVA 483 DIP + VV+Y + + GR AR ++ A V Sbjct 334 DIPGIDYVVQYDPPQDPDVFIHRVGRTARMERQGRAIVF 372 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 26/139 (19%), Positives = 48/139 (35%), Gaps = 13/139 (9%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVD-----GAKV--VVLVNRVHL 59 Q E I K++++ TG+GKT A + + +V V++ L Sbjct 43 QAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTREL 102 Query 60 VTQHGEE---FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE 116 Q + F L +V + G +LLI T L + + Sbjct 103 SAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTLEEEGANLLIGTPGRLSDMM---KR 159 Query 117 EEHVELTVFSLIVVDECHH 135 E ++ ++++DE Sbjct 160 MEFLDFRNLEILILDEADR 178 >sp|P45125|UVRB_HAEIN UvrABC system protein B OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=uvrB PE=3 SV=1 Length=679 Score = 91.0 bits (224), Expect = 1e-17, Method: Composition-based stats. Identities = 45/302 (15%), Positives = 105/302 (35%), Gaps = 26/302 (9%) Query 307 QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSN 366 Q Y ++ + ++ L L P + +++ L ++ + Sbjct 393 QTIYVSATPGAYELEKSGSEIIDQVVRPTGLLDPLIEIRPVSIQVDDLLSEARQ--RADK 450 Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R ++ T T++ A L +L + G + + ++ E+I+ Sbjct 451 NERVLVTTLTKKMAEDLTDYLDE--------------HGIRVRYLHSDIDTVERVEIIRD 496 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLDIP ++V L +E S++Q GRA + + A Sbjct 497 LRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAI 556 Query 482 VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEY-QAKIRDLQQAALTKRAAQAAQR 540 + + + + + ET + + QA + + + + A + Sbjct 557 LYAD---SITKSMEKAITETNRRREKQTKYNEEHGIVPQALNKKVGELLDIGQGANQKAK 613 Query 541 ENQRQQFPVEHVQLLCINCMVAVGHGSDLRKVEGTHHVNVNP-NFSNYYNVSRDPVVINK 599 N+++ L A + ++K+E + F + + + Sbjct 614 ANKQRGKMAAEPTALYNAPKNAKEYQQQIKKLEQQMYKFAQDLEFEKAAAIRDQLHQLRE 673 Query 600 VF 601 F Sbjct 674 QF 675 >sp|A7TLA0|SUB21_VANPO ATP-dependent RNA helicase SUB2-1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 GN=SUB2-1 PE=3 SV=1 Length=441 Score = 89.9 bits (221), Expect = 1e-17, Method: Composition-based stats. Identities = 62/404 (15%), Positives = 123/404 (30%), Gaps = 51/404 (13%) Query 129 VVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQV---LGLTASPGTGGASKLDGAINHV 185 ++D + + + + + L Q LG TA +LD V Sbjct 72 IID----CGFEHP-SEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEV 126 Query 186 LQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLE 245 + +N + ++ K + +LLK H + Sbjct 127 SVVVICNARELAYQIRNEYLRFSKYMP-DVKTAVFYGGTPINKDAELLKNKETAPHIVVA 185 Query 246 MPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAA 305 P + ++ LS + +V R + + T R + Sbjct 186 TPGRLKALVRDK----LIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVM-- 239 Query 306 LQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG--------PENPKLEMLEKI 357 +++ R L + ++ A L HG EN K L ++ Sbjct 240 ----MFSATLSEEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYTKLQENEKNRKLAQL 295 Query 358 LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ 417 L + IIF ++ + A+ L L + HM Q Sbjct 296 LDDL----EFNQVIIFVKSTKRANELTKLLNESNFPAIT--------------VHGHMKQ 337 Query 418 RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQS 477 ++ + F++ + V+T V G+DI N+ + Y L T + GRA + Sbjct 338 AERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDLTTEADQYLHRVGRAGRFGT 397 Query 478 ---VYAFVATEGSRELK---RELINEALETLMEQAVAAVQKMDQ 515 +FV++ E+ +E + + E+ + ++ Sbjct 398 KGLAISFVSSPEDEEVLGKIQERFDVKIAEFPEEGIDPSTYLNN 441 Score = 47.1 bits (110), Expect = 4e-04, Method: Composition-based stats. Identities = 28/135 (21%), Positives = 52/135 (39%), Gaps = 14/135 (10%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQ--- 62 Q I ++ G +++ +G GKT + L+ V G VVV+ N L Q Sbjct 84 QQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVSVVVICNARELAYQIRN 143 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHD----LLICTAELLQMALTSPEEEE 118 F + + T G P L + + +++ T L+ + ++ Sbjct 144 EYLRFSKYMPDVKTAVFYGG--TPINKDAELLKNKETAPHIVVATPGRLK----ALVRDK 197 Query 119 HVELTVFSLIVVDEC 133 ++L+ V+DEC Sbjct 198 LIDLSHVKNFVIDEC 212 >sp|A5DDN0|SUB2_PICGU ATP-dependent RNA helicase SUB2 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=SUB2 PE=3 SV=3 Length=432 Score = 89.5 bits (220), Expect = 1e-17, Method: Composition-based stats. Identities = 55/357 (15%), Positives = 113/357 (32%), Gaps = 50/357 (14%) Query 185 VLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHL 244 VL LD P + H+++ Q + R D+ ++ Sbjct 103 VLSTLQQLDPV----PGEITTLVICHTRELAYQIRNEYARFSKYMPDVKTEVFYGGIPIA 158 Query 245 EMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALA 304 + E + T + + ++ L L E++ L+ + + A+D Sbjct 159 KDIEKLKNKDTCPH----IVVATPGRLHALVEEKAIRLNNVKSFVIDECDKVLEAIDMRR 214 Query 305 ALQDFYHREHVTKTQI-----------LCAERRLLALFDDRKNELAHLATHG-------- 345 +QD + K + ++ + + ++ A L HG Sbjct 215 DVQDIFRNTPHQKQVMMFSATLSQEIRPVCKKFMQNPLEIYVDDEAKLTLHGLQQYYLKL 274 Query 346 PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 E K L +L + IIF ++ A+ L L Sbjct 275 DEKEKNRKLADLLDSL----EFNQVIIFVKSTSRANELNKLLVASNFPSI---------- 320 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465 + + M Q ++ + F++ + V+T V G+DI N+ + Y L Sbjct 321 ----AVHSAMPQEERIARYKSFKEFNKRICVSTDVFGRGIDIERINLAINYDLPNEADQY 376 Query 466 VQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKI 522 + GRA + ++ GS+E + E LE + + + + + + Sbjct 377 LHRVGRAGRFGTKGLAISFVGSKEDE-----EVLEKIQSRFDVKITEFPEEGVDSST 428 Score = 42.5 bits (98), Expect = 0.012, Method: Composition-based stats. Identities = 28/135 (21%), Positives = 49/135 (36%), Gaps = 14/135 (10%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQ--- 62 Q I ++ G +++ +G GKT + L+ V G +V+ + L Q Sbjct 75 QQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEITTLVICHTRELAYQIRN 134 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHD----LLICTAELLQMALTSPEEEE 118 F + + T G P A + D +++ T L + EE+ Sbjct 135 EYARFSKYMPDVKTEVFYGG--IPIAKDIEKLKNKDTCPHIVVATPGRLH----ALVEEK 188 Query 119 HVELTVFSLIVVDEC 133 + L V+DEC Sbjct 189 AIRLNNVKSFVIDEC 203 >sp|A6ZXP4|SUB2_YEAS7 ATP-dependent RNA helicase SUB2 OS=Saccharomyces cerevisiae (strain YJM789) OX=307796 GN=SUB2 PE=3 SV=1 Length=446 Score = 89.5 bits (220), Expect = 1e-17, Method: Composition-based stats. Identities = 62/400 (16%), Positives = 120/400 (30%), Gaps = 43/400 (11%) Query 129 VVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQV---LGLTASPGTGGASKLDGAINHV 185 ++D + + + + + L Q LG TA +LD V Sbjct 77 IID----CGFEHP-SEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEV 131 Query 186 LQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLE 245 + +N + ++ K +LLK H + Sbjct 132 AVVVICNARELAYQIRNEYLRFSKYMP-DVKTAVFYGGTPISKDAELLKNKDTAPHIVVA 190 Query 246 MPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAA 305 P + + Y LS + +V R + + T R + Sbjct 191 TPGRLKALVREKYID----LSHVKNFVIDECDKVLEELDMRRDVQEIFRATPRDKQVM-- 244 Query 306 LQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPE--NPKLEM--LEKILQRQ 361 +++ R L + ++ A L HG + KLE + L + Sbjct 245 ----MFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLEEREKNRKLAQL 300 Query 362 FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ 421 + IIF ++ A+ L L HM Q ++ Sbjct 301 LDDLEFNQVIIFVKSTTRANELTKLLNASNFPAIT--------------VHGHMKQEERI 346 Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQS---V 478 + F+D + V+T V G+DI N+ + Y L + GRA + Sbjct 347 ARYKAFKDFEKRICVSTDVFGRGIDIERINLAINYDLTNEADQYLHRVGRAGRFGTKGLA 406 Query 479 YAFVATEGSRELK---RELINEALETLMEQAVAAVQKMDQ 515 +FV+++ E+ +E + + E+ + ++ Sbjct 407 ISFVSSKEDEEVLAKIQERFDVKIAEFPEEGIDPSTYLNN 446 Score = 50.2 bits (118), Expect = 4e-05, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 14/135 (10%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQ--- 62 Q I ++ G +++ +G GKT + L+ V G VVV+ N L Q Sbjct 89 QQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVAVVVICNARELAYQIRN 148 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHD----LLICTAELLQMALTSPEEEE 118 F + + T G P + L + D +++ T L+ + E+ Sbjct 149 EYLRFSKYMPDVKTAVFYGG--TPISKDAELLKNKDTAPHIVVATPGRLK----ALVREK 202 Query 119 HVELTVFSLIVVDEC 133 +++L+ V+DEC Sbjct 203 YIDLSHVKNFVIDEC 217 >sp|Q07478|SUB2_YEAST ATP-dependent RNA helicase SUB2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=SUB2 PE=1 SV=1 Length=446 Score = 89.5 bits (220), Expect = 1e-17, Method: Composition-based stats. Identities = 62/400 (16%), Positives = 120/400 (30%), Gaps = 43/400 (11%) Query 129 VVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQV---LGLTASPGTGGASKLDGAINHV 185 ++D + + + + + L Q LG TA +LD V Sbjct 77 IID----CGFEHP-SEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEV 131 Query 186 LQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLE 245 + +N + ++ K +LLK H + Sbjct 132 AVVVICNARELAYQIRNEYLRFSKYMP-DVKTAVFYGGTPISKDAELLKNKDTAPHIVVA 190 Query 246 MPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAA 305 P + + Y LS + +V R + + T R + Sbjct 191 TPGRLKALVREKYID----LSHVKNFVIDECDKVLEELDMRRDVQEIFRATPRDKQVM-- 244 Query 306 LQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPE--NPKLEM--LEKILQRQ 361 +++ R L + ++ A L HG + KLE + L + Sbjct 245 ----MFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLEEREKNRKLAQL 300 Query 362 FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ 421 + IIF ++ A+ L L HM Q ++ Sbjct 301 LDDLEFNQVIIFVKSTTRANELTKLLNASNFPAIT--------------VHGHMKQEERI 346 Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQS---V 478 + F+D + V+T V G+DI N+ + Y L + GRA + Sbjct 347 ARYKAFKDFEKRICVSTDVFGRGIDIERINLAINYDLTNEADQYLHRVGRAGRFGTKGLA 406 Query 479 YAFVATEGSRELK---RELINEALETLMEQAVAAVQKMDQ 515 +FV+++ E+ +E + + E+ + ++ Sbjct 407 ISFVSSKEDEEVLAKIQERFDVKIAEFPEEGIDPSTYLNN 446 Score = 50.2 bits (118), Expect = 4e-05, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 14/135 (10%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQ--- 62 Q I ++ G +++ +G GKT + L+ V G VVV+ N L Q Sbjct 89 QQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVAVVVICNARELAYQIRN 148 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHD----LLICTAELLQMALTSPEEEE 118 F + + T G P + L + D +++ T L+ + E+ Sbjct 149 EYLRFSKYMPDVKTAVFYGG--TPISKDAELLKNKDTAPHIVVATPGRLK----ALVREK 202 Query 119 HVELTVFSLIVVDEC 133 +++L+ V+DEC Sbjct 203 YIDLSHVKNFVIDEC 217 >sp|Q757U8|DBP10_EREGS ATP-dependent RNA helicase DBP10 OS=Eremothecium gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=DBP10 PE=3 SV=1 Length=960 Score = 91.0 bits (224), Expect = 1e-17, Method: Composition-based stats. Identities = 32/120 (27%), Positives = 45/120 (38%), Gaps = 15/120 (13%) Query 370 GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD 429 IIF TR + L+ G S + Q +++ + F+ Sbjct 413 TIIFVSTRHHVEYVSNLLKDC--------------GYLVSYLYGTLDQHARRQQLHNFRC 458 Query 430 GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSR 488 G N+LV T VA G+DIP VV L + V GR ARA +A+ S Sbjct 459 GLTNILVVTDVAARGVDIPLLANVVNMSLPASSKIFVHRVGRTARAGNKGWAYTILSESE 518 Score = 54.8 bits (130), Expect = 3e-06, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 48/125 (38%), Gaps = 8/125 (6%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVD---GAKVVVLVNRVHLVTQHGEEFRRML 71 L+ ++I+ TG+GKT A L+ GA+ ++L L Q + F+ Sbjct 155 LQQRDIVGMARTGSGKTAAFVLPLIEKLKMHSAKIGARAMILSPSRELAMQTHKVFKEFA 214 Query 72 DGRW-TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV 130 G L+G G F + D++I T + E +++L +V Sbjct 215 KGSNLRSVLLTGGDGLEDQFSMMMSNPDVIIATPGRFLH----LKVEMNLDLHSIEYVVF 270 Query 131 DECHH 135 DE Sbjct 271 DEADR 275 >sp|Q754U8|PRP5_EREGS Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Eremothecium gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=PRP5 PE=3 SV=2 Length=855 Score = 91.0 bits (224), Expect = 1e-17, Method: Composition-based stats. Identities = 40/247 (16%), Positives = 82/247 (33%), Gaps = 18/247 (7%) Query 275 QEQRVYALHLR-RYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD 333 + R++ L + N + + +A + +K + + Sbjct 436 EADRLFDLGFEPQVNQIMKCIRPDKQCVLFSATFPNKLKSFASKILHDPVYITVNSKSLI 495 Query 334 RKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGL 393 +N + E K + L L + N + I+F ++Q L L + G Sbjct 496 NENIEQKVEIFSNEEDKFKSLIHWLALTQQNLNDEKTIVFVSSQQICDILYNRL-EANGF 554 Query 394 QTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV 453 T I A + ++ ++ F++ +L+ T V GL++P ++V Sbjct 555 TTFAIHAGKIY-------------TERAWNLKCFKETANGILICTEVLSRGLNVPEVSLV 601 Query 454 VRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEAL--ETLMEQAVAAV 510 + Y V GR AR A + ++ +++ E L + A V Sbjct 602 IIYNAAKTFAQYVHTTGRTARGSNKGTALTLLMNTELAASYILMKSMRDEELNKHHDATV 661 Query 511 QKMDQAE 517 + Q Sbjct 662 STLKQMS 668 Score = 52.9 bits (125), Expect = 8e-06, Method: Composition-based stats. Identities = 26/138 (19%), Positives = 51/138 (37%), Gaps = 10/138 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVD-------GAKVVVLVNRVHL 59 Q + I + G+++I TG+GKT + R ++ G ++L L Sbjct 303 QAQAIPAIMSGRDVIGISKTGSGKTVSFILPLLRQIKAQRPLGGDETGPLGLILSPTREL 362 Query 60 VTQHGEEFRRMLDGRWTVTTL--SGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE 117 Q EE + G ++ +L +G + + R +++I T L+ Sbjct 363 ALQIHEEVTKFTSGDPSIRSLCCTGGSELKRQINDIKRGVEIVIATPGRFIDLLSLNSGN 422 Query 118 EHVELTVFSLIVVDECHH 135 + +V+DE Sbjct 423 -LINPKRIVFVVMDEADR 439 >sp|Q9CWT6|DDX28_MOUSE Probable ATP-dependent RNA helicase DDX28 OS=Mus musculus OX=10090 GN=Ddx28 PE=2 SV=2 Length=540 Score = 90.2 bits (222), Expect = 1e-17, Method: Composition-based stats. Identities = 30/131 (23%), Positives = 49/131 (37%), Gaps = 17/131 (13%) Query 350 KLEMLEKILQRQFSSSN---SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA 406 K+ L +IL++Q +S S ++F + + + L L + Sbjct 377 KVTELVQILKQQDKASKTEPSGTVLVFCNSASTVNWLGYILDDHK--------------I 422 Query 407 GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV 466 + M + + Q FQ G+ N+LV T +A GLD H VV+ Y + Sbjct 423 QHLRLQGQMPASMRAGIFQSFQKGSQNILVCTDIASRGLDSVHVEVVINYDFPPTLQDYI 482 Query 467 QARGRARADQS 477 GR S Sbjct 483 HRAGRVGRVGS 493 Score = 53.3 bits (126), Expect = 5e-06, Method: Composition-based stats. Identities = 36/137 (26%), Positives = 54/137 (39%), Gaps = 15/137 (11%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAY-VAKRHLETVDGA-------KVVVLVNRVH 58 Q + I P L G++++ TG+GKT + + +R L D + +VLV Sbjct 155 QSKTIPPLLRGRHLLCAAETGSGKTLSYLLPLFQRLLRGSDLDSRSFTAPRGLVLVPSRE 214 Query 59 LVTQ-HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARC--HDLLICTAELLQMALTSPE 115 L Q V L G +G L R D+L+ T L AL S Sbjct 215 LAEQVQAVAQSLGGYLGLQVIELGGGLGMSRLKLQLYRRPAADVLVATPGALWKALKS-- 272 Query 116 EEEHVELTVFSLIVVDE 132 + + L + IV+DE Sbjct 273 --QLISLQHLNFIVLDE 287 >sp|A6RSH5|DBP7_BOTFB ATP-dependent RNA helicase dbp7 OS=Botryotinia fuckeliana (strain B05.10) OX=332648 GN=dbp7 PE=3 SV=1 Length=877 Score = 91.0 bits (224), Expect = 1e-17, Method: Composition-based stats. Identities = 84/549 (15%), Positives = 170/549 (31%), Gaps = 113/549 (21%) Query 22 IWLPTGAGKTRAAAY----VAKRHLET------VDGAKVVVLVNRVHLVTQHGEEFRRML 71 I TG+GKT A E G ++L L Q ++L Sbjct 299 IQAETGSGKTLAYLLPIVERILALSENGVQIHRDSGLFAIILSPTRELCKQIAAVLEKVL 358 Query 72 --DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIV 129 TT++G ++ L + ++L+ T L L + E + + +V Sbjct 359 RCAPWIVGTTVNGGESKQSEKARLRKGVNILVATPGRLADHLDNTE---VLNVATVRWLV 415 Query 130 VDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLC 189 +DE D +M E +++ G+ G +K + + + + Sbjct 416 LDE-----GD----RLMELGFEEEIK---------GIVEKIGRRSVAKANSDMGSLPK-- 455 Query 190 ANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPEL 249 + C + + +L E S + + + + D +L Sbjct 456 RRVTILCSATMKMNVQRLGEISLKDAVHIQADPSEQEKQDKENGVEAQD--KAFSAPTQL 513 Query 250 SRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDF 309 + + + ++V L+ +R +A + I D++ Sbjct 514 KQSYAIVPAKLRLVTLTALL-------KRAFARKGSVMKAIVFISCA----DSVDFHFSL 562 Query 310 YHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPR 369 + R +++ E+ L P PK E++++ + + SN+ Sbjct 563 FSRTPEASAEVVDEEKVDL-----------------PALPKSELVKETIAHGTTISNNSN 605 Query 370 GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD 429 +I L + G +IR L S+ M Sbjct 606 PVI--------------LHKLHGSLAQNIRTATLKAFSESADPCVM-------------- 637 Query 430 GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVA----- 483 + T VA GLD+P+ + V+ Y + + GR ARA + A + Sbjct 638 ------ICTDVASRGLDLPNVDFVIEYDPPFSAEDHLHRVGRTARAGREGRALIFLMPGV 691 Query 484 --------TEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAA 535 G RE K+ L E L+++ + + + ++++ +L Sbjct 692 EEEYVSILASGYREGKKALTRHTAEDLIQKGFGGIGREWEERATNFQLEVERWSLDSPKY 751 Query 536 QAAQRENQR 544 R + Sbjct 752 LEMARRGYQ 760 >sp|Q818H2|CSHB_BACCR DEAD-box ATP-dependent RNA helicase CshB OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711) OX=226900 GN=cshB PE=2 SV=1 Length=436 Score = 89.5 bits (220), Expect = 2e-17, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 72/186 (39%), Gaps = 25/186 (13%) Query 305 ALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSS 364 L+ F + I +++ A + H K++++ K+L + Sbjct 194 KLKPFLKKYMENPEHIHINPKQVAAG------NIEHYLVPSKHRNKIDLVHKMLLQF--- 244 Query 365 SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI 424 ++FT T++ A + L ++ G ++ RD+++++ Sbjct 245 -KPYLAVVFTNTKKMADQVADGLMER--------------GLKVGRIHGDLSPRDRKKMM 289 Query 425 QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVA 483 ++ +D +VAT +A G+DI + V+ Y ++ V R ARA S A Sbjct 290 KQIRDLEFQYIVATDLAARGIDIQGISHVINYQPPSDLDFFVHRVARTARAGHSGIAVTI 349 Query 484 TEGSRE 489 + + E Sbjct 350 YDPANE 355 Score = 51.7 bits (122), Expect = 1e-05, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 51/133 (38%), Gaps = 10/133 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLE-TVDGAKVVVLVNRVHLVTQHGE 65 Q ++ +G ++I TG+GKT A + + + ++V+ L Q E Sbjct 31 QQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLNRINASREEVQLVITAPTRELAQQIYE 90 Query 66 EFRRMLDGRWTVTTLS-----GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 E ++ ++ G + L + +++ T ++ EE+ + Sbjct 91 EIVKLTKFCAEDQMITARCLIGGTDKQRSIEKLKKQPHIVVGTPGRIKD----LVEEQAL 146 Query 121 ELTVFSLIVVDEC 133 + + I+VDE Sbjct 147 FVHKANTIIVDEA 159 >sp|Q5T1V6|DDX59_HUMAN Probable ATP-dependent RNA helicase DDX59 OS=Homo sapiens OX=9606 GN=DDX59 PE=1 SV=1 Length=619 Score = 90.2 bits (222), Expect = 2e-17, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 72/180 (40%), Gaps = 20/180 (11%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K + L +IL P ++F + A L +Q+ GL+++ I Sbjct 429 KKKKLFEILND--KKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSISIH---------- 476 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + +Q +++ +++ +G ++V+T V GLD+ +VV + + ++ V Sbjct 477 ---SEKSQIERKNILKGLLEGDYEVVVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQI 533 Query 470 GR-ARADQSVYAF-VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQ 527 GR R Q+ A S+ L ++ T ++ Q ++ + R QQ Sbjct 534 GRVGRLGQNGTAITFINNNSKRLFWDIAKRVKPT---GSILPPQLLNSPYLHDQKRKEQQ 590 Score = 61.0 bits (146), Expect = 3e-08, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 54/132 (41%), Gaps = 11/132 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT--RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ-- 62 Q ++I L G++I+ TG+GKT + + E+ + ++L L Q Sbjct 230 QMQMIPVGLLGRDILASADTGSGKTAAFLLPVIMRALFESKTPS-ALILTPTRELAIQIE 288 Query 63 -HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVE 121 +E L TV + G P + L + ++I T L + ++ VE Sbjct 289 RQAKELMSGLPRMKTVLLVGGLPLPPQLY-RLQQHVKVIIATPGRLLDII----KQSSVE 343 Query 122 LTVFSLIVVDEC 133 L ++VVDE Sbjct 344 LCGVKIVVVDEA 355 >sp|Q7SFC8|ROK1_NEUCR ATP-dependent RNA helicase rok1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=drh-16 PE=3 SV=1 Length=781 Score = 90.6 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 32/154 (21%), Positives = 63/154 (41%), Gaps = 14/154 (9%) Query 350 KLEMLEKILQRQFSSSNSPRG----IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 KL L ++L S+ + P ++FT+T + A +L L+ L+ Sbjct 524 KLLALRQLLHPVSSADSGPPLRPPFLVFTQTIERAQALHDELKYDIPLEAGG-------S 576 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465 A + + + + +++ +F+ G + +L+ T V G+D N VV Y + + + Sbjct 577 ARVAVLHSSLPDSVRSKIMARFRSGEVWVLITTDVLARGVDFAGVNGVVNYDVPVSAAAY 636 Query 466 VQ---ARGRARADQSVYAFVATEGSRELKRELIN 496 V GRA + V T+ + + N Sbjct 637 VHRAGRTGRAGREGGVAVTFYTKDDIPFVKSVAN 670 >sp|Q761Z9|RH18_ORYSJ DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0164500 PE=1 SV=2 Length=647 Score = 90.2 bits (222), Expect = 2e-17, Method: Composition-based stats. Identities = 60/345 (17%), Positives = 119/345 (34%), Gaps = 50/345 (14%) Query 153 KLQRAQPLPQ----VLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQ 208 ++ R +P P VLG+ SP +S++ + + ++ + +L+ Sbjct 83 EILRRRPSPPKPHEVLGIIISPTRELSSQIYNVAQPFFATLKGVSSMLLVGGFDIKAELK 142 Query 209 EHSQQ--------PCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQ 260 + ++ P K +++ R + +L ++D+ + +L + Sbjct 143 KLEEEGANILVGTPGKLFDVMERLDTLNYKNLEILILDE---ADRLLDLGFQKQITSIIS 199 Query 261 QVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQI 320 ++ KL + Q + V L A A L++ E T+ + Sbjct 200 KLPKLRRTGLFSATQTEAVKEL-------------------AKAGLRNPVRVEVKTEVKP 240 Query 321 LCAERRLLALFDDRKNE-LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQS 379 + L + L + K L L + +N + +++ T Sbjct 241 TGKDGAQQELGPSKTPLGLRLEYMICEASNKSSQLVDFLVQ----NNGKKIMVYFATCAC 296 Query 380 AHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATS 439 + L L G+ M Q +++ + F + +LV T Sbjct 297 VDYWAIVLPLL----------DSLKGSPIIPYHGKMKQGPREKALASFSALSSGILVCTD 346 Query 440 VAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVA 483 VA GLDIPH +++V+Y + + GR AR DQ A V Sbjct 347 VAARGLDIPHVDLIVQYDPPQDPNVFIHRAGRTARYDQEGDAIVF 391 Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats. Identities = 22/138 (16%), Positives = 44/138 (32%), Gaps = 12/138 (9%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA------KVVVLVNRVHLV 60 Q I L K++ + TG+GKT A L +++ L Sbjct 50 QAAAIPLLLSHKDVAVDAATGSGKTLAFVVPVVEILRRRPSPPKPHEVLGIIISPTRELS 109 Query 61 TQHGEEFRRM---LDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE 117 +Q + L G ++ + G ++L+ T L + + Sbjct 110 SQIYNVAQPFFATLKGVSSMLLVGGFDIKAELKKLEEEGANILVGTPGKLFDVMERLDTL 169 Query 118 EHVELTVFSLIVVDECHH 135 + L ++++DE Sbjct 170 NYKNLE---ILILDEADR 184 >sp|Q63NE3|UVRB_BURPS UvrABC system protein B OS=Burkholderia pseudomallei (strain K96243) OX=272560 GN=uvrB PE=3 SV=1 Length=696 Score = 90.2 bits (222), Expect = 2e-17, Method: Composition-based stats. Identities = 39/187 (21%), Positives = 74/187 (40%), Gaps = 20/187 (11%) Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R +I T++ A L +L G + + ++ E+I+ Sbjct 465 NERVLITVLTKRMAEQLTEFLAD--------------HGVKVRYLHSDIDTVERVEIIRD 510 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + GT ++LV ++ EGLDIP ++V L E S++Q GRA + + A Sbjct 511 LRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAARNVNGKAL 570 Query 482 VATEGSRELKRELINEALETLMEQ-AVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR 540 + + + R I+E +Q A + +I+D+ A+A + Sbjct 571 LYADRITDSMRRAIDETERRRAKQIAYNEKMGITPRGVVKRIKDIIDGVYNADEARAELK 630 Query 541 ENQRQQF 547 E Q++ Sbjct 631 EAQQRAK 637 Score = 39.0 bits (89), Expect = 0.18, Method: Composition-based stats. Identities = 13/66 (20%), Positives = 21/66 (32%), Gaps = 7/66 (11%) Query 8 WEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEF 67 E + L + ++ TG+GKT + + +V L Q EF Sbjct 45 VEGVEDGLSFQTLLGV--TGSGKTYT----MANTIARLGRPAIVF-APNKTLAAQLYAEF 97 Query 68 RRMLDG 73 R Sbjct 98 REFFPR 103 >sp|Q62CK6|UVRB_BURMA UvrABC system protein B OS=Burkholderia mallei (strain ATCC 23344) OX=243160 GN=uvrB PE=3 SV=1 Length=696 Score = 90.2 bits (222), Expect = 2e-17, Method: Composition-based stats. Identities = 39/187 (21%), Positives = 74/187 (40%), Gaps = 20/187 (11%) Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R +I T++ A L +L G + + ++ E+I+ Sbjct 465 NERVLITVLTKRMAEQLTEFLAD--------------HGVKVRYLHSDIDTVERVEIIRD 510 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + GT ++LV ++ EGLDIP ++V L E S++Q GRA + + A Sbjct 511 LRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAARNVNGKAL 570 Query 482 VATEGSRELKRELINEALETLMEQ-AVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR 540 + + + R I+E +Q A + +I+D+ A+A + Sbjct 571 LYADRITDSMRRAIDETERRRAKQIAYNEKMGITPRGVVKRIKDIIDGVYNADEARAELK 630 Query 541 ENQRQQF 547 E Q++ Sbjct 631 EAQQRAK 637 Score = 39.0 bits (89), Expect = 0.18, Method: Composition-based stats. Identities = 13/66 (20%), Positives = 21/66 (32%), Gaps = 7/66 (11%) Query 8 WEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEF 67 E + L + ++ TG+GKT + + +V L Q EF Sbjct 45 VEGVEDGLSFQTLLGV--TGSGKTYT----MANTIARLGRPAIVF-APNKTLAAQLYAEF 97 Query 68 RRMLDG 73 R Sbjct 98 REFFPR 103 >sp|Q971U1|XPB1_SULTO DNA 3'-5' helicase/translocase StoXPB1 OS=Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) OX=273063 GN=xpb1 PE=1 SV=1 Length=543 Score = 89.9 bits (221), Expect = 2e-17, Method: Composition-based stats. Identities = 59/397 (15%), Positives = 122/397 (31%), Gaps = 57/397 (14%) Query 2 ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVT 61 ELR YQ E + L+ + +I LPTGAGKT + +++ + Sbjct 158 ELRDYQKEAVDTWLQRGSGVIALPTGAGKTVIGIKIITEV-----RKSTLIVTFTKDQML 212 Query 62 QHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVE 121 Q + + D + L + + I T Sbjct 213 QWRDAILKFTDANRSDIGL--------YYSEEKNIRPITITTYHTAY-------RHIDEL 257 Query 122 LTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGA 181 F L+++DE HH D ++ E+ L+ + LGL+A+P DG Sbjct 258 SGKFELLIIDEAHHLPAD--------RFKEIALK--CIASKRLGLSATPVRE-----DGK 302 Query 182 INHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIH 241 + +L L + + P + + + + + Sbjct 303 HEELFKLMGGLI----------------YFKTPQELIQKGYLAPFELIQIRVNLTSKEKL 346 Query 242 DHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDAL-LIHDTVRAV 300 + + RK ++++L + ++ ++Y + N A + + Sbjct 347 KYATLLSQFRKVAGGKKVSELIQLVKEGNSNAIEAMKIYNEMKKIVNLAENKLKALDDII 406 Query 301 DALAALQDFYHREHVTKTQILCAE--RRLLALFDDRKNELAHLATHGPENPKLEMLEKIL 358 + ++V + + + + L+ ++ L + +L + Sbjct 407 QKENGNKILIFTQYVDQAEEIAKKYNAYLITGKTNKNEREKILRIFKTLKSGILVLTTVG 466 Query 359 QRQFSSSNSPRGIIFT---RTRQSAHSLLLWLQQQQG 392 ++ GII T RQ L L+ G Sbjct 467 DEGLDIPDANVGIIVTGTGSRRQFIQRLGRLLRPSNG 503 Score = 68.7 bits (166), Expect = 8e-11, Method: Composition-based stats. Identities = 51/285 (18%), Positives = 102/285 (36%), Gaps = 26/285 (9%) Query 189 CANLDTWCIMSPQNCCPQLQEHSQQ-PCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMP 247 N+ I + + E S + + H D F ++ K + L Sbjct 236 EKNIRPITITTYHTAYRHIDELSGKFELLIIDEAHHLPADRFKEIALKCIASKRLGLSAT 295 Query 248 ELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYA-LHLRRYNDALLIHDTVRAVDALAAL 306 + + + + L L ++ A L + L + ++ L+ Sbjct 296 PVREDGKHEELFKLMGGLIYFKTPQELIQKGYLAPFELIQIRVNLTSKEKLKYATLLSQF 355 Query 307 QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSN 366 + + V++ L E A+ + + EN KL+ L+ I+Q++ N Sbjct 356 RKVAGGKKVSELIQLVKEGNSNAIEAMKIYNEMKKIVNLAEN-KLKALDDIIQKE----N 410 Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + +IFT+ A + A L+ G N + +++++++ Sbjct 411 GNKILIFTQYVDQAEEIAK-----------KYNAYLITGKTNKN--------EREKILRI 451 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 F+ +LV T+V +EGLDIP NV + + +Q GR Sbjct 452 FKTLKSGILVLTTVGDEGLDIPDANVGIIVTGTGSRRQFIQRLGR 496 >sp|A8EXS6|UVRB_RICCK UvrABC system protein B OS=Rickettsia canadensis (strain McKiel) OX=293613 GN=uvrB PE=3 SV=1 Length=661 Score = 90.2 bits (222), Expect = 2e-17, Method: Composition-based stats. Identities = 38/203 (19%), Positives = 81/203 (40%), Gaps = 24/203 (12%) Query 346 PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 P ++E L +Q + R ++ T T++ A L +LQ+ + Sbjct 426 PATNQVEDLISEIQTT--IAKGLRVLVTTLTKKMAEDLTTYLQELK-------------- 469 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLT 460 +S +++ ++ E+++ + GT+N+LV ++ EGLDIP C +V L Sbjct 470 YKSSYLHSNVHTLERLEILRDLRQGTINILVGINLLREGLDIPECGLVAILDADKEGFLR 529 Query 461 NEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA 520 +E+S++Q GRA + + + ++ + + ET+ + + Sbjct 530 SEVSLIQTIGRAARNSEGRVILYAD---KITKSIDKAVSETMRRRQIQQEYNEKHGIIPQ 586 Query 521 KIRDLQQAALTKRAAQAAQRENQ 543 I A + + + Q Sbjct 587 TINRTIYALTALKKIDSKLDKKQ 609 >sp|Q9WTM2|DDX6_CAVPO Probable ATP-dependent RNA helicase DDX6 (Fragment) OS=Cavia porcellus OX=10141 GN=DDX6 PE=2 SV=1 Length=472 Score = 89.1 bits (219), Expect = 2e-17, Method: Composition-based stats. Identities = 49/325 (15%), Positives = 104/325 (32%), Gaps = 23/325 (7%) Query 190 ANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPEL 249 N+ I+ + Q+ + Q K + G L+ + ++ D + + Sbjct 152 DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMAT-TGGTNLRDDIMRLDDTVHVVIA 210 Query 250 SRKFGTQMYEQQVVKLSEAAALAGLQEQRVYAL-HLRRYNDALLIHDTVRAVDALAALQD 308 + + ++ V K+ + + ++ + ++ D +L R + +A Sbjct 211 TPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFP 270 Query 309 FYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSP 368 ++ + L + + + + + E K+ L F + Sbjct 271 LSVQKFMN--SHLQKPYEINLMEELTLKGVTQYYAYVTERQKV----HCLNTLFPRLQTN 324 Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 + IIF + Q L + Q +G M Q + V F+ Sbjct 325 QSIIFCNSSQRVELLAKKISQ--------------LGYSCFYIHAKMRQEHRNRVFHDFR 370 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGS 487 +G LV T + G+DI NVV+ + + + GR R A Sbjct 371 NGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYD 430 Query 488 RELKRELINEALETLMEQAVAAVQK 512 + I E L T ++ + + K Sbjct 431 DRFNLKSIEEQLGTEIKPIPSNIDK 455 Score = 47.5 bits (111), Expect = 4e-04, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 63/167 (38%), Gaps = 14/167 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLE-TVDGAKVVVLVNRVHL---VTQ 62 Q E I AL G++I+ G GK+ A L+ D + +V+V L V+Q Sbjct 112 QEESIPIALTGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQ 171 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 + + + G V +G R L ++I T + + ++ ++ Sbjct 172 ICIQVSKHMGGA-KVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLI----KKGVAKV 226 Query 123 TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS 169 +IV+DE + IM + + Q+L +A+ Sbjct 227 DHVQMIVLDEADKLLSQD-FVQIMEDIILTLPKNR----QILLYSAT 268 >sp|P54823|DDX6_MOUSE Probable ATP-dependent RNA helicase DDX6 OS=Mus musculus OX=10090 GN=Ddx6 PE=1 SV=1 Length=483 Score = 89.1 bits (219), Expect = 2e-17, Method: Composition-based stats. Identities = 50/325 (15%), Positives = 104/325 (32%), Gaps = 23/325 (7%) Query 190 ANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPEL 249 N+ I+ + Q+ + Q K + G L+ + ++ D + + Sbjct 163 DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMAT-TGGTNLRDDIMRLDDTVHVVIA 221 Query 250 SRKFGTQMYEQQVVKLSEAAALAGLQEQRVYAL-HLRRYNDALLIHDTVRAVDALAALQD 308 + + ++ V K+ + + ++ + ++ D +L R + +A Sbjct 222 TPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFP 281 Query 309 FYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSP 368 ++ + L + + + + + E K+ L FS Sbjct 282 LSVQKFMN--SHLQKPYEINLMEELTLKGVTQYYAYVTERQKV----HCLNTLFSRLQIN 335 Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 + IIF + Q L + Q +G M Q + V F+ Sbjct 336 QSIIFCNSSQRVELLAKKISQ--------------LGYSCFYIHAKMRQEHRNRVFHDFR 381 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGS 487 +G LV T + G+DI NVV+ + + + GR R A Sbjct 382 NGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYD 441 Query 488 RELKRELINEALETLMEQAVAAVQK 512 + I E L T ++ + + K Sbjct 442 DRFNLKSIEEQLGTEIKPIPSNIDK 466 Score = 47.9 bits (112), Expect = 3e-04, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 63/167 (38%), Gaps = 14/167 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLE-TVDGAKVVVLVNRVHL---VTQ 62 Q E I AL G++I+ G GK+ A L+ D + +V+V L V+Q Sbjct 123 QEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQ 182 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 + + + G V +G R L ++I T + + ++ ++ Sbjct 183 ICIQVSKHMGGA-KVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLI----KKGVAKV 237 Query 123 TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS 169 +IV+DE + IM + + Q+L +A+ Sbjct 238 DHVQMIVLDEADKLLSQD-FVQIMEDIILTLPKNR----QILLYSAT 279 >sp|P21372|PRP5_YEAST Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=PRP5 PE=1 SV=1 Length=849 Score = 90.2 bits (222), Expect = 2e-17, Method: Composition-based stats. Identities = 47/363 (13%), Positives = 114/363 (31%), Gaps = 29/363 (8%) Query 164 LGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHR 223 +GL +P A ++ + + ++ + C Q+ ++ + Sbjct 332 MGLILAPTRELALQIHEEVTKFTEADTSIRSVCCTGGSEMKKQI-TDLKRGTEIVVATPG 390 Query 224 RSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQE--QRVYA 281 R D KL+ + + + + +E Q+ ++ + + Sbjct 391 RFIDILTLNDGKLLSTKRITFVVMDEADRLFDLGFEPQITQIMKTVRPDKQCVLFSATFP 450 Query 282 LHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHL 341 LR + +L +++ + + ++ L+ L +R + Sbjct 451 NKLRSFAVRVLHSPISITINSKGMVNENVKQKFRICHSEDEKFDNLVQLIHERSEFFDEV 510 Query 342 ATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQ 401 + Q + IIF ++ + L Sbjct 511 QSENDG-----------QSSDVEEVDAKAIIFVSSQNICDFISKKLLNA----------- 548 Query 402 LLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN 461 G + +++ ++KF+ ++L+ T V GL++P ++V+ Y + Sbjct 549 ---GIVTCAIHAGKPYQERLMNLEKFKREKNSILLCTEVLSRGLNVPEVSLVIIYNAVKT 605 Query 462 EISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA 520 V GR AR +S A ++++A+ +A+ +Q + E A Sbjct 606 FAQYVHTTGRTARGSRSGTAITLLLHDELSGAYILSKAMRDEEIKALDPLQAKELQEMSA 665 Query 521 KIR 523 K Sbjct 666 KFE 668 Score = 50.6 bits (119), Expect = 4e-05, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 55/138 (40%), Gaps = 10/138 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLE-TVDGAK------VVVLVNRVHL 59 Q + + + G+++I TG+GKT + R ++ +K ++L L Sbjct 283 QSQALPAIMSGRDVIGISKTGSGKTISYLLPLLRQVKAQRPLSKHETGPMGLILAPTREL 342 Query 60 VTQHGEEFRRMLDGRWTVTTL--SGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE 117 Q EE + + ++ ++ +G + L R ++++ T LT + + Sbjct 343 ALQIHEEVTKFTEADTSIRSVCCTGGSEMKKQITDLKRGTEIVVATPGRFIDILTLNDGK 402 Query 118 EHVELTVFSLIVVDECHH 135 + + +V+DE Sbjct 403 -LLSTKRITFVVMDEADR 419 >sp|A6ZLH6|PRP5_YEAS7 Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Saccharomyces cerevisiae (strain YJM789) OX=307796 GN=PRP5 PE=3 SV=1 Length=849 Score = 90.2 bits (222), Expect = 2e-17, Method: Composition-based stats. Identities = 47/363 (13%), Positives = 114/363 (31%), Gaps = 29/363 (8%) Query 164 LGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHR 223 +GL +P A ++ + + ++ + C Q+ ++ + Sbjct 332 MGLILAPTRELALQIHEEVTKFTEADTSIRSVCCTGGSEMKKQI-TDLKRGTEIVVATPG 390 Query 224 RSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQE--QRVYA 281 R D KL+ + + + + +E Q+ ++ + + Sbjct 391 RFIDILTLNDGKLLSTKRITFVVMDEADRLFDLGFEPQITQIMKTVRPDKQCVLFSATFP 450 Query 282 LHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHL 341 LR + +L +++ + + ++ L+ L +R + Sbjct 451 NKLRSFAVRVLHSPISITINSKGMVNENVKQKFRICHSEDEKFDNLVQLIHERSEFFDEV 510 Query 342 ATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQ 401 + Q + IIF ++ + L Sbjct 511 QSENDG-----------QSSDVEEVDAKAIIFVSSQNICDFISKKLLNA----------- 548 Query 402 LLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN 461 G + +++ ++KF+ ++L+ T V GL++P ++V+ Y + Sbjct 549 ---GIVTCAIHAGKPYQERLMNLEKFKREKNSILLCTEVLSRGLNVPEVSLVIIYNAVKT 605 Query 462 EISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA 520 V GR AR +S A ++++A+ +A+ +Q + E A Sbjct 606 FAQYVHTTGRTARGSRSGTAITLLLHDELSGAYILSKAMRDEEIKALDPLQAKELQEMSA 665 Query 521 KIR 523 K Sbjct 666 KFE 668 Score = 50.6 bits (119), Expect = 4e-05, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 55/138 (40%), Gaps = 10/138 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLE-TVDGAK------VVVLVNRVHL 59 Q + + + G+++I TG+GKT + R ++ +K ++L L Sbjct 283 QSQALPAIMSGRDVIGISKTGSGKTISYLLPLLRQVKAQRPLSKHETGPMGLILAPTREL 342 Query 60 VTQHGEEFRRMLDGRWTVTTL--SGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE 117 Q EE + + ++ ++ +G + L R ++++ T LT + + Sbjct 343 ALQIHEEVTKFTEADTSIRSVCCTGGSEMKKQITDLKRGTEIVVATPGRFIDILTLNDGK 402 Query 118 EHVELTVFSLIVVDECHH 135 + + +V+DE Sbjct 403 -LLSTKRITFVVMDEADR 419 >sp|Q0CMB0|ROK1_ASPTN ATP-dependent RNA helicase rok1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=rok1 PE=3 SV=2 Length=749 Score = 90.2 bits (222), Expect = 2e-17, Method: Composition-based stats. Identities = 56/315 (18%), Positives = 98/315 (31%), Gaps = 25/315 (8%) Query 171 GTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFG 230 D VL + D+ + + P + ++ P Sbjct 324 VVERDGDGDSDEKDVLD-EDSADSGSDSEDDEQTTDKKTKGKAPVTKSDI---LVTTPLL 379 Query 231 DLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDA 290 L+ L L L R + + L L + L + Sbjct 380 -LVNALSANRTKPLAALPLVRNIVLDEADVLLDPLFREQTLDIWRSCTHPEL-----RAS 433 Query 291 LLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH-LATHGPENP 349 L V+ LA ++ T+ R ++ L D + H L E Sbjct 434 LWSATMGSNVEDLAKSTIQERKDLSGTTKSYPLIRLVVGLKDSAIPNIQHKLVYAATEQG 493 Query 350 KLEMLEKILQRQFSSSNS----PRGIIFTRTRQSAHSL-LLWLQQQQGLQTVDIRAQLLI 404 KL L ++L ++ P +IFT+T A +L L R +L Sbjct 494 KLLGLRQLLHPTARTATDVHLRPPFLIFTQTIPRAVALHSELLYDIPPEAGGSSRIAVL- 552 Query 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 + ++ + E+++ F+ G + +LV T + G+D N VV Y + + Sbjct 553 -------HSELSDSQRSEIMKGFRKGEIWILVTTDLLARGVDFRGINGVVNYDIPNSAAV 605 Query 465 MVQARGR-ARADQSV 478 V GR RA + Sbjct 606 YVHRVGRTGRAGREG 620 Score = 48.3 bits (113), Expect = 2e-04, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 53/157 (34%), Gaps = 43/157 (27%) Query 20 IIIWLPTGAGKTR-----AAAYVAKRHLETVDGAKV--VVLVNRVHLVTQHGEEFRRMLD 72 +++ PTG+GKT + + H E D + VV+ L +Q E R+++ Sbjct 250 LLVVAPTGSGKTLSFLIPVINKIVRHHHEQPDERGIFAVVVAPTKELASQIVNEGRKLVQ 309 Query 73 GRWTVTTL-------------------------SGDMGPRAGFGHLARCH---------- 97 G TL S D G + Sbjct 310 GTGVKITLMKKGMQVVERDGDGDSDEKDVLDEDSADSGSDSEDDEQTTDKKTKGKAPVTK 369 Query 98 -DLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC 133 D+L+ T LL AL++ + L + IV+DE Sbjct 370 SDILVTTPLLLVNALSANRTKPLAALPLVRNIVLDEA 406 >sp|A3LZT3|DBP10_PICST ATP-dependent RNA helicase DBP10 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) OX=322104 GN=DBP10 PE=3 SV=2 Length=931 Score = 90.2 bits (222), Expect = 2e-17, Method: Composition-based stats. Identities = 52/314 (17%), Positives = 99/314 (32%), Gaps = 23/314 (7%) Query 179 DGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNL---CHRRSQDPFGDLLKK 235 D + + +N D + Q++ +Y + + F + L + Sbjct 207 DSLEDQFSSMVSNPDIVIATPGRFLHLQVEMQLDLKTVEYIVFDEADHLFEQGFAEQLNE 266 Query 236 LMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHD 295 L+ + + S + + LS + + ++ + Sbjct 267 LLAVLPPQRQSLLFSATLPRSLVDFAKAGLSNPVLVRLDADSKISDQLQMAFFTT---KK 323 Query 296 TVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLE 355 R + L LQ+ T QI + RL+ + + E L K + + Sbjct 324 NEREANLLYVLQEVIKMPLGTAEQI--KKLRLMDKRVNDEAEEEELENESGSKRKYKFKK 381 Query 356 KILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHM 415 + L + I+F T+ + L+ G S + Sbjct 382 ERLPSANVLPSPHSTIVFVPTKHHVEYITTLLRDA--------------GYLVSYIYGTL 427 Query 416 TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA 474 Q ++ + +F+ G +LV T VA G+DIP VV Y L + + GR ARA Sbjct 428 DQHARKNQLYQFRLGMTTVLVVTDVAARGIDIPVLANVVNYTLPGSSKIFIHRVGRTARA 487 Query 475 DQSVYAFVATEGSR 488 +A+ Sbjct 488 GNKGWAYSIVNEKE 501 Score = 47.9 bits (112), Expect = 3e-04, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 39/114 (34%), Gaps = 8/114 (7%) Query 26 TGAGKTRAAAYVAKRHLETVDGA---KVVVLVNRVHLVTQHGEEFRRMLDGRW-TVTTLS 81 TG+GKT A L+ + ++L L Q ++ + G L+ Sbjct 145 TGSGKTAAFTLPVIEKLKGHSARVGIRAIILSPSRELALQTYKQVKEFSKGSDLRAIVLT 204 Query 82 GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH 135 G F + D++I T + E ++L IV DE H Sbjct 205 GGDSLEDQFSSMVSNPDIVIATPGRFLH----LQVEMQLDLKTVEYIVFDEADH 254 >sp|A8GMJ1|UVRB_RICAH UvrABC system protein B OS=Rickettsia akari (strain Hartford) OX=293614 GN=uvrB PE=3 SV=1 Length=661 Score = 89.9 bits (221), Expect = 2e-17, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 89/222 (40%), Gaps = 37/222 (17%) Query 346 PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 P ++E L +Q + R ++ T T++ A L +LQ+ + Sbjct 426 PATKQVEDLISEIQAT--VAKGLRVLVTTLTKKMAEDLTAYLQELK-------------- 469 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLT 460 S +++ ++ E++Q + GT+++LV ++ EGLDIP C +V L Sbjct 470 YKTSYLHSNVHTLERIEILQDLRQGTIDILVGINLLREGLDIPECGLVAILDADKEGFLR 529 Query 461 NEISMVQARGRARADQSVYAFVATEG---------SRELKRELINEA-------LETLME 504 +E+S++Q GRA + + + S L+R I + + + Sbjct 530 SEVSLIQTIGRAARNSEGRVILYADKMTKSIDKALSETLRRRQIQQEYNEKHGIIPKTIN 589 Query 505 QAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQ 546 +A+ A+ +++ + + + +A + ++ Sbjct 590 RAIHALATLERVDSKCDTKQAHTLFDNTAKLKANINKLNKEM 631 >sp|Q5ZKB9|DDX6_CHICK Probable ATP-dependent RNA helicase DDX6 OS=Gallus gallus OX=9031 GN=DDX6 PE=2 SV=1 Length=483 Score = 89.1 bits (219), Expect = 2e-17, Method: Composition-based stats. Identities = 50/325 (15%), Positives = 104/325 (32%), Gaps = 23/325 (7%) Query 190 ANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPEL 249 N+ I+ + Q+ + Q K + G L+ + ++ D + + Sbjct 163 DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMAT-TGGTNLRDDIMRLDDTVHVVIA 221 Query 250 SRKFGTQMYEQQVVKLSEAAALAGLQEQRVYAL-HLRRYNDALLIHDTVRAVDALAALQD 308 + + ++ V K+ + + ++ + ++ D +L R + +A Sbjct 222 TPGRILDLIKKGVAKVEHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFP 281 Query 309 FYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSP 368 ++ + L + + + + + E K+ L FS Sbjct 282 LSVQKFMN--SHLQKPYEINLMEELTLKGVTQYYAYVTERQKV----HCLNTLFSRLQIN 335 Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 + IIF + Q L + Q +G M Q + V F+ Sbjct 336 QSIIFCNSSQRVELLAKKISQ--------------LGYSCFYIHAKMRQEHRNRVFHDFR 381 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGS 487 +G LV T + G+DI NVV+ + + + GR R A Sbjct 382 NGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYD 441 Query 488 RELKRELINEALETLMEQAVAAVQK 512 + I E L T ++ + + K Sbjct 442 DRFNLKSIEEQLGTEIKPIPSNIDK 466 Score = 46.7 bits (109), Expect = 6e-04, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 63/167 (38%), Gaps = 14/167 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLE-TVDGAKVVVLVNRVHL---VTQ 62 Q E I AL G++I+ G GK+ A L+ D + +V+V L V+Q Sbjct 123 QEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQ 182 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 + + + G V +G R L ++I T + + ++ ++ Sbjct 183 ICIQVSKHMGGA-KVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLI----KKGVAKV 237 Query 123 TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS 169 +IV+DE + IM + + Q+L +A+ Sbjct 238 EHVQMIVLDEADKLLSQD-FVQIMEDIILTLPKNR----QILLYSAT 279 >sp|Q6CDN5|DBP6_YARLI ATP-dependent RNA helicase DBP6 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DBP6 PE=3 SV=1 Length=607 Score = 89.5 bits (220), Expect = 3e-17, Method: Composition-based stats. Identities = 43/207 (21%), Positives = 84/207 (41%), Gaps = 24/207 (12%) Query 333 DRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQG 392 L + TH K ML ++L + + RG++FT++ ++A + + + Sbjct 421 SIPKSLTEIVTHVSAAEKPLMLCELLVQ----RDINRGVVFTKSSETAARVARMM---EI 473 Query 393 LQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNV 452 + I ++ S + ++ +++F DG ++ LV T + G+D + Sbjct 474 MDADIFHKDWKI----AAVSAETSSVHRRRSMKQFIDGKIDFLVCTDLVSRGIDF-VVDN 528 Query 453 VVRYGLLTNEISMVQARGR-ARADQSV--YAFVATEGSRELKRELINEALETLMEQAVAA 509 V+ Y + + + V GR ARA + Y F+ G + RE + + V Sbjct 529 VINYDIPSGKREYVHRVGRTARAGREGNAYTFLTGSGEAKWFRE---------IGEFVGR 579 Query 510 VQKMDQAEYQAKIRDLQQAALTKRAAQ 536 Q++D + D Q AL K + Sbjct 580 TQEVDATHINSSHNDGYQEALAKLEEE 606 Score = 52.5 bits (124), Expect = 1e-05, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 42/126 (33%), Gaps = 8/126 (6%) Query 20 IIIWLPTGAGKTRAAAYVAKRHLE--TVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRW-T 76 +++ TG+GKT L V + VV++ LV Q + + G + Sbjct 237 LLVSASTGSGKTATYGIPIIEKLRDRIVPRIRAVVVLPTKPLVMQVRDVLENLSKGSSLS 296 Query 77 VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHT 136 V L D + + D+++ L + E + +VVDE Sbjct 297 VVALRNDRSTKRER-AVLETADIVVAAPGRLVEQVKENPEL----FSYIEFLVVDEADRL 351 Query 137 HKDTVY 142 Y Sbjct 352 LGQDYY 357 >sp|Q54CD8|DDX54_DICDI ATP-dependent RNA helicase ddx54 OS=Dictyostelium discoideum OX=44689 GN=helA PE=3 SV=1 Length=1091 Score = 90.2 bits (222), Expect = 3e-17, Method: Composition-based stats. Identities = 24/127 (19%), Positives = 48/127 (38%), Gaps = 15/127 (12%) Query 363 SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE 422 IIF T+ + + L++ G ++ ++ ++ Sbjct 493 QQQKKSSTIIFVSTKYHVEFIHILLERA--------------GIASTYIHGYLDPVARKI 538 Query 423 VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF 481 + KF+ + ++V T +A G+DIP + V+ + E + GR ARA +S A+ Sbjct 539 NLAKFRSHQVGVMVVTDLAARGIDIPLLDNVINFDFPPKEKIFIHRVGRVARAGRSGIAY 598 Query 482 VATEGSR 488 Sbjct 599 SLVSPDE 605 Score = 51.3 bits (121), Expect = 3e-05, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 48/125 (38%), Gaps = 8/125 (6%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRHL---ETVDGAKVVVLVNRVHLVTQHGEEFRRML 71 L+G +I+ TG+GKT A + L T G + V+L L Q + + Sbjct 265 LDGHDIVGMARTGSGKTGAFVIPMIQKLGDHSTTVGVRAVILSPTRELAIQTFKVVKDFS 324 Query 72 DG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV 130 G + + G F LAR D++I T L L E + L+ IV Sbjct 325 QGTQLRTILIVGGDSMEDQFTDLARNPDIIIATPGRLMHHLL----ETGMSLSKVQYIVF 380 Query 131 DECHH 135 DE Sbjct 381 DEADR 385 >sp|Q9ZDW2|UVRB_RICPR UvrABC system protein B OS=Rickettsia prowazekii (strain Madrid E) OX=272947 GN=uvrB PE=3 SV=1 Length=662 Score = 89.9 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 88/222 (40%), Gaps = 37/222 (17%) Query 346 PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 P ++E L +Q + R ++ T T++ A L +LQ Q Sbjct 426 PATNQVEDLISEIQTT--INTGLRILVTTLTKKMAEDLTSYLQDLQYKTY---------- 473 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLT 460 +++ ++ E+++ + GT+++LV ++ EG+DIP C +V L Sbjct 474 ----YLHSNIHTLERIEILRNLRQGTIDILVGINLLREGIDIPECGLVAILDADKEGFLR 529 Query 461 NEISMVQARGRARADQSVYAFVATEG---------SRELKRELINEA-------LETLME 504 +E S++Q GRA + + + S L+R I + + + Sbjct 530 SETSLIQTIGRAARNSRGKVILYADKMTKSIDKAVSETLRRRQIQQEYNKKHGIIPKTIN 589 Query 505 QAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQ 546 +A+ A++ +++ + A L A A + +++ Sbjct 590 RAIHALESLEEIHDNKLDKKQANALLNNPAKLKAHMDKLKKE 631 >sp|Q6BL34|DBP10_DEBHA ATP-dependent RNA helicase DBP10 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DBP10 PE=3 SV=2 Length=932 Score = 90.2 bits (222), Expect = 3e-17, Method: Composition-based stats. Identities = 31/120 (26%), Positives = 47/120 (39%), Gaps = 15/120 (13%) Query 370 GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD 429 IIF T+ + L+ G S + Q +++ + +F+ Sbjct 393 TIIFVPTKHHVEYVTTLLKDA--------------GYLVSYIYGTLDQHARKQQLYQFRI 438 Query 430 GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSR 488 G +LLV T VA G+DIP VV Y L + + GR ARA S +A+ Sbjct 439 GMTSLLVVTDVAARGIDIPILANVVNYTLPGSSKIFIHRVGRTARAGNSGWAYSIVNEKE 498 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 42/116 (36%), Gaps = 12/116 (10%) Query 26 TGAGKTRAAAYVAKRHLETVDGA---KVVVLVNRVHLVTQ---HGEEFRRMLDGRWTVTT 79 TG+GKT A L++ + ++L L +Q +EF + D R V Sbjct 143 TGSGKTAAFTLPLVEKLKSHSPRVGVRAIILSPSRELASQTFKQVKEFSKGTDLRSIV-- 200 Query 80 LSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH 135 L G F + D+++ T + E +EL IV DE Sbjct 201 LIGGDSLEEQFSSMMTNPDVIVATPGRFLH----LKVEMELELKTVEYIVFDEADR 252 >sp|P26196|DDX6_HUMAN Probable ATP-dependent RNA helicase DDX6 OS=Homo sapiens OX=9606 GN=DDX6 PE=1 SV=2 Length=483 Score = 88.7 bits (218), Expect = 3e-17, Method: Composition-based stats. Identities = 50/325 (15%), Positives = 104/325 (32%), Gaps = 23/325 (7%) Query 190 ANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPEL 249 N+ I+ + Q+ + Q K + G L+ + ++ D + + Sbjct 163 DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMAT-TGGTNLRDDIMRLDDTVHVVIA 221 Query 250 SRKFGTQMYEQQVVKLSEAAALAGLQEQRVYAL-HLRRYNDALLIHDTVRAVDALAALQD 308 + + ++ V K+ + + ++ + ++ D +L R + +A Sbjct 222 TPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFP 281 Query 309 FYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSP 368 ++ + L + + + + + E K+ L FS Sbjct 282 LSVQKFMN--SHLQKPYEINLMEELTLKGVTQYYAYVTERQKV----HCLNTLFSRLQIN 335 Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 + IIF + Q L + Q +G M Q + V F+ Sbjct 336 QSIIFCNSSQRVELLAKKISQ--------------LGYSCFYIHAKMRQEHRNRVFHDFR 381 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGS 487 +G LV T + G+DI NVV+ + + + GR R A Sbjct 382 NGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYD 441 Query 488 RELKRELINEALETLMEQAVAAVQK 512 + I E L T ++ + + K Sbjct 442 DRFNLKSIEEQLGTEIKPIPSNIDK 466 Score = 47.5 bits (111), Expect = 3e-04, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 63/167 (38%), Gaps = 14/167 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLE-TVDGAKVVVLVNRVHL---VTQ 62 Q E I AL G++I+ G GK+ A L+ D + +V+V L V+Q Sbjct 123 QEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQ 182 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 + + + G V +G R L ++I T + + ++ ++ Sbjct 183 ICIQVSKHMGGA-KVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLI----KKGVAKV 237 Query 123 TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS 169 +IV+DE + IM + + Q+L +A+ Sbjct 238 DHVQMIVLDEADKLLSQD-FVQIMEDIILTLPKNR----QILLYSAT 279 >sp|Q4QJX4|UVRB_HAEI8 UvrABC system protein B OS=Haemophilus influenzae (strain 86-028NP) OX=281310 GN=uvrB PE=3 SV=1 Length=679 Score = 89.5 bits (220), Expect = 3e-17, Method: Composition-based stats. Identities = 43/272 (16%), Positives = 98/272 (36%), Gaps = 26/272 (10%) Query 337 ELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTV 396 L L P + +++ L ++ + + R ++ T T++ A L +L + Sbjct 423 LLDPLIEIRPVSIQVDDLLSEARQ--RADKNERVLVTTLTKKMAEDLTDYLDE------- 473 Query 397 DIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY 456 G + + ++ E+I+ + G ++LV ++ EGLDIP ++V Sbjct 474 -------HGIRVRYLHSDIDTVERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAIL 526 Query 457 G-----LLTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQ 511 L +E S++Q GRA + + A + + + + + ET + Sbjct 527 DADKEGFLRSERSLIQTIGRAARNLNGKAILYAD---SITKSMEKAITETNRRREKQIKY 583 Query 512 KMDQAEY-QAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQLLCINCMVAVGHGSDLR 570 + QA + + + + A + N+++ L A + ++ Sbjct 584 NEEHGIVPQALNKKVGELLDIGQGANQKAKANKQRGKMAAEPTALYNAPKNAKEYQQQIK 643 Query 571 KVEGTHHVNVNP-NFSNYYNVSRDPVVINKVF 601 K+E + F + + + F Sbjct 644 KLEQQMYKFAQDLEFEKAAAIRDQLHQLREQF 675 >sp|A7TJK8|PRP5_VANPO Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 GN=PRP5 PE=3 SV=1 Length=872 Score = 89.9 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 49/376 (13%), Positives = 117/376 (31%), Gaps = 31/376 (8%) Query 151 ELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEH 210 + L + + P LGL +P A +++ + + ++ T C Q+ Sbjct 342 QRTLSKNETGP--LGLILAPTRELALQINEEVEKFTKQDRSIRTICCTGGSEMKKQI-ND 398 Query 211 SQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAA 270 ++ + R D KL+ + + + + +E Q+ ++ + Sbjct 399 LKRGVEIVVATPGRLIDILTLNSGKLISTKRITFVVMDEADRLFDMGFEPQITQIMKTVR 458 Query 271 LAGLQE--QRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLL 328 + LR + +L +++ + + ++ + RL+ Sbjct 459 PDKQCVLFSATFPNKLRSFAARILTDPLTVTINSNNLVNENVNQSFYIEDNENDKFNRLV 518 Query 329 ALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQ 388 + D ++ ++ E + + + IIF ++Q L L+ Sbjct 519 NILDGFYKVNKNITSNSEE-----------REIDEEVSDKKIIIFVSSQQFCDLLYSKLE 567 Query 389 QQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIP 448 +++ ++KF+ T ++L+ T V GL++P Sbjct 568 NFGYFPYT--------------IHAGKPYQERVMNLEKFKTTTNSILLCTEVLSRGLNVP 613 Query 449 HCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAV 507 ++V+ Y V GR AR A ++ AL ++ Sbjct 614 EVSLVIIYNAAKTFAQYVHTTGRTARGTHKGDAITLLLPDELAAAYILKRALRERELSSI 673 Query 508 AAVQKMDQAEYQAKIR 523 D + + Sbjct 674 DPQMVEDMKQMSERFE 689 Score = 55.6 bits (132), Expect = 1e-06, Method: Composition-based stats. Identities = 27/138 (20%), Positives = 53/138 (38%), Gaps = 10/138 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHL-------ETVDGAKVVVLVNRVHL 59 Q + I + G+++I TG+GKT + R + + G ++L L Sbjct 304 QSQAIPAIMSGRDLIGISKTGSGKTISYILPMLRQIKAQRTLSKNETGPLGLILAPTREL 363 Query 60 VTQHGEEFRRMLDGRWTVTTL--SGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE 117 Q EE + ++ T+ +G + L R ++++ T L LT + Sbjct 364 ALQINEEVEKFTKQDRSIRTICCTGGSEMKKQINDLKRGVEIVVATPGRLIDILTLNSGK 423 Query 118 EHVELTVFSLIVVDECHH 135 + + +V+DE Sbjct 424 -LISTKRITFVVMDEADR 440 >sp|A5DLR3|DBP10_PICGU ATP-dependent RNA helicase DBP10 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DBP10 PE=3 SV=2 Length=914 Score = 89.9 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 46/125 (37%), Gaps = 15/125 (12%) Query 365 SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI 424 + I+F T+ + L+ G S + Q +++ + Sbjct 386 PSEHSTIVFVPTKHHVEYVTTLLRDA--------------GHLVSYIYGTLDQHARKQQL 431 Query 425 QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVA 483 +F+ N+LV T VA G+DIP VV Y L + + GR ARA +A+ Sbjct 432 YQFRAAYTNILVVTDVAARGIDIPVLANVVNYTLPGSSKIFIHRVGRTARAGNKGWAYSI 491 Query 484 TEGSR 488 Sbjct 492 VNEKE 496 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 42/116 (36%), Gaps = 12/116 (10%) Query 26 TGAGKTRAAAYVAKRHLETVDGA---KVVVLVNRVHLVTQ---HGEEFRRMLDGRWTVTT 79 TG+GKT A L++ + V+L L Q +EF + D R V Sbjct 145 TGSGKTAAFVLPVVEKLKSHSPKVGVRAVILSPSRELALQTFKQVKEFTKGTDLRSIV-- 202 Query 80 LSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH 135 L G F + D+L+ T + E +++L IV DE Sbjct 203 LIGGDSLEDQFSSMMTNPDILVATPGRFLH----LKVEMNLDLKTVEYIVFDEADR 254 >sp|P54824|DDX6_XENLA ATP-dependent RNA helicase ddx6 OS=Xenopus laevis OX=8355 GN=ddx6 PE=1 SV=2 Length=481 Score = 88.7 bits (218), Expect = 3e-17, Method: Composition-based stats. Identities = 33/158 (21%), Positives = 52/158 (33%), Gaps = 15/158 (9%) Query 356 KILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHM 415 L FS + IIF + Q L + Q +G M Sbjct 322 HCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQ--------------LGYSCFYIHAKM 367 Query 416 TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA 474 Q + V F++G LV T + G+DI NVV+ + + + GR R Sbjct 368 RQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRF 427 Query 475 DQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQK 512 A + I E L T ++ +++ K Sbjct 428 GHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSSIDK 465 Score = 47.9 bits (112), Expect = 3e-04, Method: Composition-based stats. Identities = 33/167 (20%), Positives = 62/167 (37%), Gaps = 14/167 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHL---VTQ 62 Q E I AL G++I+ G GK+ A L+ + +V+V L V+Q Sbjct 122 QEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDCIQAMVIVPTRELALQVSQ 181 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 + + + G V +G R L ++I T + + ++ ++ Sbjct 182 ICIQVSKHMGGA-KVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLI----KKGVAKV 236 Query 123 TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS 169 +IV+DE + IM + + Q+L +A+ Sbjct 237 DHIQMIVLDEADKLLSQD-FMQIMEDIIMTLPKNR----QILLYSAT 278 >sp|Q8K4L0|DDX54_MOUSE ATP-dependent RNA helicase DDX54 OS=Mus musculus OX=10090 GN=Ddx54 PE=1 SV=1 Length=874 Score = 89.9 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 32/136 (24%), Positives = 54/136 (40%), Gaps = 17/136 (13%) Query 347 ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA 406 E+ K +L +LQ + + ++F T+ A L L Q G Sbjct 319 EDTKAAVLLYLLQNVVRPQD--QTVVFVATKHHAEYLTELLMGQ--------------GV 362 Query 407 GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV 466 + + + Q ++ + KF + L+ T +A GLDIP + V+ Y + Sbjct 363 SCAHIYSALDQTARKINLAKFTHNKCSTLIVTDLAARGLDIPLLDNVINYSFPAKGKLFL 422 Query 467 QARGR-ARADQSVYAF 481 GR ARA +S A+ Sbjct 423 HRVGRVARAGRSGTAY 438 Score = 50.2 bits (118), Expect = 6e-05, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 47/127 (37%), Gaps = 12/127 (9%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVD---GAKVVVLVNRVHLVTQHG---EEFR 68 L+GK+++ TG+GKT L+ GA+ ++L L Q +E Sbjct 130 LDGKDVVAMARTGSGKTACFLLPMFERLKARSAQTGARALILSPTRELALQTMKFTKELG 189 Query 69 RMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLI 128 + + + M + F L D++I T L E +++L + Sbjct 190 KFTGLKTALILGGDKMEDQ--FAALHENPDIIIATPGRLVHV----AVEMNLKLQSVEYV 243 Query 129 VVDECHH 135 V DE Sbjct 244 VFDEADR 250 >sp|P0CQ83|DBP4_CRYNB ATP-dependent RNA helicase DBP4 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=DBP4 PE=3 SV=1 Length=859 Score = 89.9 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 44/244 (18%), Positives = 81/244 (33%), Gaps = 40/244 (16%) Query 288 NDALLIHDTVRAVDA--LAALQDFYHREHVTKTQILCAERRLLALFDDRKNE----LAHL 341 L++ + R +D L AL+ +T R LF +++ LA L Sbjct 207 VKVLVLDEADRLLDLGFLPALKAIVSHFSPVQTAPGSRPSRQTLLFSATQSKDLAALAKL 266 Query 342 ATHGPEN----------------------PKLEMLEKILQRQFSSSNSPRGIIFTRTRQS 379 + + P LE L S +GI+F + + Sbjct 267 SLYEPLYISCNKPGEEGVMPANLEQYYAVVPLERKLDALWGFVKSHLKMKGIVFVTSGKQ 326 Query 380 AHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATS 439 A + ++ + + L G Q + ++ Q+F LL+ T Sbjct 327 ARRV-RFIFETFRRLHPGLPLMHLHG--------KQKQPTRLDIFQRFSSSKSALLICTD 377 Query 440 VAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR--ADQSVYAFVATEGSRELKRELIN 496 VA GLD P + V++ + + + GR AR + + + +K Sbjct 378 VAARGLDFPAVDWVIQLDCPDDVDTYIHRVGRTARYQSAGTALTILCPSEEEGMKTRWGE 437 Query 497 EALE 500 +A+E Sbjct 438 KAIE 441 Score = 49.8 bits (117), Expect = 9e-05, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 47/135 (35%), Gaps = 10/135 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAY------VAKRHLETVDGAKVVVLVNRVHLV 60 Q I PAL+ ++I+ TG+GKT A + +DG VV+ L Sbjct 87 QSLAIPPALQARDILGSAKTGSGKTL-AFLIPLLERLYLEKWGPMDGLGAVVISPTRELA 145 Query 61 TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 Q + R + L P ++LI T L L S Sbjct 146 VQTFMQLRDIGKYHNFSAGLVIGGKPLKEEQERLGRMNILIATPGRLLQHLDSTVG---F 202 Query 121 ELTVFSLIVVDECHH 135 + + ++V+DE Sbjct 203 DSSAVKVLVLDEADR 217 >sp|Q0IHV9|DDX6_XENTR Probable ATP-dependent RNA helicase ddx6 OS=Xenopus tropicalis OX=8364 GN=ddx6 PE=2 SV=1 Length=481 Score = 88.7 bits (218), Expect = 3e-17, Method: Composition-based stats. Identities = 33/158 (21%), Positives = 52/158 (33%), Gaps = 15/158 (9%) Query 356 KILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHM 415 L FS + IIF + Q L + Q +G M Sbjct 322 HCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQ--------------LGYSCFYIHAKM 367 Query 416 TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA 474 Q + V F++G LV T + G+DI NVV+ + + + GR R Sbjct 368 RQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRF 427 Query 475 DQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQK 512 A + I E L T ++ +++ K Sbjct 428 GHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSSIDK 465 Score = 47.5 bits (111), Expect = 4e-04, Method: Composition-based stats. Identities = 33/167 (20%), Positives = 62/167 (37%), Gaps = 14/167 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHL---VTQ 62 Q E I AL G++I+ G GK+ A L+ + +V+V L V+Q Sbjct 122 QEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDCIQAMVIVPTRELALQVSQ 181 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 + + + G V +G R L ++I T + + ++ ++ Sbjct 182 ICIQVSKHMGG-VKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLI----KKGVAKV 236 Query 123 TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS 169 +IV+DE + IM + + Q+L +A+ Sbjct 237 DHIQMIVLDEADKLLSQD-FVQIMEDIIITLPKNR----QILLYSAT 278 >sp|Q6D3C4|UVRB_PECAS UvrABC system protein B OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) OX=218491 GN=uvrB PE=3 SV=1 Length=670 Score = 89.5 bits (220), Expect = 3e-17, Method: Composition-based stats. Identities = 51/304 (17%), Positives = 114/304 (38%), Gaps = 34/304 (11%) Query 307 QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSN 366 Q Y + ++ + ++ L + P +++ L ++ ++ Sbjct 388 QTIYVSATPSHYELEKSGGDVIDQVVRPTGLLDPIIEVRPVGTQVDDLLSEIR--LRAAI 445 Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R ++ T T++ A L +LQ+ G + + ++ E+I+ Sbjct 446 NERVLVTTLTKRMAEDLTEYLQE--------------HGERVRYLHSDIDTVERVEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + A Sbjct 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLRGKAI 551 Query 482 VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR 540 + + + + + + ++A + KI D+ Q L + A + R Sbjct 552 LYGDRITASMAKAISETERRREKQEAYNTEHGIVPQGINKKISDILQ--LGQSANKGKGR 609 Query 541 ENQRQQFPVEHVQLLCINCMVAVGHGSDLRKVEG---THHVNVNPNFSNYYNVSRDPVVI 597 N++ P +L+ + +R++E TH N+ F + + V+ Sbjct 610 GNRKAAEPAARYELMTPKALELK-----IRELESKMLTHAQNL--EFEEAAALRDEVQVL 662 Query 598 NKVF 601 F Sbjct 663 RAQF 666 >sp|A5DK47|DBP6_PICGU ATP-dependent RNA helicase DBP6 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DBP6 PE=3 SV=2 Length=631 Score = 89.5 bits (220), Expect = 3e-17, Method: Composition-based stats. Identities = 40/191 (21%), Positives = 81/191 (42%), Gaps = 18/191 (9%) Query 348 NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG 407 + K +L K L + N ++F ++ +++ L LQ + +D+ L Sbjct 448 SAKPLVLAKFLMSEQKLVN---TLVFAKSNEASLRLCRLLQLLFRVFGLDVTVSYLNSTN 504 Query 408 NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 N++ + + ++++ F + T+++LV T + G+DI V+ Y L + V Sbjct 505 NAAST-------RAKILKDFANQTVHILVVTDLIARGIDIATITNVINYDLPNSSRDYVH 557 Query 468 ARGR-ARADQSVYAFVATEGSRELKREL-------INEALETLMEQAVAAVQKMDQAEYQ 519 GR ARA+Q A+ G E K ++ + + V + D+A+Y Sbjct 558 RVGRTARANQDGEAYTMCFGKGETKWFTQLVREVSRQTEVKDVEKGFRDLVSREDEAKYD 617 Query 520 AKIRDLQQAAL 530 + +LQ+ Sbjct 618 TCLEELQRQVF 628 Score = 65.2 bits (157), Expect = 1e-09, Method: Composition-based stats. Identities = 28/119 (24%), Positives = 47/119 (39%), Gaps = 7/119 (6%) Query 20 IIIWLPTGAGKTRAAAYVAKRHLET--VDGAKVVVLVNRVHLVTQHGEEFRRMLDGRW-T 76 +++ TG+GKT A L V + +VLV L++Q F + + Sbjct 242 LLVNAATGSGKTLGYAIPIIESLRNRIVPRVRAIVLVPTKPLISQVKATFAMLSKNTNLS 301 Query 77 VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH 135 V +L D+ L D+++ T L LT+ H+ L +V+DE Sbjct 302 VVSLRSDISINDEAQRLQVVPDIIVSTPGRLVEHLTN----GHINLKSLRYLVIDEADR 356 >sp|Q1E306|ROK1_COCIM ATP-dependent RNA helicase ROK1 OS=Coccidioides immitis (strain RS) OX=246410 GN=ROK1 PE=3 SV=1 Length=730 Score = 89.5 bits (220), Expect = 3e-17, Method: Composition-based stats. Identities = 45/228 (20%), Positives = 85/228 (37%), Gaps = 35/228 (15%) Query 347 ENPKLEMLEKILQRQFSSSNS----PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQL 402 E KL L ++L +SS++ P +IFT+T A +L L DI A+ Sbjct 476 EQGKLLGLRQLLHPTSTSSSTTHLRPPFLIFTQTIARAIALHSELM-------YDIPAEA 528 Query 403 LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNE 462 + + + ++ + +V+ F+ G + +L+ T + G+D N VV Y + + Sbjct 529 GGSSRIAVLHSELSDSKRSDVMAGFRKGEIWVLITTDLLARGVDFRGINGVVNYDIPNSS 588 Query 463 ISMVQARGR----ARADQSVYAFVATEG-------------SRELKRELINEALETLMEQ 505 S V GR R F E S L+ E + + Sbjct 589 ASYVHRVGRTGRAGREGGVAVTFYTKEDIPYVKNIANVISASENLRGTEEGERIPKWLLD 648 Query 506 AVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQ 553 A+ ++ K D+ +DL++ + R + ++ + Sbjct 649 ALPSLSKNDK-------KDLKKYGVKARRPSTISDKTTSKKTRISTKS 689 Score = 58.3 bits (139), Expect = 2e-07, Method: Composition-based stats. Identities = 29/155 (19%), Positives = 51/155 (33%), Gaps = 41/155 (26%) Query 20 IIIWLPTGAGKTR---AAA--YVAKRHLETVDGAKV--VVLVNRVHLVTQHGEEFRRMLD 72 +++ PTG+GKT + K H + ++ +V+ LV Q E R++ Sbjct 237 LLVVAPTGSGKTLSFMIPLINKIMKHHHDNPGLKEILAIVVAPTKELVAQIVNEGRKLTA 296 Query 73 G----------------------RWTVTTLSGDMGPRAGFGHL------------ARCHD 98 G R GD + + D Sbjct 297 GTGVKVSAVRKGMRIVEERGQETRSLEEENDGDDSTASSDEEIHSSEGEKSKDIPLTKSD 356 Query 99 LLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC 133 +L+CT +L AL+ + + L +V+DE Sbjct 357 ILVCTPLVLANALSDGGKRDVAPLPSVQKLVLDEA 391 >sp|Q9FFQ1|RH31_ARATH DEAD-box ATP-dependent RNA helicase 31 OS=Arabidopsis thaliana OX=3702 GN=RH31 PE=2 SV=2 Length=716 Score = 89.5 bits (220), Expect = 4e-17, Method: Composition-based stats. Identities = 49/333 (15%), Positives = 105/333 (32%), Gaps = 37/333 (11%) Query 145 IMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCC 204 I P +L L P A++ N +L+ ++ ++ Sbjct 307 IEVVVKSPPTSPDNKRPPILALVICPTRELANQAATEANTLLKYHPSIGVQVVIGGTRLG 366 Query 205 PQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVK 264 + + PC+ R +D + +++ L + + K Sbjct 367 LEQKRMQTNPCQILVATPGRLKDHIENT--PGFATRLKGVKVLVLDE--ADHLLDMGFRK 422 Query 265 LSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAE 324 E A +E++ + + + + VR + +A +D V + I + Sbjct 423 DIERIISAVPKERQTFLF-------SATVPEEVRQICLVALRRDHEFVNCVHEGTIETHQ 475 Query 325 RRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLL 384 + + +A L H +L +L+ + + I+F T L+ Sbjct 476 QVRQM------HMIASLDRH------FSLLYTLLREHIMGNVDYKVIVFC-TTAMVTKLV 522 Query 385 LWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEG 444 L + L +I + Q + V +F+ +LV + V+ G Sbjct 523 ADLLGELNLNVREIH-------------SRKPQSYRTRVSNEFRKSKGLILVTSDVSARG 569 Query 445 LDIPHCNVVVRYGLLTNEISMVQARGRARADQS 477 +D P +V++ GL + + GR Sbjct 570 VDYPDVTLVLQVGLPKDREQYIHRLGRTGRKGK 602 Score = 45.9 bits (107), Expect = 0.001, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 47/134 (35%), Gaps = 15/134 (11%) Query 15 LEGKNIIIWLPTGAGKTRAAAYV------AKRHLETVDGAK----VVVLVNRVHLVTQHG 64 L+GK+++ TG GKT A + K + D + +V+ L Q Sbjct 283 LKGKDVLAKAKTGTGKT-VAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQAA 341 Query 65 EEFRRMLDGRWTVTTLSGDMGPRAGFGH---LARCHDLLICTAELLQMALTSPEEEEHVE 121 E +L ++ G R G +L+ T L+ + + Sbjct 342 TEANTLLKYHPSIGVQVVIGGTRLGLEQKRMQTNPCQILVATPGRLKDHIENTPGFA-TR 400 Query 122 LTVFSLIVVDECHH 135 L ++V+DE H Sbjct 401 LKGVKVLVLDEADH 414 >sp|Q0E2Z7|RH41_ORYSJ DEAD-box ATP-dependent RNA helicase 41 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0201900 PE=2 SV=2 Length=536 Score = 88.7 bits (218), Expect = 4e-17, Method: Composition-based stats. Identities = 49/267 (18%), Positives = 96/267 (36%), Gaps = 37/267 (14%) Query 254 GTQMYEQQVVKLSEAAALAGLQEQRVYALHLR-----RYNDALLIHDTVRAVDALAALQD 308 G QQ+ ++ L R+ L ++ D ++ + ++ Q Sbjct 248 GGDPLAQQIYRIENGIELIVGTPGRLIDLLMKHNVDLNKVDVFVLDEVDCLLERGFRDQV 307 Query 309 FYHREHVTKTQILCAERRLLALFDDRKNELAHLATH--------GPENPKL--------E 352 + ++ Q++ + + + N LA A H ++ K + Sbjct 308 MQIFQALSHPQVMMFSATVNSEVEKMSNSLAKNAIHISCGNPSRPNKSVKQVVIWVESKQ 367 Query 353 MLEKILQRQFSSSN-SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ 411 +KI + S + P ++F +R A L + GL+ V I Sbjct 368 KKQKIFEIMTSKQHFKPPAVVFVSSRIGADLLSEAITVATGLKVVSIHG----------- 416 Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 T +++E +++F G ++++V T V G+D+ V+ + + + V GR Sbjct 417 --DKTMNERRESLRRFLTGEVSVVVCTGVLGRGMDLLKVRQVILFDMPNSIDEYVHQVGR 474 Query 472 A-RADQSVYAF-VATEGSRELKRELIN 496 A R A E R L REL+ Sbjct 475 ASRMGVEGMAIVFVNEEDRNLFRELVQ 501 Score = 56.3 bits (134), Expect = 6e-07, Method: Composition-based stats. Identities = 30/193 (16%), Positives = 68/193 (35%), Gaps = 23/193 (12%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK--------VVVLVNRVH 58 Q +VI ++ +++++ TG+GKT + H V + +VL Sbjct 164 QMQVIPSSICNRSLLVSADTGSGKTASFLVPIIAHCSHVRSERCTDKQGPLAIVLAPTRE 223 Query 59 LVTQ---HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE 115 L Q + + L + + + + +L++ T L L Sbjct 224 LCLQVEEQAKVLGKGLPFKTALVVGGDPLAQQIYRIE--NGIELIVGTPGRLIDLLMKH- 280 Query 116 EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGA 175 +V+L + V+DE + + +M + +A PQV+ +A+ + Sbjct 281 ---NVDLNKVDVFVLDEVDCLLERGFRDQVMQIF------QALSHPQVMMFSATVNSEVE 331 Query 176 SKLDGAINHVLQL 188 + + + + Sbjct 332 KMSNSLAKNAIHI 344 >sp|Q465R3|HELS_METBF ATP-dependent DNA helicase Hel308 OS=Methanosarcina barkeri (strain Fusaro / DSM 804) OX=269797 GN=hel308 PE=3 SV=1 Length=729 Score = 89.5 bits (220), Expect = 4e-17, Method: Composition-based stats. Identities = 45/176 (26%), Positives = 75/176 (43%), Gaps = 12/176 (7%) Query 1 MELRSYQWEVIMPAL-EGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHL 59 MEL Q E + L EG+N++ +PT +GKT A + + + G K + +V L Sbjct 22 MELYPPQAEAVEKGLLEGRNLLAAIPTASGKTLLAELAMLKSI--LAGGKALYIVPLRAL 79 Query 60 VTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 ++ FR + V +GD R +D+++ T+E L E Sbjct 80 ASEKFRRFREFSELGIRVGISTGDYDLR---DEGLGVNDIIVATSEKTDSLL----RNET 132 Query 120 VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGA 175 V + S++V DE H D+ + KL++ P Q+L L+A+ G Sbjct 133 VWMQEISVVVADEVHLI--DSPDRGPTLEVTLAKLRKMNPSCQILALSATVGNADE 186 Score = 42.9 bits (99), Expect = 0.009, Method: Composition-based stats. Identities = 31/167 (19%), Positives = 61/167 (37%), Gaps = 25/167 (15%) Query 333 DRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQG 392 DR+ + N L+ L+K Q S+ + F +++A ++ L + Sbjct 219 DREKTVEQSTKDEAVNLALDTLKKDGQCLVFESSRKNCMAFA--KKAASTVKKTLSAEDR 276 Query 393 LQTVDIRAQLL--------------IGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT 438 I ++L I +G + +T ++ V F+ G + L+ +T Sbjct 277 NALAGIADEILENSETDTSTNLAVCIRSGTAFHHAGLTTPLRELVEDGFRAGRIKLISST 336 Query 439 SVAEEGLDIPHCNVVV-RYGLLTNEI--------SMVQARGRARADQ 476 GL++P V++ Y ++E Q GRA + Sbjct 337 PTLAAGLNLPARRVIIRNYRRYSSEDGMQPIPVLEYKQMAGRAGRPR 383 >sp|A7TJT7|SUB22_VANPO ATP-dependent RNA helicase SUB2-2 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 GN=SUB2-2 PE=3 SV=1 Length=442 Score = 87.9 bits (216), Expect = 4e-17, Method: Composition-based stats. Identities = 61/404 (15%), Positives = 122/404 (30%), Gaps = 51/404 (13%) Query 129 VVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQV---LGLTASPGTGGASKLDGAINHV 185 ++D + + + + + L Q LG TA +LD V Sbjct 73 IID----CGFEHP-SEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEV 127 Query 186 LQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLE 245 + +N + ++ K +LLK H + Sbjct 128 SVVVICNARELAYQIRNEYLRFSKYMP-DVKTAVFYGGTPITKDAELLKNKETAPHIVVA 186 Query 246 MPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAA 305 P + ++ LS + +V R + + T R + Sbjct 187 TPGRLKALVRDK----LIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVM-- 240 Query 306 LQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG--------PENPKLEMLEKI 357 +++ R L + ++ A L HG EN K L ++ Sbjct 241 ----MFSATLSEEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLQENEKNRKLAQL 296 Query 358 LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ 417 L + IIF ++ + A+ L L + +M Q Sbjct 297 LDDL----EFNQVIIFVKSTKRANELTKLLNESNFPAIT--------------VHGNMKQ 338 Query 418 RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQS 477 ++ + F++ + V+T V G+DI N+ + Y L T + GRA + Sbjct 339 AERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDLTTEADQYLHRVGRAGRFGT 398 Query 478 ---VYAFVATEGSRELK---RELINEALETLMEQAVAAVQKMDQ 515 +FV++ E+ +E + + E+ + ++ Sbjct 399 KGLAISFVSSPEDEEVLGKIQERFDVKIAEFPEEGIDPSTYLNN 442 Score = 47.5 bits (111), Expect = 3e-04, Method: Composition-based stats. Identities = 28/135 (21%), Positives = 52/135 (39%), Gaps = 14/135 (10%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQ--- 62 Q I ++ G +++ +G GKT + L+ V G VVV+ N L Q Sbjct 85 QQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVSVVVICNARELAYQIRN 144 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHD----LLICTAELLQMALTSPEEEE 118 F + + T G P L + + +++ T L+ + ++ Sbjct 145 EYLRFSKYMPDVKTAVFYGG--TPITKDAELLKNKETAPHIVVATPGRLK----ALVRDK 198 Query 119 HVELTVFSLIVVDEC 133 ++L+ V+DEC Sbjct 199 LIDLSHVKNFVIDEC 213 >sp|Q1C942|UVRB_YERPA UvrABC system protein B OS=Yersinia pestis bv. Antiqua (strain Antiqua) OX=360102 GN=uvrB PE=3 SV=1 Length=671 Score = 89.1 bits (219), Expect = 4e-17, Method: Composition-based stats. Identities = 42/254 (17%), Positives = 97/254 (38%), Gaps = 22/254 (9%) Query 307 QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSN 366 Q Y K ++ + ++ L L P +++ L ++ ++ Sbjct 388 QTIYVSATPGKYELEKSGGDIIEQVVRPTGLLDPLIEVRPVATQVDDLLSEIR--IRAAI 445 Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R ++ T T++ A L +L + GA + + ++ E+I+ Sbjct 446 NERVLVTTLTKRMAEDLTDYLSE--------------HGAKVRYLHSDIDTVERVEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + + A Sbjct 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAI 551 Query 482 VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR 540 + + + +++ + +QA +++ KI D+ Q + R Sbjct 552 LYGDRITASMEKAIGETERRRAKQQAYNEERRIIPQGLNKKIGDILQLGQPSMRGKGKGR 611 Query 541 ENQRQQFPVEHVQL 554 + + ++ L Sbjct 612 GSHKMADTTQYQSL 625 Score = 33.6 bits (75), Expect = 7.4, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 21/65 (32%), Gaps = 7/65 (11%) Query 9 EVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFR 68 E + L + ++ TG+GKT A V ++L L Q E + Sbjct 26 EGLENGLAHQTLLGV--TGSGKTFTVANVIADL-----NRPTMILAPNKTLAAQLYGEMK 78 Query 69 RMLDG 73 Sbjct 79 EFFPD 83 >sp|A4TNQ1|UVRB_YERPP UvrABC system protein B OS=Yersinia pestis (strain Pestoides F) OX=386656 GN=uvrB PE=3 SV=1 Length=671 Score = 89.1 bits (219), Expect = 4e-17, Method: Composition-based stats. Identities = 42/254 (17%), Positives = 97/254 (38%), Gaps = 22/254 (9%) Query 307 QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSN 366 Q Y K ++ + ++ L L P +++ L ++ ++ Sbjct 388 QTIYVSATPGKYELEKSGGDIIEQVVRPTGLLDPLIEVRPVATQVDDLLSEIR--IRAAI 445 Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R ++ T T++ A L +L + GA + + ++ E+I+ Sbjct 446 NERVLVTTLTKRMAEDLTDYLSE--------------HGAKVRYLHSDIDTVERVEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + + A Sbjct 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAI 551 Query 482 VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR 540 + + + +++ + +QA +++ KI D+ Q + R Sbjct 552 LYGDRITASMEKAIGETERRRAKQQAYNEERRIIPQGLNKKIGDILQLGQPSMRGKGKGR 611 Query 541 ENQRQQFPVEHVQL 554 + + ++ L Sbjct 612 GSHKMADTTQYQSL 625 Score = 33.6 bits (75), Expect = 7.4, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 21/65 (32%), Gaps = 7/65 (11%) Query 9 EVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFR 68 E + L + ++ TG+GKT A V ++L L Q E + Sbjct 26 EGLENGLAHQTLLGV--TGSGKTFTVANVIADL-----NRPTMILAPNKTLAAQLYGEMK 78 Query 69 RMLDG 73 Sbjct 79 EFFPD 83 >sp|Q1CFQ8|UVRB_YERPN UvrABC system protein B OS=Yersinia pestis bv. Antiqua (strain Nepal516) OX=377628 GN=uvrB PE=3 SV=1 Length=671 Score = 89.1 bits (219), Expect = 4e-17, Method: Composition-based stats. Identities = 42/254 (17%), Positives = 97/254 (38%), Gaps = 22/254 (9%) Query 307 QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSN 366 Q Y K ++ + ++ L L P +++ L ++ ++ Sbjct 388 QTIYVSATPGKYELEKSGGDIIEQVVRPTGLLDPLIEVRPVATQVDDLLSEIR--IRAAI 445 Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R ++ T T++ A L +L + GA + + ++ E+I+ Sbjct 446 NERVLVTTLTKRMAEDLTDYLSE--------------HGAKVRYLHSDIDTVERVEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + + A Sbjct 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAI 551 Query 482 VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR 540 + + + +++ + +QA +++ KI D+ Q + R Sbjct 552 LYGDRITASMEKAIGETERRRAKQQAYNEERRIIPQGLNKKIGDILQLGQPSMRGKGKGR 611 Query 541 ENQRQQFPVEHVQL 554 + + ++ L Sbjct 612 GSHKMADTTQYQSL 625 Score = 33.6 bits (75), Expect = 7.4, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 21/65 (32%), Gaps = 7/65 (11%) Query 9 EVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFR 68 E + L + ++ TG+GKT A V ++L L Q E + Sbjct 26 EGLENGLAHQTLLGV--TGSGKTFTVANVIADL-----NRPTMILAPNKTLAAQLYGEMK 78 Query 69 RMLDG 73 Sbjct 79 EFFPD 83 >sp|A9R3D3|UVRB_YERPG UvrABC system protein B OS=Yersinia pestis bv. Antiqua (strain Angola) OX=349746 GN=uvrB PE=3 SV=1 Length=671 Score = 89.1 bits (219), Expect = 4e-17, Method: Composition-based stats. Identities = 42/254 (17%), Positives = 97/254 (38%), Gaps = 22/254 (9%) Query 307 QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSN 366 Q Y K ++ + ++ L L P +++ L ++ ++ Sbjct 388 QTIYVSATPGKYELEKSGGDIIEQVVRPTGLLDPLIEVRPVATQVDDLLSEIR--IRAAI 445 Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R ++ T T++ A L +L + GA + + ++ E+I+ Sbjct 446 NERVLVTTLTKRMAEDLTDYLSE--------------HGAKVRYLHSDIDTVERVEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + + A Sbjct 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAI 551 Query 482 VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR 540 + + + +++ + +QA +++ KI D+ Q + R Sbjct 552 LYGDRITASMEKAIGETERRRAKQQAYNEERRIIPQGLNKKIGDILQLGQPSMRGKGKGR 611 Query 541 ENQRQQFPVEHVQL 554 + + ++ L Sbjct 612 GSHKMADTTQYQSL 625 Score = 33.6 bits (75), Expect = 7.4, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 21/65 (32%), Gaps = 7/65 (11%) Query 9 EVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFR 68 E + L + ++ TG+GKT A V ++L L Q E + Sbjct 26 EGLENGLAHQTLLGV--TGSGKTFTVANVIADL-----NRPTMILAPNKTLAAQLYGEMK 78 Query 69 RMLDG 73 Sbjct 79 EFFPD 83 >sp|Q8ZGW7|UVRB_YERPE UvrABC system protein B OS=Yersinia pestis OX=632 GN=uvrB PE=3 SV=1 Length=671 Score = 89.1 bits (219), Expect = 4e-17, Method: Composition-based stats. Identities = 42/254 (17%), Positives = 97/254 (38%), Gaps = 22/254 (9%) Query 307 QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSN 366 Q Y K ++ + ++ L L P +++ L ++ ++ Sbjct 388 QTIYVSATPGKYELEKSGGDIIEQVVRPTGLLDPLIEVRPVATQVDDLLSEIR--IRAAI 445 Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R ++ T T++ A L +L + GA + + ++ E+I+ Sbjct 446 NERVLVTTLTKRMAEDLTDYLSE--------------HGAKVRYLHSDIDTVERVEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + + A Sbjct 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAI 551 Query 482 VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR 540 + + + +++ + +QA +++ KI D+ Q + R Sbjct 552 LYGDRITASMEKAIGETERRRAKQQAYNEERRIIPQGLNKKIGDILQLGQPSMRGKGKGR 611 Query 541 ENQRQQFPVEHVQL 554 + + ++ L Sbjct 612 GSHKMADTTQYQSL 625 Score = 33.6 bits (75), Expect = 7.4, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 21/65 (32%), Gaps = 7/65 (11%) Query 9 EVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFR 68 E + L + ++ TG+GKT A V ++L L Q E + Sbjct 26 EGLENGLAHQTLLGV--TGSGKTFTVANVIADL-----NRPTMILAPNKTLAAQLYGEMK 78 Query 69 RMLDG 73 Sbjct 79 EFFPD 83 >sp|O29889|XPB_ARCFU DNA 3'-5' translocase XPB OS=Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16) OX=224325 GN=xpb PE=1 SV=1 Length=452 Score = 87.9 bits (216), Expect = 4e-17, Method: Composition-based stats. Identities = 39/169 (23%), Positives = 58/169 (34%), Gaps = 33/169 (20%) Query 1 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV 60 + LR YQ + + L K I LPTG+GKT A +++V + L Sbjct 72 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELSTPT-----LIVVPTLALA 126 Query 61 TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 Q E + G+ R + L + T + A + E+ Sbjct 127 EQWKERLGIFGE------EYVGEFSGR-----IKELKPLTVSTYD---SAYVNAEKLG-- 170 Query 121 ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS 169 F L++ DE HH + Y I P LGLTA+ Sbjct 171 --NRFMLLIFDEVHHLPAE-SYVQIAQ---------MSIAPFRLGLTAT 207 Score = 76.4 bits (186), Expect = 2e-13, Method: Composition-based stats. Identities = 45/269 (17%), Positives = 88/269 (33%), Gaps = 40/269 (15%) Query 209 EHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPE------LSRKFGTQMYEQQV 262 E P + Y + S PF L ++ E+ + + F + + + Sbjct 180 EVHHLPAESYVQIAQMSIAPFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHL 239 Query 263 VKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILC 322 K + L E R + R + L +DF K + Sbjct 240 AKYTIKRIFVPLAEDERVEYEKREKVYKQFLR--ARGI-TLRRAEDF------NKIVMAS 290 Query 323 AERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHS 382 E +A + K+ L +IL+R + IIFTR + + Sbjct 291 GYDERAYEALRAWEEARRIAFNSKN--KIRKLREILERH----RKDKIIIFTRHNELVYR 344 Query 383 LLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAE 442 + + + ++ +++E+++ F+ G +V++ V + Sbjct 345 ISKVFL-------------------IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLD 385 Query 443 EGLDIPHCNVVVRYGLLTNEISMVQARGR 471 EG+D+P NV V + +Q GR Sbjct 386 EGIDVPDANVGVIMSGSGSAREYIQRLGR 414 >sp|Q7W8V6|UVRB_BORPA UvrABC system protein B OS=Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253) OX=257311 GN=uvrB PE=3 SV=1 Length=675 Score = 89.1 bits (219), Expect = 4e-17, Method: Composition-based stats. Identities = 82/564 (15%), Positives = 174/564 (31%), Gaps = 114/564 (20%) Query 26 TGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRR---------------- 69 TG+GKT A + R G +VL L Q E R Sbjct 50 TGSGKTYTMANMIARL-----GRPALVLAPNKTLAAQLYAEMREFFPRNAVEYFVSYYDY 104 Query 70 ------------MLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE 117 ++ ++ M A L R +++ T + + Sbjct 105 YQPEAYVPTRDLFIEKDSSINEHIEQMRLSATKSLLERRDTVIVGTVSCIYGIGNPGDYH 164 Query 118 EHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASK 177 V + + + ++ + ++ QY + + +V G T + + Sbjct 165 AMVLILRTGDRI------SRREVLARLVAMQYTRNDADFTRGVFRVRGETIDIFPAESPE 218 Query 178 LDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLM 237 L + +L+ + ++ + +L + P Y + ++L Sbjct 219 LALRLTLFDDEIESLELFDPLTGR-VRQKLPRFTVYPGSHYVTPRETVLRAIETIKEELR 277 Query 238 DQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND-------- 289 +++ + +L ++ ++ L L + Y+ HL Sbjct 278 ERLAQLIADGKLVE--AQRLEQRTRFDLEMLQELGFCKGIENYSRHLSGAAPGEPPPTLI 335 Query 290 ALLIHDTVRAVDA----LAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATH- 344 L D + +D + L Y + K ++ RL + D+R L Sbjct 336 DYLPADALMFIDESHVTIGQLGGMYRGDRSRKETLVQYGFRLPSALDNRPLRLEEFEARM 395 Query 345 --------------------------------------GPENPKLEMLEKILQRQFSSSN 366 P + +++ L + + ++ Sbjct 396 RQCVFVSATPAAYEQEHADNVVEQVVRPTGLVDPIVEVRPAHTQVDDLLGEIHK--RAAL 453 Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 R ++ T T++ A L +L + G + + ++ E+I+ Sbjct 454 QERVLVTTLTKRMAEDLTDFLSE--------------HGVRVRYLHSDIDTVERVEIIRD 499 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV S+ EGLDIP ++V L +E S++Q GRA + + A Sbjct 500 LRLGVFDVLVGISLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGRAI 559 Query 482 VATEGSRELKRELINEALETLMEQ 505 + + + R I+E +Q Sbjct 560 LYADRITDSMRRAIDETERRRAKQ 583 >sp|Q18212|DX39B_CAEEL Spliceosome RNA helicase DDX39B homolog OS=Caenorhabditis elegans OX=6239 GN=hel-1 PE=1 SV=1 Length=425 Score = 87.9 bits (216), Expect = 4e-17, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 57/173 (33%), Gaps = 19/173 (11%) Query 324 ERRLLALFDDRKNELAHLATHG----PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQS 379 +R + + ++ A L HG K + L + + +IF + + Sbjct 236 KRFMQDPMEVYVDDEAKLTLHGLQQHYVKLKEAEKNRRLLNLLDALEFNQVVIFVKAVKR 295 Query 380 AHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATS 439 +L L +Q + M Q ++ Q F+D +LVAT Sbjct 296 CEALHQLLTEQNFPSI--------------AIHRQMAQEERLSRYQAFKDFQKRILVATD 341 Query 440 VAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARA-DQSVYAFVATEGSRELK 491 + G+DI N+V Y + + S + RA A + K Sbjct 342 LFGRGMDIERVNIVFNYDMPEDSDSYLHRVARAGRFGTKGLAITFVSDENDAK 394 Score = 53.3 bits (126), Expect = 5e-06, Method: Composition-based stats. Identities = 38/168 (23%), Positives = 65/168 (39%), Gaps = 14/168 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQ--- 62 Q E I A+ G +++ +G GKT + LE VDG VV + + L Q Sbjct 68 QHECIPQAILGMDVVCQAKSGMGKTAVFVITTLQQLEPVDGEVSVVCMCHTRELAFQISK 127 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCH-DLLICTAELLQMALTSPEEEEHVE 121 E F + L G V G M + LA +++ T + + ++ Sbjct 128 EYERFSKYLPG-VKVAVFFGGMAIKKDEERLANDCPHIVVGTPGRML----ALARSGKLK 182 Query 122 LTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS 169 L V+DEC D + + +++ Q+ QV+ +A+ Sbjct 183 LDKVKYFVLDECDKMIGDADMRRDVQEIVKMTPQQK----QVMMFSAT 226 >sp|C6DDU0|UVRB_PECCP UvrABC system protein B OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) OX=561230 GN=uvrB PE=3 SV=1 Length=670 Score = 89.1 bits (219), Expect = 5e-17, Method: Composition-based stats. Identities = 47/274 (17%), Positives = 105/274 (38%), Gaps = 34/274 (12%) Query 337 ELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTV 396 L L P +++ L +++ ++ + R ++ T T++ A L +L++ Sbjct 418 LLDPLIEVRPVATQVDDLLSEIRQ--RAAVNERVLVTTLTKRMAEDLTEYLEE------- 468 Query 397 DIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY 456 G + + ++ E+I+ + G ++LV ++ EGLD+P ++V Sbjct 469 -------HGERVRYLHSDIDTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAIL 521 Query 457 G-----LLTNEISMVQARGRARADQSVYAFVATEG-SRELKRELINEALETLMEQAVAAV 510 L +E S++Q GRA + A + + + + + + ++A Sbjct 522 DADKEGFLRSERSLIQTIGRAARNLRGKAILYGDKITPSMAKAIGETERRREKQEAYNTE 581 Query 511 QKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQLLCINCMVAVGHGSDLR 570 + KI D+ Q L + + R N++ P +L+ + +R Sbjct 582 HGIVPQGLNKKISDILQ--LGQPTNRGKGRGNRKAAEPAARYELMTPKALELK-----IR 634 Query 571 KVEG---THHVNVNPNFSNYYNVSRDPVVINKVF 601 ++E TH N+ F + + + F Sbjct 635 ELESKMLTHAQNL--EFEEAAALRDELQALRAQF 666 >sp|A3D001|RAPA_SHEB5 RNA polymerase-associated protein RapA OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) OX=325240 GN=rapA PE=3 SV=1 Length=968 Score = 89.5 bits (220), Expect = 5e-17, Method: Composition-based stats. Identities = 75/452 (17%), Positives = 150/452 (33%), Gaps = 40/452 (9%) Query 27 GAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGP 86 G GKT A + + L T +++++V L Q E R + R++V + Sbjct 179 GLGKTIEAGLIIHQQLLTGRAERILIIVPD-TLRHQWLVEMLRRFNLRFSVFDEDRCVEA 237 Query 87 RAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHT--HKDTVYNV 144 A + L+IC+ L + + + L+VVDE HH ++ Sbjct 238 YADHDNPFYTEQLVICS----LELLRKKKRLDQALDADWDLLVVDEAHHLEWTEEAPSRA 293 Query 145 IMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCC 204 ++ ++ +P VL LTA+P G +H +L LD + Sbjct 294 -----YQVVEALSEVIPGVLLLTATP------DQLGHESHFARL-RLLDPDRFY---DYD 338 Query 205 PQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVK 264 L E D + ++ ++ R + +V + Sbjct 339 AFLAEEDSYKDVAIAAEALAGNTKLPDAAINSLTELLGEKDISPSIRLIQADGIDAEVQQ 398 Query 265 LSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAE 324 + + L L ++ L R + A + R +A ++ + ++ Sbjct 399 AARSELLQELLDRHGTGRVLYRNSRASVKGFPKRFFNAYPHAMPDQYQTAARVSGMMGGH 458 Query 325 RRL---LALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAH 381 + L A + + K + L S S + +I ++A Sbjct 459 KSLEAKAAQALSPEKLYQEFEDNSASWWKFDPRVDWLIEFLKSHRSKKVLIIASQAETAL 518 Query 382 SLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF--QDGTLNLLVATS 439 SL L+ ++G+Q M+ ++ + F ++G L+ + Sbjct 519 SLEEALRTREGIQATVFH-------------EGMSIIERDKAGAYFAQEEGGAQALICSE 565 Query 440 VAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 + EG + + +V + L N + Q GR Sbjct 566 IGSEGRNFQFASHLVLFDLPLNPDLLEQRIGR 597 >sp|Q8SQM5|IF4A_ENCCU ATP-dependent RNA helicase eIF4A OS=Encephalitozoon cuniculi (strain GB-M1) OX=284813 GN=TIF1 PE=1 SV=1 Length=425 Score = 87.5 bits (215), Expect = 5e-17, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 72/185 (39%), Gaps = 27/185 (15%) Query 330 LFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQ 389 D RK PKL L I F + I+F +++ A + WL + Sbjct 257 FIDLRKEPPFRKGREDYLLPKLVTLYDI----FRKQRLGQSIVFINSKEDARIVYDWLIR 312 Query 390 QQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPH 449 + +L+ S +TQ +++ + +F+ GT L+++ + G+DI + Sbjct 313 HE------WECELI--------SAELTQAERERTLNRFRGGTGRCLISSGLLSRGIDIQN 358 Query 450 CNVVVRYGLLTNEI--SMVQARGR-ARADQSVYAFVATEGSRELKRELIN-EALETLMEQ 505 +VV + + E + + GR R + A + + EL N +A+E Sbjct 359 LSVVFCLDVPSFERKSTYIHRIGRSGRYGRKGIAI-----NIVYEHELKNLKAIERFYNT 413 Query 506 AVAAV 510 + + Sbjct 414 TIKEL 418 Score = 48.6 bits (114), Expect = 1e-04, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 51/131 (39%), Gaps = 10/131 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT---RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQH 63 Q I P ++G++I +G GKT AA + D +++VL + + Q+ Sbjct 65 QKAAIQPIIDGRDIRAQAQSGTGKTGAFAVAALQICDMSQ--DVTQILVLASTREIAAQN 122 Query 64 GEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 F + V LSG A L + +++ T ++ + E + + Sbjct 123 AARFEDLGCFMGARVALLSGGSPIAADKVALEKKPHIVVGTPGRVEHMININE----LSM 178 Query 123 TVFSLIVVDEC 133 L V+DE Sbjct 179 DNIKLFVIDEA 189 >sp|A5DUB2|MAK5_LODEL ATP-dependent RNA helicase MAK5 OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) OX=379508 GN=MAK5 PE=3 SV=1 Length=855 Score = 89.1 bits (219), Expect = 5e-17, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 47/121 (39%), Gaps = 19/121 (16%) Query 370 GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD 429 ++F + S L+ L + + M Q+ + +++F+D Sbjct 527 TLVFANSIDSVKRLVPLLNNLNIPAF--------------AIHSSMIQKQRLRSLERFKD 572 Query 430 ----GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVAT 484 +LVA+ VA GLDIP+ + V Y L + + GR ARA + + + Sbjct 573 ASEKNQTAVLVASDVAARGLDIPNIDHVAHYHLPRSADVYIHRSGRTARAGKEGVSVMFC 632 Query 485 E 485 Sbjct 633 S 633 Score = 50.2 bits (118), Expect = 6e-05, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 61/143 (43%), Gaps = 18/143 (13%) Query 14 ALEGKNIIIWLPTGAGKTRAA-AYVAKRHLETVD--GAKV----------VVLVNRVHLV 60 ALEGK++I TG+GKT A + +++++++D KV ++ L Sbjct 253 ALEGKDVIGKATTGSGKTLAYGIPILEKYIQSLDTVKRKVREKVVNHPTGIIFAPTRELA 312 Query 61 TQHGEEFRRMLDGRWTVTT----LSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE 116 Q + ++ T ++G + + L+ +++ T + L ++ Sbjct 313 HQVVDHLNKIAQYSPLSTKGIVSVTGGLSIQKQERLLSFGPGIIVATPGRMLE-LCQNDQ 371 Query 117 EEHVELTVFSLIVVDECHHTHKD 139 E L++ +IV+DE +D Sbjct 372 ELVKRLSMTDIIVLDEADRLLQD 394 >sp|Q8VDW0|DX39A_MOUSE ATP-dependent RNA helicase DDX39A OS=Mus musculus OX=10090 GN=Ddx39a PE=1 SV=1 Length=427 Score = 87.5 bits (215), Expect = 5e-17, Method: Composition-based stats. Identities = 33/199 (17%), Positives = 70/199 (35%), Gaps = 29/199 (15%) Query 310 YHREHVTKTQILCAERRLLALFDDRKNELAHLATHG--------PENPKLEMLEKILQRQ 361 ++K + + + ++ L HG ++ K L +L Sbjct 225 MFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVL 284 Query 362 FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ 421 + +IF ++ Q +L L +Q + M Q ++ Sbjct 285 ----EFNQVVIFVKSVQRCMALAQLLVEQNFPAI--------------AIHRGMAQEERL 326 Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQS---V 478 Q+F+D +LVAT++ G+DI N+V Y + + + + RA + Sbjct 327 SRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLA 386 Query 479 YAFVATEGSRELKRELINE 497 FV+ E ++ ++ + Sbjct 387 VTFVSDENDAKILNDVQDR 405 Score = 47.5 bits (111), Expect = 3e-04, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 51/132 (39%), Gaps = 10/132 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQ--- 62 Q E I A+ G +++ +G GKT + +E V+G V+V+ + L Q Sbjct 71 QHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVSVLVMCHTRELAFQISK 130 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCH-DLLICTAELLQMALTSPEEEEHVE 121 E F + + V+ G + + L + +++ T + + + Sbjct 131 EYERFSKYMP-SVKVSVFFGGLSIKKDEDVLKKNCPHVVVGTP----GRILALVRSRSLN 185 Query 122 LTVFSLIVVDEC 133 L V+DEC Sbjct 186 LRNVKHFVLDEC 197 >sp|A9L3Y2|RAPA_SHEB9 RNA polymerase-associated protein RapA OS=Shewanella baltica (strain OS195) OX=399599 GN=rapA PE=3 SV=1 Length=968 Score = 89.1 bits (219), Expect = 5e-17, Method: Composition-based stats. Identities = 75/452 (17%), Positives = 150/452 (33%), Gaps = 40/452 (9%) Query 27 GAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGP 86 G GKT A + + L T +++++V L Q E R + R++V + Sbjct 179 GLGKTIEAGLIIHQQLLTGRAERILIIVPD-TLRHQWLVEMLRRFNLRFSVFDEDRCVEA 237 Query 87 RAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHT--HKDTVYNV 144 A + L+IC+ L + + + L+VVDE HH ++ Sbjct 238 YADHDNPFYTEQLVICS----LELLRKKKRLDQALDADWDLLVVDEAHHLEWTEEAPSRA 293 Query 145 IMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCC 204 ++ ++ +P VL LTA+P G +H +L LD + Sbjct 294 -----YQVVEALSEVIPGVLLLTATP------DQLGHESHFARL-RLLDPDRFY---DYD 338 Query 205 PQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVK 264 L E D + ++ ++ R + +V + Sbjct 339 AFLAEEDSYKDVAIAAEALAGNAKLPDAAINSLTELLGEKDISPSIRLIQADGIDAEVQQ 398 Query 265 LSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAE 324 + + L L ++ L R + A + R +A ++ + ++ Sbjct 399 AARSELLQELLDRHGTGRVLYRNSRASVKGFPKRFFNAYPHAMPDQYQTAARVSGMMGGH 458 Query 325 RRL---LALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAH 381 + L A + + K + L S S + +I ++A Sbjct 459 KSLEAKAAQALSPEKLYQEFEDNSASWWKFDPRVDWLIEFLKSHRSKKVLIIASQAETAL 518 Query 382 SLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF--QDGTLNLLVATS 439 SL L+ ++G+Q M+ ++ + F ++G L+ + Sbjct 519 SLEEALRTREGIQATVFH-------------EGMSIIERDKAGAYFAQEEGGAQALICSE 565 Query 440 VAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 + EG + + +V + L N + Q GR Sbjct 566 IGSEGRNFQFASHLVLFDLPLNPDLLEQRIGR 597 >sp|B8ECC6|RAPA_SHEB2 RNA polymerase-associated protein RapA OS=Shewanella baltica (strain OS223) OX=407976 GN=rapA PE=3 SV=1 Length=968 Score = 89.1 bits (219), Expect = 5e-17, Method: Composition-based stats. Identities = 75/452 (17%), Positives = 150/452 (33%), Gaps = 40/452 (9%) Query 27 GAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGP 86 G GKT A + + L T +++++V L Q E R + R++V + Sbjct 179 GLGKTIEAGLIIHQQLLTGRAERILIIVPD-TLRHQWLVEMLRRFNLRFSVFDEDRCVEA 237 Query 87 RAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHT--HKDTVYNV 144 A + L+IC+ L + + + L+VVDE HH ++ Sbjct 238 YADHDNPFYTEQLVICS----LELLRKKKRLDQALDADWDLLVVDEAHHLEWTEEAPSRA 293 Query 145 IMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCC 204 ++ ++ +P VL LTA+P G +H +L LD + Sbjct 294 -----YQVVEALSEVIPGVLLLTATP------DQLGHESHFARL-RLLDPDRFY---DYD 338 Query 205 PQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVK 264 L E D + ++ ++ R + +V + Sbjct 339 AFLAEEDSYKDVAIAAEALAGNAKLPDAAINSLTELLGEKDISPSIRLIQADGIDAEVQQ 398 Query 265 LSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAE 324 + + L L ++ L R + A + R +A ++ + ++ Sbjct 399 AARSELLQELLDRHGTGRVLYRNSRASVKGFPKRFFNAYPHAMPDQYQTAARVSGMMGGH 458 Query 325 RRL---LALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAH 381 + L A + + K + L S S + +I ++A Sbjct 459 KSLEAKAAQALSPEKLYQEFEDNSASWWKFDPRVDWLIEFLKSHRSKKVLIIASQAETAL 518 Query 382 SLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF--QDGTLNLLVATS 439 SL L+ ++G+Q M+ ++ + F ++G L+ + Sbjct 519 SLEEALRTREGIQATVFH-------------EGMSIIERDKAGAYFAQEEGGAQALICSE 565 Query 440 VAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 + EG + + +V + L N + Q GR Sbjct 566 IGSEGRNFQFASHLVLFDLPLNPDLLEQRIGR 597 >sp|A6WSX5|RAPA_SHEB8 RNA polymerase-associated protein RapA OS=Shewanella baltica (strain OS185) OX=402882 GN=rapA PE=3 SV=1 Length=968 Score = 89.1 bits (219), Expect = 5e-17, Method: Composition-based stats. Identities = 75/452 (17%), Positives = 151/452 (33%), Gaps = 40/452 (9%) Query 27 GAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGP 86 G GKT A + + L T +++++V L Q E R + R++V + Sbjct 179 GLGKTIEAGLIIHQQLLTGRAERILIIVPD-TLRHQWLVEMLRRFNLRFSVFDEDRCVEA 237 Query 87 RAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHT--HKDTVYNV 144 A + L+IC+ L + + + L+VVDE HH ++ Sbjct 238 YADHDNPFYTEQLVICS----LELLRKKKRLDQALDADWDLLVVDEAHHLEWTEEAPSRA 293 Query 145 IMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCC 204 ++ ++ +P VL LTA+P G +H +L LD + Sbjct 294 -----YQVVEALSEVIPGVLLLTATP------DQLGHESHFARL-RLLDPDRFY---DYD 338 Query 205 PQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVK 264 L E D + ++ ++ R + + +V + Sbjct 339 AFLAEEDSYKDVAIAAEALAGNAKLPDAAINSLTELLGEKDISPSIRLIQAEGIDAEVQQ 398 Query 265 LSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAE 324 + + L L ++ L R + A + R +A ++ + ++ Sbjct 399 AARSELLQELLDRHGTGRVLYRNSRASVKGFPKRFFNAYPHAMPDQYQTAARVSGMMGGH 458 Query 325 RRL---LALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAH 381 + L A + + K + L S S + +I ++A Sbjct 459 KSLEAKAAQALSPEKLYQEFEDNSASWWKFDPRVDWLIEFLKSHRSKKVLIIASQAETAL 518 Query 382 SLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF--QDGTLNLLVATS 439 SL L+ ++G+Q M+ ++ + F ++G L+ + Sbjct 519 SLEEALRTREGIQATVFH-------------EGMSIIERDKAGAYFAQEEGGAQALICSE 565 Query 440 VAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 + EG + + +V + L N + Q GR Sbjct 566 IGSEGRNFQFASHLVLFDLPLNPDLLEQRIGR 597 >sp|Q2L244|UVRB_BORA1 UvrABC system protein B OS=Bordetella avium (strain 197N) OX=360910 GN=uvrB PE=3 SV=1 Length=676 Score = 88.7 bits (218), Expect = 5e-17, Method: Composition-based stats. Identities = 85/563 (15%), Positives = 171/563 (30%), Gaps = 112/563 (20%) Query 26 TGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRR---------------- 69 TG+GKT A V R G +VL L Q E R Sbjct 50 TGSGKTFTMANVIARL-----GRPALVLAPNKTLAAQLYAEMRDFFPKNAVEYFVSYYDY 104 Query 70 ------------MLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE 117 ++ +V M A L R +++ T + + Sbjct 105 YQPEAYVPTRDLFIEKDSSVNEHIEQMRLSATKSLLERRDTIIVGTVSCIYGIGNPGDYH 164 Query 118 EHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASK 177 V + + + ++ + ++ QY + +V G T + + Sbjct 165 AMVLILRAGDRI------SRREVLARLVAMQYTRNDADFTRGAFRVRGETIDIFPAESPE 218 Query 178 LDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLM 237 L + L+ + ++ +L + P Y + ++L Sbjct 219 LALRLTLFDDEVETLELFDPLT-GKVRQKLPRFTVYPGSHYVTPRETVLRAIETIREELR 277 Query 238 DQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQ-RVYALHLRRYND------- 289 +++ + Q EQ+ E G + Y+ HL Sbjct 278 ERLSTF---TNEGKLLEAQRIEQRTRFDLEMLQELGFCKGIENYSRHLSGAAPGEPPPTL 334 Query 290 -ALLIHDTVRAVDA----LAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATH 344 L D + +D + L Y + K ++ RL + D+R L Sbjct 335 IDYLPADALMFIDESHVTVGQLGGMYRGDRARKETLVQYGFRLPSALDNRPLRLEEFEAR 394 Query 345 ------------------------------GPENPKLEM------LEKILQRQFSS-SNS 367 G +P++E+ ++ +L + Sbjct 395 MRQCVFVSATPADYERQHADNVVEQVVRPTGLVDPEVEVRPAHTQVDDLLGEIRHRVARQ 454 Query 368 PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF 427 R ++ T T++ + L +L + G + + ++ E+I+ Sbjct 455 ERVLVTTLTKRMSEDLTDFLAE--------------HGVRVRYLHSDIDTVERVEIIRDL 500 Query 428 QDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAFV 482 + G ++LV ++ EGLDIP ++V L +E S++Q GRA + +A + Sbjct 501 RLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLHGHAIL 560 Query 483 ATEGSRELKRELINEALETLMEQ 505 + + R ++E +Q Sbjct 561 YADRITDSMRRAMDETSRRRSKQ 583 >sp|Q5U216|DX39A_RAT ATP-dependent RNA helicase DDX39A OS=Rattus norvegicus OX=10116 GN=Ddx39a PE=2 SV=1 Length=427 Score = 87.5 bits (215), Expect = 5e-17, Method: Composition-based stats. Identities = 33/199 (17%), Positives = 70/199 (35%), Gaps = 29/199 (15%) Query 310 YHREHVTKTQILCAERRLLALFDDRKNELAHLATHG--------PENPKLEMLEKILQRQ 361 ++K + + + ++ L HG ++ K L +L Sbjct 225 MFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVL 284 Query 362 FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ 421 + +IF ++ Q +L L +Q + M Q ++ Sbjct 285 ----EFNQVVIFVKSVQRCMALAQLLVEQNFPAI--------------AIHRGMAQEERL 326 Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQS---V 478 Q+F+D +LVAT++ G+DI N+V Y + + + + RA + Sbjct 327 SRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLA 386 Query 479 YAFVATEGSRELKRELINE 497 FV+ E ++ ++ + Sbjct 387 VTFVSDENDAKILNDVQDR 405 Score = 47.5 bits (111), Expect = 3e-04, Method: Composition-based stats. Identities = 26/132 (20%), Positives = 51/132 (39%), Gaps = 10/132 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQ--- 62 Q E I A+ G +++ +G GKT + +E ++G V+V+ + L Q Sbjct 71 QHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPINGQVSVLVMCHTRELAFQISK 130 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCH-DLLICTAELLQMALTSPEEEEHVE 121 E F + + V+ G + + L + +++ T + + + Sbjct 131 EYERFSKYMP-SVKVSVFFGGLSIKKDEDVLKKNCPHVVVGTP----GRILALVRSRSLN 185 Query 122 LTVFSLIVVDEC 133 L V+DEC Sbjct 186 LRNVKHFVLDEC 197 >sp|Q6FNA2|DBP10_CANGA ATP-dependent RNA helicase DBP10 OS=Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DBP10 PE=3 SV=1 Length=969 Score = 89.1 bits (219), Expect = 5e-17, Method: Composition-based stats. Identities = 48/280 (17%), Positives = 94/280 (34%), Gaps = 38/280 (14%) Query 218 YNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQ--------VVKLSEAA 269 ++ R + F + L +L+ + + S T + + +V+L + Sbjct 265 FDEADRLFEMGFQEQLNELLAALPSSRQTLLFSATLPTSLVDFAKAGLVNPVLVRLDAES 324 Query 270 ALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLA 329 ++ E ++ +A L++ ++ V L ++ E A Sbjct 325 KISDNLE-MLFLSTKNDEREANLLY-ILQEVIKLPLATPEQIKQLNDNKADDSDES---A 379 Query 330 LFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQ 389 D+ K + + PK L + ++F TR L L+ Sbjct 380 EEDEDKKRRKRKSFNRKAMPKANEL----------PSEKATVVFVPTRHHVEYLSNLLKD 429 Query 390 QQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPH 449 L+ + + Q ++ + F+ G ++LV T VA G+DIP Sbjct 430 ----------CGYLVSYIYGA----LDQHARKSQLYNFRIGLTSILVVTDVAARGVDIPM 475 Query 450 CNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSR 488 VV Y L + + GR ARA +A+ + Sbjct 476 LANVVNYSLPASSKIFIHRVGRTARAGNRGWAYSIVSENE 515 Score = 55.6 bits (132), Expect = 1e-06, Method: Composition-based stats. Identities = 48/252 (19%), Positives = 82/252 (33%), Gaps = 31/252 (12%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA---KVVVLVNRVHLVTQHGEEFRRML 71 L+ ++I+ TG+GKT A L+T + ++L L Q F+ Sbjct 150 LQNRDIVGMARTGSGKTAAFVLPMIEKLKTHSSKIGARAIILSPSRELAMQTHSVFKEFS 209 Query 72 DG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVV 130 G L+G FG + D++I T + E +++L V Sbjct 210 RGTHLRSVLLTGGDSLEDQFGMMMTNPDVIIATPGRFLH----LKVEMNLDLKSVEYAVF 265 Query 131 DECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS-PGTGGASKLDGAINHVLQLC 189 DE + + + L L Q L +A+ P + G +N VL Sbjct 266 DEADRL-----FEMGFQEQLNELLAALPSSRQTLLFSATLPTSLVDFAKAGLVNPVLV-- 318 Query 190 ANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPEL 249 LD +S L ++ + +LL L + I L PE Sbjct 319 -RLDAESKISDNLEMLFLST--------------KNDEREANLLYILQEVIKLPLATPEQ 363 Query 250 SRKFGTQMYEQQ 261 ++ + Sbjct 364 IKQLNDNKADDS 375 >sp|B1JSR9|UVRB_YERPY UvrABC system protein B OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) OX=502800 GN=uvrB PE=3 SV=1 Length=671 Score = 88.7 bits (218), Expect = 6e-17, Method: Composition-based stats. Identities = 42/254 (17%), Positives = 96/254 (38%), Gaps = 22/254 (9%) Query 307 QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSN 366 Q Y K ++ + ++ L L P +++ L ++ ++ Sbjct 388 QTIYVSATPGKYELEKSGGDIIEQVVRPTGLLDPLIEVRPVATQVDDLLSEIR--IRAAI 445 Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R ++ T T++ A L +L + GA + + ++ E+I+ Sbjct 446 NERVLVTTLTKRMAEDLTDYLSE--------------HGAKVRYLHSDIDTVERVEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + + A Sbjct 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAI 551 Query 482 VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR 540 + + + +++ + +QA + + KI D+ Q + R Sbjct 552 LYGDRITASMEKAIGETERRRAKQQAYNEERGIIPQGLNKKIGDILQLGQPSMRGKGKGR 611 Query 541 ENQRQQFPVEHVQL 554 + + ++ L Sbjct 612 GSHKMADTTQYQSL 625 Score = 33.6 bits (75), Expect = 7.3, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 21/65 (32%), Gaps = 7/65 (11%) Query 9 EVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFR 68 E + L + ++ TG+GKT A V ++L L Q E + Sbjct 26 EGLENGLAHQTLLGV--TGSGKTFTVANVIADL-----NRPTMILAPNKTLAAQLYGEMK 78 Query 69 RMLDG 73 Sbjct 79 EFFPD 83 >sp|Q66D62|UVRB_YERPS UvrABC system protein B OS=Yersinia pseudotuberculosis serotype I (strain IP32953) OX=273123 GN=uvrB PE=3 SV=1 Length=671 Score = 88.7 bits (218), Expect = 6e-17, Method: Composition-based stats. Identities = 42/254 (17%), Positives = 96/254 (38%), Gaps = 22/254 (9%) Query 307 QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSN 366 Q Y K ++ + ++ L L P +++ L ++ ++ Sbjct 388 QTIYVSATPGKYELEKSGGDIIEQVVRPTGLLDPLIEVRPVATQVDDLLSEIR--IRAAI 445 Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R ++ T T++ A L +L + GA + + ++ E+I+ Sbjct 446 NERVLVTTLTKRMAEDLTDYLSE--------------HGAKVRYLHSDIDTVERVEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + + A Sbjct 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAI 551 Query 482 VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR 540 + + + +++ + +QA + + KI D+ Q + R Sbjct 552 LYGDRITASMEKAIGETERRRAKQQAYNEERGIIPQGLNKKIGDILQLGQPSMRGKGKGR 611 Query 541 ENQRQQFPVEHVQL 554 + + ++ L Sbjct 612 GSHKMADTTQYQSL 625 Score = 33.6 bits (75), Expect = 7.3, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 21/65 (32%), Gaps = 7/65 (11%) Query 9 EVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFR 68 E + L + ++ TG+GKT A V ++L L Q E + Sbjct 26 EGLENGLAHQTLLGV--TGSGKTFTVANVIADL-----NRPTMILAPNKTLAAQLYGEMK 78 Query 69 RMLDG 73 Sbjct 79 EFFPD 83 >sp|B2K8T5|UVRB_YERPB UvrABC system protein B OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) OX=502801 GN=uvrB PE=3 SV=1 Length=671 Score = 88.7 bits (218), Expect = 6e-17, Method: Composition-based stats. Identities = 42/254 (17%), Positives = 96/254 (38%), Gaps = 22/254 (9%) Query 307 QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSN 366 Q Y K ++ + ++ L L P +++ L ++ ++ Sbjct 388 QTIYVSATPGKYELEKSGGDIIEQVVRPTGLLDPLIEVRPVATQVDDLLSEIR--IRAAI 445 Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R ++ T T++ A L +L + GA + + ++ E+I+ Sbjct 446 NERVLVTTLTKRMAEDLTDYLSE--------------HGAKVRYLHSDIDTVERVEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + + A Sbjct 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAI 551 Query 482 VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR 540 + + + +++ + +QA + + KI D+ Q + R Sbjct 552 LYGDRITASMEKAIGETERRRAKQQAYNEERGIIPQGLNKKIGDILQLGQPSMRGKGKGR 611 Query 541 ENQRQQFPVEHVQL 554 + + ++ L Sbjct 612 GSHKMADTTQYQSL 625 Score = 33.6 bits (75), Expect = 7.3, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 21/65 (32%), Gaps = 7/65 (11%) Query 9 EVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFR 68 E + L + ++ TG+GKT A V ++L L Q E + Sbjct 26 EGLENGLAHQTLLGV--TGSGKTFTVANVIADL-----NRPTMILAPNKTLAAQLYGEMK 78 Query 69 RMLDG 73 Sbjct 79 EFFPD 83 >sp|A7FKM4|UVRB_YERP3 UvrABC system protein B OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) OX=349747 GN=uvrB PE=3 SV=1 Length=671 Score = 88.7 bits (218), Expect = 6e-17, Method: Composition-based stats. Identities = 42/254 (17%), Positives = 96/254 (38%), Gaps = 22/254 (9%) Query 307 QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSN 366 Q Y K ++ + ++ L L P +++ L ++ ++ Sbjct 388 QTIYVSATPGKYELEKSGGDIIEQVVRPTGLLDPLIEVRPVATQVDDLLSEIR--IRAAI 445 Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R ++ T T++ A L +L + GA + + ++ E+I+ Sbjct 446 NERVLVTTLTKRMAEDLTDYLSE--------------HGAKVRYLHSDIDTVERVEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + + A Sbjct 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAI 551 Query 482 VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR 540 + + + +++ + +QA + + KI D+ Q + R Sbjct 552 LYGDRITASMEKAIGETERRRAKQQAYNEERGIIPQGLNKKIGDILQLGQPSMRGKGKGR 611 Query 541 ENQRQQFPVEHVQL 554 + + ++ L Sbjct 612 GSHKMADTTQYQSL 625 Score = 33.6 bits (75), Expect = 7.3, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 21/65 (32%), Gaps = 7/65 (11%) Query 9 EVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFR 68 E + L + ++ TG+GKT A V ++L L Q E + Sbjct 26 EGLENGLAHQTLLGV--TGSGKTFTVANVIADL-----NRPTMILAPNKTLAAQLYGEMK 78 Query 69 RMLDG 73 Sbjct 79 EFFPD 83 >sp|Q31ES7|UVRB_HYDCU UvrABC system protein B OS=Hydrogenovibrio crunogenus (strain DSM 25203 / XCL-2) OX=317025 GN=uvrB PE=3 SV=1 Length=678 Score = 88.7 bits (218), Expect = 6e-17, Method: Composition-based stats. Identities = 38/197 (19%), Positives = 84/197 (43%), Gaps = 21/197 (11%) Query 349 PKLEMLEKILQRQ-FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG 407 P L ++ +L R ++ T T++ A +L +L++ ++R + L Sbjct 426 PALTQVDDLLGEIRLRVEKEERVLVTTLTKRMAENLTEYLEEH------NVRVRYL---- 475 Query 408 NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNE 462 + + ++ E+I+ + G ++LV ++ EGLDIP ++V L ++ Sbjct 476 ----HSDIDTVERIEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSD 531 Query 463 ISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAV-AAVQKMDQAEYQAK 521 S++Q GRA + + A + + + ++ I+E +Q Q + + K Sbjct 532 RSLIQTIGRAARNVAGKAILYADKITKSMQKAIDETERRRAKQIQHNTEQGITPQKLNKK 591 Query 522 IRDLQQAALTKRAAQAA 538 I D+ + + A+ Sbjct 592 ITDILEDSPYAPKPGAS 608 >sp|A8F0V9|UVRB_RICM5 UvrABC system protein B OS=Rickettsia massiliae (strain Mtu5) OX=416276 GN=uvrB PE=3 SV=1 Length=661 Score = 88.3 bits (217), Expect = 6e-17, Method: Composition-based stats. Identities = 40/216 (19%), Positives = 81/216 (38%), Gaps = 27/216 (13%) Query 346 PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 P ++E L +Q + R ++ T T++ A L +LQ+ + Sbjct 426 PATNQIEDLISEIQTT--IAKGFRVLVTTLTKKMAEDLTAYLQELK-------------- 469 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLT 460 S +H+ ++ E+++ + GT+++LV ++ EGLDIP C +V L Sbjct 470 YKTSYLHSHVHTLERIEILRDLRQGTIDILVGINLLREGLDIPECGLVAILDADKEGFLR 529 Query 461 NEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA 520 +E+S++Q GRA + + + ++ + + ETL + + Sbjct 530 SEVSLIQTIGRAARNSEGRVILYAD---KMTKSIDKAVSETLRRRQIQQEYNAKHGIIPK 586 Query 521 KIRDLQQAALTKRAAQAAQRENQRQ---QFPVEHVQ 553 I A + + Q P + Sbjct 587 TINRTIHALAEFEKIDSKLDKKQAHTLFDNPAKLKT 622 >sp|B2A713|UVRB_NATTJ UvrABC system protein B OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) OX=457570 GN=uvrB PE=3 SV=1 Length=658 Score = 88.3 bits (217), Expect = 6e-17, Method: Composition-based stats. Identities = 43/243 (18%), Positives = 95/243 (39%), Gaps = 23/243 (9%) Query 322 CAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAH 381 R++ + P +++ L + + + + R ++ T T++ A Sbjct 401 EHSERIVEQIIRPTGLVDPETEVRPVKGQIDDLYSEINK--RTDRNERVLVTTLTKKMAE 458 Query 382 SLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVA 441 L +L++ +G + + ++ E+I+ + G ++LV ++ Sbjct 459 DLTDYLRE--------------MGIRVRYMHSEIDTLERMEIIRDLRLGKFDVLVGINLL 504 Query 442 EEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAFVATEGSRELKRELIN 496 EGLD+P ++V L +E S++Q GRA + + + + + R I+ Sbjct 505 REGLDLPEVSLVAILDADKEGYLRDERSLIQTMGRAARNVNGRVIMYGDAITDSMRRAID 564 Query 497 EALETLMEQA-VAAVQKMDQAEYQAKIRDLQQAAL-TKRAAQAAQRENQRQQFPVEHVQL 554 E +Q A + Q K+ D+ +A + +AA EN ++ E +L Sbjct 565 ETNRRREKQIEFNARHNITPQTVQKKVHDVIEATRSAEDETEAATPENIQEMSAKERKEL 624 Query 555 LCI 557 + Sbjct 625 IAK 627 >sp|Q7WK66|UVRB_BORBR UvrABC system protein B OS=Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50) OX=257310 GN=uvrB PE=3 SV=1 Length=675 Score = 88.3 bits (217), Expect = 7e-17, Method: Composition-based stats. Identities = 81/564 (14%), Positives = 174/564 (31%), Gaps = 114/564 (20%) Query 26 TGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRR---------------- 69 TG+GKT A + R G +VL L Q E R Sbjct 50 TGSGKTYTMANMIARL-----GRPALVLAPNKTLAAQLYAEMREFFPRNAVEYFVSYYDY 104 Query 70 ------------MLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE 117 ++ ++ M A L R +++ T + + Sbjct 105 YQPEAYVPTRDLFIEKDSSINEHIEQMRLSATKSLLERRDTVIVGTVSCIYGIGNPGDYH 164 Query 118 EHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASK 177 V + + + ++ + ++ QY + + +V G T + + Sbjct 165 AMVLILRTGDRI------SRREVLARLVAMQYTRNDADFTRGVFRVRGETIDIFPAESPE 218 Query 178 LDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLM 237 L + +L+ + ++ + +L + P Y + ++L Sbjct 219 LALRLTLFDDEIESLELFDPLTGR-VRQKLPRFTVYPGSHYVTPRETVLRAIETIKEELR 277 Query 238 DQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYND-------- 289 +++ + +L ++ ++ L L + Y+ HL Sbjct 278 ERLAQLIADGKLVE--AQRLEQRTRFDLEMLQELGFCKGIENYSRHLSGAAPGEPPPTLI 335 Query 290 ALLIHDTVRAVDA----LAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATH- 344 L D + +D + L Y + K ++ RL + D+R L Sbjct 336 DYLPADALMFIDESHVTIGQLGGMYRGDRSRKETLVQYGFRLPSALDNRPLRLEEFEARM 395 Query 345 --------------------------------------GPENPKLEMLEKILQRQFSSSN 366 P + +++ L + + ++ Sbjct 396 RQCVFVSATPAAYEQEHADNVVEQVVRPTGLVDPIVEVRPAHTQVDDLLGEIHK--RAAL 453 Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 R ++ T T++ A L +L + G + + ++ E+I+ Sbjct 454 QERVLVTTLTKRMAEDLTDFLSE--------------HGVRVRYLHSDIDTVERVEIIRD 499 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLDIP ++V L +E S++Q GRA + + A Sbjct 500 LRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGRAI 559 Query 482 VATEGSRELKRELINEALETLMEQ 505 + + + R I+E +Q Sbjct 560 LYADRITDSMRRAIDETERRRAKQ 583 >sp|Q68XG5|UVRB_RICTY UvrABC system protein B OS=Rickettsia typhi (strain ATCC VR-144 / Wilmington) OX=257363 GN=uvrB PE=3 SV=1 Length=662 Score = 88.3 bits (217), Expect = 7e-17, Method: Composition-based stats. Identities = 37/222 (17%), Positives = 85/222 (38%), Gaps = 37/222 (17%) Query 346 PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 P ++E L +Q + R ++ T T++ A L +LQ Q Sbjct 426 PATNQVEDLISEIQTT--ITKGLRILVTTLTKKMAEDLTSYLQDLQYKTY---------- 473 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLT 460 +++ ++ E+++ + G +++LV ++ EG+DIP C +V L Sbjct 474 ----YLHSNIHTLERIEILRDLRQGNIDILVGINLLREGIDIPECGLVAILDADKEGFLR 529 Query 461 NEISMVQARGRARADQSVYAFVATEG---------SRELKRELINEA-------LETLME 504 +E+S++Q GRA + + + S L+R I + + + Sbjct 530 SEVSLIQTIGRAARNSRGKVILYADKMTKSIDKAVSETLRRRQIQQEYNKKYGIIPKTIN 589 Query 505 QAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQ 546 A+ ++ +++ + L A + + +++ Sbjct 590 SAIHTLESLEEIHDNKLDKKQTNTLLNNPAKLKSYMDKLKKE 631 >sp|Q4P3W3|DBP10_USTMA ATP-dependent RNA helicase DBP10 OS=Ustilago maydis (strain 521 / FGSC 9021) OX=237631 GN=DBP10 PE=3 SV=1 Length=1154 Score = 88.7 bits (218), Expect = 7e-17, Method: Composition-based stats. Identities = 69/472 (15%), Positives = 136/472 (29%), Gaps = 96/472 (20%) Query 26 TGAGKTRAAAYVAKRHLETVD----GAKVVVLVNRVHLVTQHGEEFRRMLDGRWTVTTLS 81 TG+GKT A L G K ++L L Q + + G Sbjct 192 TGSGKTLAYLIPLINRLNGRHSPTFGIKSLILCPSRELAVQILRVGKEIARGWKADAGEG 251 Query 82 GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHTHKDTV 141 D A + + +E+ ++ +V+ Sbjct 252 QDSRGEAIRWAIIVGGE---------------SLDEQFGIMSNNPDVVI----------- 285 Query 142 YNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQ 201 A+PG ++ +++ +L + + Sbjct 286 --------------------------ATPGR--------MLHLTVEMNLDLKSVEYVVFD 311 Query 202 NCCPQLQEHSQQPCKQ--YNLCHRRSQDPFGDLL-KKLMDQIHDHLEMPELSRKFGTQMY 258 + + ++ L R F L KKL++ L+ + Sbjct 312 EADRLFEMGFAEQLEEMLLRLPPTRQTLLFSATLPKKLVEFTKAGLQANPKLVRLDADSK 371 Query 259 EQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALA-ALQDFYHREHVTK 317 ++++ ++ +++ + LR L R +D A +D + + Sbjct 372 ISADLRMA-FFSVKPSEKEAALLVLLRDVIGVPLGEQAARDLDEEAQFNEDASDNQADGQ 430 Query 318 TQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTR 377 RR + L + G LE+L + IIF T+ Sbjct 431 RSRGYGNRRAEFKGKTKDKHLGNKRKRGGPGGALELLPH------------QTIIFCATK 478 Query 378 QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA 437 + G S + + Q + + +F+ G +LL+ Sbjct 479 HHVE--------------YLLLLLTTTGYACSHIYSSLDQATRGIQMSRFRRGQNSLLIV 524 Query 438 TSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSR 488 T VA G+D+P VV + + V GR ARA ++ +A+ + Sbjct 525 TDVAARGIDLPVLEHVVNFDFPPQPRTFVHRVGRTARAGRNGWAWSMCTNAE 576 >sp|Q83E18|UVRB_COXBU UvrABC system protein B OS=Coxiella burnetii (strain RSA 493 / Nine Mile phase I) OX=227377 GN=uvrB PE=3 SV=1 Length=672 Score = 88.3 bits (217), Expect = 8e-17, Method: Composition-based stats. Identities = 51/295 (17%), Positives = 106/295 (36%), Gaps = 29/295 (10%) Query 300 VDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATH-GPENPKLEMLEKIL 358 D L T + + R L P +++ L + Sbjct 379 FDEFEKLAPQTIFISATPGPYEEKQSDQVVELLVRPTGLIDPEIEVRPVATQVDDLLSEI 438 Query 359 QRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQR 418 ++ ++ + R ++ T T++ A L + + ++R + L + + Sbjct 439 KK--RAAQNERVLVTTLTKRMAEDLTEYFTEH------NVRVRYL--------HSDIDTV 482 Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRAR 473 ++ E+I+ + G ++LV ++ EGLDIP ++V L +E S++Q GRA Sbjct 483 ERVEIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTMGRAA 542 Query 474 ADQSVYAFVATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTK 532 + A + + + +KR + + + A + Q + ++ + A T Sbjct 543 RNVHGKAILYADRITDSMKRAMEEAERRRIAQSAYNEKHHITPKSIQKAVTEIIEGARTY 602 Query 533 RAAQAAQRENQRQQFPVEHVQLLCINCMVAVGHGSDLRKVEG-THHVNVNPNFSN 586 NQ Q E + + + +LRK+E +H N F Sbjct 603 TERGRFV--NQAQLIAEEEAKYIAMTPKQLA---KELRKLEEQMYHHARNLEFEE 652 >sp|A9NC09|UVRB_COXBR UvrABC system protein B OS=Coxiella burnetii (strain RSA 331 / Henzerling II) OX=360115 GN=uvrB PE=3 SV=1 Length=672 Score = 88.3 bits (217), Expect = 8e-17, Method: Composition-based stats. Identities = 51/295 (17%), Positives = 106/295 (36%), Gaps = 29/295 (10%) Query 300 VDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATH-GPENPKLEMLEKIL 358 D L T + + R L P +++ L + Sbjct 379 FDEFEKLAPQTIFISATPGPYEEKQSDQVVELLVRPTGLIDPEIEVRPVATQVDDLLSEI 438 Query 359 QRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQR 418 ++ ++ + R ++ T T++ A L + + ++R + L + + Sbjct 439 KK--RAAQNERVLVTTLTKRMAEDLTEYFTEH------NVRVRYL--------HSDIDTV 482 Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRAR 473 ++ E+I+ + G ++LV ++ EGLDIP ++V L +E S++Q GRA Sbjct 483 ERVEIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTMGRAA 542 Query 474 ADQSVYAFVATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTK 532 + A + + + +KR + + + A + Q + ++ + A T Sbjct 543 RNVHGKAILYADRITDSMKRAMEEAERRRIAQSAYNEKHHITPKSIQKAVTEIIEGARTY 602 Query 533 RAAQAAQRENQRQQFPVEHVQLLCINCMVAVGHGSDLRKVEG-THHVNVNPNFSN 586 NQ Q E + + + +LRK+E +H N F Sbjct 603 TERGRFV--NQAQLIAEEEAKYIAMTPKQLA---KELRKLEEQMYHHARNLEFEE 652 >sp|B6J1E8|UVRB_COXB2 UvrABC system protein B OS=Coxiella burnetii (strain CbuG_Q212) OX=434923 GN=uvrB PE=3 SV=1 Length=672 Score = 88.3 bits (217), Expect = 8e-17, Method: Composition-based stats. Identities = 51/295 (17%), Positives = 106/295 (36%), Gaps = 29/295 (10%) Query 300 VDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATH-GPENPKLEMLEKIL 358 D L T + + R L P +++ L + Sbjct 379 FDEFEKLAPQTIFISATPGPYEEKQSDQVVELLVRPTGLIDPEIEVRPVATQVDDLLSEI 438 Query 359 QRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQR 418 ++ ++ + R ++ T T++ A L + + ++R + L + + Sbjct 439 KK--RAAQNERVLVTTLTKRMAEDLTEYFTEH------NVRVRYL--------HSDIDTV 482 Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRAR 473 ++ E+I+ + G ++LV ++ EGLDIP ++V L +E S++Q GRA Sbjct 483 ERVEIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTMGRAA 542 Query 474 ADQSVYAFVATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTK 532 + A + + + +KR + + + A + Q + ++ + A T Sbjct 543 RNVHGKAILYADRITDSMKRAMEEAERRRIAQSAYNEKHHITPKSIQKAVTEIIEGARTY 602 Query 533 RAAQAAQRENQRQQFPVEHVQLLCINCMVAVGHGSDLRKVEG-THHVNVNPNFSN 586 NQ Q E + + + +LRK+E +H N F Sbjct 603 TERGRFV--NQAQLIAEEEAKYIAMTPKQLA---KELRKLEEQMYHHARNLEFEE 652 >sp|Q46323|UVRB_CLOPE UvrABC system protein B OS=Clostridium perfringens (strain 13 / Type A) OX=195102 GN=uvrB PE=3 SV=2 Length=659 Score = 88.3 bits (217), Expect = 8e-17, Method: Composition-based stats. Identities = 52/398 (13%), Positives = 137/398 (34%), Gaps = 30/398 (8%) Query 167 TASPGTGGASKLDGAINHVLQLCANL-DTWCIMSPQN---CCPQLQEHSQQPCKQYNLC- 221 + +P + A+ + + + L D +++ ++ +L++ + + Sbjct 241 SITPASHFAASEETLEKSIRVIEDELEDRLKVLTAEDKILEAQRLKQRTNYDIEMIREMG 300 Query 222 HRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYA 281 + + + + +L M + F + E V A AG + ++ Sbjct 301 YCQGIENYSRILDGRMPGTPPQTLLDYFPEDFLMFIDESHVTLPQVRAMYAGDRSRKTSL 360 Query 282 LHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHL 341 + + ++ + + + L + L + Sbjct 361 VEFGFRLPCAFDNRPLKFSEFESKINQVVFVSATPGEYELDHSEIVAEQIIRPTGLLDPV 420 Query 342 ATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQ 401 P +++ L +QR R +I T T++ A L +L+ Sbjct 421 IEIRPIQGQIDDLYGEIQRT--VQRGFRVLITTLTKRMAEDLTKYLKD------------ 466 Query 402 LLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG---- 457 + + + + ++ ++I++ + G +++L+ ++ EGLDIP +V Sbjct 467 --LNVKATYMHSDIDTLERMKIIRELRLGEVDVLIGINLLREGLDIPEVALVAILDADKE 524 Query 458 -LLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQ 515 L +E S++Q GR AR +S A ++ + + + +++ + Sbjct 525 GFLRSETSLIQTIGRAARNSESKVIMYADNITKSMDKSIKETERRRVIQMEYNEEHNITP 584 Query 516 AEYQAKIRDLQQAALTKRAA---QAAQRENQRQQFPVE 550 +RD+ +A ++ ++ ++ PVE Sbjct 585 TTVIKGVRDIIEATKVSEEKENYESEVKKAAKKDIPVE 622 >sp|Q6CM95|SUB2_KLULA ATP-dependent RNA helicase SUB2 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=SUB2 PE=3 SV=1 Length=437 Score = 87.2 bits (214), Expect = 8e-17, Method: Composition-based stats. Identities = 33/206 (16%), Positives = 67/206 (33%), Gaps = 29/206 (14%) Query 310 YHREHVTKTQILCAERRLLALFDDRKNELAHLATHG--------PENPKLEMLEKILQRQ 361 +++ R L + ++ A L HG E K L ++L Sbjct 236 MFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLDDL 295 Query 362 FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ 421 + IIF ++ A+ L L HM Q ++ Sbjct 296 ----EFNQVIIFVKSTVRANELTKLLNASNFPAIT--------------VHGHMKQEERI 337 Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQS---V 478 + F++ + V+T V G+DI N+ + Y + + GRA + Sbjct 338 ARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLA 397 Query 479 YAFVATEGSRELKRELINEALETLME 504 + +++E ++ ++ + E Sbjct 398 ISMISSEDDEQVLAKIQERFDVKITE 423 Score = 47.9 bits (112), Expect = 2e-04, Method: Composition-based stats. Identities = 29/133 (22%), Positives = 52/133 (39%), Gaps = 10/133 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE 65 Q I ++ G +++ +G GKT + L+ V G VVVL N L Q Sbjct 80 QQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVQGEVSVVVLCNARELAYQIRN 139 Query 66 EFRRMLD--GRWTVTTLSGDMGPRAGFGHLARCHDL---LICTAELLQMALTSPEEEEHV 120 E+ R G + L++ + ++ T L+ + ++H+ Sbjct 140 EYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVATPGRLK----ALVRDKHI 195 Query 121 ELTVFSLIVVDEC 133 +L+ V+DEC Sbjct 196 DLSHVKNFVIDEC 208 >sp|P0CQ84|HAS1_CRYNJ ATP-dependent RNA helicase HAS1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=HAS1 PE=3 SV=2 Length=544 Score = 87.5 bits (215), Expect = 8e-17, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 49/129 (38%), Gaps = 15/129 (12%) Query 356 KILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHM 415 +L + + I+F + S + L +D+ L G Sbjct 302 MLLFTFLKKNLKKKVIVFFSSCNSVK------YHAELLNYIDVPVLDLHG--------KQ 347 Query 416 TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA 474 Q+ + +F + +L+ T VA GLDIP + ++++ + + GR ARA Sbjct 348 KQQKRTNTFFEFINAPAGILLCTDVAARGLDIPKVDWIIQFDPPDDPRDYIHRVGRTARA 407 Query 475 DQSVYAFVA 483 +S + + Sbjct 408 GKSGKSLLF 416 Score = 56.7 bits (135), Expect = 5e-07, Method: Composition-based stats. Identities = 31/136 (23%), Positives = 53/136 (39%), Gaps = 11/136 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHL------ETVDGAKVVVLVNRVHLV 60 Q I P L GK+++ TG+GKT A + L + V+G V+++ L Sbjct 93 QARTIPPLLAGKDVLGAARTGSGKTM-AFLIPSVELLSTLRFKPVNGTGVIIISPTRELA 151 Query 61 TQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 Q + ++ G L G +A L + +L++ T L L + + Sbjct 152 LQIFGVAKELMQGHSQTFGVLMGGANRKAEADKLVKGVNLIVATPGRLLDHLQNTKGFVF 211 Query 120 VELTVFSLIVVDECHH 135 L +V+DE Sbjct 212 KNLKA---LVIDEADR 224 >sp|A9KCU2|UVRB_COXBN UvrABC system protein B OS=Coxiella burnetii (strain Dugway 5J108-111) OX=434922 GN=uvrB PE=3 SV=1 Length=672 Score = 88.3 bits (217), Expect = 8e-17, Method: Composition-based stats. Identities = 51/295 (17%), Positives = 106/295 (36%), Gaps = 29/295 (10%) Query 300 VDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATH-GPENPKLEMLEKIL 358 D L T + + R L P +++ L + Sbjct 379 FDEFEKLAPQTIFISATPGPYEEKQSDQVVELLVRPTGLIDPEIEVRPVATQVDDLLSEI 438 Query 359 QRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQR 418 ++ ++ + R ++ T T++ A L + + ++R + L + + Sbjct 439 KK--RAAQNERVLVTTLTKRMAEDLTEYFTEH------NVRVRYL--------HSDIDTV 482 Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRAR 473 ++ E+I+ + G ++LV ++ EGLDIP ++V L +E S++Q GRA Sbjct 483 ERVEIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTMGRAA 542 Query 474 ADQSVYAFVATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTK 532 + A + + + +KR + + + A + Q + ++ + A T Sbjct 543 RNVHGKAILYADRITDSMKRAMEEAERRRIAQSAYNEKHHITPKSIQKAVTEIIEGARTY 602 Query 533 RAAQAAQRENQRQQFPVEHVQLLCINCMVAVGHGSDLRKVEG-THHVNVNPNFSN 586 NQ Q E + + + +LRK+E +H N F Sbjct 603 TERGRFV--NQAQLIAEEESKYIAMTPKQLA---KELRKLEEQMYHHARNLEFEE 652 >sp|Q0TUD0|UVRB_CLOP1 UvrABC system protein B OS=Clostridium perfringens (strain ATCC 13124 / DSM 756 / JCM 1290 / NCIMB 6125 / NCTC 8237 / Type A) OX=195103 GN=uvrB PE=3 SV=1 Length=659 Score = 87.9 bits (216), Expect = 9e-17, Method: Composition-based stats. Identities = 53/398 (13%), Positives = 138/398 (35%), Gaps = 30/398 (8%) Query 167 TASPGTGGASKLDGAINHVLQLCANL-DTWCIMSPQN---CCPQLQEHSQQPCKQYNLC- 221 + +P + A+ + + + L D +++ ++ +L++ + + Sbjct 241 SITPASHFAASEETLEKSIRVIEDELEDRLKVLTAEDKILEAQRLKQRTNYDIEMIREMG 300 Query 222 HRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYA 281 + + + + +L M + F + E V A AG + ++ Sbjct 301 YCQGIENYSRILDGRMPGTPPQTLLDYFPEDFLMFIDESHVTLPQVRAMYAGDRSRKTSL 360 Query 282 LHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHL 341 + + ++ + + + L + + L + Sbjct 361 VEFGFRLPCAFDNRPLKFSEFESKINQVVFVSATPGEYELDHSKVVAEQIIRPTGLLDPV 420 Query 342 ATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQ 401 P +++ L +QR R +I T T++ A L +L+ Sbjct 421 IEIRPIQGQIDDLYGEIQRT--VQRGFRVLITTLTKRMAEDLTKYLKD------------ 466 Query 402 LLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG---- 457 + + + + ++ ++I++ + G +++L+ ++ EGLDIP +V Sbjct 467 --LNVKATYMHSDIDTLERMKIIRELRLGEVDVLIGINLLREGLDIPEVALVAILDADKE 524 Query 458 -LLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQ 515 L +E S++Q GR AR +S A ++ + + + +++ + Sbjct 525 GFLRSETSLIQTIGRAARNSESKVIMYADNITKSMDKSIKETERRRVIQMEYNEEHNITP 584 Query 516 AEYQAKIRDLQQAALTKRAAQAAQRENQ---RQQFPVE 550 +RD+ +A + + E + ++ PVE Sbjct 585 TTVIKGVRDIIEATKVSEEKENYEDEVKKAAKKDIPVE 622 >sp|Q9FT69|RQSIM_ARATH ATP-dependent DNA helicase Q-like SIM OS=Arabidopsis thaliana OX=3702 GN=RECQSIM PE=2 SV=1 Length=858 Score = 88.3 bits (217), Expect = 1e-16, Method: Composition-based stats. Identities = 71/489 (15%), Positives = 159/489 (33%), Gaps = 78/489 (16%) Query 2 ELRSYQWEVIMPALEGKNIIIWLPTGAGKTR---AAAYVAKRHLETVDGAKVVVLVNRVH 58 LRS+Q E + + K+ ++ TG+GK+ A + G VVV+ + Sbjct 168 SLRSFQREALSTWVAHKDCLVLAATGSGKSLCFQIPALLT--------GKVVVVISPLIS 219 Query 59 LVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEE 118 L+ + R SG + + + ++ E + + ++ Sbjct 220 LMHDQCLKLSRH--KVSACFLGSGQLDNCIEEKAMQGMYQIIYVCPETVVRLIKPLQKLA 277 Query 119 HVELTVFSLIVVDECH------HTHKDTVYNVI---MSQYLELKLQRAQPLPQVLGLTAS 169 + +L +DE H H + Y + + L+ + ++ LTA+ Sbjct 278 --KTHGIALFAIDEAHCVSKWGHDFRPH-YRKLSVLRENFCASNLEFLEYDVPIMALTAT 334 Query 170 PGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQ-QPCKQYNLCHRRSQDP 228 + +++ + + +HS+ + Y + D Sbjct 335 ATVNVQEDILESLHLSKET----KIVLTSFFRPNLQFSVKHSRTKFASSYAKDFQNLVDL 390 Query 229 FGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQE-QRVYALHLRRY 287 + + ++ E FG+ E + + + + + Sbjct 391 YSEKKNSTGKKLAVISRESEEQTDFGSHDSENIHETDYDEDEEDQENSLAKKNSSNGKEL 450 Query 288 NDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPE 347 ++A L +T + V + C E + + + + Sbjct 451 SEAYLEDETD-------------IFQSVDDWDVACGEFCAMPSCELLEIPVP-------- 489 Query 348 NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG 407 + K + LE + II+ TR+ + ++ +L +G Sbjct 490 SEKQKDLEGL------------TIIYVPTRKESVNIAKYLCG--------------VGLK 523 Query 408 NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 ++ + + ++ ++V Q F D L ++VAT G+D + ++ YG L + + Q Sbjct 524 AAAYNASLPKKHLRQVHQDFHDNKLQVVVATIAFGMGIDKKNVRKIIHYGWLQSLEAYYQ 583 Query 468 ARGRARADQ 476 GRA D Sbjct 584 EAGRAGRDG 592 >sp|A0KSP4|RAPA_SHESA RNA polymerase-associated protein RapA OS=Shewanella sp. (strain ANA-3) OX=94122 GN=rapA PE=3 SV=1 Length=968 Score = 88.3 bits (217), Expect = 1e-16, Method: Composition-based stats. Identities = 75/452 (17%), Positives = 151/452 (33%), Gaps = 40/452 (9%) Query 27 GAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGP 86 G GKT A + + L T +V+++V L Q E R + R++V + Sbjct 179 GLGKTIEAGLIIHQQLLTGRAERVLIIVPD-TLRHQWLVEMLRRFNLRFSVFDEDRCVEA 237 Query 87 RAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHT--HKDTVYNV 144 A + L+IC+ L + + + L+VVDE HH ++ Sbjct 238 FADHDNPFYTEQLVICS----LELLRKKKRLDQALDADWDLLVVDEAHHLEWTEEAPSRA 293 Query 145 IMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCC 204 ++ ++ +P VL LTA+P G +H +L LD Sbjct 294 -----YQVVEALSEVVPGVLLLTATP------DQLGHESHFARL-RLLDPDRFYDYDAFL 341 Query 205 PQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVK 264 + E+S + D + ++ ++ R + + ++ + Sbjct 342 AE--ENSYKDVA-VAAEALAGDAKLSDAAINSLTELLSEKDIAPSIRLIQAEDIDSELQQ 398 Query 265 LSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAE 324 + + L L ++ L R + A + R +A + +++ Sbjct 399 AARSELLQELLDRHGTGRVLYRNSRASVKGFPKRIFNAYPHAMPEQYLTAARVNEMMGGR 458 Query 325 RRL---LALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAH 381 + L A + + K + L S S + +I +A Sbjct 459 KSLEAQAAQALSPEKLYQEFEDNSASWWKFDPRVDWLIEFLKSHRSKKVLIIASGADTAL 518 Query 382 SLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF--QDGTLNLLVATS 439 SL L+ ++G+Q M+ ++ + F ++G L+ + Sbjct 519 SLEEALRTREGIQATVFH-------------EGMSIIERDKAGAYFAQEEGGAQALICSE 565 Query 440 VAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 + EG + + +V + L N + Q GR Sbjct 566 IGSEGRNFQFASHLVLFDLPLNPDLLEQRIGR 597 >sp|P0CQ82|DBP4_CRYNJ ATP-dependent RNA helicase DBP4 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=DBP4 PE=3 SV=2 Length=856 Score = 88.3 bits (217), Expect = 1e-16, Method: Composition-based stats. Identities = 42/244 (17%), Positives = 77/244 (32%), Gaps = 43/244 (18%) Query 288 NDALLIHDTVRAVDA--LAALQDFYHREHVTKTQILCAERRLLALFDDRKNE----LAHL 341 L++ + R +D L AL+ +T R LF +++ LA L Sbjct 207 VKVLVLDEADRLLDLGFLPALKAIVSHFSPVQTAPGSRPSRQTLLFSATQSKDLAALAKL 266 Query 342 ATHGPEN----------------------PKLEMLEKILQRQFSSSNSPRGIIFTRTRQS 379 + + P LE L S +GI+F + + Sbjct 267 SLYEPLYISCNKPGEEGVMPANLEQYYAVVPLERKLDALWGFVKSHLKMKGIVFVTSGKQ 326 Query 380 AHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATS 439 + ++ G Q + ++ Q+F LL+ T Sbjct 327 VRFIFETFRRLHP------------GLPLMHLHGKQKQPTRLDIFQRFSSSKSALLICTD 374 Query 440 VAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR--ADQSVYAFVATEGSRELKRELIN 496 VA GLD P + V++ + + + GR AR + + + +K Sbjct 375 VAARGLDFPAVDWVIQLDCPDDVDTYIHRVGRTARYQSAGTALTILCPSEEEGMKTRWGE 434 Query 497 EALE 500 +A+E Sbjct 435 KAIE 438 Score = 49.8 bits (117), Expect = 9e-05, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 47/135 (35%), Gaps = 10/135 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAY------VAKRHLETVDGAKVVVLVNRVHLV 60 Q I PAL+ ++I+ TG+GKT A + +DG VV+ L Sbjct 87 QSLAIPPALQARDILGSAKTGSGKTL-AFLIPLLERLYLEKWGPMDGLGAVVISPTRELA 145 Query 61 TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 Q + R + L P ++LI T L L S Sbjct 146 VQTFMQLRDIGKYHNFSAGLVIGGKPLKEEQERLGRMNILIATPGRLLQHLDSTVG---F 202 Query 121 ELTVFSLIVVDECHH 135 + + ++V+DE Sbjct 203 DSSAVKVLVLDEADR 217 >sp|Q6HBC2|UVRB_BACHK UvrABC system protein B OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) OX=281309 GN=uvrB PE=3 SV=1 Length=658 Score = 87.9 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 35/199 (18%), Positives = 78/199 (39%), Gaps = 20/199 (10%) Query 365 SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI 424 + + R +I T T++ + L +L+ +G + + + ++ E+I Sbjct 443 AKNERVLITTLTKKMSEDLTDYLKD--------------VGIKVNYLHSEVKTLERIEII 488 Query 425 QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGR-ARADQSV 478 + + G ++LV ++ EGLDIP ++V L +E S++Q GR AR + Sbjct 489 RDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNENGR 548 Query 479 YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA 538 A +R + + +++A + Q +RD+ +A + Sbjct 549 VIMYADRITRSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAEEPETY 608 Query 539 QRENQRQQFPVEHVQLLCI 557 + ++ E + + Sbjct 609 EATPAKKMTKKEREKTIAK 627 >sp|Q8EJ93|RAPA_SHEON RNA polymerase-associated protein RapA OS=Shewanella oneidensis (strain ATCC 700550 / JCM 31522 / CIP 106686 / LMG 19005 / NCIMB 14063 / MR-1) OX=211586 GN=rapA PE=3 SV=1 Length=968 Score = 88.3 bits (217), Expect = 1e-16, Method: Composition-based stats. Identities = 75/452 (17%), Positives = 151/452 (33%), Gaps = 40/452 (9%) Query 27 GAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGP 86 G GKT A + + L T +V+++V L Q E R + R++V + Sbjct 179 GLGKTIEAGLIIHQQLLTCRAERVLIIVPD-TLRHQWLVEMLRRFNLRFSVFDEDRCVEA 237 Query 87 RAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHT--HKDTVYNV 144 A + L+IC+ L + + + L+VVDE HH ++ Sbjct 238 FADHDNPFYTEQLVICS----LELLRKKKRLDQALDADWDLLVVDEAHHLEWTEEAPSRA 293 Query 145 IMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCC 204 ++ ++ +P VL LTA+P G +H +L LD Sbjct 294 -----YQVVEALSEVVPGVLLLTATP------DQLGHESHFARL-RLLDPDRFYDYDAFL 341 Query 205 PQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVK 264 + E+S + + D + ++ ++ R + + ++ + Sbjct 342 AE--ENSYKDVA-IAAEALAGESKLSDYAINSLTELLSEKDIAPSIRLIQAEGIDSELQQ 398 Query 265 LSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAE 324 + + L L ++ L R + A + R +A + ++ Sbjct 399 AARSELLQELLDRHGTGRVLYRNSRASVKGFPKRIFNAYPHAMPEQYLTAARVNDMMGGR 458 Query 325 RRL---LALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAH 381 + L A + + K + L S S + +I +A Sbjct 459 KSLEAKAAQALSPEKLYQEFEDNSASWWKFDPRVDWLIEFLKSHRSKKVLIIASGADTAL 518 Query 382 SLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF--QDGTLNLLVATS 439 SL L+ ++G+Q M+ ++ + F ++G L+ + Sbjct 519 SLEEALRTREGIQATVFH-------------EGMSIIERDKAGAYFAQEEGGAQALICSE 565 Query 440 VAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 + EG + + +V + L N + Q GR Sbjct 566 IGSEGRNFQFASHLVLFDLPLNPDLLEQRIGR 597 >sp|Q81X47|UVRB_BACAN UvrABC system protein B OS=Bacillus anthracis OX=1392 GN=uvrB PE=3 SV=1 Length=658 Score = 87.9 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 35/199 (18%), Positives = 78/199 (39%), Gaps = 20/199 (10%) Query 365 SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI 424 + + R +I T T++ + L +L+ +G + + + ++ E+I Sbjct 443 AKNERVLITTLTKKMSEDLTDYLKD--------------VGIKVNYLHSEVKTLERIEII 488 Query 425 QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGR-ARADQSV 478 + + G ++LV ++ EGLDIP ++V L +E S++Q GR AR + Sbjct 489 RDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNENGR 548 Query 479 YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA 538 A +R + + +++A + Q +RD+ +A + Sbjct 549 VIMYADRITRSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAEEPETY 608 Query 539 QRENQRQQFPVEHVQLLCI 557 + ++ E + + Sbjct 609 EATPAKKMTKKEREKTIAK 627 >sp|Q4HVW2|SPB4_GIBZE ATP-dependent rRNA helicase SPB4 OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=SPB4 PE=3 SV=1 Length=637 Score = 87.5 bits (215), Expect = 1e-16, Method: Composition-based stats. Identities = 41/193 (21%), Positives = 70/193 (36%), Gaps = 20/193 (10%) Query 338 LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD 397 L P + KL L ++L++ R I+F T + + Q L + Sbjct 268 LQMTYMVKPASQKLPALAELLRQL--PVRPQRSIVFLSTCAAVD----YFQHILPLILPE 321 Query 398 IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN-LLVATSVAEEGLDIPHCNVVVRY 456 G + +++ KF +L+ T +A GLDIP ++VV+ Sbjct 322 -------GFALVPLHGKHAAKVREKNFNKFLSSVSPTILLTTDLAARGLDIPQVDLVVQI 374 Query 457 GLLTNEISMVQARGRA-RADQSVYAFVA----TEGSRELKRELINEALETLMEQAVAAVQ 511 ++ + GRA RA + A V E E+ + L + + + Sbjct 375 DAPSDPKVFIHRSGRAGRAGRKGLAVVMLHPGREEDYVQFLEIRKTPIAPLEKPTITTSE 434 Query 512 KMDQAEYQAKIRD 524 D AE+ K RD Sbjct 435 D-DAAEFAKKTRD 446 Score = 42.1 bits (97), Expect = 0.018, Method: Composition-based stats. Identities = 38/256 (15%), Positives = 81/256 (32%), Gaps = 57/256 (22%) Query 7 QWEVIMPA-----LEGKNIIIWLPTGAGKTRAAAY--VAKRHLETVDGAK-----VVVLV 54 Q + A + K++++ TG+GKT A + ++ L + K +++ Sbjct 36 QMTPVQAATLPHFMGNKDVVVEAVTGSGKTL-AFLIPLVQKLLRLSEPTKKHHVAAIIVS 94 Query 55 NRVHLVTQHGEEFRRMLD------------------------GRWTVTTLSGDMGPRAGF 90 L Q ++L L G Sbjct 95 PTRELAAQIHTVLMKLLQFHEASAEILPHLKDDDEKRPFTTVPAIVPQLLVGGTTTTVQD 154 Query 91 GHLARCH--DLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQ 148 H ++LI + L ++SP H + F ++V+DE + ++ Sbjct 155 LRFFLRHSPNVLISSPGRLVELMSSP--HVHCPQSSFEVLVLDEA---------DRLLDL 203 Query 149 YLELKLQR---AQPLPQVLGL-TASPGTGGASKLDGAINHVLQLCANLDTW--CIMSPQN 202 + LQ+ P + GL +AS + + + +++ + I+ + Sbjct 204 GFKPDLQKILSHLPKQRRTGLFSASVSEAVGEIIRVGLRNPVKIEVKVKIKGGGILEDRK 263 Query 203 CCPQL-QEHSQQPCKQ 217 L + +P Q Sbjct 264 TPASLQMTYMVKPASQ 279 >sp|Q6FL17|SUB2_CANGA ATP-dependent RNA helicase SUB2 OS=Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=SUB2 PE=3 SV=1 Length=439 Score = 86.8 bits (213), Expect = 1e-16, Method: Composition-based stats. Identities = 39/216 (18%), Positives = 74/216 (34%), Gaps = 24/216 (11%) Query 310 YHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPE--NPKLEM--LEKILQRQFSSS 365 +++ R L + ++ A L HG + KLE + L + Sbjct 238 MFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLEEREKNRKLAQLLDDL 297 Query 366 NSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQ 425 + IIF ++ A+ L L HM Q ++ + Sbjct 298 EFNQVIIFVKSTSRANELTKLLNASNFPAIT--------------VHGHMKQEERIARYK 343 Query 426 KFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQS---VYAFV 482 F+D + V+T V G+DI N+ + Y LL + GRA + +FV Sbjct 344 AFKDFEKRICVSTDVFGRGIDIERINLAINYDLLNEADQYLHRVGRAGRFGTKGLAISFV 403 Query 483 ATEGSRELK---RELINEALETLMEQAVAAVQKMDQ 515 + + E+ +E + + E+ + ++ Sbjct 404 SNKEDEEVLSKIQERFDVKIAEFPEEGIDPSTYLNN 439 Score = 48.6 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 53/135 (39%), Gaps = 14/135 (10%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQ--- 62 Q I ++ G +++ +G GKT + L+ V G VVV+ N L Q Sbjct 82 QQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVSVVVICNARELAYQIRN 141 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHD----LLICTAELLQMALTSPEEEE 118 F + + T G P A L + D +++ T L+ + ++ Sbjct 142 EYLRFSKYMPDVRTAVFYGG--TPIAKDAELLKNKDTAPHIVVATPGRLK----ALVRDK 195 Query 119 HVELTVFSLIVVDEC 133 ++L+ V+DEC Sbjct 196 MIDLSHVKNFVIDEC 210 >sp|P23128|DDX6_DROME ATP-dependent RNA helicase me31b OS=Drosophila melanogaster OX=7227 GN=me31B PE=1 SV=3 Length=459 Score = 86.8 bits (213), Expect = 1e-16, Method: Composition-based stats. Identities = 50/342 (15%), Positives = 107/342 (31%), Gaps = 31/342 (9%) Query 165 GLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRR 224 G T + ++D +++ L + C +L +H R Sbjct 107 GKTGAYCIPVLEQIDPTKDYIQALVMVPTRELALQTSQICIELAKHLDI---------RV 157 Query 225 SQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHL 284 G +LK + +I+ +++ + + +++V +S L + ++ +L Sbjct 158 MVTTGGTILKDDILRIYQKVQLIIATPGRILDLMDKKVADMSHCRILVLDEADKLLSLDF 217 Query 285 RRYNDALLIH-DTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLAT 343 + D +++ + +A + + K L + + + + Sbjct 218 QGMLDHVILKLPKDPQILLFSATFPLTVKNFMEK--HLREPYEINLMEELTLKGVTQYYA 275 Query 344 HGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLL 403 E K+ L FS + IIF + Q L + + Sbjct 276 FVQERQKV----HCLNTLFSKLQINQSIIFCNSTQRVELLAKKITE-------------- 317 Query 404 IGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI 463 +G M Q + V F+ G LV + + G+D+ NVV+ + Sbjct 318 LGYCCYYIHAKMAQAHRNRVFHDFRQGLCRNLVCSDLFTRGIDVQAVNVVINFDFPRMAE 377 Query 464 SMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLME 504 + + GR R A I + L T ++ Sbjct 378 TYLHRIGRSGRFGHLGIAINLITYEDRFDLHRIEKELGTEIK 419 Score = 49.8 bits (117), Expect = 7e-05, Method: Composition-based stats. Identities = 36/167 (22%), Positives = 68/167 (41%), Gaps = 15/167 (9%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLE-TVDGAKVVVLVNRVHLVTQHGE 65 Q I AL GK+++ G GKT A ++ T D + +V+V L Q + Sbjct 85 QEAAIPIALSGKDVLARAKNGTGKTGAYCIPVLEQIDPTKDYIQALVMVPTRELALQTSQ 144 Query 66 ---EFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 E + LD R VT +G + + + L+I T + + + + Sbjct 145 ICIELAKHLDIRVMVT--TGGTILKDDILRIYQKVQLIIATPGRILDLMDKKVAD----M 198 Query 123 TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS 169 + ++V+DE D + ++ L+ + + PQ+L +A+ Sbjct 199 SHCRILVLDEA-----DKLLSLDFQGMLDHVILKLPKDPQILLFSAT 240 >sp|P0CQ85|HAS1_CRYNB ATP-dependent RNA helicase HAS1 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=HAS1 PE=3 SV=1 Length=607 Score = 87.5 bits (215), Expect = 1e-16, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 49/129 (38%), Gaps = 15/129 (12%) Query 356 KILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHM 415 +L + + I+F + S + L +D+ L G Sbjct 365 MLLFTFLKKNLKKKVIVFFSSCNSVK------YHAELLNYIDVPVLDLHG--------KQ 410 Query 416 TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA 474 Q+ + +F + +L+ T VA GLDIP + ++++ + + GR ARA Sbjct 411 KQQKRTNTFFEFINAPAGILLCTDVAARGLDIPKVDWIIQFDPPDDPRDYIHRVGRTARA 470 Query 475 DQSVYAFVA 483 +S + + Sbjct 471 GKSGKSLLF 479 Score = 56.3 bits (134), Expect = 6e-07, Method: Composition-based stats. Identities = 31/136 (23%), Positives = 53/136 (39%), Gaps = 11/136 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHL------ETVDGAKVVVLVNRVHLV 60 Q I P L GK+++ TG+GKT A + L + V+G V+++ L Sbjct 156 QARTIPPLLAGKDVLGAARTGSGKTM-AFLIPSVELLSTLRFKPVNGTGVIIISPTRELA 214 Query 61 TQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 Q + ++ G L G +A L + +L++ T L L + + Sbjct 215 LQIFGVAKELMQGHSQTFGVLMGGANRKAEADKLVKGVNLIVATPGRLLDHLQNTKGFVF 274 Query 120 VELTVFSLIVVDECHH 135 L +V+DE Sbjct 275 KNLKA---LVIDEADR 287 >sp|Q757I6|MAK5_EREGS ATP-dependent RNA helicase MAK5 OS=Eremothecium gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=MAK5 PE=3 SV=1 Length=752 Score = 87.9 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 56/351 (16%), Positives = 111/351 (32%), Gaps = 37/351 (11%) Query 156 RAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPC 215 R + +GL +P A ++ + V L + + IM ++ Sbjct 244 RDDTDSRPIGLIFTPTRELAHQVTDHLREVGALLVKRNPYSIMCLTGGLSIQKQERLLKY 303 Query 216 KQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQ 275 K + F +LL+K I ++ L ++ + + E + Sbjct 304 KGSARVVVATPGRFLELLEKDQTLIDRFAKVDTLVLDEADRLLQDGHFEEFERILKHLSR 363 Query 276 EQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRK 335 ++ + +++ +I+ ++D L + ++ E L L Sbjct 364 ARKF--TNGKKHGWKTMIYSATFSLDYFNKLSNTSWKKMKKAPSENEMEEVLKHLMTKIP 421 Query 336 NELAHLATHGPENPKL-----EMLEKIL-------QRQFSSSNSPRGIIFTRTRQSAHSL 383 L K+ E L + L F + ++F S L Sbjct 422 FRGKPLIIDTNPEQKVASQIKESLIECLPTERDLYVYYFVTLYPGTTLVFCNAIDSVKKL 481 Query 384 LLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD--------GTLNLL 435 +L + + M Q+++ + ++KFQ+ +L Sbjct 482 NAYLHNLK--------------ISAFQIHSSMLQKNRLKSLEKFQEQAKKNQALNKPTVL 527 Query 436 VATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATE 485 +A+ VA GLDIP V+ Y L + + GR ARA+ A Sbjct 528 IASDVAARGLDIPGIQHVIHYHLPRSADVYIHRSGRTARAENEGVAVTICS 578 Score = 51.7 bits (122), Expect = 2e-05, Method: Composition-based stats. Identities = 22/145 (15%), Positives = 48/145 (33%), Gaps = 15/145 (10%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTR---AAAY--VAKRHLETVDGAKVVVLVNRVHLVT 61 Q + I AL+G +I+ TG+GKT + + ++ + L Sbjct 207 QLQSIPKALDGHDIMGKASTGSGKTLAYGIPILEGIIRDDTDSRPIGLIF--TPTRELAH 264 Query 62 QHGEEFRRMLDG-----RWTVTTLSGDMGPRAGFG--HLARCHDLLICTAELLQMALTSP 114 Q + R + +++ L+G + + +++ T L Sbjct 265 QVTDHLREVGALLVKRNPYSIMCLTGGLSIQKQERLLKYKGSARVVVATPGRFLE-LLEK 323 Query 115 EEEEHVELTVFSLIVVDECHHTHKD 139 ++ +V+DE +D Sbjct 324 DQTLIDRFAKVDTLVLDEADRLLQD 348 >sp|A7IB61|HELS_METB6 ATP-dependent DNA helicase Hel308 OS=Methanoregula boonei (strain DSM 21154 / JCM 14090 / 6A8) OX=456442 GN=hel308 PE=3 SV=1 Length=723 Score = 87.5 bits (215), Expect = 1e-16, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 91/227 (40%), Gaps = 17/227 (7%) Query 7 QWEVIMPAL-EGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q + L +GKN+++ +PT +GKT A RH+ +G K + +V L ++ E Sbjct 28 QAACVERGLLDGKNLLVAIPTASGKTLIAEMAMHRHI--ANGGKCLYIVPLKALASEKYE 85 Query 66 EFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF 125 EF + V +GD+ R +D+++ T+E + L + + Sbjct 86 EF---GNKGVKVGLSTGDLDRR---DDALGKNDIIVATSEKVDSLLRNGARW----IPDI 135 Query 126 SLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHV 185 +L+V+DE H D+ + + K++ P Q++GL+A+ G V Sbjct 136 TLVVIDEIHLI--DSPDRGPTLEMVIAKMRSKNPGMQLIGLSATIGNPKVLAGWLDAELV 193 Query 186 LQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDL 232 +D + + Q E +P KQ + + + Sbjct 194 TSSWRPVDLRQGVFY-DNRIQFAERM-RPVKQVSKNYDDLNLCLDTI 238 Score = 41.3 bits (95), Expect = 0.032, Method: Composition-based stats. Identities = 24/175 (14%), Positives = 61/175 (35%), Gaps = 30/175 (17%) Query 365 SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRA-----------------QLLIGAG 407 + + ++F +R++A + + + A + G Sbjct 239 AEGGQCLVFVSSRRNAEAFAKRAAGAIKSEDAALAACAERLLEGTPTEMVKTLAACVAKG 298 Query 408 NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV----RYG------ 457 + ++++++ V + F+ L + +T GL++P V++ R+ Sbjct 299 AAFHHAGLSRKERSIVEEAFRKNLLKCISSTPTLAAGLNLPARRVIIRDYLRFSAGEGMQ 358 Query 458 --LLTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAV 510 ++ M GR R D A + + + ++ EL +E E + + Sbjct 359 PIPVSEYRQMAGRAGRPRLDPYGEAVLIAKEAEQVP-ELFEVYIEAEAEDVHSRI 412 >sp|Q49VV6|UVRB_STAS1 UvrABC system protein B OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41) OX=342451 GN=uvrB PE=3 SV=1 Length=660 Score = 87.5 bits (215), Expect = 1e-16, Method: Composition-based stats. Identities = 89/608 (15%), Positives = 203/608 (33%), Gaps = 105/608 (17%) Query 26 TGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDG------------ 73 TG GKT + V K+ G +++ + L Q EF+ Sbjct 42 TGTGKTFTMSNVIKQV-----GKPTLIIAHNKTLAGQLYSEFKEFFPENRVEYFVSYYDY 96 Query 74 -------RWTVTTLSGDMGPRAGFGHL--------ARCHDLLICTAELLQMALTSPEEEE 118 T T + D L D+++ + L +PEE Sbjct 97 YQPEAYVPSTDTFIEKDASINDEIDQLRHSATSALFERDDVIVIASVSCIYGLGNPEEYR 156 Query 119 HVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLG-----LTASPGTG 173 + +++ + + +D K ++ QY + + +V G AS Sbjct 157 DLVVSIRAGMEMDRSELLKK-----LVDVQYTRNDIDFRRGTFRVRGDVVEIFPAS-REE 210 Query 174 GASKLDGAINHVLQL-CANLDTWCIMSPQNCCPQL-QEHSQQPCKQYNLCHRRSQDPFGD 231 +++ + + ++ N T ++ ++ H ++ +R ++ + Sbjct 211 MCIRVEFFGDEIDRIREVNYLTGEVLRERDHFAIFPASHFVTREEKMKSAIQRIENELEE 270 Query 232 LLKKL-MDQIHDHLEMPELSRKFGTQMYEQQVVK--LSEAAALAGLQEQRVYALHLRRYN 288 L +L + + E + +M + + + L+ L Y Sbjct 271 RLAELNAENKLLEAQRLEQRTNYDLEMMREMGFCSGIENYSVHLTLRPMGSTPYTLLDYF 330 Query 289 DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHL------- 341 + + L ++ Y+ + K ++ RL + D+R + Sbjct 331 GDDWLVMIDESHVTLPQIRGMYNGDRARKQVLVDHGFRLPSALDNRPLKFEEFEEKTKQL 390 Query 342 ----ATHGP-------------------ENPKLEM------LEKILQR-QFSSSNSPRGI 371 AT GP +PK+E+ ++ +L Q + R + Sbjct 391 VYVSATPGPFELEHTDEMVQQIIRPTGLLDPKIEVRPTENQIDDLLGEIQDRIDRNERVL 450 Query 372 IFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGT 431 + T T++ + L ++L++ G + + + ++ E+I+ + GT Sbjct 451 VTTLTKKMSEDLTIYLKEA--------------GIKVNYLHSEIKTLERIEIIRDLRMGT 496 Query 432 LNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAFVATEG 486 +++V ++ EG+DIP ++VV L ++ S+VQ GRA + + + Sbjct 497 YDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSQRSLVQTIGRAARNSRGEVIMYGDK 556 Query 487 SRELKRELINE-ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQ 545 + R ++E +++A + KI D+ A + Q+ + Sbjct 557 ITDSMRYALDETERRRTIQEAYNEKHNITPTTINKKIHDVISATVENDETNEQQQTEVPK 616 Query 546 QFPVEHVQ 553 + + + Sbjct 617 KMTKKERE 624 >sp|Q631I6|UVRB_BACCZ UvrABC system protein B OS=Bacillus cereus (strain ZK / E33L) OX=288681 GN=uvrB PE=3 SV=1 Length=658 Score = 87.5 bits (215), Expect = 1e-16, Method: Composition-based stats. Identities = 35/199 (18%), Positives = 78/199 (39%), Gaps = 20/199 (10%) Query 365 SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI 424 + + R +I T T++ + L +L+ +G + + + ++ E+I Sbjct 443 AKNERVLITTLTKKMSEDLTDYLKD--------------VGIKVNYLHSEVKTLERIEII 488 Query 425 QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGR-ARADQSV 478 + + G ++LV ++ EGLDIP ++V L +E S++Q GR AR + Sbjct 489 RDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNENGR 548 Query 479 YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA 538 A +R + + +++A + Q +RD+ +A + Sbjct 549 VIMYADRITRSMGIAIEETQRRRSIQEAYNEEYGITPKTIQKGVRDVIRATTAAEEPETY 608 Query 539 QRENQRQQFPVEHVQLLCI 557 + ++ E + + Sbjct 609 EATPAKKMTKKEREKTIAK 627 >sp|A3AVH5|RH13_ORYSJ DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0510400 PE=2 SV=2 Length=832 Score = 87.5 bits (215), Expect = 1e-16, Method: Composition-based stats. Identities = 42/236 (18%), Positives = 81/236 (34%), Gaps = 25/236 (11%) Query 313 EHVTKTQILCAERRLLALFDDR--KNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRG 370 E ++K + ++ L +L ++ K L IL R Sbjct 458 EALSKQARMKPNAEIVDLTKASILPEKLEESFIECSDDDKDAYLYYILSVH----GQGRT 513 Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 IIF + + L L+ ++G + M QR + + + +F++ Sbjct 514 IIFCTSIAALRHLSSILR--------------VLGINVLTNHAQMQQRARMKAVDRFRES 559 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRE 489 ++LVAT G+D V+ Y L + + GR AR + + + + Sbjct 560 ENSILVATDGFARGMDFDDVRTVIHYQLPHSTDVYIHRSGRTARKSMAGCSIALISPADK 619 Query 490 LKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQ 545 K + ++L Q +D A A + L A + + +EN + Sbjct 620 AKFYSLCKSLSKENLQQFP----VDHAYMPAVMNRLTLARQIDKITRKNSQENANK 671 Score = 51.0 bits (120), Expect = 3e-05, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 54/145 (37%), Gaps = 23/145 (16%) Query 13 PALEGKNIIIWLPTGAGKTRAAAY-VAKRHLETVDGA--------------------KVV 51 A +GK++I TG+GKT A + +R LE + A + + Sbjct 232 AAHQGKDVIGAAETGSGKTLAFGLPILQRLLEEQEKAMRLSREDESTQDENSRESPLRAL 291 Query 52 VLVNRVHLVTQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMA 110 +L L Q + + R V + G + L R ++++ T L Sbjct 292 ILTPTRELAKQVCDHLKEAAKFLRIQVVPIVGGLSMEKQERLLKRKPEIVVGTPGRLWEL 351 Query 111 LTSPEEEEHVELTVFSLIVVDECHH 135 +++ + ++L S V+DE Sbjct 352 MSTGNQH-LIKLHSLSFFVLDEADR 375 >sp|A2XVF7|RH13_ORYSI DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_016050 PE=3 SV=2 Length=832 Score = 87.5 bits (215), Expect = 1e-16, Method: Composition-based stats. Identities = 42/236 (18%), Positives = 81/236 (34%), Gaps = 25/236 (11%) Query 313 EHVTKTQILCAERRLLALFDDR--KNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRG 370 E ++K + ++ L +L ++ K L IL R Sbjct 458 EALSKQARMKPNAEIVDLTKASILPEKLEESFIECSDDDKDAYLYYILSVH----GQGRT 513 Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 IIF + + L L+ ++G + M QR + + + +F++ Sbjct 514 IIFCTSIAALRHLSSILR--------------VLGINVLTNHAQMQQRARMKAVDRFRES 559 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRE 489 ++LVAT G+D V+ Y L + + GR AR + + + + Sbjct 560 ENSILVATDGFARGMDFDDVRTVIHYQLPHSTDVYIHRSGRTARKSMAGCSIALISPADK 619 Query 490 LKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQ 545 K + ++L Q +D A A + L A + + +EN + Sbjct 620 AKFYSLCKSLSKENLQQFP----VDHAYMPAVMNRLTLARQIDKITRKNSQENANK 671 Score = 51.0 bits (120), Expect = 3e-05, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 54/145 (37%), Gaps = 23/145 (16%) Query 13 PALEGKNIIIWLPTGAGKTRAAAY-VAKRHLETVDGA--------------------KVV 51 A +GK++I TG+GKT A + +R LE + A + + Sbjct 232 AAHQGKDVIGAAETGSGKTLAFGLPILQRLLEEQEKAMRLSREDESTQDENSRESPLRAL 291 Query 52 VLVNRVHLVTQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMA 110 +L L Q + + R V + G + L R ++++ T L Sbjct 292 ILTPTRELAKQVCDHLKEAAKFLRIQVVPIVGGLSMEKQERLLKRKPEIVVGTPGRLWEL 351 Query 111 LTSPEEEEHVELTVFSLIVVDECHH 135 +++ + ++L S V+DE Sbjct 352 MSTGNQH-LIKLHSLSFFVLDEADR 375 >sp|B6J8A0|UVRB_COXB1 UvrABC system protein B OS=Coxiella burnetii (strain CbuK_Q154) OX=434924 GN=uvrB PE=3 SV=1 Length=672 Score = 87.5 bits (215), Expect = 1e-16, Method: Composition-based stats. Identities = 51/295 (17%), Positives = 106/295 (36%), Gaps = 29/295 (10%) Query 300 VDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATH-GPENPKLEMLEKIL 358 D L T + + R L P +++ L + Sbjct 379 FDEFEKLAPQTIFISATPGPYEEKQSDQVVELLVRPTGLIDPEIEVRPVATQVDDLLSEI 438 Query 359 QRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQR 418 ++ ++ + R ++ T T++ A L + + ++R + L + + Sbjct 439 KK--RAAQNERVLVTTLTKRMAEDLTEYFTEH------NVRVRYL--------HSDIDTV 482 Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRAR 473 ++ E+I+ + G ++LV ++ EGLDIP ++V L +E S++Q GRA Sbjct 483 ERVEIIRDLRLGVFDMLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTMGRAA 542 Query 474 ADQSVYAFVATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTK 532 + A + + + +KR + + + A + Q + ++ + A T Sbjct 543 RNVHGKAILYADRITDSMKRAMEEAERRRIAQSAYNEKHHITPKSIQKAVTEIIEGARTY 602 Query 533 RAAQAAQRENQRQQFPVEHVQLLCINCMVAVGHGSDLRKVEG-THHVNVNPNFSN 586 NQ Q E + + + +LRK+E +H N F Sbjct 603 TERGRFV--NQAQLIAEEEAKYIAMTPKQLA---KELRKLEEQMYHHARNLEFEE 652 >sp|Q0DBU5|RH31_ORYSJ DEAD-box ATP-dependent RNA helicase 31 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0526600 PE=3 SV=2 Length=547 Score = 86.8 bits (213), Expect = 2e-16, Method: Composition-based stats. Identities = 30/190 (16%), Positives = 69/190 (36%), Gaps = 27/190 (14%) Query 295 DTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEML 354 D VR V +A +D V + ++ +++ + P + + +L Sbjct 277 DEVRQVCHIAMKRDLEFVNTVEEGS------------EETHSQVKQMHVVAPLDKQFSIL 324 Query 355 EKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH 414 +L S + + I+F T + + L + + + Sbjct 325 YGLLTDHISENVDYKVIVFCTTAKVTSLVAELLSELK--------------LNVREIHSR 370 Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR 473 Q + + ++F++ +LV++ V+ G+D P+ +VV+ G+ T+ + GR R Sbjct 371 KPQSYRTRISKEFKESKGLILVSSDVSARGVDYPNVTLVVQMGVPTDREQYIHRLGRTGR 430 Query 474 ADQSVYAFVA 483 + Sbjct 431 RGNEGSGILL 440 Score = 50.2 bits (118), Expect = 5e-05, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 46/135 (34%), Gaps = 17/135 (13%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRHL----------ETVDGAKVVVLVNRVHLVTQHG 64 L+GK+++ TG GKT A + + + VVV+ L Q Sbjct 114 LKGKDVLAKAKTGTGKT-VAFLLPAIEVVSKLPPIDCDKKRPPISVVVVCPTRELADQAA 172 Query 65 EEFRRMLD--GRWTVTTLSG--DMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 E ++L V + G M H +L+ T L+ + + Sbjct 173 AEANKLLKFHPSIGVQLVIGGTRMALEQKRMH-TNPCQILVATPGRLKDHMENTPGFA-T 230 Query 121 ELTVFSLIVVDECHH 135 L ++++DE Sbjct 231 RLMGVKVLILDEADR 245 >sp|Q5RFQ5|DDX6_PONAB Probable ATP-dependent RNA helicase DDX6 OS=Pongo abelii OX=9601 GN=DDX6 PE=2 SV=1 Length=483 Score = 86.4 bits (212), Expect = 2e-16, Method: Composition-based stats. Identities = 49/335 (15%), Positives = 108/335 (32%), Gaps = 24/335 (7%) Query 190 ANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPEL 249 N+ I+ + Q+ + Q K + G L+ + ++ D + + Sbjct 163 DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMAT-TGGTNLRGDIMRLDDTVHVVIA 221 Query 250 SRKFGTQMYEQQVVKLSEAAALAGLQEQRVYAL-HLRRYNDALLIHDTVRAVDALAALQD 308 + + ++ V K+ + + ++ + ++ D +L R + +A Sbjct 222 TPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFP 281 Query 309 FYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSP 368 ++ + L + + + + + E K+ L FS Sbjct 282 LSVQKFMN--SHLQKPYEINLMEELTLKGVTQYYAYVTERQKV----HCLNTLFSRLQIN 335 Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 + IIF + Q L + Q +G M Q + V F+ Sbjct 336 QSIIFCNSSQRVELLAKKISQ--------------LGYSCFYIHAKMRQEHRNRVFHDFR 381 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFVATEGSR 488 +G LV T + G+DI NVV+ + + + G + + + +A Sbjct 382 NGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIG--GSGRFGHLGLAINLIT 439 Query 489 ELKRELINEALETLMEQAVAAVQKMDQAEYQAKIR 523 R + E L + +D++ Y A+ Sbjct 440 YDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYH 474 Score = 48.3 bits (113), Expect = 2e-04, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 63/167 (38%), Gaps = 14/167 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLE-TVDGAKVVVLVNRVHL---VTQ 62 Q E I AL G++I+ G GK+ A L+ D + +V+V L V+Q Sbjct 123 QEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQ 182 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 + + + G V +G R L ++I T + + ++ ++ Sbjct 183 ICIQVSKHMGGA-KVMATTGGTNLRGDIMRLDDTVHVVIATPGRILDLI----KKGVAKV 237 Query 123 TVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS 169 +IV+DE + IM + + Q+L +A+ Sbjct 238 DHVQMIVLDEADKLLSQD-FVQIMEDIILTLPKNR----QILLYSAT 279 >sp|Q0TXZ2|SUB2_PHANO ATP-dependent RNA helicase SUB2 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) OX=321614 GN=SUB2 PE=3 SV=1 Length=438 Score = 86.0 bits (211), Expect = 2e-16, Method: Composition-based stats. Identities = 34/226 (15%), Positives = 79/226 (35%), Gaps = 32/226 (14%) Query 304 AALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG--------PENPKLEMLE 355 A Q ++K ++ + + ++ L HG E K L Sbjct 231 AHKQVMMFSATLSKEIRAVCKKFMQNPLEIYVDDEKKLTLHGLQQFYVKLDEREKNRKLN 290 Query 356 KILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHM 415 +L + IIF R+ L L++ +++ + + Sbjct 291 DLLDNL----EFNQVIIFVRSTLRCTELDKLLRECNFP--------------STAVHSGI 332 Query 416 TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARAD 475 Q ++ + ++F++ + V+T + G+D+ NV + Y + + + GRA Sbjct 333 GQEERIKRYKEFKEFQTRICVSTDIFGRGIDVERINVAINYDMPDKADAYLHRVGRAGRF 392 Query 476 QS---VYAFVATEGSRELKR---ELINEALETLMEQAVAAVQKMDQ 515 + +FV+++ + + E + E +++ MD Sbjct 393 GTKGLSISFVSSQDDEAVLKAIEERFAAEIPEFPEDGISSASYMDN 438 Score = 48.3 bits (113), Expect = 2e-04, Method: Composition-based stats. Identities = 26/137 (19%), Positives = 47/137 (34%), Gaps = 16/137 (12%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG---AKVVVLVNRVHLVTQ- 62 Q I A+ G +++ +G GKT + ++ A ++V+ + L Q Sbjct 79 QQVTIPQAILGNDVLCQAKSGLGKTAVFVLATLQQMDEKPEPGVASILVMCHTRELAYQI 138 Query 63 --HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHD----LLICTAELLQMALTSPEE 116 F + L G P A L D +++ T + + Sbjct 139 RNEYNRFAKFLPDVKVGVFYGG--TPVAKDIELLSNKDTHPHIIVGTP----GRINALVR 192 Query 117 EEHVELTVFSLIVVDEC 133 + H+ L V+DEC Sbjct 193 DRHLRLANLKHFVLDEC 209 >sp|Q98I01|UVRB_RHILO UvrABC system protein B OS=Mesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099) OX=266835 GN=uvrB PE=3 SV=1 Length=870 Score = 87.5 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 67/173 (39%), Gaps = 24/173 (14%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 R ++ T++ A L +L +Q G + + ++ E+++ + Sbjct 442 RTLVTVLTKRMAEDLTEYLHEQ--------------GVRVRYMHSDIDTLERIEILRDLR 487 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAFVA 483 G ++LV ++ EGLDIP C V L +E S++Q GRA + + Sbjct 488 LGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILY 547 Query 484 TE---GSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKR 533 + GS E N E ME A + +++I D+ + K Sbjct 548 ADQVTGSMERAMAETNRRREKQME--WNAANGITPESVKSRISDILDSVYEKD 598 Score = 40.9 bits (94), Expect = 0.042, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 18/48 (38%), Gaps = 5/48 (10%) Query 26 TGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDG 73 TG+GKT A V + ++L L Q EF++ Sbjct 35 TGSGKTFTMAKVIEETQRP-----ALILAPNKTLAAQLYSEFKKFFPD 77 >sp|Q0SW76|UVRB_CLOPS UvrABC system protein B OS=Clostridium perfringens (strain SM101 / Type A) OX=289380 GN=uvrB PE=3 SV=1 Length=659 Score = 87.2 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 51/398 (13%), Positives = 137/398 (34%), Gaps = 30/398 (8%) Query 167 TASPGTGGASKLDGAINHVLQLCANL-DTWCIMSPQN---CCPQLQEHSQQPCKQYNLC- 221 + +P + A+ + + + L D +++ ++ +L++ + + Sbjct 241 SITPASHFAASEETLEKSISIIEDELEDRLKVLTAEDKILEAQRLKQRTNYDIEMIREMG 300 Query 222 HRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYA 281 + + + + +L M + F + E V A AG + ++ Sbjct 301 YCQGIENYSRILDGRMPGTPPQTLLDYFPEDFLMFIDESHVTLPQVRAMYAGDRSRKTSL 360 Query 282 LHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHL 341 + + ++ + + + L + L + Sbjct 361 VEFGFRLPCAFDNRPLKFSEFESKINQVVFVSATPGEYELDHSEIVAEQIIRPTGLLDPV 420 Query 342 ATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQ 401 P +++ L +QR R +I T T++ A L +L+ Sbjct 421 IEIRPIKGQIDDLYGEIQRT--VQRGFRVLITTLTKRMAEDLTKYLKD------------ 466 Query 402 LLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG---- 457 + + + + ++ ++I++ + G +++L+ ++ EGLDIP +V Sbjct 467 --LNVKATYMHSDIDTLERMKIIRELRLGEVDVLIGINLLREGLDIPEVALVAILDADKE 524 Query 458 -LLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQ 515 L +E S++Q GR AR +S A ++ + + + +++ + Sbjct 525 GFLRSETSLIQTIGRAARNSESKVIMYADNITKSMDKSIKETERRRVIQMEYNEEHNITP 584 Query 516 AEYQAKIRDLQQAALTKRAA---QAAQRENQRQQFPVE 550 +RD+ +A ++ ++ ++ P+E Sbjct 585 TTVIKGVRDIIEATKVSEEKENYESEVKKAAKKDIPIE 622 >sp|O59025|HELS_PYRHO ATP-dependent DNA helicase Hel308 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) OX=70601 GN=hel308 PE=3 SV=1 Length=715 Score = 87.2 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 42/170 (25%), Positives = 68/170 (40%), Gaps = 14/170 (8%) Query 7 QWEVIMPA-LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q E + L+G+N +I +PT +GKT A L +G K V LV L + + Sbjct 28 QAEALTSGILKGENALIAIPTASGKTLIAEIAIVNRL-LKEGGKAVYLVPLKALAEEKFK 86 Query 66 EFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF 125 EF+ + V +GD + + +D++I TAE L + Sbjct 87 EFKDWEELGLKVAMATGDYDSKDEW---LGGYDIIIATAEKFDSLL----RHGSSWIRNV 139 Query 126 SLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGA 175 ++VVDE H LE + + Q++GL+A+ G Sbjct 140 KVLVVDEIHLIGSRD-----RGATLEFIITQMLNRAQIIGLSATIGNPEE 184 Score = 44.0 bits (102), Expect = 0.005, Method: Composition-based stats. Identities = 32/192 (17%), Positives = 67/192 (35%), Gaps = 33/192 (17%) Query 347 ENPKLEMLEKILQRQFSSSNSPRG-IIFTRTRQSAHS--------LLLWLQQQQGLQTVD 397 E+ K E + + + +G ++F R+ A + +L +++ + + Sbjct 216 EDGKTEKFNSWEELVYDAIKRSKGSLVFVNMRRKAEKTALELSKKIRNFLTKKELRELKE 275 Query 398 I-----------RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLD 446 + + + G + + + ++ V + F+ G + ++VAT G++ Sbjct 276 LAESLEENPTNEKLAKALQGGVAFHHAGLGREERVLVEENFKKGLIKVVVATPTLSAGIN 335 Query 447 IPHCNVVVR-------YGLLTNEISMV-QARGRARAD-----QSVYAFVATEGSRELKRE 493 P V+VR +G+ I + Q GRA TE + Sbjct 336 TPAFRVIVRDTWRYSEFGMERIPILEIQQMMGRAGRPKYDEVGEAIIVSTTEEPSTVMER 395 Query 494 LINEALETLMEQ 505 I E L Q Sbjct 396 YIKGKPEKLFSQ 407 >sp|Q0HR19|RAPA_SHESR RNA polymerase-associated protein RapA OS=Shewanella sp. (strain MR-7) OX=60481 GN=rapA PE=3 SV=1 Length=968 Score = 87.5 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 75/452 (17%), Positives = 151/452 (33%), Gaps = 40/452 (9%) Query 27 GAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGP 86 G GKT A + + L T +V+++V L Q E R + R++V + Sbjct 179 GLGKTIEAGLIIHQQLLTGRAERVLIIVPD-TLRHQWLVEMLRRFNLRFSVFDEDRCVEA 237 Query 87 RAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHT--HKDTVYNV 144 A + L+IC+ L + + + L+VVDE HH ++ Sbjct 238 FADHDNPFYTEQLVICS----LELLRKKKRLDQALDADWDLLVVDEAHHLEWTEEAPSRA 293 Query 145 IMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCC 204 ++ ++ +P VL LTA+P G +H +L LD Sbjct 294 -----YQVVEALSEVVPGVLLLTATP------DQLGHESHFARL-RLLDPDRFYDYDAFL 341 Query 205 PQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVK 264 + E+S + D + ++ ++ R + + ++ + Sbjct 342 AE--ENSYKDVA-VAAEALAGDAKLSDAAINSLTELLSEKDIAPSIRLIQAEDIDSELQQ 398 Query 265 LSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAE 324 + + L L ++ L R + A + R +A + +++ Sbjct 399 AARSELLQELLDRHGTGRVLYRNSRASVKGFPKRIFNAYPHAMPEQYLTAARVNEMMGGR 458 Query 325 RRL---LALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAH 381 + L A + + K + L S S + +I +A Sbjct 459 KTLEAKAAQALSPEKLYQEFEDNSASWWKFDPRVDWLIEFLKSHRSKKVLIIASGADTAL 518 Query 382 SLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF--QDGTLNLLVATS 439 SL L+ ++G+Q M+ ++ + F ++G L+ + Sbjct 519 SLEEALRTREGIQATVFH-------------EGMSIIERDKAGAYFAQEEGGAQALICSE 565 Query 440 VAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 + EG + + +V + L N + Q GR Sbjct 566 IGSEGRNFQFASHLVLFDLPLNPDLLEQRIGR 597 >sp|Q59N29|SPB4_CANAL ATP-dependent rRNA helicase SPB4 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=SPB4 PE=3 SV=1 Length=631 Score = 86.8 bits (213), Expect = 2e-16, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 63/172 (37%), Gaps = 16/172 (9%) Query 321 LCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSA 380 + ++ + K+ PE K+ L IL + + I++ T S Sbjct 237 VKSKNYFGEQSNSPKSLQLSYMMINPEL-KITTLLTILSKYQYK----KAIVYFPTCTSV 291 Query 381 HSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN----LLV 436 + ++ D + S + + + + + F G +N +L+ Sbjct 292 KHFYQIFNKVYQQESSDEPLKFF------SLHGQLNTKSRLKTLDNFTQGDINLYKHILM 345 Query 437 ATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGS 487 T VA G+DIP ++V++ T+ + GR RA++ A V + Sbjct 346 TTDVAARGIDIPDVDLVIQIDPPTDPNVFLHRCGRTGRANKVGRAIVMLNDN 397 Score = 35.5 bits (80), Expect = 2.0, Method: Composition-based stats. Identities = 24/141 (17%), Positives = 48/141 (34%), Gaps = 28/141 (20%) Query 18 KNIIIWLPTGAGKTR---AAAY--VAKRHLETVDGA-----------KVVVLVNRVHLVT 61 K++++ TG+GKT ++ R + +VL L Sbjct 48 KDVVVEAVTGSGKTLSFVIPVLQKISDRLYKPDSDGDLPEPVKRGHMLSIVLSPTRELAN 107 Query 62 QHGEEFRRML-------DGRWTVTTLSGDMGPRAGFGHLARCH--DLLICTAELLQMALT 112 Q F ++L R L G +G + + +LI T + L Sbjct 108 QIQSVFNQVLQYLPEDKGTRINTQLLVGSIGNVREDLNQFLTNQPQILIGTPGRILEFLG 167 Query 113 SPEEEEHVELTVFSLIVVDEC 133 S + ++ + ++++DE Sbjct 168 SSQS---IKTSSLEIVILDEA 185 >sp|Q5WDG7|UVRB_SHOC1 UvrABC system protein B OS=Shouchella clausii (strain KSM-K16) OX=66692 GN=uvrB PE=3 SV=1 Length=660 Score = 86.8 bits (213), Expect = 2e-16, Method: Composition-based stats. Identities = 38/214 (18%), Positives = 81/214 (38%), Gaps = 33/214 (15%) Query 359 QRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQR 418 Q + R ++ T T++ A L +L++ IG + + Sbjct 437 QIHDQIAKDERVLVTTLTKKMAEDLTDYLKE--------------IGIKVRYLHSEVKTL 482 Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRAR 473 ++ E+I++ + GT ++L+ ++ EG+DIP ++V L E S++Q GRA Sbjct 483 ERLEIIRQLRLGTFDVLIGINLLREGIDIPEVSLVAILDADKEGFLRAERSLIQTIGRAA 542 Query 474 ADQSVYAFVATEG---------SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKI-- 522 + + + + + +R I +A +QK QA Sbjct 543 RNANGRVIMYADKMTHSMEVAINETKRRRQIQQAYNEQHGITPQTIQKRIPEVVQATYAA 602 Query 523 ---RDLQQAALTKRAAQAAQRENQRQQFPVEHVQ 553 D + ++ + + +R+ ++ E Q Sbjct 603 EETGDYKASSTSSKKLGKKERQATIERVEAEMKQ 636 >sp|Q0HMR2|RAPA_SHESM RNA polymerase-associated protein RapA OS=Shewanella sp. (strain MR-4) OX=60480 GN=rapA PE=3 SV=1 Length=968 Score = 87.2 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 75/452 (17%), Positives = 151/452 (33%), Gaps = 40/452 (9%) Query 27 GAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGP 86 G GKT A + + L T +V+++V L Q E R + R++V + Sbjct 179 GLGKTIEAGLIIHQQLLTGRAERVLIIVPD-TLRHQWLVEMLRRFNLRFSVFDEDRCVEA 237 Query 87 RAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHT--HKDTVYNV 144 A + L+IC+ L + + + L+VVDE HH ++ Sbjct 238 FADHDNPFYTEQLVICS----LELLRKKKRLDQALDADWDLLVVDEAHHLEWTEEAPSRA 293 Query 145 IMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCC 204 ++ ++ +P VL LTA+P G +H +L LD Sbjct 294 -----YQVVEALSEVVPGVLLLTATP------DQLGHESHFARL-RLLDPDRFYDYDAFL 341 Query 205 PQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVK 264 + E+S + D + ++ ++ R + + ++ + Sbjct 342 AE--ENSYKDVA-VAAEALAGDAKLSDAAINSLTELLSEKDIAPSIRLIQAEDIDSELQQ 398 Query 265 LSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAE 324 + + L L ++ L R + A + R +A + +++ Sbjct 399 AARSELLQELLDRHGTGRVLYRNSRASVKGFPKRIFNAYPHAMPEQYLTAARVNEMMGGR 458 Query 325 RRL---LALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAH 381 + L A + + K + L S S + +I +A Sbjct 459 KTLEAKAAQALSPEKLYQEFEDNSASWWKFDPRVDWLIEFLKSHRSKKVLIIASGADTAL 518 Query 382 SLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF--QDGTLNLLVATS 439 SL L+ ++G+Q M+ ++ + F ++G L+ + Sbjct 519 SLEEALRTREGIQATVFH-------------EGMSIIERDKAGAYFAQEEGGAQALICSE 565 Query 440 VAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 + EG + + +V + L N + Q GR Sbjct 566 IGSEGRNFQFASHLVLFDLPLNPDLLEQRIGR 597 >sp|P32639|BRR2_YEAST Pre-mRNA-splicing helicase BRR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=BRR2 PE=1 SV=2 Length=2163 Score = 87.5 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 45/177 (25%), Positives = 75/177 (42%), Gaps = 20/177 (11%) Query 7 QWEVIMPALEG-KNIIIWLPTGAGKTRAAAY-VAKRHLETVDGA---------KVVVLVN 55 Q +V A EG N++I PTG+GKT A V K + K+V + Sbjct 503 QSKVFHAAFEGDSNMLICAPTGSGKTNIALLTVLKALSHHYNPKTKKLNLSAFKIVYIAP 562 Query 56 RVHLVTQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP 114 LV + EF+R L V L+GD R + +L+ T E +T+ Sbjct 563 LKALVQEQVREFQRRLAFLGIKVAELTGD--SRLSRKQIDET-QVLVSTPEKW--DITTR 617 Query 115 EEEEHVELTVFSLIVVDECH--HTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS 169 + + L+++DE H H + V I+++ + Q P+++GL+A+ Sbjct 618 NSNNLAIVELVRLLIIDEIHLLHDDRGPVLESIVARTFWAS-KYGQEYPRIIGLSAT 673 Score = 47.1 bits (110), Expect = 6e-04, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 57/161 (35%), Gaps = 36/161 (22%) Query 363 SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQ--------------------- 401 S + + I+F +R+ WL+ + + + + Sbjct 733 SINEGNQIIVFVHSRKETSRTATWLKNKFAEENITHKLTKNDAGSKQILKTEAANVLDPS 792 Query 402 --LLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVR---- 455 LI +G + +T+ D+ F DG L +LV T+ G+++P V+++ Sbjct 793 LRKLIESGIGTHHAGLTRSDRSLSEDLFADGLLQVLVCTATLAWGVNLPAHTVIIKGTDV 852 Query 456 YGL---------LTNEISMVQARGRARADQSVYAFVATEGS 487 Y + + M+ GR R D + T+ S Sbjct 853 YSPEKGSWEQLSPQDVLQMLGRAGRPRYDTFGEGIIITDQS 893 Score = 40.9 bits (94), Expect = 0.055, Method: Composition-based stats. Identities = 28/134 (21%), Positives = 50/134 (37%), Gaps = 14/134 (10%) Query 7 QWEVIMPALEGKNIIIWLPTG--AGKTRAAAYVAKRHLETVDGAKVVVLVNRVH----LV 60 Q +V +L N +++ +G GKT A H + + V + L+ Sbjct 1352 QSQVFE-SLYNSNDSVFVGSGKGTGKTAMAELALLNHWRQ-NKGRAVYINPSGEKIDFLL 1409 Query 61 TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 + + F L G + L D P LA+ H +L+ T + L S + Sbjct 1410 SDWNKRF-SHLAGGKIINKLGND--PSLNLKLLAKSH-VLLATPVQFE--LLSRRWRQRK 1463 Query 121 ELTVFSLIVVDECH 134 + L++ D+ H Sbjct 1464 NIQSLELMIYDDAH 1477 >sp|Q6CXB7|HAS1_KLULA ATP-dependent RNA helicase HAS1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=HAS1 PE=3 SV=1 Length=497 Score = 86.0 bits (211), Expect = 2e-16, Method: Composition-based stats. Identities = 28/170 (16%), Positives = 52/170 (31%), Gaps = 17/170 (10%) Query 357 ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT 416 +L + + I+F + S L +D+ L G Sbjct 271 LLFSFLKRNQKKKVIVFLSSCNSVKYYAELL------NYIDLPVLELHG--------KQK 316 Query 417 QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQ 476 Q+ + +F + +LV T VA GLDIP + ++++ + + GR Sbjct 317 QQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGT 376 Query 477 SVY---AFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIR 523 T R L + + QA+ + I+ Sbjct 377 KGKGKSLMFLTPTELGFLRYLKAAKVPLNEYEFPTNKIANVQAQLEKLIK 426 Score = 58.3 bits (139), Expect = 2e-07, Method: Composition-based stats. Identities = 31/135 (23%), Positives = 49/135 (36%), Gaps = 9/135 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTR---AAAYVAKRHLETVD--GAKVVVLVNRVHLVT 61 Q I P L GK+++ TG+GKT A L+ G V+V+ L Sbjct 61 QTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRNGTGVIVITPTRELAL 120 Query 62 QHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 Q R +++ + G R L + ++LI T L L + + Sbjct 121 QIFGVARELMEFHSQTFGIVIGGANRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFK 180 Query 121 ELTVFSLIVVDECHH 135 L +V+DE Sbjct 181 NLKA---LVIDEADR 192 >sp|Q9W3Y5|Y4443_DROME Putative ATP-dependent RNA helicase CG14443 OS=Drosophila melanogaster OX=7227 GN=CG14443 PE=3 SV=2 Length=736 Score = 86.8 bits (213), Expect = 2e-16, Method: Composition-based stats. Identities = 34/192 (18%), Positives = 68/192 (35%), Gaps = 20/192 (10%) Query 349 PKLEMLEKILQRQFSSSNSP-RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG 407 K+E L K L + +S+ P + +I+ + ++ L+ ++ + + Sbjct 560 SKVERLMKELTAIYDTSDIPGKVVIYVKRQKVVEELVDLIRNCVPCEGI----------- 608 Query 408 NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 T ++ Q +I F G N++VAT + LD+P V+ Y N VQ Sbjct 609 ----HGGRTAQENQGIIHDFGTGAYNIIVATQMTSNCLDVPGIRYVINYDFPDNIDKYVQ 664 Query 468 ARGRAR----ADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIR 523 R T + +L E+++ E +Q ++ + + R Sbjct 665 RMSRTGCLSYNRNCEVISFFTMANYKLVTEVVDFLKICKQEIGPHLLQLAEEKMFGPRQR 724 Query 524 DLQQAALTKRAA 535 + R Sbjct 725 RRHRPQRYNRMH 736 >sp|Q7N6Q1|UVRB_PHOLL UvrABC system protein B OS=Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01) OX=243265 GN=uvrB PE=3 SV=1 Length=669 Score = 86.8 bits (213), Expect = 2e-16, Method: Composition-based stats. Identities = 37/253 (15%), Positives = 88/253 (35%), Gaps = 22/253 (9%) Query 307 QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSN 366 Q Y K ++ + ++ L P +++ L ++ + Sbjct 388 QTIYISATPGKYELEKSSGDVVEQVVRPTGLLDPEVEVRPVATQVDDLLSEIR--IRAVK 445 Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R ++ T T++ A L +L++ G + + ++ E+I+ Sbjct 446 NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERVEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + A Sbjct 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLHGKAI 551 Query 482 VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR 540 + + + + + + +Q + KI D+ Q + + Sbjct 552 LYGDKITDSMAKAIGETERRRAKQQIFNEKHGIVPKGLNKKINDILQIGQPAGGKRKGRG 611 Query 541 ENQRQQFPVEHVQ 553 + ++ Sbjct 612 KAVATAETFSNLS 624 Score = 36.7 bits (83), Expect = 0.84, Method: Composition-based stats. Identities = 16/71 (23%), Positives = 24/71 (34%), Gaps = 8/71 (11%) Query 2 ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVT 61 +R Q E + L + ++ TG+GKT A V +VL L Sbjct 20 AIRQLQ-EGLEDGLAHQTLLGV--TGSGKTFTVANVIANL-----NRPTMVLAPNKTLAA 71 Query 62 QHGEEFRRMLD 72 Q E + Sbjct 72 QLYSEMKDFFP 82 >sp|A1DMT9|MAK5_NEOFI ATP-dependent RNA helicase mak5 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=mak5 PE=3 SV=1 Length=777 Score = 86.8 bits (213), Expect = 2e-16, Method: Composition-based stats. Identities = 33/139 (24%), Positives = 53/139 (38%), Gaps = 22/139 (16%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K L +L R ++FT + + L LQ Q Sbjct 493 KDLFLYTLLLYH----PKHRTLVFTNSISAVRRLTKLLQTLQLPAL-------------- 534 Query 410 SQSTHMTQRDQQEVIQKFQDGTLN---LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV 466 + + M Q+ + +++F + + +LVAT VA GLDI N+V+ Y + V Sbjct 535 ALHSSMAQKARLRSVERFSSPSSDPSTILVATDVAARGLDIKGINLVIHYHAPRTADTYV 594 Query 467 QARGR-ARADQSVYAFVAT 484 GR ARA S + + Sbjct 595 HRSGRTARAGASGKSVIIC 613 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 28/141 (20%), Positives = 51/141 (36%), Gaps = 22/141 (16%) Query 15 LEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVD-------GAK--------VVVLVNRVH 58 LEG ++I TG+GKT A + + +LE K ++L Sbjct 236 LEGHDVIGKASTGSGKTLAFGIPILEHYLEKKRDDISAEKEKKSEKDSTPIALILSPTRE 295 Query 59 LVTQHGEEFRRMLDGRWTV----TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP 114 L Q + ++ V L+G + + L D++I T + L++ Sbjct 296 LAHQLSKHIGELIAQAPGVNARIALLTGGLSVQKQ-QRLLSGADIVIGTPGRVWEILSTG 354 Query 115 EEEEHVELTVFSLIVVDECHH 135 + ++ +VVDE Sbjct 355 QGL-IRKMQQIKFLVVDEADR 374 >sp|Q4IBS2|MAK5_GIBZE ATP-dependent RNA helicase MAK5 OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=MAK5 PE=3 SV=2 Length=781 Score = 86.8 bits (213), Expect = 2e-16, Method: Composition-based stats. Identities = 25/132 (19%), Positives = 49/132 (37%), Gaps = 15/132 (11%) Query 365 SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI 424 + R ++FT + + L L + M Q+ + + Sbjct 504 NPGRRTLVFTNSISAVRRLTPLLTNLNLTALP--------------LHSQMAQKARHRSL 549 Query 425 QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVA 483 ++F ++L+AT VA GLDI + V+ Y + + + + GR AR + S + + Sbjct 550 ERFTASRNSILIATDVAARGLDIKEVDQVLHYHVPRSADTYIHRSGRTARGESSGISVIL 609 Query 484 TEGSRELKRELI 495 L + Sbjct 610 CAPEEVLPTRRL 621 Score = 44.4 bits (103), Expect = 0.004, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 41/130 (32%), Gaps = 14/130 (11%) Query 17 GKNIIIWLPTGAGKTRAAA--------YVAKRHLETVDGAKVVVLVNRVHLVTQ---HGE 65 G ++I TG+GKT A + G +VL L Q H + Sbjct 252 GHDVIGKAQTGSGKTL-AFGIPMVERWLEMQEQGVKRTGPMSLVLSPTRELAKQLGDHLK 310 Query 66 EFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF 125 L V ++G + D++I T L L+ + + Sbjct 311 ALCDGLPSAPYVCVVTGGLSI-LKQQRQLEKADIVIGTPGRLWEVLS-GDRALQSKFAKI 368 Query 126 SLIVVDECHH 135 +VVDE Sbjct 369 RFLVVDEADR 378 >sp|A1CTL8|MAK5_ASPCL ATP-dependent RNA helicase mak5 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=mak5 PE=3 SV=1 Length=774 Score = 86.8 bits (213), Expect = 2e-16, Method: Composition-based stats. Identities = 29/139 (21%), Positives = 51/139 (37%), Gaps = 22/139 (16%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K L +L R ++FT + + + + Sbjct 490 KDLFLYTLLLYH----PKHRTLVFTNSISAVRR--------------LAQLLQALQLPAL 531 Query 410 SQSTHMTQRDQQEVIQKFQDGTLN---LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV 466 + + M Q+ + +++F T N +L+AT VA GLDI ++V+ Y + V Sbjct 532 ALHSSMAQKARLRSVERFSSPTANPGTILIATDVAARGLDIKGIDLVIHYHAPRTADTYV 591 Query 467 QARGR-ARADQSVYAFVAT 484 GR ARA S + + Sbjct 592 HRSGRTARAGASGKSVIIC 610 Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 52/141 (37%), Gaps = 22/141 (16%) Query 15 LEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVD-------GAK--------VVVLVNRVH 58 L+G +++ TG+GKT A + + +LE G K ++L Sbjct 233 LDGHDVVGKASTGSGKTLAFGIPILEHYLEKNRDGHGDIIGKKDKKDSTPIALILSPTRE 292 Query 59 LVTQHGEEFRRMLDGRWTV----TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP 114 L Q + ++ V L+G + + L D++I T + +++ Sbjct 293 LAHQLAKHIGELVTQAPGVNARIALLTGGLSVQKQ-QRLLAGADIVIGTPGRVWEIMSTG 351 Query 115 EEEEHVELTVFSLIVVDECHH 135 + ++ +VVDE Sbjct 352 QGL-IRKMQKIKFLVVDEADR 371 >sp|Q759L6|SUB2_EREGS ATP-dependent RNA helicase SUB2 OS=Eremothecium gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=SUB2 PE=3 SV=1 Length=438 Score = 85.6 bits (210), Expect = 3e-16, Method: Composition-based stats. Identities = 35/222 (16%), Positives = 66/222 (30%), Gaps = 33/222 (15%) Query 310 YHREHVTKTQILCAERRLLALFDDRKNELAHLATHG--------PENPKLEMLEKILQRQ 361 +++ R L + ++ A L HG E K L ++L Sbjct 237 MFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIRLEEREKNRKLAQLLDDL 296 Query 362 FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ 421 + IIF ++ A+ L L HM Q ++ Sbjct 297 ----EFNQVIIFVKSTLRANELTKLLNASNFPAIT--------------VHGHMRQEERI 338 Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARA-DQSVYA 480 + F++ + V+T V G+DI N+ + Y + + + GRA A Sbjct 339 ARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPSEADQYLHRVGRAGRFGTKGLA 398 Query 481 FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKI 522 + E L + E+ + + + Sbjct 399 ISLVSSKDD------EEVLAKIQERFDVKITEFPEEGVDPST 434 Score = 50.6 bits (119), Expect = 3e-05, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 51/135 (38%), Gaps = 14/135 (10%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQ--- 62 Q I ++ G +++ +G GKT + L+ V G VVVL N L Q Sbjct 81 QQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVSVVVLCNARELAYQIRN 140 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHD----LLICTAELLQMALTSPEEEE 118 F + + T G L + D +++ T L+ + + Sbjct 141 EYLRFSKYMPDVKTAVFYGG--TDTRKDIELLKNKDTAPHIVVATPGRLK----ALVRDN 194 Query 119 HVELTVFSLIVVDEC 133 +++L+ V+DEC Sbjct 195 NIDLSHVKNFVIDEC 209 >sp|Q8PZR7|HELS_METMA ATP-dependent DNA helicase Hel308 OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) OX=192952 GN=hel308 PE=3 SV=1 Length=730 Score = 86.8 bits (213), Expect = 3e-16, Method: Composition-based stats. Identities = 45/176 (26%), Positives = 74/176 (42%), Gaps = 12/176 (7%) Query 1 MELRSYQWEVIMPAL-EGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHL 59 +EL Q E + L EGKN++ +PT +GKT A + + ++G K + +V L Sbjct 22 LELYPPQAEAVEKGLLEGKNLLAAIPTASGKTLLAELAMLKSV--LNGGKALYIVPLRAL 79 Query 60 VTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 ++ F+ V +GD R +D+++ T+E L E Sbjct 80 ASEKFRRFQEFSVLGMRVGISTGDYDRR---DEGLGINDIIVATSEKTDSLL----RNET 132 Query 120 VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGA 175 + S++V DE H D+ + KL+R P QVL L+A+ G Sbjct 133 AWMQEISVVVADEVHLI--DSPDRGPTLEITLSKLRRMNPSCQVLALSATVGNADE 186 Score = 40.6 bits (93), Expect = 0.057, Method: Composition-based stats. Identities = 32/227 (14%), Positives = 77/227 (34%), Gaps = 20/227 (9%) Query 262 VVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQD---FYHREHVTKT 318 + +++ + + L A L + DA L+ R D + + FY ++ Sbjct 165 LRRMNPSCQVLALSATVGNADELAAWLDAELVLSEWRPTDLMEGVFYNGIFYCKDKEKPV 224 Query 319 QILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQ 378 + + + D K L + +K + + ++ R+ Sbjct 225 GQPTKDEAVNLVLDTIKEGGQCLVFESSRKNCMGFAKKAVSAVKKTLSN-------EDRE 277 Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT 438 + + + + + A + +G + +T ++ V F++G + ++ +T Sbjct 278 TLAGIADEIIENSETDVSSVLATC-VRSGTAFHHAGLTTPLRELVENGFREGRIKIISST 336 Query 439 SVAEEGLDIPHCNVVV----RYGL-----LTNEISMVQARGRARADQ 476 GL++P V++ RY + Q GRA + Sbjct 337 PTLAAGLNLPARRVIIRSYRRYSSDSGMQPIPVLEYKQMAGRAGRPR 383 >sp|C4K0Z4|UVRB_RICPU UvrABC system protein B OS=Rickettsia peacockii (strain Rustic) OX=562019 GN=uvrB PE=3 SV=1 Length=661 Score = 86.4 bits (212), Expect = 3e-16, Method: Composition-based stats. Identities = 36/184 (20%), Positives = 76/184 (41%), Gaps = 24/184 (13%) Query 346 PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 P ++E L +Q + R ++ T T++ A L +LQ+ + Sbjct 426 PATNQVEDLISEIQTT--IAQGFRVLVTTLTKKMAEDLTAYLQELK-------------- 469 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLT 460 S +++ ++ E+++ + GT+++LV ++ EGLDIP C +V L Sbjct 470 YKTSYLHSNVHTLERIEILRDLRQGTIDVLVGINLLREGLDIPECGLVAILDADKEGFLR 529 Query 461 NEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA 520 +E+S++Q GRA + + + + ++ + + ETL + + Sbjct 530 SEVSLIQTIGRAARNSAGRVILYAD---KMTKSIDKAVSETLRRRQIQQEYNEKHGIIPK 586 Query 521 KIRD 524 I Sbjct 587 TINR 590 >sp|Q92J03|UVRB_RICCN UvrABC system protein B OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) OX=272944 GN=uvrB PE=3 SV=1 Length=661 Score = 86.4 bits (212), Expect = 3e-16, Method: Composition-based stats. Identities = 36/184 (20%), Positives = 76/184 (41%), Gaps = 24/184 (13%) Query 346 PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 P ++E L +Q + R ++ T T++ A L +LQ+ + Sbjct 426 PATNQVEDLISEIQTTI--AQGFRVLVTTLTKKMAEDLTAYLQELK-------------- 469 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLT 460 S +++ ++ E+++ + GT+++LV ++ EGLDIP C +V L Sbjct 470 YKTSYLHSNVHTLERIEILRDLRQGTIDVLVGINLLREGLDIPECGLVAILDADKEGFLR 529 Query 461 NEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA 520 +E+S++Q GRA + + + + ++ + + ETL + + Sbjct 530 SEVSLIQTIGRAARNSAGRVILYAD---KMTKSIDKAVSETLRRRQIQQEYNEKHGIIPK 586 Query 521 KIRD 524 I Sbjct 587 TINR 590 >sp|A8GR53|UVRB_RICRS UvrABC system protein B OS=Rickettsia rickettsii (strain Sheila Smith) OX=392021 GN=uvrB PE=3 SV=1 Length=661 Score = 86.4 bits (212), Expect = 3e-16, Method: Composition-based stats. Identities = 36/184 (20%), Positives = 76/184 (41%), Gaps = 24/184 (13%) Query 346 PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 P ++E L +Q + R ++ T T++ A L +LQ+ + Sbjct 426 PATNQVEDLISEIQTT--IAQGFRVLVTTLTKKMAEDLTAYLQELK-------------- 469 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLT 460 S +++ ++ E+++ + GT+++LV ++ EGLDIP C +V L Sbjct 470 YKTSYLHSNVHTLERIEILRDLRQGTIDVLVGINLLREGLDIPECGLVAILDADKEGFLR 529 Query 461 NEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA 520 +E+S++Q GRA + + + + ++ + + ETL + + Sbjct 530 SEVSLIQTIGRAARNSAGRVILYAD---KMTKSIDKAVSETLRRRQIQQEYNEKHGIIPK 586 Query 521 KIRD 524 I Sbjct 587 TINR 590 >sp|B0BWK0|UVRB_RICRO UvrABC system protein B OS=Rickettsia rickettsii (strain Iowa) OX=452659 GN=uvrB PE=3 SV=1 Length=661 Score = 86.4 bits (212), Expect = 3e-16, Method: Composition-based stats. Identities = 36/184 (20%), Positives = 76/184 (41%), Gaps = 24/184 (13%) Query 346 PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 P ++E L +Q + R ++ T T++ A L +LQ+ + Sbjct 426 PATNQVEDLISEIQTT--IAQGFRVLVTTLTKKMAEDLTAYLQELK-------------- 469 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLT 460 S +++ ++ E+++ + GT+++LV ++ EGLDIP C +V L Sbjct 470 YKTSYLHSNVHTLERIEILRDLRQGTIDVLVGINLLREGLDIPECGLVAILDADKEGFLR 529 Query 461 NEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA 520 +E+S++Q GRA + + + + ++ + + ETL + + Sbjct 530 SEVSLIQTIGRAARNSAGRVILYAD---KMTKSIDKAVSETLRRRQIQQEYNEKHGIIPK 586 Query 521 KIRD 524 I Sbjct 587 TINR 590 >sp|Q03532|HAS1_YEAST ATP-dependent RNA helicase HAS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=HAS1 PE=1 SV=1 Length=505 Score = 86.0 bits (211), Expect = 3e-16, Method: Composition-based stats. Identities = 26/170 (15%), Positives = 52/170 (31%), Gaps = 17/170 (10%) Query 357 ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT 416 +L + + I+F + S L +D+ L G Sbjct 279 LLFSFLKRNQKKKIIVFLSSCNSVKYYAELL------NYIDLPVLELHG--------KQK 324 Query 417 QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQ 476 Q+ + +F + +L+ T VA GLDIP + ++++ + + GR Sbjct 325 QQKRTNTFFEFCNAERGILICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGT 384 Query 477 SVY---AFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIR 523 T R L + + Q++ + I+ Sbjct 385 KGKGKSLMFLTPNELGFLRYLKASKVPLNEYEFPENKIANVQSQLEKLIK 434 Score = 56.3 bits (134), Expect = 7e-07, Method: Composition-based stats. Identities = 28/135 (21%), Positives = 49/135 (36%), Gaps = 9/135 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT---RAAAYVAKRHLETVD--GAKVVVLVNRVHLVT 61 Q I P L G++++ TG+GKT A L+ G ++V+ L Sbjct 69 QARTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIELLHSLKFKPRNGTGIIVITPTRELAL 128 Query 62 QHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 Q R +++ + G R L + ++LI T L L + + Sbjct 129 QIFGVARELMEFHSQTFGIVIGGANRRQEAEKLMKGVNMLIATPGRLLDHLQNTKGFVFK 188 Query 121 ELTVFSLIVVDECHH 135 L +++DE Sbjct 189 NLKA---LIIDEADR 200 >sp|Q3JC03|UVRB_NITOC UvrABC system protein B OS=Nitrosococcus oceani (strain ATCC 19707 / BCRC 17464 / JCM 30415 / NCIMB 11848 / C-107) OX=323261 GN=uvrB PE=3 SV=1 Length=687 Score = 86.4 bits (212), Expect = 3e-16, Method: Composition-based stats. Identities = 37/215 (17%), Positives = 91/215 (42%), Gaps = 22/215 (10%) Query 346 PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 P +++ L +++ ++ R ++ T++ A L +L+Q + +R + L Sbjct 426 PAGSQVDDLLSEIRQ--RTAADERVLVTVLTKRMAEDLTQYLEQHE------VRVRYL-- 475 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLT 460 + + ++ E+I+ + G ++LV ++ EGLDIP ++V L Sbjct 476 ------HSDIDTVERVEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLR 529 Query 461 NEISMVQARGRARADQSVYAFVATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQ 519 +E S++Q GRA + A + + + + R + + A ++ Q Sbjct 530 SERSLIQTIGRAARNLHGRAILYGDKVTGSMGRAIAETERRRKKQLAFNETHRIIPRGIQ 589 Query 520 AKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQL 554 +R++ T + + + ++ ++ E+ +L Sbjct 590 KAVREIIDGVYTPGSGKGHRSPDRVEEKAAEYTRL 624 Score = 36.3 bits (82), Expect = 0.99, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 16/48 (33%), Gaps = 5/48 (10%) Query 26 TGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDG 73 TG+GKT ++ V +V L L Q E R Sbjct 41 TGSGKTFT----IANMIQQVQRPTIV-LAPNKTLAAQLYSEMREFFPR 83 >sp|P0C218|DDX20_DANRE Probable ATP-dependent RNA helicase DDX20 OS=Danio rerio OX=7955 GN=ddx20 PE=3 SV=1 Length=761 Score = 86.4 bits (212), Expect = 3e-16, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 81/233 (35%), Gaps = 25/233 (11%) Query 264 KLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCA 323 KL E + + QEQ + N +L ++LA Y RE T ++ Sbjct 179 KLLEDDSSSSFQEQINWIYSSLPANKQMLALSATYP-ESLAQQLSRYMREP-TFVRLNPT 236 Query 324 ERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSL 383 + LL L K + +H + E + L FS + ++F+ A L Sbjct 237 DPGLLGL----KQYYKIVPSHSLPHKVFEEKVQSLLELFSKIPFNQALVFSNLHTRAQHL 292 Query 384 LLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEE 443 L + G S ++Q + E + K + +L++T + Sbjct 293 ADILSSK--------------GLPAVCISGGLSQDQRLEAMWKLKQYQCRVLISTDLTSR 338 Query 444 GLDIPHCNVVVRYGLLTNEISMVQARGRARADQS-----VYAFVATEGSRELK 491 G+D N+V+ + + + + GRA + Y E ++ + Sbjct 339 GIDAEKVNLVINLDVPQDWETYMHRIGRAGRFGTLGVAVTYCCHGEEENKMMA 391 >sp|Q7V9M1|UVRB_PROMA UvrABC system protein B OS=Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) OX=167539 GN=uvrB PE=3 SV=1 Length=677 Score = 86.4 bits (212), Expect = 3e-16, Method: Composition-based stats. Identities = 39/173 (23%), Positives = 72/173 (42%), Gaps = 25/173 (14%) Query 338 LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD 397 L L P ++E L ++ S R +I T T++ A L +L + D Sbjct 417 LDPLVEVRPTKGQVEDLLDEIRE--RSRKKQRVLITTLTKRMAEDLTDYLSEN------D 468 Query 398 IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG 457 +R + L + + ++ E+IQ + G ++LV ++ EGLD+P ++VV Sbjct 469 VRVRYL--------HSEIHSIERIEIIQDLRMGEYDVLVGVNLLREGLDLPEVSLVVILD 520 Query 458 -----LLTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQ 505 L E S++Q GRA A + + + + +A+E + Sbjct 521 ADKEGFLRAERSLIQTIGRAARHIEGKALLYADNF----TDSMKKAIEETERR 569 >sp|Q7VXH4|UVRB_BORPE UvrABC system protein B OS=Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251) OX=257313 GN=uvrB PE=3 SV=1 Length=678 Score = 86.4 bits (212), Expect = 3e-16, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 83/222 (37%), Gaps = 21/222 (9%) Query 289 DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPEN 348 + L + +R + A ++ ++ + + P + Sbjct 378 PSALDNRPLRLEEFEARMRQCVFVSATPAAYEQEHADNVVEQVVRPTGLVDPIVEVRPAH 437 Query 349 PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN 408 +++ L + + ++ R ++ T T++ A L +L + G Sbjct 438 TQVDDLLGEIHK--RAALQERVLVTTLTKRMAEDLTDFLSE--------------HGVRV 481 Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEI 463 + + ++ E+I+ + G ++LV ++ EGLDIP ++V L +E Sbjct 482 RYLHSDIDTVERVEIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSER 541 Query 464 SMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQ 505 S++Q GRA + + A + + + R I+E +Q Sbjct 542 SLIQTIGRAARNLNGRAILYADRITDSMRRAIDETERRRAKQ 583 >sp|Q4UKL6|UVRB_RICFE UvrABC system protein B OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) OX=315456 GN=uvrB PE=3 SV=1 Length=661 Score = 86.4 bits (212), Expect = 3e-16, Method: Composition-based stats. Identities = 38/203 (19%), Positives = 80/203 (39%), Gaps = 22/203 (11%) Query 346 PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 P ++E L +Q + R ++ T T++ A L +LQ+ + Sbjct 426 PATNQVEDLIGEIQAT--IAKGFRVLVTTLTKKMAEDLTAYLQELK-------------- 469 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLT 460 S +++ ++ E+++ + GT+++LV ++ EGLDIP C +V L Sbjct 470 YKTSYLHSNIHTLERIEILRDLRQGTIDILVGINLLREGLDIPECGLVAILDADKEGFLR 529 Query 461 NEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQ 519 +E+S++Q GR AR + A + ++ + + + + ++Q + Sbjct 530 SEVSLIQTIGRAARNSEGRVILYADKMTKSIDKAMSETSRRRQIQQEYNEKHGIIPKTIN 589 Query 520 AKIRDLQQAALTKRAAQAAQREN 542 I L + Q Sbjct 590 RAIHALAELEKVDSKLDKKQAHT 612 >sp|Q07XC8|RAPA_SHEFN RNA polymerase-associated protein RapA OS=Shewanella frigidimarina (strain NCIMB 400) OX=318167 GN=rapA PE=3 SV=1 Length=968 Score = 86.8 bits (213), Expect = 3e-16, Method: Composition-based stats. Identities = 76/452 (17%), Positives = 155/452 (34%), Gaps = 40/452 (9%) Query 27 GAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGP 86 G GKT A + + L T +++V+V L Q E R + R++V + Sbjct 179 GLGKTIEAGLIIHQQLLTGRAERILVIVPD-TLRHQWLVEMLRRFNLRFSVFDEDRCVEA 237 Query 87 RAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHT--HKDTVYNV 144 A + L+IC+ L + E + L+VVDE HH +D Sbjct 238 YADNDNPFYTEQLIICS----LDLLRKKKRLEQAVDADWDLMVVDEAHHLEWSEDAPSRA 293 Query 145 IMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCC 204 ++ ++ +P VL LTA+P G +H +L LD Sbjct 294 -----YKIVEALSEVVPGVLLLTATP------DQLGHQSHFARL-RLLDPDRFYDYDAFL 341 Query 205 PQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVK 264 + E S + + + + + L + + + P + R ++ + + + Sbjct 342 AE--EASYKDVAEAAEALSQDKKLPDSAINSLTELLSEKDIEPSI-RLIQSKDVDAESQQ 398 Query 265 LSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAE 324 + L L ++ L R + A + R +A + ++ + Sbjct 399 AARQELLQELLDRHGTGRVLYRNSRASVKGFPKRLFNAYPHDMPAQYVTAERVNAMMGSA 458 Query 325 RRLLALFDDRKNELAHLATHGPENP---KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAH 381 ++ A + ++ K + L S S + +I ++A Sbjct 459 KQPQAKAAQALSPEKLYQAFENDSASWWKFDPRVDWLIEFLKSHRSKKVLIIASQAETAL 518 Query 382 SLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF--QDGTLNLLVATS 439 SL L+ ++G+Q M+ ++ + F ++G L+ + Sbjct 519 SLEEALRTREGIQATVFH-------------EDMSIIERDKAGAYFAQEEGGAQALICSE 565 Query 440 VAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 + EG + + ++ + L N + Q GR Sbjct 566 IGSEGRNFQFASHLILFDLPLNPDLLEQRIGR 597 >sp|P75433|T1R3_MYCPN Putative type I restriction enzyme MpnIIP endonuclease subunit C-terminal part OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1) OX=272634 GN=MPN_345 PE=5 SV=1 Length=206 Score = 81.4 bits (199), Expect = 3e-16, Method: Composition-based stats. Identities = 35/163 (21%), Positives = 62/163 (38%), Gaps = 18/163 (11%) Query 3 LRSYQWEVIMPALEG-----------KN----IIIWLPTGAGKTRAAAYVAKRHLETVDG 47 +R YQ LE KN IW TG+GKT + + E Sbjct 46 MRPYQICATERILEKIKEDNRNSKNSKNASKGGCIWHSTGSGKTLTSFKAVQLASEIDFV 105 Query 48 AKVVVLVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELL 107 KV+ +V+R L Q EE+ + G + T + D+ + A ++ T L Sbjct 106 DKVLFVVDRKDLDNQTIEEYEKFQAGSVSETENTNDLKEKILDDSTAT--RAIVTTIHKL 163 Query 108 QMALTSPEEEEHVELTVFS-LIVVDECHHTHKDTVYNVIMSQY 149 + + + + +L + +++ DECH + + I + Sbjct 164 KRLIDQRSKLKDEDLKKKNIVLIFDECHRSQFGKMKQEIDEFF 206 >sp|B2UZZ0|UVRB_CLOBA UvrABC system protein B OS=Clostridium botulinum (strain Alaska E43 / Type E3) OX=508767 GN=uvrB PE=3 SV=1 Length=657 Score = 86.4 bits (212), Expect = 3e-16, Method: Composition-based stats. Identities = 42/258 (16%), Positives = 89/258 (34%), Gaps = 22/258 (9%) Query 304 AALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFS 363 + L + + L P +++ L +Q S Sbjct 383 KKINQVMFVSATPAQYELEHSQSIAEQVIRPTGLLDPEIIIKPVKGQIDDLYTEIQETIS 442 Query 364 SSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEV 423 R +I T T++ A L ++ + +G + + + ++ ++ Sbjct 443 R--GYRILITTLTKRMAEDLTKYMIE--------------LGVKATYMHSDIDTIERMKI 486 Query 424 IQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGR-ARADQS 477 I+ + G ++LV ++ EGLDIP +V L +E S++Q GR AR +S Sbjct 487 IRDLRLGEYDVLVGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGRAARNSES 546 Query 478 VYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQA 537 A ++ +K+ + ++ + ++RDL +A + Sbjct 547 KVIMYADNITKSMKKAISETERRRKIQTEYNEEHGIIPQTINKEVRDLIEATKVAEESTE 606 Query 538 AQRENQRQQFPVEHVQLL 555 E + E +L+ Sbjct 607 YGIEATKSLTKKEVKKLI 624 Score = 33.2 bits (74), Expect = 8.5, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 7/65 (11%) Query 8 WEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEF 67 + I E + ++ TG+GKT A + ++ ++L + L Q EF Sbjct 24 LKSIKKGNEFQTLLGV--TGSGKTFTMANIIEKLQRPT-----LILAHNKTLAAQLCSEF 76 Query 68 RRMLD 72 + Sbjct 77 KEFFP 81 >sp|Q94C75|RH25_ARATH DEAD-box ATP-dependent RNA helicase 25 OS=Arabidopsis thaliana OX=3702 GN=RH25 PE=2 SV=2 Length=563 Score = 86.0 bits (211), Expect = 3e-16, Method: Composition-based stats. Identities = 48/326 (15%), Positives = 107/326 (33%), Gaps = 37/326 (11%) Query 152 LKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHS 211 R P ++ L P A + N +L+ ++ ++ + + Sbjct 146 PPASRDNRHPPIIVLVVCPTRELACQAAAEANILLKYHPSIGVQVVIGGTKLPTEQRRLQ 205 Query 212 QQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAAL 271 + PC+ R +D + +++ L + + + E Sbjct 206 KSPCQILVATPGRLKDHIDNTSG--FATRLMGVKVLVLDE--ADHLLDMGFRREIERIIA 261 Query 272 AGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALF 331 A ++++ + + + D VR + +A +D V + ++ Sbjct 262 AVPKQRQTFLF-------SATVSDEVRQICHVALKRDHEFVNCVQEGAGETHQKVSQMYM 314 Query 332 DDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQ 391 +A L H +L +L++ + + + IIF T L+ L + Sbjct 315 ------IASLDRH------FSLLYGLLKKHITDNVGYKVIIFC-TTAMVTRLVADLLGKL 361 Query 392 GLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN 451 L +I + Q + V +F+ +LV + V+ G+D P + Sbjct 362 SLNVREIH-------------SRKPQSYRTRVSDEFRKSKSIILVTSDVSARGVDYPDVS 408 Query 452 VVVRYGLLTNEISMVQARGRARADQS 477 +VV+ GL ++ + GR Sbjct 409 LVVQMGLPSDREQYIHRLGRTGRKGK 434 Score = 53.3 bits (126), Expect = 6e-06, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 49/134 (37%), Gaps = 15/134 (11%) Query 15 LEGKNIIIWLPTGAGKTRAAAYV--AKRHLETVDGAK--------VVVLVNRVHLVTQHG 64 L+GK+I+ TG GKT A + + ++ ++ V+V+ L Q Sbjct 115 LQGKDILAKAKTGTGKT-VAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQAA 173 Query 65 EEFRRMLDGRWTVT---TLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVE 121 E +L ++ + G P +L+ T L+ + + Sbjct 174 AEANILLKYHPSIGVQVVIGGTKLPTEQRRLQKSPCQILVATPGRLKDHIDNTSGFA-TR 232 Query 122 LTVFSLIVVDECHH 135 L ++V+DE H Sbjct 233 LMGVKVLVLDEADH 246 >sp|Q5ZHZ0|DX39B_CHICK Spliceosome RNA helicase DDX39B OS=Gallus gallus OX=9031 GN=DDX39B PE=2 SV=1 Length=428 Score = 85.2 bits (209), Expect = 3e-16, Method: Composition-based stats. Identities = 33/199 (17%), Positives = 69/199 (35%), Gaps = 29/199 (15%) Query 310 YHREHVTKTQILCAERRLLALFDDRKNELAHLATHG--------PENPKLEMLEKILQRQ 361 ++K + + + ++ L HG +N K L +L Sbjct 226 MFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVL 285 Query 362 FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ 421 + +IF ++ Q +L L +Q + M Q ++ Sbjct 286 ----EFNQVVIFVKSVQRCIALAQLLVEQNFPAI--------------AIHRGMPQEERL 327 Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQS---V 478 Q+F+D +LVAT++ G+DI N+ Y + + + + RA + Sbjct 328 SRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLA 387 Query 479 YAFVATEGSRELKRELINE 497 FV+ E ++ ++ + Sbjct 388 ITFVSDENDAKILNDVQDR 406 Score = 48.6 bits (114), Expect = 1e-04, Method: Composition-based stats. Identities = 26/131 (20%), Positives = 47/131 (36%), Gaps = 8/131 (6%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQ--- 62 Q E I A+ G +++ +G GKT + LE V G V+V+ + L Q Sbjct 72 QHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISK 131 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 E F + + G + C +++ T + + + + L Sbjct 132 EYERFSKYMPSVKVAVFFGGLAVKKDEEVLKKNCPHIVVGTP----GRILALARNKSLNL 187 Query 123 TVFSLIVVDEC 133 ++DEC Sbjct 188 KHIKHFILDEC 198 >sp|Q815I3|UVRB_BACCR UvrABC system protein B OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711) OX=226900 GN=uvrB PE=3 SV=1 Length=658 Score = 86.0 bits (211), Expect = 3e-16, Method: Composition-based stats. Identities = 34/199 (17%), Positives = 78/199 (39%), Gaps = 20/199 (10%) Query 365 SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI 424 + + R +I T T++ + L +L+ +G + + + ++ E+I Sbjct 443 AKNERVLITTLTKKMSEDLTDYLKD--------------VGIKVTYLHSEIKTLERIEII 488 Query 425 QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGR-ARADQSV 478 + + G ++LV ++ EGLDIP ++V L +E S++Q GR AR + Sbjct 489 RDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNENGR 548 Query 479 YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA 538 A ++ + + +++A + Q +RD+ +A + Sbjct 549 VIMYADRITKSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAEEIETY 608 Query 539 QRENQRQQFPVEHVQLLCI 557 + ++ E + + Sbjct 609 EATPAKKMTKKEREKTIAK 627 >sp|Q6FY67|MAK5_CANGA ATP-dependent RNA helicase MAK5 OS=Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=MAK5 PE=3 SV=1 Length=733 Score = 86.4 bits (212), Expect = 3e-16, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 53/134 (40%), Gaps = 23/134 (17%) Query 361 QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ 420 F + +IF + +S L +L +G + + MTQ+++ Sbjct 433 YFVTLYPGTTLIFCNSIESVKKLNAYLIN--------------LGINSFQIHSSMTQKNR 478 Query 421 QEVIQKFQD--------GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR- 471 + ++KF+ G +L+A+ VA GLDI VV Y L + + + GR Sbjct 479 LKNLEKFEAMASKNNHLGKPTVLIASDVAARGLDIKGIKHVVHYHLPHSADTYIHRSGRT 538 Query 472 ARADQSVYAFVATE 485 AR D A + Sbjct 539 ARGDNEGVAVMICS 552 Score = 52.1 bits (123), Expect = 1e-05, Method: Composition-based stats. Identities = 29/148 (20%), Positives = 58/148 (39%), Gaps = 11/148 (7%) Query 2 ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAA-AYVAKRHLETVDGAKV--VVLVNRVH 58 E+ Q I ALEGK+I+ TG+GKT A + ++ +++ D + ++ Sbjct 177 EMTPIQKLSIPAALEGKDIMGKASTGSGKTLAYGIPIIEKMIKSKDNLRTNGIIFTPTRE 236 Query 59 LVTQHGEEFRRM-----LDGRWTVTTLSGDMGPRAGFGHLA--RCHDLLICTAELLQMAL 111 L Q + + + + + +L+G + + L +++ T L Sbjct 237 LAQQVTKHLQNVCSMLLKKNPYMILSLTGGLSIQKQERLLKYDGSARIVVATPGRFLE-L 295 Query 112 TSPEEEEHVELTVFSLIVVDECHHTHKD 139 EE ++V+DE +D Sbjct 296 IEKNEELMKRFAKIDVLVLDEADRLLQD 323 >sp|Q3T147|DX39B_BOVIN Spliceosome RNA helicase DDX39B OS=Bos taurus OX=9913 GN=DDX39B PE=2 SV=1 Length=428 Score = 84.8 bits (208), Expect = 3e-16, Method: Composition-based stats. Identities = 33/199 (17%), Positives = 69/199 (35%), Gaps = 29/199 (15%) Query 310 YHREHVTKTQILCAERRLLALFDDRKNELAHLATHG--------PENPKLEMLEKILQRQ 361 ++K + + + ++ L HG +N K L +L Sbjct 226 MFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVL 285 Query 362 FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ 421 + +IF ++ Q +L L +Q + M Q ++ Sbjct 286 ----EFNQVVIFVKSVQRCIALAQLLVEQNFPAI--------------AIHRGMPQEERL 327 Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQS---V 478 Q+F+D +LVAT++ G+DI N+ Y + + + + RA + Sbjct 328 SRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLA 387 Query 479 YAFVATEGSRELKRELINE 497 FV+ E ++ ++ + Sbjct 388 ITFVSDENDAKILNDVQDR 406 Score = 48.6 bits (114), Expect = 1e-04, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 50/132 (38%), Gaps = 10/132 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQ--- 62 Q E I A+ G +++ +G GKT + LE V G V+V+ + L Q Sbjct 72 QHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISK 131 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCH-DLLICTAELLQMALTSPEEEEHVE 121 E F + + V G + + L + +++ T + + + + Sbjct 132 EYERFSKYMP-SVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTP----GRILALARNKSLN 186 Query 122 LTVFSLIVVDEC 133 L ++DEC Sbjct 187 LKHIKHFILDEC 198 >sp|Q5RE47|DX39B_PONAB Spliceosome RNA helicase DDX39B OS=Pongo abelii OX=9601 GN=DDX39B PE=2 SV=1 Length=428 Score = 84.8 bits (208), Expect = 4e-16, Method: Composition-based stats. Identities = 33/199 (17%), Positives = 69/199 (35%), Gaps = 29/199 (15%) Query 310 YHREHVTKTQILCAERRLLALFDDRKNELAHLATHG--------PENPKLEMLEKILQRQ 361 ++K + + + ++ L HG +N K L +L Sbjct 226 MFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVL 285 Query 362 FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ 421 + +IF ++ Q +L L +Q + M Q ++ Sbjct 286 ----EFNQVVIFVKSVQRCIALAQLLVEQNFPAI--------------AIHRGMPQEERL 327 Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQS---V 478 Q+F+D +LVAT++ G+DI N+ Y + + + + RA + Sbjct 328 SRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLA 387 Query 479 YAFVATEGSRELKRELINE 497 FV+ E ++ ++ + Sbjct 388 ITFVSDENDAKILNDVQDR 406 Score = 48.3 bits (113), Expect = 2e-04, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 50/132 (38%), Gaps = 10/132 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQ--- 62 Q E I A+ G +++ +G GKT + LE V G V+V+ + L Q Sbjct 72 QHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISK 131 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCH-DLLICTAELLQMALTSPEEEEHVE 121 E F + + V G + + L + +++ T + + + + Sbjct 132 EYERFSKYMPN-VKVAVFFGGLSIKKDEEVLKKNCPHIVVGTP----GRILALARNKSLN 186 Query 122 LTVFSLIVVDEC 133 L ++DEC Sbjct 187 LKHIKHFILDEC 198 >sp|Q29024|DX39B_PIG Spliceosome RNA helicase DDX39B OS=Sus scrofa OX=9823 GN=DDX39B PE=3 SV=2 Length=428 Score = 84.8 bits (208), Expect = 4e-16, Method: Composition-based stats. Identities = 33/199 (17%), Positives = 69/199 (35%), Gaps = 29/199 (15%) Query 310 YHREHVTKTQILCAERRLLALFDDRKNELAHLATHG--------PENPKLEMLEKILQRQ 361 ++K + + + ++ L HG +N K L +L Sbjct 226 MFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVL 285 Query 362 FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ 421 + +IF ++ Q +L L +Q + M Q ++ Sbjct 286 ----EFNQVVIFVKSVQRCIALAQLLVEQNFPAI--------------AIHRGMPQEERL 327 Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQS---V 478 Q+F+D +LVAT++ G+DI N+ Y + + + + RA + Sbjct 328 SRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLA 387 Query 479 YAFVATEGSRELKRELINE 497 FV+ E ++ ++ + Sbjct 388 ITFVSDENDAKILNDVQDR 406 Score = 48.3 bits (113), Expect = 2e-04, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 50/132 (38%), Gaps = 10/132 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQ--- 62 Q E I A+ G +++ +G GKT + LE V G V+V+ + L Q Sbjct 72 QHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISK 131 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCH-DLLICTAELLQMALTSPEEEEHVE 121 E F + + V G + + L + +++ T + + + + Sbjct 132 EYERFSKYMPN-VKVAVFFGGLSIKKDEEVLKKNCPHIVVGTP----GRILALARNKSLN 186 Query 122 LTVFSLIVVDEC 133 L ++DEC Sbjct 187 LKHIKHFILDEC 198 >sp|P60024|DX39B_PANTR Spliceosome RNA helicase DDX39B OS=Pan troglodytes OX=9598 GN=DDX39B PE=3 SV=1 Length=428 Score = 84.8 bits (208), Expect = 4e-16, Method: Composition-based stats. Identities = 33/199 (17%), Positives = 69/199 (35%), Gaps = 29/199 (15%) Query 310 YHREHVTKTQILCAERRLLALFDDRKNELAHLATHG--------PENPKLEMLEKILQRQ 361 ++K + + + ++ L HG +N K L +L Sbjct 226 MFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVL 285 Query 362 FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ 421 + +IF ++ Q +L L +Q + M Q ++ Sbjct 286 ----EFNQVVIFVKSVQRCIALAQLLVEQNFPAI--------------AIHRGMPQEERL 327 Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQS---V 478 Q+F+D +LVAT++ G+DI N+ Y + + + + RA + Sbjct 328 SRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLA 387 Query 479 YAFVATEGSRELKRELINE 497 FV+ E ++ ++ + Sbjct 388 ITFVSDENDAKILNDVQDR 406 Score = 48.3 bits (113), Expect = 2e-04, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 50/132 (38%), Gaps = 10/132 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQ--- 62 Q E I A+ G +++ +G GKT + LE V G V+V+ + L Q Sbjct 72 QHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISK 131 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCH-DLLICTAELLQMALTSPEEEEHVE 121 E F + + V G + + L + +++ T + + + + Sbjct 132 EYERFSKYMPN-VKVAVFFGGLSIKKDEEVLKKNCPHIVVGTP----GRILALARNKSLN 186 Query 122 LTVFSLIVVDEC 133 L ++DEC Sbjct 187 LKHIKHFILDEC 198 >sp|Q5TM17|DX39B_MACMU Spliceosome RNA helicase DDX39B OS=Macaca mulatta OX=9544 GN=DDX39B PE=3 SV=1 Length=428 Score = 84.8 bits (208), Expect = 4e-16, Method: Composition-based stats. Identities = 33/199 (17%), Positives = 69/199 (35%), Gaps = 29/199 (15%) Query 310 YHREHVTKTQILCAERRLLALFDDRKNELAHLATHG--------PENPKLEMLEKILQRQ 361 ++K + + + ++ L HG +N K L +L Sbjct 226 MFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVL 285 Query 362 FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ 421 + +IF ++ Q +L L +Q + M Q ++ Sbjct 286 ----EFNQVVIFVKSVQRCIALAQLLVEQNFPAI--------------AIHRGMPQEERL 327 Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQS---V 478 Q+F+D +LVAT++ G+DI N+ Y + + + + RA + Sbjct 328 SRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLA 387 Query 479 YAFVATEGSRELKRELINE 497 FV+ E ++ ++ + Sbjct 388 ITFVSDENDAKILNDVQDR 406 Score = 48.3 bits (113), Expect = 2e-04, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 50/132 (38%), Gaps = 10/132 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQ--- 62 Q E I A+ G +++ +G GKT + LE V G V+V+ + L Q Sbjct 72 QHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISK 131 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCH-DLLICTAELLQMALTSPEEEEHVE 121 E F + + V G + + L + +++ T + + + + Sbjct 132 EYERFSKYMPN-VKVAVFFGGLSIKKDEEVLKKNCPHIVVGTP----GRILALARNKSLN 186 Query 122 LTVFSLIVVDEC 133 L ++DEC Sbjct 187 LKHIKHFILDEC 198 >sp|Q13838|DX39B_HUMAN Spliceosome RNA helicase DDX39B OS=Homo sapiens OX=9606 GN=DDX39B PE=1 SV=1 Length=428 Score = 84.8 bits (208), Expect = 4e-16, Method: Composition-based stats. Identities = 33/199 (17%), Positives = 69/199 (35%), Gaps = 29/199 (15%) Query 310 YHREHVTKTQILCAERRLLALFDDRKNELAHLATHG--------PENPKLEMLEKILQRQ 361 ++K + + + ++ L HG +N K L +L Sbjct 226 MFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVL 285 Query 362 FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ 421 + +IF ++ Q +L L +Q + M Q ++ Sbjct 286 ----EFNQVVIFVKSVQRCIALAQLLVEQNFPAI--------------AIHRGMPQEERL 327 Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQS---V 478 Q+F+D +LVAT++ G+DI N+ Y + + + + RA + Sbjct 328 SRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLA 387 Query 479 YAFVATEGSRELKRELINE 497 FV+ E ++ ++ + Sbjct 388 ITFVSDENDAKILNDVQDR 406 Score = 48.3 bits (113), Expect = 2e-04, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 50/132 (38%), Gaps = 10/132 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQ--- 62 Q E I A+ G +++ +G GKT + LE V G V+V+ + L Q Sbjct 72 QHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISK 131 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCH-DLLICTAELLQMALTSPEEEEHVE 121 E F + + V G + + L + +++ T + + + + Sbjct 132 EYERFSKYMPN-VKVAVFFGGLSIKKDEEVLKKNCPHIVVGTP----GRILALARNKSLN 186 Query 122 LTVFSLIVVDEC 133 L ++DEC Sbjct 187 LKHIKHFILDEC 198 >sp|Q4DCH3|JBP2_TRYCC Bifunctional helicase and thymine dioxygenase JBP2 OS=Trypanosoma cruzi (strain CL Brener) OX=353153 GN=JBP2 PE=3 SV=1 Length=1086 Score = 86.8 bits (213), Expect = 4e-16, Method: Composition-based stats. Identities = 79/506 (16%), Positives = 159/506 (31%), Gaps = 54/506 (11%) Query 10 VIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV-----TQHG 64 V+ +G +I L G GKT + + H+ + V++L ++ L Q Sbjct 532 VVDRLSKGNGCVIALTMGLGKTLLSLALCYSHMYDQNPRDVLILAPKIVLTHWTGEKQKW 591 Query 65 EEFR---RMLDGRWTVTTLSGDMG----PRAGFGHLARCHDLLICTAELLQMALTSPEEE 117 E++ ++S ++ + G L R + + E ++ L Sbjct 592 EKYGLVFSHFVVSDGTDSVSFEIALKRYKQQLNGELPRTSHVFVINPEYIRTVLKKLT-- 649 Query 118 EHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASK 177 SLI+VDE H L+ L+ + +V+ L+ +P A + Sbjct 650 GFRP----SLIIVDEGHRVSSKGSK-------LKDWLEGLRCTARVI-LSGTPVQNNAEE 697 Query 178 LDGAINHV-LQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKL 236 L I + + + L + R Q+ + + Sbjct 698 LYRLIGWINSDVHSVLPPRVFTDLAGTINRYINGDDSALAAAVSAQRYIQEWMCSYVFSV 757 Query 237 MDQIHDHLEMPELSRKFGT--QMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALL-- 292 M L + F + + + + L ++ HL + L Sbjct 758 MKTDLPPLNDYIIICGFSSIQRKMLEDHFGMEGIDGLTSIKASEHRPYHLSTHPLCFLGF 817 Query 293 ---IHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELA--HLATHGPE 347 ++ ++ L + +Q+ + L D+ + + L Sbjct 818 ISGVYKSLNGNHKLTPEAEEELESQEYASQLYSLTEDDIGLIDECLSLVNSGFLTEFVGL 877 Query 348 NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG 407 + K+ +L IL + IIF++ S + L + + IR + Sbjct 878 SGKMTVLISILHSI--REKKEKAIIFSQYVGSQDFISRTLTSFDIVSST-IRGRDCH--- 931 Query 408 NSSQSTHMTQRDQQEVIQKFQDGT--LNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465 ++ I+KF++ LL++T + GLD N V+ + N Sbjct 932 ----------ERRRRTIEKFREDEKITCLLLSTQIGAYGLDFTAANHVILWDSWWNPQVE 981 Query 466 VQARGRARADQSVYAFVATEGSRELK 491 QA RA A + + E + Sbjct 982 SQAIARAYRRNQTRAVIVYRLASEFE 1007 >sp|Q5WR10|DX39B_CANLF Spliceosome RNA helicase DDX39B OS=Canis lupus familiaris OX=9615 GN=DDX39B PE=3 SV=1 Length=428 Score = 84.8 bits (208), Expect = 4e-16, Method: Composition-based stats. Identities = 33/199 (17%), Positives = 69/199 (35%), Gaps = 29/199 (15%) Query 310 YHREHVTKTQILCAERRLLALFDDRKNELAHLATHG--------PENPKLEMLEKILQRQ 361 ++K + + + ++ L HG +N K L +L Sbjct 226 MFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVL 285 Query 362 FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ 421 + +IF ++ Q +L L +Q + M Q ++ Sbjct 286 ----EFNQVVIFVKSVQRCIALAQLLVEQNFPAI--------------AIHRGMPQEERL 327 Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQS---V 478 Q+F+D +LVAT++ G+DI N+ Y + + + + RA + Sbjct 328 SRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLA 387 Query 479 YAFVATEGSRELKRELINE 497 FV+ E ++ ++ + Sbjct 388 ITFVSDENDAKILNDVQDR 406 Score = 48.3 bits (113), Expect = 2e-04, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 50/132 (38%), Gaps = 10/132 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQ--- 62 Q E I A+ G +++ +G GKT + LE V G V+V+ + L Q Sbjct 72 QHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISK 131 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCH-DLLICTAELLQMALTSPEEEEHVE 121 E F + + V G + + L + +++ T + + + + Sbjct 132 EYERFSKYMPN-VKVAVFFGGLSIKKDEEVLKKNCPHIVVGTP----GRILALARNKSLN 186 Query 122 LTVFSLIVVDEC 133 L ++DEC Sbjct 187 LKHIKHFILDEC 198 >sp|P38112|MAK5_YEAST ATP-dependent RNA helicase MAK5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=MAK5 PE=1 SV=1 Length=773 Score = 86.4 bits (212), Expect = 4e-16, Method: Composition-based stats. Identities = 49/292 (17%), Positives = 94/292 (32%), Gaps = 52/292 (18%) Query 229 FGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN 288 F +LL+K I ++ L ++ + E L E+R + + Sbjct 310 FLELLEKDNTLIKRFSKVNTLILDEADRLLQDGHFDEFEKIIKHLLVERRKNRENSEGSS 369 Query 289 DAL--LIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATH-- 344 LI ++D L V + E L A+ +++ + Sbjct 370 KIWQTLIFSATFSIDLFDKLSS---SRQVKDRRFKNNEDELNAVIQHLMSKIHFNSKPVI 426 Query 345 ---GPENPKLEMLEKILQR-----------QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQ 390 PE+ +++ L F + +IF S L ++L Sbjct 427 IDTNPESKVSSQIKESLIECPPLERDLYCYYFLTMFPGTTLIFCNAIDSVKKLTVYLNN- 485 Query 391 QGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN----------------L 434 +G + MTQ+++ + +++F+ + + Sbjct 486 -------------LGIPAFQIHSSMTQKNRLKSLERFKQQSAKQKTINHSNPDSVQLSTV 532 Query 435 LVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATE 485 L+A+ VA GLDIP V+ Y L + + GR ARA + + Sbjct 533 LIASDVAARGLDIPGVQHVIHYHLPRSTDIYIHRSGRTARAGSEGVSAMICS 584 Score = 50.6 bits (119), Expect = 5e-05, Method: Composition-based stats. Identities = 47/347 (14%), Positives = 109/347 (31%), Gaps = 44/347 (13%) Query 26 TGAGKTR-----AAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDG-----RW 75 TG+GKT + + ++ L Q + +++ + ++ Sbjct 217 TGSGKTLAYGIPIVEKLISNFSQKNKKPISLIFTPTRELAHQVTDHLKKICEPVLAKSQY 276 Query 76 TVTTLSG--DMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC 133 ++ +L+G + + ++I T L + + + +++DE Sbjct 277 SILSLTGGLSIQKQQRLLKYDNSGQIVIATPGRFLE-LLEKDNTLIKRFSKVNTLILDEA 335 Query 134 HHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLD 193 +D ++ L ++R + S+ I L A Sbjct 336 DRLLQDGHFDEFEKIIKHLLVERRK-------------NRENSEGSSKIWQTLIFSATFS 382 Query 194 TWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKF 253 L + + + + ++D +++ LM +IH + + + Sbjct 383 I-----------DLFDKLSSSRQVKDRRFKNNEDELNAVIQHLMSKIHFNSKPVIIDTNP 431 Query 254 GTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHRE 313 +++ Q L E L+ L + LI A+D++ L + + Sbjct 432 ESKVSSQIKESLIEC---PPLERDLYCYYFLTMFPGTTLIF--CNAIDSVKKLTVYLNNL 486 Query 314 HVTKTQILC--AERRLLALFDDRKNELAHLATHGPENPKLEMLEKIL 358 + QI ++ L + K + A T NP L +L Sbjct 487 GIPAFQIHSSMTQKNRLKSLERFKQQSAKQKTINHSNPDSVQLSTVL 533 >sp|C4K6N8|UVRB_HAMD5 UvrABC system protein B OS=Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) OX=572265 GN=uvrB PE=3 SV=1 Length=671 Score = 86.0 bits (211), Expect = 4e-16, Method: Composition-based stats. Identities = 36/182 (20%), Positives = 77/182 (42%), Gaps = 20/182 (11%) Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 R ++ T T++ A L +L +Q G + + ++ E+I+ Sbjct 446 DERVLVTTLTKRMAEDLTEYLAEQ--------------GERVRYLHSDIDTVERVEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + + A Sbjct 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAI 551 Query 482 VATEGSRELKRELINEALETLMEQ-AVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR 540 + + ++ I+E +Q + + + + + KIRD+ + + +A +R Sbjct 552 LYGDKITVSMKKAIDETERRRKKQESYNKEKGIVPKKLEKKIRDILELGQSYTKGKARKR 611 Query 541 EN 542 Sbjct 612 TT 613 >sp|Q63413|DX39B_RAT Spliceosome RNA helicase Ddx39b OS=Rattus norvegicus OX=10116 GN=Ddx39b PE=2 SV=3 Length=428 Score = 84.8 bits (208), Expect = 4e-16, Method: Composition-based stats. Identities = 33/199 (17%), Positives = 69/199 (35%), Gaps = 29/199 (15%) Query 310 YHREHVTKTQILCAERRLLALFDDRKNELAHLATHG--------PENPKLEMLEKILQRQ 361 ++K + + + ++ L HG +N K L +L Sbjct 226 MFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVL 285 Query 362 FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ 421 + +IF ++ Q +L L +Q + M Q ++ Sbjct 286 ----EFNQVVIFVKSVQRCIALAQLLVEQNFPAI--------------AIHRGMPQEERL 327 Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQS---V 478 Q+F+D +LVAT++ G+DI N+ Y + + + + RA + Sbjct 328 SRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLA 387 Query 479 YAFVATEGSRELKRELINE 497 FV+ E ++ ++ + Sbjct 388 ITFVSDENDAKILNDVQDR 406 Score = 48.3 bits (113), Expect = 2e-04, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 50/132 (38%), Gaps = 10/132 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQ--- 62 Q E I A+ G +++ +G GKT + LE V G V+V+ + L Q Sbjct 72 QHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISK 131 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCH-DLLICTAELLQMALTSPEEEEHVE 121 E F + + V G + + L + +++ T + + + + Sbjct 132 EYERFSKYMPN-VKVAVFFGGLSIKKDEEVLKKNCPHIVVGTP----GRILALARNKSLN 186 Query 122 LTVFSLIVVDEC 133 L ++DEC Sbjct 187 LKHIKHFILDEC 198 >sp|Q9Z1N5|DX39B_MOUSE Spliceosome RNA helicase Ddx39b OS=Mus musculus OX=10090 GN=Ddx39b PE=1 SV=1 Length=428 Score = 84.8 bits (208), Expect = 4e-16, Method: Composition-based stats. Identities = 33/199 (17%), Positives = 69/199 (35%), Gaps = 29/199 (15%) Query 310 YHREHVTKTQILCAERRLLALFDDRKNELAHLATHG--------PENPKLEMLEKILQRQ 361 ++K + + + ++ L HG +N K L +L Sbjct 226 MFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVL 285 Query 362 FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQ 421 + +IF ++ Q +L L +Q + M Q ++ Sbjct 286 ----EFNQVVIFVKSVQRCIALAQLLVEQNFPAI--------------AIHRGMPQEERL 327 Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQS---V 478 Q+F+D +LVAT++ G+DI N+ Y + + + + RA + Sbjct 328 SRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLA 387 Query 479 YAFVATEGSRELKRELINE 497 FV+ E ++ ++ + Sbjct 388 ITFVSDENDAKILNDVQDR 406 Score = 48.3 bits (113), Expect = 2e-04, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 50/132 (38%), Gaps = 10/132 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQ--- 62 Q E I A+ G +++ +G GKT + LE V G V+V+ + L Q Sbjct 72 QHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISK 131 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCH-DLLICTAELLQMALTSPEEEEHVE 121 E F + + V G + + L + +++ T + + + + Sbjct 132 EYERFSKYMPN-VKVAVFFGGLSIKKDEEVLKKNCPHIVVGTP----GRILALARNKSLN 186 Query 122 LTVFSLIVVDEC 133 L ++DEC Sbjct 187 LKHIKHFILDEC 198 >sp|Q9V0A9|HELS_PYRAB ATP-dependent DNA helicase Hel308 OS=Pyrococcus abyssi (strain GE5 / Orsay) OX=272844 GN=hel308 PE=3 SV=1 Length=715 Score = 86.0 bits (211), Expect = 4e-16, Method: Composition-based stats. Identities = 40/170 (24%), Positives = 67/170 (39%), Gaps = 14/170 (8%) Query 7 QWEVIMPA-LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q E + LEG+N+++ +PT +GKT A L +G K V +V L + Sbjct 28 QAEALTSGVLEGENLLVAIPTASGKTLIAEIAIANKL-LEEGGKAVYIVPLKALAEEKFR 86 Query 66 EFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF 125 EF+ V +GD + + +D++I TAE L + Sbjct 87 EFKDWERLGLKVAMATGDYDSKDEW---LGKYDIIIATAEKFDSLL----RHGSSWIRDV 139 Query 126 SLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGA 175 ++V+DE H LE + + Q++GL+A+ G Sbjct 140 KMLVIDEIHLIGSRDRGAT-----LEFIITQMLGRAQIIGLSATIGNPEE 184 Score = 40.6 bits (93), Expect = 0.053, Method: Composition-based stats. Identities = 21/134 (16%), Positives = 46/134 (34%), Gaps = 27/134 (20%) Query 370 GIIFTRTRQSAHSLL-------------------LWLQQQQGLQTVDIRAQLLIGAGNSS 410 ++F R+ A L + + + + +G + Sbjct 240 ALVFVNMRRKAEKTALELAKKVKNYLDRKELRELRELAESLEENPTNEKLAKALLSGVAF 299 Query 411 QSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVR-------YGLLTNEI 463 + + ++ V F+ G + ++VAT G++ P V++R +G+ + Sbjct 300 HHAGLGRDERVLVEDNFRKGLIKVVVATPTLSAGINTPAFRVIIRDTWRYSEFGMERIPV 359 Query 464 SMV-QARGRARADQ 476 V Q GRA + Sbjct 360 LEVQQMMGRAGRPR 373 >sp|Q6H601|RH22_ORYSJ DEAD-box ATP-dependent RNA helicase 22 OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0383400 PE=2 SV=2 Length=577 Score = 85.6 bits (210), Expect = 4e-16, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 58/132 (44%), Gaps = 17/132 (13%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 R ++FT T +A+S+ LQ+ +G + ++ + +Q F+ Sbjct 428 RTMVFTNTVDAANSVSDILQR--------------VGVPCILYHRDSSLEERAKNLQSFR 473 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEG 486 + +LV T A GLD+P+ + V++ + + GR ARA QS + TE Sbjct 474 ENG-GVLVCTDAAARGLDVPNVSHVIQAEFAACAVDFLHRVGRTARAGQSGIVTSLYTEA 532 Query 487 SRELKRELINEA 498 +R+L R + Sbjct 533 NRDLVRAVRQAE 544 Score = 51.0 bits (120), Expect = 3e-05, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 47/147 (32%), Gaps = 25/147 (17%) Query 10 VIMPA-----LEGKNIIIWLPTGAGKTR------AAAYVAKRHLETVDGAK--------- 49 ++ A L ++I+ TG+GKT +K ++ Sbjct 107 LVQAACIPHVLTTNDVIVAAETGSGKTHGYLVPLIEKLCSKSISAEDGNSQDVTSGSPNI 166 Query 50 VVVLVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQM 109 +VL V L Q ++D + + G+ + D+L+ T L Sbjct 167 ALVLCPNVMLCEQVVRMANSLVDESGEPLKSAAAVCGPKGWPTV--RPDILVATPAALLN 224 Query 110 ALTSPEEEEHVE---LTVFSLIVVDEC 133 L + E+ L IV DE Sbjct 225 YLFDYDPEKRRRERFLRNVKFIVFDEA 251 >sp|Q6CRF4|DBP4_KLULA ATP-dependent RNA helicase DBP4 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=DBP4 PE=3 SV=1 Length=770 Score = 86.0 bits (211), Expect = 4e-16, Method: Composition-based stats. Identities = 30/207 (14%), Positives = 64/207 (31%), Gaps = 19/207 (9%) Query 332 DDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQ 391 L P KL++L ++ + I+F + + H + ++ Q Sbjct 258 SATPESLQQSYIEVPLPDKLDILFSFIKSHLK----SKLIVFLSSSKQVHFVYETFRKLQ 313 Query 392 GLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN 451 G Q + E + KF L +T V G+D P + Sbjct 314 P------------GISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVD 361 Query 452 VVVRYGLLTNEISMVQARGRA---RADQSVYAFVATEGSRELKRELINEALETLMEQAVA 508 V++ + + + GRA + + E + L + +E Sbjct 362 WVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEEEEGFLKRLKTKNIEPSRLNIKQ 421 Query 509 AVQKMDQAEYQAKIRDLQQAALTKRAA 535 + +K + + Q+ + + + A Sbjct 422 SKKKSIKPQLQSLLFKDPELKYLGQKA 448 Score = 54.4 bits (129), Expect = 3e-06, Method: Composition-based stats. Identities = 24/136 (18%), Positives = 45/136 (33%), Gaps = 10/136 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAY------VAKRHLETVDGAKVVVLVNRVHLV 60 Q E I +L+G +++ TG+GKT A + + +DG +++ L Sbjct 68 QRESIPLSLKGHDVLGAAKTGSGKTL-AFLIPVIEKLYREKWTDMDGLGALIISPTRELA 126 Query 61 TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 Q E ++ L ++LI T + + Sbjct 127 MQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERISRINILIGTPGRILQHMDQAVG---F 183 Query 121 ELTVFSLIVVDECHHT 136 + L+V+DE Sbjct 184 NTSNLQLLVLDEADRC 199 >sp|Q1RHI9|UVRB_RICBR UvrABC system protein B OS=Rickettsia bellii (strain RML369-C) OX=336407 GN=uvrB PE=3 SV=1 Length=661 Score = 86.0 bits (211), Expect = 4e-16, Method: Composition-based stats. Identities = 34/179 (19%), Positives = 71/179 (40%), Gaps = 20/179 (11%) Query 370 GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD 429 ++ T T++ A L +LQ+ + S +++ ++ E+++ + Sbjct 448 VLVTTLTKKMAEDLTNYLQELK--------------YKTSYLHSNIHTLERIEILRDLRQ 493 Query 430 GTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGR-ARADQSVYAFVA 483 GT+++LV ++ EGLDIP C +V L +E+S++Q GR AR + A Sbjct 494 GTIDILVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGRAARNSEGRVILYA 553 Query 484 TEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQREN 542 + ++ + + + ++Q + I L + Q N Sbjct 554 DKMTKSIDKAISETMRRRTIQQEHNEKYGIIPKTINRTIHALAELEKVDSKLDKKQTHN 612 >sp|P9WFC7|UVRB_MYCTU UvrABC system protein B OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=uvrB PE=1 SV=2 Length=719 Score = 86.0 bits (211), Expect = 5e-16, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 70/176 (40%), Gaps = 20/176 (11%) Query 363 SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE 422 + R ++ T T++ A L +L + +G + + + E Sbjct 464 RADADQRVLVTTLTKKMAEDLTDYLLE--------------MGIRVRYLHSEVDTLRRVE 509 Query 423 VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQS 477 ++++ + G ++LV ++ EGLD+P ++V L + S++Q GRA + S Sbjct 510 LLRQLRLGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSRSLIQTIGRAARNVS 569 Query 478 VYAFVATEGSRELKRELINEALETLMEQ-AVAAVQKMDQAEYQAKIRDLQQAALTK 532 + + + RE I+E +Q A +D + KI D+ + Sbjct 570 GEVHMYADKITDSMREAIDETERRRAKQIAYNEANGIDPQPLRKKIADILDQVYRE 625 >sp|P9WFC6|UVRB_MYCTO UvrABC system protein B OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=uvrB PE=3 SV=2 Length=719 Score = 86.0 bits (211), Expect = 5e-16, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 70/176 (40%), Gaps = 20/176 (11%) Query 363 SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE 422 + R ++ T T++ A L +L + +G + + + E Sbjct 464 RADADQRVLVTTLTKKMAEDLTDYLLE--------------MGIRVRYLHSEVDTLRRVE 509 Query 423 VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQS 477 ++++ + G ++LV ++ EGLD+P ++V L + S++Q GRA + S Sbjct 510 LLRQLRLGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSRSLIQTIGRAARNVS 569 Query 478 VYAFVATEGSRELKRELINEALETLMEQ-AVAAVQKMDQAEYQAKIRDLQQAALTK 532 + + + RE I+E +Q A +D + KI D+ + Sbjct 570 GEVHMYADKITDSMREAIDETERRRAKQIAYNEANGIDPQPLRKKIADILDQVYRE 625 >sp|P67423|UVRB_MYCBO UvrABC system protein B OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) OX=233413 GN=uvrB PE=3 SV=2 Length=719 Score = 86.0 bits (211), Expect = 5e-16, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 70/176 (40%), Gaps = 20/176 (11%) Query 363 SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE 422 + R ++ T T++ A L +L + +G + + + E Sbjct 464 RADADQRVLVTTLTKKMAEDLTDYLLE--------------MGIRVRYLHSEVDTLRRVE 509 Query 423 VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQS 477 ++++ + G ++LV ++ EGLD+P ++V L + S++Q GRA + S Sbjct 510 LLRQLRLGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSRSLIQTIGRAARNVS 569 Query 478 VYAFVATEGSRELKRELINEALETLMEQ-AVAAVQKMDQAEYQAKIRDLQQAALTK 532 + + + RE I+E +Q A +D + KI D+ + Sbjct 570 GEVHMYADKITDSMREAIDETERRRAKQIAYNEANGIDPQPLRKKIADILDQVYRE 625 >sp|A0PYA5|UVRB_CLONN UvrABC system protein B OS=Clostridium novyi (strain NT) OX=386415 GN=uvrB PE=3 SV=1 Length=657 Score = 85.6 bits (210), Expect = 5e-16, Method: Composition-based stats. Identities = 59/397 (15%), Positives = 125/397 (31%), Gaps = 27/397 (7%) Query 170 PGTGGASKLDGAINHVLQLCANL-DTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 P + A+ D + ++ L D +++ ++ + Q Q+ + Sbjct 244 PASHFATSKDKLEIAIKKIEEELEDRVKVLTAEDKLLEAQRVRQRTNFDIEMMREVGYCS 303 Query 229 FGDLLKKLMDQIHDHLEMPELSRKFGTQM---YEQQVVKLSEAAALAGLQEQRVYALHLR 285 + +++D L F ++ V L + A+ G R L Sbjct 304 GIENYSRVLDGRAPGTPPKTLMDYFPDDFLLFIDESHVTLPQVKAMYGGDRSRKNNLVEY 363 Query 286 RYNDALLIHDTVRAVDAL-AALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATH 344 + + D L L + L Sbjct 364 GFRLPCAYDNRPLKFDEFEGKLNQTVFVSATPAQYELEHSTNVAEQIIRPTGLLDPEIIV 423 Query 345 GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI 404 P +++ L ++ R ++ T T++ + L +L+ + Sbjct 424 KPIKGQIDDLYASIKETI--DKGFRVLVTTLTKKMSEDLTDYLKS--------------M 467 Query 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LL 459 G + + + E+I+ + G ++LV ++ EGLDIP +V L Sbjct 468 GIKTEYLHSSIDTIKRMEIIRDLRKGKFDVLVGINLLREGLDIPEVALVAILDADKEGFL 527 Query 460 TNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEY 518 +E S+VQ GR AR +S A ++ + + + ++ + Sbjct 528 RSETSLVQTIGRAARNSESKVIMYADNITKAMDKAISETNRRRKIQMEYNDKHGIVPRTV 587 Query 519 QAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQLL 555 IRD+ Q + + A+ N + E +L+ Sbjct 588 LKDIRDVIQTKVAEDEAEYKVNNNTDKLSKKEIEKLI 624 Score = 33.6 bits (75), Expect = 7.0, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 7/64 (11%) Query 9 EVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFR 68 E I+ + + ++ TG+GKT +E V +VL + L Q EFR Sbjct 25 EGILKGEKFQTLLGV--TGSGKTFT----MANIIEKV-QKPTLVLAHNKTLAAQLTSEFR 77 Query 69 RMLD 72 Sbjct 78 EFFP 81 >sp|P57844|UVRB_PASMU UvrABC system protein B OS=Pasteurella multocida (strain Pm70) OX=272843 GN=uvrB PE=3 SV=1 Length=678 Score = 85.6 bits (210), Expect = 5e-16, Method: Composition-based stats. Identities = 41/221 (19%), Positives = 84/221 (38%), Gaps = 24/221 (11%) Query 363 SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE 422 + + R ++ T T++ A L +L + IR + L + + ++ E Sbjct 447 RADQNERVLVTTLTKKMAEDLTDYLDEH------GIRVRYL--------HSDIDTVERVE 492 Query 423 VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQS 477 +I+ + G ++LV ++ EGLDIP ++V L +E S++Q GRA + Sbjct 493 IIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLK 552 Query 478 VYAFVATEGSRELKRELINEALETLMEQ-AVAAVQKMDQAEYQAKIRDLQQAALTKRAAQ 536 A + + ++ I E +Q + + K+ +L Sbjct 553 GKAILYADRITNSMQKAITETNRRREKQMKYNEARGIVPQALNKKVGELLDIGQGANQKA 612 Query 537 AAQRENQRQQFPVEHVQLLCINCMVAVGHGSDLRKVEGTHH 577 A R ++ P L + A + ++K+E + Sbjct 613 KANRNAKKVAEP----TALYVVPQTAKEYQQQIKKLEQQMY 649 Score = 34.4 bits (77), Expect = 4.5, Method: Composition-based stats. Identities = 14/65 (22%), Positives = 22/65 (34%), Gaps = 7/65 (11%) Query 8 WEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEF 67 E + L + ++ TG+GKT A V + +VL L Q E Sbjct 30 IEGLENGLAHQTLLGV--TGSGKTFTIANVIAKL-----NRPAMVLAPNKTLAAQLYAEM 82 Query 68 RRMLD 72 + Sbjct 83 KAFFP 87 >sp|Q6NHI3|UVRB_CORDI UvrABC system protein B OS=Corynebacterium diphtheriae (strain ATCC 700971 / NCTC 13129 / Biotype gravis) OX=257309 GN=uvrB PE=3 SV=1 Length=681 Score = 85.6 bits (210), Expect = 5e-16, Method: Composition-based stats. Identities = 36/182 (20%), Positives = 75/182 (41%), Gaps = 20/182 (11%) Query 363 SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE 422 ++ R ++ T T++ A L +L + IR + L + + + E Sbjct 447 RTTKDERVLVTTLTKKMAEDLTDYLLEN------GIRVRYL--------HSDIDTLQRVE 492 Query 423 VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQS 477 ++++ + G ++LV ++ EGLD+P ++V L + S++Q GRA + S Sbjct 493 LLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTKSLIQTIGRAARNVS 552 Query 478 VYAFVATEGSRELKRELINEALETLMEQ-AVAAVQKMDQAEYQAKIRDLQQAALTKRAAQ 536 + + + + I+E +Q A +D + KI D+ + +A Sbjct 553 GTVIMYADKITDSMQYAIDETERRREKQIAYNKEHGIDPQPLRKKIADILEQVQESKAES 612 Query 537 AA 538 A Sbjct 613 TA 614 Score = 34.4 bits (77), Expect = 4.7, Method: Composition-based stats. Identities = 12/47 (26%), Positives = 21/47 (45%), Gaps = 5/47 (11%) Query 26 TGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLD 72 TG GK+ AA++ ++ +V+ L Q E R++L Sbjct 47 TGTGKSATAAWLIEQQQRPT-----LVMAPNKTLAAQLANELRQLLP 88 >sp|Q74Z73|HAS1_EREGS ATP-dependent RNA helicase HAS1 OS=Eremothecium gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=HAS1 PE=3 SV=2 Length=504 Score = 85.2 bits (209), Expect = 5e-16, Method: Composition-based stats. Identities = 43/288 (15%), Positives = 96/288 (33%), Gaps = 19/288 (7%) Query 253 FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHR 312 G Q+ KL++ L R+ HL+ + + +D + + Sbjct 146 IGGANRRQEAEKLAKGVNLLIATPGRLLD-HLQNTKGFVFKNLKALVIDEADRILEIGFE 204 Query 313 EHVTKT-QILCAERRLLALFDD----RKNELAHLATH------GPENPKLEMLEKILQRQ 361 + + + +IL E R LF + +LA ++ ++ K L++ Sbjct 205 DEMKQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKETSTADGLEQG 264 Query 362 FSSSNSPR--GIIFT-RTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQR 418 + +S + ++FT + ++++L ++ I Q+ Sbjct 265 YVVCDSDKRFLLLFTFLKKFQNKKIIVFLSSCNSVKYYAELLN-YIDLPVLELHGKQKQQ 323 Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSV 478 + +F + +LV T VA GLDIP + ++++ + + GR Sbjct 324 KRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTKG 383 Query 479 Y---AFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIR 523 T R L + + A Q++ + ++ Sbjct 384 KGKSLMFLTPHELGFLRYLKAAKVPLNEYEFPANKIANVQSQLEKLLK 431 Score = 55.6 bits (132), Expect = 1e-06, Method: Composition-based stats. Identities = 31/136 (23%), Positives = 51/136 (38%), Gaps = 11/136 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYV----AKRHLETVD--GAKVVVLVNRVHLV 60 Q I P + G++++ TG+GKT A + L+ G V+V+ L Sbjct 66 QARTIPPLMAGRDVLGAAKTGSGKTL-AFLLPAIEMLHSLKFKPRNGTGVIVITPTRELA 124 Query 61 TQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 Q R +++ + G R LA+ +LLI T L L + + Sbjct 125 LQIFGVARELMEFHSQTFGIVIGGANRRQEAEKLAKGVNLLIATPGRLLDHLQNTKGFVF 184 Query 120 VELTVFSLIVVDECHH 135 L +V+DE Sbjct 185 KNLKA---LVIDEADR 197 >sp|P0C2N7|DRS1_CHAGB ATP-dependent RNA helicase DRS1 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=DRS1 PE=3 SV=1 Length=795 Score = 86.0 bits (211), Expect = 5e-16, Method: Composition-based stats. Identities = 31/136 (23%), Positives = 62/136 (46%), Gaps = 9/136 (7%) Query 425 QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-V 482 F+DG +N L+AT +A GLDI + V+ Y + V GR ARA +S A + Sbjct 559 SAFRDGKVNYLLATDLASRGLDIKGIDTVINYEAPQSLEIYVHRVGRTARAGRSGVAITL 618 Query 483 ATEGSRELKRELIN-------EALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAA 535 A E R++ + + + + +++ A A + E +I ++ Q ++ Sbjct 619 AAEPDRKVVKAAVRAGKAQGAKIISRVIDAADADKWQDQIDEMDDEIDEILQEEKEEKQL 678 Query 536 QAAQRENQRQQFPVEH 551 + + ++ + ++H Sbjct 679 AQIEMQVKKGENLIKH 694 Score = 58.3 bits (139), Expect = 2e-07, Method: Composition-based stats. Identities = 46/263 (17%), Positives = 86/263 (33%), Gaps = 19/263 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHL----ETVDGAKVVVLVNRVHLVTQ 62 Q + I AL GK+++ TG+GKT A L + V +VVVL L Q Sbjct 303 QAKTIPIALMGKDVVGGAVTGSGKTAAFVVPILERLLYRPKKVPTTRVVVLTPTRELAIQ 362 Query 63 HGEE---FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 D ++ + G + + G L D++I T + + Sbjct 363 CHSVATKLASHTDIKFCLAV--GGLSLKVQEGELRLRPDVVIATPGRFIDHMRNS---AS 417 Query 120 VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLD 179 + ++V+DE +D + + L R L +A+ + + Sbjct 418 FAVETVEILVLDEADRMLEDGFADELNEILTTLPKSRQTML-----FSATMTSTVDKLIR 472 Query 180 GAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQ 239 +N ++ + ++ +L+ + K+ QDP L+ Sbjct 473 VGLNKPARIMVDSQKQTAVTLAQEFVRLRPG--REEKRMGYLGPYLQDPVHRTSHYLLQA 530 Query 240 IHDHLEMPELSRKFGTQMYEQQV 262 D P+ R G + Sbjct 531 EEDCSPDPDHLRLAGAFEHRAPW 553 >sp|A8GV86|UVRB_RICB8 UvrABC system protein B OS=Rickettsia bellii (strain OSU 85-389) OX=391896 GN=uvrB PE=3 SV=1 Length=661 Score = 85.6 bits (210), Expect = 5e-16, Method: Composition-based stats. Identities = 34/179 (19%), Positives = 71/179 (40%), Gaps = 20/179 (11%) Query 370 GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD 429 ++ T T++ A L +LQ+ + S +++ ++ E+++ + Sbjct 448 VLVTTLTKKMAEDLTNYLQELK--------------YKTSYLHSNVHTLERIEILRDLRQ 493 Query 430 GTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGR-ARADQSVYAFVA 483 GT+++LV ++ EGLDIP C +V L +E+S++Q GR AR + A Sbjct 494 GTIDILVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGRAARNSEGRVILYA 553 Query 484 TEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQREN 542 + ++ + + + ++Q + I L + Q N Sbjct 554 DKMTKSIDKAISETMRRRTIQQEHNEKYGIIPKTINRTIHALAELEKVDSKLDKKQTHN 612 >sp|Q8TDD1|DDX54_HUMAN ATP-dependent RNA helicase DDX54 OS=Homo sapiens OX=9606 GN=DDX54 PE=1 SV=2 Length=881 Score = 86.0 bits (211), Expect = 5e-16, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 53/136 (39%), Gaps = 17/136 (13%) Query 347 ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA 406 E+ K +L +L + + ++F T+ A L L Q+ Sbjct 320 EDTKAAVLLHLLHNVVRPQD--QTVVFVATKHHAEYLTELLTTQR--------------V 363 Query 407 GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV 466 + + + ++ + KF G + L+ T +A GLDIP + V+ Y + Sbjct 364 SCAHIYSALDPTARKINLAKFTLGKCSTLIVTDLAARGLDIPLLDNVINYSFPAKGKLFL 423 Query 467 QARGR-ARADQSVYAF 481 GR ARA +S A+ Sbjct 424 HRVGRVARAGRSGTAY 439 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 47/127 (37%), Gaps = 12/127 (9%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVD---GAKVVVLVNRVHLVTQ---HGEEFR 68 L+GK+++ TG+GKT L+T GA+ ++L L Q +E Sbjct 131 LDGKDVVAMARTGSGKTACFLLPMFERLKTHSAQTGARALILSPTRELALQTLKFTKELG 190 Query 69 RMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLI 128 + + + M + F L D++I T L E ++L + Sbjct 191 KFTGLKTALILGGDRMEDQ--FAALHENPDIIIATPGRLVHV----AVEMSLKLQSVEYV 244 Query 129 VVDECHH 135 V DE Sbjct 245 VFDEADR 251 >sp|O60173|DBP7_SCHPO ATP-dependent RNA helicase dbp7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=dbp7 PE=3 SV=1 Length=709 Score = 85.6 bits (210), Expect = 5e-16, Method: Composition-based stats. Identities = 38/206 (18%), Positives = 75/206 (36%), Gaps = 25/206 (12%) Query 299 AVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKIL 358 D + L D ++ + + E + +L P +L L +L Sbjct 348 MKDTVKRLSDSALKDALYLKSSIVEE--TNDGYSQAPEQLLQRYVVVPPKLRLVSLVALL 405 Query 359 QRQFSSSNSPRGIIFT-------------RTRQSAHSLLLWLQQQQGLQTVDIR---AQL 402 + S + IIF R +A + ++++ + I A Sbjct 406 RSHVRSYK--KIIIFLSCSDSVDFHFEAFRCAINADEMEEAVKEKPDSEGDIISNAPALR 463 Query 403 LIGAGNSSQ-STHMTQRDQQEVIQKFQDGT---LNLLVATSVAEEGLDIPHCNVVVRYGL 458 + G N + ++Q+ + + F ++L+ T VA GLD+P+ ++VV+Y Sbjct 464 IDGKSNVYRLHGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARGLDLPNVDLVVQYDA 523 Query 459 LTNEISMVQARGR-ARADQSVYAFVA 483 + + GR ARA + A + Sbjct 524 PFSTDDYLHRIGRTARAGHNGAAIMF 549 Score = 47.9 bits (112), Expect = 3e-04, Method: Composition-based stats. Identities = 21/119 (18%), Positives = 42/119 (35%), Gaps = 15/119 (13%) Query 26 TGAGKTRAAAYVA--------KRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWT- 76 TG+GKT A K G V++ L Q ++ + + Sbjct 187 TGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVANKLNNNPLSH 246 Query 77 ---VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDE 132 + G ++ + + ++LI T L L + E ++++ +V+DE Sbjct 247 WIVSCNVIGGEKKKSEKARIRKGVNILIGTPGRLADHLENTEA---LDVSQVRWVVLDE 302 >sp|Q5ASK8|SUB2_EMENI ATP-dependent RNA helicase sub2 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=sub2 PE=3 SV=2 Length=434 Score = 84.5 bits (207), Expect = 5e-16, Method: Composition-based stats. Identities = 53/330 (16%), Positives = 108/330 (33%), Gaps = 49/330 (15%) Query 200 PQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLM---DQIHDHLEMPELSRKFGTQ 256 P C + H+++ Q + R D+ + I +E+ F Sbjct 125 PGECSVLVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDIEVLSNKDTFPNI 184 Query 257 MYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQD-----FYH 311 + +L+ L + V A L + L D R V + Sbjct 185 IVGTPG-RLNALVRDKKLSLRNVKAFVLDECDKMLDQIDMRRDVQEIFRATPTDKQVMMF 243 Query 312 REHVTKTQILCAERRLLALFDDRKNELAHLATHG--------PENPKLEMLEKILQRQFS 363 +++ ++ + + ++ L HG E K L ++L Sbjct 244 SATLSQDVRPICKKFMRNPLEVYVDDDTKLTLHGLQQYYIKLSEAEKNRKLNELLDSL-- 301 Query 364 SSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEV 423 + IIF ++ A+ L L++ ++ + + Sbjct 302 --EFNQVIIFVKSTIRANELDKLLREC-NFPSIAVHSGRY-------------------- 338 Query 424 IQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQS---VYA 480 ++F++ + VAT V G+DI N+ + Y L + S + GRA + + Sbjct 339 -KEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLSIS 397 Query 481 FVATEGSRELKRELINE---ALETLMEQAV 507 FV+T ++ +++ AL E+ V Sbjct 398 FVSTPEDEQVLKDIEKRFEVALPEYPEEGV 427 Score = 49.0 bits (115), Expect = 1e-04, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 47/135 (35%), Gaps = 14/135 (10%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDG-AKVVVLVNRVHLVTQ--- 62 Q I A+ +++ +G GKT LE V G V+V+ + L Q Sbjct 86 QQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQIKN 145 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHD----LLICTAELLQMALTSPEEEE 118 F + L T G P + D +++ T L AL ++ Sbjct 146 EYARFSKYLPDVKTAVFYGG--TPIQKDIEVLSNKDTFPNIIVGTPGRL-NALVRDKK-- 200 Query 119 HVELTVFSLIVVDEC 133 + L V+DEC Sbjct 201 -LSLRNVKAFVLDEC 214 >sp|Q81E85|CSHC_BACCR DEAD-box ATP-dependent RNA helicase CshC OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711) OX=226900 GN=cshC PE=2 SV=1 Length=389 Score = 84.1 bits (206), Expect = 5e-16, Method: Composition-based stats. Identities = 46/317 (15%), Positives = 96/317 (30%), Gaps = 22/317 (7%) Query 190 ANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPEL 249 ++ L + + P +L+ ++ +++ E+ Sbjct 36 QDVIAESPTGTGKTLAYLLPLLHKINPEVKQPQVVVLAPTRELVMQIHEEVQKFTAGTEI 95 Query 250 S--RKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQ 307 S G ++QV KL + + R+ L L R + D + Sbjct 96 SGASLIGGADIKRQVEKLKKHPRVIVGSPGRI--LELIRMKKLKMHEVKTIVFDEFDQIV 153 Query 308 DFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG-PENPKLEMLEKILQRQFSSSN 366 V R L F + A A P+L + + + Sbjct 154 KQKMMGAVQDVIKSTMRDRQLVFFSATMTKAAEDAARDLAVEPQLVRVTRAESKSLVEHT 213 Query 367 SPRGIIFTRTRQSAHSLLLWLQQ---------QQGLQTVDIRAQL-LIGAGNSSQSTHMT 416 II R+ + + + +I +L ++ + Sbjct 214 ---YII-CERREKNDYVRRIMHMGDVKAVAFLNDPFRLDEITEKLKFRKMKAAALHAEAS 269 Query 417 QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARAD 475 +++++ ++ F+ G L +L+AT +A G+DI V+ L + GR R Sbjct 270 KQEREATMRAFRGGKLEILLATDIAARGIDIDDLTHVIHLELPDTVDQYIHRSGRTGRMG 329 Query 476 QSVYA--FVATEGSREL 490 + V + R+L Sbjct 330 KEGTVVSLVTPQEERKL 346 Score = 64.0 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 6/128 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLE-TVDGAKVVVLVNRVHLVTQHGE 65 Q + I LEG+++I PTG GKT A + V +VVVL LV Q E Sbjct 25 QKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKINPEVKQPQVVVLAPTRELVMQIHE 84 Query 66 EFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 E ++ G + +L G + L + +++ + + + + +++ Sbjct 85 EVQKFTAGTEISGASLIGGADIKRQVEKLKKHPRVIVGSPGRILELIRMKK----LKMHE 140 Query 125 FSLIVVDE 132 IV DE Sbjct 141 VKTIVFDE 148 >sp|Q8TL39|HELS_METAC ATP-dependent DNA helicase Hel308 OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) OX=188937 GN=hel308 PE=3 SV=1 Length=730 Score = 85.6 bits (210), Expect = 5e-16, Method: Composition-based stats. Identities = 42/170 (25%), Positives = 72/170 (42%), Gaps = 12/170 (7%) Query 7 QWEVIMPAL-EGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q E + L EGKN++ +PT +GKT A + + + G K + +V L ++ Sbjct 28 QAEAVEKGLLEGKNLLAAIPTASGKTLLAELAMLKSV--LAGGKALYIVPLRALASEKFR 85 Query 66 EFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF 125 F+ + V +GD R +D+++ T+E L E + Sbjct 86 RFQDFSELGIRVGISTGDYDRR---DEGLGINDIIVATSEKTDSLL----RNETAWMQEI 138 Query 126 SLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGA 175 S++VVDE H D+ + KL++ P Q+L L+A+ G Sbjct 139 SVVVVDEVHLI--DSADRGPTLEVTLAKLRKMNPFCQILALSATVGNADE 186 Score = 37.5 bits (85), Expect = 0.52, Method: Composition-based stats. Identities = 40/237 (17%), Positives = 77/237 (32%), Gaps = 40/237 (17%) Query 262 VVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQIL 321 + K++ + L A L + DA L+ R D + + F+ K Sbjct 165 LRKMNPFCQILALSATVGNADELAAWLDAELVLSEWRPTDLMEGV--FFDGTFFCK---- 218 Query 322 CAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIF-------T 374 D++ + N L+ L + Q S+ + F Sbjct 219 -----------DKEKLIEQPTKDEAINLVLDTLREGGQCLVFESSRKNCMGFAKKATSAV 267 Query 375 RTRQSAHS------LLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 + SA + + + T + A + AG + +T ++ V F+ Sbjct 268 KKTLSAEDKEKLAGIADEILENSETDTASVLASC-VRAGTAFHHAGLTSPLRELVETGFR 326 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVV----RYGL-----LTNEISMVQARGRARADQ 476 +G + L+ +T GL++P V++ RY + Q GRA + Sbjct 327 EGYVKLISSTPTLAAGLNLPARRVIIRSYRRYSSDSGMQPIPVLEYKQMAGRAGRPR 383 >sp|Q93Y39|RH13_ARATH DEAD-box ATP-dependent RNA helicase 13 OS=Arabidopsis thaliana OX=3702 GN=RH13 PE=2 SV=3 Length=826 Score = 85.6 bits (210), Expect = 5e-16, Method: Composition-based stats. Identities = 40/218 (18%), Positives = 78/218 (36%), Gaps = 27/218 (12%) Query 337 ELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTV 396 ++ E K L IL R I+F + + L+ Sbjct 476 KIEESFIKCEEKEKDAYLYYILSVH----GQGRTIVFCTSVTDLRHISGLLK-------- 523 Query 397 DIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY 456 ++G + + M QR + + I +F+ +L+AT + G+DI + ++ Y Sbjct 524 ------ILGLDVCTLFSEMKQRARLKSIDRFRASENGILIATDLVARGIDIKNVRTIIHY 577 Query 457 GLLTNEISMVQARGR-AR--ADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM 513 L + V GR AR AD A + + + + ++E++ + + Sbjct 578 KLPHSAEVYVHRCGRTARAFADGCSIALIEPNETSKFYTLCKSFSMESV------KIFPL 631 Query 514 DQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEH 551 D + A + L A + REN + + +H Sbjct 632 DNSYMPAVRKRLYLARQIYEIERKGSRENADRTWLKKH 669 Score = 51.0 bits (120), Expect = 3e-05, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 48/145 (33%), Gaps = 23/145 (16%) Query 13 PALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA---------------------KVV 51 A +GK++I TG+GKT A + L + + Sbjct 224 AAYQGKDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRAL 283 Query 52 VLVNRVHLVTQHGEEFRRML-DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMA 110 ++ L Q E + V + G M L ++++ T L Sbjct 284 IITPTRELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPEIVVATPGRLWEL 343 Query 111 LTSPEEEEHVELTVFSLIVVDECHH 135 +++ E+ VEL S V+DE Sbjct 344 MSAGEKH-LVELHSLSFFVLDEADR 367 >sp|Q0UMB9|DBP4_PHANO ATP-dependent RNA helicase DBP4 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) OX=321614 GN=DBP4 PE=3 SV=1 Length=803 Score = 85.6 bits (210), Expect = 6e-16, Method: Composition-based stats. Identities = 43/258 (17%), Positives = 85/258 (33%), Gaps = 26/258 (10%) Query 265 LSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAE 324 + + L + R+ + +R DA +I + L + L Sbjct 195 VDDLKMLVLDEADRILDMGFQRDVDA-IIDYLPKERQTLLFSATQSKKVSDLARLSLQDP 253 Query 325 RRLLALFDDRKNELAHLATH---GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAH 381 + +D+ L + P KL+ L +Q +S + ++F + ++ Sbjct 254 EYVSVHAEDKSATPKSLQQNYIICPLEEKLDTLWSFIQ----ASKKSKILVFFSSAKAVR 309 Query 382 SLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVA 441 + + Q G Q + + KF + L AT VA Sbjct 310 FVYESFRHMQP------------GIPLLHIHGRQKQGARLDTTAKFSSAKNSCLFATDVA 357 Query 442 EEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR--ADQSVYAFVATEGSRELKRELINEA 498 GLD P + V++ + + + GR AR + F+A + + L + Sbjct 358 ARGLDFPAVDFVIQVDCPDDVDTYIHRVGRTARYNREGRGVLFLAPSEEEGMLKRLEAKK 417 Query 499 LETLMEQAVAAVQKMDQA 516 + +A+ QK Q+ Sbjct 418 VPV---EAINVRQKKRQS 432 Score = 51.7 bits (122), Expect = 2e-05, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 48/138 (35%), Gaps = 14/138 (10%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT--RAAAYVAKRHLETVDGAK-----VVVLVNRVHL 59 Q + + AL+G +I+ TG+GKT V + ++L L Sbjct 76 QRKAVPLALKGHDILGAAKTGSGKTLSFI-IPVLENLYRLQHVGADAGLGALILSPTREL 134 Query 60 VTQHGEEFRRMLDGR--WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE 117 Q + ++ + L G + L R + +L+ T + L+ + Sbjct 135 AIQIFDVLCKIGKHGHMFAAGLLIGGKSLESERQALPRMN-ILVATPGRMLQHLS---QT 190 Query 118 EHVELTVFSLIVVDECHH 135 + ++V+DE Sbjct 191 AAFLVDDLKMLVLDEADR 208 >sp|Q4WMS3|MAK5_ASPFU ATP-dependent RNA helicase mak5 OS=Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293) OX=330879 GN=mak5 PE=3 SV=2 Length=777 Score = 85.6 bits (210), Expect = 6e-16, Method: Composition-based stats. Identities = 31/139 (22%), Positives = 53/139 (38%), Gaps = 22/139 (16%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K L +L R ++FT + + L LQ Q Sbjct 493 KDLFLYTLLLYH----PKHRTLVFTNSISAVRRLTKLLQTLQLPAL-------------- 534 Query 410 SQSTHMTQRDQQEVIQKFQDGTLN---LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV 466 + + M Q+ + +++F + + +L+AT VA GLDI ++V+ Y + V Sbjct 535 ALHSSMAQKARLRSVERFSSPSSDPSTILIATDVAARGLDIKGIDLVIHYHAPRTADTYV 594 Query 467 QARGR-ARADQSVYAFVAT 484 GR ARA S + + Sbjct 595 HRSGRTARAGASGKSVIIC 613 Score = 47.5 bits (111), Expect = 4e-04, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 50/141 (35%), Gaps = 22/141 (16%) Query 15 LEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGA---------------KVVVLVNRVH 58 LEG ++I TG+GKT A + + +LE ++L Sbjct 236 LEGHDVIGKASTGSGKTLAFGIPILEHYLEKKRDDISAQKEQMSEKDSTPIALILSPTRE 295 Query 59 LVTQHGEEFRRMLDGRWTV----TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP 114 L Q + ++ V L+G + + L D++I T + L++ Sbjct 296 LAHQLSKHIGELIAQAPGVNARIALLTGGLSVQKQ-QRLLSGADIVIGTPGRVWEILSTG 354 Query 115 EEEEHVELTVFSLIVVDECHH 135 + ++ +VVDE Sbjct 355 QGL-IRKMQQIKFLVVDEADR 374 >sp|Q8SR01|DBP4_ENCCU ATP-dependent RNA helicase DBP4 OS=Encephalitozoon cuniculi (strain GB-M1) OX=284813 GN=DBP4 PE=3 SV=2 Length=449 Score = 84.5 bits (207), Expect = 6e-16, Method: Composition-based stats. Identities = 30/144 (21%), Positives = 56/144 (39%), Gaps = 19/144 (13%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K+ L + S+ +GI+F T + + + +R ++ Sbjct 228 KINYLHTFI----GSNPEVKGIVFFSTCKEVK------FHCLLFERLKLRNRIF------ 271 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 S M+Q+ + +V ++F +L T + GLD P +VV++Y N + V Sbjct 272 CLSGGMSQKQRIDVFKRFVKEKNGILFCTDLGSRGLDFPKVDVVIQYDCPCNVETYVHRV 331 Query 470 GR-ARAD--QSVYAFVATEGSREL 490 GR AR Y ++ + L Sbjct 332 GRTARNSERGESYVYLVHGEEKLL 355 Score = 54.8 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 44/196 (22%), Positives = 76/196 (39%), Gaps = 19/196 (10%) Query 1 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAY------VAKRHLETVDGAKVVVLV 54 + ++ Q +VI ALEG +II TG GKT A + DG +V+ Sbjct 22 VSMKEVQQKVIPMALEGHDIIGSSQTGTGKTL-AFLVPTLQRLVSLGWGGGDGLGCLVIT 80 Query 55 NRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHD--LLICTAELLQMALT 112 L Q + R+ ++TV + MG L + + +L+CT L L Sbjct 81 PTRELALQIFDVLSRI--AKYTVLSTGLIMGGLEAEDELLKVNQMNILVCTPGRLLQHLQ 138 Query 113 SPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGT 172 E ++ ++++DE D + + + LE L+ Q L +A+P Sbjct 139 ---ENPYLSTANVQILILDEA-----DKMIEMGFKEVLEDILEYIPQKKQTLLFSATPKA 190 Query 173 GGASKLDGAINHVLQL 188 A L ++ + Sbjct 191 STARILKLEDPRIISI 206 >sp|Q750Q4|MS116_EREGS ATP-dependent RNA helicase MSS116, mitochondrial OS=Eremothecium gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=MSS116 PE=3 SV=1 Length=658 Score = 85.2 bits (209), Expect = 6e-16, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 50/130 (38%), Gaps = 15/130 (12%) Query 358 LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ 417 ++ + S++ + I+F T + LQ Q G ++Q Sbjct 380 IREEASANPKLKAIVFMPTIVAVEYWGELLQSQ------------CRGTPVLLFHGGLSQ 427 Query 418 RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR---GRARA 474 + +++F+ +LV T VA G+D+ V + G+ T+ + + GRA Sbjct 428 GRRNSTMKRFRAMDSGILVCTDVAARGMDVSDVQHVYQVGVPTSPDNYIHRIGRTGRAGR 487 Query 475 DQSVYAFVAT 484 S F+A Sbjct 488 KGSSTIFLAE 497 Score = 50.2 bits (118), Expect = 5e-05, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 48/138 (35%), Gaps = 15/138 (11%) Query 7 QWEVIMPALEGKNIIIW-LPTGAGKTRAAAY--VAKRHLETVDGA--KVVVLVNRVHLVT 61 Q + + P L+ ++ ++ TG GKT A + +R LE K VV+ L Sbjct 153 QQKTLKPILQTEHDVVARAKTGTGKTL-AFLMPLFQRLLEGPPSENVKAVVIAPTRDLAA 211 Query 62 QHGEEFRRMLDGRWT------VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE 115 Q E M + V + G R ++++ T L L + Sbjct 212 QIFNEINEMRNANRKLRRFNAVVMMGGSSRTETFRSLERRRPNIVVATPGRLIDMLEACG 271 Query 116 EEEHVELTVFSLIVVDEC 133 + E+ L DE Sbjct 272 PKYFTEVDFKVL---DEA 286 >sp|Q9LIH9|RH51_ARATH DEAD-box ATP-dependent RNA helicase 51 OS=Arabidopsis thaliana OX=3702 GN=RH51 PE=2 SV=1 Length=568 Score = 84.8 bits (208), Expect = 7e-16, Method: Composition-based stats. Identities = 37/251 (15%), Positives = 81/251 (32%), Gaps = 40/251 (16%) Query 253 FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHR 312 G + +++ + L R+ HL+ + H +D + + Sbjct 196 IGGNNRRSEAQRIASGSNLVIATPGRLLD-HLQNTKAFIYKHLKCLVIDEADRILEENFE 254 Query 313 EHVTKTQILCAERRLLALFD----DRKNELAHLATHGPENPKLEMLEK------------ 356 E + K + + R ALF + +LA ++ P + ++ + Sbjct 255 EDMNKILKILPKTRQTALFSATQTSKVKDLARVSLTSPVHVDVDDGRRKVTNEGLEQGYC 314 Query 357 ---------ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG 407 +L + + + ++F T +S + ++ D+ + G Sbjct 315 VVPSKQRLILLISFLKKNLNKKIMVFFSTCKSVQ------FHTEIMKISDVDVSDIHG-- 366 Query 408 NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 M Q + + F +L+ T VA GLDIP + +++Y + Sbjct 367 ------GMDQNRRTKTFFDFMKAKKGILLCTDVAARGLDIPSVDWIIQYDPPDKPTEYIH 420 Query 468 ARGRARADQSV 478 GR + Sbjct 421 RVGRTARGEGA 431 Score = 61.7 bits (148), Expect = 1e-08, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 53/135 (39%), Gaps = 9/135 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA----AA-YVAKRHLETVDGAKVVVLVNRVHLVT 61 Q I P LEGK+++ TG+GKT A A + K +G V+V+ L Sbjct 116 QAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTGVIVICPTRELAI 175 Query 62 QHGEEFRRMLDGRWT-VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 Q +L V+ + G R+ +A +L+I T L L + + + Sbjct 176 QTKNVAEELLKHHSQTVSMVIGGNNRRSEAQRIASGSNLVIATPGRLLDHLQNTKAFIY- 234 Query 121 ELTVFSLIVVDECHH 135 +V+DE Sbjct 235 --KHLKCLVIDEADR 247 >sp|B0SLS0|UVRB_LEPBP UvrABC system protein B OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) OX=456481 GN=uvrB PE=3 SV=1 Length=664 Score = 85.2 bits (209), Expect = 7e-16, Method: Composition-based stats. Identities = 37/224 (17%), Positives = 91/224 (41%), Gaps = 22/224 (10%) Query 337 ELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTV 396 L + P ++E L ++ + R +I T T++ + L + ++ Sbjct 416 LLDPVVEVRPTTNQIEDLLNEIR--LRINQKERVLITTLTKKMSEDLTDYYKE------- 466 Query 397 DIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY 456 +G + + + ++ E+I+ + G + +V ++ EGLDIP ++V Sbjct 467 -------VGLKIAYLHSEIDTIERTEIIRDLRKGVYDCIVGINLLREGLDIPEVSLVAIL 519 Query 457 G-----LLTNEISMVQARGRARADQSVYAFVATEG-SRELKRELINEALETLMEQAVAAV 510 L N S+VQ GRA + + A + + + +K+ + L+++A Sbjct 520 DADKEGFLRNYKSLVQTIGRAARNVNGKAILYADRMTDSIKKAMSETERRRLIQEAHNEK 579 Query 511 QKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQL 554 + Q +I D+ + + ++ ++ ++F ++ + Sbjct 580 MGITPQTIQKEIHDILPREMAEEDSKEEALKDLEKEFTLKKYKT 623 >sp|B0SDE2|UVRB_LEPBA UvrABC system protein B OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) OX=355278 GN=uvrB PE=3 SV=1 Length=664 Score = 85.2 bits (209), Expect = 7e-16, Method: Composition-based stats. Identities = 37/224 (17%), Positives = 91/224 (41%), Gaps = 22/224 (10%) Query 337 ELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTV 396 L + P ++E L ++ + R +I T T++ + L + ++ Sbjct 416 LLDPVVEVRPTTNQIEDLLNEIR--LRINQKERVLITTLTKKMSEDLTDYYKE------- 466 Query 397 DIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY 456 +G + + + ++ E+I+ + G + +V ++ EGLDIP ++V Sbjct 467 -------VGLKIAYLHSEIDTIERTEIIRDLRKGVYDCIVGINLLREGLDIPEVSLVAIL 519 Query 457 G-----LLTNEISMVQARGRARADQSVYAFVATEG-SRELKRELINEALETLMEQAVAAV 510 L N S+VQ GRA + + A + + + +K+ + L+++A Sbjct 520 DADKEGFLRNYKSLVQTIGRAARNVNGKAILYADRMTDSIKKAMSETERRRLIQEAHNEK 579 Query 511 QKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQL 554 + Q +I D+ + + ++ ++ ++F ++ + Sbjct 580 MGITPQTIQKEIHDILPREMAEEDSKEEALKDLEKEFTLKKYKT 623 >sp|Q4P5U4|DBP4_USTMA ATP-dependent RNA helicase DBP4 OS=Ustilago maydis (strain 521 / FGSC 9021) OX=237631 GN=DBP4 PE=3 SV=2 Length=916 Score = 85.6 bits (210), Expect = 7e-16, Method: Composition-based stats. Identities = 46/302 (15%), Positives = 99/302 (33%), Gaps = 36/302 (12%) Query 286 RYNDALLIHDTVRAVD-----ALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH 340 L++ + R +D L A+ + R T +R+ L + + Sbjct 203 SNVQVLVLDEADRILDMGFSRTLNAIVENLPRNRQTMLFSATQTKRVKDLARLSLQDPEY 262 Query 341 LATHGPENP--------------KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLW 386 +A PEN +LE +L + + ++F + + + Sbjct 263 VAVREPENEGCTPRGLEQHYMLVELEKKLDLLFSFIRTHTKCKALVFMSSCRQVQFVHET 322 Query 387 LQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLD 446 + + G + Q + ++ +F LL AT +A GLD Sbjct 323 FCKLRP------------GVSLMALHGKQKQAKRLQIFTQFTKTQHALLFATDIAARGLD 370 Query 447 IPHCNVVVRYGLLTNEISMVQARGR-AR--ADQSVYAFVATEGSRELKRELINEALET-L 502 P + V++ + + + + GR AR A + FV + + L + + Sbjct 371 FPAVDWVIQLDVPEDVDTYIHRVGRTARYTAKGNSLLFVLPSEEKGILEALATKNIAIGR 430 Query 503 MEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQ-RQQFPVEHVQLLCINCMV 561 ++ + Q + ++ Q L ++A + R ++ + V L + Sbjct 431 IKPKESKTQSIQNQLQAFAFQEPQIKHLAQKAFVSYVRSIHLQKNKEIFDVTALALEPFA 490 Query 562 AV 563 A Sbjct 491 AA 492 Score = 53.3 bits (126), Expect = 6e-06, Method: Composition-based stats. Identities = 22/139 (16%), Positives = 47/139 (34%), Gaps = 8/139 (6%) Query 2 ELRSYQWEVIMPALEGKNIIIWLPTGAGKT---RAAAYVAKRHLETVDGA--KVVVLVNR 56 ++ Q + + +L+GK+++ TG+GKT + +V+ Sbjct 80 DMTDIQAKSLSLSLKGKDVLGAARTGSGKTLAFLIPVLEILYRRKWGPSDGLGALVISPT 139 Query 57 VHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE 116 L Q E R++ L ++LI T L + ++ Sbjct 140 RELAIQIFEVLRKIGSYHTFSAGLVIGGKDVKQEKDRLSRINILIATPGRLLQHM---DQ 196 Query 117 EEHVELTVFSLIVVDECHH 135 + + ++V+DE Sbjct 197 TLGFDTSNVQVLVLDEADR 215 >sp|Q8W4E1|RH47_ARATH DEAD-box ATP-dependent RNA helicase 47, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RH47 PE=1 SV=2 Length=551 Score = 84.8 bits (208), Expect = 7e-16, Method: Composition-based stats. Identities = 25/121 (21%), Positives = 56/121 (46%), Gaps = 2/121 (2%) Query 380 AHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATS 439 A S++ ++ + L+ V + + G ++ + + + V++KF++G + +LV Sbjct 407 AQSVIAFMNHSRQLKDVVYKLEAR-GMNSAEMHGDLGKLGRSTVLKKFKNGEIKVLVTNE 465 Query 440 VAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEA 498 ++ GLD+ C++VV L T+ + GR R + E S+ + + + Sbjct 466 LSARGLDVAECDLVVNLELPTDAVHYAHRAGRTGRLGRKGTVVTVCEESQVFIVKKMEKQ 525 Query 499 L 499 L Sbjct 526 L 526 Score = 36.3 bits (82), Expect = 0.97, Method: Composition-based stats. Identities = 25/143 (17%), Positives = 46/143 (32%), Gaps = 21/143 (15%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAK------------RHLETVDGAKV--VV 52 Q + ++G + +I TG+GKT A H E ++ ++ Sbjct 137 QSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMI 196 Query 53 LVNRVHLVTQHGEEFRRMLDG--RWTVTTLSGDMGPRAGFGHLARCH-DLLICTAELLQM 109 + L Q E ++L R V L G L + +++ T + Sbjct 197 VAPSRELGMQIVREVEKLLGPVHRRMVQQLVGGANRMRQEEALKKNKPAIVVGTPGRIAE 256 Query 110 ALTSPEEEEHVELTVFSLIVVDE 132 + H +V+DE Sbjct 257 ISKGGKLHTHGCR----FLVLDE 275 >sp|P75172|Y623_MYCPN Probable ATP-dependent RNA helicase MG425 homolog OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1) OX=272634 GN=MPN_623 PE=3 SV=1 Length=450 Score = 84.1 bits (206), Expect = 8e-16, Method: Composition-based stats. Identities = 51/341 (15%), Positives = 115/341 (34%), Gaps = 53/341 (16%) Query 205 PQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEM--PELSRKFGTQMYEQQV 262 P ++ ++P K P +L +++ + + ++ G QQ+ Sbjct 60 PVIETLLKKPSK--GTTQTLVVAPTRELAEQIKTTFINFAKHTHLKVVSLIGGIPIWQQL 117 Query 263 VKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTV--------------RAVDALAALQD 308 +L + RV L R + + + D L+ ++ Sbjct 118 KQLENQPEIVVGTMGRVMDLLERGVIKFEHLEHLIIDEVDLMLDRGFKRKLFDLLSRIEK 177 Query 309 F----YHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKL----------EML 354 F + + I A++ EL P+N KL Sbjct 178 FEQIAVYSASYNEETIETAKQITKNGIFLAAPELKQ-NAPEPDN-KLIDQFVCYLFSNRK 235 Query 355 EKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH 414 ++ L S + + I+F T++ L ++L++ D++ L G Sbjct 236 KQALYSLVSQTRAKSIIVFCDTKKLVDELCIFLRKN------DVKTYPLHG--------D 281 Query 415 MTQRDQQEVIQKFQDGTLNL-LVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-A 472 Q ++ ++ F + T + LV T + G+ + ++VV Y N + + GR Sbjct 282 KAQFIRERNLKLFANTTAPIVLVTTDLIGRGIHVEGVDMVVNYSACVNFETYLHRMGRTG 341 Query 473 RADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM 513 R + +++ + LE + ++ ++ ++ M Sbjct 342 RNNHKGSCITFC---TSHEKQAFLKLLEQVNDKRISPLRPM 379 Score = 53.3 bits (126), Expect = 5e-06, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 47/130 (36%), Gaps = 8/130 (6%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGA--KVVVLVNRVHLVTQH 63 Q I L+ +N+I+ PTG GKT V + L+ + +V+ L Q Sbjct 30 QQLAIPQFLQHQNLIVHSPTGTGKTAVFGIPVIETLLKKPSKGTTQTLVVAPTRELAEQI 89 Query 64 GEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 F V +L G + L ++++ T + L E ++ Sbjct 90 KTTFINFAKHTHLKVVSLIGGIPIWQQLKQLENQPEIVVGTMGRVMDLL----ERGVIKF 145 Query 123 TVFSLIVVDE 132 +++DE Sbjct 146 EHLEHLIIDE 155 >sp|Q72XV1|UVRB_BACC1 UvrABC system protein B OS=Bacillus cereus (strain ATCC 10987 / NRS 248) OX=222523 GN=uvrB PE=3 SV=1 Length=658 Score = 84.8 bits (208), Expect = 8e-16, Method: Composition-based stats. Identities = 35/199 (18%), Positives = 79/199 (40%), Gaps = 20/199 (10%) Query 365 SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI 424 + + R +I T T++ + L +L+ +G + + + ++ E+I Sbjct 443 AKNERVLITTLTKKMSEDLTDYLKD--------------VGIKVNYLHSEVKTLERIEII 488 Query 425 QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGR-ARADQSV 478 + + G ++LV ++ EGLDIP ++V L +E S++Q GR AR + Sbjct 489 RDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNENGR 548 Query 479 YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA 538 A +R ++ + +++A + Q +RD+ +A + Sbjct 549 VIMYADRITRSMEIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAEETETY 608 Query 539 QRENQRQQFPVEHVQLLCI 557 + ++ E + + Sbjct 609 EATPAKKMTKKEREKTIAK 627 >sp|Q3SIK7|UVRB_THIDA UvrABC system protein B OS=Thiobacillus denitrificans (strain ATCC 25259) OX=292415 GN=uvrB PE=3 SV=1 Length=675 Score = 84.8 bits (208), Expect = 8e-16, Method: Composition-based stats. Identities = 34/183 (19%), Positives = 68/183 (37%), Gaps = 20/183 (11%) Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 R ++ T T++ A L +L + G + + ++ E+I+ Sbjct 450 GERVLVTTLTKRMAEDLTDYLAE--------------HGVKVRYLHSDIDTVERVEIIRD 495 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGR-ARADQSVYA 480 + G ++LV ++ EGLDIP ++V L +E S++Q GR AR Sbjct 496 LRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARHLNGTAI 555 Query 481 FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR 540 A + ++R + + A + +I+D+ A++ + Sbjct 556 LYADRITDSMQRAIGETERRRAKQIAFNTEHGITPRGVVKRIKDIIDGVYDADASRQELK 615 Query 541 ENQ 543 Q Sbjct 616 AAQ 618 Score = 34.0 bits (76), Expect = 6.2, Method: Composition-based stats. Identities = 16/65 (25%), Positives = 23/65 (35%), Gaps = 7/65 (11%) Query 8 WEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEF 67 E I L + ++ TG+GKT A V R G +++ L Q E Sbjct 30 IEGIDDGLSYQTLLGV--TGSGKTYTMANVIAR-----AGRPALIMAPNKTLAAQLYAEM 82 Query 68 RRMLD 72 R Sbjct 83 REFFP 87 >sp|A3PFD7|UVRB_PROM0 UvrABC system protein B OS=Prochlorococcus marinus (strain MIT 9301) OX=167546 GN=uvrB PE=3 SV=1 Length=679 Score = 84.8 bits (208), Expect = 8e-16, Method: Composition-based stats. Identities = 90/583 (15%), Positives = 179/583 (31%), Gaps = 125/583 (21%) Query 7 QWEVIMPALEGKNI-----IIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVT 61 Q E I ++G N + TG GKT A V ++ G +VL + L Sbjct 16 QPEAIKKLVKGVNTGKEFQTLLGATGTGKTFTIANVIQQT-----GRPALVLAHNKTLAA 70 Query 62 QHGEEFRRMLDGRWTVTTLSG---------------------------DMGPRAGFGHLA 94 Q E R +S DM + L Sbjct 71 QLCNELREFFPKNAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDMLRHSATRSLF 130 Query 95 RCHDLLICTAELLQMALTSPEEE-----EHVELTVFSLIVVDECHHTHKDTVYNVIMSQY 149 D+++ + L P E + +L + + +++ +QY Sbjct 131 ERKDVIVVASISCIYGLGIPSEYLKAAVKFEVGKSINL----------RSYLRSLVENQY 180 Query 150 LELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQ--NCCPQL 207 ++ + ++ G + + + ++ + P L Sbjct 181 TRNDIEITRGRFRIKG----DVLEIGPAYEDRLIRIELFGDEVEAIRYVDPTTGEILESL 236 Query 208 QEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHL---EMPELSRKFGTQMYEQQVVK 264 ++ S P K + R + + +L Q+ ++ E R Y+ +++K Sbjct 237 EQVSVYPAKHFVTPKERLESAISAIRSELKTQLDKFTYEGKLLEAQRLEQRTKYDLEMLK 296 Query 265 -------LSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTK 317 + A +E+ L Y + + L Y+ + K Sbjct 297 EVGYCNGVENYARHLSGREEGSPPECLIDYFPKDWLLVVDESHVTCPQLHAMYNGDQSRK 356 Query 318 TQILCAERRL-----------LALFDDRKNELAHLATHG--------------------- 345 ++ RL ++ K L AT G Sbjct 357 KVLIDHGFRLPSAADNRPLKCEEFWEKSKQTLFISATPGQWELDQCDGEFIEQVIRPTGV 416 Query 346 -----PENPKLEMLEKILQRQ-FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIR 399 P +E +L + + R ++ T T++ A L +L + + +R Sbjct 417 LDPVIDVRPSEGQIEDLLSEIRIRAEKNQRVLVTTLTKRMAEDLTDFLSENK------VR 470 Query 400 AQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-- 457 + L + + ++ E+IQ + G ++LV ++ EGLD+P ++V Sbjct 471 VRYL--------HSEIHSIERIEIIQDLRMGEYDVLVGVNLLREGLDLPEVSLVAILDAD 522 Query 458 ---LLTNEISMVQARGRARADQSVYAFVATEGSRELKRELINE 497 L E S++Q GRA A + + + + I+E Sbjct 523 KEGFLRAERSLIQTIGRAARHVEGVALLYADNFTDSMKRAISE 565 >sp|P26802|DDX51_DROME Probable ATP-dependent RNA helicase Dbp73D OS=Drosophila melanogaster OX=7227 GN=Dbp73D PE=2 SV=3 Length=687 Score = 84.8 bits (208), Expect = 9e-16, Method: Composition-based stats. Identities = 38/189 (20%), Positives = 78/189 (41%), Gaps = 15/189 (8%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 R + FT + A L L+ + + S S +++ + + E ++ F Sbjct 446 RFLCFTNSSDQATRLTFVLKVLFQKYSTKV----------SELSGNLSAKVRNERLRDFA 495 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAF-VATEG 486 G +N L+ + G+D+ +VV+ Y + + + GR ARA + A V TE Sbjct 496 AGKINGLICSDALARGIDVADVDVVLSYETPRHITTYIHRVGRTARAGRKGTAVTVLTEQ 555 Query 487 SRELKRELINEALETLME--QAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQR 544 L ++++++A + L E ++ EY+ + L+ + K Q +N+ Sbjct 556 DMTLFKKILSDANKGLGEEIHVSPDIEIQHAVEYKEALAGLRSEKV-KNKNQKMAEKNRV 614 Query 545 QQFPVEHVQ 553 + H + Sbjct 615 ATKALIHKK 623 Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 39/127 (31%), Gaps = 14/127 (11%) Query 20 IIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLV--NRVHLVTQHGEEFRR-MLDGRWT 76 I + PTG+GKT A A + L KV LV L Q Sbjct 186 ICVSAPTGSGKTLAFAIPIVQLLSQRVDCKVRALVVLPVAELALQVYRVISELCSKTELE 245 Query 77 VTTLS--------GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLI 128 V LS + G D+++ T L L + + L + Sbjct 246 VCLLSKQHKLEDEQEKLVEQYKGKYYSKADIVVTTPGRLVDHLHATKG---FCLKSLKFL 302 Query 129 VVDECHH 135 V+DE Sbjct 303 VIDEADR 309 >sp|A0PP48|UVRB_MYCUA UvrABC system protein B OS=Mycobacterium ulcerans (strain Agy99) OX=362242 GN=uvrB PE=3 SV=1 Length=701 Score = 84.8 bits (208), Expect = 9e-16, Method: Composition-based stats. Identities = 33/172 (19%), Positives = 69/172 (40%), Gaps = 20/172 (12%) Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 R ++ T T++ A L +L + +G + + + E++++ Sbjct 447 DQRVLVTTLTKKMAEDLTDYLLE--------------MGIRVRYLHSEVDTLRRVELLRQ 492 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L + S++Q GRA + S Sbjct 493 LRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSARSLIQTIGRAARNVSGEVH 552 Query 482 VATEGSRELKRELINEALETLMEQ-AVAAVQKMDQAEYQAKIRDLQQAALTK 532 + + + +E I+E +Q A +D + KI D+ + Sbjct 553 MYADKITDSMKEAIDETERRRAKQVAYNEANGIDPQPLRKKIADILDQVYRE 604 >sp|A6ZL85|MAK5_YEAS7 ATP-dependent RNA helicase MAK5 OS=Saccharomyces cerevisiae (strain YJM789) OX=307796 GN=MAK5 PE=3 SV=1 Length=769 Score = 84.8 bits (208), Expect = 9e-16, Method: Composition-based stats. Identities = 49/292 (17%), Positives = 94/292 (32%), Gaps = 52/292 (18%) Query 229 FGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN 288 F +LL+K I ++ L ++ + E L E+R + + Sbjct 306 FLELLEKDNTLIKRFSKVDTLILDEADRLLQDGHFDEFEKIIKHLLVERRKNRENSEGSS 365 Query 289 DAL--LIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATH-- 344 LI ++D L V + E L A+ +++ + Sbjct 366 KIWQTLIFSATFSIDLFDKLSS---SRQVKDRRFKNNEDELNAVIQHLMSKIHFNSKPVI 422 Query 345 ---GPENPKLEMLEKILQR-----------QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQ 390 PE+ +++ L F + +IF S L ++L Sbjct 423 IDTNPESKVSSQIKESLIECPPLERDLYCYYFLTMFPGTTLIFCNAIDSVKKLTVYLNN- 481 Query 391 QGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN----------------L 434 +G + MTQ+++ + +++F+ + + Sbjct 482 -------------LGIPAFQIHSSMTQKNRLKSLERFKQQSAKQKTINHSNPDSVQLSTV 528 Query 435 LVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATE 485 L+A+ VA GLDIP V+ Y L + + GR ARA + + Sbjct 529 LIASDVAARGLDIPGVQHVIHYHLPRSTDIYIHRSGRTARAGCEGVSAMICS 580 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 47/347 (14%), Positives = 108/347 (31%), Gaps = 44/347 (13%) Query 26 TGAGKTR-----AAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDG-----RW 75 TG+GKT + + ++ L Q + +++ + ++ Sbjct 213 TGSGKTLAYGIPIVEKLISNFSQKNKKPISLIFTPTRELAHQVTDHLKKICEPVLAKSQY 272 Query 76 TVTTLSG--DMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDEC 133 ++ +L+G + + ++I T L + + +++DE Sbjct 273 SILSLTGGLSIQKQQRLLKYDNSGQIVIATPGRFLE-LLEKDNTLIKRFSKVDTLILDEA 331 Query 134 HHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLD 193 +D ++ L ++R + S+ I L A Sbjct 332 DRLLQDGHFDEFEKIIKHLLVERRK-------------NRENSEGSSKIWQTLIFSATFS 378 Query 194 TWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKF 253 L + + + + ++D +++ LM +IH + + + Sbjct 379 I-----------DLFDKLSSSRQVKDRRFKNNEDELNAVIQHLMSKIHFNSKPVIIDTNP 427 Query 254 GTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHRE 313 +++ Q L E L+ L + LI A+D++ L + + Sbjct 428 ESKVSSQIKESLIEC---PPLERDLYCYYFLTMFPGTTLIF--CNAIDSVKKLTVYLNNL 482 Query 314 HVTKTQILC--AERRLLALFDDRKNELAHLATHGPENPKLEMLEKIL 358 + QI ++ L + K + A T NP L +L Sbjct 483 GIPAFQIHSSMTQKNRLKSLERFKQQSAKQKTINHSNPDSVQLSTVL 529 >sp|A4YAN1|RAPA_SHEPC RNA polymerase-associated protein RapA OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) OX=319224 GN=rapA PE=3 SV=1 Length=968 Score = 85.2 bits (209), Expect = 9e-16, Method: Composition-based stats. Identities = 74/453 (16%), Positives = 153/453 (34%), Gaps = 42/453 (9%) Query 27 GAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGP 86 G GKT A + + L T +V+V+V L Q E R + R++V + Sbjct 179 GLGKTIEAGLIIHQQLLTGRAERVLVIVPD-TLRHQWLVEMLRRFNLRFSVFDEDRCVEA 237 Query 87 RAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHT--HKDTVYNV 144 A + L+IC+ L + + + L+VVDE HH ++ Sbjct 238 YADHDNPFYTEQLVICS----LELLRKKKRLDQALDADWDLLVVDEAHHLEWTEEAPSRA 293 Query 145 IMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCA-NLDTWCIMSPQNC 203 ++ ++ +P VL LTA+P G +H +L + D + Sbjct 294 -----YQVVEALSEVVPGVLLLTATP------DQLGHESHFARLRLLDPDRFYDYDAFLA 342 Query 204 CPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVV 263 + + + + D + L +L+ + ++ R + ++ Sbjct 343 EEDSYKDVAMAAEALAG-NAKLPDAAINSLTELLSEK----DIAPSIRLIQADGIDSELQ 397 Query 264 KLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCA 323 + + + L L ++ L R + A + R + + + ++ Sbjct 398 QAARSELLQELLDRHGTGRVLYRNSRASVKGFPKRFFNPHPQTMPEQYLTAARVSSMMGG 457 Query 324 ERRL---LALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSA 380 + L A + + K + L S S + +I ++A Sbjct 458 HKTLEAKAAQALSPEKLYQEFEDNSASWWKFDPRVDWLIAFLKSHRSKKVLIIASQAETA 517 Query 381 HSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF--QDGTLNLLVAT 438 SL L+ ++G+Q M+ ++ + F ++G L+ + Sbjct 518 LSLEEALRTREGIQATVFH-------------EGMSIIERDKAGAYFAQEEGGAQALICS 564 Query 439 SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 + EG + + +V + L N + Q GR Sbjct 565 EIGSEGRNFQFASHLVLFDLPLNPDLLEQRIGR 597 >sp|A1RFP5|RAPA_SHESW RNA polymerase-associated protein RapA OS=Shewanella sp. (strain W3-18-1) OX=351745 GN=rapA PE=3 SV=1 Length=968 Score = 85.2 bits (209), Expect = 1e-15, Method: Composition-based stats. Identities = 76/452 (17%), Positives = 149/452 (33%), Gaps = 40/452 (9%) Query 27 GAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGP 86 G GKT A + + L T +V+V+V L Q E R + R++V + Sbjct 179 GLGKTIEAGLIIHQQLLTGRAERVLVIVPD-TLRHQWLVEMLRRFNLRFSVFDEDRCVEA 237 Query 87 RAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHT--HKDTVYNV 144 A + L+IC+ L + + + L+VVDE HH ++ Sbjct 238 YADHDNPFYTEQLVICS----LELLRKKKRLDQALDADWDLLVVDEAHHLEWTEEAPSRA 293 Query 145 IMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCC 204 ++ ++ +P VL LTA+P G +H +L LD Sbjct 294 -----YQVVEALSEVVPGVLLLTATP------DQLGHESHFARL-RLLDPDRFYDYDAFL 341 Query 205 PQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVK 264 + E+S + D + ++ ++ R + V + Sbjct 342 AE--ENSYKDVA-IAAEALAGNAKLPDAAINSLTELLSEKDIAPSIRLIQADGIDSDVQQ 398 Query 265 LSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAE 324 + + L L ++ L R + A + R + + + ++ Sbjct 399 AARSELLQELLDRHGTGRVLYRNSRASVKGFPKRFFNPHPQTMPEQYLTAARVSSMMGGH 458 Query 325 RRL---LALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAH 381 + L A + + K + L S S + +I ++A Sbjct 459 KTLEAKAAQALSPEKLYQEFEDNSASWWKFDPRVDWLIAFLKSHRSKKVLIIASQAETAL 518 Query 382 SLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF--QDGTLNLLVATS 439 SL L+ ++G+Q M+ ++ + F ++G L+ + Sbjct 519 SLEEALRTREGIQATVFH-------------EGMSIIERDKAGAYFAQEEGGAQALICSE 565 Query 440 VAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 + EG + + +V + L N + Q GR Sbjct 566 IGSEGRNFQFASHLVLFDLPLNPDLLEQRIGR 597 >sp|Q7MM80|UVRB_VIBVY UvrABC system protein B OS=Vibrio vulnificus (strain YJ016) OX=196600 GN=uvrB PE=3 SV=2 Length=676 Score = 84.8 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 76/185 (41%), Gaps = 20/185 (11%) Query 366 NSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQ 425 R ++ T T++ A L +L + D++ + L + + ++ E+I+ Sbjct 446 KDERVLVTTLTKRMAEDLTEYLHEH------DVKVRYL--------HSDIDTVERVEIIR 491 Query 426 KFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYA 480 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + A Sbjct 492 DLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLHGKA 551 Query 481 FVATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQ 539 + + ++ +K+ + +QA + + I+D+ + ++ + Sbjct 552 ILYADSITKSMKKAMDETERRREKQQAYNEKMGIQPQALKRNIKDIMELGDITKSRKQKV 611 Query 540 RENQR 544 + Sbjct 612 SKTVP 616 >sp|Q8D891|UVRB_VIBVU UvrABC system protein B OS=Vibrio vulnificus (strain CMCP6) OX=216895 GN=uvrB PE=3 SV=1 Length=676 Score = 84.8 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 76/185 (41%), Gaps = 20/185 (11%) Query 366 NSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQ 425 R ++ T T++ A L +L + D++ + L + + ++ E+I+ Sbjct 446 KDERVLVTTLTKRMAEDLTEYLHEH------DVKVRYL--------HSDIDTVERVEIIR 491 Query 426 KFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYA 480 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + A Sbjct 492 DLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLHGKA 551 Query 481 FVATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQ 539 + + ++ +K+ + +QA + + I+D+ + ++ + Sbjct 552 ILYADSITKSMKKAMDETERRREKQQAYNEKMGIQPQALKRNIKDIMELGDITKSRKQKV 611 Query 540 RENQR 544 + Sbjct 612 SKTVP 616 >sp|Q83S42|UVRB_SHIFL UvrABC system protein B OS=Shigella flexneri OX=623 GN=uvrB PE=3 SV=1 Length=673 Score = 84.8 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 34/194 (18%), Positives = 74/194 (38%), Gaps = 20/194 (10%) Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R ++ T T++ A L +L++ G + + ++ E+I+ Sbjct 446 NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + + A Sbjct 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI 551 Query 482 VATEGSR-ELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR 540 + + S + + + +Q + K+ D+ +A R Sbjct 552 LYGDRSTPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 Query 541 ENQRQQFPVEHVQL 554 R ++V + Sbjct 612 GKSRPIVEPDNVPM 625 >sp|Q0T6I1|UVRB_SHIF8 UvrABC system protein B OS=Shigella flexneri serotype 5b (strain 8401) OX=373384 GN=uvrB PE=3 SV=1 Length=673 Score = 84.8 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 34/194 (18%), Positives = 74/194 (38%), Gaps = 20/194 (10%) Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R ++ T T++ A L +L++ G + + ++ E+I+ Sbjct 446 NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + + A Sbjct 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI 551 Query 482 VATEGSR-ELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR 540 + + S + + + +Q + K+ D+ +A R Sbjct 552 LYGDRSTPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 Query 541 ENQRQQFPVEHVQL 554 R ++V + Sbjct 612 GKSRPIVEPDNVPM 625 >sp|Q4P6N0|HAS1_USTMA ATP-dependent RNA helicase HAS1 OS=Ustilago maydis (strain 521 / FGSC 9021) OX=237631 GN=HAS1 PE=3 SV=2 Length=574 Score = 84.5 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 87/236 (37%), Gaps = 19/236 (8%) Query 264 KLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTK-TQILC 322 KL + L R+ HL+ + + +D + + + + + +IL Sbjct 168 KLQKGVNLIVATPGRLLD-HLQNTKGFVFSNLKALCIDEADRILEIGFEDEMRQIVKILP 226 Query 323 AERRLLALFDD----RKNELAHLA-THGPENPKL------EMLEKILQRQFSSSNSPR-G 370 + R LF + +LA ++ GP + + ++ Q + R Sbjct 227 NDNRQSMLFSATQTTKVQDLARISLRPGPLYINVHADLAASTVSRLEQGYVVCESDRRFL 286 Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 ++FT +++A ++ +V + LL H Q+ Q+ F+ Sbjct 287 LLFTFLKKNAGKKIIVFMS--SCNSVKYHSDLLNFIDVPVLDLHGKQKQQKRTNTFFEYC 344 Query 431 TLNL--LVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVA 483 L+ T VA GLDIP + ++++ + + GR ARA S + + Sbjct 345 NAPCGTLLCTDVAARGLDIPSVDWIIQFDPPDDPRDYIHRVGRTARAGNSGKSLLF 400 Score = 52.1 bits (123), Expect = 1e-05, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 48/135 (36%), Gaps = 9/135 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTR---AAAYVAKRHLETVD--GAKVVVLVNRVHLVT 61 Q I P + GK+++ TG+GKT A L+ G +++ L Sbjct 77 QARCIPPLMAGKDVLGAAQTGSGKTLSFLIPAIEMLHRLKFKPRNGTGAIIISPTRELAL 136 Query 62 QHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 Q + ++ + G RA L + +L++ T L L + + V Sbjct 137 QIFGVAKELMAHHHQTFGIIMGGANRRAEADKLQKGVNLIVATPGRLLDHLQNTK--GFV 194 Query 121 ELTVFSLIVVDECHH 135 + + +DE Sbjct 195 -FSNLKALCIDEADR 208 >sp|Q9CXF7|CHD1L_MOUSE Chromodomain-helicase-DNA-binding protein 1-like OS=Mus musculus OX=10090 GN=Chd1l PE=1 SV=1 Length=900 Score = 84.8 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 95/570 (17%), Positives = 180/570 (32%), Gaps = 86/570 (15%) Query 1 MELRSYQWEVIM---PALEGKNIIIWLP-TGAGKT-RAAAYVAKRHLETVDGAKVVVLVN 55 + LRSYQ E + +N I G GKT + A + D +VL Sbjct 38 IRLRSYQLEGVNWLVQCFHCQNGCILGDEMGLGKTCQTIALLIYLVGRLNDEGPFLVLCP 97 Query 56 RVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARC---HDLLICTAELLQMALT 112 L + EE R G VT +GD RA R +L+ T E+ Sbjct 98 LSVL-SNWKEEMERFAPGLSCVT-YTGDKEERARLQQDLRQESGFHVLLTTYEICLKD-- 153 Query 113 SPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGT 172 ++ +S++ VDE H S L L + ++L LT +P Sbjct 154 ----ASFLKSFSWSVLAVDEAHRLKNQ-------SSLLHRTLSEFSAVFRLL-LTGTPI- 200 Query 173 GGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDL 232 + L + + + +L C Q+++ Q+ + Sbjct 201 --QNSLRELYSLLCVVEPDL---------FCREQVEDFVQR------YQDIEKESKSASE 243 Query 233 LKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALL 292 L +L+ P L R+ Q+ + K Q+ Y + + Sbjct 244 LHRLLQ--------PFLLRRVKAQVATELPKKTEVVVYHGMSALQKKYYKAILMKDLDAF 295 Query 293 IHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLE 352 ++T + V L T+ + L + E+ + KL Sbjct 296 ENETAKKVKLQNIL---------TQLRKCVDHPYLFDGVEPEPFEVGEHLIEA--SGKLH 344 Query 353 MLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQS 412 +L+++L +S + R ++F++ L ++ G Sbjct 345 LLDRLLAFLYSGGH--RVLLFSQMTHMLDILQDYMD--------------YRGYSYERVD 388 Query 413 THMTQRDQQEVIQKFQDGTLNL---LVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + ++ I+ F G + L++T G+++ + V+ N + +QA Sbjct 389 GSVRGEERHLAIKNF--GNQPIFVFLLSTRAGGVGMNLTAADTVIFVDSDFNPQNDLQAA 446 Query 470 GRA-RADQSVYAFVATEGSRELKRELINEALET---LMEQAVAAVQKMDQAEYQAKIRDL 525 RA R Q+ V R+ E++ + L + A+ + D Sbjct 447 ARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMVIEGGHFTPGAQKPSAEADF 506 Query 526 QQAALTKRAAQAAQRENQRQQFPVEHVQLL 555 Q + + K ++ +L Sbjct 507 QLSEILKFGLDKLLSSEGSSMEDIDLKSIL 536 >sp|A5DEZ5|MS116_PICGU ATP-dependent RNA helicase MSS116, mitochondrial OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=MSS116 PE=3 SV=2 Length=714 Score = 84.8 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 46/329 (14%), Positives = 96/329 (29%), Gaps = 19/329 (6%) Query 185 VLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLM----DQI 240 V+ +L + + + + L R D ++ ++ Sbjct 153 VVAPTRDLALQIEAEFKKVLQHQTRNVHRKTDTFVLIGGRKNDLHPKAKAAIVIATPGRL 212 Query 241 HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV 300 L P + F Y V ++ G R A + Sbjct 213 EAILRDPRMLPMFSDLKYR--VYDEADRLLDQGFAPTLEVIEERLRDAKAEALEPDNHFK 270 Query 301 DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG----PENPK--LEML 354 AL + + I + + D+ E +H H ++ K E Sbjct 271 TALFSATVDDAVTNFAHETIGKEYEYINCV--DKDAEESHENIHQGIVRTQSIKDSFEAS 328 Query 355 EKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQ-TVDIRAQLLIGAGNSSQST 413 + + + I+F T LQ+ + + A G+ Sbjct 329 FSYILNHIND-KYFKAIVFLPTITGTEYYYRVLQRAKREELYDSETATKKYGSRILRLHG 387 Query 414 HMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARG--- 470 M+Q + +++F+ + +LV T VA GLD + V++ ++ + G Sbjct 388 KMSQSARDRTVKEFRRTSHGVLVCTDVAARGLDFNDVSHVIQMCPSSSVADYIHKIGRTA 447 Query 471 RARADQSVYAFVATEGSRELKRELINEAL 499 RA A F++ + ++ + Sbjct 448 RAGARGKARIFISEPEMKFIETLQRERGI 476 Score = 49.0 bits (115), Expect = 1e-04, Method: Composition-based stats. Identities = 49/313 (16%), Positives = 91/313 (29%), Gaps = 28/313 (9%) Query 7 QWEVIMPALEGKNIIIW-LPTGAGKTRA-AAYVAKRHLET---VDGAKV--VVLVNRVHL 59 Q IMP ++ K ++ TG GKT A A + LE ++ +V+ L Sbjct 101 QQRAIMPMMDTKTGVVVRAKTGTGKTLAFALPCIQAALENPQQTQKGRIQALVVAPTRDL 160 Query 60 VTQHGEEFRRMLDGRWTVTTLSGDM----GPRAGFGHLARCHDLLICTAELLQMALTSPE 115 Q EF+++L + D G R H ++I T L+ L P Sbjct 161 ALQIEAEFKKVLQHQTRNVHRKTDTFVLIGGRKNDLHPKAKAAIVIATPGRLEAILRDPR 220 Query 116 EEEHVELTVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRA---QPLPQVLGLTASP 170 + V DE ++ + L A + +A+ Sbjct 221 MLPMF--SDLKYRVYDEADRLLDQGFAPTLEVIEERLRDAKAEALEPDNHFKTALFSATV 278 Query 171 GTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFG 230 + I + +D + E+ Q + + F Sbjct 279 DDAVTNFAHETIGKEYEYINCVD--------KDAEESHENIHQGIVRTQSIKDSFEASFS 330 Query 231 DLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDA 290 +L + D+ + GT+ Y + + + + Y + R + Sbjct 331 YILNHINDKYFKAIVFLPTIT--GTEYYYRVLQRAKREELYDSETATKKYGSRILRLHGK 388 Query 291 LLIHDTVRAVDAL 303 + R V Sbjct 389 MSQSARDRTVKEF 401 >sp|B5YJW4|UVRB_THEYD UvrABC system protein B OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) OX=289376 GN=uvrB PE=3 SV=1 Length=671 Score = 84.5 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 37/202 (18%), Positives = 81/202 (40%), Gaps = 27/202 (13%) Query 345 GPENPKLEM------LEKILQR-QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD 397 G +PK+E+ +E +L+ S R ++ T T++ A L + Sbjct 421 GLVDPKIEVRPATNQVEDLLEEIHKRVSRGERVLVTTITKKMAEDLTDYYTT-------- 472 Query 398 IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG 457 +G + + ++ E+++ + G ++L+ ++ EGLD+P ++V + Sbjct 473 ------VGIKAKYLHSDIDTLERVEILKDLRLGKFDVLIGVNLLREGLDLPEVSLVAIFD 526 Query 458 -----LLTNEISMVQARGRA-RADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQ 511 L +E S++Q GRA R F A + +K+ + ++ Sbjct 527 ADKEGFLRSERSLIQTAGRASRNINGTVIFYADTVTDSMKKAIEETERRREIQMKYNKKN 586 Query 512 KMDQAEYQAKIRDLQQAALTKR 533 + ++KI+D+ + K Sbjct 587 GISPETVKSKIKDILSSIYEKD 608 >sp|Q87MX6|UVRB_VIBPA UvrABC system protein B OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) OX=223926 GN=uvrB PE=3 SV=1 Length=676 Score = 84.5 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 77/183 (42%), Gaps = 20/183 (11%) Query 363 SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE 422 ++ R ++ T T++ A L +L + D+R + L + + ++ E Sbjct 443 RAAKEERVLVTTLTKRMAEDLTEYLHEH------DVRVRYL--------HSDIDTVERVE 488 Query 423 VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQS 477 +I+ + G ++LV ++ EGLD+P ++V L +E S++Q GRA + Sbjct 489 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNIE 548 Query 478 VYAFVATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQ 536 A + + ++ +K+ + +QA + + I+D+ + ++ + Sbjct 549 GKAILYADNITKSMKKAMDETNRRREKQQAYNEKMGITPQALKRNIKDIMELGDITKSKR 608 Query 537 AAQ 539 Sbjct 609 QRN 611 >sp|Q6FIL3|HAS1_CANGA ATP-dependent RNA helicase HAS1 OS=Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=HAS1 PE=3 SV=1 Length=494 Score = 84.1 bits (206), Expect = 1e-15, Method: Composition-based stats. Identities = 27/170 (16%), Positives = 54/170 (32%), Gaps = 17/170 (10%) Query 357 ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT 416 +L + + I+F + S L +D+ L G Sbjct 266 LLFSFLKRNQKKKIIVFLSSCNSVKYYAELL------NYIDLPVLELHG--------KQK 311 Query 417 QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR-- 473 Q+ + +F + +L+ T VA GLDIP + ++++ + + GR AR Sbjct 312 QQKRTNTFFEFCNAERGILICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGT 371 Query 474 ADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIR 523 + R L + + Q++ + I+ Sbjct 372 NGKGKSLMFLIPNELGFLRYLKAAKVPLNEYEFPTNKIANVQSQLEKLIK 421 Score = 56.7 bits (135), Expect = 4e-07, Method: Composition-based stats. Identities = 28/136 (21%), Positives = 50/136 (37%), Gaps = 11/136 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYV----AKRHLETVD--GAKVVVLVNRVHLV 60 Q I P + G++++ TG+GKT A + L+ G V+++ L Sbjct 56 QARTIPPLMAGRDVLGAAKTGSGKTL-AFLLPTIELLHSLKFKPRNGTGVIIITPTRELA 114 Query 61 TQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 Q R +++ + G R L + +LL+ T L L + + Sbjct 115 LQIFGVVRELMEFHSQTFGIVIGGANRRQEAEKLMKGVNLLVATPGRLLDHLQNTKGFIF 174 Query 120 VELTVFSLIVVDECHH 135 L +V+DE Sbjct 175 KNLKA---LVIDEADR 187 >sp|B2TQS8|UVRB_CLOBB UvrABC system protein B OS=Clostridium botulinum (strain Eklund 17B / Type B) OX=935198 GN=uvrB PE=3 SV=1 Length=657 Score = 84.5 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 41/258 (16%), Positives = 89/258 (34%), Gaps = 22/258 (9%) Query 304 AALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFS 363 + L + + L P +++ L +Q S Sbjct 383 KKINQVMFVSATPAQYELEHSQSIAEQVIRPTGLLDPEIIIKPVKGQIDDLYTEIQETIS 442 Query 364 SSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEV 423 R +I T T++ A L ++ + +G + + + ++ ++ Sbjct 443 R--GYRILITTLTKRMAEDLTKYMIE--------------LGVKATYMHSDIDTIERMKI 486 Query 424 IQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGR-ARADQS 477 I+ + G ++LV ++ EGLDIP +V L +E S++Q GR AR +S Sbjct 487 IRDLRLGEYDVLVGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGRAARNSES 546 Query 478 VYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQA 537 A ++ +K+ + ++ + ++R+L +A + Sbjct 547 KVIMYADNITKSMKKAISETERRRKIQTEYNEEHGIIPQTINKEVRELIEATKVAEESTE 606 Query 538 AQRENQRQQFPVEHVQLL 555 E + E +L+ Sbjct 607 YGMEVTKSLTKKEAKKLI 624 >sp|Q5X0E6|UVRB_LEGPL UvrABC system protein B OS=Legionella pneumophila (strain Lens) OX=297245 GN=uvrB PE=3 SV=1 Length=663 Score = 84.5 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 35/187 (19%), Positives = 73/187 (39%), Gaps = 21/187 (11%) Query 365 SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI 424 + R ++ T T++ A L +L + G + + ++ E+I Sbjct 443 AQGSRILVTTLTKRMAEDLTEYLSE--------------HGIKVRYLHSDVDTVERMEII 488 Query 425 QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVY 479 + + G ++LV ++ EGLD+P +V L +E S++Q GRA + Sbjct 489 RDLRLGEFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTIGRAARNVKGR 548 Query 480 AFVATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD-LQQAALTKRAAQA 537 A + + + ++R L ++A + + D L+ A + KR Sbjct 549 AILYADNITGSMQRALTETERRREKQKAFNLKHGITPKGINKSVEDILEGAYIGKRKTMV 608 Query 538 AQRENQR 544 A++ + Sbjct 609 AEQAPRY 615 Score = 37.9 bits (86), Expect = 0.32, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 23/63 (37%), Gaps = 7/63 (11%) Query 11 IMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRM 70 + L + ++ TG+GKT A+V + +++ L Q EF+ Sbjct 28 LESGLAKQTLLGV--TGSGKTFTIAHVIQAM-----KRPTLIMAPNKTLAAQLYGEFKAF 80 Query 71 LDG 73 Sbjct 81 FPD 83 >sp|Q9JJY4|DDX20_MOUSE Probable ATP-dependent RNA helicase DDX20 OS=Mus musculus OX=10090 GN=Ddx20 PE=1 SV=2 Length=825 Score = 84.8 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 25/143 (17%), Positives = 51/143 (36%), Gaps = 14/143 (10%) Query 335 KNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQ 394 K + ++ + E + LQ FS + ++F+ A L L + Sbjct 278 KQYYQVVNSYPLAHKIFEEKTQHLQELFSKVPFNQALVFSNLHSRAQHLADILSSK---- 333 Query 395 TVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV 454 G S +M Q + + + K + +L++T + G+D N+VV Sbjct 334 ----------GFPTECISGNMNQNQRLDAMAKLKQFHCRVLISTDLTSRGIDAEKVNLVV 383 Query 455 RYGLLTNEISMVQARGRARADQS 477 + + + + GRA + Sbjct 384 NLDVPLDWETYMHRIGRAGRFGT 406 Score = 43.6 bits (101), Expect = 0.007, Method: Composition-based stats. Identities = 17/129 (13%), Positives = 46/129 (36%), Gaps = 6/129 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVD-GAKVVVLVNRVHLVTQHGE 65 Q + I G ++I+ +G GKT + +A L + ++++L + Q Sbjct 90 QLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLILENYSTQILILAPTREIAVQIHS 149 Query 66 EFRRMLDGRWTVT-TLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 + + + P + + + + + ++ + E +++ Sbjct 150 VITAIGIKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLI----ELDYLNPGS 205 Query 125 FSLIVVDEC 133 L ++DE Sbjct 206 IRLFILDEA 214 >sp|O13622|MS116_SCHPO ATP-dependent RNA helicase mss116, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mss116 PE=3 SV=1 Length=535 Score = 84.1 bits (206), Expect = 1e-15, Method: Composition-based stats. Identities = 29/155 (19%), Positives = 58/155 (37%), Gaps = 20/155 (13%) Query 365 SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI 424 + S R I+F T + L+ + + + +T ++ + Sbjct 290 NPSSRIIVFLPTISMVDFVGGVLENHLKIPCFILH-------------SGLTTAQRRSIT 336 Query 425 QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSV--YAF 481 + F+ +L AT V G+D P+ VV+ +N + GR RA ++ Y Sbjct 337 ESFRKCQSGILFATDVVARGMDFPNITQVVQITGPSNTDDYIHRIGRTGRAGKTGEAYLI 396 Query 482 VATEGSRELKR----ELINEALETLMEQAVAAVQK 512 + + L L +E L +QA++ ++ Sbjct 397 LLEQEKPFLNSIKHLPLKRATIEPLSDQALSTLRS 431 Score = 49.8 bits (117), Expect = 7e-05, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 48/127 (38%), Gaps = 13/127 (10%) Query 18 KNIIIWLPTGAGKTRAAAYVA--KRHLETVDG---AKV--VVLVNRVHLVTQHGEEFRR- 69 +N ++ TG GKT A + K L+ +K+ V+L L Q EE R+ Sbjct 77 ENAVVQAKTGTGKTL-AFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKL 135 Query 70 -MLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLI 128 G + G+ R +LLI T L+ L +P E + F Sbjct 136 TYGTGIRVSYAIGGNSKMREENAIRRGNANLLIATPGRLEDHLQNPRILESLSTDSF--- 192 Query 129 VVDECHH 135 ++DE Sbjct 193 ILDEADR 199 >sp|Q2JRR3|UVRB_SYNJA UvrABC system protein B OS=Synechococcus sp. (strain JA-3-3Ab) OX=321327 GN=uvrB PE=3 SV=1 Length=695 Score = 84.5 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 58/123 (47%), Gaps = 19/123 (15%) Query 368 PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF 427 R I+ T T++ A L +LQ++ IR + L + ++ ++ E++Q F Sbjct 471 ERVIVTTLTKRMAEDLTEYLQER------GIRVRYL--------HSEISSIERIEILQDF 516 Query 428 QDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAFV 482 ++G ++LV ++ EGLD+P ++V L E S++Q GRA + + Sbjct 517 REGAFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQMIGRAARNVRGTVVM 576 Query 483 ATE 485 + Sbjct 577 YAD 579 >sp|C5BEJ2|UVRB_EDWI9 UvrABC system protein B OS=Edwardsiella ictaluri (strain 93-146) OX=634503 GN=uvrB PE=3 SV=1 Length=672 Score = 84.5 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 42/244 (17%), Positives = 89/244 (36%), Gaps = 26/244 (11%) Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 R ++ T T++ A L +L++ G + + ++ E+I+ Sbjct 446 GERVLVTTLTKRMAEDLTEYLEE--------------HGVRVRYLHSDIDTVERMEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G + LV ++ EGLD+P ++V L +E S++Q GRA + + A Sbjct 492 LRLGEFDALVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAI 551 Query 482 VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR 540 + + + + R + +QA + K+ D+ Q ++ Sbjct 552 LYADKITPSMARAIGETERRRERQQAFNLAHGITPQALNKKVTDILQLGDGPVRSRTKGA 611 Query 541 ENQRQQFPVEHVQLLCINCMVAVGHGSDLRKVEG-THHVNVNPNFSNYYNVSRDPVVINK 599 QR P L A ++++E + N F + + ++ + Sbjct 612 RGQRAAEPHPDYHTL-----SAKQIEQQIQRLETQMYQHAQNLEFEQAAALRDEIHILRE 666 Query 600 VFKD 603 FK+ Sbjct 667 QFKN 670 >sp|A5I9P3|UVRB_LEGPC UvrABC system protein B OS=Legionella pneumophila (strain Corby) OX=400673 GN=uvrB PE=3 SV=1 Length=663 Score = 84.5 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 35/187 (19%), Positives = 74/187 (40%), Gaps = 21/187 (11%) Query 365 SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI 424 + R ++ T T++ A L +L + G + + ++ E+I Sbjct 443 AQGSRILVTTLTKRMAEDLTEYLSE--------------HGIKVRYLHSDVDTVERMEII 488 Query 425 QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVY 479 + + G ++LV ++ EGLD+P +V L +E S++Q GRA + Sbjct 489 RDLRLGEFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTIGRAARNVKGR 548 Query 480 AFVATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD-LQQAALTKRAAQA 537 A + + + ++R L+ ++A + + D L+ A + KR Sbjct 549 AILYADTMTGSMQRALMETERRREKQKAFNLKHGITPKGINKSVEDILEGAYIGKRKTMV 608 Query 538 AQRENQR 544 A++ + Sbjct 609 AEQAPRY 615 Score = 38.2 bits (87), Expect = 0.31, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 23/63 (37%), Gaps = 7/63 (11%) Query 11 IMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRM 70 + L + ++ TG+GKT A+V + +++ L Q EF+ Sbjct 28 LESGLAKQTLLGV--TGSGKTFTIAHVIQAM-----KRPTLIMAPNKTLAAQLYGEFKAF 80 Query 71 LDG 73 Sbjct 81 FPD 83 >sp|Q5ZBH5|RH25_ORYSJ DEAD-box ATP-dependent RNA helicase 25 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0618400 PE=2 SV=1 Length=594 Score = 84.1 bits (206), Expect = 1e-15, Method: Composition-based stats. Identities = 24/146 (16%), Positives = 57/146 (39%), Gaps = 14/146 (10%) Query 332 DDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQ 391 ++ +++ + P + +L +L++ + + IIF T L+ + Q Sbjct 349 EETHAQVSQMFMIAPLDLHFSILYDVLKKHVAEDADYKVIIFC-TTAMVTKLVAEILSQL 407 Query 392 GLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN 451 L +I + +Q + +V +F+ +LV++ V+ G+D P Sbjct 408 RLNIREIH-------------SRKSQSARTKVSDEFRKSRGLILVSSDVSARGVDYPDVT 454 Query 452 VVVRYGLLTNEISMVQARGRARADQS 477 +V++ G+ + + GR Sbjct 455 LVIQVGVPADRQQYIHRLGRTGRKGK 480 Score = 48.3 bits (113), Expect = 2e-04, Method: Composition-based stats. Identities = 25/134 (19%), Positives = 51/134 (38%), Gaps = 15/134 (11%) Query 15 LEGKNIIIWLPTGAGKTRAAAYV-AKRHLETVDGAK---------VVVLVNRVHLVTQHG 64 L+GK+++ TG GKT A + A L + ++ ++V+ L Q Sbjct 161 LQGKDVLAKAKTGTGKT-VAFLLPAIEVLSALPNSRRDQLRPSINLLVMCPTRELAIQVA 219 Query 65 EEFRRMLDGRWTVT---TLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVE 121 E +++L ++ + G + A +L+ T L+ + + Sbjct 220 VEAKKLLKYHRSLGVQVVIGGTRLTQEQRSMQANPCQILVATPGRLKDHVENTPGFS-TR 278 Query 122 LTVFSLIVVDECHH 135 L ++V+DE Sbjct 279 LKGVKVLVLDEADR 292 >sp|B4ESU7|UVRB_PROMH UvrABC system protein B OS=Proteus mirabilis (strain HI4320) OX=529507 GN=uvrB PE=3 SV=1 Length=669 Score = 84.5 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 36/238 (15%), Positives = 86/238 (36%), Gaps = 22/238 (9%) Query 307 QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSN 366 Q Y K ++ + ++ L + P +++ L ++ ++ Sbjct 388 QTIYVSATPGKYELEKSGNDIVEQVVRPTGLLDPVVEVRPVATQVDDLLSEIR--IRAAK 445 Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R ++ T T++ A L +L++ G + + ++ E+I+ Sbjct 446 NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERVEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + A Sbjct 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLEGKAI 551 Query 482 VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA 538 + + + + + + +Q + KI D+ + + Sbjct 552 LYGDKITDSMAKAIGETERRREKQQQFNLEHGIVPKGLNKKIGDILKIGQPTQGRNKK 609 >sp|A8GBD1|UVRB_SERP5 UvrABC system protein B OS=Serratia proteamaculans (strain 568) OX=399741 GN=uvrB PE=3 SV=1 Length=670 Score = 84.5 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 39/227 (17%), Positives = 88/227 (39%), Gaps = 22/227 (10%) Query 307 QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSN 366 Q Y K ++ + ++ L L P +++ L ++++ + + Sbjct 388 QTIYVSATPGKYELEKSGDDIIDQVVRPTGLLDPLIEVRPVTTQVDDLLSEIRKRVAINE 447 Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 R ++ T T++ A L +L++ G + + ++ E+I+ Sbjct 448 --RVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERVEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + + A Sbjct 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAI 551 Query 482 VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQ 527 + + + + R + +QA + K+ D+ Q Sbjct 552 LYGDRITDSMARAISETERRRAKQQAFNEENGIVPQGLNKKVSDVLQ 598 >sp|Q2JN87|UVRB_SYNJB UvrABC system protein B OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) OX=321332 GN=uvrB PE=3 SV=1 Length=695 Score = 84.5 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 31/126 (25%), Positives = 59/126 (47%), Gaps = 19/126 (15%) Query 365 SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI 424 + R I+ T T++ A L +LQ++ IR + L + +T ++ E++ Sbjct 468 GPAERVIVTTLTKRMAEDLTEYLQER------GIRVRYL--------HSEITSIERIEIL 513 Query 425 QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVY 479 Q F++G ++LV ++ EGLD+P ++V L E S++Q GRA + Sbjct 514 QDFREGAFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQMIGRAARNVRGM 573 Query 480 AFVATE 485 + + Sbjct 574 VVMYAD 579 >sp|Q9VD51|DDX18_DROME Probable ATP-dependent RNA helicase pitchoune OS=Drosophila melanogaster OX=7227 GN=pit PE=2 SV=2 Length=680 Score = 84.5 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 76/232 (33%), Gaps = 44/232 (19%) Query 283 HLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDR-------- 334 HL+ D L + +D + + + E + + L +RR LF Sbjct 323 HLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLPKRRQTMLFSATQTARIEAL 382 Query 335 -----KNELAHLATHGPEN--------------PKLEMLEKILQRQFSSSNSPRGIIFTR 375 K+E ++ H ++ P + L +L + + ++F Sbjct 383 SKLALKSEPIYVGVHDNQDTATVDGLEQGYIVCPSEKRLL-VLFTFLKKNRKKKVMVFFS 441 Query 376 TRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLL 435 + S + +D+ + G Q + +F + +L Sbjct 442 SCMSVK------YHHELFNYIDLPVTSIHG--------KQKQTKRTTTFFQFCNAESGIL 487 Query 436 VATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA--RADQSVYAFVATE 485 + T VA GLDIP + +V+Y + + GR + S +A + Sbjct 488 LCTDVAARGLDIPQVDWIVQYDPPDDPREYIHRVGRTARGSGTSGHALLLMR 539 Score = 52.9 bits (125), Expect = 8e-06, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 53/137 (39%), Gaps = 9/137 (7%) Query 2 ELRSYQWEVIMPALEGKNIIIWLPTGAGKT---RAAAYVAKRHLETVD--GAKVVVLVNR 56 E+ Q + + P L+G++++ TG+GKT A L + G V+++ Sbjct 209 EMTEIQSKSLTPLLKGRDLVGAAQTGSGKTLAFLIPAVELINKLRFMPRNGTGVIIISPT 268 Query 57 VHLVTQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE 115 L Q + ++ + G + L + ++L+ T L L + Sbjct 269 RELSMQTFGVLKELMAHHHHTYGLVMGGSNRQVESEKLGKGINILVATPGRLLDHLQNSP 328 Query 116 EEEHVELTVFSLIVVDE 132 + + L +++DE Sbjct 329 DFLYKNLQ---CLIIDE 342 >sp|Q65ST2|UVRB_MANSM UvrABC system protein B OS=Mannheimia succiniciproducens (strain KCTC 0769BP / MBEL55E) OX=221988 GN=uvrB PE=3 SV=1 Length=678 Score = 84.1 bits (206), Expect = 1e-15, Method: Composition-based stats. Identities = 36/167 (22%), Positives = 71/167 (43%), Gaps = 24/167 (14%) Query 346 PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 P + +++ L ++ + + R ++ T T++ A L +L + IR + L Sbjct 432 PVSIQVDDLLSEARQ--RADRNERVLVTTLTKRMAEDLTDYLDEH------GIRVRYL-- 481 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLT 460 + + ++ E+I+ + G ++LV ++ EGLDIP ++V L Sbjct 482 ------HSDIDTVERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLR 535 Query 461 NEISMVQARGRARADQSVYAFVATE---GSRELKRELINEALETLME 504 +E S++Q GRA + A + + S E N E M+ Sbjct 536 SERSLIQTIGRAARNLKGKAILYADRITNSMEKAITETNRRREKQMK 582 >sp|Q6FKS8|SPB4_CANGA ATP-dependent rRNA helicase SPB4 OS=Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=SPB4 PE=3 SV=1 Length=617 Score = 84.1 bits (206), Expect = 1e-15, Method: Composition-based stats. Identities = 49/275 (18%), Positives = 101/275 (37%), Gaps = 30/275 (11%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSA---HSLLLWLQQQQGLQTVDIRAQLLIGA 406 KL+ L I+ + I++ T S + L +LQQ D++ + G Sbjct 249 KLQNLIHIMNNI----RFKKCIVYFSTCVSVTFFYQYLKYLQQTDKTLREDLQVISIHG- 303 Query 407 GNSSQSTHMTQRDQQEVIQKFQDGTLN-LLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465 +T + +++ + F + + +L+ T VA G+DIP ++V++ T+ Sbjct 304 -------KLTTQSRRKALSTFTESLSDCILLTTDVAARGIDIPDVDLVLQIDPPTDADIF 356 Query 466 VQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD 524 + GR RA++ A V RE E +E+ K+ + Sbjct 357 LHRCGRTGRANKIGRAIVFLNEGREEDYIPFMEVKNVDIEETDINKNKISNDNNDEFYQR 416 Query 525 LQQAALTKRAAQAAQRENQRQQFPVEHVQLLCINCMVAVGHGSDLRKVEGTHHVNVNPNF 584 + L+ RA + + + + + + +++ +V++ + Sbjct 417 FTKWLLSDRA-----------NYDLSVKSYVAFIRYYSKHSATSIFRLQSLDYVSLGKMY 465 Query 585 SNYYNVSRDPVVINKVFKDWKPGGVISCRNCGEVW 619 + + R P I K +D + G GE W Sbjct 466 -GLFRLPRMPE-ITKYLQDKEKSGETVVGYYGEGW 498 Score = 44.0 bits (102), Expect = 0.004, Method: Composition-based stats. Identities = 27/139 (19%), Positives = 49/139 (35%), Gaps = 24/139 (17%) Query 16 EGKNIIIWLPTGAGKTRAAAY---VAKRHLETVDGAKV-------VVLVNRVHLVTQHGE 65 + K++++ TG+GKT A + K E ++ +K ++L L Q Sbjct 43 KNKDVVVESVTGSGKT-IAFVIPILEKIISEGINNSKFKKGHFYSLILAPTRELSMQIQN 101 Query 66 EFRRML--------DGRWTVTTLSGDMGPRAGFGHLARCH-DLLICTAELLQMALTSPEE 116 L R + + + R L +LI T + L SP Sbjct 102 VVSSFLEHYPEDQYPIRSQLVVGTNEKSVRDDVNTLLDERPQILIGTPGRVLDFLQSPS- 160 Query 117 EEHVELTVFSLIVVDECHH 135 V+ + ++V+DE Sbjct 161 ---VKTSSCGMVVLDEADR 176 >sp|Q8G5L9|UVRB_BIFLO UvrABC system protein B OS=Bifidobacterium longum (strain NCC 2705) OX=206672 GN=uvrB PE=3 SV=1 Length=703 Score = 84.1 bits (206), Expect = 1e-15, Method: Composition-based stats. Identities = 28/146 (19%), Positives = 64/146 (44%), Gaps = 19/146 (13%) Query 365 SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI 424 + + R ++ T T++ A L +L ++ G + + + E++ Sbjct 449 AKNERALVTTLTKKMAEDLTDYLLER--------------GIKVEYLHSDVDTLRRVELL 494 Query 425 QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVY 479 + ++G ++++V ++ EGLD+P ++V L + S++Q GRA + S Sbjct 495 RMLREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTIGRAARNVSGT 554 Query 480 AFVATEGSRELKRELINEALETLMEQ 505 + + + E R+ I+E +Q Sbjct 555 VIMYADETTEAMRQAIDETDRRRAKQ 580 >sp|Q5KVB5|UVRB_GEOKA UvrABC system protein B OS=Geobacillus kaustophilus (strain HTA426) OX=235909 GN=uvrB PE=3 SV=1 Length=658 Score = 84.1 bits (206), Expect = 1e-15, Method: Composition-based stats. Identities = 30/178 (17%), Positives = 74/178 (42%), Gaps = 20/178 (11%) Query 365 SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI 424 + R ++ T T++ A L +L++ G + + + ++ E+I Sbjct 443 ERNERTLVTTLTKKMAEDLTDYLKEA--------------GIKVAYLHSEIKTLERIEII 488 Query 425 QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVY 479 + + G ++LV ++ EGLDIP ++V L +E S++Q GRA + + + Sbjct 489 RDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNANGH 548 Query 480 AFVATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQ 536 + + ++ ++ + +++ + + +IRD+ +A + Sbjct 549 VIMYADTITKSMEVAIQETKRRRAIQEEYNRKHGIVPRTVKKEIRDVIRATYAAEETE 606 >sp|P56981|UVRB_BACCA UvrABC system protein B OS=Bacillus caldotenax OX=1395 GN=uvrB PE=1 SV=2 Length=658 Score = 84.1 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 30/178 (17%), Positives = 74/178 (42%), Gaps = 20/178 (11%) Query 365 SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI 424 + R ++ T T++ A L +L++ G + + + ++ E+I Sbjct 443 ERNERTLVTTLTKKMAEDLTDYLKEA--------------GIKVAYLHSEIKTLERIEII 488 Query 425 QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVY 479 + + G ++LV ++ EGLDIP ++V L +E S++Q GRA + + + Sbjct 489 RDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNANGH 548 Query 480 AFVATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQ 536 + + ++ ++ + +++ + + +IRD+ +A + Sbjct 549 VIMYADTITKSMEIAIQETKRRRAIQEEYNRKHGIVPRTVKKEIRDVIRATYAAEETE 606 >sp|A1CIQ5|HAS1_ASPCL ATP-dependent RNA helicase has1 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=has1 PE=3 SV=1 Length=625 Score = 84.1 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 49/318 (15%), Positives = 101/318 (32%), Gaps = 47/318 (15%) Query 253 FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHR 312 G + KL + L R+ HL+ + + +D + + Sbjct 250 IGGANRRAEAEKLMKGVNLLIATPGRLLD-HLQNTQGFVFKNLKTLVIDEADRILEVGFE 308 Query 313 EHVTK-TQILCAERRLLALFDD----RKNELAHLAT----------HGPENPKLEMLEK- 356 + + + +IL +E R LF + +LA ++ H E+ +E LE+ Sbjct 309 DEMRQIVKILPSEERQTMLFSATQTTKVEDLARISLRPGPLYINVDHRKEHSTVEGLEQG 368 Query 357 -----------ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 +L + + I+F + + L +D+ L G Sbjct 369 YVICEADKRFLLLFSFLKRNLKKKIIVFFSSCNCVK------YHAELLNYIDLPVLELHG 422 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465 Q+ + +F + L+ T VA GLDIP + ++++ + Sbjct 423 --------KQKQQKRTNTFFEFCNAKQGTLICTDVAARGLDIPAVDWIIQFDPPDDPRDY 474 Query 466 VQARGRARAD---QSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKI 522 + GR + + L + + + A+ Q++ + I Sbjct 475 IHRVGRTARGANAKGRSLMFLQPSEVGFLKHLKEARVPVVEFEFPASKIVNVQSQLEKLI 534 Query 523 RDLQQAALTKRAAQAAQR 540 Q L K A + + Sbjct 535 G--QNYYLNKSAKEGYRS 550 Score = 51.0 bits (120), Expect = 3e-05, Method: Composition-based stats. Identities = 32/135 (24%), Positives = 45/135 (33%), Gaps = 9/135 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT---RAAAYVAKRHLETVDGAKVVVLV--NRVHLVT 61 Q I P L G++++ TG+GKT A L VLV L Sbjct 170 QRRTIPPLLAGRDVLGAAKTGSGKTLSFLIPAVEMLSALRFKPRNGTGVLVVSPTRELAL 229 Query 62 QHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 Q R + + G RA L + +LLI T L L + + Sbjct 230 QIFGVARELCQHHSQTYGIVIGGANRRAEAEKLMKGVNLLIATPGRLLDHLQNTQGFVFK 289 Query 121 ELTVFSLIVVDECHH 135 L +V+DE Sbjct 290 NLKT---LVIDEADR 301 >sp|Q65ED8|UVRB_BACLD UvrABC system protein B OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / CCUG 7422 / NBRC 12200 / NCIMB 9375 / NCTC 10341 / NRRL NRS-1264 / Gibson 46) OX=279010 GN=uvrB PE=3 SV=1 Length=661 Score = 84.1 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 49/288 (17%), Positives = 102/288 (35%), Gaps = 26/288 (9%) Query 289 DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPEN 348 + L + +R + + + + L ++ L + P Sbjct 369 PSALDNRPLRFEEFEKHIHNIVYVSATPGPYELEHTPEMVEQIIRPTGLLDPIIEVRPIE 428 Query 349 PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN 408 +++ L +Q++ + R ++ T T++ + L +L++ IG Sbjct 429 GQIDDLIGEIQQRIERNE--RVLVTTLTKKMSEDLTDYLKE--------------IGIKV 472 Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEI 463 + + + ++ E+I+ + G ++LV ++ EGLDIP ++V L +E Sbjct 473 TYLHSEIKTLERIEIIRDLRLGKHDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSER 532 Query 464 SMVQARGRARADQSVYAFVATEGSRELKRELINE-ALETLMEQAVAAVQKMDQAEYQAKI 522 S++Q GRA + + + INE ++A + KI Sbjct 533 SLIQTIGRAARNAEGRVIMYADKITNSMEIAINETKRRREQQEAYNEKHGITPKTINKKI 592 Query 523 RDLQQAALTKRAAQAAQRENQRQQFPVEHVQLLCINCMVAVGHGSDLR 570 RD + A Q E Q ++ P V SD++ Sbjct 593 RD----VIRATHAAEDQEEYQVKEEPKLSKMTKKEREKVIAQMESDMK 636 >sp|Q5E6B5|UVRB_ALIF1 UvrABC system protein B OS=Aliivibrio fischeri (strain ATCC 700601 / ES114) OX=312309 GN=uvrB PE=3 SV=1 Length=676 Score = 84.1 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 37/206 (18%), Positives = 78/206 (38%), Gaps = 21/206 (10%) Query 307 QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSN 366 Q Y K +I ++ + L + P +++ L ++ + N Sbjct 389 QTIYVSATPGKYEIEKSDGEIAEQVVRPTGLLDPVIEVRPVATQVDDLLSEIR--IRTKN 446 Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R ++ T T++ A L +L + G + + ++ E+I+ Sbjct 447 NERVLVTTLTKRMAEDLTEYLDE--------------HGVKVRYLHSDIDTVERVEIIRD 492 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + A Sbjct 493 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLEGKAI 552 Query 482 VATEGSRELKRELINEALETLMEQAV 507 + + + I E +Q + Sbjct 553 LYADKITGSMEKAIGETERRREKQQL 578 >sp|Q8ENJ5|UVRB_OCEIH UvrABC system protein B OS=Oceanobacillus iheyensis (strain DSM 14371 / CIP 107618 / JCM 11309 / KCTC 3954 / HTE831) OX=221109 GN=uvrB PE=3 SV=1 Length=660 Score = 84.1 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 34/194 (18%), Positives = 75/194 (39%), Gaps = 22/194 (11%) Query 365 SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI 424 + R +I T T++ + L +L++ IG + + + ++ EVI Sbjct 443 EKNERVLITTLTKKMSEDLTDYLKE--------------IGMKVAYLHSEIKTLERIEVI 488 Query 425 QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVY 479 + + G ++LV ++ EGLDIP ++V L +E S++Q GRA +++ Sbjct 489 RDLRVGKFDVLVGINLLREGLDIPEVSLVSILDADKEGFLRSERSLIQTMGRAARNENGK 548 Query 480 AFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQ 539 + + + ++ I+ ET + + IR + + A Sbjct 549 VIMYADKMTDSMKKAID---ETNRRRTIQTEYNEQHGITPKTIRKEVRDVIKATTAAEET 605 Query 540 RENQRQQFPVEHVQ 553 + + + + Sbjct 606 ESYEPKTKQINKMT 619 >sp|Q6FML5|PRP5_CANGA Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=PRP5 PE=3 SV=1 Length=816 Score = 84.1 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 29/187 (16%), Positives = 64/187 (34%), Gaps = 15/187 (8%) Query 339 AHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI 398 E+ K + L +L+ S + + IIF ++Q + L Sbjct 476 QKFTICSDESDKFKELLSLLKVFNSETVDEKTIIFVSSQQICDIIEKRLTDYSEKLY--- 532 Query 399 RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL 458 S ++++ ++ F+ + ++L+ T V GL++P + V+ Y Sbjct 533 -----------SIHAGRPYNERRQNLELFKKTSNSILLCTEVMSRGLNVPEVSRVILYNS 581 Query 459 LTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAE 517 V + GR AR + + + ++N+A+ + + + Sbjct 582 AKTFAQYVHSTGRTARGTREGTSISLLLPNELSSAYILNKAMRDKDFSECPVKEVKNLKQ 641 Query 518 YQAKIRD 524 K D Sbjct 642 MAQKFED 648 Score = 51.0 bits (120), Expect = 3e-05, Method: Composition-based stats. Identities = 27/137 (20%), Positives = 49/137 (36%), Gaps = 9/137 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK-------VVVLVNRVHL 59 Q + I + G+++I TG+GKT + RH++ + V+ L Sbjct 279 QTQTIPAIMSGRDVIGISKTGSGKTISYLLPMIRHVKAQKKLRNGETGPIAVIFAPTREL 338 Query 60 VTQHGEEFRR-MLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEE 118 Q EE ++ + D + +G + L ++ I T L+ Sbjct 339 AVQINEEVQKLISDLDISSICCTGGSDLKKQIDKLKTGVEIAIATPGRFIDLLSLNGGNL 398 Query 119 HVELTVFSLIVVDECHH 135 L S +V+DE Sbjct 399 VSTL-RISFVVMDEADR 414 >sp|P20448|DBP4_YEAST ATP-dependent RNA helicase HCA4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=HCA4 PE=1 SV=2 Length=770 Score = 84.1 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 30/171 (18%), Positives = 54/171 (32%), Gaps = 19/171 (11%) Query 333 DRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQG 392 L P KL++L ++ + I+F + + H + ++ Q Sbjct 261 STPETLQQFYIEVPLADKLDILFSFIKSHLK----CKMIVFLSSSKQVHFVYETFRKMQP 316 Query 393 LQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNV 452 G QR + E + KF L AT V G+D P + Sbjct 317 ------------GISLMHLHGRQKQRARTETLDKFNRAQQVCLFATDVVARGIDFPAVDW 364 Query 453 VVRYGLLTNEISMVQARGR-ARADQSVY--AFVATEGSRELKRELINEALE 500 VV+ + + + GR AR + + + + L +E Sbjct 365 VVQVDCPEDVDTYIHRVGRCARYGKKGKSLIMLTPQEQEAFLKRLNARKIE 415 Score = 57.9 bits (138), Expect = 2e-07, Method: Composition-based stats. Identities = 53/315 (17%), Positives = 100/315 (32%), Gaps = 35/315 (11%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAY------VAKRHLETVDGAKVVVLVNRVHLV 60 Q + I +L+G +++ TG+GKT A + + DG +++ L Sbjct 68 QADSIPVSLQGHDVLAAAKTGSGKTL-AFLVPVIEKLYREKWTEFDGLGALIISPTRELA 126 Query 61 TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 Q E ++ L ++LI T + L + Sbjct 127 MQIYEVLTKIGSHTSFSAGLVIGGKDVKFELERISRINILIGTPGRILQHLDQAVG---L 183 Query 121 ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG 180 + ++V+DE ++ + L+ + P Q L +A+ A Sbjct 184 NTSNLQMLVLDEADRCL-----DMGFKKTLDAIVSTLSPSRQTLLFSATQSQSVADL--- 235 Query 181 AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI 240 A L + +++ L + P D L L I Sbjct 236 ---------ARLSLTDYKTVGTHDVMDGSVNKEASTPETLQQFYIEVPLADKLDILFSFI 286 Query 241 HDHLEMPELSRKFGTQMYE---QQVVKLSEAAA---LAGLQEQRVYALHLRRYNDALLIH 294 HL+ + ++ + K+ + L G Q+QR L ++N A + Sbjct 287 KSHLKCKMIVFLSSSKQVHFVYETFRKMQPGISLMHLHGRQKQRARTETLDKFNRAQQV- 345 Query 295 DTVRAVDALAALQDF 309 + A D +A DF Sbjct 346 -CLFATDVVARGIDF 359 >sp|Q9UHI6|DDX20_HUMAN Probable ATP-dependent RNA helicase DDX20 OS=Homo sapiens OX=9606 GN=DDX20 PE=1 SV=2 Length=824 Score = 84.1 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 25/143 (17%), Positives = 51/143 (36%), Gaps = 14/143 (10%) Query 335 KNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQ 394 K + ++ + E + LQ FS + ++F+ A L L + Sbjct 277 KQYYKVVNSYPLAHKVFEEKTQHLQELFSRIPFNQALVFSNLHSRAQHLADILSSK---- 332 Query 395 TVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV 454 G S +M Q + + + K + +L++T + G+D N+VV Sbjct 333 ----------GFPAECISGNMNQNQRLDAMAKLKHFHCRVLISTDLTSRGIDAEKVNLVV 382 Query 455 RYGLLTNEISMVQARGRARADQS 477 + + + + GRA + Sbjct 383 NLDVPLDWETYMHRIGRAGRFGT 405 Score = 43.6 bits (101), Expect = 0.007, Method: Composition-based stats. Identities = 17/129 (13%), Positives = 46/129 (36%), Gaps = 6/129 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVD-GAKVVVLVNRVHLVTQHGE 65 Q + I G ++I+ +G GKT + +A L + ++++L + Q Sbjct 89 QLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHS 148 Query 66 EFRRMLDGRWTVT-TLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 + + + P + + + + + ++ + E +++ Sbjct 149 VITAIGIKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLI----ELDYLNPGS 204 Query 125 FSLIVVDEC 133 L ++DE Sbjct 205 IRLFILDEA 213 >sp|Q1EA54|HAS1_COCIM ATP-dependent RNA helicase HAS1 OS=Coccidioides immitis (strain RS) OX=246410 GN=HAS1 PE=3 SV=1 Length=604 Score = 83.7 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 42/260 (16%), Positives = 88/260 (34%), Gaps = 44/260 (17%) Query 253 FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHR 312 G + KL++ L R+ HL+ + + + +D + + Sbjct 231 IGGANRRAEAEKLTKGVNLLIATPGRLLD-HLQNTDGFVFKNLKALVIDEADRILEVGFE 289 Query 313 EHVTK-TQILCAERRLLALFDD----RKNELAHLAT----------HGPENPKLEMLEK- 356 + + + +IL +E R LF + +LA ++ H E+ +E LE+ Sbjct 290 DEMRQIVKILPSEDRQTMLFSATQTTKVEDLARISLRPGPLYINVDHRKEHSTVEGLEQG 349 Query 357 -----------ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 +L + + I+F + + L +D+ L G Sbjct 350 YVICDSDKRFLLLFSFLKRNLKKKIIVFFSSCNCVK------YHAELLNYIDLPVLDLHG 403 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465 Q+ + +F + L+ T VA GLDIP + ++++ + Sbjct 404 --------KQKQQKRTNTFFEFCNAKQGTLICTDVAARGLDIPAVDWIIQFDPPDDPRDY 455 Query 466 VQARGRA--RADQSVYAFVA 483 + GR A+ + + Sbjct 456 IHRVGRTARGANGKGRSLMF 475 Score = 51.3 bits (121), Expect = 2e-05, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 45/127 (35%), Gaps = 9/127 (7%) Query 15 LEGKNIIIWLPTGAGKTR---AAAYVAKRHLETVD--GAKVVVLVNRVHLVTQHGEEFRR 69 + G++++ TG+GKT A L G V+V+ L Q R Sbjct 159 MAGRDVLGAAKTGSGKTLSFLIPAVEMLSALRFKPRNGTGVIVVSPTRELALQIFGVARE 218 Query 70 MLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLI 128 ++ + G RA L + +LLI T L L + + L + Sbjct 219 LMAHHSQTYGIVIGGANRRAEAEKLTKGVNLLIATPGRLLDHLQNTDGFVFKNLKA---L 275 Query 129 VVDECHH 135 V+DE Sbjct 276 VIDEADR 282 >sp|Q0UG00|MS116_PHANO ATP-dependent RNA helicase MSS116, mitochondrial OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) OX=321614 GN=MSS116 PE=3 SV=1 Length=550 Score = 83.3 bits (204), Expect = 2e-15, Method: Composition-based stats. Identities = 28/128 (22%), Positives = 48/128 (38%), Gaps = 13/128 (10%) Query 357 ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT 416 I + + I+F T L + R L + M+ Sbjct 321 IQEEHKQDPTDFKAIVFGTTANGVGLLYDLYKH----ALPQFRVFEL--------HSRMS 368 Query 417 QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARAD 475 Q + +F++ T +L A+ V G+D P+ +VV+ GL ++ V GR ARA Sbjct 369 QPMRTRTTAQFKEATSGILFASDVVGRGMDFPNVGLVVQLGLPSSTEQYVHRVGRTARAG 428 Query 476 QSVYAFVA 483 + A + Sbjct 429 KDGRAVLV 436 >sp|A7TJ71|DBP4_VANPO ATP-dependent RNA helicase DBP4 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 GN=DBP4 PE=3 SV=1 Length=768 Score = 84.1 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 28/154 (18%), Positives = 53/154 (34%), Gaps = 19/154 (12%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 KL+ML ++ + I+F + + H + ++ Q G Sbjct 280 KLDMLYSFIKSHLK----SKMIVFLSSSKQVHFVYETFRKMQP------------GISLM 323 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 Q+ + E + KF L AT V G+D P + VV+ + + + Sbjct 324 HLHGRQKQKARTETLDKFNRAQHVCLFATDVVARGIDFPAIDWVVQVDCPEDVDTYIHRV 383 Query 470 GR-ARADQSVY--AFVATEGSRELKRELINEALE 500 GR AR + + + + L + +E Sbjct 384 GRCARYGKQGKSMIMLTPQEEEGFLKRLASRKIE 417 Score = 50.2 bits (118), Expect = 6e-05, Method: Composition-based stats. Identities = 23/141 (16%), Positives = 47/141 (33%), Gaps = 8/141 (6%) Query 1 MELRSYQWEVIMPALEGKNIIIWLPTGAGKT---RAAAY--VAKRHLETVDGAKVVVLVN 55 ++L Q + I +L+G +I+ TG+GKT + + DG +++ Sbjct 62 LKLTDIQRDSIPMSLKGYDILGAAKTGSGKTLAFLIPVLEKLYRERWTEFDGLGALIISP 121 Query 56 RVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE 115 L Q E ++ L ++LI T + + Sbjct 122 TRELAMQIYEVLLKIGTSTSFSAGLVIGGKDVKFEMERISKINILIGTPGRILQHMDQAI 181 Query 116 EEEHVELTVFSLIVVDECHHT 136 + + ++V+DE Sbjct 182 G---LNTSNLQMLVLDEADRC 199 >sp|Q32I48|UVRB_SHIDS UvrABC system protein B OS=Shigella dysenteriae serotype 1 (strain Sd197) OX=300267 GN=uvrB PE=3 SV=1 Length=673 Score = 83.7 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 74/194 (38%), Gaps = 20/194 (10%) Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R ++ T T++ A L +L++ G + + ++ E+I+ Sbjct 446 NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + + A Sbjct 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI 551 Query 482 VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR 540 + + + + + + +Q + K+ D+ +A R Sbjct 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 Query 541 ENQRQQFPVEHVQL 554 R ++V + Sbjct 612 GKSRPIVEPDNVPM 625 >sp|Q0TJR9|UVRB_ECOL5 UvrABC system protein B OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) OX=362663 GN=uvrB PE=3 SV=1 Length=673 Score = 83.7 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 74/194 (38%), Gaps = 20/194 (10%) Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R ++ T T++ A L +L++ G + + ++ E+I+ Sbjct 446 NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + + A Sbjct 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI 551 Query 482 VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR 540 + + + + + + +Q + K+ D+ +A R Sbjct 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 Query 541 ENQRQQFPVEHVQL 554 R ++V + Sbjct 612 GKSRPIVEPDNVPM 625 >sp|B7MQN2|UVRB_ECO81 UvrABC system protein B OS=Escherichia coli O81 (strain ED1a) OX=585397 GN=uvrB PE=3 SV=1 Length=673 Score = 83.7 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 74/194 (38%), Gaps = 20/194 (10%) Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R ++ T T++ A L +L++ G + + ++ E+I+ Sbjct 446 NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + + A Sbjct 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI 551 Query 482 VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR 540 + + + + + + +Q + K+ D+ +A R Sbjct 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 Query 541 ENQRQQFPVEHVQL 554 R ++V + Sbjct 612 GKSRPIVEPDNVPM 625 >sp|Q8FJP8|UVRB_ECOL6 UvrABC system protein B OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=uvrB PE=3 SV=3 Length=673 Score = 83.7 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 74/194 (38%), Gaps = 20/194 (10%) Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R ++ T T++ A L +L++ G + + ++ E+I+ Sbjct 446 NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + + A Sbjct 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI 551 Query 482 VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR 540 + + + + + + +Q + K+ D+ +A R Sbjct 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 Query 541 ENQRQQFPVEHVQL 554 R ++V + Sbjct 612 GKSRPIVEPDNVPM 625 >sp|B7NNK9|UVRB_ECO7I UvrABC system protein B OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) OX=585057 GN=uvrB PE=3 SV=1 Length=673 Score = 83.7 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 74/194 (38%), Gaps = 20/194 (10%) Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R ++ T T++ A L +L++ G + + ++ E+I+ Sbjct 446 NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + + A Sbjct 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI 551 Query 482 VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR 540 + + + + + + +Q + K+ D+ +A R Sbjct 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 Query 541 ENQRQQFPVEHVQL 554 R ++V + Sbjct 612 GKSRPIVEPDNVPM 625 >sp|Q3Z405|UVRB_SHISS UvrABC system protein B OS=Shigella sonnei (strain Ss046) OX=300269 GN=uvrB PE=3 SV=1 Length=673 Score = 83.7 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 74/194 (38%), Gaps = 20/194 (10%) Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R ++ T T++ A L +L++ G + + ++ E+I+ Sbjct 446 NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + + A Sbjct 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI 551 Query 482 VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR 540 + + + + + + +Q + K+ D+ +A R Sbjct 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 Query 541 ENQRQQFPVEHVQL 554 R ++V + Sbjct 612 GKSRPIVEPDNVPM 625 >sp|Q324B3|UVRB_SHIBS UvrABC system protein B OS=Shigella boydii serotype 4 (strain Sb227) OX=300268 GN=uvrB PE=3 SV=1 Length=673 Score = 83.7 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 74/194 (38%), Gaps = 20/194 (10%) Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R ++ T T++ A L +L++ G + + ++ E+I+ Sbjct 446 NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + + A Sbjct 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI 551 Query 482 VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR 540 + + + + + + +Q + K+ D+ +A R Sbjct 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 Query 541 ENQRQQFPVEHVQL 554 R ++V + Sbjct 612 GKSRPIVEPDNVPM 625 >sp|B2TVF1|UVRB_SHIB3 UvrABC system protein B OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) OX=344609 GN=uvrB PE=3 SV=1 Length=673 Score = 83.7 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 74/194 (38%), Gaps = 20/194 (10%) Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R ++ T T++ A L +L++ G + + ++ E+I+ Sbjct 446 NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + + A Sbjct 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI 551 Query 482 VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR 540 + + + + + + +Q + K+ D+ +A R Sbjct 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 Query 541 ENQRQQFPVEHVQL 554 R ++V + Sbjct 612 GKSRPIVEPDNVPM 625 >sp|Q1REF1|UVRB_ECOUT UvrABC system protein B OS=Escherichia coli (strain UTI89 / UPEC) OX=364106 GN=uvrB PE=3 SV=1 Length=673 Score = 83.7 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 74/194 (38%), Gaps = 20/194 (10%) Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R ++ T T++ A L +L++ G + + ++ E+I+ Sbjct 446 NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + + A Sbjct 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI 551 Query 482 VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR 540 + + + + + + +Q + K+ D+ +A R Sbjct 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 Query 541 ENQRQQFPVEHVQL 554 R ++V + Sbjct 612 GKSRPIVEPDNVPM 625 >sp|B1LM70|UVRB_ECOSM UvrABC system protein B OS=Escherichia coli (strain SMS-3-5 / SECEC) OX=439855 GN=uvrB PE=3 SV=1 Length=673 Score = 83.7 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 74/194 (38%), Gaps = 20/194 (10%) Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R ++ T T++ A L +L++ G + + ++ E+I+ Sbjct 446 NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + + A Sbjct 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI 551 Query 482 VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR 540 + + + + + + +Q + K+ D+ +A R Sbjct 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 Query 541 ENQRQQFPVEHVQL 554 R ++V + Sbjct 612 GKSRPIVEPDNVPM 625 >sp|B6I7T4|UVRB_ECOSE UvrABC system protein B OS=Escherichia coli (strain SE11) OX=409438 GN=uvrB PE=3 SV=1 Length=673 Score = 83.7 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 74/194 (38%), Gaps = 20/194 (10%) Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R ++ T T++ A L +L++ G + + ++ E+I+ Sbjct 446 NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + + A Sbjct 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI 551 Query 482 VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR 540 + + + + + + +Q + K+ D+ +A R Sbjct 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 Query 541 ENQRQQFPVEHVQL 554 R ++V + Sbjct 612 GKSRPIVEPDNVPM 625 >sp|B7NA78|UVRB_ECOLU UvrABC system protein B OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) OX=585056 GN=uvrB PE=3 SV=1 Length=673 Score = 83.7 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 74/194 (38%), Gaps = 20/194 (10%) Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R ++ T T++ A L +L++ G + + ++ E+I+ Sbjct 446 NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + + A Sbjct 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI 551 Query 482 VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR 540 + + + + + + +Q + K+ D+ +A R Sbjct 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 Query 541 ENQRQQFPVEHVQL 554 R ++V + Sbjct 612 GKSRPIVEPDNVPM 625 >sp|P0A8F8|UVRB_ECOLI UvrABC system protein B OS=Escherichia coli (strain K12) OX=83333 GN=uvrB PE=1 SV=2 Length=673 Score = 83.7 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 74/194 (38%), Gaps = 20/194 (10%) Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R ++ T T++ A L +L++ G + + ++ E+I+ Sbjct 446 NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + + A Sbjct 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI 551 Query 482 VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR 540 + + + + + + +Q + K+ D+ +A R Sbjct 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 Query 541 ENQRQQFPVEHVQL 554 R ++V + Sbjct 612 GKSRPIVEPDNVPM 625 >sp|B1IXI9|UVRB_ECOLC UvrABC system protein B OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks) OX=481805 GN=uvrB PE=3 SV=1 Length=673 Score = 83.7 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 74/194 (38%), Gaps = 20/194 (10%) Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R ++ T T++ A L +L++ G + + ++ E+I+ Sbjct 446 NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + + A Sbjct 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI 551 Query 482 VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR 540 + + + + + + +Q + K+ D+ +A R Sbjct 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 Query 541 ENQRQQFPVEHVQL 554 R ++V + Sbjct 612 GKSRPIVEPDNVPM 625 >sp|A1A921|UVRB_ECOK1 UvrABC system protein B OS=Escherichia coli O1:K1 / APEC OX=405955 GN=uvrB PE=3 SV=1 Length=673 Score = 83.7 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 74/194 (38%), Gaps = 20/194 (10%) Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R ++ T T++ A L +L++ G + + ++ E+I+ Sbjct 446 NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + + A Sbjct 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI 551 Query 482 VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR 540 + + + + + + +Q + K+ D+ +A R Sbjct 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 Query 541 ENQRQQFPVEHVQL 554 R ++V + Sbjct 612 GKSRPIVEPDNVPM 625 >sp|A7ZY35|UVRB_ECOHS UvrABC system protein B OS=Escherichia coli O9:H4 (strain HS) OX=331112 GN=uvrB PE=3 SV=1 Length=673 Score = 83.7 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 74/194 (38%), Gaps = 20/194 (10%) Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R ++ T T++ A L +L++ G + + ++ E+I+ Sbjct 446 NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + + A Sbjct 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI 551 Query 482 VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR 540 + + + + + + +Q + K+ D+ +A R Sbjct 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 Query 541 ENQRQQFPVEHVQL 554 R ++V + Sbjct 612 GKSRPIVEPDNVPM 625 >sp|B1X7A9|UVRB_ECODH UvrABC system protein B OS=Escherichia coli (strain K12 / DH10B) OX=316385 GN=uvrB PE=3 SV=1 Length=673 Score = 83.7 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 74/194 (38%), Gaps = 20/194 (10%) Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R ++ T T++ A L +L++ G + + ++ E+I+ Sbjct 446 NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + + A Sbjct 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI 551 Query 482 VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR 540 + + + + + + +Q + K+ D+ +A R Sbjct 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 Query 541 ENQRQQFPVEHVQL 554 R ++V + Sbjct 612 GKSRPIVEPDNVPM 625 >sp|C4ZXV1|UVRB_ECOBW UvrABC system protein B OS=Escherichia coli (strain K12 / MC4100 / BW2952) OX=595496 GN=uvrB PE=3 SV=1 Length=673 Score = 83.7 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 74/194 (38%), Gaps = 20/194 (10%) Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R ++ T T++ A L +L++ G + + ++ E+I+ Sbjct 446 NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + + A Sbjct 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI 551 Query 482 VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR 540 + + + + + + +Q + K+ D+ +A R Sbjct 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 Query 541 ENQRQQFPVEHVQL 554 R ++V + Sbjct 612 GKSRPIVEPDNVPM 625 >sp|B7M751|UVRB_ECO8A UvrABC system protein B OS=Escherichia coli O8 (strain IAI1) OX=585034 GN=uvrB PE=3 SV=1 Length=673 Score = 83.7 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 74/194 (38%), Gaps = 20/194 (10%) Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R ++ T T++ A L +L++ G + + ++ E+I+ Sbjct 446 NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + + A Sbjct 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI 551 Query 482 VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR 540 + + + + + + +Q + K+ D+ +A R Sbjct 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 Query 541 ENQRQQFPVEHVQL 554 R ++V + Sbjct 612 GKSRPIVEPDNVPM 625 >sp|B5YRL8|UVRB_ECO5E UvrABC system protein B OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) OX=444450 GN=uvrB PE=3 SV=1 Length=673 Score = 83.7 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 74/194 (38%), Gaps = 20/194 (10%) Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R ++ T T++ A L +L++ G + + ++ E+I+ Sbjct 446 NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + + A Sbjct 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI 551 Query 482 VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR 540 + + + + + + +Q + K+ D+ +A R Sbjct 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 Query 541 ENQRQQFPVEHVQL 554 R ++V + Sbjct 612 GKSRPIVEPDNVPM 625 >sp|P0A8F9|UVRB_ECO57 UvrABC system protein B OS=Escherichia coli O157:H7 OX=83334 GN=uvrB PE=3 SV=2 Length=673 Score = 83.7 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 74/194 (38%), Gaps = 20/194 (10%) Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R ++ T T++ A L +L++ G + + ++ E+I+ Sbjct 446 NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + + A Sbjct 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI 551 Query 482 VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR 540 + + + + + + +Q + K+ D+ +A R Sbjct 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 Query 541 ENQRQQFPVEHVQL 554 R ++V + Sbjct 612 GKSRPIVEPDNVPM 625 >sp|B7LC61|UVRB_ECO55 UvrABC system protein B OS=Escherichia coli (strain 55989 / EAEC) OX=585055 GN=uvrB PE=3 SV=1 Length=673 Score = 83.7 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 74/194 (38%), Gaps = 20/194 (10%) Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R ++ T T++ A L +L++ G + + ++ E+I+ Sbjct 446 NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + + A Sbjct 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI 551 Query 482 VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR 540 + + + + + + +Q + K+ D+ +A R Sbjct 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 Query 541 ENQRQQFPVEHVQL 554 R ++V + Sbjct 612 GKSRPIVEPDNVPM 625 >sp|B7MGN7|UVRB_ECO45 UvrABC system protein B OS=Escherichia coli O45:K1 (strain S88 / ExPEC) OX=585035 GN=uvrB PE=3 SV=1 Length=673 Score = 83.7 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 74/194 (38%), Gaps = 20/194 (10%) Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R ++ T T++ A L +L++ G + + ++ E+I+ Sbjct 446 NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + + A Sbjct 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI 551 Query 482 VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR 540 + + + + + + +Q + K+ D+ +A R Sbjct 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 Query 541 ENQRQQFPVEHVQL 554 R ++V + Sbjct 612 GKSRPIVEPDNVPM 625 >sp|B7ULX6|UVRB_ECO27 UvrABC system protein B OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) OX=574521 GN=uvrB PE=3 SV=1 Length=673 Score = 83.7 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 74/194 (38%), Gaps = 20/194 (10%) Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R ++ T T++ A L +L++ G + + ++ E+I+ Sbjct 446 NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + + A Sbjct 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI 551 Query 482 VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR 540 + + + + + + +Q + K+ D+ +A R Sbjct 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 Query 541 ENQRQQFPVEHVQL 554 R ++V + Sbjct 612 GKSRPIVEPDNVPM 625 >sp|A7ZJI8|UVRB_ECO24 UvrABC system protein B OS=Escherichia coli O139:H28 (strain E24377A / ETEC) OX=331111 GN=uvrB PE=3 SV=1 Length=673 Score = 83.7 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 74/194 (38%), Gaps = 20/194 (10%) Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R ++ T T++ A L +L++ G + + ++ E+I+ Sbjct 446 NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + + A Sbjct 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI 551 Query 482 VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR 540 + + + + + + +Q + K+ D+ +A R Sbjct 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 Query 541 ENQRQQFPVEHVQL 554 R ++V + Sbjct 612 GKSRPIVEPDNVPM 625 >sp|B7LJY3|UVRB_ESCF3 UvrABC system protein B OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 / IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 / CDC 0568-73) OX=585054 GN=uvrB PE=3 SV=1 Length=673 Score = 83.7 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 74/194 (38%), Gaps = 20/194 (10%) Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R ++ T T++ A L +L++ G + + ++ E+I+ Sbjct 446 NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + + A Sbjct 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI 551 Query 482 VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR 540 + + + + + + +Q + K+ D+ +A R Sbjct 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 Query 541 ENQRQQFPVEHVQL 554 R ++V + Sbjct 612 GKSRPIVEPDNVPM 625 >sp|Q6C835|DBP7_YARLI ATP-dependent RNA helicase DBP7 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DBP7 PE=3 SV=1 Length=799 Score = 84.1 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 62/165 (38%), Gaps = 13/165 (8%) Query 356 KILQRQFSSSNSPRGIIFTRTRQSAH----SLLLWLQQQQGLQTVDIRAQLL--IGAGNS 409 ILQ S + + I+F S L Q + T LL + Sbjct 511 DILQS--SEKTNTKVIVFLSCSDSVDFHFDVLSRDGSQINKMDTAKTAPLLLDDVSTSVY 568 Query 410 SQSTHMTQRDQQEVIQKF-QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 ++Q+ + + F ++ T ++L+ T VA GLD+P V+ Y + + Sbjct 569 KLHGSLSQQARTATLASFAKNSTPSILLCTDVASRGLDLPKITHVIEYDPPFSIEDHLHR 628 Query 469 RGR-ARADQSVYAFVA---TEGSRELKRELINEALETLMEQAVAA 509 GR ARA Q A + +++ ++ ++ + + A Sbjct 629 VGRTARAGQDGRALLFLLPGAEEGYVEKLKQSQQMKKTTYENILA 673 Score = 44.4 bits (103), Expect = 0.003, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 47/127 (37%), Gaps = 14/127 (11%) Query 16 EGKNIIIWLPTGAGKTRAAAYVAKRHLETVD------GAKVVVLVNRVHLVTQHGEE--- 66 +++ + TG+GKT A + + D G V+L L TQ Sbjct 270 RERDLFVQAQTGSGKTLAFVLPVLERIMSCDDVSRETGLFAVILTPTRELTTQIYSVLET 329 Query 67 -FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF 125 R+ + G+ ++ + + ++L+ T L + E ++L+ Sbjct 330 LCRKACPWIVPGIVIGGEK-KKSEKARIRKGVNILVATPGRLADHFDNTEA---LDLSQV 385 Query 126 SLIVVDE 132 +V+DE Sbjct 386 RWVVLDE 392 >sp|Q12WZ6|HELS_METBU ATP-dependent DNA helicase Hel308 OS=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) OX=259564 GN=hel308 PE=3 SV=1 Length=760 Score = 83.7 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 42/172 (24%), Positives = 71/172 (41%), Gaps = 16/172 (9%) Query 7 QWEVIMPAL-EGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q E I L E KN++ +PT +GKT A + + +G K + +V L ++ E Sbjct 28 QAEAIEMGLLEKKNLLAAIPTASGKTLLAELAMIKAIR--EGGKALYIVPLRALASEKFE 85 Query 66 EFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF 125 F+ + V +GD+ RA + +D+++ T+E L + Sbjct 86 RFKELAPFGIKVGISTGDLDSRADW---LGVNDIIVATSEKTDSLL----RNGTSWMDEI 138 Query 126 SLIVVDECHH--THKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGA 175 + +VVDE H + + KL R P QV+ L+A+ G Sbjct 139 TTVVVDEIHLLDSKNRGPTLEVT----ITKLMRLNPDVQVVALSATVGNARE 186 >sp|A1JSC3|UVRB_YERE8 UvrABC system protein B OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081) OX=393305 GN=uvrB PE=3 SV=1 Length=670 Score = 83.7 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 40/227 (18%), Positives = 90/227 (40%), Gaps = 22/227 (10%) Query 307 QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSN 366 Q Y K ++ + ++ L L P +++ L ++ ++ Sbjct 388 QTIYVSATPGKYELEKSGGDVIDQVVRPTGLLDPLIEVRPVATQVDDLLSEIR--IRAAI 445 Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R ++ T T++ A L +L++ GA + + ++ E+I+ Sbjct 446 NERVLVTTLTKRMAEDLTEYLEE--------------HGARVRYLHSDIDTVERVEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + + A Sbjct 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAI 551 Query 482 VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQ 527 + + + +++ + +QA + + KI D+ Q Sbjct 552 LYGDRITASMEKAIGETERRRAKQQAYNEERGIIPQGLNKKIGDILQ 598 >sp|Q1EB31|DBP4_COCIM ATP-dependent RNA helicase DBP4 OS=Coccidioides immitis (strain RS) OX=246410 GN=DBP4 PE=3 SV=1 Length=806 Score = 83.7 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 58/393 (15%), Positives = 122/393 (31%), Gaps = 59/393 (15%) Query 165 GLTASPGTGGASKLDGAINHVLQLCANLDTWCI---MSPQNCCPQLQEHSQQPCKQYNLC 221 GL+AS A+ H ++ L + P L+ ++ +Y+ Sbjct 62 GLSASHFKTLTDIQSRAVPHAIKGRDILGAAKTGSGKTLAFLVPVLENLYRKQWTEYDGL 121 Query 222 HRRSQDPFGDLLKKLMDQIH--DHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRV 279 P +L ++ + + G + +++ +L L + Sbjct 122 GALILSPTRELAIQIFEVLRKIGRYHTFSAGLVIGGKSLQEEQERLGRMNIL--VCTPGR 179 Query 280 YALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFD----DRK 335 H+ + H + +D + D + V + R LF + Sbjct 180 MLQHMDQTAAFDTAHIQMLVLDEADRIMDMGFQSTVDAIVEHLPKERQTMLFSATQTKKV 239 Query 336 NELAHLATHGPEN-------------------------PKLEMLEKILQRQFSSSNSPRG 370 ++LA L+ PE KL+ L ++ + Sbjct 240 SDLARLSLRDPEYISVHEAASSATPASLQQHYVVTPLPEKLDTLWSFIRNTLK----SKI 295 Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 ++F + + + + Q G Q + ++ KF Sbjct 296 LVFFSSSKQVRFVYEAFRHMQP------------GIPLLHLHGRQKQSARIDITSKFSRA 343 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRE 489 + L +T VA GLD P + V++ + + + GR AR ++ A + + S E Sbjct 344 KYSCLFSTDVAARGLDFPAVDWVIQLDCPEDADTYIHRVGRTARYERDGRAVLFLDPSEE 403 Query 490 LKRELINEALETLMEQAVAAVQKMDQAEYQAKI 522 L+ L ++ + + +A+ Q I Sbjct 404 ------EGMLKRLEQKKIPIERINIKAKKQQSI 430 Score = 54.4 bits (129), Expect = 3e-06, Method: Composition-based stats. Identities = 25/135 (19%), Positives = 48/135 (36%), Gaps = 10/135 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAY--VAKRHLET----VDGAKVVVLVNRVHLV 60 Q + A++G++I+ TG+GKT A V + DG ++L L Sbjct 75 QSRAVPHAIKGRDILGAAKTGSGKTL-AFLVPVLENLYRKQWTEYDGLGALILSPTRELA 133 Query 61 TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 Q E R++ L ++L+CT + + ++ Sbjct 134 IQIFEVLRKIGRYHTFSAGLVIGGKSLQEEQERLGRMNILVCTPGRMLQHM---DQTAAF 190 Query 121 ELTVFSLIVVDECHH 135 + ++V+DE Sbjct 191 DTAHIQMLVLDEADR 205 >sp|A6ZPU3|DBP4_YEAS7 ATP-dependent RNA helicase DBP4 OS=Saccharomyces cerevisiae (strain YJM789) OX=307796 GN=DBP4 PE=3 SV=1 Length=770 Score = 83.7 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 30/171 (18%), Positives = 54/171 (32%), Gaps = 19/171 (11%) Query 333 DRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQG 392 L P KL++L ++ + I+F + + H + ++ Q Sbjct 261 STPETLQQFYIEVPLADKLDILFSFIKSHLK----CKMIVFLSSSKQVHFVYETFRKMQP 316 Query 393 LQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNV 452 G QR + E + KF L AT V G+D P + Sbjct 317 ------------GISLMHLHGRQKQRARTETLDKFNRAQQVCLFATDVVARGIDFPAVDW 364 Query 453 VVRYGLLTNEISMVQARGR-ARADQSVY--AFVATEGSRELKRELINEALE 500 VV+ + + + GR AR + + + + L +E Sbjct 365 VVQVDCPEDVDTYIHRVGRCARYGKKGKSLIMLTPQEQEAFLKRLNARKIE 415 Score = 57.9 bits (138), Expect = 2e-07, Method: Composition-based stats. Identities = 53/315 (17%), Positives = 100/315 (32%), Gaps = 35/315 (11%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAY------VAKRHLETVDGAKVVVLVNRVHLV 60 Q + I +L+G +++ TG+GKT A + + DG +++ L Sbjct 68 QADSIPVSLQGHDVLAAAKTGSGKTL-AFLVPVIEKLYREKWTEFDGLGALIISPTRELA 126 Query 61 TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 Q E ++ L ++LI T + L + Sbjct 127 MQIYEVLTKIGSHTSFSAGLVIGGKDVKFELERISRINILIGTPGRILQHLDQAVG---L 183 Query 121 ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG 180 + ++V+DE ++ + L+ + P Q L +A+ A Sbjct 184 NTSNLQMLVLDEADRCL-----DMGFKKTLDAIVSTLSPSRQTLLFSATQSQSVADL--- 235 Query 181 AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI 240 A L + +++ L + P D L L I Sbjct 236 ---------ARLSLTDYKTVGTHDVMDGSVNKEASTPETLQQFYIEVPLADKLDILFSFI 286 Query 241 HDHLEMPELSRKFGTQMYE---QQVVKLSEAAA---LAGLQEQRVYALHLRRYNDALLIH 294 HL+ + ++ + K+ + L G Q+QR L ++N A + Sbjct 287 KSHLKCKMIVFLSSSKQVHFVYETFRKMQPGISLMHLHGRQKQRARTETLDKFNRAQQV- 345 Query 295 DTVRAVDALAALQDF 309 + A D +A DF Sbjct 346 -CLFATDVVARGIDF 359 >sp|C3PMP5|UVRB_RICAE UvrABC system protein B OS=Rickettsia africae (strain ESF-5) OX=347255 GN=uvrB PE=3 SV=1 Length=661 Score = 83.7 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 35/168 (21%), Positives = 75/168 (45%), Gaps = 24/168 (14%) Query 346 PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 P ++E L +Q + R ++ T T++ A L +LQ+ + Sbjct 426 PATNQVEDLISEMQTTI--AQGFRVLVTTLTQKMAEDLTAYLQELK-------------- 469 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLT 460 S +++ ++ E+++ + GT+++LV ++ EGLDIP C +V L Sbjct 470 YKTSYLHSNVHTLERIEILRDLRQGTIDVLVGINLLREGLDIPECGLVAILDADKEGFLR 529 Query 461 NEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVA 508 +E+S++Q GRA + + + + ++ + + ETL + + Sbjct 530 SEVSLIQTIGRAARNSAGRVILYAD---KMTKSIDKAVSETLRRRQIQ 574 >sp|Q5ZZD9|UVRB_LEGPH UvrABC system protein B OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) OX=272624 GN=uvrB PE=3 SV=1 Length=663 Score = 83.7 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 36/187 (19%), Positives = 73/187 (39%), Gaps = 21/187 (11%) Query 365 SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI 424 + R ++ T T++ A L +L + G + + ++ E+I Sbjct 443 AQGSRILVTTLTKRMAEDLTEYLSE--------------HGIKVRYLHSDVDTVERMEII 488 Query 425 QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVY 479 + + G ++LV ++ EGLD+P +V L +E S++Q GRA + Sbjct 489 RDLRLGEFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTIGRAARNVKGR 548 Query 480 AFVATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD-LQQAALTKRAAQA 537 A + + + ++R L ++A + + D L+ A + KR Sbjct 549 AILYADTITGSMQRALTETERRREKQKAFNLEHGITPKGINKSVEDILEGAYIGKRKTVV 608 Query 538 AQRENQR 544 A++ Q Sbjct 609 AEKSPQY 615 Score = 37.9 bits (86), Expect = 0.33, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 23/63 (37%), Gaps = 7/63 (11%) Query 11 IMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRM 70 + L + ++ TG+GKT A+V + +++ L Q EF+ Sbjct 28 LESGLAKQTLLGV--TGSGKTFTIAHVIQAM-----KRPTLIMAPNKTLAAQLYGEFKAF 80 Query 71 LDG 73 Sbjct 81 FPD 83 >sp|Q605S7|UVRB_METCA UvrABC system protein B OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) OX=243233 GN=uvrB PE=3 SV=1 Length=664 Score = 83.3 bits (204), Expect = 2e-15, Method: Composition-based stats. Identities = 31/165 (19%), Positives = 68/165 (41%), Gaps = 21/165 (13%) Query 346 PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 P + +++ L ++ F R ++ T T++ A L +L + Sbjct 421 PASTQVDDLLSEIR--FRVQGGERVLVTTLTKRMAEDLTEYLMEHD-------------- 464 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLT 460 + + ++ E+I+ + G ++LV ++ EGLDIP ++V L Sbjct 465 VAVRYLHSDVDTVERVEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLR 524 Query 461 NEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQ 505 + +S++Q GRA + A + + + ++ I+E +Q Sbjct 525 SAVSLIQTIGRAARNLHGKAILYADKVTQSMQQAIDETERRRAKQ 569 >sp|Q82WA9|UVRB_NITEU UvrABC system protein B OS=Nitrosomonas europaea (strain ATCC 19718 / CIP 103999 / KCTC 2705 / NBRC 14298) OX=228410 GN=uvrB PE=3 SV=1 Length=695 Score = 83.7 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 37/191 (19%), Positives = 74/191 (39%), Gaps = 20/191 (10%) Query 359 QRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQR 418 + ++ + R ++ T T++ A L + IR + L + + Sbjct 442 EVSLRAAQNERVLVTTLTKRMAEDLTDYFSDH------GIRVRYL--------HSDIDTV 487 Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRAR 473 ++ E+I+ + G ++LV ++ EGLDIP ++V L +E S++Q GRA Sbjct 488 ERVEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVGILDADKEGFLRSERSLIQTMGRAA 547 Query 474 ADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQ-KMDQAEYQAKIRDLQQAALTK 532 + + + R I+E +Q + Q + +I+DL Sbjct 548 RHVNGTVILYADKITNSMRRAIDETERRRNKQKLFNQQNNITPRGVNKRIKDLIDGVYDS 607 Query 533 RAAQAAQRENQ 543 A ++ Q Sbjct 608 ENAAEHRKVAQ 618 Score = 40.2 bits (92), Expect = 0.074, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 7/65 (11%) Query 8 WEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEF 67 E I L + ++ TG+GKT A + R G +++ L Q E Sbjct 30 VEGIESGLSFQTLLGV--TGSGKTFTIANMIARL-----GRPAIIMAPNKTLAAQLYAEM 82 Query 68 RRMLD 72 R Sbjct 83 REFFP 87 >sp|O94761|RECQ4_HUMAN ATP-dependent DNA helicase Q4 OS=Homo sapiens OX=9606 GN=RECQL4 PE=1 SV=2 Length=1208 Score = 84.1 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 48/204 (24%), Positives = 76/204 (37%), Gaps = 5/204 (2%) Query 352 EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ 411 + L +LQ + N II+ R+ + L+ V + Sbjct 686 QALLTLLQGK-RFQNLDSIIIYCNRREDTERIAALLRTCLHAAWVPGSGGRAPKTTAEAY 744 Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 M R+++ V + F G L ++VAT GLD P V+ GL + S VQA GR Sbjct 745 HAGMCSRERRRVQRAFMQGQLRVVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAVGR 804 Query 472 A-RADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAAL 530 A R Q + + + E REL + AV+++ Q + A + Sbjct 805 AGRDGQPAHCHLFLQPQGEDLRELRRHVHADSTD--FLAVKRLVQRVFPACTCTCTRPPS 862 Query 531 TKRAAQAAQRENQRQQFPVEHVQL 554 + A +R + P E QL Sbjct 863 EQEGAVGGER-PVPKYPPQEAEQL 885 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 37/179 (21%), Positives = 60/179 (34%), Gaps = 8/179 (4%) Query 2 ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVT 61 R Q +M L G + ++ LPTGAGK+ A + +V+ + L+ Sbjct 480 AFRPGQERAVMRILSGISTLLVLPTGAGKSLCYQLPALLYSRRSP-CLTLVVSPLLSLMD 538 Query 62 QHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVE 121 L + ++ A +L+ T E L A + Sbjct 539 DQVSGLPPCLKAACIHSGMTRKQRESVLQKIRAAQVHVLMLTPEALVGA-GGLPPAAQLP 597 Query 122 LTVFSLIVVDECHHTHKDTVYNVIMSQYLE--LKLQRAQPLPQVLGLTASPGTGGASKL 178 F+ +DE H +N YL L+ + LGLTA+ AS + Sbjct 598 PVAFAC--IDEAH-CLSQWSHN-FRPCYLRVCKVLRERMGVHCFLGLTATATRRTASDV 652 >sp|Q4P9E5|SPB4_USTMA ATP-dependent rRNA helicase SPB4 OS=Ustilago maydis (strain 521 / FGSC 9021) OX=237631 GN=SPB4 PE=3 SV=2 Length=767 Score = 83.7 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 61/255 (24%), Positives = 95/255 (37%), Gaps = 23/255 (9%) Query 245 EMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHD-----TVRA 299 + EL K G + +V+ L EA L L + +LRR L + Sbjct 218 RLEELLSKKGVKKSSLEVLVLDEADRLLDLG----FTENLRRILSLLPKQRRTGLFSATM 273 Query 300 VDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNE---LAHLATHGPENPKLEMLEK 356 DAL+ L R V + A+ + + DD + L +L KL L + Sbjct 274 TDALSELVRIGLRNPVRVVVKVEAKHKTSSSIDDSRRTPATLQNLYQLCRAQNKLAQLAR 333 Query 357 ILQRQFSSSNSP------RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSS 410 I+ F SS + + I++ T + Q L+ ++ L G S Sbjct 334 IV--LFESSQNAISGGARKLIVYFSTCAQVNYFYSVFSQVSILRQHRVKLYALHGKQTPS 391 Query 411 QSTHM-TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 + M + G ++L T VA GLD+P +VVV+Y T+ Sbjct 392 KRKSMFDTFVASTALDSGASGA-SVLFCTDVAARGLDLPDVDVVVQYDPPTDPKVFSHRC 450 Query 470 GR-ARADQSVYAFVA 483 GR ARA ++ A V Sbjct 451 GRTARAGRNGRAIVM 465 >sp|A1CTZ2|DBP4_ASPCL ATP-dependent RNA helicase dbp4 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=dbp4 PE=3 SV=1 Length=823 Score = 83.7 bits (205), Expect = 3e-15, Method: Composition-based stats. Identities = 65/413 (16%), Positives = 130/413 (31%), Gaps = 51/413 (12%) Query 146 MSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCI---MSPQN 202 + + E P + GLT+S AI+H L+ L + Sbjct 44 LKESFESFSDLPLSEPTLSGLTSSHFKTLTDIQSRAISHALKGRDVLGAAKTGSGKTLAF 103 Query 203 CCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIH--DHLEMPELSRKFGTQMYEQ 260 P L+ ++ +++ P +L ++ + + G + + Sbjct 104 LVPVLENLYRRQWAEHDGLGALILSPTRELAIQIFEVLRKIGRYHTFSAGLVIGGKSLRE 163 Query 261 QVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQI 320 + +L L + HL + + + +D + D ++ V Sbjct 164 EQERLGRMNIL--VCTPGRMLQHLDQTALFDTYNLQMLVLDEADRILDLGFQQTVDAIVG 221 Query 321 LCAERRLLALFD----DRKNELAHLATHGPENP------------KLEM---------LE 355 + R LF + ++LA L+ PE KL+ Sbjct 222 HLPKERQTLLFSATQTKKVSDLARLSLRDPEYVAVHETASTATPAKLQQHYVIAPLPQKL 281 Query 356 KILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHM 415 IL S+ + ++F + + + + Q G Sbjct 282 DILWSFIRSNLKSKTMVFFSSGKQVRFVYESFRHMQP------------GIPLMHLHGRQ 329 Query 416 TQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA 474 Q + +++ F +L +T VA GLD P + V++ + + + GR AR Sbjct 330 KQGGRLDIMTNFSQAKHCVLFSTDVAARGLDFPAVDWVIQMDCPEDADTYIHRVGRTARY 389 Query 475 DQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQ 527 + A + + S E L+ L ++ V + +A Q I+D Q Sbjct 390 GRDGRAVLFLDPSEE------EGMLKRLEQKKVPIEKINIKANKQQSIKDQLQ 436 Score = 54.0 bits (128), Expect = 4e-06, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 49/135 (36%), Gaps = 10/135 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAY------VAKRHLETVDGAKVVVLVNRVHLV 60 Q I AL+G++++ TG+GKT A + +R DG ++L L Sbjct 76 QSRAISHALKGRDVLGAAKTGSGKTL-AFLVPVLENLYRRQWAEHDGLGALILSPTRELA 134 Query 61 TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 Q E R++ L ++L+CT + L ++ Sbjct 135 IQIFEVLRKIGRYHTFSAGLVIGGKSLREEQERLGRMNILVCTPGRMLQHL---DQTALF 191 Query 121 ELTVFSLIVVDECHH 135 + ++V+DE Sbjct 192 DTYNLQMLVLDEADR 206 >sp|Q9FFT9|RH32_ARATH DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis thaliana OX=3702 GN=RH32 PE=2 SV=1 Length=739 Score = 83.7 bits (205), Expect = 3e-15, Method: Composition-based stats. Identities = 45/270 (17%), Positives = 85/270 (31%), Gaps = 27/270 (10%) Query 328 LALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWL 387 L P KL+ML ++ + R ++F T++ + Sbjct 281 AEAVTATPTSLMQTVMIVPVEKKLDMLWSFIKTHL----NSRILVFLSTKKQVKFVHEAF 336 Query 388 QQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDI 447 + + G S M+Q + V +F + ++L T V GLD Sbjct 337 NKLRP------------GIPLKSLHGKMSQEKRMGVYSQFIE-RQSVLFCTDVLARGLDF 383 Query 448 -PHCNVVVRYGLLTNEISMVQARGR-AR--ADQSVYAFVATEGSRELKRELINEALETLM 503 + VV+ + S + GR AR F+ + +++ + L+ Sbjct 384 DKAVDWVVQVDCPEDVASYIHRVGRTARFYTQGKSLLFLTPSEEKMIEKLQEAKVPIKLI 443 Query 504 EQAVAAVQKMDQ--AEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQLLCINCMV 561 + +Q++ + A K DLQ A +R + + +L N Sbjct 444 KANNQKLQEVSRLLAALLVKYPDLQGVAQRAFITYLRSIHKRRDKEIFDVSKLSIENFSA 503 Query 562 AVGHGSDLRKVEGTHHVNVNPNFSNYYNVS 591 ++G L N+ Y S Sbjct 504 SLG----LPMTPRIRFTNLKTKKKGVYESS 529 Score = 50.6 bits (119), Expect = 4e-05, Method: Composition-based stats. Identities = 23/141 (16%), Positives = 48/141 (34%), Gaps = 9/141 (6%) Query 1 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTR---AAAYVAKRHLETVDGAKV--VVLVN 55 +++ Q I AL G++I+ TG+GKT V +++ Sbjct 92 VDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPILEKLHRERWSPEDGVGCIIISP 151 Query 56 RVHLVTQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP 114 L Q ++ +++ L G ++L+C L + Sbjct 152 TRELAAQTFGVLNKVGKFHKFSAGLLIGGREGVDVEKERVHEMNILVCAPGRLLQHM--- 208 Query 115 EEEEHVELTVFSLIVVDECHH 135 +E + E ++++DE Sbjct 209 DETPNFECPQLQILILDEADR 229 >sp|A1SAC7|RAPA_SHEAM RNA polymerase-associated protein RapA OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) OX=326297 GN=rapA PE=3 SV=1 Length=967 Score = 83.7 bits (205), Expect = 3e-15, Method: Composition-based stats. Identities = 79/452 (17%), Positives = 152/452 (34%), Gaps = 40/452 (9%) Query 27 GAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGP 86 G GKT A + + L T +V+V+V L Q E R + R++V + Sbjct 179 GLGKTIEAGLIIHQQLMTGRAERVLVIVPD-TLRHQWLVEMLRRFNLRFSVFDEDRCVEA 237 Query 87 RAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHT--HKDTVYNV 144 A + L+IC+ L E + L+VVDE HH +D Sbjct 238 FADHDNPFYTEQLVICS----LELLRKKRRLEQALDADWDLMVVDEAHHLEWSEDEPSRA 293 Query 145 IMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCC 204 ++ A+ +P VL LTA+P G +H +L LD Q Sbjct 294 -----YQVVEALAEVVPGVLLLTATP------DQLGHQSHFARL-RLLDPDRFYDYQAFL 341 Query 205 PQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVK 264 + E Q + + + L + + + P + R+ + ++++ + Sbjct 342 DE--EKGYQAVAEAADALASGIKLSDEAINGLTELLSEKDIAPAI-RQIQAENLDEELRQ 398 Query 265 LSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAE 324 + L L ++ L R + A + R + + + ++ Sbjct 399 AARDELLQELLDRHGTGRVLFRNSRASVKGFPKREFHSHGFELPEQYVTAMRVNAMMGGA 458 Query 325 RRLLALFDDRKNELAHLATHGPENP---KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAH 381 R A + N K + L S S + ++ ++A Sbjct 459 RTQEARVAQALSPERIYQEFDDNNASWWKFDPRVDWLIDFLKSHRSKKVLVIASRAETAL 518 Query 382 SLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF--QDGTLNLLVATS 439 +L L+ ++G+Q M+ ++ + F ++G L+ + Sbjct 519 ALEEALRTREGIQATVFH-------------EGMSIIERDKAGAYFAQEEGGAQALICSE 565 Query 440 VAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 + EG + + +V + L N + Q GR Sbjct 566 IGSEGRNFQFASQLVLFDLPLNPDLLEQRIGR 597 >sp|E9PZJ8|ASCC3_MOUSE Activating signal cointegrator 1 complex subunit 3 OS=Mus musculus OX=10090 GN=Ascc3 PE=1 SV=1 Length=2198 Score = 84.1 bits (206), Expect = 3e-15, Method: Composition-based stats. Identities = 41/176 (23%), Positives = 72/176 (41%), Gaps = 19/176 (11%) Query 7 QWEVIMPALE-GKNIIIWLPTGAGKTRAAAYVAKRHLET--------VDGAKVVVLVNRV 57 Q V A +N++I PTGAGKT A + + K+V + Sbjct 482 QSIVFETAYNTNENMLICAPTGAGKTNIAMLTILHEIRQHFHQGVIKKNEFKIVYVAPMK 541 Query 58 HLVTQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE 116 L + F + L+ V L+GDM +L+ T E + + + Sbjct 542 ALAAEMTNYFSKRLEPLGIVVKELTGDMQLS---KSEILRTQMLVTTPEKW--DVVTRKS 596 Query 117 EEHVELTVFS-LIVVDECH--HTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS 169 V L+ L+++DE H H + V I+++ L ++ Q + ++LGL+A+ Sbjct 597 VGDVALSQIVKLLILDEVHLLHEDRGPVLESIVARTLRQ-VESTQSMIRILGLSAT 651 Score = 71.0 bits (172), Expect = 3e-11, Method: Composition-based stats. Identities = 54/303 (18%), Positives = 99/303 (33%), Gaps = 15/303 (5%) Query 19 NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEE--FRRMLDGRWT 76 N+++ PTG+GKT AA R +K V + LV + ++ R Sbjct 1345 NVLLGAPTGSGKTVAAELAIFRVFNKYPTSKAVYIAPLKALVRERMDDWKIRIEEKLGKK 1404 Query 77 VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECH-H 135 V L+GD+ P DL++ T E S + +V+ +++++DE H Sbjct 1405 VIELTGDVTPDM---KSIAKADLIVTTPEKWDGVSRSWQNRSYVQ--QVNILIIDEIHLL 1459 Query 136 THKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTW 195 + ++ + +++GL S A L +N N Sbjct 1460 GEERGPVLEVIVSRTNFISSHTEKPVRIVGL--STALANARDLADWLNIKQMGLFNFRPS 1517 Query 196 CIMSPQNCCPQLQE---HSQQPCKQYNLCHR--RSQDPFGDLLKKLMDQIHDHLEMPELS 250 P Q + + + RS P +L + + L EL Sbjct 1518 VRPVPLEVHIQGFPGQHYCPRMASMNKPAFQAIRSHSPAKPVLIFVSSRRQTRLTALELI 1577 Query 251 RKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFY 310 T+ +Q + + E + R L L + H + D + F Sbjct 1578 AFLATEEDPKQWLNMDEQEMDNIIGTVRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFV 1637 Query 311 HRE 313 + + Sbjct 1638 NCK 1640 Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 65/171 (38%), Gaps = 38/171 (22%) Query 363 SSSNSPRGIIFT----RTRQSAHSLLLWLQQQQG----LQTVDIRAQLLIGA-------- 406 S S + +IF +TR +A L+ +L ++ L + +IG Sbjct 1552 SHSPAKPVLIFVSSRRQTRLTALELIAFLATEEDPKQWLNMDEQEMDNIIGTVRDSNLKL 1611 Query 407 ----GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-------- 454 G + +RD++ V + F + + +L+ATS G++ P V++ Sbjct 1612 TLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGVNFPAHLVIIKGTEYYDG 1671 Query 455 ---RY-GLLTNEISMVQARGRARA----DQSVYAFVATEGSRELKRELINE 497 RY ++Q GRA DQ + + ++ ++ + E Sbjct 1672 KTRRYVDFPIT--DVLQMMGRAGRPQFDDQGKAVILVHDIKKDFYKKFLYE 1720 Score = 42.5 bits (98), Expect = 0.015, Method: Composition-based stats. Identities = 66/462 (14%), Positives = 129/462 (28%), Gaps = 67/462 (15%) Query 213 QPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALA 272 +P + + + + ++RK + Q+VKL + Sbjct 556 EPLGIVVKELTGDMQLSKSEILRTQMLVTTPEKWDVVTRKSVGDVALSQIVKLLILDEVH 615 Query 273 GLQEQRVYALHLRRYNDALLIHDTVRAVDALA---ALQDFYHREHVTKTQILCAERRLLA 329 L E R L + T + L L ++ Sbjct 616 LLHEDRGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHVNPYIGLFYFDG 675 Query 330 LFDDRKNELAHLATHGPENPKLEMLEKILQRQFSS-----SNSPRGIIFTR----TRQSA 380 F L K++ L + + + S + ++F T ++A Sbjct 676 RFRPVPLGQTFLGIKSTN--KMQQLNNMDEVCYESVLKQVKAGHQVMVFVHARNATVRTA 733 Query 381 HSLLLWLQQQQGLQTVDIRAQLLIGA-------------------GNSSQSTHMTQRDQQ 421 SL+ + + G G S M ++D+ Sbjct 734 MSLIERAKNSGQISCFLPTEGPEYGHALKQVQKSRNKQVRELFSDGFSIHHAGMLRQDRN 793 Query 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVR------------YGLLTNEISMVQAR 469 V F +G + +LV T+ G+++P VV++ L + ++Q Sbjct 794 LVENLFSNGHIKVLVCTATLAWGVNLPAHAVVIKGTQIYAAKRGSFVDL--GILDVMQIF 851 Query 470 GRARAD-----QSVYAFVATEGSRELKRELIN------EALETLMEQAVAAVQKMDQAEY 518 GRA + L + LE+L + A + Sbjct 852 GRAGRPQFDKFGEGIIITTHDKLSHYLSLLTQQNPIESQFLESLADNLNAEIALGTVTNV 911 Query 519 QAKIRDLQQAALTKRAA------QAAQRENQRQQFPVEHVQLLCINCMVAVGHGSDLRKV 572 + +R + L R + + Q +H + L I + +R Sbjct 912 EEAVRWMSYTYLYVRMRANPLAYGISHKAYQIDPTLRKHREQLLIEVGQKLDKAKMIRFE 971 Query 573 EGTHH---VNVNPNFSNYYNVSRDPVVINKVFKDWKPGGVIS 611 E T + ++ S++Y N++F K G I Sbjct 972 ERTGYFSSTDLGRTASHFYIKYNTIETFNELFDAHKTEGDIF 1013 >sp|Q6BSM3|SPB4_DEBHA ATP-dependent rRNA helicase SPB4 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=SPB4 PE=3 SV=1 Length=614 Score = 83.3 bits (204), Expect = 3e-15, Method: Composition-based stats. Identities = 41/272 (15%), Positives = 91/272 (33%), Gaps = 20/272 (7%) Query 275 QEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDR 334 + ++ + R +L + L + + + +T + + ++ + + Sbjct 182 EADKLLDISFERDVIKILKQLPKQRRTGLFSATISSAGDTIFRTGMANPVKIVVKSKNSK 241 Query 335 KNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQ 394 L + + E L + I++ T S Q ++ Sbjct 242 NAAPTSLNV-SYMHVEPETKISALIALIKDYRFQKCIVYFPTCTSVKHFYSVFQTLVNVE 300 Query 395 TVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGT----LNLLVATSVAEEGLDIPHC 450 D R + S ++ + + + +Q F +G ++L+ T VA G+DIP Sbjct 301 EED-RYKFF------SLHGQLSTKPRLKTLQNFSEGDSMLHKHVLLTTDVAARGIDIPDV 353 Query 451 NVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAA 509 ++V++ T+ GR RA++ A V + + + +N M + Sbjct 354 DLVIQLDPPTDPDVFFHRSGRTGRANKVGQAIVMLNNN-SREEDYVNFMEVKGMTMSNME 412 Query 510 VQKMDQAEYQAKIRDLQQAALTKRAAQAAQRE 541 + +KI D Q K + R Sbjct 413 CPNI------SKIHDKFQKKFRKYMLEDRARH 438 Score = 40.2 bits (92), Expect = 0.064, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 45/141 (32%), Gaps = 30/141 (21%) Query 18 KNIIIWLPTGAGKTRAAAYV------------AKRHLETVDGAK-----VVVLVNRVHLV 60 K++++ TG+GKT A + E + K ++L L Sbjct 48 KDVVVEAVTGSGKTL-AFVIPVLQKLSNRLYNIDEEGENPEPVKKGHMLSIILSPTRELA 106 Query 61 TQHGEEFRRML------DGRWTVTTLSGDMGPRAGFGH--LARCHDLLICTAELLQMALT 112 Q F ++L L G + L +LI T L L+ Sbjct 107 KQIQTVFDKVLEYIPEDKATIKTQLLVGSLSSVREDIDYFLTNKTHILIATPGRLLDFLS 166 Query 113 SPEEEEHVELTVFSLIVVDEC 133 S +V+ + V+DE Sbjct 167 SN----YVKTNSVEIAVLDEA 183 >sp|B7GSZ2|UVRB_BIFLS UvrABC system protein B OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12) OX=391904 GN=uvrB PE=3 SV=1 Length=703 Score = 83.3 bits (204), Expect = 3e-15, Method: Composition-based stats. Identities = 28/146 (19%), Positives = 64/146 (44%), Gaps = 19/146 (13%) Query 365 SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI 424 + + R ++ T T++ A L +L ++ G + + + E++ Sbjct 449 ARNERALVTTLTKKMAEDLTDYLLER--------------GIKVEYLHSDVDTLRRVELL 494 Query 425 QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVY 479 + ++G ++++V ++ EGLD+P ++V L + S++Q GRA + S Sbjct 495 RMLREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTIGRAARNVSGV 554 Query 480 AFVATEGSRELKRELINEALETLMEQ 505 + + + E R+ I+E +Q Sbjct 555 VIMYADETTEAMRQAIDETDRRRAKQ 580 >sp|Q0D622|RH32_ORYSJ DEAD-box ATP-dependent RNA helicase 32 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0517000 PE=2 SV=2 Length=773 Score = 83.3 bits (204), Expect = 3e-15, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 60/164 (37%), Gaps = 20/164 (12%) Query 338 LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD 397 L A P KL ML ++R R ++F + + + ++ + Sbjct 301 LEQYAMIVPLEQKLNMLWSFIKRHLK----SRILVFLSSVKQVKFVYEVFKKLRP----- 351 Query 398 IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG 457 G M QQ ++ +F++G ++L +T + GLDI + VV+ Sbjct 352 -------GISLRCMHGRMKYEVQQAIVAEFKEGH-SVLFSTDIFARGLDIEDVDWVVQVD 403 Query 458 LLTNEISMVQARGR-AR--ADQSVYAFVATEGSRELKRELINEA 498 N + GR AR F+ E + L++ E+ Sbjct 404 CPENIALYIHRVGRTARYNKRGKALIFLCPEEEKMLEKLKAAES 447 Score = 53.6 bits (127), Expect = 5e-06, Method: Composition-based stats. Identities = 26/138 (19%), Positives = 51/138 (37%), Gaps = 8/138 (6%) Query 2 ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHL---ETVDGAKV--VVLVNR 56 E+ Q + AL G++++ TG+GKT A L V +VL Sbjct 102 EMSEIQRAALPHALCGRDVLGAAKTGSGKTLAFVIPVLEKLYRERWGPEDGVGCIVLSPN 161 Query 57 VHLVTQHGEEFRRMLDGR-WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE 115 L Q F+++ ++ + G+ + ++L+CT L + Sbjct 162 KDLAGQIFNVFQKVGKLHGFSAACIVGNRKGLDEEKAVINNMNILVCTPGRLLQHMGETT 221 Query 116 EEEHVELTVFSLIVVDEC 133 + ++ +V+DE Sbjct 222 NFDCSQIQQI--LVIDEA 237 >sp|P25808|SPB4_YEAST ATP-dependent rRNA helicase SPB4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=SPB4 PE=1 SV=1 Length=606 Score = 82.9 bits (203), Expect = 3e-15, Method: Composition-based stats. Identities = 34/174 (20%), Positives = 63/174 (36%), Gaps = 12/174 (7%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 KL++L IL + I++ T S ++Q + ++ Sbjct 248 KLQLLVSILNNY----KFKKCIVYFPTCVSVSYFYSFIQYLGKRNILVNEVEIF------ 297 Query 410 SQSTHMTQRDQQEVIQKFQDGTLN-LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 S + + + + F D N +L T VA G+DIP ++V++ TN + Sbjct 298 SLHGKLQTSARTKTLTAFTDSLSNSVLFTTDVAARGIDIPDVDLVIQLDPPTNTDMFMHR 357 Query 469 RGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK 521 GR RA++ A RE + +E+ V+ + Y+ Sbjct 358 CGRTGRANRVGKAITFLNEGREEDFIPFMQVKNVELEELDLEVKGITTNFYEDF 411 Score = 40.9 bits (94), Expect = 0.038, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 61/186 (33%), Gaps = 31/186 (17%) Query 26 TGAGKT---RAAAY--VAKRHLETVDGAKVVV----LVNRVHLVTQHGEEFRRML----- 71 TG+GKT V K T K + L Q L Sbjct 53 TGSGKTAAFVIPVLEKVVKEEANTSKFKKAHFHSLIIAPTRELSRQIESVVLSFLEHYPS 112 Query 72 ---DGRWTVTTLSGDMGPRAGFGHLARCH-DLLICTAELLQMALTSPEEEEHVELTVFSL 127 + + + + R + R +LI T + L P V+ + S+ Sbjct 113 DLFPIKCQLLVGTNEATVRDDVSNFLRNRPQILIGTPGRVLDFLQMPA----VKTSACSM 168 Query 128 IVVDECHHTHKDTVYNVIMSQYLE-LKLQRAQPLPQVLGL-TASPGTGGASKLDGAINHV 185 +V+DE + MS + K+ R P + GL +A+ + G+ + + Sbjct 169 VVMDEADRL-------LDMSFIKDTEKILRLLPKQRRTGLFSATMRSAGSDIFKTGLRNP 221 Query 186 LQLCAN 191 +++ N Sbjct 222 VRITVN 227 >sp|A7A237|SPB4_YEAS7 ATP-dependent rRNA helicase SPB4 OS=Saccharomyces cerevisiae (strain YJM789) OX=307796 GN=SPB4 PE=3 SV=1 Length=606 Score = 82.9 bits (203), Expect = 3e-15, Method: Composition-based stats. Identities = 34/174 (20%), Positives = 63/174 (36%), Gaps = 12/174 (7%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 KL++L IL + I++ T S ++Q + ++ Sbjct 248 KLQLLVSILNNY----KFKKCIVYFPTCVSVSYFYSFIQYLGKRNILVNEVEIF------ 297 Query 410 SQSTHMTQRDQQEVIQKFQDGTLN-LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 S + + + + F D N +L T VA G+DIP ++V++ TN + Sbjct 298 SLHGKLQTSARTKTLTAFTDSLSNSVLFTTDVAARGIDIPDVDLVIQLDPPTNTDMFMHR 357 Query 469 RGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK 521 GR RA++ A RE + +E+ V+ + Y+ Sbjct 358 CGRTGRANRVGKAITFLNEGREEDFIPFMQVKNVELEELDLEVKGITTNFYEDF 411 Score = 40.9 bits (94), Expect = 0.038, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 61/186 (33%), Gaps = 31/186 (17%) Query 26 TGAGKT---RAAAY--VAKRHLETVDGAKVVV----LVNRVHLVTQHGEEFRRML----- 71 TG+GKT V K T K + L Q L Sbjct 53 TGSGKTAAFVIPVLEKVVKEEANTSKFKKAHFHSLIIAPTRELSRQIESVVLSFLEHYPS 112 Query 72 ---DGRWTVTTLSGDMGPRAGFGHLARCH-DLLICTAELLQMALTSPEEEEHVELTVFSL 127 + + + + R + R +LI T + L P V+ + S+ Sbjct 113 DLFPIKCQLLVGTNEATVRDDVSNFLRNRPQILIGTPGRVLDFLQMPA----VKTSACSM 168 Query 128 IVVDECHHTHKDTVYNVIMSQYLE-LKLQRAQPLPQVLGL-TASPGTGGASKLDGAINHV 185 +V+DE + MS + K+ R P + GL +A+ + G+ + + Sbjct 169 VVMDEADRL-------LDMSFIKDTEKILRLLPKQRRTGLFSATMRSAGSDIFKTGLRNP 221 Query 186 LQLCAN 191 +++ N Sbjct 222 VRITVN 227 >sp|Q5X906|UVRB_LEGPA UvrABC system protein B OS=Legionella pneumophila (strain Paris) OX=297246 GN=uvrB PE=3 SV=1 Length=663 Score = 83.3 bits (204), Expect = 3e-15, Method: Composition-based stats. Identities = 35/187 (19%), Positives = 73/187 (39%), Gaps = 21/187 (11%) Query 365 SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI 424 + R ++ T T++ A L +L + G + + ++ E+I Sbjct 443 AQGSRILVTTLTKRMAEDLTEYLSE--------------HGIKVRYLHSDVDTVERMEII 488 Query 425 QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVY 479 + + G ++LV ++ EGLD+P +V L +E S++Q GRA + Sbjct 489 RDLRLGEFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTIGRAARNVKGR 548 Query 480 AFVATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD-LQQAALTKRAAQA 537 A + + + ++R L ++A + + D L+ A + KR Sbjct 549 AILYADTMTGSMQRALTETERRREKQKAFNLKHGITPKGINKSVEDILEGAYIGKRKTMV 608 Query 538 AQRENQR 544 A++ + Sbjct 609 AEQAPRY 615 Score = 37.9 bits (86), Expect = 0.32, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 23/63 (37%), Gaps = 7/63 (11%) Query 11 IMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRM 70 + L + ++ TG+GKT A+V + +++ L Q EF+ Sbjct 28 LESGLAKQTLLGV--TGSGKTFTIAHVIQAM-----KRPTLIMAPNKTLAAQLYGEFKAF 80 Query 71 LDG 73 Sbjct 81 FPD 83 >sp|P75558|UVRB_MYCPN UvrABC system protein B OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1) OX=272634 GN=uvrB PE=3 SV=1 Length=657 Score = 83.3 bits (204), Expect = 3e-15, Method: Composition-based stats. Identities = 45/264 (17%), Positives = 96/264 (36%), Gaps = 36/264 (14%) Query 307 QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSN 366 + Y + +I + ++ L P++ ++E L + Q + Sbjct 392 KVIYVSATPREEEIQLSHNNVVEQLVRPTYLLDPEVIVKPKDNQVEDLVSEIINQ--RKH 449 Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R + T + A +L +L+++ +I+ + + ++ ++ Sbjct 450 NGRTFVTVLTIKMAENLTDFLKER------NIKVAYI--------HKDIKALERLILLTD 495 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G LV ++ EGLD+P ++V + L +E S++Q GRA + Sbjct 496 LRKGEYECLVGINLLREGLDVPEVSLVAIFDADIPGLPRDERSLIQIIGRAARNVHGRVI 555 Query 482 V-----ATEGSRELK----RELINEALETLMEQAVAAVQK----MDQAEYQAKIRDLQQA 528 + + + + +K R I A + VQK + + K + Q+A Sbjct 556 MYANTISEQMDKAIKETQRRRTIQMAYNEQHHKTPMTVQKPITLNQPIKLKTKSSEQQKA 615 Query 529 ALTK--RAAQAAQRENQRQQFPVE 550 AL K NQ + +E Sbjct 616 ALIKQLTKEMKQAAANQNYELAIE 639 >sp|Q54S03|DDX18_DICDI Probable ATP-dependent RNA helicase ddx18 OS=Dictyostelium discoideum OX=44689 GN=ddx18 PE=3 SV=1 Length=602 Score = 82.9 bits (203), Expect = 3e-15, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 47/129 (36%), Gaps = 16/129 (12%) Query 357 ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT 416 +L + S + I+F + + L +DI L G Sbjct 355 LLYTFLKKNLSKKIIVFLSSCNAVKYTAELL------NYIDIPVLELHGR--------QK 400 Query 417 QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARA- 474 Q+ + +F + +L+ T VA GLDIP + +++Y + + GR AR Sbjct 401 QQKRTNTFYEFVNAEKGILICTDVAARGLDIPSVDWIIQYDPPDDPKEYIHRVGRTARGV 460 Query 475 DQSVYAFVA 483 + A + Sbjct 461 GKKGRALLF 469 Score = 64.4 bits (155), Expect = 2e-09, Method: Composition-based stats. Identities = 64/396 (16%), Positives = 135/396 (34%), Gaps = 54/396 (14%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAY------VAKRHLETVDGAKVVVLVNRVHLV 60 Q + I+P LEGK+++ TG+GKT A + K + + +G V+++ L Sbjct 146 QAKSILPLLEGKDLLGAARTGSGKTL-AFLIPAIEVLVKSNFKPRNGTGVIIISPTRELA 204 Query 61 TQHGEEFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 Q R ++ + G + L + +LL+ T L L + + Sbjct 205 LQIYGVARELMKYHTQTHGIVIGGASKKPEEERLEKGVNLLVATPGRLLDHLQNTK--GF 262 Query 120 VELTVFSLIVVDEC------------HHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLT 167 + +++DE H K + + ++ + +V L Sbjct 263 IT-KNLKCLIIDEADRILEVGFEEEMHQIIKKVPKTRQTMLFSATQTRKVDDIAKV-SLN 320 Query 168 ASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQ-EHSQQPCKQYNLCHRRSQ 226 SP G + L+ ++ P L ++ + + S Sbjct 321 NSPVYVGVDD-----EREISTVEGLEQGYVVCPSERRFLLLYTFLKKNLSKKIIVFLSSC 375 Query 227 DPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR 286 + ++ +++++P L +++ +Q + + ++ + Sbjct 376 NAVKYT-----AELLNYIDIPVL------ELHGRQKQQKRTNTFYEFVNAEKGILICTDV 424 Query 287 YNDALLIHDTVRAV--DALAALQDFYHREHVTKTQILCAERRLLALFDD-----RKNELA 339 L I + D +++ HR T + R LL L + +LA Sbjct 425 AARGLDIPSVDWIIQYDPPDDPKEYIHRVGRTARGVGKKGRALLFLLPKELGFLKYLKLA 484 Query 340 HLATHGPENPKLEM------LEKILQRQFSSSNSPR 369 + + E PK ++ LEK++ + F NS R Sbjct 485 KVPLNEYEFPKSKIANVQDQLEKVVSQNFYLYNSAR 520 >sp|A4W8C2|UVRB_ENT38 UvrABC system protein B OS=Enterobacter sp. (strain 638) OX=399742 GN=uvrB PE=3 SV=1 Length=673 Score = 82.9 bits (203), Expect = 3e-15, Method: Composition-based stats. Identities = 33/195 (17%), Positives = 74/195 (38%), Gaps = 20/195 (10%) Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R ++ T T++ A L +L++ G + + ++ E+I+ Sbjct 446 NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + + A Sbjct 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNINGKAI 551 Query 482 VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR 540 + + + + + + + + K+ D+ +A R Sbjct 552 LYGDRITASMAKAISETERRREKQHQYNLDNGIVPQGLNKKVVDILALGQGLAKTKAKGR 611 Query 541 ENQRQQFPVEHVQLL 555 R + V+L+ Sbjct 612 GKSRSPVEADPVELV 626 >sp|O34750|YFML_BACSU Probable ATP-dependent RNA helicase YfmL OS=Bacillus subtilis (strain 168) OX=224308 GN=yfmL PE=1 SV=1 Length=376 Score = 81.4 bits (199), Expect = 3e-15, Method: Composition-based stats. Identities = 66/371 (18%), Positives = 124/371 (33%), Gaps = 49/371 (13%) Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 +P A++L V+ ++ + P Sbjct 28 TPVQEQAAQLIMDGKDVI-------AESPTGTGKTLAYALPVLERIKPEQKHPQAVILAP 80 Query 229 FGDLLKKLMDQIHDHLEMPELS--RKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRR 286 +L+ ++ I D EL G ++QV KL + + RV+ L ++ Sbjct 81 SRELVMQIFQVIQDWKAGSELRAASLIGGANVKKQVEKLKKHPHIIVGTPGRVFEL-IKA 139 Query 287 YNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDD------------- 333 + T+ +D L HRE + + R L F Sbjct 140 KKLKMHEVKTI-VLDETDQLVLPEHRETMKQIIKTTLRDRQLLCFSATLKKETEDVLREL 198 Query 334 -RKNELAHLATHGPENPKLEMLEKI--------LQRQFSSSNSPRGIIFTRTRQSAHSLL 384 ++ E+ + E K++ I L ++ S + ++F R + Sbjct 199 AQEPEVLKVQRSKAEAGKVKHQYLICDQRDKVKLLQKLSRLEGMQALVFVR------DIG 252 Query 385 LWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEG 444 + L + +L S++ M ++ ++I F+DG LL+AT +A G Sbjct 253 NLSVYAEKLAYHHVELGVLH-----SEAKKM---ERAKIIATFEDGEFPLLLATDIAARG 304 Query 445 LDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLM 503 LDI + V+ + +E V GR RA + E K + + + L + Sbjct 305 LDIENLPYVIHADIP-DEDGYVHRSGRTGRAGKEGNVLSLVTKLEESKLKKMAKKLGVEL 363 Query 504 EQAVAAVQKMD 514 +AV A K+ Sbjct 364 SEAVYAGGKLK 374 Score = 58.3 bits (139), Expect = 9e-08, Method: Composition-based stats. Identities = 39/232 (17%), Positives = 79/232 (34%), Gaps = 25/232 (11%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE 65 Q + ++GK++I PTG GKT A A ++ + V+L LV Q + Sbjct 31 QEQAAQLIMDGKDVIAESPTGTGKTLAYALPVLERIKPEQKHPQAVILAPSRELVMQIFQ 90 Query 66 EFRR-MLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTV 124 + +L G + L + +++ T + + + + +++ Sbjct 91 VIQDWKAGSELRAASLIGGANVKKQVEKLKKHPHIIVGTPGRVFELIKAKK----LKMHE 146 Query 125 FSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINH 184 IV+DE + M Q ++ L+ Q+L +A+ L Sbjct 147 VKTIVLDETDQLVL-PEHRETMKQIIKTTLRDR----QLLCFSATLKKETEDVLRELAQE 201 Query 185 VLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKL 236 ++ Q + + QY +C +R + L +L Sbjct 202 ----------PEVLKVQRSKAEAGKVKH----QYLICDQRDKVKLLQKLSRL 239 >sp|Q47EI2|UVRB_DECAR UvrABC system protein B OS=Dechloromonas aromatica (strain RCB) OX=159087 GN=uvrB PE=3 SV=1 Length=690 Score = 82.9 bits (203), Expect = 3e-15, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 71/186 (38%), Gaps = 20/186 (11%) Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 R ++ T T++ + L +L G + + ++ E+I+ Sbjct 458 GERVLVTTLTKRMSEDLTDFLADN--------------GIKVRYLHSDIDTVERVEIIRD 503 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLDIP ++V L +E S++Q GRA A Sbjct 504 LRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARHIHGTAI 563 Query 482 VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR 540 + + ++ ++R + + A + KI+D+ +AQ + Sbjct 564 LYADTVTQSMQRAIAETGRRREKQIAFNLEHGITPRGVSKKIKDIIDGVYDAGSAQTELK 623 Query 541 ENQRQQ 546 Q++ Sbjct 624 AAQQRA 629 Score = 37.9 bits (86), Expect = 0.36, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 24/65 (37%), Gaps = 7/65 (11%) Query 8 WEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEF 67 E + L + ++ TG+GKT A V R G +VL L Q EF Sbjct 38 VEGLDDGLSFQTLLGV--TGSGKTYTMANVIART-----GRPALVLAPNKTLAAQLYSEF 90 Query 68 RRMLD 72 + Sbjct 91 KEFFP 95 >sp|Q03JK4|UVRB_STRTD UvrABC system protein B OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) OX=322159 GN=uvrB PE=3 SV=1 Length=668 Score = 82.9 bits (203), Expect = 3e-15, Method: Composition-based stats. Identities = 34/201 (17%), Positives = 76/201 (38%), Gaps = 20/201 (10%) Query 363 SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE 422 + R + T T++ A L +L++ +G + + ++ E Sbjct 451 RTEKGERVFVTTLTKKMAEDLTDYLKE--------------MGVKVKYMHSDIKTLERTE 496 Query 423 VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQS 477 +I+ + G ++L+ ++ EG+D+P ++V L NE ++Q GRA + Sbjct 497 IIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSD 556 Query 478 VYAFVATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQ 536 + + + + +++ + A ++ A + + +IRDL T A Sbjct 557 GHVIMYADKITESMQKAMDETARRREIQMAYNKEHGITPQTIKKEIRDLISITKTNEAEV 616 Query 537 AAQRENQRQQFPVEHVQLLCI 557 A N E + + Sbjct 617 AEDTVNYSAMNKKERQEAIKK 637 >sp|Q32K36|RAPA_SHIDS RNA polymerase-associated protein RapA OS=Shigella dysenteriae serotype 1 (strain Sd197) OX=300267 GN=rapA PE=3 SV=1 Length=968 Score = 83.3 bits (204), Expect = 3e-15, Method: Composition-based stats. Identities = 78/476 (16%), Positives = 153/476 (32%), Gaps = 44/476 (9%) Query 5 SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ 62 +Q + +++ G GKT A + + L + +V+++V L Q Sbjct 156 PHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVP-ETLQHQ 214 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 E R + R+ + + + L+IC+ + ++ S + EH+ Sbjct 215 WLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICSPDFVR---RSKQRLEHLCE 271 Query 123 TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG 180 + L+VVDE HH +D + Q A+ +P VL LTA+P + G Sbjct 272 AEWDLLVVDEAHHLVWSEDAPSRE-----YQAIEQLAEHVPGVLLLTATP------EQLG 320 Query 181 AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI 240 +H +L LD + + + +P D L L + I Sbjct 321 MESHFARL-RLLDPNRFHDFAQFVEE--QKNYRPVADAVAMLLAGNKLSNDELNMLGEMI 377 Query 241 HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV 300 + P L Q + + + RV + R + Sbjct 378 GEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIK 437 Query 301 DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG---PENPKLEMLEKI 357 L + AE R + + + +P++E L Sbjct 438 LPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGY 497 Query 358 LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ 417 L S + ++ +A L L++++G++ M+ Sbjct 498 LTSH----RSQKVLVICAKAATALQLEQVLREREGIRAAVFH-------------EGMSI 540 Query 418 RDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 ++ F +D +L+ + + EG + + +V + L N + Q GR Sbjct 541 IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR 596 >sp|Q67T57|UVRB_SYMTH UvrABC system protein B OS=Symbiobacterium thermophilum (strain DSM 24528 / JCM 14929 / IAM 14863 / T) OX=292459 GN=uvrB PE=3 SV=1 Length=659 Score = 82.9 bits (203), Expect = 3e-15, Method: Composition-based stats. Identities = 40/208 (19%), Positives = 77/208 (37%), Gaps = 26/208 (13%) Query 365 SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI 424 + R ++ T T++ A L +L++ +G + + ++ +++ Sbjct 444 KKNQRVLVTTLTKRMAEDLTEYLKE--------------LGVKVRYMHSDVETIERMQIV 489 Query 425 QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVY 479 + + G ++LV ++ EGLDIP ++V L E S++Q GRA + Sbjct 490 RDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAARNAEGK 549 Query 480 AFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKI----RDLQQAALTKRAA 535 + + + ++ IN ET +A+ I RD+ QA A Sbjct 550 VIMYADRITQSMQKAIN---ETNRRRAIQEAYNRKHGIVPKTIVKPVRDVIQAVKPVAEA 606 Query 536 QAAQRENQRQQFPVEHVQLLCINCMVAV 563 A + + V L M A Sbjct 607 GPANILDTPPHEIPKVVAKLRKEMMQAA 634 >sp|Q5M3D5|UVRB_STRT2 UvrABC system protein B OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) OX=264199 GN=uvrB PE=3 SV=1 Length=668 Score = 82.9 bits (203), Expect = 3e-15, Method: Composition-based stats. Identities = 34/201 (17%), Positives = 76/201 (38%), Gaps = 20/201 (10%) Query 363 SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE 422 + R + T T++ A L +L++ +G + + ++ E Sbjct 451 RTEKGERVFVTTLTKKMAEDLTDYLKE--------------MGVKVKYMHSDIKTLERTE 496 Query 423 VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQS 477 +I+ + G ++L+ ++ EG+D+P ++V L NE ++Q GRA + Sbjct 497 IIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSD 556 Query 478 VYAFVATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQ 536 + + + + +++ + A ++ A + + +IRDL T A Sbjct 557 GHVIMYADKITESMQKAMDETARRREIQMAYNKEHGITPQTIKKEIRDLISITKTNEAEV 616 Query 537 AAQRENQRQQFPVEHVQLLCI 557 A N E + + Sbjct 617 AEDTVNYSAMNKKERQEAIKK 637 >sp|Q5LYS1|UVRB_STRT1 UvrABC system protein B OS=Streptococcus thermophilus (strain CNRZ 1066) OX=299768 GN=uvrB PE=3 SV=1 Length=668 Score = 82.9 bits (203), Expect = 3e-15, Method: Composition-based stats. Identities = 34/201 (17%), Positives = 76/201 (38%), Gaps = 20/201 (10%) Query 363 SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE 422 + R + T T++ A L +L++ +G + + ++ E Sbjct 451 RTEKGERVFVTTLTKKMAEDLTDYLKE--------------MGVKVKYMHSDIKTLERTE 496 Query 423 VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQS 477 +I+ + G ++L+ ++ EG+D+P ++V L NE ++Q GRA + Sbjct 497 IIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSD 556 Query 478 VYAFVATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQ 536 + + + + +++ + A ++ A + + +IRDL T A Sbjct 557 GHVIMYADKITESMQKAMDETARRREIQMAYNKEHGITPQTIKKEIRDLISITKTNEAEV 616 Query 537 AAQRENQRQQFPVEHVQLLCI 557 A N E + + Sbjct 617 AEDTVNYSAMNKKERQEAIKK 637 >sp|A1CW14|HAS1_NEOFI ATP-dependent RNA helicase has1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=has1 PE=3 SV=1 Length=622 Score = 82.9 bits (203), Expect = 3e-15, Method: Composition-based stats. Identities = 42/260 (16%), Positives = 86/260 (33%), Gaps = 44/260 (17%) Query 253 FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHR 312 G + KL + L R+ HL+ + + +D + + Sbjct 247 IGGANRRAEAEKLMKGVNLLIATPGRLLD-HLQNTQGFIFKNLKTLVIDEADRILEVGFE 305 Query 313 EHVTK-TQILCAERRLLALFDD----RKNELAHLAT----------HGPENPKLEMLEK- 356 + + + +IL +E R LF + +LA ++ H E+ +E LE+ Sbjct 306 DEMRQIVKILPSEERQTMLFSATQTTKVEDLARISLRPGPLYINVDHRKEHSTVEGLEQG 365 Query 357 -----------ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 +L + + I+F + + L +D+ L G Sbjct 366 YVICEADKRFLLLFSFLKRNLKKKIIVFFSSCNCVK------YHAELLNYIDLPVLELHG 419 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465 Q+ + +F + L+ T VA GLDIP + ++++ + Sbjct 420 --------KQKQQKRTNTFFEFCNAKQGTLICTDVAARGLDIPAVDWIIQFDPPDDPRDY 471 Query 466 VQARGRA--RADQSVYAFVA 483 + GR A+ + + Sbjct 472 IHRVGRTARGANAKGRSLMF 491 Score = 51.3 bits (121), Expect = 2e-05, Method: Composition-based stats. Identities = 32/135 (24%), Positives = 47/135 (35%), Gaps = 9/135 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT---RAAAYVAKRHLETVD--GAKVVVLVNRVHLVT 61 Q I P L G++++ TG+GKT A L G V+V+ L Sbjct 167 QRRTIPPLLAGRDVLGAAKTGSGKTLSFLIPAVEMLSALRFKPRNGTGVIVVSPTRELAL 226 Query 62 QHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 Q R + + G RA L + +LLI T L L + + Sbjct 227 QIFGVARELCQYHSQTYGIVIGGANRRAEAEKLMKGVNLLIATPGRLLDHLQNTQGFIFK 286 Query 121 ELTVFSLIVVDECHH 135 L +V+DE Sbjct 287 NLKT---LVIDEADR 298 >sp|Q4WQM4|HAS1_ASPFU ATP-dependent RNA helicase has1 OS=Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293) OX=330879 GN=has1 PE=3 SV=2 Length=622 Score = 82.9 bits (203), Expect = 4e-15, Method: Composition-based stats. Identities = 49/318 (15%), Positives = 100/318 (31%), Gaps = 47/318 (15%) Query 253 FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHR 312 G + KL + L R+ HL+ + + +D + + Sbjct 247 IGGANRRAEAEKLMKGVNLLIATPGRLLD-HLQNTQGFVFKNLKTLVIDEADRILEVGFE 305 Query 313 EHVTK-TQILCAERRLLALFDD----RKNELAHLAT----------HGPENPKLEMLEK- 356 + + + +IL +E R LF + +LA ++ H E+ +E LE+ Sbjct 306 DEMRQIVKILPSEERQTMLFSATQTTKVEDLARISLRPGPLYINVDHRKEHSTVEGLEQG 365 Query 357 -----------ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 +L + + I+F + + L +D+ L G Sbjct 366 YVICEADKRFLLLFSFLKRNLKKKIIVFFSSCNCVK------YHAELLNYIDLPVLELHG 419 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465 Q+ + +F + L+ T VA GLDIP + ++++ + Sbjct 420 --------KQKQQKRTNTFFEFCNAKQGTLICTDVAARGLDIPAVDWIIQFDPPDDPRDY 471 Query 466 VQARGRARAD---QSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKI 522 + GR + + L + + + A Q++ + I Sbjct 472 IHRVGRTARGTNAKGRSLMFLQPSEVGFLKHLKEARVPVVEFEFPANKIVNVQSQLEKLI 531 Query 523 RDLQQAALTKRAAQAAQR 540 Q L K A + + Sbjct 532 G--QNYYLNKSAKEGYRS 547 Score = 51.3 bits (121), Expect = 2e-05, Method: Composition-based stats. Identities = 32/135 (24%), Positives = 47/135 (35%), Gaps = 9/135 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT---RAAAYVAKRHLETVD--GAKVVVLVNRVHLVT 61 Q I P L G++++ TG+GKT A L G V+V+ L Sbjct 167 QRRTIPPLLAGRDVLGAAKTGSGKTLSFLIPAVEMLSALRFKPRNGTGVIVVSPTRELAL 226 Query 62 QHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 Q R + + G RA L + +LLI T L L + + Sbjct 227 QIFGVARELCQYHSQTYGIVIGGANRRAEAEKLMKGVNLLIATPGRLLDHLQNTQGFVFK 286 Query 121 ELTVFSLIVVDECHH 135 L +V+DE Sbjct 287 NLKT---LVIDEADR 298 >sp|Q837R9|UVRB_ENTFA UvrABC system protein B OS=Enterococcus faecalis (strain ATCC 700802 / V583) OX=226185 GN=uvrB PE=3 SV=1 Length=665 Score = 82.9 bits (203), Expect = 4e-15, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 71/183 (39%), Gaps = 20/183 (11%) Query 361 QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ 420 R + T T++ A L + ++ +G + + ++ Sbjct 444 HERIEKDQRVFVTTLTKKMAEDLTDYFKE--------------LGLKVKYLHSDIKTLER 489 Query 421 QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARAD 475 E+I+ + G ++L+ ++ EG+D+P +++ L +E S+VQ GRA + Sbjct 490 TEIIRDLRLGEFDILIGINLLREGIDVPEVSLIAILDADKEGFLRSERSLVQTMGRAARN 549 Query 476 QSVYAFVATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRA 534 + + + ++R + A +++A ++ +IRDL + T Sbjct 550 AEGKVIMYADKITDSMQRAMDETARRRAIQEAYNEEHGIEPKTIIKEIRDLISISKTADK 609 Query 535 AQA 537 + Sbjct 610 DET 612 >sp|Q5P9H3|UVRB_ANAMM UvrABC system protein B OS=Anaplasma marginale (strain St. Maries) OX=234826 GN=uvrB PE=3 SV=1 Length=651 Score = 82.9 bits (203), Expect = 4e-15, Method: Composition-based stats. Identities = 32/201 (16%), Positives = 82/201 (41%), Gaps = 22/201 (11%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 R +I T T++ A +L ++++ +G + + + ++ E+I + Sbjct 446 RVLITTLTKKMAENLTEYMRE--------------MGIKVAYLHSDVKTLERIEIISDLR 491 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAFVA 483 G +++LV ++ EGLDIP C +V L + S++Q GRA + + Sbjct 492 LGVIDVLVGVNLMREGLDIPECALVGILDADKEGFLRSTTSLIQTIGRAARNVEGRVIL- 550 Query 484 TEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQ 543 + + + + ET + + + + I+ Q +L++R + ++ ++ Sbjct 551 --YANVITKSMRTAMEETDRRRDIQRKYNQEHSIVPRTIQKPVQTSLSERVGSSRKKVSR 608 Query 544 RQQFPVEHVQLLCINCMVAVG 564 + ++ + + + Sbjct 609 DTNTDPANRDIVELQKEMLLC 629 >sp|B9KH59|UVRB_ANAMF UvrABC system protein B OS=Anaplasma marginale (strain Florida) OX=320483 GN=uvrB PE=3 SV=1 Length=651 Score = 82.9 bits (203), Expect = 4e-15, Method: Composition-based stats. Identities = 32/201 (16%), Positives = 82/201 (41%), Gaps = 22/201 (11%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 R +I T T++ A +L ++++ +G + + + ++ E+I + Sbjct 446 RVLITTLTKKMAENLTEYMRE--------------MGIKVAYLHSDVKTLERIEIISDLR 491 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAFVA 483 G +++LV ++ EGLDIP C +V L + S++Q GRA + + Sbjct 492 LGVIDVLVGVNLMREGLDIPECALVGILDADKEGFLRSTTSLIQTIGRAARNVEGRVIL- 550 Query 484 TEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQ 543 + + + + ET + + + + I+ Q +L++R + ++ ++ Sbjct 551 --YANVITKSMRTAMEETDRRRDIQRKYNQEHSIVPRTIQKPVQTSLSERVGSSRKKVSR 608 Query 544 RQQFPVEHVQLLCINCMVAVG 564 + ++ + + + Sbjct 609 DTNTDPANRDIVELQKEMLLC 629 >sp|Q9K6X9|UVRB_HALH5 UvrABC system protein B OS=Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) OX=272558 GN=uvrB PE=3 SV=1 Length=660 Score = 82.9 bits (203), Expect = 4e-15, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 19/126 (15%) Query 365 SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI 424 + + R ++ T T++ A L +L++ +G + + ++ E+I Sbjct 443 AKNERVLVTTLTKKMAEDLTDYLKE--------------VGIKVRYLHSEVKTLERIEII 488 Query 425 QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVY 479 ++ + GT N+LV ++ EGLDIP ++V L E S++Q GRA + + Y Sbjct 489 RQLRLGTFNVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAARNANGY 548 Query 480 AFVATE 485 + + Sbjct 549 VIMYAD 554 >sp|Q2HCV7|ROK1_CHAGB ATP-dependent RNA helicase ROK1 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=ROK1 PE=3 SV=1 Length=667 Score = 82.9 bits (203), Expect = 4e-15, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 65/160 (41%), Gaps = 25/160 (16%) Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ---A 468 + M + +++ +F+ G + +LV T V G+D N VV Y + T+ + V Sbjct 477 HSSMADSARSKIMARFRAGEVWVLVTTDVLARGVDFAGVNGVVNYDVPTSAAAYVHRAGR 536 Query 469 RGRARADQSVYAFVATEGSRELKRELIN------------------EALETLMEQAVAAV 510 GRA + V T+ + + N ++ + A+ V Sbjct 537 TGRAGREGGVAVTFYTKDDIPFVKSVANVIAASEKQAGVQADGGGGGTVQKWLLDALPKV 596 Query 511 QKMDQAEYQAKIRDLQQ----AALTKRAAQAAQRENQRQQ 546 K D+ + + + + ++ A +T +++ +RE+ R Q Sbjct 597 AKEDKRKLKVRGVESRRTGGKATITTKSSWERRREHNRAQ 636 >sp|Q2UUN6|HAS1_ASPOR ATP-dependent RNA helicase has1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=has1 PE=3 SV=2 Length=596 Score = 82.5 bits (202), Expect = 4e-15, Method: Composition-based stats. Identities = 42/260 (16%), Positives = 84/260 (32%), Gaps = 44/260 (17%) Query 253 FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHR 312 G + KL + L R+ HL+ + + +D + + Sbjct 226 IGGANRRAEAEKLMKGVNLLVATPGRLLD-HLQNTQGFVFKNLRTLIIDEADRILEVGFE 284 Query 313 EHVTK-TQILCAERRLLALFDD----RKNELAHLAT----------HGPENPKLEMLEK- 356 + + + +IL +E R LF + +LA ++ H E+ +E LE+ Sbjct 285 DEMRQIAKILPSENRQTMLFSATQTTKVEDLARISLRPGPLYINVDHRKEHSTVEGLEQG 344 Query 357 -----------ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 +L + + I+F + S L +D+ L G Sbjct 345 YVICEADKRFLLLFSFLKRNLKKKIIVFLSSCNSVKYYGELL------NYIDLPVLDLHG 398 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465 Q+ + +F + L+ T VA GLDIP + ++++ + Sbjct 399 --------KQKQQKRTNTFFEFCNAKQGTLICTDVAARGLDIPAVDWIIQFDPPDDPRDY 450 Query 466 VQARGRARAD--QSVYAFVA 483 + GR + + Sbjct 451 IHRVGRTARGSNGKGRSLMF 470 Score = 53.6 bits (127), Expect = 4e-06, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 48/135 (36%), Gaps = 9/135 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT---RAAAYVAKRHLETVD--GAKVVVLVNRVHLVT 61 Q I P L G++++ TG+GKT A L G +++ L Sbjct 146 QRRTIPPLLAGRDVLGAAKTGSGKTLSFLIPAIEMLSALRFKPRNGTGAIIVSPTRELAL 205 Query 62 QHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 Q + R +L + G RA L + +LL+ T L L + + Sbjct 206 QIFGQVRELLAHHSQTYGIVIGGANRRAEAEKLMKGVNLLVATPGRLLDHLQNTQGFVFK 265 Query 121 ELTVFSLIVVDECHH 135 L +++DE Sbjct 266 NLRT---LIIDEADR 277 >sp|Q54ZI9|DDX20_DICDI Probable ATP-dependent RNA helicase ddx20 OS=Dictyostelium discoideum OX=44689 GN=ddx20 PE=3 SV=2 Length=849 Score = 82.9 bits (203), Expect = 4e-15, Method: Composition-based stats. Identities = 20/127 (16%), Positives = 43/127 (34%), Gaps = 14/127 (11%) Query 351 LEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSS 410 + K L + + IIF + L L ++ G + Sbjct 352 FQNKCKSLVLVLEQVSFYQAIIFCNHKIRGEELTRQLNRE--------------GWPTAF 397 Query 411 QSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARG 470 + Q+D+ + + + +LV+T + G+D+ N+V+ L + + G Sbjct 398 IAGGQNQKDRLSTMSALKSFNIRILVSTDLISRGIDVERVNLVINLDLPKDHETYFHRIG 457 Query 471 RARADQS 477 R + Sbjct 458 RTGRFGT 464 >sp|Q4R4T6|DDX28_MACFA Probable ATP-dependent RNA helicase DDX28 OS=Macaca fascicularis OX=9541 GN=DDX28 PE=2 SV=1 Length=546 Score = 82.5 bits (202), Expect = 4e-15, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 43/131 (33%), Gaps = 17/131 (13%) Query 350 KLEMLEKILQRQ---FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA 406 K+ L IL+ + S ++F + + + L L + Sbjct 377 KVAELVHILKHHNRAERTGPSGTVLVFCNSSSTVNWLGYILDDHK--------------I 422 Query 407 GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV 466 + M + + Q FQ + ++L+ T +A GLD +VV Y + Sbjct 423 QHLRLQGQMPALMRAGIFQSFQKSSRDILLCTDIASRGLDSTGVELVVNYDFPPTLQDYI 482 Query 467 QARGRARADQS 477 GR S Sbjct 483 HRAGRVGRVGS 493 Score = 54.0 bits (128), Expect = 3e-06, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 52/139 (37%), Gaps = 17/139 (12%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLE--------TVDGAKVVVLVNRVH 58 Q I L G++++ TG+GKT + + L + + +VLV Sbjct 155 QSNTIPQLLRGRHVLCAAETGSGKTLSYLLPLFQRLMVQPSLDSLRIPAPRGLVLVPSRE 214 Query 59 LVTQHGEEFRRMLDGRWT--VTTLSGDMGPRAGFGHLAR--CHDLLICTAELLQMALTSP 114 L Q + + L V L G G LAR D+L+ T L AL S Sbjct 215 L-AQQVQAVAQPLGRSLGLLVRDLEGGHGMCRIRMQLARQPSADVLVATPGALWKALKSR 273 Query 115 EEEEHVELTVFSLIVVDEC 133 + L S +V+DE Sbjct 274 L----ISLEQLSFLVLDEA 288 >sp|Q40466|IF413_TOBAC Eukaryotic initiation factor 4A-13 (Fragment) OS=Nicotiana tabacum OX=4097 PE=2 SV=1 Length=355 Score = 81.0 bits (198), Expect = 4e-15, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 56/144 (39%), Gaps = 19/144 (13%) Query 315 VTKTQILCAERRLLALFDDRKNELAHLATH-GPENPKLEMLEKILQRQFSSSNSPRGIIF 373 +T+ + R L+ D + + E KLE L + + + + +IF Sbjct 230 ITRKFMNQPVRILVKRDDVTLEGIKQFYVNVDKEEWKLETLCDL----YETLAITQSVIF 285 Query 374 TRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN 433 TR+ L ++ + S+ M Q + ++++F+ G+ Sbjct 286 VNTRRKVDWLTDKMRSRD--------------HTVSATHGDMDQNTRDIIMREFRSGSSR 331 Query 434 LLVATSVAEEGLDIPHCNVVVRYG 457 +L+ T + G+D+ ++V+ Y Sbjct 332 VLITTDLLARGIDVQQVSLVINYD 355 >sp|A5E2Z9|HAS1_LODEL ATP-dependent RNA helicase HAS1 OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) OX=379508 GN=HAS1 PE=3 SV=1 Length=559 Score = 82.5 bits (202), Expect = 4e-15, Method: Composition-based stats. Identities = 52/301 (17%), Positives = 95/301 (32%), Gaps = 45/301 (15%) Query 253 FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHR 312 G Q+ KL++ L R+ HL+ + ++ +D + + Sbjct 200 IGGADRRQEATKLAKGVNLLVATPGRLLD-HLKNTQGFVFLNLKALVIDEADRILEIGFE 258 Query 313 EHVTKT-QILCAERRLLALFDD----RKNELAHLA-THGPENPKL--------------- 351 E + + +IL E R LF + +LA ++ GP + Sbjct 259 EEMKQIIKILPNEDRQTMLFSATQTTKVEDLARISLRPGPLYINVVPEKDVSTADGLEQG 318 Query 352 -----EMLEKILQRQFSSSN-SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 +L F N + I+F + S L +D+ L G Sbjct 319 YVVCDSDKRFLLLFSFLKRNIKKKIIVFLSSCNSVKFYSELL------NYIDLPVLDLHG 372 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465 Q+ + +F + +LV T VA GLDIP + ++++ + Sbjct 373 --------KQKQQKRTNTFFEFCNAKQGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDY 424 Query 466 VQARGR-ARA--DQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKI 522 + GR AR + T R L + + A Q++ I Sbjct 425 IHRVGRTARGTDGKGKSLMFLTPSELGFLRYLKAANVPLNEYEFPANKIANVQSQLTKLI 484 Query 523 R 523 + Sbjct 485 K 485 Score = 56.7 bits (135), Expect = 4e-07, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 56/135 (41%), Gaps = 9/135 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA----AAYVAKRH-LETVDGAKVVVLVNRVHLVT 61 Q + I P L G++++ TG+GKT A A + ++ +G V+++ L Sbjct 120 QAKTIPPLLAGRDVLGAAKTGSGKTLAFLLPAVELLYSLKIKPRNGTAVIIITPTRELAL 179 Query 62 QHGEEFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 Q R++++ + G R LA+ +LL+ T L L + + + Sbjct 180 QIFGVARQLMEYHSQTCGIVIGGADRRQEATKLAKGVNLLVATPGRLLDHLKNTQGFVFL 239 Query 121 ELTVFSLIVVDECHH 135 L +V+DE Sbjct 240 NLKA---LVIDEADR 251 >sp|Q5P0E7|UVRB_AROAE UvrABC system protein B OS=Aromatoleum aromaticum (strain DSM 19018 / LMG 30748 / EbN1) OX=76114 GN=uvrB PE=3 SV=1 Length=685 Score = 82.5 bits (202), Expect = 4e-15, Method: Composition-based stats. Identities = 36/190 (19%), Positives = 72/190 (38%), Gaps = 20/190 (11%) Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 R ++ T T++ A L +L + IR + L + + ++ E+I+ Sbjct 458 GERVLVTTLTKRMAEDLTDYLAEN------GIRVRYL--------HSDIDTVERVEIIRD 503 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLDIP ++V L +E S++Q GRA + A Sbjct 504 LRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARHINGRAI 563 Query 482 VATEGSRELKRELINEALETLMEQ-AVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR 540 + + R I+E ++Q A + +I+D+ + + Sbjct 564 LYADVVTRSMRAAIDETERRRVKQIAFNQANGIVPKTVSKRIKDIIDGVYGGDVERDGRS 623 Query 541 ENQRQQFPVE 550 + Sbjct 624 VAEPPPEYFS 633 Score = 35.5 bits (80), Expect = 1.7, Method: Composition-based stats. Identities = 16/47 (34%), Positives = 18/47 (38%), Gaps = 5/47 (11%) Query 26 TGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLD 72 TG+GKT A V R G +VL L Q EFR Sbjct 54 TGSGKTYTMANVIARC-----GRPALVLAPNKTLAAQLYAEFREFFP 95 >sp|A8ALP3|RAPA_CITK8 RNA polymerase-associated protein RapA OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) OX=290338 GN=rapA PE=3 SV=1 Length=968 Score = 82.9 bits (203), Expect = 4e-15, Method: Composition-based stats. Identities = 79/476 (17%), Positives = 152/476 (32%), Gaps = 44/476 (9%) Query 5 SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ 62 +Q + +++ G GKT A + + L + +V+++V L Q Sbjct 156 PHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVP-ETLQHQ 214 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 E R + R+ + + + L+IC+ L A + + EH+ Sbjct 215 WLVEMLRRFNLRFALFDDERYTEAQHDAYNPFETEQLVICS---LDFARRNKQRLEHLCD 271 Query 123 TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG 180 + L+VVDE HH +D Q A+ +P VL LTA+P + G Sbjct 272 AQWDLLVVDEAHHLVWSEDAPSRE-----YMAIEQLAERVPGVLLLTATP------EQLG 320 Query 181 AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI 240 +H +L L + ++ + +P + L L D I Sbjct 321 MESHFARL--RLLDPSRFHDFEQFVE-EQKNYRPVADAVAMLLAGNKLSNEELNMLGDLI 377 Query 241 HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV 300 + P L + Q + + + RV + R + Sbjct 378 GEQDIEPLLQTANSDRDGAQNARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIK 437 Query 301 DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG---PENPKLEMLEKI 357 L + AE R + + G +P++E Sbjct 438 LPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPEQIYQEFEGDSGTWWNFDPRVE----W 493 Query 358 LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ 417 L +S S + ++ +A L L++++G++ M+ Sbjct 494 LMGHLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFH-------------EGMSI 540 Query 418 RDQQEVIQKFQ--DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 ++ F D +L+ + + EG + + +V + L N + Q GR Sbjct 541 IERDRAAAWFSEEDSGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGR 596 >sp|Q9P7T8|YIW2_SCHPO Uncharacterized helicase C694.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC694.02 PE=3 SV=1 Length=1717 Score = 83.3 bits (204), Expect = 4e-15, Method: Composition-based stats. Identities = 63/440 (14%), Positives = 138/440 (31%), Gaps = 34/440 (8%) Query 1 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV 60 + +Q E + +++ + PT +GKT + Y ++ L D V+ + LV Sbjct 734 FDPDEWQRETLDILDRDESVFVVAPTSSGKTFISFYAMEKVLRDNDDGVVIYVAPTKALV 793 Query 61 TQ-HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 Q E + R + R + +LI +LQ L P Sbjct 794 NQLSAEVYARFNKHYPHAGQTVWSVYTRDYRINNPTNCQVLITVPHVLQSMLLQPALANA 853 Query 120 VELTVFSLIVVDECHHTHKDTVYNVIMSQ-YLELKLQRAQPLPQVLGLTASPGTGGASKL 178 I+ DE H M +E +L P P ++ L+A+ G ++ Sbjct 854 WCPK-IRRIIFDEIH-CIGQ------MEDGLVEEQLLLLAPCP-IVALSATVGNPQEFQV 904 Query 179 DGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCH---RRSQDPFGDLLKK 235 ++ + + + ++ ++ L++ K++N Q F Sbjct 905 --WLSALQRAHSYP--IHLIVHEHRYSDLRKFVYGGAKEFNGLQEEGDLGQIAFIHPAAA 960 Query 236 LMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVY--ALHLRRYNDALLI 293 + + R Y ++V + L R + +++ + Sbjct 961 MSFSDGSTTNLAFEPRDCLQLYYAMKLVSKGDFKISRKLDPDRYFEDIPFIKKVDAVGYE 1020 Query 294 HDTVRAVDALAALQDFYH----REHVTKTQILCAERRLLALFDDRKNELAHLATHGPENP 349 +D A+L + + + + K ++ + + + + + A P Sbjct 1021 KKIKATIDTWASLPNAFAPNSPFQALIKHFCSEPQKVVNSQLELHNSAYSLDAISQNLLP 1080 Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIR--AQLLIGAG 407 L+ L S I F RQ L + + + + R ++ Sbjct 1081 MLKDL--------HSKELLPAICFNYDRQECEYLAEIVFKTLVEKEREWRENSEEWKEKM 1132 Query 408 NSSQSTHMTQRDQQEVIQKF 427 + T + + ++KF Sbjct 1133 REYKKWQSTANQRAKQMEKF 1152 Score = 45.2 bits (105), Expect = 0.002, Method: Composition-based stats. Identities = 31/184 (17%), Positives = 62/184 (34%), Gaps = 7/184 (4%) Query 300 VDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQ 359 L + + + + ++ + + R ++ E K + L++ Sbjct 1111 FKTLVEKEREWRENSEEWKEKMREYKKWQSTANQRAKQMEKFEKSATEKQKEQALKEAGD 1170 Query 360 ----RQFSSSNSPRGIIFT--RTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQST 413 F F ++ L L+ + Q V + G + Sbjct 1171 ISWIEFFDPEEPSPEFSFAGAKSTYGKEELYRDLEALRRRQAVPEWYVDALYRGIGIHHS 1230 Query 414 HMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-LLTNEISMVQARGRA 472 + +R +Q V F+ G L +++AT G+++P VV L N ++ QA GRA Sbjct 1231 GLNRRYRQIVEVLFRCGQLTVVIATRTLSLGINMPCRTVVFLGDSLQLNALNFHQAAGRA 1290 Query 473 RADQ 476 Sbjct 1291 GRRG 1294 >sp|Q75C76|DBP4_EREGS ATP-dependent RNA helicase DBP4 OS=Eremothecium gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=DBP4 PE=3 SV=2 Length=763 Score = 82.9 bits (203), Expect = 4e-15, Method: Composition-based stats. Identities = 28/189 (15%), Positives = 64/189 (34%), Gaps = 19/189 (10%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 KL++L ++ + I+F + + H + ++ Q G Sbjct 276 KLDILFSFIKSHLK----SKMIVFLSSSKQVHFVYETFRKMQP------------GISLM 319 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 Q + E + KF L +T V G+D P + V++ + + + Sbjct 320 HLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQTDCPEDVDTYIHRA 379 Query 470 GR-ARADQSVYA--FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQ 526 GR AR ++ + + + L + +E + +K + + Q+ + Sbjct 380 GRSARYGKTGKSLLMLTPQEEDAFLARLKGKLIEPSKLNIKQSKRKSIKPQLQSLLFKDP 439 Query 527 QAALTKRAA 535 + + A Sbjct 440 ELKYLAQKA 448 Score = 52.9 bits (125), Expect = 9e-06, Method: Composition-based stats. Identities = 25/135 (19%), Positives = 44/135 (33%), Gaps = 8/135 (6%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT---RAAAYVAKRHLETV--DGAKVVVLVNRVHLVT 61 Q I AL+G +++ TG+GKT H DG +V+ L Sbjct 68 QRAAIPVALKGHDVLGAAKTGSGKTLAFLVPVLEKLYHERWTELDGLGALVISPTRELAM 127 Query 62 QHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVE 121 Q E ++ L ++LI T L + ++ + Sbjct 128 QIYEVLVKIGKYMSFSAGLVIGGKDVKFEMERVSKINILIGTPGRLLQHM---DQSVGLN 184 Query 122 LTVFSLIVVDECHHT 136 + ++V+DE Sbjct 185 TSNLQILVLDEADRC 199 >sp|Q8YXS9|UVRB_NOSS1 UvrABC system protein B OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=uvrB PE=3 SV=1 Length=665 Score = 82.5 bits (202), Expect = 4e-15, Method: Composition-based stats. Identities = 30/144 (21%), Positives = 58/144 (40%), Gaps = 23/144 (16%) Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 R +I T T++ A L +LQ+ G + + + E++Q Sbjct 444 HERVLITTLTKRMAEDLTEYLQE--------------HGVKVRYLHSEINSIQRIEILQD 489 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G+ ++LV ++ EGLD+P ++V L E S++Q GRA A Sbjct 490 LRQGSFDVLVGVNLLREGLDLPEVSLVAIMDADKEGFLRAERSLIQTIGRAARHIRGQAI 549 Query 482 VATEGSRELKRELINEALETLMEQ 505 + + + + +A+E + Sbjct 550 LYADN----MTDSMIKAIEETDRR 569 >sp|Q46IE1|UVRB_PROMT UvrABC system protein B OS=Prochlorococcus marinus (strain NATL2A) OX=59920 GN=uvrB PE=3 SV=1 Length=678 Score = 82.5 bits (202), Expect = 4e-15, Method: Composition-based stats. Identities = 36/184 (20%), Positives = 79/184 (43%), Gaps = 24/184 (13%) Query 338 LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD 397 L L P + +++ L +++ +S + R ++ T T++ A L +L + + Sbjct 417 LDPLVEVRPTHGQVDDLLFEIRK--RASKNQRILVTTLTKRMAEDLTDYLSENK------ 468 Query 398 IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG 457 IR + L + + ++ E+IQ + G ++LV ++ EGLD+P ++VV Sbjct 469 IRVRYL--------HSEIHSIERIEIIQDLRLGEYDVLVGVNLLREGLDLPEVSLVVILD 520 Query 458 -----LLTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQK 512 L + S++Q GRA A + + ++ + ET + + + Sbjct 521 ADKEGFLRAQRSLIQTIGRAARHVEGLALLYAD---KMTDSMAKAISETERRREIQNIYN 577 Query 513 MDQA 516 ++ Sbjct 578 IEHG 581 >sp|Q8ZQQ4|UVRB_SALTY UvrABC system protein B OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=uvrB PE=3 SV=1 Length=673 Score = 82.5 bits (202), Expect = 5e-15, Method: Composition-based stats. Identities = 31/150 (21%), Positives = 62/150 (41%), Gaps = 29/150 (19%) Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R ++ T T++ A L +L++ G + + ++ E+I+ Sbjct 446 NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + + A Sbjct 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI 551 Query 482 VATE----------GSRELKRELINEALET 501 + + G E +RE + E Sbjct 552 LYGDKITPSMAKAIGETERRREKQQKYNEE 581 >sp|B4TQU3|UVRB_SALSV UvrABC system protein B OS=Salmonella schwarzengrund (strain CVM19633) OX=439843 GN=uvrB PE=3 SV=1 Length=673 Score = 82.5 bits (202), Expect = 5e-15, Method: Composition-based stats. Identities = 31/150 (21%), Positives = 62/150 (41%), Gaps = 29/150 (19%) Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R ++ T T++ A L +L++ G + + ++ E+I+ Sbjct 446 NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + + A Sbjct 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI 551 Query 482 VATE----------GSRELKRELINEALET 501 + + G E +RE + E Sbjct 552 LYGDKITPSMAKAIGETERRREKQQKYNEE 581 >sp|C0PWY7|UVRB_SALPC UvrABC system protein B OS=Salmonella paratyphi C (strain RKS4594) OX=476213 GN=uvrB PE=3 SV=1 Length=673 Score = 82.5 bits (202), Expect = 5e-15, Method: Composition-based stats. Identities = 31/150 (21%), Positives = 62/150 (41%), Gaps = 29/150 (19%) Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R ++ T T++ A L +L++ G + + ++ E+I+ Sbjct 446 NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + + A Sbjct 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI 551 Query 482 VATE----------GSRELKRELINEALET 501 + + G E +RE + E Sbjct 552 LYGDKITPSMAKAIGETERRREKQQKYNEE 581 >sp|A9MTI2|UVRB_SALPB UvrABC system protein B OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) OX=1016998 GN=uvrB PE=3 SV=1 Length=673 Score = 82.5 bits (202), Expect = 5e-15, Method: Composition-based stats. Identities = 31/150 (21%), Positives = 62/150 (41%), Gaps = 29/150 (19%) Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R ++ T T++ A L +L++ G + + ++ E+I+ Sbjct 446 NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + + A Sbjct 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI 551 Query 482 VATE----------GSRELKRELINEALET 501 + + G E +RE + E Sbjct 552 LYGDKITPSMAKAIGETERRREKQQKYNEE 581 >sp|B4SZK1|UVRB_SALNS UvrABC system protein B OS=Salmonella newport (strain SL254) OX=423368 GN=uvrB PE=3 SV=1 Length=673 Score = 82.5 bits (202), Expect = 5e-15, Method: Composition-based stats. Identities = 31/150 (21%), Positives = 62/150 (41%), Gaps = 29/150 (19%) Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R ++ T T++ A L +L++ G + + ++ E+I+ Sbjct 446 NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + + A Sbjct 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI 551 Query 482 VATE----------GSRELKRELINEALET 501 + + G E +RE + E Sbjct 552 LYGDKITPSMAKAIGETERRREKQQKYNEE 581 >sp|B4TC52|UVRB_SALHS UvrABC system protein B OS=Salmonella heidelberg (strain SL476) OX=454169 GN=uvrB PE=3 SV=1 Length=673 Score = 82.5 bits (202), Expect = 5e-15, Method: Composition-based stats. Identities = 31/150 (21%), Positives = 62/150 (41%), Gaps = 29/150 (19%) Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R ++ T T++ A L +L++ G + + ++ E+I+ Sbjct 446 NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + + A Sbjct 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI 551 Query 482 VATE----------GSRELKRELINEALET 501 + + G E +RE + E Sbjct 552 LYGDKITPSMAKAIGETERRREKQQKYNEE 581 >sp|B5R765|UVRB_SALG2 UvrABC system protein B OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) OX=550538 GN=uvrB PE=3 SV=1 Length=673 Score = 82.5 bits (202), Expect = 5e-15, Method: Composition-based stats. Identities = 31/150 (21%), Positives = 62/150 (41%), Gaps = 29/150 (19%) Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R ++ T T++ A L +L++ G + + ++ E+I+ Sbjct 446 NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + + A Sbjct 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI 551 Query 482 VATE----------GSRELKRELINEALET 501 + + G E +RE + E Sbjct 552 LYGDKITPSMAKAIGETERRREKQQKYNEE 581 >sp|B5QX69|UVRB_SALEP UvrABC system protein B OS=Salmonella enteritidis PT4 (strain P125109) OX=550537 GN=uvrB PE=3 SV=1 Length=673 Score = 82.5 bits (202), Expect = 5e-15, Method: Composition-based stats. Identities = 31/150 (21%), Positives = 62/150 (41%), Gaps = 29/150 (19%) Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R ++ T T++ A L +L++ G + + ++ E+I+ Sbjct 446 NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + + A Sbjct 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI 551 Query 482 VATE----------GSRELKRELINEALET 501 + + G E +RE + E Sbjct 552 LYGDKITPSMAKAIGETERRREKQQKYNEE 581 >sp|B5FP65|UVRB_SALDC UvrABC system protein B OS=Salmonella dublin (strain CT_02021853) OX=439851 GN=uvrB PE=3 SV=1 Length=673 Score = 82.5 bits (202), Expect = 5e-15, Method: Composition-based stats. Identities = 31/150 (21%), Positives = 62/150 (41%), Gaps = 29/150 (19%) Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R ++ T T++ A L +L++ G + + ++ E+I+ Sbjct 446 NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + + A Sbjct 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI 551 Query 482 VATE----------GSRELKRELINEALET 501 + + G E +RE + E Sbjct 552 LYGDKITPSMAKAIGETERRREKQQKYNEE 581 >sp|Q57RF9|UVRB_SALCH UvrABC system protein B OS=Salmonella choleraesuis (strain SC-B67) OX=321314 GN=uvrB PE=3 SV=1 Length=673 Score = 82.5 bits (202), Expect = 5e-15, Method: Composition-based stats. Identities = 31/150 (21%), Positives = 62/150 (41%), Gaps = 29/150 (19%) Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R ++ T T++ A L +L++ G + + ++ E+I+ Sbjct 446 NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + + A Sbjct 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI 551 Query 482 VATE----------GSRELKRELINEALET 501 + + G E +RE + E Sbjct 552 LYGDKITPSMAKAIGETERRREKQQKYNEE 581 >sp|B5F076|UVRB_SALA4 UvrABC system protein B OS=Salmonella agona (strain SL483) OX=454166 GN=uvrB PE=3 SV=1 Length=673 Score = 82.5 bits (202), Expect = 5e-15, Method: Composition-based stats. Identities = 31/150 (21%), Positives = 62/150 (41%), Gaps = 29/150 (19%) Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R ++ T T++ A L +L++ G + + ++ E+I+ Sbjct 446 NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + + A Sbjct 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI 551 Query 482 VATE----------GSRELKRELINEALET 501 + + G E +RE + E Sbjct 552 LYGDKITPSMAKAIGETERRREKQQKYNEE 581 >sp|B5BC27|UVRB_SALPK UvrABC system protein B OS=Salmonella paratyphi A (strain AKU_12601) OX=554290 GN=uvrB PE=3 SV=1 Length=673 Score = 82.5 bits (202), Expect = 5e-15, Method: Composition-based stats. Identities = 31/150 (21%), Positives = 62/150 (41%), Gaps = 29/150 (19%) Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R ++ T T++ A L +L++ G + + ++ E+I+ Sbjct 446 NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + + A Sbjct 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI 551 Query 482 VATE----------GSRELKRELINEALET 501 + + G E +RE + E Sbjct 552 LYGDKITPSMAKAIGETERRREKQQKYNEE 581 >sp|Q5PG52|UVRB_SALPA UvrABC system protein B OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) OX=295319 GN=uvrB PE=3 SV=1 Length=673 Score = 82.5 bits (202), Expect = 5e-15, Method: Composition-based stats. Identities = 31/150 (21%), Positives = 62/150 (41%), Gaps = 29/150 (19%) Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R ++ T T++ A L +L++ G + + ++ E+I+ Sbjct 446 NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + + A Sbjct 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI 551 Query 482 VATE----------GSRELKRELINEALET 501 + + G E +RE + E Sbjct 552 LYGDKITPSMAKAIGETERRREKQQKYNEE 581 >sp|Q5JGV6|HELS_THEKO ATP-dependent DNA helicase Hel308 OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) OX=69014 GN=hel308 PE=3 SV=1 Length=1125 Score = 82.9 bits (203), Expect = 5e-15, Method: Composition-based stats. Identities = 43/170 (25%), Positives = 66/170 (39%), Gaps = 14/170 (8%) Query 7 QWEVIMPA-LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q E + LEGKN+++ +PT +GKT + V L +G K V LV L + Sbjct 28 QAEALKSGVLEGKNLVLAIPTASGKTLVSEIVMVNKL-LSEGGKAVYLVPLKALAEEKYR 86 Query 66 EFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF 125 EF+ V +GD + +D+++ TAE L + Sbjct 87 EFKEWEVLGLRVAATTGDYDSTDEW---LGRYDIIVATAEKFDSLL----RHGASWIKDV 139 Query 126 SLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGA 175 L+V DE H + L L +A Q+L L+A+ G Sbjct 140 KLVVADEVHL-IGSYDRGATLEMILTHMLGKA----QILALSATVGNAEE 184 Score = 37.1 bits (84), Expect = 0.66, Method: Composition-based stats. Identities = 14/94 (15%), Positives = 34/94 (36%), Gaps = 21/94 (22%) Query 365 SNSPRGIIFTRTRQSAH--------------------SLLLWLQQQQGLQTVDIRAQLLI 404 + ++F TR+SA L + + T + + L Sbjct 236 KKGKQALVFVNTRRSAEKEAISLSSKVSKLLTKPETRRLEELISSIEDNPTTEKLKRALK 295 Query 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT 438 G G + +++ ++ + F++G + ++ AT Sbjct 296 G-GVAFHHAGLSRAERTLIEDAFRNGLIKVITAT 328 >sp|A2C5B3|UVRB_PROM1 UvrABC system protein B OS=Prochlorococcus marinus (strain NATL1A) OX=167555 GN=uvrB PE=3 SV=1 Length=678 Score = 82.5 bits (202), Expect = 5e-15, Method: Composition-based stats. Identities = 36/184 (20%), Positives = 79/184 (43%), Gaps = 24/184 (13%) Query 338 LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD 397 L L P + +++ L +++ +S + R ++ T T++ A L +L + + Sbjct 417 LDPLVEVRPTHGQVDDLLFEIRK--RASKNQRILVTTLTKRMAEDLTDYLSENK------ 468 Query 398 IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG 457 IR + L + + ++ E+IQ + G ++LV ++ EGLD+P ++VV Sbjct 469 IRVRYL--------HSEIHSIERIEIIQDLRLGEYDVLVGVNLLREGLDLPEVSLVVILD 520 Query 458 -----LLTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQK 512 L + S++Q GRA A + + ++ + ET + + + Sbjct 521 ADKEGFLRAQRSLIQTIGRAARHVEGLALLYAD---KMTDSMAKAISETERRREIQNIYN 577 Query 513 MDQA 516 ++ Sbjct 578 IEHG 581 >sp|A9MJE1|UVRB_SALAR UvrABC system protein B OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) OX=41514 GN=uvrB PE=3 SV=1 Length=673 Score = 82.5 bits (202), Expect = 5e-15, Method: Composition-based stats. Identities = 31/150 (21%), Positives = 62/150 (41%), Gaps = 29/150 (19%) Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R ++ T T++ A L +L++ G + + ++ E+I+ Sbjct 446 NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + + A Sbjct 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI 551 Query 482 VATE----------GSRELKRELINEALET 501 + + G E +RE + E Sbjct 552 LYGDKITPSMAKAIGETERRREKQQKYNEE 581 >sp|A6T6L9|UVRB_KLEP7 UvrABC system protein B OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) OX=272620 GN=uvrB PE=3 SV=1 Length=673 Score = 82.5 bits (202), Expect = 5e-15, Method: Composition-based stats. Identities = 31/150 (21%), Positives = 61/150 (41%), Gaps = 29/150 (19%) Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R ++ T T++ A L +L++ G + + ++ E+I+ Sbjct 446 NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + + A Sbjct 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI 551 Query 482 VATE----------GSRELKRELINEALET 501 + + G E +RE E Sbjct 552 LYGDKITPSMAKAIGETERRREKQQRYNEE 581 >sp|Q9NUL7|DDX28_HUMAN Probable ATP-dependent RNA helicase DDX28 OS=Homo sapiens OX=9606 GN=DDX28 PE=1 SV=2 Length=540 Score = 82.2 bits (201), Expect = 5e-15, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 43/131 (33%), Gaps = 17/131 (13%) Query 350 KLEMLEKIL---QRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA 406 K+ L IL R + S ++F + + + L L + Sbjct 377 KVAELVHILKHRDRAERTGPSGTVLVFCNSSSTVNWLGYILDDHK--------------I 422 Query 407 GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV 466 + M + + Q FQ + ++L+ T +A GLD +VV Y + Sbjct 423 QHLRLQGQMPALMRVGIFQSFQKSSRDILLCTDIASRGLDSTGVELVVNYDFPPTLQDYI 482 Query 467 QARGRARADQS 477 GR S Sbjct 483 HRAGRVGRVGS 493 Score = 50.6 bits (119), Expect = 4e-05, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 50/131 (38%), Gaps = 17/131 (13%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRHLE--------TVDGAKVVVLVNRVHLVTQHGEE 66 L G++++ TG+GKT + + L + + +VLV L Q Sbjct 163 LRGRHVVCAAETGSGKTLSYLLPLLQRLLGQPSLDSLPIPAPRGLVLVPSREL-AQQVRA 221 Query 67 FRRMLDGRWT--VTTLSGDMGPRAGFGHLAR--CHDLLICTAELLQMALTSPEEEEHVEL 122 + L V L G G R L+R D+L+ T L AL S + L Sbjct 222 VAQPLGRSLGLLVRDLEGGHGMRRIRLQLSRQPSADVLVATPGALWKALKSRL----ISL 277 Query 123 TVFSLIVVDEC 133 S +V+DE Sbjct 278 EQLSFLVLDEA 288 >sp|A5E3K3|DBP4_LODEL ATP-dependent RNA helicase DBP4 OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) OX=379508 GN=DBP4 PE=3 SV=1 Length=775 Score = 82.5 bits (202), Expect = 5e-15, Method: Composition-based stats. Identities = 36/181 (20%), Positives = 62/181 (34%), Gaps = 26/181 (14%) Query 331 FDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIF---TRTRQSAHSLLLWL 387 L P N KL++L ++ + ++F ++ Q A+ L Sbjct 261 ISAIPESLDQYYVKVPLNEKLDVLWSFIKSHLK----SKILVFFSSSKQVQYAYETFRTL 316 Query 388 QQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDI 447 Q L + R + Q + E KF L AT + GLD Sbjct 317 QPGIPLMKLYGRHK---------------QTSRLETTVKFSQAQHACLFATDIVARGLDF 361 Query 448 PHCNVVVRYGLLTNEISMVQARGR----ARADQSVYAFVATEGSRELKRELINEALETLM 503 P + V++ + + V GR R +S+ + TE LKR +++ +M Sbjct 362 PAIDWVIQVDCPEDVATYVHRVGRSARFGRQGKSLLMLLPTEEDGMLKRMKVHKIEPKMM 421 Query 504 E 504 Sbjct 422 N 422 Score = 58.7 bits (140), Expect = 1e-07, Method: Composition-based stats. Identities = 54/363 (15%), Positives = 111/363 (31%), Gaps = 35/363 (10%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAY------VAKRHLETVDGAKVVVLVNRVHLV 60 Q + I AL+G++++ TG+GKT A + + + DG +++ L Sbjct 75 QKKSIPVALKGEDLMGTARTGSGKTL-AFLIPVIEILLRNDITEYDGLAALIVSPTRELA 133 Query 61 TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 Q E ++ L ++L+ T + L + Sbjct 134 VQIFEVLAKIGKYNSFSAGLVTGGKDVQYEKERISRMNILVGTPGRISQHLNESVG---M 190 Query 121 ELTVFSLIVVDECHHT-----------HKDT-VYNVIMSQYLELKLQRAQPLPQVLGLTA 168 E + ++V+DE + + Q L + L LT Sbjct 191 ETSNLQVLVLDEADRCLDMGFRKQIDNILNHLPRTRQTLLFSATHTDSVQDLAR-LSLTN 249 Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 G +S D + + +LD + + P N + + + + S Sbjct 250 PKRIGTSSDQD-----ISAIPESLDQYYVKVPLNEKLDVLWSFIKSHLKSKILVFFSSSK 304 Query 229 FGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN 288 + + + + +L +G +Q +L + Q ++A + Sbjct 305 QVQYAYETFRTLQPGIPLMKL---YGRH---KQTSRLETTVKFSQAQHACLFATDIVARG 358 Query 289 DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPEN 348 D V VD + + HR + + LL L ++ + Sbjct 359 LDFPAIDWVIQVDCPEDVATYVHRVG-RSARFGRQGKSLLMLLPTEEDGMLKRMKVHKIE 417 Query 349 PKL 351 PK+ Sbjct 418 PKM 420 >sp|Q5AK59|HAS1_CANAL ATP-dependent RNA helicase HAS1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=HAS1 PE=3 SV=1 Length=565 Score = 82.2 bits (201), Expect = 5e-15, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 55/170 (32%), Gaps = 17/170 (10%) Query 357 ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT 416 +L + + I+F + S L +D+ L G Sbjct 344 LLFSFLKRNVKKKIIVFLSSCNSVKFYSELL------NYIDLPVLDLHG--------KQK 389 Query 417 QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR-- 473 Q+ + +F + +LV T VA GLDIP + +V++ + + GR AR Sbjct 390 QQKRTNTFFEFCNAKQGILVCTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGT 449 Query 474 ADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIR 523 + T R L + + A Q++ I+ Sbjct 450 QGKGKSLMFLTPSELGFLRYLKAAKVPLNEYEFPANKIANIQSQLTKLIK 499 Score = 54.0 bits (128), Expect = 4e-06, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 53/135 (39%), Gaps = 10/135 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA----AAYVAKRH-LETVDGAKVVVLVNRVHLVT 61 Q + I P L G++++ TG+GKT A A + ++ +G V+++ L Sbjct 135 QAKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIELLYSLKIKPRNGTAVIIITPTRELAL 194 Query 62 QHGEEFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 Q R ++ + G R LA+ +LL+ T L L + + Sbjct 195 QIFGVARELMQFHSQTCGIVIGGADRRQEATKLAKGVNLLVATPGRLLDHLKNTQ----F 250 Query 121 ELTVFSLIVVDECHH 135 + +V+DE Sbjct 251 VFSNLKALVIDEADR 265 >sp|Q8Z889|UVRB_SALTI UvrABC system protein B OS=Salmonella typhi OX=90370 GN=uvrB PE=3 SV=1 Length=673 Score = 82.5 bits (202), Expect = 5e-15, Method: Composition-based stats. Identities = 31/150 (21%), Positives = 62/150 (41%), Gaps = 29/150 (19%) Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R ++ T T++ A L +L++ G + + ++ E+I+ Sbjct 446 NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + + A Sbjct 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI 551 Query 482 VATE----------GSRELKRELINEALET 501 + + G E +RE + E Sbjct 552 LYGDKITPSMAKAIGETERRREKQQKYNEE 581 >sp|A1STV6|UVRB_PSYIN UvrABC system protein B OS=Psychromonas ingrahamii (strain DSM 17664 / CCUG 51855 / 37) OX=357804 GN=uvrB PE=3 SV=1 Length=670 Score = 82.5 bits (202), Expect = 5e-15, Method: Composition-based stats. Identities = 32/181 (18%), Positives = 70/181 (39%), Gaps = 21/181 (12%) Query 307 QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSN 366 Q Y + +I ++ ++ L + P +++ L + + Sbjct 388 QTIYVSATPSDYEINKSQGEIIRQVIRPTGLLDPVIEVRPVTTQVDDLLSEINIRLPLKE 447 Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 R ++ T T++ A L +L + G + + ++ E+I+ Sbjct 448 --RVLVTTLTKRMAEDLTDYLHE--------------HGIKARYLHSDVNTVERVEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++L+ ++ EGLDIP ++V L +E S++Q GRA + + A Sbjct 492 LRLGIFDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTMGRAARNLNGKAI 551 Query 482 V 482 + Sbjct 552 L 552 >sp|Q0UR48|HAS1_PHANO ATP-dependent RNA helicase HAS1 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) OX=321614 GN=HAS1 PE=3 SV=1 Length=610 Score = 82.2 bits (201), Expect = 5e-15, Method: Composition-based stats. Identities = 49/299 (16%), Positives = 99/299 (33%), Gaps = 44/299 (15%) Query 253 FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHR 312 G + KL++ L R+ HL + + +D + + Sbjct 238 IGGANRRAEAEKLAKGVNLLIATPGRLLD-HLHNTQGFVFKNLKSLIIDEADRILEVGFE 296 Query 313 EHVTKTQILCAERRLLALFDD----RKNELAHLAT----------HGPENPKLEMLE--- 355 + + + R LF + +LA ++ + E+ +E LE Sbjct 297 DEMRSIIKILPTDRQTMLFSATQTTKVEDLARISLKAGPLYINVDYRKEHSTVEGLEQGY 356 Query 356 ---------KILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA 406 ++L + I+F + S L +D+ L G Sbjct 357 VICDSDTRFRLLFSFLKKHQKKKVIVFFSSCNSVKFYAELL------NYIDLPVLELHG- 409 Query 407 GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV 466 + Q+ + +F + L+ T VA GLDIP + V+++ + + Sbjct 410 -------KLKQQARTNRFFEFCNAQSGTLICTDVAARGLDIPEVDWVIQFDPPDDPRDYI 462 Query 467 QARGRARAD--QSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMD-QAEYQAKI 522 GR + + S +L+ EA L+E + A + ++ Q++ +A I Sbjct 463 HRVGRTARGSEGKGRSLMFLLPSEIGFLKLLKEARVPLVEFELPANKILNIQSQLEALI 521 Score = 55.2 bits (131), Expect = 2e-06, Method: Composition-based stats. Identities = 32/136 (24%), Positives = 53/136 (39%), Gaps = 11/136 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRH------LETVDGAKVVVLVNRVHLV 60 Q + I P L GK+++ TG+GKT A + + +G V+V+ L Sbjct 158 QRKAIPPLLSGKDVLGAAKTGSGKTL-AFLIPAIEMLSSMRFKPRNGTGVIVVSPTRELA 216 Query 61 TQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 Q R +++ + G RA LA+ +LLI T L L + + Sbjct 217 LQIFGVARELMEKHSQTFGIVIGGANRRAEAEKLAKGVNLLIATPGRLLDHLHNTQGFVF 276 Query 120 VELTVFSLIVVDECHH 135 L +++DE Sbjct 277 KNLKS---LIIDEADR 289 >sp|Q7NTA7|UVRB_CHRVO UvrABC system protein B OS=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / CCUG 213 / NBRC 12614 / NCIMB 9131 / NCTC 9757 / MK) OX=243365 GN=uvrB PE=3 SV=1 Length=670 Score = 82.5 bits (202), Expect = 5e-15, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 79/200 (40%), Gaps = 22/200 (11%) Query 346 PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 P +++ L ++ + R ++ T T++ A L + + G Sbjct 431 PVATQVDDLLSEIRE--RMARGERVLVTTLTKRMAEQLADYYTE--------------HG 474 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLT 460 + + ++ E+I+ + G ++L+ ++ EGLDIP ++V L Sbjct 475 VKVRYLHSDIDTVERVEIIRDLRLGMFDVLIGINLLREGLDIPEVSLVAILDADKEGFLR 534 Query 461 NEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQ-AVAAVQKMDQAEYQ 519 +E S++Q GRA + A + + + R+ ++E +Q A A + + Sbjct 535 SERSLIQTIGRAARNLRGKALLYADRITDSMRKAMDETERRRAKQMAFNAEHGIVPKGVE 594 Query 520 AKIRDLQQAALTKRAAQAAQ 539 KI+D+ + A + Sbjct 595 KKIKDIIDGVYSVEAERKKL 614 >sp|Q1E7Y4|MAK5_COCIM ATP-dependent RNA helicase MAK5 OS=Coccidioides immitis (strain RS) OX=246410 GN=MAK5 PE=3 SV=1 Length=783 Score = 82.5 bits (202), Expect = 5e-15, Method: Composition-based stats. Identities = 31/151 (21%), Positives = 59/151 (39%), Gaps = 18/151 (12%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 R ++FT + + L LQ + + M Q+ + +++F Sbjct 502 RTLVFTNSISAVRRLTQLLQNLNLPTF--------------ALHSSMAQKARLRSVERFS 547 Query 429 DGTLN---LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVAT 484 + + +LVAT VA GLDI +++V Y + + V GR ARA S + + Sbjct 548 SLSSDPSSILVATDVAARGLDIKGIDLIVHYHIPRTADTYVHRSGRTARASASGKSILIC 607 Query 485 EGSRELKRELINEALETLMEQAVAAVQKMDQ 515 + + + + + A KM++ Sbjct 608 APEETTGVARLVAKIHSNKKDSSATESKMEK 638 Score = 40.6 bits (93), Expect = 0.050, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 49/142 (35%), Gaps = 24/142 (17%) Query 15 LEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAK---------------VVVLVNRVH 58 L+G ++I TG+GKT A + + L G + ++L Sbjct 225 LQGHDVIGKASTGSGKTLAFGIPIVEYFLGKYRGGRAPTASEERESTKEPMALILSPTRE 284 Query 59 LVTQ---HGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP 114 L Q H + + + T++G + L D++I T L + S Sbjct 285 LAHQLNKHLTDLVNHAPNTQVRIATVTGGLSIYKQ-QRLLADADIIIATPGRLWEVVGSM 343 Query 115 EEEEHV-ELTVFSLIVVDECHH 135 + +L +V+DE Sbjct 344 T--GFLSKLKKIRFLVIDEADR 363 >sp|P58174|UVRB_MYCPU UvrABC system protein B OS=Mycoplasmopsis pulmonis (strain UAB CTIP) OX=272635 GN=uvrB PE=3 SV=1 Length=657 Score = 82.2 bits (201), Expect = 6e-15, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 83/198 (42%), Gaps = 21/198 (11%) Query 309 FYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSP 368 Y ++ +I A++++ + L + + ++E + LQ+Q + + Sbjct 387 IYISATPSEYEIEKADQKITKMIIRPTGLLDPIIETRSKTNQVEDIYDELQKQ--KAKNE 444 Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 R +I T T++ + L + Q++ G + + ++ E+++K + Sbjct 445 RTLILTTTKRFSEELTRYFQEK--------------GEKVAYIHSDHKTFERNEILRKLR 490 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAFVA 483 G +L++ ++ EG+D+P ++V+ L N S++Q GRA + S Sbjct 491 KGVYDLVIGINLLREGIDLPEVSLVIILDADKESFLRNTKSLIQIVGRASRNSSGKVIFY 550 Query 484 TEGSRELKRELINEALET 501 + + RE I + E Sbjct 551 ADFVSKSMRETIEDNFEK 568 >sp|Q0DVX2|RH50_ORYSJ DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0108600 PE=2 SV=2 Length=641 Score = 82.2 bits (201), Expect = 6e-15, Method: Composition-based stats. Identities = 35/169 (21%), Positives = 62/169 (37%), Gaps = 19/169 (11%) Query 348 NPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG 407 + K L KI++ S + IIF ++ + L++ + I+ Sbjct 486 SNKKSALVKIIEE----SPVRKTIIFCNKIETCRKVENALRRVDRKAS-QIKVLPF---- 536 Query 408 NSSQSTHMTQRDQQEVIQKF---QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 + Q+ + I++F Q LV T A G+D + N VV + + Sbjct 537 ----HAALDQQQRIANIKEFLNKQTADSMFLVCTDRASRGIDFANVNHVVLFDYPRDPSE 592 Query 465 MVQARGRA--RADQSVYAFVATEGSR-ELKRELINEALETLMEQAVAAV 510 V+ GR A + AFV G + L R ++ ++ V V Sbjct 593 YVRRVGRTARGASGNGKAFVFAVGKQVSLARRVMERNIKGHPLHDVPCV 641 Score = 56.3 bits (134), Expect = 7e-07, Method: Composition-based stats. Identities = 71/409 (17%), Positives = 132/409 (32%), Gaps = 50/409 (12%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETV----------DGAKVVVLVNR 56 Q P LEGK+ II +G+GKT A ++L +VVVL Sbjct 267 QAMAYRPVLEGKSCIIGDQSGSGKTLAYLCPVVQNLRKEEVEGLHRSSPRNPRVVVLTPT 326 Query 57 VHLVTQHGEEFRRMLDG--RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP 114 L +Q R + + +G + L + D+LI T L Sbjct 327 AELASQVLNNCRSISKSGVPFRSMVATGGFRQKTQLESLDQELDVLIATPGRFLYLL--- 383 Query 115 EEEEHVELTVFSLIVVDECHHTHKDTVYNVI-MSQYLELKLQRAQPLPQVLGLTAS-PGT 172 +E V+L +V+DE D +Y Q L + A Q L +TA+ P Sbjct 384 -QEGFVQLNNLRCVVLDEV-----DILYGEESFEQVLHQLITVAPLTTQYLFVTATLPLD 437 Query 173 GGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQ-EHSQQPCKQYNLCHRRSQDPFGD 231 + D IM P + E C + + + F + Sbjct 438 IYNKV----------VETFPDCELIMGPGVHRTSSRLEEILVDCSGDDNEEKNPETAFSN 487 Query 232 LLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDAL 291 L+ I E P E K+ A + ++ L Sbjct 488 KKSALVKIIE---ESPVRKTIIFCNKIE-TCRKVENALRRVDRKASQI---------KVL 534 Query 292 LIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKL 351 H + +A +++F +++ ++C +R + N + + Sbjct 535 PFHAALDQQQRIANIKEFLNKQTADSMFLVCTDRASRGIDFANVNHVVLFDYPRDPS--- 591 Query 352 EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRA 400 E + ++ + +S + + +F +Q + + + + +G D+ Sbjct 592 EYVRRVGRTARGASGNGKAFVFAVGKQVSLARRVMERNIKGHPLHDVPC 640 >sp|P72174|UVRB_PSEAE UvrABC system protein B OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=uvrB PE=3 SV=2 Length=670 Score = 82.2 bits (201), Expect = 6e-15, Method: Composition-based stats. Identities = 34/180 (19%), Positives = 73/180 (41%), Gaps = 20/180 (11%) Query 365 SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI 424 + R ++ T T++ A L +L D+R + L + + ++ E+I Sbjct 442 AKDERVLVTTLTKRMAEDLTDYLGDH------DVRVRYL--------HSDIDTVERVEII 487 Query 425 QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVY 479 + + G ++LV ++ EGLD+P ++V L +E S++Q GRA + Sbjct 488 RDLRAGAFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLHGK 547 Query 480 AFVATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA 538 A + + + ++R + + A + + I+D+ + A+ A Sbjct 548 AILYADNVTGSMQRAIDETERRRAKQIAFNEAHGIVPKGVRKDIKDILEGAVVPGARGKR 607 Score = 37.5 bits (85), Expect = 0.43, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 26/75 (35%), Gaps = 9/75 (12%) Query 8 WEVIMPALEGKNIIIWLPTGAGKTR-AAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEE 66 E + L + ++ TG+GKT A +A+ +VL L Q E Sbjct 24 VEGLEAGLSHQTLLGV--TGSGKTFSIANVIAQV------QRPTLVLAPNKTLAAQLYGE 75 Query 67 FRRMLDGRWTVTTLS 81 F+ +S Sbjct 76 FKTFFPHNSVEYFVS 90 >sp|P56996|UVRB_NEIMA UvrABC system protein B OS=Neisseria meningitidis serogroup A / serotype 4A (strain DSM 15465 / Z2491) OX=122587 GN=uvrB PE=3 SV=1 Length=675 Score = 82.2 bits (201), Expect = 6e-15, Method: Composition-based stats. Identities = 30/189 (16%), Positives = 74/189 (39%), Gaps = 20/189 (11%) Query 365 SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI 424 R ++ T T++ A L + + +G + + ++ E+I Sbjct 449 QKGERVLVTTLTKRMAEQLTDYYSE--------------LGIKVRYLHSDIDTVERVEII 494 Query 425 QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVY 479 + + G ++LV ++ EGLDIP ++V L + S++Q GRA + + Sbjct 495 RDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAARNVNGV 554 Query 480 AFVATEGSRELKRELINEALETLMEQ-AVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA 538 A + + + + I+E +Q + + + +++D+ + + Sbjct 555 AILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEEDSGKG 614 Query 539 QRENQRQQF 547 +R+ + + Sbjct 615 RRQGKNKVK 623 >sp|B2VBW9|UVRB_ERWT9 UvrABC system protein B OS=Erwinia tasmaniensis (strain DSM 17950 / CFBP 7177 / CIP 109463 / NCPPB 4357 / Et1/99) OX=465817 GN=uvrB PE=3 SV=1 Length=674 Score = 82.2 bits (201), Expect = 6e-15, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 70/185 (38%), Gaps = 20/185 (11%) Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R ++ T++ A L +L + G + + ++ E+I+ Sbjct 446 NERVLVTVLTKRMAEDLTEYLTE--------------HGERVRYLHSDIDTVERVEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + + A Sbjct 492 LRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAI 551 Query 482 VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR 540 + + + + R + +Q + KI D+ + +A R Sbjct 552 LYGDKITPSMARAIGETERRREKQQLHNEEHGIVPQGLNKKISDILELGQGLAKNKAKPR 611 Query 541 ENQRQ 545 + + Sbjct 612 NMKGR 616 >sp|B5XYX2|UVRB_KLEP3 UvrABC system protein B OS=Klebsiella pneumoniae (strain 342) OX=507522 GN=uvrB PE=3 SV=1 Length=673 Score = 82.2 bits (201), Expect = 6e-15, Method: Composition-based stats. Identities = 31/150 (21%), Positives = 61/150 (41%), Gaps = 29/150 (19%) Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R ++ T T++ A L +L++ G + + ++ E+I+ Sbjct 446 NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + + A Sbjct 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNINGKAI 551 Query 482 VATE----------GSRELKRELINEALET 501 + + G E +RE E Sbjct 552 LYGDKITPSMAKAIGETERRREKQQRYNEE 581 >sp|P47319|UVRB_MYCGE UvrABC system protein B OS=Mycoplasma genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37) OX=243273 GN=uvrB PE=3 SV=1 Length=656 Score = 82.2 bits (201), Expect = 6e-15, Method: Composition-based stats. Identities = 41/260 (16%), Positives = 94/260 (36%), Gaps = 34/260 (13%) Query 307 QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSN 366 + Y +I ++ ++ + + P++ ++E L + + Q N Sbjct 391 KVIYVSATPRDKEISLSQNNVIEQLVRPTYLVDPIIVVKPKDNQVEDLIEEIINQ--RQN 448 Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R + T + A +L +L++++ I+ + + ++ +I Sbjct 449 NTRTFVTVLTIKMAENLTEYLKERK------IKVAYI--------HKDIKALERLLLIND 494 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G LV ++ EGLD+P +V + L +E S++Q GRA ++ Sbjct 495 LRRGEYECLVGINLLREGLDVPEVALVCIFDADIPGLPRDERSLIQIIGRAARNEHGRVV 554 Query 482 VATEG---------SRELKRELINEALETLMEQAVAAVQK----MDQAEYQAKIRDLQQA 528 + +R + L + V K + + +AK + A Sbjct 555 MYANHVTEQMQKAIDETKRRRTVQMEYNKLHNKTPKTVVKPLTFVQPIKLKAKSNAEKNA 614 Query 529 ALTKRAAQAAQRENQRQQFP 548 AL K+ + ++ Q + Sbjct 615 ALIKQLTKEMKKAAANQNYE 634 >sp|E7F8F4|ASCC3_DANRE Activating signal cointegrator 1 complex subunit 3 OS=Danio rerio OX=7955 GN=ascc3 PE=3 SV=2 Length=1534 Score = 82.5 bits (202), Expect = 7e-15, Method: Composition-based stats. Identities = 42/177 (24%), Positives = 73/177 (41%), Gaps = 20/177 (11%) Query 7 QWEVIMPALE-GKNIIIWLPTGAGKTRAAAYVAKRHLET---------VDGAKVVVLVNR 56 Q V A +N++I PTGAGKT A + D K+V + Sbjct 78 QSIVFETAYNTNENLLICAPTGAGKTNIAMLTILHEIRQHLQPGGVIRKDQFKIVYVAPM 137 Query 57 VHLVTQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE 115 L + F + L+ V L+GDM G +L+ T E + + + Sbjct 138 KALAAEMTNYFSKRLEPLGIAVKELTGDMQLTKGE---ILRTQMLVTTPEKW--DVVTRK 192 Query 116 EEEHVELTVFS-LIVVDECH--HTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS 169 V L+ L+++DE H H + V ++++ L ++ Q + ++LGL+A+ Sbjct 193 SVGDVALSQVVRLLILDEVHLLHEDRGPVLESLVARTLRQ-VESTQSMIRILGLSAT 248 Score = 69.4 bits (168), Expect = 9e-11, Method: Composition-based stats. Identities = 35/152 (23%), Positives = 60/152 (39%), Gaps = 8/152 (5%) Query 19 NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEE--FRRMLDGRWT 76 N+++ PTG+GKT AA R +KVV + LV + E+ R Sbjct 906 NVLLGAPTGSGKTIAAEMAIFRVFNMYPTSKVVYIAPLKALVRERIEDWKIRIEEKLGRK 965 Query 77 VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHT 136 V L+GD P DL++ T E S + +V+ +++++DE H Sbjct 966 VVELTGDNTPDM---RAIAQADLIVTTPEKWDGVSRSWQNRSYVQ--KVAILIIDEIHLL 1020 Query 137 HKD-TVYNVIMSQYLELKLQRAQPLPQVLGLT 167 +D ++ +V+GL+ Sbjct 1021 GEDRGPVLEVIVSRTNFISSHTSKTVRVVGLS 1052 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 33/175 (19%), Positives = 66/175 (38%), Gaps = 34/175 (19%) Query 357 ILQRQFSSSNSPRGIIFT----RTRQSAHSLLLWLQQQQGLQ-------------TVDIR 399 + Q + S + +IF +TR +A L+ +L + + IR Sbjct 1107 VFQAIRTHSPAKPVLIFVSSRRQTRLTALDLIAFLATEDDPKQWLHQDEREMTDIIATIR 1166 Query 400 AQLL---IGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVR- 455 L + G + +RD++ V + F + + +L+ATS G++ P V+V+ Sbjct 1167 ESNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKIQVLIATSTLAWGVNFPAHLVIVKG 1226 Query 456 ---YG-LLTNEISM-----VQARGRARA----DQSVYAFVATEGSRELKRELINE 497 Y + +Q GRA DQ + + ++ ++ + E Sbjct 1227 TEYYDGKTRRYVDYPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFYKKFLYE 1281 >sp|O73946|HELS_PYRFU ATP-dependent DNA helicase Hel308 OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) OX=186497 GN=hel308 PE=1 SV=1 Length=720 Score = 82.2 bits (201), Expect = 7e-15, Method: Composition-based stats. Identities = 42/170 (25%), Positives = 65/170 (38%), Gaps = 14/170 (8%) Query 7 QWEVIMPA-LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGE 65 Q E + LEGKN +I +PT +GKT A + G K V +V L + + Sbjct 28 QAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRI-LTQGGKAVYIVPLKALAEEKFQ 86 Query 66 EFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVF 125 EF+ V +GD + + +D++I TAE L + Sbjct 87 EFQDWEKIGLRVAMATGDYDSKDEW---LGKYDIIIATAEKFDSLL----RHGSSWIKDV 139 Query 126 SLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGA 175 ++V DE H LE+ L Q++GL+A+ G Sbjct 140 KILVADEIHLIGSRD-----RGATLEVILAHMLGKAQIIGLSATIGNPEE 184 Score = 44.0 bits (102), Expect = 0.004, Method: Composition-based stats. Identities = 34/168 (20%), Positives = 58/168 (35%), Gaps = 32/168 (19%) Query 370 GIIFTRTRQSAHSLLLWLQQQQG--LQTVDIRA-----------------QLLIGAGNSS 410 +IF R+ A + L L ++ L +IRA I G + Sbjct 240 ALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAF 299 Query 411 QSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVR-------YGLLTNEI 463 + + ++ V + F+ G + +VAT G++ P V++R +G+ I Sbjct 300 HHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPI 359 Query 464 SMVQAR-GRARAD-----QSVYAFVATEGSRELKRELINEALETLMEQ 505 V GRA ++ RE+ I E L Q Sbjct 360 IEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREVMNHYIFGKPEKLFSQ 407 >sp|Q5F931|UVRB_NEIG1 UvrABC system protein B OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) OX=242231 GN=uvrB PE=3 SV=1 Length=675 Score = 82.2 bits (201), Expect = 7e-15, Method: Composition-based stats. Identities = 29/189 (15%), Positives = 74/189 (39%), Gaps = 20/189 (11%) Query 365 SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI 424 R ++ T T++ A L + + +G + + ++ E+I Sbjct 449 QKGERVLVTTLTKRMAEQLTDYYSE--------------LGIKVRYLHSDIDTVERVEII 494 Query 425 QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVY 479 + + G ++LV ++ EGLDIP ++V L + S++Q GRA + + Sbjct 495 RDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAARNVNGV 554 Query 480 AFVATEGSRELKRELINEALETLMEQ-AVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA 538 A + + + + ++E +Q + + + +++D+ + + Sbjct 555 AILYADKITDSMKAAVDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEEDSGKG 614 Query 539 QRENQRQQF 547 +R+ + + Sbjct 615 RRQGKNKVK 623 >sp|Q829Y6|UVRB_STRAW UvrABC system protein B OS=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NBRC 14893 / NCIMB 12804 / NRRL 8165 / MA-4680) OX=227882 GN=uvrB PE=3 SV=1 Length=713 Score = 82.2 bits (201), Expect = 7e-15, Method: Composition-based stats. Identities = 32/190 (17%), Positives = 71/190 (37%), Gaps = 20/190 (11%) Query 363 SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE 422 + R ++ T T++ A L + + +G + + + E Sbjct 449 RTEKDERVLVTTLTKKMAEDLTDYFLE--------------LGIQVRYLHSDVDTLRRVE 494 Query 423 VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQS 477 ++++ + G ++LV ++ EGLD+P ++V L + S++Q GRA + S Sbjct 495 LLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAARNVS 554 Query 478 VYAFVATEGSRELKRELINEALETLMEQ-AVAAVQKMDQAEYQAKIRDLQQAALTKRAAQ 536 + + + I+E +Q A + +D + KI D+ + Sbjct 555 GQVHMYADKITPAMEKAIDETNRRREKQVAYNKEKGIDPQPLRKKINDIVAQIAREDIDT 614 Query 537 AAQRENQRQQ 546 + +Q Sbjct 615 EQLLGSGYRQ 624 >sp|Q8CK11|UVRB_STRCO UvrABC system protein B OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) OX=100226 GN=uvrB PE=3 SV=1 Length=712 Score = 82.2 bits (201), Expect = 7e-15, Method: Composition-based stats. Identities = 32/190 (17%), Positives = 70/190 (37%), Gaps = 20/190 (11%) Query 363 SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE 422 + R ++ T T++ A L + + +G + + + E Sbjct 449 RTEKDERVLVTTLTKKMAEDLTDYFVE--------------LGIQVRYLHSDVDTLRRVE 494 Query 423 VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQS 477 ++++ + G ++LV ++ EGLD+P ++V L + S++Q GRA + S Sbjct 495 LLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAARNVS 554 Query 478 VYAFVATEGSRELKRELINEALETLMEQ-AVAAVQKMDQAEYQAKIRDLQQAALTKRAAQ 536 + + + I+E +Q A +D + KI D+ + Sbjct 555 GQVHMYADKITPAMEKAIDETNRRREKQVAFNKANGVDPQPLRKKINDIVAQIAREDVDT 614 Query 537 AAQRENQRQQ 546 + +Q Sbjct 615 EQLLGSGYRQ 624 >sp|Q6FPT7|DBP4_CANGA ATP-dependent RNA helicase DBP4 OS=Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DBP4 PE=3 SV=1 Length=765 Score = 82.2 bits (201), Expect = 7e-15, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 67/199 (34%), Gaps = 25/199 (13%) Query 314 HVTKTQILCAERRLLALFDDRKNELAHLATHGPENPK----------LEMLEKILQRQFS 363 T++Q + RL +L D +K + GP PK L +L Sbjct 225 SATQSQSISDLARL-SLTDYKKIGTIDSSEDGPATPKTLQQSYIIADLADKLDVLYSFIK 283 Query 364 SSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEV 423 S + I+F + + H + ++ Q G QR + E Sbjct 284 SHLKTKMIVFFSSSKQVHFVYETFRKMQP------------GISLLHLHGRQKQRARTET 331 Query 424 IQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYA-F 481 + KF L AT V G+D P + V++ + + + GR AR + + Sbjct 332 LDKFFRAQQVCLFATDVVARGIDFPAVDWVIQVDCPEDVDTYIHRVGRAARYGKKGRSLI 391 Query 482 VATEGSRELKRELINEALE 500 + T + + +E Sbjct 392 ILTPQEEAFLTRMAAKKIE 410 Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats. Identities = 22/142 (15%), Positives = 48/142 (34%), Gaps = 10/142 (7%) Query 1 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAY------VAKRHLETVDGAKVVVLV 54 +++ Q + I+ +L+G ++ TG+GKT A + + DG +++ Sbjct 62 IKMTDIQRDSIVTSLQGHDVFGTAKTGSGKTL-AFLVPVLEKLYRERWTEFDGLGALIIS 120 Query 55 NRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP 114 L Q E ++ L ++LI T + + Sbjct 121 PTRELAMQIYEVLVKIGSHTQFSAGLVIGGKDVNFELERIAKINILIGTPGRILQHMDQA 180 Query 115 EEEEHVELTVFSLIVVDECHHT 136 + + ++V+DE Sbjct 181 VG---LNTSNLQMLVLDEADRC 199 >sp|Q50939|UVRB_NEIGO UvrABC system protein B OS=Neisseria gonorrhoeae OX=485 GN=uvrB PE=3 SV=1 Length=675 Score = 81.8 bits (200), Expect = 8e-15, Method: Composition-based stats. Identities = 29/189 (15%), Positives = 74/189 (39%), Gaps = 20/189 (11%) Query 365 SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI 424 R ++ T T++ A L + + +G + + ++ E+I Sbjct 449 QKGERVLVTTLTKRMAEQLTDYYSE--------------LGIKVRYLHSDIDTVERVEII 494 Query 425 QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVY 479 + + G ++LV ++ EGLDIP ++V L + S++Q GRA + + Sbjct 495 RDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAARNVNGV 554 Query 480 AFVATEGSRELKRELINEALETLMEQ-AVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA 538 A + + + + ++E +Q + + + +++D+ + + Sbjct 555 AILYADKITDSMKAAVDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEEDSGKG 614 Query 539 QRENQRQQF 547 +R+ + + Sbjct 615 RRQGKNKVK 623 >sp|E1BNG3|ASCC3_BOVIN Activating signal cointegrator 1 complex subunit 3 OS=Bos taurus OX=9913 GN=ascc3 PE=3 SV=1 Length=2201 Score = 82.5 bits (202), Expect = 8e-15, Method: Composition-based stats. Identities = 41/176 (23%), Positives = 73/176 (41%), Gaps = 19/176 (11%) Query 7 QWEVIMPALE-GKNIIIWLPTGAGKTRAAAYVAKRHLET--------VDGAKVVVLVNRV 57 Q V A +N++I PTGAGKT A + + K+V + Sbjct 481 QSIVFETAYNTNENMLICAPTGAGKTNIAMLTVLHEIRQHFQQGVIKKNEFKIVYVAPMK 540 Query 58 HLVTQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE 116 L + F + L+ V L+GDM + +L+ T E + + + Sbjct 541 ALAAEMTNYFSKRLEPLGIVVKELTGDMQLS---KNEILRTQMLVTTPEKW--DVVTRKS 595 Query 117 EEHVELTVFS-LIVVDECH--HTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS 169 V L+ L+++DE H H + V I+++ L ++ Q + ++LGL+A+ Sbjct 596 VGDVALSQIVKLLILDEVHLLHEDRGPVLESIVARTLRQ-VESTQSMIRILGLSAT 650 Score = 69.1 bits (167), Expect = 1e-10, Method: Composition-based stats. Identities = 54/303 (18%), Positives = 99/303 (33%), Gaps = 15/303 (5%) Query 19 NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEE--FRRMLDGRWT 76 N+++ PTG+GKT AA R +K V + LV + ++ R Sbjct 1344 NVLLGAPTGSGKTVAAELAIFRVFNKYPTSKAVYIAPLKALVRERMDDWKVRIEEKLGKK 1403 Query 77 VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECH-H 135 V L+GD+ P DL++ T E S + +V+ +++++DE H Sbjct 1404 VIELTGDVTPDM---KSIAKADLIVTTPEKWDGVSRSWQNRNYVK--QVTILIIDEIHLL 1458 Query 136 THKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTW 195 + ++ + +++GL S A L +N N Sbjct 1459 GEERGPVLEVIVSRTNFISSHTEKPVRIVGL--STALANARDLADWLNIRQMGLFNFRPS 1516 Query 196 CIMSPQNCCPQLQE---HSQQPCKQYNLCHR--RSQDPFGDLLKKLMDQIHDHLEMPELS 250 P Q + + + RS P +L + + L EL Sbjct 1517 VRPVPLEVHIQGFPGQHYCPRMASMNKPTFQAIRSHSPAKPVLIFVSSRRQTRLTALELI 1576 Query 251 RKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFY 310 T+ +Q + + E + R L L + H + D + F Sbjct 1577 AFLATEEDPKQWLNMDEREMENIIGTIRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFV 1636 Query 311 HRE 313 + + Sbjct 1637 NCK 1639 Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats. Identities = 32/171 (19%), Positives = 64/171 (37%), Gaps = 38/171 (22%) Query 363 SSSNSPRGIIFT----RTRQSAHSLLLWLQQQQGL----------------QTVDIRAQL 402 S S + +IF +TR +A L+ +L ++ D +L Sbjct 1551 SHSPAKPVLIFVSSRRQTRLTALELIAFLATEEDPKQWLNMDEREMENIIGTIRDSNLKL 1610 Query 403 LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-------- 454 + G + +RD++ V + F + + +L+ATS G++ P V++ Sbjct 1611 TLAFGIGMHHAGLHERDRKTVEELFVNCKIQVLIATSTLAWGVNFPAHLVIIKGTEYYDG 1670 Query 455 ---RY-GLLTNEISMVQARGRARA----DQSVYAFVATEGSRELKRELINE 497 RY ++Q GRA DQ + + ++ ++ + E Sbjct 1671 KTRRYVDFPIT--DVLQMMGRAGRPQFDDQGKAVILVHDIKKDFYKKFLYE 1719 >sp|F1NTD6|ASCC3_CHICK Activating signal cointegrator 1 complex subunit 3 OS=Gallus gallus OX=9031 GN=ascc3 PE=3 SV=2 Length=2211 Score = 82.5 bits (202), Expect = 8e-15, Method: Composition-based stats. Identities = 44/176 (25%), Positives = 74/176 (42%), Gaps = 19/176 (11%) Query 7 QWEVIMPALE-GKNIIIWLPTGAGKTRAAAYVAKRHLET--------VDGAKVVVLVNRV 57 Q V A +N++I PTGAGKT A + D K+V + Sbjct 490 QSIVFETAYNTNENMLICAPTGAGKTNIAMLTVLHEIRQHVQHGVIKKDEFKIVYVAPMK 549 Query 58 HLVTQHGEEFRRMLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE 116 L + F + L+ TV L+GDM G +L+ T E + + + Sbjct 550 ALAAEMTNYFSKRLEPLGITVKELTGDMQLSKGE---ILRTQMLVTTPEKW--DVVTRKS 604 Query 117 EEHVELTVFS-LIVVDECH--HTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS 169 V L+ L+++DE H H + V I+++ L ++ Q + ++LGL+A+ Sbjct 605 VGDVALSQLVKLLILDEVHLLHEDRGPVLESIVARTLRQ-VESTQSMIRILGLSAT 659 Score = 72.1 bits (175), Expect = 1e-11, Method: Composition-based stats. Identities = 57/303 (19%), Positives = 101/303 (33%), Gaps = 15/303 (5%) Query 19 NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEE--FRRMLDGRWT 76 N+++ PTG+GKT AA R +K V + LV + E+ R Sbjct 1353 NVLLGAPTGSGKTVAAELAIFRVFNKYPTSKAVYIAPLKALVRERIEDWKVRIEEKLGKK 1412 Query 77 VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHT 136 V L+GD+ P DL++ T E S + +V+ S++++DE H Sbjct 1413 VVELTGDVTPDM---RAIAQADLIVTTPEKWDGVSRSWQNRSYVQ--KVSILIIDEIHLL 1467 Query 137 H-KDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTW 195 + ++ + +V+GL S A L +N N Sbjct 1468 GDERGPVLEVIVSRTNFISSHTEKPVRVVGL--STALANARDLADWLNINQMGLFNFRPS 1525 Query 196 CIMSPQNCCPQLQE---HSQQPCKQYNLCHR--RSQDPFGDLLKKLMDQIHDHLEMPELS 250 P Q + + + + RS P +L + + L +L Sbjct 1526 VRPVPLEVHIQGFPGQHYCPRMARMNKPAFQAIRSHSPAKPVLIFVSSRRQTRLTSLDLI 1585 Query 251 RKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFY 310 T+ +Q +K+ E + R L L + H + D + F Sbjct 1586 AFLATEDDPKQWLKMDEREMNDIIGTVRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFV 1645 Query 311 HRE 313 + + Sbjct 1646 NCK 1648 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 42/265 (16%), Positives = 85/265 (32%), Gaps = 50/265 (19%) Query 363 SSSNSPRGIIFT----RTRQSAHSLLLWLQQQQGL----------------QTVDIRAQL 402 S S + +IF +TR ++ L+ +L + D +L Sbjct 1560 SHSPAKPVLIFVSSRRQTRLTSLDLIAFLATEDDPKQWLKMDEREMNDIIGTVRDSNLKL 1619 Query 403 LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVR----YG- 457 + G + +RD++ V + F + + +L+ATS G++ P V+V+ Y Sbjct 1620 TLAFGIGMHHAGLHERDRKTVEELFVNCKIQVLIATSTLAWGVNFPAHLVIVKGTEYYDG 1679 Query 458 LLTNEISM-----VQARGRARA----DQSVYAFVATEGSRELKRELINEALE-------- 500 + +Q GRA DQ + + ++ ++ + E Sbjct 1680 KTRRYVDYPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFYKKFLYEPFPVESSLLDV 1739 Query 501 -------TLMEQAVAAVQK-MDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHV 552 + + + Q MD + R L + + + Sbjct 1740 LADHLNAEIAAGTITSKQDAMDYITWTYFFRRLIMNPTYYNLDNVSHDTMNKYLSSLVEK 1799 Query 553 QLLCINCMVAVGHGSDLRKVEGTHH 577 L + C + G D R +E + Sbjct 1800 SLFDLECSYCIEIGEDNRTIEPLTY 1824 Score = 39.0 bits (89), Expect = 0.21, Method: Composition-based stats. Identities = 41/247 (17%), Positives = 84/247 (34%), Gaps = 51/247 (21%) Query 249 LSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALA---- 304 ++RK + Q+VKL + L E R L + T + L Sbjct 600 VTRKSVGDVALSQLVKLLILDEVHLLHEDRGPVLESIVARTLRQVESTQSMIRILGLSAT 659 Query 305 -----ALQDFYHREHVTKTQILCAERRLLALFD--------DRKNELAHLATHGPENPKL 351 + F H + R + L ++ +L H+ EN Sbjct 660 LPNYLDVATFLHVNPYIGLFYFDSRFRPVPLGQTFIGIKTTNKVQQLNHMDEVCYEN--- 716 Query 352 EMLEKILQRQFSSSNSPRGIIFTR----TRQSAHSLLLWLQQQQGL-------------- 393 +L++I+ + ++F T ++A +L + + Sbjct 717 -VLKQIMAGH-------QVMVFVHARNATVRTAMALREKAKNNGHICHFLSPQGSDYGQA 768 Query 394 -----QTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIP 448 ++ + + + L G S M ++D+ V F +G + +LV T+ G+++P Sbjct 769 EKQVQRSRNKQLRELFPDGFSIHHAGMLRQDRSLVENLFSNGHIKVLVCTATLAWGVNLP 828 Query 449 HCNVVVR 455 VV++ Sbjct 829 AHAVVIK 835 >sp|P37954|UVRB_BACSU UvrABC system protein B OS=Bacillus subtilis (strain 168) OX=224308 GN=uvrB PE=1 SV=2 Length=661 Score = 81.8 bits (200), Expect = 8e-15, Method: Composition-based stats. Identities = 33/175 (19%), Positives = 70/175 (40%), Gaps = 20/175 (11%) Query 365 SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI 424 + R ++ T T++ + L +L++ IG + + + ++ E+I Sbjct 443 ERNERVLVTTLTKKMSEDLTDYLKE--------------IGIKVNYLHSEIKTLERIEII 488 Query 425 QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVY 479 + + G ++LV ++ EGLDIP ++V L +E S++Q GRA + Sbjct 489 RDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAEGR 548 Query 480 AFVATEGSRELKRELINE-ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKR 533 + + + INE ++ + +IRD+ +A + Sbjct 549 VIMYADKITKSMEIAINETKRRREQQERFNEEHGITPKTINKEIRDVIRATVAAE 603 >sp|A3GGE9|DBP4_PICST ATP-dependent RNA helicase DBP4 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) OX=322104 GN=DBP4 PE=3 SV=2 Length=765 Score = 82.2 bits (201), Expect = 8e-15, Method: Composition-based stats. Identities = 33/178 (19%), Positives = 56/178 (31%), Gaps = 20/178 (11%) Query 331 FDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQ 390 L P + KL++L ++ + ++F + + + Sbjct 260 VSATPESLDQYYIRIPLDEKLDVLWSFIKSHLK----SKILVFFSSSKQVQYAYETFRTL 315 Query 391 QGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHC 450 Q G Q + E KF L AT + GLD P Sbjct 316 QP------------GISLLKLYGRHKQTSRLETTVKFTQAQYACLFATDIVARGLDFPAI 363 Query 451 NVVVRYGLLTNEISMVQARGRA----RADQSVYAFVATEGSRELKRELINEALETLME 504 + VV+ + ++ V GRA R +S+ + +E LKR N+ M Sbjct 364 DWVVQVDCPEDAVTYVHRVGRAARFGRQGKSLLMLLPSEEEGMLKRLENNKIEPKFMN 421 Score = 63.7 bits (153), Expect = 4e-09, Method: Composition-based stats. Identities = 56/369 (15%), Positives = 108/369 (29%), Gaps = 35/369 (9%) Query 1 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAY------VAKRHLETVDGAKVVVLV 54 M L Q + I AL+G++++ TG+GKT A + + + DG +++ Sbjct 68 MSLTDIQKKTIPIALKGEDLMGTARTGSGKTL-AFLIPVVESLIRNKITEHDGLAALIVS 126 Query 55 NRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP 114 L Q E ++ L ++L+ T + L Sbjct 127 PTRELAVQTFEVLTKIGKYNTFSAGLVTGGKDVQYEKERVSRMNILVGTPGRISQHLNEA 186 Query 115 EEEEHVELTVFSLIVVDECHHT------------HKDTVYNVIMSQYLELKLQRAQPLPQ 162 +E + ++V+DE + + L + Sbjct 187 VG---METSNLQVLVLDEADRCLDMGFKKQIDNIVGHLPPTRQTLLFSATVSDSVKDLAR 243 Query 163 VLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCH 222 L LT G +S D V +LD + I P + + + + + Sbjct 244 -LSLTNPKRIGVSSDQD-----VSATPESLDQYYIRIPLDEKLDVLWSFIKSHLKSKILV 297 Query 223 RRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYAL 282 S + + + + +L +G +Q +L Q ++A Sbjct 298 FFSSSKQVQYAYETFRTLQPGISLLKL---YGRH---KQTSRLETTVKFTQAQYACLFAT 351 Query 283 HLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLA 342 + D V VD + HR + + LL L + + Sbjct 352 DIVARGLDFPAIDWVVQVDCPEDAVTYVHRVG-RAARFGRQGKSLLMLLPSEEEGMLKRL 410 Query 343 THGPENPKL 351 + PK Sbjct 411 ENNKIEPKF 419 >sp|Q58969|Y1574_METJA Uncharacterized ATP-dependent helicase MJ1574 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ1574 PE=3 SV=1 Length=684 Score = 81.8 bits (200), Expect = 8e-15, Method: Composition-based stats. Identities = 32/161 (20%), Positives = 73/161 (45%), Gaps = 18/161 (11%) Query 352 EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ 411 ++L ++++ N+ + ++F TR+ L+ +L + + S+ Sbjct 263 QLLRRLIENL--VDNNIKTLVFFDTRKETEKLMRFLLNSKVFYKL------------STY 308 Query 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEI-SMVQARG 470 + + ++E+ +KF++G + L+ T+ E G+DI + V+ YG+ + I S++Q G Sbjct 309 KGTLPKYVREEIEEKFKNGEILALLTTNALELGIDIGDLDAVINYGIPPDGIFSLIQRFG 368 Query 471 RARADQS---VYAFVATEGSRELKRELINEALETLMEQAVA 508 RA + +G +E +NE E + + + Sbjct 369 RAGRRDKEALNIIVLRKDGLDYYYKEHLNELYERIRKGIIE 409 Score = 56.7 bits (135), Expect = 5e-07, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 67/177 (38%), Gaps = 8/177 (5%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEE 66 Q + + K++++ T +GK+ + + + +++ L+ E+ Sbjct 50 QVKALKYLYNKKDVVVTTSTASGKSEIFRLAIFDNFLSNPDDRYLLIYPTRALINNQYEK 109 Query 67 FR-------RMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 F ++ + R L+GD+G L ++L T ++L + Sbjct 110 FSMENELFYKITNKRVKAEILTGDVGLEKRREILKDKPNVLFTTPDMLHYQILKNHNNYL 169 Query 120 VELTVFSLIVVDECHHTHKDTVYNVI-MSQYLELKLQRAQPLPQVLGLTASPGTGGA 175 L L+VVDE H N++ + + L L+R Q+L L+A+ Sbjct 170 WLLKNLKLLVVDELHVYRGVFGTNMVYVFKRLLKLLKRLNNNLQILCLSATLKNPKE 226 >sp|Q3B7N1|CHD1L_BOVIN Chromodomain-helicase-DNA-binding protein 1-like OS=Bos taurus OX=9913 GN=CHD1L PE=2 SV=1 Length=897 Score = 82.2 bits (201), Expect = 8e-15, Method: Composition-based stats. Identities = 85/498 (17%), Positives = 156/498 (31%), Gaps = 91/498 (18%) Query 1 MELRSYQWEVIM---PALEGKNIIIWLP-TGAGKT-RAAAYVAKRHLETVDGAKVVVLVN 55 + LR YQ + + +N I G GKT + A D ++L Sbjct 46 IHLRPYQLQGVNWLAQCFHCQNGCILGDEMGLGKTCQTIALFIYLAGRLNDEGPFLILCP 105 Query 56 RVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARC---HDLLICTAELLQMALT 112 L + EE R G VT +GD RA + +L+ T E+ Sbjct 106 LSVL-SNWKEEMERFAPGLSCVT-YAGDKDKRACLQQDLKQESRFHVLLTTYEICLKD-- 161 Query 113 SPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGT 172 ++ +S++VVDE H S L L + +L LT +P Sbjct 162 ----ASFLKSFPWSVLVVDEAHRLKNQ-------SSLLHKTLSEFSVVFSLL-LTGTPIQ 209 Query 173 GGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDL 232 +L ++ V +L + + Q + Sbjct 210 NSLQELYSLLSFV---EPDLFSKEQVEDFVQRYQ---------------DIEKESESASE 251 Query 233 LKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALL 292 L KL+ P L R+ ++ + K Q+ Y + + Sbjct 252 LYKLLQ--------PFLLRRVKAEVATELPRKTEVVIYHGMSALQKKYYKAILMKDLDAF 303 Query 293 IHDTVRAV---DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENP 349 ++T + V + L+ L+ ++ L + + Sbjct 304 ENETAKKVKLQNVLSQLRKCVDHPYLFDGVEPEPFEIGDHLIEA--------------SG 349 Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 KL +L+K+L F S R ++F++ Q L +L G Sbjct 350 KLHLLDKLLA--FLYSKGHRVLLFSQMTQMLDILQDYLD--------------YRGYSYE 393 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNL---LVATSVAEEGLDIPHCNVVVRYGLLTNEISMV 466 + ++ I+ F G + L++T G+++ + V+ + N + + Sbjct 394 RVDGSVRGEERHLAIKNF--GQQPIFTFLLSTRAGGVGMNLTAADTVIFFDSDFNPQNDL 451 Query 467 QARGRA---RADQSVYAF 481 QA RA ++SV Sbjct 452 QAAARAHRIGQNKSVKVI 469 >sp|Q5ZJF6|DDX10_CHICK Probable ATP-dependent RNA helicase DDX10 OS=Gallus gallus OX=9031 GN=DDX10 PE=2 SV=1 Length=875 Score = 82.2 bits (201), Expect = 8e-15, Method: Composition-based stats. Identities = 51/273 (19%), Positives = 87/273 (32%), Gaps = 47/273 (17%) Query 301 DALAALQDFYHREHVTKTQILCAERRLLALFD----DRKNELAHLATHGPE----NPK-- 350 D + D + + ++R LF +LA L+ PE + K Sbjct 226 DEADRILDMGFADTMNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPEYVWVHEKAK 285 Query 351 ---------------LEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQT 395 L+ +L S + I+F + + L + Q Sbjct 286 FSTPATLDQNYIVCELQHKINVLYSFLRSHLKKKSIVFFASCKEVQYLFRVFCKLQP--- 342 Query 396 VDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVR 455 G + Q + EV F +L AT +A GLD P N V++ Sbjct 343 ---------GLPVLALHGKQQQMKRMEVYTCFVRKKAAVLFATDIAARGLDFPAVNWVIQ 393 Query 456 YGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMD 514 + + + + GR AR + A + S E +E L ++ V + Sbjct 394 FDCPEDANTYIHRVGRTARYKEGGEALLVLLPSEE------KGMVEQLAQRKVPVNEIKI 447 Query 515 QAEYQAKIRDLQQAALTKRAAQAAQRENQRQQF 547 E KI D+Q+ A +E ++ F Sbjct 448 NPE---KITDIQKRMQAFLAQDQELKEKAQRCF 477 Score = 58.3 bits (139), Expect = 2e-07, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 48/127 (38%), Gaps = 8/127 (6%) Query 14 ALEGKNIIIWLPTGAGKTR---AAAYVAKRHLETV--DGAKVVVLVNRVHLVTQHGEEFR 68 AL+GK+++ TG+GKT A L+ DG V+++ L Q + R Sbjct 107 ALQGKDVLGAAKTGSGKTLAFIVPALELLYRLQWTSADGLGVLIISPTRELAFQTFKVLR 166 Query 69 RMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLI 128 ++ L ++LICT L + +E + + ++ Sbjct 167 KVGKNHDFSAGLIIGGKDLKEESERIHHINMLICTPGRLLQHM---DETSYFYASDLQML 223 Query 129 VVDECHH 135 ++DE Sbjct 224 ILDEADR 230 >sp|Q6AF52|UVRB_LEIXX UvrABC system protein B OS=Leifsonia xyli subsp. xyli (strain CTCB07) OX=281090 GN=uvrB PE=3 SV=1 Length=688 Score = 81.8 bits (200), Expect = 9e-15, Method: Composition-based stats. Identities = 34/204 (17%), Positives = 76/204 (37%), Gaps = 31/204 (15%) Query 363 SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE 422 + R ++ T T++ A L +L + G + + E Sbjct 445 RAERDERVLVTTLTKKMAEELTDFLAEA--------------GVKVRYLHADVDTLRRVE 490 Query 423 VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQS 477 ++ + + G ++LV ++ EGLD+P ++V L + S++Q GRA + S Sbjct 491 LLTELRSGVFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSTSLIQTIGRAARNVS 550 Query 478 VYAFVATEGSRELKRELINEALETLMEQAVAAVQ-----KMDQAEYQAKIRDLQQAALTK 532 + + + + + +A+E ++ V+ +D + +I D+ + Sbjct 551 GEVHMYAD----VLTDSMKKAIEETSRRSELQVEYNRANGIDPQPLRKRIADITDILARE 606 Query 533 RAAQAAQ---RENQRQQFPVEHVQ 553 A A R+ +R+ Sbjct 607 EADTAKILAGRDQKRKSPTPSLRS 630 >sp|Q6CN92|SPB4_KLULA ATP-dependent rRNA helicase SPB4 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=SPB4 PE=3 SV=1 Length=596 Score = 81.4 bits (199), Expect = 9e-15, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 49/123 (40%), Gaps = 8/123 (7%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 + I++ T S ++ + L + +L S + + + + + F Sbjct 263 KCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLF------SLHGKLQTQSRMKTLDSFT 316 Query 429 DGTLN-LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEG 486 + +L T VA G+DIP ++V++ T+ + GR RA++ A V Sbjct 317 SNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVFLNE 376 Query 487 SRE 489 RE Sbjct 377 GRE 379 Score = 38.2 bits (87), Expect = 0.28, Method: Composition-based stats. Identities = 20/127 (16%), Positives = 37/127 (29%), Gaps = 24/127 (19%) Query 26 TGAGKTRAAAY------VAKRHLETVDGAKVVV----LVNRVHLVTQHGEEFRRML---- 71 TG+GKT A + K + K + L +Q + L Sbjct 53 TGSGKT-IAFVIPILERLIKEEANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYP 111 Query 72 ----DGRWTVTTLSGDMGPRAGFGHLARCH-DLLICTAELLQMALTSPEEEEHVELTVFS 126 R + + R +L+ T + L ++ +V+ Sbjct 112 DNLYPIRSQLLVGTSSASVRDDINSFTDNRPQILVGTPGRVLDFL----QKTNVKTASCG 167 Query 127 LIVVDEC 133 +V+DE Sbjct 168 TVVLDEA 174 >sp|B4F2H6|RAPA_PROMH RNA polymerase-associated protein RapA OS=Proteus mirabilis (strain HI4320) OX=529507 GN=rapA PE=3 SV=1 Length=967 Score = 82.2 bits (201), Expect = 9e-15, Method: Composition-based stats. Identities = 84/542 (15%), Positives = 177/542 (33%), Gaps = 58/542 (11%) Query 5 SYQWEVIMPALEGKN--IIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ 62 +Q + + N +++ G GKT A + + + +V+++V L Q Sbjct 155 PHQLYIANEVGKRHNPRVLLADEVGLGKTIEAGMIIHQQIMDGRAERVLIIVP-ESLQHQ 213 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 E R + R+++ S + ++IC+ + ++ + + EH+ Sbjct 214 WLVEMLRRFNLRFSLFDDSRYSESLLDSDNPFETEQMIICSLDFVRK---NKQRFEHLVE 270 Query 123 TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG 180 + ++VVDE HH + ++ A+ +P VL LTA+P + G Sbjct 271 ATWDMLVVDEAHHLVWSEKAPSRE-----YQVIETLAEAIPSVLLLTATP------EQLG 319 Query 181 AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI 240 +H +L LD + + +P D + + + I Sbjct 320 QESHFARL-RLLDPNRFHDYNEFINE--QQKYRPVADAVTILLSEDDLNNEQQNSISEMI 376 Query 241 HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLR-RYNDALLIHDTVRA 299 + P L Q + AL + R L R + + R Sbjct 377 SEQDIEPLLKA-----SNTQGEERTKSRQALIHMLMDRHGTGRLLFRNTRSGVKGFPNRL 431 Query 300 VDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPEN-------PKLE 352 + A+ ++ + +I+ A++ L + EN P++E Sbjct 432 LHAIKMPLPTQYQTAIKVAEIMAAKKSLEVRAKEMLYPERIYQEFEGENATWWNFDPRVE 491 Query 353 MLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQS 412 L L +++ + ++ +A L L++++G++ Sbjct 492 WLLGFL----TANRHEKVLVICAQAATALQLEQVLREREGIRAAVFH------------- 534 Query 413 THMTQRDQQEVIQKFQDGT--LNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARG 470 M+ ++ F +L+ + + EG + N +V + L N + Q G Sbjct 535 EGMSLLERDRAAAYFASEEEGAQVLLCSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIG 594 Query 471 R----ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQ 526 R + + EG+ + E + + EY A + L Sbjct 595 RLDRIGQNRDIDISVPYLEGTAQSVLLRWYHEGLDAFEHTCPTGRTIYDNEYDALVNYLA 654 Query 527 QA 528 Q Sbjct 655 QP 656 >sp|Q12RU8|RAPA_SHEDO RNA polymerase-associated protein RapA OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) OX=318161 GN=rapA PE=3 SV=1 Length=968 Score = 81.8 bits (200), Expect = 9e-15, Method: Composition-based stats. Identities = 74/452 (16%), Positives = 151/452 (33%), Gaps = 40/452 (9%) Query 27 GAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGP 86 G GKT A + + L T +++V+V L Q E R + R++V + Sbjct 179 GLGKTIEAGLIMHQQLLTGRAERILVIVPD-TLRHQWLVEMLRRFNLRFSVFDEDRCVEA 237 Query 87 RAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHT--HKDTVYNV 144 A + L+IC+ L + + + L+VVDE HH +D Sbjct 238 YADNDNPFYTEQLVICS----LELLRKKKRLDQALDADWDLLVVDEAHHLEWSEDAPSRA 293 Query 145 IMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCC 204 ++ ++ +P VL LTA+P G + + + D + Sbjct 294 -----YQVVEALSEVVPGVLLLTATPDQLGHQSHFARLRLL-----DPDRFYDYDAFLTE 343 Query 205 PQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVK 264 Q + + + + ++ D + L +L+ + D L + +QQ + Sbjct 344 EQGYQAVAEAAEALSGE-KKLNDSAINSLTELLSE-KDIAPSIRLIQANEVDPEQQQAAR 401 Query 265 LSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAE 324 L L ++ L R + A + R + + ++ + Sbjct 402 D---GLLQELLDRHGTGRVLYRNSRASVKGFPKRIFNPHPQAMPEQYVTAERVNAMMSGK 458 Query 325 RRLLALFDDRKNELAHLATHGPENP---KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAH 381 + A + + ++ K + L S S + +I ++A Sbjct 459 KTPQAKALEALSPEKLYQAFESDSASWWKFDTRVDWLIAFLKSHRSKKVLIIASQAETAL 518 Query 382 SLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF--QDGTLNLLVATS 439 SL L+ ++G+ M+ ++ + F +D L+ + Sbjct 519 SLEEALRTREGILATVFH-------------EGMSIIERDKAGAYFAQEDAGAQALICSE 565 Query 440 VAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 + EG + + +V + L N + Q GR Sbjct 566 IGSEGRNFQFASHLVLFDLPLNPDLLEQRIGR 597 >sp|Q54G57|ASCC3_DICDI Activating signal cointegrator 1 complex subunit 3 OS=Dictyostelium discoideum OX=44689 GN=ascc3 PE=3 SV=1 Length=2195 Score = 82.2 bits (201), Expect = 1e-14, Method: Composition-based stats. Identities = 44/177 (25%), Positives = 76/177 (43%), Gaps = 21/177 (12%) Query 7 QWEVIMPALEG-KNIIIWLPTGAGKTRAAAYVAKRHLET---------VDGAKVVVLVNR 56 Q V A + +NI+I PTGAGKT A +E+ D K++ + Sbjct 487 QSRVFESAYKSNENILISAPTGAGKTNIALLTILHEIESNINPYGYLDKDNFKIIYIAPL 546 Query 57 VHLVTQHGEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE 115 L ++ E+F L L+GDM + +++ T E +T Sbjct 547 KALASEMVEKFSNSLKYLGIVSKELTGDMQLTQKE---LKETQIIVTTPEK-WDVITRKS 602 Query 116 EEEHVELTVFS-LIVVDECH--HTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS 169 + V LT LI++DE H H + V I+++ L ++ Q + +++GL+A+ Sbjct 603 SD--VALTKLVRLIIIDEIHLLHEERGPVLECIVARTLRQ-VETTQEMIRIVGLSAT 656 Score = 68.3 bits (165), Expect = 2e-10, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 61/153 (40%), Gaps = 8/153 (5%) Query 18 KNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEE--FRRMLDGRW 75 N+++ PTG+GKT A + KVV + LV + + + Sbjct 1343 NNVLLGSPTGSGKTICAELAMFKVFRDEPHMKVVYIAPLKALVRERMNDWKVKFQEKLGK 1402 Query 76 TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH 135 + L+GD P + D++ T E + + +V T SL+++DE H Sbjct 1403 KLVELTGDYTPNMI---ALQNADIVTTTPEKWDGISRNWKNRSYV--TSVSLLIIDEIHL 1457 Query 136 THK-DTVYNVIMSQYLELKLQRAQPLPQVLGLT 167 + ++ ++L ++ +V+GL+ Sbjct 1458 IGELRGPILEVIVSRMKLISKQTGVNIRVVGLS 1490 >sp|A1R6F3|UVRB_PAEAT UvrABC system protein B OS=Paenarthrobacter aurescens (strain TC1) OX=290340 GN=uvrB PE=3 SV=1 Length=699 Score = 81.8 bits (200), Expect = 1e-14, Method: Composition-based stats. Identities = 42/267 (16%), Positives = 89/267 (33%), Gaps = 39/267 (15%) Query 363 SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE 422 + + R ++ T T++ A L +L + G + + + E Sbjct 449 RTEKNERVLVTTLTKRMAEDLTDYL--------------VGHGVKVEYLHSDVDTLRRVE 494 Query 423 VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQS 477 ++++ + G ++LV ++ EGLD+P ++V L + S++Q GRA + S Sbjct 495 LLRELRMGVFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSSTSLIQTIGRAARNVS 554 Query 478 VYAFVATEGSRELKRELINEALETLMEQAVAAVQ-----KMDQAEYQAKIRDLQQAALTK 532 + + + + A+E + VQ +D + KI D+ + Sbjct 555 GQVHMYADR----ITDSMAHAIEETNRRRAIQVQYNTDHGIDPQPLRKKIADITDQLAKE 610 Query 533 RAAQAAQRENQRQQFPVEHVQLLCINCM------VAVGHGSDL-----RKVEGTHHVNVN 581 A N R + + +A DL + E H Sbjct 611 DADTQELLNNNRLAKGGKRGKSAAKGAATVRQDGLAAAPAEDLVGLIEQLTEQMHGAAAE 670 Query 582 PNFSNYYNVSRDPVVINKVFKDWKPGG 608 F + + + + + + G Sbjct 671 LQFEVAARIRDEVKELKRELRQMQSAG 697 >sp|A5DTK7|MS116_LODEL ATP-dependent RNA helicase MSS116, mitochondrial OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) OX=379508 GN=MSS116 PE=3 SV=1 Length=692 Score = 81.8 bits (200), Expect = 1e-14, Method: Composition-based stats. Identities = 31/175 (18%), Positives = 61/175 (35%), Gaps = 9/175 (5%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K + + S + ++F T+ + L ++ + VDI L G ++ Sbjct 377 KFGSFFNYVNQLVKDSPDMKMMVFLPTQTAVEFLYSYMSEACHKHDVDIDIFHLHGKRSA 436 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 S +Q + F+ +L+ T VA G+D+ VV+ + V Sbjct 437 S--------QRQRALSNFKRDDSGILITTDVAARGIDVKGVTHVVQLFPSSEIADYVHKV 488 Query 470 GR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIR 523 GR RA + A + +N EQ + + + ++ +R Sbjct 489 GRTGRAGKEGKAVLFITQPEMAYVRRLNSERGVTFEQVHESSEIDNSIDFFEGMR 543 Score = 40.6 bits (93), Expect = 0.047, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 50/140 (36%), Gaps = 13/140 (9%) Query 7 QWEVIMPALEGKNIIIW-LPTGAGKTRA--------AAYVAKRHLETVDGAKVVVLVNRV 57 Q + I+P LE + ++ TG GKT A G V++V Sbjct 157 QQKSIVPLLETERGMVCRAKTGTGKTLTFLIPTLQSAVSRKIASGGRSSGVDTVIIVPTR 216 Query 58 HLVTQHGEEFRRMLDG--RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE 115 L Q +E++++L G +S +G + +++I T L+ L SP Sbjct 217 DLALQIYDEYQKVLRGISGSRKPHISYVIGGMKNSFNPRNPSEIVIATPGRLEADLRSPL 276 Query 116 EEEHVELTVFSLIVVDECHH 135 T V DE Sbjct 277 FAS--AFTDIKYRVYDEADR 294 >sp|A7ESL8|DBP4_SCLS1 ATP-dependent RNA helicase dbp4 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 GN=dbp4 PE=3 SV=1 Length=808 Score = 81.8 bits (200), Expect = 1e-14, Method: Composition-based stats. Identities = 68/471 (14%), Positives = 136/471 (29%), Gaps = 77/471 (16%) Query 165 GLTASPGTGGASKLDGAINHVLQLCANLDTWCI---MSPQNCCPQLQEHSQQPCKQYNLC 221 GL AS A+ L+ L + P L+ +Q + + Sbjct 63 GLEASHFKTLTDVQSKAVPLALKGKDILGAAKTGSGKTLAFLVPVLENLYRQKWTELDGL 122 Query 222 HRRSQDPFGDLLKKLMDQIH--DHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRV 279 P +L ++ + + G + +++ +L L + Sbjct 123 GALIISPTRELAIQIFEVLRKIGRYHTFSAGLIIGGRSLQEERERLGRMNIL--VCTPGR 180 Query 280 YALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFD----DRK 335 H+ + + + + +D + D + V ++R LF + Sbjct 181 MLQHMDQTAAFDVDNLQMLVLDEADRIMDMGFQTSVDAILEHLPKQRQTMLFSATQTKKV 240 Query 336 NELAHLATHGPEN-------------------------PKLEMLEKILQRQFSSSNSPRG 370 ++LA L+ PE KL L ++ + Sbjct 241 SDLARLSLKEPEYVAVHEAASSATPTTLQQHYCVVPLPEKLNTLFGFIRANLK----AKI 296 Query 371 IIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDG 430 I+F + + + L+ Q G Q + ++ KF Sbjct 297 IVFMSSGKQVRFVYESLRHLQP------------GIPLLHLHGRQKQTARLDITSKFSSS 344 Query 431 TLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRE 489 + + AT V GLD P + V++ + + + GR AR + A + + S E Sbjct 345 KNSCIFATDVVARGLDFPAVDWVIQLDCPEDADTYIHRVGRTARYGKVGRAVLFLDPSEE 404 Query 490 LKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPV 549 E + +E +QK + R + +NQ Q Sbjct 405 -------EGMLKRLEHKKVPIQK-----------------INIRPNKTQDIKNQLQNMCF 440 Query 550 EHVQLLCINCMVAVGHGSDLRKVEGTHHVNVNPNFSNYYNVSRDPVVINKV 600 + +L + V + + + N+N Y S K+ Sbjct 441 QDPELKYLGQKAFVSYAKSVFLQKDKEIFNINDIDLEGYASSIGLPGAPKI 491 Score = 55.6 bits (132), Expect = 1e-06, Method: Composition-based stats. Identities = 28/136 (21%), Positives = 56/136 (41%), Gaps = 12/136 (9%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAY--VAKRHLETV----DGAKVVVLVNRVHLV 60 Q + + AL+GK+I+ TG+GKT A V + DG +++ L Sbjct 76 QSKAVPLALKGKDILGAAKTGSGKTL-AFLVPVLENLYRQKWTELDGLGALIISPTRELA 134 Query 61 TQHGEEFRRMLDGR-WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 Q E R++ ++ + G + L R + +L+CT + + ++ Sbjct 135 IQIFEVLRKIGRYHTFSAGLIIGGRSLQEERERLGRMN-ILVCTPGRMLQHM---DQTAA 190 Query 120 VELTVFSLIVVDECHH 135 ++ ++V+DE Sbjct 191 FDVDNLQMLVLDEADR 206 >sp|Q80Y44|DDX10_MOUSE Probable ATP-dependent RNA helicase DDX10 OS=Mus musculus OX=10090 GN=Ddx10 PE=1 SV=2 Length=875 Score = 81.8 bits (200), Expect = 1e-14, Method: Composition-based stats. Identities = 32/197 (16%), Positives = 72/197 (37%), Gaps = 24/197 (12%) Query 338 LAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD 397 L + K+ +L L+ + I+F + + L + + Sbjct 288 LEQNYIICELHQKISVLFSFLRSHLKK----KSIVFFSSCKEVQYLYRVFCRLRP----- 338 Query 398 IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG 457 G + Q + EV +F +L AT +A GLD P N V+++ Sbjct 339 -------GISILALHGRQQQMRRMEVYNEFVRKRAAVLFATDIAARGLDFPAVNWVLQFD 391 Query 458 LLTNEISMVQARGRA---RADQSVYAFVATEGSRELKRELINEALE----TLMEQAVAAV 510 + + + GR + D + + + ++L+ + + + + + V Sbjct 392 CPEDANTYIHRAGRTARYKEDGEALLILLPSEEQGMVQQLLQKKVPVKEIKINPEKLIDV 451 Query 511 QKMDQAEYQAKIRDLQQ 527 QK ++ + A+ +DL++ Sbjct 452 QKKLES-FLAQDQDLKE 467 Score = 57.9 bits (138), Expect = 2e-07, Method: Composition-based stats. Identities = 60/394 (15%), Positives = 119/394 (30%), Gaps = 27/394 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTR---AAAYVAKRHLETV--DGAKVVVLVNRVHLVT 61 Q + I AL+GK+++ TG+GKT A L+ DG V+++ L Sbjct 96 QKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAY 155 Query 62 QHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVE 121 Q E R++ L ++L+CT L + Sbjct 156 QTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETIC---FH 212 Query 122 LTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGA 181 T ++V+DE D + M+ +E ++ Q L + T + ++L Sbjct 213 ATNLQMLVLDEADR-ILDMGFADTMNAIIENLPKKRQTL--LFSATQTKSVKDLARLSLK 269 Query 182 INHVLQLCANLDTWCIMSPQNCCP--QLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQ 239 + + + + +L + ++ F K++ Sbjct 270 DPEYVWVHEKAKYSTPATLEQNYIICELHQKISVLFSFLRSHLKKKSIVFFSSCKEVQYL 329 Query 240 IHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRA 299 + +QQ+ ++ + ++A + + V Sbjct 330 YRVFCRLRPGISILALHGRQQQMRRMEVYNEFVRKRAAVLFATDIAARGLDFPAVNWVLQ 389 Query 300 VDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHL------ATHGPENP-KLE 352 D + HR T E L+ L + + + L NP KL Sbjct 390 FDCPEDANTYIHRAGRTARYKEDGEALLILLPSEEQGMVQQLLQKKVPVKEIKINPEKLI 449 Query 353 MLEKILQRQFSSSNS-----PRGIIFTRTRQSAH 381 ++K L+ + R F +S + Sbjct 450 DVQKKLESFLAQDQDLKERAQRC--FVSYIRSVY 481 >sp|C0MBD7|UVRB_STRE4 UvrABC system protein B OS=Streptococcus equi subsp. equi (strain 4047) OX=553482 GN=uvrB PE=3 SV=1 Length=663 Score = 81.4 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 35/205 (17%), Positives = 76/205 (37%), Gaps = 21/205 (10%) Query 349 PKLEMLEKILQRQ-FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG 407 P + ++ +L R I T T++ A L +L++ +G Sbjct 431 PSMGQMDDLLGEINLRVERGERTFITTLTKKMAEDLTDYLKE--------------MGVK 476 Query 408 NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNE 462 + + ++ E+I+ + G ++L+ ++ EG+D+P ++V L NE Sbjct 477 VKYMHSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNE 536 Query 463 ISMVQARGRARADQSVYAFVATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAK 521 ++Q GRA + + + + + ++R + A ++ A + + Sbjct 537 RGLIQTIGRAARNADGHVIMYADRMTDSMQRAIDETARRRAIQMAYNEEHGIIPQTIKKD 596 Query 522 IRDLQQAALTKRAAQAAQRENQRQQ 546 IRDL + A N Sbjct 597 IRDLISISRAVEAKATEAETNYESM 621 >sp|Q6BH93|HAS1_DEBHA ATP-dependent RNA helicase HAS1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=HAS1 PE=3 SV=1 Length=568 Score = 81.4 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 46/287 (16%), Positives = 93/287 (32%), Gaps = 17/287 (6%) Query 253 FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHR 312 G Q+ KL + L R+ HL+ + + +D + + Sbjct 211 IGGANRRQEAEKLMKGVNLLIATPGRLLD-HLQNTQGFVFKNVKALVIDEADRILEIGFE 269 Query 313 EHVTKT-QILCAERRLLALFDD----RKNELAHLA-THGPEN------PKLEMLEKILQR 360 E + + +IL E R LF + +LA ++ GP + + + Q Sbjct 270 EEMKQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLYINVASESEASTVAGLEQG 329 Query 361 QFSSSNSPR-GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRD 419 + R ++F+ +++ ++ I Q+ Sbjct 330 YVVCESDKRFLLLFSFLKRNVKKKIIVFLSSCNCVKYFGELLNYIDLPVLDLHGKQKQQK 389 Query 420 QQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-AR--ADQ 476 + +F + T +L+ T VA GLDIP + ++++ + + GR AR A + Sbjct 390 RTNTFFEFCNATQGILICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTAGK 449 Query 477 SVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIR 523 T R L + + Q++ I+ Sbjct 450 GKSLMFLTPSELGFLRYLKAANVPLNEYEFPTNKIANVQSQLTKLIK 496 Score = 52.9 bits (125), Expect = 8e-06, Method: Composition-based stats. Identities = 32/135 (24%), Positives = 48/135 (36%), Gaps = 9/135 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT---RAAAYVAKRHLETVD--GAKVVVLVNRVHLVT 61 Q + I P L G++++ TG+GKT A L G VVV+ L Sbjct 131 QAKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEMLYSLRFKPRNGTGVVVVSPTRELAL 190 Query 62 QHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 Q R ++ + G R L + +LLI T L L + + V Sbjct 191 QIFGVARELMAHHSQTFGIVIGGANRRQEAEKLMKGVNLLIATPGRLLDHLQNT--QGFV 248 Query 121 ELTVFSLIVVDECHH 135 +V+DE Sbjct 249 -FKNVKALVIDEADR 262 >sp|A8AJ07|UVRB_CITK8 UvrABC system protein B OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) OX=290338 GN=uvrB PE=3 SV=1 Length=673 Score = 81.4 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 26/125 (21%), Positives = 55/125 (44%), Gaps = 19/125 (15%) Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 + R ++ T T++ A L +L++ G + + ++ E+I+ Sbjct 446 NERVLVTTLTKRMAEDLTEYLEE--------------HGERVRYLHSDIDTVERMEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + + A Sbjct 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI 551 Query 482 VATEG 486 + + Sbjct 552 LYGDK 556 >sp|Q6CKZ4|DBP6_KLULA ATP-dependent RNA helicase DBP6 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=DBP6 PE=3 SV=1 Length=630 Score = 81.4 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 56/361 (16%), Positives = 131/361 (36%), Gaps = 32/361 (9%) Query 181 AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI 240 +N V + I +C +L + + N+ + ++ + K + Sbjct 257 TVNKVRAIILVPTKILIHQVYDCLSKLSQGTS-----LNVSMSKLENSLKEEHNKFLYNS 311 Query 241 HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV 300 D L + + + L L + R+ + +N L H T Sbjct 312 PDILIITPGRLV---DHLQMESFDLKTLKFLVLDEADRLLNQSFQNWNQVLFHHLTNDKQ 368 Query 301 DA-------------LAALQDFYHREHVTKTQILCAERRLLALFDDRKNELA-HLATHGP 346 D L + + ++ +I + L + EL ++ T Sbjct 369 DKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTDSVKLYSIPKKLQELNVNIPTAKS 428 Query 347 ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA 406 L +L I + S+S + + ++F ++ +++ L L G ++ + + Sbjct 429 LFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRLESLLHAMLGSGIIEDEYNMFL-- 486 Query 407 GNSSQSTHMTQRDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 SS +++++ +++IQ+F + ++L++T + G+DI V+ Y L + Sbjct 487 --SSIHSNISKGSSRKLIQEFASSEQKKSVLISTDIMARGIDINEITHVINYDLPISSQQ 544 Query 465 MVQARGR-ARADQSVYAF--VATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK 521 V GR ARA+ A + +G ++ + I+ L ++ + +D+ + Sbjct 545 YVHRCGRTARANTEGIAINLLVGKGEQKFWSQHIDTDLSRDIDGYQPSAY-LDEEKLSEL 603 Query 522 I 522 Sbjct 604 F 604 Score = 53.6 bits (127), Expect = 5e-06, Method: Composition-based stats. Identities = 30/146 (21%), Positives = 53/146 (36%), Gaps = 8/146 (5%) Query 20 IIIWLPTGAGKTRAAAYVAKRHLE--TVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV 77 I++ TG+GKT A + + L TV+ + ++LV L+ Q + ++ G Sbjct 231 ILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSLN 290 Query 78 TTLS--GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHH 135 ++S + L D+LI T L L +L +V+DE Sbjct 291 VSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMES----FDLKTLKFLVLDEADR 346 Query 136 THKDTVYNVIMSQYLELKLQRAQPLP 161 + N + L + P Sbjct 347 LLNQSFQNWNQVLFHHLTNDKQDKRP 372 >sp|P57991|UVRB_MYCLE UvrABC system protein B OS=Mycobacterium leprae (strain TN) OX=272631 GN=uvrB PE=3 SV=1 Length=698 Score = 81.4 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 33/176 (19%), Positives = 70/176 (40%), Gaps = 20/176 (11%) Query 363 SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE 422 ++ R ++ T T++ A L +L + +G + + + E Sbjct 443 RANADQRVLVTTLTKKMAEDLTDYLLE--------------MGIRVRYLHSEVDTLRRVE 488 Query 423 VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQS 477 ++++ + G ++LV ++ EGLD+P ++V L + S++Q GRA + S Sbjct 489 LLRQLRLGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSARSLIQTIGRAARNVS 548 Query 478 VYAFVATEGSRELKRELINEALETLMEQ-AVAAVQKMDQAEYQAKIRDLQQAALTK 532 + + + E I+E +Q A +D + KI D+ + Sbjct 549 GEVHMYADTITDSMTEAIDETERRRAKQIAYNNANGIDPQPLRKKIADILDQVYRE 604 Score = 34.4 bits (77), Expect = 4.5, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 27/65 (42%), Gaps = 6/65 (9%) Query 9 EVIMPALEGKNIIIWLP-TGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEF 67 E+ L G+ ++ L TG GK+ A++ +R +V+ L Q E Sbjct 25 ELQRRILAGERDVVLLGATGTGKSATTAWLIERLQRPT-----LVMAPNKTLAAQLANEL 79 Query 68 RRMLD 72 R ML Sbjct 80 RGMLP 84 >sp|A4XKY5|UVRB_CALS8 UvrABC system protein B OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903 / Tp8T 6331) OX=351627 GN=uvrB PE=3 SV=1 Length=661 Score = 81.4 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 44/294 (15%), Positives = 98/294 (33%), Gaps = 59/294 (20%) Query 305 ALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSS 364 L L R++ + P +++ L +++ Sbjct 384 KLNQVIFVSATPGPYELKKSSRVVEQIIRPTGLVDPEIEVHPVKGQIDHLIGEIRK--RV 441 Query 365 SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI 424 + R +I T T++ A SL +L+ +G + + ++ ++I Sbjct 442 EKNQRVLITTLTKKMAESLTEYLKD--------------VGIRVRYMHSDIDTIERMQII 487 Query 425 QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVY 479 + + G ++LV ++ EGLD+P ++V L +E S++Q GRA + Sbjct 488 RDLRLGKFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRAARNVDGK 547 Query 480 AFVATEGSRELKRELINEA-------LETLMEQAVAA----------------------- 509 + + + ++ I+E +E + + Sbjct 548 VIMYADRITKAMQKAIDETNRRRKIQIEYNQKHGIVPQTVRKGIRQIIEATISVAEEEEK 607 Query 510 --------VQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQLL 555 VQ M + E + I++L+Q ++ + + E +LL Sbjct 608 YESIEKDIVQNMSKQEIEEYIKELEQQMKRFAIELEFEKAAKIRDKIFELKKLL 661 Score = 35.9 bits (81), Expect = 1.4, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 7/64 (11%) Query 9 EVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFR 68 E I+ + + ++ TG+GKT A V + +VL + L Q EFR Sbjct 25 EGILKGEKFQTLLGV--TGSGKTFTMAKVIENVQRPT-----LVLAHNKTLAAQLCSEFR 77 Query 69 RMLD 72 Sbjct 78 EFFP 81 >sp|Q0DBS1|RH51_ORYSJ Putative DEAD-box ATP-dependent RNA helicase 51 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0535100 PE=3 SV=2 Length=590 Score = 81.0 bits (198), Expect = 1e-14, Method: Composition-based stats. Identities = 25/126 (20%), Positives = 42/126 (33%), Gaps = 18/126 (14%) Query 365 SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI 424 S + ++F + S Q L + I + G + Q + Sbjct 339 SEKTKVMVFFSSCNSVK------FHAQLLNFIQIECYDIHGQ--------LKQHQRTSTF 384 Query 425 QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARAD----QSVYA 480 KF +L+ T+VA GLDIP + +V+Y + GR S Sbjct 385 FKFHKAEHGILLCTNVAARGLDIPDVDYIVQYDPPDETKDYIHRVGRTARGDNGKGSAIL 444 Query 481 FVATEG 486 F+ + Sbjct 445 FLLPKE 450 Score = 59.8 bits (143), Expect = 5e-08, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 60/162 (37%), Gaps = 17/162 (10%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA----AA-YVAKRHLETVDGAKVVVLVNRVHLVT 61 Q I P + G +++ TG+GKT A A + + +G V+VL L Sbjct 113 QARSIPPLMLGSDVMASAKTGSGKTLAFLIPAIELLCRLRFSPRNGTGVIVLCPTRELAI 172 Query 62 QHGEEFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 Q + ++ G + R LA+ ++L+ T L + + ++ Sbjct 173 QTHNVAKELMRYHSQTLGYVIGGIDLRGEAEQLAKGINVLVATPGRLLDHMQKTKSFKYE 232 Query 121 ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQ 162 L +++DE ++ + E Q + LP+ Sbjct 233 CLK---CLIIDEADR--------ILEQNFEEQMKQIFKLLPR 263 >sp|P10125|UVRB_MICLC UvrABC system protein B OS=Micrococcus luteus (strain ATCC 4698 / DSM 20030 / JCM 1464 / CCM 169 / CCUG 5858 / IAM 1056 / NBRC 3333 / NCIMB 9278 / NCTC 2665 / VKM Ac-2230) OX=465515 GN=uvrB PE=3 SV=3 Length=709 Score = 81.4 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 32/178 (18%), Positives = 71/178 (40%), Gaps = 20/178 (11%) Query 363 SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE 422 ++ R ++ T T++ A L +L + G + + + E Sbjct 449 RTAKDERVLVTTLTKRMAEDLTDYLLEA--------------GVKVEYLHSDVDTLRRVE 494 Query 423 VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQS 477 ++++ + GT ++LV ++ EGLD+P ++V L + S++Q GRA + S Sbjct 495 LLRELRKGTFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAARNVS 554 Query 478 VYAFV-ATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRA 534 + A + ++R + ++ A +D + +I D+ + A Sbjct 555 GEVHMYAGNVTDSMRRAIEETERRRAVQIAYNEEHGIDPQPLRKRIADITDQLAREDA 612 >sp|Q12TR7|UVRB_METBU UvrABC system protein B OS=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) OX=259564 GN=uvrB PE=3 SV=1 Length=660 Score = 81.4 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 64/183 (35%), Gaps = 22/183 (12%) Query 364 SSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEV 423 + R ++ T T++ A L +L + +G + + ++ E+ Sbjct 443 TEKGYRTLVTTLTKRMAEDLTEYLLE--------------MGIRVRYMHSDIDTLERAEI 488 Query 424 IQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSV 478 I+ + G ++LV ++ EGLDIP V L +E S++Q GRA + Sbjct 489 IRDLRKGVFDVLVGINLLREGLDIPEVAFVAILDADKEGFLRSERSLIQTMGRASRNADG 548 Query 479 YAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA 538 Y + + ++ + ET + + I Q L + Sbjct 549 YVIL---YAGKVTGSIEAALRETNRRRQIQLAYNEKHGIVPQTIHKALQRELVETEYGEV 605 Query 539 QRE 541 E Sbjct 606 VSE 608 Score = 34.4 bits (77), Expect = 4.1, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 7/64 (11%) Query 9 EVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFR 68 E + L+ + ++ TG+GKT A V + +V+ + L Q EFR Sbjct 25 EGLNKGLKHQVLLGV--TGSGKTFTVANVIQNV-----QKPTLVIAHNKTLAAQLFSEFR 77 Query 69 RMLD 72 Sbjct 78 EFFP 81 >sp|B4U3P4|UVRB_STREM UvrABC system protein B OS=Streptococcus equi subsp. zooepidemicus (strain MGCS10565) OX=552526 GN=uvrB PE=3 SV=1 Length=663 Score = 81.4 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 35/205 (17%), Positives = 76/205 (37%), Gaps = 21/205 (10%) Query 349 PKLEMLEKILQRQ-FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG 407 P + ++ +L R I T T++ A L +L++ +G Sbjct 431 PSMGQMDDLLGEINLRVERGERTFITTLTKKMAEDLTDYLKE--------------MGVK 476 Query 408 NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNE 462 + + ++ E+I+ + G ++L+ ++ EG+D+P ++V L NE Sbjct 477 VKYMHSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNE 536 Query 463 ISMVQARGRARADQSVYAFVATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAK 521 ++Q GRA + + + + + ++R + A ++ A + + Sbjct 537 RGLIQTIGRAARNADGHVIMYADRMTDSMQRAIDETARRRAIQMAYNEEHGIIPQTIKKD 596 Query 522 IRDLQQAALTKRAAQAAQRENQRQQ 546 IRDL + A N Sbjct 597 IRDLISISRAVEAKATEAETNYESM 621 >sp|Q480C7|UVRB_COLP3 UvrABC system protein B OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) OX=167879 GN=uvrB PE=3 SV=1 Length=673 Score = 81.4 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 36/204 (18%), Positives = 75/204 (37%), Gaps = 21/204 (10%) Query 307 QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSN 366 Q Y +K ++ + L P +++ L + ++ Sbjct 387 QTIYVSATPSKFELEKCGSDIAEQVVRPTGLLDPEIEVRPVETQVDDLLSEINKRLPLDE 446 Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 R + T T++ A L +L G + + ++ E+I+ Sbjct 447 --RVLATTLTKRMAEDLTDYLYD--------------HGIKARYLHSDVDTVERVEIIRD 490 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 F+ G ++LV ++ EGLD+P ++V L ++ S++Q GRA + + A Sbjct 491 FRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRAARNLNGRAI 550 Query 482 VATEGSRELKRELINEALETLMEQ 505 + + R I+E ++Q Sbjct 551 LYGDRITGSMRRAIDETERRRVKQ 574 >sp|A4W6G3|RAPA_ENT38 RNA polymerase-associated protein RapA OS=Enterobacter sp. (strain 638) OX=399742 GN=rapA PE=3 SV=1 Length=968 Score = 81.8 bits (200), Expect = 1e-14, Method: Composition-based stats. Identities = 77/476 (16%), Positives = 153/476 (32%), Gaps = 44/476 (9%) Query 5 SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ 62 +Q + +++ G GKT A + + L + +V+++V L Q Sbjct 156 PHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIVVP-ETLQHQ 214 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 E R + R+++ + + L+IC+ L S + EH+ Sbjct 215 WLVEMLRRFNLRFSLFDDERYAEAQHDADNPFETEQLVICS---LDFVRRSKQRLEHLCD 271 Query 123 TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG 180 + L+VVDE HH ++ Q A+ +P +L LTA+P + G Sbjct 272 AEWDLLVVDEAHHLVWSENAPSRE-----YMAIEQLAERVPGILLLTATP------EQLG 320 Query 181 AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI 240 +H +L L + + ++ + +P + D L L D I Sbjct 321 LESHFARL--RLLDPNRFHDFDVFVE-EQQNYRPVADAVAMLLAGKHLSNDELNTLSDLI 377 Query 241 HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV 300 + P L + + + + RV + R + Sbjct 378 GEQDIEPLLHTANSDRDGADAARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIK 437 Query 301 DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG---PENPKLEMLEKI 357 L + AE R + + G +P++E L Sbjct 438 LPLPTQYQTAIKVSGIMGARKSAEERARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGY 497 Query 358 LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ 417 L S + ++ +A L L++++G++ M+ Sbjct 498 LTAH----RSQKVLVICAKAATALQLEQVLREREGIRAAVFH-------------EGMSI 540 Query 418 RDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 ++ F +D +L+ + + EG + + +V + L N + Q GR Sbjct 541 IERDRAAAWFGEEDSGAQVLLCSEIGSEGRNFQFASKLVMFDLPFNPDLLEQRIGR 596 >sp|P0DMI1|HELS_ARCFU ATP-dependent DNA helicase Hel308 OS=Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16) OX=224325 GN=hel308 PE=1 SV=1 Length=691 Score = 81.4 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 69/165 (42%), Gaps = 15/165 (9%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEE 66 Q E + GKN+++ +PT AGKT A R E + G K + +V L + E Sbjct 30 QAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVR--EAIKGGKSLYVVPLRALAGEKYES 87 Query 67 FRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS 126 F++ + +GD R D+++ T+E + + + S Sbjct 88 FKKWEKIGLRIGISTGDYESR---DEHLGDCDIIVTTSEKADSLIRNRASW----IKAVS 140 Query 127 LIVVDECHH--THKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS 169 +VVDE H + K I+ K++R +V+GL+A+ Sbjct 141 CLVVDEIHLLDSEKRGATLEILV----TKMRRMNKALRVIGLSAT 181 Score = 45.2 bits (105), Expect = 0.002, Method: Composition-based stats. Identities = 29/169 (17%), Positives = 60/169 (36%), Gaps = 32/169 (19%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQ-------QQQGLQTVDI---- 398 K E L + + + ++F TR+ A + L + +GL+ + Sbjct 230 KFEELVEE-----CVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENE 284 Query 399 -----RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV 453 + + G + + ++ V F+ G + ++VAT G+++P V+ Sbjct 285 GEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVI 344 Query 454 V----RYGLLTNEIS---MVQARGRARAD----QSVYAFVATEGSRELK 491 V R+ + I Q GRA + + + RE+ Sbjct 345 VRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIA 393 >sp|A4W1F7|UVRB_STRS2 UvrABC system protein B OS=Streptococcus suis (strain 98HAH33) OX=391296 GN=uvrB PE=3 SV=1 Length=661 Score = 81.4 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 30/167 (18%), Positives = 68/167 (41%), Gaps = 20/167 (12%) Query 365 SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI 424 R I T T++ A L +L++ +G + + ++ E+I Sbjct 448 EKGERTFITTLTKKMAEDLTDYLKE--------------MGVKVKYMHSDIKTLERTEII 493 Query 425 QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVY 479 + + G ++L+ ++ EG+D+P ++V L NE ++Q GRA + + Sbjct 494 RDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSEGH 553 Query 480 AFVATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDL 525 + + + +++ + A ++ A + + +IRDL Sbjct 554 VIMYADKVTESMRKAMEETARRRQIQMAYNEEHGIIPQTIKKEIRDL 600 >sp|A7Z985|UVRB_BACVZ UvrABC system protein B OS=Bacillus velezensis (strain DSM 23117 / BGSC 10A6 / LMG 26770 / FZB42) OX=326423 GN=uvrB PE=3 SV=1 Length=661 Score = 81.4 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 73/187 (39%), Gaps = 20/187 (11%) Query 365 SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI 424 + R ++ T T++ + L +L++ IG + + + ++ E+I Sbjct 443 ERNERVLVTTLTKKMSEDLTDYLKE--------------IGIKVNYLHSEIKTLERIEII 488 Query 425 QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVY 479 + + G ++L+ ++ EGLDIP ++V L +E S++Q GRA + Sbjct 489 RDLRLGKHDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAEGR 548 Query 480 AFVATEGSRELKRELINE-ALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAA 538 + + INE ++ + + +IRD+ +A + Sbjct 549 VIMYADKITNSMEIAINETKRRREQQERFNEIHGITPQTINKEIRDVIRATQAAEDKEEY 608 Query 539 QRENQRQ 545 + + + Sbjct 609 KTKAAPK 615 >sp|C0MDC6|UVRB_STRS7 UvrABC system protein B OS=Streptococcus equi subsp. zooepidemicus (strain H70) OX=553483 GN=uvrB PE=3 SV=1 Length=663 Score = 81.4 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 35/205 (17%), Positives = 76/205 (37%), Gaps = 21/205 (10%) Query 349 PKLEMLEKILQRQ-FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG 407 P + ++ +L R I T T++ A L +L++ +G Sbjct 431 PSMGQMDDLLGEINLRIERGERTFITTLTKKMAEDLTDYLKE--------------MGVK 476 Query 408 NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNE 462 + + ++ E+I+ + G ++L+ ++ EG+D+P ++V L NE Sbjct 477 VKYMHSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNE 536 Query 463 ISMVQARGRARADQSVYAFVATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAK 521 ++Q GRA + + + + + ++R + A ++ A + + Sbjct 537 RGLIQTIGRAARNADGHVIMYADRMTDSMQRAIDETARRRAIQMAYNEEHGIIPQTIKKD 596 Query 522 IRDLQQAALTKRAAQAAQRENQRQQ 546 IRDL + A N Sbjct 597 IRDLISISRAVEAKATEAETNYESM 621 >sp|A7ZW09|RAPA_ECOHS RNA polymerase-associated protein RapA OS=Escherichia coli O9:H4 (strain HS) OX=331112 GN=rapA PE=3 SV=1 Length=968 Score = 81.4 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 80/476 (17%), Positives = 152/476 (32%), Gaps = 44/476 (9%) Query 5 SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ 62 +Q + +++ G GKT A + + L + +V+++V L Q Sbjct 156 PHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVP-ETLQHQ 214 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 E R + R+ + + + L+IC+ L A S + EH+ Sbjct 215 WLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICS---LDFARRSKQRLEHLCE 271 Query 123 TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG 180 + L+VVDE HH +D + Q A+ +P VL LTA+P + G Sbjct 272 AEWDLLVVDEAHHLVWSEDAPSRE-----YQAIEQLAEHVPGVLLLTATP------EQLG 320 Query 181 AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI 240 +H +L LD + + + +P D L L + I Sbjct 321 MESHFARL-RLLDPNRFHDFAQFVEE--QKNYRPVADAVAMLLAGNKLSNDELNMLGEMI 377 Query 241 HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV 300 + P L Q + + + RV + R + Sbjct 378 GEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIK 437 Query 301 DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG---PENPKLEMLEKI 357 L + AE R + + + +P++E L Sbjct 438 LPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGY 497 Query 358 LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ 417 L S + ++ +A L L++++G++ M+ Sbjct 498 LTSH----RSQKVLVICAKAATALQLEQVLREREGIRAAVFH-------------EGMSI 540 Query 418 RDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 ++ F +D +L+ + + EG + + +V + L N + Q GR Sbjct 541 IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR 596 >sp|Q0E2Q3|IF4A2_ORYSJ Putative eukaryotic initiation factor 4A-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0221300 PE=3 SV=2 Length=416 Score = 80.2 bits (196), Expect = 1e-14, Method: Composition-based stats. Identities = 35/167 (21%), Positives = 66/167 (40%), Gaps = 20/167 (12%) Query 347 ENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA 406 E+ KL+ L + F + R IIF TR A SL ++ + G Sbjct 269 EDCKLDKLCGL----FDTMEITRSIIFVNTRHHAKSLTEKIRGK--------------GY 310 Query 407 GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV 466 S+ + QR + + +Q+FQ G+ +L+ T + G+D+ + Y L T + + Sbjct 311 TVSAIHGGIHQRARDKAVQEFQSGSSRILITTDL--RGIDVLRAPAAIFYDLPTQPVCYL 368 Query 467 QARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM 513 + + + A + E I + T +E+ + V + Sbjct 369 RHVQSGQHGRKGVAISFITSTDERVFSTIQKFCNTQIEELPSNVADL 415 >sp|Q6CTN7|MAK5_KLULA ATP-dependent RNA helicase MAK5 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=MAK5 PE=3 SV=1 Length=796 Score = 81.4 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 46/125 (37%), Gaps = 23/125 (18%) Query 370 GIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQD 429 ++F S L +L + + + M Q+++ ++KF++ Sbjct 513 TLVFCNAIDSVKKLNAFLNNLK--------------ISSFQIHSSMAQKNRLRNLEKFKE 558 Query 430 --------GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYA 480 G +L+A+ VA GLDI V+ Y L + + GR AR D + Sbjct 559 QSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVS 618 Query 481 FVATE 485 + Sbjct 619 VMICS 623 Score = 55.2 bits (131), Expect = 2e-06, Method: Composition-based stats. Identities = 24/143 (17%), Positives = 51/143 (36%), Gaps = 11/143 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAA-AYVAKRHLETVDGAKVV--VLVNRVHLVTQ- 62 Q + I AL+G NI+ TG+GKT A + ++ ++ + + + L Q Sbjct 246 QLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIKDTSNDRSIGLIFTPTRELAHQV 305 Query 63 ----HGEEFRRMLDGRWTVTTLSGDMGPRAGFG--HLARCHDLLICTAELLQMALTSPEE 116 + ++T+ +L+G + + +++ T L Sbjct 306 TDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSGRIIVATPGRFLE-LLERNP 364 Query 117 EEHVELTVFSLIVVDECHHTHKD 139 + +V+DE +D Sbjct 365 DLIPRFAKIDTLVLDEADRLLQD 387 Score = 36.7 bits (83), Expect = 0.93, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 43/90 (48%), Gaps = 10/90 (11%) Query 351 LEMLEKILQRQFSSSNSPRGI--IFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN 408 L I+++ +++ R I IFT TR+ AH + LQ+ + +L Sbjct 271 LAYGIPIIEQLIKDTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTIL----- 325 Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVAT 438 S + ++ + Q+ +++ DG+ ++VAT Sbjct 326 -SLTGGLSIQKQERILKY--DGSGRIIVAT 352 >sp|Q5BBY1|HAS1_EMENI ATP-dependent RNA helicase has1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=has1 PE=3 SV=1 Length=609 Score = 81.0 bits (198), Expect = 1e-14, Method: Composition-based stats. Identities = 34/204 (17%), Positives = 69/204 (34%), Gaps = 31/204 (15%) Query 294 HDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEM 353 D +R + + +D R+ + + + LA R L H E+ +E Sbjct 293 EDEMRQIIKILPNED---RQTMLFSATQTTKVEDLARISLRPGPLYINVDHRKEHSTVEG 349 Query 354 LEK------------ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQ 401 LE+ +L + + I+F + + L +D+ Sbjct 350 LEQGYVICEADKRFLLLFSFLKRNLKKKIIVFFSSCNCVK------YHAELLNYIDLPVL 403 Query 402 LLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTN 461 L G Q+ + +F + +L+ T VA GLDIP + ++++ + Sbjct 404 DLHG--------KQKQQKRTNTFFEFCNAKQGVLICTDVAARGLDIPAVDWIIQFDPPDD 455 Query 462 EISMVQARGRA--RADQSVYAFVA 483 + GR A+ + + Sbjct 456 TRDYIHRVGRTARGANGRGRSLMF 479 Score = 54.8 bits (130), Expect = 2e-06, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 47/135 (35%), Gaps = 9/135 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT---RAAAYVAKRHLETVD--GAKVVVLVNRVHLVT 61 Q I P L G++++ TG+GKT A L G V+V+ L Sbjct 155 QQRTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEMLSALRFKPRNGTGVIVVSPTRELAL 214 Query 62 QHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 Q R +L + G RA L + +LLI T L L + Sbjct 215 QIFGVARELLTAHSQTYGIVIGGANRRAEAEKLTKGVNLLIATPGRLLDHLQNTPGFVFK 274 Query 121 ELTVFSLIVVDECHH 135 L +V+DE Sbjct 275 NLKT---LVIDEADR 286 >sp|C3LR47|RAPA_VIBCM RNA polymerase-associated protein RapA OS=Vibrio cholerae serotype O1 (strain M66-2) OX=579112 GN=rapA PE=3 SV=1 Length=969 Score = 81.4 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 94/555 (17%), Positives = 185/555 (33%), Gaps = 70/555 (13%) Query 5 SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ 62 +Q + +++ G GKT A + + + T +++++V L Q Sbjct 156 PHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQVLTGRAERILIVVP-ETLQHQ 214 Query 63 H----GEEFR---RMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE 115 F + D V S P ++ D L + + + AL + Sbjct 215 WLVEMMRRFNLHFSIFDEERCVEAFSEADNPFETQQYVLCSLDFLRKSRQRFEQALEAEW 274 Query 116 EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGA 175 L+VVDE HH + S+ ++ A+ P VL LTA+P Sbjct 275 ----------DLLVVDEAHH-LEWHP--EKPSREYQVIEALAEQTPGVLLLTATP----- 316 Query 176 SKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQ-PCKQYNLCHRRSQDPFGDLLK 234 + G +H +L LD + + ++++ + D + + Sbjct 317 -EQLGRESHFARL-RLLDADRFYDYEAFVKEEEQYAPVADAVTALFSGEKLSDEAKNKIT 374 Query 235 KLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIH 294 +L+ + ++ L + + E ++ L+ + L ++ L R A + Sbjct 375 ELLSE----QDVEPLFKALESHASEDEIA-LARQELIDNLMDRHGTGRVLFRNTRAAIKG 429 Query 295 DTVRAVDALAALQDFYHREHVTKTQILC----AERRLLALFDDRKNELAHLATHGPENP- 349 VR V L + + +L E R + + E G E+ Sbjct 430 FPVRNVHLLPLEIPSQYTTSMRVAGMLGGKLTPEARAMKML---YPEEIFQEFEGEESSW 486 Query 350 -KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN 408 + + L + + S + ++ +A L L++++G IRA + Sbjct 487 WQFDSRVNWLLEKVKAKRSEKILVIASRASTALQLEQALREREG-----IRATVF----- 536 Query 409 SSQSTHMTQRDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV 466 M+ ++ + F ++G +L+ + + EG + N +V + L N + Sbjct 537 ---HEGMSIIERDKAAAYFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLE 593 Query 467 QARGR-----ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK 521 Q GR + D VY TE S+ + E L E +A Y A Sbjct 594 QRIGRLDRIGQKRDIDVYVPYLTETSQAILARWFQEGLNAFAETCPTG-----RAVYDAF 648 Query 522 IRDLQQAALTKRAAQ 536 L + Sbjct 649 AERLIPILAAGGGEE 663 >sp|Q9KP70|RAPA_VIBCH RNA polymerase-associated protein RapA OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) OX=243277 GN=rapA PE=3 SV=1 Length=969 Score = 81.4 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 94/555 (17%), Positives = 185/555 (33%), Gaps = 70/555 (13%) Query 5 SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ 62 +Q + +++ G GKT A + + + T +++++V L Q Sbjct 156 PHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQVLTGRAERILIVVP-ETLQHQ 214 Query 63 H----GEEFR---RMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE 115 F + D V S P ++ D L + + + AL + Sbjct 215 WLVEMMRRFNLHFSIFDEERCVEAFSEADNPFETQQYVLCSLDFLRKSRQRFEQALEAEW 274 Query 116 EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGA 175 L+VVDE HH + S+ ++ A+ P VL LTA+P Sbjct 275 ----------DLLVVDEAHH-LEWHP--EKPSREYQVIEALAEQTPGVLLLTATP----- 316 Query 176 SKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQ-PCKQYNLCHRRSQDPFGDLLK 234 + G +H +L LD + + ++++ + D + + Sbjct 317 -EQLGRESHFARL-RLLDADRFYDYEAFVKEEEQYAPVADAVTALFSGEKLSDEAKNKIT 374 Query 235 KLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIH 294 +L+ + ++ L + + E ++ L+ + L ++ L R A + Sbjct 375 ELLSE----QDVEPLFKALESHASEDEIA-LARQELIDNLMDRHGTGRVLFRNTRAAIKG 429 Query 295 DTVRAVDALAALQDFYHREHVTKTQILC----AERRLLALFDDRKNELAHLATHGPENP- 349 VR V L + + +L E R + + E G E+ Sbjct 430 FPVRNVHLLPLEIPSQYTTSMRVAGMLGGKLTPEARAMKML---YPEEIFQEFEGEESSW 486 Query 350 -KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN 408 + + L + + S + ++ +A L L++++G IRA + Sbjct 487 WQFDSRVNWLLEKVKAKRSEKILVIASRASTALQLEQALREREG-----IRATVF----- 536 Query 409 SSQSTHMTQRDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV 466 M+ ++ + F ++G +L+ + + EG + N +V + L N + Sbjct 537 ---HEGMSIIERDKAAAYFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLE 593 Query 467 QARGR-----ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK 521 Q GR + D VY TE S+ + E L E +A Y A Sbjct 594 QRIGRLDRIGQKRDIDVYVPYLTETSQAILARWFQEGLNAFAETCPTG-----RAVYDAF 648 Query 522 IRDLQQAALTKRAAQ 536 L + Sbjct 649 AERLIPILAAGGGEE 663 >sp|Q4HZ68|DBP7_GIBZE ATP-dependent RNA helicase DBP7 OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=DBP7 PE=3 SV=1 Length=744 Score = 81.4 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 43/253 (17%), Positives = 76/253 (30%), Gaps = 32/253 (13%) Query 314 HVTKTQILCAERRLLALFDDRKNELAHLATHG-----PENPKLEMLEKILQRQFSSSNSP 368 + L A++ + L + A H P +L L L+ FS Sbjct 375 SLADATFLAAKKEDMELDVQKSEMKAPAQLHQYYSVVPAKLRLVTLISYLKSTFSRRGKT 434 Query 369 -RGIIFTRTRQSAHSLLLWLQQQQGLQTV------------DIRAQLLIGAGNSSQ---- 411 + IIF S L+ + + I + S + Sbjct 435 MKAIIFISCADSVDFHYELLRDPNTTEAPVAASKEAESISKTVSKAAYITSPASPEVVLH 494 Query 412 --STHMTQRDQQEVIQKFQDGTLN-LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQA 468 ++Q + ++ F LL+ T V+ GLDIP ++V+ Y + + Sbjct 495 RMHGSLSQPIRTATLKSFSACKSPSLLITTDVSSRGLDIPSVDLVIEYDPAFSFADHIHR 554 Query 469 RGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQ 527 GR ARA + A + L +E + Q D + + L+ Sbjct 555 VGRTARAGKPGDALLF------LLPGTEEGYIELMKGSTTPTSQSYDSILQKGMMTKLEF 608 Query 528 AALTKRAAQAAQR 540 T + Sbjct 609 PVETTAKPEDGHS 621 Score = 56.0 bits (133), Expect = 1e-06, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 44/124 (35%), Gaps = 16/124 (13%) Query 22 IWLPTGAGKTRAAAYVAKR-----------HLETVDGAKVVVLVNRVHLVTQHGEEFRRM 70 + TG+GKT A + GA +++ L Q ++ Sbjct 193 VQAETGSGKTLAYLLPILHRVLLLSVKGGAQIHRDSGAFAIIVAPTRELAKQVHTVLEKL 252 Query 71 LD--GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLI 128 + T ++G +A + + + L+ T L + + + + L++ + Sbjct 253 IRPFPWLVSTAITGGESKKAEKARIRKGVNFLVATPGRLADHIDNTKA---LNLSIVRWL 309 Query 129 VVDE 132 ++DE Sbjct 310 ILDE 313 >sp|B7MNR6|RAPA_ECO81 RNA polymerase-associated protein RapA OS=Escherichia coli O81 (strain ED1a) OX=585397 GN=rapA PE=3 SV=1 Length=968 Score = 81.4 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 80/476 (17%), Positives = 152/476 (32%), Gaps = 44/476 (9%) Query 5 SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ 62 +Q + +++ G GKT A + + L + +V+++V L Q Sbjct 156 PHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVP-ETLQHQ 214 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 E R + R+ + + + L+IC+ L A S + EH+ Sbjct 215 WLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICS---LDFARRSKQRLEHLCE 271 Query 123 TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG 180 + L+VVDE HH +D + Q A+ +P VL LTA+P + G Sbjct 272 AEWDLLVVDEAHHLVWSEDAPSRE-----YQAIEQLAEHVPGVLLLTATP------EQLG 320 Query 181 AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI 240 +H +L LD + + + +P D L L + I Sbjct 321 MESHFARL-RLLDPNRFHDFAQFVEE--QKNYRPVADAVAMLLAGNKLSNDELNMLGEMI 377 Query 241 HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV 300 + P L Q + + + RV + R + Sbjct 378 GEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIK 437 Query 301 DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG---PENPKLEMLEKI 357 L + AE R + + + +P++E L Sbjct 438 LPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGY 497 Query 358 LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ 417 L S + ++ +A L L++++G++ M+ Sbjct 498 LTSH----RSQKVLVICAKAATALQLEQVLREREGIRAAVFH-------------EGMSI 540 Query 418 RDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 ++ F +D +L+ + + EG + + +V + L N + Q GR Sbjct 541 IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR 596 >sp|A5F5C5|RAPA_VIBC3 RNA polymerase-associated protein RapA OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395) OX=345073 GN=rapA PE=3 SV=1 Length=969 Score = 81.4 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 94/555 (17%), Positives = 185/555 (33%), Gaps = 70/555 (13%) Query 5 SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ 62 +Q + +++ G GKT A + + + T +++++V L Q Sbjct 156 PHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQVLTGRAERILIVVP-ETLQHQ 214 Query 63 H----GEEFR---RMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE 115 F + D V S P ++ D L + + + AL + Sbjct 215 WLVEMMRRFNLHFSIFDEERCVEAFSEADNPFETQQYVLCSLDFLRKSRQRFEQALEAEW 274 Query 116 EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGA 175 L+VVDE HH + S+ ++ A+ P VL LTA+P Sbjct 275 ----------DLLVVDEAHH-LEWHP--EKPSREYQVIEALAEQTPGVLLLTATP----- 316 Query 176 SKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQ-PCKQYNLCHRRSQDPFGDLLK 234 + G +H +L LD + + ++++ + D + + Sbjct 317 -EQLGRESHFARL-RLLDADRFYDYEAFVKEEEQYAPVADAVTALFSGEKLSDEAKNKIT 374 Query 235 KLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIH 294 +L+ + ++ L + + E ++ L+ + L ++ L R A + Sbjct 375 ELLSE----QDVEPLFKALESHASEDEIA-LARQELIDNLMDRHGTGRVLFRNTRAAIKG 429 Query 295 DTVRAVDALAALQDFYHREHVTKTQILC----AERRLLALFDDRKNELAHLATHGPENP- 349 VR V L + + +L E R + + E G E+ Sbjct 430 FPVRNVHLLPLEIPSQYTTSMRVAGMLGGKLTPEARAMKML---YPEEIFQEFEGDESSW 486 Query 350 -KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN 408 + + L + + S + ++ +A L L++++G IRA + Sbjct 487 WQFDSRVNWLLEKVKAKRSEKILVIASRASTALQLEQALREREG-----IRATVF----- 536 Query 409 SSQSTHMTQRDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV 466 M+ ++ + F ++G +L+ + + EG + N +V + L N + Sbjct 537 ---HEGMSIIERDKAAAYFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLE 593 Query 467 QARGR-----ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK 521 Q GR + D VY TE S+ + E L E +A Y A Sbjct 594 QRIGRLDRIGQKRDIDVYVPYLTETSQAILARWFQEGLNAFAETCPTG-----RAVYDAF 648 Query 522 IRDLQQAALTKRAAQ 536 L + Sbjct 649 AERLIPILAAGGGEE 663 >sp|A2Q9T6|HAS1_ASPNC ATP-dependent RNA helicase has1 OS=Aspergillus niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) OX=425011 GN=has1 PE=3 SV=1 Length=606 Score = 81.0 bits (198), Expect = 1e-14, Method: Composition-based stats. Identities = 42/260 (16%), Positives = 85/260 (33%), Gaps = 44/260 (17%) Query 253 FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHR 312 G + KL++ L R+ HL+ + + +D + + Sbjct 232 IGGANRRAEAEKLTKGVNLLIATPGRLLD-HLQNTPGFVFKNLKTLVIDEADRILEVGFE 290 Query 313 EHVTK-TQILCAERRLLALFDD----RKNELAHLAT----------HGPENPKLEMLEK- 356 + + + +IL +E R LF + +LA ++ H E+ +E LE+ Sbjct 291 DEMRQIVKILPSEERQTMLFSATQTTKVEDLARISLRPGPLYINVDHRKEHSTVEGLEQG 350 Query 357 -----------ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 +L + + I+F + + L +D+ L G Sbjct 351 YVICEADKRFLLLFSFLKRNLKKKIIVFFSSCNCVK------YHAELLNYIDLPVLELHG 404 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465 Q+ + +F + L+ T VA GLDIP + ++++ + Sbjct 405 --------KQKQQKRTNTFFEFCNAKQGTLICTDVAARGLDIPAVDWIIQFDPPDDTRDY 456 Query 466 VQARGRARAD--QSVYAFVA 483 V GR + + Sbjct 457 VHRVGRTARGVNGKGRSLMF 476 Score = 52.9 bits (125), Expect = 8e-06, Method: Composition-based stats. Identities = 32/135 (24%), Positives = 45/135 (33%), Gaps = 9/135 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT---RAAAYVAKRHLETVDGAKVVVLV--NRVHLVT 61 Q I P L G++++ TG+GKT A L VLV L Sbjct 152 QQRTIPPLLAGRDVLGAAKTGSGKTLSFLIPAVEMLSALRFKPRNGTGVLVVSPTRELAL 211 Query 62 QHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 Q R ++ + G RA L + +LLI T L L + Sbjct 212 QIFGVARELMAHHSQTYGIVIGGANRRAEAEKLTKGVNLLIATPGRLLDHLQNTPGFVFK 271 Query 121 ELTVFSLIVVDECHH 135 L +V+DE Sbjct 272 NLKT---LVIDEADR 283 >sp|Q3Z5V2|RAPA_SHISS RNA polymerase-associated protein RapA OS=Shigella sonnei (strain Ss046) OX=300269 GN=rapA PE=3 SV=1 Length=968 Score = 81.4 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 80/476 (17%), Positives = 152/476 (32%), Gaps = 44/476 (9%) Query 5 SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ 62 +Q + +++ G GKT A + + L + +V+++V L Q Sbjct 156 PHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVP-ETLQHQ 214 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 E R + R+ + + + L+IC+ L A S + EH+ Sbjct 215 WLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICS---LDFARRSKQRLEHLCE 271 Query 123 TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG 180 + L+VVDE HH +D + Q A+ +P VL LTA+P + G Sbjct 272 AEWDLLVVDEAHHLVWSEDAPSRE-----YQAIEQLAEHVPGVLLLTATP------EQLG 320 Query 181 AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI 240 +H +L LD + + + +P D L L + I Sbjct 321 MESHFARL-RLLDPNRFHDFAQFVEE--QKNYRPVADAVAMLLAGNKLSNDELNMLGEMI 377 Query 241 HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV 300 + P L Q + + + RV + R + Sbjct 378 GEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIK 437 Query 301 DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG---PENPKLEMLEKI 357 L + AE R + + + +P++E L Sbjct 438 LPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGY 497 Query 358 LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ 417 L S + ++ +A L L++++G++ M+ Sbjct 498 LTSH----RSQKVLVICAKAATALQLEQVLREREGIRAAVFH-------------EGMSI 540 Query 418 RDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 ++ F +D +L+ + + EG + + +V + L N + Q GR Sbjct 541 IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR 596 >sp|Q7UDT5|RAPA_SHIFL RNA polymerase-associated protein RapA OS=Shigella flexneri OX=623 GN=rapA PE=3 SV=3 Length=968 Score = 81.4 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 80/476 (17%), Positives = 152/476 (32%), Gaps = 44/476 (9%) Query 5 SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ 62 +Q + +++ G GKT A + + L + +V+++V L Q Sbjct 156 PHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVP-ETLQHQ 214 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 E R + R+ + + + L+IC+ L A S + EH+ Sbjct 215 WLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICS---LDFARRSKQRLEHLCE 271 Query 123 TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG 180 + L+VVDE HH +D + Q A+ +P VL LTA+P + G Sbjct 272 AEWDLLVVDEAHHLVWSEDAPSRE-----YQAIEQLAEHVPGVLLLTATP------EQLG 320 Query 181 AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI 240 +H +L LD + + + +P D L L + I Sbjct 321 MESHFARL-RLLDPNRFHDFAQFVEE--QKNYRPVADAVAMLLAGNKLSNDELNMLGEMI 377 Query 241 HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV 300 + P L Q + + + RV + R + Sbjct 378 GEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIK 437 Query 301 DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG---PENPKLEMLEKI 357 L + AE R + + + +P++E L Sbjct 438 LPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGY 497 Query 358 LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ 417 L S + ++ +A L L++++G++ M+ Sbjct 498 LTSH----RSQKVLVICAKAATALQLEQVLREREGIRAAVFH-------------EGMSI 540 Query 418 RDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 ++ F +D +L+ + + EG + + +V + L N + Q GR Sbjct 541 IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR 596 >sp|Q0T8D8|RAPA_SHIF8 RNA polymerase-associated protein RapA OS=Shigella flexneri serotype 5b (strain 8401) OX=373384 GN=rapA PE=3 SV=1 Length=968 Score = 81.4 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 80/476 (17%), Positives = 152/476 (32%), Gaps = 44/476 (9%) Query 5 SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ 62 +Q + +++ G GKT A + + L + +V+++V L Q Sbjct 156 PHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVP-ETLQHQ 214 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 E R + R+ + + + L+IC+ L A S + EH+ Sbjct 215 WLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICS---LDFARRSKQRLEHLCE 271 Query 123 TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG 180 + L+VVDE HH +D + Q A+ +P VL LTA+P + G Sbjct 272 AEWDLLVVDEAHHLVWSEDAPSRE-----YQAIEQLAEHVPGVLLLTATP------EQLG 320 Query 181 AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI 240 +H +L LD + + + +P D L L + I Sbjct 321 MESHFARL-RLLDPNRFHDFAQFVEE--QKNYRPVADAVAMLLAGNKLSNDELNMLGEMI 377 Query 241 HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV 300 + P L Q + + + RV + R + Sbjct 378 GEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIK 437 Query 301 DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG---PENPKLEMLEKI 357 L + AE R + + + +P++E L Sbjct 438 LPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGY 497 Query 358 LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ 417 L S + ++ +A L L++++G++ M+ Sbjct 498 LTSH----RSQKVLVICAKAATALQLEQVLREREGIRAAVFH-------------EGMSI 540 Query 418 RDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 ++ F +D +L+ + + EG + + +V + L N + Q GR Sbjct 541 IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR 596 >sp|B2U265|RAPA_SHIB3 RNA polymerase-associated protein RapA OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) OX=344609 GN=rapA PE=3 SV=1 Length=968 Score = 81.4 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 80/476 (17%), Positives = 152/476 (32%), Gaps = 44/476 (9%) Query 5 SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ 62 +Q + +++ G GKT A + + L + +V+++V L Q Sbjct 156 PHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVP-ETLQHQ 214 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 E R + R+ + + + L+IC+ L A S + EH+ Sbjct 215 WLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICS---LDFARRSKQRLEHLCE 271 Query 123 TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG 180 + L+VVDE HH +D + Q A+ +P VL LTA+P + G Sbjct 272 AEWDLLVVDEAHHLVWSEDAPSRE-----YQAIEQLAEHVPGVLLLTATP------EQLG 320 Query 181 AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI 240 +H +L LD + + + +P D L L + I Sbjct 321 MESHFARL-RLLDPNRFHDFAQFVEE--QKNYRPVADAVAMLLAGNKLSNDELNMLGEMI 377 Query 241 HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV 300 + P L Q + + + RV + R + Sbjct 378 GEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIK 437 Query 301 DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG---PENPKLEMLEKI 357 L + AE R + + + +P++E L Sbjct 438 LPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGY 497 Query 358 LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ 417 L S + ++ +A L L++++G++ M+ Sbjct 498 LTSH----RSQKVLVICAKAATALQLEQVLREREGIRAAVFH-------------EGMSI 540 Query 418 RDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 ++ F +D +L+ + + EG + + +V + L N + Q GR Sbjct 541 IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR 596 >sp|Q1RGE0|RAPA_ECOUT RNA polymerase-associated protein RapA OS=Escherichia coli (strain UTI89 / UPEC) OX=364106 GN=rapA PE=3 SV=1 Length=968 Score = 81.4 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 80/476 (17%), Positives = 152/476 (32%), Gaps = 44/476 (9%) Query 5 SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ 62 +Q + +++ G GKT A + + L + +V+++V L Q Sbjct 156 PHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVP-ETLQHQ 214 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 E R + R+ + + + L+IC+ L A S + EH+ Sbjct 215 WLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICS---LDFARRSKQRLEHLCE 271 Query 123 TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG 180 + L+VVDE HH +D + Q A+ +P VL LTA+P + G Sbjct 272 AEWDLLVVDEAHHLVWSEDAPSRE-----YQAIEQLAEHVPGVLLLTATP------EQLG 320 Query 181 AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI 240 +H +L LD + + + +P D L L + I Sbjct 321 MESHFARL-RLLDPNRFHDFAQFVEE--QKNYRPVADAVAMLLAGNKLSNDELNMLGEMI 377 Query 241 HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV 300 + P L Q + + + RV + R + Sbjct 378 GEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIK 437 Query 301 DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG---PENPKLEMLEKI 357 L + AE R + + + +P++E L Sbjct 438 LPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGY 497 Query 358 LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ 417 L S + ++ +A L L++++G++ M+ Sbjct 498 LTSH----RSQKVLVICAKAATALQLEQVLREREGIRAAVFH-------------EGMSI 540 Query 418 RDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 ++ F +D +L+ + + EG + + +V + L N + Q GR Sbjct 541 IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR 596 >sp|B1LFZ3|RAPA_ECOSM RNA polymerase-associated protein RapA OS=Escherichia coli (strain SMS-3-5 / SECEC) OX=439855 GN=rapA PE=3 SV=1 Length=968 Score = 81.4 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 80/476 (17%), Positives = 152/476 (32%), Gaps = 44/476 (9%) Query 5 SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ 62 +Q + +++ G GKT A + + L + +V+++V L Q Sbjct 156 PHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVP-ETLQHQ 214 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 E R + R+ + + + L+IC+ L A S + EH+ Sbjct 215 WLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICS---LDFARRSKQRLEHLCE 271 Query 123 TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG 180 + L+VVDE HH +D + Q A+ +P VL LTA+P + G Sbjct 272 AEWDLLVVDEAHHLVWSEDAPSRE-----YQAIEQLAEHVPGVLLLTATP------EQLG 320 Query 181 AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI 240 +H +L LD + + + +P D L L + I Sbjct 321 MESHFARL-RLLDPNRFHDFAQFVEE--QKNYRPVADAVAMLLAGNKLSNDELNMLGEMI 377 Query 241 HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV 300 + P L Q + + + RV + R + Sbjct 378 GEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIK 437 Query 301 DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG---PENPKLEMLEKI 357 L + AE R + + + +P++E L Sbjct 438 LPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGY 497 Query 358 LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ 417 L S + ++ +A L L++++G++ M+ Sbjct 498 LTSH----RSQKVLVICAKAATALQLEQVLREREGIRAAVFH-------------EGMSI 540 Query 418 RDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 ++ F +D +L+ + + EG + + +V + L N + Q GR Sbjct 541 IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR 596 >sp|B6HZ39|RAPA_ECOSE RNA polymerase-associated protein RapA OS=Escherichia coli (strain SE11) OX=409438 GN=rapA PE=3 SV=1 Length=968 Score = 81.4 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 80/476 (17%), Positives = 152/476 (32%), Gaps = 44/476 (9%) Query 5 SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ 62 +Q + +++ G GKT A + + L + +V+++V L Q Sbjct 156 PHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVP-ETLQHQ 214 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 E R + R+ + + + L+IC+ L A S + EH+ Sbjct 215 WLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICS---LDFARRSKQRLEHLCE 271 Query 123 TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG 180 + L+VVDE HH +D + Q A+ +P VL LTA+P + G Sbjct 272 AEWDLLVVDEAHHLVWSEDAPSRE-----YQAIEQLAEHVPGVLLLTATP------EQLG 320 Query 181 AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI 240 +H +L LD + + + +P D L L + I Sbjct 321 MESHFARL-RLLDPNRFHDFAQFVEE--QKNYRPVADAVAMLLAGNKLSNDELNMLGEMI 377 Query 241 HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV 300 + P L Q + + + RV + R + Sbjct 378 GEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIK 437 Query 301 DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG---PENPKLEMLEKI 357 L + AE R + + + +P++E L Sbjct 438 LPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGY 497 Query 358 LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ 417 L S + ++ +A L L++++G++ M+ Sbjct 498 LTSH----RSQKVLVICAKAATALQLEQVLREREGIRAAVFH-------------EGMSI 540 Query 418 RDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 ++ F +D +L+ + + EG + + +V + L N + Q GR Sbjct 541 IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR 596 >sp|B7N7T3|RAPA_ECOLU RNA polymerase-associated protein RapA OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) OX=585056 GN=rapA PE=3 SV=1 Length=968 Score = 81.4 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 80/476 (17%), Positives = 152/476 (32%), Gaps = 44/476 (9%) Query 5 SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ 62 +Q + +++ G GKT A + + L + +V+++V L Q Sbjct 156 PHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVP-ETLQHQ 214 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 E R + R+ + + + L+IC+ L A S + EH+ Sbjct 215 WLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICS---LDFARRSKQRLEHLCE 271 Query 123 TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG 180 + L+VVDE HH +D + Q A+ +P VL LTA+P + G Sbjct 272 AEWDLLVVDEAHHLVWSEDAPSRE-----YQAIEQLAEHVPGVLLLTATP------EQLG 320 Query 181 AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI 240 +H +L LD + + + +P D L L + I Sbjct 321 MESHFARL-RLLDPNRFHDFAQFVEE--QKNYRPVADAVAMLLAGNKLSNDELNMLGEMI 377 Query 241 HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV 300 + P L Q + + + RV + R + Sbjct 378 GEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIK 437 Query 301 DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG---PENPKLEMLEKI 357 L + AE R + + + +P++E L Sbjct 438 LPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGY 497 Query 358 LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ 417 L S + ++ +A L L++++G++ M+ Sbjct 498 LTSH----RSQKVLVICAKAATALQLEQVLREREGIRAAVFH-------------EGMSI 540 Query 418 RDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 ++ F +D +L+ + + EG + + +V + L N + Q GR Sbjct 541 IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR 596 >sp|P60240|RAPA_ECOLI RNA polymerase-associated protein RapA OS=Escherichia coli (strain K12) OX=83333 GN=rapA PE=1 SV=2 Length=968 Score = 81.4 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 80/476 (17%), Positives = 152/476 (32%), Gaps = 44/476 (9%) Query 5 SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ 62 +Q + +++ G GKT A + + L + +V+++V L Q Sbjct 156 PHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVP-ETLQHQ 214 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 E R + R+ + + + L+IC+ L A S + EH+ Sbjct 215 WLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICS---LDFARRSKQRLEHLCE 271 Query 123 TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG 180 + L+VVDE HH +D + Q A+ +P VL LTA+P + G Sbjct 272 AEWDLLVVDEAHHLVWSEDAPSRE-----YQAIEQLAEHVPGVLLLTATP------EQLG 320 Query 181 AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI 240 +H +L LD + + + +P D L L + I Sbjct 321 MESHFARL-RLLDPNRFHDFAQFVEE--QKNYRPVADAVAMLLAGNKLSNDELNMLGEMI 377 Query 241 HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV 300 + P L Q + + + RV + R + Sbjct 378 GEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIK 437 Query 301 DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG---PENPKLEMLEKI 357 L + AE R + + + +P++E L Sbjct 438 LPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGY 497 Query 358 LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ 417 L S + ++ +A L L++++G++ M+ Sbjct 498 LTSH----RSQKVLVICAKAATALQLEQVLREREGIRAAVFH-------------EGMSI 540 Query 418 RDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 ++ F +D +L+ + + EG + + +V + L N + Q GR Sbjct 541 IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR 596 >sp|B1IRB9|RAPA_ECOLC RNA polymerase-associated protein RapA OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks) OX=481805 GN=rapA PE=3 SV=1 Length=968 Score = 81.4 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 80/476 (17%), Positives = 152/476 (32%), Gaps = 44/476 (9%) Query 5 SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ 62 +Q + +++ G GKT A + + L + +V+++V L Q Sbjct 156 PHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVP-ETLQHQ 214 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 E R + R+ + + + L+IC+ L A S + EH+ Sbjct 215 WLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICS---LDFARRSKQRLEHLCE 271 Query 123 TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG 180 + L+VVDE HH +D + Q A+ +P VL LTA+P + G Sbjct 272 AEWDLLVVDEAHHLVWSEDAPSRE-----YQAIEQLAEHVPGVLLLTATP------EQLG 320 Query 181 AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI 240 +H +L LD + + + +P D L L + I Sbjct 321 MESHFARL-RLLDPNRFHDFAQFVEE--QKNYRPVADAVAMLLAGNKLSNDELNMLGEMI 377 Query 241 HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV 300 + P L Q + + + RV + R + Sbjct 378 GEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIK 437 Query 301 DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG---PENPKLEMLEKI 357 L + AE R + + + +P++E L Sbjct 438 LPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGY 497 Query 358 LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ 417 L S + ++ +A L L++++G++ M+ Sbjct 498 LTSH----RSQKVLVICAKAATALQLEQVLREREGIRAAVFH-------------EGMSI 540 Query 418 RDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 ++ F +D +L+ + + EG + + +V + L N + Q GR Sbjct 541 IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR 596 >sp|Q8FL92|RAPA_ECOL6 RNA polymerase-associated protein RapA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=rapA PE=3 SV=3 Length=968 Score = 81.4 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 80/476 (17%), Positives = 152/476 (32%), Gaps = 44/476 (9%) Query 5 SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ 62 +Q + +++ G GKT A + + L + +V+++V L Q Sbjct 156 PHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVP-ETLQHQ 214 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 E R + R+ + + + L+IC+ L A S + EH+ Sbjct 215 WLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICS---LDFARRSKQRLEHLCE 271 Query 123 TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG 180 + L+VVDE HH +D + Q A+ +P VL LTA+P + G Sbjct 272 AEWDLLVVDEAHHLVWSEDAPSRE-----YQAIEQLAEHVPGVLLLTATP------EQLG 320 Query 181 AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI 240 +H +L LD + + + +P D L L + I Sbjct 321 MESHFARL-RLLDPNRFHDFAQFVEE--QKNYRPVADAVAMLLAGNKLSNDELNMLGEMI 377 Query 241 HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV 300 + P L Q + + + RV + R + Sbjct 378 GEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIK 437 Query 301 DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG---PENPKLEMLEKI 357 L + AE R + + + +P++E L Sbjct 438 LPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGY 497 Query 358 LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ 417 L S + ++ +A L L++++G++ M+ Sbjct 498 LTSH----RSQKVLVICAKAATALQLEQVLREREGIRAAVFH-------------EGMSI 540 Query 418 RDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 ++ F +D +L+ + + EG + + +V + L N + Q GR Sbjct 541 IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR 596 >sp|Q0TLT1|RAPA_ECOL5 RNA polymerase-associated protein RapA OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) OX=362663 GN=rapA PE=3 SV=1 Length=968 Score = 81.4 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 80/476 (17%), Positives = 152/476 (32%), Gaps = 44/476 (9%) Query 5 SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ 62 +Q + +++ G GKT A + + L + +V+++V L Q Sbjct 156 PHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVP-ETLQHQ 214 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 E R + R+ + + + L+IC+ L A S + EH+ Sbjct 215 WLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICS---LDFARRSKQRLEHLCE 271 Query 123 TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG 180 + L+VVDE HH +D + Q A+ +P VL LTA+P + G Sbjct 272 AEWDLLVVDEAHHLVWSEDAPSRE-----YQAIEQLAEHVPGVLLLTATP------EQLG 320 Query 181 AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI 240 +H +L LD + + + +P D L L + I Sbjct 321 MESHFARL-RLLDPNRFHDFAQFVEE--QKNYRPVADAVAMLLAGNKLSNDELNMLGEMI 377 Query 241 HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV 300 + P L Q + + + RV + R + Sbjct 378 GEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIK 437 Query 301 DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG---PENPKLEMLEKI 357 L + AE R + + + +P++E L Sbjct 438 LPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGY 497 Query 358 LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ 417 L S + ++ +A L L++++G++ M+ Sbjct 498 LTSH----RSQKVLVICAKAATALQLEQVLREREGIRAAVFH-------------EGMSI 540 Query 418 RDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 ++ F +D +L+ + + EG + + +V + L N + Q GR Sbjct 541 IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR 596 >sp|C4ZPY3|RAPA_ECOBW RNA polymerase-associated protein RapA OS=Escherichia coli (strain K12 / MC4100 / BW2952) OX=595496 GN=rapA PE=3 SV=1 Length=968 Score = 81.4 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 80/476 (17%), Positives = 152/476 (32%), Gaps = 44/476 (9%) Query 5 SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ 62 +Q + +++ G GKT A + + L + +V+++V L Q Sbjct 156 PHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVP-ETLQHQ 214 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 E R + R+ + + + L+IC+ L A S + EH+ Sbjct 215 WLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICS---LDFARRSKQRLEHLCE 271 Query 123 TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG 180 + L+VVDE HH +D + Q A+ +P VL LTA+P + G Sbjct 272 AEWDLLVVDEAHHLVWSEDAPSRE-----YQAIEQLAEHVPGVLLLTATP------EQLG 320 Query 181 AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI 240 +H +L LD + + + +P D L L + I Sbjct 321 MESHFARL-RLLDPNRFHDFAQFVEE--QKNYRPVADAVAMLLAGNKLSNDELNMLGEMI 377 Query 241 HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV 300 + P L Q + + + RV + R + Sbjct 378 GEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIK 437 Query 301 DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG---PENPKLEMLEKI 357 L + AE R + + + +P++E L Sbjct 438 LPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGY 497 Query 358 LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ 417 L S + ++ +A L L++++G++ M+ Sbjct 498 LTSH----RSQKVLVICAKAATALQLEQVLREREGIRAAVFH-------------EGMSI 540 Query 418 RDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 ++ F +D +L+ + + EG + + +V + L N + Q GR Sbjct 541 IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR 596 >sp|B7NHG5|RAPA_ECO7I RNA polymerase-associated protein RapA OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) OX=585057 GN=rapA PE=3 SV=1 Length=968 Score = 81.4 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 80/476 (17%), Positives = 152/476 (32%), Gaps = 44/476 (9%) Query 5 SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ 62 +Q + +++ G GKT A + + L + +V+++V L Q Sbjct 156 PHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVP-ETLQHQ 214 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 E R + R+ + + + L+IC+ L A S + EH+ Sbjct 215 WLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICS---LDFARRSKQRLEHLCE 271 Query 123 TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG 180 + L+VVDE HH +D + Q A+ +P VL LTA+P + G Sbjct 272 AEWDLLVVDEAHHLVWSEDAPSRE-----YQAIEQLAEHVPGVLLLTATP------EQLG 320 Query 181 AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI 240 +H +L LD + + + +P D L L + I Sbjct 321 MESHFARL-RLLDPNRFHDFAQFVEE--QKNYRPVADAVAMLLAGNKLSNDELNMLGEMI 377 Query 241 HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV 300 + P L Q + + + RV + R + Sbjct 378 GEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIK 437 Query 301 DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG---PENPKLEMLEKI 357 L + AE R + + + +P++E L Sbjct 438 LPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGY 497 Query 358 LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ 417 L S + ++ +A L L++++G++ M+ Sbjct 498 LTSH----RSQKVLVICAKAATALQLEQVLREREGIRAAVFH-------------EGMSI 540 Query 418 RDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 ++ F +D +L+ + + EG + + +V + L N + Q GR Sbjct 541 IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR 596 >sp|P60241|RAPA_ECO57 RNA polymerase-associated protein RapA OS=Escherichia coli O157:H7 OX=83334 GN=rapA PE=3 SV=2 Length=968 Score = 81.4 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 80/476 (17%), Positives = 152/476 (32%), Gaps = 44/476 (9%) Query 5 SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ 62 +Q + +++ G GKT A + + L + +V+++V L Q Sbjct 156 PHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVP-ETLQHQ 214 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 E R + R+ + + + L+IC+ L A S + EH+ Sbjct 215 WLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICS---LDFARRSKQRLEHLCE 271 Query 123 TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG 180 + L+VVDE HH +D + Q A+ +P VL LTA+P + G Sbjct 272 AEWDLLVVDEAHHLVWSEDAPSRE-----YQAIEQLAEHVPGVLLLTATP------EQLG 320 Query 181 AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI 240 +H +L LD + + + +P D L L + I Sbjct 321 MESHFARL-RLLDPNRFHDFAQFVEE--QKNYRPVADAVAMLLAGNKLSNDELNMLGEMI 377 Query 241 HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV 300 + P L Q + + + RV + R + Sbjct 378 GEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIK 437 Query 301 DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG---PENPKLEMLEKI 357 L + AE R + + + +P++E L Sbjct 438 LPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGY 497 Query 358 LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ 417 L S + ++ +A L L++++G++ M+ Sbjct 498 LTSH----RSQKVLVICAKAATALQLEQVLREREGIRAAVFH-------------EGMSI 540 Query 418 RDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 ++ F +D +L+ + + EG + + +V + L N + Q GR Sbjct 541 IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR 596 >sp|B7L4I0|RAPA_ECO55 RNA polymerase-associated protein RapA OS=Escherichia coli (strain 55989 / EAEC) OX=585055 GN=rapA PE=3 SV=1 Length=968 Score = 81.4 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 80/476 (17%), Positives = 152/476 (32%), Gaps = 44/476 (9%) Query 5 SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ 62 +Q + +++ G GKT A + + L + +V+++V L Q Sbjct 156 PHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVP-ETLQHQ 214 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 E R + R+ + + + L+IC+ L A S + EH+ Sbjct 215 WLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICS---LDFARRSKQRLEHLCE 271 Query 123 TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG 180 + L+VVDE HH +D + Q A+ +P VL LTA+P + G Sbjct 272 AEWDLLVVDEAHHLVWSEDAPSRE-----YQAIEQLAEHVPGVLLLTATP------EQLG 320 Query 181 AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI 240 +H +L LD + + + +P D L L + I Sbjct 321 MESHFARL-RLLDPNRFHDFAQFVEE--QKNYRPVADAVAMLLAGNKLSNDELNMLGEMI 377 Query 241 HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV 300 + P L Q + + + RV + R + Sbjct 378 GEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIK 437 Query 301 DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG---PENPKLEMLEKI 357 L + AE R + + + +P++E L Sbjct 438 LPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGY 497 Query 358 LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ 417 L S + ++ +A L L++++G++ M+ Sbjct 498 LTSH----RSQKVLVICAKAATALQLEQVLREREGIRAAVFH-------------EGMSI 540 Query 418 RDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 ++ F +D +L+ + + EG + + +V + L N + Q GR Sbjct 541 IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR 596 >sp|B7MAI2|RAPA_ECO45 RNA polymerase-associated protein RapA OS=Escherichia coli O45:K1 (strain S88 / ExPEC) OX=585035 GN=rapA PE=3 SV=1 Length=968 Score = 81.4 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 80/476 (17%), Positives = 152/476 (32%), Gaps = 44/476 (9%) Query 5 SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ 62 +Q + +++ G GKT A + + L + +V+++V L Q Sbjct 156 PHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVP-ETLQHQ 214 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 E R + R+ + + + L+IC+ L A S + EH+ Sbjct 215 WLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICS---LDFARRSKQRLEHLCE 271 Query 123 TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG 180 + L+VVDE HH +D + Q A+ +P VL LTA+P + G Sbjct 272 AEWDLLVVDEAHHLVWSEDAPSRE-----YQAIEQLAEHVPGVLLLTATP------EQLG 320 Query 181 AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI 240 +H +L LD + + + +P D L L + I Sbjct 321 MESHFARL-RLLDPNRFHDFAQFVEE--QKNYRPVADAVAMLLAGNKLSNDELNMLGEMI 377 Query 241 HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV 300 + P L Q + + + RV + R + Sbjct 378 GEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIK 437 Query 301 DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG---PENPKLEMLEKI 357 L + AE R + + + +P++E L Sbjct 438 LPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGY 497 Query 358 LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ 417 L S + ++ +A L L++++G++ M+ Sbjct 498 LTSH----RSQKVLVICAKAATALQLEQVLREREGIRAAVFH-------------EGMSI 540 Query 418 RDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 ++ F +D +L+ + + EG + + +V + L N + Q GR Sbjct 541 IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR 596 >sp|B7UIA5|RAPA_ECO27 RNA polymerase-associated protein RapA OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) OX=574521 GN=rapA PE=3 SV=1 Length=968 Score = 81.4 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 80/476 (17%), Positives = 152/476 (32%), Gaps = 44/476 (9%) Query 5 SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ 62 +Q + +++ G GKT A + + L + +V+++V L Q Sbjct 156 PHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVP-ETLQHQ 214 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 E R + R+ + + + L+IC+ L A S + EH+ Sbjct 215 WLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICS---LDFARRSKQRLEHLCE 271 Query 123 TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG 180 + L+VVDE HH +D + Q A+ +P VL LTA+P + G Sbjct 272 AEWDLLVVDEAHHLVWSEDAPSRE-----YQAIEQLAEHVPGVLLLTATP------EQLG 320 Query 181 AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI 240 +H +L LD + + + +P D L L + I Sbjct 321 MESHFARL-RLLDPNRFHDFAQFVEE--QKNYRPVADAVAMLLAGNKLSNDELNMLGEMI 377 Query 241 HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV 300 + P L Q + + + RV + R + Sbjct 378 GEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIK 437 Query 301 DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG---PENPKLEMLEKI 357 L + AE R + + + +P++E L Sbjct 438 LPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGY 497 Query 358 LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ 417 L S + ++ +A L L++++G++ M+ Sbjct 498 LTSH----RSQKVLVICAKAATALQLEQVLREREGIRAAVFH-------------EGMSI 540 Query 418 RDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 ++ F +D +L+ + + EG + + +V + L N + Q GR Sbjct 541 IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR 596 >sp|Q2UMY7|MAK5_ASPOR ATP-dependent RNA helicase mak5 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=mak5 PE=3 SV=1 Length=757 Score = 81.0 bits (198), Expect = 1e-14, Method: Composition-based stats. Identities = 33/143 (23%), Positives = 52/143 (36%), Gaps = 22/143 (15%) Query 350 KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 K L +L R ++FT + + L LQ Q Sbjct 473 KDLFLYTLLLYH----PKHRTLVFTNSISAVRRLTQLLQTLQLPAL-------------- 514 Query 410 SQSTHMTQRDQQEVIQKFQDGTLN---LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV 466 + + M Q+ + +++F + + +LVAT VA GLDI + VV Y + V Sbjct 515 ALHSSMAQKARLRSVERFSSPSSDPSSILVATDVAARGLDIKGIDFVVHYHAPRTADAYV 574 Query 467 QARGR-ARADQSVYAFVATEGSR 488 GR ARA S + + Sbjct 575 HRSGRTARAGASGKSVIICSPDE 597 Score = 46.7 bits (109), Expect = 7e-04, Method: Composition-based stats. Identities = 27/139 (19%), Positives = 48/139 (35%), Gaps = 21/139 (15%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAK-------------VVVLVNRVHLVT 61 L+G+++I TG+GKT A + +K +VL L Sbjct 219 LDGRDVIGKASTGSGKTLAFGIPILEYYLEKLRSKTQKDSEKTETTPIALVLSPTRELAH 278 Query 62 Q---HGEEFRRMLDGRW-TVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE 117 Q H E G + L+G + + + D++I T + L+S Sbjct 279 QLAKHIGEVVSHAPGVNARIALLTGGLSLQKQ-QRVLTNADIVIGTPGRVWEVLSSG--H 335 Query 118 EHVE-LTVFSLIVVDECHH 135 + + +V+DE Sbjct 336 GLIRKMQAIKFLVIDEADR 354 >sp|A1A7A6|RAPA_ECOK1 RNA polymerase-associated protein RapA OS=Escherichia coli O1:K1 / APEC OX=405955 GN=rapA PE=3 SV=1 Length=968 Score = 81.4 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 80/476 (17%), Positives = 152/476 (32%), Gaps = 44/476 (9%) Query 5 SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ 62 +Q + +++ G GKT A + + L + +V+++V L Q Sbjct 156 PHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVP-ETLQHQ 214 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 E R + R+ + + + L+IC+ L A S + EH+ Sbjct 215 WLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICS---LDFARRSKQRLEHLCE 271 Query 123 TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG 180 + L+VVDE HH +D + Q A+ +P VL LTA+P + G Sbjct 272 AEWDLLVVDEAHHLVWSEDAPSRE-----YQAIEQLAEHVPGVLLLTATP------EQLG 320 Query 181 AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI 240 +H +L LD + + + +P D L L + I Sbjct 321 MESHFARL-RLLDPNRFHDFAQFVEE--QKNYRPVADAVAMLLAGNKLSNDELNMLGEMI 377 Query 241 HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV 300 + P L Q + + + RV + R + Sbjct 378 GEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIK 437 Query 301 DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG---PENPKLEMLEKI 357 L + AE R + + + +P++E L Sbjct 438 LPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGY 497 Query 358 LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ 417 L S + ++ +A L L++++G++ M+ Sbjct 498 LTSH----RSQKVLVICAKAATALQLEQVLREREGIRAAVFH-------------EGMSI 540 Query 418 RDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 ++ F +D +L+ + + EG + + +V + L N + Q GR Sbjct 541 IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR 596 >sp|B7M0F4|RAPA_ECO8A RNA polymerase-associated protein RapA OS=Escherichia coli O8 (strain IAI1) OX=585034 GN=rapA PE=3 SV=1 Length=968 Score = 81.4 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 80/476 (17%), Positives = 152/476 (32%), Gaps = 44/476 (9%) Query 5 SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ 62 +Q + +++ G GKT A + + L + +V+++V L Q Sbjct 156 PHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVP-ETLQHQ 214 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 E R + R+ + + + L+IC+ L A S + EH+ Sbjct 215 WLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICS---LDFARRSKQRLEHLCE 271 Query 123 TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG 180 + L+VVDE HH +D + Q A+ +P VL LTA+P + G Sbjct 272 AEWDLLVVDEAHHLVWSEDAPSRE-----YQAIEQLAEHVPGVLLLTATP------EQLG 320 Query 181 AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI 240 +H +L LD + + + +P D L L + I Sbjct 321 MESHFARL-RLLDPNRFHDFAQFVEE--QKNYRPVADAVAMLLAGNKLSNDELNMLGEMI 377 Query 241 HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV 300 + P L Q + + + RV + R + Sbjct 378 GEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIK 437 Query 301 DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG---PENPKLEMLEKI 357 L + AE R + + + +P++E L Sbjct 438 LPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGY 497 Query 358 LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ 417 L S + ++ +A L L++++G++ M+ Sbjct 498 LTSH----RSQKVLVICAKAATALQLEQVLREREGIRAAVFH-------------EGMSI 540 Query 418 RDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 ++ F +D +L+ + + EG + + +V + L N + Q GR Sbjct 541 IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR 596 >sp|A7ZHF0|RAPA_ECO24 RNA polymerase-associated protein RapA OS=Escherichia coli O139:H28 (strain E24377A / ETEC) OX=331111 GN=rapA PE=3 SV=1 Length=968 Score = 81.4 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 80/476 (17%), Positives = 152/476 (32%), Gaps = 44/476 (9%) Query 5 SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ 62 +Q + +++ G GKT A + + L + +V+++V L Q Sbjct 156 PHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVP-ETLQHQ 214 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 E R + R+ + + + L+IC+ L A S + EH+ Sbjct 215 WLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICS---LDFARRSKQRLEHLCE 271 Query 123 TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG 180 + L+VVDE HH +D + Q A+ +P VL LTA+P + G Sbjct 272 AEWDLLVVDEAHHLVWSEDAPSRE-----YQAIEQLAEHVPGVLLLTATP------EQLG 320 Query 181 AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI 240 +H +L LD + + + +P D L L + I Sbjct 321 MESHFARL-RLLDPNRFHDFAQFVEE--QKNYRPVADAVAMLLAGNKLSNDELNMLGEMI 377 Query 241 HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV 300 + P L Q + + + RV + R + Sbjct 378 GEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIK 437 Query 301 DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG---PENPKLEMLEKI 357 L + AE R + + + +P++E L Sbjct 438 LPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGY 497 Query 358 LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ 417 L S + ++ +A L L++++G++ M+ Sbjct 498 LTSH----RSQKVLVICAKAATALQLEQVLREREGIRAAVFH-------------EGMSI 540 Query 418 RDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 ++ F +D +L+ + + EG + + +V + L N + Q GR Sbjct 541 IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR 596 >sp|A3LNR6|HAS1_PICST ATP-dependent RNA helicase HAS1 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) OX=322104 GN=HAS1 PE=3 SV=2 Length=567 Score = 80.6 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 42/260 (16%), Positives = 81/260 (31%), Gaps = 44/260 (17%) Query 253 FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHR 312 G Q+ KL++ L R+ HL+ + + +D + + Sbjct 210 IGGANRRQEAEKLAKGVNLLIATPGRLLD-HLQNTQGFVFKNLKALVIDEADRILEIGFE 268 Query 313 EHVTKT-QILCAERRLLALFDD----RKNELAHLA-THGPENPKL--------------- 351 E + + +IL E R LF + +LA ++ GP + Sbjct 269 EEMKQIIKILPKEERQSMLFSATQTTKVEDLARISLRPGPLYINVVPETAASTADGLEQG 328 Query 352 ------EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 + +L + + I+F + S L +D+ L G Sbjct 329 YVVCDSDKRFLLLFSFLKKYSKKKIIVFLSSCNSVKYFGELL------NYIDLPVLDLHG 382 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465 Q+ + +F + LV T VA GLDIP + ++++ + Sbjct 383 --------KQKQQKRTNTFFEFCNAKQGTLVCTDVAARGLDIPAVDWIIQFDPPDDPRDY 434 Query 466 VQARGRARAD--QSVYAFVA 483 + GR + + Sbjct 435 IHRVGRTARGSNGKGKSLMF 454 Score = 53.3 bits (126), Expect = 6e-06, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 52/135 (39%), Gaps = 9/135 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA----AAYVAKRH-LETVDGAKVVVLVNRVHLVT 61 Q + I P L GK+++ TG+GKT A A + + +G V+V+ L Sbjct 130 QAKTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIELLYSLKFKPRNGTGVIVVSPTRELAL 189 Query 62 QHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 Q R ++ + G R LA+ +LLI T L L + + Sbjct 190 QIFGVARELMAHHTQTFGIVIGGANRRQEAEKLAKGVNLLIATPGRLLDHLQNTQGFVFK 249 Query 121 ELTVFSLIVVDECHH 135 L +V+DE Sbjct 250 NLKA---LVIDEADR 261 >sp|A2QS00|DBP4_ASPNC ATP-dependent RNA helicase dbp4 OS=Aspergillus niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) OX=425011 GN=dbp4 PE=3 SV=1 Length=802 Score = 81.0 bits (198), Expect = 2e-14, Method: Composition-based stats. Identities = 37/197 (19%), Positives = 69/197 (35%), Gaps = 23/197 (12%) Query 332 DDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQ 391 ++L P KL++L ++ + I+F + + + + Q Sbjct 260 SATPSKLQQHYVVTPLPQKLDVLWSFIRSNLK----SKTIVFLSSGKQVRFVYESFRHMQ 315 Query 392 GLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN 451 G Q + ++ KF +L AT VA GLD P + Sbjct 316 P------------GVPLMHLHGRQKQGGRLDITTKFSSAQHAVLFATDVAARGLDFPAVD 363 Query 452 VVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAV 510 V++ + + + GR AR ++ A + + S E L+ L ++ V Sbjct 364 WVIQLDCPEDADTYIHRVGRTARYERDGRAVLFLDPSEE------KGMLKRLEQKKVQVE 417 Query 511 QKMDQAEYQAKIRDLQQ 527 + +A Q I+D Q Sbjct 418 RINVKANKQQSIKDQLQ 434 Score = 57.5 bits (137), Expect = 4e-07, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 48/135 (36%), Gaps = 10/135 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAY--VAKRHLETV----DGAKVVVLVNRVHLV 60 Q I AL+G++I+ TG+GKT A + + DG +VL L Sbjct 74 QSRAISHALKGRDILGAAKTGSGKTL-AFLIPILENLYRKQWSEHDGLGALVLSPTRELA 132 Query 61 TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 Q E R++ L ++L+CT + L ++ Sbjct 133 IQIFEVLRKVGRYHTFSAGLVIGGKSLREEQERLGRMNILVCTPGRMLQHL---DQTSFF 189 Query 121 ELTVFSLIVVDECHH 135 E ++V+DE Sbjct 190 ETHNLQMLVLDEADR 204 >sp|Q8JHJ2|DDX55_DANRE ATP-dependent RNA helicase DDX55 OS=Danio rerio OX=7955 GN=ddx55 PE=2 SV=2 Length=593 Score = 80.6 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 28/157 (18%), Positives = 54/157 (34%), Gaps = 18/157 (11%) Query 328 LALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWL 387 + +L++ T K L L++ + ++F T + Sbjct 232 ASSVQKTPAKLSNYYTMCRAEEKFNTLVAFLRQH----KHEKQLVFFSTCACVE----YF 283 Query 388 QQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDI 447 + + ++ + G + + ++ F+ +LV T V G+DI Sbjct 284 GKALEVLVKNVSIHCIHGKM---------KHKRNKIFADFRALKSGILVCTDVMARGIDI 334 Query 448 PHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVA 483 P N V++Y ++ S V GR AR A V Sbjct 335 PEVNWVLQYDPPSSASSFVHRCGRTARIGNQGNALVF 371 Score = 44.0 bits (102), Expect = 0.004, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 42/121 (35%), Gaps = 11/121 (9%) Query 26 TGAGKTRA----AAYVAKRHLETVDGAKV--VVLVNRVHLVTQHGEEFRRML---DGRWT 76 TG+GKT A A + + E + +V +++ L Q E R L Sbjct 55 TGSGKTLAFVIPALEILLKREEKLKKMQVGALIITPTRELAMQISEVMGRFLQGFPQFTQ 114 Query 77 VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE--EEHVELTVFSLIVVDECH 134 + + G + +++I T L+ + + + ++V+DE Sbjct 115 ILLIGGSNPIEDVEKLKTQGANIIIATPGRLEDMFRRKADGLDLATAVKSLDVLVLDEAD 174 Query 135 H 135 Sbjct 175 R 175 >sp|Q1E9T9|DBP7_COCIM ATP-dependent RNA helicase DBP7 OS=Coccidioides immitis (strain RS) OX=246410 GN=DBP7 PE=3 SV=1 Length=769 Score = 81.0 bits (198), Expect = 2e-14, Method: Composition-based stats. Identities = 30/158 (19%), Positives = 56/158 (35%), Gaps = 26/158 (16%) Query 351 LEMLEKILQRQFSSSNS-PRGIIFTR-------------TRQSAHSLLLWLQQQQGLQTV 396 L L +L+R F+ S + IIF R+S+ L + + Sbjct 428 LVTLTALLKRTFARKGSVMKAIIFVSCADSVDFHFEVFTRRESSEELPDADDENAP-SSS 486 Query 397 DIRAQLLIGAGNS---------SQSTHMTQRDQQEVIQKF-QDGTLNLLVATSVAEEGLD 446 ++ + + S + Q + + F + ++L+ T VA GLD Sbjct 487 NVHGSIATASAFSNPSNNVILHKLHGSLPQHVRTATLSAFAKQKDASVLICTDVAARGLD 546 Query 447 IPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVA 483 +P+ + V+ Y + GR AR + A + Sbjct 547 LPNVDFVIEYDPAFCSDDHLHRIGRTARLGRDGRALIF 584 Score = 44.0 bits (102), Expect = 0.005, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 43/131 (33%), Gaps = 23/131 (18%) Query 22 IWLPTGAGKTRAAAY----VAKRHLETVDGAK--------------VVVLVNRVHLVTQH 63 + TG+GKT A R G K +VL L Q Sbjct 199 VQAQTGSGKTLAYLLPIVERLMRISSHNKGKKDSEGNTVHRDSGLFAIVLAPTRELCKQI 258 Query 64 GEEFRRML--DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVE 121 +L T+ G ++ L + ++L+ T L L + + ++ Sbjct 259 SVVLDGLLRCAHWIVAGTVIGGEKKKSEKARLRKGLNILVATPGRLADHLENTK---VLD 315 Query 122 LTVFSLIVVDE 132 ++ +V+DE Sbjct 316 VSNVRWLVLDE 326 >sp|Q0IE10|UVRB_SYNS3 UvrABC system protein B OS=Synechococcus sp. (strain CC9311) OX=64471 GN=uvrB PE=3 SV=1 Length=679 Score = 81.0 bits (198), Expect = 2e-14, Method: Composition-based stats. Identities = 36/192 (19%), Positives = 78/192 (41%), Gaps = 25/192 (13%) Query 319 QILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQ 378 ++ +E ++ L L P +++ L ++ +S R ++ T T++ Sbjct 398 EMEVSEGQVAEQVIRPTGVLDPLVEVRPTTGQVDDLLGEIRD--RASKKQRVLVTTLTKR 455 Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT 438 A L +L + + +R + L + + ++ E+IQ + G ++LV Sbjct 456 MAEDLTDYLAENK------VRVRYL--------HSEIHSIERIEIIQDLRLGEYDVLVGV 501 Query 439 SVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAFVATEGSRELKRE 493 ++ EGLD+P ++V L + S++Q GRA A + E + Sbjct 502 NLLREGLDLPEVSLVAILDADKEGFLRAQRSLIQTIGRAARHVEGKALLYAE----TMTD 557 Query 494 LINEALETLMEQ 505 + +A+E + Sbjct 558 SMAKAIEETERR 569 >sp|A3CNJ9|UVRB_STRSV UvrABC system protein B OS=Streptococcus sanguinis (strain SK36) OX=388919 GN=uvrB PE=3 SV=1 Length=662 Score = 81.0 bits (198), Expect = 2e-14, Method: Composition-based stats. Identities = 36/199 (18%), Positives = 79/199 (40%), Gaps = 23/199 (12%) Query 365 SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI 424 + R I T T++ A L + ++ +G + + ++ E+I Sbjct 448 EKNERTFITTLTKKMAEDLTDYFKE--------------MGVKVKYMHSDIKTLERTEII 493 Query 425 QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVY 479 + + G ++LV ++ EG+D+P ++V L NE ++Q GRA + + Sbjct 494 RDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSEGH 553 Query 480 AFVATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDL---QQAALTKRAA 535 + + ++ ++R + A ++ A + + +IRDL +AAL + Sbjct 554 VIMYADTMTQSMQRAIDETARRRAIQMAYNEEHGIVPQTIKKEIRDLISVTKAALPDKEE 613 Query 536 QAAQRENQRQQFPVEHVQL 554 +Q+ +L Sbjct 614 TVEIESLNKQERKDMIKKL 632 >sp|Q5AF95|DBP4_CANAL ATP-dependent RNA helicase DBP4 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DBP4 PE=3 SV=1 Length=765 Score = 81.0 bits (198), Expect = 2e-14, Method: Composition-based stats. Identities = 33/178 (19%), Positives = 56/178 (31%), Gaps = 20/178 (11%) Query 331 FDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQ 390 L P + KL++L ++ + ++F + + + Sbjct 261 VSATPESLEQYYVKVPLDEKLDVLWSFIKSHLK----SKILVFFSSSKQVQYTYETFRTL 316 Query 391 QGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHC 450 Q G Q + E KF L AT + GLD P Sbjct 317 QP------------GISLMKLYGRHKQTSRLETTMKFSQAQHACLFATDIVARGLDFPAI 364 Query 451 NVVVRYGLLTNEISMVQARGR----ARADQSVYAFVATEGSRELKRELINEALETLME 504 + VV+ + + V GR R +S+ + +E LKR I++ LM Sbjct 365 DWVVQVDCPEDAATYVHRVGRSARFGRKGKSLLMLLPSEEEGMLKRLKIHKIEPKLMN 422 Score = 59.0 bits (141), Expect = 1e-07, Method: Composition-based stats. Identities = 52/363 (14%), Positives = 108/363 (30%), Gaps = 35/363 (10%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAY------VAKRHLETVDGAKVVVLVNRVHLV 60 Q + I AL+G++++ TG+GKT A + + + DG +++ L Sbjct 75 QKKTIPIALKGEDLMGTARTGSGKTL-AFLIPVIESLIRNKITEYDGLAALIVSPTRELA 133 Query 61 TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 Q E ++ L ++L+ T + L + Sbjct 134 VQIFEVLTKIGKYNTFSAGLVTGGKDVQFEKERVSRMNILVGTPGRISQHLNEAVG---M 190 Query 121 ELTVFSLIVVDECHHT------------HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTA 168 E + ++V+DE + + + L + L LT Sbjct 191 ETSNLQVLVLDEADRCLDMGFKKQIDNILGHLPTTRQTLLFSATQSESVNDLAR-LSLTN 249 Query 169 SPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDP 228 G +S + V +L+ + + P + + + + + S Sbjct 250 PNKIGVSSDQE-----VSATPESLEQYYVKVPLDEKLDVLWSFIKSHLKSKILVFFSSSK 304 Query 229 FGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYN 288 + + + + +L +G +Q +L + Q ++A + Sbjct 305 QVQYTYETFRTLQPGISLMKL---YGRH---KQTSRLETTMKFSQAQHACLFATDIVARG 358 Query 289 DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPEN 348 D V VD + HR + + LL L + + Sbjct 359 LDFPAIDWVVQVDCPEDAATYVHRVG-RSARFGRKGKSLLMLLPSEEEGMLKRLKIHKIE 417 Query 349 PKL 351 PKL Sbjct 418 PKL 420 >sp|Q4KH47|RAPA_PSEF5 RNA polymerase-associated protein RapA OS=Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5) OX=220664 GN=rapA PE=3 SV=1 Length=949 Score = 81.4 bits (199), Expect = 2e-14, Method: Composition-based stats. Identities = 80/455 (18%), Positives = 155/455 (34%), Gaps = 64/455 (14%) Query 27 GAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGP 86 G GKT A V R L + ++V++LV +L Q E RR + V + Sbjct 180 GLGKTIEAGLVIHRQLLSGRASRVLILVP-ENLQHQWLVEMRRRFNL--QVALFDEERFI 236 Query 87 RAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIM 146 + + L + E L + ++ + + L+VVDE HH + + Sbjct 237 ESDASNPFEDTQLALVALEWLVDD---EKAQDALFAAGWDLMVVDEAHHLVW---HEDQV 290 Query 147 SQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQ 206 S L Q A+ +P VL LTA+P + G +H +L LD + Sbjct 291 SPEYALVEQLAETIPGVLLLTATP------EQLGQDSHFARL-RLLDPNRFHDLAAFRAE 343 Query 207 LQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLS 266 + + P + +++LMD+ E + F E + ++ Sbjct 344 SENY----------------RPVAEAVQELMDKGRLSPEAHKTIHGFLGNEGEALLAAVN 387 Query 267 EAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERR 326 + + A R+ L R+ ++ R AA+Q F R+ + + C + Sbjct 388 DGDSEA---SARLVRELLDRHGTGRVLFRNTR-----AAVQGFPERK-LHAYPLPCPDEY 438 Query 327 LLALFDDRKNELAHLATHGPENP--------KLEMLEKILQRQFSSSNSPRGIIFTRTRQ 378 L + ++ + K + + L Q + ++ + Sbjct 439 LELPLGEHAELYPEVSFQAQPDVSDDEQRWWKFDPRVEWLIDQLKMLKRTKVLVICAHAE 498 Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTL--NLLV 436 +A L L+ + G+ M ++ F D +L+ Sbjct 499 TAMDLEDALRVRSGIPATVFH-------------EGMNILERDRAAAYFADEEFGAQVLI 545 Query 437 ATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 + + EG + + +V + L ++ + Q GR Sbjct 546 CSEIGSEGRNFQFAHHLVLFDLPSHPDLLEQRIGR 580 >sp|Q3IKF4|UVRB_PSET1 UvrABC system protein B OS=Pseudoalteromonas translucida (strain TAC 125) OX=326442 GN=uvrB PE=3 SV=1 Length=664 Score = 81.0 bits (198), Expect = 2e-14, Method: Composition-based stats. Identities = 33/203 (16%), Positives = 79/203 (39%), Gaps = 22/203 (11%) Query 354 LEKILQRQFSS-SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQS 412 ++ +L + S R ++ T T++ + L +L + +++ + L Sbjct 432 VDDLLSEIYKSVEKGERVLVTTLTKRMSEDLTDYLSEH------NVKVRYL--------H 477 Query 413 THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQ 467 + + ++ E+I+ + G ++LV ++ EGLD+P +V L + S++Q Sbjct 478 SDIDTVERVEIIRDLRAGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSARSIIQ 537 Query 468 ARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQ 526 GR AR + ++ + + + A ++ A ++ KI D Sbjct 538 TVGRAARHLEGRAILYGDRITKSMAKAMDETARRREIQHAYNIEHGIEPHSLAKKILDSM 597 Query 527 QAALTKRAAQAAQRENQRQQFPV 549 + + R +++ V Sbjct 598 DVG-EEAGPKDNLRLIRKESKKV 619 >sp|Q2NL08|DDX55_BOVIN ATP-dependent RNA helicase DDX55 OS=Bos taurus OX=9913 GN=DDX55 PE=2 SV=1 Length=601 Score = 80.6 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 30/169 (18%), Positives = 54/169 (32%), Gaps = 20/169 (12%) Query 332 DDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQ 391 + L + + K L L+ + ++F T L+ Sbjct 236 QKTPSRLENHYMVCKADEKFNQLVHFLRNH----KQEKHLVFFSTCACVEYYGKALE--- 288 Query 392 GLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN 451 L+ G M + + ++ +F+ +LV T V G+DIP N Sbjct 289 ---------TLVKGVKIMCIHGKMKYK-RNKIFMEFRKLQSGILVCTDVMARGIDIPEVN 338 Query 452 VVVRYGLLTNEISMVQARGRA---RADQSVYAFVATEGSRELKRELINE 497 V++Y +N + V GR S F+ + IN+ Sbjct 339 WVLQYDPPSNASAFVHRCGRTARIGHGGSALVFLLPMEESYISFLAINQ 387 Score = 47.5 bits (111), Expect = 4e-04, Method: Composition-based stats. Identities = 21/132 (16%), Positives = 45/132 (34%), Gaps = 11/132 (8%) Query 15 LEGKNIIIWLPTGAGKTRAAAYVAKRHL----ETVDGAKV--VVLVNRVHLVTQHGEEFR 68 ++ K++ TG+GKT A + L E ++V +++ L Q E Sbjct 44 MKNKDVAAEAVTGSGKTLAFVIPIEEILLRREEKFKKSQVGAIIITPTRELAVQIEEVLS 103 Query 69 RMLD--GRWTVTTLSGDMGPRAGFGHLAR-CHDLLICTAELLQMALTSPEEEEHV--ELT 123 +++ G P ++++ T L+ E + + Sbjct 104 HFTKPFPQFSQILWIGGRNPGEDVARFKELGGNIIVATPGRLEDMFRRKAEGLDLASCVR 163 Query 124 VFSLIVVDECHH 135 ++V+DE Sbjct 164 SLEVLVLDEADR 175 >sp|A5DID7|HAS1_PICGU ATP-dependent RNA helicase HAS1 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=HAS1 PE=3 SV=2 Length=569 Score = 80.6 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 36/247 (15%), Positives = 86/247 (35%), Gaps = 18/247 (7%) Query 253 FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHR 312 G Q+ KL + L R+ HL+ + + +D + + Sbjct 212 IGGANRRQEADKLMKGVNLLIATPGRLLD-HLQNTKGFIFKNLKALVIDEADRILEIGFE 270 Query 313 EHVTKT-QILCAERRLLALFDD----RKNELAHLATH-GPEN------PKLEMLEKILQR 360 + + + ++L ++ R LF + +LA ++ GP ++ + + Q Sbjct 271 DEMKQIIKVLPSDERQSMLFSATQTTKVEDLARISLRAGPLYINVVPETEVSTADGLEQG 330 Query 361 QFSSSNSPR-GIIFT-RTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQR 418 + + R ++F+ R ++++L ++ I Q+ Sbjct 331 YVTCDSDMRFLLLFSFLRRNIKKKIIVFLSSCNCVKYFGELLN-YIDLPVLDLHGKQKQQ 389 Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA--RADQ 476 + +F + +L+ T VA GLDIP + ++++ + + GR Sbjct 390 KRTNTFFEFCNAKQGILICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTGG 449 Query 477 SVYAFVA 483 + + Sbjct 450 KGKSLMF 456 Score = 53.3 bits (126), Expect = 5e-06, Method: Composition-based stats. Identities = 31/135 (23%), Positives = 51/135 (38%), Gaps = 9/135 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA----AAYVAKRH-LETVDGAKVVVLVNRVHLVT 61 Q + I P L G++++ TG+GKT A A + + +G V+V+ L Sbjct 132 QEKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEMLYSLKFKPRNGTGVIVVSPTRELAL 191 Query 62 QHGEEFRRMLDGRWTVTTLS-GDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 Q R ++ + G R L + +LLI T L L + + Sbjct 192 QIFGVARDLMAHHSQTLGIVIGGANRRQEADKLMKGVNLLIATPGRLLDHLQNTKGFIFK 251 Query 121 ELTVFSLIVVDECHH 135 L +V+DE Sbjct 252 NLKA---LVIDEADR 263 >sp|Q2GMX1|HAS1_CHAGB ATP-dependent RNA helicase HAS1 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=HAS1 PE=3 SV=1 Length=586 Score = 80.6 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 39/227 (17%), Positives = 72/227 (32%), Gaps = 13/227 (6%) Query 264 KLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCA 323 KL + L R+ HLRR + ++ +A L+ + E +IL Sbjct 230 KLGKGVNLLIATPGRLLD-HLRRGSFVFKNLKSLIIDEADRILEVGFEDEMRHIVKILPK 288 Query 324 ERRLLALFDDRKN-----------ELAHLATHGPENPKLEMLEKILQRQFSSSNSPR-GI 371 E R LF + L + E + +E + Q R + Sbjct 289 ENRQTMLFSATQTTKVEDLARISLRPGPLYINVDEEKQFSTVEGLDQGYVIVDADKRFLL 348 Query 372 IFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGT 431 +F+ ++ A ++ I Q+ + +F + Sbjct 349 LFSFLKKMAKKKIIVFLSSCNSVKYYSELLQYIDLQVLDLHGKQKQQKRTNTFFEFCNAK 408 Query 432 LNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSV 478 L+ T VA GLDIP + +V++ + + GR + Sbjct 409 QGTLICTDVAARGLDIPQVDWIVQFDPPDDPRDYIHRVGRTARGNNT 455 Score = 56.0 bits (133), Expect = 1e-06, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 42/127 (33%), Gaps = 10/127 (8%) Query 15 LEGKNIIIWLPTGAGKT---RAAAYVAKRHLETVD--GAKVVVLVNRVHLVTQHGEEFRR 69 L GK+++ TG+GKT A L G V+V+ L Q R Sbjct 147 LAGKDVLGAAKTGSGKTLAFLIPAIEMLNSLRFKPRNGTGVIVVTPTRELALQIFGVARE 206 Query 70 MLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLI 128 ++ + G RA L + +LLI T L L + Sbjct 207 LMKNHSQTYGVVIGGANIRAEEDKLGKGVNLLIATPGRLLDHL----RRGSFVFKNLKSL 262 Query 129 VVDECHH 135 ++DE Sbjct 263 IIDEADR 269 >sp|A8AX17|UVRB_STRGC UvrABC system protein B OS=Streptococcus gordonii (strain Challis / ATCC 35105 / BCRC 15272 / CH1 / DL1 / V288) OX=467705 GN=uvrB PE=3 SV=1 Length=662 Score = 80.6 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 37/208 (18%), Positives = 82/208 (39%), Gaps = 22/208 (11%) Query 365 SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI 424 + R I T T++ A L + ++ +G + + ++ E+I Sbjct 448 EKNERTFITTLTKKMAEDLTDYFKE--------------MGVKVKYMHSDIKTLERTEII 493 Query 425 QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVY 479 + + G ++LV ++ EG+D+P ++V L NE ++Q GRA + + Sbjct 494 RDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSEGH 553 Query 480 AFVATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTK--RAAQ 536 + + ++ ++R + A ++ A + + +IRDL T + Sbjct 554 VIMYADTMTQSMQRAIDETARRRAIQMAYNEEHGIVPQTIKKEIRDLISVTKTALPDKEE 613 Query 537 AAQRENQRQQFPVEHVQLLCINCMVAVG 564 + E+ +Q + ++ L A G Sbjct 614 TVEIESLNKQERKDMIKKLEGQMQEAAG 641 >sp|Q8TFL3|DBP7_CANGA ATP-dependent RNA helicase DBP7 OS=Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DBP7 PE=3 SV=1 Length=715 Score = 80.6 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 7/95 (7%) Query 396 VDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF------QDGTLNLLVATSVAEEGLDIPH 449 I+ + L G ++Q+ + ++ F G +L T VA GLD+P Sbjct 453 PSIKDEELPGIICYKLHGSLSQQMRTMTLKHFATDSEQTKGKHLILFCTDVASRGLDLPD 512 Query 450 CNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVA 483 + V+ + + GR ARA +S A + Sbjct 513 VSTVIEFDPPFAVEDHLHRIGRTARAGRSGEALLF 547 Score = 42.9 bits (99), Expect = 0.010, Method: Composition-based stats. Identities = 18/116 (16%), Positives = 41/116 (35%), Gaps = 9/116 (8%) Query 26 TGAGKT-------RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTVT 78 TG+GKT +A H++ G +++ L +Q + + + Sbjct 175 TGSGKTLAYLLPIFSAILGMGDHIDRKSGCFALIIAPTRELASQIYHVTTMLANCCHYLV 234 Query 79 --TLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDE 132 L G ++ L + + +I T + + + + + +V+DE Sbjct 235 PCLLIGGERKKSEKARLRKGCNFIIGTPGRILDHFQNTKVIKEQMQSSLRYVVLDE 290 >sp|Q6YQE1|UVRB_ONYPE UvrABC system protein B OS=Onion yellows phytoplasma (strain OY-M) OX=262768 GN=uvrB PE=3 SV=2 Length=670 Score = 80.6 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 62/416 (15%), Positives = 135/416 (32%), Gaps = 61/416 (15%) Query 171 GTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHS-----------QQPCKQYN 219 +L INH + L I ++ E K+ Sbjct 262 IKRIRQELKEQINHFEKTNQLLAAQKIKMRTLHDLEMLEQIGNCNGVENYSRHLALKEKG 321 Query 220 LCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRV 279 D FG+ ++D+ H + +P++ + + + G + Sbjct 322 EAPSTLIDFFGNEFLTIIDESH--VTIPQIKGMYFGDFSRKTNL------VNFGFRLPSA 373 Query 280 YALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELA 339 ++++ + V L+A Y +I E+ + F L Sbjct 374 LDNRPLKFHE---FQAKMNKVIYLSATPGNYELTK----KIPIVEQIIRPTF-----VLD 421 Query 340 HLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIR 399 P + +++ L ++ Q + N+ R +I T T + L +L+ + I+ Sbjct 422 PEIEIRPTHNQMDDLYFEIKHQ--TKNNQRILITTLTINMSEDLTAYLKN------LCIK 473 Query 400 AQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-- 457 L + + + E+++ + G + LV ++ EGLD+P +V Sbjct 474 VAYL--------HSEIKSLQRLEILKDLRLGKYDCLVGVNLLREGLDLPEVALVAILDAD 525 Query 458 ---LLTNEISMVQARGRARADQSVYAFVATE---------GSRELKRELINEALETLMEQ 505 L NE S++Q GRA + + A + + +R I + M+ Sbjct 526 KQGFLRNERSLIQTIGRAARNITGKAIMYADCISPAMQIAIEETYRRRKIQQQYNETMKV 585 Query 506 AVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQLLCINCMV 561 A+ K K ++ Q + ++ ++ ++ + M+ Sbjct 586 TPTALNKTILETISIKQKESAQNENENGKVKGQKKLQTHTNITAKNKEIKRLQKMM 641 >sp|Q6GIN3|UVRB_STAAR UvrABC system protein B OS=Staphylococcus aureus (strain MRSA252) OX=282458 GN=uvrB PE=3 SV=1 Length=663 Score = 80.6 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 39/224 (17%), Positives = 87/224 (39%), Gaps = 31/224 (14%) Query 345 GPENPKLEM------LEKILQR-QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD 397 G +PK+E+ ++ +L Q + R ++ T T++ + L ++++ Sbjct 420 GLLDPKIEVRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEA------- 472 Query 398 IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG 457 G + + + ++ E+I+ + GT +++V ++ EG+DIP ++VV Sbjct 473 -------GIKVNYLHSEIKTLERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILD 525 Query 458 -----LLTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEA---LETLMEQAVAA 509 L + S++Q GRA + + + + + I+E E M+ Sbjct 526 ADKEGFLRSNRSLIQTIGRAARNDKGEVIMYADKMTDSMKYAIDETQRRREIQMKH--NE 583 Query 510 VQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQ 553 + KI DL A + + ++ + Q Sbjct 584 KHGITPKTINKKIHDLISATVENDENNDKAQTVIPKKMTKKERQ 627 >sp|P67425|UVRB_STAAN UvrABC system protein B OS=Staphylococcus aureus (strain N315) OX=158879 GN=uvrB PE=1 SV=1 Length=663 Score = 80.6 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 39/224 (17%), Positives = 87/224 (39%), Gaps = 31/224 (14%) Query 345 GPENPKLEM------LEKILQR-QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD 397 G +PK+E+ ++ +L Q + R ++ T T++ + L ++++ Sbjct 420 GLLDPKIEVRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEA------- 472 Query 398 IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG 457 G + + + ++ E+I+ + GT +++V ++ EG+DIP ++VV Sbjct 473 -------GIKVNYLHSEIKTLERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILD 525 Query 458 -----LLTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEA---LETLMEQAVAA 509 L + S++Q GRA + + + + + I+E E M+ Sbjct 526 ADKEGFLRSNRSLIQTIGRAARNDKGEVIMYADKMTDSMKYAIDETQRRREIQMKH--NE 583 Query 510 VQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQ 553 + KI DL A + + ++ + Q Sbjct 584 KHGITPKTINKKIHDLISATVENDENNDKAQTVIPKKMTKKERQ 627 >sp|P67424|UVRB_STAAM UvrABC system protein B OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) OX=158878 GN=uvrB PE=3 SV=1 Length=663 Score = 80.6 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 39/224 (17%), Positives = 87/224 (39%), Gaps = 31/224 (14%) Query 345 GPENPKLEM------LEKILQR-QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD 397 G +PK+E+ ++ +L Q + R ++ T T++ + L ++++ Sbjct 420 GLLDPKIEVRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEA------- 472 Query 398 IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG 457 G + + + ++ E+I+ + GT +++V ++ EG+DIP ++VV Sbjct 473 -------GIKVNYLHSEIKTLERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILD 525 Query 458 -----LLTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEA---LETLMEQAVAA 509 L + S++Q GRA + + + + + I+E E M+ Sbjct 526 ADKEGFLRSNRSLIQTIGRAARNDKGEVIMYADKMTDSMKYAIDETQRRREIQMKH--NE 583 Query 510 VQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQ 553 + KI DL A + + ++ + Q Sbjct 584 KHGITPKTINKKIHDLISATVENDENNDKAQTVIPKKMTKKERQ 627 >sp|Q5HHR0|UVRB_STAAC UvrABC system protein B OS=Staphylococcus aureus (strain COL) OX=93062 GN=uvrB PE=3 SV=1 Length=663 Score = 80.6 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 39/224 (17%), Positives = 87/224 (39%), Gaps = 31/224 (14%) Query 345 GPENPKLEM------LEKILQR-QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD 397 G +PK+E+ ++ +L Q + R ++ T T++ + L ++++ Sbjct 420 GLLDPKIEVRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEA------- 472 Query 398 IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG 457 G + + + ++ E+I+ + GT +++V ++ EG+DIP ++VV Sbjct 473 -------GIKVNYLHSEIKTLERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILD 525 Query 458 -----LLTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEA---LETLMEQAVAA 509 L + S++Q GRA + + + + + I+E E M+ Sbjct 526 ADKEGFLRSNRSLIQTIGRAARNDKGEVIMYADKMTDSMKYAIDETQRRREIQMKH--NE 583 Query 510 VQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQ 553 + KI DL A + + ++ + Q Sbjct 584 KHGITPKTINKKIHDLISATVENDENNDKAQTVIPKKMTKKERQ 627 >sp|Q8NXM0|UVRB_STAAW UvrABC system protein B OS=Staphylococcus aureus (strain MW2) OX=196620 GN=uvrB PE=3 SV=1 Length=663 Score = 80.6 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 39/224 (17%), Positives = 87/224 (39%), Gaps = 31/224 (14%) Query 345 GPENPKLEM------LEKILQR-QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD 397 G +PK+E+ ++ +L Q + R ++ T T++ + L ++++ Sbjct 420 GLLDPKIEVRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEA------- 472 Query 398 IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG 457 G + + + ++ E+I+ + GT +++V ++ EG+DIP ++VV Sbjct 473 -------GIKVNYLHSEIKTLERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILD 525 Query 458 -----LLTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEA---LETLMEQAVAA 509 L + S++Q GRA + + + + + I+E E M+ Sbjct 526 ADKEGFLRSNRSLIQTIGRAARNDKGEVIMYADKMTDSMKYAIDETQRRREIQMKH--NE 583 Query 510 VQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQ 553 + KI DL A + + ++ + Q Sbjct 584 KHGITPKTINKKIHDLISATVENDENNDKAQTVIPKKMTKKERQ 627 >sp|Q6GB72|UVRB_STAAS UvrABC system protein B OS=Staphylococcus aureus (strain MSSA476) OX=282459 GN=uvrB PE=3 SV=1 Length=663 Score = 80.6 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 39/224 (17%), Positives = 87/224 (39%), Gaps = 31/224 (14%) Query 345 GPENPKLEM------LEKILQR-QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVD 397 G +PK+E+ ++ +L Q + R ++ T T++ + L ++++ Sbjct 420 GLLDPKIEVRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEA------- 472 Query 398 IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG 457 G + + + ++ E+I+ + GT +++V ++ EG+DIP ++VV Sbjct 473 -------GIKVNYLHSEIKTLERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILD 525 Query 458 -----LLTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEA---LETLMEQAVAA 509 L + S++Q GRA + + + + + I+E E M+ Sbjct 526 ADKEGFLRSNRSLIQTIGRAARNDKGEVIMYADKMTDSMKYAIDETQRRREIQMKH--NE 583 Query 510 VQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQ 553 + KI DL A + + ++ + Q Sbjct 584 KHGITPKTINKKIHDLISATVENDENNDKAQTVIPKKMTKKERQ 627 >sp|Q7TV80|UVRB_PROMM UvrABC system protein B OS=Prochlorococcus marinus (strain MIT 9313) OX=74547 GN=uvrB PE=3 SV=1 Length=679 Score = 80.6 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 19/129 (15%) Query 363 SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE 422 + R +I T T++ A L +L + D+R + L + + ++ E Sbjct 440 RAEKQERVLITTLTKRMAEDLTDYLAEN------DVRVRYL--------HSEIHSIERIE 485 Query 423 VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQS 477 +IQ + G ++LV ++ EGLD+P ++VV L E S++Q GRA Sbjct 486 IIQDLRLGEYDVLVGVNLLREGLDLPEVSLVVILDADKEGFLRAERSLIQTIGRAARHVD 545 Query 478 VYAFVATEG 486 A + + Sbjct 546 GMALLYADN 554 >sp|A8FQW4|RAPA_SHESH RNA polymerase-associated protein RapA OS=Shewanella sediminis (strain HAW-EB3) OX=425104 GN=rapA PE=3 SV=1 Length=968 Score = 81.0 bits (198), Expect = 2e-14, Method: Composition-based stats. Identities = 74/452 (16%), Positives = 146/452 (32%), Gaps = 40/452 (9%) Query 27 GAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGP 86 G GKT A + + L T +++V+V L Q E R + +++V + Sbjct 179 GLGKTIEAGLIIHQQLLTGRAERILVIVPD-TLRHQWLVEMLRRFNLKFSVFDEDRCIEA 237 Query 87 RAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHT--HKDTVYNV 144 A + L+IC+ L + E + L+VVDE HH +D Sbjct 238 YADNDNPFYTEQLVICS----LELLRKKKRLEQALDADWDLMVVDEAHHLEWTEDAPSRA 293 Query 145 IMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCC 204 + ++ +P VL LTA+P G +H +L LD + Sbjct 294 -----YRVVEALSEVVPGVLLLTATP------DQLGHQSHFARL-RLLDPDRFYDYEAFL 341 Query 205 PQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVK 264 + E S + D + L + + + P ++ T + + + Sbjct 342 KE--ESSYKDVASAADALASGNKLPDDAINSLTELLSEKDITPSINVIQATDI-DPDQQQ 398 Query 265 LSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAE 324 + L L ++ L R + A + R +A + ++ Sbjct 399 DARDELLQELLDRHGTGRVLYRNSRASVKGFPTRIFNAYPQAMPSQYVTAARVGAMMNGH 458 Query 325 RRLLALFDDRKNELAHLATHGPENP---KLEMLEKILQRQFSSSNSPRGIIFTRTRQSAH 381 + + K + L + + +I ++A Sbjct 459 LDTQGKVKQALSPEKIYQDFDSNSASWWKFDPRVDWLINFLKENRRKKVLIIASQAETAL 518 Query 382 SLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF--QDGTLNLLVATS 439 SL L+ ++G+QT M+ ++ + F + G L+ + Sbjct 519 SLEEALRTREGIQTTVFH-------------EGMSIIERDKAGAYFAQETGGAQALICSE 565 Query 440 VAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 + EG + + ++ + L N + Q GR Sbjct 566 IGSEGRNFQFASQLILFDLPLNPDLLEQRIGR 597 >sp|Q8N3C0|ASCC3_HUMAN Activating signal cointegrator 1 complex subunit 3 OS=Homo sapiens OX=9606 GN=ASCC3 PE=1 SV=3 Length=2202 Score = 81.4 bits (199), Expect = 2e-14, Method: Composition-based stats. Identities = 42/176 (24%), Positives = 73/176 (41%), Gaps = 19/176 (11%) Query 7 QWEVIMPALE-GKNIIIWLPTGAGKTRAAAYVAKRHLET--------VDGAKVVVLVNRV 57 Q V A +N++I PTGAGKT A + + K+V + Sbjct 481 QSIVFETAYNTNENMLICAPTGAGKTNIAMLTVLHEIRQHFQQGVIKKNEFKIVYVAPMK 540 Query 58 HLVTQHGEEF-RRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEE 116 L + + F RR+ V L+GDM +L+ T E + + + Sbjct 541 ALAAEMTDYFSRRLEPLGIIVKELTGDMQLS---KSEILRTQMLVTTPEKW--DVVTRKS 595 Query 117 EEHVELTVFS-LIVVDECH--HTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS 169 V L+ L+++DE H H + V I+++ L ++ Q + ++LGL+A+ Sbjct 596 VGDVALSQIVRLLILDEVHLLHEDRGPVLESIVARTLRQ-VESTQSMIRILGLSAT 650 Score = 69.1 bits (167), Expect = 1e-10, Method: Composition-based stats. Identities = 54/303 (18%), Positives = 99/303 (33%), Gaps = 15/303 (5%) Query 19 NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEE--FRRMLDGRWT 76 N+++ PTG+GKT AA R +K V + LV + ++ R Sbjct 1344 NVLLGAPTGSGKTVAAELAIFRVFNKYPTSKAVYIAPLKALVRERMDDWKVRIEEKLGKK 1403 Query 77 VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECH-H 135 V L+GD+ P DL++ T E S + +V+ +++++DE H Sbjct 1404 VIELTGDVTPDM---KSIAKADLIVTTPEKWDGVSRSWQNRNYVQ--QVTILIIDEIHLL 1458 Query 136 THKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTW 195 + ++ + +++GL S A L +N N Sbjct 1459 GEERGPVLEVIVSRTNFISSHTEKPVRIVGL--STALANARDLADWLNIKQMGLFNFRPS 1516 Query 196 CIMSPQNCCPQLQE---HSQQPCKQYNLCHR--RSQDPFGDLLKKLMDQIHDHLEMPELS 250 P Q + + + RS P +L + + L EL Sbjct 1517 VRPVPLEVHIQGFPGQHYCPRMASMNKPAFQAIRSHSPAKPVLIFVSSRRQTRLTALELI 1576 Query 251 RKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFY 310 T+ +Q + + E + R L L + H + D + F Sbjct 1577 AFLATEEDPKQWLNMDEREMENIIATVRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFV 1636 Query 311 HRE 313 + + Sbjct 1637 NCK 1639 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 32/171 (19%), Positives = 64/171 (37%), Gaps = 38/171 (22%) Query 363 SSSNSPRGIIFT----RTRQSAHSLLLWLQQQQGL----------------QTVDIRAQL 402 S S + +IF +TR +A L+ +L ++ D +L Sbjct 1551 SHSPAKPVLIFVSSRRQTRLTALELIAFLATEEDPKQWLNMDEREMENIIATVRDSNLKL 1610 Query 403 LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-------- 454 + G + +RD++ V + F + + +L+ATS G++ P V++ Sbjct 1611 TLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGVNFPAHLVIIKGTEYYDG 1670 Query 455 ---RY-GLLTNEISMVQARGRARA----DQSVYAFVATEGSRELKRELINE 497 RY ++Q GRA DQ + + ++ ++ + E Sbjct 1671 KTRRYVDFPIT--DVLQMMGRAGRPQFDDQGKAVILVHDIKKDFYKKFLYE 1719 >sp|Q8R8M4|UVRB_CALS4 UvrABC system protein B OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) OX=273068 GN=uvrB PE=3 SV=1 Length=662 Score = 80.6 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 30/193 (16%), Positives = 72/193 (37%), Gaps = 21/193 (11%) Query 365 SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI 424 + R ++ T T++ A L +L++ +G + + ++ E+I Sbjct 442 AKGYRVLVTTLTKKMAEDLSDYLKE--------------MGIRVRYLHSDIETIERVEII 487 Query 425 QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVY 479 + + G ++L+ ++ EGLDIP +V L +E S++Q GRA + Sbjct 488 RDLRLGKFDVLIGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGRAARNAEGR 547 Query 480 AFVATEGSRELKRELINEA--LETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQA 537 + + R I+E + + + + + +Q + ++ + Sbjct 548 VIMYADTITNSMRRAIDETNRRRKIQMEYNEKHGIVPKTVVKGVRDVIQATQVAEKEEKY 607 Query 538 AQRENQRQQFPVE 550 + N ++ Sbjct 608 EKTANFYDPDVIK 620 >sp|Q84T03|RH27_ORYSJ DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0802700 PE=3 SV=1 Length=590 Score = 80.2 bits (196), Expect = 2e-14, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 40/122 (33%), Gaps = 14/122 (11%) Query 357 ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT 416 +L + + ++F + S + L + I + G Sbjct 338 VLYAFLKKKQNKKVMVFFSSCNSVK------FHAELLNFLQIECSDIHG--------KQK 383 Query 417 QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQ 476 Q+ + F +L+ T+VA GLDIP + +V+Y + GR + Sbjct 384 QQKRTTTFFNFCKAEKGILLCTNVAARGLDIPDVDFIVQYDPPDEPKDYIHRVGRTARGE 443 Query 477 SV 478 Sbjct 444 KG 445 Score = 61.7 bits (148), Expect = 1e-08, Method: Composition-based stats. Identities = 31/135 (23%), Positives = 50/135 (37%), Gaps = 9/135 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTR---AAAYVAKRHLETVD--GAKVVVLVNRVHLVT 61 Q I L GK+++ TG+GKT A H + G VVV+ L Sbjct 123 QARSIPHLLNGKDVMGAAKTGSGKTLAFLIPAIEMLHHAHFMPRNGTGVVVVCPTRELAI 182 Query 62 QHGEEFRRMLDGRWTVTT-LSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 Q + ++ + G G R LA+ +LL+ T L L + + + Sbjct 183 QTHNVAKELMKYHSQTLGYIIGGNGRRGEADQLAKGVNLLVATPGRLLDHLQNTKGFIYR 242 Query 121 ELTVFSLIVVDECHH 135 L +++DE Sbjct 243 RLK---CLIIDEADR 254 >sp|A6M2Z0|UVRB_CLOB8 UvrABC system protein B OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) OX=290402 GN=uvrB PE=3 SV=1 Length=657 Score = 80.6 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 31/175 (18%), Positives = 69/175 (39%), Gaps = 20/175 (11%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 R +I T T++ + L +L + +G + + + ++ ++I+ + Sbjct 446 RILITTLTKRMSEDLTKYLIE--------------LGVKTTYMHSDIDTIERMKIIRDLR 491 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGR-ARADQSVYAFV 482 G ++LV ++ EGLDIP +V L +E S++Q GR AR +S Sbjct 492 LGEYDVLVGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGRAARNSESKVIMY 551 Query 483 ATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQA 537 A ++ + + + +++ + +RD+ +A + Sbjct 552 ADNITKSMDKAMKETERRRAIQKDYNERHGIVPTTIIKDVRDIIEATKVAEEVEE 606 Score = 34.0 bits (76), Expect = 5.7, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 19/48 (40%), Gaps = 5/48 (10%) Query 26 TGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDG 73 TG+GKT A V ++ ++L + L Q EF+ Sbjct 40 TGSGKTFTMANVIEKLQRPT-----IILAHNKTLAAQLCSEFKEFFPD 82 >sp|Q928A4|UVRB_LISIN UvrABC system protein B OS=Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262) OX=272626 GN=uvrB PE=3 SV=1 Length=658 Score = 80.6 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 37/262 (14%), Positives = 90/262 (34%), Gaps = 25/262 (10%) Query 289 DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPEN 348 + L + +R + + L ++ L + P Sbjct 369 PSALDNRPLRLEEFEKHINQIMFISATPGPYELEKNPDVIEQIIRPTGLLDPIVEIRPIQ 428 Query 349 PKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGN 408 +++ L + + R +I T T++ + L +L++ G Sbjct 429 GQIDDLMDEIND--RVEKNERVLITTLTKKMSEDLTNYLKEA--------------GVKV 472 Query 409 SSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEI 463 + + ++ E+I+ + G +++V ++ EG+D+P ++V L +E Sbjct 473 QYLHSEVKTLERIEIIRDLRLGVYDVIVGINLLREGIDLPEVSLVAILDADKEGFLRSER 532 Query 464 SMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIR 523 S++Q GRA +++ + + ++ + N ET + + IR Sbjct 533 SLIQTMGRAARNENGRVIMYAD---KMTDSMRNSISETERRRKIQIEYNEKHGITPKTIR 589 Query 524 -DLQQAALTKRAAQAAQRENQR 544 +++ AA + Q Sbjct 590 KEIRGIIAATSAADEREAIKQH 611 >sp|B6EPV7|RAPA_ALISL RNA polymerase-associated protein RapA OS=Aliivibrio salmonicida (strain LFI1238) OX=316275 GN=rapA PE=3 SV=1 Length=969 Score = 81.0 bits (198), Expect = 2e-14, Method: Composition-based stats. Identities = 81/462 (18%), Positives = 159/462 (34%), Gaps = 60/462 (13%) Query 27 GAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGP 86 G GKT A + + + + +V+++V L Q E R + +++ Sbjct 180 GLGKTIEAGMIIHQQVLSGRAERVLIVVP-ETLQHQWLVEMMRRFNLHFSIF-------D 231 Query 87 RAGFGHLARCHDLLICTAELLQMAL----TSPEEEEHVELTVFSLIVVDECHH-----TH 137 + TA+L+ +L S E V + L+VVDE HH T Sbjct 232 EERCIESYADSENPFDTAQLVLCSLDFIRRSKRRFEQVVEADWDLLVVDEAHHLEWNQTK 291 Query 138 KDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCI 197 Y VI A+ VL LTA+P + G +H +L LD Sbjct 292 PSRAYQVI--------EAIAEETAGVLLLTATP------EQLGHESHFARL-RLLDPDRF 336 Query 198 MSPQNCCPQLQEHSQQPCKQYNLC---HRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFG 254 + +++ QP + + + + +L+ + D + + G Sbjct 337 YDYDAFVEEERQY--QPVADAVTALMSGDKLSNDAKNRIAELLSE-QDVEPLFRIIESDG 393 Query 255 TQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREH 314 ++ + QV + + RV + R + AL R Sbjct 394 SEEQQSQVRQELVDNLMDRHGTGRVLFRNTRAAIKGFPQRNLNLMPMALPPQYATSMRVA 453 Query 315 VTKTQILCAERRLLALF---DDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGI 371 + E R + + + + AT +P++ L ++L+ + + + + Sbjct 454 TMMGGRMSNEARAMKMLYPEEIFQEFEGDSATWWQFDPRVNWLLELLKE----NRNEKVL 509 Query 372 IFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF--QD 429 I +A L L++++G IR + M+ ++ + F ++ Sbjct 510 IIASRASTALQLEQALREREG-----IRGTVF--------HEGMSIIERDKAAAYFAQEE 556 Query 430 GTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 G +L+ + + EG + N +V + L N + Q GR Sbjct 557 GGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGR 598 >sp|Q7S873|DBP7_NEUCR ATP-dependent RNA helicase dbp-7 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=dbp-7 PE=3 SV=1 Length=814 Score = 80.6 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 36/205 (18%), Positives = 63/205 (31%), Gaps = 27/205 (13%) Query 306 LQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSS 365 L+D H AE + +L A P +L L +L+ F+ Sbjct 378 LEDAVHITASKSDMEKDAETGAVETAFSAPAQLKQAAIVTPAKLRLVTLIALLKSTFARK 437 Query 366 NS-PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRA-------------------QLLIG 405 S + IIF S L+ + + + Sbjct 438 GSVMKAIIFISCADSVDYHFELLKSTTPRAEPEPKPEGEAPTKPNIHIESTVAPATYITS 497 Query 406 AGNS-----SQSTHMTQRDQQEVIQKFQDGTLN-LLVATSVAEEGLDIPHCNVVVRYGLL 459 N + Q + ++ F + +L+ T ++ GLD+P +V+ Y Sbjct 498 PANPTVMLHKLHGSLAQPVRSATLKAFSECKDPAVLITTDISSRGLDVPAVELVIEYDPA 557 Query 460 TNEISMVQARGR-ARADQSVYAFVA 483 V GR ARA ++ A + Sbjct 558 FAVPDHVHRIGRTARAGRAGKAVLF 582 Score = 50.2 bits (118), Expect = 5e-05, Method: Composition-based stats. Identities = 29/154 (19%), Positives = 49/154 (32%), Gaps = 32/154 (21%) Query 8 WEVIMPALEGKNIIIWL-----------PTGAGKTRAAAY----VAKRHLETVDGA---- 48 E+ P KN I L TG+GKT A DG Sbjct 164 LEMKAPTAIQKNTIPQLVKEDSDAFLQAETGSGKTLAYLLPIVHRILALSHNEDGTPKTT 223 Query 49 --------KVVVLVNRVHLVTQHGEEFRRML--DGRWTVTTLSGDMGPRAGFGHLARCHD 98 ++L L Q ++L TT+ G ++ + + + Sbjct 224 KVHRNSGLFAIILAPTRELCKQIAVVLEKVLRCAPWLVCTTVIGGESKKSEKARIRKGVN 283 Query 99 LLICTAELLQMALTSPEEEEHVELTVFSLIVVDE 132 +LI T L L + + +++ +V+DE Sbjct 284 ILIATPGRLTDHLDNTK---VLDVGTVRWLVLDE 314 >sp|A1DNF9|DBP4_NEOFI ATP-dependent RNA helicase dbp4 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dbp4 PE=3 SV=1 Length=810 Score = 80.6 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 43/254 (17%), Positives = 85/254 (33%), Gaps = 21/254 (8%) Query 275 QEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDR 334 + R+ L ++ DA++ H + L + L + Sbjct 201 EADRILDLGFQQTVDAIIGH-LPKERQTLLFSATQTKKVSDLARLSLQDPEYVAVHETAS 259 Query 335 KNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQ 394 + L H P + L IL S+ + ++F + + + + Q Sbjct 260 SATPSKLQQHYVITPLPQKL-DILWSFIRSNLKSKTMVFLSSGKQVRFVYESFRHLQP-- 316 Query 395 TVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV 454 G Q + +++ +F +L +T VA GLD P + V+ Sbjct 317 ----------GIPLMHLHGRQKQGGRLDIVTRFSQSKHCVLFSTDVAARGLDFPAVDWVI 366 Query 455 RYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM 513 + + + + GR AR ++ A + + S E L+ L ++ V + Sbjct 367 QLDCPEDADTYIHRVGRTARYEREGRAVLFLDPSEE------EGMLKRLEQKKVPIEKIN 420 Query 514 DQAEYQAKIRDLQQ 527 +A Q I+D Q Sbjct 421 IKANKQQSIKDQLQ 434 Score = 54.4 bits (129), Expect = 3e-06, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 48/135 (36%), Gaps = 10/135 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAY--VAKRHLETV----DGAKVVVLVNRVHLV 60 Q I AL+G++++ TG+GKT A V + DG ++L L Sbjct 74 QSRAISHALKGRDVLGAAKTGSGKTL-AFLVPVLENLYRKQWAEHDGLGALILSPTRELA 132 Query 61 TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 Q E R++ L ++L+CT + L ++ Sbjct 133 IQIFEVLRKIGRYHTFSAGLVIGGKSLKEEQERLGRMNILVCTPGRMLQHL---DQTALF 189 Query 121 ELTVFSLIVVDECHH 135 + ++V+DE Sbjct 190 DTYNLQMLVLDEADR 204 >sp|Q326H6|RAPA_SHIBS RNA polymerase-associated protein RapA OS=Shigella boydii serotype 4 (strain Sb227) OX=300268 GN=rapA PE=3 SV=1 Length=968 Score = 81.0 bits (198), Expect = 2e-14, Method: Composition-based stats. Identities = 80/476 (17%), Positives = 152/476 (32%), Gaps = 44/476 (9%) Query 5 SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ 62 +Q + +++ G GKT A + + L + +V+++V L Q Sbjct 156 PHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVP-ETLQHQ 214 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 E R + R+ + + + L+IC+ L A S + EH+ Sbjct 215 WLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICS---LDFARRSKQRLEHLCE 271 Query 123 TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG 180 + L+VVDE HH +D + Q A+ +P VL LTA+P + G Sbjct 272 AEWDLLVVDEAHHLVWSEDAPSRE-----YQAIEQLAEHMPGVLLLTATP------EQLG 320 Query 181 AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI 240 +H +L LD + + + +P D L L + I Sbjct 321 MESHFARL-RLLDPNRFHDFAQFVEE--QKNYRPVADAVAMLLAGNKLSNDELNMLGEMI 377 Query 241 HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV 300 + P L Q + + + RV + R + Sbjct 378 GEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIK 437 Query 301 DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG---PENPKLEMLEKI 357 L + AE R + + + +P++E L Sbjct 438 LPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGY 497 Query 358 LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ 417 L S + ++ +A L L++++G++ M+ Sbjct 498 LTSH----RSQKVLVICAKAATALQLEQVLREREGIRAAVFH-------------EGMSI 540 Query 418 RDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 ++ F +D +L+ + + EG + + +V + L N + Q GR Sbjct 541 IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR 596 >sp|Q5HQX0|UVRB_STAEQ UvrABC system protein B OS=Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A) OX=176279 GN=uvrB PE=3 SV=1 Length=661 Score = 80.6 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 34/215 (16%), Positives = 80/215 (37%), Gaps = 27/215 (13%) Query 349 PKLEMLEKILQR-QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG 407 P ++ +L Q R ++ T T++ + L ++++ G Sbjct 428 PTENQIDDLLSEIQDRVDKDERVLVTTLTKKMSEDLTTYMKEA--------------GIK 473 Query 408 NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNE 462 + + + ++ E+I+ + GT + +V ++ EG+DIP ++VV L ++ Sbjct 474 VNYLHSEIKTLERIEIIRDLRMGTYDAIVGINLLREGIDIPEVSLVVILDADKEGFLRSD 533 Query 463 ISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQA----EY 518 S++Q GRA + + + ++ + ET + + + Sbjct 534 RSLIQTIGRAARNDKGEVIMYAD---KITDSMQYAIDETQRRREIQIAHNKEHGITPKTI 590 Query 519 QAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQ 553 KI D+ A + Q+ ++ + Q Sbjct 591 NKKIHDVISATVESDETNQQQQTELPKKMTKKERQ 625 >sp|B8CIB4|RAPA_SHEPW RNA polymerase-associated protein RapA OS=Shewanella piezotolerans (strain WP3 / JCM 13877) OX=225849 GN=rapA PE=3 SV=1 Length=968 Score = 81.0 bits (198), Expect = 2e-14, Method: Composition-based stats. Identities = 79/459 (17%), Positives = 152/459 (33%), Gaps = 54/459 (12%) Query 27 GAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGP 86 G GKT A + + L T +++V+V L Q E R + R++V + Sbjct 179 GLGKTIEAGLIIHQQLLTGRAERILVIVPD-TLRHQWLVEMLRRFNLRFSVFDEDRCVEA 237 Query 87 RAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHT--HKDTVYNV 144 A + L+IC+ L + E + L+VVDE HH +D Sbjct 238 YADNDNPFYTEQLVICS----LELLRKKKRLEQALDADWDLMVVDEAHHLEWSEDAPSRA 293 Query 145 IMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCC 204 ++ ++ +P VL LTA+P G +H +L LD + Sbjct 294 -----YKVVEALSEVVPGVLLLTATP------DQLGHQSHFARL-RLLDPDRFYDYPSFL 341 Query 205 PQLQEHSQQPCK-QYNLCHRRSQDPFGDLLKKLM--DQIHDHLEMPELSRKFGT---QMY 258 + + + C L +L+ I D + + + + Q Sbjct 342 KEEESYKDVATAADALACGESLSSEAIASLTQLLSEKDISDSINLIQDASANADKRNQAR 401 Query 259 EQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHD----TVRAVDALAALQDFYHREH 314 E+ + +L + + + A L IH + + H + Sbjct 402 EELLQELLDRHGTGRVLYRNSRASVKGFPTRNLHIHPQPMPEQYVTASRVSAMMNKHLDT 461 Query 315 VTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFT 374 K + + + ++ FD K + L ++ S + +I Sbjct 462 NAKVRQVLSPEKIYQDFDSGSASWW----------KFDPRVDWLIDFLKTNRSKKVLIIA 511 Query 375 RTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF--QDGTL 432 ++A SL L+ ++G+Q M+ ++ + F + G Sbjct 512 SQAETALSLEEALRTREGIQATVFH-------------EGMSIIERDKAGAYFAQETGGA 558 Query 433 NLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 L+ + + EG + + +V + L N + Q GR Sbjct 559 QALICSEIGSEGRNFQFASHLVLFDLPLNPDLLEQRIGR 597 >sp|Q8NHQ9|DDX55_HUMAN ATP-dependent RNA helicase DDX55 OS=Homo sapiens OX=9606 GN=DDX55 PE=1 SV=3 Length=600 Score = 80.2 bits (196), Expect = 2e-14, Method: Composition-based stats. Identities = 30/169 (18%), Positives = 54/169 (32%), Gaps = 20/169 (12%) Query 332 DDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQ 391 + L + + K L L+ + ++F T L+ Sbjct 236 QKTPSRLENYYMVCKADEKFNQLVHFLRNH----KQEKHLVFFSTCACVEYYGKALEV-- 289 Query 392 GLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCN 451 L+ G M + + ++ +F+ +LV T V G+DIP N Sbjct 290 ----------LVKGVKIMCIHGKMKYK-RNKIFMEFRKLQSGILVCTDVMARGIDIPEVN 338 Query 452 VVVRYGLLTNEISMVQARGRA---RADQSVYAFVATEGSRELKRELINE 497 V++Y +N + V GR S F+ + IN+ Sbjct 339 WVLQYDPPSNASAFVHRCGRTARIGHGGSALVFLLPMEESYINFLAINQ 387 Score = 47.1 bits (110), Expect = 5e-04, Method: Composition-based stats. Identities = 20/121 (17%), Positives = 40/121 (33%), Gaps = 11/121 (9%) Query 26 TGAGKTRAAAYVAKRHL----ETVDGAKV--VVLVNRVHLVTQHGEEFRRMLD--GRWTV 77 TG+GKT A L E + ++V +++ L Q E ++ Sbjct 55 TGSGKTLAFVIPILEILLRREEKLKKSQVGAIIITPTRELAIQIDEVLSHFTKHFPEFSQ 114 Query 78 TTLSGDMGPRAGFGHLARC-HDLLICTAELLQMALTSPEEEEHV--ELTVFSLIVVDECH 134 G P + ++++ T L+ E + + ++V+DE Sbjct 115 ILWIGGRNPGEDVERFKQQGGNIIVATPGRLEDMFRRKAEGLDLASCVRSLDVLVLDEAD 174 Query 135 H 135 Sbjct 175 R 175 >sp|Q6F9D2|UVRB_ACIAD UvrABC system protein B OS=Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1) OX=62977 GN=uvrB PE=3 SV=1 Length=675 Score = 80.6 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 32/163 (20%), Positives = 68/163 (42%), Gaps = 20/163 (12%) Query 349 PKLEMLEKILQRQ-FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG 407 P L ++ +L R +I T T++ A L +L++ G Sbjct 430 PVLTQVDDVLSEINIRKEMDERVLITTLTKRMAEDLTSYLKEY--------------GVK 475 Query 408 NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNE 462 + + + ++ ++I + + G ++LV ++ EGLD+P ++V L +E Sbjct 476 VAYLHSDIDTVERVKIIHELRTGVYDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSE 535 Query 463 ISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQ 505 S++Q GRA + A + + + ++ I+E +Q Sbjct 536 RSLIQTIGRAARNIKGKAILYADRMTDSMQKAIDETERRREKQ 578 >sp|P53734|DBP6_YEAST ATP-dependent RNA helicase DBP6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DBP6 PE=1 SV=1 Length=629 Score = 80.2 bits (196), Expect = 2e-14, Method: Composition-based stats. Identities = 48/288 (17%), Positives = 103/288 (36%), Gaps = 27/288 (9%) Query 275 QEQRVYALHLRRYNDALLIHDTVRAVDALAA--LQDFYHREHVTKTQILC-----AERRL 327 + R+ + + L+ H +D L ++ + T T+ L + Sbjct 342 EADRLLNQSFQGWCPKLMSHLKTDKLDTLPGNVIKMIFSATLTTNTEKLNGLNLYKPKLF 401 Query 328 LALFDDRKNELAHLATHGPENP-------KLEMLEKILQRQFSSSNSPRGIIFTRTRQSA 380 L D L P L +L I Q S + + +IF ++ +S+ Sbjct 402 LKQTDKLYQLPNKLNEFNINIPTAKSVYKPLILLYSICQFMAHSPIAAKILIFVKSNESS 461 Query 381 HSLLLWLQQQQGLQTVD--IRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGT----LNL 434 L LQ ++ ++ + +S +++ ++ + ++++ F + + + Sbjct 462 IRLSKLLQLICESRSQSSVLKNLQNLAVSINSVNSNNSKAENKKIVANFSHHSESAGITI 521 Query 435 LVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARAD--QSVYAFVATEGSR--- 488 L+ T + G+DI V+ Y + V GR ARA+ S Y + G R Sbjct 522 LITTDIMSRGIDINDITQVINYDPPMSSQQYVHRVGRTARANELGSAYNLLVGRGERTFF 581 Query 489 -ELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAA 535 +L ++L + + + + D Y + + L+ A Sbjct 582 DDLNKDLDRDGKSVQPLELDFTLLESDSELYTSSLESLKNYHNNTAQA 629 Score = 52.5 bits (124), Expect = 9e-06, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 46/121 (38%), Gaps = 10/121 (8%) Query 20 IIIWLPTGAGKTRAAAYVAKRHL--ETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTV 77 I++ TG+GKT A + + L ++ + +++V L+ Q ++ G + Sbjct 230 ILVNAATGSGKTLAYSIPIVQTLFKRQINRLRCIIIVPTKLLINQVYTTLTKLTQGTSLI 289 Query 78 TTLSGDMGPRAGFGHLARCH---DLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECH 134 ++ + H + D+LI T L L + L +++DE Sbjct 290 VSI-AKLENSLKDEHKKLSNLEPDILITTPGRLVDHLNMKS----INLKNLKFLIIDEAD 344 Query 135 H 135 Sbjct 345 R 345 >sp|A2C5S6|UVRB_PROM3 UvrABC system protein B OS=Prochlorococcus marinus (strain MIT 9303) OX=59922 GN=uvrB PE=3 SV=1 Length=679 Score = 80.2 bits (196), Expect = 2e-14, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 19/129 (15%) Query 363 SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE 422 + R +I T T++ A L +L + D+R + L + + ++ E Sbjct 440 RAKKQERVLITTLTKRMAEDLTDYLAEN------DVRVRYL--------HSEIHSIERIE 485 Query 423 VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQS 477 +IQ + G ++LV ++ EGLD+P ++VV L E S++Q GRA Sbjct 486 IIQDLRLGEYDVLVGVNLLREGLDLPEVSLVVILDADKEGFLRAERSLIQTIGRAARHVD 545 Query 478 VYAFVATEG 486 A + + Sbjct 546 GMALLYADN 554 >sp|Q61R02|DDX55_CAEBR Probable ATP-dependent RNA helicase DDX55 homolog OS=Caenorhabditis briggsae OX=6238 GN=CBG06798 PE=3 SV=1 Length=577 Score = 80.2 bits (196), Expect = 2e-14, Method: Composition-based stats. Identities = 57/390 (15%), Positives = 132/390 (34%), Gaps = 30/390 (8%) Query 197 IMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQ 256 I + + ++ P ++ PF + +K ++ + ++ + + F + Sbjct 71 IQNARLQPNEIGALILSPSRELCSQIVNVIKPFAEKMKLNVETVTGGQKVDKNIKMFKNK 130 Query 257 MYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVT 316 + ++ + +Q ++ + L+I + R + +H+ Sbjct 131 --DINILVATPGRLFQIIQHEKTMIARAMKGVQLLVIDEADR-------FNEIQFEDHMR 181 Query 317 KTQILCAERRLLALFDD-RKNELAHLATHGPENPKLEMLEKI--------LQRQF----S 363 + ++R LF + E L G N K + + L+ F + Sbjct 182 EILSCIPKQRRTGLFSATQVKEEDDLMVFGLRNAKQVKVSQERNSAAPSTLKNYFVECPA 241 Query 364 SSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEV 423 + + F R R L+ + I + L + + + Sbjct 242 DEKTSVCLEFIRQRTDKKVLIFFPSCNSVRYFHKIFERCLTKRPLFAVHGKCSNPHRAAQ 301 Query 424 IQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFV 482 I+ F + T ++++T V G+DI + V++Y L + V GR AR + A + Sbjct 302 IKAFSESTNGVMISTDVMARGIDITDIDWVIQYDLPKHSSWFVHRAGRTARCGRDGNALI 361 Query 483 ATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQREN 542 + ++ + +E+ +AE +L+Q + + + A E Sbjct 362 LIATEQLAYVSFLDNHEKVKLEEVKVPTSTSRKAE------ELRQKMIKIQVSDRAILEL 415 Query 543 QRQQFPVEHVQLLCINCMVAVGHGSDLRKV 572 + F V H++ + + DL V Sbjct 416 GTRAF-VSHIESYAKHDCHLICSLDDLNVV 444 Score = 59.0 bits (141), Expect = 9e-08, Method: Composition-based stats. Identities = 28/171 (16%), Positives = 59/171 (35%), Gaps = 13/171 (8%) Query 25 PTGAGKTRAAAYVAKRHLET----VDGAKVVVLVNRVHLVTQHGEEFRRML-DGRWTVTT 79 PTG+GKT A R ++ + ++L L +Q + + V T Sbjct 54 PTGSGKTLAFVLPMMRMIQNARLQPNEIGALILSPSRELCSQIVNVIKPFAEKMKLNVET 113 Query 80 LSGDMGPRAGFGHLA-RCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHTHK 138 ++G + ++L+ T L + + + L+V+DE Sbjct 114 VTGGQKVDKNIKMFKNKDINILVATPGRLFQIIQHEKTMIARAMKGVQLLVIDEADR--- 170 Query 139 DTVYNVIMSQYLELKLQRAQPLPQVLGL-TASPGTGGASKLDGAINHVLQL 188 +N I + ++ P + GL +A+ + + + Q+ Sbjct 171 ---FNEIQFEDHMREILSCIPKQRRTGLFSATQVKEEDDLMVFGLRNAKQV 218 >sp|Q2H2J1|DBP4_CHAGB ATP-dependent RNA helicase DBP4 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=DBP4 PE=3 SV=1 Length=825 Score = 80.6 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 43/266 (16%), Positives = 79/266 (30%), Gaps = 21/266 (8%) Query 275 QEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAE--RRLLALFD 332 + R+ + + DAL+ H L + + + + E A Sbjct 207 EADRIMDMGFQSAVDALVEHLPTTRQTLLFSATQSKRVSDLARLSLKEPEYVSAHEAAVS 266 Query 333 DRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQG 392 L P KL+ L L+ + I+F + + + ++ Q Sbjct 267 ATPTNLQQSYIVTPLAEKLDTLFGFLRTNLK----SKIIVFFSSGKQVRFVFESFKRMQP 322 Query 393 LQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNV 452 G Q + E+ +F L AT V G+D P + Sbjct 323 ------------GIPLLHLHGRQKQVARMEITSRFSSAKYGCLFATDVVARGVDFPAVDW 370 Query 453 VVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRE--LKRELINEALETLMEQAVAA 509 VV+ + + + GR AR + A + E S E + L + + Sbjct 371 VVQADCPEDADTYIHRVGRTARYESKGRAVLFLEPSEEAGFLKRLEQKKVPLQKVNVREN 430 Query 510 VQKMDQAEYQAKIRDLQQAALTKRAA 535 +K + E Q+ + A Sbjct 431 KKKSIKNELQSYNFQSPDLKYLGQKA 456 Score = 56.0 bits (133), Expect = 9e-07, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 50/134 (37%), Gaps = 8/134 (6%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT---RAAAYVAKRHLETV--DGAKVVVLVNRVHLVT 61 Q I AL+G++I+ TG+GKT H + DG +++ L Sbjct 80 QRAAIPLALKGRDILGAAKTGSGKTLAFLVPVLEKLYHAKWTEYDGLGALIISPTRELAV 139 Query 62 QHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVE 121 Q E R++ + L ++L+CT + L ++ + + Sbjct 140 QIFEVLRKIGRNHFFSAGLVIGGKSLKEEAERLGRMNILVCTPGRMLQHL---DQTANFD 196 Query 122 LTVFSLIVVDECHH 135 + ++V+DE Sbjct 197 VNNLQILVLDEADR 210 >sp|O67708|UVRB_AQUAE UvrABC system protein B OS=Aquifex aeolicus (strain VF5) OX=224324 GN=uvrB PE=3 SV=1 Length=663 Score = 80.2 bits (196), Expect = 2e-14, Method: Composition-based stats. Identities = 44/280 (16%), Positives = 103/280 (37%), Gaps = 27/280 (10%) Query 275 QEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDR 334 R L Y L R + L+ +V+ T R A+ + Sbjct 355 NGDRSRKEKLVEYGWRLPSALDNRPLKFEEFLERINQVIYVSATPGDWELERSEAVVEQI 414 Query 335 KNELAHLATHGPENPKLEMLEKILQRQFSSSN-SPRGIIFTRTRQSAHSLLLWLQQQQGL 393 L PK+ LE +++ R ++ T T++ A + +L +++ Sbjct 415 VRPTGLLDPVVEVRPKMNQLENLVKEIKEVKKRKERALVLTTTKRLAEEIADYLTERK-- 472 Query 394 QTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVV 453 IRA+ + + + ++ ++I++ ++G+++++V ++ EGLD+P ++V Sbjct 473 ----IRAKYM--------HSELDAIERAQLIRELREGSIDVIVGVNLLREGLDLPEVSLV 520 Query 454 VRYG-----LLTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEA-------LET 501 L + +++Q GRA + A + + + + I E E Sbjct 521 AIMDADKEGFLRSYQALIQTIGRAARNIHGKAILYADRITKAMEKAIQETQRRRKIQEEF 580 Query 502 LMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRE 541 + + + I +L ++ + + + E Sbjct 581 NKKHGITPKSIKKPVKELLAIEELDYVSVPEELPKGVKSE 620 >sp|Q24731|DDX1_DROVI ATP-dependent RNA helicase Ddx1 (Fragment) OS=Drosophila virilis OX=7244 GN=Ddx1 PE=3 SV=1 Length=400 Score = 79.1 bits (193), Expect = 2e-14, Method: Composition-based stats. Identities = 46/282 (16%), Positives = 89/282 (32%), Gaps = 52/282 (18%) Query 219 NLCHRRSQDPFGDLLKKLMDQI----HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGL 274 + R + + DL+++L QI D + + ++ +V K++E Sbjct 2 DEADRLLKQGYTDLIERLHKQIPKITSDGCRLQMIVCS--ATLHAFEVKKMAERLMHFPT 59 Query 275 QEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDR 334 + ++ + L+ H + V + + F Sbjct 60 WGDLKGEDAVPETVHHVVCMVDPHTDSSWQQLRQPIHTDGVHDHDNVHPTNQSPETFSQA 119 Query 335 KNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQ 394 L K E + + + R IIF RT+Q +L L Q+ G Sbjct 120 VKLL-----------KGEYCIRAIDQH----KMDRAIIFCRTKQDCDNLEQHLSQRGG-- 162 Query 395 TVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDI------- 447 L G +++++ ++ F+ + L+ T VA GLDI Sbjct 163 -QRFSCVCLHG--------DRKPQERKQNLEMFKRQEVKFLICTDVAARGLDITGLPFSK 213 Query 448 ------------PHCNVVVRYGLLTNEISMVQARGRARADQS 477 P+ V+ L ++ + V GR +S Sbjct 214 DLKYLSENTLNFPNLA-VINITLPDDKSNYVHRIGRVGRPES 254 >sp|Q6LT47|UVRB_PHOPR UvrABC system protein B OS=Photobacterium profundum (strain SS9) OX=298386 GN=uvrB PE=3 SV=1 Length=674 Score = 80.2 bits (196), Expect = 2e-14, Method: Composition-based stats. Identities = 39/238 (16%), Positives = 87/238 (37%), Gaps = 22/238 (9%) Query 307 QDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSN 366 Q Y K +I + + L + P +++ L ++ Sbjct 389 QTIYVSATPGKYEIEQSGNDIAEQVVRPTGLLDPIIEVRPVATQVDDLLSEIR--IREVK 446 Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 R ++ T T++ + L +L + +++ + L + + ++ E+I+ Sbjct 447 GERVLVTTLTKRMSEDLAEYLAEH------NVKVRYL--------HSDIDTVERVEIIRD 492 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLDIP ++V L +E S++Q GRA + A Sbjct 493 LRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLEGRAI 552 Query 482 VATEGSRELKRELINEALETLMEQAVAAVQK-MDQAEYQAKIRDLQQAALTKRAAQAA 538 + + I E +QA+ + + K+ D+ + ++ Sbjct 553 LYGDKITGSMERAIFETNRRREKQALHNKKNGITPQGLNKKVGDILELGKPSSRSRTN 610 Score = 34.4 bits (77), Expect = 4.0, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 20/66 (30%), Gaps = 7/66 (11%) Query 8 WEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEF 67 E + L + ++ TG+GKT A V ++ L Q E Sbjct 25 LEGLDSGLAHQTLLGV--TGSGKTFTIANVIAE-----SNRPTFIMAPNKTLAAQLYGEM 77 Query 68 RRMLDG 73 + Sbjct 78 KEFFPD 83 >sp|Q8CPZ0|UVRB_STAES UvrABC system protein B OS=Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200) OX=176280 GN=uvrB PE=3 SV=1 Length=661 Score = 80.2 bits (196), Expect = 2e-14, Method: Composition-based stats. Identities = 34/215 (16%), Positives = 80/215 (37%), Gaps = 27/215 (13%) Query 349 PKLEMLEKILQR-QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG 407 P ++ +L Q R ++ T T++ + L ++++ G Sbjct 428 PTENQIDDLLSEIQDRVDKDERVLVTTLTKKMSEDLTTYMKEA--------------GIK 473 Query 408 NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNE 462 + + + ++ E+I+ + GT + +V ++ EG+DIP ++VV L ++ Sbjct 474 VNYLHSEIKTLERIEIIRDLRMGTYDAIVGINLLREGIDIPEVSLVVILDADKEGFLRSD 533 Query 463 ISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQA----EY 518 S++Q GRA + + + ++ + ET + + + Sbjct 534 RSLIQTIGRAARNDKGEVIMYAD---KITDSMQYAIDETQRRREIQIAHNKEHGITPKTI 590 Query 519 QAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQ 553 KI D+ A + Q+ ++ + Q Sbjct 591 NKKIHDVISATVESDETNQQQQTELPKKMTKKERQ 625 >sp|O33395|UVRB_NEIMB UvrABC system protein B OS=Neisseria meningitidis serogroup B (strain ATCC BAA-335 / MC58) OX=122586 GN=uvrB PE=3 SV=3 Length=675 Score = 80.2 bits (196), Expect = 2e-14, Method: Composition-based stats. Identities = 30/167 (18%), Positives = 68/167 (41%), Gaps = 20/167 (12%) Query 365 SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI 424 R ++ T T++ A L + + +G + + ++ E+I Sbjct 449 EKGERVLVTTLTKRMAEQLTDYYSE--------------LGIKVRYLHSDIDTVERVEII 494 Query 425 QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVY 479 + + G ++LV ++ EGLDIP ++V L + S++Q GRA + + Sbjct 495 RDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAARNVNGV 554 Query 480 AFVATEGSRELKRELINEALETLMEQ-AVAAVQKMDQAEYQAKIRDL 525 A + + + + I+E +Q Q + + + +++D+ Sbjct 555 AILYADKITDSMKAAIDETERRREKQIKFNEEQGIVPQQIKKQVKDI 601 >sp|Q9H8H2|DDX31_HUMAN ATP-dependent DNA helicase DDX31 OS=Homo sapiens OX=9606 GN=DDX31 PE=1 SV=2 Length=851 Score = 80.6 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 41/267 (15%), Positives = 80/267 (30%), Gaps = 21/267 (8%) Query 312 REHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGI 371 ++ + L F ++ H+ P +L L + ++ + + Sbjct 456 KDKAVQEVCPPPAGDKLDSFAIPESLKQHVTVV-PSKLRLVCLAAFILQKCKFEEDQKMV 514 Query 372 IFTRTRQSAH----SLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF 427 +F + + L L G + M Q ++ V Q+F Sbjct 515 VFFSSCELVEFHYSLFLQTLLSSSGAPASGQLPSASMRLKFLRLHGGMEQEERTAVFQEF 574 Query 428 QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARAD--QSVYAFVAT 484 +L+ T VA GLD+P +V+Y ++ + GR AR S +A Sbjct 575 SHSRRGVLLCTDVAARGLDLPQVTWIVQYNAPSSPAEYIHRIGRTARIGCHGSSLLILAP 634 Query 485 EGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQR 544 + E + +L + + + RD K AQ+ + Sbjct 635 SEA---------EYVNSLASHKINVSEIKMEDILCVLTRD----DCFKGKRWGAQKSHAV 681 Query 545 QQFPVEHVQLLCINCMVAVGHGSDLRK 571 + + H S+ R Sbjct 682 GPQEIRERATVLQTVFEDYVHSSERRV 708 Score = 56.3 bits (134), Expect = 7e-07, Method: Composition-based stats. Identities = 41/199 (21%), Positives = 78/199 (39%), Gaps = 15/199 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-------AAYVAKRHLETVDGAKVVVLVNRVHL 59 Q + I LEG++ ++ TG+GKT A + + ++ DG +VLV L Sbjct 258 QKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDGPYALVLVPTREL 317 Query 60 VTQHGEEFRRMLDG--RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE 117 Q + +++L L G ++ L + ++LI T L + S + Sbjct 318 ALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIKSTK-- 375 Query 118 EHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASK 177 ++ + +V DE D + ++ L Q VL L+A+ G Sbjct 376 -NIHFSRLRWLVFDEADR-ILDLGFEKDITVILNAVNAECQKRQNVL-LSATLTEGVTRL 432 Query 178 LDGAINHVLQLCANLDTWC 196 D +++ + + + LD Sbjct 433 ADISLHDPVSI-SVLDKSH 450 >sp|Q944S1|RH22_ARATH DEAD-box ATP-dependent RNA helicase 22 OS=Arabidopsis thaliana OX=3702 GN=RH22 PE=2 SV=1 Length=581 Score = 80.2 bits (196), Expect = 2e-14, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 63/174 (36%), Gaps = 19/174 (11%) Query 368 PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF 427 R ++F T ++ ++ L++ + L ++ ++ F Sbjct 425 ERTMVFANTVEAVEAVADILEKASIQCYRYHKNHKL--------------DERANILADF 470 Query 428 QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEG 486 ++ T + V T A G+D+P+ + V++ ++ + + GR ARA Q T Sbjct 471 RE-TGGVFVCTDAAARGVDVPNVSHVIQADFASSAVDFLHRIGRTARAGQYGTV---TSL 526 Query 487 SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR 540 E R+L+ E + + ++ K++ + A R Sbjct 527 YTEANRDLVEAIREAVKMGQPVETAFSRKRGFRNKVKKRAFLKAEEAEEPQAVR 580 Score = 57.1 bits (136), Expect = 4e-07, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 42/134 (31%), Gaps = 17/134 (13%) Query 15 LEGKNIIIWLPTGAGKTR------------AAAY--VAKRHLETVDGAKV-VVLVNRVHL 59 L GK++I+ TG+GKT A V R + ++L V L Sbjct 115 LSGKDVIVAAETGSGKTHGYLAPIIDQLTNTALDSEVTNREERPFPLKNISLILCPNVML 174 Query 60 VTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 Q ++D + G+ R D+++ T L + Sbjct 175 CEQVVRMVNGLVDEDGNPLLRVEAVCGSQGWPD--RLPDIIVSTPAALLNNIEPKRNRRL 232 Query 120 VELTVFSLIVVDEC 133 L +V DE Sbjct 233 EFLRCVKYVVFDEA 246 >sp|Q7RZ35|DBP4_NEUCR ATP-dependent RNA helicase dbp-4 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=dbp-4 PE=3 SV=1 Length=823 Score = 80.6 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 36/218 (17%), Positives = 69/218 (32%), Gaps = 19/218 (9%) Query 275 QEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAE--RRLLALFD 332 + R+ + ++ DAL+ H L + + + + E A Sbjct 211 EADRIMDMGFQQAVDALVEHLPKSRQTLLFSATQSKRVSDLARLSLKDPEYVSVHEAAAS 270 Query 333 DRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQG 392 L P KL+ L L+ + I+F + + + ++ Q Sbjct 271 ATPVGLQQHYIVTPLPEKLDTLWGFLRTNLK----SKIIVFMSSGKQVRFVYESFKRMQP 326 Query 393 LQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNV 452 G Q + E+ +F + L AT V G+D P + Sbjct 327 ------------GIPLLHLHGRQKQIARLEITNRFTSAKYSCLFATDVVARGVDFPAVDW 374 Query 453 VVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRE 489 V++ + + + GR AR + A + + S E Sbjct 375 VIQVDCPEDADTYIHRVGRTARYESKGRAVLFLDPSEE 412 Score = 56.0 bits (133), Expect = 1e-06, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 10/135 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAY------VAKRHLETVDGAKVVVLVNRVHLV 60 Q I AL+G++I+ TG+GKT A + + DG +++ L Sbjct 84 QRAAIPLALKGQDILGAARTGSGKTL-AFLVPVLEKLYRARWTEYDGLGALIISPTRELA 142 Query 61 TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 Q E R++ L ++L+CT + L ++ Sbjct 143 VQIFEVLRKIGRNHSFSAGLVIGGKSLKEEAERLGRMNILVCTPGRMLQHL---DQTAGF 199 Query 121 ELTVFSLIVVDECHH 135 ++ ++V+DE Sbjct 200 DVDNLQMLVLDEADR 214 >sp|B7LVT0|RAPA_ESCF3 RNA polymerase-associated protein RapA OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 / IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 / CDC 0568-73) OX=585054 GN=rapA PE=3 SV=1 Length=968 Score = 80.6 bits (197), Expect = 3e-14, Method: Composition-based stats. Identities = 80/476 (17%), Positives = 152/476 (32%), Gaps = 44/476 (9%) Query 5 SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ 62 +Q + +++ G GKT A + + L + +V+++V L Q Sbjct 156 PHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVP-ETLQHQ 214 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 E R + R+ + + + L+IC+ L A S + EH+ Sbjct 215 WLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICS---LDFARRSKQRLEHLCE 271 Query 123 TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG 180 + L+VVDE HH +D + Q A+ +P VL LTA+P + G Sbjct 272 AEWDLLVVDEAHHLVWSEDAPSRE-----YQAIEQLAEHVPGVLLLTATP------EQLG 320 Query 181 AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI 240 +H +L LD + + + +P D L L + I Sbjct 321 MESHFARL-RLLDPNRFHDFAQFVEE--QKNYRPVADAVAMLLAGNKLSNDELNMLGEMI 377 Query 241 HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV 300 + P L Q + + + RV + R + Sbjct 378 GEQDIEPLLQAANSNSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIK 437 Query 301 DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG---PENPKLEMLEKI 357 L + AE R + + + +P++E L Sbjct 438 LPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGY 497 Query 358 LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ 417 L S + ++ +A L L++++G++ M+ Sbjct 498 LTSH----RSQKVLVICAKAATALQLEQVLREREGIRAAVFH-------------EGMSI 540 Query 418 RDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 ++ F +D +L+ + + EG + + +V + L N + Q GR Sbjct 541 IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR 596 >sp|Q3E9C3|RH58_ARATH DEAD-box ATP-dependent RNA helicase 58, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RH58 PE=2 SV=1 Length=472 Score = 79.5 bits (194), Expect = 3e-14, Method: Composition-based stats. Identities = 29/162 (18%), Positives = 60/162 (37%), Gaps = 19/162 (12%) Query 355 EKILQRQFSSSNSPRGIIFT-----RTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNS 409 ++L S IIF +++++ + L + + ++L+ G Sbjct 316 HQVLLALLESDAPESAIIFVGEQSEKSKKAGNDPSTTLLMEFLKTSYKGSLEILLLEG-- 373 Query 410 SQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQAR 469 M + + + + G LLV+T +A G+D+P + + L + Sbjct 374 ----DMNFNSRAASLTEIRQGGGFLLVSTDIAARGIDLPETTHIFNFDLPQTVTDYLHRA 429 Query 470 GRARA-----DQSVYAFVATEGSRELKRELINEAL---ETLM 503 GRA + + A + T R + + NE + E +M Sbjct 430 GRAGRKPFSDRKCIVANLITSEERFVLQRYENELMFSCEEMM 471 Score = 53.3 bits (126), Expect = 5e-06, Method: Composition-based stats. Identities = 28/134 (21%), Positives = 48/134 (36%), Gaps = 12/134 (9%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-KVVVLVNRVHLVTQHGE 65 Q E + G++ I+ TG+GKT + + + + V++V L Q + Sbjct 103 QREALPTLFTGRDCILHAQTGSGKTLTYLLLIFSLINPQRSSVQAVIVVPTRELGMQVTK 162 Query 66 EFRRML-------DGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEE 118 R + G + L G R A +L+ T L L E+ Sbjct 163 VARMLAAKSEIDVKGCTVMALLDGGTLRRHKSWLKAEPPAILVATVASLCHML---EKHI 219 Query 119 HVELTVFSLIVVDE 132 + ++VVDE Sbjct 220 F-RIDSVRVLVVDE 232 >sp|Q09916|HAS1_SCHPO ATP-dependent RNA helicase has1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=has1 PE=1 SV=1 Length=578 Score = 79.8 bits (195), Expect = 3e-14, Method: Composition-based stats. Identities = 23/123 (19%), Positives = 43/123 (35%), Gaps = 14/123 (11%) Query 357 ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT 416 +L + + I+F + S + L +D+ L G Sbjct 326 LLFSFLKRNLKKKVIVFMSSCASVKYMAELL------NYIDLPVLDLHG--------KQK 371 Query 417 QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQ 476 Q+ + +F + +L+ T+VA GLDIP + +V+Y + + GR Sbjct 372 QQRRTNTFFEFCNAEKGILLCTNVAARGLDIPAVDWIVQYDPPDDPRDYIHRVGRTARGT 431 Query 477 SVY 479 Sbjct 432 KGT 434 Score = 52.5 bits (124), Expect = 9e-06, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 50/136 (37%), Gaps = 11/136 (8%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRH------LETVDGAKVVVLVNRVHLV 60 Q I P L G++++ TG+GKT A + + +G V+++ L Sbjct 116 QKRSIPPLLAGRDVLGAAKTGSGKTL-AFLIPTIEMLYALKFKPRNGTGVIIISPTRELA 174 Query 61 TQHGEEFRRMLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119 Q + +L + G RA L + +LL+ T L L + + Sbjct 175 LQIFGVAKELLKYHHQTFGIVIGGANRRAEADKLVKGVNLLVATPGRLLDHLQNTKGFVF 234 Query 120 VELTVFSLIVVDECHH 135 L +V+DE Sbjct 235 RNLRS---LVIDEADR 247 >sp|A4R8B5|HAS1_PYRO7 ATP-dependent RNA helicase HAS1 OS=Pyricularia oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 GN=HAS1 PE=3 SV=2 Length=587 Score = 79.8 bits (195), Expect = 3e-14, Method: Composition-based stats. Identities = 39/259 (15%), Positives = 78/259 (30%), Gaps = 44/259 (17%) Query 253 FGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHR 312 G + KLS+ L R+ L + + + +D + + Sbjct 219 IGGANRRAEAEKLSKGVNLLIATPGRL--LDHLQNTPFVFKNLRSLVIDEADRILEIGFE 276 Query 313 EHVTKTQILCAERRLLALFDD----RKNELAHLATHG----------PENPKLEMLEK-- 356 + + + + + R LF + +LA ++ E +E LE+ Sbjct 277 DEMRQIIKILPKERQSMLFSATQTTKVEDLARVSLRPGPLYLNVDEEKEYSTVEGLEQGY 336 Query 357 ----------ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGA 406 +L + I+F + S L I Q+L Sbjct 337 VVCEADKRFILLFSFLQKMKKKKIIVFFSSCNSVKYYAELLN--------YIDCQVL--- 385 Query 407 GNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMV 466 Q+ + +F + L+ T VA GLDIP + +V++ + + Sbjct 386 ---DLHGKQKQQKRTNTFFEFCNADRGTLICTDVAARGLDIPAVDWIVQFDPPDDPRDYI 442 Query 467 QARGRARAD--QSVYAFVA 483 GR + + + Sbjct 443 HRVGRTARGTNKKGRSLMF 461 Score = 51.0 bits (120), Expect = 3e-05, Method: Composition-based stats. Identities = 30/127 (24%), Positives = 46/127 (36%), Gaps = 10/127 (8%) Query 15 LEGKNIIIWLPTGAGKT---RAAAYVAKRHLETVD--GAKVVVLVNRVHLVTQHGEEFRR 69 L GK+++ TG+GKT A R L+ G V+V+ L Q R Sbjct 147 LAGKDVLGAAKTGSGKTLAFLIPAVEMLRSLKFKPRNGTGVIVVSPTRELALQIFGVARD 206 Query 70 MLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLI 128 ++ + G RA L++ +LLI T L L + + Sbjct 207 LMKHHSQTYGIVIGGANRRAEAEKLSKGVNLLIATPGRLLDHLQNTP----FVFKNLRSL 262 Query 129 VVDECHH 135 V+DE Sbjct 263 VIDEADR 269 >sp|Q97LQ2|UVRB_CLOAB UvrABC system protein B OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / IAM 19013 / LMG 5710 / NBRC 13948 / NRRL B-527 / VKM B-1787 / 2291 / W) OX=272562 GN=uvrB PE=3 SV=1 Length=666 Score = 80.2 bits (196), Expect = 3e-14, Method: Composition-based stats. Identities = 31/193 (16%), Positives = 72/193 (37%), Gaps = 26/193 (13%) Query 365 SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI 424 N R ++ T T++ A L +L+ +G + + + ++ ++I Sbjct 442 QNGFRILVTTLTKKMAEDLTDYLKD--------------LGIKTTYMHSDIDTLERMKII 487 Query 425 QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVY 479 + + G ++LV ++ EGLDIP +V L +E S++Q GRA + Sbjct 488 KDVRTGEFDVLVGINLLREGLDIPEVALVAILDADKEGFLRSERSLIQTIGRAARNSESR 547 Query 480 AFVATEGSRELKRELINEA-------LETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTK 532 + + + + I+E +E + + I ++ + Sbjct 548 VIMYGDKITDAMGKAISETKRRRKIQIEYNEKNGIKPTTIKKAVRDVIGISEVAEGKTEY 607 Query 533 RAAQAAQRENQRQ 545 ++ A + + + Sbjct 608 KSMDEAVKADNKN 620 >sp|A7MIC1|RAPA_CROS8 RNA polymerase-associated protein RapA OS=Cronobacter sakazakii (strain ATCC BAA-894) OX=290339 GN=rapA PE=3 SV=1 Length=968 Score = 80.6 bits (197), Expect = 3e-14, Method: Composition-based stats. Identities = 77/476 (16%), Positives = 152/476 (32%), Gaps = 44/476 (9%) Query 5 SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ 62 +Q + +++ G GKT A + + L +V+++V L Q Sbjct 156 PHQLNIANDVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLAGAAERVLIVVP-ETLQHQ 214 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 E R + R+++ + + L+IC+ L + + EH+ Sbjct 215 WLVEMLRRFNLRFSLFDDERYAEAQHESDNPFDTEQLVICS---LDFVRRNKQRLEHLCD 271 Query 123 TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG 180 + L+VVDE HH +D + Q A+ +P VL LTA+P + G Sbjct 272 AEWDLLVVDEAHHLVWSEDAPSRE-----YQAIEQLAERVPGVLLLTATP------EQLG 320 Query 181 AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI 240 +H +L LD + + + +P + L L + I Sbjct 321 MESHFARL-RLLDPNRFHDFAQFVEE--QQNYRPVADAVALLLAGTHLSDEQLNTLSELI 377 Query 241 HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV 300 + P L + + + + + RV + R + Sbjct 378 GEQDIEPLLQTANSDRDGAESARQELVSMLMDRHGTSRVLFRNTRNGVKGFPQRELHTIK 437 Query 301 DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG---PENPKLEMLEKI 357 L + AE R + + G +P++E L Sbjct 438 LPLPTQYQTAIKVSGIMGARKSAEERARDMLYPEQIYQEFEGDSGTWWNFDPRVEWLMGY 497 Query 358 LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ 417 L S + ++ +A L L++++G++ M+ Sbjct 498 LTSH----RSQKVLVICAKAATALQLEQVLREREGIRAAVFH-------------EGMSI 540 Query 418 RDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 ++ F +D +L+ + + EG + + +V + L N + Q GR Sbjct 541 IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASQLVMFDLPFNPDLLEQRIGR 596 >sp|Q7S2N9|HAS1_NEUCR ATP-dependent RNA helicase has-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=has-1 PE=3 SV=1 Length=578 Score = 79.8 bits (195), Expect = 3e-14, Method: Composition-based stats. Identities = 23/122 (19%), Positives = 42/122 (34%), Gaps = 14/122 (11%) Query 357 ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT 416 +L + I+F + S LQ +D++ L G Sbjct 343 LLFSFLKKMQKKKVIVFFSSCNSVKYYSELLQ------YIDLQVLDLHG--------KQK 388 Query 417 QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQ 476 Q+ + +F + L+ T VA GLDIP + +V++ + + GR Sbjct 389 QQKRTNTFFEFCNAKQGTLICTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGN 448 Query 477 SV 478 + Sbjct 449 NT 450 Score = 49.0 bits (115), Expect = 1e-04, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 42/127 (33%), Gaps = 10/127 (8%) Query 15 LEGKNIIIWLPTGAGKT---RAAAYVAKRHLETVD--GAKVVVLVNRVHLVTQHGEEFRR 69 L GK+++ TG+GKT A L G +V+ L Q R Sbjct 142 LAGKDVLGAAKTGSGKTLAFLIPAIEMLSSLRFKPRNGTGAIVVTPTRELALQIFGVARE 201 Query 70 MLDGRWTV-TTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLI 128 ++ + G RA L + +LLI T L L + + Sbjct 202 LMKNHSQTYGVVIGGANRRAEAEKLGKGVNLLIATPGRLLDHLQNTP----FVFKNMRSL 257 Query 129 VVDECHH 135 ++DE Sbjct 258 IIDEADR 264 >sp|F1LPQ2|ASCC3_RAT Activating signal cointegrator 1 complex subunit 3 OS=Rattus norvegicus OX=10116 GN=Ascc3 PE=3 SV=1 Length=2197 Score = 80.6 bits (197), Expect = 3e-14, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 69/164 (42%), Gaps = 18/164 (11%) Query 18 KNIIIWLPTGAGKTRAAAYVAKRHLET--------VDGAKVVVLVNRVHLVTQHGEEFRR 69 +N++I PTGAGKT A + + K+V + L + F + Sbjct 494 ENMLICAPTGAGKTNIAMLTVLHEIRQHFHQGVLKKNEFKIVYVAPMKALAAEMTNYFSK 553 Query 70 MLDG-RWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFS-L 127 L+ V L+GDM +L+ T E + + + V L+ L Sbjct 554 RLEPLGIVVKELTGDMQLS---KSEILRTQMLVTTPEKW--DVVTRKSVGDVALSQIVKL 608 Query 128 IVVDECH--HTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS 169 +++DE H H + V I+++ L ++ Q + ++LGL+A+ Sbjct 609 LILDEVHLLHEDRGPVLESIVARTLRQ-VESTQSMIRILGLSAT 651 Score = 71.0 bits (172), Expect = 3e-11, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 60/152 (39%), Gaps = 8/152 (5%) Query 19 NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEE--FRRMLDGRWT 76 N+++ PTG+GKT AA R +K V + LV + ++ R Sbjct 1345 NVLLGAPTGSGKTVAAELAIFRVFNKYPTSKAVYIAPLKALVRERMDDWKIRIEEKLGKK 1404 Query 77 VTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECH-H 135 V L+GD+ P DL++ T E S + +V+ +++++DE H Sbjct 1405 VIELTGDVTPDM---KSIAKADLIVTTPEKWDGVSRSWQNRSYVQ--QVNILIIDEIHLL 1459 Query 136 THKDTVYNVIMSQYLELKLQRAQPLPQVLGLT 167 + ++ + +++GL+ Sbjct 1460 GEERGPVLEVIVSRTNFISSHTEKPVRIVGLS 1491 Score = 38.6 bits (88), Expect = 0.23, Method: Composition-based stats. Identities = 36/196 (18%), Positives = 69/196 (35%), Gaps = 25/196 (13%) Query 321 LCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSA 380 + + K TH P+ P L + E++L I F T + Sbjct 1530 FPGQHYCPRMASMNKPAFQESHTHCPDRPCLLLPERMLSSM----TKLELIAFLATEEDP 1585 Query 381 HSLLLWLQQQQGLQTVDIRAQLL---IGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA 437 L +Q+ +R L + G + +RD++ V + F + + +L+A Sbjct 1586 KQWLNMDEQEMENIIATVRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLIA 1645 Query 438 TSVAEEGLDIPHCNVVV-----------RY-GLLTNEISMVQARGRARA----DQSVYAF 481 TS G++ P V++ RY ++Q GRA DQ Sbjct 1646 TSTLAWGVNFPAHLVIIKGTEYYDGKTRRYVDFPIT--DVLQMMGRAGRPQFDDQGKAVI 1703 Query 482 VATEGSRELKRELINE 497 + + ++ ++ + E Sbjct 1704 LVHDIKKDFYKKFLYE 1719 >sp|Q3A8D0|UVRB_SYNC1 UvrABC system protein B OS=Syntrophotalea carbinolica (strain DSM 2380 / NBRC 103641 / GraBd1) OX=338963 GN=uvrB PE=3 SV=1 Length=667 Score = 80.2 bits (196), Expect = 3e-14, Method: Composition-based stats. Identities = 32/199 (16%), Positives = 78/199 (39%), Gaps = 21/199 (11%) Query 304 AALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFS 363 +Q Y ++ A+ ++ L P +++ L ++ + Sbjct 384 KGIQTIYVSATPADYELRKADGVVVEQIIRPTGLLDPPIDVRPAKDQVDDLIHEIR--LT 441 Query 364 SSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEV 423 + R ++ T T++ A L +L + +G + + ++ ++ Sbjct 442 IKQNERVLVTTLTKRMAEELTGYLGE--------------LGIKVRYLHSDIDTVERMQI 487 Query 424 IQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSV 478 +++ ++G ++LV ++ EGLDIP ++V L +E S++Q GRA + + Sbjct 488 LRELREGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTCGRAARNVAG 547 Query 479 YAFVATEGSRELKRELINE 497 + + R ++E Sbjct 548 RVIMYADRITRSMRACLDE 566 >sp|Q6BXG0|DBP4_DEBHA ATP-dependent RNA helicase DBP4 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DBP4 PE=3 SV=2 Length=766 Score = 80.2 bits (196), Expect = 3e-14, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 57/178 (32%), Gaps = 20/178 (11%) Query 331 FDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQ 390 L P + KL++L ++ + ++F + + + Sbjct 259 LSATPESLEQYYIKIPLDEKLDVLWSFIKSHLK----SKILVFFSSSKQVQYAYETFRTL 314 Query 391 QGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHC 450 Q G Q + E KF L AT + GLD P Sbjct 315 QP------------GISLLKLYGRHKQTSRMETTMKFSQAQHACLFATDIVARGLDFPAI 362 Query 451 NVVVRYGLLTNEISMVQARGRA----RADQSVYAFVATEGSRELKRELINEALETLME 504 + VV+ + + V GRA RA +S+ + +E + LKR N+ M Sbjct 363 DWVVQIDCPEDAATYVHRVGRAARFGRAGKSLMMLLPSEENGMLKRLNNNKIELKFMN 420 Score = 53.3 bits (126), Expect = 8e-06, Method: Composition-based stats. Identities = 23/136 (17%), Positives = 48/136 (35%), Gaps = 10/136 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAY------VAKRHLETVDGAKVVVLVNRVHLV 60 Q + I +L+G++++ TG+GKT A + + + DG +++ L Sbjct 73 QKKTIPISLKGEDVMGTAKTGSGKTL-AFLIPTIESLIRNKITEYDGLAALIISPTRELA 131 Query 61 TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 Q E ++ L ++L+ T + L + Sbjct 132 VQIFEVLVKIGKHNNFSAGLVTGGKDVKYEKERVSKMNILVGTPGRISQHLNESVG---M 188 Query 121 ELTVFSLIVVDECHHT 136 E + ++V+DE Sbjct 189 ETSNLQVLVLDEADRC 204 >sp|Q4WM60|DBP4_ASPFU ATP-dependent RNA helicase dbp4 OS=Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293) OX=330879 GN=dbp4 PE=3 SV=1 Length=787 Score = 80.2 bits (196), Expect = 3e-14, Method: Composition-based stats. Identities = 43/254 (17%), Positives = 85/254 (33%), Gaps = 21/254 (8%) Query 275 QEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDR 334 + R+ L ++ DA++ H + L + L + Sbjct 201 EADRILDLGFQQTVDAIIGH-LPKERQTLLFSATQTKKVSDLARLSLQDPEYVAVHETAS 259 Query 335 KNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQ 394 + L H P + L IL S+ + ++F + + + + Q Sbjct 260 SATPSKLQQHYVITPLPQKL-DILWSFIRSNLKSKTMVFLSSGKQVRFVYESFRHLQP-- 316 Query 395 TVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV 454 G Q + +++ +F +L +T VA GLD P + V+ Sbjct 317 ----------GIPLMHLHGRQKQGGRLDIVTRFSQSKHCVLFSTDVAARGLDFPAVDWVI 366 Query 455 RYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM 513 + + + + GR AR ++ A + + S E L+ L ++ V + Sbjct 367 QLDCPEDADTYIHRVGRTARYEREGRAVLFLDPSEE------EGMLKRLEQKKVPIEKIN 420 Query 514 DQAEYQAKIRDLQQ 527 +A Q I+D Q Sbjct 421 IKANKQQSIKDQLQ 434 Score = 54.4 bits (129), Expect = 3e-06, Method: Composition-based stats. Identities = 28/135 (21%), Positives = 48/135 (36%), Gaps = 10/135 (7%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAY--VAKRHLETV----DGAKVVVLVNRVHLV 60 Q I AL+G++I+ TG+GKT A V + DG ++L L Sbjct 74 QSRAISHALKGRDILGAAKTGSGKTL-AFLVPVLENLYRKQWAEHDGLGALILSPTRELA 132 Query 61 TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV 120 Q E R++ L ++L+CT + L ++ Sbjct 133 IQIFEVLRKIGRYHTFSAGLVIGGKSLKEEQERLGRMNILVCTPGRMLQHL---DQTALF 189 Query 121 ELTVFSLIVVDECHH 135 + ++V+DE Sbjct 190 DTYNLQMLVLDEADR 204 >sp|Q6FN65|ROK1_CANGA ATP-dependent RNA helicase ROK1 OS=Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=ROK1 PE=3 SV=1 Length=565 Score = 79.8 bits (195), Expect = 3e-14, Method: Composition-based stats. Identities = 57/340 (17%), Positives = 115/340 (34%), Gaps = 32/340 (9%) Query 143 NVIMSQYLELKLQRAQPLPQVL---GLTASPGTGGASKLDGAINHVLQL--CANLDTWCI 197 N+I + + E + + +P L L A TG L I + Q+ N Sbjct 138 NLIENHFTEPTPIQCEAIPLCLNGRDLLACAPTGSGKTLAFLIPLLQQIIEEKNFSGVKG 197 Query 198 MSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPF------GDLLKKLMDQ-IHDHLEMPELS 250 + + + K + + P L KL ++ I D +S Sbjct 198 LIISPTKELATQIFNECVKLSKRIYLDKKRPLQVAILSKSLGAKLRNKVISDKKYDLIIS 257 Query 251 RKFGT-QMYEQQVVKLSEAAALAGLQEQRVY-ALHLRRYNDALLIHDTVRAVDALAALQD 308 + + + + LS L + +++ + + +D L ++ + Sbjct 258 TPLRLIDVVKNEALDLSNVKHLIFDEADKLFDKTFIEQTDDILNSCTDPSMRKSMFSATI 317 Query 309 FYHREHVTKTQILCAERRLLALFDDRKNELAH-LATHGPENPKLEMLEKILQRQFSSSNS 367 E + + R ++ + + L G E KL + +++Q+ Sbjct 318 PSSVEETANSIMNDPVRVIIGHKEAANTNIEQKLIFCGNEEGKLIAIRQLVQQ---GEFK 374 Query 368 PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF 427 P IIF + A +L L I ++ T ++++I++F Sbjct 375 PPIIIFLESIARAKAL------YHELMYDRINVDVI--------HAERTAIQREKIIERF 420 Query 428 QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 + G L L+ T V G+D N+V+ Y + T + V Sbjct 421 KTGELWCLICTDVLARGIDFKGVNLVINYDVPTTAQAYVH 460 Score = 58.3 bits (139), Expect = 2e-07, Method: Composition-based stats. Identities = 30/138 (22%), Positives = 56/138 (41%), Gaps = 15/138 (11%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKT---RAAAYVAKRHLETVDGAKVVVLVNRVHLVTQH 63 Q E I L G++++ PTG+GKT + G K +++ L TQ Sbjct 151 QCEAIPLCLNGRDLLACAPTGSGKTLAFLIPLLQQIIEEKNFSGVKGLIISPTKELATQI 210 Query 64 GEEFRRMLDGRW-------TVTTLSGDMGPRAGFGHLA-RCHDLLICTAELLQMALTSPE 115 E ++ + V LS +G + ++ + +DL+I T L + Sbjct 211 FNECVKLSKRIYLDKKRPLQVAILSKSLGAKLRNKVISDKKYDLIISTPLRLIDVV---- 266 Query 116 EEEHVELTVFSLIVVDEC 133 + E ++L+ ++ DE Sbjct 267 KNEALDLSNVKHLIFDEA 284 >sp|Q56998|UVRB_ZYMMO UvrABC system protein B OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) OX=264203 GN=uvrB PE=3 SV=2 Length=740 Score = 80.2 bits (196), Expect = 3e-14, Method: Composition-based stats. Identities = 29/163 (18%), Positives = 65/163 (40%), Gaps = 20/163 (12%) Query 369 RGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ 428 R ++ T T++ A L ++ + G + + ++ E+I+ + Sbjct 478 RSLVTTLTKRMAEDLTEYMYEA--------------GLKVRYMHSDVETIERIELIRDLR 523 Query 429 DGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAFVA 483 G ++L+ ++ EGLDIP C +V L +E S++Q GRA + + Sbjct 524 LGVYDVLIGINLLREGLDIPECGLVAVLDADKEGFLRSETSLIQTIGRAARNAEGRVILY 583 Query 484 TEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDL 525 + + + R + + + A + A + ++ D+ Sbjct 584 GDKITGSMARAMAETERRRIKQIAWNKAHNITPATVKRQVDDI 626 Score = 36.7 bits (83), Expect = 0.82, Method: Composition-based stats. Identities = 13/47 (28%), Positives = 19/47 (40%), Gaps = 5/47 (11%) Query 26 TGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLD 72 TG+GKT A V ++ ++L L Q EF+R Sbjct 71 TGSGKTFTMAKVIEKLQRPS-----LILAPNKILAAQLYGEFKRFFP 112 >sp|A9WT85|UVRB_RENSM UvrABC system protein B OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / JCM 11484 / NBRC 15589 / NCIMB 2235) OX=288705 GN=uvrB PE=3 SV=1 Length=693 Score = 79.8 bits (195), Expect = 3e-14, Method: Composition-based stats. Identities = 34/203 (17%), Positives = 74/203 (36%), Gaps = 27/203 (13%) Query 365 SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI 424 R ++ T T++ A L +L G + + + E++ Sbjct 451 ERDERVLVTTLTKRMAEDLTEYLLG--------------HGVKVQYLHSDVDTLRRVELL 496 Query 425 QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVY 479 ++ + G ++LV ++ EGLD+P ++V L + S++Q GRA + S Sbjct 497 RELRLGVFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSATSLIQTIGRAARNVSGE 556 Query 480 AFVATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRA---- 534 + + + + + + ++ A +D + +I D+ + + A Sbjct 557 VHMYADKITDSMAKAIDETNRRRAIQVAYNTEHGVDPTPLRKRIADITDSLAREDADTKS 616 Query 535 ---AQAAQRENQRQQFPVEHVQL 554 + R + PV H L Sbjct 617 LLESAGKGRSRGKAPVPVRHDGL 639 >sp|A2QA23|DBP6_ASPNC ATP-dependent RNA helicase dbp6 OS=Aspergillus niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) OX=425011 GN=dbp6 PE=3 SV=1 Length=593 Score = 79.8 bits (195), Expect = 3e-14, Method: Composition-based stats. Identities = 33/153 (22%), Positives = 60/153 (39%), Gaps = 13/153 (8%) Query 329 ALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQ 388 F H + G + K L ++L + ++F T+ S + L Sbjct 382 EQFTLPPTLEEHTVSVGDGSQKPLYLLRLLLSHIKL--ETKILVF--TKSSESASRLARL 437 Query 389 QQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIP 448 ++ R +I + SS S ++ + ++ G +++++AT A GLD+ Sbjct 438 LALLEPSLSDRIGTIIKSNKSSAS--------RKTLTAYRRGKISVIIATDRASRGLDLR 489 Query 449 HCNVVVRYGLLTNEISMVQARGR-ARADQSVYA 480 VV Y + + + V GR ARA Q A Sbjct 490 SLTHVVNYDVPASITTYVHRVGRTARAGQKGSA 522 Score = 51.3 bits (121), Expect = 2e-05, Method: Composition-based stats. Identities = 25/127 (20%), Positives = 44/127 (35%), Gaps = 14/127 (11%) Query 20 IIIWLPTGAGKTRAAAYVAKRHLETVDGAKV--VVLVNRVHLVTQHGEEFR-RMLDGRWT 76 + I TG+GKT + L+ + ++ +++V LV Q E Sbjct 166 LCISAATGSGKTLSYVLPLVTALKPLPAPRLRGLIVVPTRELVKQAREACELCAAGSGLR 225 Query 77 VTTLSGDMGPRAGFGHLARCH--------DLLICTAELLQMALTSPEEEEHVELTVFSLI 128 V + G++ + + D+LICT L L + L + Sbjct 226 VASAVGNVAIKDEQRESLPGYVHRSEPNVDILICTPGRLVDHLRYTKG---FTLKNLEWL 282 Query 129 VVDECHH 135 V+DE Sbjct 283 VIDEADR 289 >sp|Q75AE1|ROK1_EREGS ATP-dependent RNA helicase ROK1 OS=Eremothecium gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=ROK1 PE=3 SV=1 Length=569 Score = 79.5 bits (194), Expect = 3e-14, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 58/156 (37%), Gaps = 18/156 (12%) Query 313 EHVTKTQILCAERRLLALFDDRKNELAH-LATHGPENPKLEMLEKILQRQFSSSNSPRGI 371 E + ++ + R ++ + + L G E KL + +++Q P I Sbjct 322 EELAQSIMTDPVRVIIGHKEAANTNIEQKLVFCGNEEGKLVAIRQLIQE---GMFRPPVI 378 Query 372 IFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGT 431 IF + A +L L TQ ++++I++F+ G Sbjct 379 IFLESITRAKAL--------------FHELLYDKLNVDVIHAERTQVQREKIIERFKSGD 424 Query 432 LNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 L L+ T V G+D N+V+ Y + + + V Sbjct 425 LWCLICTDVLARGIDFKGINLVINYDVPRSAQAYVH 460 Score = 55.6 bits (132), Expect = 1e-06, Method: Composition-based stats. Identities = 29/140 (21%), Positives = 57/140 (41%), Gaps = 18/140 (13%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA-----KVVVLVNRVHLVT 61 Q E I +L+ ++I+ PTG+GKT A + D A K +++ L Sbjct 150 QCEAIPISLQNRDIVACAPTGSGKTL-AFLIPLLQQVISDKAVGTGVKGLIISPTKELAN 208 Query 62 QHGEEFRRML-------DGRWTVTTLSGDMGPRAGFGHLA-RCHDLLICTAELLQMALTS 113 Q +E ++ +V LS + + ++ + +D++I T L + S Sbjct 209 QIFDECSKLAQRIFLEKKRPLSVALLSKSLAAKLKNQIVSDKKYDIIISTPLRLIDIVKS 268 Query 114 PEEEEHVELTVFSLIVVDEC 133 ++L+ ++ DE Sbjct 269 ES----LDLSAVKYLIFDEA 284 >sp|Q03SM9|UVRB_LEVBA UvrABC system protein B OS=Levilactobacillus brevis (strain ATCC 367 / BCRC 12310 / CIP 105137 / JCM 1170 / LMG 11437 / NCIMB 947 / NCTC 947) OX=387344 GN=uvrB PE=3 SV=1 Length=668 Score = 79.8 bits (195), Expect = 3e-14, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 60/157 (38%), Gaps = 22/157 (14%) Query 365 SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI 424 + R + T T++ A L +L+ +G + + + ++ E++ Sbjct 448 EKNERTFVTTLTKKMAEDLTDYLKD--------------LGIKVAYLHSDIKTLERTEIM 493 Query 425 QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVY 479 + + G ++LV ++ EG+DIP ++V L NE S++Q GRA + Sbjct 494 RDLRLGKYDVLVGINLLREGIDIPEVSLVAILDADKEGFLRNERSLIQTIGRAARNSHGS 553 Query 480 AFVATEGSRELKRELINEALETLMEQAVAAVQKMDQA 516 + + + + ET + + + Sbjct 554 VIMYAD---SVTDSMQAAMDETARRRQIQIAYNKEHG 587 >sp|Q7UA24|UVRB_PARMW UvrABC system protein B OS=Parasynechococcus marenigrum (strain WH8102) OX=84588 GN=uvrB PE=3 SV=1 Length=677 Score = 79.8 bits (195), Expect = 3e-14, Method: Composition-based stats. Identities = 31/148 (21%), Positives = 62/148 (42%), Gaps = 23/148 (16%) Query 363 SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE 422 +S R ++ T T++ A L +L + + +R + L + + ++ E Sbjct 440 RASKQQRVLVTTLTKRMAEDLTDYLAENE------VRVRYL--------HSEIHSIERIE 485 Query 423 VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQS 477 +IQ + G ++LV ++ EGLD+P ++V L E S++Q GRA Sbjct 486 IIQDLRLGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAARHVE 545 Query 478 VYAFVATEGSRELKRELINEALETLMEQ 505 A + + E + +A+ + Sbjct 546 GVALLYADN----MTESMAKAISETERR 569 >sp|A3N031|UVRB_ACTP2 UvrABC system protein B OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) OX=416269 GN=uvrB PE=3 SV=1 Length=673 Score = 79.8 bits (195), Expect = 3e-14, Method: Composition-based stats. Identities = 32/179 (18%), Positives = 68/179 (38%), Gaps = 20/179 (11%) Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 R +I T T++ A L +L + G + + ++ E+I Sbjct 449 DERVLITTLTKKMAEDLTDYLDE--------------HGVRVRYLHSDIDTVERVEIIHD 494 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L +E S++Q GRA + + A Sbjct 495 LRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAI 554 Query 482 VATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQ 539 + + + +++ + +Q + K+ +L T + + Q Sbjct 555 LYGDRITNSMQKAITETERRREKQQKYNEEHGITPQALNKKVGELLDIGQTDKPKRGKQ 613 >sp|B7KC96|UVRB_GLOC7 UvrABC system protein B OS=Gloeothece citriformis (strain PCC 7424) OX=65393 GN=uvrB PE=3 SV=1 Length=665 Score = 79.8 bits (195), Expect = 3e-14, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 60/157 (38%), Gaps = 22/157 (14%) Query 365 SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI 424 R +I T T++ A L + Q++ G + ++ ++ E++ Sbjct 442 KRKERVLITTLTKRMAEDLTEYFQER--------------GVKVQYLHSEISSIERIEIL 487 Query 425 QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVY 479 Q ++G ++L+ ++ EGLD+P ++V L E S++Q GRA Sbjct 488 QNLREGEFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAARHIQGQ 547 Query 480 AFVATEGSRELKRELINEALETLMEQAVAAVQKMDQA 516 A + + L +I ET + + Sbjct 548 AILYADN---LTDSMIKAMEETERRRNIQMAHNKRHG 581 Score = 35.2 bits (79), Expect = 2.7, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 23/66 (35%), Gaps = 9/66 (14%) Query 8 WEVIMPALEGKNIIIWLPTGAGKTR-AAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEE 66 I + ++ TG GKT AA + K G +VL + L Q E Sbjct 24 VNSIEKGNRFQTLLGA--TGTGKTFTIAATIEKI------GKPTLVLAHNKTLAAQLCNE 75 Query 67 FRRMLD 72 R+ Sbjct 76 LRQFFP 81 >sp|P0CR09|SPB4_CRYNB ATP-dependent rRNA helicase SPB4 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=SPB4 PE=3 SV=1 Length=748 Score = 79.8 bits (195), Expect = 3e-14, Method: Composition-based stats. Identities = 36/204 (18%), Positives = 68/204 (33%), Gaps = 24/204 (12%) Query 316 TKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTR 375 K ERR + H K L ++L + + + I++ Sbjct 268 RKDGEEPKERRTPMALQNTYLVCRHAE-------KTLQLIRLLLCESTKHERSKFIVYFS 320 Query 376 TRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN-- 433 T + L + L + +S + + ++ + F + Sbjct 321 TCAAVDYFYRILSRLPSLSKFHL----------TSFHGELPPKIRETALSTFTSHPSSHL 370 Query 434 ---LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYA-FVATEGSR 488 +L+ T VA G+D +VV++Y T+ + GR ARA + A + +G Sbjct 371 SPAVLLCTDVAARGVDFLDIDVVIQYDAPTDPKTFSHRAGRTARAGRRGKAVVLLGKGRE 430 Query 489 ELKRELINEALETLMEQAVAAVQK 512 E A LM++ Q+ Sbjct 431 EDYVGTFQSANAELMKRKRQKAQR 454 Score = 52.5 bits (124), Expect = 1e-05, Method: Composition-based stats. Identities = 33/228 (14%), Positives = 69/228 (30%), Gaps = 45/228 (20%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAK-----VVVLVNRVHLV 60 Q I A++ ++ ++ TG+GKT A V +R + K +V+ L Sbjct 42 QAGTIPRAVKNQDCVVEAVTGSGKTLAFTIPVLERLSRREEPYKKGEIAAIVVAPTRELA 101 Query 61 TQHGEEFRRML-----------------------------------DGRWTVTTLSGDMG 85 TQ F L + + L Sbjct 102 TQIHAVFHHFLSSLIPPESEEETGDVEAHAPPFASSSRSPSPQTPDKPLFPLPMLVTSGT 161 Query 86 PRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVI 145 P + +LI T L L +P V ++ ++V+DE + Sbjct 162 PTPYETFQSTHPSILIGTPGRLAAFLLNPRGLAIVRVSELDVLVLDEADRLLSSPDHRRD 221 Query 146 MSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLD 193 + + + ++ + +A+ + + + +++ NL Sbjct 222 VERIMRHLPKQRRTHL----FSATMTDAVEEMIGLGLRNPVRIVVNLK 265 >sp|A7TT88|ROK1_VANPO ATP-dependent RNA helicase ROK1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 GN=ROK1 PE=3 SV=1 Length=570 Score = 79.5 bits (194), Expect = 3e-14, Method: Composition-based stats. Identities = 68/424 (16%), Positives = 149/424 (35%), Gaps = 61/424 (14%) Query 143 NVIMSQYLELKLQRAQPLPQVL---GLTASPGTGGASKLDGAINHVLQLCANLDT----W 195 N+I++ + E + + +P L + A TG L I + Q+ + DT Sbjct 145 NLILNHFTEPTPIQCEAIPLALNNRDMLACAPTGSGKTLAFLIPLIQQVINDKDTQGLKG 204 Query 196 CIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRK-FG 254 I+SP + + C + S F D + L + +L K Sbjct 205 LIISPTKELA---------NQIFLECIKLSNRIFLDKKRPLQVALLSKSLSAKLRNKVIS 255 Query 255 TQMYE--------------QQVVKLSEAAALAGLQEQRVY-ALHLRRYNDALLIHDTVRA 299 + Y+ + + LS+ L + +++ + + +D L Sbjct 256 DKKYDIIVSTPLRLIDVVKNEALDLSQVKHLIFDEADKLFDKTFVEQSDDILSSCSHSSL 315 Query 300 VDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH-LATHGPENPKLEMLEKIL 358 ++ + + E + K+ ++ R ++ + + L G E KL +++++ Sbjct 316 RKSMFSATIPSNVEEIAKSIMMDPVRVIIGHKEAANTSIEQKLVFCGNEEGKLIAIKQLV 375 Query 359 QRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQR 418 Q P IIF + A +L + + ++ TQ Sbjct 376 QE---GEFKPPVIIFLESITRAKAL------YHEMMYDSLNVDVI--------HAERTQV 418 Query 419 DQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARG---RARAD 475 + ++I++F+ G L L+ T V G+D N+V+ Y + + V G R Sbjct 419 QRNKIIERFKSGDLWCLITTDVLARGVDFKGVNLVINYDVPRTAQAYVHRIGRTGRGGRS 478 Query 476 QSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQ--AEYQAKIRDLQQAALTKR 533 F E S + + + +M+Q+ + + + + ++ K ++L + Sbjct 479 GKAVTFYTKEDSIAI------KPIINVMKQSGSEISEWMEKVSKMTKKEKELVKKGRAHS 532 Query 534 AAQA 537 + Sbjct 533 ERKQ 536 Score = 56.0 bits (133), Expect = 7e-07, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 59/139 (42%), Gaps = 17/139 (12%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAY--VAKRHLETVD--GAKVVVLVNRVHLVTQ 62 Q E I AL ++++ PTG+GKT A + ++ + D G K +++ L Q Sbjct 158 QCEAIPLALNNRDMLACAPTGSGKTL-AFLIPLIQQVINDKDTQGLKGLIISPTKELANQ 216 Query 63 HGEEFRRMLD-------GRWTVTTLSGDMGPRAGFGHLA-RCHDLLICTAELLQMALTSP 114 E ++ + V LS + + ++ + +D+++ T L + Sbjct 217 IFLECIKLSNRIFLDKKRPLQVALLSKSLSAKLRNKVISDKKYDIIVSTPLRLIDVV--- 273 Query 115 EEEEHVELTVFSLIVVDEC 133 + E ++L+ ++ DE Sbjct 274 -KNEALDLSQVKHLIFDEA 291 >sp|Q3K051|UVRB_STRA1 UvrABC system protein B OS=Streptococcus agalactiae serotype Ia (strain ATCC 27591 / A909 / CDC SS700) OX=205921 GN=uvrB PE=3 SV=1 Length=663 Score = 79.8 bits (195), Expect = 3e-14, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 75/184 (41%), Gaps = 21/184 (11%) Query 349 PKLEMLEKILQRQ-FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG 407 P + ++ +L + R I T T++ A L +L++ +G Sbjct 431 PSMGQMDDLLGEINLRTEKGERTFITTLTKRMAEDLTDYLKE--------------MGVK 476 Query 408 NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNE 462 + + ++ E+I+ + G ++L+ ++ EG+D+P ++V L NE Sbjct 477 VKYMHSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNE 536 Query 463 ISMVQARGRARADQSVYAFVATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAK 521 ++Q GRA + + + + + + ++R + A ++ + + + Sbjct 537 RGLIQTIGRAARNSNGHVIMYADKITDSMQRAMDETARRRRLQMDYNEKHGIVPQTIKKE 596 Query 522 IRDL 525 IRDL Sbjct 597 IRDL 600 >sp|Q9HMT9|UVRB_HALSA UvrABC system protein B OS=Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) OX=64091 GN=uvrB PE=3 SV=1 Length=689 Score = 79.8 bits (195), Expect = 4e-14, Method: Composition-based stats. Identities = 36/203 (18%), Positives = 71/203 (35%), Gaps = 22/203 (11%) Query 351 LEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSS 410 +E L + + R ++ T T++ A L +L++ G Sbjct 444 VEDLMDRIDE--RVARDERVLVTTLTKRMAEDLTEYLEEA--------------GVAVEY 487 Query 411 QSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISM 465 ++ E+++ + G ++LV ++ EGLDIP ++V L +E S+ Sbjct 488 MHDETDTLERHELVRGLRLGEYDVLVGINLLREGLDIPEVSLVAILDADQQGFLRSETSL 547 Query 466 VQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRD 524 VQ GR AR A E + ++ + +++A + + D Sbjct 548 VQTMGRAARNVNGEVVLYADETTDAMQAAIDETQRRRRIQRAFNEDHGTTPTTIEKAVGD 607 Query 525 LQQAALTKRAAQAAQRENQRQQF 547 + A A +Q Sbjct 608 MNLPGAETDTADVAGDAPSDEQE 630 >sp|A5E1N2|ROK1_LODEL ATP-dependent RNA helicase ROK1 OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) OX=379508 GN=ROK1 PE=3 SV=1 Length=553 Score = 79.5 bits (194), Expect = 4e-14, Method: Composition-based stats. Identities = 54/308 (18%), Positives = 110/308 (36%), Gaps = 34/308 (11%) Query 263 VKLSEAAALAGLQEQRVYALHLRRYNDALLIH-DTVRAVDALAALQDFYHREHVTKTQIL 321 V LS+ L + +++ D LL H V+ ++ + E + + + Sbjct 263 VDLSKVTQLVIDEADKLFDHGFAEQTDELLSHCTNVKIRKSMFSATIPSGVEEMAHSIMK 322 Query 322 CAERRLLALFDDRKNELAH-LATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSA 380 R ++ + N + L G E KL + +++Q P IIF ++ A Sbjct 323 DPIRVIIGHKEAASNTIEQKLVFTGNEEGKLLAIRQMIQN---GEFKPPIIIFLQSITRA 379 Query 381 HSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSV 440 +L + T + + EVI++F++G + +L+ T V Sbjct 380 KAL--------------FHELVYDKLNVDVIHAERTPKQRDEVIKRFKNGDIWVLITTDV 425 Query 441 AEEGLDIPHCNVVVRYGLLTNEISMVQARG---RARADQSVYAFVATEGSRELK------ 491 G+D N+V+ Y + + + V G R F E + +K Sbjct 426 LARGVDFKGVNMVINYDVPQSAQAYVHRIGRTGRGGRSGKAVTFFTKEDDKAVKPIINVM 485 Query 492 -----RELINEALETLMEQAVAAVQKMDQAEYQA-KIRDLQQAALTKRAAQAAQRENQRQ 545 + +++ +E L + + + + E + KI + KR + E ++ Sbjct 486 KQSGCTDGLSDWMEDLGKLSKREKRAVKTHEIERKKISTVPSVIKQKRKQRQNMIEASKR 545 Query 546 QFPVEHVQ 553 + E Q Sbjct 546 RKQAESEQ 553 Score = 53.3 bits (126), Expect = 6e-06, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 56/138 (41%), Gaps = 19/138 (14%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAA-------YVAKRHLETVDGAKVVVLVNRVHL 59 Q E I L +++I PTG+GKT A V++ L+ G + +++ L Sbjct 147 QCEAIPITLANRDLIACAPTGSGKTL-AFLIPLLQQLVSQNVLKNH-GIRGLIISPTNEL 204 Query 60 ---VTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLA-RCHDLLICTAELLQMALTSPE 115 + Q E + + LS + + + +D+L+ T L + Sbjct 205 AVQIFQQLEIISK--GKGLNIAILSKQLAGKISNDVVKASKYDILVSTPLRLIDVV---- 258 Query 116 EEEHVELTVFSLIVVDEC 133 + V+L+ + +V+DE Sbjct 259 KLGKVDLSKVTQLVIDEA 276 >sp|A6VQU2|RAPA_ACTSZ RNA polymerase-associated protein RapA OS=Actinobacillus succinogenes (strain ATCC 55618 / DSM 22257 / CCUG 43843 / 130Z) OX=339671 GN=rapA PE=3 SV=1 Length=966 Score = 80.2 bits (196), Expect = 4e-14, Method: Composition-based stats. Identities = 81/491 (16%), Positives = 159/491 (32%), Gaps = 50/491 (10%) Query 27 GAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHG----EEFRRMLDGRWTVTTLSG 82 G GKT A + ++ + +V+++V L Q F Sbjct 179 GLGKTIEAGMILQQQIFAGRADRVLIVVP-ESLQHQWLVEMLRRFNLHFSLFDEERAEDF 237 Query 83 DMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHTHKDTVY 142 + +L+IC+ + L ++ P+ T F L++VDE HH Sbjct 238 AATDEQEECNPFDSENLIICSLDWL---ISRPKRRTQALQTQFDLLIVDEAHHLTWSPEA 294 Query 143 NVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQN 202 +L + +P VL LTA+P + G +H +L LD Sbjct 295 AN---PEYQLVESLTKQIPSVLLLTATP------EQLGQESHFARL-KLLDADRFYDYDA 344 Query 203 CCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQV 262 + + + +P +++P + I D LE +L F + Sbjct 345 FVAEQRHY--RPVADAVQT-LLAENPLS---AAEKNAISDLLEEQDLEPLFKALDSRNEE 398 Query 263 VKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV--DALAALQDFYHREHVTKTQI 320 K + L R + N + R + L Y ++ Sbjct 399 EKATVRQELIDSLIDRHGTSRVLFRNTRQGVKGFPRRIYRQINLPLPKQYINAVRVVGRL 458 Query 321 LCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSA 380 L + + A +P++E L L+ + + ++ R Q+A Sbjct 459 GKNPEDELFYPERLFQNMDQNAKWWDFDPRVEWLITFLKNH----RAEKVLVICRQAQTA 514 Query 381 HSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF--QDGTLNLLVAT 438 L L+ ++G IR + ++ ++ F Q+ +L+++ Sbjct 515 VQLEQALRAKEG-----IRCAVF--------HERLSIIERDRAAAYFADQENGAQVLLSS 561 Query 439 SVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-----ARADQSVYAFVATEGSRELKRE 493 ++ EG + +V + L N + Q GR R D +Y + + + + Sbjct 562 AIGSEGRNFQFACRLVLFNLPENPDLLEQCIGRLDRIGQRRDIRIYVPCFADSPQAVLAD 621 Query 494 LINEALETLME 504 ++ L E Sbjct 622 WFHQGLNAFEE 632 >sp|A5GHU1|UVRB_SYNPW UvrABC system protein B OS=Synechococcus sp. (strain WH7803) OX=32051 GN=uvrB PE=3 SV=1 Length=678 Score = 79.8 bits (195), Expect = 4e-14, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 56/129 (43%), Gaps = 19/129 (15%) Query 363 SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE 422 +S R ++ T T++ A L +L + + +R + L + + ++ E Sbjct 440 RASKQQRVLVTTLTKRMAEDLTDYLAENE------VRVRYL--------HSEIHSIERIE 485 Query 423 VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQS 477 +IQ + G ++LV ++ EGLD+P ++V L E S++Q GRA Sbjct 486 IIQDLRLGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAARHVE 545 Query 478 VYAFVATEG 486 A + + Sbjct 546 GVALLYADN 554 >sp|B0U4J3|UVRB_XYLFM UvrABC system protein B OS=Xylella fastidiosa (strain M12) OX=405440 GN=uvrB PE=3 SV=1 Length=669 Score = 79.8 bits (195), Expect = 4e-14, Method: Composition-based stats. Identities = 30/144 (21%), Positives = 58/144 (40%), Gaps = 19/144 (13%) Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 R ++ T T++ A +L +L +Q G + + ++ E+I+ Sbjct 446 GDRVLVTTLTKRMAENLTEYLSEQ--------------GIRIRYLHSEIDTVERVEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L + S++Q GRA A Sbjct 492 LRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTSSLIQTIGRAARSVRGRAI 551 Query 482 VATEGSRELKRELINEALETLMEQ 505 + + R I+E +Q Sbjct 552 LYADKVTRSMRAAIDETERRRQKQ 575 >sp|Q5NFN4|UVRB_FRATT UvrABC system protein B OS=Francisella tularensis subsp. tularensis (strain SCHU S4 / Schu 4) OX=177416 GN=uvrB PE=3 SV=1 Length=668 Score = 79.8 bits (195), Expect = 4e-14, Method: Composition-based stats. Identities = 28/163 (17%), Positives = 69/163 (42%), Gaps = 27/163 (17%) Query 365 SNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVI 424 + R +I T T++ +L +L + G + + ++ ++I Sbjct 442 AKEERVLITTLTKKMVENLTEYLSE--------------HGVNVRYLHSDIDTVERVQII 487 Query 425 QKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVY 479 + G ++LV ++ EGLD+P V++ + L +E S++Q GR +Q+ Sbjct 488 HDLRHGVFDVLVGINLLREGLDMPEVGVLLIFDADKEGFLRSEKSLIQTIGRVARNQNGR 547 Query 480 AFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKI 522 A + +++ ++++ M++ + + D+ + I Sbjct 548 AILYA--------DVVTKSMQKAMDETLRRRKLQDEYNQKHNI 582 >sp|Q87AT6|UVRB_XYLFT UvrABC system protein B OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) OX=183190 GN=uvrB PE=3 SV=1 Length=669 Score = 79.8 bits (195), Expect = 4e-14, Method: Composition-based stats. Identities = 30/144 (21%), Positives = 58/144 (40%), Gaps = 19/144 (13%) Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 R ++ T T++ A +L +L +Q G + + ++ E+I+ Sbjct 446 GDRVLVTTLTKRMAENLTEYLSEQ--------------GIRIRYLHSEIDTVERVEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L + S++Q GRA A Sbjct 492 LRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTSSLIQTIGRAARSVRGRAI 551 Query 482 VATEGSRELKRELINEALETLMEQ 505 + + R I+E +Q Sbjct 552 LYADKVTRSMRAAIDETERRRQKQ 575 >sp|B2I8F9|UVRB_XYLF2 UvrABC system protein B OS=Xylella fastidiosa (strain M23) OX=405441 GN=uvrB PE=3 SV=1 Length=669 Score = 79.8 bits (195), Expect = 4e-14, Method: Composition-based stats. Identities = 30/144 (21%), Positives = 58/144 (40%), Gaps = 19/144 (13%) Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 R ++ T T++ A +L +L +Q G + + ++ E+I+ Sbjct 446 GDRVLVTTLTKRMAENLTEYLSEQ--------------GIRIRYLHSEIDTVERVEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L + S++Q GRA A Sbjct 492 LRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTSSLIQTIGRAARSVRGRAI 551 Query 482 VATEGSRELKRELINEALETLMEQ 505 + + R I+E +Q Sbjct 552 LYADKVTRSMRAAIDETERRRQKQ 575 >sp|A5UNK6|UVRB_METS3 UvrABC system protein B OS=Methanobrevibacter smithii (strain ATCC 35061 / DSM 861 / OCM 144 / PS) OX=420247 GN=uvrB PE=3 SV=1 Length=655 Score = 79.8 bits (195), Expect = 4e-14, Method: Composition-based stats. Identities = 85/548 (16%), Positives = 171/548 (31%), Gaps = 121/548 (22%) Query 26 TGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDG------------ 73 TG+GKT +E V +V+ N L Q EEF+ Sbjct 40 TGSGKTFT----MANVIEKVQKPTLVISHN-KTLAAQLYEEFKEFFPDNAVEYFVSYYDY 94 Query 74 -------RWTVTTLSGDMGPRAGFG--------HLARCHDLLICTAELLQMALTSPEEEE 118 T T + + L D+++ ++ + SPE+ Sbjct 95 YQPEAYVPRTDTFIDKESSVNEEIDIMRHSATQSLLSRDDVIVVSSVSCIYGIGSPEDYG 154 Query 119 HVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLG--LTASPGTGGAS 176 F + V D + D + ++ QY ++ A+ +V G + +P G Sbjct 155 EFA---FGIAVGDNYDRS--DIIRKLVFMQYERNDIEFARGHFRVRGDVIEINPVHGTPP 209 Query 177 KLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKL 236 + + +D L+ + P K + + QD ++ + Sbjct 210 VRVELFGDEIDAISLIDKVT----GKKTESLKRYMIFPAKHFVV----GQDKMDTAIRNI 261 Query 237 MDQIHDHLEMPELSRKF-GTQMYEQQVVKLSEAAALAGLQ----------EQRVYA---L 282 D++ + L LS K Q EQ+ E G R + Sbjct 262 SDELDERLNEFNLSNKLLEAQRLEQRTRFDIEMLQEMGYCPGVENYSMHLSGRKWGEKPY 321 Query 283 HLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLA 342 L +Y + + L ++ Y+ + K ++ RL + ++R Sbjct 322 SLLKYFPEDYLTIIDESHVTLPQIRGMYNGDRARKETLVEHGFRLPSAKENRPLRFDEFE 381 Query 343 TH---------------------------------------GPENPKLEMLEKILQRQFS 363 + P ++E L +++ Sbjct 382 SSINQIIYVSATPGAYELSRSSNIVEQIIRPTGLVDPEVIIRPVKGQVEDLLGEVKK--R 439 Query 364 SSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEV 423 + R ++ T T++ A L + + IG + + ++ ++ Sbjct 440 AKKDERVLVTTLTKKMAEDLTDYYAK--------------IGVKVRYMHSEIDTLERIDI 485 Query 424 IQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSV 478 + + GT ++LV ++ EGLD+P ++V L NE S++Q GRA + + Sbjct 486 VDDLRRGTFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNETSLIQTIGRAARNING 545 Query 479 YAFVATEG 486 + + Sbjct 546 QVIMYVDE 553 >sp|Q9FNQ1|DEXHE_ARATH DExH-box ATP-dependent RNA helicase DExH14 OS=Arabidopsis thaliana OX=3702 GN=BRR2C PE=2 SV=1 Length=2157 Score = 80.2 bits (196), Expect = 4e-14, Method: Composition-based stats. Identities = 34/164 (21%), Positives = 67/164 (41%), Gaps = 19/164 (12%) Query 18 KNIIIWLPTGAGKTRAAAYVAKRHLET--------VDGAKVVVLVNRVHLVTQHGEEF-R 68 +NI++ PTGAGKT A ++ + K+V + L + F R Sbjct 524 ENILVCAPTGAGKTNIAMISVLHEIKQHFRDGYLHKNEFKIVYVAPMKALAAEVTSAFSR 583 Query 69 RMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLI 128 R+ V L+GDM +++ T E +T + + + + L+ Sbjct 584 RLAPLNMVVKELTGDMQLTKTE---LEETQMIVTTPEK-WDVITRKSSDMSMSM-LVKLL 638 Query 129 VVDECHHTHKDTVYNVIMSQYLELKLQ---RAQPLPQVLGLTAS 169 ++DE H + D ++ + L+ Q + +++GL+A+ Sbjct 639 IIDEVHLLNDDRGA--VIEALVARTLRQVESTQTMIRIVGLSAT 680 Score = 72.1 bits (175), Expect = 1e-11, Method: Composition-based stats. Identities = 29/154 (19%), Positives = 60/154 (39%), Gaps = 8/154 (5%) Query 17 GKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRML--DGR 74 N+++ PTG+GKT +A R T KVV + +V + ++++ L Sbjct 1371 DNNVLVGAPTGSGKTISAELAMLRLFSTQPDMKVVYIAPLKAIVRERMNDWKKHLVAPLG 1430 Query 75 WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECH 134 + ++GD P D++I T E ++ + L+++DE H Sbjct 1431 KEMVEMTGDYTPDLV---ALLSADIIISTPEK-WDGISRNW-HTRSYVKKVGLVILDEIH 1485 Query 135 HTHKD-TVYNVIMSQYLELKLQRAQPLPQVLGLT 167 D ++ + + + + +GL+ Sbjct 1486 LLGADRGPILEVIVSRMRYISSQTERSVRFVGLS 1519 Score = 43.2 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 34/192 (18%), Positives = 69/192 (36%), Gaps = 36/192 (19%) Query 363 SSSNSPRGIIFTRTRQ----SAHSLLLWLQQQQGLQ--TVDIRAQL-------------- 402 S + +IF +R+ +A L+ +Q + L T + Q Sbjct 741 SIKQGHQAMIFVHSRKDTSKTAEKLVDLARQYETLDLFTNETHPQFQLMKKDVMKSRNKD 800 Query 403 ---LIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVR---- 455 AG M + D+ + F DG L +LV T+ G+++P VV++ Sbjct 801 LVKFFEAGFGIHHAGMLRSDRTLTERLFSDGLLKVLVCTATLAWGVNLPAHTVVIKGTQL 860 Query 456 YGL---------LTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQA 506 Y + + + + GR + D+S + T + + + + Q Sbjct 861 YDAKAGGWKDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHDKLAYYLRLLTSQLPIESQF 920 Query 507 VAAVQKMDQAEY 518 +++++ AE Sbjct 921 ISSLKDNLNAEV 932 >sp|A9BD93|UVRB_PROM4 UvrABC system protein B OS=Prochlorococcus marinus (strain MIT 9211) OX=93059 GN=uvrB PE=3 SV=1 Length=679 Score = 79.8 bits (195), Expect = 4e-14, Method: Composition-based stats. Identities = 32/156 (21%), Positives = 63/156 (40%), Gaps = 22/156 (14%) Query 366 NSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQ 425 R +I T T++ A L +L + + ++ + L + + ++ E+IQ Sbjct 443 KKERVLITTLTKRMAEDLSDYLSENR------VKVRYL--------HSEIHSIERIEIIQ 488 Query 426 KFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYA 480 + G ++LV ++ EGLD+P ++VV L + S++Q GRA +A Sbjct 489 DLRVGEYDVLVGVNLLREGLDLPEVSLVVILDADKEGFLRAKRSLIQTIGRAARHVDGFA 548 Query 481 FVATEGSRELKRELINEALETLMEQAVAAVQKMDQA 516 + + L + ET +A+ Sbjct 549 LLYADN---LTESMSTAIQETERRRAIQQAYNQKHG 581 >sp|A1JJG0|RAPA_YERE8 RNA polymerase-associated protein RapA OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081) OX=393305 GN=rapA PE=3 SV=1 Length=968 Score = 79.8 bits (195), Expect = 4e-14, Method: Composition-based stats. Identities = 72/456 (16%), Positives = 155/456 (34%), Gaps = 50/456 (11%) Query 27 GAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGP 86 G GKT A + + L + +++++V L Q E R + R+++ S Sbjct 180 GLGKTIEAGMIIHQQLLSGRAERILIVVP-ESLQHQWLVEMLRRFNLRFSLFDDSRYSEA 238 Query 87 RAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHT--HKDTVYNV 144 + ++IC+ L + + E + + L+VVDE HH ++ Sbjct 239 LLDSTNPFETEQMVICS---LDFVRRNKQRLEQLADASWDLLVVDEAHHLAWSEEAPSRE 295 Query 145 IMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCC 204 ++ Q A+ +P VL LTA+P + G +H +L LD + Sbjct 296 -----YQVIEQLAEHIPGVLLLTATP------EQLGQQSHFARL-RLLDPDRFHDYEEFI 343 Query 205 PQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVK 264 + + +P + D L L+ ++ + ++ L + +Q + + + Sbjct 344 NE--QQKYRPIADAVTLLLGGERLTDDKLN-LLGELINEQDIEPLLKAANSQTEDSEAAR 400 Query 265 LSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAE 324 L R H + + Q ++ + + I+ A+ Sbjct 401 QELVTMLMDRHGTSRILFRNTRNGVKGFPHRVLHQIKLPLPTQ---YQTAIKVSGIMGAK 457 Query 325 RRLLALFDDRKNELAHLATHGPEN-------PKLEMLEKILQRQFSSSNSPRGIIFTRTR 377 + L A D EN P++E L L ++ + + ++ Sbjct 458 KSLEARAKDMLYPEQIYQEFEGENATWWNFDPRVEWLLNYLI----ANRNEKVLVICAQA 513 Query 378 QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGT--LNLL 435 +A L L++++ ++ ++ ++ F +L Sbjct 514 ATALQLEQVLREREAIRAAVFH-------------EGLSLIERDRAAAYFASEEDGAQVL 560 Query 436 VATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 + + + EG + +V + L N + Q GR Sbjct 561 LCSEIGSEGRNFQFACQLVMFDLPFNPDLLEQRIGR 596 >sp|Q8DYL6|UVRB_STRA5 UvrABC system protein B OS=Streptococcus agalactiae serotype V (strain ATCC BAA-611 / 2603 V/R) OX=208435 GN=uvrB PE=3 SV=1 Length=663 Score = 79.5 bits (194), Expect = 4e-14, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 75/184 (41%), Gaps = 21/184 (11%) Query 349 PKLEMLEKILQRQ-FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG 407 P + ++ +L + R I T T++ A L +L++ +G Sbjct 431 PSMGQMDDLLGEINLRTEKGERTFITTLTKRMAEDLTDYLKE--------------MGVK 476 Query 408 NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNE 462 + + ++ E+I+ + G ++L+ ++ EG+D+P ++V L NE Sbjct 477 VKYMHSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNE 536 Query 463 ISMVQARGRARADQSVYAFVATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAK 521 ++Q GRA + + + + + + ++R + A ++ + + + Sbjct 537 RGLIQTIGRAARNSNGHVIMYADKITDSMQRAMDETARRRRLQMDYNEKHGIVPQTIKKE 596 Query 522 IRDL 525 IRDL Sbjct 597 IRDL 600 >sp|Q8E471|UVRB_STRA3 UvrABC system protein B OS=Streptococcus agalactiae serotype III (strain NEM316) OX=211110 GN=uvrB PE=3 SV=1 Length=663 Score = 79.5 bits (194), Expect = 4e-14, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 75/184 (41%), Gaps = 21/184 (11%) Query 349 PKLEMLEKILQRQ-FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG 407 P + ++ +L + R I T T++ A L +L++ +G Sbjct 431 PSMGQMDDLLGEINLRTEKGERTFITTLTKRMAEDLTDYLKE--------------MGVK 476 Query 408 NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNE 462 + + ++ E+I+ + G ++L+ ++ EG+D+P ++V L NE Sbjct 477 VKYMHSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNE 536 Query 463 ISMVQARGRARADQSVYAFVATEG-SRELKRELINEALETLMEQAVAAVQKMDQAEYQAK 521 ++Q GRA + + + + + + ++R + A ++ + + + Sbjct 537 RGLIQTIGRAARNSNGHVIMYADKITDSMQRAMDETARRRRLQMDYNEKHGIVPQTIKKE 596 Query 522 IRDL 525 IRDL Sbjct 597 IRDL 600 >sp|Q9PER1|UVRB_XYLFA UvrABC system protein B OS=Xylella fastidiosa (strain 9a5c) OX=160492 GN=uvrB PE=3 SV=1 Length=669 Score = 79.5 bits (194), Expect = 4e-14, Method: Composition-based stats. Identities = 30/144 (21%), Positives = 58/144 (40%), Gaps = 19/144 (13%) Query 367 SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQK 426 R ++ T T++ A +L +L +Q G + + ++ E+I+ Sbjct 446 GDRVLVTTLTKRMAENLTEYLSEQ--------------GIRIRYLHSEIDTVERVEIIRD 491 Query 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAF 481 + G ++LV ++ EGLD+P ++V L + S++Q GRA A Sbjct 492 LRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTSSLIQTIGRAARSVRGRAI 551 Query 482 VATEGSRELKRELINEALETLMEQ 505 + + R I+E +Q Sbjct 552 LYADKVTRSMRAAIDETERRRQKQ 575 >sp|Q7UZL3|UVRB_PROMP UvrABC system protein B OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / NIES-2087 / MED4) OX=59919 GN=uvrB PE=3 SV=1 Length=679 Score = 79.5 bits (194), Expect = 4e-14, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 60/140 (43%), Gaps = 19/140 (14%) Query 363 SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE 422 + + R ++ T T++ A L +L + +R + L + + ++ E Sbjct 440 RAKKNQRVLVTTLTKRMAEDLTDFLSDNK------VRVRYL--------HSEIHSIERIE 485 Query 423 VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQS 477 +IQ + G ++LV ++ EGLD+P ++V L E S++Q GRA Sbjct 486 IIQDLRLGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAARHVE 545 Query 478 VYAFVATEGSRELKRELINE 497 A + + E + I+E Sbjct 546 GVALLYADNFTESMKRAISE 565 >sp|Q6CSW1|ROK1_KLULA ATP-dependent RNA helicase ROK1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=ROK1 PE=3 SV=1 Length=579 Score = 79.5 bits (194), Expect = 4e-14, Method: Composition-based stats. Identities = 25/115 (22%), Positives = 40/115 (35%), Gaps = 14/115 (12%) Query 353 MLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQS 412 L I Q P IIF + A +L L Sbjct 369 KLIAIRQLVLEGEFKPPVIIFLESITRAKAL--------------FHELLYDKLNVDVIH 414 Query 413 THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 TQ + ++I++F+ G L L+ T V G+D N+V+ Y + + + V Sbjct 415 AERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVH 469 Score = 47.1 bits (110), Expect = 5e-04, Method: Composition-based stats. Identities = 27/139 (19%), Positives = 53/139 (38%), Gaps = 17/139 (12%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAY--VAKRHL--ETVDGAKVVVLVNRVHLVTQ 62 Q E I L +++I PTG+GKT A + ++ + +T G K +++ L Q Sbjct 160 QSESIPILLHERDMIACAPTGSGKTL-AFLIPLLQQIINDKTTVGLKGLIISPTKELANQ 218 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLA--------RCHDLLICTAELLQMALTSP 114 E ++ + + + + +D++I T L + Sbjct 219 IFIECSKLANKIYLDKKRPLQVALLSKSLSSKLKNKVISEDKYDIIISTPLRLITVV--- 275 Query 115 EEEEHVELTVFSLIVVDEC 133 +EE + L ++ DE Sbjct 276 -QEEALNLGKVKHLIFDEA 293 >sp|P34640|DDX55_CAEEL Probable ATP-dependent RNA helicase DDX55 homolog OS=Caenorhabditis elegans OX=6239 GN=ZK512.2 PE=3 SV=2 Length=578 Score = 79.5 bits (194), Expect = 4e-14, Method: Composition-based stats. Identities = 57/390 (15%), Positives = 128/390 (33%), Gaps = 30/390 (8%) Query 197 IMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQ 256 I + + + P ++ PF + L ++ + ++ + + F + Sbjct 71 IQNAKLQPADIGALILSPSRELCSQIVSVIQPFAEKLNLTVETVTGGQKVDKNIKMFKNK 130 Query 257 MYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVT 316 V + +Q ++ R L+I + R + +H+ Sbjct 131 NVNILVA--TPGRLFQIIQHEKTLIARKMRTLQLLVIDEADR-------FNEIQFEDHMR 181 Query 317 KTQILCAERRLLALFDD-RKNELAHLATHGPENPKLEMLEKI--------LQRQF----S 363 + ++R LF + E L G N K + + L+ + + Sbjct 182 EILSCIPKQRRTGLFSATQVKEEDDLMVFGLRNAKQVKVAQERNSAAPSTLKNYYVECRA 241 Query 364 SSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEV 423 + + F R R L+ + I + L + + + Sbjct 242 DEKTSVCLEFIRQRTDKKILIFFPSCNSVRYFYKIFERCLGKRPLFAVHGKCSNPHRASQ 301 Query 424 IQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFV 482 I+ F D T ++++T V G+DI + V+++ L + V GR AR + A + Sbjct 302 IKAFSDSTNGVMISTDVMARGIDISDIDWVIQFDLPKHSSWFVHRAGRTARCGREGNALI 361 Query 483 ATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQREN 542 + ++ + +++ ++E +L+Q + + + A E Sbjct 362 LIASEQLAYVNFLDNHEKVKLDEIKVPTNNSRKSE------ELRQKMIKIQVSDRAILEA 415 Query 543 QRQQFPVEHVQLLCINCMVAVGHGSDLRKV 572 + F V HV+ + + DL V Sbjct 416 GTRAF-VSHVESYAKHDCHLICSLDDLNVV 444 Score = 61.0 bits (146), Expect = 2e-08, Method: Composition-based stats. Identities = 27/193 (14%), Positives = 65/193 (34%), Gaps = 15/193 (8%) Query 25 PTGAGKTRAAAYVAKRHLETVDGAKV----VVLVNRVHLVTQHGEEFRRMLDGRWTV--T 78 PTG+GKT A R ++ ++L L +Q + + T Sbjct 54 PTGSGKTLAFVLPMMRMIQNAKLQPADIGALILSPSRELCSQIVSVIQPFAEKLNLTVET 113 Query 79 TLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHTHK 138 G + + ++L+ T L + + ++ L+V+DE Sbjct 114 VTGGQKVDKNIKMFKNKNVNILVATPGRLFQIIQHEKTLIARKMRTLQLLVIDEADR--- 170 Query 139 DTVYNVIMSQYLELKLQRAQPLPQVLGL-TASPGTGGASKLDGAINH--VLQLCANLDTW 195 +N I + ++ P + GL +A+ + + + +++ ++ Sbjct 171 ---FNEIQFEDHMREILSCIPKQRRTGLFSATQVKEEDDLMVFGLRNAKQVKVAQERNSA 227 Query 196 CIMSPQNCCPQLQ 208 + +N + + Sbjct 228 APSTLKNYYVECR 240 >sp|Q5N3H1|UVRB_SYNP6 UvrABC system protein B OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=uvrB PE=3 SV=1 Length=666 Score = 79.5 bits (194), Expect = 4e-14, Method: Composition-based stats. Identities = 37/225 (16%), Positives = 89/225 (40%), Gaps = 34/225 (15%) Query 319 QILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQ 378 +I +E +++ + P +++ L +Q++ R +I T T++ Sbjct 398 EIERSEEQIVEQVIRPTGVVDPEVFVRPTEGQVDDLLAEIQQRVRRQE--RALITTLTKR 455 Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT 438 A L +L + G + + ++ E++Q ++G ++L+ Sbjct 456 MAEDLTDYLSDR--------------GVKVRYLHSEINSIERIEILQDLRNGDFDVLIGV 501 Query 439 SVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAFVATEGSRELKRE 493 ++ EGLD+P ++V L E S++Q GRA + A + + Sbjct 502 NLLREGLDLPEVSLVAILDADKEGFLRTERSLIQTIGRAARHINGQAILYADR------- 554 Query 494 LINEALETLMEQAVAAVQKMDQAEYQ-AKIRDLQQAALTKRAAQA 537 + ME+A++ ++ + + + ++ + KR++ A Sbjct 555 -----MTESMEKAISETERRRRIQLDYNQRHNITPQPIIKRSSNA 594 >sp|Q31QS4|UVRB_SYNE7 UvrABC system protein B OS=Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805) OX=1140 GN=uvrB PE=3 SV=1 Length=666 Score = 79.5 bits (194), Expect = 4e-14, Method: Composition-based stats. Identities = 37/225 (16%), Positives = 89/225 (40%), Gaps = 34/225 (15%) Query 319 QILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQ 378 +I +E +++ + P +++ L +Q++ R +I T T++ Sbjct 398 EIERSEEQIVEQVIRPTGVVDPEVFVRPTEGQVDDLLAEIQQRVRRQE--RALITTLTKR 455 Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT 438 A L +L + G + + ++ E++Q ++G ++L+ Sbjct 456 MAEDLTDYLSDR--------------GVKVRYLHSEINSIERIEILQDLRNGDFDVLIGV 501 Query 439 SVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAFVATEGSRELKRE 493 ++ EGLD+P ++V L E S++Q GRA + A + + Sbjct 502 NLLREGLDLPEVSLVAILDADKEGFLRTERSLIQTIGRAARHINGQAILYADR------- 554 Query 494 LINEALETLMEQAVAAVQKMDQAEYQ-AKIRDLQQAALTKRAAQA 537 + ME+A++ ++ + + + ++ + KR++ A Sbjct 555 -----MTESMEKAISETERRRRIQLDYNQRHNITPQPIIKRSSNA 594 >sp|B2VGQ6|RAPA_ERWT9 RNA polymerase-associated protein RapA OS=Erwinia tasmaniensis (strain DSM 17950 / CFBP 7177 / CIP 109463 / NCPPB 4357 / Et1/99) OX=465817 GN=rapA PE=3 SV=1 Length=968 Score = 79.8 bits (195), Expect = 4e-14, Method: Composition-based stats. Identities = 74/475 (16%), Positives = 158/475 (33%), Gaps = 42/475 (9%) Query 5 SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ 62 +Q + +++ G GKT A + + L+ +V+++V L Q Sbjct 156 PHQLHIAHDVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLQAGRAERVLIVVP-ETLQHQ 214 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 E R + R+ + + + ++IC+ L + + E + Sbjct 215 WLVEMLRRFNLRFALFDDDRYAQAQLDSDNPFDTEQMIICS---LDFVRRNKQRLEKLAD 271 Query 123 TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG 180 + L+VVDE HH +D ++ Q A+ +P +L LTA+P + G Sbjct 272 AEWDLMVVDEAHHLVWSEDAPSRE-----YQVIEQLAEQVPGILLLTATP------EQLG 320 Query 181 AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI 240 +H +L L + Q+H P Q D L L++ + Sbjct 321 MESHFARL--RLLDPDRFHDFAQFVEEQKHFS-PIADAVTLLLADQKIGNDELN-LLNDL 376 Query 241 HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQ-EQRVYALHLRRYNDALLIHDTVRA 299 ++ L + + + + + L RV + R + + Sbjct 377 MGEQDIEPLLQTANSDREGKLAARQELISMLMDRHGTSRVLFRNTRNGVKGFPKRELHQI 436 Query 300 VDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG---PENPKLEMLEK 356 L + + A+ R + + G +P++E Sbjct 437 RLPLPTQYQTAIKVSGIMSARKTADERAQDMLYPEQIYQEFEGDSGTWWNFDPRVE---- 492 Query 357 ILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMT 416 L +S+ + ++ +A L L++++G++ L I + + + + Sbjct 493 WLMGYLTSNRDKKVLVICAKAATALQLEQVLREREGIRAAVFHEGLSIIERDRAAAWFAS 552 Query 417 QRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 + D +L+ + + EG + + +V + L N + Q GR Sbjct 553 EED-----------GAQVLLCSEIGSEGRNFQFASQMVMFDLPFNPDLLEQRIGR 596 >sp|C6DEY0|RAPA_PECCP RNA polymerase-associated protein RapA OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) OX=561230 GN=rapA PE=3 SV=1 Length=967 Score = 79.8 bits (195), Expect = 4e-14, Method: Composition-based stats. Identities = 70/477 (15%), Positives = 152/477 (32%), Gaps = 46/477 (10%) Query 5 SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ 62 +Q + + +++ G GKT A + + L ++V+++V L Q Sbjct 155 PHQLHIAHEVGQRHAPRVLLADEVGLGKTIEAGMIIHQQLLAGRASRVLIIVP-ETLQHQ 213 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 E R + +++ + + L+IC+ L + + + Sbjct 214 WLVEMLRRFNLLFSLFDDERYAEAKLDSSNPFETEQLVICS---LGFVQRNAQRFAQLVN 270 Query 123 TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG 180 + L+VVDE HH +++ + A+ P VL LTA+P + G Sbjct 271 ADWDLLVVDEAHHLVWSEESPSAE-----YQAVETLARATPAVLLLTATP------EQLG 319 Query 181 AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI 240 +H +L LD Q + + +P + L L D + Sbjct 320 QQSHFARL-RLLDPNRFHDYQEFLAE--QQQYRPVADAVTLLLAGEKAQTAELNALSDLL 376 Query 241 HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV 300 ++ L + + + Q + A L R + + Sbjct 377 -GEQDIEPLLKAINSDSDDNQKARQELIAMLMDRHGTSRVLFRNTRQGVKGFPQRILHQI 435 Query 301 DALAALQDFYHREHVTKTQILCAE------RRLLALFDDRKNELAHLATHGPENPKLEML 354 L Y + + R +L + AT +P++E Sbjct 436 RL--PLPSQYQTAIKVSGIMNANKTLEVRARDMLYPEQIYQQLEGDDATWWNFDPRVE-- 491 Query 355 EKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTH 414 L +++ + ++ +A L L+ ++ ++ L I + + + Sbjct 492 --WLLNYLTANRDEKVLVICAQAATALQLEQVLRTREAIRAAVFHEGLSILERDRAAAYF 549 Query 415 MTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 ++ + +L+ + + EG + + +V + L N + Q GR Sbjct 550 ASEEE-----------GAQVLICSEIGSEGRNFQFASHLVMFDLPFNPDLLEQRIGR 595 >sp|A2QE29|SPB4_ASPNC ATP-dependent rRNA helicase spb4 OS=Aspergillus niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) OX=425011 GN=spb4 PE=3 SV=2 Length=642 Score = 79.5 bits (194), Expect = 4e-14, Method: Composition-based stats. Identities = 30/140 (21%), Positives = 54/140 (39%), Gaps = 15/140 (11%) Query 346 PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 P K ++ IL + I+F T L L + D + L G Sbjct 277 PPTHKFPAIKHILYSL--EPAPQKTIMFVSTCSGVDYLSAIL---PSIIGDDFQLIPLHG 331 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLN-LLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464 ++ +++ +F + +L+ T VA GLDIP +VV++ ++ + Sbjct 332 KHQANV--------REKNFNRFVNSHTPAILLTTDVASRGLDIPSVDVVIQIDPPSDPKT 383 Query 465 MVQARGRA-RADQSVYAFVA 483 + GRA RA + + V Sbjct 384 FIHRCGRAGRAGRKGLSVVL 403 Score = 42.9 bits (99), Expect = 0.011, Method: Composition-based stats. Identities = 30/154 (19%), Positives = 52/154 (34%), Gaps = 39/154 (25%) Query 18 KNIIIWLPTGAGKTRAAAY--VAKRHLETVDGAK-----VVVLVNRVHLVTQHGEEFRRM 70 K++++ TG+GKT + V ++ L + K +++ L +Q + Sbjct 52 KDVVVEAVTGSGKTL-SFLIPVVEKLLRLEEPLKKHHVGAIIISPTRELASQIYNVLTSL 110 Query 71 LDGRWTVTTL-----SGDMGPRAGFGH------------------------LARCHDLLI 101 L + D PR F L R +LL+ Sbjct 111 LAFHPPSASTLKPSDDDDDAPRQKFPSSTLKVVPQLLLGGSTTPAEDLSTFLKRSPNLLV 170 Query 102 CTAELLQMALTSPEEEEHVELTVFSLIVVDECHH 135 T L L+SP H + F ++V+DE Sbjct 171 STPGRLLELLSSP--HVHCPQSSFEMLVMDEADR 202 >sp|A7HKC0|UVRB_FERNB UvrABC system protein B OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) OX=381764 GN=uvrB PE=3 SV=1 Length=661 Score = 79.5 bits (194), Expect = 4e-14, Method: Composition-based stats. Identities = 90/623 (14%), Positives = 198/623 (32%), Gaps = 130/623 (21%) Query 8 WEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEF 67 + + ++ TG+GKT A V K V+++ L Q EF Sbjct 23 VNGLNKGYRFQTLLGV--TGSGKTFTMANVIKEV-----NRPVLIISPNKTLAAQLYSEF 75 Query 68 RRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVE-LTVFS 126 + DL I + + + +T Sbjct 76 KAFFPN--NKVEFFISYYDYYQPEAYVPTKDLYIEKSADINDVIARMRMSAIKSIMTRRD 133 Query 127 LIVVDECHHTHKDTVY-------------------NVIMSQYLELKLQRAQPLPQVLGLT 167 +IVV +Y + +S++++ ++ + +GLT Sbjct 134 VIVV-----ASVSAIYACGDPRDFDTLNIKLEVGQRINLSEFVKKLVKIGYERKEDIGLT 188 Query 168 ASPGTGGA------SKLDGAINHVLQLCANLDTWCIMSP--QNCCPQLQEHSQQPCKQYN 219 S G S D I + +D ++ +L + P K+Y Sbjct 189 GSFRLRGDTLEIFPSYQDEGIR-IELFGDEIDRMYTFDRMNRDVIERLDRLTIYPTKEYV 247 Query 220 LCHRRSQDPFGDL---LKKLMDQIHDHLEMPELSRKFGTQMYEQQVVK-------LSEAA 269 + + + L + + ++ + E R + M + +++ + + Sbjct 248 TTEEKIERAVKSIRAELDEQVKKLRSEGKELEAQRLWQRTMNDIELLSTLGYCTGIENYS 307 Query 270 ALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTK-------TQILC 322 ++ L Y D I + + L+ YH E K ++ C Sbjct 308 RHFDGRQPGEPPYSLLDYYDEDFIVFIDESHITIPQLRAMYHGEMSRKKSLVEYGFRLPC 367 Query 323 AERRLLALFDDRKNELAHL----ATHGP-------------------ENPKLEM------ 353 A FD+ ++ + AT GP +P++E+ Sbjct 368 AYDNRPLKFDEFMQKVNQVIFVSATPGPYELEVSEQVVEQIIRPTGLIDPQVEVRPTRYQ 427 Query 354 LEKILQRQFSSSN-SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQS 412 ++ ++ + ++ T+++A L +L + +IRA L Sbjct 428 VDDLVNEIVQVKKRGEKALVTVLTKKTAEMLAEYLVE------FNIRALYL--------H 473 Query 413 THMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQ 467 + + + EV++K + G ++++V ++ EGLD+P ++V L +E +++Q Sbjct 474 SELDAIKRVEVLKKLRAGEIDVVVGVNLLREGLDLPEVSLVAILDADTEGFLRSETTLIQ 533 Query 468 ARGRARADQSVYAFVATEGSRELKRELINE---------------------ALETLMEQA 506 GR +++ + + + I+E ++ LME Sbjct 534 IIGRTARNENGKVIMYADRITPAMQRAIDETNRRRKIQMEYNEKHGIKPKTIIKPLMEDI 593 Query 507 VAAVQKMDQAEYQAKIRDLQQAA 529 A + ++ Y+ + Q Sbjct 594 FAPFRDKEEEMYKVYEDSILQMK 616 >sp|A8G9P6|RAPA_SERP5 RNA polymerase-associated protein RapA OS=Serratia proteamaculans (strain 568) OX=399741 GN=rapA PE=3 SV=1 Length=968 Score = 79.8 bits (195), Expect = 4e-14, Method: Composition-based stats. Identities = 78/454 (17%), Positives = 155/454 (34%), Gaps = 46/454 (10%) Query 27 GAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGP 86 G GKT A + + L +V+++V L Q E R + +++ S Sbjct 180 GLGKTIEAGMIIHQQLLAGRAERVLIVVP-ETLQHQWLVEMMRRFNLYFSLFDDSRYSEA 238 Query 87 RAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHT--HKDTVYNV 144 + + L+IC+ L + E + + L+VVDE HH ++ Sbjct 239 KLDSSNPFETEQLVICS---LDFVRRNKLRLEELADAQWDLLVVDEAHHLAWSEEAPSRE 295 Query 145 IMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCC 204 ++ Q A+ +P VL LTA+P + G +H +L LD Q+ Sbjct 296 -----YQVIEQLAEHIPGVLLLTATP------EQLGQQSHFARL-RLLDPNRFHDYQDFV 343 Query 205 PQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVK 264 + + +P + D L L + I + P L +Q + Sbjct 344 AE--QQKYRPVADAVTLLLSGERLADDKLNLLGELIDEQDIEPLLKAANSDSDNSEQARQ 401 Query 265 LSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAE 324 + RV + R H + + Q ++ + + I+ A+ Sbjct 402 ELVTMLMDRHGTSRVLFRNTRNGV-KGFPHRFLHQIKLPLPTQ---YQTAIKVSGIMGAK 457 Query 325 RRLLALFDDRKNELAHLATHGPEN-------PKLEMLEKILQRQFSSSNSPRGIIFTRTR 377 + + A D EN P++E L L ++ + ++ Sbjct 458 KTVEARARDMLYPEQIYQEFEGENATWWNFDPRVEWLLNYLV----ANRHEKVLVICAHA 513 Query 378 QSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVA 437 +A L L++++ ++ L I + + + ++ D +L+ Sbjct 514 ATALQLEQVLREREAIRAAVFHEGLSIIERDRAAAYFASEED-----------GAQVLLC 562 Query 438 TSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 + + EG + + +V + L N + Q GR Sbjct 563 SEIGSEGRNFQFASHLVMFDLPFNPDLLEQRIGR 596 >sp|C3KV20|UVRB_CLOB6 UvrABC system protein B OS=Clostridium botulinum (strain 657 / Type Ba4) OX=515621 GN=uvrB PE=3 SV=1 Length=662 Score = 79.5 bits (194), Expect = 5e-14, Method: Composition-based stats. Identities = 37/208 (18%), Positives = 82/208 (39%), Gaps = 39/208 (19%) Query 346 PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIG 405 P +++ L +Q R ++ T T++ A L +L++ +G Sbjct 425 PVKGQIDDLYTSIQETIK--KGFRILVTTLTKKMAEDLTDYLKE--------------MG 468 Query 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLT 460 + + ++ ++I + G ++LV ++ EGLDIP +V L Sbjct 469 VKTRYLHSDIDTIERMKIIHDLRKGEFHVLVGINLLREGLDIPEVALVTILDADKEGFLR 528 Query 461 NEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQA 520 +E S++Q GRA + + ++I +++E +++ ++ Q EY Sbjct 529 SETSLIQTVGRAARNSESKVIMYG--------DVITKSMEKTIKETNR--RRKIQMEYNE 578 Query 521 K--------IRDLQQAALTKRAAQAAQR 540 K I+D+++ A+ + Sbjct 579 KHGIVPKTIIKDIREVIQISDIAEERKE 606 Score = 36.7 bits (83), Expect = 0.90, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 7/62 (11%) Query 11 IMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRM 70 I + + +I TG+GKT A + + +VL + L Q EFR Sbjct 27 IEKGEKFQTLIGV--TGSGKTFTMANIIE-----KAQKPTLVLAHNKTLAAQLCSEFREF 79 Query 71 LD 72 Sbjct 80 FP 81 >sp|Q8DCG1|RAPA_VIBVU RNA polymerase-associated protein RapA OS=Vibrio vulnificus (strain CMCP6) OX=216895 GN=rapA PE=3 SV=1 Length=969 Score = 79.8 bits (195), Expect = 5e-14, Method: Composition-based stats. Identities = 76/480 (16%), Positives = 155/480 (32%), Gaps = 50/480 (10%) Query 5 SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ 62 +Q + +++ G GKT A + + + +++++V L Q Sbjct 156 PHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQVLLGRAERILIVVP-ETLQHQ 214 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELL--QMALTSPEEEEHV 120 E R + +++ A + +L L + Sbjct 215 WLVEMMRRFNLHFSI------FDEERCVEAFAESDNPFDTQQYVLCSLDFLRKSRKRFEQ 268 Query 121 ELT-VFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASK 177 L + L+VVDE HH +D ++ A+ P VL LTA+P + Sbjct 269 ALEAEWDLLVVDEAHHLEWSQDKPSRG-----YQVVEGLAERTPGVLLLTATP------E 317 Query 178 LDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNL-CHRRSQDPFGDLLKKL 236 G +H +L LD+ + +++ L + D + + +L Sbjct 318 QLGRESHFARL-RLLDSDRFYDYAAFVEEEAQYAPVADAITALFSGVKLADEAKNQITEL 376 Query 237 MDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDT 296 + + D + + + + + + RV L R A + Sbjct 377 LSE-QDVEPLFRIIESNADEESKAIARQELIDNLMDRHGTGRV----LFRNTRAAIKGFP 431 Query 297 VRAVDALA-ALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLE 355 VR V L + Y I + E G E+ + Sbjct 432 VRNVHLLPMPIPTQYTTSMRVSGMIGGKLAPEARAMKNLYPEEIFQEFEGEESSWWQFDC 491 Query 356 KI--LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQST 413 ++ L + + S + ++ +A L L++++G IRA + Sbjct 492 RVNWLLEKLKAQRSEKVLVIASRASTALQLEQALREREG-----IRATVF--------HE 538 Query 414 HMTQRDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 M+ ++ + F ++G +L+ + + EG + N +V + L N + Q GR Sbjct 539 GMSILERDKAAAYFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGR 598 >sp|Q3KF38|UVRB_PSEPF UvrABC system protein B OS=Pseudomonas fluorescens (strain Pf0-1) OX=205922 GN=uvrB PE=3 SV=1 Length=671 Score = 79.5 bits (194), Expect = 5e-14, Method: Composition-based stats. Identities = 30/143 (21%), Positives = 59/143 (41%), Gaps = 20/143 (14%) Query 349 PKLEMLEKILQRQFSSSN-SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG 407 P L ++ +L R ++ T T++ A L +L G Sbjct 425 PALTQVDDLLSEITKRVAVEERVLVTTLTKRMAEDLTDYLAD--------------HGVR 470 Query 408 NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNE 462 + + ++ E+I+ + GT ++LV ++ EGLD+P ++V L +E Sbjct 471 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSE 530 Query 463 ISMVQARGRARADQSVYAFVATE 485 S++Q GRA + + A + + Sbjct 531 RSLIQTIGRAARNLNGRAILYAD 553 Score = 37.9 bits (86), Expect = 0.40, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 9/66 (14%) Query 8 WEVIMPALEGKNIIIWLPTGAGKTR-AAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEE 66 E I L + ++ TG+GKT A +A+ +VL L Q E Sbjct 24 VEGIEAGLSHQTLLGV--TGSGKTFSIANVIAQV------QRPTLVLAPNKTLAAQLYGE 75 Query 67 FRRMLD 72 F+ Sbjct 76 FKSFFP 81 >sp|Q4IAS1|DBP4_GIBZE ATP-dependent RNA helicase DBP4 OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=DBP4 PE=3 SV=1 Length=793 Score = 79.5 bits (194), Expect = 5e-14, Method: Composition-based stats. Identities = 46/303 (15%), Positives = 90/303 (30%), Gaps = 25/303 (8%) Query 192 LDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSR 251 L I + Q+ E ++ +++ G K + D + + + Sbjct 124 LGALIISPTRELAAQIFEVLRKVGTKHSFSAGLV---IGGKSLKEEAERLDRMNILVCTP 180 Query 252 KFGTQMYEQ-QVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFY 310 Q ++Q + L + R+ + + DAL+ H R L Sbjct 181 GRMLQHFDQTAGFDANNLQILVLDEADRIMDMGFQSAVDALIEH-LPRERQTLMFSATQS 239 Query 311 HREHVTKTQILCAERRL---LALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNS 367 + L + A L P KL+ L ++ Sbjct 240 KKVSDLARLSLKDPEYVSVHEAAVSATPTNLQQHYIVTPLTEKLDTLYGFIKANLK---- 295 Query 368 PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF 427 + I+F + + + + Q G Q + E+ +F Sbjct 296 SKIIVFLSSGKQVRFVYESFRHLQP------------GIPLLHLHGRQKQGARMEITSRF 343 Query 428 QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEG 486 L AT V G+D P + V++ + + + GR AR + + A + + Sbjct 344 TAAKQTCLFATDVVARGIDFPAVDWVIQADCPEDVDTYIHRVGRTARYESNGRAVLFLDP 403 Query 487 SRE 489 S E Sbjct 404 SEE 406 Score = 59.4 bits (142), Expect = 9e-08, Method: Composition-based stats. Identities = 25/134 (19%), Positives = 47/134 (35%), Gaps = 8/134 (6%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTR---AAAY--VAKRHLETVDGAKVVVLVNRVHLVT 61 Q + AL+GK+I+ TG+GKT + + DG +++ L Sbjct 78 QARAVPLALKGKDILGAAKTGSGKTLAFLIPVLEKLYRAQWTEFDGLGALIISPTRELAA 137 Query 62 QHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVE 121 Q E R++ L ++L+CT + L ++ + Sbjct 138 QIFEVLRKVGTKHSFSAGLVIGGKSLKEEAERLDRMNILVCTPGRM---LQHFDQTAGFD 194 Query 122 LTVFSLIVVDECHH 135 ++V+DE Sbjct 195 ANNLQILVLDEADR 208 >sp|B9DSH1|UVRB_STRU0 UvrABC system protein B OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) OX=218495 GN=uvrB PE=3 SV=1 Length=663 Score = 79.5 bits (194), Expect = 5e-14, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 75/184 (41%), Gaps = 21/184 (11%) Query 349 PKLEMLEKILQRQ-FSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG 407 P + ++ +L + R I T T++ A L +L++ +G Sbjct 431 PTMGQMDDLLGEINLRTERGERTFITTLTKKMAEDLTDYLKE--------------MGVK 476 Query 408 NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNE 462 + + ++ E+I+ + G ++L+ ++ EG+D+P ++V L NE Sbjct 477 VKYMHSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNE 536 Query 463 ISMVQARGR-ARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAK 521 ++Q GR AR Q A + + +++ + A ++ A + + + Sbjct 537 RGLIQTIGRAARNSQGRVIMYADKMTESMQKAIDETARRRQIQMAYNEEHGIVPQTIKKE 596 Query 522 IRDL 525 IRDL Sbjct 597 IRDL 600 >sp|Q56243|UVRB_THET8 UvrABC system protein B OS=Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8) OX=300852 GN=uvrB PE=1 SV=2 Length=665 Score = 79.5 bits (194), Expect = 5e-14, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 68/182 (37%), Gaps = 24/182 (13%) Query 363 SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE 422 ++ R ++ T + A L +L + G + ++Q Sbjct 436 RAARGERTLVTVLTVRMAEELTSFLVE--------------HGIRARYLHHELDAFERQA 481 Query 423 VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGR-ARADQ 476 +I+ + G + LV ++ EGLDIP ++V L +E S++Q GR AR + Sbjct 482 LIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAR 541 Query 477 SVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQ 536 A S ++R + ET +A+ ++ +R +A + + Sbjct 542 GEVWLYADRVSEAMQRAIE----ETNRRRALQEAYNLEHGITPETVRKEVRAVIRPEGYE 597 Query 537 AA 538 A Sbjct 598 EA 599 Score = 34.4 bits (77), Expect = 3.9, Method: Composition-based stats. Identities = 15/47 (32%), Positives = 18/47 (38%), Gaps = 5/47 (11%) Query 26 TGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLD 72 TG GKT A V + G +VL L Q EFR + Sbjct 38 TGTGKTVTMAKVIEAL-----GRPALVLAPNKILAAQLAAEFRELFP 79 >sp|P45818|ROK1_YEAST ATP-dependent RNA helicase ROK1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=ROK1 PE=1 SV=1 Length=564 Score = 79.1 bits (193), Expect = 5e-14, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 59/156 (38%), Gaps = 18/156 (12%) Query 313 EHVTKTQILCAERRLLALFDDRKNELAH-LATHGPENPKLEMLEKILQRQFSSSNSPRGI 371 E + ++ ++ R ++ + + L G E KL + +++Q P I Sbjct 320 EEIAQSIMMDPVRVIIGHKEAANTNIEQKLIFCGNEEGKLIAIRQLVQE---GEFKPPII 376 Query 372 IFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGT 431 IF + A +L L I ++ T + +I++F+ G Sbjct 377 IFLESITRAKAL------YHELMYDRINVDVI--------HAERTALQRDRIIERFKTGE 422 Query 432 LNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 L L+ T V G+D N+V+ Y + + + V Sbjct 423 LWCLICTDVLARGIDFKGVNLVINYDVPGSSQAYVH 458 Score = 53.6 bits (127), Expect = 5e-06, Method: Composition-based stats. Identities = 29/139 (21%), Positives = 56/139 (40%), Gaps = 17/139 (12%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRH----LETVDGAKVVVLVNRVHLVTQ 62 Q E I AL ++++ PTG+GKT A + + G K +++ L Q Sbjct 149 QCECIPVALNNRDVLACGPTGSGKTL-AFLIPLVQQIIDDKQTAGLKGLIISPTKELANQ 207 Query 63 HGEEFRRML-------DGRWTVTTLSGDMGPRAGFGHLA-RCHDLLICTAELLQMALTSP 114 E ++ V LS +G + ++ + +D++I T L + Sbjct 208 IFIECFKLSYKIFLEKKRPLQVALLSKSLGAKLKNKVVSDKKYDIIISTPLRLIDVV--- 264 Query 115 EEEEHVELTVFSLIVVDEC 133 + E ++L+ ++ DE Sbjct 265 -KNEALDLSKVKHLIFDEA 282 >sp|Q4KF19|UVRB_PSEF5 UvrABC system protein B OS=Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5) OX=220664 GN=uvrB PE=3 SV=1 Length=671 Score = 79.5 bits (194), Expect = 5e-14, Method: Composition-based stats. Identities = 30/143 (21%), Positives = 59/143 (41%), Gaps = 20/143 (14%) Query 349 PKLEMLEKILQRQFSSSN-SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAG 407 P L ++ +L R ++ T T++ A L +L G Sbjct 425 PALTQVDDLLSEITKRVAVEERVLVTTLTKRMAEDLTDYLAD--------------HGVR 470 Query 408 NSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNE 462 + + ++ E+I+ + GT ++LV ++ EGLD+P ++V L +E Sbjct 471 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSE 530 Query 463 ISMVQARGRARADQSVYAFVATE 485 S++Q GRA + + A + + Sbjct 531 RSLIQTIGRAARNLNGRAILYAD 553 Score = 36.7 bits (83), Expect = 0.94, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 9/66 (14%) Query 8 WEVIMPALEGKNIIIWLPTGAGKTR-AAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEE 66 E I L + ++ TG+GKT A +A+ +VL L Q E Sbjct 24 VEGIEAGLAHQTLLGV--TGSGKTFSIANVIAQV------QRPTLVLAPNKTLAAQLYGE 75 Query 67 FRRMLD 72 F+ Sbjct 76 FKAFFP 81 >sp|B1KJA5|RAPA_SHEWM RNA polymerase-associated protein RapA OS=Shewanella woodyi (strain ATCC 51908 / MS32) OX=392500 GN=rapA PE=3 SV=1 Length=968 Score = 79.8 bits (195), Expect = 5e-14, Method: Composition-based stats. Identities = 70/454 (15%), Positives = 143/454 (31%), Gaps = 44/454 (10%) Query 27 GAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGP 86 G GKT A + + L T +++V+V L Q E R + +++V + Sbjct 179 GLGKTIEAGLIIHQQLLTGRAERILVIVPD-TLRHQWLVEMLRRFNLKFSVFDEDRCVEA 237 Query 87 RAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHT--HKDTVYNV 144 A + L+IC+ L + + L+VVDE HH +D Sbjct 238 YADSDNPFYTEQLVICS----LELLRKKRRLDQALAADWDLMVVDEAHHLEWTEDAPSRA 293 Query 145 IMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCC 204 + ++ +P VL LTA+P + A +L D + + Sbjct 294 -----YRIVEALSEEIPGVLLLTATP-DQLGHQSHFARLRLLDPDRFYDYEAFLKEETNY 347 Query 205 PQLQEHS-----QQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYE 259 + + +P Q + + D I + + + + Sbjct 348 ADIASTADALAGNEPLSQ-EIIDNLKTQLAEKDITAATDIIQATDADVDQQQAARDALLQ 406 Query 260 QQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQ 319 + + L V R +N A H + K + Sbjct 407 DLLDRHGTGRVLYRNSRASVKGFPTRIFNQYPQKMPAQYVTAARVGAMMNGHLDTAGKVK 466 Query 320 ILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQS 379 + ++ F+ +P+++ L L+ + + +I ++ Sbjct 467 QALSPEKIYQEFESSSASWWKF------DPRVDWLIDFLKE----NRREKVLIIASQAET 516 Query 380 AHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF--QDGTLNLLVA 437 A SL L+ ++G+Q M+ ++ + F + G L+ Sbjct 517 ALSLEEALRTREGIQATVFH-------------EGMSIIERDKAGAYFAQETGGAQALIC 563 Query 438 TSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 + + EG + + ++ + L N + Q GR Sbjct 564 SEIGSEGRNFQFASQLILFDLPLNPDLLEQRIGR 597 >sp|Q5GXX4|UVRB_XANOR UvrABC system protein B OS=Xanthomonas oryzae pv. oryzae (strain KACC10331 / KXO85) OX=291331 GN=uvrB PE=3 SV=1 Length=688 Score = 79.5 bits (194), Expect = 5e-14, Method: Composition-based stats. Identities = 37/220 (17%), Positives = 88/220 (40%), Gaps = 22/220 (10%) Query 337 ELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTV 396 + + P +++ L + + + R ++ T T++ A +L +L + Sbjct 433 LIDPVVEIRPVGTQVDDLMSEIHERIKLGD--RVLVTTLTKRMAENLTEYLGEH------ 484 Query 397 DIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRY 456 IR + L + + ++ E+I+ + G ++LV ++ EGLD+P ++V Sbjct 485 GIRVRYL--------HSDIDTVERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAIL 536 Query 457 G-----LLTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQ 511 L + S++Q GRA + A + + + I+E+ +Q ++ Sbjct 537 DADKEGFLRSTGSLIQTIGRAARNLRGKAILYADKMTRSMQAAIDESDRRREKQVEYNLE 596 Query 512 -KMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVE 550 + + I D+ + A A + + + + + E Sbjct 597 HGITPESVERPISDIMEGAREDAAEKKSGKGRSKSRQVAE 636 Score = 35.9 bits (81), Expect = 1.6, Method: Composition-based stats. Identities = 13/62 (21%), Positives = 22/62 (35%), Gaps = 7/62 (11%) Query 11 IMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRM 70 L + ++ TG+GKT A V ++ +V+ L Q EF+ Sbjct 43 FEAGLAKQTLLGV--TGSGKTYTIANVVQQV-----QKPTLVMAPNKTLAAQLYGEFKSF 95 Query 71 LD 72 Sbjct 96 FP 97 >sp|Q8ZRV8|RAPA_SALTY RNA polymerase-associated protein RapA OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=rapA PE=3 SV=3 Length=968 Score = 79.8 bits (195), Expect = 5e-14, Method: Composition-based stats. Identities = 79/476 (17%), Positives = 150/476 (32%), Gaps = 44/476 (9%) Query 5 SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ 62 +Q + +++ G GKT A + + L + +V+++V L Q Sbjct 156 PHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVP-ETLQHQ 214 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVEL 122 E R + R+ + + + L+IC+ L A + + EH+ Sbjct 215 WLVEMLRRFNLRFALFDDERYTEAQHDAYNPFETEQLVICS---LDFARRNKQRLEHLCD 271 Query 123 TVFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG 180 + L+VVDE HH D Q A+ +P VL LTA+P + G Sbjct 272 AEWDLLVVDEAHHLVWSTDAPSRE-----YMAIEQLAERVPGVLLLTATP------EQLG 320 Query 181 AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI 240 +H +L L + ++ + +P D L +L D I Sbjct 321 MESHFARL--RLLDPNRFHDFEQFVE-EQKNYRPVADAVAMLLAGNKLSNDELNRLGDLI 377 Query 241 HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV 300 + P L + Q + + RV + R + Sbjct 378 GEQDIEPLLQAANSDRDDAQAARDELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTVK 437 Query 301 DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG---PENPKLEMLEKI 357 L + E R + + G +P++E L Sbjct 438 LPLPTQYQTAIKVSGIMGARKSPEDRARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGY 497 Query 358 LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ 417 L S + ++ +A L L++++G++ M+ Sbjct 498 LTSH----RSQKVLVICAKATTALQLEQVLREREGIRAAVFH-------------EGMSI 540 Query 418 RDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 ++ F +D +L+ + + EG + + +V + L N + Q GR Sbjct 541 IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGR 596 >sp|Q5E881|RAPA_ALIF1 RNA polymerase-associated protein RapA OS=Aliivibrio fischeri (strain ATCC 700601 / ES114) OX=312309 GN=rapA PE=3 SV=1 Length=952 Score = 79.8 bits (195), Expect = 5e-14, Method: Composition-based stats. Identities = 73/459 (16%), Positives = 156/459 (34%), Gaps = 54/459 (12%) Query 27 GAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGP 86 G GKT A + + + + +V+++V L Q E R + +++ Sbjct 180 GLGKTIEAGMIIHQQVLSGRAERVLIVVP-ETLQHQWLVEMMRRFNLHFSIF-------D 231 Query 87 RAGFGHLARCHDLLICTAELLQMAL----TSPEEEEHVELTVFSLIVVDECHHTHKDT-- 140 + TA+ + +L S E V + L+VVDE HH + Sbjct 232 EERCVEAYADSENPFDTAQFVLCSLDFIRKSKRRFEQVVEADWDLLVVDEAHHLEWNQTK 291 Query 141 VYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSP 200 ++ A+ P VL LTA+P + G +H +L LD Sbjct 292 PSRE-----YQVIEAIAEETPGVLLLTATP------EQLGHESHFARL-RLLDPDRFYDY 339 Query 201 QNCCPQLQEHSQQPCKQYNLC---HRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQM 257 + +++ QP + + + + +L+ + D + + + Sbjct 340 DAFVEEERQY--QPVADAVTALMSGEKLSNDAKNRITELLSE-QDVEPLFRIIESSAAED 396 Query 258 YEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAA-LQDFYHREHVT 316 + Q + + RV + R + L + + Sbjct 397 EQAQARQELVDNLMDRHGTGRVLFRNTRAAIKGFPQRNLNLMPMPLPSQYATSMRVATMM 456 Query 317 KTQILCAERRLLALF--DDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFT 374 ++ R + L+ + + AT +P++ L ++L+ + + + +I Sbjct 457 GGRMTDEARAMKMLYPEEIFQEFEGDSATWWQFDPRVNWLLELLKE----NRNEKVLIIA 512 Query 375 RTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF--QDGTL 432 +A L L++++G IR + M+ ++ + F ++G Sbjct 513 SRASTALQLEQALREREG-----IRGTVF--------HEGMSIIERDKAAAYFAQEEGGA 559 Query 433 NLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 +L+ + + EG + N +V + L N + Q GR Sbjct 560 QVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGR 598 >sp|P08956|T1RK_ECOLI Type I restriction enzyme EcoKI endonuclease subunit OS=Escherichia coli (strain K12) OX=83333 GN=hsdR PE=1 SV=3 Length=1170 Score = 79.8 bits (195), Expect = 5e-14, Method: Composition-based stats. Identities = 46/266 (17%), Positives = 90/266 (34%), Gaps = 40/266 (15%) Query 1 MELRSYQ---WEVIMPALEG--KNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVN 55 + LR YQ + A+ + I++ + TG GKTR A + R +++ +++ LV+ Sbjct 443 LGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVD 502 Query 56 RVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLAR-CHDLLICTAELLQMALTSP 114 R L Q D R T + + + + T + L + Sbjct 503 RRSLGEQ---ALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVK--RTL 557 Query 115 EEEEHVELTVFSLIVVDECH----------------HTHKDT--VYNVIMSQYLELKLQR 156 + +E + + + IVVDE H + D Y I+ + +K+ Sbjct 558 QSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKI-- 615 Query 157 AQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCK 216 LTA+P + A +D + I + ++Q+ Sbjct 616 --------ALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQI-ITRNAQEGVY 666 Query 217 QYNLCHRRSQDPFGDLLKKLMDQIHD 242 P G+++ ++ D Sbjct 667 LSKGEQVERISPQGEVINDTLEDDQD 692 Score = 52.5 bits (124), Expect = 1e-05, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 61/176 (35%), Gaps = 5/176 (3%) Query 299 AVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEM-LEKI 357 + A + Y + +I + +D ++ G P + Sbjct 655 QIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNE 714 Query 358 LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ 417 L + S + ++F T A ++ L+ + + +I + Sbjct 715 LTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKI---TGDADKDA 771 Query 418 RDQQEVIQKF-QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRA 472 R Q +I +F ++ N++V + G+DIP +V + + I Q +GRA Sbjct 772 RKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRA 827 >sp|B0CE09|UVRB_ACAM1 UvrABC system protein B OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=uvrB PE=3 SV=1 Length=668 Score = 79.5 bits (194), Expect = 5e-14, Method: Composition-based stats. Identities = 40/251 (16%), Positives = 87/251 (35%), Gaps = 30/251 (12%) Query 319 QILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQ 378 +I +E R++ + P +++ L +Q + R +I T T++ Sbjct 398 EIELSENRVVEQVIRPTGVVDPEIFVRPTTGQVDDLLAEIQERVGRQE--RTLITTLTKR 455 Query 379 SAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVAT 438 A L + +++ G + + + E+++ ++G ++L+ Sbjct 456 MAEDLTEYFEER--------------GVRVRYLHSEINAIQRIEILRDLREGVFDVLIGV 501 Query 439 SVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQSVYAFVATEG------- 486 ++ EGLD+P ++V L E S++Q GRA A + + Sbjct 502 NLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAARHVRGQAILYADNLTDSMEK 561 Query 487 --SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQR 544 S +R I A V+K A + ++ + Q ++ Sbjct 562 AISETERRRKIQLAYNKKHGITPQPVKKGSDNAILAFLEVSRRLNTQELEDAYEQADDLP 621 Query 545 QQFPVEHVQLL 555 + E + L Sbjct 622 LESVPELITQL 632 Score = 35.9 bits (81), Expect = 1.3, Method: Composition-based stats. Identities = 13/47 (28%), Positives = 17/47 (36%), Gaps = 5/47 (11%) Query 26 TGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLD 72 TG GKT A V + G ++L + L Q E R Sbjct 40 TGTGKTFTMAKVIEEI-----GKPTLILAHNKTLAAQLCNEIRSFFP 81 >sp|Q7MHE6|RAPA_VIBVY RNA polymerase-associated protein RapA OS=Vibrio vulnificus (strain YJ016) OX=196600 GN=rapA PE=3 SV=1 Length=969 Score = 79.5 bits (194), Expect = 5e-14, Method: Composition-based stats. Identities = 76/480 (16%), Positives = 155/480 (32%), Gaps = 50/480 (10%) Query 5 SYQWEVIMPALEGK--NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ 62 +Q + +++ G GKT A + + + +++++V L Q Sbjct 156 PHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQVLLGRAERILIVVP-ETLQHQ 214 Query 63 HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELL--QMALTSPEEEEHV 120 E R + +++ A + +L L + Sbjct 215 WLVEMMRRFNLHFSI------FDEERCIEAFAESDNPFDTQQYVLCSLDFLRKSRKRFEQ 268 Query 121 ELT-VFSLIVVDECHHT--HKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASK 177 L + L+VVDE HH +D ++ A+ P VL LTA+P + Sbjct 269 ALEADWDLLVVDEAHHLEWSQDKPSRG-----YQVVEGLAERTPGVLLLTATP------E 317 Query 178 LDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNL-CHRRSQDPFGDLLKKL 236 G +H +L LD+ + +++ L + D + + +L Sbjct 318 QLGRESHFARL-RLLDSDRFYDYAAFVEEEAQYAPVADAITALFSGVKLADEAKNQITEL 376 Query 237 MDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDT 296 + + D + + + + + + RV L R A + Sbjct 377 LSE-QDVEPLFRIIESNADEESKAIARQELIDNLMDRHGTGRV----LFRNTRAAIKGFP 431 Query 297 VRAVDALA-ALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLE 355 VR V L + Y I + E G E+ + Sbjct 432 VRNVHLLPMPIPTQYTTSMRVSGMIGGKLAPEARAMKNLYPEEIFQEFEGEESSWWQFDC 491 Query 356 KI--LQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQST 413 ++ L + + S + ++ +A L L++++G IRA + Sbjct 492 RVNWLLEKLKAQRSEKVLVIASRASTALQLEQALREREG-----IRATVF--------HE 538 Query 414 HMTQRDQQEVIQKF--QDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471 M+ ++ + F ++G +L+ + + EG + N +V + L N + Q GR Sbjct 539 GMSILERDKAAAYFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGR 598 >sp|P0CR08|SPB4_CRYNJ ATP-dependent rRNA helicase SPB4 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=SPB4 PE=3 SV=2 Length=725 Score = 79.5 bits (194), Expect = 5e-14, Method: Composition-based stats. Identities = 33/180 (18%), Positives = 60/180 (33%), Gaps = 23/180 (13%) Query 316 TKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTR 375 K ERR + H K L ++L + + + I++ Sbjct 268 RKDGEEPKERRTPMALQNTYLVCRHAE-------KTLQLIRLLLCESTKHERSKFIVYFS 320 Query 376 TRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN-- 433 T + L + L + +S + + ++ + F + Sbjct 321 TCAAVDYFYRILSRLPSLSKFHL----------TSFHGELPPKIRETALSTFTSHPSSHL 370 Query 434 ---LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR-ARADQSVYAFVATEGSRE 489 +L+ T VA G+D +VV++Y T+ + GR ARA + A V RE Sbjct 371 SPAVLLCTDVAARGVDFLDIDVVIQYDAPTDPKTFSHRAGRTARAGRRGKAVVLLGKGRE 430 Score = 52.5 bits (124), Expect = 1e-05, Method: Composition-based stats. Identities = 33/228 (14%), Positives = 69/228 (30%), Gaps = 45/228 (20%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRA-AAYVAKRHLETVDGAK-----VVVLVNRVHLV 60 Q I A++ ++ ++ TG+GKT A V +R + K +V+ L Sbjct 42 QAGTIPRAVKNQDCVVEAVTGSGKTLAFTIPVLERLSRREEPYKKGEIAAIVVAPTRELA 101 Query 61 TQHGEEFRRML-----------------------------------DGRWTVTTLSGDMG 85 TQ F L + + L Sbjct 102 TQIHAVFHHFLSSLIPPESEEETGDVEAHAPPFASSSRSPSPQTPDKPLFPLPMLVTSGT 161 Query 86 PRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVI 145 P + +LI T L L +P V ++ ++V+DE + Sbjct 162 PTPYETFQSTHPSILIGTPGRLAAFLLNPRGLAIVRVSELDVLVLDEADRLLSSPDHRRD 221 Query 146 MSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLD 193 + + + ++ + +A+ + + + +++ NL Sbjct 222 VERIMRHLPKQRRTHL----FSATMTDAVEEMIGLGLRNPVRIVVNLK 265 >sp|C4ZHN1|UVRB_AGARV UvrABC system protein B OS=Agathobacter rectalis (strain ATCC 33656 / DSM 3377 / JCM 17463 / KCTC 5835 / VPI 0990) OX=515619 GN=uvrB PE=3 SV=1 Length=660 Score = 79.1 bits (193), Expect = 5e-14, Method: Composition-based stats. Identities = 36/211 (17%), Positives = 79/211 (37%), Gaps = 23/211 (11%) Query 363 SSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQE 422 ++N + +I T T++ A L ++ + +G + + ++ E Sbjct 439 ETANHHKVLITTLTKRMAEDLTNYMAE--------------LGIRVKYLHSDIDTLERAE 484 Query 423 VIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYG-----LLTNEISMVQARGRARADQS 477 +I+ + ++LV ++ EGLDIP +V L +E S++Q GRA + Sbjct 485 IIRDLRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAARNSE 544 Query 478 VYAFVATEGSRELKRELINE-ALETLMEQAVAAVQKMDQAEYQAKIRDL---QQAALTKR 533 + + + + R I+E +++ + Q +RDL + Sbjct 545 GHVIMYADKITDSMRVAIDETKRRRKVQEEYNEAHGITPQTIQKSVRDLIAISKKVAADE 604 Query 534 AAQAAQRENQRQQFPVEHVQLLCINCMVAVG 564 A E+ ++ +H+ + A Sbjct 605 NALDKDPESMSKKELEKHIADIEKKMKKAAA 635 >sp|A6ZU15|ROK1_YEAS7 ATP-dependent RNA helicase ROK1 OS=Saccharomyces cerevisiae (strain YJM789) OX=307796 GN=ROK1 PE=3 SV=1 Length=564 Score = 79.1 bits (193), Expect = 5e-14, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 59/156 (38%), Gaps = 18/156 (12%) Query 313 EHVTKTQILCAERRLLALFDDRKNELAH-LATHGPENPKLEMLEKILQRQFSSSNSPRGI 371 E + ++ ++ R ++ + + L G E KL + +++Q P I Sbjct 320 EEIAQSIMMDPVRVIIGHKEAANTNIEQKLIFCGNEEGKLIAIRQLVQE---GEFKPPII 376 Query 372 IFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGT 431 IF + A +L L I ++ T + +I++F+ G Sbjct 377 IFLESITRAKAL------YHELMYDRINVDVI--------HAERTALQRDRIIERFKTGE 422 Query 432 LNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQ 467 L L+ T V G+D N+V+ Y + + + V Sbjct 423 LWCLICTDVLARGIDFKGVNLVINYDVPGSSQAYVH 458 Score = 53.3 bits (126), Expect = 5e-06, Method: Composition-based stats. Identities = 29/139 (21%), Positives = 56/139 (40%), Gaps = 17/139 (12%) Query 7 QWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRH----LETVDGAKVVVLVNRVHLVTQ 62 Q E I AL ++++ PTG+GKT A + + G K +++ L Q Sbjct 149 QCECIPVALNNRDVLACGPTGSGKTL-AFLIPLVQQIIDDKQTAGLKGLIISPTKELANQ 207 Query 63 HGEEFRRML-------DGRWTVTTLSGDMGPRAGFGHLA-RCHDLLICTAELLQMALTSP 114 E ++ V LS +G + ++ + +D++I T L + Sbjct 208 IFIECFKLSHKIFLEKKRPLQVALLSKSLGAKLKNKVVSDKKYDIIISTPLRLIDVV--- 264 Query 115 EEEEHVELTVFSLIVVDEC 133 + E ++L+ ++ DE Sbjct 265 -KNEALDLSKVKHLIFDEA 282 Lambda K H a alpha 0.317 0.124 0.331 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0379 0.140 1.90 42.6 43.6 Effective search space used: 75046754048 Database: uniprot_sprot.fasta Posted date: Oct 6, 2024 4:14 PM Number of letters in database: 207,235,166 Number of sequences in database: 572,214 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40