PSIBLAST 2.11.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Stephen F.
Altschul, John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005)
"Protein database searches using compositionally adjusted
substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: uniprot_sprot.fasta
571,609 sequences; 206,878,625 total letters
Results from round 1
Query= sp|P59594|SPIKE_SARS Spike glycoprotein OS=Severe acute respiratory
syndrome coronavirus OX=694009 GN=S PE=1 SV=1
Length=1255
Score E
Sequences producing significant alignments: (Bits) Value
sp|P59594|SPIKE_SARS Spike glycoprotein OS=Severe acute respirato... 2602 0.0
sp|Q0Q475|SPIKE_BC279 Spike glycoprotein OS=Bat coronavirus 279/2... 2062 0.0
sp|Q3I5J5|SPIKE_BCRP3 Spike glycoprotein OS=Bat coronavirus Rp3/2... 2056 0.0
sp|Q3LZX1|SPIKE_BCHK3 Spike glycoprotein OS=Bat coronavirus HKU3 ... 2050 0.0
sp|P0DTC2|SPIKE_SARS2 Spike glycoprotein OS=Severe acute respirat... 2012 0.0
sp|A3EXG6|SPIKE_BCHK9 Spike glycoprotein OS=Bat coronavirus HKU9 ... 631 0.0
sp|A3EXD0|SPIKE_BCHK5 Spike glycoprotein OS=Bat coronavirus HKU5 ... 590 0.0
sp|Q0Q4F2|SPIKE_BC133 Spike glycoprotein OS=Bat coronavirus 133/2... 583 0.0
sp|A3EX94|SPIKE_BCHK4 Spike glycoprotein OS=Bat coronavirus HKU4 ... 571 4e-180
sp|K9N5Q8|SPIKE_MERS1 Spike glycoprotein OS=Middle East respirato... 550 3e-172
sp|P11225|SPIKE_CVMJH Spike glycoprotein OS=Murine coronavirus (s... 525 3e-164
sp|P11224|SPIKE_CVMA5 Spike glycoprotein OS=Murine coronavirus (s... 510 8e-158
sp|P25192|SPIKE_CVBLY Spike glycoprotein OS=Bovine coronavirus (s... 476 1e-144
sp|Q9QAQ8|SPIKE_CVBOK Spike glycoprotein OS=Bovine coronavirus (s... 475 3e-144
sp|Q91A26|SPIKE_CVBEN Spike glycoprotein OS=Bovine coronavirus (s... 474 4e-144
sp|Q9QAR5|SPIKE_CVBLS Spike glycoprotein OS=Bovine coronavirus (s... 473 9e-144
sp|Q8V436|SPIKE_CVBLU Spike glycoprotein OS=Bovine coronavirus (s... 473 1e-143
sp|P25190|SPIKE_CVBF Spike glycoprotein OS=Bovine coronavirus (st... 472 4e-143
sp|P25194|SPIKE_CVBV Spike glycoprotein OS=Bovine coronavirus (st... 471 7e-143
sp|P25191|SPIKE_CVBL9 Spike glycoprotein OS=Bovine coronavirus (s... 469 4e-142
sp|P15777|SPIKE_CVBM Spike glycoprotein OS=Bovine coronavirus (st... 467 2e-141
sp|P25193|SPIKE_CVBQ Spike glycoprotein OS=Bovine coronavirus (st... 466 6e-141
sp|Q0ZME7|SPIKE_CVHN5 Spike glycoprotein OS=Human coronavirus HKU... 457 1e-137
sp|P36334|SPIKE_CVHOC Spike glycoprotein OS=Human coronavirus OC4... 455 3e-137
sp|Q14EB0|SPIKE_CVHN2 Spike glycoprotein OS=Human coronavirus HKU... 455 5e-137
sp|Q8BB25|SPIKE_CVP67 Spike glycoprotein OS=Porcine hemagglutinat... 449 4e-135
sp|Q9IKD1|SPIKE_CVRSD Spike glycoprotein OS=Rat coronavirus (stra... 447 3e-134
sp|Q02385|SPIKE_CVMJC Spike glycoprotein OS=Murine coronavirus (s... 446 8e-134
sp|P22432|SPIKE_CVM4 Spike glycoprotein OS=Murine coronavirus (st... 446 2e-133
sp|Q8JSP8|SPIKE_CVPIA Spike glycoprotein OS=Porcine hemagglutinat... 445 2e-133
sp|Q5MQD0|SPIKE_CVHN1 Spike glycoprotein OS=Human coronavirus HKU... 437 1e-130
sp|P15423|SPIKE_CVH22 Spike glycoprotein OS=Human coronavirus 229... 353 1e-101
sp|P12650|SPIKE_IBVK Spike glycoprotein OS=Avian infectious bronc... 352 2e-101
sp|P12651|SPIKE_IBVM Spike glycoprotein OS=Avian infectious bronc... 348 8e-100
sp|P05135|SPIKE_IBV6 Spike glycoprotein OS=Avian infectious bronc... 346 3e-99
sp|P12722|SPIKE_IBVD2 Spike glycoprotein OS=Avian infectious bron... 345 7e-99
sp|P11223|SPIKE_IBVB Spike glycoprotein OS=Avian infectious bronc... 340 3e-97
sp|Q0Q466|SPIKE_BC512 Spike glycoprotein OS=Bat coronavirus 512/2... 334 5e-94
sp|P24413|SPIKE_CVPRM Spike glycoprotein OS=Porcine respiratory c... 332 8e-94
sp|P27655|SPIKE_CVPR8 Spike glycoprotein OS=Porcine respiratory c... 331 1e-93
sp|Q65984|SPIKE_CVCAK Spike glycoprotein OS=Canine coronavirus (s... 330 2e-92
sp|Q6Q1S2|SPIKE_CVHNL Spike glycoprotein OS=Human coronavirus NL6... 329 2e-92
sp|P10033|SPIKE_FIPV Spike glycoprotein OS=Feline coronavirus (st... 330 2e-92
sp|P07946|SPIKE_CVPPU Spike glycoprotein OS=Porcine transmissible... 328 6e-92
sp|P33470|SPIKE_CVPMI Spike glycoprotein OS=Porcine transmissible... 327 2e-91
sp|Q01977|SPIKE_CVPRT Spike glycoprotein OS=Porcine transmissible... 327 3e-91
sp|Q7T6T3|SPIKE_CVCBG Spike glycoprotein OS=Canine coronavirus (s... 325 7e-91
sp|P18450|SPIKE_CVPFS Spike glycoprotein OS=Porcine transmissible... 323 4e-90
sp|P36300|SPIKE_CVCAI Spike glycoprotein OS=Canine coronavirus (s... 320 5e-89
sp|Q91AV1|SPIKE_PEDV7 Spike glycoprotein OS=Porcine epidemic diar... 310 1e-85
sp|B8F3P6|MUKF_GLAP5 Chromosome partition protein MukF OS=Glaesse... 39.7 0.20
sp|A5UEK6|MUKF_HAEIG Chromosome partition protein MukF OS=Haemoph... 38.9 0.29
sp|Q7VL94|MUKF_HAEDU Chromosome partition protein MukF OS=Haemoph... 37.7 0.67
sp|Q38WX8|TYSY_LATSS Thymidylate synthase OS=Latilactobacillus sa... 37.4 0.79
sp|P45185|MUKF_HAEIN Chromosome partition protein MukF OS=Haemoph... 37.7 0.81
sp|A5UBY0|MUKF_HAEIE Chromosome partition protein MukF OS=Haemoph... 37.4 0.93
sp|O30867|MUKF_HAEAE Chromosome partition protein MukF OS=Haemoph... 37.4 0.94
sp|B7UN08|MUKF_ECO27 Chromosome partition protein MukF OS=Escheri... 37.0 1.2
sp|B5R8K9|MUKF_SALG2 Chromosome partition protein MukF OS=Salmone... 37.0 1.2
sp|Q6GH02|TELL_STAAR TelA-like protein SAR1418 OS=Staphylococcus ... 37.0 1.2
sp|P60108|TELL_STAAN TelA-like protein SA1238 OS=Staphylococcus a... 37.0 1.2
sp|P60107|TELL_STAAM TelA-like protein SAV1406 OS=Staphylococcus ... 37.0 1.2
sp|Q5HG14|TELL_STAAC TelA-like protein SACOL1441 OS=Staphylococcu... 37.0 1.2
sp|Q2YY12|TELL_STAAB TelA-like protein SAB1262 OS=Staphylococcus ... 37.0 1.2
sp|Q2FYM7|TELL_STAA8 TelA-like protein SAOUHSC_01408 OS=Staphyloc... 37.0 1.2
sp|Q2FH32|TELL_STAA3 TelA-like protein SAUSA300_1299 OS=Staphyloc... 37.0 1.2
sp|A8AIF7|MUKF_CITK8 Chromosome partition protein MukF OS=Citroba... 37.0 1.4
sp|Q8NWS1|TELL_STAAW TelA-like protein MW1294 OS=Staphylococcus a... 36.6 1.4
sp|Q6G9F5|TELL_STAAS TelA-like protein SAS1347 OS=Staphylococcus ... 36.6 1.4
sp|Q8N9W4|GG6L2_HUMAN Golgin subfamily A member 6-like protein 2 ... 37.0 1.5
sp|Q8ZQB7|MUKF_SALTY Chromosome partition protein MukF OS=Salmone... 36.6 1.5
sp|B4TRV4|MUKF_SALSV Chromosome partition protein MukF OS=Salmone... 36.6 1.5
sp|B5BBN6|MUKF_SALPK Chromosome partition protein MukF OS=Salmone... 36.6 1.5
sp|C0PXV9|MUKF_SALPC Chromosome partition protein MukF OS=Salmone... 36.6 1.5
sp|Q5PGF9|MUKF_SALPA Chromosome partition protein MukF OS=Salmone... 36.6 1.5
sp|B4T156|MUKF_SALNS Chromosome partition protein MukF OS=Salmone... 36.6 1.5
sp|B4TDQ9|MUKF_SALHS Chromosome partition protein MukF OS=Salmone... 36.6 1.5
sp|B5QZC6|MUKF_SALEP Chromosome partition protein MukF OS=Salmone... 36.6 1.5
sp|B5FQ65|MUKF_SALDC Chromosome partition protein MukF OS=Salmone... 36.6 1.5
sp|Q57R05|MUKF_SALCH Chromosome partition protein MukF OS=Salmone... 36.6 1.5
sp|B5F1S4|MUKF_SALA4 Chromosome partition protein MukF OS=Salmone... 36.6 1.5
sp|Q8Z7Z7|MUKF_SALTI Chromosome partition protein MukF OS=Salmone... 36.6 1.6
sp|A9N7T9|MUKF_SALPB Chromosome partition protein MukF OS=Salmone... 36.6 1.6
sp|A7MZI2|PNP_VIBC1 Polyribonucleotide nucleotidyltransferase OS=... 36.6 1.7
sp|P48479|NIM1_NEUCR G2-specific protein kinase nim-1 OS=Neurospo... 36.6 1.7
sp|A9MHW1|MUKF_SALAR Chromosome partition protein MukF OS=Salmone... 35.8 2.5
sp|B5YT56|MUKF_ECO5E Chromosome partition protein MukF OS=Escheri... 35.8 2.7
sp|Q8XDG2|MUKF_ECO57 Chromosome partition protein MukF OS=Escheri... 35.8 2.7
sp|Q3Z3J9|MUKF_SHISS Chromosome partition protein MukF OS=Shigell... 35.8 2.9
sp|P60294|MUKF_SHIFL Chromosome partition protein MukF OS=Shigell... 35.8 2.9
sp|Q0T6C0|MUKF_SHIF8 Chromosome partition protein MukF OS=Shigell... 35.8 2.9
sp|Q32E42|MUKF_SHIDS Chromosome partition protein MukF OS=Shigell... 35.8 2.9
sp|B1LJU1|MUKF_ECOSM Chromosome partition protein MukF OS=Escheri... 35.8 2.9
sp|B6I8Z4|MUKF_ECOSE Chromosome partition protein MukF OS=Escheri... 35.8 2.9
sp|B7N389|MUKF_ECOLU Chromosome partition protein MukF OS=Escheri... 35.8 2.9
sp|P60293|MUKF_ECOLI Chromosome partition protein MukF OS=Escheri... 35.8 2.9
sp|B1X8M6|MUKF_ECODH Chromosome partition protein MukF OS=Escheri... 35.8 2.9
sp|C4ZQ48|MUKF_ECOBW Chromosome partition protein MukF OS=Escheri... 35.8 2.9
sp|B7M851|MUKF_ECO8A Chromosome partition protein MukF OS=Escheri... 35.8 2.9
sp|B7NM52|MUKF_ECO7I Chromosome partition protein MukF OS=Escheri... 35.8 2.9
sp|B7LE21|MUKF_ECO55 Chromosome partition protein MukF OS=Escheri... 35.8 2.9
sp|A7ZK12|MUKF_ECO24 Chromosome partition protein MukF OS=Escheri... 35.8 2.9
sp|B7LN84|MUKF_ESCF3 Chromosome partition protein MukF OS=Escheri... 35.8 3.0
sp|O67068|SYR_AQUAE Arginine--tRNA ligase OS=Aquifex aeolicus (st... 35.8 3.0
sp|A7ZYM4|MUKF_ECOHS Chromosome partition protein MukF OS=Escheri... 35.8 3.0
sp|Q1RDT5|MUKF_ECOUT Chromosome partition protein MukF OS=Escheri... 35.8 3.1
sp|Q8FJA4|MUKF_ECOL6 Chromosome partition protein MukF OS=Escheri... 35.8 3.1
sp|Q0TJD1|MUKF_ECOL5 Chromosome partition protein MukF OS=Escheri... 35.8 3.1
sp|A1A9J9|MUKF_ECOK1 Chromosome partition protein MukF OS=Escheri... 35.8 3.1
sp|B7MS40|MUKF_ECO81 Chromosome partition protein MukF OS=Escheri... 35.8 3.1
sp|B7MHN1|MUKF_ECO45 Chromosome partition protein MukF OS=Escheri... 35.8 3.1
sp|P75434|Y344_MYCPN UPF0134 protein MPN_344 OS=Mycoplasma pneumo... 35.0 3.4
sp|Q31YS8|MUKF_SHIBS Chromosome partition protein MukF OS=Shigell... 35.4 3.9
sp|A1S7B2|HFLD_SHEAM High frequency lysogenization protein HflD h... 34.7 4.2
sp|B2TUF7|MUKF_SHIB3 Chromosome partition protein MukF OS=Shigell... 35.0 4.8
sp|P0DJF6|VSPC_TRIAB Thrombin-like enzyme chitribrisin OS=Trimere... 34.3 7.1
sp|B1IW09|MUKF_ECOLC Chromosome partition protein MukF OS=Escheri... 34.3 7.3
sp|Q6D445|MUKF_PECAS Chromosome partition protein MukF OS=Pectoba... 34.3 8.1
sp|A3MZU5|MUKF_ACTP2 Chromosome partition protein MukF OS=Actinob... 34.3 8.2
sp|P37535|YAAN_BACSU Uncharacterized protein YaaN OS=Bacillus sub... 34.3 8.7
sp|Q9UL45|BL1S6_HUMAN Biogenesis of lysosome-related organelles c... 33.1 9.5
sp|B0BUD7|MUKF_ACTPJ Chromosome partition protein MukF OS=Actinob... 33.9 10.0
>sp|P59594|SPIKE_SARS Spike glycoprotein OS=Severe acute respiratory
syndrome coronavirus OX=694009 GN=S PE=1 SV=1
Length=1255
Score = 2602 bits (6744), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1255/1255 (100%), Positives = 1255/1255 (100%), Gaps = 0/1255 (0%)
Query 1 MFIFLLFLTLTSGSDLDRCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFL 60
MFIFLLFLTLTSGSDLDRCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFL
Sbjct 1 MFIFLLFLTLTSGSDLDRCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFL 60
Query 61 PFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNS 120
PFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNS
Sbjct 61 PFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNS 120
Query 121 TNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFK 180
TNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFK
Sbjct 121 TNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFK 180
Query 181 HLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITNFRAILTAFSP 240
HLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITNFRAILTAFSP
Sbjct 181 HLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITNFRAILTAFSP 240
Query 241 AQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIY 300
AQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIY
Sbjct 241 AQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIY 300
Query 301 QTSNFRVVPSGDVVRFPNITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTF 360
QTSNFRVVPSGDVVRFPNITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTF
Sbjct 301 QTSNFRVVPSGDVVRFPNITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTF 360
Query 361 FSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCV 420
FSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCV
Sbjct 361 FSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCV 420
Query 421 LAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLND 480
LAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLND
Sbjct 421 LAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLND 480
Query 481 YGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFNGLTGTGVLTP 540
YGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFNGLTGTGVLTP
Sbjct 481 YGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFNGLTGTGVLTP 540
Query 541 SSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQD 600
SSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQD
Sbjct 541 SSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQD 600
Query 601 VNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASY 660
VNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASY
Sbjct 601 VNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASY 660
Query 661 HTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDC 720
HTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDC
Sbjct 661 HTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDC 720
Query 721 NMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFG 780
NMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFG
Sbjct 721 NMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFG 780
Query 781 GFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARDLICAQKFNGL 840
GFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARDLICAQKFNGL
Sbjct 781 GFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARDLICAQKFNGL 840
Query 841 TVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYE 900
TVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYE
Sbjct 841 TVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYE 900
Query 901 NQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLN 960
NQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLN
Sbjct 901 NQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLN 960
Query 961 DILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSK 1020
DILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSK
Sbjct 961 DILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSK 1020
Query 1021 RVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFN 1080
RVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFN
Sbjct 1021 RVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFN 1080
Query 1081 GTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPLQPELDSFKEELDKYFKN 1140
GTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPLQPELDSFKEELDKYFKN
Sbjct 1081 GTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPLQPELDSFKEELDKYFKN 1140
Query 1141 HTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWL 1200
HTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWL
Sbjct 1141 HTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWL 1200
Query 1201 GFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDEDDSEPVLKGVKLHYT 1255
GFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDEDDSEPVLKGVKLHYT
Sbjct 1201 GFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDEDDSEPVLKGVKLHYT 1255
>sp|Q0Q475|SPIKE_BC279 Spike glycoprotein OS=Bat coronavirus 279/2005
OX=389167 GN=S PE=3 SV=1
Length=1241
Score = 2062 bits (5343), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 997/1261 (79%), Positives = 1101/1261 (87%), Gaps = 28/1261 (2%)
Query 1 MFIFLLFLTLTSGSDLDRCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFL 60
+ IF L +L + C P + +SS RGVYY D+IFRSD L+LTQD FL
Sbjct 3 VLIFALLFSLAKAQE--GCGIISRKPQPKMEKVSSSRRGVYYNDDIFRSDVLHLTQDYFL 60
Query 61 PFYSNVTGFHTIN------HTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSV 114
PF SN+T + ++N F NP++ F DG+YFAATEKSNV+RGW+FGS+ +N +QS
Sbjct 61 PFDSNLTQYFSLNIDSNKYTYFDNPILDFGDGVYFAATEKSNVIRGWIFGSSFDNTTQSA 120
Query 115 IIINNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSE 174
II+NNST+++IR CNF LC P + VSK GTQ + ++ +AFNCT++ + +F LD +
Sbjct 121 IIVNNSTHIIIRVCNFNLCKEPMYTVSK--GTQQSSWVYQSAFNCTYDRVEKSFQLDTAP 178
Query 175 KSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITNFRAI 234
K+GNFK LRE+VFKN+DGFL VY+ Y +++ R P+GF+ L+PI KLP GINIT++R +
Sbjct 179 KTGNFKDLREYVFKNRDGFLSVYQTYTAVNLPRGFPAGFSVLRPILKLPFGINITSYRVV 238
Query 235 LTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFE 294
+T FS + +AAY+VG LK TTFML ++ENGTITDAVDCSQNPLAELKC++K+F
Sbjct 239 MTMFSQFNSNFLPESAAYYVGNLKYTTFMLSFNENGTITDAVDCSQNPLAELKCTIKNFN 298
Query 295 IDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSV 354
+ KGIYQTSNFRV P+ +VVRFPNITN CPF +VFNA++FP+VYAWER KIS+CVADY+V
Sbjct 299 VSKGIYQTSNFRVTPTQEVVRFPNITNRCPFDKVFNASRFPNVYAWERTKISDCVADYTV 358
Query 355 LYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPD 414
LYNST FSTFKCYGVS +KL DLCF++VYAD+F+++ +VRQ+APG+TGVIADYNYKLPD
Sbjct 359 LYNSTSFSTFKCYGVSPSKLIDLCFTSVYADTFLIRSSEVRQVAPGETGVIADYNYKLPD 418
Query 415 DFMGCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNC 474
DF GCV+AWNT D Y YR R KL+PFERD+S+ N
Sbjct 419 DFTGCVIAWNTAQQDQG-----QYYYRSYRKEKLKPFERDLSSDE-------------NG 460
Query 475 YWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFNGLTG 534
+ L+ Y FY + + YQ RVVVLSFELLNAPATVCGPKLST L+KNQCVNFNFNGL G
Sbjct 461 VYTLSTYDFYPSIPVEYQATRVVVLSFELLNAPATVCGPKLSTQLVKNQCVNFNFNGLRG 520
Query 535 TGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEV 594
TGVLT SSKRFQ FQQFGRD SDFTDSVRDP+T EILDISPCSFGGVSVITPGTNASSEV
Sbjct 521 TGVLTTSSKRFQSFQQFGRDTSDFTDSVRDPQTLEILDISPCSFGGVSVITPGTNASSEV 580
Query 595 AVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGA 654
AVLYQDVNCTDV T+IHADQLTPAWR+YSTG NVFQTQAGCLIGAEHV+ SYECDIPIGA
Sbjct 581 AVLYQDVNCTDVPTSIHADQLTPAWRVYSTGVNVFQTQAGCLIGAEHVNASYECDIPIGA 640
Query 655 GICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMA 714
GICASYHT S+LRST QKSIVAYTMSLGA++SIAY+NN+IAIPTNFSIS+TTEVMPVS+A
Sbjct 641 GICASYHTASVLRSTGQKSIVAYTMSLGAENSIAYANNSIAIPTNFSISVTTEVMPVSIA 700
Query 715 KTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTP 774
KTSVDC MYICGDS EC+NLLLQYGSFCTQLNRAL+GIA EQD+NT+EVFAQVKQMYKTP
Sbjct 701 KTSVDCTMYICGDSLECSNLLLQYGSFCTQLNRALTGIAIEQDKNTQEVFAQVKQMYKTP 760
Query 775 TLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARDLICA 834
+K FGGFNFSQILPDP KPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDI+ARDLICA
Sbjct 761 AIKDFGGFNFSQILPDPSKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDISARDLICA 820
Query 835 QKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVT 894
QKFNGLTVLPPLLTD+MIAAYTAALVSGTATAGWTFGAG+ALQIPFAMQMAYRFNGIGVT
Sbjct 821 QKFNGLTVLPPLLTDEMIAAYTAALVSGTATAGWTFGAGSALQIPFAMQMAYRFNGIGVT 880
Query 895 QNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGA 954
QNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVN NAQALNTLVKQLSSNFGA
Sbjct 881 QNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNDNAQALNTLVKQLSSNFGA 940
Query 955 ISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSEC 1014
ISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSEC
Sbjct 941 ISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSEC 1000
Query 1015 VLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPRE 1074
VLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPRE
Sbjct 1001 VLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPRE 1060
Query 1075 GVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPLQPELDSFKEEL 1134
GVFV NGTSWFITQRNF+SPQIITTDNTFV+GNCDVVIGIINNTVYDPLQPELDSFKEEL
Sbjct 1061 GVFVSNGTSWFITQRNFYSPQIITTDNTFVAGNCDVVIGIINNTVYDPLQPELDSFKEEL 1120
Query 1135 DKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKW 1194
DKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKW
Sbjct 1121 DKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKW 1180
Query 1195 PWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDEDDSEPVLKGVKLHY 1254
PWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDEDDSEPVLKGVKLHY
Sbjct 1181 PWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDEDDSEPVLKGVKLHY 1240
Query 1255 T 1255
T
Sbjct 1241 T 1241
>sp|Q3I5J5|SPIKE_BCRP3 Spike glycoprotein OS=Bat coronavirus Rp3/2004
OX=349344 GN=S PE=1 SV=1
Length=1241
Score = 2056 bits (5328), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 992/1261 (79%), Positives = 1095/1261 (87%), Gaps = 26/1261 (2%)
Query 1 MFIFLLFLTLTSGSDLDRCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFL 60
M I +L + + C P Q +SS RGVYY D+IFRS+ L+LTQD FL
Sbjct 1 MKILILAFLASLAKAQEGCGIISRKPQPKMAQVSSSRRGVYYNDDIFRSNVLHLTQDYFL 60
Query 61 PFYSNVTGFHTIN------HTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSV 114
PF SN+T + ++N F NP++ F DG+YFAATEKSNV+RGW+FGST +N +QS
Sbjct 61 PFDSNLTQYFSLNVDSDRFTYFDNPILDFGDGVYFAATEKSNVIRGWIFGSTFDNTTQSA 120
Query 115 IIINNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSE 174
+I+NNST+++IR CNF LC P + VS+ G Q + ++ +AFNCT++ + +F LD +
Sbjct 121 VIVNNSTHIIIRVCNFNLCKEPMYTVSR--GAQQSSWVYQSAFNCTYDRVEKSFQLDTAP 178
Query 175 KSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITNFRAI 234
K+GNFK LRE+VFKN+DGFL VY+ Y +++ R LP GF+ L+PI KLP GINIT++R +
Sbjct 179 KTGNFKDLREYVFKNRDGFLSVYQTYTAVNLPRGLPIGFSVLRPILKLPFGINITSYRVV 238
Query 235 LTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFE 294
+ FS + +AAY+VG LK TTFML ++ENGTIT+A+DC+QNPLAELKC++K+F
Sbjct 239 MAMFSQTTSNFLPESAAYYVGNLKYTTFMLSFNENGTITNAIDCAQNPLAELKCTIKNFN 298
Query 295 IDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSV 354
+ KGIYQTSNFRV P+ +V+RFPNITN CPF +VFNAT+FP+VYAWER KIS+CVADY+V
Sbjct 299 VSKGIYQTSNFRVSPTQEVIRFPNITNRCPFDKVFNATRFPNVYAWERTKISDCVADYTV 358
Query 355 LYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPD 414
LYNST FSTFKCYGVS +KL DLCF++VYAD+F+++ +VRQ+APG+TGVIADYNYKLPD
Sbjct 359 LYNSTSFSTFKCYGVSPSKLIDLCFTSVYADTFLIRSSEVRQVAPGETGVIADYNYKLPD 418
Query 415 DFMGCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNC 474
DF GCV+AWNT D Y YR R KL+PFERD+S+ N
Sbjct 419 DFTGCVIAWNTAKQDQG-----QYYYRSHRKTKLKPFERDLSSDE-------------NG 460
Query 475 YWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFNGLTG 534
L+ Y FY + + YQ RVVVLSFELLNAPATVCGPKLST L+KNQCVNFNFNGL G
Sbjct 461 VRTLSTYDFYPSVPVAYQATRVVVLSFELLNAPATVCGPKLSTQLVKNQCVNFNFNGLKG 520
Query 535 TGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEV 594
TGVLT SSKRFQ FQQFGRD SDFTDSVRDP+T EILDISPCSFGGVSVITPGTNASSEV
Sbjct 521 TGVLTESSKRFQSFQQFGRDTSDFTDSVRDPQTLEILDISPCSFGGVSVITPGTNASSEV 580
Query 595 AVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGA 654
AVLYQDVNCTDV AIHADQLTPAWR+YSTG NVFQTQAGCLIGAEHV+ SYECDIPIGA
Sbjct 581 AVLYQDVNCTDVPAAIHADQLTPAWRVYSTGTNVFQTQAGCLIGAEHVNASYECDIPIGA 640
Query 655 GICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMA 714
GICASYHT S LRS QKSIVAYTMSLGA++SIAY+NN+IAIPTNFSIS+TTEVMPVSMA
Sbjct 641 GICASYHTASTLRSVGQKSIVAYTMSLGAENSIAYANNSIAIPTNFSISVTTEVMPVSMA 700
Query 715 KTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTP 774
KTSVDC MYICGDS EC+NLLLQYGSFCTQLNRALSGIA EQD+NT+EVFAQVKQMYKTP
Sbjct 701 KTSVDCTMYICGDSLECSNLLLQYGSFCTQLNRALSGIAIEQDKNTQEVFAQVKQMYKTP 760
Query 775 TLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARDLICA 834
+K FGGFNFSQILPDP KPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDI+ARDLICA
Sbjct 761 AIKDFGGFNFSQILPDPSKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDISARDLICA 820
Query 835 QKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVT 894
QKFNGLTVLPPLLTD+MIAAYTAALVSGTATAGWTFGAG+ALQIPFAMQMAYRFNGIGVT
Sbjct 821 QKFNGLTVLPPLLTDEMIAAYTAALVSGTATAGWTFGAGSALQIPFAMQMAYRFNGIGVT 880
Query 895 QNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGA 954
QNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGA
Sbjct 881 QNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGA 940
Query 955 ISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSEC 1014
ISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSEC
Sbjct 941 ISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSEC 1000
Query 1015 VLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPRE 1074
VLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPRE
Sbjct 1001 VLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPRE 1060
Query 1075 GVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPLQPELDSFKEEL 1134
GVFV NGTSWFITQRNF+SPQIITTDNTFV+G+CDVVIGIINNTVYDPLQPELDSFKEEL
Sbjct 1061 GVFVSNGTSWFITQRNFYSPQIITTDNTFVAGSCDVVIGIINNTVYDPLQPELDSFKEEL 1120
Query 1135 DKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKW 1194
DKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKW
Sbjct 1121 DKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKW 1180
Query 1195 PWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDEDDSEPVLKGVKLHY 1254
PWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDEDDSEPVLKGVKLHY
Sbjct 1181 PWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDEDDSEPVLKGVKLHY 1240
Query 1255 T 1255
T
Sbjct 1241 T 1241
>sp|Q3LZX1|SPIKE_BCHK3 Spike glycoprotein OS=Bat coronavirus HKU3
OX=442736 GN=S PE=3 SV=1
Length=1242
Score = 2050 bits (5312), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 990/1261 (79%), Positives = 1102/1261 (87%), Gaps = 27/1261 (2%)
Query 1 MFIFLLFLTLTSGSDLDRCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFL 60
+ IF L + C P Q +SS RGVYY D+IFRSD L+LTQD FL
Sbjct 3 ILIFAFLANLAKAQE--GCGIISRKPQPKMAQVSSSRRGVYYNDDIFRSDVLHLTQDYFL 60
Query 61 PFYSNVTGFHTIN------HTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSV 114
PF SN+T + ++N F NP++ F DG+YFAATEKSNV+RGW+FGS+ +N +QS
Sbjct 61 PFDSNLTQYFSLNVDSDRYTYFDNPILDFGDGVYFAATEKSNVIRGWIFGSSFDNTTQSA 120
Query 115 IIINNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSE 174
+I+NNST+++IR CNF LC P + VS+ GTQ + ++ +AFNCT++ + +F LD +
Sbjct 121 VIVNNSTHIIIRVCNFNLCKEPMYTVSR--GTQQNAWVYQSAFNCTYDRVEKSFQLDTTP 178
Query 175 KSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITNFRAI 234
K+GNFK LRE+VFKN+DGFL VY+ Y +++ R LP+GF+ LKPI KLP GINIT++R +
Sbjct 179 KTGNFKDLREYVFKNRDGFLSVYQTYTAVNLPRGLPTGFSVLKPILKLPFGINITSYRVV 238
Query 235 LTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFE 294
+ FS + +AAY+VG LK +TFML+++ENGTITDAVDCSQNPLAELKC++K+F
Sbjct 239 MAMFSQTTSNFLPESAAYYVGNLKYSTFMLRFNENGTITDAVDCSQNPLAELKCTIKNFN 298
Query 295 IDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSV 354
+DKGIYQTSNFRV P+ +V+RFPNITN CPF +VFNAT+FP+VYAWER KIS+CVADY+V
Sbjct 299 VDKGIYQTSNFRVSPTQEVIRFPNITNRCPFDKVFNATRFPNVYAWERTKISDCVADYTV 358
Query 355 LYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPD 414
LYNST FSTFKCYGVS +KL DLCF++VYAD+F+++ +VRQ+APG+TGVIADYNYKLPD
Sbjct 359 LYNSTSFSTFKCYGVSPSKLIDLCFTSVYADTFLIRSSEVRQVAPGETGVIADYNYKLPD 418
Query 415 DFMGCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNC 474
DF GCV+AWNT D TGNY YR R KL+PFERD+S S DG N
Sbjct 419 DFTGCVIAWNTAKHD---TGNY--YYRSHRKTKLKPFERDLS----SDDG--------NG 461
Query 475 YWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFNGLTG 534
+ L+ Y F + YQ RVVVLSFELLNAPATVCGPKLST+L+KNQCVNFNFNGL G
Sbjct 462 VYTLSTYDFNPNVPVAYQATRVVVLSFELLNAPATVCGPKLSTELVKNQCVNFNFNGLKG 521
Query 535 TGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEV 594
TGVLT SSKRFQ FQQFGRD SDFTDSVRDP+T EILDISPCSFGGVSVITPGTNASSEV
Sbjct 522 TGVLTSSSKRFQSFQQFGRDTSDFTDSVRDPQTLEILDISPCSFGGVSVITPGTNASSEV 581
Query 595 AVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGA 654
AVLYQDVNCTDV TAI ADQLTPAWR+YSTG NVFQTQAGCLIGAEHV+ SYECDIPIGA
Sbjct 582 AVLYQDVNCTDVPTAIRADQLTPAWRVYSTGVNVFQTQAGCLIGAEHVNASYECDIPIGA 641
Query 655 GICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMA 714
GICASYHT S+LRST QKSIVAYTMSLGA++SIAY+NN+IAIPTNFSIS+TTEVMPVSMA
Sbjct 642 GICASYHTASVLRSTGQKSIVAYTMSLGAENSIAYANNSIAIPTNFSISVTTEVMPVSMA 701
Query 715 KTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTP 774
KT+VDC MYICGDS EC+NLLLQYGSFCTQLNRAL+GIA EQD+NT+EVFAQVKQMYKTP
Sbjct 702 KTAVDCTMYICGDSLECSNLLLQYGSFCTQLNRALTGIAIEQDKNTQEVFAQVKQMYKTP 761
Query 775 TLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARDLICA 834
+K FGGFNFSQILPDP KPTKRSFIEDLLFNKVTLADAGFMKQYG+CLGD++ARDLICA
Sbjct 762 AIKDFGGFNFSQILPDPSKPTKRSFIEDLLFNKVTLADAGFMKQYGDCLGDVSARDLICA 821
Query 835 QKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVT 894
QKFNGLTVLPPLLTD+M+AAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVT
Sbjct 822 QKFNGLTVLPPLLTDEMVAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVT 881
Query 895 QNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGA 954
QNVLYENQK IANQFN AI +IQESL++T++ALGKLQDVVNQNAQALNTLVKQLSSNFGA
Sbjct 882 QNVLYENQKLIANQFNSAIGKIQESLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGA 941
Query 955 ISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSEC 1014
ISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSEC
Sbjct 942 ISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSEC 1001
Query 1015 VLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPRE 1074
VLGQSKRVDFCGKGYHLMSFPQ+APHGVVFLHVTYVPSQE+NFTTAPAICHEGKAYFPRE
Sbjct 1002 VLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPSQEKNFTTAPAICHEGKAYFPRE 1061
Query 1075 GVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPLQPELDSFKEEL 1134
GVFV NGTSWFITQRNF+SPQ+ITTDNTFVSGNCDVVIGIINNTVYDPLQPELDSFKEEL
Sbjct 1062 GVFVSNGTSWFITQRNFYSPQLITTDNTFVSGNCDVVIGIINNTVYDPLQPELDSFKEEL 1121
Query 1135 DKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKW 1194
DKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKW
Sbjct 1122 DKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKW 1181
Query 1195 PWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDEDDSEPVLKGVKLHY 1254
PWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDEDDSEPVLKGVKLHY
Sbjct 1182 PWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDEDDSEPVLKGVKLHY 1241
Query 1255 T 1255
T
Sbjct 1242 T 1242
>sp|P0DTC2|SPIKE_SARS2 Spike glycoprotein OS=Severe acute respiratory
syndrome coronavirus 2 OX=2697049 GN=S PE=1 SV=1
Length=1273
Score = 2012 bits (5213), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 971/1277 (76%), Positives = 1109/1277 (87%), Gaps = 26/1277 (2%)
Query 1 MFIFLLFLTLTSGSDLDRCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFL 60
MF+FL+ L L S ++ T P YT S RGVYYPD++FRS L+ TQDLFL
Sbjct 1 MFVFLVLLPLVSSQCVNLTTRTQ--LPPAYTN--SFTRGVYYPDKVFRSSVLHSTQDLFL 56
Query 61 PFYSNVTGFHTIN-------HTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQS 113
PF+SNVT FH I+ F NPV+PF DG+YFA+TEKSN++RGW+FG+T+++K+QS
Sbjct 57 PFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQS 116
Query 114 VIIINNSTNVVIRACNFELCDNPFFAV----SKPMGTQTHTMIFDNAFNCTFEYISDAFS 169
++I+NN+TNVVI+ C F+ C++PF V + ++ ++ +A NCTFEY+S F
Sbjct 117 LLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFL 176
Query 170 LDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINIT 229
+D+ K GNFK+LREFVFKN DG+ +Y + PI++VRDLP GF+ L+P+ LP+GINIT
Sbjct 177 MDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINIT 236
Query 230 NFRAIL----TAFSPAQDI--WGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPL 283
F+ +L + +P W AAAY+VGYL+P TF+LKY+ENGTITDAVDC+ +PL
Sbjct 237 RFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPL 296
Query 284 AELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFNATKFPSVYAWERK 343
+E KC++KSF ++KGIYQTSNFRV P+ +VRFPNITNLCPFGEVFNAT+F SVYAW RK
Sbjct 297 SETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRK 356
Query 344 KISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTG 403
+ISNCVADYSVLYNS FSTFKCYGVS TKLNDLCF+NVYADSFV++GD+VRQIAPGQTG
Sbjct 357 RISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTG 416
Query 404 VIADYNYKLPDDFMGCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPD 463
IADYNYKLPDDF GCV+AWN+ N+D+ GNYNY YR R L+PFERDIS +
Sbjct 417 KIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAG 476
Query 464 GKPCTP-PALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKN 522
PC NCY+PL YGF T G+GYQPYRVVVLSFELL+APATVCGPK ST+L+KN
Sbjct 477 STPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKN 536
Query 523 QCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVS 582
+CVNFNFNGLTGTGVLT S+K+F PFQQFGRD++D TD+VRDP+T EILDI+PCSFGGVS
Sbjct 537 KCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVS 596
Query 583 VITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIGAEHV 642
VITPGTN S++VAVLYQDVNCT+V AIHADQLTP WR+YSTG+NVFQT+AGCLIGAEHV
Sbjct 597 VITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHV 656
Query 643 DTSYECDIPIGAGICASYHTVS----LLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPT 698
+ SYECDIPIGAGICASY T + RS + +SI+AYTMSLGA++S+AYSNN+IAIPT
Sbjct 657 NNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPT 716
Query 699 NFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDR 758
NF+IS+TTE++PVSM KTSVDC MYICGDSTEC+NLLLQYGSFCTQLNRAL+GIA EQD+
Sbjct 717 NFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDK 776
Query 759 NTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQ 818
NT+EVFAQVKQ+YKTP +K FGGFNFSQILPDP KP+KRSFIEDLLFNKVTLADAGF+KQ
Sbjct 777 NTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQ 836
Query 819 YGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQI 878
YG+CLGDI ARDLICAQKFNGLTVLPPLLTD+MIA YT+AL++GT T+GWTFGAGAALQI
Sbjct 837 YGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQI 896
Query 879 PFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNA 938
PFAMQMAYRFNGIGVTQNVLYENQK IANQFN AI +IQ+SL++T++ALGKLQDVVNQNA
Sbjct 897 PFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNA 956
Query 939 QALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAA 998
QALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAA
Sbjct 957 QALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAA 1016
Query 999 EIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFT 1058
EIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQ+APHGVVFLHVTYVP+QE+NFT
Sbjct 1017 EIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFT 1076
Query 1059 TAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNT 1118
TAPAICH+GKA+FPREGVFV NGT WF+TQRNF+ PQIITTDNTFVSGNCDVVIGI+NNT
Sbjct 1077 TAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNT 1136
Query 1119 VYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNES 1178
VYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNES
Sbjct 1137 VYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNES 1196
Query 1179 LIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKF 1238
LIDLQELGKYEQYIKWPWY+WLGFIAGLIAIVMVTI+LCCMTSCCSCLKG CSCGSCCKF
Sbjct 1197 LIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKF 1256
Query 1239 DEDDSEPVLKGVKLHYT 1255
DEDDSEPVLKGVKLHYT
Sbjct 1257 DEDDSEPVLKGVKLHYT 1273
>sp|A3EXG6|SPIKE_BCHK9 Spike glycoprotein OS=Bat coronavirus HKU9
OX=694006 GN=S PE=1 SV=1
Length=1274
Score = 631 bits (1627), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/1287 (32%), Positives = 648/1287 (50%), Gaps = 120/1287 (9%)
Query 29 NYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTI--------NHTFGNPV 80
NYT + + V PD L Q+LF+ SN + + +
Sbjct 34 NYTSIKAKVSNVLLPDPYIAYSGQTLRQNLFMADMSNTILYPVTPPANGANGGFIYNTSI 93
Query 81 IPFKDGIYF-------AATEKSNVVR--GWVFGSTMNNKSQSVIII-------------N 118
IP G++ A+ ++ G FG T N +++I+
Sbjct 94 IPVSAGLFVNTWMYRQPASSRAYCQEPFGVAFGDTFENDRIAILIMAPDNLGSWSAVAPR 153
Query 119 NSTNVVIRAC-NFELCDNPFFAVSKPMGT-QTHTMIFDNAFNCTFEYISDAFSLDVSEKS 176
N TN+ + C N LC NP F P G+ + D++ +C ++++ FS+++S
Sbjct 154 NQTNIYLLVCSNATLCINPGFNRWGPAGSFIAPDALVDHSNSC---FVNNTFSVNISTSR 210
Query 177 GNFKHLREFVFKNKDGFLYVYKGYQPI-DVVRDLPSGFNTLKPIFKLPLGINITN---FR 232
+ F+FK+ D +Y + G+ P + G + + LP+G N+ F+
Sbjct 211 ISLA----FLFKDGDLLIY-HSGWLPTSNFEHGFSRGSHPMTYFMSLPVGGNLPRAQFFQ 265
Query 233 AIL--TAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSV 290
+I+ A + V +L ++ Y NG++ +A DC+ + EL C
Sbjct 266 SIVRSNAIDKGDGMCTNFDVNLHVAHLINRDLLVSYFNNGSVANAADCADSAAEELYCVT 325
Query 291 KSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLC-PFGEVFNATKFPSVYAWERKKISNCV 349
SF+ G+Y S +R +G VR + C P V P V W R + +CV
Sbjct 326 GSFDPPTGVYPLSRYRAQVAG-FVRVTQRGSYCTPPYSVLQDPPQPVV--WRRYMLYDCV 382
Query 350 ADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYN 409
D++V+ +S +CYGVS +L +C+ +V D + + + + YN
Sbjct 383 FDFTVVVDSLPTHQLQCYGVSPRRLASMCYGSVTLDVMRINETHLNNLFNRVPDTFSLYN 442
Query 410 YKLPDDFMGCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTP 469
Y LPD+F GC+ A+ ST Y R+ P P G+
Sbjct 443 YALPDNFYGCLHAFYLN-----STAPYAVANRF----------------PIKPGGRQSNS 481
Query 470 PALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNF 529
++ Y ++ Y + V++ + VC T +I ++CV +N
Sbjct 482 AFIDTVINAAHYSPFSYV------YGLAVITLKPAAGSKLVCPVANDTVVITDRCVQYNL 535
Query 530 NGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDS-----VRDPKTSEILDISPCSFGGVSVI 584
G TGTGVL+ ++ P D FT S + S I PC VSV
Sbjct 536 YGYTGTGVLSKNTSLVIP------DGKVFTASSTGTIIGVSINSTTYSIMPCVTVPVSV- 588
Query 585 TPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIGAEHVDT 644
G + + E A+L+ ++C+ S A+ + ++ W +T + F T +GC++ E +T
Sbjct 589 --GYHPNFERALLFNGLSCSQRSRAV-TEPVSVLWSASATAQDAFDTPSGCVVNVELRNT 645
Query 645 SY--ECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTI---AIPTN 699
+ C +PIG +C +++ + S + D+S A + +PTN
Sbjct 646 TIVNTCAMPIGNSLCFINGSIATANADSLPRLQLVNYDPLYDNSTATPMTPVYWVKVPTN 705
Query 700 FSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRN 759
F++S T E + + K ++DC Y+CGDS+ C N+LL YG+FC +N+ALS ++ D
Sbjct 706 FTLSATEEYIQTTAPKITIDCARYLCGDSSRCLNVLLHYGTFCNDINKALSRVSTILDS- 764
Query 760 TREVFAQVKQMY-----KTPTLKYFGGFNFSQIL----PDPLKPTKRSFIEDLLFNKVTL 810
+ + VK++ + T + G +NF+ ++ P+ T RS DLL++KV +
Sbjct 765 --ALLSLVKELSINTRDEVTTFSFDGDYNFTGLMGCLGPNCGATTYRSAFSDLLYDKVRI 822
Query 811 ADAGFMKQYGECL-----GDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTAT 865
D GFM+ Y +C+ G I RDL+C Q +NG+ VLPP+++ M A YT+ LV A+
Sbjct 823 TDPGFMQSYQKCIDSQWGGSI--RDLLCTQTYNGIAVLPPIVSPAMQALYTSLLVGAVAS 880
Query 866 AGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTST 925
+G+TFG +A IPFA Q+ +R NGIGVT VL ENQK IA+ FN A+ IQ+ T TS
Sbjct 881 SGYTFGITSAGVIPFATQLQFRLNGIGVTTQVLVENQKLIASSFNNALVNIQKGFTETSI 940
Query 926 ALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQS 985
AL K+QDV+NQ+A L+TLV QL ++FGAISS +N+I SRL+ + A ++DRLI GR+
Sbjct 941 ALSKMQDVINQHAAQLHTLVVQLGNSFGAISSSINEIFSRLEGLAANAEVDRLINGRMMV 1000
Query 986 LQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFL 1045
L TYVTQ LI+A+E +A LAA K+SECV QS R DFCG G H++S PQ AP+GV+F+
Sbjct 1001 LNTYVTQLLIQASEAKAQNALAAQKISECVKAQSLRNDFCGNGTHVLSIPQLAPNGVLFI 1060
Query 1046 HVTYVPSQERNFTTAPAICHEGKAYFPREGVFVF--NGTSWFITQRNFFSPQIITTDNTF 1103
H Y P++ T+ +CH G Y PR+G+FV N W T F++P I+ NT
Sbjct 1061 HYAYTPTEYAFVQTSAGLCHNGTGYAPRQGMFVLPNNTNMWHFTTMQFYNPVNISASNTQ 1120
Query 1104 VSGNCDVVIGIINNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQK 1163
V +C V +N TV +P P F++E DK++KN ++ + + + N S V++
Sbjct 1121 VLTSCSVNYTSVNYTVLEPSVPGDYDFQKEFDKFYKNLSTIFNNTFNPNDFNFSTVDVTA 1180
Query 1164 EIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCC 1223
+I L++V LN+S IDL++L YE+ IKWPWYVWL IAG++ +V+ I+L CMT+CC
Sbjct 1181 QIKSLHDVVNQLNQSFIDLKKLNVYEKTIKWPWYVWLAMIAGIVGLVLAVIMLMCMTNCC 1240
Query 1224 SCLKGACSCGSCC-KFDE-DDSEPVLK 1248
SC KG C C CC +D DD P ++
Sbjct 1241 SCFKGMCDCRRCCGSYDSYDDVYPAVR 1267
>sp|A3EXD0|SPIKE_BCHK5 Spike glycoprotein OS=Bat coronavirus HKU5
OX=694008 GN=S PE=1 SV=1
Length=1352
Score = 590 bits (1521), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/1148 (36%), Positives = 602/1148 (52%), Gaps = 89/1148 (8%)
Query 152 IFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPS 211
++ + NCTF Y +++ E + F + ++ G +++Y + +V R+
Sbjct 238 VYFDLINCTFRY---NYTITEDENAEWFG-----ITQDTQG-VHLYSSRKE-NVFRNNMF 287
Query 212 GFNTLKPIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGT 271
F TL P+++ L + R+I + F+ + W AA+++ L P T++L +D G
Sbjct 288 HFATL-PVYQKILYYTVIP-RSIRSPFND-RKAW----AAFYIYKLHPLTYLLNFDVEGY 340
Query 272 ITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFNA 331
IT AVDC + LA+L+CS +SFE++ G+Y S+F P G+ + T C F +
Sbjct 341 ITKAVDCGYDDLAQLQCSYESFEVETGVYSVSSFEASPRGEFIE-QATTQECDFTPMLTG 399
Query 332 TKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKG 391
T P +Y ++R +NC + + L + S F C+ VS + L C+S++ D F
Sbjct 400 TP-PPIYNFKRLVFTNCNYNLTKLLSLFQVSEFSCHQVSPSSLATGCYSSLTVDYFAYST 458
Query 392 DDVRQIAPGQTGVIADYNYKLPDDFMGC-VLAWNTRNIDA-TSTGNYNYK---YRYLRHG 446
D + PG G I +NYK C VLA +N+ T NY Y Y+ +G
Sbjct 459 DMSSYLQPGSAGAIVQFNYKQDFSNPTCRVLATVPQNLTTITKPSNYAYLTECYKTSAYG 518
Query 447 KLRPFERDISNVPFSPDGK--PCTPPA---LNCYWPLNDYGFYTTTGIGYQPYRVVVLSF 501
K N ++ G PC A + + + G TTTG Y + ++F
Sbjct 519 K---------NYLYNAPGAYTPCLSLASRGFSTKYQSHSDGELTTTGYIYPVTGNLQMAF 569
Query 502 ELLNAPATVCGPKLSTDLIKNQ---------CVNFNFNGLTGTGVLTPSSKRFQPFQQFG 552
+ T ++N CV ++ +G+TG GV + Q+F
Sbjct 570 IISVQYGTDTNSVCPMQALRNDTSIEDKLDVCVEYSLHGITGRGVFHNCTSVGLRNQRFV 629
Query 553 RDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHA 612
D D + PC VSVI AS+ A L+ V C+ V+T +
Sbjct 630 YDTFDNLVGYHS-DNGNYYCVRPCVSVPVSVIY--DKASNSHATLFGSVACSHVTTMMSQ 686
Query 613 -DQLTPAWRIYSTGNNVFQTQAGCLIGAEHVDTSY---ECDIPIGAGICASYHTVS--LL 666
++T + T QT GC +G +++S EC +P+G +CA T S +
Sbjct 687 FSRMTKTNLLARTTPGPLQTTVGCAMG--FINSSMVVDECQLPLGQSLCAIPPTTSSRVR 744
Query 667 RSTSQKSIV--AYTMSLGADSSIAYSNNT---IAIPTNFSISITTEVMPVSMAKTSVDCN 721
R+TS S V T++ + ++A N+T +A+PTNF+ +T E + ++ K +VDC
Sbjct 745 RATSGASDVFQIATLNFTSPLTLAPINSTGFVVAVPTNFTFGVTQEFIETTIQKITVDCK 804
Query 722 MYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGG 781
Y+C +C +LL +YG FC+++N+AL G QD + +F+ +K P G
Sbjct 805 QYVCNGFKKCEDLLKEYGQFCSKINQALHGANLRQDESIANLFSSIKTQNTQPLQAGLNG 864
Query 782 -FNFSQI-LPDPLKPTK--RSFIEDLLFNKVTLADAGFMKQYGECL--GDINARDLICAQ 835
FN + + +P + RS IEDLLFNKVT+AD G+M+ Y EC+ G +ARDLICAQ
Sbjct 865 DFNLTMLQIPQVTTGERKYRSTIEDLLFNKVTIADPGYMQGYDECMQQGPQSARDLICAQ 924
Query 836 KFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQ 895
G VLPPL M AAYT++L+ A A WT G + IPFA + YR NG+G+TQ
Sbjct 925 YVAGYKVLPPLYDPYMEAAYTSSLLGSIAGASWTAGLSSFAAIPFAQSIFYRLNGVGITQ 984
Query 896 NVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAI 955
VL ENQK IAN+FN+A+ +Q TTT+ A K+QD VN NA AL+ L +LS+ FGAI
Sbjct 985 QVLSENQKIIANKFNQALGAMQTGFTTTNLAFNKVQDAVNANAMALSKLAAELSNTFGAI 1044
Query 956 SSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECV 1015
SS ++DIL+RLD VE E QIDRLI GRL SL +V QQL+R SA LA K++ECV
Sbjct 1045 SSSISDILARLDTVEQEAQIDRLINGRLTSLNAFVAQQLVRTEAAARSAQLAQDKVNECV 1104
Query 1016 LGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHE---GKAYFP 1072
QSKR FCG G H++SF AP+G+ F HV Y P+ N T A +C+ K P
Sbjct 1105 KSQSKRNGFCGTGTHIVSFAINAPNGLYFFHVGYQPTSHVNATAAYGLCNTENPQKCIAP 1164
Query 1073 REGVFVFNGTS---------WFITQRNFFSPQIITTDNT-FVSGNCDVVIGIINNTVYDP 1122
+G FV N T+ W+ T +FF P+ IT N+ +VS DV + N + P
Sbjct 1165 IDGYFVLNQTTSTVADSDQQWYYTGSSFFHPEPITEANSKYVS--MDVKFENLTNRLPPP 1222
Query 1123 L---QPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESL 1179
L +LD FKEEL+++FKN +S + +IS IN +++N+ E+ L+EV K LNES
Sbjct 1223 LLSNSTDLD-FKEELEEFFKNVSSQGPNFQEISKINTTLLNLNTELMVLSEVVKQLNESY 1281
Query 1180 IDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCC-KF 1238
IDL+ELG Y Y KWPWY+WLGFIAGL+A+ + + C T C + G C CC +
Sbjct 1282 IDLKELGNYTFYQKWPWYIWLGFIAGLVALALCVFFILCCTGCGTSCLGKLKCNRCCDSY 1341
Query 1239 DEDDSEPV 1246
DE + E +
Sbjct 1342 DEYEVEKI 1349
>sp|Q0Q4F2|SPIKE_BC133 Spike glycoprotein OS=Bat coronavirus 133/2005
OX=389230 GN=S PE=3 SV=1
Length=1350
Score = 583 bits (1502), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/1079 (37%), Positives = 570/1079 (53%), Gaps = 74/1079 (7%)
Query 222 LPLGINITNFRAILTAF---SPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDC 278
LP+ I + I +F + ++ W AA++V L T++L + +G I A+DC
Sbjct 289 LPVYEGIKYYTVIPRSFRSKANKREAW----AAFYVYKLHQLTYLLDFSVDGYIRRAIDC 344
Query 279 SQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFNATKFPSVY 338
+ L++L CS SFE+D G+Y S++ +G + PN+T C F + P VY
Sbjct 345 GHDDLSQLHCSYTSFEVDTGVYSVSSYEASATGTFIEQPNVTE-CDFSPMLTGVA-PQVY 402
Query 339 AWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIA 398
++R SNC + + L + F C G+S + C+S + D F I
Sbjct 403 NFKRLVFSNCNYNLTKLLSLFAVDEFSCNGISPDAIARGCYSTLTVDYFAYPLSMKSYIR 462
Query 399 PGQTGVIADYNYKLPDDFMGC-VLAWNTRNIDATSTGNYNYKYRYLRHGK---------- 447
PG G I YNYK C V+A N+ T G Y Y + R
Sbjct 463 PGSAGNIPLYNYKQSFANPTCRVMASVPDNVTITKPGAYGYISKCSRLTGVNQDIETPLY 522
Query 448 LRPFE----RDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFEL 503
+ P E RD + + FS DG+ G T + V+S +
Sbjct 523 INPGEYSICRDFAPLGFSEDGQVFKRTLTQFEGGGLLIGVGTRVPMTANLEMGFVISVQY 582
Query 504 LNAPATVC-----GPKLSTDLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSD- 557
+VC G L+ +CV+++ G+TG GV + Q+F D D
Sbjct 583 GTGTDSVCPMLDLGDSLTITNRLGKCVDYSLYGVTGRGVFQNCTAVGVKQQRFVYDSFDN 642
Query 558 ----FTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHA- 612
++D + PC VSVI +++ A L+ V C V+T +
Sbjct 643 LVGYYSDD------GNYYCVRPCVSVPVSVIY--DKSTNLHATLFGSVACEHVTTMMSQF 694
Query 613 DQLTPAWRIYSTGNNVFQTQAGCLIG-AEHVDTSYECDIPIGAGICASYHTVSLLRSTS- 670
+LT + N QT GC+IG + + +C +P+G +CA VS+ RS S
Sbjct 695 SRLTQSNLRRRDSNTPLQTAVGCVIGLSNNSLVVSDCKLPLGQSLCA-VPPVSMFRSYSA 753
Query 671 ---QKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGD 727
Q +++ YT + + I S T AIPTNFS S+T E + S+ K +VDC Y+C
Sbjct 754 SQFQLAVLNYTSPI-VVTPINSSGFTAAIPTNFSFSLTQEYIETSIQKVTVDCKQYVCNG 812
Query 728 STECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYF--GGFNFS 785
T C LL++YG FC+++N+AL G QD + +++ +K T TL+Y G FN +
Sbjct 813 FTRCEKLLVEYGQFCSKINQALHGANLRQDESVYSLYSNIKTT-STQTLEYGLNGDFNLT 871
Query 786 QI-LPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECL--GDINARDLICAQKFNGLTV 842
+ +P + RS IEDLLF+KVT+AD G+M+ Y +C+ G +ARDLICAQ +G V
Sbjct 872 LLQVPQIGGSSYRSAIEDLLFDKVTIADPGYMQGYDDCMKQGPQSARDLICAQYVSGYKV 931
Query 843 LPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQ 902
LPPL +M AAYT++L+ A AGWT G + IPFA M YR NG+G+TQ VL ENQ
Sbjct 932 LPPLYDPNMEAAYTSSLLGSIAGAGWTAGLSSFAAIPFAQSMFYRLNGVGITQQVLSENQ 991
Query 903 KQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDI 962
K IAN+FN+A+ +Q TT++ A K+QD VN NAQAL+ L +LS+ FGAISS ++DI
Sbjct 992 KLIANKFNQALGAMQTGFTTSNLAFSKVQDAVNANAQALSKLASELSNTFGAISSSISDI 1051
Query 963 LSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRV 1022
L+RLD VE + QIDRLI GRL SL +V+QQL+R+ SA LA+ K++ECV QSKR
Sbjct 1052 LARLDTVEQDAQIDRLINGRLTSLNAFVSQQLVRSETAARSAQLASDKVNECVKSQSKRN 1111
Query 1023 DFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYF---PREGVFVF 1079
FCG G H++SF AP+G F HV YVP+ N T A +C+ P +G F+
Sbjct 1112 GFCGSGTHIVSFVVNAPNGFYFFHVGYVPTNYTNVTAAYGLCNHNNPPLCIAPIDGYFIT 1171
Query 1080 NGTS-------WFITQRNFFSPQIITTDNT-FVSGNCDVVIGIINNTVYDPL---QPELD 1128
N T+ W+ T +FF P+ IT N+ +VS DV + N + PL ++D
Sbjct 1172 NQTTTYSVDTEWYYTGSSFFKPEPITQANSRYVSS--DVKFEKLENNLPPPLLENSTDVD 1229
Query 1129 SFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKY 1188
FK+EL+++FKN TS + +IS IN +++++ E+ L EV K LN+S IDL+ELG Y
Sbjct 1230 -FKDELEEFFKNVTSHGPNFAEISKINTTLLDLSDEMAILQEVVKQLNDSYIDLKELGNY 1288
Query 1189 EQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCC-KFDEDDSEPV 1246
Y KWPWY+WLGFIAGL+A+++ L C T C + G C +CC ++E D E +
Sbjct 1289 TYYNKWPWYIWLGFIAGLVALLLCVFFLLCCTGCGTSCLGKMKCKNCCDSYEEYDVEKI 1347
>sp|A3EX94|SPIKE_BCHK4 Spike glycoprotein OS=Bat coronavirus HKU4
OX=694007 GN=S PE=1 SV=1
Length=1352
Score = 571 bits (1471), Expect = 4e-180, Method: Compositional matrix adjust.
Identities = 395/1082 (37%), Positives = 566/1082 (52%), Gaps = 78/1082 (7%)
Query 222 LPLGINITNFRAILTAF---SPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDC 278
LP+ I + I +F + ++ W AA++V L T++L + +G I A+DC
Sbjct 289 LPVYEGIKYYTVIPRSFRSKANKREAW----AAFYVYKLHQLTYLLDFSVDGYIRRAIDC 344
Query 279 SQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFNATKFPSVY 338
+ L++L CS SFE+D G+Y S++ +G + PN T C F + P VY
Sbjct 345 GHDDLSQLHCSYTSFEVDTGVYSVSSYEASATGTFIEQPNATE-CDFSPMLTGVA-PQVY 402
Query 339 AWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIA 398
++R SNC + + L + F C G+S + C+S + D F I
Sbjct 403 NFKRLVFSNCNYNLTKLLSLFAVDEFSCNGISPDSIARGCYSTLTVDYFAYPLSMKSYIR 462
Query 399 PGQTGVIADYNYKLPDDFMGC-VLAWNTRNIDATSTGNYNYKYRYLRHGK---------- 447
PG G I YNYK C V+A N+ T Y Y + R
Sbjct 463 PGSAGNIPLYNYKQSFANPTCRVMASVLANVTITKPHAYGYISKCSRLTGANQDVETPLY 522
Query 448 LRPFE----RDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFEL 503
+ P E RD S FS DG+ G T + ++S +
Sbjct 523 INPGEYSICRDFSPGGFSEDGQVFKRTLTQFEGGGLLIGVGTRVPMTDNLQMSFIISVQY 582
Query 504 LNAPATVC-----GPKLSTDLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSD- 557
+VC G L+ +CV+++ G+TG GV + Q+F D D
Sbjct 583 GTGTDSVCPMLDLGDSLTITNRLGKCVDYSLYGVTGRGVFQNCTAVGVKQQRFVYDSFDN 642
Query 558 ----FTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHA- 612
++D + PC VSVI +++ A L+ V C V+T +
Sbjct 643 LVGYYSDD------GNYYCVRPCVSVPVSVIY--DKSTNLHATLFGSVACEHVTTMMSQF 694
Query 613 DQLTPAWRIYSTGNNVFQTQAGCLIG-AEHVDTSYECDIPIGAGICASYHTVSLLRSTS- 670
+LT + N QT GC+IG + + +C +P+G +CA VS RS S
Sbjct 695 SRLTQSNLRRRDSNIPLQTAVGCVIGLSNNSLVVSDCKLPLGQSLCA-VPPVSTFRSYSA 753
Query 671 ---QKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGD 727
Q +++ YT + + I S T AIPTNFS S+T E + S+ K +VDC Y+C
Sbjct 754 SQFQLAVLNYTSPI-VVTPINSSGFTAAIPTNFSFSVTQEYIETSIQKVTVDCKQYVCNG 812
Query 728 STECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYF--GGFNFS 785
T C LL++YG FC+++N+AL G QD + +++ +K T TL+Y G FN +
Sbjct 813 FTRCEKLLVEYGQFCSKINQALHGANLRQDESVYSLYSNIKTT-STQTLEYGLNGDFNLT 871
Query 786 QILPDPL----KPTKRSFIEDLLFNKVTLADAGFMKQYGECL--GDINARDLICAQKFNG 839
+L P + RS IEDLLF+KVT+AD G+M+ Y +C+ G +ARDLICAQ +G
Sbjct 872 -LLQVPQIGGSSSSYRSAIEDLLFDKVTIADPGYMQGYDDCMKQGPQSARDLICAQYVSG 930
Query 840 LTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLY 899
VLPPL +M AAYT++L+ A AGWT G + IPFA M YR NG+G+TQ VL
Sbjct 931 YKVLPPLYDPNMEAAYTSSLLGSIAGAGWTAGLSSFAAIPFAQSMFYRLNGVGITQQVLS 990
Query 900 ENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVL 959
ENQK IAN+FN+A+ +Q TT++ A K+QD VN NAQAL+ L +LS+ FGAISS +
Sbjct 991 ENQKLIANKFNQALGAMQTGFTTSNLAFSKVQDAVNANAQALSKLASELSNTFGAISSSI 1050
Query 960 NDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQS 1019
+DIL+RLD VE + QIDRLI GRL SL +V+QQL+R+ SA LA+ K++ECV QS
Sbjct 1051 SDILARLDTVEQDAQIDRLINGRLISLNAFVSQQLVRSETAARSAQLASDKVNECVKSQS 1110
Query 1020 KRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYF---PREGV 1076
KR FCG G H++SF AP+G F HV YVP+ N T A +C+ P +G
Sbjct 1111 KRNGFCGSGTHIVSFVVNAPNGFYFFHVGYVPTNYTNVTAAYGLCNNNNPPLCIAPIDGY 1170
Query 1077 FVFNGTS-------WFITQRNFFSPQIITTDNT-FVSGNCDVVIGIINNTVYDPL---QP 1125
F+ N T+ W+ T +F+ P+ IT N+ +VS DV + N + PL
Sbjct 1171 FITNQTTTYSVDTEWYYTGSSFYKPEPITQANSRYVSS--DVKFDKLENNLPPPLLENST 1228
Query 1126 ELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQEL 1185
++D FK+EL+++FKN TS + +IS IN +++++ E+ L EV K LN+S IDL+EL
Sbjct 1229 DVD-FKDELEEFFKNVTSHGPNFAEISKINTTLLDLSDEMAMLQEVVKQLNDSYIDLKEL 1287
Query 1186 GKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCC-KFDEDDSE 1244
G Y Y KWPWYVWLGFIAGL+A+++ L C T C + G C +CC ++E D E
Sbjct 1288 GNYTYYNKWPWYVWLGFIAGLVALLLCVFFLLCCTGCGTSCLGKMKCKNCCDSYEEYDVE 1347
Query 1245 PV 1246
+
Sbjct 1348 KI 1349
>sp|K9N5Q8|SPIKE_MERS1 Spike glycoprotein OS=Middle East respiratory
syndrome-related coronavirus (isolate United Kingdom/H123990006/2012)
OX=1263720 GN=S PE=1 SV=1
Length=1353
Score = 550 bits (1417), Expect = 3e-172, Method: Compositional matrix adjust.
Identities = 366/1052 (35%), Positives = 545/1052 (52%), Gaps = 71/1052 (7%)
Query 250 AAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVP 309
AA++V L+P TF+L + +G I A+DC N L++L CS +SF+++ G+Y S+F P
Sbjct 311 AAFYVYKLQPLTFLLDFSVDGYIRRAIDCGFNDLSQLHCSYESFDVESGVYSVSSFEAKP 370
Query 310 SGDVVRFPNITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGV 369
SG VV C F + + T P VY ++R +NC + + L + + F C +
Sbjct 371 SGSVVEQAEGVE-CDFSPLLSGTP-PQVYNFKRLVFTNCNYNLTKLLSLFSVNDFTCSQI 428
Query 370 SATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGC-VLAWNTRNI 428
S + C+S++ D F ++ G I+ +NYK C +LA N+
Sbjct 429 SPAAIASNCYSSLILDYFSYPLSMKSDLSVSSAGPISQFNYKQSFSNPTCLILATVPHNL 488
Query 429 DATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDG---KPCTPPALNCYWPLNDY---- 481
+T KY Y+ R D + VP + PC + W DY
Sbjct 489 ---TTITKPLKYSYINKCS-RFLSDDRTEVPQLVNANQYSPCVSIVPSTVWEDGDYYRKQ 544
Query 482 -------GFYTTTGIGYQPYRVVVLSFELLNAPAT----VCGPKL---STDLIKNQ---C 524
G+ +G + + F + T VC PKL + I +Q C
Sbjct 545 LSPLEGGGWLVASGSTVAMTEQLQMGFGITVQYGTDTNSVC-PKLEFANDTKIASQLGNC 603
Query 525 VNFNFNGLTGTGVLTPSSKRFQPFQQFGRDV-SDFTDSVRDPKTSEILDISPCSFGGVSV 583
V ++ G++G GV + Q+F D + D L C VSV
Sbjct 604 VEYSLYGVSGRGVFQNCTAVGVRQQRFVYDAYQNLVGYYSDDGNYYCL--RACVSVPVSV 661
Query 584 ITPGTNASSEVAVLYQDVNCTDVSTAI--HADQLTPAWRIYSTGNNVFQTQAGCLIGAEH 641
I + A L+ V C +S+ + ++ + + QT GC++G +
Sbjct 662 IYDKETKTH--ATLFGSVACEHISSTMSQYSRSTRSMLKRRDSTYGPLQTPVGCVLGLVN 719
Query 642 VDTSYE-CDIPIGAGICASYHTVSLLRSTSQKSI--------VAYTMSLGADSSIAYSNN 692
E C +P+G +CA T S L S +S+ +A+ + D + S
Sbjct 720 SSLFVEDCKLPLGQSLCALPDTPSTLTPRSVRSVPGEMRLASIAFNHPIQVDQ-LNSSYF 778
Query 693 TIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGI 752
++IPTNFS +T E + ++ K +VDC Y+C +C LL +YG FC+++N+AL G
Sbjct 779 KLSIPTNFSFGVTQEYIQTTIQKVTVDCKQYVCNGFQKCEQLLREYGQFCSKINQALHGA 838
Query 753 AAEQDRNTREVFAQVKQMYKTPTLKYFGG-FNFSQILPDPLKP---TKRSFIEDLLFNKV 808
QD + R +FA VK +P + FGG FN + + P + + RS IEDLLF+KV
Sbjct 839 NLRQDDSVRNLFASVKSSQSSPIIPGFGGDFNLTLLEPVSISTGSRSARSAIEDLLFDKV 898
Query 809 TLADAGFMKQYGECL--GDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATA 866
T+AD G+M+ Y +C+ G +ARDLICAQ G VLPPL+ +M AAYT++L+ A
Sbjct 899 TIADPGYMQGYDDCMQQGPASARDLICAQYVAGYKVLPPLMDVNMEAAYTSSLLGSIAGV 958
Query 867 GWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTA 926
GWT G + IPFA + YR NG+G+TQ VL ENQK IAN+FN+A+ +Q TTT+ A
Sbjct 959 GWTAGLSSFAAIPFAQSIFYRLNGVGITQQVLSENQKLIANKFNQALGAMQTGFTTTNEA 1018
Query 927 LGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSL 986
K+QD VN NAQAL+ L +LS+ FGAIS+ + DI+ RLD +E + QIDRLI GRL +L
Sbjct 1019 FHKVQDAVNNNAQALSKLASELSNTFGAISASIGDIIQRLDVLEQDAQIDRLINGRLTTL 1078
Query 987 QTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLH 1046
+V QQL+R+ SA LA K++ECV QSKR FCG+G H++SF AP+G+ F+H
Sbjct 1079 NAFVAQQLVRSESAALSAQLAKDKVNECVKAQSKRSGFCGQGTHIVSFVVNAPNGLYFMH 1138
Query 1047 VTYVPSQERNFTTAPAICHEG---KAYFPREGVFVFNGTS-----WFITQRNFFSPQIIT 1098
V Y PS +A +C P G F+ + W T +F++P+ IT
Sbjct 1139 VGYYPSNHIEVVSAYGLCDAANPTNCIAPVNGYFIKTNNTRIVDEWSYTGSSFYAPEPIT 1198
Query 1099 TDNT-FVSGNCDVVIGIINNTVYDPL---QPELDSFKEELDKYFKNHTSPDVDLGDISGI 1154
+ NT +V+ V I+ + PL +D F++ELD++FKN ++ + G ++ I
Sbjct 1199 SLNTKYVAPQ--VTYQNISTNLPPPLLGNSTGID-FQDELDEFFKNVSTSIPNFGSLTQI 1255
Query 1155 NASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTI 1214
N +++++ E+ L +V K LNES IDL+ELG Y Y KWPWY+WLGFIAGL+A+ +
Sbjct 1256 NTTLLDLTYEMLSLQQVVKALNESYIDLKELGNYTYYNKWPWYIWLGFIAGLVALALCVF 1315
Query 1215 LLCCMTSCCSCLKGACSCGSCC-KFDEDDSEP 1245
+ C T C + G C CC +++E D EP
Sbjct 1316 FILCCTGCGTNCMGKLKCNRCCDRYEEYDLEP 1347
>sp|P11225|SPIKE_CVMJH Spike glycoprotein OS=Murine coronavirus
(strain JHM) OX=11144 GN=S PE=1 SV=1
Length=1235
Score = 525 bits (1353), Expect = 3e-164, Method: Compositional matrix adjust.
Identities = 409/1319 (31%), Positives = 619/1319 (47%), Gaps = 153/1319 (12%)
Query 1 MFIFLLFLTLTSGSDLD-RCTTF-----DDVQAPNYTQHT---SSMRGVYYP-DEIFRSD 50
+F+F+L L G D RC ++ AP+ + S RG YY D ++ +
Sbjct 2 LFVFILLLPSCLGYIGDFRCIQTVNYNGNNASAPSISTEAVDVSKGRGTYYVLDRVYLNA 61
Query 51 TLYLTQDLFLPF----YSNV--TGFHTINHTFGNP--VIPFKDGIYFAATE--KSNVVRG 100
TL LT + P Y N+ TG +T++ T+ P + F DGI FA + K+N G
Sbjct 62 TLLLTG--YYPVDGSNYRNLALTGTNTLSLTWFKPPFLSEFNDGI-FAKVQNLKTNTPTG 118
Query 101 W-------VFGSTMNNKSQSVIIINNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIF 153
V GS N S +V++ + ++ C + +C P+ KP + F
Sbjct 119 ATSYFPTIVIGSLFGNTSYTVVLEPYNNIIMASVCTYTICQLPY-TPCKPNTNGNRVIGF 177
Query 154 DNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVY---KGYQPIDVVRDLP 210
+ DV K R F F +LY + +G D P
Sbjct 178 --------------WHTDVKPPICLLK--RNFTFNVNAPWLYFHFYQQGGTFYAYYADKP 221
Query 211 SGFNTLKPIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENG 270
S L F + +G +T + + +P T A Y+V L ++ ++E G
Sbjct 222 SATTFL---FSVYIGDILTQYFVLPFICTPTAG--STLAPLYWVTPLLKRQYLFNFNEKG 276
Query 271 TITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVR-FPNITNLCPFGEVF 329
IT AVDC+ + ++E+KC +S G+Y S + V P G V R PN+ + C E
Sbjct 277 VITSAVDCASSYISEIKCKTQSLLPSTGVYDLSGYTVQPVGVVYRRVPNLPD-CKIEEWL 335
Query 330 NATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVV 389
A PS WER+ NC + S L + C + A+K+ +CF +V D F +
Sbjct 336 TAKSVPSPLNWERRTFQNCNFNLSSLLRYVQAESLSCNNIDASKVYGMCFGSVSVDKFAI 395
Query 390 KGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDATSTGNYNYKYRYLRHGKLR 449
+ G +G + NYK+ C L ++ + T NYN R+G
Sbjct 396 PRSRQIDLQIGNSGFLQTANYKIDTAATSCQLYYSLPKNNVT-INNYNPSSWNRRYG--- 451
Query 450 PFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNA--P 507
+ +ND R + + LLN
Sbjct 452 --------------------------FKVND--------------RCQIFANILLNGINS 471
Query 508 ATVCGPKL---STDLIKNQCVNFNFNGLTGTGVLTP-SSKRFQPFQQFGRDVSDFTDSVR 563
T C L +T++ CV ++ G+TG GV + + +Q DV+ + R
Sbjct 472 GTTCSTDLQLPNTEVATGVCVRYDLYGITGQGVFKEVKADYYNSWQALLYDVNGNLNGFR 531
Query 564 DPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYS 623
D T++ I C G VS + E A+LY+++NC+ V T + + P
Sbjct 532 DLTTNKTYTIRSCYSGRVSAAY--HKEAPEPALLYRNINCSYVFTNNISREENPL----- 584
Query 624 TGNNVFQTQAGCLIGAEH-VDTSY-ECDIPIGAGICASYHTVSLLRSTSQKSIVAYT--- 678
N F + GC++ A++ D + C++ +GAG+C Y R + T
Sbjct 585 ---NYFDSYLGCVVNADNRTDEALPNCNLRMGAGLCVDYSKSRRARRSVSTGYRLTTFEP 641
Query 679 -MSLGADSSIAYSNN--TIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLL 735
M + + S+ + IPTNF+I E + + K ++DC ++CGD+ C L
Sbjct 642 YMPMLVNDSVQSVGGLYEMQIPTNFTIGHHEEFIQIRAPKVTIDCAAFVCGDNAACRQQL 701
Query 736 LQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFG------GFNFSQILP 789
++YGSFC +N L+ + D +V + + Q + G NFS +L
Sbjct 702 VEYGSFCDNVNAILNEVNNLLDNMQLQVASALMQGVTISSRLPDGISGPIDDINFSPLLG 761
Query 790 -----------DPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARDLICAQKFN 838
P RS IEDLLF+KV L+D GF++ Y C G RDL+C Q FN
Sbjct 762 CIGSTCAEDGNGPSAIRGRSAIEDLLFDKVKLSDVGFVEAYNNCTGGQEVRDLLCVQSFN 821
Query 839 GLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVL 898
G+ VLPP+L++ I+ YTA + WT AG +PF++ + YR NG+GVT NVL
Sbjct 822 GIKVLPPVLSESQISGYTAGATAAAMFPPWTAAAG----VPFSLNVQYRINGLGVTMNVL 877
Query 899 YENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSV 958
ENQK IA+ FN A+ IQE T++ALGK+Q VVN NA+ALN L+ QLS+ FGAIS+
Sbjct 878 SENQKMIASAFNNALGAIQEGFDATNSALGKIQSVVNANAEALNNLLNQLSNRFGAISAS 937
Query 959 LNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQ 1018
L +IL+RLD VEA+ QIDRLI GRL +L Y+++QL + I+ SA A K++ECV Q
Sbjct 938 LQEILTRLDAVEAKAQIDRLINGRLTALNAYISKQLSDSTLIKFSAAQAIEKVNECVKSQ 997
Query 1019 SKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEG-KAYFPREGVF 1077
+ R++FCG G H++S Q AP+G+ F+H +YVP+ + +P +C G + P+ G F
Sbjct 998 TTRINFCGNGNHILSLVQNAPYGLCFIHFSYVPTSFKTANVSPGLCISGDRGLAPKAGYF 1057
Query 1078 VFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPLQPELDSFKEELDKY 1137
V + W T N++ P+ IT N+ +C V + P L FKEELDK+
Sbjct 1058 VQDNGEWKFTGSNYYYPEPITDKNSVAMISCAVNYTKAPEVFLNNSIPNLPDFKEELDKW 1117
Query 1138 FKNHTS--PDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWP 1195
FKN TS PD+ L D +N + +++ E++R+ + K LNES I+L+E+G YE Y+KWP
Sbjct 1118 FKNQTSIAPDLSL-DFEKLNVTFLDLTYEMNRIQDAIKKLNESYINLKEVGTYEMYVKWP 1176
Query 1196 WYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCC-KFDEDDSEPVLKGVKLH 1253
WYVWL + GL + + +L CGSCC ++ V+ + H
Sbjct 1177 WYVWL--LIGLAGVAVCVLLFFICCCTGCGSCCFRKCGSCCDEYGGHQDSIVIHNISAH 1233
>sp|P11224|SPIKE_CVMA5 Spike glycoprotein OS=Murine coronavirus
(strain A59) OX=11142 GN=S PE=1 SV=2
Length=1324
Score = 510 bits (1314), Expect = 8e-158, Method: Compositional matrix adjust.
Identities = 408/1346 (30%), Positives = 626/1346 (47%), Gaps = 153/1346 (11%)
Query 1 MFIFLLFLTLTSGSDLD-RCTTF-----DDVQAPNYTQHT---SSMRGVYYP-DEIFRSD 50
+F+F+LFL G D RC +V AP+ + T S G YY D ++ +
Sbjct 2 LFVFILFLPSCLGYIGDFRCIQLVNSNGANVSAPSISTETVEVSQGLGTYYVLDRVYLNA 61
Query 51 TLYLTQDLFLPF----YSNVT--GFHTINHTFGNP--VIPFKDGIYFAATE--KSNVVRG 100
TL LT + P + N+ G ++++ ++ P + F DGI FA + K++ G
Sbjct 62 TLLLTG--YYPVDGSKFRNLALRGTNSVSLSWFQPPYLNQFNDGI-FAKVQNLKTSTPSG 118
Query 101 W-------VFGSTMNNKSQSVIIINNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIF 153
V GS S +V+I + ++ C + +C P+ +
Sbjct 119 ATAYFPTIVIGSLFGYTSYTVVIEPYNGVIMASVCQYTICQLPYTDCKPNTNGNKLIGFW 178
Query 154 DNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGF 213
+ F+L+V+ + F F G Y Y D PS
Sbjct 179 HTDVKPPICVLKRNFTLNVNADAFYFH------FYQHGGTFYAYYA--------DKPSAT 224
Query 214 NTLKPIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTIT 273
L F + +G +T + + +P T A Y+V L ++ +++ G IT
Sbjct 225 TFL---FSVYIGDILTQYYVLPFICNPTAG--STFAPRYWVTPLVKRQYLFNFNQKGVIT 279
Query 274 DAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNL--CPFGEVFNA 331
AVDC+ + +E+KC +S G+Y+ S + V P G V R + NL C E A
Sbjct 280 SAVDCASSYTSEIKCKTQSMLPSTGVYELSGYTVQPVGVVYR--RVANLPACNIEEWLTA 337
Query 332 TKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKG 391
PS WERK NC + S L + C + A+K+ CF ++ D F V
Sbjct 338 RSVPSPLNWERKTFQNCNFNLSSLLRYVQAESLFCNNIDASKVYGRCFGSISVDKFAVPR 397
Query 392 DDVRQIAPGQTGVIADYNYKLPDDFMGCVLAW----NTRNIDATSTGNYNYKYRYLRHGK 447
+ G +G + NYK+ C L + N I+ + ++N +Y + G
Sbjct 398 SRQVDLQLGNSGFLQTANYKIDTAATSCQLHYTLPKNNVTINNHNPSSWNRRYGFNDAGV 457
Query 448 LRPFERDI-----------SNVPFS-PD-GKPCTP------------------------- 469
+ D+ S P + PD PCT
Sbjct 458 FGKNQHDVVYAQQCFTVRSSYCPCAQPDIVSPCTTQTKPKSAFVNVGDHCEGLGVLEDNC 517
Query 470 ----PALNCYWPLNDY-GFYTTTGIGYQPYRVVVLSFELLNA--PATVCGPKL---STDL 519
P C N + G+ T + R + + LLN T C L +T++
Sbjct 518 GNADPHKGCICANNSFIGWSHDTCLVND--RCQIFANILLNGINSGTTCSTDLQLPNTEV 575
Query 520 IKNQCVNFNFNGLTGTGVLTP-SSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSF 578
+ CV ++ G+TG GV + + +Q DV+ + RD T++ I C
Sbjct 576 VTGICVKYDLYGITGQGVFKEVKADYYNSWQTLLYDVNGNLNGFRDLTTNKTYTIRSCYS 635
Query 579 GGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIG 638
G VS + E A+LY+++NC+ V + + + P N F + GC++
Sbjct 636 GRVSAAF--HKDAPEPALLYRNINCSYVFSNNISREENPL--------NYFDSYLGCVVN 685
Query 639 AEH-VDTSY-ECDIPIGAGICASY-HTVSLLRSTSQ----KSIVAYTMSLGADSSIAYSN 691
A++ D + CD+ +GAG+C Y + RS S + YT L DS +
Sbjct 686 ADNRTDEALPNCDLRMGAGLCVDYSKSRRAHRSVSTGYRLTTFEPYTPMLVNDSVQSVDG 745
Query 692 -NTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALS 750
+ IPTNF+I E + K ++DC ++CGD+T C L++YGSFC +N L+
Sbjct 746 LYEMQIPTNFTIGHHEEFIQTRSPKVTIDCAAFVCGDNTACRQQLVEYGSFCVNVNAILN 805
Query 751 GIAAEQDRNTREVFAQVKQMYKTPTLKYFG------GFNFSQILP-----------DPLK 793
+ D +V + + Q + G NFS +L P
Sbjct 806 EVNNLLDNMQLQVASALMQGVTISSRLPDGISGPIDDINFSPLLGCIGSTCAEDGNGPSA 865
Query 794 PTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIA 853
RS IEDLLF+KV L+D GF++ Y C G RDL+C Q FNG+ VLPP+L++ I+
Sbjct 866 IRGRSAIEDLLFDKVKLSDVGFVEAYNNCTGGQEVRDLLCVQSFNGIKVLPPVLSESQIS 925
Query 854 AYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAI 913
YT + W+ AG +PF++ + YR NG+GVT NVL ENQK IA+ FN A+
Sbjct 926 GYTTGATAAAMFPPWSAAAG----VPFSLSVQYRINGLGVTMNVLSENQKMIASAFNNAL 981
Query 914 SQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEV 973
IQ+ T++ALGK+Q VVN NA+ALN L+ QLS+ FGAIS+ L +IL+RL+ VEA+
Sbjct 982 GAIQDGFDATNSALGKIQSVVNANAEALNNLLNQLSNRFGAISASLQEILTRLEAVEAKA 1041
Query 974 QIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMS 1033
QIDRLI GRL +L Y+++QL + I+ SA A K++ECV Q+ R++FCG G H++S
Sbjct 1042 QIDRLINGRLTALNAYISKQLSDSTLIKVSAAQAIEKVNECVKSQTTRINFCGNGNHILS 1101
Query 1034 FPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEG-KAYFPREGVFVFNGTSWFITQRNFF 1092
Q AP+G+ F+H +YVP +P +C G + P+ G FV + W T +++
Sbjct 1102 LVQNAPYGLYFIHFSYVPISFTTANVSPGLCISGDRGLAPKAGYFVQDDGEWKFTGSSYY 1161
Query 1093 SPQIITTDNTFVSGNCDVVIGIINNTVYDPLQPELDSFKEELDKYFKNHTS--PDVDLGD 1150
P+ IT N+ + +C V + P FKEELDK+FKN TS PD+ L D
Sbjct 1162 YPEPITDKNSVIMSSCAVNYTKAPEVFLNTSIPNPPDFKEELDKWFKNQTSIAPDLSL-D 1220
Query 1151 ISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIV 1210
+N +++++ E++R+ + K LNES I+L+E+G YE Y+KWPWYVWL + GL +
Sbjct 1221 FEKLNVTLLDLTYEMNRIQDAIKKLNESYINLKEVGTYEMYVKWPWYVWL--LIGLAGVA 1278
Query 1211 MVTILLCCMTSCCSCLKGACSCGSCC 1236
+ +L CG+CC
Sbjct 1279 VCVLLFFICCCTGCGSCCFKKCGNCC 1304
>sp|P25192|SPIKE_CVBLY Spike glycoprotein OS=Bovine coronavirus
(strain LY-138) OX=11131 GN=S PE=3 SV=1
Length=1363
Score = 476 bits (1225), Expect = 1e-144, Method: Compositional matrix adjust.
Identities = 281/758 (37%), Positives = 411/758 (54%), Gaps = 43/758 (6%)
Query 514 KLSTDLIKNQCVNFNFNGLTGTGVLTP-SSKRFQPFQQFGRDVSDFTDSVRDPKTSEILD 572
K +TD+I CVN++ G+TG G+ ++ + +Q D + RD T+
Sbjct 621 KSNTDIILGVCVNYDLYGITGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYLTNRTFM 680
Query 573 ISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQ 632
I C G VS SSE A+L++++ C V + QL P N F +
Sbjct 681 IRSCYSGRVSAAFHAN--SSEPALLFRNIKCNYVFNNTLSRQLQPI--------NYFDSY 730
Query 633 AGCLIGAEHVDTS--YECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYS 690
GC++ A++ +S CD+ +G+G C Y T R + + Y + ++
Sbjct 731 LGCVVNADNSTSSAVQTCDLTVGSGYCVDYSTK---RRSRRAITTGYRFTNFEPFTVNSV 787
Query 691 NNT---------IAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSF 741
N++ I IP+ F+I E + +S K ++DC+ ++CGD C + L++YGSF
Sbjct 788 NDSLEPVGGLYEIQIPSEFTIGNMEEFIQISSPKVTIDCSAFVCGDYAACKSQLVEYGSF 847
Query 742 CTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFG------GFNFSQIL----PDP 791
C +N L+ + D +V + T G NFS +L D
Sbjct 848 CDNINAILTEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSDC 907
Query 792 LKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARDLICAQKFNGLTVLPPLLTDDM 851
K + RS IEDLLF+KV L+D GF++ Y C G RDLIC Q +NG+ VLPPLL+++
Sbjct 908 NKVSSRSAIEDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSENQ 967
Query 852 IAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNK 911
I+ YT A S + W+ AG +PF + + YR NGIGVT +VL +NQK IAN FN
Sbjct 968 ISGYTLAATSASLFPPWSAAAG----VPFYLNVQYRINGIGVTMDVLSQNQKLIANAFNN 1023
Query 912 AISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA 971
A+ IQE T++AL K+Q VVN NA+ALN L++QLS+ FGAISS L +ILSRLD +EA
Sbjct 1024 ALDAIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISSSLQEILSRLDALEA 1083
Query 972 EVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHL 1031
+ QIDRLI GRL +L YV+QQL + ++ SA A K++ECV QS R++FCG G H+
Sbjct 1084 QAQIDRLINGRLTALNAYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNHI 1143
Query 1032 MSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEG-KAYFPREGVFVFNGTSWFITQRN 1090
+S Q AP+G+ F+H +YVP++ +P +C G + P+ G FV +W T
Sbjct 1144 ISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGDRGIAPKSGYFVNVNNTWMFTGSG 1203
Query 1091 FFSPQIITTDNTFVSGNCDVVIGIINNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGD 1150
++ P+ IT +N V C V + + + P L FKEELD++FKN TS DL
Sbjct 1204 YYYPEPITGNNVVVMSTCAVNYTKAPDVMLNISTPNLPDFKEELDQWFKNQTSVAPDL-S 1262
Query 1151 ISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIV 1210
+ IN + +++Q E++RL E K LN+S I+L+++G YE Y+KWPWYVWL + GL +
Sbjct 1263 LDYINVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWL--LIGLAGVA 1320
Query 1211 MVTILLCCMTSCCSCLKGACSCGSCCKFDEDDSEPVLK 1248
M+ +L CG CC E V+K
Sbjct 1321 MLVLLFFICCCTGCGTSCFKKCGGCCDDYTGHQELVIK 1358
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 115/466 (25%), Positives = 190/466 (41%), Gaps = 76/466 (16%)
Query 1 MFIFLLF---LTLTSGSDLDRCTTFD----DVQAPNYTQHTSSMR---GVYYPDEIFRSD 50
MF+ LL + L DL +CTT D P+ + T + G YY D
Sbjct 1 MFLILLISLPMALAVIGDL-KCTTVSINDVDTGVPSVSTDTVDVTNGLGTYY-----VLD 54
Query 51 TLYLTQDLFLPFYSNVTGFHTINHTFGNPVI------------PFKDGIYFAATEKSNVV 98
+YL L L Y +G N ++ F +GI FA + + V+
Sbjct 55 RVYLNTTLLLNGYYPTSGSTYRNMALKGTLLLSTLWFKPPFLSDFINGI-FAKVKNTKVI 113
Query 99 RGWVF---------GSTMNNKSQSVIIINNSTNV--------VIRACNFELCDNPFFAVS 141
+ V GST N S SV++ ++TN+ I C + +C+ P
Sbjct 114 KNGVMYSEFPAITIGSTFVNTSYSVVVQPHTTNLDNKLQGLLEISVCQYTMCEYPHTICH 173
Query 142 KPMGTQTHTMIF--DNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKG 199
+G + + +C ++ F+ DV N +L F F + G Y Y
Sbjct 174 PNLGNRRIELWHWDTGVVSCLYK---RNFTYDV-----NADYLY-FHFYQEGGTFYAY-- 222
Query 200 YQPIDVVRDLPSGFNTLKPIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKP 259
+ VV K +F + LG ++++ + + A + Y+V L
Sbjct 223 FTDTGVVT---------KFLFNVYLGTVLSHYYVMPLTCNSAMTL------EYWVTPLTS 267
Query 260 TTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVR-FPN 318
++L ++++G I +AVDC + ++E+KC S G+Y+ + + V P DV R PN
Sbjct 268 KQYLLAFNQDGVIFNAVDCKSDFMSEIKCKTLSIAPSTGVYELNGYTVQPIADVYRRIPN 327
Query 319 ITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLC 378
+ + C N PS WERK SNC + S L + +F C + A K+ +C
Sbjct 328 LPD-CNIEAWLNDKSVPSPLNWERKTFSNCNFNMSSLMSFIQADSFTCNNIDAAKIYGMC 386
Query 379 FSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWN 424
FS++ D F + + G G + +NY++ C L +N
Sbjct 387 FSSITIDKFAIPNGRKVDLQLGNLGYLQSFNYRIDTTATSCQLYYN 432
>sp|Q9QAQ8|SPIKE_CVBOK Spike glycoprotein OS=Bovine coronavirus
(strain OK-0514) OX=231432 GN=S PE=3 SV=1
Length=1363
Score = 475 bits (1222), Expect = 3e-144, Method: Compositional matrix adjust.
Identities = 282/759 (37%), Positives = 412/759 (54%), Gaps = 45/759 (6%)
Query 514 KLSTDLIKNQCVNFNFNGLTGTGVLTP-SSKRFQPFQQFGRDVSDFTDSVRDPKTSEILD 572
K +TD+I CVN++ G+TG G+ ++ + +Q D + RD T+
Sbjct 621 KSNTDIILGVCVNYDLYGITGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYLTNRTFM 680
Query 573 ISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQ 632
I C G VS SSE A+L++++ C V + QL P N F +
Sbjct 681 IRSCYSGRVSAAFHAN--SSEPALLFRNIKCNYVFNNTLSRQLQPI--------NYFDSY 730
Query 633 AGCLIGAEHVDTSY--ECDIPIGAGICASYHTVSLLRSTSQKSIV-AYTMSLGADSSIAY 689
GC++ A++ +S CD+ +G+G C Y T + S++SI Y + ++
Sbjct 731 LGCVVNADNSTSSVVQTCDLTVGSGYCVDYST----KRRSRRSITTGYRFTNFEPFTVNS 786
Query 690 SNNT---------IAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGS 740
N++ I IP+ F+I E + S K ++DC+ ++CGD C + L++YGS
Sbjct 787 VNDSLEPVGGLYEIQIPSEFTIGNMEEFIQTSSPKVTIDCSAFVCGDYAACKSQLVEYGS 846
Query 741 FCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFG------GFNFSQIL----PD 790
FC +N L+ + D +V + T G NFS +L D
Sbjct 847 FCDNINAILTEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSD 906
Query 791 PLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARDLICAQKFNGLTVLPPLLTDD 850
K + RS IEDLLF+KV L+D GF++ Y C G RDLIC Q +NG+ VLPPLL+++
Sbjct 907 CNKVSSRSAIEDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSEN 966
Query 851 MIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFN 910
I+ YT A S + W+ AG +PF + + YR NGIGVT +VL +NQK IAN FN
Sbjct 967 QISGYTLAATSASLFPPWSAAAG----VPFYLNVQYRINGIGVTMDVLSQNQKLIANAFN 1022
Query 911 KAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVE 970
A+ IQE T++AL K+Q VVN NA+ALN L++QLS+ FGAISS L +ILSRLD +E
Sbjct 1023 NALGAIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISSSLQEILSRLDALE 1082
Query 971 AEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH 1030
A+ QIDRLI GRL +L YV+QQL + ++ SA A K++ECV QS R++FCG G H
Sbjct 1083 AQAQIDRLINGRLTALNAYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNH 1142
Query 1031 LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEG-KAYFPREGVFVFNGTSWFITQR 1089
++S Q AP+G+ F+H +YVP++ +P +C G + P+ G FV +W T
Sbjct 1143 IISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGDRGIAPKSGYFVNVNNTWMFTGS 1202
Query 1090 NFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLG 1149
++ P+ IT +N V C V + + + P L FKEELD++FKN TS DL
Sbjct 1203 GYYYPEPITGNNVVVMSTCAVNYTKAPDVMLNISTPNLPDFKEELDQWFKNQTSVAPDL- 1261
Query 1150 DISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAI 1209
+ IN + +++Q E++RL E K LN+S I+L+++G YE Y+KWPWYVWL + G +
Sbjct 1262 SLDYINVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWL--LIGFAGV 1319
Query 1210 VMVTILLCCMTSCCSCLKGACSCGSCCKFDEDDSEPVLK 1248
M+ +L CG CC E V+K
Sbjct 1320 AMLVLLFFICCCTGCGTSCFKKCGGCCDDYTGHQELVIK 1358
Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 92/362 (25%), Positives = 157/362 (43%), Gaps = 48/362 (13%)
Query 83 FKDGIYFAATEKSNVVRGWV---------FGSTMNNKSQSVIIINNSTNV--------VI 125
F +GI FA + + V++ V GST N S SV++ ++TN+ I
Sbjct 99 FTNGI-FAKVKNTKVIKDGVKYSEFPAITIGSTFVNTSYSVVVQPHTTNLDNKLQGLLEI 157
Query 126 RACNFELCDNPFFAVSKPMGTQTHTMIF--DNAFNCTFEYISDAFSLDVSEKSGNFKHLR 183
C + +C+ P + +G Q + +C ++ F+ DV N +L
Sbjct 158 SVCQYTMCEYPNTICNPNLGNQRVELWHWDTGVVSCLYK---RNFTYDV-----NADYLY 209
Query 184 EFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITNFRAILTAFSPAQD 243
F F + G Y Y + VV K +F + LG ++++ + + A
Sbjct 210 -FHFYQEGGTFYAY--FTDTGVVT---------KFLFNVYLGTVLSHYYVMPLTCNSAMT 257
Query 244 IWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTS 303
+ Y+V L ++L ++++G I +AVDC + ++E+KC S G+Y+ +
Sbjct 258 L------EYWVTPLTSKQYLLAFNQDGVIFNAVDCKSDFMSEIKCKTLSIAPSTGVYELN 311
Query 304 NFRVVPSGDVVR-FPNITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFS 362
+ V P DV R PN+ + C N PS WERK SNC + S L +
Sbjct 312 GYTVQPIADVYRRIPNLPD-CNIEAWLNDKSVPSPLNWERKTFSNCNFNMSSLMSFIQAD 370
Query 363 TFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLA 422
+F C + A K+ +CFS++ D F + + G G + +NY++ C L
Sbjct 371 SFTCNNIDAAKIYGMCFSSITIDKFAIPNGRKVDLQLGNLGYLQSFNYRIDTTATSCQLY 430
Query 423 WN 424
+N
Sbjct 431 YN 432
>sp|Q91A26|SPIKE_CVBEN Spike glycoprotein OS=Bovine coronavirus
(strain 98TXSF-110-ENT) OX=233262 GN=S PE=3 SV=1
Length=1363
Score = 474 bits (1221), Expect = 4e-144, Method: Compositional matrix adjust.
Identities = 282/759 (37%), Positives = 412/759 (54%), Gaps = 45/759 (6%)
Query 514 KLSTDLIKNQCVNFNFNGLTGTGVLTP-SSKRFQPFQQFGRDVSDFTDSVRDPKTSEILD 572
K +TD+I CVN++ G+TG G+ ++ + +Q D + RD T+
Sbjct 621 KSNTDIILGVCVNYDLYGITGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYLTNRTFM 680
Query 573 ISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQ 632
I C G VS SSE A+L++++ C V + QL P N F +
Sbjct 681 IRSCYSGRVSAAFHAN--SSEPALLFRNIKCNYVFNNTLSRQLQPI--------NYFDSY 730
Query 633 AGCLIGAEHVDTSY--ECDIPIGAGICASYHTVSLLRSTSQKSIV-AYTMSLGADSSIAY 689
GC++ A++ +S CD+ +G+G C Y T + S++SI Y + ++
Sbjct 731 LGCVVNADNSTSSVVQTCDLTVGSGYCVDYST----KRRSRRSITTGYRFTNFEPFTVNS 786
Query 690 SNNT---------IAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGS 740
N++ I IP+ F+I E + S K ++DC+ ++CGD C + L++YGS
Sbjct 787 VNDSLEPVGGLYEIQIPSEFTIGNMEEFIQTSSPKVTIDCSAFVCGDYAACKSQLVEYGS 846
Query 741 FCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFG------GFNFSQIL----PD 790
FC +N L+ + D +V + T G NFS +L D
Sbjct 847 FCDNINAILTEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSD 906
Query 791 PLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARDLICAQKFNGLTVLPPLLTDD 850
K + RS IEDLLF+KV L+D GF++ Y C G RDLIC Q +NG+ VLPPLL+++
Sbjct 907 CNKVSSRSAIEDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSEN 966
Query 851 MIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFN 910
I+ YT A S + W+ AG +PF + + YR NGIGVT +VL +NQK IAN FN
Sbjct 967 QISGYTLAATSASLFPPWSAAAG----VPFYLNVQYRINGIGVTMDVLSQNQKLIANAFN 1022
Query 911 KAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVE 970
A+ IQE T++AL K+Q VVN NA+ALN L++QLS+ FGAISS L +ILSRLD +E
Sbjct 1023 NALGAIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISSSLQEILSRLDALE 1082
Query 971 AEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH 1030
A+ QIDRLI GRL +L YV+QQL + ++ SA A K++ECV QS R++FCG G H
Sbjct 1083 AQAQIDRLINGRLTALNAYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNH 1142
Query 1031 LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEG-KAYFPREGVFVFNGTSWFITQR 1089
++S Q AP+G+ F+H +YVP++ +P +C G + P+ G FV +W T
Sbjct 1143 IISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGDRGIAPKSGYFVNVNNTWMFTGS 1202
Query 1090 NFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLG 1149
++ P+ IT +N V C V + + + P L FKEELD++FKN TS DL
Sbjct 1203 GYYYPEPITGNNVVVMSTCAVNYTKAPDVMLNISTPNLPYFKEELDQWFKNQTSVAPDL- 1261
Query 1150 DISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAI 1209
+ IN + +++Q E++RL E K LN+S I+L+++G YE Y+KWPWYVWL + G +
Sbjct 1262 SLDYINVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWL--LIGFAGV 1319
Query 1210 VMVTILLCCMTSCCSCLKGACSCGSCCKFDEDDSEPVLK 1248
M+ +L CG CC E V+K
Sbjct 1320 AMLVLLFFICCCTGCGTSCFKKCGGCCDDYTGHQELVIK 1358
Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 108/452 (24%), Positives = 184/452 (41%), Gaps = 75/452 (17%)
Query 83 FKDGIYFAATEKSNVVRGWVF---------GSTMNNKSQSVIIINNSTNV--------VI 125
F +GI FA + + V++ V GST N S SV++ ++T + I
Sbjct 99 FTNGI-FAKVKNTKVIKDGVMYSEFPAITIGSTFVNTSYSVVVQPHTTILGNKLQGFLEI 157
Query 126 RACNFELCDNPFFAVSKPMGTQTHTMIF--DNAFNCTFEYISDAFSLDVSEKSGNFKHLR 183
C + +C+ P + +G Q + +C ++ F+ DV N +L
Sbjct 158 SVCQYTMCEYPNTICNPNLGNQRVELWHWDTGVVSCLYK---RNFTYDV-----NADYLY 209
Query 184 EFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITNFRAILTAFSPAQD 243
F F + G Y Y + VV K +F + LG ++++ + + A
Sbjct 210 -FHFYQEGGTFYAY--FTDTGVVT---------KFLFNVYLGTVLSHYYVMPLTCNSALT 257
Query 244 IWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTS 303
+ Y+V L ++L ++++G I +AVDC + ++E+KC S G+Y+ +
Sbjct 258 L------EYWVTPLTSKQYLLAFNQDGVIFNAVDCKSDFMSEIKCKTLSIAPSTGVYELN 311
Query 304 NFRVVPSGDVVR-FPNITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFS 362
+ V P DV R PN+ + C N PS WERK SNC + S L +
Sbjct 312 GYTVQPIADVYRRIPNLPD-CNIEAWLNDKSVPSPLNWERKTFSNCNFNMSSLMSFIQAY 370
Query 363 TFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLA 422
+F C + A K+ +CFS++ D F + + G G + +NY++ C L
Sbjct 371 SFTCNNIDAAKIYGMCFSSITIDKFAIPNGRKVDLQLGNLGYLQSFNYRIDTTATSCQLY 430
Query 423 WN--TRNIDAT--STGNYNYKYRYLRHGKLRP-----------------FERDISNVPFS 461
+N N+ + + +N ++ + +P F+ + P
Sbjct 431 YNLPAANVSVSRFNPSTWNRRFGFTEQSVFKPQPAGVFTDHDVVYAQHCFKASTNFCPCK 490
Query 462 PDGKPCTPPALNCYWPLNDYGFYTTTGIGYQP 493
DG C P D G Y T+GIG P
Sbjct 491 LDGSLCVGNG-----PGIDAG-YKTSGIGTCP 516
>sp|Q9QAR5|SPIKE_CVBLS Spike glycoprotein OS=Bovine coronavirus
(strain LSU-94LSS-051) OX=233261 GN=S PE=3 SV=1
Length=1363
Score = 473 bits (1218), Expect = 9e-144, Method: Compositional matrix adjust.
Identities = 282/759 (37%), Positives = 411/759 (54%), Gaps = 45/759 (6%)
Query 514 KLSTDLIKNQCVNFNFNGLTGTGVLTP-SSKRFQPFQQFGRDVSDFTDSVRDPKTSEILD 572
K +TD+I CVN++ G+TG G+ ++ + +Q D + RD T+
Sbjct 621 KSNTDIILGVCVNYDLYGITGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYLTNRTFM 680
Query 573 ISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQ 632
I C G VS SSE A+L+++ C V + QL P N F +
Sbjct 681 IRSCYSGRVSAAFHAN--SSEPALLFRNFKCNYVFNNTLSRQLQPI--------NYFDSY 730
Query 633 AGCLIGAEHVDTSY--ECDIPIGAGICASYHTVSLLRSTSQKSIV-AYTMSLGADSSIAY 689
GC++ A++ +S CD+ +G+G C Y T + S++SI Y + ++
Sbjct 731 LGCVVNADNSTSSVVQTCDLTVGSGYCVDYST----KRRSRRSITTGYRFTNFEPFTVNS 786
Query 690 SNNT---------IAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGS 740
N++ I IP+ F+I E + S K ++DC+ ++CGD C + L++YGS
Sbjct 787 VNDSLEPVGGLYEIQIPSEFTIGNMEEFIQTSSPKVTIDCSAFVCGDYAACKSQLVEYGS 846
Query 741 FCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFG------GFNFSQIL----PD 790
FC +N L+ + D +V + T G NFS +L D
Sbjct 847 FCDNINAILTEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSD 906
Query 791 PLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARDLICAQKFNGLTVLPPLLTDD 850
K + RS IEDLLF+KV L+D GF++ Y C G RDLIC Q +NG+ VLPPLL+++
Sbjct 907 CNKVSSRSAIEDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSEN 966
Query 851 MIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFN 910
I+ YT A S + W+ AG +PF + + YR NGIGVT +VL +NQK IAN FN
Sbjct 967 QISGYTLAATSASLFPPWSAAAG----VPFYLNVQYRINGIGVTMDVLSQNQKLIANAFN 1022
Query 911 KAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVE 970
A+ IQE T++AL K+Q VVN NA+ALN L++QLS+ FGAISS L +ILSRLD +E
Sbjct 1023 NALGAIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISSSLQEILSRLDALE 1082
Query 971 AEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH 1030
A+ QIDRLI GRL +L YV+QQL + ++ SA A K++ECV QS R++FCG G H
Sbjct 1083 AQAQIDRLINGRLTALNAYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNH 1142
Query 1031 LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEG-KAYFPREGVFVFNGTSWFITQR 1089
++S Q AP+G+ F+H +YVP++ +P +C G + P+ G FV +W T
Sbjct 1143 IISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGDRGIAPKSGYFVNVNNTWMFTGS 1202
Query 1090 NFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLG 1149
++ P+ IT +N V C V + + + P L FKEELD++FKN TS DL
Sbjct 1203 GYYYPEPITGNNVVVMSTCAVNYTKAPDVMLNISTPNLPDFKEELDQWFKNQTSVAPDL- 1261
Query 1150 DISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAI 1209
+ IN + +++Q E++RL E K LN+S I+L+++G YE Y+KWPWYVWL + G +
Sbjct 1262 SLDYINVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWL--LIGFAGV 1319
Query 1210 VMVTILLCCMTSCCSCLKGACSCGSCCKFDEDDSEPVLK 1248
M+ +L CG CC E V+K
Sbjct 1320 AMLVLLFFICCCTGCGTSCFKKCGGCCDDYTGHQELVIK 1358
Score = 101 bits (251), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 92/362 (25%), Positives = 157/362 (43%), Gaps = 48/362 (13%)
Query 83 FKDGIYFAATEKSNVVRGWV---------FGSTMNNKSQSVIIINNSTNV--------VI 125
F +GI FA + + V++ V GST N S SV++ ++TN+ I
Sbjct 99 FTNGI-FAKVKNTKVIKDGVKYSEFPAITIGSTFVNTSYSVVVQPHTTNLDNKLQGLLEI 157
Query 126 RACNFELCDNPFFAVSKPMGTQTHTMIF--DNAFNCTFEYISDAFSLDVSEKSGNFKHLR 183
C + +C+ P + +G Q + +C ++ F+ DV N +L
Sbjct 158 SVCQYTMCEYPNTICNPNLGNQRVELWHWDTGVVSCLYK---RNFTYDV-----NADYLY 209
Query 184 EFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITNFRAILTAFSPAQD 243
F F + G Y Y + VV K +F + LG ++++ + + A
Sbjct 210 -FHFYQEGGTFYAY--FTDTGVVT---------KFLFNVYLGTVLSHYYVMPLTCNSALT 257
Query 244 IWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTS 303
+ Y+V L ++L ++++G I +AVDC + ++E+KC S G+Y+ +
Sbjct 258 L------EYWVTPLTSKQYLLAFNQDGVIFNAVDCKSDFMSEIKCKTLSIAPSTGVYELN 311
Query 304 NFRVVPSGDVVR-FPNITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFS 362
+ V P DV R PN+ + C N PS WERK SNC + S L +
Sbjct 312 GYTVQPIADVYRRIPNLPD-CNIEAWLNDKSVPSPLNWERKTFSNCNFNMSSLMSFIQAD 370
Query 363 TFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLA 422
+F C + A K+ +CFS++ D F + + G G + +NY++ C L
Sbjct 371 SFTCNNIDAAKIYGMCFSSITIDKFAIPNGRKVDLQLGNLGYLQSFNYRIDTTATSCQLY 430
Query 423 WN 424
+N
Sbjct 431 YN 432
>sp|Q8V436|SPIKE_CVBLU Spike glycoprotein OS=Bovine coronavirus
(strain 98TXSF-110-LUN) OX=233264 GN=S PE=3 SV=1
Length=1363
Score = 473 bits (1217), Expect = 1e-143, Method: Compositional matrix adjust.
Identities = 281/759 (37%), Positives = 411/759 (54%), Gaps = 45/759 (6%)
Query 514 KLSTDLIKNQCVNFNFNGLTGTGVLTP-SSKRFQPFQQFGRDVSDFTDSVRDPKTSEILD 572
K +TD+I CVN++ G+TG G+ ++ + +Q D + RD T+
Sbjct 621 KSNTDIILGVCVNYDLYGITGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYLTNRTFM 680
Query 573 ISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQ 632
I C G VS SSE A+L++++ C V + QL P N F +
Sbjct 681 IRSCYSGRVSAAFHAN--SSEPALLFRNIKCNYVFNNTLSRQLQPI--------NYFDSY 730
Query 633 AGCLIGAEHVDTSY--ECDIPIGAGICASYHTVSLLRSTSQKSIV-AYTMSLGADSSIAY 689
GC++ A++ +S CD+ +G+G C Y T + S++SI Y + ++
Sbjct 731 LGCVVNADNSTSSVVQTCDLTVGSGYCVDYST----KRRSRRSITTGYRFTNFEPFTVNS 786
Query 690 SNNT---------IAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGS 740
N++ I IP+ F+I E + S K ++DC+ ++CGD C + L++YGS
Sbjct 787 VNDSLEPVGGLYEIQIPSEFTIGNMEEFIQTSSPKVTIDCSAFVCGDYAACKSQLVEYGS 846
Query 741 FCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFG------GFNFSQIL----PD 790
FC +N L+ + D +V + T G NFS +L D
Sbjct 847 FCDNINAILTEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSD 906
Query 791 PLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARDLICAQKFNGLTVLPPLLTDD 850
K + RS IEDLLF+KV L+D GF++ Y C G RDLIC Q +NG+ VLPPLL+++
Sbjct 907 CNKVSSRSAIEDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSEN 966
Query 851 MIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFN 910
I+ YT A S + W+ AG +PF + + YR NGIGVT +VL +NQK IAN FN
Sbjct 967 QISGYTLAATSASLFPPWSAAAG----VPFYLNVQYRINGIGVTMDVLSQNQKLIANAFN 1022
Query 911 KAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVE 970
A+ IQE T++AL K+Q VVN NA+ LN L++QLS+ FGAISS L +ILSRLD +E
Sbjct 1023 NALGAIQEGFDATNSALVKIQAVVNANAETLNNLLQQLSNRFGAISSSLQEILSRLDALE 1082
Query 971 AEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH 1030
A+ QIDRLI GRL +L YV+QQL + ++ SA A K++ECV QS R++FCG G H
Sbjct 1083 AQAQIDRLINGRLTALNAYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNH 1142
Query 1031 LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAIC-HEGKAYFPREGVFVFNGTSWFITQR 1089
++S Q AP+G+ F+H +YVP++ +P +C G+ P+ G FV +W T
Sbjct 1143 IISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGGRGIAPKSGYFVNVNNTWMFTGS 1202
Query 1090 NFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLG 1149
++ P+ IT +N V C V + + + P L FKEELD++FKN TS DL
Sbjct 1203 GYYYPEPITGNNVVVMSTCAVNYTKAPDVMLNISTPNLPDFKEELDQWFKNQTSVAPDL- 1261
Query 1150 DISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAI 1209
+ IN + +++Q E++RL E K LN+S I+L+++G YE Y+KWPWYVWL + G +
Sbjct 1262 SLDYINVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWL--LIGFAGV 1319
Query 1210 VMVTILLCCMTSCCSCLKGACSCGSCCKFDEDDSEPVLK 1248
M+ +L CG CC E V+K
Sbjct 1320 AMLVLLFFICCCTGCGTSCFKKCGGCCDDYTGHQELVIK 1358
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 90/362 (25%), Positives = 156/362 (43%), Gaps = 48/362 (13%)
Query 83 FKDGIYFAATEKSNVVRGWVF---------GSTMNNKSQSVIIINNSTNV--------VI 125
F +GI FA + + V++ V GST N S SV++ ++T + I
Sbjct 99 FTNGI-FAKVKNTKVIKDGVMYSEFPAITIGSTFVNTSYSVVVQPHTTILGNKLQGFLEI 157
Query 126 RACNFELCDNPFFAVSKPMGTQTHTMIF--DNAFNCTFEYISDAFSLDVSEKSGNFKHLR 183
C + +C+ P + +G + + +C ++ F+ DV N +L
Sbjct 158 SVCQYTMCEYPNTICNPNLGNRRVELWHWDTGVVSCLYK---RNFTYDV-----NADYLY 209
Query 184 EFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITNFRAILTAFSPAQD 243
F F + G Y Y + VV K +F + LG ++++ + + A
Sbjct 210 -FHFYQEGGTFYAY--FTDTGVVT---------KFLFNVYLGTVLSHYYVMPLTCNSALT 257
Query 244 IWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTS 303
+ Y+V L ++L ++++G I +AVDC + ++E+KC S G+Y+ +
Sbjct 258 L------EYWVTPLTSKQYLLAFNQDGVIFNAVDCKSDFMSEIKCKTLSIAPSTGVYELN 311
Query 304 NFRVVPSGDVVR-FPNITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFS 362
+ V P DV R PN+ + C N PS WERK SNC + S L +
Sbjct 312 GYTVQPIADVYRRIPNLPD-CNIEAWLNDKSVPSPLNWERKTFSNCNFNMSSLMSFIQAD 370
Query 363 TFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLA 422
+F C + A K+ +CFS++ D F + + G G + +NY++ C L
Sbjct 371 SFTCNNIDAAKIYGMCFSSITIDKFAIPNGRKVDLQLGNLGYLQSFNYRIDTTATSCQLY 430
Query 423 WN 424
+N
Sbjct 431 YN 432
>sp|P25190|SPIKE_CVBF Spike glycoprotein OS=Bovine coronavirus
(strain F15) OX=11129 GN=S PE=3 SV=1
Length=1363
Score = 472 bits (1214), Expect = 4e-143, Method: Compositional matrix adjust.
Identities = 281/762 (37%), Positives = 409/762 (54%), Gaps = 51/762 (7%)
Query 514 KLSTDLIKNQCVNFNFNGLTGTGVLTPS-SKRFQPFQQFGRDVSDFTDSVRDPKTSEILD 572
K +TD+I CVN++ G+TG G+ + + + +Q D + RD T+
Sbjct 621 KSNTDIILGVCVNYDLYGITGQGIFVEANATYYNSWQNLLYDSNGNLYGFRDYLTNRTFM 680
Query 573 ISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQ 632
I C G VS SSE A+L++++ C V + QL P N F +
Sbjct 681 IRSCYSGRVSAAFHAN--SSEPALLFRNIKCNYVFNNTLSRQLQPI--------NYFDSY 730
Query 633 AGCLIGAEHVDTS--YECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYS 690
GC++ A++ S CD+ +G+G C Y ST ++S+ A T + ++
Sbjct 731 LGCVVNADNSTASAVQTCDLTVGSGYCVDY-------STKRRSVRAITTGYRFTNFEPFT 783
Query 691 NNT-------------IAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQ 737
N+ I IP+ F+I E + S K ++DC+ ++CGD C + L++
Sbjct 784 VNSVNDSLEPVGGLYEIQIPSEFTIGNMEEFIQTSSPKVTIDCSAFVCGDCAACKSQLVE 843
Query 738 YGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPT-LKYFGGFNFSQILPDPL---- 792
YGSFC +N L+ + D +V + T LK FN I P+
Sbjct 844 YGSFCDNINAILTEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCL 903
Query 793 -----KPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARDLICAQKFNGLTVLPPLL 847
K + RS IEDLLF+KV L+D GF++ Y C G RDLIC Q +NG+ VLPPLL
Sbjct 904 GSECNKVSSRSAIEDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNGIKVLPPLL 963
Query 848 TDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIAN 907
+++ I+ YT A S + W+ AG +PF + + YR NGIGVT +VL +NQK IAN
Sbjct 964 SENQISGYTLAATSASLFPPWSAAAG----VPFYLNVQYRINGIGVTMDVLSQNQKLIAN 1019
Query 908 QFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLD 967
FN A+ IQE T++AL K+Q VVN NA+ALN L++QLS+ FGAISS L +ILSRLD
Sbjct 1020 AFNNALDAIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISSSLQEILSRLD 1079
Query 968 KVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGK 1027
+EA+ QIDRLI GR +L YV+QQL + ++ SA A K++ECV QS R++FCG
Sbjct 1080 ALEAQRQIDRLINGRFTALNAYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGN 1139
Query 1028 GYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEG-KAYFPREGVFVFNGTSWFI 1086
G H++S Q AP+G+ F+H +YVP++ +P +C G + P+ G FV +W
Sbjct 1140 GNHIISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGDRGIAPKSGYFVNVNNTWMF 1199
Query 1087 TQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPLQPELDSFKEELDKYFKNHTSPDV 1146
T ++ P+ IT +N V C V + + + P L FKEELD++FKN TS
Sbjct 1200 TGSGYYYPEPITGNNVVVMSTCAVNYTKAPDVMLNISTPNLPDFKEELDQWFKNQTSVAP 1259
Query 1147 DLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGL 1206
DL + IN + +++Q E++RL E K LN+S I+L+++G YE Y+KWPWYVWL + G
Sbjct 1260 DL-SLDYINVTFLDLQDEMNRLQEAIKLLNQSYINLKDIGTYEYYVKWPWYVWL--LIGF 1316
Query 1207 IAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDEDDSEPVLK 1248
+ M+ +L CG CC E V+K
Sbjct 1317 AGVAMLVLLFFICCCTGCGTSCFKKCGGCCDDYTGHQELVIK 1358
Score = 100 bits (250), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 115/466 (25%), Positives = 190/466 (41%), Gaps = 76/466 (16%)
Query 1 MFIFLLF---LTLTSGSDLDRCTTFD----DVQAPNYTQHTSSMR---GVYYPDEIFRSD 50
MF+ LL + L DL +CTT D P+ + T + G YY D
Sbjct 1 MFLILLISLPMALAVIGDL-KCTTVSINDVDTGVPSISTDTVDVTNGLGTYY-----VLD 54
Query 51 TLYLTQDLFLPFYSNVTGFHTINHTFGNPVI------------PFKDGIYFAATEKSNVV 98
+YL L L Y +G N ++ F +GI FA + + V+
Sbjct 55 RVYLNTTLLLNGYYPTSGSTYRNMALKGTLLLSTLWFKPPFLSDFINGI-FAKVKNTKVI 113
Query 99 RGWVF---------GSTMNNKSQSVIIINNSTNV--------VIRACNFELCDNPFFAVS 141
+ V GST N S SV++ ++TN+ I C + +C+ P
Sbjct 114 KHGVMYSEFPAITIGSTFVNTSYSVVVQPHTTNLDNKLQGLLEISVCQYTMCEYPNTICH 173
Query 142 KPMGTQTHTMIF--DNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKG 199
+G + + +C ++ F+ DV N +L F F + G Y Y
Sbjct 174 PNLGNRRVELWHWDTGVVSCLYK---RNFTYDV-----NADYLY-FHFYQEGGTFYAY-- 222
Query 200 YQPIDVVRDLPSGFNTLKPIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKP 259
+ VV K +F + LG ++++ + + A + Y+V L
Sbjct 223 FTDTGVVT---------KFLFNVYLGTVLSHYYVMPLTCNSAMTL------EYWVTPLTS 267
Query 260 TTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVR-FPN 318
++L ++++G I +AVDC + ++E+KC S G+Y+ + + V P DV R PN
Sbjct 268 KQYLLAFNQDGVIFNAVDCKSDFMSEIKCKTLSIAPSTGVYELNGYTVQPIADVYRRIPN 327
Query 319 ITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLC 378
+ + C N PS WERK SNC + S L + +F C + A K+ +C
Sbjct 328 LPD-CNIEAWLNDKSVPSPLNWERKTFSNCNFNMSSLMSFIQADSFTCNNIDAAKIYGMC 386
Query 379 FSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWN 424
FS++ D F + + G G + +NY++ C L +N
Sbjct 387 FSSITIDKFAIPNGRKVDLQLGNLGYLQSFNYRIDTTATSCQLYYN 432
>sp|P25194|SPIKE_CVBV Spike glycoprotein OS=Bovine coronavirus
(strain vaccine) OX=11134 GN=S PE=3 SV=1
Length=1363
Score = 471 bits (1212), Expect = 7e-143, Method: Compositional matrix adjust.
Identities = 280/758 (37%), Positives = 408/758 (54%), Gaps = 43/758 (6%)
Query 514 KLSTDLIKNQCVNFNFNGLTGTGVLTP-SSKRFQPFQQFGRDVSDFTDSVRDPKTSEILD 572
K +TD+I CVN++ G+TG G+ ++ + +Q D + RD T+
Sbjct 621 KSNTDIILGVCVNYDLYGITGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYLTNRTFM 680
Query 573 ISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQ 632
I C G VS SSE A+L++++ C V + QL P N F +
Sbjct 681 IRSCYSGRVSAAFHAN--SSEPALLFRNIKCNYVFNNTLSRQLQPI--------NYFDSY 730
Query 633 AGCLIGAEHVDTSY--ECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYS 690
GC++ A++ +S CD+ +G+G C Y T R + + Y + ++
Sbjct 731 LGCVVNADNSTSSVVQTCDLTVGSGYCVDYSTK---RRSRRAITTGYRFTNFEPFTVNSV 787
Query 691 NNT---------IAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSF 741
N++ I IP+ F+I E + S K ++DC+ ++CGD C + L++YGSF
Sbjct 788 NDSLEPVGGLYEIQIPSEFTIGNMEEFIQTSSPKVTIDCSAFVCGDYAACKSQLVEYGSF 847
Query 742 CTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFG------GFNFSQIL----PDP 791
C +N L+ + D +V + T G NFS +L D
Sbjct 848 CDNINAILTEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSDC 907
Query 792 LKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARDLICAQKFNGLTVLPPLLTDDM 851
K + RS IEDLLF+KV L+D GF++ Y C G RDLIC Q +NG+ VLPPLL+ +
Sbjct 908 NKVSSRSAIEDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSVNQ 967
Query 852 IAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNK 911
I+ YT A S + W+ AG +PF + + YR NGIGVT +VL +NQK IAN FN
Sbjct 968 ISGYTLAATSASLFPPWSAAAG----VPFYLNVQYRINGIGVTMDVLSQNQKLIANAFNN 1023
Query 912 AISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA 971
A+ IQE T++AL K+Q VVN NA+ALN L++QLS+ FGAISS L +ILSRLD +EA
Sbjct 1024 ALDAIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISSSLQEILSRLDALEA 1083
Query 972 EVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHL 1031
+ QIDRLI GRL +L YV+QQL + ++ SA A K++ECV QS R++FCG G H+
Sbjct 1084 QAQIDRLINGRLTALNAYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNHI 1143
Query 1032 MSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEG-KAYFPREGVFVFNGTSWFITQRN 1090
+S Q AP+G+ F+H +YVP++ +P +C G + P+ G FV +W T
Sbjct 1144 ISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGDRGIAPKSGYFVNVNNTWMFTGSG 1203
Query 1091 FFSPQIITTDNTFVSGNCDVVIGIINNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGD 1150
++ P+ IT +N V C V + + + P L FKEELD++FKN TS DL
Sbjct 1204 YYYPEPITGNNVVVMSTCAVNYTKAPDVMLNISTPNLHDFKEELDQWFKNQTSVAPDL-S 1262
Query 1151 ISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIV 1210
+ IN + +++Q E++RL E K LN+S I+L+++G YE Y+KWPWYVWL + G +
Sbjct 1263 LDYINVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWL--LIGFAGVA 1320
Query 1211 MVTILLCCMTSCCSCLKGACSCGSCCKFDEDDSEPVLK 1248
M+ +L CG CC E V+K
Sbjct 1321 MLVLLFFICCCTGCGTSCFKICGGCCDDYTGHQELVIK 1358
Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 118/467 (25%), Positives = 191/467 (41%), Gaps = 78/467 (17%)
Query 1 MFIFLLF---LTLTSGSDLDRCTTFD----DVQAPNYTQHTSSMR---GVYYPDEIFRSD 50
MF+ LL + DL +CTT D AP+ + T + G YY D
Sbjct 1 MFLILLISLPMAFAVIGDL-KCTTVSINDVDTGAPSISTDTVDVTNGLGTYY-----VLD 54
Query 51 TLYLTQDLFLPFYSNVTGFHTINHTFGNPVI------------PFKDGIYFAATEKSNVV 98
+YL L L Y +G N ++ F +GI FA + + V+
Sbjct 55 RVYLNTTLLLNGYYPTSGSTYRNMALKGTLLLSRLWFKPPFLSDFINGI-FAKVKNTKVI 113
Query 99 RGWVF---------GSTMNNKSQSVIIINNSTNV--------VIRACNFELCDNPFFAVS 141
+ V GST N S SV++ ++TN+ I C + +C+ P
Sbjct 114 KKGVMYSEFPAITIGSTFVNTSYSVVVQPHTTNLDNKLQGLLEISVCQYTMCEYPHTICH 173
Query 142 KPMGTQTHTMIF--DNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKG 199
+G Q + +C ++ F+ DV N +L F F + G Y Y
Sbjct 174 PNLGNQRVELWHWDTGVVSCLYK---RNFTYDV-----NADYLY-FHFYQEGGTFYAY-- 222
Query 200 YQPIDVVRDLPSGFNTLKPIFKLPLGINITNFRAI-LTAFSPAQDIWGTSAAAYFVGYLK 258
+ VV K +F + LG ++++ + LT +S Y+V L
Sbjct 223 FTDTGVVT---------KFLFNVYLGTVLSHYYVLPLTCYSAM-------TLEYWVTPLT 266
Query 259 PTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVR-FP 317
++L ++++G I +AVDC + ++E+KC S G+Y+ + + V P DV R P
Sbjct 267 SKQYLLAFNQDGVIFNAVDCKSDFMSEIKCKTLSIAPSTGVYELNGYTVQPIADVYRRIP 326
Query 318 NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDL 377
N+ + C N PS WERK SNC + S L + +F C + A K+ +
Sbjct 327 NLPD-CNIEAWLNDKSVPSPLNWERKTFSNCNFNMSSLMSFIQADSFTCNNIEAAKIYGM 385
Query 378 CFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWN 424
CFS++ D F + + G G + +NY++ C L +N
Sbjct 386 CFSSITIDKFAIPNGRKVDLQLGNLGYLQSFNYRIDTTAASCQLYYN 432
>sp|P25191|SPIKE_CVBL9 Spike glycoprotein OS=Bovine coronavirus
(strain L9) OX=11130 GN=S PE=1 SV=1
Length=1363
Score = 469 bits (1207), Expect = 4e-142, Method: Compositional matrix adjust.
Identities = 279/758 (37%), Positives = 407/758 (54%), Gaps = 43/758 (6%)
Query 514 KLSTDLIKNQCVNFNFNGLTGTGVLTP-SSKRFQPFQQFGRDVSDFTDSVRDPKTSEILD 572
K +TD+I CVN++ G+TG G+ ++ + +Q D + RD T+
Sbjct 621 KSNTDIILGVCVNYDLYGITGQGIFVEVNAPYYNSWQNLLYDSNGNLYGFRDYLTNRTFM 680
Query 573 ISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQ 632
I C G VS SSE A+L++++ C V + QL P N F +
Sbjct 681 IRSCYSGRVSAAFHAN--SSEPALLFRNIKCNYVFNNTLSRQLQPI--------NYFDSY 730
Query 633 AGCLIGAEHVDTSY--ECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYS 690
GC++ A++ +S CD+ +G+G C Y T R + + Y + ++
Sbjct 731 LGCVVNADNSTSSVVQTCDLTVGSGYCVDYSTK---RRSRRAITTGYRFTNFEPFTVNSV 787
Query 691 NNT---------IAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSF 741
N++ I IP+ F+I E + S K ++DC+ ++CGD C + L++YGSF
Sbjct 788 NDSLEPVGGLYEIQIPSEFTIGNMEEFIQTSSPKVTIDCSAFVCGDYAACKSQLVEYGSF 847
Query 742 CTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFG------GFNFSQIL----PDP 791
C +N L+ + D +V + T G NFS +L D
Sbjct 848 CDNINAILTEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSDC 907
Query 792 LKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARDLICAQKFNGLTVLPPLLTDDM 851
K + RS IEDLLF+KV L+D GF++ Y C G RDLIC Q +NG+ VLPPLL+ +
Sbjct 908 NKVSSRSAIEDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSVNQ 967
Query 852 IAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNK 911
I+ YT A S + W+ AG +PF + + YR NGIGVT +VL +NQK IAN FN
Sbjct 968 ISGYTLAATSASLFPPWSAAAG----VPFYLNVQYRINGIGVTMDVLSQNQKLIANAFNN 1023
Query 912 AISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA 971
A+ IQE T++AL K+Q VVN NA+ALN L++QLS+ FGAISS L +ILSRLD +EA
Sbjct 1024 ALDAIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISSSLQEILSRLDALEA 1083
Query 972 EVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHL 1031
+ QIDRLI GRL +L YV+QQL + ++ SA A K++ECV QS R++FCG G H+
Sbjct 1084 QAQIDRLINGRLTALNAYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNHI 1143
Query 1032 MSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEG-KAYFPREGVFVFNGTSWFITQRN 1090
+S Q AP+G+ F+H +YVP++ +P +C G + P+ G FV +W T
Sbjct 1144 ISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGDRGIAPKSGYFVNVNNTWMFTGSG 1203
Query 1091 FFSPQIITTDNTFVSGNCDVVIGIINNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGD 1150
++ P+ IT +N V C + + + P L FKEELD++FKN TS DL
Sbjct 1204 YYYPEPITGNNVVVMSTCAANYTKAPDVMLNISTPNLHDFKEELDQWFKNQTSVAPDL-S 1262
Query 1151 ISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIV 1210
+ IN + +++Q E++RL E K LN+S I+L+++G YE Y+KWPWYVWL + G +
Sbjct 1263 LDYINVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWL--LIGFAGVA 1320
Query 1211 MVTILLCCMTSCCSCLKGACSCGSCCKFDEDDSEPVLK 1248
M+ +L CG CC E V+K
Sbjct 1321 MLVLLFFICCCTGCGTSCFKICGGCCDDYTGHQELVIK 1358
Score = 100 bits (250), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 91/362 (25%), Positives = 156/362 (43%), Gaps = 48/362 (13%)
Query 83 FKDGIYFAATEKSNVVRGWVF---------GSTMNNKSQSVIIINNSTNV--------VI 125
F +GI FA + + V++ V GST N S SV++ ++TN+ I
Sbjct 99 FINGI-FAKVKNTKVIKKGVMYSEFPAITIGSTFVNTSYSVVVQPHTTNLDNKLQGLLEI 157
Query 126 RACNFELCDNPFFAVSKPMGTQTHTMIF--DNAFNCTFEYISDAFSLDVSEKSGNFKHLR 183
C + +C+ P +G + + +C ++ F+ DV N +L
Sbjct 158 SVCQYTMCEYPHTICHPNLGNKRVELWHWDTGVVSCLYK---RNFTYDV-----NADYLY 209
Query 184 EFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITNFRAILTAFSPAQD 243
F F + G Y Y + VV K +F + LG ++++ + + A
Sbjct 210 -FHFYQEGGTFYAY--FTDTGVVT---------KFLFNVYLGTVLSHYYVLPLTCNSAMT 257
Query 244 IWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTS 303
+ Y+V L ++L ++++G I +AVDC + ++E+KC S G+Y+ +
Sbjct 258 L------EYWVTPLTSKQYLLAFNQDGVIFNAVDCKSDFMSEIKCKTLSIAPSTGVYELN 311
Query 304 NFRVVPSGDVVR-FPNITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFS 362
+ V P DV R PN+ + C N PS WERK SNC + S L +
Sbjct 312 GYTVQPIADVYRRIPNLPD-CNIEAWLNDKSVPSPLNWERKTFSNCNFNMSCLMSFIQAD 370
Query 363 TFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLA 422
+F C + A K+ +CFS++ D F + + G G + +NY++ C L
Sbjct 371 SFTCNNIDAAKIYGMCFSSITIDKFAIPNGRKVDLQLGNLGYLQSFNYRIDTTATSCQLY 430
Query 423 WN 424
+N
Sbjct 431 YN 432
>sp|P15777|SPIKE_CVBM Spike glycoprotein OS=Bovine coronavirus
(strain Mebus) OX=11132 GN=S PE=3 SV=1
Length=1363
Score = 467 bits (1201), Expect = 2e-141, Method: Compositional matrix adjust.
Identities = 279/758 (37%), Positives = 408/758 (54%), Gaps = 43/758 (6%)
Query 514 KLSTDLIKNQCVNFNFNGLTGTGVLTP-SSKRFQPFQQFGRDVSDFTDSVRDPKTSEILD 572
K +TD+I CVN++ G+TG G+ ++ + +Q D + RD T+
Sbjct 621 KSNTDIILGVCVNYDLYGITGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYLTNRTFM 680
Query 573 ISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQ 632
I C G VS SSE A+L++++ C V + QL P N F +
Sbjct 681 IRSCYSGRVSAAFHAN--SSEPALLFRNIKCNYVFNNTLSRQLQPI--------NYFDSY 730
Query 633 AGCLIGAEHVDTSY--ECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYS 690
GC++ A++ +S CD+ +G+G C Y T R + + Y + ++
Sbjct 731 LGCVVNADNSTSSVVQTCDLTVGSGYCVDYSTK---RRSRRAITTGYRFTTFEPFTVNSV 787
Query 691 NNT---------IAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSF 741
N++ I IP+ F+I E + S K ++DC+ ++CGD C + L++YGSF
Sbjct 788 NDSLEPVGGLYEIQIPSEFTIGNMEEFIQTSSPKVTIDCSAFVCGDYAACKSQLVEYGSF 847
Query 742 CTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFG------GFNFSQIL----PDP 791
C +N L+ + D +V + T G NFS +L D
Sbjct 848 CDNINAILTEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSDC 907
Query 792 LKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARDLICAQKFNGLTVLPPLLTDDM 851
K + RS IEDLLF+KV L+D GF++ Y C G RDLIC Q +NG+ VLPPLL+ +
Sbjct 908 NKVSSRSAIEDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSVNQ 967
Query 852 IAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNK 911
I+ YT A S + + AA+ +PF + + YR NGIGVT +VL +NQK IAN FN
Sbjct 968 ISGYTLAATSASLFPPLS----AAVGVPFYLNVQYRINGIGVTMDVLSQNQKLIANAFNN 1023
Query 912 AISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA 971
A+ IQE T++AL K+Q VVN NA+ALN L++QLS+ FGAISS L +ILSRLD +EA
Sbjct 1024 ALDAIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISSSLQEILSRLDALEA 1083
Query 972 EVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHL 1031
+ QIDRLI GRL +L YV+QQL + ++ SA A K++ECV QS R++FCG G H+
Sbjct 1084 QAQIDRLINGRLTALNVYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNHI 1143
Query 1032 MSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEG-KAYFPREGVFVFNGTSWFITQRN 1090
+S Q AP+G+ F+H +YVP++ +P +C G + P+ G FV +W T
Sbjct 1144 ISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGDRGIAPKSGYFVNVNNTWMFTGSG 1203
Query 1091 FFSPQIITTDNTFVSGNCDVVIGIINNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGD 1150
++ P+ IT +N V C V + + + P L FKEELD++FKN TS DL
Sbjct 1204 YYYPEPITGNNVVVMSTCAVNYTKAPDVMLNISTPNLHDFKEELDQWFKNQTSVAPDL-S 1262
Query 1151 ISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIV 1210
+ IN + +++Q E++RL E K LN+S I+L+++G YE Y+KWPWYVWL + G +
Sbjct 1263 LDYINVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWL--LIGFAGVA 1320
Query 1211 MVTILLCCMTSCCSCLKGACSCGSCCKFDEDDSEPVLK 1248
M+ +L CG CC E V+K
Sbjct 1321 MLVLLFFICCCTGCGTSCFKICGGCCDDYTGHQELVIK 1358
Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 92/362 (25%), Positives = 156/362 (43%), Gaps = 48/362 (13%)
Query 83 FKDGIYFAATEKSNVVRGWVF---------GSTMNNKSQSVIIINNSTNV--------VI 125
F +GI FA + + V++ V GST N S SV++ ++TN+ I
Sbjct 99 FINGI-FAKVKNTKVIKKGVMYSEFPAITIGSTFVNTSYSVVVQPHTTNLDNKLQGLLEI 157
Query 126 RACNFELCDNPFFAVSKPMGTQTHTMIF--DNAFNCTFEYISDAFSLDVSEKSGNFKHLR 183
C + +C+ P +G + + +C ++ F+ DV N +L
Sbjct 158 SVCQYTMCEYPHTICHPNLGNKRVELWHWDTGVVSCLYK---RNFTYDV-----NADYLY 209
Query 184 EFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITNFRAILTAFSPAQD 243
F F + G Y Y + VV K +F + LG ++++ + S A
Sbjct 210 -FHFYQEGGTFYAY--FTDTGVVT---------KFLFNVYLGTVLSHYYVLPLTCSSAMT 257
Query 244 IWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTS 303
+ Y+V L ++L ++++G I +AVDC + ++E+KC S G+Y+ +
Sbjct 258 L------EYWVTPLTSKQYLLAFNQDGVIFNAVDCKSDFMSEIKCKTLSIAPSTGVYELN 311
Query 304 NFRVVPSGDVVR-FPNITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFS 362
+ V P DV R PN+ + C N PS WERK SNC + S L +
Sbjct 312 GYTVQPIADVYRRIPNLPD-CNIEAWLNDKSVPSPLNWERKTFSNCNFNMSSLMSFIQAD 370
Query 363 TFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLA 422
+F C + A K+ +CFS++ D F + + G G + +NY++ C L
Sbjct 371 SFTCNNIDAAKIYGMCFSSITIDKFAIPNGRKVDLQLGNLGYLQSFNYRIDTTATSCQLY 430
Query 423 WN 424
+N
Sbjct 431 YN 432
>sp|P25193|SPIKE_CVBQ Spike glycoprotein OS=Bovine coronavirus
(strain Quebec) OX=11133 GN=S PE=3 SV=2
Length=1363
Score = 466 bits (1198), Expect = 6e-141, Method: Compositional matrix adjust.
Identities = 279/758 (37%), Positives = 408/758 (54%), Gaps = 43/758 (6%)
Query 514 KLSTDLIKNQCVNFNFNGLTGTGVLTP-SSKRFQPFQQFGRDVSDFTDSVRDPKTSEILD 572
K +TD+I CVN++ G+TG G+ ++ + +Q D + RD T+
Sbjct 621 KSNTDIILGVCVNYDLYGITGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYLTNRTFM 680
Query 573 ISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQ 632
I C G VS SSE A+L++++ C V + QL P N F +
Sbjct 681 IRSCYSGRVSAAFHAN--SSEPALLFRNIKCNYVFNNTLSRQLQPI--------NYFDSY 730
Query 633 AGCLIGAEHVDTSY--ECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYS 690
GC++ A++ +S CD+ +G+G C Y T R + + Y + ++
Sbjct 731 LGCVVNADNSTSSVVQTCDLTVGSGYCVDYSTK---RRSRRAITTGYRFTNFEPFTVNSV 787
Query 691 NNT---------IAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSF 741
N++ I IP+ F+I E + S K ++DC+ ++CGD C + L++YGSF
Sbjct 788 NDSLEPVGGLYEIQIPSEFTIGNMEEFIQTSSPKVTIDCSAFVCGDYAACKSQLVEYGSF 847
Query 742 CTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPT-LKYFGGFNFSQILPDPL-------- 792
C +N L+ + D +V + T LK FN I P+
Sbjct 848 CDNINAILTEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSAC 907
Query 793 -KPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARDLICAQKFNGLTVLPPLLTDDM 851
K + RS IEDLLF+KV L+D GF++ Y C G RDLIC Q +NG+ VLPPLL+ +
Sbjct 908 NKVSSRSAIEDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSVNQ 967
Query 852 IAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNK 911
I+ YT A S + + AA+ +PF + + YR NGIGVT +VL +NQK IAN FN
Sbjct 968 ISGYTLAATSASLFPPLS----AAVGVPFYLNVQYRINGIGVTMDVLSQNQKLIANAFNN 1023
Query 912 AISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA 971
A+ IQE T++AL K+Q VVN NA+ALN L++QLS+ FGAISS L +ILSRLD +EA
Sbjct 1024 ALDAIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISSSLQEILSRLDALEA 1083
Query 972 EVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHL 1031
+ QIDRLI GRL +L YV+QQL + ++ SA A K++ECV QS R++FCG G H+
Sbjct 1084 QAQIDRLINGRLTALNVYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNHI 1143
Query 1032 MSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEG-KAYFPREGVFVFNGTSWFITQRN 1090
+S Q AP+G+ F+H +YVP++ +P +C G + P+ G FV +W T
Sbjct 1144 ISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGDRGIAPKSGYFVNVNNTWMFTGSG 1203
Query 1091 FFSPQIITTDNTFVSGNCDVVIGIINNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGD 1150
++ P+ IT +N V C V + + + P L FKEELD++FKN TS DL
Sbjct 1204 YYYPEPITGNNVVVMSTCAVNYTKAPDVMLNISTPNLHDFKEELDQWFKNQTSVAPDL-S 1262
Query 1151 ISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIV 1210
+ IN + +++Q E++RL E K LN+S I+L+++G YE Y+KWPWYVWL + G +
Sbjct 1263 LDYINVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWL--LIGFAGVA 1320
Query 1211 MVTILLCCMTSCCSCLKGACSCGSCCKFDEDDSEPVLK 1248
M+ +L CG CC E V+K
Sbjct 1321 MLVLLFFICCCTGCGTSCFKICGGCCDDYTGHQELVIK 1358
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 92/362 (25%), Positives = 156/362 (43%), Gaps = 48/362 (13%)
Query 83 FKDGIYFAATEKSNVVRGWVF---------GSTMNNKSQSVIIINNSTNV--------VI 125
F +GI FA + + V++ V GST N S SV++ ++TN+ I
Sbjct 99 FINGI-FAKVKNTKVIKKGVMYSEFPAITIGSTFVNTSYSVVVQPHTTNLDNKLQGLLEI 157
Query 126 RACNFELCDNPFFAVSKPMGTQTHTMIF--DNAFNCTFEYISDAFSLDVSEKSGNFKHLR 183
C + +C+ P +G + + +C ++ F+ DV N +L
Sbjct 158 SVCQYTMCEYPHTICHPKLGNKRVELWHWDTGVVSCLYK---RNFTYDV-----NADYLY 209
Query 184 EFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITNFRAILTAFSPAQD 243
F F + G Y Y + VV K +F + LG ++++ + S A
Sbjct 210 -FHFYQEGGTFYAY--FTDTGVVT---------KFLFNVYLGTVLSHYYVLPLTCSSAMT 257
Query 244 IWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTS 303
+ Y+V L ++L ++++G I +AVDC + ++E+KC S G+Y+ +
Sbjct 258 L------EYWVTPLTSKQYLLAFNQDGVIFNAVDCKSDFMSEIKCKTLSIAPSTGVYELN 311
Query 304 NFRVVPSGDVVR-FPNITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFS 362
+ V P DV R PN+ + C N PS WERK SNC + S L +
Sbjct 312 GYTVQPIADVYRRIPNLPD-CNIEAWLNDKSVPSPLNWERKTFSNCNFNMSSLMSFIQAD 370
Query 363 TFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLA 422
+F C + A K+ +CFS++ D F + + G G + +NY++ C L
Sbjct 371 SFTCNNIDAAKIYGMCFSSITIDKFAIPNGRKVDLQLGNLGYLQSFNYRIDTTATSCQLY 430
Query 423 WN 424
+N
Sbjct 431 YN 432
>sp|Q0ZME7|SPIKE_CVHN5 Spike glycoprotein OS=Human coronavirus
HKU1 (isolate N5) OX=443241 GN=S PE=1 SV=1
Length=1351
Score = 457 bits (1175), Expect = 1e-137, Method: Compositional matrix adjust.
Identities = 274/762 (36%), Positives = 411/762 (54%), Gaps = 60/762 (8%)
Query 508 ATVCGPKL---STDLIKNQCVNFNFNGLTGTGVLTP-SSKRFQPFQQFGRDVSDFTDSVR 563
T C L +T++ CVN++ G+TG G+ S+ + +Q D + +
Sbjct 600 GTTCSNDLLYSNTEISTGVCVNYDLYGITGQGIFKEVSAAYYNNWQNLLYDSNGNIIGFK 659
Query 564 DPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYS 623
D T++ I PC G VS SS A+LY+++ C+ V I +
Sbjct 660 DFLTNKTYTILPCYSGRVSA--AFYQNSSSPALLYRNLKCSYVLNNIS----------FI 707
Query 624 TGNNVFQTQAGCLIGAEHVDTSYE---CDIPIGAGICASYHTVSLLRSTSQKSIVAYTMS 680
+ F + GC++ A ++ TSY CD+ +G+G C Y S R S Y
Sbjct 708 SQPFYFDSYLGCVLNAVNL-TSYSVSSCDLRMGSGFCIDYALPSSRRKRRGIS-SPYRFV 765
Query 681 LGADSSIAYSNNT---------IAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTEC 731
++++ N++ I IPTNF+I+ E + S K ++DC+ ++C + C
Sbjct 766 TFEPFNVSFVNDSVETVGGLFEIQIPTNFTIAGHEEFIQTSSPKVTIDCSAFVCSNYAAC 825
Query 732 ANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQ------MYKTPTLKYFGGFNFS 785
+LL +YG+FC +N L+ + D +V + Q T +F
Sbjct 826 HDLLSEYGTFCDNINSILNEVNDLLDITQLQVANALMQGVTLSSNLNTNLHSDVDNIDFK 885
Query 786 QILP---DPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARDLICAQKFNGLTV 842
+L + RS +EDLLFNKV L+D GF++ Y C G RDL+C Q FNG+ V
Sbjct 886 SLLGCLGSQCGSSSRSLLEDLLFNKVKLSDVGFVEAYNNCTGGSEIRDLLCVQSFNGIKV 945
Query 843 LPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQ 902
LPP+L++ I+ YT A W+ AG +PF++ + YR NG+GVT +VL +NQ
Sbjct 946 LPPILSETQISGYTTAATVAAMFPPWSAAAG----VPFSLNVQYRINGLGVTMDVLNKNQ 1001
Query 903 KQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDI 962
K IAN FNKA+ IQ T T++AL K+Q VVN NAQALN+L++QL + FGAISS L +I
Sbjct 1002 KLIANAFNKALLSIQNGFTATNSALAKIQSVVNANAQALNSLLQQLFNKFGAISSSLQEI 1061
Query 963 LSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRV 1022
LSRLD +EA+VQIDRLI GRL +L YV+QQL I+A A+ A K++ECV QS R+
Sbjct 1062 LSRLDNLEAQVQIDRLINGRLTALNAYVSQQLSDITLIKAGASRAIEKVNECVKSQSPRI 1121
Query 1023 DFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEG-KAYFPREGVFVFNG 1081
+FCG G H++S Q AP+G++F+H +Y P+ + +P +C G + P++G F+
Sbjct 1122 NFCGNGNHILSLVQNAPYGLLFIHFSYKPTSFKTVLVSPGLCLSGDRGIAPKQGYFIKQN 1181
Query 1082 TSWFITQRNFFSPQIITTDNTFVSGNCDVVIG-----IINNTVYDPLQPELDSFKEELDK 1136
SW T +++ P+ I+ N +C V +NN++ P L F+ EL
Sbjct 1182 DSWMFTGSSYYYPEPISDKNVVFMNSCSVNFTKAPFIYLNNSI-----PNLSDFEAELSL 1236
Query 1137 YFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPW 1196
+FKNHTS +L S INA+ +++ E++ + E K+LN S I+L+E+G YE Y+KWPW
Sbjct 1237 WFKNHTSIAPNLTFNSHINATFLDLYYEMNVIQESIKSLNSSFINLKEIGTYEMYVKWPW 1296
Query 1197 YVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGAC--SCGSCC 1236
Y+WL + I +M+ +CC T C S AC C +CC
Sbjct 1297 YIWLLIVILFIIFLMILFFICCCTGCGS----ACFSKCHNCC 1334
Score = 110 bits (275), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 97/379 (26%), Positives = 164/379 (43%), Gaps = 30/379 (8%)
Query 102 VFGSTMNNKSQSVIIINNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFN-CT 160
V GS N S ++++ ++ + I AC + +C+ P + + D++ C
Sbjct 125 VIGSVFVNTSYTIVVQPHNGILEITACQYTMCEYPHTVCKSKGSIRNESWHIDSSEPLCL 184
Query 161 FEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIF 220
F+ F+ +VS F F + G Y Y DV +P+ F +F
Sbjct 185 FK---KNFTYNVSAD------WLYFHFYQERGVFYAYYA----DV--GMPTTF-----LF 224
Query 221 KLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQ 280
L LG ++++ + + Y+V L ++L +DE+G IT+AVDCS
Sbjct 225 SLYLGTILSHYYVMPLTCNAISSNTDNETLEYWVTPLSRRQYLLNFDEHGVITNAVDCSS 284
Query 281 NPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVV-RFPNITNLCPFGEVFNATKFPSVYA 339
+ L+E++C +SF + G+Y S F V P V R PN+ + C N PS
Sbjct 285 SFLSEIQCKTQSFAPNTGVYDLSGFTVKPVATVYRRIPNLPD-CDIDNWLNNVSVPSPLN 343
Query 340 WERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAP 399
WER+ SNC + S L +F C + +K+ CF+++ D F + +
Sbjct 344 WERRIFSNCNFNLSTLLRLVHVDSFSCNNLDKSKIFGSCFNSITVDKFAIPNRRRDDLQL 403
Query 400 GQTGVIADYNYKLPDDFMGCVLAWNTRNIDATSTGNYNYKYRYLRHG----KLRPFERDI 455
G +G + NYK+ C L ++ ++ T N+N R+G L ++
Sbjct 404 GSSGFLQSSNYKIDISSSSCQLYYSLPLVNVT-INNFNPSSWNRRYGFGSFNLSSYDVVY 462
Query 456 SNVPFS--PDGKPCTPPAL 472
S+ FS D PC P++
Sbjct 463 SDHCFSVNSDFCPCADPSV 481
>sp|P36334|SPIKE_CVHOC Spike glycoprotein OS=Human coronavirus
OC43 OX=31631 GN=S PE=1 SV=1
Length=1353
Score = 455 bits (1171), Expect = 3e-137, Method: Compositional matrix adjust.
Identities = 276/758 (36%), Positives = 400/758 (53%), Gaps = 43/758 (6%)
Query 514 KLSTDLIKNQCVNFNFNGLTGTGVLTP-SSKRFQPFQQFGRDVSDFTDSVRDPKTSEILD 572
K +TD+I CVN++ G+ G G+ ++ + +Q D + RD +
Sbjct 611 KANTDIILGVCVNYDLYGILGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYIINRTFM 670
Query 573 ISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQ 632
I C G VS SSE A+L++++ C V QL P N F +
Sbjct 671 IRSCYSGRVSAAFHAN--SSEPALLFRNIKCNYVFNNSLTRQLQPI--------NYFDSY 720
Query 633 AGCLIGAEHVD--TSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYS 690
GC++ A + + CD+ +G+G C Y S R + Y + ++
Sbjct 721 LGCVVNAYNSTAISVQTCDLTVGSGYCVDY---SKNRRSRGAITTGYRFTNFEPFTVNSV 777
Query 691 NNT---------IAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSF 741
N++ I IP+ F+I E + S K ++DC ++CGD C + L++YGSF
Sbjct 778 NDSLEPVGGLYEIQIPSEFTIGNMVEFIQTSSPKVTIDCAAFVCGDYAACKSQLVEYGSF 837
Query 742 CTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPT-LKYFGGFNFSQILPDPL-------- 792
C +N L+ + D +V + T LK FN I P+
Sbjct 838 CDNINAILTEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSEC 897
Query 793 -KPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARDLICAQKFNGLTVLPPLLTDDM 851
K + RS IEDLLF+KV L+D GF++ Y C G RDLIC Q + G+ VLPPLL+++
Sbjct 898 SKASSRSAIEDLLFDKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYKGIKVLPPLLSENQ 957
Query 852 IAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNK 911
I+ YT A S + WT AG +PF + + YR NG+GVT +VL +NQK IAN FN
Sbjct 958 ISGYTLAATSASLFPPWTAAAG----VPFYLNVQYRINGLGVTMDVLSQNQKLIANAFNN 1013
Query 912 AISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA 971
A+ IQE T++AL K+Q VVN NA+ALN L++QLS+ FGAIS+ L +ILSRLD +EA
Sbjct 1014 ALYAIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISASLQEILSRLDALEA 1073
Query 972 EVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHL 1031
E QIDRLI GRL +L YV+QQL + ++ SA A K++ECV QS R++FCG G H+
Sbjct 1074 EAQIDRLINGRLTALNAYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNHI 1133
Query 1032 MSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEG-KAYFPREGVFVFNGTSWFITQRN 1090
+S Q AP+G+ F+H +YVP++ +P +C G + P+ G FV +W T
Sbjct 1134 ISLVQNAPYGLYFIHFSYVPTKYVTARVSPGLCIAGDRGIAPKSGYFVNVNNTWMYTGSG 1193
Query 1091 FFSPQIITTDNTFVSGNCDVVIGIINNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGD 1150
++ P+ IT +N V C V + + P L FKEELD++FKN TS DL
Sbjct 1194 YYYPEPITENNVVVMSTCAVNYTKAPYVMLNTSIPNLPDFKEELDQWFKNQTSVAPDL-S 1252
Query 1151 ISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIV 1210
+ IN + +++Q E++RL E K LN+S I+L+++G YE Y+KWPWYVWL + L +
Sbjct 1253 LDYINVTFLDLQVEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWL--LICLAGVA 1310
Query 1211 MVTILLCCMTSCCSCLKGACSCGSCCKFDEDDSEPVLK 1248
M+ +L CG CC E V+K
Sbjct 1311 MLVLLFFICCCTGCGTSCFKKCGGCCDDYTGYQELVIK 1348
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 105/442 (24%), Positives = 183/442 (41%), Gaps = 70/442 (16%)
Query 50 DTLYLTQDLFLPFYSNVTGFHTINHTFGNPVI------------PFKDGIYFAATEKSNV 97
D +YL LFL Y +G N V+ F +GI FA + + V
Sbjct 54 DRVYLNTTLFLNGYYPTSGSTYRNMALKGSVLLSRLWFKPPFLSDFINGI-FAKVKNTKV 112
Query 98 VRGWVF---------GSTMNNKSQSVII----INNSTN--------VVIRACNFELCDNP 136
++ V GST N S SV++ IN++ + + + C + +C+ P
Sbjct 113 IKDRVMYSEFPAITIGSTFVNTSYSVVVQPRTINSTQDGDNKLQGLLEVSVCQYNMCEYP 172
Query 137 FFAVSKPMGTQTHTM--IFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFL 194
+G + + +C ++ F+ DV N +L F F + G
Sbjct 173 QTICHPNLGNHRKELWHLDTGVVSCLYK---RNFTYDV-----NADYLY-FHFYQEGGTF 223
Query 195 YVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITNFRAI-LTAFSPAQDIWGTSAAAYF 253
Y Y + VV K +F + LG+ ++++ + LT S Y+
Sbjct 224 YAY--FTDTGVVT---------KFLFNVYLGMALSHYYVMPLTCNSKL-------TLEYW 265
Query 254 VGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDV 313
V L ++L ++++G I +A DC + ++E+KC +S G+Y+ + + V P DV
Sbjct 266 VTPLTSRQYLLAFNQDGIIFNAEDCMSDFMSEIKCKTQSIAPPTGVYELNGYTVQPIADV 325
Query 314 VRF-PNITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSAT 372
R PN+ N C N PS WERK SNC + S L + +F C + A
Sbjct 326 YRRKPNLPN-CNIEAWLNDKSVPSPLNWERKTFSNCNFNMSSLMSFIQADSFTCNNIDAA 384
Query 373 KLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWN--TRNIDA 430
K+ +CFS++ D F + + G G + +NY++ C L +N N+
Sbjct 385 KIYGMCFSSITIDKFAIPNGRKVDLQLGNLGYLQSFNYRIDTTATSCQLYYNLPAANVSV 444
Query 431 T--STGNYNYKYRYLRHGKLRP 450
+ + +N ++ ++ +P
Sbjct 445 SRFNPSTWNKRFGFIEDSVFKP 466
>sp|Q14EB0|SPIKE_CVHN2 Spike glycoprotein OS=Human coronavirus
HKU1 (isolate N2) OX=443240 GN=S PE=3 SV=1
Length=1351
Score = 455 bits (1170), Expect = 5e-137, Method: Compositional matrix adjust.
Identities = 273/762 (36%), Positives = 410/762 (54%), Gaps = 60/762 (8%)
Query 508 ATVCGPKL---STDLIKNQCVNFNFNGLTGTGVLTP-SSKRFQPFQQFGRDVSDFTDSVR 563
T C L +T++ CVN++ G+TG G+ S+ + +Q D + +
Sbjct 600 GTTCSNDLLYSNTEVSTGVCVNYDLYGITGQGIFKEVSAAYYNNWQNLLYDSNGNIIGFK 659
Query 564 DPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYS 623
D T++ I PC G VS SS A+LY+++ C+ V I +
Sbjct 660 DFLTNKTYTILPCYSGRVSA--AFYQNSSSPALLYRNLKCSYVLNNIS----------FI 707
Query 624 TGNNVFQTQAGCLIGAEHVDTSYE---CDIPIGAGICASYHTVSLLRSTSQKSIVAYTMS 680
+ F + GC++ A ++ TSY CD+ +G+G C Y S R S Y
Sbjct 708 SQPFYFDSYLGCVLNAVNL-TSYSVSSCDLRMGSGFCIDYALPSSRRKRRGIS-SPYRFV 765
Query 681 LGADSSIAYSNNT---------IAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTEC 731
++++ N++ I IPTNF+I+ E + S K ++DC+ ++C + C
Sbjct 766 TFEPFNVSFVNDSVETVGGLFEIQIPTNFTIAGHEEFIQTSSPKVTIDCSAFVCSNYAAC 825
Query 732 ANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQ------MYKTPTLKYFGGFNFS 785
+LL +YG+FC +N L+ + D +V + Q T +F
Sbjct 826 HDLLSEYGTFCDNINSILNEVNDLLDITQLQVANALMQGVTLSSNLNTNLHSDVDNIDFK 885
Query 786 QILP---DPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARDLICAQKFNGLTV 842
+L + RS +EDLLFNKV L+D GF++ Y C G RDL+C Q FNG+ V
Sbjct 886 SLLGCLGSQCGSSSRSLLEDLLFNKVKLSDVGFVEAYNNCTGGSEIRDLLCVQSFNGIKV 945
Query 843 LPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQ 902
LPP+L++ I+ YT A W+ AG +PF++ + YR NG+GVT +VL +NQ
Sbjct 946 LPPILSETQISGYTTAATVAAMFPPWSAAAG----VPFSLNVQYRINGLGVTMDVLNKNQ 1001
Query 903 KQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDI 962
K IAN FNKA+ IQ T T++AL K+Q VVN NAQALN+L++QL + FGAISS L +I
Sbjct 1002 KLIANAFNKALLSIQNGFTATNSALAKIQSVVNANAQALNSLLQQLFNKFGAISSSLQEI 1061
Query 963 LSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRV 1022
LSRLD +EA+VQIDRLI GRL +L YV+QQL I+A A+ A K++ECV QS R+
Sbjct 1062 LSRLDNLEAQVQIDRLINGRLTALNAYVSQQLSDITLIKAGASRAIEKVNECVKSQSPRI 1121
Query 1023 DFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEG-KAYFPREGVFVFNG 1081
+FCG G H++S Q AP+G++F+H +Y P+ + +P +C G + P++G F+
Sbjct 1122 NFCGNGNHILSLVQNAPYGLLFIHFSYKPTSFKTVLVSPGLCLSGDRGIAPKQGYFIKQN 1181
Query 1082 TSWFITQRNFFSPQIITTDNTFVSGNCDVVIG-----IINNTVYDPLQPELDSFKEELDK 1136
SW T +++ P+ I+ N +C V +NN++ P L F+ E
Sbjct 1182 DSWMFTGSSYYYPEPISDKNVVFMNSCSVNFTKAPFIYLNNSI-----PNLSDFEAEFSL 1236
Query 1137 YFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPW 1196
+FKNHTS +L S INA+ +++ E++ + E K+LN S I+L+E+G YE Y+KWPW
Sbjct 1237 WFKNHTSIAPNLTFNSHINATFLDLYYEMNVIQESIKSLNSSFINLKEIGTYEMYVKWPW 1296
Query 1197 YVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGAC--SCGSCC 1236
Y+WL + I +M+ +CC T C S AC C +CC
Sbjct 1297 YIWLLIVILFIIFLMILFFICCCTGCGS----ACFSKCHNCC 1334
Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 96/379 (25%), Positives = 163/379 (43%), Gaps = 30/379 (8%)
Query 102 VFGSTMNNKSQSVIIINNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFN-CT 160
V GS N S ++++ ++ + I AC + +C+ P + + D++ C
Sbjct 125 VIGSVFVNTSYTIVVQPHNGILEITACQYTMCEYPHTVCKSKGSIRNESWHIDSSEPLCL 184
Query 161 FEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIF 220
F+ F+ +VS F F + G Y Y DV +P+ F +F
Sbjct 185 FK---KNFTYNVSAD------WLYFHFYQERGVFYAYYA----DV--GMPTTF-----LF 224
Query 221 KLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQ 280
L LG ++++ + Y+V L ++L +DE+G IT+AVDCS
Sbjct 225 SLYLGTILSHYYVMPLTCKAISSNTDNETLEYWVTPLSRRQYLLNFDEHGVITNAVDCSS 284
Query 281 NPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVV-RFPNITNLCPFGEVFNATKFPSVYA 339
+ L+E++C +SF + G+Y S F V P V R PN+ + C N PS
Sbjct 285 SFLSEIQCKTQSFAPNTGVYDLSGFTVKPVATVYRRIPNLPD-CDIDNWLNNVSVPSPLN 343
Query 340 WERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAP 399
WER+ SNC + S L +F C + +K+ CF+++ D F + +
Sbjct 344 WERRIFSNCNFNLSTLLRLVHVDSFSCNNLDKSKIFGSCFNSITVDKFAIPNRRRDDLQL 403
Query 400 GQTGVIADYNYKLPDDFMGCVLAWNTRNIDATSTGNYNYKYRYLRHG----KLRPFERDI 455
G +G + NYK+ C L ++ ++ T N+N R+G + ++
Sbjct 404 GSSGFLQSSNYKIDISSSSCQLYYSLPLVNVT-INNFNPSSWNRRYGFGSFNVSSYDVVY 462
Query 456 SNVPFS--PDGKPCTPPAL 472
S+ FS D PC P++
Sbjct 463 SDHCFSVNSDFCPCADPSV 481
>sp|Q8BB25|SPIKE_CVP67 Spike glycoprotein OS=Porcine hemagglutinating
encephalomyelitis virus (strain 67N) OX=230237 GN=S
PE=3 SV=1
Length=1349
Score = 449 bits (1156), Expect = 4e-135, Method: Compositional matrix adjust.
Identities = 276/768 (36%), Positives = 408/768 (53%), Gaps = 48/768 (6%)
Query 508 ATVCGPKL---STDLIKNQCVNFNFNGLTGTGVLTP-SSKRFQPFQQFGRDVSDFTDSVR 563
T C L +T + + CVN++ G+TG G+L ++ + +Q D S R
Sbjct 598 GTTCSTDLQQGNTIITTDVCVNYDLYGITGQGILIEVNATYYNSWQNLLYDSSGNLYGFR 657
Query 564 DPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDV--STAIHADQLTPAWRI 621
D ++ I C G VS + SSE A++++++ C+ V +T + QL
Sbjct 658 DYLSNRTFLIRSCYSGRVSAVFHAN--SSEPALMFRNLKCSHVFNNTILRQIQLV----- 710
Query 622 YSTGNNVFQTQAGCLIGAEHVDTSY--ECDIPIGAGICASYHTVSLLRSTSQ-------K 672
N F + GC++ A + S CD+ +G+G C Y V+ LRS
Sbjct 711 -----NYFDSYLGCVVNAYNNTASAVSTCDLTVGSGYCVDY--VTALRSRRSFTTGYRFT 763
Query 673 SIVAYTMSLGADSSIAYSN-NTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTEC 731
+ + +L DS I IP+ F+I E + K ++DC ++CGD C
Sbjct 764 NFEPFAANLVNDSIEPVGGLYEIQIPSEFTIGNLEEFIQTRSPKVTIDCATFVCGDYAAC 823
Query 732 ANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPT-LKYFGGFNFSQILPD 790
L +YGSFC +N L+ + D +V + T +K FN I
Sbjct 824 RQQLAEYGSFCENINAILTEVNELLDTTQLQVANSLMNGVTLSTKIKDGINFNVDDINFS 883
Query 791 PL---------KPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARDLICAQKFNGLT 841
P+ + + RS IEDLLF+KV L+D GF++ Y C G RDLIC Q +NG+
Sbjct 884 PVLGCLGSECNRASTRSAIEDLLFDKVKLSDVGFVQAYNNCTGGAEIRDLICVQSYNGIK 943
Query 842 VLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYEN 901
VLPPLL+++ I+ YT A + + WT AG +PF + + YR NG+GVT +VL +N
Sbjct 944 VLPPLLSENQISGYTLAATAASLFPPWTAAAG----VPFYLNVQYRINGLGVTMDVLSQN 999
Query 902 QKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLND 961
QK IA+ FN A+ IQE T++AL K+Q VVN NA+ALN L++QLS+ FGAIS+ L +
Sbjct 1000 QKLIASAFNNALDAIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISASLQE 1059
Query 962 ILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKR 1021
ILSRLD +EA+ QIDRLI GRL +L YV+QQL + ++ SA A K++ECV QS R
Sbjct 1060 ILSRLDALEAKAQIDRLINGRLTALNAYVSQQLSDSTLVKFSAAQAIEKVNECVKSQSSR 1119
Query 1022 VDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGK-AYFPREGVFVFN 1080
++FCG G H++S Q AP+G+ F+H +YVP++ +P +C G P+ G F+
Sbjct 1120 INFCGNGNHIISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGDIGISPKSGYFINV 1179
Query 1081 GTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPLQPELDSFKEELDKYFKN 1140
SW T +++ P+ IT +N V C V + + + P L FKEEL ++FKN
Sbjct 1180 NNSWMFTGSSYYYPEPITQNNVVVMSTCAVNYTKAPDLMLNTSTPNLPDFKEELYQWFKN 1239
Query 1141 HTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWL 1200
+S DL + IN + +++Q E++RL E K LN+S I+L+++G YE Y+KWPWYVWL
Sbjct 1240 QSSVAPDL-SLDYINVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWL 1298
Query 1201 GFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDEDDSEPVLK 1248
+ GL + M+ +L CG CC E V+K
Sbjct 1299 --LIGLAGVAMLVLLFFICCCTGCGTSCFKKCGGCCDDYTGHQEFVIK 1344
Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 107/427 (25%), Positives = 178/427 (42%), Gaps = 62/427 (15%)
Query 50 DTLYLTQDLFLPFYSNVTGFHTINHT-----------FGNPVI-PFKDGIYFAATEKSNV 97
D +YL L L Y ++G N F P + PF DGI FA + S
Sbjct 54 DRVYLNTTLLLNGYYPISGATFRNMALKGTRLLSTLWFKPPFLSPFNDGI-FAKVKNSRF 112
Query 98 VRGWVF---------GSTMNNKSQSVII------INNSTN--VVIRACNFELCDNPFFAV 140
+ V GST N S S+++ IN + + I C + +C+ P
Sbjct 113 SKDGVIYSEFPAITIGSTFVNTSYSIVVEPHTSLINGNLQGLLQISVCQYTMCEYPHTIC 172
Query 141 SKPMGTQTHTMI-FD-NAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYK 198
+G Q + +D + +C + F+ DV N +L F F + G Y Y
Sbjct 173 HPNLGNQRIELWHYDTDVVSCLYR---RNFTYDV-----NADYLY-FHFYQEGGTFYAYF 223
Query 199 GYQPIDVVRDLPSGFNTLKPIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLK 258
+GF T K +FKL LG ++++ + + A + Y+V L
Sbjct 224 ----------TDTGFVT-KFLFKLYLGTVLSHYYVMPLTCNSALSL------EYWVTPLT 266
Query 259 PTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVR-FP 317
F+L +D++G + AVDC+ + ++E+ C S G+Y+ + + V P V R P
Sbjct 267 TRQFLLAFDQDGVLYHAVDCASDFMSEIMCKTSSITPPTGVYELNGYTVQPVATVYRRIP 326
Query 318 NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDL 377
++ N C N+ S WERK SNC + L + +F C + A++L +
Sbjct 327 DLPN-CDIEAWLNSKTVSSPLNWERKIFSNCNFNMGRLMSFIQADSFGCNNIDASRLYGM 385
Query 378 CFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWN--TRNIDATSTGN 435
CF ++ D F + + G++G + +NYK+ C L ++ N+ T
Sbjct 386 CFGSITIDKFAIPNSRKVDLQVGKSGYLQSFNYKIDTAVSSCQLYYSLPAANVSVTHYNP 445
Query 436 YNYKYRY 442
++ RY
Sbjct 446 SSWNRRY 452
>sp|Q9IKD1|SPIKE_CVRSD Spike glycoprotein OS=Rat coronavirus (strain
681) OX=33740 GN=S PE=3 SV=1
Length=1360
Score = 447 bits (1150), Expect = 3e-134, Method: Compositional matrix adjust.
Identities = 282/764 (37%), Positives = 413/764 (54%), Gaps = 47/764 (6%)
Query 516 STDLIKNQCVNFNFNGLTGTGVLTP-SSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDIS 574
+T+++ CV ++ G TG GV + + +Q DV+ + RD T++ +
Sbjct 611 NTEVVTGVCVKYDLYGSTGQGVFKEVKADYYNSWQNLLYDVNGNLNGFRDIVTNKTYLLR 670
Query 575 PCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAG 634
C G VS + E A+LY+++ C V + + TP N F + G
Sbjct 671 SCYSGRVSAAY--HQDAPEPALLYRNLKCDYVFNNNISREETPL--------NYFDSYLG 720
Query 635 CLIGAEH-VDTSYE-CDIPIGAGICASYHTVSLLR---STSQK--SIVAYTMSLGADSSI 687
C+I A++ + S + CD+ +G+G+C +Y R ST K + +T+S+ DS
Sbjct 721 CVINADNSTEQSVDACDLRMGSGLCVNYSIAHRARRSVSTGYKLTTFEPFTVSIVNDSVE 780
Query 688 AYSN-NTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLN 746
+ + IPTNF+I+ E + K ++DC ++CGD T C L+ YGSFC +N
Sbjct 781 SVGGLYEMQIPTNFTIASHQEFIQTRSPKVTIDCAAFVCGDYTACRQQLVDYGSFCDNIN 840
Query 747 RALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFG------GFNFSQIL----PDPLKPTK 796
L + D +V + + Q + G NFS +L D + TK
Sbjct 841 AILGEVNNLIDTMQLQVASALIQGVTLSSRLADGISGQIDDINFSPLLGCLGSDCSEGTK 900
Query 797 ----RSFIEDLLFNKVTLADAGFMKQYGECLGDINARDLICAQKFNGLTVLPPLLTDDMI 852
RS IED+LF+KV L+D GF++ Y C G RDL+C Q FNG+ VLPP+L++ I
Sbjct 901 AAQGRSAIEDVLFDKVKLSDVGFVESYNNCTGGQEVRDLLCVQSFNGIKVLPPVLSESQI 960
Query 853 AAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKA 912
+ YTA + W+ AG +PFA+ + YR NG+GVT NVL ENQK IA+ FN A
Sbjct 961 SGYTAGATASAMFPPWSAAAG----VPFALSVQYRINGLGVTMNVLSENQKMIASSFNNA 1016
Query 913 ISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAE 972
I IQE T++AL K+Q VVN NA+ALN L+ QLS+ FGAIS+ L +ILSRLD +EA+
Sbjct 1017 IGAIQEGFDATNSALAKIQSVVNANAEALNNLLNQLSNRFGAISASLQEILSRLDALEAQ 1076
Query 973 VQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLM 1032
QIDRLI GRL +L YV++QL I+ SA A K++ECV QS R++FCG G H++
Sbjct 1077 AQIDRLINGRLTALNAYVSKQLSDMTLIKVSAAQAIEKVNECVKSQSPRINFCGNGNHIL 1136
Query 1033 SFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEG-KAYFPREGVFVFNGTSWFITQRNF 1091
S Q AP+G+ F+H +YVP+ +P +C G + P+ G FV + W T N+
Sbjct 1137 SLVQNAPYGLYFIHFSYVPTSFTTVNVSPGLCISGDRGLAPKAGYFVQDHGEWKFTGSNY 1196
Query 1092 FSPQIITTDNTFVSGNCDVVIGIINNTVYDPLQPELDSFKEELDKYFKNHTS--PDVDLG 1149
+ P+ IT N+ V +C V + L FKEELDK+FKN TS PD+
Sbjct 1197 YYPESITDKNSVVMSSCAVNYTKAPEVFLNTSITNLPDFKEELDKWFKNQTSIVPDLSF- 1255
Query 1150 DISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAI 1209
DI +N + +++ E++R+ + KNLNES I+L+E+G YE Y+KWPWYVWL + GL +
Sbjct 1256 DIGKLNVTFLDLSYEMNRIQDAIKNLNESYINLKEIGTYEMYVKWPWYVWL--LIGLAGV 1313
Query 1210 VMVTILLCCMTSCCSCLKGACSCGSCCKFDEDDSEPVLKGVKLH 1253
+ +L CG+CC D+ G+ +H
Sbjct 1314 AVCVLLFFICCCTGCGSCCFKKCGNCC----DEYGGRQAGIVIH 1353
Score = 106 bits (265), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 123/522 (24%), Positives = 207/522 (40%), Gaps = 71/522 (14%)
Query 1 MFIFLLFLTLTSGSDLD-RC-----TTFDDVQAPNYTQHT---SSMRGVYYP-DEIFRSD 50
+F+FL L G D RC T + +AP+ + S G YY D ++ +
Sbjct 2 LFVFLTLLPSCLGYIGDFRCINLVNTRISNARAPSVSTEVVDVSKGLGTYYVLDRVYLNA 61
Query 51 TLYLTQDLFLP----FYSNVT--GFHTINHTFGNP--VIPFKDGIYFAATE-KSNVVRG- 100
TL LT + P Y N+ G +T++ + P + F DGIY K+++ G
Sbjct 62 TLLLTG--YYPVDGSMYRNMALMGTNTLSLNWFEPPFLSEFNDGIYAKVKNLKASLPIGS 119
Query 101 ------WVFGSTMNNKSQSVIIINNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFD 154
+ GS N S +V++ + ++ C + +C P G T +
Sbjct 120 ASYFPTIIIGSNFVNTSYTVVLEPYNGIIMASICQYTICQLPHTDCKPNTGGNTLIGFWH 179
Query 155 NAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFN 214
+ F+ +V+ + F F + G Y Y D+ S
Sbjct 180 TDLRPPVCILKRNFTFNVNAE------WLYFHFYQQGGTFYAYYA--------DVSSATT 225
Query 215 TLKPIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITD 274
L F +G +T + + SP G S+ Y+V L ++ +++ G IT
Sbjct 226 FL---FSSYIGAVLTQYFVLPYMCSPTTS--GVSSPQYWVTPLVKRQYLFNFNQKGIITS 280
Query 275 AVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNL--CPFGEVFNAT 332
AVDC+ + +E+KC +S + G+Y S + V P G V R + NL C E A
Sbjct 281 AVDCASSYTSEIKCKTQSMNPNTGVYDLSGYTVQPVGLVYR--RVRNLPDCKIEEWLAAN 338
Query 333 KFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGD 392
PS WERK NC + S L + C + A+K+ +CF ++ D F +
Sbjct 339 TVPSPLNWERKTFQNCNFNLSSLLRFVQAESLSCSNIDASKVYGMCFGSISIDKFAIPNS 398
Query 393 DVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDAT----STGNYNYKYRYLRHGKL 448
+ G++G++ +NYK+ C L ++ + T + ++N +Y +
Sbjct 399 RRVDLQLGKSGLLQSFNYKIDTRATSCQLYYSLAQDNVTVINHNPSSWNRRYGFNDVATF 458
Query 449 RPFERDIS--------NVPFSPDGKPCT--------PPALNC 474
E D++ + P KP T P + NC
Sbjct 459 HSGEHDVAYAEACFTVGASYCPCAKPSTVYSCVTGKPKSANC 500
>sp|Q02385|SPIKE_CVMJC Spike glycoprotein OS=Murine coronavirus
(strain JHMV / variant CL-2) OX=33735 GN=S PE=1 SV=1
Length=1376
Score = 446 bits (1148), Expect = 8e-134, Method: Compositional matrix adjust.
Identities = 279/768 (36%), Positives = 410/768 (53%), Gaps = 51/768 (7%)
Query 503 LLNA--PATVCGPKL---STDLIKNQCVNFNFNGLTGTGVLTP-SSKRFQPFQQFGRDVS 556
LLN T C L +T++ CV ++ G+TG GV + + +Q DV+
Sbjct 606 LLNGINSGTTCSTDLQLPNTEVATGVCVRYDLYGITGQGVFKEVKADYYNSWQALLYDVN 665
Query 557 DFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLT 616
+ RD T++ I C G VS + E A+LY+++NC+ V T + +
Sbjct 666 GNLNGFRDLTTNKTYTIRSCYSGRVSAAY--HKEAPEPALLYRNINCSYVFTNNISREEN 723
Query 617 PAWRIYSTGNNVFQTQAGCLIGAEHV--DTSYECDIPIGAGICASYHTVSLLRSTSQKSI 674
P N F + GC++ A++ + CD+ +GAG+C Y R +
Sbjct 724 PL--------NYFDSYLGCVVNADNRPDEALPNCDLRMGAGLCVDYSKSRRARRSVSTGY 775
Query 675 VAYT----MSLGADSSIAYSNN--TIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDS 728
T M + + S+ + IPTNF+I E + + K ++DC ++CGD+
Sbjct 776 RLTTFEPYMPMLVNDSVQSVGGLYEMQIPTNFTIGHHEEFIQIRAPKVTIDCAAFVCGDN 835
Query 729 TECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFG------GF 782
C L++YGSFC +N L+ + D +V + + Q + G
Sbjct 836 AACRQQLVEYGSFCDNVNAILNEVNNLLDNMQLQVASALMQGVTISSRLPDGISGPIDDI 895
Query 783 NFSQILP-----------DPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARDL 831
NFS +L P RS IEDLLF+KV L+D GF++ Y C G RDL
Sbjct 896 NFSPLLGCIGSTCAEDGNGPSAMRGRSAIEDLLFDKVKLSDVGFVEAYNNCTGGQEVRDL 955
Query 832 ICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGI 891
+C Q FNG+ VLPP+L++ I+ YTA + WT AG +PF++ + YR NG+
Sbjct 956 LCVQSFNGIKVLPPVLSESQISGYTAGATAAAMFPPWTAAAG----VPFSLNVQYRINGL 1011
Query 892 GVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSN 951
GVT NVL ENQK IA+ FN A+ IQE T++ALGK+Q VVN NA+ALN L+ QLS+
Sbjct 1012 GVTMNVLSENQKMIASAFNNALGAIQEGFDATNSALGKIQSVVNANAEALNNLLNQLSNR 1071
Query 952 FGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKM 1011
FGAIS+ L +IL+RLD+VEA+ QIDRLI GRL +L Y+++QL + I+ SA A K+
Sbjct 1072 FGAISASLQEILTRLDRVEAKAQIDRLINGRLTALNAYISKQLSDSTLIKFSAAQAIEKV 1131
Query 1012 SECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEG-KAY 1070
+ECV Q+ R++FCG G H++S Q AP+G+ F+H +YVP+ + +P +C G +
Sbjct 1132 NECVKSQTTRINFCGNGNHILSLVQNAPYGLCFIHFSYVPTSFKTANVSPGLCISGDRGL 1191
Query 1071 FPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPLQPELDSF 1130
P+ G FV + W T N++ P+ IT N+ V +C V + P L F
Sbjct 1192 APKAGYFVQDNGEWKFTGSNYYYPEPITDKNSVVMISCAVNYTKAPEVFLNNSIPNLPDF 1251
Query 1131 KEELDKYFKNHTS--PDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKY 1188
KEELDK+FKN TS PD+ L D +N + +++ E++R+ + K LNES I+L+E+G Y
Sbjct 1252 KEELDKWFKNQTSIAPDLSL-DFEKLNVTFLDLTYEMNRIQDAIKKLNESYINLKEVGTY 1310
Query 1189 EQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCC 1236
E Y+KWPWYVWL + GL + + +L CGSCC
Sbjct 1311 EMYVKWPWYVWL--LIGLAGVAVCVLLFFICCCTGCGSCCFRKCGSCC 1356
Score = 107 bits (266), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 129/509 (25%), Positives = 206/509 (40%), Gaps = 65/509 (13%)
Query 1 MFIFLLFLTLTSGSDLD-RCT-----TFDDVQAPNYTQHT---SSMRGVYYP-DEIFRSD 50
+F+F+LFL G D RC ++ AP+ + S G YY D ++ +
Sbjct 2 LFVFILFLPSCLGYIGDFRCIQTVNYNGNNASAPSISTEAVDVSKGLGTYYVLDRVYLNA 61
Query 51 TLYLTQDLFLPF----YSNV--TGFHTINHTFGNP--VIPFKDGIYFAATE--KSNVVRG 100
TL LT + P Y N+ TG +T++ T+ P + F DGI FA + K+N G
Sbjct 62 TLLLTG--YYPVDGSNYRNLALTGTNTLSLTWFKPPFLSEFNDGI-FAKVQNLKTNTPTG 118
Query 101 W-------VFGSTMNNKSQSVIIINNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIF 153
V GS N S +V++ + ++ C + +C P+ KP + F
Sbjct 119 ATSYFPTIVIGSLFGNTSYTVVLEPYNNIIMASVCTYTICQLPY-TPCKPNTNGNRVIGF 177
Query 154 DNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVY---KGYQPIDVVRDLP 210
+ DV K R F F +LY + +G D P
Sbjct 178 --------------WHTDVKPPICLLK--RNFTFNVNAPWLYFHFYQQGGTFYAYYADKP 221
Query 211 SGFNTLKPIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENG 270
S L F + +G +T + + +P T Y+V L ++ ++E G
Sbjct 222 SATTFL---FSVYIGDILTQYFVLPFICTPTAG--STLLPLYWVTPLLKRQYLFNFNEKG 276
Query 271 TITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVR-FPNITNLCPFGEVF 329
IT AVDC+ + ++E+KC +S G+Y S + V P G V R PN+ + C E
Sbjct 277 VITSAVDCASSYISEIKCKTQSLLPSTGVYDLSGYTVQPVGVVYRRVPNLPD-CKIEEWL 335
Query 330 NATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVV 389
A PS WER+ NC + S L + C + A+K+ +CF +V D F +
Sbjct 336 TAKSVPSPLNWERRTFQNCNFNLSSLLRYVQAESLSCNNIDASKVYGMCFGSVSVDKFAI 395
Query 390 KGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAW----NTRNIDATSTGNYNYKYRYLRH 445
+ G +G + NYK+ C L + N I+ + ++N +Y +
Sbjct 396 PRSRQIDLQIGNSGFLQTANYKIDTAATSCQLYYSLPKNNVTINNYNPSSWNRRYGFNDA 455
Query 446 GKLRPFERDISNVP----FSPDGKPCTPP 470
G + D++ P PC P
Sbjct 456 GVFGKSKHDVAYAQQCFIVRPSYCPCAQP 484
>sp|P22432|SPIKE_CVM4 Spike glycoprotein OS=Murine coronavirus
(strain 4) OX=12760 GN=S PE=3 SV=1
Length=1376
Score = 446 bits (1146), Expect = 2e-133, Method: Compositional matrix adjust.
Identities = 282/794 (36%), Positives = 418/794 (53%), Gaps = 52/794 (7%)
Query 495 RVVVLSFELLNA--PATVCGPKL---STDLIKNQCVNFNFNGLTGTGVLTP-SSKRFQPF 548
R + + LLN T C L +T++ CV ++ G+TG GV + + +
Sbjct 598 RCQIFANILLNGINSGTTCSTDLQLPNTEVATGVCVRYDLYGITGQGVFKEVKADYYNSW 657
Query 549 QQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVST 608
Q DV+ + RD T++ I C G VS + E A+LY+++NC+ V T
Sbjct 658 QALLYDVNGNLNGFRDLTTNKTYTIRSCYSGRVSAAY--HKEAPEPALLYRNINCSYVFT 715
Query 609 AIHADQLTPAWRIYSTGNNVFQTQAGCLIGAEHV--DTSYECDIPIGAGICASYHTVSLL 666
+ + P N F + GC++ A++ + CD+ +GAG+C Y
Sbjct 716 NNISREENPL--------NYFDSYLGCVVNADNRTDEALPNCDLRMGAGLCVDYSKSRRA 767
Query 667 RSTSQKSIVAYT----MSLGADSSIAYSNN--TIAIPTNFSISITTEVMPVSMAKTSVDC 720
R + T M + + S+ + IPTNF+I E + + K ++DC
Sbjct 768 RRSVSTGYRLTTFEPYMPMLVNDSVQSVGGLYEMQIPTNFTIGHHEEFIQIRAPKVTIDC 827
Query 721 NMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFG 780
++CGD+ C L++YGSFC +N L+ + D +V + + Q + G
Sbjct 828 AAFVCGDNAACRQQLVEYGSFCDNVNAILNEVNNLLDNMQLQVASALMQGVTISSRLPDG 887
Query 781 ------GFNFSQILP-----------DPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECL 823
NFS +L P RS IEDLLF+KV L+D GF++ Y C
Sbjct 888 ISGPIDDINFSPLLGCIGSTCAEDGNGPSAIRGRSAIEDLLFDKVKLSDVGFVEAYNNCT 947
Query 824 GDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQ 883
G RDL+C Q FNG+ VLPP+L++ I+ YTA + WT AG +PF++
Sbjct 948 GGQEVRDLLCVQSFNGIKVLPPVLSESQISGYTAGATAAAMFPPWTAAAG----VPFSLN 1003
Query 884 MAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNT 943
+ YR NG+GVT NVL ENQK IA+ FN A+ IQE T++ALGK+Q VVN NA+ALN
Sbjct 1004 VQYRINGLGVTMNVLSENQKMIASAFNNALGAIQEGFDATNSALGKIQSVVNANAEALNN 1063
Query 944 LVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRAS 1003
L+ QLS+ FGAIS+ L +IL+RLD VEA+ QIDRLI GRL +L Y+++QL + I+ S
Sbjct 1064 LLNQLSNRFGAISASLQEILTRLDAVEAKAQIDRLINGRLTALNAYISKQLSDSTLIKFS 1123
Query 1004 ANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAI 1063
A A K++ECV Q+ R++FCG G H++S Q AP+G+ F+H +YVP+ + +P +
Sbjct 1124 AAQAIEKVNECVKSQTTRINFCGNGNHILSLVQNAPYGLCFIHFSYVPTSFKTANVSPGL 1183
Query 1064 CHEG-KAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDP 1122
C G + P+ G FV + W T N++ P+ IT N+ V +C V +
Sbjct 1184 CISGDRGLAPKAGYFVQDNGEWKFTGSNYYYPEPITDKNSVVMISCAVNYTKAPEVFLNN 1243
Query 1123 LQPELDSFKEELDKYFKNHTS--PDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLI 1180
P L FKEELDK+FKN TS PD+ L D +N + +++ E++R+ + K LNES I
Sbjct 1244 SIPNLPDFKEELDKWFKNQTSIAPDLSL-DFEKLNVTFLDLTYEMNRIQDAIKKLNESYI 1302
Query 1181 DLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCC-KFD 1239
+L+E+G YE Y+KWPWYVWL + GL + + +L CGSCC ++
Sbjct 1303 NLKEVGTYEMYVKWPWYVWL--LIGLAGVAVCVLLFFICCCTGCGSCCFRKCGSCCDEYG 1360
Query 1240 EDDSEPVLKGVKLH 1253
V+ + H
Sbjct 1361 GHQDSIVIHNISAH 1374
Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 128/509 (25%), Positives = 205/509 (40%), Gaps = 65/509 (13%)
Query 1 MFIFLLFLTLTSGSDLD-RCT-----TFDDVQAPNYTQHT---SSMRGVYYP-DEIFRSD 50
+F+F+L L G D RC ++ AP+ + S G YY D ++ +
Sbjct 2 LFVFILLLPSCLGYIGDFRCIQTVNYNGNNASAPSISTEAVDVSKGLGTYYVLDRVYLNA 61
Query 51 TLYLTQDLFLPF----YSNV--TGFHTINHTFGNP--VIPFKDGIYFAATE--KSNVVRG 100
TL LT + P Y N+ TG +T++ T+ P + F DGI FA + K+N G
Sbjct 62 TLLLTG--YYPVDGSNYRNLALTGTNTLSLTWFKPPFLSEFNDGI-FAKVQNLKTNTPTG 118
Query 101 W-------VFGSTMNNKSQSVIIINNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIF 153
V GS N S +V++ + ++ C + +C P+ KP + F
Sbjct 119 ATSYFPTIVIGSLFGNTSYTVVLEPYNNIIMASVCTYTICQLPY-TPCKPNTNGNRVIGF 177
Query 154 DNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVY---KGYQPIDVVRDLP 210
+ DV K R F F +LY + +G D P
Sbjct 178 --------------WHTDVKPPICLLK--RNFTFNVNAPWLYFHFYQQGGTFYAYYADKP 221
Query 211 SGFNTLKPIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENG 270
S L F + +G +T + + +P T Y+V L ++ ++E G
Sbjct 222 SATTFL---FSVYIGDILTQYFVLPFICTPTAG--STLLPLYWVTPLLKRQYLFNFNEKG 276
Query 271 TITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVR-FPNITNLCPFGEVF 329
IT AVDC+ + ++E+KC +S G+Y S + V P G V R PN+ + C E
Sbjct 277 VITSAVDCASSYISEIKCKTQSLLPSTGVYDLSGYTVQPVGVVYRRVPNLPD-CKIEEWL 335
Query 330 NATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVV 389
A PS WER+ NC + S L + C + A+K+ +CF +V D F +
Sbjct 336 TAKSVPSPLNWERRTFQNCNFNLSSLLRYVQAESLSCNNIDASKVYGMCFGSVSVDKFAI 395
Query 390 KGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAW----NTRNIDATSTGNYNYKYRYLRH 445
+ G +G + NYK+ C L + N I+ + ++N +Y +
Sbjct 396 PRSRQIDLQIGNSGFLQTANYKIDTAATSCQLYYSLPKNNVTINNYNPSSWNRRYGFNDA 455
Query 446 GKLRPFERDISNVP----FSPDGKPCTPP 470
G + D++ P PC P
Sbjct 456 GVFGKSKHDVAYAQQCFTVRPSYCPCAQP 484
>sp|Q8JSP8|SPIKE_CVPIA Spike glycoprotein OS=Porcine hemagglutinating
encephalomyelitis virus (strain IAF-404) OX=230236 GN=S
PE=3 SV=1
Length=1349
Score = 445 bits (1144), Expect = 2e-133, Method: Compositional matrix adjust.
Identities = 275/760 (36%), Positives = 404/760 (53%), Gaps = 50/760 (7%)
Query 508 ATVCGPKL---STDLIKNQCVNFNFNGLTGTGVLTP-SSKRFQPFQQFGRDVSDFTDSVR 563
T C L +T++ + CVN++ G+TG G+L ++ + +Q D S R
Sbjct 598 GTTCSTDLQQGNTNITTDVCVNYDLYGITGQGILIEVNATYYNSWQNLLYDSSGNLYGFR 657
Query 564 DPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDV--STAIHADQLTPAWRI 621
D ++ I C G VS + SSE A++++++ C+ V T + QL
Sbjct 658 DYLSNRTFLIRSCYSGRVSAVFHAN--SSEPALMFRNLKCSHVFNYTILRQIQLV----- 710
Query 622 YSTGNNVFQTQAGCLIGAEHVDTSY--ECDIPIGAGICASYHTVSLLRSTSQ-------K 672
N F + GC++ A + S CD+ +G+G C Y V+ LRS
Sbjct 711 -----NYFDSYLGCVVNAYNNTASAVSTCDLTVGSGYCVDY--VTALRSRRSFTTGYRFT 763
Query 673 SIVAYTMSLGADSSIAYSN-NTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTEC 731
+ + +L DS I IP+ F+I E + S K ++DC ++CGD C
Sbjct 764 NFEPFAANLVNDSIEPVGGLYEIQIPSEFTIGNLEEFIQTSSPKVTIDCATFVCGDYAAC 823
Query 732 ANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFG------GFNFS 785
L +YGSFC +N L + D +V + T G NFS
Sbjct 824 RQQLAEYGSFCENINAILIEVNELLDTTQLQVANSLMNGVTLSTKIKDGINFNVDDINFS 883
Query 786 QIL----PDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARDLICAQKFNGLT 841
+L + + + RS IEDLLF+KV L+D GF++ Y C G RDLIC Q +NG+
Sbjct 884 SVLGCLGSECNRASTRSAIEDLLFDKVKLSDVGFVQAYNNCTGGAEIRDLICVQSYNGIK 943
Query 842 VLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYEN 901
VLPPLL+++ I+ YT+A + + WT AG +PF + + YR NG+GVT +VL +N
Sbjct 944 VLPPLLSENQISGYTSAATAASLFPPWTAAAG----VPFYLNVQYRINGLGVTMDVLSQN 999
Query 902 QKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLND 961
QK IA+ FN A+ IQE T++AL K+Q VVN NA+ALN L++QLS+ FGAIS+ L +
Sbjct 1000 QKLIASAFNNALDSIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISASLQE 1059
Query 962 ILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKR 1021
ILSRLD +EA+ QIDRLI GRL +L YV+QQL + ++ SA A K++ECV QS R
Sbjct 1060 ILSRLDALEAKAQIDRLINGRLTALNAYVSQQLSDSTLVKFSAAQAIEKVNECVKSQSSR 1119
Query 1022 VDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGK-AYFPREGVFVFN 1080
++FCG G H++S Q AP+G+ F+H +YVP++ +P +C G P+ G F+
Sbjct 1120 INFCGNGNHIISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGDIGISPKSGYFINV 1179
Query 1081 GTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPLQPELDSFKEELDKYFKN 1140
SW T ++ P+ IT +N V C V + + + P L FKEEL ++FKN
Sbjct 1180 NNSWMFTGSGYYYPEPITQNNVVVMSTCAVNYTKAPDLMLNTSTPNLPDFKEELYQWFKN 1239
Query 1141 HTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWL 1200
+S DL IN + +++Q E++RL E K LN S I+L+++G YE Y+KWPWYVWL
Sbjct 1240 QSSLAPDL-SFDYINVTFLDLQDEMNRLQEAIKVLNHSYINLKDIGTYEYYVKWPWYVWL 1298
Query 1201 GFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDE 1240
+ L +VM+ +L CG C FD+
Sbjct 1299 --LICLAGVVMLVLLFFICCCTGCGTSCFKKCGGC--FDD 1334
Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 96/383 (25%), Positives = 161/383 (42%), Gaps = 50/383 (13%)
Query 82 PFKDGIYFAATEKSNVVRGWVF---------GSTMNNKSQSVII------INNSTN--VV 124
PF DGI FA + S + V GST N S S+++ IN + +
Sbjct 98 PFNDGI-FAKVKNSRFSKHGVIYSEFPAITIGSTFVNTSYSIVVKPHTSFINGNLQGFLQ 156
Query 125 IRACNFELCDNPFFAVSKPMGTQTHTMIFDN--AFNCTFEYISDAFSLDVSEKSGNFKHL 182
I C + +C+ P +G Q + + +C + F+ DV N +L
Sbjct 157 ISVCQYTMCEYPQTICHPNLGNQRIELWHHDTDVVSCLYR---RNFTYDV-----NADYL 208
Query 183 REFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITNFRAILTAFSPAQ 242
F F + G Y Y +GF T K +FKL LG ++++ + A
Sbjct 209 Y-FHFYQEGGTFYAYF----------TDTGFVT-KFLFKLYLGTVLSHYYVMPLTCDSAL 256
Query 243 DIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQT 302
+ Y+V L F+L +D++G + AVDC+ + ++E+ C S G+Y+
Sbjct 257 SL------EYWVTPLTTRQFLLAFDQDGVLYHAVDCASDFMSEIMCKTSSITPPTGVYEL 310
Query 303 SNFRVVPSGDVVR-FPNITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFF 361
+ + V P V R P++ N C N+ S WERK SNC + L +
Sbjct 311 NGYTVQPVATVYRRIPDLPN-CDIEAWLNSKTVSSPLNWERKIFSNCNFNMGRLMSFIQA 369
Query 362 STFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVL 421
+F C + A++L +CF ++ D F + + G++G + +NYK+ C L
Sbjct 370 DSFGCNNIDASRLYGMCFGSITIDKFAIPNSRKVDLQVGKSGYLQSFNYKIDTAVSSCQL 429
Query 422 AWN--TRNIDATSTGNYNYKYRY 442
++ N+ T ++ RY
Sbjct 430 YYSLPAANVSVTHYNPSSWNRRY 452
>sp|Q5MQD0|SPIKE_CVHN1 Spike glycoprotein OS=Human coronavirus
HKU1 (isolate N1) OX=443239 GN=S PE=1 SV=1
Length=1356
Score = 437 bits (1125), Expect = 1e-130, Method: Compositional matrix adjust.
Identities = 271/776 (35%), Positives = 419/776 (54%), Gaps = 57/776 (7%)
Query 495 RVVVLSFELLNA--PATVCGPKL---STDLIKNQCVNFNFNGLTGTGVLTP-SSKRFQPF 548
R + S +LN T C L +T++ + CV+++ G+TG G+ S+ + +
Sbjct 587 RCNIFSNFILNGINSGTTCSNDLLQPNTEVFTDVCVDYDLYGITGQGIFKEVSAVYYNSW 646
Query 549 QQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVST 608
Q D + +D T++ +I PC G VS NASS +A+LY+++ C+ V
Sbjct 647 QNLLYDSNGNIIGFKDFVTNKTYNIFPCYAGRVSAAF-HQNASS-LALLYRNLKCSYVLN 704
Query 609 AIHADQLTPAWRIYSTGNNVFQTQAGCLIGAEHVDTSYE---CDIPIGAGICASYHTVSL 665
I T F + GC+ A+++ T Y C + +G+G C Y++ S
Sbjct 705 NISL-----------TTQPYFDSYLGCVFNADNL-TDYSVSSCALRMGSGFCVDYNSPSS 752
Query 666 LRSTSQKSIVA--YTMSLGADSSIAYSNNTI---------AIPTNFSISITTEVMPVSMA 714
S ++ ++ Y ++++ N++I IPTNF+I E + +
Sbjct 753 SSSRRKRRSISASYRFVTFEPFNVSFVNDSIESVGGLYEIKIPTNFTIVGQEEFIQTNSP 812
Query 715 KTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQ-MYKT 773
K ++DC++++C + C +LL +YG+FC +N L + D V + Q + +
Sbjct 813 KVTIDCSLFVCSNYAACHDLLSEYGTFCDNINSILDEVNGLLDTTQLHVADTLMQGVTLS 872
Query 774 PTLKYFGGFNFSQI----LPDPLKP----TKRSFIEDLLFNKVTLADAGFMKQYGECLGD 825
L F+ I L L P + RSF EDLLF+KV L+D GF++ Y C G
Sbjct 873 SNLNTNLHFDVDNINFKSLVGCLGPHCGSSSRSFFEDLLFDKVKLSDVGFVEAYNNCTGG 932
Query 826 INARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMA 885
RDL+C Q FNG+ VLPP+L++ I+ YT A W+ AG IPF++ +
Sbjct 933 SEIRDLLCVQSFNGIKVLPPILSESQISGYTTAATVAAMFPPWSAAAG----IPFSLNVQ 988
Query 886 YRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLV 945
YR NG+GVT +VL +NQK IA FN A+ IQ + T++AL K+Q VVN NAQALN+L+
Sbjct 989 YRINGLGVTMDVLNKNQKLIATAFNNALLSIQNGFSATNSALAKIQSVVNSNAQALNSLL 1048
Query 946 KQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASAN 1005
+QL + FGAISS L +ILSRLD +EA+VQIDRLI GRL +L YV+QQL + ++ A
Sbjct 1049 QQLFNKFGAISSSLQEILSRLDALEAQVQIDRLINGRLTALNAYVSQQLSDISLVKFGAA 1108
Query 1006 LAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICH 1065
LA K++ECV QS R++FCG G H++S Q AP+G++F+H +Y P + +P +C
Sbjct 1109 LAMEKVNECVKSQSPRINFCGNGNHILSLVQNAPYGLLFMHFSYKPISFKTVLVSPGLCI 1168
Query 1066 EGKAYF-PREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPLQ 1124
G P++G F+ + W T +++ P+ I+ N C V +
Sbjct 1169 SGDVGIAPKQGYFIKHNDHWMFTGSSYYYPEPISDKNVVFMNTCSVNFTKAPLVYLNHSV 1228
Query 1125 PELDSFKEELDKYFKNHTS--PDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDL 1182
P+L F+ EL +FKN TS P++ L ++ INA+ +++ E++ + E K+LN S I+L
Sbjct 1229 PKLSDFESELSHWFKNQTSIAPNLTL-NLHTINATFLDLYYEMNLIQESIKSLNNSYINL 1287
Query 1183 QELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGAC--SCGSCC 1236
+++G YE Y+KWPWYVWL I +++ +CC T C S AC C +CC
Sbjct 1288 KDIGTYEMYVKWPWYVWLLISFSFIIFLVLLFFICCCTGCGS----ACFSKCHNCC 1339
Score = 106 bits (265), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 89/347 (26%), Positives = 146/347 (42%), Gaps = 24/347 (7%)
Query 102 VFGSTMNNKSQSVIIINNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFN-CT 160
V GS N S ++++ ++ + I AC + +C+ P ++ + FD + C
Sbjct 125 VIGSVFINNSYTIVVQPHNGVLEITACQYTMCEYPHTICKSKGSSRNESWHFDKSEPLCL 184
Query 161 FEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIF 220
F+ F+ +VS F F + G Y Y +P+ F +F
Sbjct 185 FK---KNFTYNVSTD------WLYFHFYQERGTFYAYYA------DSGMPTTF-----LF 224
Query 221 KLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQ 280
L LG ++++ + + Y+V L ++LK+D G IT+AVDCS
Sbjct 225 SLYLGTLLSHYYVLPLTCNAISSNTDNETLQYWVTPLSKRQYLLKFDNRGVITNAVDCSS 284
Query 281 NPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDV-VRFPNITNLCPFGEVFNATKFPSVYA 339
+ +E++C KS + G+Y S F V P V R P++ + C + N PS
Sbjct 285 SFFSEIQCKTKSLLPNTGVYDLSGFTVKPVATVHRRIPDLPD-CDIDKWLNNFNVPSPLN 343
Query 340 WERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAP 399
WERK SNC + S L +F C +K+ CF ++ D F + +
Sbjct 344 WERKIFSNCNFNLSTLLRLVHTDSFSCNNFDESKIYGSCFKSIVLDKFAIPNSRRSDLQL 403
Query 400 GQTGVIADYNYKLPDDFMGCVLAWNTRNIDATSTGNYNYKYRYLRHG 446
G +G + NYK+ C L ++ I+ T NYN R+G
Sbjct 404 GSSGFLQSSNYKIDTTSSSCQLYYSLPAINVT-INNYNPSSWNRRYG 449
>sp|P15423|SPIKE_CVH22 Spike glycoprotein OS=Human coronavirus
229E OX=11137 GN=S PE=1 SV=1
Length=1173
Score = 353 bits (906), Expect = 1e-101, Method: Compositional matrix adjust.
Identities = 213/612 (35%), Positives = 317/612 (52%), Gaps = 54/612 (9%)
Query 684 DSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCT 743
DS A ++IP+N++ S+ E + ++ VDC+ Y+C + C LL QY S C
Sbjct 572 DSVSAIVTANLSIPSNWTTSVQVEYLQITSTPIVVDCSTYVCNGNVRCVELLKQYTSACK 631
Query 744 QLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPD-PLKPTK---RSF 799
+ AL A + + E+ K+ + + FG +N S ++P P ++ RS
Sbjct 632 TIEDALRNSARLESADVSEMLTFDKKAFTLANVSSFGDYNLSSVIPSLPTSGSRVAGRSA 691
Query 800 IEDLLFNKVTLADAGFM-KQYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAA 858
IED+LF+K+ + G + Y +C ++ DL CAQ +NG+ VLP + + +A YT +
Sbjct 692 IEDILFSKLVTSGLGTVDADYKKCTKGLSIADLACAQYYNGIMVLPGVADAERMAMYTGS 751
Query 859 LVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKA------ 912
L+ G A G T +A+ IPF++ + R N + + +VL ENQK +A FNKA
Sbjct 752 LIGGIALGGLT----SAVSIPFSLAIQARLNYVALQTDVLQENQKILAASFNKAMTNIVD 807
Query 913 --------ISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILS 964
I+Q ++L T +TAL K+QDVVNQ +LN L QL NF AISS + I
Sbjct 808 AFTGVNDAITQTSQALQTVATALNKIQDVVNQQGNSLNHLTSQLRQNFQAISSSIQAIYD 867
Query 965 RLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDF 1024
RLD ++A+ Q+DRLITGRL +L +V+ L + E+RAS LA K++ECV QSKR F
Sbjct 868 RLDTIQADQQVDRLITGRLAALNVFVSHTLTKYTEVRASRQLAQQKVNECVKSQSKRYGF 927
Query 1025 CGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEG-KAYFPREGVFVF--NG 1081
CG G H+ S AAP G+VFLH +P+Q ++ +C +G Y R+ G
Sbjct 928 CGNGTHIFSIVNAAPEGLVFLHTVLLPTQYKDVEAWSGLCVDGTNGYVLRQPNLALYKEG 987
Query 1082 TSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPLQPE---LDSFKEELDKYF 1138
+ IT R F P+I T + NC+V I+ + + PE ++ +EL
Sbjct 988 NYYRITSRIMFEPRIPTMADFVQIENCNVTFVNISRSELQTIVPEYIDVNKTLQELSYKL 1047
Query 1139 KNHTSPDVDLGDISGINASVVNIQKEI--------------DRLNEVAKNLNESLIDLQE 1184
N+T PD+ + N +++N+ EI +L + N+N +L+DL+
Sbjct 1048 PNYTVPDL---VVEQYNQTILNLTSEISTLENKSAELNYTVQKLQTLIDNINSTLVDLKW 1104
Query 1185 LGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCC---SCLKGACSCGSCCKFDED 1241
L + E YIKWPW+VWL LI +V + +L CC T CC SC A S CC E
Sbjct 1105 LNRVETYIKWPWWVWLCISVVLIFVVSMLLLCCCSTGCCGFFSCF--ASSIRGCC---ES 1159
Query 1242 DSEPVLKGVKLH 1253
P K+H
Sbjct 1160 TKLPYYDVEKIH 1171
>sp|P12650|SPIKE_IBVK Spike glycoprotein OS=Avian infectious bronchitis
virus (strain KB8523) OX=11126 GN=S PE=3 SV=1
Length=1162
Score = 352 bits (904), Expect = 2e-101, Method: Compositional matrix adjust.
Identities = 202/536 (38%), Positives = 297/536 (55%), Gaps = 26/536 (5%)
Query 694 IAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIA 753
+ IP +F++++T E + M K ++C YICG+S EC NL QYG C + ++ +
Sbjct 584 VLIPNSFNLTVTDEYIQTRMDKVQINCLQYICGNSLECRNLFQQYGPVCDNMLSVVNSVG 643
Query 754 AEQDRNTREVFAQVKQM-YKTPTLKYF--GGFNFSQILPDPLKPTKRSFIEDLLFNKVTL 810
++D ++ K + TP L G FN S L P P +RSFIEDLLF V
Sbjct 644 QKEDMELLNFYSSTKPAGFNTPVLSNVSTGEFNISLFLTTPSSPRRRSFIEDLLFTSVES 703
Query 811 ADAGFMKQYGEC----LGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATA 866
Y C LG + +DL+CA+++NGL VLPP++T +M YT++LV+ A
Sbjct 704 VGLPTDDAYKNCTAGPLGFL--KDLVCAREYNGLLVLPPIITAEMQTLYTSSLVASMAFG 761
Query 867 GWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTA 926
G T AA IPFA Q+ R N +G+TQ++L +NQ++IA FNKAI +QE +TS A
Sbjct 762 GIT----AAGAIPFATQLQARINHLGITQSLLLKNQEKIAASFNKAIGHMQEGFRSTSLA 817
Query 927 LGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSL 986
L ++QDVVN+ + L + L+ NFGAISSV+ +I +LD ++A Q+DRLITGRL SL
Sbjct 818 LQQIQDVVNKQSAILTETMASLNKNFGAISSVIQEIYLQLDAIQANAQVDRLITGRLSSL 877
Query 987 QTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLH 1046
+ + + LA K++ECV QS R FCG G H+++ PQ AP+G+VF+H
Sbjct 878 SVLASAKQAEYIRVSQQRELATQKINECVKSQSTRYSFCGNGRHVLTIPQNAPNGIVFIH 937
Query 1047 VTYVPSQERNFTTAPAICHEGK-----AYFP--REGVFVFNGTSWFITQRNFFSPQIITT 1099
TY P N T C + A P G+F+ S++IT R+ + P+ IT
Sbjct 938 FTYTPESFVNVTAIVGFCVKPNNASQYAIVPVNGRGIFIQVNDSYYITARDMYMPRHITA 997
Query 1100 DNTFVSGNCDVVIGIINNTVYDP-LQPELDSFKEELDKYF--KNHTSPDVDLGDISGINA 1156
+ +C +N TV ++ + F +EL K++ + PD D + +
Sbjct 998 GDIVTLTSCQANYVSVNKTVITTFVENDDFDFDDELSKWWIETKYELPDFDQFNYT---I 1054
Query 1157 SVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMV 1212
V+NI +ID++ EV K LN+SLIDL+ L + YIKWPWYVWL I +++
Sbjct 1055 PVLNITYDIDKIEEVIKGLNDSLIDLETLSILKTYIKWPWYVWLAIAFATIIFILI 1110
>sp|P12651|SPIKE_IBVM Spike glycoprotein OS=Avian infectious bronchitis
virus (strain M41) OX=11127 GN=S PE=3 SV=1
Length=1162
Score = 348 bits (892), Expect = 8e-100, Method: Compositional matrix adjust.
Identities = 198/536 (37%), Positives = 298/536 (56%), Gaps = 26/536 (5%)
Query 694 IAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIA 753
+ IP +F++++T E + M K ++C Y+CG+S +C +L QYG C + ++ I
Sbjct 584 VLIPNSFNLTVTDEYIQTRMDKVQINCLQYVCGNSLDCRDLFQQYGPVCDNILSVVNSIG 643
Query 754 AEQDRNTREVFAQVKQM-YKTPTLKYF--GGFNFSQILPDPLKPTKRSFIEDLLFNKVTL 810
++D ++ K + TP L G FN S +L P P +RSFIEDLLF V
Sbjct 644 QKEDMELLNFYSSTKPAGFNTPFLSNVSTGEFNISLLLTTPSSPRRRSFIEDLLFTSVES 703
Query 811 ADAGFMKQYGEC----LGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATA 866
Y C LG + +DL CA+++NGL VLPP++T +M YT++LV+ A
Sbjct 704 VGLPTDDAYKNCTAGPLGFL--KDLACAREYNGLLVLPPIITAEMQTLYTSSLVASMAFG 761
Query 867 GWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTA 926
G T AA IPFA Q+ R N +G+TQ++L +NQ++IA FNKAI ++QE +TS A
Sbjct 762 GIT----AAGAIPFATQLQARINHLGITQSLLLKNQEKIAASFNKAIGRMQEGFRSTSLA 817
Query 927 LGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSL 986
L ++QDVVN+ + L + L+ NFGAISSV+ +I +LD ++A Q+DRLITGRL SL
Sbjct 818 LQQIQDVVNKQSAILTETMASLNKNFGAISSVIQEIYQQLDAIQANAQVDRLITGRLSSL 877
Query 987 QTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLH 1046
+ + + LA K++ECV QS R FCG G H+++ PQ AP+G+VF+H
Sbjct 878 SVLASAKQAEHIRVSQQRELATQKINECVKSQSIRYSFCGNGRHVLTIPQNAPNGIVFIH 937
Query 1047 VTYVPSQERNFTTAPAICHEGK-----AYFPR--EGVFVFNGTSWFITQRNFFSPQIITT 1099
+Y P N T C + A P G+F+ S++IT R+ + P+ IT
Sbjct 938 FSYTPDSFVNVTAIVGFCVKPANASQYAIVPANGRGIFIQVNGSYYITARDMYMPRAITA 997
Query 1100 DNTFVSGNCDVVIGIINNTVYDP-LQPELDSFKEELDKYFKN--HTSPDVDLGDISGINA 1156
+ +C +N TV + + F +EL K++ + H PD D + +
Sbjct 998 GDIVTLTSCQANYVSVNKTVITTFVDNDDFDFNDELSKWWNDTKHELPDFDKFNYT---V 1054
Query 1157 SVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMV 1212
+++I EIDR+ V + LN+SLIDL++L + YIKWPWYVWL I +++
Sbjct 1055 PILDIDSEIDRIQGVIQGLNDSLIDLEKLSILKTYIKWPWYVWLAIAFATIIFILI 1110
>sp|P05135|SPIKE_IBV6 Spike glycoprotein OS=Avian infectious bronchitis
virus (strain 6/82) OX=11121 GN=S PE=3 SV=1
Length=1163
Score = 346 bits (888), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 203/544 (37%), Positives = 300/544 (55%), Gaps = 26/544 (5%)
Query 694 IAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIA 753
+ IP +F++++T E + M K ++C Y+CG+S EC L QYG C + ++ +
Sbjct 585 VLIPDSFNLTVTDEYIQTRMDKVQINCLQYVCGNSLECRKLFQQYGPVCDNILSVVNSVG 644
Query 754 AEQDRNTREVFAQVK-QMYKTPTLKYF--GGFNFSQILPDPLKPTKRSFIEDLLFNKVTL 810
++D ++ K + TP L G FN S +L P + RSFIEDLLF V
Sbjct 645 QKEDMELLYFYSSTKPSGFNTPVLSNVSTGEFNISLLLTPPSSASGRSFIEDLLFTSVES 704
Query 811 ADAGFMKQYGEC----LGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATA 866
Y +C LG + +DL CA+++NGL VLPP++T +M YT++LV+ A
Sbjct 705 VGLPTDDAYKKCTAGPLGFL--KDLACAREYNGLLVLPPIITAEMQTLYTSSLVASMAFG 762
Query 867 GWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTA 926
G T AGA IPFA Q+ R N +G+TQ++L++NQ++IA FNKAI +QE +TS A
Sbjct 763 GIT-SAGA---IPFATQLQARINHLGITQSLLFKNQEKIAASFNKAIGHMQEGFRSTSLA 818
Query 927 LGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSL 986
L ++QDVVN+ + L + L+ NFGAISSVL DI +LD ++A+ Q+DR+ITGRL SL
Sbjct 819 LQQIQDVVNKQSSILTETMASLNKNFGAISSVLQDIYQQLDSIQADAQVDRIITGRLSSL 878
Query 987 QTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLH 1046
+ + + LA K++ECV QS R FCG G H+++ PQ AP+G+VF+H
Sbjct 879 SVLASAKQAEYYRVSQQRELATQKINECVKSQSIRYSFCGNGRHVLTIPQNAPNGIVFIH 938
Query 1047 VTYVPSQERNFTTAPAIC-----HEGKAYFPR--EGVFVFNGTSWFITQRNFFSPQIITT 1099
TY P N T C A P G+F+ S++IT R+ + P+ IT
Sbjct 939 FTYTPESFVNVTAIVGFCVNPANASQYAIVPANGRGIFIQVNGSYYITARDMYMPRDITA 998
Query 1100 DNTFVSGNCDVVIGIINNTVYDP-LQPELDSFKEELDKYFKN--HTSPDVDLGDISGINA 1156
+ +C +N TV + + F +EL K++ + H PD D + +
Sbjct 999 GDIVTLTSCQANYVSVNKTVITTFVDNDDFDFDDELSKWWNDTKHELPDFDEFNYT---V 1055
Query 1157 SVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILL 1216
+++I EIDR+ V + LN+SLIDL+ L + YIKWPWYVWL I ++V +
Sbjct 1056 PILDIGSEIDRIQGVIQGLNDSLIDLETLSILKTYIKWPWYVWLAIAFLTIIFILVLCWI 1115
Query 1217 CCMT 1220
MT
Sbjct 1116 FFMT 1119
>sp|P12722|SPIKE_IBVD2 Spike glycoprotein OS=Avian infectious
bronchitis virus (strain D274) OX=11124 GN=S PE=3 SV=1
Length=1154
Score = 345 bits (885), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 202/544 (37%), Positives = 298/544 (55%), Gaps = 26/544 (5%)
Query 694 IAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIA 753
+ IP +F++++T E + M K ++C Y+CG+S EC L QYG C + ++ +
Sbjct 585 VLIPDSFNLTVTDEYIQTRMDKVQINCLQYVCGNSLECRKLFQQYGPVCDNILSVVNSVG 644
Query 754 AEQDRNTREVFAQVK-QMYKTPTLKYF--GGFNFSQILPDPLKPTKRSFIEDLLFNKVTL 810
++D ++ K + TP L G FN S +L P + RSFIEDLLF V
Sbjct 645 QKEDMELLHFYSSTKPSGFNTPVLSNVSTGEFNISLLLTPPSSASGRSFIEDLLFTSVES 704
Query 811 ADAGFMKQYGEC----LGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATA 866
Y +C LG + +DL CA+++NGL VLPP++T +M YT++LV+ A
Sbjct 705 VGLPTDDAYKKCTAGPLGFL--KDLACAREYNGLLVLPPIITAEMQTLYTSSLVASMAFG 762
Query 867 GWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTA 926
G T GA IPFA Q+ R N +G+TQ++L +NQ++IA FNKAI +QE +TS A
Sbjct 763 GIT-SVGA---IPFATQLQARINHLGITQSLLLKNQEKIAASFNKAIGHMQEGFRSTSLA 818
Query 927 LGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSL 986
L ++QDVVN+ + L + L+ NFGAISSVL DI +LD ++A+ Q+DR+ITGRL SL
Sbjct 819 LQQIQDVVNKQSSILTETMASLNKNFGAISSVLQDIYQQLDSIQADAQVDRIITGRLSSL 878
Query 987 QTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLH 1046
+ + + LA K++ECV QS R FCG G H+++ PQ AP+G+VF+H
Sbjct 879 SVLASAKQAEYYRVSQQRELATQKINECVKSQSIRYSFCGNGRHVLTIPQNAPNGIVFIH 938
Query 1047 VTYVPSQERNFTTAPAIC-----HEGKAYFPR--EGVFVFNGTSWFITQRNFFSPQIITT 1099
TY P N T C A P G+F+ S++IT R+ + P+ IT
Sbjct 939 FTYTPESFVNVTAIVGFCVNPANASQYAIVPANGRGIFIQVNGSYYITARDMYMPRDITA 998
Query 1100 DNTFVSGNCDVVIGIINNTVYDP-LQPELDSFKEELDKYFKN--HTSPDVDLGDISGINA 1156
+ +C +N TV + + F +EL K++ + H PD D + +
Sbjct 999 GDIVTLTSCQANYVSVNKTVITTFVDNDDFDFDDELSKWWNDTKHELPDFDEFNYT---V 1055
Query 1157 SVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILL 1216
+++I EIDR+ V + LN+SLIDL+ L + YIKWPWYVWL I +++ L
Sbjct 1056 PILDIGSEIDRIQGVIQGLNDSLIDLETLSILKTYIKWPWYVWLAIAFATIIFILILGWL 1115
Query 1217 CCMT 1220
MT
Sbjct 1116 FFMT 1119
>sp|P11223|SPIKE_IBVB Spike glycoprotein OS=Avian infectious bronchitis
virus (strain Beaudette) OX=11122 GN=S PE=1 SV=1
Length=1162
Score = 340 bits (873), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 193/534 (36%), Positives = 291/534 (54%), Gaps = 22/534 (4%)
Query 694 IAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIA 753
+ IP +F++++T E + M K ++C Y+CG S +C L QYG C + ++ +
Sbjct 584 VLIPNSFNLTVTDEYIQTRMDKVQINCLQYVCGSSLDCRKLFQQYGPVCDNILSVVNSVG 643
Query 754 AEQDRNTREVFAQVKQM-YKTPTLKYF--GGFNFSQILPDPLKPTKRSFIEDLLFNKVTL 810
++D ++ K + TP L G FN S +L +P KRS IEDLLF V
Sbjct 644 QKEDMELLNFYSSTKPAGFNTPVLSNVSTGEFNISLLLTNPSSRRKRSLIEDLLFTSVES 703
Query 811 ADAGFMKQYGECLGDINA--RDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGW 868
Y C +DL CA+++NGL VLPP++T +M A YT++LV+ A G
Sbjct 704 VGLPTNDAYKNCTAGPLGFFKDLACAREYNGLLVLPPIITAEMQALYTSSLVASMAFGGI 763
Query 869 TFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALG 928
T AA IPFA Q+ R N +G+TQ++L +NQ++IA FNKAI +QE +TS AL
Sbjct 764 T----AAGAIPFATQLQARINHLGITQSLLLKNQEKIAASFNKAIGHMQEGFRSTSLALQ 819
Query 929 KLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQT 988
++QDVV++ + L + L+ NFGAISSV+ +I + D ++A Q+DRLITGRL SL
Sbjct 820 QIQDVVSKQSAILTETMASLNKNFGAISSVIQEIYQQFDAIQANAQVDRLITGRLSSLSV 879
Query 989 YVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVT 1048
+ + + LA K++ECV QS R FCG G H+++ PQ AP+G+VF+H +
Sbjct 880 LASAKQAEYIRVSQQRELATQKINECVKSQSIRYSFCGNGRHVLTIPQNAPNGIVFIHFS 939
Query 1049 YVPSQERNFTTAPAICHEGK-----AYFPR--EGVFVFNGTSWFITQRNFFSPQIITTDN 1101
Y P N T C + A P G+F+ S++IT R+ + P+ IT +
Sbjct 940 YTPDSFVNVTAIVGFCVKPANASQYAIVPANGRGIFIQVNGSYYITARDMYMPRAITAGD 999
Query 1102 TFVSGNCDVVIGIINNTVYDP-LQPELDSFKEELDKYFKN--HTSPDVDLGDISGINASV 1158
+C +N TV + + F +EL K++ + H PD D + + +
Sbjct 1000 VVTLTSCQANYVSVNKTVITTFVDNDDFDFNDELSKWWNDTKHELPDFDKFNYT---VPI 1056
Query 1159 VNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMV 1212
++I EIDR+ V + LN+SLIDL++L + YIKWPWYVWL I +++
Sbjct 1057 LDIDSEIDRIQGVIQGLNDSLIDLEKLSILKTYIKWPWYVWLAIAFATIIFILI 1110
>sp|Q0Q466|SPIKE_BC512 Spike glycoprotein OS=Bat coronavirus 512/2005
OX=693999 GN=S PE=3 SV=1
Length=1371
Score = 334 bits (857), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 202/558 (36%), Positives = 299/558 (54%), Gaps = 43/558 (8%)
Query 694 IAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIA 753
I+IPTNF++S+ TE + + SVDC MY+C + C LL QY S C + AL A
Sbjct 782 ISIPTNFTMSVRTEYIQLFNKPVSVDCAMYVCNGNDRCKQLLSQYTSACKNIESALQLSA 841
Query 754 AEQDRNTREVFAQVKQMYKTPTLKYF--GGFNFSQILPDPLKPTKRSFIEDLLFNKVTLA 811
+ + + K T+ F GG+NF+ ILP P RS IED+LF+KV +
Sbjct 842 RLESMEVNSMLTVSDEALKLATISQFPGGGYNFTNILP--ANPGARSVIEDILFDKVVTS 899
Query 812 DAGFMKQ-YGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTF 870
G + + Y C ++ DL CAQ +NG+ VLP + + + Y+A+LV G G T
Sbjct 900 GLGTVDEDYKRCSNGLSIADLACAQHYNGIMVLPGVADWEKVHMYSASLVGGMTLGGIT- 958
Query 871 GAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAIS--------------QI 916
+A +PF+ + R N + + +VL NQ+ +AN FN AIS Q
Sbjct 959 ---SAAALPFSYAVQARLNYVALQTDVLQRNQQMLANSFNSAISNITLAFESVNNAIYQT 1015
Query 917 QESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQID 976
L T + AL K+QDVVN AL+ L QL +NF AIS+ + DI SRLD++ A+ Q+D
Sbjct 1016 SAGLNTVAEALSKVQDVVNGQGNALSQLTVQLQNNFQAISNSIGDIYSRLDQITADAQVD 1075
Query 977 RLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCG-KGYHLMSFP 1035
RLITGRL +L +V Q L + AE++AS LA K++ECV QS R FCG +G H+ S
Sbjct 1076 RLITGRLAALNAFVAQSLTKYAEVQASRTLAKQKVNECVKSQSPRYGFCGDEGEHIFSLT 1135
Query 1036 QAAPHGVVFLHVTYVPSQERNFTTAPAIC-HEGKAYFPREG---VFVFNGTSWFITQRNF 1091
QAAP G++FLH VP+ N T +C E A R+ +FV NG ++ ++ R
Sbjct 1136 QAAPQGLMFLHTVLVPNGFINVTAVTGLCVDETIAMTLRQSGFVLFVQNG-NYLVSPRKM 1194
Query 1092 FSPQIITTDNTFVSGNCDV-VIGIINNTVYDPLQPELDSFK--EELDKYFKNHTSPDVDL 1148
F P+ + C + + I NN + D + +D K +E+ N+T PD+ L
Sbjct 1195 FEPRRPEVADFVQVKTCTISYVNITNNQLPDIIPDYVDVNKTIDEILANLPNNTVPDLPL 1254
Query 1149 -----------GDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWY 1197
G+I+ + A +++ + L ++ +N+N +L+DLQ L + E +IKWPWY
Sbjct 1255 DVFNQTFLNLTGEIADLEARSESLKNTSEELRQLIQNINNTLVDLQWLNRVETFIKWPWY 1314
Query 1198 VWLGFIAGLIAIVMVTIL 1215
VWL + LI +V + +
Sbjct 1315 VWLAIVIALILVVSLLVF 1332
>sp|P24413|SPIKE_CVPRM Spike glycoprotein OS=Porcine respiratory
coronavirus (strain RM4) OX=11148 GN=S PE=1 SV=1
Length=1225
Score = 332 bits (850), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 247/765 (32%), Positives = 374/765 (49%), Gaps = 109/765 (14%)
Query 522 NQCVNFNFNGLTGTGVLTPSSKRFQP---FQQFGRDVSDFTDSVRDPKTSEILDISPCSF 578
+ C ++N G TG G++ +++ + D+ FT+ V D I ++PC
Sbjct 460 DSCTDYNIYGRTGVGIIRQTNRTILSGLYYTSLSGDLLGFTN-VSD---GVIYSVTPCDV 515
Query 579 GGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIG 638
+ I GT + ++ + + T +T TP + YS N G IG
Sbjct 516 SAQAAIIDGTIVGAITSINSELLGLTHWTT-------TPNFYYYSIYNYTNDKTRGTPIG 568
Query 639 AEHVDTSYECDIPI---GAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIA 695
+ VD C+ I G+C + V + T S G I+ N +
Sbjct 569 SNDVD----CEPVITYSNIGVCKNGALV----------FINVTHSDGDVQPISTGN--VT 612
Query 696 IPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAE 755
IPTNF+IS+ E + V S+DC+ Y+C + C LL QY S C + +AL+ A
Sbjct 613 IPTNFTISVQVEYIQVYTTPVSIDCSRYVCNGNPRCNKLLTQYVSACQTIEQALAMGARL 672
Query 756 QDRNTREVFAQVKQMYKTPTLKYF----------------GGF---NFSQILP-DPLKPT 795
++ + + K +++ F GGF ILP D K
Sbjct 673 ENMEVDSMLFVSENALKLASVEAFNSSETLDPIYKEWPNIGGFWLEGLKYILPSDNSKRK 732
Query 796 KRSFIEDLLFNKVTLADAGFMKQ-YGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAA 854
RS IEDLLF+KV + G + + Y C G + DL+CAQ +NG+ VLP + D +
Sbjct 733 YRSAIEDLLFSKVVTSGLGTVDEDYKRCTGGYDIADLVCAQYYNGIMVLPGVANADKMTM 792
Query 855 YTAALVSGTATAGWTFGA--GAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKA 912
YTA+L G T GA G A+ IPFA+ + R N + + +VL +NQ+ +A+ FN+A
Sbjct 793 YTASLAGGI-----TLGALGGGAVAIPFAVAVQARLNYVALQTDVLNKNQQILASAFNQA 847
Query 913 ISQIQES--------------LTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSV 958
I I +S LTT + AL K+QDVVN QAL L QL +NF AISS
Sbjct 848 IGNITQSFGKVNDAIHQTSRGLTTVAKALAKVQDVVNTQGQALRHLTVQLQNNFQAISSS 907
Query 959 LNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQ 1018
++DI +RLD++ A+ Q+DRLITGRL +L +V+Q L R AE+RAS LA K++ECV Q
Sbjct 908 ISDIYNRLDELSADAQVDRLITGRLTALNAFVSQTLTRQAEVRASRQLAKDKVNECVRSQ 967
Query 1019 SKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHE------GKAYFP 1072
S+R FCG G HL S AAP+G++F H +P+ T IC G
Sbjct 968 SQRFGFCGNGTHLFSLANAAPNGMIFFHTVLLPTAYETVTAWSGICALDVDRTFGLVVKD 1027
Query 1073 REGVFVFN-GTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYD--PLQPEL-- 1127
+ N +++T R + P++ T+ + CDV+ +N TV D + P+
Sbjct 1028 VQLTLFRNLDDKFYLTPRTMYQPRVATSSDFVQIEGCDVL--FVNTTVSDLPSIIPDYID 1085
Query 1128 --DSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLN-----------EVA-- 1172
+ ++ L+ + N T P++ L D+ NA+ +N+ EID L E+A
Sbjct 1086 INQTVQDILENFRPNWTVPELTL-DV--FNATYLNLTGEIDDLEFRSEKLHNTTVELAIL 1142
Query 1173 -KNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILL 1216
N+N ++++L+ L + E Y+KWPWYVWL + GL+ I + +LL
Sbjct 1143 IDNINNTVVNLEWLNRIETYVKWPWYVWL--LIGLVVIFCIPLLL 1185
>sp|P27655|SPIKE_CVPR8 Spike glycoprotein OS=Porcine respiratory
coronavirus (strain 86/137004 / isolate British) OX=33736
GN=S PE=3 SV=1
Length=1225
Score = 331 bits (849), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 244/765 (32%), Positives = 373/765 (49%), Gaps = 109/765 (14%)
Query 522 NQCVNFNFNGLTGTGVLTPSSKRFQP---FQQFGRDVSDFTDSVRDPKTSEILDISPCSF 578
+ C ++N G TG G++ +++ + D+ F ++ I ++PC
Sbjct 460 DSCTDYNIYGRTGVGIIRQTNRTLLSGLYYTSLSGDLLGF----KNVSDGVIYSVTPCDV 515
Query 579 GGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIG 638
+ I G A++ + A+ +TP + YS N G IG
Sbjct 516 SAQAAIIDG-------AIVGAITSINSELLALTHWTITPNFYYYSIYNYTNDKTRGTPIG 568
Query 639 AEHVDTSYECDIPI---GAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIA 695
+ VD C+ I G+C + V + T S G I+ N +
Sbjct 569 SNDVD----CEPVITYSNIGVCKNGALV----------FINVTHSDGDVQPISTGN--VT 612
Query 696 IPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAE 755
IPTNF+IS+ E + V S+DC+ Y+C + C LL QY S C + +AL+ A
Sbjct 613 IPTNFTISVQVEYIQVYTTPVSIDCSRYVCNGNPRCNKLLTQYVSACQTIEQALAMGARL 672
Query 756 QDRNTREVFAQVKQMYKTPTLKYF----------------GGF---NFSQILP-DPLKPT 795
++ + + K +++ F GGF ILP D K
Sbjct 673 ENMEVDSMLFVSENALKLASVEAFNSSETLDPIYKEWPNIGGFWLEGLKYILPSDNSKRK 732
Query 796 KRSFIEDLLFNKVTLADAGFMKQ-YGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAA 854
RS IEDLLF+KV + G + + Y C G + DL+CAQ +NG+ VLP + D +
Sbjct 733 YRSAIEDLLFSKVVTSGLGTVDEDYKRCTGGYDIADLVCAQYYNGIMVLPGVANADKMTM 792
Query 855 YTAALVSGTATAGWTFGA--GAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKA 912
YTA+L G T GA G A+ IPFA+ + R N + + +VL +NQ+ +A+ FN+A
Sbjct 793 YTASLAGGI-----TLGALGGGAVAIPFAVAVQARLNYVALQTDVLNKNQQILASAFNQA 847
Query 913 ISQIQES--------------LTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSV 958
I I +S LTT + AL K+QDVVN QAL L QL +NF AISS
Sbjct 848 IGNITQSFGKVNDAIHQTSRGLTTVAKALAKVQDVVNTQGQALRHLTVQLQNNFQAISSS 907
Query 959 LNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQ 1018
++DI +RLD++ A+ Q+DRLITGRL +L +V+Q L R AE+RAS LA K++ECV Q
Sbjct 908 ISDIYNRLDELSADAQVDRLITGRLTALNAFVSQTLTRQAEVRASRQLAKDKVNECVKSQ 967
Query 1019 SKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICH-EGKAYFP----- 1072
S R FCG G HL S AAP+G++F H +P+ T IC +G F
Sbjct 968 SHRFGFCGNGTHLFSLANAAPNGMIFFHTVLLPTAYETVTAWSGICALDGDRTFGLVVKD 1027
Query 1073 -REGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYD--PLQPEL-- 1127
+ +F ++++T R + P++ T+ + CDV+ +N TV D + P+
Sbjct 1028 VQLTLFRNLDDNFYLTPRTMYQPRVATSSDFVQIEGCDVL--FVNTTVSDLPSIIPDYID 1085
Query 1128 --DSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLN-----------EVA-- 1172
+ ++ L+ + N T P++ + D+ NA+ +N+ EID L E+A
Sbjct 1086 INQTVQDILENFRPNWTVPELTM-DV--FNATYLNLTGEIDDLEFRSEKLHNTTVELAIL 1142
Query 1173 -KNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILL 1216
N+N +L++L+ L + E Y+KWPWYVWL + GL+ I + +LL
Sbjct 1143 IDNINNTLVNLEWLNRIETYVKWPWYVWL--LIGLVVIFCIPLLL 1185
>sp|Q65984|SPIKE_CVCAK Spike glycoprotein OS=Canine coronavirus
(strain K378) OX=33732 GN=S PE=1 SV=1
Length=1453
Score = 330 bits (847), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 243/785 (31%), Positives = 378/785 (48%), Gaps = 111/785 (14%)
Query 503 LLNAPATVCGPKLSTDLIKNQCVNFNFNGLTGTGVLTPSSKRFQP---FQQFGRDVSDFT 559
++ P+ G + L + C ++N G+TG G++ ++ + D+ F
Sbjct 669 IVGVPSDNSGLHDLSVLHLDSCTDYNIYGITGVGIIRQTNSTLLSGLYYTSLSGDLLGF- 727
Query 560 DSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAW 619
++ I ++PC + + G + ++ + + T +T TP +
Sbjct 728 ---KNVSDGVIYSVTPCDVSAHAAVIDGAIVGAMTSINSELLGLTHWTT-------TPNF 777
Query 620 RIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPI----GAGICASYHTVSLLRSTSQKSIV 675
YS N + G I + VD C+ PI G+C + V +
Sbjct 778 YYYSIYNYTNERTRGTAIDSNDVD----CE-PIITYSNIGVCKNGALV----------FI 822
Query 676 AYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLL 735
T S G I+ N + IPTNF+IS+ E + V S+DC+ Y+C + C LL
Sbjct 823 NVTHSDGDVQPISTGN--VTIPTNFTISVQVEYIQVYTTPVSIDCSRYVCNGNPRCNKLL 880
Query 736 LQYGSFCTQLNRALS---------------------GIAAEQDRNTREVFAQVKQMYKTP 774
QY S C + +AL+ +A+ + N+ E + + +
Sbjct 881 TQYVSACQTIEQALAMGARLENMEIDSMLFVSENALKLASVEAFNSTETLDPIYKEWPNI 940
Query 775 TLKYFGGFNFSQILPDPLKPTK-RSFIEDLLFNKVTLADAGFMKQ-YGECLGDINARDLI 832
+ GG ILP K RS IEDLLF+KV + G + + Y C G + DL+
Sbjct 941 GGSWLGGL--KDILPSHNSKRKYRSAIEDLLFDKVVTSGLGTVDEDYKRCTGGYDIADLV 998
Query 833 CAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIG 892
CAQ +NG+ VLP + DD +A YTA+L G G A+ IPFA+ + R N +
Sbjct 999 CAQYYNGIMVLPGVANDDKMAMYTASLAGGITLGSL---GGGAVSIPFAIAVQARLNYVA 1055
Query 893 VTQNVLYENQKQIANQFNKAISQIQES--------------LTTTSTALGKLQDVVNQNA 938
+ +VL +NQ+ +AN FN+AI I ++ L T + L K+QDVVN
Sbjct 1056 LQTDVLNKNQQILANAFNQAIGNITQAFGKVNDAIHQTSQGLATVAKVLAKVQDVVNTQG 1115
Query 939 QALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAA 998
QAL+ L QL +NF AISS ++DI +RLD++ A+ Q+DRLITGRL +L +V+Q L R A
Sbjct 1116 QALSHLTLQLQNNFQAISSSISDIYNRLDELSADAQVDRLITGRLTALNAFVSQTLTRQA 1175
Query 999 EIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFT 1058
E+RAS LA K++ECV QS+R FCG G HL S AAP+G++F H +P+ T
Sbjct 1176 EVRASRQLAKDKVNECVRSQSQRFGFCGNGTHLFSLANAAPNGMIFFHTVLLPTAYETVT 1235
Query 1059 TAPAIC-HEGKAYFP------REGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVV 1111
IC +G F + +F +++T R + P + T+ + CDV+
Sbjct 1236 AWSGICASDGDRTFGLVVKDVQLTLFRNLDDKFYLTPRTMYQPIVATSSDFVQIEGCDVL 1295
Query 1112 IGIINNTVYD--PLQPEL----DSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEI 1165
+N TV D + P+ + ++ L+ + N T P++ L DI NA+ +N+ EI
Sbjct 1296 --FVNATVIDLPSIIPDYIDINQTVQDILENFRPNWTVPELPL-DI--FNATYLNLTGEI 1350
Query 1166 DRLN-----------EVA---KNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVM 1211
+ L E+A N+N +L++L+ L + E Y+KWPWYVWL + GL+ I
Sbjct 1351 NDLEFRSEKLHNTTVELAILIDNINNTLVNLEWLNRIETYVKWPWYVWL--LIGLVVIFC 1408
Query 1212 VTILL 1216
+ ILL
Sbjct 1409 IPILL 1413
>sp|Q6Q1S2|SPIKE_CVHNL Spike glycoprotein OS=Human coronavirus
NL63 OX=277944 GN=S PE=1 SV=1
Length=1356
Score = 329 bits (844), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 247/822 (30%), Positives = 384/822 (47%), Gaps = 117/822 (14%)
Query 474 CYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFNGLT 533
C +PL YT+ I Y + P V G + ++L+ N C +N
Sbjct 577 CNFPLEATWHYTSYTIVGALYVTWSEGNSITGVPYPVSGIREFSNLVLNNCTKYNIYDYV 636
Query 534 GTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSE 593
GTG++ S+ Q ++ ++S +L S G + ++TP N +
Sbjct 637 GTGIIRSSN------QSLAGGITYVSNS------GNLLGFKNVSTGNIFIVTP-CNQPDQ 683
Query 594 VAVLYQDVNCTDVSTAIHAD--------QLTPAWRIYSTGNNVFQTQAGCLIGAEHVDTS 645
VAV Q + TA++ QL + + + GNN C +
Sbjct 684 VAVYQQSI--IGAMTAVNESRYGLQNLLQLPNFYYVSNGGNN-------CTTAV----MT 730
Query 646 YECDIPIGAGICASYHTVSLL-RSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISI 704
Y GICA + + R++S I S+I +N ++IP+N++ S+
Sbjct 731 YS-----NFGICADGSLIPVRPRNSSDNGI----------SAIITAN--LSIPSNWTTSV 773
Query 705 TTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVF 764
E + ++ VDC Y+C + C NLL QY S C + AL A + + +
Sbjct 774 QVEYLQITSTPIVVDCATYVCNGNPRCKNLLKQYTSACKTIEDALRLSAHLETNDVSSML 833
Query 765 AQVKQMYKTPTLKYFGGFNFSQILPD----PLKPTKRSFIEDLLFNKVTLADAGFMK-QY 819
+ + FG +N S +LP + RS +EDLLF+KV + G + Y
Sbjct 834 TFDSNAFSLANVTSFGDYNLSSVLPQRNIRSSRIAGRSALEDLLFSKVVTSGLGTVDVDY 893
Query 820 GECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIP 879
C ++ DL CAQ +NG+ VLP + + +A YT +L+ G G T +A IP
Sbjct 894 KSCTKGLSIADLACAQYYNGIMVLPGVADAERMAMYTGSLIGGMVLGGLT----SAAAIP 949
Query 880 FAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAI--------------SQIQESLTTTST 925
F++ + R N + + +VL ENQK +A FNKAI +Q E++ T +
Sbjct 950 FSLALQARLNYVALQTDVLQENQKILAASFNKAINNIVASFSSVNDAITQTAEAIHTVTI 1009
Query 926 ALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQS 985
AL K+QDVVNQ ALN L QL NF AIS+ + I RLD ++A+ Q+DRLITGRL +
Sbjct 1010 ALNKIQDVVNQQGSALNHLTSQLRHNFQAISNSIQAIYDRLDSIQADQQVDRLITGRLAA 1069
Query 986 LQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFL 1045
L +V+Q L + E+R S LA K++ECV QS R FCG G H+ S +AP G++FL
Sbjct 1070 LNAFVSQVLNKYTEVRGSRRLAQQKINECVKSQSNRYGFCGNGTHIFSIVNSAPDGLLFL 1129
Query 1046 HVTYVPSQERNFTTAPAICHEG-KAYFPREGVFVF---NGTSWFITQRNFFSPQIITTDN 1101
H +P+ +N IC +G Y R+ V NG + +T R F P++ +
Sbjct 1130 HTVLLPTDYKNVKAWSGICVDGIYGYVLRQPNLVLYSDNGV-FRVTSRVMFQPRLPVLSD 1188
Query 1102 TFVSGNCDVVIGIINNTVYDPLQPE-------LDSFKEELDKYFKNHTSPDVDLGDISGI 1154
NC+V I+ + P+ L F + L KY K P+ DL +
Sbjct 1189 FVQIYNCNVTFVNISRVELHTVIPDYVDVNKTLQEFAQNLPKYVK----PNFDL---TPF 1241
Query 1155 NASVVNIQKEIDRLNEVAKNL--------------NESLIDLQELGKYEQYIKWPWYVWL 1200
N + +N+ E+ +L +L N + +DL+ L ++E YIKWPW+VWL
Sbjct 1242 NLTYLNLSSELKQLEAKTASLFQTTVELQGLIDQINSTYVDLKLLNRFENYIKWPWWVWL 1301
Query 1201 GFIAGLIAIVMVTILLCCMTS----CCSCL----KGACSCGS 1234
I+ + +++ ++ CC+++ CC+CL +G C CGS
Sbjct 1302 -IISVVFVVLLSLLVFCCLSTGCCGCCNCLTSSMRGCCDCGS 1342
>sp|P10033|SPIKE_FIPV Spike glycoprotein OS=Feline coronavirus
(strain FIPV WSU-79/1146) OX=33734 GN=S PE=1 SV=1
Length=1452
Score = 330 bits (846), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 246/794 (31%), Positives = 383/794 (48%), Gaps = 118/794 (15%)
Query 503 LLNAPATVCGPKLSTDLIKNQCVNFNFNGLTGTGVLTPSSKRFQP---FQQFGRDVSDFT 559
++ P+ G + L + C ++N G TG G++ ++ + D+ F
Sbjct 668 IVGVPSDNSGLHDLSVLHLDSCTDYNIYGRTGVGIIRRTNSTLLSGLYYTSLSGDLLGF- 726
Query 560 DSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAW 619
++ I ++PC + + G + ++ + + T +T TP +
Sbjct 727 ---KNVSDGVIYSVTPCDVSAQAAVIDGAIVGAMTSINSELLGLTHWTT-------TPNF 776
Query 620 RIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPI---GAGICASYHTVSLLRSTSQKSIVA 676
YS N + G I + VD C+ I G+C + V +
Sbjct 777 YYYSIYNYTSERTRGTAIDSNDVD----CEPVITYSNIGVCKNGALV----------FIN 822
Query 677 YTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLL 736
T S G I+ N + IPTNF+IS+ E M V S+DC Y+C + C LL
Sbjct 823 VTHSDGDVQPISTGN--VTIPTNFTISVQVEYMQVYTTPVSIDCARYVCNGNPRCNKLLT 880
Query 737 QYGSFCTQLNRALS---------------------GIAAEQDRNTREVFAQVKQMYKTPT 775
QY S C + +AL+ +A+ + N+ E + + + +
Sbjct 881 QYVSACQTIEQALAMGARLENMEVDSMLFVSENALKLASVEAFNSTENLDPIYKEWPSIG 940
Query 776 LKYFGGFNFSQILPDPLKPTKRSF---IEDLLFNKVTLADAGFMKQ-YGECLGDINARDL 831
+ GG ILP +KR + IEDLLF+KV + G + + Y C G + DL
Sbjct 941 GSWLGGL--KDILPS--HNSKRKYGSAIEDLLFDKVVTSGLGTVDEDYKRCTGGYDIADL 996
Query 832 ICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGA--GAALQIPFAMQMAYRFN 889
+CAQ +NG+ VLP + D + YTA+L G T GA G A+ IPFA+ + R N
Sbjct 997 VCAQYYNGIMVLPGVANADKMTMYTASLAGGI-----TLGALGGGAVAIPFAVAVQARLN 1051
Query 890 GIGVTQNVLYENQKQIANQFNKAISQIQES--------------LTTTSTALGKLQDVVN 935
+ + +VL +NQ+ +AN FN+AI I ++ L T + AL K+QDVVN
Sbjct 1052 YVALQTDVLNKNQQILANAFNQAIGNITQAFGKVNDAIHQTSQGLATVAKALAKVQDVVN 1111
Query 936 QNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI 995
QAL+ L QL +NF AISS ++DI +RLD++ A+ Q+DRLITGRL +L +V+Q L
Sbjct 1112 TQGQALSHLTVQLQNNFQAISSSISDIYNRLDELSADAQVDRLITGRLTALNAFVSQTLT 1171
Query 996 RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQER 1055
R AE+RAS LA K++ECV QS+R FCG G HL S AAP+G++F H +P+
Sbjct 1172 RQAEVRASRQLAKDKVNECVRSQSQRFGFCGNGTHLFSLANAAPNGMIFFHTVLLPTAYE 1231
Query 1056 NFTTAPAIC-HEGKAYFP------REGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNC 1108
T IC +G F + +F +++T R + P++ T+ + C
Sbjct 1232 TVTAWSGICASDGDRTFGLVVKDVQLTLFRNLDDKFYLTPRTMYQPRVATSSDFVQIEGC 1291
Query 1109 DVVIGIINNTVYD--PLQPEL----DSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQ 1162
DV+ +N TV D + P+ + ++ L+ Y N T P+ L DI NA+ +N+
Sbjct 1292 DVL--FVNATVIDLPSIIPDYIDINQTVQDILENYRPNWTVPEFTL-DI--FNATYLNLT 1346
Query 1163 KEIDRLN-----------EVA---KNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIA 1208
EID L E+A N+N +L++L+ L + E Y+KWPWYVWL + GL+
Sbjct 1347 GEIDDLEFRSEKLHNTTVELAILIDNINNTLVNLEWLNRIETYVKWPWYVWL--LIGLVV 1404
Query 1209 IVMVTILL-CCMTS 1221
+ + +LL CC ++
Sbjct 1405 VFCIPLLLFCCFST 1418
>sp|P07946|SPIKE_CVPPU Spike glycoprotein OS=Porcine transmissible
gastroenteritis coronavirus (strain Purdue) OX=11151 GN=S
PE=1 SV=2
Length=1447
Score = 328 bits (842), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 244/786 (31%), Positives = 380/786 (48%), Gaps = 113/786 (14%)
Query 503 LLNAPATVCGPKLSTDLIKNQCVNFNFNGLTGTGVLTPSSKRFQP---FQQFGRDVSDFT 559
++ P+ G + L + C ++N G TG G++ +++ + D+ F
Sbjct 663 IVGVPSDNSGVHDLSVLHLDSCTDYNIYGRTGVGIIRQTNRTLLSGLYYTSLSGDLLGF- 721
Query 560 DSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAW 619
++ I ++PC + + GT + ++ + + T +T TP +
Sbjct 722 ---KNVSDGVIYSVTPCDVSAQAAVIDGTIVGAITSINSELLGLTHWTT-------TPNF 771
Query 620 RIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPI---GAGICASYHTVSLLRSTSQKSIVA 676
YS N G I + VD C+ I G+C + V +
Sbjct 772 YYYSIYNYTNDRTRGTAIDSNDVD----CEPVITYSNIGVCKNGAFV----------FIN 817
Query 677 YTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLL 736
T S G I+ N + IPTNF+IS+ E + V S+DC+ Y+C + C LL
Sbjct 818 VTHSDGDVQPISTGN--VTIPTNFTISVQVEYIQVYTTPVSIDCSRYVCNGNPRCNKLLT 875
Query 737 QYGSFCTQLNRALS---------------------GIAAEQDRNTREVFAQVKQMYKTPT 775
QY S C + +AL+ +A+ + N+ E + + +
Sbjct 876 QYVSACQTIEQALAMGARLENMEVDSMLFVSENALKLASVEAFNSSETLDPIYKEWPNIG 935
Query 776 LKYFGGFNFSQILPDPLKPTK-RSFIEDLLFNKVTLADAGFMKQ-YGECLGDINARDLIC 833
+ G + ILP K RS IEDLLF+KV + G + + Y C G + DL+C
Sbjct 936 GSWLEGLKY--ILPSHNSKRKYRSAIEDLLFDKVVTSGLGTVDEDYKRCTGGYDIADLVC 993
Query 834 AQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGA--GAALQIPFAMQMAYRFNGI 891
AQ +NG+ VLP + D + YTA+L G T GA G A+ IPFA+ + R N +
Sbjct 994 AQYYNGIMVLPGVANADKMTMYTASLAGGI-----TLGALGGGAVAIPFAVAVQARLNYV 1048
Query 892 GVTQNVLYENQKQIANQFNKAISQIQES--------------LTTTSTALGKLQDVVNQN 937
+ +VL +NQ+ +A+ FN+AI I +S L T + AL K+QDVVN
Sbjct 1049 ALQTDVLNKNQQILASAFNQAIGNITQSFGKVNDAIHQTSRGLATVAKALAKVQDVVNIQ 1108
Query 938 AQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRA 997
QAL+ L QL +NF AISS ++DI +RLD++ A+ Q+DRLITGRL +L +V+Q L R
Sbjct 1109 GQALSHLTVQLQNNFQAISSSISDIYNRLDELSADAQVDRLITGRLTALNAFVSQTLTRQ 1168
Query 998 AEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNF 1057
AE+RAS LA K++ECV QS+R FCG G HL S AAP+G++F H +P+
Sbjct 1169 AEVRASRQLAKDKVNECVRSQSQRFGFCGNGTHLFSLANAAPNGMIFFHTVLLPTAYETV 1228
Query 1058 TTAPAIC-HEGKAYFP------REGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDV 1110
T P IC +G F + +F +++T R + P++ T+ + CDV
Sbjct 1229 TAWPGICASDGDRTFGLVVKDVQLTLFRNLDDKFYLTPRTMYQPRVATSSDFVQIEGCDV 1288
Query 1111 VIGIINNTVYD--PLQPEL----DSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKE 1164
+ +N TV D + P+ + ++ L+ + N T P++ DI NA+ +N+ E
Sbjct 1289 L--FVNATVSDLPSIIPDYIDINQTVQDILENFRPNWTVPELTF-DI--FNATYLNLTGE 1343
Query 1165 IDRLN-----------EVA---KNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIV 1210
ID L E+A N+N +L++L+ L + E Y+KWPWYVWL + GL+ I
Sbjct 1344 IDDLEFRSEKLHNTTVELAILIDNINNTLVNLEWLNRIETYVKWPWYVWL--LIGLVVIF 1401
Query 1211 MVTILL 1216
+ +LL
Sbjct 1402 CIPLLL 1407
>sp|P33470|SPIKE_CVPMI Spike glycoprotein OS=Porcine transmissible
gastroenteritis coronavirus (strain Miller) OX=33737 GN=S
PE=3 SV=2
Length=1449
Score = 327 bits (838), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 241/767 (31%), Positives = 372/767 (49%), Gaps = 113/767 (15%)
Query 522 NQCVNFNFNGLTGTGVLTPSSKRFQP---FQQFGRDVSDFTDSVRDPKTSEILDISPCSF 578
+ C ++N G TG G++ +++ + D+ F ++ I ++PC
Sbjct 684 DSCTDYNIYGRTGVGIIRQTNRTLLSGLYYTSLSGDLLGF----KNVSDGVIYSVTPCDV 739
Query 579 GGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIG 638
+ + GT + ++ + + T +T TP + YS N G I
Sbjct 740 SAQAAVIDGTIVGAITSINSELLGLTHWTT-------TPNFYYYSIYNYTNDRTRGTAID 792
Query 639 AEHVDTSYECDIPI---GAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIA 695
+ VD C+ I G+C + V + T S G I+ N +
Sbjct 793 SNDVD----CEPVITYSNIGVCKNGALV----------FINVTHSDGDVQPISTGN--VT 836
Query 696 IPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALS----- 750
IPTNF+IS+ E + V S+DC+ Y+C + C LL QY S C + +AL+
Sbjct 837 IPTNFTISVQVEYIQVYTTPVSIDCSRYVCNGNPRCNKLLTQYVSACQTIEQALAMGARL 896
Query 751 ----------------GIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILP-DPLK 793
+A+ + N+ E + + + + G + ILP D K
Sbjct 897 ENMEVGSMLFVSENALKLASVEAFNSSETLDPIYKEWPNIGGSWLEGLKY--ILPSDNSK 954
Query 794 PTKRSFIEDLLFNKVTLADAGFMKQ-YGECLGDINARDLICAQKFNGLTVLPPLLTDDMI 852
RS IEDLLF KV + G + + Y C G + DL+CAQ +NG+ VLP + D +
Sbjct 955 RKYRSAIEDLLFAKVVTSGLGTVDEDYKRCTGGYDIADLVCAQYYNGIMVLPGVANADKM 1014
Query 853 AAYTAALVSGTATAGWTFGA--GAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFN 910
YTA+L G T GA G A+ IPFA+ + R N + + +VL +NQ+ +A+ FN
Sbjct 1015 TMYTASLAGGI-----TLGALGGGAVAIPFAVAVQARLNYVALQTDVLNKNQQILASAFN 1069
Query 911 KAISQIQES--------------LTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAIS 956
+AI I +S L T + AL K+QDVVN QAL+ L QL +NF AIS
Sbjct 1070 QAIGNITQSFGKVNDAIHQTSRGLATVAKALAKVQDVVNTQGQALSHLTVQLQNNFQAIS 1129
Query 957 SVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVL 1016
S ++DI +RLD++ A+ Q+DRLITGRL +L +V+Q L R AE+RAS LA K++ECV
Sbjct 1130 SSISDIYNRLDELSADAQVDRLITGRLTALNAFVSQTLTRQAEVRASRQLAKDKVNECVR 1189
Query 1017 GQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICH-EGKAYFP--- 1072
QS+R FCG G HL S AAP+G++F H +P+ T IC +G F
Sbjct 1190 SQSQRFGFCGNGTHLFSLANAAPNGMIFFHTVLLPTAYETVTAWAGICALDGDRTFGLVV 1249
Query 1073 ---REGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYD--PLQPEL 1127
+ +F +++T R + P++ T+ + CDV+ +N TV D + P+
Sbjct 1250 KDVQLTLFRNLDDKFYLTPRTMYQPRVATSSDFVQIEGCDVL--FVNATVSDLPSIIPDY 1307
Query 1128 ----DSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLN-----------EVA 1172
+ ++ L+ + N T P++ DI NA+ +N+ EID L E+A
Sbjct 1308 IDINQTVQDILENFRPNWTVPELTF-DI--FNATYLNLTGEIDDLEFRSEKLHNTTVELA 1364
Query 1173 ---KNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILL 1216
N+N +L++L+ L + E Y+KWPWYVWL + GL+ I + +LL
Sbjct 1365 ILIDNINNTLVNLEWLNRIETYVKWPWYVWL--LIGLVVIFCIPLLL 1409
>sp|Q01977|SPIKE_CVPRT Spike glycoprotein OS=Porcine transmissible
gastroenteritis coronavirus (strain NEB72-rt) OX=33738
GN=S PE=3 SV=1
Length=1447
Score = 327 bits (837), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 243/786 (31%), Positives = 379/786 (48%), Gaps = 113/786 (14%)
Query 503 LLNAPATVCGPKLSTDLIKNQCVNFNFNGLTGTGVLTPSSKRFQP---FQQFGRDVSDFT 559
++ P+ G + L + C ++N G TG G++ +++ + D+ F
Sbjct 663 IVGVPSDNSGVHDLSVLHLDSCTDYNIYGRTGVGIIRKTNRTLLSGLYYTSLSGDLLGF- 721
Query 560 DSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAW 619
++ I ++PC + + GT + ++ + + T +T TP +
Sbjct 722 ---KNVSDGVIYSVTPCDVSAQAAVIDGTIVGAITSINSELLGLTHWTT-------TPNF 771
Query 620 RIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPI---GAGICASYHTVSLLRSTSQKSIVA 676
YS N G I + VD C+ I G+C + V +
Sbjct 772 YYYSIYNYTNDRTRGTAIDSNDVD----CEPVITYSNIGVCKNGAFV----------FIN 817
Query 677 YTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLL 736
T S G I+ N + IPTNF+IS+ E + V S+DC+ Y+C + C LL
Sbjct 818 VTHSDGDVQPISTGN--VTIPTNFTISVQVEYIQVYTTPVSIDCSRYVCNGNPRCNKLLT 875
Query 737 QYGSFCTQLNRALS---------------------GIAAEQDRNTREVFAQVKQMYKTPT 775
QY S C + +AL+ +A+ + N+ E + + +
Sbjct 876 QYVSACQTIEQALAMGARLENMEVDSMLFVSENALKLASVEAFNSSETLDPIYKEWPNIG 935
Query 776 LKYFGGFNFSQILPDPLKPTK-RSFIEDLLFNKVTLADAGFMKQ-YGECLGDINARDLIC 833
+ G + ILP K RS IEDLLF+KV + G + + Y C G + DL+C
Sbjct 936 GSWLEGLKY--ILPSHNSKRKYRSAIEDLLFDKVVTSGLGTVDEDYKRCTGGYDIADLVC 993
Query 834 AQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGA--GAALQIPFAMQMAYRFNGI 891
AQ +NG+ VLP + D + YTA+L G T GA G A+ IPFA+ + R N +
Sbjct 994 AQYYNGIMVLPGVANADKMTMYTASLAGGI-----TLGALGGGAVAIPFAVAVQARLNYV 1048
Query 892 GVTQNVLYENQKQIANQFNKAISQIQES--------------LTTTSTALGKLQDVVNQN 937
+ +VL +NQ+ +A+ FN+AI I +S L T + AL K+QDVV
Sbjct 1049 ALQTDVLNKNQQILASAFNQAIGNITQSFGKVNDAIHXTSRGLATVAKALAKVQDVVXIQ 1108
Query 938 AQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRA 997
QAL+ L QL +NF AISS ++DI +RLD++ A+ Q+DRLITGRL +L +V+Q L R
Sbjct 1109 GQALSHLTVQLQNNFQAISSSISDIYNRLDELSADAQVDRLITGRLTALNAFVSQTLTRQ 1168
Query 998 AEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNF 1057
AE+RAS LA K++ECV QS+R FCG G HL S AAP+G++F H +P+
Sbjct 1169 AEVRASRQLAKDKVNECVRSQSQRFGFCGNGTHLFSLANAAPNGMIFFHTVLLPTAYETV 1228
Query 1058 TTAPAIC-HEGKAYFP------REGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDV 1110
T P IC +G F + +F +++T R + P++ T+ + CDV
Sbjct 1229 TAWPGICASDGDRTFGLVVKDVQLTLFRNLDDKFYLTPRTMYQPRVATSSDFVQIEGCDV 1288
Query 1111 VIGIINNTVYD--PLQPEL----DSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKE 1164
+ +N TV D + P+ + ++ L+ + N T P++ DI NA+ +N+ E
Sbjct 1289 L--FVNATVSDLPSIIPDYIDINQTVQDILENFRPNWTVPELTF-DI--FNATYLNLTGE 1343
Query 1165 IDRLN-----------EVA---KNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIV 1210
ID L E+A N+N +L++L+ L + E Y+KWPWYVWL + GL+ I
Sbjct 1344 IDDLEFRSEKLHNTTVELAILIDNINNTLVNLEWLNRIETYVKWPWYVWL--LIGLVVIF 1401
Query 1211 MVTILL 1216
+ +LL
Sbjct 1402 CIPLLL 1407
>sp|Q7T6T3|SPIKE_CVCBG Spike glycoprotein OS=Canine coronavirus
(strain BGF10) OX=441619 GN=S PE=3 SV=1
Length=1453
Score = 325 bits (834), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 244/787 (31%), Positives = 381/787 (48%), Gaps = 115/787 (15%)
Query 503 LLNAPATVCGPKLSTDLIKNQCVNFNFNGLTGTGVLTPSSKRFQP---FQQFGRDVSDFT 559
++ P+ G + L + C ++N G G G++ ++ + D+ F
Sbjct 669 IVGVPSDNSGLHDLSVLHLDSCTDYNIYGRNGVGIIRKTNSTLLSGLYYTSLSGDLLGF- 727
Query 560 DSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAW 619
++ + ++PC + + G + ++ + + T +T TP +
Sbjct 728 ---KNVSDGVVYSVTPCEVSAQAAVIDGAIVGAMTSINSELLGLTHWTT-------TPNF 777
Query 620 RIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPI----GAGICASYHTVSLLRSTSQKSIV 675
YS N + G + + VD C+ PI G+C + V +
Sbjct 778 YYYSIYNYTNERVRGTVTDSNDVD----CE-PIITYSNIGVCKNGALV----------FI 822
Query 676 AYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLL 735
T S G I+ N + IPTNF+IS+ E + V S+DC+ Y+C ++ C LL
Sbjct 823 NVTHSDGDVQPISTGN--VTIPTNFTISVQVEYIQVYTTPVSIDCSRYVCNGNSRCNKLL 880
Query 736 LQYGSFCTQLNRALSGIAAEQDRNTREVF---------AQVKQMYKTPTL---------- 776
QY S C + +AL+ A ++ + A V+ T L
Sbjct 881 TQYVSACHTIEQALAMGARLENMEIDSMLFVSENALKLASVEAFNSTDNLDPIYREWPNI 940
Query 777 --KYFGGFNFSQILPDPLKPTK-RSFIEDLLFNKVTLADAGFMKQ-YGECLGDINARDLI 832
+ GG ILP K RS IEDLLF+KV + G + + Y C G + DL+
Sbjct 941 GGSWLGGL--KDILPSHNSKRKYRSAIEDLLFDKVVTSGLGTVDEDYKRCTGGYDIADLV 998
Query 833 CAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGA--GAALQIPFAMQMAYRFNG 890
CAQ +NG+ VLP + DD +A YTA+L G T GA G A+ IPFA+ + R N
Sbjct 999 CAQYYNGIMVLPGVANDDKMAMYTASLAGGI-----TLGALGGGAVSIPFAVAVQARLNY 1053
Query 891 IGVTQNVLYENQKQIANQFNKAISQIQES--------------LTTTSTALGKLQDVVNQ 936
+ + +VL +NQ+ +AN FN+AI I ++ L T + AL K+QDVVN
Sbjct 1054 VALQTDVLNKNQQILANAFNQAIGNITQAFGNVNDAIHQTSKGLATVAKALAKVQDVVNT 1113
Query 937 NAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIR 996
QAL+ L QL +NF AISS ++DI +RLD++ A+ Q+DRLITGRL +L +V+Q L R
Sbjct 1114 QGQALSHLTVQLQNNFQAISSSISDIYNRLDELSADAQVDRLITGRLTALNAFVSQTLTR 1173
Query 997 AAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERN 1056
AE+RAS LA K++ECV QS+R FCG G HL S AAP+G++F H +P+
Sbjct 1174 QAEVRASRQLAKDKVNECVRSQSQRFGFCGNGTHLFSLANAAPNGMIFFHTVLLPTAYET 1233
Query 1057 FTTAPAIC-HEGKAYFP------REGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCD 1109
T IC +G F + +F +++T R + P++ T+ + CD
Sbjct 1234 VTAWSGICASDGNRTFGLVVKDVQLTLFRNLDYKFYLTPRTMYQPRVATSSDFVQIEGCD 1293
Query 1110 VVIGIINNTVYD--PLQPEL----DSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQK 1163
V+ +N TV + + P+ + ++ L+ + N T P++ L DI NA+ +N+
Sbjct 1294 VL--FVNATVIELPSIIPDYIDINQTVQDILENFRPNWTVPELPL-DI--FNATYLNLTG 1348
Query 1164 EIDRLN-----------EVA---KNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAI 1209
EI+ L E+A N+N +L++L+ L + E Y+KWPWYVWL + GL+ I
Sbjct 1349 EINDLEFRSEKLHNTTLELATLIDNINNTLVNLEWLNRIETYVKWPWYVWL--LIGLVVI 1406
Query 1210 VMVTILL 1216
+ +LL
Sbjct 1407 FCIPLLL 1413
>sp|P18450|SPIKE_CVPFS Spike glycoprotein OS=Porcine transmissible
gastroenteritis coronavirus (strain FS772/70) OX=11150
GN=S PE=3 SV=2
Length=1449
Score = 323 bits (829), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 238/767 (31%), Positives = 372/767 (49%), Gaps = 113/767 (15%)
Query 522 NQCVNFNFNGLTGTGVLTPSSKRFQP---FQQFGRDVSDFTDSVRDPKTSEILDISPCSF 578
+ C ++N G +G G++ +++ + D+ F ++ I ++PC
Sbjct 684 DSCTDYNIYGRSGVGIIRQTNRTLLSGLYYTSLSGDLLGF----KNVSDGVIYSVTPCDV 739
Query 579 GGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIG 638
+ + GT + ++ + + T +T TP + YS N G I
Sbjct 740 SAQAAVIDGTIVGAITSINSELLGLTHWTT-------TPNFYYYSIYNYTNDMTRGTAID 792
Query 639 AEHVDTSYECDIPI---GAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIA 695
+ VD C+ I G+C + V + T S G I+ N +
Sbjct 793 SNDVD----CEPVITYSNIGVCKNGALV----------FINVTHSDGDVQPISTGN--VT 836
Query 696 IPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALS----- 750
IPTNF+IS+ E + V S+DC+ Y+C + C LL QY S C + +AL+
Sbjct 837 IPTNFTISVQVEYIQVYTTPVSIDCSRYVCNGNPRCNKLLTQYVSACQTIEQALAVGARL 896
Query 751 ----------------GIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILP-DPLK 793
+A+ + N+ E + + + + G + ILP D K
Sbjct 897 ENMEVDSMLFVSENALKLASVEAFNSSETLDPIYKEWPNIGGSWLEGLKY--ILPSDNSK 954
Query 794 PTKRSFIEDLLFNKVTLADAGFMKQ-YGECLGDINARDLICAQKFNGLTVLPPLLTDDMI 852
RS IEDLLF+KV + G + + Y C G + DL+CAQ +NG+ VLP + D +
Sbjct 955 RKYRSAIEDLLFSKVVTSGLGTVDEDYKRCTGGYDIADLVCAQYYNGIMVLPGVANADKM 1014
Query 853 AAYTAALVSGTATAGWTFGA--GAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFN 910
YTA+L G T GA G A+ IPFA+ + R N + + +VL +NQ+ +A+ FN
Sbjct 1015 TMYTASLAGGI-----TLGALGGGAVAIPFAVAVQARLNYVALQTDVLNKNQQILASAFN 1069
Query 911 KAISQIQES--------------LTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAIS 956
+AI I +S L T + AL K+QDVVN QAL+ L QL +NF AIS
Sbjct 1070 QAIGNITQSFGKVNDAIHQTSRGLATVAKALAKVQDVVNTQGQALSHLTVQLQNNFQAIS 1129
Query 957 SVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVL 1016
S ++DI +RLD++ A+ +DRLITGRL +L +V+Q L R AE+RAS LA K++ECV
Sbjct 1130 SSISDIYNRLDELSADAHVDRLITGRLTALNAFVSQTLTRQAEVRASRQLAKDKVNECVR 1189
Query 1017 GQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICH-EGKAYFP--- 1072
QS+R FCG G HL S AAP+G++F H +P+ T IC +G F
Sbjct 1190 SQSQRFGFCGNGTHLFSLANAAPNGMIFFHAVLLPTAYETVTAWAGICALDGDRTFGLVV 1249
Query 1073 ---REGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYD--PLQPEL 1127
+ +F +++T R + P++ T+ + CDV+ +N T+ D + P+
Sbjct 1250 KDVQLTLFRNLDDKFYLTPRTMYQPRVATSSDFVQIEGCDVL--FVNATLSDLPSIIPDY 1307
Query 1128 ----DSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLN-----------EVA 1172
+ ++ L+ + N T P++ DI NA+ +N+ EID L E+A
Sbjct 1308 IDINQTVQDILENFRPNWTVPELTF-DI--FNATYLNLTGEIDDLEFRSEKLHNTTVELA 1364
Query 1173 ---KNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILL 1216
N+N +L++L+ L + E Y+KWPWYVWL + GL+ I + +LL
Sbjct 1365 ILIDNINNTLVNLEWLNRIETYVKWPWYVWL--LIGLVVIFCIPLLL 1409
>sp|P36300|SPIKE_CVCAI Spike glycoprotein OS=Canine coronavirus
(strain Insavc-1) OX=36391 GN=S PE=1 SV=1
Length=1451
Score = 320 bits (820), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 241/787 (31%), Positives = 378/787 (48%), Gaps = 116/787 (15%)
Query 503 LLNAPATVCGPKLSTDLIKNQCVNFNFNGLTGTGVLTPSSKRFQP---FQQFGRDVSDFT 559
++ P+ G + L + C ++N G TG G++ ++ + D+ F
Sbjct 668 IVGVPSDNSGLHDLSVLHLDSCTDYNIYGRTGVGIIRKTNSTLLSGLYYTSLSGDLLGF- 726
Query 560 DSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAW 619
++ + ++PC + + G + ++ + + T +T TP +
Sbjct 727 ---KNVSDGVVYSVTPCDVSAQAAVIDGAIVGAMTSINSELLGLTHWTT-------TPNF 776
Query 620 RIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPI----GAGICASYHTVSLLRSTSQKSIV 675
YS N G I D +C+ PI G+C + V +
Sbjct 777 YYYSIYNYTNVMNRGTAI-----DNDIDCE-PIITYSNIGVCKNGALV----------FI 820
Query 676 AYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLL 735
T S G I+ N + IPTNF+IS+ E + V S+DC Y+C + C LL
Sbjct 821 NVTHSDGDVQPISTGN--VTIPTNFTISVQVEYIQVYTTPVSIDCARYVCNGNPRCNKLL 878
Query 736 LQYGSFCTQLNRALS---------------------GIAAEQDRNTREVFAQVKQMYKTP 774
QY S C + +AL+ +A+ + N+ E + + +
Sbjct 879 TQYVSACQTIEQALAMGARLENMEIDSMLFVSENALKLASVEAFNSTENLDPIYKEWPNI 938
Query 775 TLKYFGGFNFSQILPDPLKPTK-RSFIEDLLFNKVTLADAGFMKQ-YGECLGDINARDLI 832
+ GG ILP K RS IEDLLF+KV + G + + Y G + DL+
Sbjct 939 GGSWLGGL--KDILPSHNSKRKYRSAIEDLLFDKVVTSGLGTVDEDYKRSAGGYDIADLV 996
Query 833 CAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGA--GAALQIPFAMQMAYRFNG 890
CA+ +NG+ VLP + DD + YTA+L T G T GA G A+ IPFA+ + R N
Sbjct 997 CARYYNGIMVLPGVANDDKMTMYTASL-----TGGITLGALSGGAVAIPFAVAVQARLNY 1051
Query 891 IGVTQNVLYENQKQIANQFNKAISQIQES--------------LTTTSTALGKLQDVVNQ 936
+ + +VL +NQ+ +AN FN+AI I ++ L T + AL K+QDVVN
Sbjct 1052 VALQTDVLNKNQQILANAFNQAIGNITQAFGKVNDAIHQTSKGLATVAKALAKVQDVVNT 1111
Query 937 NAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIR 996
QAL+ L QL +NF AISS ++DI +RLD++ A+ Q+DRLITGRL +L +V+Q L R
Sbjct 1112 QGQALSHLTVQLQNNFQAISSSISDIYNRLDELSADAQVDRLITGRLTALNAFVSQTLTR 1171
Query 997 AAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERN 1056
AE+RAS LA K++ECV QS+R FCG G HL S AAP+G++F H +P+
Sbjct 1172 QAEVRASRQLAKDKVNECVRSQSQRFGFCGNGTHLFSLANAAPNGMIFFHTVLLPTAYET 1231
Query 1057 FTTAPAIC-HEGKAYFP------REGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCD 1109
T IC +G F + +F +++T R + P++ T+ + CD
Sbjct 1232 VTAWSGICASDGSRTFGLVVEDVQLTLFRNLDEKFYLTPRTMYQPRVATSSDFVQIEGCD 1291
Query 1110 VVIGIINNTVYD--PLQPEL----DSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQK 1163
V+ +N TV + + P+ + ++ L+ + N T P++ L DI +A+ +N+
Sbjct 1292 VL--FVNGTVIELPSIIPDYIDINQTVQDILENFRPNWTVPELPL-DI--FHATYLNLTG 1346
Query 1164 EIDRLN-----------EVA---KNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAI 1209
EI+ L E+A N+N +L++L+ L + E Y+KWPWYVWL + GL+ I
Sbjct 1347 EINDLEFRSEKLHNTTVELAILIDNINNTLVNLEWLNRIETYVKWPWYVWL--LIGLVVI 1404
Query 1210 VMVTILL 1216
+ ILL
Sbjct 1405 FCIPILL 1411
>sp|Q91AV1|SPIKE_PEDV7 Spike glycoprotein OS=Porcine epidemic
diarrhea virus (strain CV777) OX=229032 GN=S PE=1 SV=1
Length=1383
Score = 310 bits (793), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 194/554 (35%), Positives = 289/554 (52%), Gaps = 52/554 (9%)
Query 694 IAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIA 753
I+IPTNFS+SI TE + + SVDC Y+C ++ C LL QY + C + AL A
Sbjct 779 ISIPTNFSMSIRTEYLQLYNTPVSVDCATYVCNGNSRCKQLLTQYTAACKTIESALQLSA 838
Query 754 AEQDRNTREVFAQVKQMYKTPTLKYFGG--FNFSQILP----DPLKP---TKRSFIEDLL 804
+ + ++ + T+ F G +NF+ +L DP KRS IEDLL
Sbjct 839 RLESVEVNSMLTISEEALQLATISSFNGDGYNFTNVLGASVYDPASGRVVQKRSVIEDLL 898
Query 805 FNKVTLADAGFMKQ-YGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGT 863
FNKV G + + Y C + DL+CAQ ++G+ VLP ++ + + Y+A+L+ G
Sbjct 899 FNKVVTNGLGTVDEDYKRCSNGRSVADLVCAQYYSGVMVLPGVVDAEKLHMYSASLIGGM 958
Query 864 ATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFN------------- 910
A G T AA +PF+ + R N + + +VL NQ+ +A FN
Sbjct 959 ALGGIT----AAAALPFSYAVQARLNYLALQTDVLQRNQQLLAESFNSAIGNITSAFESV 1014
Query 911 -KAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKV 969
+AISQ + L T + AL K+Q+VVN ALN L QL NF AISS ++DI SRLD +
Sbjct 1015 KEAISQTSKGLNTVAHALTKVQEVVNSQGSALNQLTVQLQHNFQAISSSIDDIYSRLDIL 1074
Query 970 EAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFC-GKG 1028
A+VQ+DRLITGRL +L +V Q L + E++AS LA K++ECV QS+R FC G G
Sbjct 1075 SADVQVDRLITGRLSALNAFVAQTLTKYTEVQASRKLAQQKVNECVKSQSQRYGFCGGDG 1134
Query 1029 YHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGK-AYFPRE-GVFVF------- 1079
H+ S QAAP G++FLH VP N +C G+ A RE G+ +F
Sbjct 1135 EHIFSLVQAAPQGLLFLHTVLVPGDFVNVLAIAGLCVNGEIALTLREPGLVLFTHELQTY 1194
Query 1080 NGTSWFITQRNFFSPQIITTDNTFVSGNCDVV-IGIINNTVYDPLQPELDSFK--EELDK 1136
T +F++ R F P+ T + +C V + + ++ + D + +D K +E+
Sbjct 1195 TATEYFVSSRRMFEPRKPTVSDFVQIESCVVTYVNLTSDQLPDVIPDYIDVNKTLDEILA 1254
Query 1137 YFKNHTSPDVDL-----------GDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQEL 1185
N T P + L G+I+ + +++ + L + N+N +L+DL+ L
Sbjct 1255 SLPNRTGPSLPLDVFNATYLNLTGEIADLEQRSESLRNTTEELRSLINNINNTLVDLEWL 1314
Query 1186 GKYEQYIKWPWYVW 1199
+ E YIKWPW+VW
Sbjct 1315 NRVETYIKWPWWVW 1328
>sp|B8F3P6|MUKF_GLAP5 Chromosome partition protein MukF OS=Glaesserella
parasuis serovar 5 (strain SH0165) OX=557723 GN=mukF
PE=3 SV=1
Length=443
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 64/122 (52%), Gaps = 15/122 (12%)
Query 879 PFAMQMAYRFNGIGVTQNVLYENQKQIANQ--------FNKAISQIQESLTTTSTALGKL 930
P +A F+ I ++Q ++ ENQ+QI + +++AI+ Q+ L TS L +L
Sbjct 160 PLKFSVAEIFDSIDLSQRMMDENQQQIRERIAMLLSQNWHEAIATCQQLLDETSGNLREL 219
Query 931 QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQ--IDRLITGRLQSLQT 988
QDV+N + L + + ++ S + D L +D++ +Q +DR+I+ Q++
Sbjct 220 QDVLNASGDKLQSQLLRIQSCL-----IGRDDLDFVDQLIVNLQNKLDRIISWGQQAIDL 274
Query 989 YV 990
++
Sbjct 275 WI 276
>sp|A5UEK6|MUKF_HAEIG Chromosome partition protein MukF OS=Haemophilus
influenzae (strain PittGG) OX=374931 GN=mukF PE=3 SV=1
Length=444
Score = 38.9 bits (89), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/105 (26%), Positives = 49/105 (47%), Gaps = 14/105 (13%)
Query 879 PFAMQMAYRFNGIGVTQNVLYENQKQIANQ--------FNKAISQIQESLTTTSTALGKL 930
P +A F+ I ++Q ++ ENQ+ I N+ + AIS + L TS L +L
Sbjct 163 PLKYSVAEIFDSIDLSQRIMDENQQSIKNEIAELLTKDWQAAISSCERLLDETSGNLREL 222
Query 931 QDVVNQNAQALNTLVKQLS------SNFGAISSVLNDILSRLDKV 969
QD +N L + ++ + I ++ D+ S+LD++
Sbjct 223 QDTLNAAGDKLQAQLLRIQDCVIGRDDLYFIDQLITDLQSKLDRI 267
>sp|Q7VL94|MUKF_HAEDU Chromosome partition protein MukF OS=Haemophilus
ducreyi (strain 35000HP / ATCC 700724) OX=233412 GN=mukF
PE=1 SV=1
Length=443
Score = 37.7 bits (86), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 26/105 (25%), Positives = 52/105 (50%), Gaps = 14/105 (13%)
Query 879 PFAMQMAYRFNGIGVTQNVLYENQKQIANQ--------FNKAISQIQESLTTTSTALGKL 930
P +A F+ I ++Q ++ ENQ QI Q +++AI Q+ L TS L +L
Sbjct 160 PLKFSVAEIFDSIDLSQRMMDENQHQIREQIAGLLSQNWHEAIINCQQLLDETSINLREL 219
Query 931 QDVVNQNAQALNTLVKQLSS------NFGAISSVLNDILSRLDKV 969
QD +N L + + ++ S + + ++ ++ ++LD++
Sbjct 220 QDTLNAAGDKLQSQLLRIQSCLISRDDLAFVDQLIVNLQNKLDRI 264
>sp|Q38WX8|TYSY_LATSS Thymidylate synthase OS=Latilactobacillus
sakei subsp. sakei (strain 23K) OX=314315 GN=thyA PE=3 SV=1
Length=316
Score = 37.4 bits (85), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 23/39 (59%), Gaps = 1/39 (3%)
Query 804 LFNKVTLADAGFMKQYGECLGDINARDLICAQKFNGLTV 842
LFN LAD GF KQYGE LGDI + Q +G T+
Sbjct 124 LFNDRILADEGFAKQYGE-LGDIYGKQWRAWQTRSGETI 161
>sp|P45185|MUKF_HAEIN Chromosome partition protein MukF OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 /
Rd) OX=71421 GN=mukF PE=3 SV=2
Length=444
Score = 37.7 bits (86), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 26/105 (25%), Positives = 49/105 (47%), Gaps = 14/105 (13%)
Query 879 PFAMQMAYRFNGIGVTQNVLYENQKQIANQ--------FNKAISQIQESLTTTSTALGKL 930
P +A F+ I ++Q ++ ENQ+ I ++ + AIS + L TS L +L
Sbjct 163 PLKYSVAEIFDSIDLSQRIMDENQQSIKDEIAELLTKDWQAAISSCERLLDETSGNLREL 222
Query 931 QDVVNQNAQALNTLVKQLS------SNFGAISSVLNDILSRLDKV 969
QD +N L + ++ + I ++ D+ S+LD++
Sbjct 223 QDTLNAAGDKLQAQLLRIQDCVIGRDDLYFIDQLITDLQSKLDRI 267
>sp|A5UBY0|MUKF_HAEIE Chromosome partition protein MukF OS=Haemophilus
influenzae (strain PittEE) OX=374930 GN=mukF PE=3 SV=1
Length=444
Score = 37.4 bits (85), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 26/105 (25%), Positives = 49/105 (47%), Gaps = 14/105 (13%)
Query 879 PFAMQMAYRFNGIGVTQNVLYENQKQIANQ--------FNKAISQIQESLTTTSTALGKL 930
P +A F+ I ++Q ++ ENQ+ I ++ + AIS + L TS L +L
Sbjct 163 PLKYSVAEIFDSIDLSQRIMDENQQSIKDEIAELLTKDWQAAISSCERLLDETSGNLREL 222
Query 931 QDVVNQNAQALNTLVKQLS------SNFGAISSVLNDILSRLDKV 969
QD +N L + ++ + I ++ D+ S+LD++
Sbjct 223 QDTLNAAGDKLQAQLLRIQDCVIGRDDLYFIDQLITDLQSKLDRI 267
>sp|O30867|MUKF_HAEAE Chromosome partition protein MukF OS=Haemophilus
aegyptius OX=197575 GN=mukF PE=3 SV=1
Length=443
Score = 37.4 bits (85), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 26/105 (25%), Positives = 49/105 (47%), Gaps = 14/105 (13%)
Query 879 PFAMQMAYRFNGIGVTQNVLYENQKQIANQ--------FNKAISQIQESLTTTSTALGKL 930
P +A F+ I ++Q ++ ENQ+ I ++ + AIS + L TS L +L
Sbjct 162 PLKYSVAEIFDSIDLSQRIMDENQQSIKDEIAELLTKDWQAAISSCERLLDETSGNLREL 221
Query 931 QDVVNQNAQALNTLVKQLS------SNFGAISSVLNDILSRLDKV 969
QD +N L + ++ + I ++ D+ S+LD++
Sbjct 222 QDTLNAAGDKLQAQLLRIQDCVIGRDDLYFIDQLITDLQSKLDRI 266
>sp|B7UN08|MUKF_ECO27 Chromosome partition protein MukF OS=Escherichia
coli O127:H6 (strain E2348/69 / EPEC) OX=574521 GN=mukF
PE=3 SV=1
Length=440
Score = 37.0 bits (84), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 62/122 (51%), Gaps = 15/122 (12%)
Query 879 PFAMQMAYRFNGIGVTQNVLYENQKQ----IANQFNK----AISQIQESLTTTSTALGKL 930
P +A F+ I +TQ ++ E Q+Q IA NK AIS + L+ TS L +L
Sbjct 159 PLKYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLREL 218
Query 931 QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQ--IDRLITGRLQSLQT 988
QD + L + ++ +++++D L +D++ ++Q +DR+I+ QS+
Sbjct 219 QDTLEAAGDKLQANLLRIQD-----ATMIHDDLHFVDRLVFDLQSKLDRIISWGQQSIDL 273
Query 989 YV 990
++
Sbjct 274 WI 275
>sp|B5R8K9|MUKF_SALG2 Chromosome partition protein MukF OS=Salmonella
gallinarum (strain 287/91 / NCTC 13346) OX=550538 GN=mukF
PE=3 SV=1
Length=440
Score = 37.0 bits (84), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 15/122 (12%)
Query 879 PFAMQMAYRFNGIGVTQNVLYENQKQ----IANQFNK----AISQIQESLTTTSTALGKL 930
P +A F+ I +TQ ++ E Q+Q IA NK AIS + L+ TS L +L
Sbjct 159 PLKYSVAEIFDSIDLTQRIMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLREL 218
Query 931 QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQ--IDRLITGRLQSLQT 988
QD + L + ++ +++ +D L +D++ ++Q +DR+I+ QS+
Sbjct 219 QDTLEAAGDKLQANLLRIQD-----ATMTHDDLHVVDRLVFDLQSKLDRIISWGQQSIDL 273
Query 989 YV 990
++
Sbjct 274 WI 275
>sp|Q6GH02|TELL_STAAR TelA-like protein SAR1418 OS=Staphylococcus
aureus (strain MRSA252) OX=282458 GN=SAR1418 PE=3 SV=1
Length=378
Score = 37.0 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 32/99 (32%), Positives = 50/99 (51%), Gaps = 12/99 (12%)
Query 902 QKQIANQFNKAISQIQESLT-----TTSTALGKLQDVVNQNAQALNT-LVKQLSSNFGAI 955
QKQ++ ++ + ++Q T S + KL+ V N LNT L F
Sbjct 63 QKQMSQFSHQMLDEVQSKDVGPIGDTLSDLMSKLKSV---NPNELNTDKPSMLKRIFSRA 119
Query 956 SSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQL 994
S +N+I SR+ V A Q+DR IT +LQ QT++T+ +
Sbjct 120 KSSINEIFSRMQSVSA--QVDR-ITIQLQKHQTHLTRDI 155
>sp|P60108|TELL_STAAN TelA-like protein SA1238 OS=Staphylococcus
aureus (strain N315) OX=158879 GN=SA1238 PE=1 SV=1
Length=378
Score = 37.0 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 32/99 (32%), Positives = 50/99 (51%), Gaps = 12/99 (12%)
Query 902 QKQIANQFNKAISQIQESLT-----TTSTALGKLQDVVNQNAQALNT-LVKQLSSNFGAI 955
QKQ++ ++ + ++Q T S + KL+ V N LNT L F
Sbjct 63 QKQMSQFSHQMLDEVQSKDVGPIGDTLSDLMSKLKSV---NPNELNTDKPSMLKRIFSRA 119
Query 956 SSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQL 994
S +N+I SR+ V A Q+DR IT +LQ QT++T+ +
Sbjct 120 KSSINEIFSRMQSVSA--QVDR-ITIQLQKHQTHLTRDI 155
>sp|P60107|TELL_STAAM TelA-like protein SAV1406 OS=Staphylococcus
aureus (strain Mu50 / ATCC 700699) OX=158878 GN=SAV1406
PE=3 SV=1
Length=378
Score = 37.0 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 32/99 (32%), Positives = 50/99 (51%), Gaps = 12/99 (12%)
Query 902 QKQIANQFNKAISQIQESLT-----TTSTALGKLQDVVNQNAQALNT-LVKQLSSNFGAI 955
QKQ++ ++ + ++Q T S + KL+ V N LNT L F
Sbjct 63 QKQMSQFSHQMLDEVQSKDVGPIGDTLSDLMSKLKSV---NPNELNTDKPSMLKRIFSRA 119
Query 956 SSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQL 994
S +N+I SR+ V A Q+DR IT +LQ QT++T+ +
Sbjct 120 KSSINEIFSRMQSVSA--QVDR-ITIQLQKHQTHLTRDI 155
>sp|Q5HG14|TELL_STAAC TelA-like protein SACOL1441 OS=Staphylococcus
aureus (strain COL) OX=93062 GN=SACOL1441 PE=3 SV=1
Length=378
Score = 37.0 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 32/99 (32%), Positives = 50/99 (51%), Gaps = 12/99 (12%)
Query 902 QKQIANQFNKAISQIQESLT-----TTSTALGKLQDVVNQNAQALNT-LVKQLSSNFGAI 955
QKQ++ ++ + ++Q T S + KL+ V N LNT L F
Sbjct 63 QKQMSQFSHQMLDEVQSKDVGPIGDTLSDLMSKLKSV---NPNELNTDKPSMLKRIFSRA 119
Query 956 SSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQL 994
S +N+I SR+ V A Q+DR IT +LQ QT++T+ +
Sbjct 120 KSSINEIFSRMQSVSA--QVDR-ITIQLQKHQTHLTRDI 155
>sp|Q2YY12|TELL_STAAB TelA-like protein SAB1262 OS=Staphylococcus
aureus (strain bovine RF122 / ET3-1) OX=273036 GN=SAB1262
PE=3 SV=1
Length=378
Score = 37.0 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 32/99 (32%), Positives = 50/99 (51%), Gaps = 12/99 (12%)
Query 902 QKQIANQFNKAISQIQESLT-----TTSTALGKLQDVVNQNAQALNT-LVKQLSSNFGAI 955
QKQ++ ++ + ++Q T S + KL+ V N LNT L F
Sbjct 63 QKQMSQFSHQMLDEVQSKDVGPIGDTLSDLMSKLKSV---NPNELNTDKPSMLKRIFSRA 119
Query 956 SSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQL 994
S +N+I SR+ V A Q+DR IT +LQ QT++T+ +
Sbjct 120 KSSINEIFSRMQSVSA--QVDR-ITIQLQKHQTHLTRDI 155
>sp|Q2FYM7|TELL_STAA8 TelA-like protein SAOUHSC_01408 OS=Staphylococcus
aureus (strain NCTC 8325 / PS 47) OX=93061 GN=SAOUHSC_01408
PE=3 SV=1
Length=378
Score = 37.0 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 32/99 (32%), Positives = 50/99 (51%), Gaps = 12/99 (12%)
Query 902 QKQIANQFNKAISQIQESLT-----TTSTALGKLQDVVNQNAQALNT-LVKQLSSNFGAI 955
QKQ++ ++ + ++Q T S + KL+ V N LNT L F
Sbjct 63 QKQMSQFSHQMLDEVQSKDVGPIGDTLSDLMSKLKSV---NPNELNTDKPSMLKRIFSRA 119
Query 956 SSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQL 994
S +N+I SR+ V A Q+DR IT +LQ QT++T+ +
Sbjct 120 KSSINEIFSRMQSVSA--QVDR-ITIQLQKHQTHLTRDI 155
>sp|Q2FH32|TELL_STAA3 TelA-like protein SAUSA300_1299 OS=Staphylococcus
aureus (strain USA300) OX=367830 GN=SAUSA300_1299
PE=3 SV=1
Length=378
Score = 37.0 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 32/99 (32%), Positives = 50/99 (51%), Gaps = 12/99 (12%)
Query 902 QKQIANQFNKAISQIQESLT-----TTSTALGKLQDVVNQNAQALNT-LVKQLSSNFGAI 955
QKQ++ ++ + ++Q T S + KL+ V N LNT L F
Sbjct 63 QKQMSQFSHQMLDEVQSKDVGPIGDTLSDLMSKLKSV---NPNELNTDKPSMLKRIFSRA 119
Query 956 SSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQL 994
S +N+I SR+ V A Q+DR IT +LQ QT++T+ +
Sbjct 120 KSSINEIFSRMQSVSA--QVDR-ITIQLQKHQTHLTRDI 155
>sp|A8AIF7|MUKF_CITK8 Chromosome partition protein MukF OS=Citrobacter
koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
OX=290338 GN=mukF PE=3 SV=1
Length=440
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/154 (25%), Positives = 72/154 (47%), Gaps = 20/154 (13%)
Query 879 PFAMQMAYRFNGIGVTQNVLYENQKQ----IANQFNK----AISQIQESLTTTSTALGKL 930
P +A F+ I +TQ ++ E Q+Q IA NK AIS + L+ TS L +L
Sbjct 159 PLKYSVAEIFDSIDLTQRIMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLREL 218
Query 931 QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQ--IDRLITGRLQSLQT 988
QD + L + ++ +++ +D L +D++ ++Q +DR+I+ QS+
Sbjct 219 QDTLEAAGDKLQANLLRIQD-----ATMAHDDLHFVDRLVFDLQSKLDRIISWGQQSIDL 273
Query 989 YV-----TQQLIRAAEIRASANLAATKMSECVLG 1017
++ + IR A + A ++ + + G
Sbjct 274 WIGYDRHVHKFIRTAIDMDKNRVFAQRLRQSIQG 307
>sp|Q8NWS1|TELL_STAAW TelA-like protein MW1294 OS=Staphylococcus
aureus (strain MW2) OX=196620 GN=MW1294 PE=3 SV=1
Length=378
Score = 36.6 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 32/99 (32%), Positives = 50/99 (51%), Gaps = 12/99 (12%)
Query 902 QKQIANQFNKAISQIQESLT-----TTSTALGKLQDVVNQNAQALNT-LVKQLSSNFGAI 955
QKQ++ ++ + ++Q T S + KL+ V N LNT L F
Sbjct 63 QKQMSQFSHQMLDEVQSKDVGPIGDTLSDLISKLKSV---NPNELNTDKPSMLKRIFSRA 119
Query 956 SSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQL 994
S +N+I SR+ V A Q+DR IT +LQ QT++T+ +
Sbjct 120 KSSINEIFSRMQSVSA--QVDR-ITIQLQKHQTHLTRDI 155
>sp|Q6G9F5|TELL_STAAS TelA-like protein SAS1347 OS=Staphylococcus
aureus (strain MSSA476) OX=282459 GN=SAS1347 PE=3 SV=1
Length=378
Score = 36.6 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 32/99 (32%), Positives = 50/99 (51%), Gaps = 12/99 (12%)
Query 902 QKQIANQFNKAISQIQESLT-----TTSTALGKLQDVVNQNAQALNT-LVKQLSSNFGAI 955
QKQ++ ++ + ++Q T S + KL+ V N LNT L F
Sbjct 63 QKQMSQFSHQMLDEVQSKDVGPIGDTLSDLISKLKSV---NPNELNTDKPSMLKRIFSRA 119
Query 956 SSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQL 994
S +N+I SR+ V A Q+DR IT +LQ QT++T+ +
Sbjct 120 KSSINEIFSRMQSVSA--QVDR-ITIQLQKHQTHLTRDI 155
>sp|Q8N9W4|GG6L2_HUMAN Golgin subfamily A member 6-like protein
2 OS=Homo sapiens OX=9606 GN=GOLGA6L2 PE=1 SV=3
Length=909
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 54/116 (47%), Gaps = 9/116 (8%)
Query 640 EHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTN 699
E S++ + I A HT+ +L T QK+ + + D++ + + + P++
Sbjct 81 EEKKASHQHQEALRREIEAQDHTIRIL--TCQKTELETALYYSQDAARKFEDGNLGTPSS 138
Query 700 FSISITT--EVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIA 753
F+++++ P+ TS+ I G+S + A L F +L RALS ++
Sbjct 139 FNLALSQAFRGSPLGCVSTSL-----IPGESKDLAGRLHHSWHFAGELQRALSAVS 189
>sp|Q8ZQB7|MUKF_SALTY Chromosome partition protein MukF OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287
GN=mukF PE=3 SV=1
Length=440
Score = 36.6 bits (83), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 15/122 (12%)
Query 879 PFAMQMAYRFNGIGVTQNVLYENQKQ----IANQFNK----AISQIQESLTTTSTALGKL 930
P +A F+ I +TQ ++ E Q+Q IA NK AIS + L+ TS L +L
Sbjct 159 PLKYSVAEIFDSIDLTQRIMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLREL 218
Query 931 QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQ--IDRLITGRLQSLQT 988
QD + L + ++ +++ +D L +D++ ++Q +DR+I+ QS+
Sbjct 219 QDTLEAAGDKLQANLLRIQD-----ATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDL 273
Query 989 YV 990
++
Sbjct 274 WI 275
>sp|B4TRV4|MUKF_SALSV Chromosome partition protein MukF OS=Salmonella
schwarzengrund (strain CVM19633) OX=439843 GN=mukF PE=3
SV=1
Length=440
Score = 36.6 bits (83), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 15/122 (12%)
Query 879 PFAMQMAYRFNGIGVTQNVLYENQKQ----IANQFNK----AISQIQESLTTTSTALGKL 930
P +A F+ I +TQ ++ E Q+Q IA NK AIS + L+ TS L +L
Sbjct 159 PLKYSVAEIFDSIDLTQRIMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLREL 218
Query 931 QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQ--IDRLITGRLQSLQT 988
QD + L + ++ +++ +D L +D++ ++Q +DR+I+ QS+
Sbjct 219 QDTLEAAGDKLQANLLRIQD-----ATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDL 273
Query 989 YV 990
++
Sbjct 274 WI 275
>sp|B5BBN6|MUKF_SALPK Chromosome partition protein MukF OS=Salmonella
paratyphi A (strain AKU_12601) OX=554290 GN=mukF PE=3
SV=1
Length=440
Score = 36.6 bits (83), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 15/122 (12%)
Query 879 PFAMQMAYRFNGIGVTQNVLYENQKQ----IANQFNK----AISQIQESLTTTSTALGKL 930
P +A F+ I +TQ ++ E Q+Q IA NK AIS + L+ TS L +L
Sbjct 159 PLKYSVAEIFDSIDLTQRIMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLREL 218
Query 931 QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQ--IDRLITGRLQSLQT 988
QD + L + ++ +++ +D L +D++ ++Q +DR+I+ QS+
Sbjct 219 QDTLEAAGDKLQANLLRIQD-----ATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDL 273
Query 989 YV 990
++
Sbjct 274 WI 275
>sp|C0PXV9|MUKF_SALPC Chromosome partition protein MukF OS=Salmonella
paratyphi C (strain RKS4594) OX=476213 GN=mukF PE=3
SV=1
Length=440
Score = 36.6 bits (83), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 15/122 (12%)
Query 879 PFAMQMAYRFNGIGVTQNVLYENQKQ----IANQFNK----AISQIQESLTTTSTALGKL 930
P +A F+ I +TQ ++ E Q+Q IA NK AIS + L+ TS L +L
Sbjct 159 PLKYSVAEIFDSIDLTQRIMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLREL 218
Query 931 QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQ--IDRLITGRLQSLQT 988
QD + L + ++ +++ +D L +D++ ++Q +DR+I+ QS+
Sbjct 219 QDTLEAAGDKLQANLLRIQD-----ATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDL 273
Query 989 YV 990
++
Sbjct 274 WI 275
>sp|Q5PGF9|MUKF_SALPA Chromosome partition protein MukF OS=Salmonella
paratyphi A (strain ATCC 9150 / SARB42) OX=295319 GN=mukF
PE=3 SV=1
Length=440
Score = 36.6 bits (83), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 15/122 (12%)
Query 879 PFAMQMAYRFNGIGVTQNVLYENQKQ----IANQFNK----AISQIQESLTTTSTALGKL 930
P +A F+ I +TQ ++ E Q+Q IA NK AIS + L+ TS L +L
Sbjct 159 PLKYSVAEIFDSIDLTQRIMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLREL 218
Query 931 QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQ--IDRLITGRLQSLQT 988
QD + L + ++ +++ +D L +D++ ++Q +DR+I+ QS+
Sbjct 219 QDTLEAAGDKLQANLLRIQD-----ATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDL 273
Query 989 YV 990
++
Sbjct 274 WI 275
>sp|B4T156|MUKF_SALNS Chromosome partition protein MukF OS=Salmonella
newport (strain SL254) OX=423368 GN=mukF PE=3 SV=1
Length=440
Score = 36.6 bits (83), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 15/122 (12%)
Query 879 PFAMQMAYRFNGIGVTQNVLYENQKQ----IANQFNK----AISQIQESLTTTSTALGKL 930
P +A F+ I +TQ ++ E Q+Q IA NK AIS + L+ TS L +L
Sbjct 159 PLKYSVAEIFDSIDLTQRIMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLREL 218
Query 931 QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQ--IDRLITGRLQSLQT 988
QD + L + ++ +++ +D L +D++ ++Q +DR+I+ QS+
Sbjct 219 QDTLEAAGDKLQANLLRIQD-----ATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDL 273
Query 989 YV 990
++
Sbjct 274 WI 275
>sp|B4TDQ9|MUKF_SALHS Chromosome partition protein MukF OS=Salmonella
heidelberg (strain SL476) OX=454169 GN=mukF PE=3 SV=1
Length=440
Score = 36.6 bits (83), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 15/122 (12%)
Query 879 PFAMQMAYRFNGIGVTQNVLYENQKQ----IANQFNK----AISQIQESLTTTSTALGKL 930
P +A F+ I +TQ ++ E Q+Q IA NK AIS + L+ TS L +L
Sbjct 159 PLKYSVAEIFDSIDLTQRIMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLREL 218
Query 931 QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQ--IDRLITGRLQSLQT 988
QD + L + ++ +++ +D L +D++ ++Q +DR+I+ QS+
Sbjct 219 QDTLEAAGDKLQANLLRIQD-----ATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDL 273
Query 989 YV 990
++
Sbjct 274 WI 275
>sp|B5QZC6|MUKF_SALEP Chromosome partition protein MukF OS=Salmonella
enteritidis PT4 (strain P125109) OX=550537 GN=mukF PE=3
SV=1
Length=440
Score = 36.6 bits (83), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 15/122 (12%)
Query 879 PFAMQMAYRFNGIGVTQNVLYENQKQ----IANQFNK----AISQIQESLTTTSTALGKL 930
P +A F+ I +TQ ++ E Q+Q IA NK AIS + L+ TS L +L
Sbjct 159 PLKYSVAEIFDSIDLTQRIMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLREL 218
Query 931 QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQ--IDRLITGRLQSLQT 988
QD + L + ++ +++ +D L +D++ ++Q +DR+I+ QS+
Sbjct 219 QDTLEAAGDKLQANLLRIQD-----ATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDL 273
Query 989 YV 990
++
Sbjct 274 WI 275
>sp|B5FQ65|MUKF_SALDC Chromosome partition protein MukF OS=Salmonella
dublin (strain CT_02021853) OX=439851 GN=mukF PE=3 SV=1
Length=440
Score = 36.6 bits (83), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 15/122 (12%)
Query 879 PFAMQMAYRFNGIGVTQNVLYENQKQ----IANQFNK----AISQIQESLTTTSTALGKL 930
P +A F+ I +TQ ++ E Q+Q IA NK AIS + L+ TS L +L
Sbjct 159 PLKYSVAEIFDSIDLTQRIMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLREL 218
Query 931 QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQ--IDRLITGRLQSLQT 988
QD + L + ++ +++ +D L +D++ ++Q +DR+I+ QS+
Sbjct 219 QDTLEAAGDKLQANLLRIQD-----ATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDL 273
Query 989 YV 990
++
Sbjct 274 WI 275
>sp|Q57R05|MUKF_SALCH Chromosome partition protein MukF OS=Salmonella
choleraesuis (strain SC-B67) OX=321314 GN=mukF PE=3
SV=1
Length=440
Score = 36.6 bits (83), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 15/122 (12%)
Query 879 PFAMQMAYRFNGIGVTQNVLYENQKQ----IANQFNK----AISQIQESLTTTSTALGKL 930
P +A F+ I +TQ ++ E Q+Q IA NK AIS + L+ TS L +L
Sbjct 159 PLKYSVAEIFDSIDLTQRIMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLREL 218
Query 931 QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQ--IDRLITGRLQSLQT 988
QD + L + ++ +++ +D L +D++ ++Q +DR+I+ QS+
Sbjct 219 QDTLEAAGDKLQANLLRIQD-----ATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDL 273
Query 989 YV 990
++
Sbjct 274 WI 275
>sp|B5F1S4|MUKF_SALA4 Chromosome partition protein MukF OS=Salmonella
agona (strain SL483) OX=454166 GN=mukF PE=3 SV=1
Length=440
Score = 36.6 bits (83), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 15/122 (12%)
Query 879 PFAMQMAYRFNGIGVTQNVLYENQKQ----IANQFNK----AISQIQESLTTTSTALGKL 930
P +A F+ I +TQ ++ E Q+Q IA NK AIS + L+ TS L +L
Sbjct 159 PLKYSVAEIFDSIDLTQRIMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLREL 218
Query 931 QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQ--IDRLITGRLQSLQT 988
QD + L + ++ +++ +D L +D++ ++Q +DR+I+ QS+
Sbjct 219 QDTLEAAGDKLQANLLRIQD-----ATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDL 273
Query 989 YV 990
++
Sbjct 274 WI 275
>sp|Q8Z7Z7|MUKF_SALTI Chromosome partition protein MukF OS=Salmonella
typhi OX=90370 GN=mukF PE=3 SV=1
Length=440
Score = 36.6 bits (83), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 15/122 (12%)
Query 879 PFAMQMAYRFNGIGVTQNVLYENQKQ----IANQFNK----AISQIQESLTTTSTALGKL 930
P +A F+ I +TQ ++ E Q+Q IA NK AIS + L+ TS L +L
Sbjct 159 PLKYSVAEIFDSIDLTQRIMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLREL 218
Query 931 QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQ--IDRLITGRLQSLQT 988
QD + L + ++ +++ +D L +D++ ++Q +DR+I+ QS+
Sbjct 219 QDTLEAAGDKLQANLLRIQD-----ATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDL 273
Query 989 YV 990
++
Sbjct 274 WI 275
>sp|A9N7T9|MUKF_SALPB Chromosome partition protein MukF OS=Salmonella
paratyphi B (strain ATCC BAA-1250 / SPB7) OX=1016998
GN=mukF PE=3 SV=1
Length=440
Score = 36.6 bits (83), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 15/122 (12%)
Query 879 PFAMQMAYRFNGIGVTQNVLYENQKQ----IANQFNK----AISQIQESLTTTSTALGKL 930
P +A F+ I +TQ ++ E Q+Q IA NK AIS + L+ TS L +L
Sbjct 159 PLKYSVAEIFDSIDLTQRIMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLREL 218
Query 931 QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQ--IDRLITGRLQSLQT 988
QD + L + ++ +++ +D L +D++ ++Q +DR+I+ QS+
Sbjct 219 QDTLEAAGDKLQANLLRIQD-----ATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDL 273
Query 989 YV 990
++
Sbjct 274 WI 275
>sp|A7MZI2|PNP_VIBC1 Polyribonucleotide nucleotidyltransferase
OS=Vibrio campbellii (strain ATCC BAA-1116) OX=2902295 GN=pnp
PE=3 SV=1
Length=710
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/132 (22%), Positives = 61/132 (46%), Gaps = 23/132 (17%)
Query 881 AMQMAYRFNGI--GVTQNVLYENQ---KQIANQFNKAISQIQESLT-------TTSTALG 928
A+QM + GI + Q L + Q K I + ++AIS +E ++ T +
Sbjct 505 ALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDEAISGAREDISEFAPRIHTMKISAE 564
Query 929 KLQDVVNQNAQALNTLVKQLSSNF-----GAIS------SVLNDILSRLDKVEAEVQIDR 977
K++DV+ + + L ++ + G I + + + R++++ AEV++ R
Sbjct 565 KIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAATEGAAAKEAIRRIEEITAEVEVGR 624
Query 978 LITGRLQSLQTY 989
+ TG++ L +
Sbjct 625 IYTGKVARLADF 636
>sp|P48479|NIM1_NEUCR G2-specific protein kinase nim-1 OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) OX=367110 GN=nim-1 PE=2 SV=2
Length=858
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 40/71 (56%), Gaps = 0/71 (0%)
Query 924 STALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRL 983
S L ++ +N+ + L++ + L + +I + ++ L R +V+A ++IDRL+ +
Sbjct 303 SRTLRTKEETLNKRIRELDSKLSALETEKSSIRAEIDASLRREWEVKARLEIDRLVAQEI 362
Query 984 QSLQTYVTQQL 994
+SLQ Q++
Sbjct 363 ESLQQKFEQEV 373
>sp|A9MHW1|MUKF_SALAR Chromosome partition protein MukF OS=Salmonella
arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
OX=41514 GN=mukF PE=3 SV=1
Length=440
Score = 35.8 bits (81), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 15/122 (12%)
Query 879 PFAMQMAYRFNGIGVTQNVLYENQKQ----IANQFNK----AISQIQESLTTTSTALGKL 930
P +A F+ I +TQ ++ E Q+Q IA NK AIS + L+ TS L +L
Sbjct 159 PLKYSVAEIFDSIDLTQRIMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLREL 218
Query 931 QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQ--IDRLITGRLQSLQT 988
QD + L + ++ +++ +D L +D++ ++Q +DR+I+ QS+
Sbjct 219 QDTLEAAGDKLQANLLRIQD-----ATMSHDDLHFVDRLVFDLQSKLDRIISWGQQSIDL 273
Query 989 YV 990
++
Sbjct 274 WI 275
>sp|B5YT56|MUKF_ECO5E Chromosome partition protein MukF OS=Escherichia
coli O157:H7 (strain EC4115 / EHEC) OX=444450 GN=mukF
PE=3 SV=1
Length=440
Score = 35.8 bits (81), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 15/122 (12%)
Query 879 PFAMQMAYRFNGIGVTQNVLYENQKQ----IANQFNK----AISQIQESLTTTSTALGKL 930
P +A F+ I +TQ ++ E Q+Q IA NK AIS + L+ TS L +L
Sbjct 159 PLKYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLREL 218
Query 931 QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQ--IDRLITGRLQSLQT 988
QD + L + ++ +++ +D L +D++ ++Q +DR+I+ QS+
Sbjct 219 QDTLEAAGDKLQANLLRIQD-----ATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDL 273
Query 989 YV 990
++
Sbjct 274 WI 275
>sp|Q8XDG2|MUKF_ECO57 Chromosome partition protein MukF OS=Escherichia
coli O157:H7 OX=83334 GN=mukF PE=3 SV=1
Length=440
Score = 35.8 bits (81), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 15/122 (12%)
Query 879 PFAMQMAYRFNGIGVTQNVLYENQKQ----IANQFNK----AISQIQESLTTTSTALGKL 930
P +A F+ I +TQ ++ E Q+Q IA NK AIS + L+ TS L +L
Sbjct 159 PLKYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLREL 218
Query 931 QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQ--IDRLITGRLQSLQT 988
QD + L + ++ +++ +D L +D++ ++Q +DR+I+ QS+
Sbjct 219 QDTLEAAGDKLQANLLRIQD-----ATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDL 273
Query 989 YV 990
++
Sbjct 274 WI 275
>sp|Q3Z3J9|MUKF_SHISS Chromosome partition protein MukF OS=Shigella
sonnei (strain Ss046) OX=300269 GN=mukF PE=3 SV=1
Length=440
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 15/122 (12%)
Query 879 PFAMQMAYRFNGIGVTQNVLYENQKQ----IANQFNK----AISQIQESLTTTSTALGKL 930
P +A F+ I +TQ ++ E Q+Q IA NK AIS + L+ TS L +L
Sbjct 159 PLKYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLREL 218
Query 931 QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQ--IDRLITGRLQSLQT 988
QD + L + ++ +++ +D L +D++ ++Q +DR+I+ QS+
Sbjct 219 QDTLEAAGDKLQANLLRIQD-----ATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDL 273
Query 989 YV 990
++
Sbjct 274 WI 275
>sp|P60294|MUKF_SHIFL Chromosome partition protein MukF OS=Shigella
flexneri OX=623 GN=mukF PE=3 SV=1
Length=440
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 15/122 (12%)
Query 879 PFAMQMAYRFNGIGVTQNVLYENQKQ----IANQFNK----AISQIQESLTTTSTALGKL 930
P +A F+ I +TQ ++ E Q+Q IA NK AIS + L+ TS L +L
Sbjct 159 PLKYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLREL 218
Query 931 QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQ--IDRLITGRLQSLQT 988
QD + L + ++ +++ +D L +D++ ++Q +DR+I+ QS+
Sbjct 219 QDTLEAAGDKLQANLLRIQD-----ATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDL 273
Query 989 YV 990
++
Sbjct 274 WI 275
>sp|Q0T6C0|MUKF_SHIF8 Chromosome partition protein MukF OS=Shigella
flexneri serotype 5b (strain 8401) OX=373384 GN=mukF PE=3
SV=1
Length=440
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 15/122 (12%)
Query 879 PFAMQMAYRFNGIGVTQNVLYENQKQ----IANQFNK----AISQIQESLTTTSTALGKL 930
P +A F+ I +TQ ++ E Q+Q IA NK AIS + L+ TS L +L
Sbjct 159 PLKYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLREL 218
Query 931 QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQ--IDRLITGRLQSLQT 988
QD + L + ++ +++ +D L +D++ ++Q +DR+I+ QS+
Sbjct 219 QDTLEAAGDKLQANLLRIQD-----ATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDL 273
Query 989 YV 990
++
Sbjct 274 WI 275
>sp|Q32E42|MUKF_SHIDS Chromosome partition protein MukF OS=Shigella
dysenteriae serotype 1 (strain Sd197) OX=300267 GN=mukF
PE=3 SV=1
Length=440
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 15/122 (12%)
Query 879 PFAMQMAYRFNGIGVTQNVLYENQKQ----IANQFNK----AISQIQESLTTTSTALGKL 930
P +A F+ I +TQ ++ E Q+Q IA NK AIS + L+ TS L +L
Sbjct 159 PLKYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLREL 218
Query 931 QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQ--IDRLITGRLQSLQT 988
QD + L + ++ +++ +D L +D++ ++Q +DR+I+ QS+
Sbjct 219 QDTLEAAGDKLQANLLRIQD-----ATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDL 273
Query 989 YV 990
++
Sbjct 274 WI 275
>sp|B1LJU1|MUKF_ECOSM Chromosome partition protein MukF OS=Escherichia
coli (strain SMS-3-5 / SECEC) OX=439855 GN=mukF PE=3
SV=1
Length=440
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 15/122 (12%)
Query 879 PFAMQMAYRFNGIGVTQNVLYENQKQ----IANQFNK----AISQIQESLTTTSTALGKL 930
P +A F+ I +TQ ++ E Q+Q IA NK AIS + L+ TS L +L
Sbjct 159 PLKYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLREL 218
Query 931 QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQ--IDRLITGRLQSLQT 988
QD + L + ++ +++ +D L +D++ ++Q +DR+I+ QS+
Sbjct 219 QDTLEAAGDKLQANLLRIQD-----ATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDL 273
Query 989 YV 990
++
Sbjct 274 WI 275
>sp|B6I8Z4|MUKF_ECOSE Chromosome partition protein MukF OS=Escherichia
coli (strain SE11) OX=409438 GN=mukF PE=3 SV=1
Length=440
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 15/122 (12%)
Query 879 PFAMQMAYRFNGIGVTQNVLYENQKQ----IANQFNK----AISQIQESLTTTSTALGKL 930
P +A F+ I +TQ ++ E Q+Q IA NK AIS + L+ TS L +L
Sbjct 159 PLKYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLREL 218
Query 931 QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQ--IDRLITGRLQSLQT 988
QD + L + ++ +++ +D L +D++ ++Q +DR+I+ QS+
Sbjct 219 QDTLEAAGDKLQANLLRIQD-----ATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDL 273
Query 989 YV 990
++
Sbjct 274 WI 275
>sp|B7N389|MUKF_ECOLU Chromosome partition protein MukF OS=Escherichia
coli O17:K52:H18 (strain UMN026 / ExPEC) OX=585056
GN=mukF PE=3 SV=1
Length=440
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 15/122 (12%)
Query 879 PFAMQMAYRFNGIGVTQNVLYENQKQ----IANQFNK----AISQIQESLTTTSTALGKL 930
P +A F+ I +TQ ++ E Q+Q IA NK AIS + L+ TS L +L
Sbjct 159 PLKYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLREL 218
Query 931 QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQ--IDRLITGRLQSLQT 988
QD + L + ++ +++ +D L +D++ ++Q +DR+I+ QS+
Sbjct 219 QDTLEAAGDKLQANLLRIQD-----ATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDL 273
Query 989 YV 990
++
Sbjct 274 WI 275
>sp|P60293|MUKF_ECOLI Chromosome partition protein MukF OS=Escherichia
coli (strain K12) OX=83333 GN=mukF PE=1 SV=1
Length=440
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 15/122 (12%)
Query 879 PFAMQMAYRFNGIGVTQNVLYENQKQ----IANQFNK----AISQIQESLTTTSTALGKL 930
P +A F+ I +TQ ++ E Q+Q IA NK AIS + L+ TS L +L
Sbjct 159 PLKYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLREL 218
Query 931 QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQ--IDRLITGRLQSLQT 988
QD + L + ++ +++ +D L +D++ ++Q +DR+I+ QS+
Sbjct 219 QDTLEAAGDKLQANLLRIQD-----ATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDL 273
Query 989 YV 990
++
Sbjct 274 WI 275
>sp|B1X8M6|MUKF_ECODH Chromosome partition protein MukF OS=Escherichia
coli (strain K12 / DH10B) OX=316385 GN=mukF PE=3 SV=1
Length=440
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 15/122 (12%)
Query 879 PFAMQMAYRFNGIGVTQNVLYENQKQ----IANQFNK----AISQIQESLTTTSTALGKL 930
P +A F+ I +TQ ++ E Q+Q IA NK AIS + L+ TS L +L
Sbjct 159 PLKYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLREL 218
Query 931 QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQ--IDRLITGRLQSLQT 988
QD + L + ++ +++ +D L +D++ ++Q +DR+I+ QS+
Sbjct 219 QDTLEAAGDKLQANLLRIQD-----ATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDL 273
Query 989 YV 990
++
Sbjct 274 WI 275
>sp|C4ZQ48|MUKF_ECOBW Chromosome partition protein MukF OS=Escherichia
coli (strain K12 / MC4100 / BW2952) OX=595496 GN=mukF
PE=3 SV=1
Length=440
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 15/122 (12%)
Query 879 PFAMQMAYRFNGIGVTQNVLYENQKQ----IANQFNK----AISQIQESLTTTSTALGKL 930
P +A F+ I +TQ ++ E Q+Q IA NK AIS + L+ TS L +L
Sbjct 159 PLKYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLREL 218
Query 931 QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQ--IDRLITGRLQSLQT 988
QD + L + ++ +++ +D L +D++ ++Q +DR+I+ QS+
Sbjct 219 QDTLEAAGDKLQANLLRIQD-----ATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDL 273
Query 989 YV 990
++
Sbjct 274 WI 275
>sp|B7M851|MUKF_ECO8A Chromosome partition protein MukF OS=Escherichia
coli O8 (strain IAI1) OX=585034 GN=mukF PE=3 SV=1
Length=440
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 15/122 (12%)
Query 879 PFAMQMAYRFNGIGVTQNVLYENQKQ----IANQFNK----AISQIQESLTTTSTALGKL 930
P +A F+ I +TQ ++ E Q+Q IA NK AIS + L+ TS L +L
Sbjct 159 PLKYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLREL 218
Query 931 QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQ--IDRLITGRLQSLQT 988
QD + L + ++ +++ +D L +D++ ++Q +DR+I+ QS+
Sbjct 219 QDTLEAAGDKLQANLLRIQD-----ATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDL 273
Query 989 YV 990
++
Sbjct 274 WI 275
>sp|B7NM52|MUKF_ECO7I Chromosome partition protein MukF OS=Escherichia
coli O7:K1 (strain IAI39 / ExPEC) OX=585057 GN=mukF
PE=3 SV=1
Length=440
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 15/122 (12%)
Query 879 PFAMQMAYRFNGIGVTQNVLYENQKQ----IANQFNK----AISQIQESLTTTSTALGKL 930
P +A F+ I +TQ ++ E Q+Q IA NK AIS + L+ TS L +L
Sbjct 159 PLKYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLREL 218
Query 931 QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQ--IDRLITGRLQSLQT 988
QD + L + ++ +++ +D L +D++ ++Q +DR+I+ QS+
Sbjct 219 QDTLEAAGDKLQANLLRIQD-----ATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDL 273
Query 989 YV 990
++
Sbjct 274 WI 275
>sp|B7LE21|MUKF_ECO55 Chromosome partition protein MukF OS=Escherichia
coli (strain 55989 / EAEC) OX=585055 GN=mukF PE=3 SV=1
Length=440
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 15/122 (12%)
Query 879 PFAMQMAYRFNGIGVTQNVLYENQKQ----IANQFNK----AISQIQESLTTTSTALGKL 930
P +A F+ I +TQ ++ E Q+Q IA NK AIS + L+ TS L +L
Sbjct 159 PLKYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLREL 218
Query 931 QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQ--IDRLITGRLQSLQT 988
QD + L + ++ +++ +D L +D++ ++Q +DR+I+ QS+
Sbjct 219 QDTLEAAGDKLQANLLRIQD-----ATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDL 273
Query 989 YV 990
++
Sbjct 274 WI 275
>sp|A7ZK12|MUKF_ECO24 Chromosome partition protein MukF OS=Escherichia
coli O139:H28 (strain E24377A / ETEC) OX=331111 GN=mukF
PE=3 SV=1
Length=440
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 15/122 (12%)
Query 879 PFAMQMAYRFNGIGVTQNVLYENQKQ----IANQFNK----AISQIQESLTTTSTALGKL 930
P +A F+ I +TQ ++ E Q+Q IA NK AIS + L+ TS L +L
Sbjct 159 PLKYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLREL 218
Query 931 QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQ--IDRLITGRLQSLQT 988
QD + L + ++ +++ +D L +D++ ++Q +DR+I+ QS+
Sbjct 219 QDTLEAAGDKLQANLLRIQD-----ATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDL 273
Query 989 YV 990
++
Sbjct 274 WI 275
>sp|B7LN84|MUKF_ESCF3 Chromosome partition protein MukF OS=Escherichia
fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766
/ IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC
12128 / CDC 0568-73) OX=585054 GN=mukF PE=3 SV=1
Length=440
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 15/122 (12%)
Query 879 PFAMQMAYRFNGIGVTQNVLYENQKQ----IANQFNK----AISQIQESLTTTSTALGKL 930
P +A F+ I +TQ ++ E Q+Q IA NK AIS + L+ TS L +L
Sbjct 159 PLKYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLREL 218
Query 931 QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQ--IDRLITGRLQSLQT 988
QD + L + ++ +++ +D L +D++ ++Q +DR+I+ QS+
Sbjct 219 QDTLEAAGDKLQANLLRIQD-----ATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDL 273
Query 989 YV 990
++
Sbjct 274 WI 275
>sp|O67068|SYR_AQUAE Arginine--tRNA ligase OS=Aquifex aeolicus
(strain VF5) OX=224324 GN=argS PE=3 SV=1
Length=583
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 47/103 (46%), Gaps = 15/103 (15%)
Query 175 KSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITNFRAI 234
+ N K +RE + K + LY K Y+P DVV DL S + L + + R
Sbjct 224 EEANLKEVREKILKEESIELYYTKKYEPKDVV-DLLSNYG---------LDLMMKEIRED 273
Query 235 LTAFSPAQDIWGTSAAAYFVGYLKPTTFMLK-----YDENGTI 272
L+ + D+W + + Y G ++ +LK Y+++G +
Sbjct 274 LSLMDISFDVWFSERSLYDSGEVERLINLLKEKGYVYEKDGAL 316
>sp|A7ZYM4|MUKF_ECOHS Chromosome partition protein MukF OS=Escherichia
coli O9:H4 (strain HS) OX=331112 GN=mukF PE=3 SV=1
Length=440
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 15/122 (12%)
Query 879 PFAMQMAYRFNGIGVTQNVLYENQKQ----IANQFNK----AISQIQESLTTTSTALGKL 930
P +A F+ I +TQ ++ E Q+Q IA NK AIS + L+ TS L +L
Sbjct 159 PLKYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLREL 218
Query 931 QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQ--IDRLITGRLQSLQT 988
QD + L + ++ +++ +D L +D++ ++Q +DR+I+ QS+
Sbjct 219 QDTLEAAGDKLQANLLRIQD-----ATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDL 273
Query 989 YV 990
++
Sbjct 274 WI 275
>sp|Q1RDT5|MUKF_ECOUT Chromosome partition protein MukF OS=Escherichia
coli (strain UTI89 / UPEC) OX=364106 GN=mukF PE=3 SV=1
Length=440
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 15/122 (12%)
Query 879 PFAMQMAYRFNGIGVTQNVLYENQKQ----IANQFNK----AISQIQESLTTTSTALGKL 930
P +A F+ I +TQ ++ E Q+Q IA NK AIS + L+ TS L +L
Sbjct 159 PLKYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLREL 218
Query 931 QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQ--IDRLITGRLQSLQT 988
QD + L + ++ +++ +D L +D++ ++Q +DR+I+ QS+
Sbjct 219 QDTLEAAGDKLQANLLRIQD-----ATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDL 273
Query 989 YV 990
++
Sbjct 274 WI 275
>sp|Q8FJA4|MUKF_ECOL6 Chromosome partition protein MukF OS=Escherichia
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310
GN=mukF PE=3 SV=1
Length=440
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 15/122 (12%)
Query 879 PFAMQMAYRFNGIGVTQNVLYENQKQ----IANQFNK----AISQIQESLTTTSTALGKL 930
P +A F+ I +TQ ++ E Q+Q IA NK AIS + L+ TS L +L
Sbjct 159 PLKYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLREL 218
Query 931 QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQ--IDRLITGRLQSLQT 988
QD + L + ++ +++ +D L +D++ ++Q +DR+I+ QS+
Sbjct 219 QDTLEAAGDKLQANLLRIQD-----ATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDL 273
Query 989 YV 990
++
Sbjct 274 WI 275
>sp|Q0TJD1|MUKF_ECOL5 Chromosome partition protein MukF OS=Escherichia
coli O6:K15:H31 (strain 536 / UPEC) OX=362663 GN=mukF
PE=3 SV=1
Length=440
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 15/122 (12%)
Query 879 PFAMQMAYRFNGIGVTQNVLYENQKQ----IANQFNK----AISQIQESLTTTSTALGKL 930
P +A F+ I +TQ ++ E Q+Q IA NK AIS + L+ TS L +L
Sbjct 159 PLKYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLREL 218
Query 931 QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQ--IDRLITGRLQSLQT 988
QD + L + ++ +++ +D L +D++ ++Q +DR+I+ QS+
Sbjct 219 QDTLEAAGDKLQANLLRIQD-----ATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDL 273
Query 989 YV 990
++
Sbjct 274 WI 275
>sp|A1A9J9|MUKF_ECOK1 Chromosome partition protein MukF OS=Escherichia
coli O1:K1 / APEC OX=405955 GN=mukF PE=3 SV=1
Length=440
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 15/122 (12%)
Query 879 PFAMQMAYRFNGIGVTQNVLYENQKQ----IANQFNK----AISQIQESLTTTSTALGKL 930
P +A F+ I +TQ ++ E Q+Q IA NK AIS + L+ TS L +L
Sbjct 159 PLKYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLREL 218
Query 931 QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQ--IDRLITGRLQSLQT 988
QD + L + ++ +++ +D L +D++ ++Q +DR+I+ QS+
Sbjct 219 QDTLEAAGDKLQANLLRIQD-----ATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDL 273
Query 989 YV 990
++
Sbjct 274 WI 275
>sp|B7MS40|MUKF_ECO81 Chromosome partition protein MukF OS=Escherichia
coli O81 (strain ED1a) OX=585397 GN=mukF PE=3 SV=1
Length=440
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 15/122 (12%)
Query 879 PFAMQMAYRFNGIGVTQNVLYENQKQ----IANQFNK----AISQIQESLTTTSTALGKL 930
P +A F+ I +TQ ++ E Q+Q IA NK AIS + L+ TS L +L
Sbjct 159 PLKYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLREL 218
Query 931 QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQ--IDRLITGRLQSLQT 988
QD + L + ++ +++ +D L +D++ ++Q +DR+I+ QS+
Sbjct 219 QDTLEAAGDKLQANLLRIQD-----ATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDL 273
Query 989 YV 990
++
Sbjct 274 WI 275
>sp|B7MHN1|MUKF_ECO45 Chromosome partition protein MukF OS=Escherichia
coli O45:K1 (strain S88 / ExPEC) OX=585035 GN=mukF
PE=3 SV=1
Length=440
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 15/122 (12%)
Query 879 PFAMQMAYRFNGIGVTQNVLYENQKQ----IANQFNK----AISQIQESLTTTSTALGKL 930
P +A F+ I +TQ ++ E Q+Q IA NK AIS + L+ TS L +L
Sbjct 159 PLKYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLREL 218
Query 931 QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQ--IDRLITGRLQSLQT 988
QD + L + ++ +++ +D L +D++ ++Q +DR+I+ QS+
Sbjct 219 QDTLEAAGDKLQANLLRIQD-----ATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDL 273
Query 989 YV 990
++
Sbjct 274 WI 275
>sp|P75434|Y344_MYCPN UPF0134 protein MPN_344 OS=Mycoplasma pneumoniae
(strain ATCC 29342 / M129 / Subtype 1) OX=272634 GN=MPN_344
PE=3 SV=1
Length=216
Score = 35.0 bits (79), Expect = 3.4, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 39/77 (51%), Gaps = 1/77 (1%)
Query 896 NVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAI 955
+VL+E QK Q QI+E L A G+ ++ Q Q +N + ++ +
Sbjct 141 DVLFELQKAQGEQIRIQGEQIKE-LKVEQKAQGETLQLILQTLQKMNDRLDKIEGKMDKM 199
Query 956 SSVLNDILSRLDKVEAE 972
S ++ + +RLDK+E++
Sbjct 200 ESRMDKMETRLDKLESK 216
>sp|Q31YS8|MUKF_SHIBS Chromosome partition protein MukF OS=Shigella
boydii serotype 4 (strain Sb227) OX=300268 GN=mukF PE=3
SV=1
Length=440
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 15/122 (12%)
Query 879 PFAMQMAYRFNGIGVTQNVLYENQKQ----IANQFNK----AISQIQESLTTTSTALGKL 930
P +A F+ I +TQ ++ E Q+Q IA NK AIS + L+ TS L +L
Sbjct 159 PLKYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLREL 218
Query 931 QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQ--IDRLITGRLQSLQT 988
QD + L + ++ +++ +D L +D++ ++Q +DR+I+ QS+
Sbjct 219 QDTLEAAGDKLQANLLRIQD-----ATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDL 273
Query 989 YV 990
++
Sbjct 274 WI 275
>sp|A1S7B2|HFLD_SHEAM High frequency lysogenization protein HflD
homolog OS=Shewanella amazonensis (strain ATCC BAA-1098 /
SB2B) OX=326297 GN=hflD PE=3 SV=1
Length=204
Score = 34.7 bits (78), Expect = 4.2, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 7/82 (9%)
Query 916 IQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQI 975
++ L+ ++ ALG L + +NQ + LN ++S+ +DI+S L ++Q
Sbjct 91 LERKLSRSNAALGMLSERINQIHRQLNHFAITDEQVIANLASIYSDIISNLG---PKLQ- 146
Query 976 DRLITGRLQSLQTYVTQQLIRA 997
ITG LQ + QQ IRA
Sbjct 147 ---ITGNPNVLQRPLVQQKIRA 165
>sp|B2TUF7|MUKF_SHIB3 Chromosome partition protein MukF OS=Shigella
boydii serotype 18 (strain CDC 3083-94 / BS512) OX=344609
GN=mukF PE=3 SV=1
Length=440
Score = 35.0 bits (79), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 15/122 (12%)
Query 879 PFAMQMAYRFNGIGVTQNVLYENQKQ----IANQFNK----AISQIQESLTTTSTALGKL 930
P +A F+ I +TQ ++ E Q+Q IA NK AIS + L+ TS L +L
Sbjct 159 PLKYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLREL 218
Query 931 QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQ--IDRLITGRLQSLQT 988
QD + L + ++ +++ +D L +D++ ++Q +DR+I+ QS+
Sbjct 219 QDTLEAAGDKLQANLLRIQD-----ATMPHDDLHFVDRLVFDLQSKLDRIISWGQQSIDL 273
Query 989 YV 990
++
Sbjct 274 WI 275
>sp|P0DJF6|VSPC_TRIAB Thrombin-like enzyme chitribrisin OS=Trimeresurus
albolabris OX=8765 PE=1 SV=1
Length=258
Score = 34.3 bits (77), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 54/132 (41%), Gaps = 16/132 (12%)
Query 633 AGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQ-KSIVAYTMSLGADSSIAYSN 691
G LI E+V T+ CD+P I H+ S+L Q + L +++ +
Sbjct 51 GGTLINQEYVLTAAHCDMP-NMQILLGVHSASVLNDDEQARDPEEKYFCLSSNNDTKWDK 109
Query 692 NTIAI----PTNFSISITTEVMPVSMAKTSVDCNMYICG----------DSTECANLLLQ 737
+ + I P N S+ I +P S + C + G D+++CAN+ +
Sbjct 110 DIMLIRLNRPVNNSVHIAPLTLPSSPPRLGAICRIMGWGAITSPNETYPDASQCANINIL 169
Query 738 YGSFCTQLNRAL 749
S C + R +
Sbjct 170 RYSLCQAVYRGM 181
>sp|B1IW09|MUKF_ECOLC Chromosome partition protein MukF OS=Escherichia
coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB
8545 / WDCM 00012 / Crooks) OX=481805 GN=mukF PE=3 SV=1
Length=440
Score = 34.3 bits (77), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 15/122 (12%)
Query 879 PFAMQMAYRFNGIGVTQNVLYENQKQ----IANQFNK----AISQIQESLTTTSTALGKL 930
P +A F+ I +TQ ++ E Q+Q IA NK AIS + L+ TS L +L
Sbjct 159 PLKYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLREL 218
Query 931 QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQ--IDRLITGRLQSLQT 988
QD + L + ++ +++ +D L +D++ ++Q +DR+I QS+
Sbjct 219 QDTLEAAGDKLQANLLRIQD-----ATMTHDDLHFVDRLVFDLQSKLDRIICWGQQSIDL 273
Query 989 YV 990
++
Sbjct 274 WI 275
>sp|Q6D445|MUKF_PECAS Chromosome partition protein MukF OS=Pectobacterium
atrosepticum (strain SCRI 1043 / ATCC BAA-672) OX=218491
GN=mukF PE=3 SV=1
Length=441
Score = 34.3 bits (77), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 25/106 (24%), Positives = 49/106 (46%), Gaps = 15/106 (14%)
Query 879 PFAMQMAYRFNGIGVTQNVLYENQKQIANQ--------FNKAISQIQESLTTTSTALGKL 930
P +A F+ I ++Q V+ E Q+ + + + AIS ++ LT TS+ L +L
Sbjct 159 PLKYSVAEIFDSIDLSQRVMDEQQQGVKDDIAALLNQDWRAAISSCEQLLTETSSTLREL 218
Query 931 QDVVNQNAQALNTLVKQLSS-------NFGAISSVLNDILSRLDKV 969
QD + L T + + N + ++ D+ ++LD++
Sbjct 219 QDTLEAAGDKLQTSLLSIQDTIMNNPHNLEFVDKLVFDLQNKLDRI 264
>sp|A3MZU5|MUKF_ACTP2 Chromosome partition protein MukF OS=Actinobacillus
pleuropneumoniae serotype 5b (strain L20) OX=416269
GN=mukF PE=3 SV=1
Length=443
Score = 34.3 bits (77), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 38/161 (24%), Positives = 73/161 (45%), Gaps = 20/161 (12%)
Query 840 LTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLY 899
L++ ++ D++ A +AA G W A P +A F+ I ++Q ++
Sbjct 126 LSIQLSIVADEIQRASSAA-EEGGDERFWRNNVFA----PLKYSVAEIFDSIDLSQRMMD 180
Query 900 ENQKQIANQFNKAISQ--------IQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSN 951
ENQ QI + + +SQ ++ L TS L +LQD +N L + ++ S
Sbjct 181 ENQHQIRERIAELLSQNWHEAILSCEQLLDETSGNLRELQDTLNAAGDKLQAQLLRIQSC 240
Query 952 FGAISSVLNDILSRLDKVEAEVQ--IDRLITGRLQSLQTYV 990
+ D L +D++ +Q +DR+I+ Q++ ++
Sbjct 241 L-----IGRDDLDFVDQLIVNLQNKLDRIISWGQQAIDLWI 276
>sp|P37535|YAAN_BACSU Uncharacterized protein YaaN OS=Bacillus
subtilis (strain 168) OX=224308 GN=yaaN PE=3 SV=1
Length=386
Score = 34.3 bits (77), Expect = 8.7, Method: Composition-based stats.
Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 7/103 (7%)
Query 881 AMQMAYRFNGIGVTQNVLYENQKQ--IANQFNKAISQIQES-LTTTSTALGKLQDVVNQ- 936
A+Q+A + + + VLY +Q Q + N + I+ +Q+ + LG+L + Q
Sbjct 51 AIQLAGQIDHKNMQSIVLYGSQAQSKLLNFSHDMINHVQKKDVGEIGEILGELMKKLEQV 110
Query 937 NAQALNTLVKQ-LSSNFGAISSVLNDILSRLDKVEAEVQIDRL 978
N L + K L+ FG +SS L ++LS+ K VQIDR+
Sbjct 111 NPDDLQSKKKGFLARMFGRVSSSLQEVLSKYQK--TSVQIDRI 151
>sp|Q9UL45|BL1S6_HUMAN Biogenesis of lysosome-related organelles
complex 1 subunit 6 OS=Homo sapiens OX=9606 GN=BLOC1S6 PE=1
SV=1
Length=172
Score = 33.1 bits (74), Expect = 9.5, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query 1127 LDSFKEELDKYFKNHTSPDVD--LGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQE 1184
LD+ ++E+ K+ + H+ D++ + +A +VNI+KE+ L+E L + + LQ+
Sbjct 82 LDTLEQEISKFKECHSMLDINALFAEAKHYHAKLVNIRKEMLMLHEKTSKLKKRALKLQQ 141
>sp|B0BUD7|MUKF_ACTPJ Chromosome partition protein MukF OS=Actinobacillus
pleuropneumoniae serotype 3 (strain JL03) OX=434271
GN=mukF PE=3 SV=1
Length=443
Score = 33.9 bits (76), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 38/161 (24%), Positives = 73/161 (45%), Gaps = 20/161 (12%)
Query 840 LTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLY 899
L++ ++ D++ A +AA G W A P +A F+ I ++Q ++
Sbjct 126 LSIQLSIVADEIQRASSAA-EEGGDERFWRNNVFA----PLKYSVAEIFDSIDLSQRMMD 180
Query 900 ENQKQIANQFNKAISQ--------IQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSN 951
ENQ QI + + +SQ ++ L TS L +LQD +N L + ++ S
Sbjct 181 ENQHQIRERIAELLSQNWHEAILSCEQLLDETSGNLRELQDTLNAAGDKLQAQLLRIQSC 240
Query 952 FGAISSVLNDILSRLDKVEAEVQ--IDRLITGRLQSLQTYV 990
+ D L +D++ +Q +DR+I+ Q++ ++
Sbjct 241 L-----IGRDDLDFVDQLIVNLQNKLDRIISWGQQAIDLWI 276
Lambda K H a alpha
0.321 0.136 0.414 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 149140636875
Results from round 2
Query= sp|P59594|SPIKE_SARS Spike glycoprotein OS=Severe acute respiratory
syndrome coronavirus OX=694009 GN=S PE=1 SV=1
Length=1255
Score E
Sequences producing significant alignments: (Bits) Value
Sequences used in model and found again:
sp|P59594|SPIKE_SARS Spike glycoprotein OS=Severe acute respirato... 1674 0.0
sp|Q0Q475|SPIKE_BC279 Spike glycoprotein OS=Bat coronavirus 279/2... 1555 0.0
sp|Q3I5J5|SPIKE_BCRP3 Spike glycoprotein OS=Bat coronavirus Rp3/2... 1548 0.0
sp|P0DTC2|SPIKE_SARS2 Spike glycoprotein OS=Severe acute respirat... 1546 0.0
sp|Q3LZX1|SPIKE_BCHK3 Spike glycoprotein OS=Bat coronavirus HKU3 ... 1542 0.0
sp|P11224|SPIKE_CVMA5 Spike glycoprotein OS=Murine coronavirus (s... 1375 0.0
sp|P11225|SPIKE_CVMJH Spike glycoprotein OS=Murine coronavirus (s... 1360 0.0
sp|P36334|SPIKE_CVHOC Spike glycoprotein OS=Human coronavirus OC4... 1271 0.0
sp|Q9IKD1|SPIKE_CVRSD Spike glycoprotein OS=Rat coronavirus (stra... 1196 0.0
sp|Q0ZME7|SPIKE_CVHN5 Spike glycoprotein OS=Human coronavirus HKU... 1190 0.0
sp|Q14EB0|SPIKE_CVHN2 Spike glycoprotein OS=Human coronavirus HKU... 1186 0.0
sp|A3EXG6|SPIKE_BCHK9 Spike glycoprotein OS=Bat coronavirus HKU9 ... 1181 0.0
sp|A3EXD0|SPIKE_BCHK5 Spike glycoprotein OS=Bat coronavirus HKU5 ... 1121 0.0
sp|Q0Q4F2|SPIKE_BC133 Spike glycoprotein OS=Bat coronavirus 133/2... 1119 0.0
sp|A3EX94|SPIKE_BCHK4 Spike glycoprotein OS=Bat coronavirus HKU4 ... 1105 0.0
sp|K9N5Q8|SPIKE_MERS1 Spike glycoprotein OS=Middle East respirato... 1094 0.0
sp|P25192|SPIKE_CVBLY Spike glycoprotein OS=Bovine coronavirus (s... 948 0.0
sp|Q9QAQ8|SPIKE_CVBOK Spike glycoprotein OS=Bovine coronavirus (s... 946 0.0
sp|Q8V436|SPIKE_CVBLU Spike glycoprotein OS=Bovine coronavirus (s... 946 0.0
sp|Q9QAR5|SPIKE_CVBLS Spike glycoprotein OS=Bovine coronavirus (s... 944 0.0
sp|Q91A26|SPIKE_CVBEN Spike glycoprotein OS=Bovine coronavirus (s... 943 0.0
sp|P25194|SPIKE_CVBV Spike glycoprotein OS=Bovine coronavirus (st... 943 0.0
sp|P25191|SPIKE_CVBL9 Spike glycoprotein OS=Bovine coronavirus (s... 941 0.0
sp|P25190|SPIKE_CVBF Spike glycoprotein OS=Bovine coronavirus (st... 940 0.0
sp|P15777|SPIKE_CVBM Spike glycoprotein OS=Bovine coronavirus (st... 938 0.0
sp|P25193|SPIKE_CVBQ Spike glycoprotein OS=Bovine coronavirus (st... 936 0.0
sp|P22432|SPIKE_CVM4 Spike glycoprotein OS=Murine coronavirus (st... 931 0.0
sp|Q8BB25|SPIKE_CVP67 Spike glycoprotein OS=Porcine hemagglutinat... 926 0.0
sp|Q02385|SPIKE_CVMJC Spike glycoprotein OS=Murine coronavirus (s... 924 0.0
sp|Q8JSP8|SPIKE_CVPIA Spike glycoprotein OS=Porcine hemagglutinat... 913 0.0
sp|Q5MQD0|SPIKE_CVHN1 Spike glycoprotein OS=Human coronavirus HKU... 892 0.0
sp|P27655|SPIKE_CVPR8 Spike glycoprotein OS=Porcine respiratory c... 840 0.0
sp|P10033|SPIKE_FIPV Spike glycoprotein OS=Feline coronavirus (st... 838 0.0
sp|P07946|SPIKE_CVPPU Spike glycoprotein OS=Porcine transmissible... 835 0.0
sp|Q65984|SPIKE_CVCAK Spike glycoprotein OS=Canine coronavirus (s... 835 0.0
sp|P33470|SPIKE_CVPMI Spike glycoprotein OS=Porcine transmissible... 835 0.0
sp|Q7T6T3|SPIKE_CVCBG Spike glycoprotein OS=Canine coronavirus (s... 834 0.0
sp|P24413|SPIKE_CVPRM Spike glycoprotein OS=Porcine respiratory c... 833 0.0
sp|Q01977|SPIKE_CVPRT Spike glycoprotein OS=Porcine transmissible... 832 0.0
sp|P18450|SPIKE_CVPFS Spike glycoprotein OS=Porcine transmissible... 829 0.0
sp|P36300|SPIKE_CVCAI Spike glycoprotein OS=Canine coronavirus (s... 823 0.0
sp|P15423|SPIKE_CVH22 Spike glycoprotein OS=Human coronavirus 229... 757 0.0
sp|Q6Q1S2|SPIKE_CVHNL Spike glycoprotein OS=Human coronavirus NL6... 745 0.0
sp|Q0Q466|SPIKE_BC512 Spike glycoprotein OS=Bat coronavirus 512/2... 697 0.0
sp|Q91AV1|SPIKE_PEDV7 Spike glycoprotein OS=Porcine epidemic diar... 681 0.0
sp|P12651|SPIKE_IBVM Spike glycoprotein OS=Avian infectious bronc... 678 0.0
sp|P05135|SPIKE_IBV6 Spike glycoprotein OS=Avian infectious bronc... 677 0.0
sp|P12650|SPIKE_IBVK Spike glycoprotein OS=Avian infectious bronc... 675 0.0
sp|P12722|SPIKE_IBVD2 Spike glycoprotein OS=Avian infectious bron... 675 0.0
sp|P11223|SPIKE_IBVB Spike glycoprotein OS=Avian infectious bronc... 669 0.0
Sequences not found previously or not previously below threshold:
sp|P30206|SPIKE_IBVU1 Spike glycoprotein (Fragment) OS=Avian infe... 52.1 3e-05
sp|P17662|SPIKE_IBVD3 Spike glycoprotein (Fragment) OS=Avian infe... 51.3 5e-05
sp|P30208|SPIKE_IBVU3 Spike glycoprotein (Fragment) OS=Avian infe... 50.1 1e-04
sp|P30207|SPIKE_IBVU2 Spike glycoprotein (Fragment) OS=Avian infe... 49.4 2e-04
sp|B0R6I4|BAST_HALS3 Transducer protein BasT OS=Halobacterium sal... 49.0 3e-04
sp|B8F3P6|MUKF_GLAP5 Chromosome partition protein MukF OS=Glaesse... 42.4 0.027
sp|B3PIA0|PNP_CELJU Polyribonucleotide nucleotidyltransferase OS=... 41.7 0.052
sp|P30141|MRP4_STRPY Fibrinogen- and Ig-binding protein OS=Strept... 41.3 0.056
sp|Q3BUW9|CCME1_XANE5 Cytochrome c-type biogenesis protein CcmE 1... 37.8 0.22
sp|Q7VL94|MUKF_HAEDU Chromosome partition protein MukF OS=Haemoph... 38.2 0.45
sp|Q6LUI8|PNP_PHOPR Polyribonucleotide nucleotidyltransferase OS=... 38.2 0.52
sp|Q6D445|MUKF_PECAS Chromosome partition protein MukF OS=Pectoba... 37.4 0.90
sp|P12569|FUS_CDVO Fusion glycoprotein F0 OS=Canine distemper vir... 37.4 1.0
sp|Q008X4|SPIKE_WBV24 Spike glycoprotein OS=White bream virus (is... 37.4 1.1
sp|O54990|PROM1_MOUSE Prominin-1 OS=Mus musculus OX=10090 GN=Prom... 37.4 1.1
sp|A5UEK6|MUKF_HAEIG Chromosome partition protein MukF OS=Haemoph... 37.0 1.1
sp|B0BUD7|MUKF_ACTPJ Chromosome partition protein MukF OS=Actinob... 37.0 1.2
sp|B3GXC3|MUKF_ACTP7 Chromosome partition protein MukF OS=Actinob... 37.0 1.2
sp|A3MZU5|MUKF_ACTP2 Chromosome partition protein MukF OS=Actinob... 37.0 1.2
sp|Q9X0M7|MCP2_THEMA Methyl-accepting chemotaxis protein 2 OS=The... 37.0 1.2
sp|Q6C0L6|ATG17_YARLI Autophagy-related protein 17 OS=Yarrowia li... 37.0 1.3
sp|A5N4M6|SYC_CLOK5 Cysteine--tRNA ligase OS=Clostridium kluyveri... 36.7 1.5
sp|B9DY88|SYC_CLOK1 Cysteine--tRNA ligase OS=Clostridium kluyveri... 36.7 1.5
sp|Q08581|SLK19_YEAST Kinetochore protein SLK19 OS=Saccharomyces ... 36.7 1.8
sp|P0DM86|CRFC_ECOLX Clamp-binding protein CrfC OS=Escherichia co... 36.7 1.9
sp|O30867|MUKF_HAEAE Chromosome partition protein MukF OS=Haemoph... 36.3 2.3
sp|P45185|MUKF_HAEIN Chromosome partition protein MukF OS=Haemoph... 36.3 2.3
sp|A5UBY0|MUKF_HAEIE Chromosome partition protein MukF OS=Haemoph... 36.3 2.3
sp|A7MEU5|MUKF_CROS8 Chromosome partition protein MukF OS=Cronoba... 35.5 3.4
sp|F1QC17|EMI1A_DANRE EMILIN-1-A OS=Danio rerio OX=7955 GN=emilin... 35.5 4.1
sp|A8F461|FLGI_PSELT Flagellar P-ring protein OS=Pseudothermotoga... 35.1 4.4
sp|P10865|FUS_NDVM Fusion glycoprotein F0 OS=Newcastle disease vi... 35.1 5.1
sp|P15492|HLYB_VIBCH Methyl-accepting chemotaxis protein HlyB OS=... 35.1 5.2
sp|P0C6W0|R1AB_BC512 Replicase polyprotein 1ab OS=Bat coronavirus... 35.5 5.3
sp|P35936|FUS_NDVD Fusion glycoprotein F0 OS=Newcastle disease vi... 34.7 5.8
sp|P33615|FUS_NDVQ Fusion glycoprotein F0 OS=Newcastle disease vi... 34.7 6.0
sp|P33612|FUS_NDVH3 Fusion glycoprotein F0 OS=Newcastle disease v... 34.7 7.1
sp|Q9X1E2|MCP4_THEMA Methyl-accepting chemotaxis protein 4 OS=The... 34.7 7.2
sp|B1WYT4|SASA_CROS5 Adaptive-response sensory kinase SasA OS=Cro... 34.3 7.3
sp|Q09094|REC15_SCHPO Meiotic recombination protein rec15 OS=Schi... 33.6 7.5
sp|P14623|FUS_NDVI Fusion glycoprotein F0 OS=Newcastle disease vi... 34.3 8.1
sp|B7K4P4|NUSB_RIPO1 Transcription antitermination protein NusB O... 33.6 9.6
>sp|P59594|SPIKE_SARS Spike glycoprotein OS=Severe acute respiratory
syndrome coronavirus OX=694009 GN=S PE=1 SV=1
Length=1255
Score = 1674 bits (4335), Expect = 0.0, Method: Composition-based stats.
Identities = 1255/1255 (100%), Positives = 1255/1255 (100%), Gaps = 0/1255 (0%)
Query 1 MFIFLLFLTLTSGSDLDRCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFL 60
MFIFLLFLTLTSGSDLDRCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFL
Sbjct 1 MFIFLLFLTLTSGSDLDRCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFL 60
Query 61 PFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNS 120
PFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNS
Sbjct 61 PFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNS 120
Query 121 TNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFK 180
TNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFK
Sbjct 121 TNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFK 180
Query 181 HLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITNFRAILTAFSP 240
HLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITNFRAILTAFSP
Sbjct 181 HLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITNFRAILTAFSP 240
Query 241 AQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIY 300
AQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIY
Sbjct 241 AQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIY 300
Query 301 QTSNFRVVPSGDVVRFPNITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTF 360
QTSNFRVVPSGDVVRFPNITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTF
Sbjct 301 QTSNFRVVPSGDVVRFPNITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTF 360
Query 361 FSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCV 420
FSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCV
Sbjct 361 FSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCV 420
Query 421 LAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLND 480
LAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLND
Sbjct 421 LAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLND 480
Query 481 YGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFNGLTGTGVLTP 540
YGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFNGLTGTGVLTP
Sbjct 481 YGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFNGLTGTGVLTP 540
Query 541 SSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQD 600
SSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQD
Sbjct 541 SSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQD 600
Query 601 VNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASY 660
VNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASY
Sbjct 601 VNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASY 660
Query 661 HTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDC 720
HTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDC
Sbjct 661 HTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDC 720
Query 721 NMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFG 780
NMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFG
Sbjct 721 NMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFG 780
Query 781 GFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARDLICAQKFNGL 840
GFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARDLICAQKFNGL
Sbjct 781 GFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARDLICAQKFNGL 840
Query 841 TVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYE 900
TVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYE
Sbjct 841 TVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYE 900
Query 901 NQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLN 960
NQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLN
Sbjct 901 NQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLN 960
Query 961 DILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSK 1020
DILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSK
Sbjct 961 DILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSK 1020
Query 1021 RVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFN 1080
RVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFN
Sbjct 1021 RVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFN 1080
Query 1081 GTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPLQPELDSFKEELDKYFKN 1140
GTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPLQPELDSFKEELDKYFKN
Sbjct 1081 GTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPLQPELDSFKEELDKYFKN 1140
Query 1141 HTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWL 1200
HTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWL
Sbjct 1141 HTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWL 1200
Query 1201 GFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDEDDSEPVLKGVKLHYT 1255
GFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDEDDSEPVLKGVKLHYT
Sbjct 1201 GFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDEDDSEPVLKGVKLHYT 1255
>sp|Q0Q475|SPIKE_BC279 Spike glycoprotein OS=Bat coronavirus 279/2005
OX=389167 GN=S PE=3 SV=1
Length=1241
Score = 1555 bits (4025), Expect = 0.0, Method: Composition-based stats.
Identities = 997/1261 (79%), Positives = 1101/1261 (87%), Gaps = 28/1261 (2%)
Query 1 MFIFLLFLTLTSGSDLDRCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFL 60
+ IF L +L + C P + +SS RGVYY D+IFRSD L+LTQD FL
Sbjct 3 VLIFALLFSLAKAQEG--CGIISRKPQPKMEKVSSSRRGVYYNDDIFRSDVLHLTQDYFL 60
Query 61 PFYSNVTGFHTIN------HTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSV 114
PF SN+T + ++N F NP++ F DG+YFAATEKSNV+RGW+FGS+ +N +QS
Sbjct 61 PFDSNLTQYFSLNIDSNKYTYFDNPILDFGDGVYFAATEKSNVIRGWIFGSSFDNTTQSA 120
Query 115 IIINNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSE 174
II+NNST+++IR CNF LC P + VSK GTQ + ++ +AFNCT++ + +F LD +
Sbjct 121 IIVNNSTHIIIRVCNFNLCKEPMYTVSK--GTQQSSWVYQSAFNCTYDRVEKSFQLDTAP 178
Query 175 KSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITNFRAI 234
K+GNFK LRE+VFKN+DGFL VY+ Y +++ R P+GF+ L+PI KLP GINIT++R +
Sbjct 179 KTGNFKDLREYVFKNRDGFLSVYQTYTAVNLPRGFPAGFSVLRPILKLPFGINITSYRVV 238
Query 235 LTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFE 294
+T FS + +AAY+VG LK TTFML ++ENGTITDAVDCSQNPLAELKC++K+F
Sbjct 239 MTMFSQFNSNFLPESAAYYVGNLKYTTFMLSFNENGTITDAVDCSQNPLAELKCTIKNFN 298
Query 295 IDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSV 354
+ KGIYQTSNFRV P+ +VVRFPNITN CPF +VFNA++FP+VYAWER KIS+CVADY+V
Sbjct 299 VSKGIYQTSNFRVTPTQEVVRFPNITNRCPFDKVFNASRFPNVYAWERTKISDCVADYTV 358
Query 355 LYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPD 414
LYNST FSTFKCYGVS +KL DLCF++VYAD+F+++ +VRQ+APG+TGVIADYNYKLPD
Sbjct 359 LYNSTSFSTFKCYGVSPSKLIDLCFTSVYADTFLIRSSEVRQVAPGETGVIADYNYKLPD 418
Query 415 DFMGCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNC 474
DF GCV+AWNT D Y YR R KL+PFERD+S+ N
Sbjct 419 DFTGCVIAWNTAQQDQG-----QYYYRSYRKEKLKPFERDLSSDE-------------NG 460
Query 475 YWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFNGLTG 534
+ L+ Y FY + + YQ RVVVLSFELLNAPATVCGPKLST L+KNQCVNFNFNGL G
Sbjct 461 VYTLSTYDFYPSIPVEYQATRVVVLSFELLNAPATVCGPKLSTQLVKNQCVNFNFNGLRG 520
Query 535 TGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEV 594
TGVLT SSKRFQ FQQFGRD SDFTDSVRDP+T EILDISPCSFGGVSVITPGTNASSEV
Sbjct 521 TGVLTTSSKRFQSFQQFGRDTSDFTDSVRDPQTLEILDISPCSFGGVSVITPGTNASSEV 580
Query 595 AVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGA 654
AVLYQDVNCTDV T+IHADQLTPAWR+YSTG NVFQTQAGCLIGAEHV+ SYECDIPIGA
Sbjct 581 AVLYQDVNCTDVPTSIHADQLTPAWRVYSTGVNVFQTQAGCLIGAEHVNASYECDIPIGA 640
Query 655 GICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMA 714
GICASYHT S+LRST QKSIVAYTMSLGA++SIAY+NN+IAIPTNFSIS+TTEVMPVS+A
Sbjct 641 GICASYHTASVLRSTGQKSIVAYTMSLGAENSIAYANNSIAIPTNFSISVTTEVMPVSIA 700
Query 715 KTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTP 774
KTSVDC MYICGDS EC+NLLLQYGSFCTQLNRAL+GIA EQD+NT+EVFAQVKQMYKTP
Sbjct 701 KTSVDCTMYICGDSLECSNLLLQYGSFCTQLNRALTGIAIEQDKNTQEVFAQVKQMYKTP 760
Query 775 TLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARDLICA 834
+K FGGFNFSQILPDP KPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDI+ARDLICA
Sbjct 761 AIKDFGGFNFSQILPDPSKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDISARDLICA 820
Query 835 QKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVT 894
QKFNGLTVLPPLLTD+MIAAYTAALVSGTATAGWTFGAG+ALQIPFAMQMAYRFNGIGVT
Sbjct 821 QKFNGLTVLPPLLTDEMIAAYTAALVSGTATAGWTFGAGSALQIPFAMQMAYRFNGIGVT 880
Query 895 QNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGA 954
QNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVN NAQALNTLVKQLSSNFGA
Sbjct 881 QNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNDNAQALNTLVKQLSSNFGA 940
Query 955 ISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSEC 1014
ISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSEC
Sbjct 941 ISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSEC 1000
Query 1015 VLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPRE 1074
VLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPRE
Sbjct 1001 VLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPRE 1060
Query 1075 GVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPLQPELDSFKEEL 1134
GVFV NGTSWFITQRNF+SPQIITTDNTFV+GNCDVVIGIINNTVYDPLQPELDSFKEEL
Sbjct 1061 GVFVSNGTSWFITQRNFYSPQIITTDNTFVAGNCDVVIGIINNTVYDPLQPELDSFKEEL 1120
Query 1135 DKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKW 1194
DKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKW
Sbjct 1121 DKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKW 1180
Query 1195 PWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDEDDSEPVLKGVKLHY 1254
PWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDEDDSEPVLKGVKLHY
Sbjct 1181 PWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDEDDSEPVLKGVKLHY 1240
Query 1255 T 1255
T
Sbjct 1241 T 1241
>sp|Q3I5J5|SPIKE_BCRP3 Spike glycoprotein OS=Bat coronavirus Rp3/2004
OX=349344 GN=S PE=1 SV=1
Length=1241
Score = 1548 bits (4008), Expect = 0.0, Method: Composition-based stats.
Identities = 992/1261 (79%), Positives = 1095/1261 (87%), Gaps = 26/1261 (2%)
Query 1 MFIFLLFLTLTSGSDLDRCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFL 60
M I +L + + C P Q +SS RGVYY D+IFRS+ L+LTQD FL
Sbjct 1 MKILILAFLASLAKAQEGCGIISRKPQPKMAQVSSSRRGVYYNDDIFRSNVLHLTQDYFL 60
Query 61 PFYSNVTGFHTIN------HTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSV 114
PF SN+T + ++N F NP++ F DG+YFAATEKSNV+RGW+FGST +N +QS
Sbjct 61 PFDSNLTQYFSLNVDSDRFTYFDNPILDFGDGVYFAATEKSNVIRGWIFGSTFDNTTQSA 120
Query 115 IIINNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSE 174
+I+NNST+++IR CNF LC P + VS+ G Q + ++ +AFNCT++ + +F LD +
Sbjct 121 VIVNNSTHIIIRVCNFNLCKEPMYTVSR--GAQQSSWVYQSAFNCTYDRVEKSFQLDTAP 178
Query 175 KSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITNFRAI 234
K+GNFK LRE+VFKN+DGFL VY+ Y +++ R LP GF+ L+PI KLP GINIT++R +
Sbjct 179 KTGNFKDLREYVFKNRDGFLSVYQTYTAVNLPRGLPIGFSVLRPILKLPFGINITSYRVV 238
Query 235 LTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFE 294
+ FS + +AAY+VG LK TTFML ++ENGTIT+A+DC+QNPLAELKC++K+F
Sbjct 239 MAMFSQTTSNFLPESAAYYVGNLKYTTFMLSFNENGTITNAIDCAQNPLAELKCTIKNFN 298
Query 295 IDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSV 354
+ KGIYQTSNFRV P+ +V+RFPNITN CPF +VFNAT+FP+VYAWER KIS+CVADY+V
Sbjct 299 VSKGIYQTSNFRVSPTQEVIRFPNITNRCPFDKVFNATRFPNVYAWERTKISDCVADYTV 358
Query 355 LYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPD 414
LYNST FSTFKCYGVS +KL DLCF++VYAD+F+++ +VRQ+APG+TGVIADYNYKLPD
Sbjct 359 LYNSTSFSTFKCYGVSPSKLIDLCFTSVYADTFLIRSSEVRQVAPGETGVIADYNYKLPD 418
Query 415 DFMGCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNC 474
DF GCV+AWNT D Y YR R KL+PFERD+S+ N
Sbjct 419 DFTGCVIAWNTAKQDQG-----QYYYRSHRKTKLKPFERDLSSDE-------------NG 460
Query 475 YWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFNGLTG 534
L+ Y FY + + YQ RVVVLSFELLNAPATVCGPKLST L+KNQCVNFNFNGL G
Sbjct 461 VRTLSTYDFYPSVPVAYQATRVVVLSFELLNAPATVCGPKLSTQLVKNQCVNFNFNGLKG 520
Query 535 TGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEV 594
TGVLT SSKRFQ FQQFGRD SDFTDSVRDP+T EILDISPCSFGGVSVITPGTNASSEV
Sbjct 521 TGVLTESSKRFQSFQQFGRDTSDFTDSVRDPQTLEILDISPCSFGGVSVITPGTNASSEV 580
Query 595 AVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGA 654
AVLYQDVNCTDV AIHADQLTPAWR+YSTG NVFQTQAGCLIGAEHV+ SYECDIPIGA
Sbjct 581 AVLYQDVNCTDVPAAIHADQLTPAWRVYSTGTNVFQTQAGCLIGAEHVNASYECDIPIGA 640
Query 655 GICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMA 714
GICASYHT S LRS QKSIVAYTMSLGA++SIAY+NN+IAIPTNFSIS+TTEVMPVSMA
Sbjct 641 GICASYHTASTLRSVGQKSIVAYTMSLGAENSIAYANNSIAIPTNFSISVTTEVMPVSMA 700
Query 715 KTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTP 774
KTSVDC MYICGDS EC+NLLLQYGSFCTQLNRALSGIA EQD+NT+EVFAQVKQMYKTP
Sbjct 701 KTSVDCTMYICGDSLECSNLLLQYGSFCTQLNRALSGIAIEQDKNTQEVFAQVKQMYKTP 760
Query 775 TLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARDLICA 834
+K FGGFNFSQILPDP KPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDI+ARDLICA
Sbjct 761 AIKDFGGFNFSQILPDPSKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDISARDLICA 820
Query 835 QKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVT 894
QKFNGLTVLPPLLTD+MIAAYTAALVSGTATAGWTFGAG+ALQIPFAMQMAYRFNGIGVT
Sbjct 821 QKFNGLTVLPPLLTDEMIAAYTAALVSGTATAGWTFGAGSALQIPFAMQMAYRFNGIGVT 880
Query 895 QNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGA 954
QNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGA
Sbjct 881 QNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGA 940
Query 955 ISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSEC 1014
ISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSEC
Sbjct 941 ISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSEC 1000
Query 1015 VLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPRE 1074
VLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPRE
Sbjct 1001 VLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPRE 1060
Query 1075 GVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPLQPELDSFKEEL 1134
GVFV NGTSWFITQRNF+SPQIITTDNTFV+G+CDVVIGIINNTVYDPLQPELDSFKEEL
Sbjct 1061 GVFVSNGTSWFITQRNFYSPQIITTDNTFVAGSCDVVIGIINNTVYDPLQPELDSFKEEL 1120
Query 1135 DKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKW 1194
DKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKW
Sbjct 1121 DKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKW 1180
Query 1195 PWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDEDDSEPVLKGVKLHY 1254
PWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDEDDSEPVLKGVKLHY
Sbjct 1181 PWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDEDDSEPVLKGVKLHY 1240
Query 1255 T 1255
T
Sbjct 1241 T 1241
>sp|P0DTC2|SPIKE_SARS2 Spike glycoprotein OS=Severe acute respiratory
syndrome coronavirus 2 OX=2697049 GN=S PE=1 SV=1
Length=1273
Score = 1546 bits (4002), Expect = 0.0, Method: Composition-based stats.
Identities = 971/1277 (76%), Positives = 1108/1277 (87%), Gaps = 26/1277 (2%)
Query 1 MFIFLLFLTLTSGSDLDRCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFL 60
MF+FL+ L L S ++ T P YT S RGVYYPD++FRS L+ TQDLFL
Sbjct 1 MFVFLVLLPLVSSQCVNLTTRTQ--LPPAYTN--SFTRGVYYPDKVFRSSVLHSTQDLFL 56
Query 61 PFYSNVTGFHTIN-------HTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQS 113
PF+SNVT FH I+ F NPV+PF DG+YFA+TEKSN++RGW+FG+T+++K+QS
Sbjct 57 PFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQS 116
Query 114 VIIINNSTNVVIRACNFELCDNPFFAV----SKPMGTQTHTMIFDNAFNCTFEYISDAFS 169
++I+NN+TNVVI+ C F+ C++PF V + ++ ++ +A NCTFEY+S F
Sbjct 117 LLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFL 176
Query 170 LDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINIT 229
+D+ K GNFK+LREFVFKN DG+ +Y + PI++VRDLP GF+ L+P+ LP+GINIT
Sbjct 177 MDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINIT 236
Query 230 NFRAIL----TAFSPAQDI--WGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPL 283
F+ +L + +P W AAAY+VGYL+P TF+LKY+ENGTITDAVDC+ +PL
Sbjct 237 RFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPL 296
Query 284 AELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFNATKFPSVYAWERK 343
+E KC++KSF ++KGIYQTSNFRV P+ +VRFPNITNLCPFGEVFNAT+F SVYAW RK
Sbjct 297 SETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRK 356
Query 344 KISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTG 403
+ISNCVADYSVLYNS FSTFKCYGVS TKLNDLCF+NVYADSFV++GD+VRQIAPGQTG
Sbjct 357 RISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTG 416
Query 404 VIADYNYKLPDDFMGCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPD 463
IADYNYKLPDDF GCV+AWN+ N+D+ GNYNY YR R L+PFERDIS +
Sbjct 417 KIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAG 476
Query 464 GKPCTP-PALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKN 522
PC NCY+PL YGF T G+GYQPYRVVVLSFELL+APATVCGPK ST+L+KN
Sbjct 477 STPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKN 536
Query 523 QCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVS 582
+CVNFNFNGLTGTGVLT S+K+F PFQQFGRD++D TD+VRDP+T EILDI+PCSFGGVS
Sbjct 537 KCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVS 596
Query 583 VITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIGAEHV 642
VITPGTN S++VAVLYQDVNCT+V AIHADQLTP WR+YSTG+NVFQT+AGCLIGAEHV
Sbjct 597 VITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHV 656
Query 643 DTSYECDIPIGAGICASYHT----VSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPT 698
+ SYECDIPIGAGICASY T RS + +SI+AYTMSLGA++S+AYSNN+IAIPT
Sbjct 657 NNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPT 716
Query 699 NFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDR 758
NF+IS+TTE++PVSM KTSVDC MYICGDSTEC+NLLLQYGSFCTQLNRAL+GIA EQD+
Sbjct 717 NFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDK 776
Query 759 NTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQ 818
NT+EVFAQVKQ+YKTP +K FGGFNFSQILPDP KP+KRSFIEDLLFNKVTLADAGF+KQ
Sbjct 777 NTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQ 836
Query 819 YGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQI 878
YG+CLGDI ARDLICAQKFNGLTVLPPLLTD+MIA YT+AL++GT T+GWTFGAGAALQI
Sbjct 837 YGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQI 896
Query 879 PFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNA 938
PFAMQMAYRFNGIGVTQNVLYENQK IANQFN AI +IQ+SL++T++ALGKLQDVVNQNA
Sbjct 897 PFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNA 956
Query 939 QALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAA 998
QALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAA
Sbjct 957 QALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAA 1016
Query 999 EIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFT 1058
EIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQ+APHGVVFLHVTYVP+QE+NFT
Sbjct 1017 EIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFT 1076
Query 1059 TAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNT 1118
TAPAICH+GKA+FPREGVFV NGT WF+TQRNF+ PQIITTDNTFVSGNCDVVIGI+NNT
Sbjct 1077 TAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNT 1136
Query 1119 VYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNES 1178
VYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNES
Sbjct 1137 VYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNES 1196
Query 1179 LIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKF 1238
LIDLQELGKYEQYIKWPWY+WLGFIAGLIAIVMVTI+LCCMTSCCSCLKG CSCGSCCKF
Sbjct 1197 LIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKF 1256
Query 1239 DEDDSEPVLKGVKLHYT 1255
DEDDSEPVLKGVKLHYT
Sbjct 1257 DEDDSEPVLKGVKLHYT 1273
>sp|Q3LZX1|SPIKE_BCHK3 Spike glycoprotein OS=Bat coronavirus HKU3
OX=442736 GN=S PE=3 SV=1
Length=1242
Score = 1542 bits (3993), Expect = 0.0, Method: Composition-based stats.
Identities = 985/1261 (78%), Positives = 1098/1261 (87%), Gaps = 27/1261 (2%)
Query 1 MFIFLLFLTLTSGSDLDRCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFL 60
+ IF L + C P Q +SS RGVYY D+IFRSD L+LTQD FL
Sbjct 3 ILIFAFLANLAKAQEG--CGIISRKPQPKMAQVSSSRRGVYYNDDIFRSDVLHLTQDYFL 60
Query 61 PFYSNVTGFHTIN------HTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSV 114
PF SN+T + ++N F NP++ F DG+YFAATEKSNV+RGW+FGS+ +N +QS
Sbjct 61 PFDSNLTQYFSLNVDSDRYTYFDNPILDFGDGVYFAATEKSNVIRGWIFGSSFDNTTQSA 120
Query 115 IIINNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSE 174
+I+NNST+++IR CNF LC P + VS+ GTQ + ++ +AFNCT++ + +F LD +
Sbjct 121 VIVNNSTHIIIRVCNFNLCKEPMYTVSR--GTQQNAWVYQSAFNCTYDRVEKSFQLDTTP 178
Query 175 KSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITNFRAI 234
K+GNFK LRE+VFKN+DGFL VY+ Y +++ R LP+GF+ LKPI KLP GINIT++R +
Sbjct 179 KTGNFKDLREYVFKNRDGFLSVYQTYTAVNLPRGLPTGFSVLKPILKLPFGINITSYRVV 238
Query 235 LTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFE 294
+ FS + +AAY+VG LK +TFML+++ENGTITDAVDCSQNPLAELKC++K+F
Sbjct 239 MAMFSQTTSNFLPESAAYYVGNLKYSTFMLRFNENGTITDAVDCSQNPLAELKCTIKNFN 298
Query 295 IDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSV 354
+DKGIYQTSNFRV P+ +V+RFPNITN CPF +VFNAT+FP+VYAWER KIS+CVADY+V
Sbjct 299 VDKGIYQTSNFRVSPTQEVIRFPNITNRCPFDKVFNATRFPNVYAWERTKISDCVADYTV 358
Query 355 LYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPD 414
LYNST FSTFKCYGVS +KL DLCF++VYAD+F+++ +VRQ+APG+TGVIADYNYKLPD
Sbjct 359 LYNSTSFSTFKCYGVSPSKLIDLCFTSVYADTFLIRSSEVRQVAPGETGVIADYNYKLPD 418
Query 415 DFMGCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNC 474
DF GCV+AWNT D NY YR R KL+PFERD+S+ N
Sbjct 419 DFTGCVIAWNTAKHDTG-----NYYYRSHRKTKLKPFERDLSSDD------------GNG 461
Query 475 YWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFNGLTG 534
+ L+ Y F + YQ RVVVLSFELLNAPATVCGPKLST+L+KNQCVNFNFNGL G
Sbjct 462 VYTLSTYDFNPNVPVAYQATRVVVLSFELLNAPATVCGPKLSTELVKNQCVNFNFNGLKG 521
Query 535 TGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEV 594
TGVLT SSKRFQ FQQFGRD SDFTDSVRDP+T EILDISPCSFGGVSVITPGTNASSEV
Sbjct 522 TGVLTSSSKRFQSFQQFGRDTSDFTDSVRDPQTLEILDISPCSFGGVSVITPGTNASSEV 581
Query 595 AVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGA 654
AVLYQDVNCTDV TAI ADQLTPAWR+YSTG NVFQTQAGCLIGAEHV+ SYECDIPIGA
Sbjct 582 AVLYQDVNCTDVPTAIRADQLTPAWRVYSTGVNVFQTQAGCLIGAEHVNASYECDIPIGA 641
Query 655 GICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMA 714
GICASYHT S+LRST QKSIVAYTMSLGA++SIAY+NN+IAIPTNFSIS+TTEVMPVSMA
Sbjct 642 GICASYHTASVLRSTGQKSIVAYTMSLGAENSIAYANNSIAIPTNFSISVTTEVMPVSMA 701
Query 715 KTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTP 774
KT+VDC MYICGDS EC+NLLLQYGSFCTQLNRAL+GIA EQD+NT+EVFAQVKQMYKTP
Sbjct 702 KTAVDCTMYICGDSLECSNLLLQYGSFCTQLNRALTGIAIEQDKNTQEVFAQVKQMYKTP 761
Query 775 TLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARDLICA 834
+K FGGFNFSQILPDP KPTKRSFIEDLLFNKVTLADAGFMKQYG+CLGD++ARDLICA
Sbjct 762 AIKDFGGFNFSQILPDPSKPTKRSFIEDLLFNKVTLADAGFMKQYGDCLGDVSARDLICA 821
Query 835 QKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVT 894
QKFNGLTVLPPLLTD+M+AAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVT
Sbjct 822 QKFNGLTVLPPLLTDEMVAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVT 881
Query 895 QNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGA 954
QNVLYENQK IANQFN AI +IQESL++T++ALGKLQDVVNQNAQALNTLVKQLSSNFGA
Sbjct 882 QNVLYENQKLIANQFNSAIGKIQESLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGA 941
Query 955 ISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSEC 1014
ISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSEC
Sbjct 942 ISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSEC 1001
Query 1015 VLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPRE 1074
VLGQSKRVDFCGKGYHLMSFPQ+APHGVVFLHVTYVPSQE+NFTTAPAICHEGKAYFPRE
Sbjct 1002 VLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPSQEKNFTTAPAICHEGKAYFPRE 1061
Query 1075 GVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPLQPELDSFKEEL 1134
GVFV NGTSWFITQRNF+SPQ+ITTDNTFVSGNCDVVIGIINNTVYDPLQPELDSFKEEL
Sbjct 1062 GVFVSNGTSWFITQRNFYSPQLITTDNTFVSGNCDVVIGIINNTVYDPLQPELDSFKEEL 1121
Query 1135 DKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKW 1194
DKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKW
Sbjct 1122 DKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKW 1181
Query 1195 PWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDEDDSEPVLKGVKLHY 1254
PWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDEDDSEPVLKGVKLHY
Sbjct 1182 PWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDEDDSEPVLKGVKLHY 1241
Query 1255 T 1255
T
Sbjct 1242 T 1242
>sp|P11224|SPIKE_CVMA5 Spike glycoprotein OS=Murine coronavirus
(strain A59) OX=11142 GN=S PE=1 SV=2
Length=1324
Score = 1375 bits (3559), Expect = 0.0, Method: Composition-based stats.
Identities = 397/1361 (29%), Positives = 618/1361 (45%), Gaps = 148/1361 (11%)
Query 1 MFIFLLFLTLTSGSDLD-RCTTF-----DDVQAPNYTQHT---SSMRGVYYP-DEIFRSD 50
+F+F+LFL G D RC +V AP+ + T S G YY D ++ +
Sbjct 2 LFVFILFLPSCLGYIGDFRCIQLVNSNGANVSAPSISTETVEVSQGLGTYYVLDRVYLNA 61
Query 51 TLYLTQDLFLPF----YSNVT--GFHTINHTFGNP--VIPFKDGIYFAATE--KSNVVRG 100
TL LT + P + N+ G ++++ ++ P + F DGI FA + K++ G
Sbjct 62 TLLLTG--YYPVDGSKFRNLALRGTNSVSLSWFQPPYLNQFNDGI-FAKVQNLKTSTPSG 118
Query 101 W-------VFGSTMNNKSQSVIIINNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIF 153
V GS S +V+I + ++ C + +C P+ +
Sbjct 119 ATAYFPTIVIGSLFGYTSYTVVIEPYNGVIMASVCQYTICQLPYTDCKPNTNGNKLIGFW 178
Query 154 DNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGF 213
+ F+L+V+ + F F G Y Y +P
Sbjct 179 HTDVKPPICVLKRNFTLNVNADA------FYFHFYQHGGTFYAYYADKP----------- 221
Query 214 NTLKPIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTIT 273
+ +F + +G +T + + +P T A Y+V L ++ +++ G IT
Sbjct 222 SATTFLFSVYIGDILTQYYVLPFICNPTAG--STFAPRYWVTPLVKRQYLFNFNQKGVIT 279
Query 274 DAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFNATK 333
AVDC+ + +E+KC +S G+Y+ S + V P G V R C E A
Sbjct 280 SAVDCASSYTSEIKCKTQSMLPSTGVYELSGYTVQPVGVVYRRVANLPACNIEEWLTARS 339
Query 334 FPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDD 393
PS WERK NC + S L + C + A+K+ CF ++ D F V
Sbjct 340 VPSPLNWERKTFQNCNFNLSSLLRYVQAESLFCNNIDASKVYGRCFGSISVDKFAVPRSR 399
Query 394 VRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDAT----STGNYNYKYRYLRHGKLR 449
+ G +G + NYK+ C L + + T + ++N +Y + G
Sbjct 400 QVDLQLGNSGFLQTANYKIDTAATSCQLHYTLPKNNVTINNHNPSSWNRRYGFNDAGVFG 459
Query 450 PFERDI-----------SNVPFSPD--GKPCT---------------------------- 468
+ D+ S P + PCT
Sbjct 460 KNQHDVVYAQQCFTVRSSYCPCAQPDIVSPCTTQTKPKSAFVNVGDHCEGLGVLEDNCGN 519
Query 469 -PPALNCYWPLNDY-GFYTTTGIGYQPYRVVVLSFELLNA--PATVCGPKL---STDLIK 521
P C N + G+ T + R + + LLN T C L +T+++
Sbjct 520 ADPHKGCICANNSFIGWSHDTCLVND--RCQIFANILLNGINSGTTCSTDLQLPNTEVVT 577
Query 522 NQCVNFNFNGLTGTGVLTP-SSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGG 580
CV ++ G+TG GV + + +Q DV+ + RD T++ I C G
Sbjct 578 GICVKYDLYGITGQGVFKEVKADYYNSWQTLLYDVNGNLNGFRDLTTNKTYTIRSCYSGR 637
Query 581 VSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIGAE 640
VS + E A+LY+++NC+ V + + + P N F + GC++ A+
Sbjct 638 VSAAF--HKDAPEPALLYRNINCSYVFSNNISREENPL--------NYFDSYLGCVVNAD 687
Query 641 HVD--TSYECDIPIGAGICASYHTVSLLRST-----SQKSIVAYTMSLGADSSIAYSN-N 692
+ CD+ +GAG+C Y + + YT L DS +
Sbjct 688 NRTDEALPNCDLRMGAGLCVDYSKSRRAHRSVSTGYRLTTFEPYTPMLVNDSVQSVDGLY 747
Query 693 TIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGI 752
+ IPTNF+I E + K ++DC ++CGD+T C L++YGSFC +N L+ +
Sbjct 748 EMQIPTNFTIGHHEEFIQTRSPKVTIDCAAFVCGDNTACRQQLVEYGSFCVNVNAILNEV 807
Query 753 AAEQDRNTREVFAQVKQMYKTPTLKYFG------GFNFSQILP-----------DPLKPT 795
D +V + + Q + G NFS +L P
Sbjct 808 NNLLDNMQLQVASALMQGVTISSRLPDGISGPIDDINFSPLLGCIGSTCAEDGNGPSAIR 867
Query 796 KRSFIEDLLFNKVTLADAGFMKQYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAY 855
RS IEDLLF+KV L+D GF++ Y C G RDL+C Q FNG+ VLPP+L++ I+ Y
Sbjct 868 GRSAIEDLLFDKVKLSDVGFVEAYNNCTGGQEVRDLLCVQSFNGIKVLPPVLSESQISGY 927
Query 856 TAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQ 915
T + W+ AG +PF++ + YR NG+GVT NVL ENQK IA+ FN A+
Sbjct 928 TTGATAAAMFPPWSAAAG----VPFSLSVQYRINGLGVTMNVLSENQKMIASAFNNALGA 983
Query 916 IQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQI 975
IQ+ T++ALGK+Q VVN NA+ALN L+ QLS+ FGAIS+ L +IL+RL+ VEA+ QI
Sbjct 984 IQDGFDATNSALGKIQSVVNANAEALNNLLNQLSNRFGAISASLQEILTRLEAVEAKAQI 1043
Query 976 DRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFP 1035
DRLI GRL +L Y+++QL + I+ SA A K++ECV Q+ R++FCG G H++S
Sbjct 1044 DRLINGRLTALNAYISKQLSDSTLIKVSAAQAIEKVNECVKSQTTRINFCGNGNHILSLV 1103
Query 1036 QAAPHGVVFLHVTYVPSQERNFTTAPAICHEG-KAYFPREGVFVFNGTSWFITQRNFFSP 1094
Q AP+G+ F+H +YVP +P +C G + P+ G FV + W T +++ P
Sbjct 1104 QNAPYGLYFIHFSYVPISFTTANVSPGLCISGDRGLAPKAGYFVQDDGEWKFTGSSYYYP 1163
Query 1095 QIITTDNTFVSGNCDVVIGIINNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLG-DISG 1153
+ IT N+ + +C V + P FKEELDK+FKN TS DL D
Sbjct 1164 EPITDKNSVIMSSCAVNYTKAPEVFLNTSIPNPPDFKEELDKWFKNQTSIAPDLSLDFEK 1223
Query 1154 INASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVT 1213
+N +++++ E++R+ + K LNES I+L+E+G YE Y+KWPWYVWL + GL + +
Sbjct 1224 LNVTLLDLTYEMNRIQDAIKKLNESYINLKEVGTYEMYVKWPWYVWL--LIGLAGVAVCV 1281
Query 1214 ILLCCMTSCCSCLKGACSCGSCCKFDEDDSE-PVLKGVKLH 1253
+L CG+CC + V+ + H
Sbjct 1282 LLFFICCCTGCGSCCFKKCGNCCDEYGGHQDSIVIHNISSH 1322
>sp|P11225|SPIKE_CVMJH Spike glycoprotein OS=Murine coronavirus
(strain JHM) OX=11144 GN=S PE=1 SV=1
Length=1235
Score = 1360 bits (3521), Expect = 0.0, Method: Composition-based stats.
Identities = 399/1315 (30%), Positives = 610/1315 (46%), Gaps = 145/1315 (11%)
Query 1 MFIFLLFLTLTSGSDLD-RCTTF-----DDVQAPNYTQHT---SSMRGVYYP-DEIFRSD 50
+F+F+L L G D RC ++ AP+ + S RG YY D ++ +
Sbjct 2 LFVFILLLPSCLGYIGDFRCIQTVNYNGNNASAPSISTEAVDVSKGRGTYYVLDRVYLNA 61
Query 51 TLYLTQDLFLPF----YSNV--TGFHTINHTFGNP--VIPFKDGIYFAATE--KSNVVRG 100
TL LT + P Y N+ TG +T++ T+ P + F DGI FA + K+N G
Sbjct 62 TLLLTG--YYPVDGSNYRNLALTGTNTLSLTWFKPPFLSEFNDGI-FAKVQNLKTNTPTG 118
Query 101 W-------VFGSTMNNKSQSVIIINNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIF 153
V GS N S +V++ + ++ C + +C P+ +
Sbjct 119 ATSYFPTIVIGSLFGNTSYTVVLEPYNNIIMASVCTYTICQLPYTPCKPNTNGNRVIGFW 178
Query 154 DNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGF 213
+ F+ +V+ F F + G Y Y +P
Sbjct 179 HTDVKPPICLLKRNFTFNVNAP------WLYFHFYQQGGTFYAYYADKP----------- 221
Query 214 NTLKPIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTIT 273
+ +F + +G +T + + +P T A Y+V L ++ ++E G IT
Sbjct 222 SATTFLFSVYIGDILTQYFVLPFICTPTAG--STLAPLYWVTPLLKRQYLFNFNEKGVIT 279
Query 274 DAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVR-FPNITNLCPFGEVFNAT 332
AVDC+ + ++E+KC +S G+Y S + V P G V R PN+ + C E A
Sbjct 280 SAVDCASSYISEIKCKTQSLLPSTGVYDLSGYTVQPVGVVYRRVPNLPD-CKIEEWLTAK 338
Query 333 KFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGD 392
PS WER+ NC + S L + C + A+K+ +CF +V D F +
Sbjct 339 SVPSPLNWERRTFQNCNFNLSSLLRYVQAESLSCNNIDASKVYGMCFGSVSVDKFAIPRS 398
Query 393 DVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFE 452
+ G +G + NYK+ C L ++ + T NYN R+G
Sbjct 399 RQIDLQIGNSGFLQTANYKIDTAATSCQLYYSLPKNNVT-INNYNPSSWNRRYG------ 451
Query 453 RDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNA--PATV 510
+ +ND R + + LLN T
Sbjct 452 -----------------------FKVND--------------RCQIFANILLNGINSGTT 474
Query 511 CGPKL---STDLIKNQCVNFNFNGLTGTGVLTP-SSKRFQPFQQFGRDVSDFTDSVRDPK 566
C L +T++ CV ++ G+TG GV + + +Q DV+ + RD
Sbjct 475 CSTDLQLPNTEVATGVCVRYDLYGITGQGVFKEVKADYYNSWQALLYDVNGNLNGFRDLT 534
Query 567 TSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGN 626
T++ I C G VS + E A+LY+++NC+ V T + + P
Sbjct 535 TNKTYTIRSCYSGRVSAAY--HKEAPEPALLYRNINCSYVFTNNISREENPL-------- 584
Query 627 NVFQTQAGCLIGAEHVD--TSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYT----MS 680
N F + GC++ A++ C++ +GAG+C Y R + T M
Sbjct 585 NYFDSYLGCVVNADNRTDEALPNCNLRMGAGLCVDYSKSRRARRSVSTGYRLTTFEPYMP 644
Query 681 LGADSSIAYSN--NTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQY 738
+ + S+ + IPTNF+I E + + K ++DC ++CGD+ C L++Y
Sbjct 645 MLVNDSVQSVGGLYEMQIPTNFTIGHHEEFIQIRAPKVTIDCAAFVCGDNAACRQQLVEY 704
Query 739 GSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFG------GFNFSQILP--- 789
GSFC +N L+ + D +V + + Q + G NFS +L
Sbjct 705 GSFCDNVNAILNEVNNLLDNMQLQVASALMQGVTISSRLPDGISGPIDDINFSPLLGCIG 764
Query 790 --------DPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARDLICAQKFNGLT 841
P RS IEDLLF+KV L+D GF++ Y C G RDL+C Q FNG+
Sbjct 765 STCAEDGNGPSAIRGRSAIEDLLFDKVKLSDVGFVEAYNNCTGGQEVRDLLCVQSFNGIK 824
Query 842 VLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYEN 901
VLPP+L++ I+ YTA + WT AG +PF++ + YR NG+GVT NVL EN
Sbjct 825 VLPPVLSESQISGYTAGATAAAMFPPWTAAAG----VPFSLNVQYRINGLGVTMNVLSEN 880
Query 902 QKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLND 961
QK IA+ FN A+ IQE T++ALGK+Q VVN NA+ALN L+ QLS+ FGAIS+ L +
Sbjct 881 QKMIASAFNNALGAIQEGFDATNSALGKIQSVVNANAEALNNLLNQLSNRFGAISASLQE 940
Query 962 ILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKR 1021
IL+RLD VEA+ QIDRLI GRL +L Y+++QL + I+ SA A K++ECV Q+ R
Sbjct 941 ILTRLDAVEAKAQIDRLINGRLTALNAYISKQLSDSTLIKFSAAQAIEKVNECVKSQTTR 1000
Query 1022 VDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEG-KAYFPREGVFVFN 1080
++FCG G H++S Q AP+G+ F+H +YVP+ + +P +C G + P+ G FV +
Sbjct 1001 INFCGNGNHILSLVQNAPYGLCFIHFSYVPTSFKTANVSPGLCISGDRGLAPKAGYFVQD 1060
Query 1081 GTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPLQPELDSFKEELDKYFKN 1140
W T N++ P+ IT N+ +C V + P L FKEELDK+FKN
Sbjct 1061 NGEWKFTGSNYYYPEPITDKNSVAMISCAVNYTKAPEVFLNNSIPNLPDFKEELDKWFKN 1120
Query 1141 HTSPDVDLG-DISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVW 1199
TS DL D +N + +++ E++R+ + K LNES I+L+E+G YE Y+KWPWYVW
Sbjct 1121 QTSIAPDLSLDFEKLNVTFLDLTYEMNRIQDAIKKLNESYINLKEVGTYEMYVKWPWYVW 1180
Query 1200 LGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDEDDSE-PVLKGVKLH 1253
L + GL + + +L CGSCC + V+ + H
Sbjct 1181 L--LIGLAGVAVCVLLFFICCCTGCGSCCFRKCGSCCDEYGGHQDSIVIHNISAH 1233
>sp|P36334|SPIKE_CVHOC Spike glycoprotein OS=Human coronavirus
OC43 OX=31631 GN=S PE=1 SV=1
Length=1353
Score = 1271 bits (3290), Expect = 0.0, Method: Composition-based stats.
Identities = 394/1401 (28%), Positives = 606/1401 (43%), Gaps = 206/1401 (15%)
Query 1 MFIFLLF-LTLTSGSDLD-RCTTFD----DVQAPNYTQHTSS---MRGVYYPDEIFRSDT 51
MF+ LL L D +CT+ + D P + T G YY D
Sbjct 1 MFLILLISLPTAFAVIGDLKCTSDNINDKDTGPPPISTDTVDVTNGLGTYYV-----LDR 55
Query 52 LYLTQDLFLPFYSNVTGFHTINHTFGNPVI------------PFKDGIYFAATEKSNVVR 99
+YL LFL Y +G N V+ F +GI FA + + V++
Sbjct 56 VYLNTTLFLNGYYPTSGSTYRNMALKGSVLLSRLWFKPPFLSDFINGI-FAKVKNTKVIK 114
Query 100 GWV---------FGSTMNNKSQSVIIINNSTN------------VVIRACNFELCDNPFF 138
V GST N S SV++ + N + + C + +C+ P
Sbjct 115 DRVMYSEFPAITIGSTFVNTSYSVVVQPRTINSTQDGDNKLQGLLEVSVCQYNMCEYPQT 174
Query 139 AVSKPMGTQTHTMIF--DNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYV 196
+G + +C ++ F+ DV+ F F + G Y
Sbjct 175 ICHPNLGNHRKELWHLDTGVVSCLYK---RNFTYDVNAD------YLYFHFYQEGGTFYA 225
Query 197 YKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGY 256
Y + VV K +F + LG+ ++++ + + + Y+V
Sbjct 226 Y--FTDTGVVT---------KFLFNVYLGMALSHYYVMPLTCNSKLTL------EYWVTP 268
Query 257 LKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRF 316
L ++L ++++G I +A DC + ++E+KC +S G+Y+ + + V P DV R
Sbjct 269 LTSRQYLLAFNQDGIIFNAEDCMSDFMSEIKCKTQSIAPPTGVYELNGYTVQPIADVYRR 328
Query 317 -PNITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLN 375
PN+ N C N PS WERK SNC + S L + +F C + A K+
Sbjct 329 KPNLPN-CNIEAWLNDKSVPSPLNWERKTFSNCNFNMSSLMSFIQADSFTCNNIDAAKIY 387
Query 376 DLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDAT---- 431
+CFS++ D F + + G G + +NY++ C L +N + +
Sbjct 388 GMCFSSITIDKFAIPNGRKVDLQLGNLGYLQSFNYRIDTTATSCQLYYNLPAANVSVSRF 447
Query 432 STGNYNYKYRYLRHGKLRP-----------------FERDISNVPFSPDGK-----PCTP 469
+ +N ++ ++ +P F+ + P +G P
Sbjct 448 NPSTWNKRFGFIEDSVFKPRPAGVLTNHDVVYAQHCFKAPKNFCPCKLNGSCVGSGPGKN 507
Query 470 PALNCYWPLNDY---------GFYTTTGIGYQPYRVVVLSFE-----------LLNAPAT 509
+ +Y T TG P ++ +
Sbjct 508 NGIGTCPAGTNYLTCDNLCTPDPITFTGTYKCPQTKSLVGIGEHCSGLAVKSDYCGGNSC 567
Query 510 VCGPKLSTDLIKNQCV---------NFNFN----GLTGTGVLTPSSKRFQPFQQFGRDVS 556
C P+ + C+ NF + GLT + L ++ D+
Sbjct 568 TCRPQAFLGWSADSCLQGDKCNIFANFILHDVNSGLTCSTDLQKANTDIILGVCVNYDLY 627
Query 557 DFT---------------------------DSVRDPKTSEILDISPCSFGGVSVITPGTN 589
RD + I C G VS
Sbjct 628 GILGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYIINRTFMIRSCYSGRVSAAFHAN- 686
Query 590 ASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIGAEHVD--TSYE 647
SSE A+L++++ C V QL P N F + GC++ A + +
Sbjct 687 -SSEPALLFRNIKCNYVFNNSLTRQLQPI--------NYFDSYLGCVVNAYNSTAISVQT 737
Query 648 CDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNT---------IAIPT 698
CD+ +G+G C Y S R + Y + ++ N++ I IP+
Sbjct 738 CDLTVGSGYCVDY---SKNRRSRGAITTGYRFTNFEPFTVNSVNDSLEPVGGLYEIQIPS 794
Query 699 NFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDR 758
F+I E + S K ++DC ++CGD C + L++YGSFC +N L+ + D
Sbjct 795 EFTIGNMVEFIQTSSPKVTIDCAAFVCGDYAACKSQLVEYGSFCDNINAILTEVNELLDT 854
Query 759 NTREVFAQVKQMYKTPTLKYFG------GFNFSQILP----DPLKPTKRSFIEDLLFNKV 808
+V + T G NFS +L + K + RS IEDLLF+KV
Sbjct 855 TQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSECSKASSRSAIEDLLFDKV 914
Query 809 TLADAGFMKQYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGW 868
L+D GF++ Y C G RDLIC Q + G+ VLPPLL+++ I+ YT A S + W
Sbjct 915 KLSDVGFVEAYNNCTGGAEIRDLICVQSYKGIKVLPPLLSENQISGYTLAATSASLFPPW 974
Query 869 TFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALG 928
T AG +PF + + YR NG+GVT +VL +NQK IAN FN A+ IQE T++AL
Sbjct 975 TAAAG----VPFYLNVQYRINGLGVTMDVLSQNQKLIANAFNNALYAIQEGFDATNSALV 1030
Query 929 KLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQT 988
K+Q VVN NA+ALN L++QLS+ FGAIS+ L +ILSRLD +EAE QIDRLI GRL +L
Sbjct 1031 KIQAVVNANAEALNNLLQQLSNRFGAISASLQEILSRLDALEAEAQIDRLINGRLTALNA 1090
Query 989 YVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVT 1048
YV+QQL + ++ SA A K++ECV QS R++FCG G H++S Q AP+G+ F+H +
Sbjct 1091 YVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNHIISLVQNAPYGLYFIHFS 1150
Query 1049 YVPSQERNFTTAPAICHEG-KAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGN 1107
YVP++ +P +C G + P+ G FV +W T ++ P+ IT +N V
Sbjct 1151 YVPTKYVTARVSPGLCIAGDRGIAPKSGYFVNVNNTWMYTGSGYYYPEPITENNVVVMST 1210
Query 1108 CDVVIGIINNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDR 1167
C V + + P L FKEELD++FKN TS DL + IN + +++Q E++R
Sbjct 1211 CAVNYTKAPYVMLNTSIPNLPDFKEELDQWFKNQTSVAPDL-SLDYINVTFLDLQVEMNR 1269
Query 1168 LNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLK 1227
L E K LN+S I+L+++G YE Y+KWPWYVWL + L + M+ +L
Sbjct 1270 LQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWL--LICLAGVAMLVLLFFICCCTGCGTS 1327
Query 1228 GACSCGSCCKFDEDDSEPVLK 1248
CG CC E V+K
Sbjct 1328 CFKKCGGCCDDYTGYQELVIK 1348
>sp|Q9IKD1|SPIKE_CVRSD Spike glycoprotein OS=Rat coronavirus (strain
681) OX=33740 GN=S PE=3 SV=1
Length=1360
Score = 1196 bits (3093), Expect = 0.0, Method: Composition-based stats.
Identities = 377/1386 (27%), Positives = 588/1386 (42%), Gaps = 162/1386 (12%)
Query 1 MFIFLLFLTLTSGSDLD-RC-----TTFDDVQAPNYTQHT---SSMRGVYYP-DEIFRSD 50
+F+FL L G D RC T + +AP+ + S G YY D ++ +
Sbjct 2 LFVFLTLLPSCLGYIGDFRCINLVNTRISNARAPSVSTEVVDVSKGLGTYYVLDRVYLNA 61
Query 51 TLYLTQDLFLP----FYSNVT--GFHTINHTFGNP--VIPFKDGIYFAATE-KSNVVRG- 100
TL LT + P Y N+ G +T++ + P + F DGIY K+++ G
Sbjct 62 TLLLTG--YYPVDGSMYRNMALMGTNTLSLNWFEPPFLSEFNDGIYAKVKNLKASLPIGS 119
Query 101 ------WVFGSTMNNKSQSVIIINNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFD 154
+ GS N S +V++ + ++ C + +C P G T +
Sbjct 120 ASYFPTIIIGSNFVNTSYTVVLEPYNGIIMASICQYTICQLPHTDCKPNTGGNTLIGFWH 179
Query 155 NAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFN 214
+ F+ +V+ + F F + G Y Y +
Sbjct 180 TDLRPPVCILKRNFTFNVNAE------WLYFHFYQQGGTFYAYYADV-----------SS 222
Query 215 TLKPIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITD 274
+F +G +T + + SP G S+ Y+V L ++ +++ G IT
Sbjct 223 ATTFLFSSYIGAVLTQYFVLPYMCSPTTS--GVSSPQYWVTPLVKRQYLFNFNQKGIITS 280
Query 275 AVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFNATKF 334
AVDC+ + +E+KC +S + G+Y S + V P G V R C E A
Sbjct 281 AVDCASSYTSEIKCKTQSMNPNTGVYDLSGYTVQPVGLVYRRVRNLPDCKIEEWLAANTV 340
Query 335 PSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDV 394
PS WERK NC + S L + C + A+K+ +CF ++ D F +
Sbjct 341 PSPLNWERKTFQNCNFNLSSLLRFVQAESLSCSNIDASKVYGMCFGSISIDKFAIPNSRR 400
Query 395 RQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDAT----STGNYNYKYRYLRHGKLRP 450
+ G++G++ +NYK+ C L ++ + T + ++N +Y +
Sbjct 401 VDLQLGKSGLLQSFNYKIDTRATSCQLYYSLAQDNVTVINHNPSSWNRRYGFNDVATFHS 460
Query 451 FERDISN--VPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYR-VVVLSFELLNAP 507
E D++ F+ C + + + R V + +
Sbjct 461 GEHDVAYAEACFTVGASYCPCAKPSTVYSCVTGKPKSANCPTGTSNRECNVQASGFKSKC 520
Query 508 ATVCGPKLSTDLIKNQCVNFNFNGL----TGTGVLTP----------SSKRFQPFQQFGR 553
C P T + G+ G G+L S+ F +
Sbjct 521 DCTCNPSPLTTYDPRCLQARSMLGVGDHCEGLGILEDKCGGSNICNCSADAFVGWAMDSC 580
Query 554 DVSDFTDSVRDPKTSEILDISPCSF----------GGVSVITPGTNASSEVAVLYQDVNC 603
+ + + I + CS GV V ++ + ++++V
Sbjct 581 LSNARCHIFSNLMLNGINSGTTCSTDFQLPNTEVVTGVCVKYDLYGSTGQG--VFKEVKA 638
Query 604 TD---VSTAIHADQLTPAWRIYSTGNNVF---QTQAGCLIGAEHVDT--------SYECD 649
++ N + +G + A H D + +CD
Sbjct 639 DYYNSWQNLLYDVNGNLNGFRDIVTNKTYLLRSCYSGRVSAAYHQDAPEPALLYRNLKCD 698
Query 650 IPIGAGI---------------CASYHTVSL---------------------LRSTSQKS 673
I C S +
Sbjct 699 YVFNNNISREETPLNYFDSYLGCVINADNSTEQSVDACDLRMGSGLCVNYSIAHRARRSV 758
Query 674 IVAYTMSLGADSSIAYSNNTI---------AIPTNFSISITTEVMPVSMAKTSVDCNMYI 724
Y ++ +++ N+++ IPTNF+I+ E + K ++DC ++
Sbjct 759 STGYKLTTFEPFTVSIVNDSVESVGGLYEMQIPTNFTIASHQEFIQTRSPKVTIDCAAFV 818
Query 725 CGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFG---- 780
CGD T C L+ YGSFC +N L + D +V + + Q + G
Sbjct 819 CGDYTACRQQLVDYGSFCDNINAILGEVNNLIDTMQLQVASALIQGVTLSSRLADGISGQ 878
Query 781 --GFNFSQILP----DPLKPTK----RSFIEDLLFNKVTLADAGFMKQYGECLGDINARD 830
NFS +L D + TK RS IED+LF+KV L+D GF++ Y C G RD
Sbjct 879 IDDINFSPLLGCLGSDCSEGTKAAQGRSAIEDVLFDKVKLSDVGFVESYNNCTGGQEVRD 938
Query 831 LICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNG 890
L+C Q FNG+ VLPP+L++ I+ YTA + W+ AG +PFA+ + YR NG
Sbjct 939 LLCVQSFNGIKVLPPVLSESQISGYTAGATASAMFPPWSAAAG----VPFALSVQYRING 994
Query 891 IGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSS 950
+GVT NVL ENQK IA+ FN AI IQE T++AL K+Q VVN NA+ALN L+ QLS+
Sbjct 995 LGVTMNVLSENQKMIASSFNNAIGAIQEGFDATNSALAKIQSVVNANAEALNNLLNQLSN 1054
Query 951 NFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATK 1010
FGAIS+ L +ILSRLD +EA+ QIDRLI GRL +L YV++QL I+ SA A K
Sbjct 1055 RFGAISASLQEILSRLDALEAQAQIDRLINGRLTALNAYVSKQLSDMTLIKVSAAQAIEK 1114
Query 1011 MSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEG-KA 1069
++ECV QS R++FCG G H++S Q AP+G+ F+H +YVP+ +P +C G +
Sbjct 1115 VNECVKSQSPRINFCGNGNHILSLVQNAPYGLYFIHFSYVPTSFTTVNVSPGLCISGDRG 1174
Query 1070 YFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPLQPELDS 1129
P+ G FV + W T N++ P+ IT N+ V +C V + L
Sbjct 1175 LAPKAGYFVQDHGEWKFTGSNYYYPESITDKNSVVMSSCAVNYTKAPEVFLNTSITNLPD 1234
Query 1130 FKEELDKYFKNHTSPDVDL-GDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKY 1188
FKEELDK+FKN TS DL DI +N + +++ E++R+ + KNLNES I+L+E+G Y
Sbjct 1235 FKEELDKWFKNQTSIVPDLSFDIGKLNVTFLDLSYEMNRIQDAIKNLNESYINLKEIGTY 1294
Query 1189 EQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDEDDS-EPVL 1247
E Y+KWPWYVWL + GL + + +L CG+CC V+
Sbjct 1295 EMYVKWPWYVWL--LIGLAGVAVCVLLFFICCCTGCGSCCFKKCGNCCDEYGGRQAGIVI 1352
Query 1248 KGVKLH 1253
+ H
Sbjct 1353 HNISSH 1358
>sp|Q0ZME7|SPIKE_CVHN5 Spike glycoprotein OS=Human coronavirus
HKU1 (isolate N5) OX=443241 GN=S PE=1 SV=1
Length=1351
Score = 1190 bits (3078), Expect = 0.0, Method: Composition-based stats.
Identities = 381/1391 (27%), Positives = 601/1391 (43%), Gaps = 188/1391 (14%)
Query 1 MFIFLLFLTLTSGSDLD-RCTTF----DDVQAPNYTQHTSS---MRGVYYPDEIFRSDTL 52
MF+ + L T D CT + P ++ G YY + +
Sbjct 1 MFLIIFILPTTLAVIGDFNCTNSFINDYNKTIPRISEDVVDVSLGLGTYYV-----LNRV 55
Query 53 YLTQDLFLPFYSNVTGFHTINHTFGNPV------------IPFKDGIYFAATEKSNVVRG 100
YL L Y +G + + + F +GI F+ + + +
Sbjct 56 YLNTTLLFTGYFPKSGANFRDLALKGSIYLSTLWYKPPFLSDFNNGI-FSKVKNTKLYVN 114
Query 101 ---------WVFGSTMNNKSQSVIIINNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTM 151
V GS N S ++++ ++ + I AC + +C+ P + +
Sbjct 115 NTLYSEFSTIVIGSVFVNTSYTIVVQPHNGILEITACQYTMCEYPHTVCKSKGSIRNESW 174
Query 152 IFDNAFN-CTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLP 210
D++ C F+ F+ +VS F F + G Y Y +P
Sbjct 175 HIDSSEPLCLFK---KNFTYNVSAD------WLYFHFYQERGVFYAYYA------DVGMP 219
Query 211 SGFNTLKPIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENG 270
+ F +F L LG ++++ + + Y+V L ++L +DE+G
Sbjct 220 TTF-----LFSLYLGTILSHYYVMPLTCNAISSNTDNETLEYWVTPLSRRQYLLNFDEHG 274
Query 271 TITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVR-FPNITNLCPFGEVF 329
IT+AVDCS + L+E++C +SF + G+Y S F V P V R PN+ + C
Sbjct 275 VITNAVDCSSSFLSEIQCKTQSFAPNTGVYDLSGFTVKPVATVYRRIPNLPD-CDIDNWL 333
Query 330 NATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVV 389
N PS WER+ SNC + S L +F C + +K+ CF+++ D F +
Sbjct 334 NNVSVPSPLNWERRIFSNCNFNLSTLLRLVHVDSFSCNNLDKSKIFGSCFNSITVDKFAI 393
Query 390 KGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDATSTGNYNYKYRYLRHG--- 446
+ G +G + NYK+ C L ++ ++ T N+N R+G
Sbjct 394 PNRRRDDLQLGSSGFLQSSNYKIDISSSSCQLYYSLPLVNVT-INNFNPSSWNRRYGFGS 452
Query 447 -KLRPFERDISNVPFS--PDGKPCTPPA----------LNCYWPLNDY------------ 481
L ++ S+ FS D PC P+ + P
Sbjct 453 FNLSSYDVVYSDHCFSVNSDFCPCADPSVVNSCAKSKPPSAICPAGTKYRHCDLDTTLYV 512
Query 482 ----------GFYTTTGIGYQPYRVVVLSFE---------------LLNAPATVCGPKLS 516
+T P + VV+ LN + C P
Sbjct 513 KNWCRCSCLPDPISTYSPNTCPQKKVVVGIGEHCPGLGINEEKCGTQLNHSSCFCSPDAF 572
Query 517 TDLIKNQCV---------NFNFNGLT----------------GTGVLTPSSKRFQPFQQF 551
+ C+ NF FNG+ TGV Q
Sbjct 573 LGWSFDSCISNNRCNIFSNFIFNGINSGTTCSNDLLYSNTEISTGVCVNYDLYGITGQGI 632
Query 552 GRDVS----DFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQD------- 600
++VS + ++ I+ I P + A
Sbjct 633 FKEVSAAYYNNWQNLLYDSNGNIIGFKDFLTNKTYTILPCYSGRVSAAFYQNSSSPALLY 692
Query 601 --VNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIGAEHVD--TSYECDIPIGAGI 656
+ C+ V I + + F + GC++ A ++ + CD+ +G+G
Sbjct 693 RNLKCSYVLNNIS----------FISQPFYFDSYLGCVLNAVNLTSYSVSSCDLRMGSGF 742
Query 657 CASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNT---------IAIPTNFSISITTE 707
C Y S R S Y ++++ N++ I IPTNF+I+ E
Sbjct 743 CIDYALPSSRRKRRGIS-SPYRFVTFEPFNVSFVNDSVETVGGLFEIQIPTNFTIAGHEE 801
Query 708 VMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQV 767
+ S K ++DC+ ++C + C +LL +YG+FC +N L+ + D +V +
Sbjct 802 FIQTSSPKVTIDCSAFVCSNYAACHDLLSEYGTFCDNINSILNEVNDLLDITQLQVANAL 861
Query 768 KQMYKTPT------LKYFGGFNFSQI---LPDPLKPTKRSFIEDLLFNKVTLADAGFMKQ 818
Q + +F + L + RS +EDLLFNKV L+D GF++
Sbjct 862 MQGVTLSSNLNTNLHSDVDNIDFKSLLGCLGSQCGSSSRSLLEDLLFNKVKLSDVGFVEA 921
Query 819 YGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQI 878
Y C G RDL+C Q FNG+ VLPP+L++ I+ YT A W+ AG +
Sbjct 922 YNNCTGGSEIRDLLCVQSFNGIKVLPPILSETQISGYTTAATVAAMFPPWSAAAG----V 977
Query 879 PFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNA 938
PF++ + YR NG+GVT +VL +NQK IAN FNKA+ IQ T T++AL K+Q VVN NA
Sbjct 978 PFSLNVQYRINGLGVTMDVLNKNQKLIANAFNKALLSIQNGFTATNSALAKIQSVVNANA 1037
Query 939 QALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAA 998
QALN+L++QL + FGAISS L +ILSRLD +EA+VQIDRLI GRL +L YV+QQL
Sbjct 1038 QALNSLLQQLFNKFGAISSSLQEILSRLDNLEAQVQIDRLINGRLTALNAYVSQQLSDIT 1097
Query 999 EIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFT 1058
I+A A+ A K++ECV QS R++FCG G H++S Q AP+G++F+H +Y P+ +
Sbjct 1098 LIKAGASRAIEKVNECVKSQSPRINFCGNGNHILSLVQNAPYGLLFIHFSYKPTSFKTVL 1157
Query 1059 TAPAICHEG-KAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN 1117
+P +C G + P++G F+ SW T +++ P+ I+ N +C V
Sbjct 1158 VSPGLCLSGDRGIAPKQGYFIKQNDSWMFTGSSYYYPEPISDKNVVFMNSCSVNFTKAPF 1217
Query 1118 TVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNE 1177
+ P L F+ EL +FKNHTS +L S INA+ +++ E++ + E K+LN
Sbjct 1218 IYLNNSIPNLSDFEAELSLWFKNHTSIAPNLTFNSHINATFLDLYYEMNVIQESIKSLNS 1277
Query 1178 SLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCK 1237
S I+L+E+G YE Y+KWPWY+WL + I +M+ +CC T C S C +CC
Sbjct 1278 SFINLKEIGTYEMYVKWPWYIWLLIVILFIIFLMILFFICCCTGCGSA--CFSKCHNCCD 1335
Query 1238 FDEDDSEPVLK 1248
++ V+K
Sbjct 1336 EYGGHNDFVIK 1346
>sp|Q14EB0|SPIKE_CVHN2 Spike glycoprotein OS=Human coronavirus
HKU1 (isolate N2) OX=443240 GN=S PE=3 SV=1
Length=1351
Score = 1186 bits (3069), Expect = 0.0, Method: Composition-based stats.
Identities = 379/1391 (27%), Positives = 600/1391 (43%), Gaps = 188/1391 (14%)
Query 1 MFIFLLFLTLTSGSDLD-RCTTF----DDVQAPNYTQHTSS---MRGVYYPDEIFRSDTL 52
MF+ + L T D CT + P ++ G YY + +
Sbjct 1 MFLIIFILPTTLAVIGDFNCTNSFINDYNKTIPRISEDVVDVSLGLGTYYV-----LNRV 55
Query 53 YLTQDLFLPFYSNVTGFHTINHTFGNP------------VIPFKDGIYFAATEKSNVVRG 100
YL L Y +G + + + F +GI F+ + + +
Sbjct 56 YLNTTLLFTGYFPKSGANFRDLALKGSKYLSTLWYKPPFLSDFNNGI-FSKVKNTKLYVN 114
Query 101 ---------WVFGSTMNNKSQSVIIINNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTM 151
V GS N S ++++ ++ + I AC + +C+ P + +
Sbjct 115 NTLYSEFSTIVIGSVFVNTSYTIVVQPHNGILEITACQYTMCEYPHTVCKSKGSIRNESW 174
Query 152 IFDNAFN-CTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLP 210
D++ C F+ F+ +VS F F + G Y Y +P
Sbjct 175 HIDSSEPLCLFK---KNFTYNVSAD------WLYFHFYQERGVFYAYYA------DVGMP 219
Query 211 SGFNTLKPIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENG 270
+ F +F L LG ++++ + Y+V L ++L +DE+G
Sbjct 220 TTF-----LFSLYLGTILSHYYVMPLTCKAISSNTDNETLEYWVTPLSRRQYLLNFDEHG 274
Query 271 TITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVR-FPNITNLCPFGEVF 329
IT+AVDCS + L+E++C +SF + G+Y S F V P V R PN+ + C
Sbjct 275 VITNAVDCSSSFLSEIQCKTQSFAPNTGVYDLSGFTVKPVATVYRRIPNLPD-CDIDNWL 333
Query 330 NATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVV 389
N PS WER+ SNC + S L +F C + +K+ CF+++ D F +
Sbjct 334 NNVSVPSPLNWERRIFSNCNFNLSTLLRLVHVDSFSCNNLDKSKIFGSCFNSITVDKFAI 393
Query 390 KGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDATSTGNYNYKYRYLRHG--- 446
+ G +G + NYK+ C L ++ ++ T N+N R+G
Sbjct 394 PNRRRDDLQLGSSGFLQSSNYKIDISSSSCQLYYSLPLVNVT-INNFNPSSWNRRYGFGS 452
Query 447 -KLRPFERDISNVPFS--PDGKPCTPPAL----------NCYWPLNDY------------ 481
+ ++ S+ FS D PC P++ + P
Sbjct 453 FNVSSYDVVYSDHCFSVNSDFCPCADPSVVNSCVKSKPLSAICPAGTKYRHCDLDTTLYV 512
Query 482 ----------GFYTTTGIGYQPYRVVVLSFE---------------LLNAPATVCGPKLS 516
+T P + VV+ LN + C P
Sbjct 513 NNWCRCSCLPDPISTYSPNTCPQKKVVVGIGEHCPGLGINEEKCGTQLNHSSCSCSPDAF 572
Query 517 TDLIKNQCV---------NFNFNGL----------------TGTGVLTPSSKRFQPFQQF 551
+ C+ NF FNG+ TGV Q
Sbjct 573 LGWSFDSCISNNRCNIFSNFIFNGINSGTTCSNDLLYSNTEVSTGVCVNYDLYGITGQGI 632
Query 552 GRDVS----DFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQD------- 600
++VS + ++ I+ I P + A
Sbjct 633 FKEVSAAYYNNWQNLLYDSNGNIIGFKDFLTNKTYTILPCYSGRVSAAFYQNSSSPALLY 692
Query 601 --VNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIGAEHVD--TSYECDIPIGAGI 656
+ C+ V I + + F + GC++ A ++ + CD+ +G+G
Sbjct 693 RNLKCSYVLNNIS----------FISQPFYFDSYLGCVLNAVNLTSYSVSSCDLRMGSGF 742
Query 657 CASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNT---------IAIPTNFSISITTE 707
C Y S R S Y ++++ N++ I IPTNF+I+ E
Sbjct 743 CIDYALPSSRRKRRGIS-SPYRFVTFEPFNVSFVNDSVETVGGLFEIQIPTNFTIAGHEE 801
Query 708 VMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQV 767
+ S K ++DC+ ++C + C +LL +YG+FC +N L+ + D +V +
Sbjct 802 FIQTSSPKVTIDCSAFVCSNYAACHDLLSEYGTFCDNINSILNEVNDLLDITQLQVANAL 861
Query 768 KQMYKTPT------LKYFGGFNFSQI---LPDPLKPTKRSFIEDLLFNKVTLADAGFMKQ 818
Q + +F + L + RS +EDLLFNKV L+D GF++
Sbjct 862 MQGVTLSSNLNTNLHSDVDNIDFKSLLGCLGSQCGSSSRSLLEDLLFNKVKLSDVGFVEA 921
Query 819 YGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQI 878
Y C G RDL+C Q FNG+ VLPP+L++ I+ YT A W+ AG +
Sbjct 922 YNNCTGGSEIRDLLCVQSFNGIKVLPPILSETQISGYTTAATVAAMFPPWSAAAG----V 977
Query 879 PFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNA 938
PF++ + YR NG+GVT +VL +NQK IAN FNKA+ IQ T T++AL K+Q VVN NA
Sbjct 978 PFSLNVQYRINGLGVTMDVLNKNQKLIANAFNKALLSIQNGFTATNSALAKIQSVVNANA 1037
Query 939 QALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAA 998
QALN+L++QL + FGAISS L +ILSRLD +EA+VQIDRLI GRL +L YV+QQL
Sbjct 1038 QALNSLLQQLFNKFGAISSSLQEILSRLDNLEAQVQIDRLINGRLTALNAYVSQQLSDIT 1097
Query 999 EIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFT 1058
I+A A+ A K++ECV QS R++FCG G H++S Q AP+G++F+H +Y P+ +
Sbjct 1098 LIKAGASRAIEKVNECVKSQSPRINFCGNGNHILSLVQNAPYGLLFIHFSYKPTSFKTVL 1157
Query 1059 TAPAICHEG-KAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN 1117
+P +C G + P++G F+ SW T +++ P+ I+ N +C V
Sbjct 1158 VSPGLCLSGDRGIAPKQGYFIKQNDSWMFTGSSYYYPEPISDKNVVFMNSCSVNFTKAPF 1217
Query 1118 TVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNE 1177
+ P L F+ E +FKNHTS +L S INA+ +++ E++ + E K+LN
Sbjct 1218 IYLNNSIPNLSDFEAEFSLWFKNHTSIAPNLTFNSHINATFLDLYYEMNVIQESIKSLNS 1277
Query 1178 SLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCK 1237
S I+L+E+G YE Y+KWPWY+WL + I +M+ +CC T C S C +CC
Sbjct 1278 SFINLKEIGTYEMYVKWPWYIWLLIVILFIIFLMILFFICCCTGCGSA--CFSKCHNCCD 1335
Query 1238 FDEDDSEPVLK 1248
++ V+K
Sbjct 1336 EYGGHNDFVIK 1346
>sp|A3EXG6|SPIKE_BCHK9 Spike glycoprotein OS=Bat coronavirus HKU9
OX=694006 GN=S PE=1 SV=1
Length=1274
Score = 1181 bits (3054), Expect = 0.0, Method: Composition-based stats.
Identities = 416/1314 (32%), Positives = 650/1314 (49%), Gaps = 107/1314 (8%)
Query 1 MFIFLLFLTLTSGSDLDRCTTFDDVQAP-----NYTQHTSSMRGVYYPDEIFRSDTLYLT 55
M + L+ + + C P NYT + + V PD L
Sbjct 1 MLLILVLGVSLAAASRPECFNPRFTLTPLNHTLNYTSIKAKVSNVLLPDPYIAYSGQTLR 60
Query 56 QDLFLPFYSNVTGFHTI--------NHTFGNPVIPFKDGIYF-------AATEKSNVVR- 99
Q+LF+ SN + + +IP G++ A+ ++
Sbjct 61 QNLFMADMSNTILYPVTPPANGANGGFIYNTSIIPVSAGLFVNTWMYRQPASSRAYCQEP 120
Query 100 -GWVFGSTMNNKSQSVIII-------------NNSTNVVIRAC-NFELCDNPFFAVSKPM 144
G FG T N +++I+ N TN+ + C N LC NP F P
Sbjct 121 FGVAFGDTFENDRIAILIMAPDNLGSWSAVAPRNQTNIYLLVCSNATLCINPGFNRWGPA 180
Query 145 GT-QTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPI 203
G+ + D++ +C ++++ FS+++S + F+FK+ D +Y + G+ P
Sbjct 181 GSFIAPDALVDHSNSC---FVNNTFSVNISTSRISLA----FLFKDGDLLIY-HSGWLPT 232
Query 204 -DVVRDLPSGFNTLKPIFKLPLGINITN---FRAIL--TAFSPAQDIWGTSAAAYFVGYL 257
+ G + + LP+G N+ F++I+ A + V +L
Sbjct 233 SNFEHGFSRGSHPMTYFMSLPVGGNLPRAQFFQSIVRSNAIDKGDGMCTNFDVNLHVAHL 292
Query 258 KPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP 317
++ Y NG++ +A DC+ + EL C SF+ G+Y S +R +G VR
Sbjct 293 INRDLLVSYFNNGSVANAADCADSAAEELYCVTGSFDPPTGVYPLSRYRAQVAG-FVRVT 351
Query 318 NITNLC-PFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLND 376
+ C P V P V W R + +CV D++V+ +S +CYGVS +L
Sbjct 352 QRGSYCTPPYSVLQDPPQPVV--WRRYMLYDCVFDFTVVVDSLPTHQLQCYGVSPRRLAS 409
Query 377 LCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDATSTGNY 436
+C+ +V D + + + + YNY LPD+F GC+ A+ ST Y
Sbjct 410 MCYGSVTLDVMRINETHLNNLFNRVPDTFSLYNYALPDNFYGCLHAFYLN-----STAPY 464
Query 437 NYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRV 496
R+ P P G+ ++ Y ++ Y +
Sbjct 465 AVANRF----------------PIKPGGRQSNSAFIDTVINAAHYSPFSYV------YGL 502
Query 497 VVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFNGLTGTGVLTPSSKRFQPF-QQFGRDV 555
V++ + VC T +I ++CV +N G TGTGVL+ ++ P + F
Sbjct 503 AVITLKPAAGSKLVCPVANDTVVITDRCVQYNLYGYTGTGVLSKNTSLVIPDGKVFTASS 562
Query 556 SDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQL 615
+ V S I PC VSV G + + E A+L+ ++C+ S A+ + +
Sbjct 563 TGTIIGVS--INSTTYSIMPCVTVPVSV---GYHPNFERALLFNGLSCSQRSRAV-TEPV 616
Query 616 TPAWRIYSTGNNVFQTQAGCLIGAEHVDTSY--ECDIPIGAGICASYHTVSLLRSTSQKS 673
+ W +T + F T +GC++ E +T+ C +PIG +C +++ + S
Sbjct 617 SVLWSASATAQDAFDTPSGCVVNVELRNTTIVNTCAMPIGNSLCFINGSIATANADSLPR 676
Query 674 IVAYTMSLGADSSIAYSNNTI---AIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTE 730
+ D+S A + +PTNF++S T E + + K ++DC Y+CGDS+
Sbjct 677 LQLVNYDPLYDNSTATPMTPVYWVKVPTNFTLSATEEYIQTTAPKITIDCARYLCGDSSR 736
Query 731 CANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFA--QVKQMYKTPTLKYFGGFNFSQIL 788
C N+LL YG+FC +N+ALS ++ D + + + T + G +NF+ ++
Sbjct 737 CLNVLLHYGTFCNDINKALSRVSTILDSALLSLVKELSINTRDEVTTFSFDGDYNFTGLM 796
Query 789 ----PDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLG---DINARDLICAQKFNGLT 841
P+ T RS DLL++KV + D GFM+ Y +C+ + RDL+C Q +NG+
Sbjct 797 GCLGPNCGATTYRSAFSDLLYDKVRITDPGFMQSYQKCIDSQWGGSIRDLLCTQTYNGIA 856
Query 842 VLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYEN 901
VLPP+++ M A YT+ LV A++G+TFG +A IPFA Q+ +R NGIGVT VL EN
Sbjct 857 VLPPIVSPAMQALYTSLLVGAVASSGYTFGITSAGVIPFATQLQFRLNGIGVTTQVLVEN 916
Query 902 QKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLND 961
QK IA+ FN A+ IQ+ T TS AL K+QDV+NQ+A L+TLV QL ++FGAISS +N+
Sbjct 917 QKLIASSFNNALVNIQKGFTETSIALSKMQDVINQHAAQLHTLVVQLGNSFGAISSSINE 976
Query 962 ILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKR 1021
I SRL+ + A ++DRLI GR+ L TYVTQ LI+A+E +A LAA K+SECV QS R
Sbjct 977 IFSRLEGLAANAEVDRLINGRMMVLNTYVTQLLIQASEAKAQNALAAQKISECVKAQSLR 1036
Query 1022 VDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFV--F 1079
DFCG G H++S PQ AP+GV+F+H Y P++ T+ +CH G Y PR+G+FV
Sbjct 1037 NDFCGNGTHVLSIPQLAPNGVLFIHYAYTPTEYAFVQTSAGLCHNGTGYAPRQGMFVLPN 1096
Query 1080 NGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPLQPELDSFKEELDKYFK 1139
N W T F++P I+ NT V +C V +N TV +P P F++E DK++K
Sbjct 1097 NTNMWHFTTMQFYNPVNISASNTQVLTSCSVNYTSVNYTVLEPSVPGDYDFQKEFDKFYK 1156
Query 1140 NHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVW 1199
N ++ + + + N S V++ +I L++V LN+S IDL++L YE+ IKWPWYVW
Sbjct 1157 NLSTIFNNTFNPNDFNFSTVDVTAQIKSLHDVVNQLNQSFIDLKKLNVYEKTIKWPWYVW 1216
Query 1200 LGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDE--DDSEPVLKGVK 1251
L IAG++ +V+ I+L CMT+CCSC KG C C CC + DD P ++ K
Sbjct 1217 LAMIAGIVGLVLAVIMLMCMTNCCSCFKGMCDCRRCCGSYDSYDDVYPAVRVNK 1270
>sp|A3EXD0|SPIKE_BCHK5 Spike glycoprotein OS=Bat coronavirus HKU5
OX=694008 GN=S PE=1 SV=1
Length=1352
Score = 1121 bits (2900), Expect = 0.0, Method: Composition-based stats.
Identities = 396/1161 (34%), Positives = 582/1161 (50%), Gaps = 69/1161 (6%)
Query 131 ELCDNPFFAVSKPMGTQTHTM----IFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFV 186
L D P Q T+ ++ + NCTF Y +++ E + F +
Sbjct 213 SLWDTPASDCVSGSYNQEATLGAFKVYFDLINCTFRY---NYTITEDENAEWFG-----I 264
Query 187 FKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITNFRAILTAFSPAQDIWG 246
++ G +++Y + +V R+ F TL P+++ L + R+I + F+ + W
Sbjct 265 TQDTQG-VHLYSSRKE-NVFRNNMFHFATL-PVYQKILYYTVIP-RSIRSPFND-RKAW- 318
Query 247 TSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFR 306
AA+++ L P T++L +D G IT AVDC + LA+L+CS +SFE++ G+Y S+F
Sbjct 319 ---AAFYIYKLHPLTYLLNFDVEGYITKAVDCGYDDLAQLQCSYESFEVETGVYSVSSFE 375
Query 307 VVPSGDVVRFPNITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKC 366
P G+ + T C F + T P +Y ++R +NC + + L + S F C
Sbjct 376 ASPRGEFIEQA-TTQECDFTPMLTGTP-PPIYNFKRLVFTNCNYNLTKLLSLFQVSEFSC 433
Query 367 YGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGC-VLAWNT 425
+ VS + L C+S++ D F D + PG G I +NYK C VLA
Sbjct 434 HQVSPSSLATGCYSSLTVDYFAYSTDMSSYLQPGSAGAIVQFNYKQDFSNPTCRVLATVP 493
Query 426 RNID-ATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFY 484
+N+ T NY Y + + ++P + + + G
Sbjct 494 QNLTTITKPSNYAYLTECYKTSAYGKNYLYNAPGAYTPCLSL-ASRGFSTKYQSHSDGEL 552
Query 485 TTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLI---------KNQCVNFNFNGLTGT 535
TTTG Y + ++F + T + + CV ++ +G+TG
Sbjct 553 TTTGYIYPVTGNLQMAFIISVQYGTDTNSVCPMQALRNDTSIEDKLDVCVEYSLHGITGR 612
Query 536 GVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVA 595
GV + Q+F D D + PC VSVI AS+ A
Sbjct 613 GVFHNCTSVGLRNQRFVYDTFDNLVGYHS-DNGNYYCVRPCVSVPVSVIYD--KASNSHA 669
Query 596 VLYQDVNCTDVSTAIHA-DQLTPAWRIYSTGNNVFQTQAGCLIGAEHVDTSY-ECDIPIG 653
L+ V C+ V+T + ++T + T QT GC +G + EC +P+G
Sbjct 670 TLFGSVACSHVTTMMSQFSRMTKTNLLARTTPGPLQTTVGCAMGFINSSMVVDECQLPLG 729
Query 654 AGICASYHTVSLLRSTSQKS----IVAYTMSLGAD---SSIAYSNNTIAIPTNFSISITT 706
+CA T S + T++ + + I + +A+PTNF+ +T
Sbjct 730 QSLCAIPPTTSSRVRRATSGASDVFQIATLNFTSPLTLAPINSTGFVVAVPTNFTFGVTQ 789
Query 707 EVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQ 766
E + ++ K +VDC Y+C +C +LL +YG FC+++N+AL G QD + +F+
Sbjct 790 EFIETTIQKITVDCKQYVCNGFKKCEDLLKEYGQFCSKINQALHGANLRQDESIANLFSS 849
Query 767 VKQMYKTPTLKYF-GGFNFSQI-LPDPLKP--TKRSFIEDLLFNKVTLADAGFMKQYGEC 822
+K P G FN + + +P RS IEDLLFNKVT+AD G+M+ Y EC
Sbjct 850 IKTQNTQPLQAGLNGDFNLTMLQIPQVTTGERKYRSTIEDLLFNKVTIADPGYMQGYDEC 909
Query 823 L--GDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPF 880
+ G +ARDLICAQ G VLPPL M AAYT++L+ A A WT G + IPF
Sbjct 910 MQQGPQSARDLICAQYVAGYKVLPPLYDPYMEAAYTSSLLGSIAGASWTAGLSSFAAIPF 969
Query 881 AMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQA 940
A + YR NG+G+TQ VL ENQK IAN+FN+A+ +Q TTT+ A K+QD VN NA A
Sbjct 970 AQSIFYRLNGVGITQQVLSENQKIIANKFNQALGAMQTGFTTTNLAFNKVQDAVNANAMA 1029
Query 941 LNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEI 1000
L+ L +LS+ FGAISS ++DIL+RLD VE E QIDRLI GRL SL +V QQL+R
Sbjct 1030 LSKLAAELSNTFGAISSSISDILARLDTVEQEAQIDRLINGRLTSLNAFVAQQLVRTEAA 1089
Query 1001 RASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTA 1060
SA LA K++ECV QSKR FCG G H++SF AP+G+ F HV Y P+ N T A
Sbjct 1090 ARSAQLAQDKVNECVKSQSKRNGFCGTGTHIVSFAINAPNGLYFFHVGYQPTSHVNATAA 1149
Query 1061 PAICHE---GKAYFPREGVFVFNGTS---------WFITQRNFFSPQIITTDNTFVSGNC 1108
+C+ K P +G FV N T+ W+ T +FF P+ IT N+ +
Sbjct 1150 YGLCNTENPQKCIAPIDGYFVLNQTTSTVADSDQQWYYTGSSFFHPEPITEANSKYV-SM 1208
Query 1109 DVVIGIINNTVYDPLQPE--LDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEID 1166
DV + N + PL FKEEL+++FKN +S + +IS IN +++N+ E+
Sbjct 1209 DVKFENLTNRLPPPLLSNSTDLDFKEELEEFFKNVSSQGPNFQEISKINTTLLNLNTELM 1268
Query 1167 RLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCL 1226
L+EV K LNES IDL+ELG Y Y KWPWY+WLGFIAGL+A+ + + C T C +
Sbjct 1269 VLSEVVKQLNESYIDLKELGNYTFYQKWPWYIWLGFIAGLVALALCVFFILCCTGCGTSC 1328
Query 1227 KGACSCGSCCK-FDEDDSEPV 1246
G C CC +DE + E +
Sbjct 1329 LGKLKCNRCCDSYDEYEVEKI 1349
>sp|Q0Q4F2|SPIKE_BC133 Spike glycoprotein OS=Bat coronavirus 133/2005
OX=389230 GN=S PE=3 SV=1
Length=1350
Score = 1119 bits (2895), Expect = 0.0, Method: Composition-based stats.
Identities = 395/1147 (34%), Positives = 574/1147 (50%), Gaps = 66/1147 (6%)
Query 142 KPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQ 201
+ F + NCTF +++ + E F + ++ G ++++ +
Sbjct 225 NRNASLNSFKSFFDLVNCTF---FNSWDITADETKEWFG-----ITQDTQG-VHLHSSRK 275
Query 202 PIDVVRDLPSGFNTLKPIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTT 261
D+ F T LP+ I + I +F + AA++V L T
Sbjct 276 G-DLYGGNMFRFAT------LPVYEGIKYYTVIPRSFRSKA-NKREAWAAFYVYKLHQLT 327
Query 262 FMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITN 321
++L + +G I A+DC + L++L CS SFE+D G+Y S++ +G + PN+T
Sbjct 328 YLLDFSVDGYIRRAIDCGHDDLSQLHCSYTSFEVDTGVYSVSSYEASATGTFIEQPNVTE 387
Query 322 LCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSN 381
C F + P VY ++R SNC + + L + F C G+S + C+S
Sbjct 388 -CDFSPMLTGVA-PQVYNFKRLVFSNCNYNLTKLLSLFAVDEFSCNGISPDAIARGCYST 445
Query 382 VYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGC-VLAWNTRNIDATSTGNYNYKY 440
+ D F I PG G I YNYK C V+A N+ T G Y Y
Sbjct 446 LTVDYFAYPLSMKSYIRPGSAGNIPLYNYKQSFANPTCRVMASVPDNVTITKPGAYGYIS 505
Query 441 RYLRHGK----------LRPFE----RDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTT 486
+ R + P E RD + + FS DG+ G T
Sbjct 506 KCSRLTGVNQDIETPLYINPGEYSICRDFAPLGFSEDGQVFKRTLTQFEGGGLLIGVGTR 565
Query 487 TGIGYQPYRVVVLSFELLNAPATVC-----GPKLSTDLIKNQCVNFNFNGLTGTGVLTPS 541
+ V+S + +VC G L+ +CV+++ G+TG GV
Sbjct 566 VPMTANLEMGFVISVQYGTGTDSVCPMLDLGDSLTITNRLGKCVDYSLYGVTGRGVFQNC 625
Query 542 SKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDV 601
+ Q+F D D + PC VSVI +++ A L+ V
Sbjct 626 TAVGVKQQRFVYDSFDNLVGYYS-DDGNYYCVRPCVSVPVSVIYD--KSTNLHATLFGSV 682
Query 602 NCTDVSTAIHA-DQLTPAWRIYSTGNNVFQTQAGCLIG-AEHVDTSYECDIPIGAGICAS 659
C V+T + +LT + N QT GC+IG + + +C +P+G +CA
Sbjct 683 ACEHVTTMMSQFSRLTQSNLRRRDSNTPLQTAVGCVIGLSNNSLVVSDCKLPLGQSLCAV 742
Query 660 YHTVSLLRSTSQKSIVAYTM---SLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKT 716
VS+ RS S + S + I S T AIPTNFS S+T E + S+ K
Sbjct 743 PP-VSMFRSYSASQFQLAVLNYTSPIVVTPINSSGFTAAIPTNFSFSLTQEYIETSIQKV 801
Query 717 SVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTL 776
+VDC Y+C T C LL++YG FC+++N+AL G QD + +++ +K
Sbjct 802 TVDCKQYVCNGFTRCEKLLVEYGQFCSKINQALHGANLRQDESVYSLYSNIKTTSTQTLE 861
Query 777 KYF-GGFNFSQI-LPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECL--GDINARDLI 832
G FN + + +P + RS IEDLLF+KVT+AD G+M+ Y +C+ G +ARDLI
Sbjct 862 YGLNGDFNLTLLQVPQIGGSSYRSAIEDLLFDKVTIADPGYMQGYDDCMKQGPQSARDLI 921
Query 833 CAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIG 892
CAQ +G VLPPL +M AAYT++L+ A AGWT G + IPFA M YR NG+G
Sbjct 922 CAQYVSGYKVLPPLYDPNMEAAYTSSLLGSIAGAGWTAGLSSFAAIPFAQSMFYRLNGVG 981
Query 893 VTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNF 952
+TQ VL ENQK IAN+FN+A+ +Q TT++ A K+QD VN NAQAL+ L +LS+ F
Sbjct 982 ITQQVLSENQKLIANKFNQALGAMQTGFTTSNLAFSKVQDAVNANAQALSKLASELSNTF 1041
Query 953 GAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMS 1012
GAISS ++DIL+RLD VE + QIDRLI GRL SL +V+QQL+R+ SA LA+ K++
Sbjct 1042 GAISSSISDILARLDTVEQDAQIDRLINGRLTSLNAFVSQQLVRSETAARSAQLASDKVN 1101
Query 1013 ECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGK---A 1069
ECV QSKR FCG G H++SF AP+G F HV YVP+ N T A +C+
Sbjct 1102 ECVKSQSKRNGFCGSGTHIVSFVVNAPNGFYFFHVGYVPTNYTNVTAAYGLCNHNNPPLC 1161
Query 1070 YFPREGVFVFN-------GTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDP 1122
P +G F+ N T W+ T +FF P+ IT N+ + DV + N + P
Sbjct 1162 IAPIDGYFITNQTTTYSVDTEWYYTGSSFFKPEPITQANSRYVSS-DVKFEKLENNLPPP 1220
Query 1123 LQPE--LDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLI 1180
L FK+EL+++FKN TS + +IS IN +++++ E+ L EV K LN+S I
Sbjct 1221 LLENSTDVDFKDELEEFFKNVTSHGPNFAEISKINTTLLDLSDEMAILQEVVKQLNDSYI 1280
Query 1181 DLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCK-FD 1239
DL+ELG Y Y KWPWY+WLGFIAGL+A+++ L C T C + G C +CC ++
Sbjct 1281 DLKELGNYTYYNKWPWYIWLGFIAGLVALLLCVFFLLCCTGCGTSCLGKMKCKNCCDSYE 1340
Query 1240 EDDSEPV 1246
E D E +
Sbjct 1341 EYDVEKI 1347
>sp|A3EX94|SPIKE_BCHK4 Spike glycoprotein OS=Bat coronavirus HKU4
OX=694007 GN=S PE=1 SV=1
Length=1352
Score = 1105 bits (2858), Expect = 0.0, Method: Composition-based stats.
Identities = 403/1219 (33%), Positives = 587/1219 (48%), Gaps = 98/1219 (8%)
Query 102 VFGSTMNNKS--------QSVIIINNS--TNVVIRAC-----------------NFELCD 134
+ GS++ N S S+ II + T + C ++ + +
Sbjct 155 ILGSSLTNTSAGQPLYANYSLTIIPDGCGTVLHAFYCILKPRTVNRCPSGTGYVSYFIYE 214
Query 135 NPFFAVS---KPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKD 191
+ F + NCTF +++ + E F + ++
Sbjct 215 TVHNDCQSTINRNASLNSFKSFFDLVNCTF---FNSWDITADETKEWFG-----ITQDTQ 266
Query 192 GFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITNFRAILTAFSPAQDIWGTSAAA 251
G +++Y + D+ F T LP+ I + I +F + AA
Sbjct 267 G-VHLYSSRKG-DLYGGNMFRFAT------LPVYEGIKYYTVIPRSFRSKA-NKREAWAA 317
Query 252 YFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSG 311
++V L T++L + +G I A+DC + L++L CS SFE+D G+Y S++ +G
Sbjct 318 FYVYKLHQLTYLLDFSVDGYIRRAIDCGHDDLSQLHCSYTSFEVDTGVYSVSSYEASATG 377
Query 312 DVVRFPNITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSA 371
+ PN T C F + P VY ++R SNC + + L + F C G+S
Sbjct 378 TFIEQPNATE-CDFSPMLTGVA-PQVYNFKRLVFSNCNYNLTKLLSLFAVDEFSCNGISP 435
Query 372 TKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGC-VLAWNTRNIDA 430
+ C+S + D F I PG G I YNYK C V+A N+
Sbjct 436 DSIARGCYSTLTVDYFAYPLSMKSYIRPGSAGNIPLYNYKQSFANPTCRVMASVLANVTI 495
Query 431 TSTGNYNYKYRYLRHGK----------LRPFE----RDISNVPFSPDGKPCTPPALNCYW 476
T Y Y + R + P E RD S FS DG+
Sbjct 496 TKPHAYGYISKCSRLTGANQDVETPLYINPGEYSICRDFSPGGFSEDGQVFKRTLTQFEG 555
Query 477 PLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVC-----GPKLSTDLIKNQCVNFNFNG 531
G T + ++S + +VC G L+ +CV+++ G
Sbjct 556 GGLLIGVGTRVPMTDNLQMSFIISVQYGTGTDSVCPMLDLGDSLTITNRLGKCVDYSLYG 615
Query 532 LTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNAS 591
+TG GV + Q+F D D + PC VSVI ++
Sbjct 616 VTGRGVFQNCTAVGVKQQRFVYDSFDNLVGYYS-DDGNYYCVRPCVSVPVSVIYD--KST 672
Query 592 SEVAVLYQDVNCTDVSTAIHA-DQLTPAWRIYSTGNNVFQTQAGCLIG-AEHVDTSYECD 649
+ A L+ V C V+T + +LT + N QT GC+IG + + +C
Sbjct 673 NLHATLFGSVACEHVTTMMSQFSRLTQSNLRRRDSNIPLQTAVGCVIGLSNNSLVVSDCK 732
Query 650 IPIGAGICASYHTVSLLRSTSQKSIVAYTM---SLGADSSIAYSNNTIAIPTNFSISITT 706
+P+G +CA VS RS S + S + I S T AIPTNFS S+T
Sbjct 733 LPLGQSLCAVPP-VSTFRSYSASQFQLAVLNYTSPIVVTPINSSGFTAAIPTNFSFSVTQ 791
Query 707 EVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQ 766
E + S+ K +VDC Y+C T C LL++YG FC+++N+AL G QD + +++
Sbjct 792 EYIETSIQKVTVDCKQYVCNGFTRCEKLLVEYGQFCSKINQALHGANLRQDESVYSLYSN 851
Query 767 VKQMYKTPTLKYF-GGFNFSQILPDP---LKPTKRSFIEDLLFNKVTLADAGFMKQYGEC 822
+K G FN + + + RS IEDLLF+KVT+AD G+M+ Y +C
Sbjct 852 IKTTSTQTLEYGLNGDFNLTLLQVPQIGGSSSSYRSAIEDLLFDKVTIADPGYMQGYDDC 911
Query 823 L--GDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPF 880
+ G +ARDLICAQ +G VLPPL +M AAYT++L+ A AGWT G + IPF
Sbjct 912 MKQGPQSARDLICAQYVSGYKVLPPLYDPNMEAAYTSSLLGSIAGAGWTAGLSSFAAIPF 971
Query 881 AMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQA 940
A M YR NG+G+TQ VL ENQK IAN+FN+A+ +Q TT++ A K+QD VN NAQA
Sbjct 972 AQSMFYRLNGVGITQQVLSENQKLIANKFNQALGAMQTGFTTSNLAFSKVQDAVNANAQA 1031
Query 941 LNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEI 1000
L+ L +LS+ FGAISS ++DIL+RLD VE + QIDRLI GRL SL +V+QQL+R+
Sbjct 1032 LSKLASELSNTFGAISSSISDILARLDTVEQDAQIDRLINGRLISLNAFVSQQLVRSETA 1091
Query 1001 RASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTA 1060
SA LA+ K++ECV QSKR FCG G H++SF AP+G F HV YVP+ N T A
Sbjct 1092 ARSAQLASDKVNECVKSQSKRNGFCGSGTHIVSFVVNAPNGFYFFHVGYVPTNYTNVTAA 1151
Query 1061 PAICHEGK---AYFPREGVFVFN-------GTSWFITQRNFFSPQIITTDNTFVSGNCDV 1110
+C+ P +G F+ N T W+ T +F+ P+ IT N+ + DV
Sbjct 1152 YGLCNNNNPPLCIAPIDGYFITNQTTTYSVDTEWYYTGSSFYKPEPITQANSRYVSS-DV 1210
Query 1111 VIGIINNTVYDPLQPE--LDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRL 1168
+ N + PL FK+EL+++FKN TS + +IS IN +++++ E+ L
Sbjct 1211 KFDKLENNLPPPLLENSTDVDFKDELEEFFKNVTSHGPNFAEISKINTTLLDLSDEMAML 1270
Query 1169 NEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKG 1228
EV K LN+S IDL+ELG Y Y KWPWYVWLGFIAGL+A+++ L C T C + G
Sbjct 1271 QEVVKQLNDSYIDLKELGNYTYYNKWPWYVWLGFIAGLVALLLCVFFLLCCTGCGTSCLG 1330
Query 1229 ACSCGSCCK-FDEDDSEPV 1246
C +CC ++E D E +
Sbjct 1331 KMKCKNCCDSYEEYDVEKI 1349
>sp|K9N5Q8|SPIKE_MERS1 Spike glycoprotein OS=Middle East respiratory
syndrome-related coronavirus (isolate United Kingdom/H123990006/2012)
OX=1263720 GN=S PE=1 SV=1
Length=1353
Score = 1094 bits (2830), Expect = 0.0, Method: Composition-based stats.
Identities = 375/1167 (32%), Positives = 563/1167 (48%), Gaps = 86/1167 (7%)
Query 136 PFFAVSKPMGTQTHTMI----FDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKD 191
P S + ++ + N NCTF Y + +++E L F
Sbjct 210 PATDCSDGNYNRNASLNSFKEYFNLRNCTFMY-----TYNITEDEI----LEWFGITQTA 260
Query 192 GFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITNFRAILTAFSPAQDIWGTSAAA 251
++++ +D+ F T LP+ I + I + Q AA
Sbjct 261 QGVHLFSSR-YVDLYGGNMFQFAT------LPVYDTIKYYSIIPHSIRSIQSDRKAW-AA 312
Query 252 YFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSG 311
++V L+P TF+L + +G I A+DC N L++L CS +SF+++ G+Y S+F PSG
Sbjct 313 FYVYKLQPLTFLLDFSVDGYIRRAIDCGFNDLSQLHCSYESFDVESGVYSVSSFEAKPSG 372
Query 312 DVVRFPNITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSA 371
VV C F + + T P VY ++R +NC + + L + + F C +S
Sbjct 373 SVVEQAEGVE-CDFSPLLSGTP-PQVYNFKRLVFTNCNYNLTKLLSLFSVNDFTCSQISP 430
Query 372 TKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGC-VLAWNTRNID- 429
+ C+S++ D F ++ G I+ +NYK C +LA N+
Sbjct 431 AAIASNCYSSLILDYFSYPLSMKSDLSVSSAGPISQFNYKQSFSNPTCLILATVPHNLTT 490
Query 430 ATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDG---KPCTPPALNCYWPLNDY----- 481
T Y+Y + R D + VP + PC + W DY
Sbjct 491 ITKPLKYSYINKCSR-----FLSDDRTEVPQLVNANQYSPCVSIVPSTVWEDGDYYRKQL 545
Query 482 ------GFYTTTGIGYQPYRVVVLSFELLNAPAT----VCG-----PKLSTDLIKNQCVN 526
G+ +G + + F + T VC CV
Sbjct 546 SPLEGGGWLVASGSTVAMTEQLQMGFGITVQYGTDTNSVCPKLEFANDTKIASQLGNCVE 605
Query 527 FNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITP 586
++ G++G GV + Q+F D + C VSVI
Sbjct 606 YSLYGVSGRGVFQNCTAVGVRQQRFVYDAYQNLVGYYS-DDGNYYCLRACVSVPVSVIYD 664
Query 587 GTNASSEVAVLYQDVNCTDVSTAIH--ADQLTPAWRIYSTGNNVFQTQAGCLIGAEHVDT 644
+ A L+ V C +S+ + + + + QT GC++G +
Sbjct 665 KETKT--HATLFGSVACEHISSTMSQYSRSTRSMLKRRDSTYGPLQTPVGCVLGLVNSSL 722
Query 645 SYE-CDIPIGAGICASYHTVSLLRSTSQKSI--------VAYTMSLGADSSIAYSNNTIA 695
E C +P+G +CA T S L S +S+ +A+ + D + S ++
Sbjct 723 FVEDCKLPLGQSLCALPDTPSTLTPRSVRSVPGEMRLASIAFNHPIQVDQ-LNSSYFKLS 781
Query 696 IPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAE 755
IPTNFS +T E + ++ K +VDC Y+C +C LL +YG FC+++N+AL G
Sbjct 782 IPTNFSFGVTQEYIQTTIQKVTVDCKQYVCNGFQKCEQLLREYGQFCSKINQALHGANLR 841
Query 756 QDRNTREVFAQVKQMYKTPTLKYFGG-FNFSQILP---DPLKPTKRSFIEDLLFNKVTLA 811
QD + R +FA VK +P + FGG FN + + P + RS IEDLLF+KVT+A
Sbjct 842 QDDSVRNLFASVKSSQSSPIIPGFGGDFNLTLLEPVSISTGSRSARSAIEDLLFDKVTIA 901
Query 812 DAGFMKQYGECL--GDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWT 869
D G+M+ Y +C+ G +ARDLICAQ G VLPPL+ +M AAYT++L+ A GWT
Sbjct 902 DPGYMQGYDDCMQQGPASARDLICAQYVAGYKVLPPLMDVNMEAAYTSSLLGSIAGVGWT 961
Query 870 FGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGK 929
G + IPFA + YR NG+G+TQ VL ENQK IAN+FN+A+ +Q TTT+ A K
Sbjct 962 AGLSSFAAIPFAQSIFYRLNGVGITQQVLSENQKLIANKFNQALGAMQTGFTTTNEAFHK 1021
Query 930 LQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTY 989
+QD VN NAQAL+ L +LS+ FGAIS+ + DI+ RLD +E + QIDRLI GRL +L +
Sbjct 1022 VQDAVNNNAQALSKLASELSNTFGAISASIGDIIQRLDVLEQDAQIDRLINGRLTTLNAF 1081
Query 990 VTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTY 1049
V QQL+R+ SA LA K++ECV QSKR FCG+G H++SF AP+G+ F+HV Y
Sbjct 1082 VAQQLVRSESAALSAQLAKDKVNECVKAQSKRSGFCGQGTHIVSFVVNAPNGLYFMHVGY 1141
Query 1050 VPSQERNFTTAPAICHEG---KAYFPREGVFVFNGTS-----WFITQRNFFSPQIITTDN 1101
PS +A +C P G F+ + W T +F++P+ IT+ N
Sbjct 1142 YPSNHIEVVSAYGLCDAANPTNCIAPVNGYFIKTNNTRIVDEWSYTGSSFYAPEPITSLN 1201
Query 1102 TFVSGNCDVVIGIINNTVYDPLQPELD--SFKEELDKYFKNHTSPDVDLGDISGINASVV 1159
T V I+ + PL F++ELD++FKN ++ + G ++ IN +++
Sbjct 1202 TKYVAP-QVTYQNISTNLPPPLLGNSTGIDFQDELDEFFKNVSTSIPNFGSLTQINTTLL 1260
Query 1160 NIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCM 1219
++ E+ L +V K LNES IDL+ELG Y Y KWPWY+WLGFIAGL+A+ + + C
Sbjct 1261 DLTYEMLSLQQVVKALNESYIDLKELGNYTYYNKWPWYIWLGFIAGLVALALCVFFILCC 1320
Query 1220 TSCCSCLKGACSCGSCCK-FDEDDSEP 1245
T C + G C CC ++E D EP
Sbjct 1321 TGCGTNCMGKLKCNRCCDRYEEYDLEP 1347
>sp|P25192|SPIKE_CVBLY Spike glycoprotein OS=Bovine coronavirus
(strain LY-138) OX=11131 GN=S PE=3 SV=1
Length=1363
Score = 948 bits (2449), Expect = 0.0, Method: Composition-based stats.
Identities = 300/869 (35%), Positives = 443/869 (51%), Gaps = 59/869 (7%)
Query 409 NYKLPDDFMGCVLAWNTRNIDATSTGNYN-YKYRYLRHGKLRPFERDISNVPFSPDGKPC 467
NY + C I + STG Y + +YL I + + C
Sbjct 520 NYLTCHNAAQCDCLCTPDPITSKSTGPYKCPQTKYLVGIGEHCSGLAIKSDYCGGNPCTC 579
Query 468 TPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLN--APATVCGPKL---STDLIKN 522
P A G+ + + R + + +L+ T C L +TD+I
Sbjct 580 QPQAF--------LGWSVDSCLQGD--RCNIFANFILHDVNSGTTCSTDLQKSNTDIILG 629
Query 523 QCVNFNFNGLTGTGVLTP-SSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGV 581
CVN++ G+TG G+ ++ + +Q D + RD T+ I C G V
Sbjct 630 VCVNYDLYGITGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYLTNRTFMIRSCYSGRV 689
Query 582 SVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIGAEH 641
S SSE A+L++++ C V + QL P N F + GC++ A++
Sbjct 690 SAAFHAN--SSEPALLFRNIKCNYVFNNTLSRQLQPI--------NYFDSYLGCVVNADN 739
Query 642 VDTS--YECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNT------ 693
+S CD+ +G+G C Y T R + + Y + ++ N++
Sbjct 740 STSSAVQTCDLTVGSGYCVDYST---KRRSRRAITTGYRFTNFEPFTVNSVNDSLEPVGG 796
Query 694 ---IAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALS 750
I IP+ F+I E + +S K ++DC+ ++CGD C + L++YGSFC +N L+
Sbjct 797 LYEIQIPSEFTIGNMEEFIQISSPKVTIDCSAFVCGDYAACKSQLVEYGSFCDNINAILT 856
Query 751 GIAAEQDRNTREVFAQVKQMYKTPTLKYFG------GFNFSQILP----DPLKPTKRSFI 800
+ D +V + T G NFS +L D K + RS I
Sbjct 857 EVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSDCNKVSSRSAI 916
Query 801 EDLLFNKVTLADAGFMKQYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALV 860
EDLLF+KV L+D GF++ Y C G RDLIC Q +NG+ VLPPLL+++ I+ YT A
Sbjct 917 EDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSENQISGYTLAAT 976
Query 861 SGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESL 920
S + W+ AG +PF + + YR NGIGVT +VL +NQK IAN FN A+ IQE
Sbjct 977 SASLFPPWSAAAG----VPFYLNVQYRINGIGVTMDVLSQNQKLIANAFNNALDAIQEGF 1032
Query 921 TTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLIT 980
T++AL K+Q VVN NA+ALN L++QLS+ FGAISS L +ILSRLD +EA+ QIDRLI
Sbjct 1033 DATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISSSLQEILSRLDALEAQAQIDRLIN 1092
Query 981 GRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPH 1040
GRL +L YV+QQL + ++ SA A K++ECV QS R++FCG G H++S Q AP+
Sbjct 1093 GRLTALNAYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNHIISLVQNAPY 1152
Query 1041 GVVFLHVTYVPSQERNFTTAPAICHEG-KAYFPREGVFVFNGTSWFITQRNFFSPQIITT 1099
G+ F+H +YVP++ +P +C G + P+ G FV +W T ++ P+ IT
Sbjct 1153 GLYFIHFSYVPTKYVTAKVSPGLCIAGDRGIAPKSGYFVNVNNTWMFTGSGYYYPEPITG 1212
Query 1100 DNTFVSGNCDVVIGIINNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVV 1159
+N V C V + + + P L FKEELD++FKN TS DL + IN + +
Sbjct 1213 NNVVVMSTCAVNYTKAPDVMLNISTPNLPDFKEELDQWFKNQTSVAPDL-SLDYINVTFL 1271
Query 1160 NIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCM 1219
++Q E++RL E K LN+S I+L+++G YE Y+KWPWYVWL + GL + M+ +L
Sbjct 1272 DLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWL--LIGLAGVAMLVLLFFIC 1329
Query 1220 TSCCSCLKGACSCGSCCKFDEDDSEPVLK 1248
CG CC E V+K
Sbjct 1330 CCTGCGTSCFKKCGGCCDDYTGHQELVIK 1358
Score = 459 bits (1181), Expect = 1e-138, Method: Composition-based stats.
Identities = 131/584 (22%), Positives = 218/584 (37%), Gaps = 101/584 (17%)
Query 1 MFIFLLF-LTLTSGSDLD-RCTTFD----DVQAPNYTQHTSS---MRGVYYPDEIFRSDT 51
MF+ LL L + D +CTT D P+ + T G YY D
Sbjct 1 MFLILLISLPMALAVIGDLKCTTVSINDVDTGVPSVSTDTVDVTNGLGTYYV-----LDR 55
Query 52 LYLTQDLFLPFYSNVTGFHTINHT----------FGNP--VIPFKDGIYFAATEKSNVVR 99
+YL L L Y +G N + P + F +GI FA + + V++
Sbjct 56 VYLNTTLLLNGYYPTSGSTYRNMALKGTLLLSTLWFKPPFLSDFINGI-FAKVKNTKVIK 114
Query 100 GWV---------FGSTMNNKSQSVIIINNSTNV--------VIRACNFELCDNPFFAVSK 142
V GST N S SV++ ++TN+ I C + +C+ P
Sbjct 115 NGVMYSEFPAITIGSTFVNTSYSVVVQPHTTNLDNKLQGLLEISVCQYTMCEYPHTICHP 174
Query 143 PMGTQTHTMIF--DNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGY 200
+G + + +C ++ F+ DV+ F F + G Y Y +
Sbjct 175 NLGNRRIELWHWDTGVVSCLYK---RNFTYDVNAD------YLYFHFYQEGGTFYAY--F 223
Query 201 QPIDVVRDLPSGFNTLKPIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPT 260
VV K +F + LG ++++ + + A + Y+V L
Sbjct 224 TDTGVVT---------KFLFNVYLGTVLSHYYVMPLTCNSAMTL------EYWVTPLTSK 268
Query 261 TFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVR-FPNI 319
++L ++++G I +AVDC + ++E+KC S G+Y+ + + V P DV R PN+
Sbjct 269 QYLLAFNQDGVIFNAVDCKSDFMSEIKCKTLSIAPSTGVYELNGYTVQPIADVYRRIPNL 328
Query 320 TNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCF 379
+ C N PS WERK SNC + S L + +F C + A K+ +CF
Sbjct 329 PD-CNIEAWLNDKSVPSPLNWERKTFSNCNFNMSSLMSFIQADSFTCNNIDAAKIYGMCF 387
Query 380 SNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDAT----STGN 435
S++ D F + + G G + +NY++ C L +N + + +
Sbjct 388 SSITIDKFAIPNGRKVDLQLGNLGYLQSFNYRIDTTATSCQLYYNLPAANVSVSRFNPST 447
Query 436 YNYKYRYLRHGKLRP-----------------FERDISNVPFSPDGKPCTPPALNCYWPL 478
+N ++ + +P F+ + P DG C
Sbjct 448 WNRRFGFTEQSVFKPQPVGVFTDHDVVYAQHCFKAPTNFCPCKLDGSLCVGSG-----SG 502
Query 479 NDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKN 522
D G Y +GIG P L+ +C P T
Sbjct 503 IDAG-YKNSGIGTCPAGTNYLTCHNAAQCDCLCTPDPITSKSTG 545
>sp|Q9QAQ8|SPIKE_CVBOK Spike glycoprotein OS=Bovine coronavirus
(strain OK-0514) OX=231432 GN=S PE=3 SV=1
Length=1363
Score = 946 bits (2446), Expect = 0.0, Method: Composition-based stats.
Identities = 297/866 (34%), Positives = 436/866 (50%), Gaps = 53/866 (6%)
Query 409 NYKLPDDFMGCVLAWNTRNIDATSTGNYN-YKYRYLRHGKLRPFERDISNVPFSPDGKPC 467
NY + C I + +TG Y + +YL I + + C
Sbjct 520 NYLTCHNAAQCGCLCTPDPITSKATGPYKCPQTKYLVGIGEHCSGLAIKSDYCGGNPCSC 579
Query 468 TPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLN--APATVCGPKL---STDLIKN 522
P A G+ + + R + + +L+ T C L +TD+I
Sbjct 580 RPQAF--------LGWSVDSCLQGD--RCNIFANFILHDVNSGTTCSTDLQKSNTDIILG 629
Query 523 QCVNFNFNGLTGTGVLTP-SSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGV 581
CVN++ G+TG G+ ++ + +Q D + RD T+ I C G V
Sbjct 630 VCVNYDLYGITGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYLTNRTFMIRSCYSGRV 689
Query 582 SVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIGAEH 641
S SSE A+L++++ C V + QL P N F + GC++ A++
Sbjct 690 SAAFHAN--SSEPALLFRNIKCNYVFNNTLSRQLQPI--------NYFDSYLGCVVNADN 739
Query 642 VDTSY--ECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAY------SNNT 693
+S CD+ +G+G C Y T R + +S+
Sbjct 740 STSSVVQTCDLTVGSGYCVDYSTKRRSRRSITTGYRFTNFEPFTVNSVNDSLEPVGGLYE 799
Query 694 IAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIA 753
I IP+ F+I E + S K ++DC+ ++CGD C + L++YGSFC +N L+ +
Sbjct 800 IQIPSEFTIGNMEEFIQTSSPKVTIDCSAFVCGDYAACKSQLVEYGSFCDNINAILTEVN 859
Query 754 AEQDRNTREVFAQVKQMYKTPTLKYFG------GFNFSQILP----DPLKPTKRSFIEDL 803
D +V + T G NFS +L D K + RS IEDL
Sbjct 860 ELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSDCNKVSSRSAIEDL 919
Query 804 LFNKVTLADAGFMKQYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGT 863
LF+KV L+D GF++ Y C G RDLIC Q +NG+ VLPPLL+++ I+ YT A S +
Sbjct 920 LFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSENQISGYTLAATSAS 979
Query 864 ATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTT 923
W+ AG +PF + + YR NGIGVT +VL +NQK IAN FN A+ IQE T
Sbjct 980 LFPPWSAAAG----VPFYLNVQYRINGIGVTMDVLSQNQKLIANAFNNALGAIQEGFDAT 1035
Query 924 STALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRL 983
++AL K+Q VVN NA+ALN L++QLS+ FGAISS L +ILSRLD +EA+ QIDRLI GRL
Sbjct 1036 NSALVKIQAVVNANAEALNNLLQQLSNRFGAISSSLQEILSRLDALEAQAQIDRLINGRL 1095
Query 984 QSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVV 1043
+L YV+QQL + ++ SA A K++ECV QS R++FCG G H++S Q AP+G+
Sbjct 1096 TALNAYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNHIISLVQNAPYGLY 1155
Query 1044 FLHVTYVPSQERNFTTAPAICHEG-KAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNT 1102
F+H +YVP++ +P +C G + P+ G FV +W T ++ P+ IT +N
Sbjct 1156 FIHFSYVPTKYVTAKVSPGLCIAGDRGIAPKSGYFVNVNNTWMFTGSGYYYPEPITGNNV 1215
Query 1103 FVSGNCDVVIGIINNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQ 1162
V C V + + + P L FKEELD++FKN TS DL + IN + +++Q
Sbjct 1216 VVMSTCAVNYTKAPDVMLNISTPNLPDFKEELDQWFKNQTSVAPDL-SLDYINVTFLDLQ 1274
Query 1163 KEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSC 1222
E++RL E K LN+S I+L+++G YE Y+KWPWYVWL + G + M+ +L
Sbjct 1275 DEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWL--LIGFAGVAMLVLLFFICCCT 1332
Query 1223 CSCLKGACSCGSCCKFDEDDSEPVLK 1248
CG CC E V+K
Sbjct 1333 GCGTSCFKKCGGCCDDYTGHQELVIK 1358
Score = 457 bits (1175), Expect = 1e-137, Method: Composition-based stats.
Identities = 133/584 (23%), Positives = 218/584 (37%), Gaps = 101/584 (17%)
Query 1 MFIFLLF-LTLTSGSDLD-RCTTFD----DVQAPNYTQHTSS---MRGVYYPDEIFRSDT 51
MF+ LL L D +CTT D P+ + T G YY D
Sbjct 1 MFLILLISLPTAFAVIGDLKCTTVSINDVDTGVPSISTDTVDVTNGLGTYYV-----LDR 55
Query 52 LYLTQDLFLPFYSNVTGFHTINHT----------FGNP--VIPFKDGIYFAATEKSNVVR 99
+YL L L Y +G N + P + F +GI FA + + V++
Sbjct 56 VYLNTTLLLNGYYPTSGSTYRNMALKGTLLLSTLWFKPPFLSDFTNGI-FAKVKNTKVIK 114
Query 100 GWV---------FGSTMNNKSQSVIIINNSTNV--------VIRACNFELCDNPFFAVSK 142
V GST N S SV++ ++TN+ I C + +C+ P +
Sbjct 115 DGVKYSEFPAITIGSTFVNTSYSVVVQPHTTNLDNKLQGLLEISVCQYTMCEYPNTICNP 174
Query 143 PMGTQTHTMIF--DNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGY 200
+G Q + +C ++ F+ DV+ F F + G Y Y +
Sbjct 175 NLGNQRVELWHWDTGVVSCLYK---RNFTYDVNAD------YLYFHFYQEGGTFYAY--F 223
Query 201 QPIDVVRDLPSGFNTLKPIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPT 260
VV K +F + LG ++++ + + A + Y+V L
Sbjct 224 TDTGVVT---------KFLFNVYLGTVLSHYYVMPLTCNSAMTL------EYWVTPLTSK 268
Query 261 TFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVR-FPNI 319
++L ++++G I +AVDC + ++E+KC S G+Y+ + + V P DV R PN+
Sbjct 269 QYLLAFNQDGVIFNAVDCKSDFMSEIKCKTLSIAPSTGVYELNGYTVQPIADVYRRIPNL 328
Query 320 TNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCF 379
+ C N PS WERK SNC + S L + +F C + A K+ +CF
Sbjct 329 PD-CNIEAWLNDKSVPSPLNWERKTFSNCNFNMSSLMSFIQADSFTCNNIDAAKIYGMCF 387
Query 380 SNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDAT----STGN 435
S++ D F + + G G + +NY++ C L +N + + +
Sbjct 388 SSITIDKFAIPNGRKVDLQLGNLGYLQSFNYRIDTTATSCQLYYNLPAANVSVSRFNPSI 447
Query 436 YNYKYRYLRHGKLRP-----------------FERDISNVPFSPDGKPCTPPALNCYWPL 478
+N ++ + +P F+ + P DG C
Sbjct 448 WNRRFGFTEQSVFKPQPAGVFTDHDVVYAQHCFKAPTNFCPCKLDGSLCVGSG-----SG 502
Query 479 NDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKN 522
D G Y TGIG P L+ +C P T
Sbjct 503 IDAG-YKNTGIGTCPAGTNYLTCHNAAQCGCLCTPDPITSKATG 545
>sp|Q8V436|SPIKE_CVBLU Spike glycoprotein OS=Bovine coronavirus
(strain 98TXSF-110-LUN) OX=233264 GN=S PE=3 SV=1
Length=1363
Score = 946 bits (2446), Expect = 0.0, Method: Composition-based stats.
Identities = 296/866 (34%), Positives = 435/866 (50%), Gaps = 53/866 (6%)
Query 409 NYKLPDDFMGCVLAWNTRNIDATSTGNYN-YKYRYLRHGKLRPFERDISNVPFSPDGKPC 467
NY + C I + +TG Y + +YL I + + C
Sbjct 520 NYLTCHNAAQCDCLCTPDPITSKATGPYKCPQTKYLVGIGEHCSGLAIKSDHCGGNPCTC 579
Query 468 TPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLN--APATVCGPKL---STDLIKN 522
P A G+ + + R + + +L+ T C L +TD+I
Sbjct 580 QPQAF--------LGWSVDSCLQGD--RCNIFANFILHDVNSGTTCSTDLQKSNTDIILG 629
Query 523 QCVNFNFNGLTGTGVLTP-SSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGV 581
CVN++ G+TG G+ ++ + +Q D + RD T+ I C G V
Sbjct 630 VCVNYDLYGITGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYLTNRTFMIRSCYSGRV 689
Query 582 SVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIGAEH 641
S SSE A+L++++ C V + QL P N F + GC++ A++
Sbjct 690 SAAFHAN--SSEPALLFRNIKCNYVFNNTLSRQLQPI--------NYFDSYLGCVVNADN 739
Query 642 VDTSY--ECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAY------SNNT 693
+S CD+ +G+G C Y T R + +S+
Sbjct 740 STSSVVQTCDLTVGSGYCVDYSTKRRSRRSITTGYRFTNFEPFTVNSVNDSLEPVGGLYE 799
Query 694 IAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIA 753
I IP+ F+I E + S K ++DC+ ++CGD C + L++YGSFC +N L+ +
Sbjct 800 IQIPSEFTIGNMEEFIQTSSPKVTIDCSAFVCGDYAACKSQLVEYGSFCDNINAILTEVN 859
Query 754 AEQDRNTREVFAQVKQMYKTPTLKYFG------GFNFSQILP----DPLKPTKRSFIEDL 803
D +V + T G NFS +L D K + RS IEDL
Sbjct 860 ELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSDCNKVSSRSAIEDL 919
Query 804 LFNKVTLADAGFMKQYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGT 863
LF+KV L+D GF++ Y C G RDLIC Q +NG+ VLPPLL+++ I+ YT A S +
Sbjct 920 LFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSENQISGYTLAATSAS 979
Query 864 ATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTT 923
W+ AG +PF + + YR NGIGVT +VL +NQK IAN FN A+ IQE T
Sbjct 980 LFPPWSAAAG----VPFYLNVQYRINGIGVTMDVLSQNQKLIANAFNNALGAIQEGFDAT 1035
Query 924 STALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRL 983
++AL K+Q VVN NA+ LN L++QLS+ FGAISS L +ILSRLD +EA+ QIDRLI GRL
Sbjct 1036 NSALVKIQAVVNANAETLNNLLQQLSNRFGAISSSLQEILSRLDALEAQAQIDRLINGRL 1095
Query 984 QSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVV 1043
+L YV+QQL + ++ SA A K++ECV QS R++FCG G H++S Q AP+G+
Sbjct 1096 TALNAYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNHIISLVQNAPYGLY 1155
Query 1044 FLHVTYVPSQERNFTTAPAICHE-GKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNT 1102
F+H +YVP++ +P +C G+ P+ G FV +W T ++ P+ IT +N
Sbjct 1156 FIHFSYVPTKYVTAKVSPGLCIAGGRGIAPKSGYFVNVNNTWMFTGSGYYYPEPITGNNV 1215
Query 1103 FVSGNCDVVIGIINNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQ 1162
V C V + + + P L FKEELD++FKN TS DL + IN + +++Q
Sbjct 1216 VVMSTCAVNYTKAPDVMLNISTPNLPDFKEELDQWFKNQTSVAPDL-SLDYINVTFLDLQ 1274
Query 1163 KEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSC 1222
E++RL E K LN+S I+L+++G YE Y+KWPWYVWL + G + M+ +L
Sbjct 1275 DEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWL--LIGFAGVAMLVLLFFICCCT 1332
Query 1223 CSCLKGACSCGSCCKFDEDDSEPVLK 1248
CG CC E V+K
Sbjct 1333 GCGTSCFKKCGGCCDDYTGHQELVIK 1358
Score = 459 bits (1182), Expect = 1e-138, Method: Composition-based stats.
Identities = 132/584 (23%), Positives = 220/584 (38%), Gaps = 101/584 (17%)
Query 1 MFIFLLF-LTLTSGSDLD-RCTTFD----DVQAPNYTQHT---SSMRGVYYPDEIFRSDT 51
MF+ LL L D +CTT D P+ + T + G YY D
Sbjct 1 MFLILLISLPTAFAVIGDLKCTTVSINDVDTGVPSISTDTVDVTKGLGTYYV-----LDR 55
Query 52 LYLTQDLFLPFYSNVTGFHTINHT----------FGNP--VIPFKDGIYFAATEKSNVVR 99
+YL L L Y +G N + P + F +GI FA + + V++
Sbjct 56 VYLNTTLLLNGYYPTSGSTYRNMALKGTLLLSTLWFKPPFLSDFTNGI-FAKVKNTKVIK 114
Query 100 GWV---------FGSTMNNKSQSVIIINNSTNV--------VIRACNFELCDNPFFAVSK 142
V GST N S SV++ ++T + I C + +C+ P +
Sbjct 115 DGVMYSEFPAITIGSTFVNTSYSVVVQPHTTILGNKLQGFLEISVCQYTMCEYPNTICNP 174
Query 143 PMGTQTHTMIF--DNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGY 200
+G + + +C ++ F+ DV+ F F + G Y Y +
Sbjct 175 NLGNRRVELWHWDTGVVSCLYK---RNFTYDVNAD------YLYFHFYQEGGTFYAY--F 223
Query 201 QPIDVVRDLPSGFNTLKPIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPT 260
VV K +F + LG ++++ + + A + Y+V L
Sbjct 224 TDTGVVT---------KFLFNVYLGTVLSHYYVMPLTCNSALTL------EYWVTPLTSK 268
Query 261 TFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVR-FPNI 319
++L ++++G I +AVDC + ++E+KC S G+Y+ + + V P DV R PN+
Sbjct 269 QYLLAFNQDGVIFNAVDCKSDFMSEIKCKTLSIAPSTGVYELNGYTVQPIADVYRRIPNL 328
Query 320 TNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCF 379
+ C N PS WERK SNC + S L + +F C + A K+ +CF
Sbjct 329 PD-CNIEAWLNDKSVPSPLNWERKTFSNCNFNMSSLMSFIQADSFTCNNIDAAKIYGMCF 387
Query 380 SNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDAT----STGN 435
S++ D F + + G G + +NY++ C L +N + + +
Sbjct 388 SSITIDKFAIPNGRKVDLQLGNLGYLQSFNYRIDTTATSCQLYYNLPAANVSVSRFNPST 447
Query 436 YNYKYRYLRHGKLRP-----------------FERDISNVPFSPDGKPCTPPALNCYWPL 478
+N ++ + +P F+ + P DG C P
Sbjct 448 WNRRFGFTEQSVFKPQPAGVFTDHDVVYAQHCFKAPTNFCPCKLDGSLCVGNG-----PG 502
Query 479 NDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKN 522
D G Y T+GIG P L+ +C P T
Sbjct 503 IDAG-YKTSGIGTCPAGTNYLTCHNAAQCDCLCTPDPITSKATG 545
>sp|Q9QAR5|SPIKE_CVBLS Spike glycoprotein OS=Bovine coronavirus
(strain LSU-94LSS-051) OX=233261 GN=S PE=3 SV=1
Length=1363
Score = 944 bits (2439), Expect = 0.0, Method: Composition-based stats.
Identities = 297/866 (34%), Positives = 435/866 (50%), Gaps = 53/866 (6%)
Query 409 NYKLPDDFMGCVLAWNTRNIDATSTGNYN-YKYRYLRHGKLRPFERDISNVPFSPDGKPC 467
NY + C I + +TG Y + +YL I + + C
Sbjct 520 NYLTCHNAAQCGCLCTPDPITSKATGPYKCPQTKYLVGIGEHCSGLAIKSDYCGGNPCSC 579
Query 468 TPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLN--APATVCGPKL---STDLIKN 522
P A G+ + + R + + +L+ T C L +TD+I
Sbjct 580 QPQAF--------LGWSVDSCLQGD--RCNIFANFILHDVNSGTTCSTDLQKSNTDIILG 629
Query 523 QCVNFNFNGLTGTGVLTP-SSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGV 581
CVN++ G+TG G+ ++ + +Q D + RD T+ I C G V
Sbjct 630 VCVNYDLYGITGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYLTNRTFMIRSCYSGRV 689
Query 582 SVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIGAEH 641
S SSE A+L+++ C V + QL P N F + GC++ A++
Sbjct 690 SAAFHAN--SSEPALLFRNFKCNYVFNNTLSRQLQPI--------NYFDSYLGCVVNADN 739
Query 642 VDTSY--ECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAY------SNNT 693
+S CD+ +G+G C Y T R + +S+
Sbjct 740 STSSVVQTCDLTVGSGYCVDYSTKRRSRRSITTGYRFTNFEPFTVNSVNDSLEPVGGLYE 799
Query 694 IAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIA 753
I IP+ F+I E + S K ++DC+ ++CGD C + L++YGSFC +N L+ +
Sbjct 800 IQIPSEFTIGNMEEFIQTSSPKVTIDCSAFVCGDYAACKSQLVEYGSFCDNINAILTEVN 859
Query 754 AEQDRNTREVFAQVKQMYKTPTLKYFG------GFNFSQILP----DPLKPTKRSFIEDL 803
D +V + T G NFS +L D K + RS IEDL
Sbjct 860 ELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSDCNKVSSRSAIEDL 919
Query 804 LFNKVTLADAGFMKQYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGT 863
LF+KV L+D GF++ Y C G RDLIC Q +NG+ VLPPLL+++ I+ YT A S +
Sbjct 920 LFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSENQISGYTLAATSAS 979
Query 864 ATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTT 923
W+ AG +PF + + YR NGIGVT +VL +NQK IAN FN A+ IQE T
Sbjct 980 LFPPWSAAAG----VPFYLNVQYRINGIGVTMDVLSQNQKLIANAFNNALGAIQEGFDAT 1035
Query 924 STALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRL 983
++AL K+Q VVN NA+ALN L++QLS+ FGAISS L +ILSRLD +EA+ QIDRLI GRL
Sbjct 1036 NSALVKIQAVVNANAEALNNLLQQLSNRFGAISSSLQEILSRLDALEAQAQIDRLINGRL 1095
Query 984 QSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVV 1043
+L YV+QQL + ++ SA A K++ECV QS R++FCG G H++S Q AP+G+
Sbjct 1096 TALNAYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNHIISLVQNAPYGLY 1155
Query 1044 FLHVTYVPSQERNFTTAPAICHEG-KAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNT 1102
F+H +YVP++ +P +C G + P+ G FV +W T ++ P+ IT +N
Sbjct 1156 FIHFSYVPTKYVTAKVSPGLCIAGDRGIAPKSGYFVNVNNTWMFTGSGYYYPEPITGNNV 1215
Query 1103 FVSGNCDVVIGIINNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQ 1162
V C V + + + P L FKEELD++FKN TS DL + IN + +++Q
Sbjct 1216 VVMSTCAVNYTKAPDVMLNISTPNLPDFKEELDQWFKNQTSVAPDL-SLDYINVTFLDLQ 1274
Query 1163 KEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSC 1222
E++RL E K LN+S I+L+++G YE Y+KWPWYVWL + G + M+ +L
Sbjct 1275 DEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWL--LIGFAGVAMLVLLFFICCCT 1332
Query 1223 CSCLKGACSCGSCCKFDEDDSEPVLK 1248
CG CC E V+K
Sbjct 1333 GCGTSCFKKCGGCCDDYTGHQELVIK 1358
Score = 458 bits (1177), Expect = 7e-138, Method: Composition-based stats.
Identities = 133/584 (23%), Positives = 218/584 (37%), Gaps = 101/584 (17%)
Query 1 MFIFLLF-LTLTSGSDLD-RCTTFD----DVQAPNYTQHTSS---MRGVYYPDEIFRSDT 51
MF+ LL L D +CTT D P+ + T G YY D
Sbjct 1 MFLILLISLPTAFAVIGDLKCTTVSINDVDTGVPSISTDTVDVTNGLGTYYV-----LDR 55
Query 52 LYLTQDLFLPFYSNVTGFHTINHT----------FGNP--VIPFKDGIYFAATEKSNVVR 99
+YL L L Y +G N + P + F +GI FA + + V++
Sbjct 56 VYLNTTLLLNGYYPTSGSTYRNMALKGTLLLSTLWFKPPFLSDFTNGI-FAKVKNTKVIK 114
Query 100 GWV---------FGSTMNNKSQSVIIINNSTNV--------VIRACNFELCDNPFFAVSK 142
V GST N S SV++ ++TN+ I C + +C+ P +
Sbjct 115 DGVKYSEFPAITIGSTFVNTSYSVVVQPHTTNLDNKLQGLLEISVCQYTMCEYPNTICNP 174
Query 143 PMGTQTHTMIF--DNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGY 200
+G Q + +C ++ F+ DV+ F F + G Y Y +
Sbjct 175 NLGNQRVELWHWDTGVVSCLYK---RNFTYDVNAD------YLYFHFYQEGGTFYAY--F 223
Query 201 QPIDVVRDLPSGFNTLKPIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPT 260
VV K +F + LG ++++ + + A + Y+V L
Sbjct 224 TDTGVVT---------KFLFNVYLGTVLSHYYVMPLTCNSALTL------EYWVTPLTSK 268
Query 261 TFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVR-FPNI 319
++L ++++G I +AVDC + ++E+KC S G+Y+ + + V P DV R PN+
Sbjct 269 QYLLAFNQDGVIFNAVDCKSDFMSEIKCKTLSIAPSTGVYELNGYTVQPIADVYRRIPNL 328
Query 320 TNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCF 379
+ C N PS WERK SNC + S L + +F C + A K+ +CF
Sbjct 329 PD-CNIEAWLNDKSVPSPLNWERKTFSNCNFNMSSLMSFIQADSFTCNNIDAAKIYGMCF 387
Query 380 SNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDAT----STGN 435
S++ D F + + G G + +NY++ C L +N + + +
Sbjct 388 SSITIDKFAIPNGRKVDLQLGNLGYLQSFNYRIDTTATSCQLYYNLPAANVSVSRFNPST 447
Query 436 YNYKYRYLRHGKLRP-----------------FERDISNVPFSPDGKPCTPPALNCYWPL 478
+N ++ + +P F+ + P DG C
Sbjct 448 WNRRFGFTEQSVFKPQPAGVFTDHDVVYAQHCFKAPTNFCPCKLDGSLCVGSG-----SG 502
Query 479 NDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKN 522
D G Y TGIG P L+ +C P T
Sbjct 503 IDAG-YKNTGIGTCPAGTNYLTCHNAAQCGCLCTPDPITSKATG 545
>sp|Q91A26|SPIKE_CVBEN Spike glycoprotein OS=Bovine coronavirus
(strain 98TXSF-110-ENT) OX=233262 GN=S PE=3 SV=1
Length=1363
Score = 943 bits (2438), Expect = 0.0, Method: Composition-based stats.
Identities = 297/866 (34%), Positives = 436/866 (50%), Gaps = 53/866 (6%)
Query 409 NYKLPDDFMGCVLAWNTRNIDATSTGNYN-YKYRYLRHGKLRPFERDISNVPFSPDGKPC 467
NY + C I + +TG Y + +YL I + + C
Sbjct 520 NYLTCHNAAQCDCLCTPDPITSKATGPYKCPQTKYLVGIGEHCSGLAIKSDHCGGNPCTC 579
Query 468 TPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLN--APATVCGPKL---STDLIKN 522
P A G+ + + R + + +L+ T C L +TD+I
Sbjct 580 QPQAF--------LGWSVDSCLQGD--RCNIFANFILHDVNSGTTCSTDLQKSNTDIILG 629
Query 523 QCVNFNFNGLTGTGVLTP-SSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGV 581
CVN++ G+TG G+ ++ + +Q D + RD T+ I C G V
Sbjct 630 VCVNYDLYGITGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYLTNRTFMIRSCYSGRV 689
Query 582 SVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIGAEH 641
S SSE A+L++++ C V + QL P N F + GC++ A++
Sbjct 690 SAAFHAN--SSEPALLFRNIKCNYVFNNTLSRQLQPI--------NYFDSYLGCVVNADN 739
Query 642 VDTSY--ECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAY------SNNT 693
+S CD+ +G+G C Y T R + +S+
Sbjct 740 STSSVVQTCDLTVGSGYCVDYSTKRRSRRSITTGYRFTNFEPFTVNSVNDSLEPVGGLYE 799
Query 694 IAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIA 753
I IP+ F+I E + S K ++DC+ ++CGD C + L++YGSFC +N L+ +
Sbjct 800 IQIPSEFTIGNMEEFIQTSSPKVTIDCSAFVCGDYAACKSQLVEYGSFCDNINAILTEVN 859
Query 754 AEQDRNTREVFAQVKQMYKTPTLKYFG------GFNFSQILP----DPLKPTKRSFIEDL 803
D +V + T G NFS +L D K + RS IEDL
Sbjct 860 ELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSDCNKVSSRSAIEDL 919
Query 804 LFNKVTLADAGFMKQYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGT 863
LF+KV L+D GF++ Y C G RDLIC Q +NG+ VLPPLL+++ I+ YT A S +
Sbjct 920 LFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSENQISGYTLAATSAS 979
Query 864 ATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTT 923
W+ AG +PF + + YR NGIGVT +VL +NQK IAN FN A+ IQE T
Sbjct 980 LFPPWSAAAG----VPFYLNVQYRINGIGVTMDVLSQNQKLIANAFNNALGAIQEGFDAT 1035
Query 924 STALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRL 983
++AL K+Q VVN NA+ALN L++QLS+ FGAISS L +ILSRLD +EA+ QIDRLI GRL
Sbjct 1036 NSALVKIQAVVNANAEALNNLLQQLSNRFGAISSSLQEILSRLDALEAQAQIDRLINGRL 1095
Query 984 QSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVV 1043
+L YV+QQL + ++ SA A K++ECV QS R++FCG G H++S Q AP+G+
Sbjct 1096 TALNAYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNHIISLVQNAPYGLY 1155
Query 1044 FLHVTYVPSQERNFTTAPAICHEG-KAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNT 1102
F+H +YVP++ +P +C G + P+ G FV +W T ++ P+ IT +N
Sbjct 1156 FIHFSYVPTKYVTAKVSPGLCIAGDRGIAPKSGYFVNVNNTWMFTGSGYYYPEPITGNNV 1215
Query 1103 FVSGNCDVVIGIINNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQ 1162
V C V + + + P L FKEELD++FKN TS DL + IN + +++Q
Sbjct 1216 VVMSTCAVNYTKAPDVMLNISTPNLPYFKEELDQWFKNQTSVAPDL-SLDYINVTFLDLQ 1274
Query 1163 KEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSC 1222
E++RL E K LN+S I+L+++G YE Y+KWPWYVWL + G + M+ +L
Sbjct 1275 DEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWL--LIGFAGVAMLVLLFFICCCT 1332
Query 1223 CSCLKGACSCGSCCKFDEDDSEPVLK 1248
CG CC E V+K
Sbjct 1333 GCGTSCFKKCGGCCDDYTGHQELVIK 1358
Score = 457 bits (1176), Expect = 9e-138, Method: Composition-based stats.
Identities = 133/584 (23%), Positives = 219/584 (38%), Gaps = 101/584 (17%)
Query 1 MFIFLLF-LTLTSGSDLD-RCTTFD----DVQAPNYTQHTSS---MRGVYYPDEIFRSDT 51
MF+ LL L D +CTT D P+ + T G YY D
Sbjct 1 MFLILLISLPTAFAVIGDLKCTTVSINDVDTGVPSISTDTVDVTNGLGTYYV-----LDR 55
Query 52 LYLTQDLFLPFYSNVTGFHTINHT----------FGNP--VIPFKDGIYFAATEKSNVVR 99
+YL L L Y +G N + P + F +GI FA + + V++
Sbjct 56 VYLNTTLLLNGYYPTSGSTYRNMALKGTLLLSTLWFKPPFLSDFTNGI-FAKVKNTKVIK 114
Query 100 GWV---------FGSTMNNKSQSVIIINNSTNV--------VIRACNFELCDNPFFAVSK 142
V GST N S SV++ ++T + I C + +C+ P +
Sbjct 115 DGVMYSEFPAITIGSTFVNTSYSVVVQPHTTILGNKLQGFLEISVCQYTMCEYPNTICNP 174
Query 143 PMGTQTHTMIF--DNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGY 200
+G Q + +C ++ F+ DV+ F F + G Y Y +
Sbjct 175 NLGNQRVELWHWDTGVVSCLYK---RNFTYDVNAD------YLYFHFYQEGGTFYAY--F 223
Query 201 QPIDVVRDLPSGFNTLKPIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPT 260
VV K +F + LG ++++ + + A + Y+V L
Sbjct 224 TDTGVVT---------KFLFNVYLGTVLSHYYVMPLTCNSALTL------EYWVTPLTSK 268
Query 261 TFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVR-FPNI 319
++L ++++G I +AVDC + ++E+KC S G+Y+ + + V P DV R PN+
Sbjct 269 QYLLAFNQDGVIFNAVDCKSDFMSEIKCKTLSIAPSTGVYELNGYTVQPIADVYRRIPNL 328
Query 320 TNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCF 379
+ C N PS WERK SNC + S L + +F C + A K+ +CF
Sbjct 329 PD-CNIEAWLNDKSVPSPLNWERKTFSNCNFNMSSLMSFIQAYSFTCNNIDAAKIYGMCF 387
Query 380 SNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDAT----STGN 435
S++ D F + + G G + +NY++ C L +N + + +
Sbjct 388 SSITIDKFAIPNGRKVDLQLGNLGYLQSFNYRIDTTATSCQLYYNLPAANVSVSRFNPST 447
Query 436 YNYKYRYLRHGKLRP-----------------FERDISNVPFSPDGKPCTPPALNCYWPL 478
+N ++ + +P F+ + P DG C P
Sbjct 448 WNRRFGFTEQSVFKPQPAGVFTDHDVVYAQHCFKASTNFCPCKLDGSLCVGNG-----PG 502
Query 479 NDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKN 522
D G Y T+GIG P L+ +C P T
Sbjct 503 IDAG-YKTSGIGTCPAGTNYLTCHNAAQCDCLCTPDPITSKATG 545
>sp|P25194|SPIKE_CVBV Spike glycoprotein OS=Bovine coronavirus
(strain vaccine) OX=11134 GN=S PE=3 SV=1
Length=1363
Score = 943 bits (2436), Expect = 0.0, Method: Composition-based stats.
Identities = 299/869 (34%), Positives = 440/869 (51%), Gaps = 59/869 (7%)
Query 409 NYKLPDDFMGCVLAWNTRNIDATSTGNYN-YKYRYLRHGKLRPFERDISNVPFSPDGKPC 467
NY + C I + STG Y + +YL I + + C
Sbjct 520 NYLTCHNAAQCDCLCTPDPITSKSTGPYKCPQTKYLVGIGEHCSGLAIKSDYCGGNPCTC 579
Query 468 TPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLN--APATVCGPKL---STDLIKN 522
P A G+ + + R + + +L+ T C L +TD+I
Sbjct 580 QPQAF--------LGWSVDSCLQGD--RCNIFANFILHDVNSGTTCSTDLQKSNTDIILG 629
Query 523 QCVNFNFNGLTGTGVLTP-SSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGV 581
CVN++ G+TG G+ ++ + +Q D + RD T+ I C G V
Sbjct 630 VCVNYDLYGITGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYLTNRTFMIRSCYSGRV 689
Query 582 SVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIGAEH 641
S SSE A+L++++ C V + QL P N F + GC++ A++
Sbjct 690 SAAFHAN--SSEPALLFRNIKCNYVFNNTLSRQLQPI--------NYFDSYLGCVVNADN 739
Query 642 VDTSY--ECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNT------ 693
+S CD+ +G+G C Y T R + + Y + ++ N++
Sbjct 740 STSSVVQTCDLTVGSGYCVDYST---KRRSRRAITTGYRFTNFEPFTVNSVNDSLEPVGG 796
Query 694 ---IAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALS 750
I IP+ F+I E + S K ++DC+ ++CGD C + L++YGSFC +N L+
Sbjct 797 LYEIQIPSEFTIGNMEEFIQTSSPKVTIDCSAFVCGDYAACKSQLVEYGSFCDNINAILT 856
Query 751 GIAAEQDRNTREVFAQVKQMYKTPTLKYFG------GFNFSQILP----DPLKPTKRSFI 800
+ D +V + T G NFS +L D K + RS I
Sbjct 857 EVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSDCNKVSSRSAI 916
Query 801 EDLLFNKVTLADAGFMKQYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALV 860
EDLLF+KV L+D GF++ Y C G RDLIC Q +NG+ VLPPLL+ + I+ YT A
Sbjct 917 EDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSVNQISGYTLAAT 976
Query 861 SGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESL 920
S + W+ AG +PF + + YR NGIGVT +VL +NQK IAN FN A+ IQE
Sbjct 977 SASLFPPWSAAAG----VPFYLNVQYRINGIGVTMDVLSQNQKLIANAFNNALDAIQEGF 1032
Query 921 TTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLIT 980
T++AL K+Q VVN NA+ALN L++QLS+ FGAISS L +ILSRLD +EA+ QIDRLI
Sbjct 1033 DATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISSSLQEILSRLDALEAQAQIDRLIN 1092
Query 981 GRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPH 1040
GRL +L YV+QQL + ++ SA A K++ECV QS R++FCG G H++S Q AP+
Sbjct 1093 GRLTALNAYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNHIISLVQNAPY 1152
Query 1041 GVVFLHVTYVPSQERNFTTAPAICHEG-KAYFPREGVFVFNGTSWFITQRNFFSPQIITT 1099
G+ F+H +YVP++ +P +C G + P+ G FV +W T ++ P+ IT
Sbjct 1153 GLYFIHFSYVPTKYVTAKVSPGLCIAGDRGIAPKSGYFVNVNNTWMFTGSGYYYPEPITG 1212
Query 1100 DNTFVSGNCDVVIGIINNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVV 1159
+N V C V + + + P L FKEELD++FKN TS DL + IN + +
Sbjct 1213 NNVVVMSTCAVNYTKAPDVMLNISTPNLHDFKEELDQWFKNQTSVAPDL-SLDYINVTFL 1271
Query 1160 NIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCM 1219
++Q E++RL E K LN+S I+L+++G YE Y+KWPWYVWL + G + M+ +L
Sbjct 1272 DLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWL--LIGFAGVAMLVLLFFIC 1329
Query 1220 TSCCSCLKGACSCGSCCKFDEDDSEPVLK 1248
CG CC E V+K
Sbjct 1330 CCTGCGTSCFKICGGCCDDYTGHQELVIK 1358
Score = 456 bits (1172), Expect = 3e-137, Method: Composition-based stats.
Identities = 133/584 (23%), Positives = 218/584 (37%), Gaps = 101/584 (17%)
Query 1 MFIFLLF-LTLTSGSDLD-RCTTFD----DVQAPNYTQHTSS---MRGVYYPDEIFRSDT 51
MF+ LL L + D +CTT D AP+ + T G YY D
Sbjct 1 MFLILLISLPMAFAVIGDLKCTTVSINDVDTGAPSISTDTVDVTNGLGTYYV-----LDR 55
Query 52 LYLTQDLFLPFYSNVTGFHTINHT----------FGNP--VIPFKDGIYFAATEKSNVVR 99
+YL L L Y +G N + P + F +GI FA + + V++
Sbjct 56 VYLNTTLLLNGYYPTSGSTYRNMALKGTLLLSRLWFKPPFLSDFINGI-FAKVKNTKVIK 114
Query 100 GWV---------FGSTMNNKSQSVIIINNSTNV--------VIRACNFELCDNPFFAVSK 142
V GST N S SV++ ++TN+ I C + +C+ P
Sbjct 115 KGVMYSEFPAITIGSTFVNTSYSVVVQPHTTNLDNKLQGLLEISVCQYTMCEYPHTICHP 174
Query 143 PMGTQTHTMIF--DNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGY 200
+G Q + +C ++ F+ DV+ F F + G Y Y +
Sbjct 175 NLGNQRVELWHWDTGVVSCLYK---RNFTYDVNAD------YLYFHFYQEGGTFYAY--F 223
Query 201 QPIDVVRDLPSGFNTLKPIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPT 260
VV K +F + LG ++++ + + Y+V L
Sbjct 224 TDTGVVT---------KFLFNVYLGTVLSHYYVLPLTC------YSAMTLEYWVTPLTSK 268
Query 261 TFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVR-FPNI 319
++L ++++G I +AVDC + ++E+KC S G+Y+ + + V P DV R PN+
Sbjct 269 QYLLAFNQDGVIFNAVDCKSDFMSEIKCKTLSIAPSTGVYELNGYTVQPIADVYRRIPNL 328
Query 320 TNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCF 379
+ C N PS WERK SNC + S L + +F C + A K+ +CF
Sbjct 329 PD-CNIEAWLNDKSVPSPLNWERKTFSNCNFNMSSLMSFIQADSFTCNNIEAAKIYGMCF 387
Query 380 SNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDAT----STGN 435
S++ D F + + G G + +NY++ C L +N + + +
Sbjct 388 SSITIDKFAIPNGRKVDLQLGNLGYLQSFNYRIDTTAASCQLYYNLPAANVSVSRFNPST 447
Query 436 YNYKYRYLRHGKLRP-----------------FERDISNVPFSPDGKPCTPPALNCYWPL 478
+N ++ + +P F+ + P DG C P
Sbjct 448 WNRRFGFTEQSVFKPQPVGVFTHHDVVYAQHCFKAPTNFCPCKLDGSLCVGNG-----PG 502
Query 479 NDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKN 522
D G Y +GIG P L+ +C P T
Sbjct 503 IDAG-YKNSGIGTCPAGTNYLTCHNAAQCDCLCTPDPITSKSTG 545
>sp|P25191|SPIKE_CVBL9 Spike glycoprotein OS=Bovine coronavirus
(strain L9) OX=11130 GN=S PE=1 SV=1
Length=1363
Score = 941 bits (2431), Expect = 0.0, Method: Composition-based stats.
Identities = 298/869 (34%), Positives = 438/869 (50%), Gaps = 59/869 (7%)
Query 409 NYKLPDDFMGCVLAWNTRNIDATSTGNYN-YKYRYLRHGKLRPFERDISNVPFSPDGKPC 467
NY + C I + STG Y + +YL I + + C
Sbjct 520 NYLTCHNAAQCDCLCTPDPITSKSTGPYKCPQTKYLVGIGEHCSGLAIKSDYCGGNPCTC 579
Query 468 TPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLN--APATVCGPKL---STDLIKN 522
P A G+ + + R + + +L+ T C L +TD+I
Sbjct 580 QPQAF--------LGWSVDSCLQGD--RCNIFANFILHDVNSGTTCSTDLQKSNTDIILG 629
Query 523 QCVNFNFNGLTGTGVLTPSSK-RFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGV 581
CVN++ G+TG G+ + + +Q D + RD T+ I C G V
Sbjct 630 VCVNYDLYGITGQGIFVEVNAPYYNSWQNLLYDSNGNLYGFRDYLTNRTFMIRSCYSGRV 689
Query 582 SVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIGAEH 641
S SSE A+L++++ C V + QL P N F + GC++ A++
Sbjct 690 SAAFHAN--SSEPALLFRNIKCNYVFNNTLSRQLQPI--------NYFDSYLGCVVNADN 739
Query 642 VDTSY--ECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNT------ 693
+S CD+ +G+G C Y T R + + Y + ++ N++
Sbjct 740 STSSVVQTCDLTVGSGYCVDYST---KRRSRRAITTGYRFTNFEPFTVNSVNDSLEPVGG 796
Query 694 ---IAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALS 750
I IP+ F+I E + S K ++DC+ ++CGD C + L++YGSFC +N L+
Sbjct 797 LYEIQIPSEFTIGNMEEFIQTSSPKVTIDCSAFVCGDYAACKSQLVEYGSFCDNINAILT 856
Query 751 GIAAEQDRNTREVFAQVKQMYKTPTLKYFG------GFNFSQILP----DPLKPTKRSFI 800
+ D +V + T G NFS +L D K + RS I
Sbjct 857 EVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSDCNKVSSRSAI 916
Query 801 EDLLFNKVTLADAGFMKQYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALV 860
EDLLF+KV L+D GF++ Y C G RDLIC Q +NG+ VLPPLL+ + I+ YT A
Sbjct 917 EDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSVNQISGYTLAAT 976
Query 861 SGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESL 920
S + W+ AG +PF + + YR NGIGVT +VL +NQK IAN FN A+ IQE
Sbjct 977 SASLFPPWSAAAG----VPFYLNVQYRINGIGVTMDVLSQNQKLIANAFNNALDAIQEGF 1032
Query 921 TTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLIT 980
T++AL K+Q VVN NA+ALN L++QLS+ FGAISS L +ILSRLD +EA+ QIDRLI
Sbjct 1033 DATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISSSLQEILSRLDALEAQAQIDRLIN 1092
Query 981 GRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPH 1040
GRL +L YV+QQL + ++ SA A K++ECV QS R++FCG G H++S Q AP+
Sbjct 1093 GRLTALNAYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNHIISLVQNAPY 1152
Query 1041 GVVFLHVTYVPSQERNFTTAPAICHEG-KAYFPREGVFVFNGTSWFITQRNFFSPQIITT 1099
G+ F+H +YVP++ +P +C G + P+ G FV +W T ++ P+ IT
Sbjct 1153 GLYFIHFSYVPTKYVTAKVSPGLCIAGDRGIAPKSGYFVNVNNTWMFTGSGYYYPEPITG 1212
Query 1100 DNTFVSGNCDVVIGIINNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVV 1159
+N V C + + + P L FKEELD++FKN TS DL + IN + +
Sbjct 1213 NNVVVMSTCAANYTKAPDVMLNISTPNLHDFKEELDQWFKNQTSVAPDL-SLDYINVTFL 1271
Query 1160 NIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCM 1219
++Q E++RL E K LN+S I+L+++G YE Y+KWPWYVWL + G + M+ +L
Sbjct 1272 DLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWL--LIGFAGVAMLVLLFFIC 1329
Query 1220 TSCCSCLKGACSCGSCCKFDEDDSEPVLK 1248
CG CC E V+K
Sbjct 1330 CCTGCGTSCFKICGGCCDDYTGHQELVIK 1358
Score = 457 bits (1176), Expect = 9e-138, Method: Composition-based stats.
Identities = 132/584 (23%), Positives = 219/584 (38%), Gaps = 101/584 (17%)
Query 1 MFIFLLF-LTLTSGSDLD-RCTTFD----DVQAPNYTQHTSS---MRGVYYPDEIFRSDT 51
MF+ LL L + D +CTT D AP+ + G YY D
Sbjct 1 MFLILLISLPMAFAVIGDLKCTTVSINDVDTGAPSISTDIVDVTNGLGTYYV-----LDR 55
Query 52 LYLTQDLFLPFYSNVTGFHTINHT----------FGNP--VIPFKDGIYFAATEKSNVVR 99
+YL L L Y +G N + P + F +GI FA + + V++
Sbjct 56 VYLNTTLLLNGYYPTSGSTYRNMALKGTLLLSRLWFKPPFLSDFINGI-FAKVKNTKVIK 114
Query 100 GWV---------FGSTMNNKSQSVIIINNSTNV--------VIRACNFELCDNPFFAVSK 142
V GST N S SV++ ++TN+ I C + +C+ P
Sbjct 115 KGVMYSEFPAITIGSTFVNTSYSVVVQPHTTNLDNKLQGLLEISVCQYTMCEYPHTICHP 174
Query 143 PMGTQTHTMIF--DNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGY 200
+G + + +C ++ F+ DV+ F F + G Y Y +
Sbjct 175 NLGNKRVELWHWDTGVVSCLYK---RNFTYDVNAD------YLYFHFYQEGGTFYAY--F 223
Query 201 QPIDVVRDLPSGFNTLKPIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPT 260
VV K +F + LG ++++ + + A + Y+V L
Sbjct 224 TDTGVVT---------KFLFNVYLGTVLSHYYVLPLTCNSAMTL------EYWVTPLTSK 268
Query 261 TFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVR-FPNI 319
++L ++++G I +AVDC + ++E+KC S G+Y+ + + V P DV R PN+
Sbjct 269 QYLLAFNQDGVIFNAVDCKSDFMSEIKCKTLSIAPSTGVYELNGYTVQPIADVYRRIPNL 328
Query 320 TNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCF 379
+ C N PS WERK SNC + S L + +F C + A K+ +CF
Sbjct 329 PD-CNIEAWLNDKSVPSPLNWERKTFSNCNFNMSCLMSFIQADSFTCNNIDAAKIYGMCF 387
Query 380 SNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDAT----STGN 435
S++ D F + + G G + +NY++ C L +N + + +
Sbjct 388 SSITIDKFAIPNGRKVDLQLGNLGYLQSFNYRIDTTATSCQLYYNLPAANVSVSRFNPST 447
Query 436 YNYKYRYLRHGKLRP-----------------FERDISNVPFSPDGKPCTPPALNCYWPL 478
+N ++ + +P F+ + P DG C P
Sbjct 448 WNRRFGFTEQSVFKPQPVGVFTHHDVVYAQHCFKAPTNFCPCKLDGSLCVGNG-----PG 502
Query 479 NDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKN 522
D G Y +GIG P L+ +C P T
Sbjct 503 IDAG-YKNSGIGTCPAGTNYLTCHNAAQCDCLCTPDPITSKSTG 545
>sp|P25190|SPIKE_CVBF Spike glycoprotein OS=Bovine coronavirus
(strain F15) OX=11129 GN=S PE=3 SV=1
Length=1363
Score = 940 bits (2430), Expect = 0.0, Method: Composition-based stats.
Identities = 297/869 (34%), Positives = 439/869 (51%), Gaps = 59/869 (7%)
Query 409 NYKLPDDFMGCVLAWNTRNIDATSTGNYN-YKYRYLRHGKLRPFERDISNVPFSPDGKPC 467
NY + C I + STG Y + +YL I + + C
Sbjct 520 NYLTCHNAAQCNCLCTPDPITSKSTGPYKCPQTKYLVGIGEHCSGLAIKSDYCGGNPCTC 579
Query 468 TPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLN--APATVCGPKL---STDLIKN 522
P A G+ + + R + + +L+ T C L +TD+I
Sbjct 580 QPQAF--------LGWSVDSCLQGD--RCNIFANFILHDVNSGTTCSTDLQKSNTDIILG 629
Query 523 QCVNFNFNGLTGTGVLTP-SSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGV 581
CVN++ G+TG G+ ++ + +Q D + RD T+ I C G V
Sbjct 630 VCVNYDLYGITGQGIFVEANATYYNSWQNLLYDSNGNLYGFRDYLTNRTFMIRSCYSGRV 689
Query 582 SVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIGAEH 641
S SSE A+L++++ C V + QL P N F + GC++ A++
Sbjct 690 SAAFHAN--SSEPALLFRNIKCNYVFNNTLSRQLQPI--------NYFDSYLGCVVNADN 739
Query 642 VDTS--YECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNT------ 693
S CD+ +G+G C Y T R + + Y + ++ N++
Sbjct 740 STASAVQTCDLTVGSGYCVDYST---KRRSVRAITTGYRFTNFEPFTVNSVNDSLEPVGG 796
Query 694 ---IAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALS 750
I IP+ F+I E + S K ++DC+ ++CGD C + L++YGSFC +N L+
Sbjct 797 LYEIQIPSEFTIGNMEEFIQTSSPKVTIDCSAFVCGDCAACKSQLVEYGSFCDNINAILT 856
Query 751 GIAAEQDRNTREVFAQVKQMYKTPTLKYFG------GFNFSQILP----DPLKPTKRSFI 800
+ D +V + T G NFS +L + K + RS I
Sbjct 857 EVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSECNKVSSRSAI 916
Query 801 EDLLFNKVTLADAGFMKQYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALV 860
EDLLF+KV L+D GF++ Y C G RDLIC Q +NG+ VLPPLL+++ I+ YT A
Sbjct 917 EDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSENQISGYTLAAT 976
Query 861 SGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESL 920
S + W+ AG +PF + + YR NGIGVT +VL +NQK IAN FN A+ IQE
Sbjct 977 SASLFPPWSAAAG----VPFYLNVQYRINGIGVTMDVLSQNQKLIANAFNNALDAIQEGF 1032
Query 921 TTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLIT 980
T++AL K+Q VVN NA+ALN L++QLS+ FGAISS L +ILSRLD +EA+ QIDRLI
Sbjct 1033 DATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISSSLQEILSRLDALEAQRQIDRLIN 1092
Query 981 GRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPH 1040
GR +L YV+QQL + ++ SA A K++ECV QS R++FCG G H++S Q AP+
Sbjct 1093 GRFTALNAYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNHIISLVQNAPY 1152
Query 1041 GVVFLHVTYVPSQERNFTTAPAICHEG-KAYFPREGVFVFNGTSWFITQRNFFSPQIITT 1099
G+ F+H +YVP++ +P +C G + P+ G FV +W T ++ P+ IT
Sbjct 1153 GLYFIHFSYVPTKYVTAKVSPGLCIAGDRGIAPKSGYFVNVNNTWMFTGSGYYYPEPITG 1212
Query 1100 DNTFVSGNCDVVIGIINNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVV 1159
+N V C V + + + P L FKEELD++FKN TS DL + IN + +
Sbjct 1213 NNVVVMSTCAVNYTKAPDVMLNISTPNLPDFKEELDQWFKNQTSVAPDL-SLDYINVTFL 1271
Query 1160 NIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCM 1219
++Q E++RL E K LN+S I+L+++G YE Y+KWPWYVWL + G + M+ +L
Sbjct 1272 DLQDEMNRLQEAIKLLNQSYINLKDIGTYEYYVKWPWYVWL--LIGFAGVAMLVLLFFIC 1329
Query 1220 TSCCSCLKGACSCGSCCKFDEDDSEPVLK 1248
CG CC E V+K
Sbjct 1330 CCTGCGTSCFKKCGGCCDDYTGHQELVIK 1358
Score = 458 bits (1178), Expect = 4e-138, Method: Composition-based stats.
Identities = 132/584 (23%), Positives = 219/584 (38%), Gaps = 101/584 (17%)
Query 1 MFIFLLF-LTLTSGSDLD-RCTTFD----DVQAPNYTQHTSS---MRGVYYPDEIFRSDT 51
MF+ LL L + D +CTT D P+ + T G YY D
Sbjct 1 MFLILLISLPMALAVIGDLKCTTVSINDVDTGVPSISTDTVDVTNGLGTYYV-----LDR 55
Query 52 LYLTQDLFLPFYSNVTGFHTINHT----------FGNP--VIPFKDGIYFAATEKSNVVR 99
+YL L L Y +G N + P + F +GI FA + + V++
Sbjct 56 VYLNTTLLLNGYYPTSGSTYRNMALKGTLLLSTLWFKPPFLSDFINGI-FAKVKNTKVIK 114
Query 100 GWV---------FGSTMNNKSQSVIIINNSTNV--------VIRACNFELCDNPFFAVSK 142
V GST N S SV++ ++TN+ I C + +C+ P
Sbjct 115 HGVMYSEFPAITIGSTFVNTSYSVVVQPHTTNLDNKLQGLLEISVCQYTMCEYPNTICHP 174
Query 143 PMGTQTHTMIF--DNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGY 200
+G + + +C ++ F+ DV+ F F + G Y Y +
Sbjct 175 NLGNRRVELWHWDTGVVSCLYK---RNFTYDVNAD------YLYFHFYQEGGTFYAY--F 223
Query 201 QPIDVVRDLPSGFNTLKPIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPT 260
VV K +F + LG ++++ + + A + Y+V L
Sbjct 224 TDTGVVT---------KFLFNVYLGTVLSHYYVMPLTCNSAMTL------EYWVTPLTSK 268
Query 261 TFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVR-FPNI 319
++L ++++G I +AVDC + ++E+KC S G+Y+ + + V P DV R PN+
Sbjct 269 QYLLAFNQDGVIFNAVDCKSDFMSEIKCKTLSIAPSTGVYELNGYTVQPIADVYRRIPNL 328
Query 320 TNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCF 379
+ C N PS WERK SNC + S L + +F C + A K+ +CF
Sbjct 329 PD-CNIEAWLNDKSVPSPLNWERKTFSNCNFNMSSLMSFIQADSFTCNNIDAAKIYGMCF 387
Query 380 SNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDAT----STGN 435
S++ D F + + G G + +NY++ C L +N + + +
Sbjct 388 SSITIDKFAIPNGRKVDLQLGNLGYLQSFNYRIDTTATSCQLYYNLPAANVSLSRFNPSI 447
Query 436 YNYKYRYLRHGKLRP-----------------FERDISNVPFSPDGKPCTPPALNCYWPL 478
+N ++ + +P F+ + P DG C P
Sbjct 448 WNRRFGFTEQSVFKPQPVGVFTDHDVVYAQHCFKAPTNFCPCKLDGSLCVGNG-----PG 502
Query 479 NDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKN 522
D G Y +GIG P L+ +C P T
Sbjct 503 IDAG-YKNSGIGTCPAGTNYLTCHNAAQCNCLCTPDPITSKSTG 545
>sp|P15777|SPIKE_CVBM Spike glycoprotein OS=Bovine coronavirus
(strain Mebus) OX=11132 GN=S PE=3 SV=1
Length=1363
Score = 938 bits (2423), Expect = 0.0, Method: Composition-based stats.
Identities = 297/866 (34%), Positives = 433/866 (50%), Gaps = 53/866 (6%)
Query 409 NYKLPDDFMGCVLAWNTRNIDATSTGNYN-YKYRYLRHGKLRPFERDISNVPFSPDGKPC 467
NY + C I + STG Y + +YL I + + C
Sbjct 520 NYLTCHNAAQCNCLCTPDPITSKSTGPYKCPQTKYLVGIGEHCSGLAIKSDYCGGNPCTC 579
Query 468 TPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLN--APATVCGPKL---STDLIKN 522
P A G+ + + R + + +L+ T C L +TD+I
Sbjct 580 QPQAF--------LGWSVDSCLQGD--RCNIFANFILHDVNSGTTCSTDLQKSNTDIILG 629
Query 523 QCVNFNFNGLTGTGVLTP-SSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGV 581
CVN++ G+TG G+ ++ + +Q D + RD T+ I C G V
Sbjct 630 VCVNYDLYGITGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYLTNRTFMIRSCYSGRV 689
Query 582 SVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIGAEH 641
S SSE A+L++++ C V + QL P N F + GC++ A++
Sbjct 690 SAAFHAN--SSEPALLFRNIKCNYVFNNTLSRQLQPI--------NYFDSYLGCVVNADN 739
Query 642 VDTSY--ECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAY------SNNT 693
+S CD+ +G+G C Y T R T +S+
Sbjct 740 STSSVVQTCDLTVGSGYCVDYSTKRRSRRAITTGYRFTTFEPFTVNSVNDSLEPVGGLYE 799
Query 694 IAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIA 753
I IP+ F+I E + S K ++DC+ ++CGD C + L++YGSFC +N L+ +
Sbjct 800 IQIPSEFTIGNMEEFIQTSSPKVTIDCSAFVCGDYAACKSQLVEYGSFCDNINAILTEVN 859
Query 754 AEQDRNTREVFAQVKQMYKTPTLKYFG------GFNFSQILP----DPLKPTKRSFIEDL 803
D +V + T G NFS +L D K + RS IEDL
Sbjct 860 ELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSDCNKVSSRSAIEDL 919
Query 804 LFNKVTLADAGFMKQYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGT 863
LF+KV L+D GF++ Y C G RDLIC Q +NG+ VLPPLL+ + I+ YT A S +
Sbjct 920 LFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSVNQISGYTLAATSAS 979
Query 864 ATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTT 923
+ G +PF + + YR NGIGVT +VL +NQK IAN FN A+ IQE T
Sbjct 980 LFPPLSAAVG----VPFYLNVQYRINGIGVTMDVLSQNQKLIANAFNNALDAIQEGFDAT 1035
Query 924 STALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRL 983
++AL K+Q VVN NA+ALN L++QLS+ FGAISS L +ILSRLD +EA+ QIDRLI GRL
Sbjct 1036 NSALVKIQAVVNANAEALNNLLQQLSNRFGAISSSLQEILSRLDALEAQAQIDRLINGRL 1095
Query 984 QSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVV 1043
+L YV+QQL + ++ SA A K++ECV QS R++FCG G H++S Q AP+G+
Sbjct 1096 TALNVYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNHIISLVQNAPYGLY 1155
Query 1044 FLHVTYVPSQERNFTTAPAICHEG-KAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNT 1102
F+H +YVP++ +P +C G + P+ G FV +W T ++ P+ IT +N
Sbjct 1156 FIHFSYVPTKYVTAKVSPGLCIAGDRGIAPKSGYFVNVNNTWMFTGSGYYYPEPITGNNV 1215
Query 1103 FVSGNCDVVIGIINNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQ 1162
V C V + + + P L FKEELD++FKN TS DL + IN + +++Q
Sbjct 1216 VVMSTCAVNYTKAPDVMLNISTPNLHDFKEELDQWFKNQTSVAPDL-SLDYINVTFLDLQ 1274
Query 1163 KEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSC 1222
E++RL E K LN+S I+L+++G YE Y+KWPWYVWL + G + M+ +L
Sbjct 1275 DEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWL--LIGFAGVAMLVLLFFICCCT 1332
Query 1223 CSCLKGACSCGSCCKFDEDDSEPVLK 1248
CG CC E V+K
Sbjct 1333 GCGTSCFKICGGCCDDYTGHQELVIK 1358
Score = 455 bits (1171), Expect = 5e-137, Method: Composition-based stats.
Identities = 133/584 (23%), Positives = 219/584 (38%), Gaps = 101/584 (17%)
Query 1 MFIFLLF-LTLTSGSDLD-RCTTFD----DVQAPNYTQHTSS---MRGVYYPDEIFRSDT 51
MF+ LL L + D +CTT D AP+ + G YY D
Sbjct 1 MFLILLISLPMAFAVIGDLKCTTVSINDVDTGAPSISTDIVDVTNGLGTYYV-----LDR 55
Query 52 LYLTQDLFLPFYSNVTGFHTINHT----------FGNP--VIPFKDGIYFAATEKSNVVR 99
+YL L L Y +G N + P + F +GI FA + + V++
Sbjct 56 VYLNTTLLLNGYYPTSGSTYRNMALKGTLLLSRLWFKPPFLSDFINGI-FAKVKNTKVIK 114
Query 100 GWV---------FGSTMNNKSQSVIIINNSTNV--------VIRACNFELCDNPFFAVSK 142
V GST N S SV++ ++TN+ I C + +C+ P
Sbjct 115 KGVMYSEFPAITIGSTFVNTSYSVVVQPHTTNLDNKLQGLLEISVCQYTMCEYPHTICHP 174
Query 143 PMGTQTHTMIF--DNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGY 200
+G + + +C ++ F+ DV+ F F + G Y Y +
Sbjct 175 NLGNKRVELWHWDTGVVSCLYK---RNFTYDVNAD------YLYFHFYQEGGTFYAY--F 223
Query 201 QPIDVVRDLPSGFNTLKPIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPT 260
VV K +F + LG ++++ + S A + Y+V L
Sbjct 224 TDTGVVT---------KFLFNVYLGTVLSHYYVLPLTCSSAMTL------EYWVTPLTSK 268
Query 261 TFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVR-FPNI 319
++L ++++G I +AVDC + ++E+KC S G+Y+ + + V P DV R PN+
Sbjct 269 QYLLAFNQDGVIFNAVDCKSDFMSEIKCKTLSIAPSTGVYELNGYTVQPIADVYRRIPNL 328
Query 320 TNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCF 379
+ C N PS WERK SNC + S L + +F C + A K+ +CF
Sbjct 329 PD-CNIEAWLNDKSVPSPLNWERKTFSNCNFNMSSLMSFIQADSFTCNNIDAAKIYGMCF 387
Query 380 SNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDAT----STGN 435
S++ D F + + G G + +NY++ C L +N + + +
Sbjct 388 SSITIDKFAIPNGRKVDLQLGNLGYLQSFNYRIDTTATSCQLYYNLPAANVSVSRFNPST 447
Query 436 YNYKYRYLRHGKLRP-----------------FERDISNVPFSPDGKPCTPPALNCYWPL 478
+N ++ + +P F+ + P DG C P
Sbjct 448 WNRRFGFTEQFVFKPQPVGVFTHHDVVYAQHCFKAPSNFCPCKLDGSLCVGNG-----PG 502
Query 479 NDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKN 522
D G Y +GIG P L+ +C P T
Sbjct 503 IDAG-YKNSGIGTCPAGTNYLTCHNAAQCNCLCTPDPITSKSTG 545
>sp|P25193|SPIKE_CVBQ Spike glycoprotein OS=Bovine coronavirus
(strain Quebec) OX=11133 GN=S PE=3 SV=2
Length=1363
Score = 936 bits (2418), Expect = 0.0, Method: Composition-based stats.
Identities = 295/869 (34%), Positives = 436/869 (50%), Gaps = 59/869 (7%)
Query 409 NYKLPDDFMGCVLAWNTRNIDATSTGNYN-YKYRYLRHGKLRPFERDISNVPFSPDGKPC 467
NY + C I + STG Y + +YL I + + C
Sbjct 520 NYLTCHNAAQCDCLCTPDPITSKSTGPYKCPQTKYLVGIGEHCSGLAIKSDYCGGNPCTC 579
Query 468 TPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLN--APATVCGPKL---STDLIKN 522
P A G+ + + R + + + + T C L +TD+I
Sbjct 580 QPQAF--------LGWSVDSCLQGD--RCNIFANFIFHDVNSGTTCSTDLQKSNTDIILG 629
Query 523 QCVNFNFNGLTGTGVLTP-SSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGV 581
CVN++ G+TG G+ ++ + +Q D + RD T+ I C G V
Sbjct 630 VCVNYDLYGITGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYLTNRTFMIRSCYSGRV 689
Query 582 SVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIGAEH 641
S SSE A+L++++ C V + QL P N F + GC++ A++
Sbjct 690 SAAFHAN--SSEPALLFRNIKCNYVFNNTLSRQLQPI--------NYFDSYLGCVVNADN 739
Query 642 VDTSY--ECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNT------ 693
+S CD+ +G+G C Y T R + + Y + ++ N++
Sbjct 740 STSSVVQTCDLTVGSGYCVDYST---KRRSRRAITTGYRFTNFEPFTVNSVNDSLEPVGG 796
Query 694 ---IAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALS 750
I IP+ F+I E + S K ++DC+ ++CGD C + L++YGSFC +N L+
Sbjct 797 LYEIQIPSEFTIGNMEEFIQTSSPKVTIDCSAFVCGDYAACKSQLVEYGSFCDNINAILT 856
Query 751 GIAAEQDRNTREVFAQVKQMYKTPTLKYFG------GFNFSQILP----DPLKPTKRSFI 800
+ D +V + T G NFS +L K + RS I
Sbjct 857 EVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSACNKVSSRSAI 916
Query 801 EDLLFNKVTLADAGFMKQYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALV 860
EDLLF+KV L+D GF++ Y C G RDLIC Q +NG+ VLPPLL+ + I+ YT A
Sbjct 917 EDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSVNQISGYTLAAT 976
Query 861 SGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESL 920
S + + G +PF + + YR NGIGVT +VL +NQK IAN FN A+ IQE
Sbjct 977 SASLFPPLSAAVG----VPFYLNVQYRINGIGVTMDVLSQNQKLIANAFNNALDAIQEGF 1032
Query 921 TTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLIT 980
T++AL K+Q VVN NA+ALN L++QLS+ FGAISS L +ILSRLD +EA+ QIDRLI
Sbjct 1033 DATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISSSLQEILSRLDALEAQAQIDRLIN 1092
Query 981 GRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPH 1040
GRL +L YV+QQL + ++ SA A K++ECV QS R++FCG G H++S Q AP+
Sbjct 1093 GRLTALNVYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNHIISLVQNAPY 1152
Query 1041 GVVFLHVTYVPSQERNFTTAPAICHEG-KAYFPREGVFVFNGTSWFITQRNFFSPQIITT 1099
G+ F+H +YVP++ +P +C G + P+ G FV +W T ++ P+ IT
Sbjct 1153 GLYFIHFSYVPTKYVTAKVSPGLCIAGDRGIAPKSGYFVNVNNTWMFTGSGYYYPEPITG 1212
Query 1100 DNTFVSGNCDVVIGIINNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVV 1159
+N V C V + + + P L FKEELD++FKN TS DL + IN + +
Sbjct 1213 NNVVVMSTCAVNYTKAPDVMLNISTPNLHDFKEELDQWFKNQTSVAPDL-SLDYINVTFL 1271
Query 1160 NIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCM 1219
++Q E++RL E K LN+S I+L+++G YE Y+KWPWYVWL + G + M+ +L
Sbjct 1272 DLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWL--LIGFAGVAMLVLLFFIC 1329
Query 1220 TSCCSCLKGACSCGSCCKFDEDDSEPVLK 1248
CG CC E V+K
Sbjct 1330 CCTGCGTSCFKICGGCCDDYTGHQELVIK 1358
Score = 456 bits (1172), Expect = 3e-137, Method: Composition-based stats.
Identities = 133/584 (23%), Positives = 219/584 (38%), Gaps = 101/584 (17%)
Query 1 MFIFLLF-LTLTSGSDLD-RCTTFD----DVQAPNYTQHTSS---MRGVYYPDEIFRSDT 51
MF+ LL L + D +CTT D AP+ + G YY D
Sbjct 1 MFLILLISLPMAFAVIGDLKCTTVSINDVDTGAPSISTDIVDVTNGLGTYYV-----LDR 55
Query 52 LYLTQDLFLPFYSNVTGFHTINHT----------FGNP--VIPFKDGIYFAATEKSNVVR 99
+YL L L Y +G N + P + F +GI FA + + V++
Sbjct 56 VYLNTTLLLNGYYPTSGSTYRNMALKGTLLLSRLWFKPPFLSDFINGI-FAKVKNTKVIK 114
Query 100 GWV---------FGSTMNNKSQSVIIINNSTNV--------VIRACNFELCDNPFFAVSK 142
V GST N S SV++ ++TN+ I C + +C+ P
Sbjct 115 KGVMYSEFPAITIGSTFVNTSYSVVVQPHTTNLDNKLQGLLEISVCQYTMCEYPHTICHP 174
Query 143 PMGTQTHTMIF--DNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGY 200
+G + + +C ++ F+ DV+ F F + G Y Y +
Sbjct 175 KLGNKRVELWHWDTGVVSCLYK---RNFTYDVNAD------YLYFHFYQEGGTFYAY--F 223
Query 201 QPIDVVRDLPSGFNTLKPIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPT 260
VV K +F + LG ++++ + S A + Y+V L
Sbjct 224 TDTGVVT---------KFLFNVYLGTVLSHYYVLPLTCSSAMTL------EYWVTPLTSK 268
Query 261 TFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVR-FPNI 319
++L ++++G I +AVDC + ++E+KC S G+Y+ + + V P DV R PN+
Sbjct 269 QYLLAFNQDGVIFNAVDCKSDFMSEIKCKTLSIAPSTGVYELNGYTVQPIADVYRRIPNL 328
Query 320 TNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCF 379
+ C N PS WERK SNC + S L + +F C + A K+ +CF
Sbjct 329 PD-CNIEAWLNDKSVPSPLNWERKTFSNCNFNMSSLMSFIQADSFTCNNIDAAKIYGMCF 387
Query 380 SNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDAT----STGN 435
S++ D F + + G G + +NY++ C L +N + + +
Sbjct 388 SSITIDKFAIPNGRKVDLQLGNLGYLQSFNYRIDTTATSCQLYYNLPAANVSVSRFNPST 447
Query 436 YNYKYRYLRHGKLRP-----------------FERDISNVPFSPDGKPCTPPALNCYWPL 478
+N ++ + +P F+ + P DG C P
Sbjct 448 WNRRFGFTEQFVFKPQPVGVFTHHDVVYAQHCFKAPKNFCPCKLDGSLCVGNG-----PG 502
Query 479 NDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKN 522
D G Y +GIG P L+ +C P T
Sbjct 503 IDAG-YKNSGIGTCPAGTNYLTCHNAAQCDCLCTPDPITSKSTG 545
>sp|P22432|SPIKE_CVM4 Spike glycoprotein OS=Murine coronavirus
(strain 4) OX=12760 GN=S PE=3 SV=1
Length=1376
Score = 931 bits (2406), Expect = 0.0, Method: Composition-based stats.
Identities = 288/858 (34%), Positives = 431/858 (50%), Gaps = 54/858 (6%)
Query 432 STGNYN-YKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDY-GFYTTTGI 489
++ Y R + + + D + P C + + G+ T +
Sbjct 535 KPNPFDTYDLRCGQIKTIVNVGDHCEGLGVLEDKCGNSDPHKGCSCANDSFIGWSHDTCL 594
Query 490 GYQPYRVVVLSFELLNA--PATVCGPKL---STDLIKNQCVNFNFNGLTGTGVLTP-SSK 543
R + + LLN T C L +T++ CV ++ G+TG GV +
Sbjct 595 VND--RCQIFANILLNGINSGTTCSTDLQLPNTEVATGVCVRYDLYGITGQGVFKEVKAD 652
Query 544 RFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNC 603
+ +Q DV+ + RD T++ I C G VS + E A+LY+++NC
Sbjct 653 YYNSWQALLYDVNGNLNGFRDLTTNKTYTIRSCYSGRVSAAY--HKEAPEPALLYRNINC 710
Query 604 TDVSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIGAEHVD--TSYECDIPIGAGICASYH 661
+ V T + + P N F + GC++ A++ CD+ +GAG+C Y
Sbjct 711 SYVFTNNISREENPL--------NYFDSYLGCVVNADNRTDEALPNCDLRMGAGLCVDYS 762
Query 662 TVSLLRSTSQKSIVAYT----MSLGADSSIAYSN--NTIAIPTNFSISITTEVMPVSMAK 715
R + T M + + S+ + IPTNF+I E + + K
Sbjct 763 KSRRARRSVSTGYRLTTFEPYMPMLVNDSVQSVGGLYEMQIPTNFTIGHHEEFIQIRAPK 822
Query 716 TSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPT 775
++DC ++CGD+ C L++YGSFC +N L+ + D +V + + Q +
Sbjct 823 VTIDCAAFVCGDNAACRQQLVEYGSFCDNVNAILNEVNNLLDNMQLQVASALMQGVTISS 882
Query 776 LKYFG------GFNFSQILP-----------DPLKPTKRSFIEDLLFNKVTLADAGFMKQ 818
G NFS +L P RS IEDLLF+KV L+D GF++
Sbjct 883 RLPDGISGPIDDINFSPLLGCIGSTCAEDGNGPSAIRGRSAIEDLLFDKVKLSDVGFVEA 942
Query 819 YGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQI 878
Y C G RDL+C Q FNG+ VLPP+L++ I+ YTA + WT AG +
Sbjct 943 YNNCTGGQEVRDLLCVQSFNGIKVLPPVLSESQISGYTAGATAAAMFPPWTAAAG----V 998
Query 879 PFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNA 938
PF++ + YR NG+GVT NVL ENQK IA+ FN A+ IQE T++ALGK+Q VVN NA
Sbjct 999 PFSLNVQYRINGLGVTMNVLSENQKMIASAFNNALGAIQEGFDATNSALGKIQSVVNANA 1058
Query 939 QALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAA 998
+ALN L+ QLS+ FGAIS+ L +IL+RLD VEA+ QIDRLI GRL +L Y+++QL +
Sbjct 1059 EALNNLLNQLSNRFGAISASLQEILTRLDAVEAKAQIDRLINGRLTALNAYISKQLSDST 1118
Query 999 EIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFT 1058
I+ SA A K++ECV Q+ R++FCG G H++S Q AP+G+ F+H +YVP+ +
Sbjct 1119 LIKFSAAQAIEKVNECVKSQTTRINFCGNGNHILSLVQNAPYGLCFIHFSYVPTSFKTAN 1178
Query 1059 TAPAICHEG-KAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN 1117
+P +C G + P+ G FV + W T N++ P+ IT N+ V +C V
Sbjct 1179 VSPGLCISGDRGLAPKAGYFVQDNGEWKFTGSNYYYPEPITDKNSVVMISCAVNYTKAPE 1238
Query 1118 TVYDPLQPELDSFKEELDKYFKNHTSPDVDLG-DISGINASVVNIQKEIDRLNEVAKNLN 1176
+ P L FKEELDK+FKN TS DL D +N + +++ E++R+ + K LN
Sbjct 1239 VFLNNSIPNLPDFKEELDKWFKNQTSIAPDLSLDFEKLNVTFLDLTYEMNRIQDAIKKLN 1298
Query 1177 ESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCC 1236
ES I+L+E+G YE Y+KWPWYVWL + GL + + +L CGSCC
Sbjct 1299 ESYINLKEVGTYEMYVKWPWYVWL--LIGLAGVAVCVLLFFICCCTGCGSCCFRKCGSCC 1356
Query 1237 KFDEDDSE-PVLKGVKLH 1253
+ V+ + H
Sbjct 1357 DEYGGHQDSIVIHNISAH 1374
Score = 483 bits (1243), Expect = 4e-147, Method: Composition-based stats.
Identities = 125/543 (23%), Positives = 209/543 (38%), Gaps = 64/543 (12%)
Query 1 MFIFLLFLTLTSGSDLD-RCTTF-----DDVQAPNYTQHT---SSMRGVYYP-DEIFRSD 50
+F+F+L L G D RC ++ AP+ + S G YY D ++ +
Sbjct 2 LFVFILLLPSCLGYIGDFRCIQTVNYNGNNASAPSISTEAVDVSKGLGTYYVLDRVYLNA 61
Query 51 TLYLTQDLFLPF----YSNV--TGFHTINHTFGNP--VIPFKDGIYFAATE--KSNVVRG 100
TL LT + P Y N+ TG +T++ T+ P + F DGI FA + K+N G
Sbjct 62 TLLLTG--YYPVDGSNYRNLALTGTNTLSLTWFKPPFLSEFNDGI-FAKVQNLKTNTPTG 118
Query 101 W-------VFGSTMNNKSQSVIIINNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIF 153
V GS N S +V++ + ++ C + +C P+ +
Sbjct 119 ATSYFPTIVIGSLFGNTSYTVVLEPYNNIIMASVCTYTICQLPYTPCKPNTNGNRVIGFW 178
Query 154 DNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGF 213
+ F+ +V+ F F + G Y Y +P
Sbjct 179 HTDVKPPICLLKRNFTFNVNAP------WLYFHFYQQGGTFYAYYADKP----------- 221
Query 214 NTLKPIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTIT 273
+ +F + +G +T + + +P T Y+V L ++ ++E G IT
Sbjct 222 SATTFLFSVYIGDILTQYFVLPFICTPTAG--STLLPLYWVTPLLKRQYLFNFNEKGVIT 279
Query 274 DAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVR-FPNITNLCPFGEVFNAT 332
AVDC+ + ++E+KC +S G+Y S + V P G V R PN+ + C E A
Sbjct 280 SAVDCASSYISEIKCKTQSLLPSTGVYDLSGYTVQPVGVVYRRVPNLPD-CKIEEWLTAK 338
Query 333 KFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGD 392
PS WER+ NC + S L + C + A+K+ +CF +V D F +
Sbjct 339 SVPSPLNWERRTFQNCNFNLSSLLRYVQAESLSCNNIDASKVYGMCFGSVSVDKFAIPRS 398
Query 393 DVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDAT----STGNYNYKYRYLRHGKL 448
+ G +G + NYK+ C L ++ + T + ++N +Y + G
Sbjct 399 RQIDLQIGNSGFLQTANYKIDTAATSCQLYYSLPKNNVTINNYNPSSWNRRYGFNDAGVF 458
Query 449 RPFERDISNVPFS----PDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELL 504
+ D++ P PC P + T Y P + L
Sbjct 459 GKSKHDVAYAQQCFTVRPSYCPCAQPDIVSACTSQ-----TKPMSAYCPTGTIHRECSLW 513
Query 505 NAP 507
N P
Sbjct 514 NGP 516
>sp|Q8BB25|SPIKE_CVP67 Spike glycoprotein OS=Porcine hemagglutinating
encephalomyelitis virus (strain 67N) OX=230237 GN=S
PE=3 SV=1
Length=1349
Score = 926 bits (2392), Expect = 0.0, Method: Composition-based stats.
Identities = 282/861 (33%), Positives = 424/861 (49%), Gaps = 53/861 (6%)
Query 414 DDFMGCVLAWNTRNIDATSTGNYN-YKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPAL 472
C + + + + S + C P A
Sbjct 511 TKATKCTCWCQPDPSTYKGVNAWTCPQSKVSIQPGQHCPGLGLVEDDCSGNPCTCKPQAF 570
Query 473 NCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLN--APATVCGPKL---STDLIKNQCVNF 527
G+ + T + R + + +LN T C L +T + + CVN+
Sbjct 571 --------IGWSSETCLQNG--RCNIFANFILNDVNSGTTCSTDLQQGNTIITTDVCVNY 620
Query 528 NFNGLTGTGVLTP-SSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITP 586
+ G+TG G+L ++ + +Q D S RD ++ I C G VS +
Sbjct 621 DLYGITGQGILIEVNATYYNSWQNLLYDSSGNLYGFRDYLSNRTFLIRSCYSGRVSAVFH 680
Query 587 GTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIGAEHVDTS- 645
SSE A++++++ C+ V Q+ N F + GC++ A + S
Sbjct 681 AN--SSEPALMFRNLKCSHVFNNTILRQIQLV--------NYFDSYLGCVVNAYNNTASA 730
Query 646 -YECDIPIGAGICASYHTVSLLRST-----SQKSIVAYTMSLGADSSIAYSN-NTIAIPT 698
CD+ +G+G C Y T R + + + +L DS I IP+
Sbjct 731 VSTCDLTVGSGYCVDYVTALRSRRSFTTGYRFTNFEPFAANLVNDSIEPVGGLYEIQIPS 790
Query 699 NFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDR 758
F+I E + K ++DC ++CGD C L +YGSFC +N L+ + D
Sbjct 791 EFTIGNLEEFIQTRSPKVTIDCATFVCGDYAACRQQLAEYGSFCENINAILTEVNELLDT 850
Query 759 NTREVFAQVKQMYKTPTLKYFG------GFNFSQILP----DPLKPTKRSFIEDLLFNKV 808
+V + T G NFS +L + + + RS IEDLLF+KV
Sbjct 851 TQLQVANSLMNGVTLSTKIKDGINFNVDDINFSPVLGCLGSECNRASTRSAIEDLLFDKV 910
Query 809 TLADAGFMKQYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGW 868
L+D GF++ Y C G RDLIC Q +NG+ VLPPLL+++ I+ YT A + + W
Sbjct 911 KLSDVGFVQAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSENQISGYTLAATAASLFPPW 970
Query 869 TFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALG 928
T AG +PF + + YR NG+GVT +VL +NQK IA+ FN A+ IQE T++AL
Sbjct 971 TAAAG----VPFYLNVQYRINGLGVTMDVLSQNQKLIASAFNNALDAIQEGFDATNSALV 1026
Query 929 KLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQT 988
K+Q VVN NA+ALN L++QLS+ FGAIS+ L +ILSRLD +EA+ QIDRLI GRL +L
Sbjct 1027 KIQAVVNANAEALNNLLQQLSNRFGAISASLQEILSRLDALEAKAQIDRLINGRLTALNA 1086
Query 989 YVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVT 1048
YV+QQL + ++ SA A K++ECV QS R++FCG G H++S Q AP+G+ F+H +
Sbjct 1087 YVSQQLSDSTLVKFSAAQAIEKVNECVKSQSSRINFCGNGNHIISLVQNAPYGLYFIHFS 1146
Query 1049 YVPSQERNFTTAPAICHEGK-AYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGN 1107
YVP++ +P +C G P+ G F+ SW T +++ P+ IT +N V
Sbjct 1147 YVPTKYVTAKVSPGLCIAGDIGISPKSGYFINVNNSWMFTGSSYYYPEPITQNNVVVMST 1206
Query 1108 CDVVIGIINNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDR 1167
C V + + + P L FKEEL ++FKN +S DL + IN + +++Q E++R
Sbjct 1207 CAVNYTKAPDLMLNTSTPNLPDFKEELYQWFKNQSSVAPDL-SLDYINVTFLDLQDEMNR 1265
Query 1168 LNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLK 1227
L E K LN+S I+L+++G YE Y+KWPWYVWL + GL + M+ +L
Sbjct 1266 LQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWL--LIGLAGVAMLVLLFFICCCTGCGTS 1323
Query 1228 GACSCGSCCKFDEDDSEPVLK 1248
CG CC E V+K
Sbjct 1324 CFKKCGGCCDDYTGHQEFVIK 1344
Score = 440 bits (1131), Expect = 1e-131, Method: Composition-based stats.
Identities = 112/522 (21%), Positives = 194/522 (37%), Gaps = 73/522 (14%)
Query 2 FIFLLFLTLTSGSDLD-RCTTF----DDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQ 56
FI L+ L D +CTT D P+ + + + D +YL
Sbjct 3 FILLISLPSAFAVIGDLKCTTSLINDVDTGVPSISSEVVDVTNGL--GTFYVLDRVYLNT 60
Query 57 DLFLPFYSNVTGFHTINHT----------FGNP--VIPFKDGIYFAATEKSNVVRGWVF- 103
L L Y ++G N + P + PF DGI FA + S + V
Sbjct 61 TLLLNGYYPISGATFRNMALKGTRLLSTLWFKPPFLSPFNDGI-FAKVKNSRFSKDGVIY 119
Query 104 --------GSTMNNKSQSVIIINN--------STNVVIRACNFELCDNPFFAVSKPMGTQ 147
GST N S S+++ + + I C + +C+ P +G Q
Sbjct 120 SEFPAITIGSTFVNTSYSIVVEPHTSLINGNLQGLLQISVCQYTMCEYPHTICHPNLGNQ 179
Query 148 THTMIF--DNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDV 205
+ + +C + F+ DV+ F F + G Y Y +
Sbjct 180 RIELWHYDTDVVSCLYR---RNFTYDVNAD------YLYFHFYQEGGTFYAY--FTDTGF 228
Query 206 VRDLPSGFNTLKPIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLK 265
V K +FKL LG ++++ + + A + Y+V L F+L
Sbjct 229 VT---------KFLFKLYLGTVLSHYYVMPLTCNSALSL------EYWVTPLTTRQFLLA 273
Query 266 YDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVR-FPNITNLCP 324
+D++G + AVDC+ + ++E+ C S G+Y+ + + V P V R P++ N C
Sbjct 274 FDQDGVLYHAVDCASDFMSEIMCKTSSITPPTGVYELNGYTVQPVATVYRRIPDLPN-CD 332
Query 325 FGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYA 384
N+ S WERK SNC + L + +F C + A++L +CF ++
Sbjct 333 IEAWLNSKTVSSPLNWERKIFSNCNFNMGRLMSFIQADSFGCNNIDASRLYGMCFGSITI 392
Query 385 DSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDAT----STGNYNYKY 440
D F + + G++G + +NYK+ C L ++ + + + ++N +Y
Sbjct 393 DKFAIPNSRKVDLQVGKSGYLQSFNYKIDTAVSSCQLYYSLPAANVSVTHYNPSSWNRRY 452
Query 441 RYLRHGKLRPFERD--ISNVPFSPDGKPCTPPALNCYWPLND 480
+ D S F+ C C
Sbjct 453 GFNNQSFGSRGLHDAVYSQQCFNTPNTYCPCRTSQCIGGAGT 494
>sp|Q02385|SPIKE_CVMJC Spike glycoprotein OS=Murine coronavirus
(strain JHMV / variant CL-2) OX=33735 GN=S PE=1 SV=1
Length=1376
Score = 924 bits (2388), Expect = 0.0, Method: Composition-based stats.
Identities = 287/858 (33%), Positives = 432/858 (50%), Gaps = 54/858 (6%)
Query 432 STGNYN-YKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDY-GFYTTTGI 489
++ Y R + + + D + P C + + G+ T +
Sbjct 535 KPNPFDTYDLRCGQIKTIVNVGDHCEGLGVLEDKCGNSDPHKGCSCAHDSFIGWSHDTCL 594
Query 490 GYQPYRVVVLSFELLNA--PATVCGPKL---STDLIKNQCVNFNFNGLTGTGVLTP-SSK 543
+ + LLN T C L +T++ CV ++ G+TG GV +
Sbjct 595 VNDHS--QIFANILLNGINSGTTCSTDLQLPNTEVATGVCVRYDLYGITGQGVFKEVKAD 652
Query 544 RFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNC 603
+ +Q DV+ + RD T++ I C G VS + E A+LY+++NC
Sbjct 653 YYNSWQALLYDVNGNLNGFRDLTTNKTYTIRSCYSGRVSAAY--HKEAPEPALLYRNINC 710
Query 604 TDVSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIGAEHV--DTSYECDIPIGAGICASYH 661
+ V T + + P N F + GC++ A++ + CD+ +GAG+C Y
Sbjct 711 SYVFTNNISREENPL--------NYFDSYLGCVVNADNRPDEALPNCDLRMGAGLCVDYS 762
Query 662 TVSLLRSTSQKSIVAYT----MSLGADSSIAYSN--NTIAIPTNFSISITTEVMPVSMAK 715
R + T M + + S+ + IPTNF+I E + + K
Sbjct 763 KSRRARRSVSTGYRLTTFEPYMPMLVNDSVQSVGGLYEMQIPTNFTIGHHEEFIQIRAPK 822
Query 716 TSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPT 775
++DC ++CGD+ C L++YGSFC +N L+ + D +V + + Q +
Sbjct 823 VTIDCAAFVCGDNAACRQQLVEYGSFCDNVNAILNEVNNLLDNMQLQVASALMQGVTISS 882
Query 776 LKYFG------GFNFSQILP-----------DPLKPTKRSFIEDLLFNKVTLADAGFMKQ 818
G NFS +L P RS IEDLLF+KV L+D GF++
Sbjct 883 RLPDGISGPIDDINFSPLLGCIGSTCAEDGNGPSAMRGRSAIEDLLFDKVKLSDVGFVEA 942
Query 819 YGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQI 878
Y C G RDL+C Q FNG+ VLPP+L++ I+ YTA + WT AG +
Sbjct 943 YNNCTGGQEVRDLLCVQSFNGIKVLPPVLSESQISGYTAGATAAAMFPPWTAAAG----V 998
Query 879 PFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNA 938
PF++ + YR NG+GVT NVL ENQK IA+ FN A+ IQE T++ALGK+Q VVN NA
Sbjct 999 PFSLNVQYRINGLGVTMNVLSENQKMIASAFNNALGAIQEGFDATNSALGKIQSVVNANA 1058
Query 939 QALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAA 998
+ALN L+ QLS+ FGAIS+ L +IL+RLD+VEA+ QIDRLI GRL +L Y+++QL +
Sbjct 1059 EALNNLLNQLSNRFGAISASLQEILTRLDRVEAKAQIDRLINGRLTALNAYISKQLSDST 1118
Query 999 EIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFT 1058
I+ SA A K++ECV Q+ R++FCG G H++S Q AP+G+ F+H +YVP+ +
Sbjct 1119 LIKFSAAQAIEKVNECVKSQTTRINFCGNGNHILSLVQNAPYGLCFIHFSYVPTSFKTAN 1178
Query 1059 TAPAICHEG-KAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN 1117
+P +C G + P+ G FV + W T N++ P+ IT N+ V +C V
Sbjct 1179 VSPGLCISGDRGLAPKAGYFVQDNGEWKFTGSNYYYPEPITDKNSVVMISCAVNYTKAPE 1238
Query 1118 TVYDPLQPELDSFKEELDKYFKNHTSPDVDLG-DISGINASVVNIQKEIDRLNEVAKNLN 1176
+ P L FKEELDK+FKN TS DL D +N + +++ E++R+ + K LN
Sbjct 1239 VFLNNSIPNLPDFKEELDKWFKNQTSIAPDLSLDFEKLNVTFLDLTYEMNRIQDAIKKLN 1298
Query 1177 ESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCC 1236
ES I+L+E+G YE Y+KWPWYVWL + GL + + +L CGSCC
Sbjct 1299 ESYINLKEVGTYEMYVKWPWYVWL--LIGLAGVAVCVLLFFICCCTGCGSCCFRKCGSCC 1356
Query 1237 KFDEDDSE-PVLKGVKLH 1253
+ V+ + H
Sbjct 1357 DEYGGHQDSIVIYNISAH 1374
Score = 484 bits (1245), Expect = 2e-147, Method: Composition-based stats.
Identities = 126/543 (23%), Positives = 210/543 (39%), Gaps = 64/543 (12%)
Query 1 MFIFLLFLTLTSGSDLD-RCTTF-----DDVQAPNYTQHT---SSMRGVYYP-DEIFRSD 50
+F+F+LFL G D RC ++ AP+ + S G YY D ++ +
Sbjct 2 LFVFILFLPSCLGYIGDFRCIQTVNYNGNNASAPSISTEAVDVSKGLGTYYVLDRVYLNA 61
Query 51 TLYLTQDLFLPF----YSNV--TGFHTINHTFGNP--VIPFKDGIYFAATE--KSNVVRG 100
TL LT + P Y N+ TG +T++ T+ P + F DGI FA + K+N G
Sbjct 62 TLLLTG--YYPVDGSNYRNLALTGTNTLSLTWFKPPFLSEFNDGI-FAKVQNLKTNTPTG 118
Query 101 W-------VFGSTMNNKSQSVIIINNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIF 153
V GS N S +V++ + ++ C + +C P+ +
Sbjct 119 ATSYFPTIVIGSLFGNTSYTVVLEPYNNIIMASVCTYTICQLPYTPCKPNTNGNRVIGFW 178
Query 154 DNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGF 213
+ F+ +V+ F F + G Y Y +P
Sbjct 179 HTDVKPPICLLKRNFTFNVNAP------WLYFHFYQQGGTFYAYYADKP----------- 221
Query 214 NTLKPIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTIT 273
+ +F + +G +T + + +P T Y+V L ++ ++E G IT
Sbjct 222 SATTFLFSVYIGDILTQYFVLPFICTPTAG--STLLPLYWVTPLLKRQYLFNFNEKGVIT 279
Query 274 DAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVR-FPNITNLCPFGEVFNAT 332
AVDC+ + ++E+KC +S G+Y S + V P G V R PN+ + C E A
Sbjct 280 SAVDCASSYISEIKCKTQSLLPSTGVYDLSGYTVQPVGVVYRRVPNLPD-CKIEEWLTAK 338
Query 333 KFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGD 392
PS WER+ NC + S L + C + A+K+ +CF +V D F +
Sbjct 339 SVPSPLNWERRTFQNCNFNLSSLLRYVQAESLSCNNIDASKVYGMCFGSVSVDKFAIPRS 398
Query 393 DVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDAT----STGNYNYKYRYLRHGKL 448
+ G +G + NYK+ C L ++ + T + ++N +Y + G
Sbjct 399 RQIDLQIGNSGFLQTANYKIDTAATSCQLYYSLPKNNVTINNYNPSSWNRRYGFNDAGVF 458
Query 449 RPFERDISNVPFS----PDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELL 504
+ D++ P PC P + T Y P + L
Sbjct 459 GKSKHDVAYAQQCFIVRPSYCPCAQPDIVSACTSQ-----TKPMSAYCPTGTIHRECSLW 513
Query 505 NAP 507
N P
Sbjct 514 NGP 516
>sp|Q8JSP8|SPIKE_CVPIA Spike glycoprotein OS=Porcine hemagglutinating
encephalomyelitis virus (strain IAF-404) OX=230236 GN=S
PE=3 SV=1
Length=1349
Score = 913 bits (2360), Expect = 0.0, Method: Composition-based stats.
Identities = 282/861 (33%), Positives = 423/861 (49%), Gaps = 53/861 (6%)
Query 414 DDFMGCVLAWNTRNIDATSTGNYN-YKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPAL 472
+ C + + + + S + C P A
Sbjct 511 TNATKCTCWCQPDPSTYKGVNAWTCPQSKVSIQPGQHCPGLGLVEDDCSGNPCTCKPQAF 570
Query 473 NCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLN--APATVCGPKL---STDLIKNQCVNF 527
G+ + T + R + + +LN T C L +T++ + CVN+
Sbjct 571 --------IGWSSETCLQNG--RCNIFANFILNDVNSGTTCSTDLQQGNTNITTDVCVNY 620
Query 528 NFNGLTGTGVLTP-SSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITP 586
+ G+TG G+L ++ + +Q D S RD ++ I C G VS +
Sbjct 621 DLYGITGQGILIEVNATYYNSWQNLLYDSSGNLYGFRDYLSNRTFLIRSCYSGRVSAVFH 680
Query 587 GTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIGAEHVDTS- 645
SSE A++++++ C+ V Q+ N F + GC++ A + S
Sbjct 681 AN--SSEPALMFRNLKCSHVFNYTILRQIQLV--------NYFDSYLGCVVNAYNNTASA 730
Query 646 -YECDIPIGAGICASYHTVSLLRST-----SQKSIVAYTMSLGADSSIAYSN-NTIAIPT 698
CD+ +G+G C Y T R + + + +L DS I IP+
Sbjct 731 VSTCDLTVGSGYCVDYVTALRSRRSFTTGYRFTNFEPFAANLVNDSIEPVGGLYEIQIPS 790
Query 699 NFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDR 758
F+I E + S K ++DC ++CGD C L +YGSFC +N L + D
Sbjct 791 EFTIGNLEEFIQTSSPKVTIDCATFVCGDYAACRQQLAEYGSFCENINAILIEVNELLDT 850
Query 759 NTREVFAQVKQMYKTPTLKYFG------GFNFSQILP----DPLKPTKRSFIEDLLFNKV 808
+V + T G NFS +L + + + RS IEDLLF+KV
Sbjct 851 TQLQVANSLMNGVTLSTKIKDGINFNVDDINFSSVLGCLGSECNRASTRSAIEDLLFDKV 910
Query 809 TLADAGFMKQYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGW 868
L+D GF++ Y C G RDLIC Q +NG+ VLPPLL+++ I+ YT+A + + W
Sbjct 911 KLSDVGFVQAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSENQISGYTSAATAASLFPPW 970
Query 869 TFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALG 928
T AG +PF + + YR NG+GVT +VL +NQK IA+ FN A+ IQE T++AL
Sbjct 971 TAAAG----VPFYLNVQYRINGLGVTMDVLSQNQKLIASAFNNALDSIQEGFDATNSALV 1026
Query 929 KLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQT 988
K+Q VVN NA+ALN L++QLS+ FGAIS+ L +ILSRLD +EA+ QIDRLI GRL +L
Sbjct 1027 KIQAVVNANAEALNNLLQQLSNRFGAISASLQEILSRLDALEAKAQIDRLINGRLTALNA 1086
Query 989 YVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVT 1048
YV+QQL + ++ SA A K++ECV QS R++FCG G H++S Q AP+G+ F+H +
Sbjct 1087 YVSQQLSDSTLVKFSAAQAIEKVNECVKSQSSRINFCGNGNHIISLVQNAPYGLYFIHFS 1146
Query 1049 YVPSQERNFTTAPAICHEGK-AYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGN 1107
YVP++ +P +C G P+ G F+ SW T ++ P+ IT +N V
Sbjct 1147 YVPTKYVTAKVSPGLCIAGDIGISPKSGYFINVNNSWMFTGSGYYYPEPITQNNVVVMST 1206
Query 1108 CDVVIGIINNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDR 1167
C V + + + P L FKEEL ++FKN +S DL IN + +++Q E++R
Sbjct 1207 CAVNYTKAPDLMLNTSTPNLPDFKEELYQWFKNQSSLAPDL-SFDYINVTFLDLQDEMNR 1265
Query 1168 LNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLK 1227
L E K LN S I+L+++G YE Y+KWPWYVWL + L +VM+ +L
Sbjct 1266 LQEAIKVLNHSYINLKDIGTYEYYVKWPWYVWL--LICLAGVVMLVLLFFICCCTGCGTS 1323
Query 1228 GACSCGSCCKFDEDDSEPVLK 1248
CG C E V+K
Sbjct 1324 CFKKCGGCFDDYTGHQEFVIK 1344
Score = 434 bits (1117), Expect = 1e-129, Method: Composition-based stats.
Identities = 111/522 (21%), Positives = 193/522 (37%), Gaps = 73/522 (14%)
Query 2 FIFLLFLTLTSGSDLD-RCTTFD----DVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQ 56
FI L+ L D +C T D P+ + + + D +YL
Sbjct 3 FILLITLPSVFAVIGDLKCNTSSINDVDTGVPSISSEVVDVTNGL--GTFYVLDRVYLNT 60
Query 57 DLFLPFYSNVTGFHTINHT----------FGNP--VIPFKDGIYFAATEKSNVVRGWVF- 103
L L Y ++G N + P + PF DGI FA + S + V
Sbjct 61 TLLLNGYYPISGATFRNVALKGTRLLSTLWFKPPFLSPFNDGI-FAKVKNSRFSKHGVIY 119
Query 104 --------GSTMNNKSQSVIIINN--------STNVVIRACNFELCDNPFFAVSKPMGTQ 147
GST N S S+++ + + I C + +C+ P +G Q
Sbjct 120 SEFPAITIGSTFVNTSYSIVVKPHTSFINGNLQGFLQISVCQYTMCEYPQTICHPNLGNQ 179
Query 148 THTMIFDN--AFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDV 205
+ + +C + F+ DV+ F F + G Y Y +
Sbjct 180 RIELWHHDTDVVSCLYR---RNFTYDVNAD------YLYFHFYQEGGTFYAY--FTDTGF 228
Query 206 VRDLPSGFNTLKPIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLK 265
V K +FKL LG ++++ + A + Y+V L F+L
Sbjct 229 VT---------KFLFKLYLGTVLSHYYVMPLTCDSALSL------EYWVTPLTTRQFLLA 273
Query 266 YDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVR-FPNITNLCP 324
+D++G + AVDC+ + ++E+ C S G+Y+ + + V P V R P++ N C
Sbjct 274 FDQDGVLYHAVDCASDFMSEIMCKTSSITPPTGVYELNGYTVQPVATVYRRIPDLPN-CD 332
Query 325 FGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYA 384
N+ S WERK SNC + L + +F C + A++L +CF ++
Sbjct 333 IEAWLNSKTVSSPLNWERKIFSNCNFNMGRLMSFIQADSFGCNNIDASRLYGMCFGSITI 392
Query 385 DSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDAT----STGNYNYKY 440
D F + + G++G + +NYK+ C L ++ + + + ++N +Y
Sbjct 393 DKFAIPNSRKVDLQVGKSGYLQSFNYKIDTAVSSCQLYYSLPAANVSVTHYNPSSWNRRY 452
Query 441 RYLRHGKLRPFERD--ISNVPFSPDGKPCTPPALNCYWPLND 480
++ D S F+ C C
Sbjct 453 GFINQSFGSRGLHDAVYSQQCFNTPNTYCPCRTSQCIGGAGT 494
>sp|Q5MQD0|SPIKE_CVHN1 Spike glycoprotein OS=Human coronavirus
HKU1 (isolate N1) OX=443239 GN=S PE=1 SV=1
Length=1356
Score = 892 bits (2306), Expect = 0.0, Method: Composition-based stats.
Identities = 284/972 (29%), Positives = 455/972 (47%), Gaps = 71/972 (7%)
Query 314 VRFPNITNLCPFGEVFNATKFP----SVYAWERKKISNCVADYSVLYNSTFFSTFKCYGV 369
+ ++ C A + +W R+ N + S F
Sbjct 414 YKIDTTSSSCQLYYSLPAINVTINNYNPSSWNRRYGFN-NFNLSSHSVVYSRYCFSVNNT 472
Query 370 SATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLA-WNTRNI 428
F SF P + I NY+ + W +
Sbjct 473 ---------FCPCAKPSFA--SSCKSHKPPSASCPIGT-NYRSCESTTVLDHTDWCRCSC 520
Query 429 DATSTGNYNYKYRYLRHGKLRPFERDISN-VPFSPDGKPCTPPALNCYWPLNDY-GFYTT 486
Y+ + + + E V G ++C + + G+
Sbjct 521 LPDPITAYDPRSCSQKKSLVGVGEHCAGFGVDEEKCGVLDGSYNVSCLCSTDAFLGWSYD 580
Query 487 TGIGYQPYRVVVLSFELLNA--PATVCGPKL---STDLIKNQCVNFNFNGLTGTGVLTP- 540
T + R + S +LN T C L +T++ + CV+++ G+TG G+
Sbjct 581 TCVSNN--RCNIFSNFILNGINSGTTCSNDLLQPNTEVFTDVCVDYDLYGITGQGIFKEV 638
Query 541 SSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQD 600
S+ + +Q D + +D T++ +I PC G VS +S +A+LY++
Sbjct 639 SAVYYNSWQNLLYDSNGNIIGFKDFVTNKTYNIFPCYAGRVSAAF--HQNASSLALLYRN 696
Query 601 VNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIGAEHVD--TSYECDIPIGAGICA 658
+ C+ V I T F + GC+ A+++ + C + +G+G C
Sbjct 697 LKCSYVLNNISL-----------TTQPYFDSYLGCVFNADNLTDYSVSSCALRMGSGFCV 745
Query 659 SYHTVSLLRSTSQKSIVA--YTMSLGADSSIAYSNNTI---------AIPTNFSISITTE 707
Y++ S S ++ ++ Y ++++ N++I IPTNF+I E
Sbjct 746 DYNSPSSSSSRRKRRSISASYRFVTFEPFNVSFVNDSIESVGGLYEIKIPTNFTIVGQEE 805
Query 708 VMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQV 767
+ + K ++DC++++C + C +LL +YG+FC +N L + D V +
Sbjct 806 FIQTNSPKVTIDCSLFVCSNYAACHDLLSEYGTFCDNINSILDEVNGLLDTTQLHVADTL 865
Query 768 KQMYKTPTLK------YFGGFNFSQI---LPDPLKPTKRSFIEDLLFNKVTLADAGFMKQ 818
Q + NF + L + RSF EDLLF+KV L+D GF++
Sbjct 866 MQGVTLSSNLNTNLHFDVDNINFKSLVGCLGPHCGSSSRSFFEDLLFDKVKLSDVGFVEA 925
Query 819 YGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQI 878
Y C G RDL+C Q FNG+ VLPP+L++ I+ YT A W+ AG I
Sbjct 926 YNNCTGGSEIRDLLCVQSFNGIKVLPPILSESQISGYTTAATVAAMFPPWSAAAG----I 981
Query 879 PFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNA 938
PF++ + YR NG+GVT +VL +NQK IA FN A+ IQ + T++AL K+Q VVN NA
Sbjct 982 PFSLNVQYRINGLGVTMDVLNKNQKLIATAFNNALLSIQNGFSATNSALAKIQSVVNSNA 1041
Query 939 QALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAA 998
QALN+L++QL + FGAISS L +ILSRLD +EA+VQIDRLI GRL +L YV+QQL +
Sbjct 1042 QALNSLLQQLFNKFGAISSSLQEILSRLDALEAQVQIDRLINGRLTALNAYVSQQLSDIS 1101
Query 999 EIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFT 1058
++ A LA K++ECV QS R++FCG G H++S Q AP+G++F+H +Y P +
Sbjct 1102 LVKFGAALAMEKVNECVKSQSPRINFCGNGNHILSLVQNAPYGLLFMHFSYKPISFKTVL 1161
Query 1059 TAPAICHEGK-AYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN 1117
+P +C G P++G F+ + W T +++ P+ I+ N C V
Sbjct 1162 VSPGLCISGDVGIAPKQGYFIKHNDHWMFTGSSYYYPEPISDKNVVFMNTCSVNFTKAPL 1221
Query 1118 TVYDPLQPELDSFKEELDKYFKNHTSPDVDLG-DISGINASVVNIQKEIDRLNEVAKNLN 1176
+ P+L F+ EL +FKN TS +L ++ INA+ +++ E++ + E K+LN
Sbjct 1222 VYLNHSVPKLSDFESELSHWFKNQTSIAPNLTLNLHTINATFLDLYYEMNLIQESIKSLN 1281
Query 1177 ESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCC 1236
S I+L+++G YE Y+KWPWYVWL I +++ +CC T C S C +CC
Sbjct 1282 NSYINLKDIGTYEMYVKWPWYVWLLISFSFIIFLVLLFFICCCTGCGSA--CFSKCHNCC 1339
Query 1237 KFDEDDSEPVLK 1248
+ V+K
Sbjct 1340 DEYGGHHDFVIK 1351
Score = 420 bits (1079), Expect = 3e-124, Method: Composition-based stats.
Identities = 114/516 (22%), Positives = 195/516 (38%), Gaps = 65/516 (13%)
Query 1 MFIFLLFLTLTSGSDLD-RCTTFD----DVQAPNYTQ---HTSSMRGVYYPDEIFRSDTL 52
M + + L T D CT F + P ++ S G YY D +
Sbjct 1 MLLIIFILPTTLAVIGDFNCTNFAINDLNTTVPRISEYVVDVSYGLGTYY-----ILDRV 55
Query 53 YLTQDLFLPFYSNVTGFHTINHTFGNP------------VIPFKDGIYFAATEKSNVVRG 100
YL + Y +G + + + + F +GI F+ + + +
Sbjct 56 YLNTTILFTGYFPKSGANFRDLSLKGTTYLSTLWYQKPFLSDFNNGI-FSRVKNTKLYVN 114
Query 101 ---------WVFGSTMNNKSQSVIIINNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTM 151
V GS N S ++++ ++ + I AC + +C+ P ++ +
Sbjct 115 KTLYSEFSTIVIGSVFINNSYTIVVQPHNGVLEITACQYTMCEYPHTICKSKGSSRNESW 174
Query 152 IFDNAFN-CTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLP 210
FD + C F+ F+ +VS F F + G Y Y +P
Sbjct 175 HFDKSEPLCLFK---KNFTYNVSTD------WLYFHFYQERGTFYAYYA------DSGMP 219
Query 211 SGFNTLKPIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENG 270
+ F +F L LG ++++ + + Y+V L ++LK+D G
Sbjct 220 TTF-----LFSLYLGTLLSHYYVLPLTCNAISSNTDNETLQYWVTPLSKRQYLLKFDNRG 274
Query 271 TITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVR-FPNITNLCPFGEVF 329
IT+AVDCS + +E++C KS + G+Y S F V P V R P++ + C +
Sbjct 275 VITNAVDCSSSFFSEIQCKTKSLLPNTGVYDLSGFTVKPVATVHRRIPDLPD-CDIDKWL 333
Query 330 NATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVV 389
N PS WERK SNC + S L +F C +K+ CF ++ D F +
Sbjct 334 NNFNVPSPLNWERKIFSNCNFNLSTLLRLVHTDSFSCNNFDESKIYGSCFKSIVLDKFAI 393
Query 390 KGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDAT----STGNYNYKYRYLRH 445
+ G +G + NYK+ C L ++ I+ T + ++N +Y +
Sbjct 394 PNSRRSDLQLGSSGFLQSSNYKIDTTSSSCQLYYSLPAINVTINNYNPSSWNRRYGFNNF 453
Query 446 GKLRPFERDISNVPFSPD--GKPCTPPALNCYWPLN 479
L S FS + PC P+ +
Sbjct 454 -NLSSHSVVYSRYCFSVNNTFCPCAKPSFASSCKSH 488
>sp|P27655|SPIKE_CVPR8 Spike glycoprotein OS=Porcine respiratory
coronavirus (strain 86/137004 / isolate British) OX=33736
GN=S PE=3 SV=1
Length=1225
Score = 840 bits (2169), Expect = 0.0, Method: Composition-based stats.
Identities = 285/1126 (25%), Positives = 459/1126 (41%), Gaps = 167/1126 (15%)
Query 170 LDVSEKSGNFKHLREFVFKNKDGFLYVY--KGYQPIDVVRDLPSGFNTLKPIFKLPLGIN 227
+ + +F E F +G Y Y + + LP + IN
Sbjct 150 YNDTVSDSSFSSYGEIPFGVTNGPRYCYVLYNGTALKYLGTLPPSVKEIAISKWGHFYIN 209
Query 228 ITNFRA-ILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAEL 286
NF + G S + + Y T +++ EN IT+ C + + +
Sbjct 210 GYNFFSTFPIDCISFNLTTGDSDVFWTIAYTSYTEALVQV-ENTAITNVTYC-NSYVNNI 267
Query 287 KCSVKSFEIDKGIYQTSNFRV-VPSGDVVRFP--------NITNLCPFGEVFNATKFPSV 337
KCS + ++ G Y S+ V + VV P NIT S
Sbjct 268 KCSQLTANLNNGFYPVSSSEVGSVNKSVVLLPSFLTHTIVNITIGLGMKRSGYGQPIAST 327
Query 338 YAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQI 397
+ + + D F Y ++ C S ++ + F DV
Sbjct 328 LSNITLPMQDNNTD----VYCVRSDQFSVY------VHSTCKSALWDNVFKRNCTDVLD- 376
Query 398 APGQTGVIADYNYKLPDDFMGCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISN 457
+ T T +++ + + F +S
Sbjct 377 ---------------------------ATAVIKTGTCPFSFD-KLNNYLTFNKFCLSLSP 408
Query 458 VPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST 517
V + N + Y + ++ P+ G +
Sbjct 409 VGANCKFDVAARTRTNDQF-------------VRSLYVIYEEGDSIVGVPSDNSGLHDLS 455
Query 518 DLIKNQCVNFNFNGLTGTGVLTPSSKRFQP---FQQFGRDVSDFTDSVRDPKTSEILDIS 574
L + C ++N G TG G++ +++ + D+ F ++ I ++
Sbjct 456 VLHLDSCTDYNIYGRTGVGIIRQTNRTLLSGLYYTSLSGDLLGF----KNVSDGVIYSVT 511
Query 575 PCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAG 634
PC + I G + ++ + + T + +TP + YS N G
Sbjct 512 PCDVSAQAAIIDGAIVGAITSINSELLALTHWT-------ITPNFYYYSIYNYTNDKTRG 564
Query 635 CLIGAEHVDTSYECDIPI---GAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSN 691
IG+ VD C+ I G+C + V + T S G I+ N
Sbjct 565 TPIGSNDVD----CEPVITYSNIGVCKNGALV----------FINVTHSDGDVQPISTGN 610
Query 692 NTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSG 751
+ IPTNF+IS+ E + V S+DC+ Y+C + C LL QY S C + +AL+
Sbjct 611 --VTIPTNFTISVQVEYIQVYTTPVSIDCSRYVCNGNPRCNKLLTQYVSACQTIEQALAM 668
Query 752 IAAEQDRNTREVFAQVKQMYKTPTLKYF----------------GGF---NFSQILP-DP 791
A ++ + + K +++ F GGF ILP D
Sbjct 669 GARLENMEVDSMLFVSENALKLASVEAFNSSETLDPIYKEWPNIGGFWLEGLKYILPSDN 728
Query 792 LKPTKRSFIEDLLFNKVTLADAGFMKQ-YGECLGDINARDLICAQKFNGLTVLPPLLTDD 850
K RS IEDLLF+KV + G + + Y C G + DL+CAQ +NG+ VLP + D
Sbjct 729 SKRKYRSAIEDLLFSKVVTSGLGTVDEDYKRCTGGYDIADLVCAQYYNGIMVLPGVANAD 788
Query 851 MIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFN 910
+ YTA+L G G A+ IPFA+ + R N + + +VL +NQ+ +A+ FN
Sbjct 789 KMTMYTASLAGGITLG---ALGGGAVAIPFAVAVQARLNYVALQTDVLNKNQQILASAFN 845
Query 911 KAISQIQE--------------SLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAIS 956
+AI I + LTT + AL K+QDVVN QAL L QL +NF AIS
Sbjct 846 QAIGNITQSFGKVNDAIHQTSRGLTTVAKALAKVQDVVNTQGQALRHLTVQLQNNFQAIS 905
Query 957 SVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVL 1016
S ++DI +RLD++ A+ Q+DRLITGRL +L +V+Q L R AE+RAS LA K++ECV
Sbjct 906 SSISDIYNRLDELSADAQVDRLITGRLTALNAFVSQTLTRQAEVRASRQLAKDKVNECVK 965
Query 1017 GQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICH-EGKAYFP--- 1072
QS R FCG G HL S AAP+G++F H +P+ T IC +G F
Sbjct 966 SQSHRFGFCGNGTHLFSLANAAPNGMIFFHTVLLPTAYETVTAWSGICALDGDRTFGLVV 1025
Query 1073 ---REGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPLQPEL-- 1127
+ +F ++++T R + P++ T+ + CDV+ + + P+
Sbjct 1026 KDVQLTLFRNLDDNFYLTPRTMYQPRVATSSDFVQIEGCDVLFVNTTVSDLPSIIPDYID 1085
Query 1128 --DSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLN--------------EV 1171
+ ++ L+ + N T P++ + NA+ +N+ EID L +
Sbjct 1086 INQTVQDILENFRPNWTVPELTM---DVFNATYLNLTGEIDDLEFRSEKLHNTTVELAIL 1142
Query 1172 AKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLC 1217
N+N +L++L+ L + E Y+KWPWYVWL + GL+ I + +LL
Sbjct 1143 IDNINNTLVNLEWLNRIETYVKWPWYVWL--LIGLVVIFCIPLLLF 1186
>sp|P10033|SPIKE_FIPV Spike glycoprotein OS=Feline coronavirus
(strain FIPV WSU-79/1146) OX=33734 GN=S PE=1 SV=1
Length=1452
Score = 838 bits (2164), Expect = 0.0, Method: Composition-based stats.
Identities = 239/836 (29%), Positives = 377/836 (45%), Gaps = 108/836 (13%)
Query 489 IGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFNGLTGTGVLTPSSKRFQP- 547
+ Y + ++ P+ G + L + C ++N G TG G++ ++
Sbjct 654 VVRSLYVIYEEGDNIVGVPSDNSGLHDLSVLHLDSCTDYNIYGRTGVGIIRRTNSTLLSG 713
Query 548 --FQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTD 605
+ D+ F ++ I ++PC + + G + ++ + + T
Sbjct 714 LYYTSLSGDLLGF----KNVSDGVIYSVTPCDVSAQAAVIDGAIVGAMTSINSELLGLTH 769
Query 606 VSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPI---GAGICASYHT 662
+T TP + YS N + G I + VD C+ I G+C +
Sbjct 770 WTT-------TPNFYYYSIYNYTSERTRGTAIDSNDVD----CEPVITYSNIGVCKNGAL 818
Query 663 VSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNM 722
V + T S G I+ N + IPTNF+IS+ E M V S+DC
Sbjct 819 V----------FINVTHSDGDVQPISTGN--VTIPTNFTISVQVEYMQVYTTPVSIDCAR 866
Query 723 YICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVF------------------ 764
Y+C + C LL QY S C + +AL+ A ++ +
Sbjct 867 YVCNGNPRCNKLLTQYVSACQTIEQALAMGARLENMEVDSMLFVSENALKLASVEAFNST 926
Query 765 ---AQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKR-SFIEDLLFNKVTLADAGFMKQ-Y 819
+ + + + + GG ILP K S IEDLLF+KV + G + + Y
Sbjct 927 ENLDPIYKEWPSIGGSWLGG--LKDILPSHNSKRKYGSAIEDLLFDKVVTSGLGTVDEDY 984
Query 820 GECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIP 879
C G + DL+CAQ +NG+ VLP + D + YTA+L G G A+ IP
Sbjct 985 KRCTGGYDIADLVCAQYYNGIMVLPGVANADKMTMYTASLAGGITLG---ALGGGAVAIP 1041
Query 880 FAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQE--------------SLTTTST 925
FA+ + R N + + +VL +NQ+ +AN FN+AI I + L T +
Sbjct 1042 FAVAVQARLNYVALQTDVLNKNQQILANAFNQAIGNITQAFGKVNDAIHQTSQGLATVAK 1101
Query 926 ALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQS 985
AL K+QDVVN QAL+ L QL +NF AISS ++DI +RLD++ A+ Q+DRLITGRL +
Sbjct 1102 ALAKVQDVVNTQGQALSHLTVQLQNNFQAISSSISDIYNRLDELSADAQVDRLITGRLTA 1161
Query 986 LQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFL 1045
L +V+Q L R AE+RAS LA K++ECV QS+R FCG G HL S AAP+G++F
Sbjct 1162 LNAFVSQTLTRQAEVRASRQLAKDKVNECVRSQSQRFGFCGNGTHLFSLANAAPNGMIFF 1221
Query 1046 HVTYVPSQERNFTTAPAICH-EGKAYFP------REGVFVFNGTSWFITQRNFFSPQIIT 1098
H +P+ T IC +G F + +F +++T R + P++ T
Sbjct 1222 HTVLLPTAYETVTAWSGICASDGDRTFGLVVKDVQLTLFRNLDDKFYLTPRTMYQPRVAT 1281
Query 1099 TDNTFVSGNCDVVIGIINNTVYDPLQPEL----DSFKEELDKYFKNHTSPDVDLGDISGI 1154
+ + CDV+ + P+ + ++ L+ Y N T P+ L
Sbjct 1282 SSDFVQIEGCDVLFVNATVIDLPSIIPDYIDINQTVQDILENYRPNWTVPEFTL---DIF 1338
Query 1155 NASVVNIQKEIDRLN--------------EVAKNLNESLIDLQELGKYEQYIKWPWYVWL 1200
NA+ +N+ EID L + N+N +L++L+ L + E Y+KWPWYVWL
Sbjct 1339 NATYLNLTGEIDDLEFRSEKLHNTTVELAILIDNINNTLVNLEWLNRIETYVKWPWYVWL 1398
Query 1201 GFIAGLIAIVMVTILLCCMTSC---CSCLKGACSCGSCCKFDEDDSEPVLKGVKLH 1253
+ GL+ + + +LL C S C S C + ++ ++ V +H
Sbjct 1399 --LIGLVVVFCIPLLLFCCFSTGCCGCIGCLGSCCHSICSRRQFENYEPIEKVHVH 1452
>sp|P07946|SPIKE_CVPPU Spike glycoprotein OS=Porcine transmissible
gastroenteritis coronavirus (strain Purdue) OX=11151 GN=S
PE=1 SV=2
Length=1447
Score = 835 bits (2158), Expect = 0.0, Method: Composition-based stats.
Identities = 231/795 (29%), Positives = 367/795 (46%), Gaps = 101/795 (13%)
Query 489 IGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFNGLTGTGVLTPSSKRFQP- 547
+ Y + ++ P+ G + L + C ++N G TG G++ +++
Sbjct 649 VVRSLYVIYEEGDNIVGVPSDNSGVHDLSVLHLDSCTDYNIYGRTGVGIIRQTNRTLLSG 708
Query 548 --FQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTD 605
+ D+ F ++ I ++PC + + GT + ++ + + T
Sbjct 709 LYYTSLSGDLLGF----KNVSDGVIYSVTPCDVSAQAAVIDGTIVGAITSINSELLGLTH 764
Query 606 VSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPI---GAGICASYHT 662
+T TP + YS N G I + VD C+ I G+C +
Sbjct 765 WTT-------TPNFYYYSIYNYTNDRTRGTAIDSNDVD----CEPVITYSNIGVCKNGAF 813
Query 663 VSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNM 722
V + T S G I+ N + IPTNF+IS+ E + V S+DC+
Sbjct 814 V----------FINVTHSDGDVQPISTGN--VTIPTNFTISVQVEYIQVYTTPVSIDCSR 861
Query 723 YICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGF 782
Y+C + C LL QY S C + +AL+ A ++ + + K +++ F
Sbjct 862 YVCNGNPRCNKLLTQYVSACQTIEQALAMGARLENMEVDSMLFVSENALKLASVEAFNSS 921
Query 783 -------------------NFSQILPDPLKPT-KRSFIEDLLFNKVTLADAGFMKQ-YGE 821
ILP RS IEDLLF+KV + G + + Y
Sbjct 922 ETLDPIYKEWPNIGGSWLEGLKYILPSHNSKRKYRSAIEDLLFDKVVTSGLGTVDEDYKR 981
Query 822 CLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFA 881
C G + DL+CAQ +NG+ VLP + D + YTA+L G G A+ IPFA
Sbjct 982 CTGGYDIADLVCAQYYNGIMVLPGVANADKMTMYTASLAGGITLG---ALGGGAVAIPFA 1038
Query 882 MQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQE--------------SLTTTSTAL 927
+ + R N + + +VL +NQ+ +A+ FN+AI I + L T + AL
Sbjct 1039 VAVQARLNYVALQTDVLNKNQQILASAFNQAIGNITQSFGKVNDAIHQTSRGLATVAKAL 1098
Query 928 GKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQ 987
K+QDVVN QAL+ L QL +NF AISS ++DI +RLD++ A+ Q+DRLITGRL +L
Sbjct 1099 AKVQDVVNIQGQALSHLTVQLQNNFQAISSSISDIYNRLDELSADAQVDRLITGRLTALN 1158
Query 988 TYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHV 1047
+V+Q L R AE+RAS LA K++ECV QS+R FCG G HL S AAP+G++F H
Sbjct 1159 AFVSQTLTRQAEVRASRQLAKDKVNECVRSQSQRFGFCGNGTHLFSLANAAPNGMIFFHT 1218
Query 1048 TYVPSQERNFTTAPAICH-EGKAYFP------REGVFVFNGTSWFITQRNFFSPQIITTD 1100
+P+ T P IC +G F + +F +++T R + P++ T+
Sbjct 1219 VLLPTAYETVTAWPGICASDGDRTFGLVVKDVQLTLFRNLDDKFYLTPRTMYQPRVATSS 1278
Query 1101 NTFVSGNCDVVIGIINNTVYDPLQPEL----DSFKEELDKYFKNHTSPDVDLGDISGINA 1156
+ CDV+ + + P+ + ++ L+ + N T P++ NA
Sbjct 1279 DFVQIEGCDVLFVNATVSDLPSIIPDYIDINQTVQDILENFRPNWTVPELTF---DIFNA 1335
Query 1157 SVVNIQKEIDRLN--------------EVAKNLNESLIDLQELGKYEQYIKWPWYVWLGF 1202
+ +N+ EID L + N+N +L++L+ L + E Y+KWPWYVWL
Sbjct 1336 TYLNLTGEIDDLEFRSEKLHNTTVELAILIDNINNTLVNLEWLNRIETYVKWPWYVWL-- 1393
Query 1203 IAGLIAIVMVTILLC 1217
+ GL+ I + +LL
Sbjct 1394 LIGLVVIFCIPLLLF 1408
>sp|Q65984|SPIKE_CVCAK Spike glycoprotein OS=Canine coronavirus
(strain K378) OX=33732 GN=S PE=1 SV=1
Length=1453
Score = 835 bits (2158), Expect = 0.0, Method: Composition-based stats.
Identities = 236/818 (29%), Positives = 372/818 (45%), Gaps = 106/818 (13%)
Query 468 TPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNF 527
P NC + + T + Y + ++ P+ G + L + C ++
Sbjct 635 NPVGANCKFDVAARTR-TNEQVVRSLYVIYEEGDNIVGVPSDNSGLHDLSVLHLDSCTDY 693
Query 528 NFNGLTGTGVLTPSSKRFQP---FQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVI 584
N G+TG G++ ++ + D+ F ++ I ++PC + +
Sbjct 694 NIYGITGVGIIRQTNSTLLSGLYYTSLSGDLLGF----KNVSDGVIYSVTPCDVSAHAAV 749
Query 585 TPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIGAEHVDT 644
G + ++ + + T +T TP + YS N + G I + VD
Sbjct 750 IDGAIVGAMTSINSELLGLTHWTT-------TPNFYYYSIYNYTNERTRGTAIDSNDVD- 801
Query 645 SYECDIPI---GAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFS 701
C+ I G+C + V + T S G I+ N + IPTNF+
Sbjct 802 ---CEPIITYSNIGVCKNGALV----------FINVTHSDGDVQPISTGN--VTIPTNFT 846
Query 702 ISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTR 761
IS+ E + V S+DC+ Y+C + C LL QY S C + +AL+ A ++
Sbjct 847 ISVQVEYIQVYTTPVSIDCSRYVCNGNPRCNKLLTQYVSACQTIEQALAMGARLENMEID 906
Query 762 EVF---------------------AQVKQMYKTPTLKYFGGFNFSQILPDPLKPT-KRSF 799
+ + + + + GG ILP RS
Sbjct 907 SMLFVSENALKLASVEAFNSTETLDPIYKEWPNIGGSWLGG--LKDILPSHNSKRKYRSA 964
Query 800 IEDLLFNKVTLADAGFMKQ-YGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAA 858
IEDLLF+KV + G + + Y C G + DL+CAQ +NG+ VLP + DD +A YTA+
Sbjct 965 IEDLLFDKVVTSGLGTVDEDYKRCTGGYDIADLVCAQYYNGIMVLPGVANDDKMAMYTAS 1024
Query 859 LVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQE 918
L G G A+ IPFA+ + R N + + +VL +NQ+ +AN FN+AI I +
Sbjct 1025 LAGGITLGSL---GGGAVSIPFAIAVQARLNYVALQTDVLNKNQQILANAFNQAIGNITQ 1081
Query 919 --------------SLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILS 964
L T + L K+QDVVN QAL+ L QL +NF AISS ++DI +
Sbjct 1082 AFGKVNDAIHQTSQGLATVAKVLAKVQDVVNTQGQALSHLTLQLQNNFQAISSSISDIYN 1141
Query 965 RLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDF 1024
RLD++ A+ Q+DRLITGRL +L +V+Q L R AE+RAS LA K++ECV QS+R F
Sbjct 1142 RLDELSADAQVDRLITGRLTALNAFVSQTLTRQAEVRASRQLAKDKVNECVRSQSQRFGF 1201
Query 1025 CGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICH-EGKAYFP------REGVF 1077
CG G HL S AAP+G++F H +P+ T IC +G F + +F
Sbjct 1202 CGNGTHLFSLANAAPNGMIFFHTVLLPTAYETVTAWSGICASDGDRTFGLVVKDVQLTLF 1261
Query 1078 VFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPLQPEL----DSFKEE 1133
+++T R + P + T+ + CDV+ + P+ + ++
Sbjct 1262 RNLDDKFYLTPRTMYQPIVATSSDFVQIEGCDVLFVNATVIDLPSIIPDYIDINQTVQDI 1321
Query 1134 LDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLN--------------EVAKNLNESL 1179
L+ + N T P++ L NA+ +N+ EI+ L + N+N +L
Sbjct 1322 LENFRPNWTVPELPL---DIFNATYLNLTGEINDLEFRSEKLHNTTVELAILIDNINNTL 1378
Query 1180 IDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLC 1217
++L+ L + E Y+KWPWYVWL + GL+ I + ILL
Sbjct 1379 VNLEWLNRIETYVKWPWYVWL--LIGLVVIFCIPILLF 1414
>sp|P33470|SPIKE_CVPMI Spike glycoprotein OS=Porcine transmissible
gastroenteritis coronavirus (strain Miller) OX=33737 GN=S
PE=3 SV=2
Length=1449
Score = 835 bits (2157), Expect = 0.0, Method: Composition-based stats.
Identities = 281/1126 (25%), Positives = 452/1126 (40%), Gaps = 167/1126 (15%)
Query 170 LDVSEKSGNFKHLREFVFKNKDGFLYVY--KGYQPIDVVRDLPSGFNTLKPIFKLPLGIN 227
+ + +F E F DG Y Y + + LP + IN
Sbjct 374 YNDTVSDSSFSSYGEMPFGVTDGPRYCYVLYNGTALKYLGTLPPSVKEIAISKWGHFYIN 433
Query 228 ITNFRA-ILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAEL 286
NF + G S + + Y T +++ EN IT C + + +
Sbjct 434 GYNFFSTFPIDCISFNLTTGDSDVFWTIAYTSYTEALVQV-ENTAITKVTYC-NSYVNNI 491
Query 287 KCSVKSFEIDKGIYQTSNFRVV---------PSGDVVRFPNITNLCPFGEVFNATKFPSV 337
KCS + ++ G Y S+ V PS NIT S
Sbjct 492 KCSQLTANLNNGFYPVSSSEVGLVNKSVVLLPSFYTHTIVNITIGLGMKRSGYGQPIAST 551
Query 338 YAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQI 397
+ + + D F Y ++ C S+++ + F DV
Sbjct 552 LSNITLPMQDNNTD----VYCIRSDQFSVY------VHSTCKSSLWDNVFKRNCTDVLD- 600
Query 398 APGQTGVIADYNYKLPDDFMGCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISN 457
+ T T +++ + + F +S
Sbjct 601 ---------------------------ATAVIKTGTCPFSFD-KLNNYLTFNKFCLSLSP 632
Query 458 VPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST 517
V + N + Y + ++ P+ G +
Sbjct 633 VGANCKFDVAARTRTNDQ-------------VVRSLYVIYEEGDNIVGVPSDNSGLHDLS 679
Query 518 DLIKNQCVNFNFNGLTGTGVLTPSSKRFQP---FQQFGRDVSDFTDSVRDPKTSEILDIS 574
L + C ++N G TG G++ +++ + D+ F ++ I ++
Sbjct 680 VLHLDSCTDYNIYGRTGVGIIRQTNRTLLSGLYYTSLSGDLLGF----KNVSDGVIYSVT 735
Query 575 PCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAG 634
PC + + GT + ++ + + T +T TP + YS N G
Sbjct 736 PCDVSAQAAVIDGTIVGAITSINSELLGLTHWTT-------TPNFYYYSIYNYTNDRTRG 788
Query 635 CLIGAEHVDTSYECDIPI---GAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSN 691
I + VD C+ I G+C + V + T S G I+ N
Sbjct 789 TAIDSNDVD----CEPVITYSNIGVCKNGALV----------FINVTHSDGDVQPISTGN 834
Query 692 NTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSG 751
+ IPTNF+IS+ E + V S+DC+ Y+C + C LL QY S C + +AL+
Sbjct 835 --VTIPTNFTISVQVEYIQVYTTPVSIDCSRYVCNGNPRCNKLLTQYVSACQTIEQALAM 892
Query 752 IAAEQDRNTREVFAQVKQMYKTPTLKYFGGF-------------------NFSQILP-DP 791
A ++ + + K +++ F ILP D
Sbjct 893 GARLENMEVGSMLFVSENALKLASVEAFNSSETLDPIYKEWPNIGGSWLEGLKYILPSDN 952
Query 792 LKPTKRSFIEDLLFNKVTLADAGFMKQ-YGECLGDINARDLICAQKFNGLTVLPPLLTDD 850
K RS IEDLLF KV + G + + Y C G + DL+CAQ +NG+ VLP + D
Sbjct 953 SKRKYRSAIEDLLFAKVVTSGLGTVDEDYKRCTGGYDIADLVCAQYYNGIMVLPGVANAD 1012
Query 851 MIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFN 910
+ YTA+L G G A+ IPFA+ + R N + + +VL +NQ+ +A+ FN
Sbjct 1013 KMTMYTASLAGGITLG---ALGGGAVAIPFAVAVQARLNYVALQTDVLNKNQQILASAFN 1069
Query 911 KAISQIQE--------------SLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAIS 956
+AI I + L T + AL K+QDVVN QAL+ L QL +NF AIS
Sbjct 1070 QAIGNITQSFGKVNDAIHQTSRGLATVAKALAKVQDVVNTQGQALSHLTVQLQNNFQAIS 1129
Query 957 SVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVL 1016
S ++DI +RLD++ A+ Q+DRLITGRL +L +V+Q L R AE+RAS LA K++ECV
Sbjct 1130 SSISDIYNRLDELSADAQVDRLITGRLTALNAFVSQTLTRQAEVRASRQLAKDKVNECVR 1189
Query 1017 GQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICH-EGKAYFP--- 1072
QS+R FCG G HL S AAP+G++F H +P+ T IC +G F
Sbjct 1190 SQSQRFGFCGNGTHLFSLANAAPNGMIFFHTVLLPTAYETVTAWAGICALDGDRTFGLVV 1249
Query 1073 ---REGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPLQPEL-- 1127
+ +F +++T R + P++ T+ + CDV+ + + P+
Sbjct 1250 KDVQLTLFRNLDDKFYLTPRTMYQPRVATSSDFVQIEGCDVLFVNATVSDLPSIIPDYID 1309
Query 1128 --DSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLN--------------EV 1171
+ ++ L+ + N T P++ NA+ +N+ EID L +
Sbjct 1310 INQTVQDILENFRPNWTVPELTF---DIFNATYLNLTGEIDDLEFRSEKLHNTTVELAIL 1366
Query 1172 AKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLC 1217
N+N +L++L+ L + E Y+KWPWYVWL + GL+ I + +LL
Sbjct 1367 IDNINNTLVNLEWLNRIETYVKWPWYVWL--LIGLVVIFCIPLLLF 1410
>sp|Q7T6T3|SPIKE_CVCBG Spike glycoprotein OS=Canine coronavirus
(strain BGF10) OX=441619 GN=S PE=3 SV=1
Length=1453
Score = 834 bits (2155), Expect = 0.0, Method: Composition-based stats.
Identities = 234/815 (29%), Positives = 375/815 (46%), Gaps = 102/815 (13%)
Query 468 TPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNF 527
P NC + + G+G Y + ++ P+ G + L + C ++
Sbjct 635 NPTGANCKFDVVARTRTNEQGVG-SLYVIYEEGDNIVGVPSDNSGLHDLSVLHLDSCTDY 693
Query 528 NFNGLTGTGVLTPSSKRFQP---FQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVI 584
N G G G++ ++ + D+ F ++ + ++PC + +
Sbjct 694 NIYGRNGVGIIRKTNSTLLSGLYYTSLSGDLLGF----KNVSDGVVYSVTPCEVSAQAAV 749
Query 585 TPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIGAEHVDT 644
G + ++ + + T +T TP + YS N + G + + VD
Sbjct 750 IDGAIVGAMTSINSELLGLTHWTT-------TPNFYYYSIYNYTNERVRGTVTDSNDVD- 801
Query 645 SYECDIPI---GAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFS 701
C+ I G+C + V + T S G I+ N + IPTNF+
Sbjct 802 ---CEPIITYSNIGVCKNGALV----------FINVTHSDGDVQPISTGN--VTIPTNFT 846
Query 702 ISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTR 761
IS+ E + V S+DC+ Y+C ++ C LL QY S C + +AL+ A ++
Sbjct 847 ISVQVEYIQVYTTPVSIDCSRYVCNGNSRCNKLLTQYVSACHTIEQALAMGARLENMEID 906
Query 762 EVFAQVKQMYKTPTLKYFGGFN-------------------FSQILPDPLKPT-KRSFIE 801
+ + K +++ F + ILP RS IE
Sbjct 907 SMLFVSENALKLASVEAFNSTDNLDPIYREWPNIGGSWLGGLKDILPSHNSKRKYRSAIE 966
Query 802 DLLFNKVTLADAGFMKQ-YGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALV 860
DLLF+KV + G + + Y C G + DL+CAQ +NG+ VLP + DD +A YTA+L
Sbjct 967 DLLFDKVVTSGLGTVDEDYKRCTGGYDIADLVCAQYYNGIMVLPGVANDDKMAMYTASLA 1026
Query 861 SGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQE-- 918
G G A+ IPFA+ + R N + + +VL +NQ+ +AN FN+AI I +
Sbjct 1027 GGITLG---ALGGGAVSIPFAVAVQARLNYVALQTDVLNKNQQILANAFNQAIGNITQAF 1083
Query 919 ------------SLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRL 966
L T + AL K+QDVVN QAL+ L QL +NF AISS ++DI +RL
Sbjct 1084 GNVNDAIHQTSKGLATVAKALAKVQDVVNTQGQALSHLTVQLQNNFQAISSSISDIYNRL 1143
Query 967 DKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCG 1026
D++ A+ Q+DRLITGRL +L +V+Q L R AE+RAS LA K++ECV QS+R FCG
Sbjct 1144 DELSADAQVDRLITGRLTALNAFVSQTLTRQAEVRASRQLAKDKVNECVRSQSQRFGFCG 1203
Query 1027 KGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICH-EGKAYFP------REGVFVF 1079
G HL S AAP+G++F H +P+ T IC +G F + +F
Sbjct 1204 NGTHLFSLANAAPNGMIFFHTVLLPTAYETVTAWSGICASDGNRTFGLVVKDVQLTLFRN 1263
Query 1080 NGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPLQPEL----DSFKEELD 1135
+++T R + P++ T+ + CDV+ + P+ + ++ L+
Sbjct 1264 LDYKFYLTPRTMYQPRVATSSDFVQIEGCDVLFVNATVIELPSIIPDYIDINQTVQDILE 1323
Query 1136 KYFKNHTSPDVDLGDISGINASVVNIQKEIDRLN--------------EVAKNLNESLID 1181
+ N T P++ L NA+ +N+ EI+ L + N+N +L++
Sbjct 1324 NFRPNWTVPELPL---DIFNATYLNLTGEINDLEFRSEKLHNTTLELATLIDNINNTLVN 1380
Query 1182 LQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILL 1216
L+ L + E Y+KWPWYVWL + GL+ I + +LL
Sbjct 1381 LEWLNRIETYVKWPWYVWL--LIGLVVIFCIPLLL 1413
>sp|P24413|SPIKE_CVPRM Spike glycoprotein OS=Porcine respiratory
coronavirus (strain RM4) OX=11148 GN=S PE=1 SV=1
Length=1225
Score = 833 bits (2152), Expect = 0.0, Method: Composition-based stats.
Identities = 238/795 (30%), Positives = 372/795 (47%), Gaps = 101/795 (13%)
Query 489 IGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFNGLTGTGVLTPSSKRFQP- 547
+ Y + ++ P+ G + L + C ++N G TG G++ +++
Sbjct 427 VVRSLYVIYEEGDSIVGVPSDNSGLHDLSVLHLDSCTDYNIYGRTGVGIIRQTNRTILSG 486
Query 548 --FQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTD 605
+ D+ FT + I ++PC + I GT + ++ + + T
Sbjct 487 LYYTSLSGDLLGFT----NVSDGVIYSVTPCDVSAQAAIIDGTIVGAITSINSELLGLTH 542
Query 606 VSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPI---GAGICASYHT 662
+T TP + YS N G IG+ VD C+ I G+C +
Sbjct 543 WTT-------TPNFYYYSIYNYTNDKTRGTPIGSNDVD----CEPVITYSNIGVCKNGAL 591
Query 663 VSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNM 722
V + T S G I+ N + IPTNF+IS+ E + V S+DC+
Sbjct 592 V----------FINVTHSDGDVQPISTGN--VTIPTNFTISVQVEYIQVYTTPVSIDCSR 639
Query 723 YICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYF--- 779
Y+C + C LL QY S C + +AL+ A ++ + + K +++ F
Sbjct 640 YVCNGNPRCNKLLTQYVSACQTIEQALAMGARLENMEVDSMLFVSENALKLASVEAFNSS 699
Query 780 -------------GGF---NFSQILP-DPLKPTKRSFIEDLLFNKVTLADAGFMKQ-YGE 821
GGF ILP D K RS IEDLLF+KV + G + + Y
Sbjct 700 ETLDPIYKEWPNIGGFWLEGLKYILPSDNSKRKYRSAIEDLLFSKVVTSGLGTVDEDYKR 759
Query 822 CLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFA 881
C G + DL+CAQ +NG+ VLP + D + YTA+L G G A+ IPFA
Sbjct 760 CTGGYDIADLVCAQYYNGIMVLPGVANADKMTMYTASLAGGITLG---ALGGGAVAIPFA 816
Query 882 MQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQE--------------SLTTTSTAL 927
+ + R N + + +VL +NQ+ +A+ FN+AI I + LTT + AL
Sbjct 817 VAVQARLNYVALQTDVLNKNQQILASAFNQAIGNITQSFGKVNDAIHQTSRGLTTVAKAL 876
Query 928 GKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQ 987
K+QDVVN QAL L QL +NF AISS ++DI +RLD++ A+ Q+DRLITGRL +L
Sbjct 877 AKVQDVVNTQGQALRHLTVQLQNNFQAISSSISDIYNRLDELSADAQVDRLITGRLTALN 936
Query 988 TYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHV 1047
+V+Q L R AE+RAS LA K++ECV QS+R FCG G HL S AAP+G++F H
Sbjct 937 AFVSQTLTRQAEVRASRQLAKDKVNECVRSQSQRFGFCGNGTHLFSLANAAPNGMIFFHT 996
Query 1048 TYVPSQERNFTTAPAICH-EGKAYFP------REGVFVFNGTSWFITQRNFFSPQIITTD 1100
+P+ T IC + F + +F +++T R + P++ T+
Sbjct 997 VLLPTAYETVTAWSGICALDVDRTFGLVVKDVQLTLFRNLDDKFYLTPRTMYQPRVATSS 1056
Query 1101 NTFVSGNCDVVIGIINNTVYDPLQPEL----DSFKEELDKYFKNHTSPDVDLGDISGINA 1156
+ CDV+ + + P+ + ++ L+ + N T P++ L NA
Sbjct 1057 DFVQIEGCDVLFVNTTVSDLPSIIPDYIDINQTVQDILENFRPNWTVPELTL---DVFNA 1113
Query 1157 SVVNIQKEIDRLN--------------EVAKNLNESLIDLQELGKYEQYIKWPWYVWLGF 1202
+ +N+ EID L + N+N ++++L+ L + E Y+KWPWYVWL
Sbjct 1114 TYLNLTGEIDDLEFRSEKLHNTTVELAILIDNINNTVVNLEWLNRIETYVKWPWYVWL-- 1171
Query 1203 IAGLIAIVMVTILLC 1217
+ GL+ I + +LL
Sbjct 1172 LIGLVVIFCIPLLLF 1186
>sp|Q01977|SPIKE_CVPRT Spike glycoprotein OS=Porcine transmissible
gastroenteritis coronavirus (strain NEB72-rt) OX=33738
GN=S PE=3 SV=1
Length=1447
Score = 832 bits (2150), Expect = 0.0, Method: Composition-based stats.
Identities = 230/795 (29%), Positives = 366/795 (46%), Gaps = 101/795 (13%)
Query 489 IGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFNGLTGTGVLTPSSKRFQP- 547
+ Y + ++ P+ G + L + C ++N G TG G++ +++
Sbjct 649 VVRSLYVIYEEGDNIVGVPSDNSGVHDLSVLHLDSCTDYNIYGRTGVGIIRKTNRTLLSG 708
Query 548 --FQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTD 605
+ D+ F ++ I ++PC + + GT + ++ + + T
Sbjct 709 LYYTSLSGDLLGF----KNVSDGVIYSVTPCDVSAQAAVIDGTIVGAITSINSELLGLTH 764
Query 606 VSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPI---GAGICASYHT 662
+T TP + YS N G I + VD C+ I G+C +
Sbjct 765 WTT-------TPNFYYYSIYNYTNDRTRGTAIDSNDVD----CEPVITYSNIGVCKNGAF 813
Query 663 VSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNM 722
V + T S G I+ N + IPTNF+IS+ E + V S+DC+
Sbjct 814 V----------FINVTHSDGDVQPISTGN--VTIPTNFTISVQVEYIQVYTTPVSIDCSR 861
Query 723 YICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGF 782
Y+C + C LL QY S C + +AL+ A ++ + + K +++ F
Sbjct 862 YVCNGNPRCNKLLTQYVSACQTIEQALAMGARLENMEVDSMLFVSENALKLASVEAFNSS 921
Query 783 -------------------NFSQILPDPLKPT-KRSFIEDLLFNKVTLADAGFMKQ-YGE 821
ILP RS IEDLLF+KV + G + + Y
Sbjct 922 ETLDPIYKEWPNIGGSWLEGLKYILPSHNSKRKYRSAIEDLLFDKVVTSGLGTVDEDYKR 981
Query 822 CLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFA 881
C G + DL+CAQ +NG+ VLP + D + YTA+L G G A+ IPFA
Sbjct 982 CTGGYDIADLVCAQYYNGIMVLPGVANADKMTMYTASLAGGITLG---ALGGGAVAIPFA 1038
Query 882 MQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQE--------------SLTTTSTAL 927
+ + R N + + +VL +NQ+ +A+ FN+AI I + L T + AL
Sbjct 1039 VAVQARLNYVALQTDVLNKNQQILASAFNQAIGNITQSFGKVNDAIHXTSRGLATVAKAL 1098
Query 928 GKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQ 987
K+QDVV QAL+ L QL +NF AISS ++DI +RLD++ A+ Q+DRLITGRL +L
Sbjct 1099 AKVQDVVXIQGQALSHLTVQLQNNFQAISSSISDIYNRLDELSADAQVDRLITGRLTALN 1158
Query 988 TYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHV 1047
+V+Q L R AE+RAS LA K++ECV QS+R FCG G HL S AAP+G++F H
Sbjct 1159 AFVSQTLTRQAEVRASRQLAKDKVNECVRSQSQRFGFCGNGTHLFSLANAAPNGMIFFHT 1218
Query 1048 TYVPSQERNFTTAPAICH-EGKAYFP------REGVFVFNGTSWFITQRNFFSPQIITTD 1100
+P+ T P IC +G F + +F +++T R + P++ T+
Sbjct 1219 VLLPTAYETVTAWPGICASDGDRTFGLVVKDVQLTLFRNLDDKFYLTPRTMYQPRVATSS 1278
Query 1101 NTFVSGNCDVVIGIINNTVYDPLQPEL----DSFKEELDKYFKNHTSPDVDLGDISGINA 1156
+ CDV+ + + P+ + ++ L+ + N T P++ NA
Sbjct 1279 DFVQIEGCDVLFVNATVSDLPSIIPDYIDINQTVQDILENFRPNWTVPELTF---DIFNA 1335
Query 1157 SVVNIQKEIDRLN--------------EVAKNLNESLIDLQELGKYEQYIKWPWYVWLGF 1202
+ +N+ EID L + N+N +L++L+ L + E Y+KWPWYVWL
Sbjct 1336 TYLNLTGEIDDLEFRSEKLHNTTVELAILIDNINNTLVNLEWLNRIETYVKWPWYVWL-- 1393
Query 1203 IAGLIAIVMVTILLC 1217
+ GL+ I + +LL
Sbjct 1394 LIGLVVIFCIPLLLF 1408
>sp|P18450|SPIKE_CVPFS Spike glycoprotein OS=Porcine transmissible
gastroenteritis coronavirus (strain FS772/70) OX=11150
GN=S PE=3 SV=2
Length=1449
Score = 829 bits (2141), Expect = 0.0, Method: Composition-based stats.
Identities = 278/1126 (25%), Positives = 451/1126 (40%), Gaps = 167/1126 (15%)
Query 170 LDVSEKSGNFKHLREFVFKNKDGFLYVY--KGYQPIDVVRDLPSGFNTLKPIFKLPLGIN 227
+ + +F E F DG Y Y + + LP + IN
Sbjct 374 YNDTVSDSSFSSYGEIPFGVTDGPRYCYVLYNGTALKYLGTLPPSVKEIAISKWGHFYIN 433
Query 228 ITNFRA-ILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAEL 286
NF + G S + + Y T +++ EN IT C + + +
Sbjct 434 GYNFFSTFPIDCISFNLTTGDSDVFWTIAYTSYTEALVQV-ENTAITKVTYC-NSYVNNI 491
Query 287 KCSVKSFEIDKGIYQTSNFRVV---------PSGDVVRFPNITNLCPFGEVFNATKFPSV 337
KCS + ++ G Y S+ V P+ NIT S
Sbjct 492 KCSQLTANLNNGFYPVSSSEVGFVNKSVVLLPTFYTHTIVNITIGLGMKRSGYGQPIAST 551
Query 338 YAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQI 397
+ + + D F Y ++ C S ++ + F DV
Sbjct 552 LSNITLPMQDNNID----VYCIRSDQFSVY------VHSTCKSALWDNVFKRNCTDVLD- 600
Query 398 APGQTGVIADYNYKLPDDFMGCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISN 457
+ T T +++ + + F +S
Sbjct 601 ---------------------------ATAVIKTGTCPFSFD-KLNNYLTFNKFCLSLSP 632
Query 458 VPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST 517
V + N + Y + ++ P+ G +
Sbjct 633 VGANCKFDVAARTRANDQ-------------VVRSLYVIYEEGDNIVGVPSDNSGLHDLS 679
Query 518 DLIKNQCVNFNFNGLTGTGVLTPSSKRFQP---FQQFGRDVSDFTDSVRDPKTSEILDIS 574
L + C ++N G +G G++ +++ + D+ F ++ I ++
Sbjct 680 VLHLDSCTDYNIYGRSGVGIIRQTNRTLLSGLYYTSLSGDLLGF----KNVSDGVIYSVT 735
Query 575 PCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAG 634
PC + + GT + ++ + + T +T TP + YS N G
Sbjct 736 PCDVSAQAAVIDGTIVGAITSINSELLGLTHWTT-------TPNFYYYSIYNYTNDMTRG 788
Query 635 CLIGAEHVDTSYECDIPI---GAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSN 691
I + VD C+ I G+C + V + T S G I+ N
Sbjct 789 TAIDSNDVD----CEPVITYSNIGVCKNGALV----------FINVTHSDGDVQPISTGN 834
Query 692 NTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSG 751
+ IPTNF+IS+ E + V S+DC+ Y+C + C LL QY S C + +AL+
Sbjct 835 --VTIPTNFTISVQVEYIQVYTTPVSIDCSRYVCNGNPRCNKLLTQYVSACQTIEQALAV 892
Query 752 IAAEQDRNTREVFAQVKQMYKTPTLKYFGGF-------------------NFSQILP-DP 791
A ++ + + K +++ F ILP D
Sbjct 893 GARLENMEVDSMLFVSENALKLASVEAFNSSETLDPIYKEWPNIGGSWLEGLKYILPSDN 952
Query 792 LKPTKRSFIEDLLFNKVTLADAGFMKQ-YGECLGDINARDLICAQKFNGLTVLPPLLTDD 850
K RS IEDLLF+KV + G + + Y C G + DL+CAQ +NG+ VLP + D
Sbjct 953 SKRKYRSAIEDLLFSKVVTSGLGTVDEDYKRCTGGYDIADLVCAQYYNGIMVLPGVANAD 1012
Query 851 MIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFN 910
+ YTA+L G G A+ IPFA+ + R N + + +VL +NQ+ +A+ FN
Sbjct 1013 KMTMYTASLAGGITLG---ALGGGAVAIPFAVAVQARLNYVALQTDVLNKNQQILASAFN 1069
Query 911 KAISQIQE--------------SLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAIS 956
+AI I + L T + AL K+QDVVN QAL+ L QL +NF AIS
Sbjct 1070 QAIGNITQSFGKVNDAIHQTSRGLATVAKALAKVQDVVNTQGQALSHLTVQLQNNFQAIS 1129
Query 957 SVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVL 1016
S ++DI +RLD++ A+ +DRLITGRL +L +V+Q L R AE+RAS LA K++ECV
Sbjct 1130 SSISDIYNRLDELSADAHVDRLITGRLTALNAFVSQTLTRQAEVRASRQLAKDKVNECVR 1189
Query 1017 GQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICH-EGKAYFP--- 1072
QS+R FCG G HL S AAP+G++F H +P+ T IC +G F
Sbjct 1190 SQSQRFGFCGNGTHLFSLANAAPNGMIFFHAVLLPTAYETVTAWAGICALDGDRTFGLVV 1249
Query 1073 ---REGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPLQPEL-- 1127
+ +F +++T R + P++ T+ + CDV+ + + P+
Sbjct 1250 KDVQLTLFRNLDDKFYLTPRTMYQPRVATSSDFVQIEGCDVLFVNATLSDLPSIIPDYID 1309
Query 1128 --DSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLN--------------EV 1171
+ ++ L+ + N T P++ NA+ +N+ EID L +
Sbjct 1310 INQTVQDILENFRPNWTVPELTF---DIFNATYLNLTGEIDDLEFRSEKLHNTTVELAIL 1366
Query 1172 AKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLC 1217
N+N +L++L+ L + E Y+KWPWYVWL + GL+ I + +LL
Sbjct 1367 IDNINNTLVNLEWLNRIETYVKWPWYVWL--LIGLVVIFCIPLLLF 1410
>sp|P36300|SPIKE_CVCAI Spike glycoprotein OS=Canine coronavirus
(strain Insavc-1) OX=36391 GN=S PE=1 SV=1
Length=1451
Score = 823 bits (2127), Expect = 0.0, Method: Composition-based stats.
Identities = 227/797 (28%), Positives = 363/797 (46%), Gaps = 106/797 (13%)
Query 489 IGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFNGLTGTGVLTPSSKRFQP- 547
+ Y + ++ P+ G + L + C ++N G TG G++ ++
Sbjct 654 VFGSLYVIYEEGDNIVGVPSDNSGLHDLSVLHLDSCTDYNIYGRTGVGIIRKTNSTLLSG 713
Query 548 --FQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTD 605
+ D+ F ++ + ++PC + + G + ++ + + T
Sbjct 714 LYYTSLSGDLLGF----KNVSDGVVYSVTPCDVSAQAAVIDGAIVGAMTSINSELLGLTH 769
Query 606 VSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPI---GAGICASYHT 662
+T TP + YS N G I D +C+ I G+C +
Sbjct 770 WTT-------TPNFYYYSIYNYTNVMNRGTAI-----DNDIDCEPIITYSNIGVCKNGAL 817
Query 663 VSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNM 722
V + T S G I+ N + IPTNF+IS+ E + V S+DC
Sbjct 818 V----------FINVTHSDGDVQPISTGN--VTIPTNFTISVQVEYIQVYTTPVSIDCAR 865
Query 723 YICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVF------------------ 764
Y+C + C LL QY S C + +AL+ A ++ +
Sbjct 866 YVCNGNPRCNKLLTQYVSACQTIEQALAMGARLENMEIDSMLFVSENALKLASVEAFNST 925
Query 765 ---AQVKQMYKTPTLKYFGGFNFSQILPDPLKPT-KRSFIEDLLFNKVTLADAGFMKQ-Y 819
+ + + + GG ILP RS IEDLLF+KV + G + + Y
Sbjct 926 ENLDPIYKEWPNIGGSWLGG--LKDILPSHNSKRKYRSAIEDLLFDKVVTSGLGTVDEDY 983
Query 820 GECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIP 879
G + DL+CA+ +NG+ VLP + DD + YTA+L G + G A+ IP
Sbjct 984 KRSAGGYDIADLVCARYYNGIMVLPGVANDDKMTMYTASLTGGITLGALS---GGAVAIP 1040
Query 880 FAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQE--------------SLTTTST 925
FA+ + R N + + +VL +NQ+ +AN FN+AI I + L T +
Sbjct 1041 FAVAVQARLNYVALQTDVLNKNQQILANAFNQAIGNITQAFGKVNDAIHQTSKGLATVAK 1100
Query 926 ALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQS 985
AL K+QDVVN QAL+ L QL +NF AISS ++DI +RLD++ A+ Q+DRLITGRL +
Sbjct 1101 ALAKVQDVVNTQGQALSHLTVQLQNNFQAISSSISDIYNRLDELSADAQVDRLITGRLTA 1160
Query 986 LQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFL 1045
L +V+Q L R AE+RAS LA K++ECV QS+R FCG G HL S AAP+G++F
Sbjct 1161 LNAFVSQTLTRQAEVRASRQLAKDKVNECVRSQSQRFGFCGNGTHLFSLANAAPNGMIFF 1220
Query 1046 HVTYVPSQERNFTTAPAICH-EGKAYFP------REGVFVFNGTSWFITQRNFFSPQIIT 1098
H +P+ T IC +G F + +F +++T R + P++ T
Sbjct 1221 HTVLLPTAYETVTAWSGICASDGSRTFGLVVEDVQLTLFRNLDEKFYLTPRTMYQPRVAT 1280
Query 1099 TDNTFVSGNCDVVIGIINNTVYDPLQPEL----DSFKEELDKYFKNHTSPDVDLGDISGI 1154
+ + CDV+ + P+ + ++ L+ + N T P++ L
Sbjct 1281 SSDFVQIEGCDVLFVNGTVIELPSIIPDYIDINQTVQDILENFRPNWTVPELPL---DIF 1337
Query 1155 NASVVNIQKEIDRLN--------------EVAKNLNESLIDLQELGKYEQYIKWPWYVWL 1200
+A+ +N+ EI+ L + N+N +L++L+ L + E Y+KWPWYVWL
Sbjct 1338 HATYLNLTGEINDLEFRSEKLHNTTVELAILIDNINNTLVNLEWLNRIETYVKWPWYVWL 1397
Query 1201 GFIAGLIAIVMVTILLC 1217
+ GL+ I + ILL
Sbjct 1398 --LIGLVVIFCIPILLF 1412
>sp|P15423|SPIKE_CVH22 Spike glycoprotein OS=Human coronavirus
229E OX=11137 GN=S PE=1 SV=1
Length=1173
Score = 757 bits (1954), Expect = 0.0, Method: Composition-based stats.
Identities = 289/1231 (23%), Positives = 475/1231 (39%), Gaps = 165/1231 (13%)
Query 89 FAATEKSNVVRGWVFGSTM--NNKSQSVIIINNSTNVVIRACNFELCDNPFFA--VSKPM 144
FA + + F + N S V + S ++ C + + F V
Sbjct 40 FAVESGGYIPSDFAFNNWFLLTNTSSVVDGVVRSFQPLLLNCLWSVSGLRFTTGFVYFNG 99
Query 145 GTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFV-FKNKDGFLYVYKGYQPI 203
+ F + + F ++ + FK V F + L + P
Sbjct 100 TGRGDCKGFSSDVLSDVIRYNLNFEENLRRGTILFKTSYGVVVFYCTNNTLVSGDAHIPF 159
Query 204 DVVRDLPSGF--------NTLKPIFKLP-------------LGINITNFRAILTAFSPAQ 242
V F T + LP IN + + +
Sbjct 160 GTVLGNFYCFVNTTIGNETTSAFVGALPKTVREFVISRTGHFYINGYRYFTLGNVEAVNF 219
Query 243 DIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQT 302
++ + L +L +I + + C + + L+C SF++ G Y T
Sbjct 220 NVTTAETTDFCTVALASYADVLVNVSQTSIANIIYC-NSVINRLRCDQLSFDVPDGFYST 278
Query 303 SNFRVVPSGDVVRFPNITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFS 362
S P V S+ + + D+
Sbjct 279 S--------------------PIQSVELPVSIVSLPVYHKHTFIVLYVDFKP-----QSG 313
Query 363 TFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLA 422
KC+ + N+ +F + + + Y V
Sbjct 314 GGKCFNCYPAGV------NITLANF---NETKGPLCVDTSHFTTKY-----VAVYANVGR 359
Query 423 WNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYG 482
W+ ++ +++ G + +DI C P+
Sbjct 360 WSASINTGNCPFSFGKVNNFVKFGSVCFSLKDIPG---------------GCAMPIVANW 404
Query 483 FYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFNGLTGTGVLTPSS 542
Y+ Y + P V G ++ ++C +N ++G GV+ S+
Sbjct 405 AYSKYYTIGSLYVSWSDGDGITGVPQPVEGVSSFMNVTLDKCTKYNIYDVSGVGVIRVSN 464
Query 543 KRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVN 602
F + S +D I I+PC+ V+ + ++ +
Sbjct 465 DTFLNGITYT-STSGNLLGFKDVTKGTIYSITPCNPPDQLVVYQQAVVGAMLSENFTSYG 523
Query 603 CTDVSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHT 662
++V +L + + N +Y G+CA
Sbjct 524 FSNVV------ELPKFFYASNGTYNCTDAVL-----------TYS-----SFGVCADGSI 561
Query 663 VSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNM 722
+++ ++ DS A ++IP+N++ S+ E + ++ VDC+
Sbjct 562 IAVQPR-----------NVSYDSVSAIVTANLSIPSNWTTSVQVEYLQITSTPIVVDCST 610
Query 723 YICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGF 782
Y+C + C LL QY S C + AL A + + E+ K+ + + FG +
Sbjct 611 YVCNGNVRCVELLKQYTSACKTIEDALRNSARLESADVSEMLTFDKKAFTLANVSSFGDY 670
Query 783 NFSQILPD-PLKPTK---RSFIEDLLFNKVTLADAGFMKQ-YGECLGDINARDLICAQKF 837
N S ++P P ++ RS IED+LF+K+ + G + Y +C ++ DL CAQ +
Sbjct 671 NLSSVIPSLPTSGSRVAGRSAIEDILFSKLVTSGLGTVDADYKKCTKGLSIADLACAQYY 730
Query 838 NGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNV 897
NG+ VLP + + +A YT +L+ G A G T +A+ IPF++ + R N + + +V
Sbjct 731 NGIMVLPGVADAERMAMYTGSLIGGIALGGLT----SAVSIPFSLAIQARLNYVALQTDV 786
Query 898 LYENQKQIANQFNKA--------------ISQIQESLTTTSTALGKLQDVVNQNAQALNT 943
L ENQK +A FNKA I+Q ++L T +TAL K+QDVVNQ +LN
Sbjct 787 LQENQKILAASFNKAMTNIVDAFTGVNDAITQTSQALQTVATALNKIQDVVNQQGNSLNH 846
Query 944 LVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRAS 1003
L QL NF AISS + I RLD ++A+ Q+DRLITGRL +L +V+ L + E+RAS
Sbjct 847 LTSQLRQNFQAISSSIQAIYDRLDTIQADQQVDRLITGRLAALNVFVSHTLTKYTEVRAS 906
Query 1004 ANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAI 1063
LA K++ECV QSKR FCG G H+ S AAP G+VFLH +P+Q ++ +
Sbjct 907 RQLAQQKVNECVKSQSKRYGFCGNGTHIFSIVNAAPEGLVFLHTVLLPTQYKDVEAWSGL 966
Query 1064 CHEG-KAYFPREGVFV--FNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVY 1120
C +G Y R+ G + IT R F P+I T + NC+V I+ +
Sbjct 967 CVDGTNGYVLRQPNLALYKEGNYYRITSRIMFEPRIPTMADFVQIENCNVTFVNISRSEL 1026
Query 1121 DPLQPELDSFK---EELDKYFKNHTSPDVDLGDISGINASVVNIQKEI------------ 1165
+ PE +EL N+T PD+ + N +++N+ EI
Sbjct 1027 QTIVPEYIDVNKTLQELSYKLPNYTVPDL---VVEQYNQTILNLTSEISTLENKSAELNY 1083
Query 1166 --DRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCC 1223
+L + N+N +L+DL+ L + E YIKWPW+VWL LI +V + +L CC T CC
Sbjct 1084 TVQKLQTLIDNINSTLVDLKWLNRVETYIKWPWWVWLCISVVLIFVVSMLLLCCCSTGCC 1143
Query 1224 SCLKGA-CSCGSCCKFDEDDSEPVLKGVKLH 1253
S CC E P K+H
Sbjct 1144 GFFSCFASSIRGCC---ESTKLPYYDVEKIH 1171
>sp|Q6Q1S2|SPIKE_CVHNL Spike glycoprotein OS=Human coronavirus
NL63 OX=277944 GN=S PE=1 SV=1
Length=1356
Score = 745 bits (1922), Expect = 0.0, Method: Composition-based stats.
Identities = 232/889 (26%), Positives = 377/889 (42%), Gaps = 80/889 (9%)
Query 407 DYNYKLPDDFMGCV------LAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPF 460
N L + CV + + + + S G+ ++ F + + F
Sbjct 504 QVNISLNGNTSVCVRTSHFSIRYIYNRVKSGSPGDSSWHIYLKSGTCPFSFSKLNNFQKF 563
Query 461 SPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLI 520
+C +PL YT+ I Y + P V G + ++L+
Sbjct 564 KTICFSTVEVPGSCNFPLEATWHYTSYTIVGALYVTWSEGNSITGVPYPVSGIREFSNLV 623
Query 521 KNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGG 580
N C +N GTG++ S++ + + ++ T I ++PC+
Sbjct 624 LNNCTKYNIYDYVGTGIIRSSNQSLAGGITYVSNS-GNLLGFKNVSTGNIFIVTPCNQPD 682
Query 581 VSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIGAE 640
+ + + AV ++ QL + + + GNN C
Sbjct 683 QVAVYQQSIIGAMTAVNESRYGLQNLL------QLPNFYYVSNGGNN-------CTTAV- 728
Query 641 HVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNF 700
+Y GICA + + S + A ++IP+N+
Sbjct 729 ---MTYS-----NFGICADGSLIPVRPRNSS-----------DNGISAIITANLSIPSNW 769
Query 701 SISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNT 760
+ S+ E + ++ VDC Y+C + C NLL QY S C + AL A + +
Sbjct 770 TTSVQVEYLQITSTPIVVDCATYVCNGNPRCKNLLKQYTSACKTIEDALRLSAHLETNDV 829
Query 761 REVFAQVKQMYKTPTLKYFGGFNFSQILPD----PLKPTKRSFIEDLLFNKVTLADAGFM 816
+ + + FG +N S +LP + RS +EDLLF+KV + G +
Sbjct 830 SSMLTFDSNAFSLANVTSFGDYNLSSVLPQRNIRSSRIAGRSALEDLLFSKVVTSGLGTV 889
Query 817 K-QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAA 875
Y C ++ DL CAQ +NG+ VLP + + +A YT +L+ G G T +A
Sbjct 890 DVDYKSCTKGLSIADLACAQYYNGIMVLPGVADAERMAMYTGSLIGGMVLGGLT----SA 945
Query 876 LQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQI--------------QESLT 921
IPF++ + R N + + +VL ENQK +A FNKAI+ I E++
Sbjct 946 AAIPFSLALQARLNYVALQTDVLQENQKILAASFNKAINNIVASFSSVNDAITQTAEAIH 1005
Query 922 TTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITG 981
T + AL K+QDVVNQ ALN L QL NF AIS+ + I RLD ++A+ Q+DRLITG
Sbjct 1006 TVTIALNKIQDVVNQQGSALNHLTSQLRHNFQAISNSIQAIYDRLDSIQADQQVDRLITG 1065
Query 982 RLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHG 1041
RL +L +V+Q L + E+R S LA K++ECV QS R FCG G H+ S +AP G
Sbjct 1066 RLAALNAFVSQVLNKYTEVRGSRRLAQQKINECVKSQSNRYGFCGNGTHIFSIVNSAPDG 1125
Query 1042 VVFLHVTYVPSQERNFTTAPAICHEG-KAYFPREGVFVF--NGTSWFITQRNFFSPQIIT 1098
++FLH +P+ +N IC +G Y R+ V + + +T R F P++
Sbjct 1126 LLFLHTVLLPTDYKNVKAWSGICVDGIYGYVLRQPNLVLYSDNGVFRVTSRVMFQPRLPV 1185
Query 1099 TDNTFVSGNCDVVIGIINNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASV 1158
+ NC+V I+ + P+ + L ++ +N D++ N +
Sbjct 1186 LSDFVQIYNCNVTFVNISRVELHTVIPDYVDVNKTLQEFAQNLPKYVKPNFDLTPFNLTY 1245
Query 1159 VNIQKEID--------------RLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIA 1204
+N+ E+ L + +N + +DL+ L ++E YIKWPW+VWL
Sbjct 1246 LNLSSELKQLEAKTASLFQTTVELQGLIDQINSTYVDLKLLNRFENYIKWPWWVWLIISV 1305
Query 1205 GLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDEDDSEPVLKGVKLH 1253
+ ++ + + C T CC C S C P + K+H
Sbjct 1306 VFVVLLSLLVFCCLSTGCCGCCNCLTSSMRGCCDCGSTKLPYYEFEKVH 1354
>sp|Q0Q466|SPIKE_BC512 Spike glycoprotein OS=Bat coronavirus 512/2005
OX=693999 GN=S PE=3 SV=1
Length=1371
Score = 697 bits (1799), Expect = 0.0, Method: Composition-based stats.
Identities = 285/1200 (24%), Positives = 457/1200 (38%), Gaps = 178/1200 (15%)
Query 78 NPVIPFKDGIYFAATEKSNVVRGW--VFGSTMNNKSQSVIIINNSTNVVIRACNFELCDN 135
P+ P+ + +F T S +V+G VF + N ++ + + +
Sbjct 249 PPIFPYNN--WFLLTNTSTLVQGVTRVFQPFLVN---CLVALPKLQGLTTTLSFDSPLNV 303
Query 136 PFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEK-------SGNFKHLREFVFK 188
P F+ + G+ + N + + A +L+ + S N
Sbjct 304 PGFSCNGANGSSSAEAFRFNVNDTKLFVGAGAVTLNTVDGVNVSIVCSNNATQPTRSNNL 363
Query 189 NKDGFLYVYK-GYQPIDVVRDLPSGFNTLKPIFKLPLGINI-----TNFRAILTAFSPAQ 242
+D Y + + S F + F + N+ R
Sbjct 364 QEDLPYYCFTNTSSGTNHTVKFLSVFPPIIREFVITKYGNVYVNGYIYLRTRPLTAVHLN 423
Query 243 DIWGTSAAA-YFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQ 301
+ A ++ T +L N I + C P +KCS SFE++ G Y
Sbjct 424 ASSHSQDVAGFWTIAATNFTDVLVEVNNTGIQRLLYC-DTPENSVKCSQLSFELEDGFYS 482
Query 302 TSNFRVVPSGDVVRFPNITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFF 361
+ ++ V + +
Sbjct 483 MT------------------------------------------ADNVYAVTKPHTFVTL 500
Query 362 STFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVL 421
TF +G + F + Y F G V G + + L DFM
Sbjct 501 PTFNDHGFVNVTVGGN-FDSSYPPKFTANGTLVNN---GTVVCVTSNQFTLRHDFM---- 552
Query 422 AWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPAL-NCYWPLND 480
+ + + + PF R+ N + G+ C + + L
Sbjct 553 ----------VGYSADMRKGIFEYSSTCPFNRETINN-YLTFGRICFSTSPADGACELKY 601
Query 481 YGFYT---TTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFNGLTGTGV 537
Y + T + + Y + P + G ++L + C + G G GV
Sbjct 602 YVWNTIGAVSHLAGTLYVQHTKGDIITGTPKPLQGLNDISELHLDTCTTYTIYGFRGDGV 661
Query 538 LTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVL 597
+ +++ F + + + ++ T +I ++PC
Sbjct 662 IRLTNQTFLSGVYYTSES-GQLLAFKNVTTGQIYSVTPCQLVQQVAFVEDRIVG------ 714
Query 598 YQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIP----IG 653
I + T + T + H + + C P
Sbjct 715 -----------VISSANNTGFFNSTRTFPGFY----------YHSNDTTNCTSPRLVYSN 753
Query 654 AGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSM 713
G+C S L +Q I+IPTNF++S+ TE + +
Sbjct 754 IGVCTSGAIGLLSPKAAQ------------PQVQPMFQGNISIPTNFTMSVRTEYIQLFN 801
Query 714 AKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKT 773
SVDC MY+C + C LL QY S C + AL A + + + K
Sbjct 802 KPVSVDCAMYVCNGNDRCKQLLSQYTSACKNIESALQLSARLESMEVNSMLTVSDEALKL 861
Query 774 PTLKYF--GGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQ-YGECLGDINARD 830
T+ F GG+NF+ ILP P RS IED+LF+KV + G + + Y C ++ D
Sbjct 862 ATISQFPGGGYNFTNILP--ANPGARSVIEDILFDKVVTSGLGTVDEDYKRCSNGLSIAD 919
Query 831 LICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNG 890
L CAQ +NG+ VLP + + + Y+A+LV G G T +A +PF+ + R N
Sbjct 920 LACAQHYNGIMVLPGVADWEKVHMYSASLVGGMTLGGIT----SAAALPFSYAVQARLNY 975
Query 891 IGVTQNVLYENQKQIANQFNKAISQIQ--------------ESLTTTSTALGKLQDVVNQ 936
+ + +VL NQ+ +AN FN AIS I L T + AL K+QDVVN
Sbjct 976 VALQTDVLQRNQQMLANSFNSAISNITLAFESVNNAIYQTSAGLNTVAEALSKVQDVVNG 1035
Query 937 NAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIR 996
AL+ L QL +NF AIS+ + DI SRLD++ A+ Q+DRLITGRL +L +V Q L +
Sbjct 1036 QGNALSQLTVQLQNNFQAISNSIGDIYSRLDQITADAQVDRLITGRLAALNAFVAQSLTK 1095
Query 997 AAEIRASANLAATKMSECVLGQSKRVDFCGK-GYHLMSFPQAAPHGVVFLHVTYVPSQER 1055
AE++AS LA K++ECV QS R FCG G H+ S QAAP G++FLH VP+
Sbjct 1096 YAEVQASRTLAKQKVNECVKSQSPRYGFCGDEGEHIFSLTQAAPQGLMFLHTVLVPNGFI 1155
Query 1056 NFTTAPAICHEGK-AYFPREGVFVF--NGTSWFITQRNFFSPQIITTDNTFVSGNCDVVI 1112
N T +C + A R+ FV ++ ++ R F P+ + C +
Sbjct 1156 NVTAVTGLCVDETIAMTLRQSGFVLFVQNGNYLVSPRKMFEPRRPEVADFVQVKTCTISY 1215
Query 1113 GIINNTVYDPLQPELDSFK---EELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLN 1169
I N + P+ +E+ N+T PD+ L N + +N+ EI L
Sbjct 1216 VNITNNQLPDIIPDYVDVNKTIDEILANLPNNTVPDLPL---DVFNQTFLNLTGEIADLE 1272
Query 1170 --------------EVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTIL 1215
++ +N+N +L+DLQ L + E +IKWPWYVWL + LI +V + +
Sbjct 1273 ARSESLKNTSEELRQLIQNINNTLVDLQWLNRVETFIKWPWYVWLAIVIALILVVSLLVF 1332
>sp|Q91AV1|SPIKE_PEDV7 Spike glycoprotein OS=Porcine epidemic
diarrhea virus (strain CV777) OX=229032 GN=S PE=1 SV=1
Length=1383
Score = 681 bits (1757), Expect = 0.0, Method: Composition-based stats.
Identities = 254/991 (26%), Positives = 400/991 (40%), Gaps = 163/991 (16%)
Query 280 QNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFNATKFPSVYA 339
+P+++LKCS +F++D G Y S+ NL + + PS
Sbjct 462 DDPVSQLKCSQVAFDLDDGFYPISS---------------RNLLSHEQPISFVTLPS--- 503
Query 340 WERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAP 399
+ N T + F G+S+ L S+ + F
Sbjct 504 ----------FNDHSFVNITVSAAFG--GLSSANLVA---SDTTINGFS----------- 537
Query 400 GQTGVIADYNYKLPDDFMGCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVP 459
++ + L +N T +Y Y + + +
Sbjct 538 ---------SFCVDTRQFTITLFYN-------VTNSYGYVSKSQDSNCPFTLQSVNDYLS 581
Query 460 FSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDL 519
FS + A C L Y + + Y + P + G + +
Sbjct 582 FSKFCVSTSLLAGACTIDLFGYPAFGSGVKLTSLYFQFTKGELITGTPKPLEGITDVSFM 641
Query 520 IKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFG 579
+ C + G G G++T ++ + D + ++ + + ++PCSF
Sbjct 642 TLDVCTKYTIYGFKGEGIITLTNSSILAGVYYTSDS-GQLLAFKNVTSGAVYSVTPCSFS 700
Query 580 GVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIGA 639
+ ++ ST + +L + + G+N
Sbjct 701 EQAAYVNDDIVGVISSL--------SNSTFNNTRELPGFFYHSNDGSN------------ 740
Query 640 EHVDTSYECDIPI----GAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIA 695
C P+ G+C S + Q I I+
Sbjct 741 --------CTEPVLVYSNIGVCKSGSIGYVPSQYGQVKIAP------------TVTGNIS 780
Query 696 IPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAE 755
IPTNFS+SI TE + + SVDC Y+C ++ C LL QY + C + AL A
Sbjct 781 IPTNFSMSIRTEYLQLYNTPVSVDCATYVCNGNSRCKQLLTQYTAACKTIESALQLSARL 840
Query 756 QDRNTREVFAQVKQMYKTPTLKYFGG--FNFSQILP----DPLKPT---KRSFIEDLLFN 806
+ + ++ + T+ F G +NF+ +L DP KRS IEDLLFN
Sbjct 841 ESVEVNSMLTISEEALQLATISSFNGDGYNFTNVLGASVYDPASGRVVQKRSVIEDLLFN 900
Query 807 KVTLADAGFMKQ-YGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTAT 865
KV G + + Y C + DL+CAQ ++G+ VLP ++ + + Y+A+L+ G A
Sbjct 901 KVVTNGLGTVDEDYKRCSNGRSVADLVCAQYYSGVMVLPGVVDAEKLHMYSASLIGGMAL 960
Query 866 AGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ-------- 917
G T A +PF+ + R N + + +VL NQ+ +A FN AI I
Sbjct 961 GGITA----AAALPFSYAVQARLNYLALQTDVLQRNQQLLAESFNSAIGNITSAFESVKE 1016
Query 918 ------ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA 971
+ L T + AL K+Q+VVN ALN L QL NF AISS ++DI SRLD + A
Sbjct 1017 AISQTSKGLNTVAHALTKVQEVVNSQGSALNQLTVQLQHNFQAISSSIDDIYSRLDILSA 1076
Query 972 EVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFC-GKGYH 1030
+VQ+DRLITGRL +L +V Q L + E++AS LA K++ECV QS+R FC G G H
Sbjct 1077 DVQVDRLITGRLSALNAFVAQTLTKYTEVQASRKLAQQKVNECVKSQSQRYGFCGGDGEH 1136
Query 1031 LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGK-AYFPREGVFVF--------NG 1081
+ S QAAP G++FLH VP N +C G+ A RE V
Sbjct 1137 IFSLVQAAPQGLLFLHTVLVPGDFVNVLAIAGLCVNGEIALTLREPGLVLFTHELQTYTA 1196
Query 1082 TSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPLQPELDSFK---EELDKYF 1138
T +F++ R F P+ T + +C V + + + P+ +E+
Sbjct 1197 TEYFVSSRRMFEPRKPTVSDFVQIESCVVTYVNLTSDQLPDVIPDYIDVNKTLDEILASL 1256
Query 1139 KNHTSPDVDLGDISGINASVVNIQKEIDRLNE--------------VAKNLNESLIDLQE 1184
N T P + L NA+ +N+ EI L + + N+N +L+DL+
Sbjct 1257 PNRTGPSLPL---DVFNATYLNLTGEIADLEQRSESLRNTTEELRSLINNINNTLVDLEW 1313
Query 1185 LGKYEQYIKWPWYVWLGFIAGLIAIVMVTIL 1215
L + E YIKWPW+VWL + LI +V + +
Sbjct 1314 LNRVETYIKWPWWVWLIIVIVLIFVVSLLVF 1344
>sp|P12651|SPIKE_IBVM Spike glycoprotein OS=Avian infectious bronchitis
virus (strain M41) OX=11127 GN=S PE=3 SV=1
Length=1162
Score = 678 bits (1748), Expect = 0.0, Method: Composition-based stats.
Identities = 277/1135 (24%), Positives = 440/1135 (39%), Gaps = 112/1135 (10%)
Query 141 SKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGY 200
S + + F+ T +++ + D +G + V K+G L+
Sbjct 88 SGMAWSSSQFCTAHCNFSDTTVFVTHCYKYDGCPITGMLQKNFLRVSAMKNGQLFYNLTV 147
Query 201 QPIDVVRDLPSGFNTLKPIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPT 260
F + + + L ++ T + A + + +
Sbjct 148 SVAKYPTFKS--FQCVNNLTSVYLNGDLVYTSNETTDVTSAGVYFKAGGPITY--KVMRK 203
Query 261 TFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQ-TSNFRVVPSGDVVRFPNI 319
L Y NGT D + C +P L C + G Y ++ V V R
Sbjct 204 VKALAYFVNGTAQDVILCDGSPRGLLACQYNTGNFSDGFYPFINSSLVKQKFIVYR---- 259
Query 320 TNLCPFGEVFNATKFPSVYAWERKKISN---CVADYSVLYNSTFFSTFKCYGVSATKLND 376
+ + N + S + N + T + + +
Sbjct 260 -----------ENSVNTTFTLHNFTFHNETGANPNPSGVQNILTYQT----QTAQSGYYN 304
Query 377 LCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDATSTGNY 436
FS + SFV K + N++L G L +N+ ++ Y
Sbjct 305 FNFS--FLSSFVYKESNFMY-----GSYHPSCNFRLETINNG--LWFNSLSVSI----AY 351
Query 437 NYKYRYLRHGKLRPFERDISNVPFSPDG-KPCTPPALNCYWPLNDYGFYTTTGIGYQPYR 495
+ R +S G C + G
Sbjct 352 GPLQGGCKQSVFS--GRATCCYAYSYGGPSLCKGVYSGELDLNFECGLLVYVTKSGG--- 406
Query 496 VVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFG--- 552
S V ++ N CV++N G TG G +T + +
Sbjct 407 ----SRIQTATEPPVITRHNYNNITLNTCVDYNIYGRTGQGFITNVTDSAVSYNYLADAG 462
Query 553 ---RDVSDFTDSVRDPKTS--EILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVS 607
D S D ++PC + G V +L S
Sbjct 463 LAILDTSGSIDIFVVQGEYGLTYYKVNPCEDVNQQFVVSG---GKLVGIL--------TS 511
Query 608 TAIHADQLTPAWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLR 667
QL N + + + C C +
Sbjct 512 RNETGSQLLENQFYIKITNGTRRFRRSITENVAN------CPYVSYGKFCI--------K 557
Query 668 STSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGD 727
+ + + + + IP +F++++T E + M K ++C Y+CG+
Sbjct 558 PDGSIATIVPKQLEQFVAPLLNVTENVLIPNSFNLTVTDEYIQTRMDKVQINCLQYVCGN 617
Query 728 STECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQ-MYKTPTLKYF--GGFNF 784
S +C +L QYG C + ++ I ++D ++ K + TP L G FN
Sbjct 618 SLDCRDLFQQYGPVCDNILSVVNSIGQKEDMELLNFYSSTKPAGFNTPFLSNVSTGEFNI 677
Query 785 SQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDIN--ARDLICAQKFNGLTV 842
S +L P P +RSFIEDLLF V Y C +DL CA+++NGL V
Sbjct 678 SLLLTTPSSPRRRSFIEDLLFTSVESVGLPTDDAYKNCTAGPLGFLKDLACAREYNGLLV 737
Query 843 LPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQ 902
LPP++T +M YT++LV+ A G T A IPFA Q+ R N +G+TQ++L +NQ
Sbjct 738 LPPIITAEMQTLYTSSLVASMAFGGITA----AGAIPFATQLQARINHLGITQSLLLKNQ 793
Query 903 KQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDI 962
++IA FNKAI ++QE +TS AL ++QDVVN+ + L + L+ NFGAISSV+ +I
Sbjct 794 EKIAASFNKAIGRMQEGFRSTSLALQQIQDVVNKQSAILTETMASLNKNFGAISSVIQEI 853
Query 963 LSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRV 1022
+LD ++A Q+DRLITGRL SL + + + LA K++ECV QS R
Sbjct 854 YQQLDAIQANAQVDRLITGRLSSLSVLASAKQAEHIRVSQQRELATQKINECVKSQSIRY 913
Query 1023 DFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICH-----EGKAYFPR--EG 1075
FCG G H+++ PQ AP+G+VF+H +Y P N T C A P G
Sbjct 914 SFCGNGRHVLTIPQNAPNGIVFIHFSYTPDSFVNVTAIVGFCVKPANASQYAIVPANGRG 973
Query 1076 VFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDP-LQPELDSFKEEL 1134
+F+ S++IT R+ + P+ IT + +C +N TV + + F +EL
Sbjct 974 IFIQVNGSYYITARDMYMPRAITAGDIVTLTSCQANYVSVNKTVITTFVDNDDFDFNDEL 1033
Query 1135 DKYFKN--HTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYI 1192
K++ + H PD D + + +++I EIDR+ V + LN+SLIDL++L + YI
Sbjct 1034 SKWWNDTKHELPDFDKFNYT---VPILDIDSEIDRIQGVIQGLNDSLIDLEKLSILKTYI 1090
Query 1193 KWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKG-------ACSCGSCCKFDE 1240
KWPWYVWL I +++ + MT CC C G CG +
Sbjct 1091 KWPWYVWLAIAFATIIFILILGWVFFMTGCCGCCCGCFGIMPLMSKCGKKSSYYT 1145
>sp|P05135|SPIKE_IBV6 Spike glycoprotein OS=Avian infectious bronchitis
virus (strain 6/82) OX=11121 GN=S PE=3 SV=1
Length=1163
Score = 677 bits (1746), Expect = 0.0, Method: Composition-based stats.
Identities = 262/1013 (26%), Positives = 406/1013 (40%), Gaps = 110/1013 (11%)
Query 264 LKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQ-TSNFRVVPSGDVVRFPNITNL 322
L Y NGT D + C +P L C + G Y T++ V V R
Sbjct 208 LAYFVNGTAQDVILCDGSPTGLLACQYNTGNFSDGFYPFTNSSLVKEKFIVYR------- 260
Query 323 CPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNV 382
+ + SN V++ + + +
Sbjct 261 --------ESSVNTTLELTNFTFSN-VSNATPNTGGVQTIQL--------------YQTI 297
Query 383 YADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDATSTGNYNYKYRY 442
A S ++ + YK D G + + N +
Sbjct 298 TAQSGYYNL---------NFSFLSSFIYKASDYMYGS--YHPSCKFRLETINNGLWFNSL 346
Query 443 LRHGKLRPFERDISNVPFSPDGKPCTPPALNC--YWPLNDYGFYTTT---GIGYQPYRVV 497
P + F+ C + N G T + G+ +
Sbjct 347 SVSLGYGPIQGGCKQSVFANRATCCYAYSYNGPSLCKGVYRGELTKSFECGLLVFVTKTD 406
Query 498 VLSFELLNAPATVCGPKLSTDLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFG----- 552
+ N P T+ ++ ++CV +N G G G +T + +
Sbjct 407 GSRIQTRNEPFTLTQ-HNYNNITLDRCVEYNIYGRVGQGFITNVTNYAINYNYLADGGMA 465
Query 553 -RDVSDFTDSVRDPKTS--EILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTA 609
D S D ++PC + G V +L S
Sbjct 466 ILDTSGAIDIFVVQGEYGLNYYKVNPCEDVNQQFVVSG---GKLVGIL--------TSRN 514
Query 610 IHADQLTPAWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRST 669
Q N +++ + C C +
Sbjct 515 ETGSQPLENQFYIKIINGTRRSRRSITGNVTN------CPYVTYGKFCI--------KPD 560
Query 670 SQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDST 729
S + + + + IP +F++++T E + M K ++C Y+CG+S
Sbjct 561 GSISTIVPKELEHFVAPLLNVTENVLIPDSFNLTVTDEYIQTRMDKVQINCLQYVCGNSL 620
Query 730 ECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQ-MYKTPTLKYF--GGFNFSQ 786
EC L QYG C + ++ + ++D ++ K + TP L G FN S
Sbjct 621 ECRKLFQQYGPVCDNILSVVNSVGQKEDMELLYFYSSTKPSGFNTPVLSNVSTGEFNISL 680
Query 787 ILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDIN--ARDLICAQKFNGLTVLP 844
+L P + RSFIEDLLF V Y +C +DL CA+++NGL VLP
Sbjct 681 LLTPPSSASGRSFIEDLLFTSVESVGLPTDDAYKKCTAGPLGFLKDLACAREYNGLLVLP 740
Query 845 PLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQ 904
P++T +M YT++LV+ A G T +A IPFA Q+ R N +G+TQ++L++NQ++
Sbjct 741 PIITAEMQTLYTSSLVASMAFGGIT----SAGAIPFATQLQARINHLGITQSLLFKNQEK 796
Query 905 IANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILS 964
IA FNKAI +QE +TS AL ++QDVVN+ + L + L+ NFGAISSVL DI
Sbjct 797 IAASFNKAIGHMQEGFRSTSLALQQIQDVVNKQSSILTETMASLNKNFGAISSVLQDIYQ 856
Query 965 RLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDF 1024
+LD ++A+ Q+DR+ITGRL SL + + + LA K++ECV QS R F
Sbjct 857 QLDSIQADAQVDRIITGRLSSLSVLASAKQAEYYRVSQQRELATQKINECVKSQSIRYSF 916
Query 1025 CGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEG-----KAYFPR--EGVF 1077
CG G H+++ PQ AP+G+VF+H TY P N T C A P G+F
Sbjct 917 CGNGRHVLTIPQNAPNGIVFIHFTYTPESFVNVTAIVGFCVNPANASQYAIVPANGRGIF 976
Query 1078 VFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDP-LQPELDSFKEELDK 1136
+ S++IT R+ + P+ IT + +C +N TV + + F +EL K
Sbjct 977 IQVNGSYYITARDMYMPRDITAGDIVTLTSCQANYVSVNKTVITTFVDNDDFDFDDELSK 1036
Query 1137 YFKN--HTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKW 1194
++ + H PD D + + +++I EIDR+ V + LN+SLIDL+ L + YIKW
Sbjct 1037 WWNDTKHELPDFDEFNYT---VPILDIGSEIDRIQGVIQGLNDSLIDLETLSILKTYIKW 1093
Query 1195 PWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKG-------ACSCGSCCKFDE 1240
PWYVWL I ++V + MT CC C G CG +
Sbjct 1094 PWYVWLAIAFLTIIFILVLCWIFFMTGCCGCCCGCFGIIPLMSKCGKKSSYYT 1146
>sp|P12650|SPIKE_IBVK Spike glycoprotein OS=Avian infectious bronchitis
virus (strain KB8523) OX=11126 GN=S PE=3 SV=1
Length=1162
Score = 675 bits (1741), Expect = 0.0, Method: Composition-based stats.
Identities = 264/1041 (25%), Positives = 413/1041 (40%), Gaps = 102/1041 (10%)
Query 234 ILTAFSPAQDIWGTSAAAYFVGYLKPTTF----MLKYDENGTITDAVDCSQNPLAELKCS 289
++ + D+ VG + L Y NGT D + C +P L C
Sbjct 173 LVYTSNETTDVTSAGVYFKAVGPITYKVMREVRALAYFVNGTAQDVILCDGSPRGLLACQ 232
Query 290 VKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFNATKFPSVYAWERKKISNCV 349
+ G Y +N +V +V N N +++ + +
Sbjct 233 YNTGNFSDGFYPFTNSSLVKQKFIVYRENSVN-----------TTFTLHNFTFHNETGAN 281
Query 350 ADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYN 409
+ S + N + T + + + FS + + + P + + N
Sbjct 282 PNPSGVQNIQTYQT----QTAQSGYYNFNFSFLSSFVYKESNFMYGSYHPSCSFRLETIN 337
Query 410 YKLPDDFMGCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTP 469
L + + +A+ + + P C
Sbjct 338 NGLWFNSLSVSIAYGPLQGGCKQSVFSGRATCCYAYSYGGPLLCKGVYSGELDHNFECGL 397
Query 470 PALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNF 529
+ T + Q ++ N CV++N
Sbjct 398 LVYVTKSGGSRIQTATEPPVITQ---------------------HNYNNITLNTCVDYNI 436
Query 530 NGLTGTGVLTPSSKRFQPFQQFG------RDVSDFTDSVRDPKTS--EILDISPCSFGGV 581
G G G +T + + D S D ++PC
Sbjct 437 YGRIGQGFITNVTDSAVSYNYLADAGLAILDTSGSIDIFVVQSEYGLNYYKVNPCEDVNQ 496
Query 582 SVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIGAEH 641
+ G V +L S QL N + + E+
Sbjct 497 QFVVSG---GKLVGIL--------TSRNETGSQLLENQFYIKITNGTRRFRRSITESVEN 545
Query 642 VDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFS 701
C C + S + + + + IP +F+
Sbjct 546 ------CPYVSYGKFCI--------KPDGSISTIVPKYLEQFVAPLLNVTENVLIPNSFN 591
Query 702 ISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTR 761
+++T E + M K ++C YICG+S EC NL QYG C + ++ + ++D
Sbjct 592 LTVTDEYIQTRMDKVQINCLQYICGNSLECRNLFQQYGPVCDNMLSVVNSVGQKEDMELL 651
Query 762 EVFAQVKQ-MYKTPTLKYF--GGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQ 818
++ K + TP L G FN S L P P +RSFIEDLLF V
Sbjct 652 NFYSSTKPAGFNTPVLSNVSTGEFNISLFLTTPSSPRRRSFIEDLLFTSVESVGLPTDDA 711
Query 819 YGECLGDIN--ARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAAL 876
Y C +DL+CA+++NGL VLPP++T +M YT++LV+ A G T A
Sbjct 712 YKNCTAGPLGFLKDLVCAREYNGLLVLPPIITAEMQTLYTSSLVASMAFGGITA----AG 767
Query 877 QIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQ 936
IPFA Q+ R N +G+TQ++L +NQ++IA FNKAI +QE +TS AL ++QDVVN+
Sbjct 768 AIPFATQLQARINHLGITQSLLLKNQEKIAASFNKAIGHMQEGFRSTSLALQQIQDVVNK 827
Query 937 NAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIR 996
+ L + L+ NFGAISSV+ +I +LD ++A Q+DRLITGRL SL + +
Sbjct 828 QSAILTETMASLNKNFGAISSVIQEIYLQLDAIQANAQVDRLITGRLSSLSVLASAKQAE 887
Query 997 AAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERN 1056
+ LA K++ECV QS R FCG G H+++ PQ AP+G+VF+H TY P N
Sbjct 888 YIRVSQQRELATQKINECVKSQSTRYSFCGNGRHVLTIPQNAPNGIVFIHFTYTPESFVN 947
Query 1057 FTTAPAICHEGK-----AYFPR--EGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCD 1109
T C + A P G+F+ S++IT R+ + P+ IT + +C
Sbjct 948 VTAIVGFCVKPNNASQYAIVPVNGRGIFIQVNDSYYITARDMYMPRHITAGDIVTLTSCQ 1007
Query 1110 VVIGIINNTVYDP-LQPELDSFKEELDKYF--KNHTSPDVDLGDISGINASVVNIQKEID 1166
+N TV ++ + F +EL K++ + PD D + + V+NI +ID
Sbjct 1008 ANYVSVNKTVITTFVENDDFDFDDELSKWWIETKYELPDFDQFNYT---IPVLNITYDID 1064
Query 1167 RLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCL 1226
++ EV K LN+SLIDL+ L + YIKWPWYVWL I +++ + MT CC C
Sbjct 1065 KIEEVIKGLNDSLIDLETLSILKTYIKWPWYVWLAIAFATIIFILILGWVFFMTGCCGCC 1124
Query 1227 KG-------ACSCGSCCKFDE 1240
G CG +
Sbjct 1125 CGCFGIIPLMSKCGKKSSYYT 1145
>sp|P12722|SPIKE_IBVD2 Spike glycoprotein OS=Avian infectious
bronchitis virus (strain D274) OX=11124 GN=S PE=3 SV=1
Length=1154
Score = 675 bits (1741), Expect = 0.0, Method: Composition-based stats.
Identities = 262/1013 (26%), Positives = 406/1013 (40%), Gaps = 110/1013 (11%)
Query 264 LKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQ-TSNFRVVPSGDVVRFPNITNL 322
L Y NGT D + C +P L C + G Y T++ V V R
Sbjct 208 LAYFVNGTAQDVILCDGSPTGLLACQYNTGNFSDGFYPFTNSSLVKEKFIVYR------- 260
Query 323 CPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNV 382
+ + SN V++ + + + +L FS
Sbjct 261 --------ESSVNTTLELTNFTFSN-VSNATPNTGGVQTIQLYQTSTAQSGYYNLNFS-- 309
Query 383 YADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDATSTGNYNYKYRY 442
++ + YK D G + + N +
Sbjct 310 ---------------------FLSSFIYKASDYMYGS--YHPSCKFRLETINNGLWFNSL 346
Query 443 LRHGKLRPFERDISNVPFSPDGKPCTPPALNC--YWPLNDYGFYTTT---GIGYQPYRVV 497
P + F+ C + N G T + G+ +
Sbjct 347 SVSLGYGPIQGGCKQSVFANRATCCYAYSYNGPSLCKGVYRGELTKSFECGLLVFVTKTD 406
Query 498 VLSFELLNAPATVCGPKLSTDLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFG----- 552
+ N P T+ ++ ++CV +N G G G +T + +
Sbjct 407 GSRIQTRNEPFTLTQ-HNYNNITLDRCVEYNIYGRVGQGFITNVTNYAINYNYLADGGMA 465
Query 553 -RDVSDFTDSVRDPKTS--EILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTA 609
D S D ++PC + G V +L S
Sbjct 466 ILDTSGAIDIFVVQGEYGLNYYKVNPCEDVNQQFVVSG---GKLVGIL--------TSRN 514
Query 610 IHADQLTPAWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRST 669
Q N +++ + C C +
Sbjct 515 ETGSQPLENQFYIKIINGTRRSRRSITGNVTN------CPYVTYGKFCI--------KPD 560
Query 670 SQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDST 729
S + + + + IP +F++++T E + M K ++C Y+CG+S
Sbjct 561 GSISTIVPKELEHFVAPLLNVTENVLIPDSFNLTVTDEYIQTRMDKVQINCLQYVCGNSL 620
Query 730 ECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQ-MYKTPTLKYF--GGFNFSQ 786
EC L QYG C + ++ + ++D ++ K + TP L G FN S
Sbjct 621 ECRKLFQQYGPVCDNILSVVNSVGQKEDMELLHFYSSTKPSGFNTPVLSNVSTGEFNISL 680
Query 787 ILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDIN--ARDLICAQKFNGLTVLP 844
+L P + RSFIEDLLF V Y +C +DL CA+++NGL VLP
Sbjct 681 LLTPPSSASGRSFIEDLLFTSVESVGLPTDDAYKKCTAGPLGFLKDLACAREYNGLLVLP 740
Query 845 PLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQ 904
P++T +M YT++LV+ A G T + IPFA Q+ R N +G+TQ++L +NQ++
Sbjct 741 PIITAEMQTLYTSSLVASMAFGGIT----SVGAIPFATQLQARINHLGITQSLLLKNQEK 796
Query 905 IANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILS 964
IA FNKAI +QE +TS AL ++QDVVN+ + L + L+ NFGAISSVL DI
Sbjct 797 IAASFNKAIGHMQEGFRSTSLALQQIQDVVNKQSSILTETMASLNKNFGAISSVLQDIYQ 856
Query 965 RLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDF 1024
+LD ++A+ Q+DR+ITGRL SL + + + LA K++ECV QS R F
Sbjct 857 QLDSIQADAQVDRIITGRLSSLSVLASAKQAEYYRVSQQRELATQKINECVKSQSIRYSF 916
Query 1025 CGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEG-----KAYFPR--EGVF 1077
CG G H+++ PQ AP+G+VF+H TY P N T C A P G+F
Sbjct 917 CGNGRHVLTIPQNAPNGIVFIHFTYTPESFVNVTAIVGFCVNPANASQYAIVPANGRGIF 976
Query 1078 VFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDP-LQPELDSFKEELDK 1136
+ S++IT R+ + P+ IT + +C +N TV + + F +EL K
Sbjct 977 IQVNGSYYITARDMYMPRDITAGDIVTLTSCQANYVSVNKTVITTFVDNDDFDFDDELSK 1036
Query 1137 YFKN--HTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKW 1194
++ + H PD D + + +++I EIDR+ V + LN+SLIDL+ L + YIKW
Sbjct 1037 WWNDTKHELPDFDEFNYT---VPILDIGSEIDRIQGVIQGLNDSLIDLETLSILKTYIKW 1093
Query 1195 PWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKG-------ACSCGSCCKFDE 1240
PWYVWL I +++ L MT CC C G CG +
Sbjct 1094 PWYVWLAIAFATIIFILILGWLFFMTGCCGCCCGCFGIIPLMSKCGKKSSYYT 1146
>sp|P11223|SPIKE_IBVB Spike glycoprotein OS=Avian infectious bronchitis
virus (strain Beaudette) OX=11122 GN=S PE=1 SV=1
Length=1162
Score = 669 bits (1727), Expect = 0.0, Method: Composition-based stats.
Identities = 257/1022 (25%), Positives = 397/1022 (39%), Gaps = 128/1022 (13%)
Query 264 LKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQ-TSNFRVVPSGDVVRFPNITNL 322
L Y NGT D + C +P L C + G Y T++ V V R ++
Sbjct 207 LAYFVNGTAQDVILCDGSPRGLLACQYNTGNFSDGFYPFTNSSLVKQKFIVYRENSVNTT 266
Query 323 CPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNV 382
C L+N F +
Sbjct 267 C------------------------------TLHNFIFHNETGANP-------------- 282
Query 383 YADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNI-DATSTGNYNYKYR 441
V+ I QT Y F+ + + + +
Sbjct 283 -------NPSGVQNIQTYQTKTAQSGYYNFNFSFLSSFVYKESNFMYGSYHPSCKFRLET 335
Query 442 YLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYG-----FYTTTGIGYQPYRV 496
I+ P K YG +G +
Sbjct 336 INNGLWFNSLSVSIAYGPLQGGCKQSVFKGRATCCYAYSYGGPSLCKGVYSGELDHNFEC 395
Query 497 VVLSFELLNAPA--------TVCGPKLSTDLIKNQCVNFNFNGLTGTGVLTPSSKRFQPF 548
+L + + + V ++ N CV++N G TG G +T + +
Sbjct 396 GLLVYVTKSGGSRIQTATEPPVITQNNYNNITLNTCVDYNIYGRTGQGFITNVTDSAVSY 455
Query 549 QQFG------RDVSDFTDSVRDPKTS--EILDISPCSFGGVSVITPGTNASSEVAVLYQD 600
D S D ++PC + G V +L
Sbjct 456 NYLADAGLAILDTSGSIDIFVVQGEYGLNYYKVNPCEDVNQQFVVSG---GKLVGIL--- 509
Query 601 VNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASY 660
S QL N + + + C C
Sbjct 510 -----TSRNETGSQLLENQFYIKITNGTRRFRRSITENVAN------CPYVSYGKFCI-- 556
Query 661 HTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDC 720
+ + + + + + IP +F++++T E + M K ++C
Sbjct 557 ------KPDGSIATIVPKQLEQFVAPLFNVTENVLIPNSFNLTVTDEYIQTRMDKVQINC 610
Query 721 NMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQ-MYKTPTLKYF 779
Y+CG S +C L QYG C + ++ + ++D ++ K + TP L
Sbjct 611 LQYVCGSSLDCRKLFQQYGPVCDNILSVVNSVGQKEDMELLNFYSSTKPAGFNTPVLSNV 670
Query 780 --GGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDIN--ARDLICAQ 835
G FN S +L +P KRS IEDLLF V Y C +DL CA+
Sbjct 671 STGEFNISLLLTNPSSRRKRSLIEDLLFTSVESVGLPTNDAYKNCTAGPLGFFKDLACAR 730
Query 836 KFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQ 895
++NGL VLPP++T +M A YT++LV+ A G T A IPFA Q+ R N +G+TQ
Sbjct 731 EYNGLLVLPPIITAEMQALYTSSLVASMAFGGITA----AGAIPFATQLQARINHLGITQ 786
Query 896 NVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAI 955
++L +NQ++IA FNKAI +QE +TS AL ++QDVV++ + L + L+ NFGAI
Sbjct 787 SLLLKNQEKIAASFNKAIGHMQEGFRSTSLALQQIQDVVSKQSAILTETMASLNKNFGAI 846
Query 956 SSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECV 1015
SSV+ +I + D ++A Q+DRLITGRL SL + + + LA K++ECV
Sbjct 847 SSVIQEIYQQFDAIQANAQVDRLITGRLSSLSVLASAKQAEYIRVSQQRELATQKINECV 906
Query 1016 LGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICH-----EGKAY 1070
QS R FCG G H+++ PQ AP+G+VF+H +Y P N T C A
Sbjct 907 KSQSIRYSFCGNGRHVLTIPQNAPNGIVFIHFSYTPDSFVNVTAIVGFCVKPANASQYAI 966
Query 1071 FPR--EGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDP-LQPEL 1127
P G+F+ S++IT R+ + P+ IT + +C +N TV + +
Sbjct 967 VPANGRGIFIQVNGSYYITARDMYMPRAITAGDVVTLTSCQANYVSVNKTVITTFVDNDD 1026
Query 1128 DSFKEELDKYFKN--HTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQEL 1185
F +EL K++ + H PD D + + +++I EIDR+ V + LN+SLIDL++L
Sbjct 1027 FDFNDELSKWWNDTKHELPDFDKFNYT---VPILDIDSEIDRIQGVIQGLNDSLIDLEKL 1083
Query 1186 GKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKG-------ACSCGSCCKF 1238
+ YIKWPWYVWL I +++ + MT CC C G CG +
Sbjct 1084 SILKTYIKWPWYVWLAIAFATIIFILILGWVFFMTGCCGCCCGCFGIMPLMSKCGKKSSY 1143
Query 1239 DE 1240
Sbjct 1144 YT 1145
>sp|P30206|SPIKE_IBVU1 Spike glycoprotein (Fragment) OS=Avian
infectious bronchitis virus (strain UK/123/82) OX=31626 GN=S
PE=3 SV=1
Length=520
Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 52/339 (15%), Positives = 96/339 (28%), Gaps = 54/339 (16%)
Query 264 LKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQ-TSNFRVVPSGDVVRFPNITNL 322
L Y NGT D + C +P L C + G Y T++ V V R ++
Sbjct 190 LAYFVNGTAQDVILCDGSPTGLLACQYNTGNFSDGFYPFTNSSLVKEKFIVYRESSVNTT 249
Query 323 CPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTF----FSTFKCYGVSATKLNDLC 378
+S + N+T T + Y S +
Sbjct 250 LDVT----------------------NFTFSNVSNATPNTGGVHTIQLYQTSTAQSGYYN 287
Query 379 FSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDATSTGNYNY 438
F+ + SF+ K D ++L G L +N ++
Sbjct 288 FNFSFLSSFIYKESDYMY-----GSYHPSCKFRLETINNG--LXFNPLSVSLG------- 333
Query 439 KYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVV 498
Y ++ G + + + ++ PP + + G+ +
Sbjct 334 -YGPIQGGCKQSVFENRATCCYAYSYN--GPPLCKGVYRGELTKSF-ECGLLVFVTKTDG 389
Query 499 LSFELLNAPATVCGPKLSTDLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFG------ 552
+ N P T+ ++ ++CV +N G G G +T + +
Sbjct 390 SRIQTRNEPFTLTQ-HNYNNITLDRCVEYNIYGRVGQGFITNVTNYAINYNYLADGGMAI 448
Query 553 RDVSDFTDSVRDPKTS--EILDISPCSFGGVSVITPGTN 589
D S D ++PC + G
Sbjct 449 LDTSGAIDIFVVQGEYGLNYYKVNPCEDVNQQFVVSGGK 487
>sp|P17662|SPIKE_IBVD3 Spike glycoprotein (Fragment) OS=Avian
infectious bronchitis virus (strain D3896) OX=11125 GN=S PE=3
SV=2
Length=550
Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 53/335 (16%), Positives = 97/335 (29%), Gaps = 46/335 (14%)
Query 264 LKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQ-TSNFRVVPSGDVVRFPNITNL 322
L Y NGT D + C +P L C + G Y T++ V V R ++
Sbjct 208 LAYFVNGTAQDVILCDGSPTGLLACQYNTGNFSDGFYPFTNSSLVKEKFIVYRESSVNTT 267
Query 323 CPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNV 382
F +V SN + T + Y S + F+
Sbjct 268 LE----LTNFTFSNV--------SNANPNTG------GVHTIQLYQTSTAQSGHYNFNFS 309
Query 383 YADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDATSTGNYNYKYRY 442
+ SF K D ++L G L +N+ ++ Y
Sbjct 310 FLSSFTYKESDYMY-----GSYHPSCKFRLETINNG--LWFNSLSVSLG--------YGP 354
Query 443 LRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFE 502
++ G + ++ + ++ PP + + G+ + +
Sbjct 355 IQGGCKQSVFQNRATCCYAYSYN--GPPLCKGVYRGELTKSF-ECGLLVFVTKTDGSRIQ 411
Query 503 LLNAPATVCGPKLSTDLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFG------RDVS 556
N P T+ ++ ++CV +N G G G +T + + D S
Sbjct 412 TRNEPFTLTQ-HNYNNITLDRCVEYNIYGRVGQGFITNVTNYAINYNYLADGGMAILDTS 470
Query 557 DFTDSVRDPKTS--EILDISPCSFGGVSVITPGTN 589
D ++PC + G
Sbjct 471 GAIDIFVVQGEYGLNYYKVNPCEDVNQQFVVSGGK 505
>sp|P30208|SPIKE_IBVU3 Spike glycoprotein (Fragment) OS=Avian
infectious bronchitis virus (strain UK/167/84) OX=31628 GN=S
PE=3 SV=1
Length=520
Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 49/348 (14%), Positives = 86/348 (25%), Gaps = 72/348 (21%)
Query 264 LKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQ-TSNFRVVPSGDVVRFPNITNL 322
L Y NGT D + C +P L C + G Y T++ V V R
Sbjct 190 LAYFVNGTAQDVILCDGSPTGLLACQYNTGNFSDGFYPFTNSSLVKEKFIVYR------- 242
Query 323 CPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNV 382
+ + SN V++ + + + +L FS
Sbjct 243 --------ESSVNTTLELTNFTFSN-VSNATPNTGGVQTIQLYQTKTAQSGYYNLNFS-- 291
Query 383 YADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDATSTGNYNYKYRY 442
++ ++YK D G ++ + G +
Sbjct 292 ---------------------FLSSFSYKASDYMYGSYHPSCKFRLETINNGFW------ 324
Query 443 LRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFE 502
P + P K Y + Y+
Sbjct 325 -----FNPLSVSLGYGPIQGGCKQSVFANRATCCYAYSYNGPSLCKGVYRGELTKSFECG 379
Query 503 LLNAPATVCGPKLST-------------DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQ 549
LL G ++ T ++ ++CV +N G G G +T + +
Sbjct 380 LLVFVTKTDGSRIQTRNEPFTLTQHNYNNITLDRCVEYNIYGRVGQGFITNVTNYAINYN 439
Query 550 QFG------RDVSDFTDSVRDPKTS--EILDISPCSFGGVSVITPGTN 589
D S D ++PC + G
Sbjct 440 YLADGGMAILDTSGAIDIFVVQGEYGLNYYKVNPCEDVNQQFVVSGGK 487
>sp|P30207|SPIKE_IBVU2 Spike glycoprotein (Fragment) OS=Avian
infectious bronchitis virus (strain UK/142/86) OX=31627 GN=S
PE=3 SV=1
Length=520
Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 49/340 (14%), Positives = 85/340 (25%), Gaps = 56/340 (16%)
Query 264 LKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQ-TSNFRVVPSGDVVRFPNITNL 322
L Y NGT D + C +P L C + G Y T++ V V R
Sbjct 190 LAYFVNGTAQDVILCDGSPTGLLACQYNTGNFSDGFYPFTNSSLVKEKFIVYR------- 242
Query 323 CPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNV 382
+ + SN V++ + + +
Sbjct 243 --------ESSVNTTLELTNFTFSN-VSNATPNTGGVQTIQL--------------YQTI 279
Query 383 YADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDATSTGNYNYKYRY 442
A S ++ + YK D G + N +
Sbjct 280 TAQSGYYNL---------NFSFLSSFIYKASDYMYGS--YHPRCKFRLETINNGLWFNSL 328
Query 443 LRHGKLRPFERDISNVPFSPDGKPCTPPALNC--YWPLNDYGFYTTT---GIGYQPYRVV 497
P + F C + N G T + G+ +
Sbjct 329 SVSLGYGPIQGGCKQSVFENRATCCYAYSYNGPSLCKGVYRGELTKSFECGLLVFVTKTD 388
Query 498 VLSFELLNAPATVCGPKLSTDLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFG----- 552
++ N P T+ ++ ++CV +N G G G +T + +
Sbjct 389 GSRIQIRNEPLTLTQ-HNYNNITLDRCVEYNIYGRVGQGFITNVTNYAINYNYLADGGMA 447
Query 553 -RDVSDFTDSVRDPKTS--EILDISPCSFGGVSVITPGTN 589
D S D ++PC + G
Sbjct 448 ILDTSGAIDIFVVQGEYGLNYYKVNPCEDVNQQFVVSGGK 487
>sp|B0R6I4|BAST_HALS3 Transducer protein BasT OS=Halobacterium
salinarum (strain ATCC 29341 / DSM 671 / R1) OX=478009 GN=basT
PE=1 SV=1
Length=805
Score = 49.0 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/123 (23%), Positives = 54/123 (44%), Gaps = 18/123 (15%)
Query 893 VTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNF 952
+ ++V E + IA FN + ++ +L + + D V+ + ++T ++ S
Sbjct 462 LDEDVDSEPMQDIAEAFNDMMGDVEATLAQVRS----IADAVDAASTDVSTSAAEIRSAS 517
Query 953 GAISSVLNDILSRLDKVEAEVQIDRL--ITGRLQSLQTYVTQQLIRAAEIRASANLAATK 1010
+S + DI +A+ Q DRL + + SL V EI ASA+ A
Sbjct 518 DQVSESVQDI-----SADADQQRDRLGTVGDEVTSLSATV-------EEIAASADDVAET 565
Query 1011 MSE 1013
+++
Sbjct 566 VNQ 568
>sp|B8F3P6|MUKF_GLAP5 Chromosome partition protein MukF OS=Glaesserella
parasuis serovar 5 (strain SH0165) OX=557723 GN=mukF
PE=3 SV=1
Length=443
Score = 42.4 bits (98), Expect = 0.027, Method: Composition-based stats.
Identities = 29/113 (26%), Positives = 59/113 (52%), Gaps = 17/113 (15%)
Query 879 PFAMQMAYRFNGIGVTQNVLYENQK--------QIANQFNKAISQIQESLTTTSTALGKL 930
P +A F+ I ++Q ++ ENQ+ ++ +++AI+ Q+ L TS L +L
Sbjct 160 PLKFSVAEIFDSIDLSQRMMDENQQQIRERIAMLLSQNWHEAIATCQQLLDETSGNLREL 219
Query 931 QDVVNQNAQALNTLVKQLSSNFGAISSVLN-DILSRLDKVEAEVQ--IDRLIT 980
QDV+N + L + + ++ S ++ D L +D++ +Q +DR+I+
Sbjct 220 QDVLNASGDKLQSQLLRIQ------SCLIGRDDLDFVDQLIVNLQNKLDRIIS 266
>sp|B3PIA0|PNP_CELJU Polyribonucleotide nucleotidyltransferase
OS=Cellvibrio japonicus (strain Ueda107) OX=498211 GN=pnp PE=3
SV=1
Length=710
Score = 41.7 bits (96), Expect = 0.052, Method: Composition-based stats.
Identities = 31/197 (16%), Positives = 74/197 (38%), Gaps = 31/197 (16%)
Query 838 NGLTVLPPLLTDD--------MIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFN 889
NG VL +L D+ +A T+ + + ++I +A R +
Sbjct 473 NGFAVLTDILGDEDHLGDMDFKVAGTTSGVTALQMDIKIEGITEEIMEIALEQALAARLH 532
Query 890 GIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLS 949
+G VL +++ A+S+ T K++D++ + + ++ ++ +
Sbjct 533 ILGEMNKVLSQSR--------TAVSENAPRFETIKIHPDKIRDIIGKGGATIRSITEETN 584
Query 950 SN-----------FGAISSVLNDILSRLDKVEAEVQIDRLITG---RLQSLQTYVTQQLI 995
S+ + + L L+R+ + AE +I + G R+ +V
Sbjct 585 SSIDIDDDGTVKVYADDNEALQAALNRIGAIVAEAEIGAIYEGTVVRIVDFGAFVNFLPG 644
Query 996 RAAEIRASANLAATKMS 1012
+ + S +A +++
Sbjct 645 KDGLVHIS-QIADERVN 660
>sp|P30141|MRP4_STRPY Fibrinogen- and Ig-binding protein OS=Streptococcus
pyogenes OX=1314 GN=mrp4 PE=3 SV=1
Length=388
Score = 41.3 bits (95), Expect = 0.056, Method: Composition-based stats.
Identities = 32/144 (22%), Positives = 56/144 (39%), Gaps = 29/144 (20%)
Query 881 AMQMAYR-----FNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVN 935
A++ R N + T + E ++IA ++A + Q++L + ++ D+ N
Sbjct 68 ALEKQARDLGDTINHMSQT---ISEQSRKIAALKSEAELKNQQALEALNNKNKQISDLTN 124
Query 936 QNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI 995
+NA QL AI + I + ++ A+ Q L +Q
Sbjct 125 ENA--------QLKE---AIEGYVQTIQNASREIAAKQQ----------ELAAAKSQLEA 163
Query 996 RAAEIRASANLAATKMSECVLGQS 1019
+ AEI A A+K E QS
Sbjct 164 KNAEIEALKQQDASKTEEIAKLQS 187
>sp|Q3BUW9|CCME1_XANE5 Cytochrome c-type biogenesis protein CcmE
1 OS=Xanthomonas euvesicatoria pv. vesicatoria (strain 85-10)
OX=316273 GN=ccmE1 PE=3 SV=1
Length=156
Score = 37.8 bits (86), Expect = 0.22, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 9/89 (10%)
Query 844 PPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAM---QMAYRFNGIGVTQNVLYE 900
P ++ A Y + G AG AG +L++ F + A + G+ ++ +
Sbjct 40 PSQVSAGEAAGYQQFRLGGMVKAGSIQRAGDSLKVSFTVIDKNAATQVEYTGILPDLFRD 99
Query 901 NQKQIANQFNKAISQIQESLTTTSTALGK 929
NQ IAN ++Q + L K
Sbjct 100 NQSVIAN------GRMQGGRFVANEVLAK 122
>sp|Q7VL94|MUKF_HAEDU Chromosome partition protein MukF OS=Haemophilus
ducreyi (strain 35000HP / ATCC 700724) OX=233412 GN=mukF
PE=1 SV=1
Length=443
Score = 38.2 bits (87), Expect = 0.45, Method: Composition-based stats.
Identities = 29/112 (26%), Positives = 56/112 (50%), Gaps = 15/112 (13%)
Query 879 PFAMQMAYRFNGIGVTQNVLYENQK--------QIANQFNKAISQIQESLTTTSTALGKL 930
P +A F+ I ++Q ++ ENQ ++ +++AI Q+ L TS L +L
Sbjct 160 PLKFSVAEIFDSIDLSQRMMDENQHQIREQIAGLLSQNWHEAIINCQQLLDETSINLREL 219
Query 931 QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQ--IDRLIT 980
QD +N L + + ++ S IS D L+ +D++ +Q +DR+++
Sbjct 220 QDTLNAAGDKLQSQLLRIQSCL--IS---RDDLAFVDQLIVNLQNKLDRIMS 266
>sp|Q6LUI8|PNP_PHOPR Polyribonucleotide nucleotidyltransferase
OS=Photobacterium profundum (strain SS9) OX=298386 GN=pnp PE=3
SV=1
Length=707
Score = 38.2 bits (87), Expect = 0.52, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 61/158 (39%), Gaps = 29/158 (18%)
Query 882 MQMAYRFNGIGVTQNVLY--ENQ-----KQIANQFNKAIS-------QIQESLTTTSTAL 927
+ G+T+ ++ NQ K I + + AI Q + T
Sbjct 502 TALQMDIKIEGITKEIMQIALNQAKGARKHILSVMDDAIGTHRDDISQFAPRIHTMKINS 561
Query 928 GKLQDVVNQNAQALNTLVKQLSSNF-----GAIS------SVLNDILSRLDKVEAEVQID 976
K++DV+ + + L ++ + G I + + + R++++ A+V++
Sbjct 562 DKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAATEGAAAKEAIRRIEEITADVEVG 621
Query 977 RLITG---RLQSLQTYVTQQLIRAAEIRASANLAATKM 1011
R+ TG R+ +V+ + + S +A ++
Sbjct 622 RIYTGKVMRIVDFGAFVSVIGAKEGLVHIS-QIAQERV 658
>sp|Q6D445|MUKF_PECAS Chromosome partition protein MukF OS=Pectobacterium
atrosepticum (strain SCRI 1043 / ATCC BAA-672) OX=218491
GN=mukF PE=3 SV=1
Length=441
Score = 37.4 bits (85), Expect = 0.90, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 15/106 (14%)
Query 879 PFAMQMAYRFNGIGVTQNVLYENQK----QIANQFNK----AISQIQESLTTTSTALGKL 930
P +A F+ I ++Q V+ E Q+ IA N+ AIS ++ LT TS+ L +L
Sbjct 159 PLKYSVAEIFDSIDLSQRVMDEQQQGVKDDIAALLNQDWRAAISSCEQLLTETSSTLREL 218
Query 931 QDVVNQNAQALNTLVKQLS-------SNFGAISSVLNDILSRLDKV 969
QD + L T + + N + ++ D+ ++LD++
Sbjct 219 QDTLEAAGDKLQTSLLSIQDTIMNNPHNLEFVDKLVFDLQNKLDRI 264
>sp|P12569|FUS_CDVO Fusion glycoprotein F0 OS=Canine distemper
virus (strain Onderstepoort) OX=11233 GN=F PE=1 SV=1
Length=662
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 23/90 (26%), Positives = 35/90 (39%), Gaps = 8/90 (9%)
Query 861 SGTATAGWTFGAGAALQIPFAMQM-AYRFNGIGVTQNVLYENQKQIANQFNKAISQIQES 919
+G AG G A QI + + N + Q NKAI +I+E+
Sbjct 226 AGVVLAGVALGVATAAQITAGIALHQSNLNAQAIQSLRTSLEQS------NKAIEEIREA 279
Query 920 LTTTSTALGKLQDVVNQN-AQALNTLVKQL 948
T A+ +QD VN A+ + +L
Sbjct 280 TQETVIAVQGVQDYVNNELVPAMQHMSCEL 309
>sp|Q008X4|SPIKE_WBV24 Spike glycoprotein OS=White bream virus
(isolate Blicca bjoerkna L./Germany/DF24/00) OX=766180 GN=S
PE=3 SV=1
Length=1220
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 24/157 (15%), Positives = 50/157 (32%), Gaps = 17/157 (11%)
Query 625 GNNVFQTQAGCLIGAEHVDTS-------YECDIPIGAGICASYHTVSLLRSTSQKSIVAY 677
G+ F G + + + Y D G I Y T L ++ +
Sbjct 645 GSYQFDQFVGGALNLRTLTFTMRKPTQLYVLDPIEGTYIIPDYQTKFPLLTSGTQ----- 699
Query 678 TMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQ 737
T D ++ + + +FSI +++ +C +IC C
Sbjct 700 TYYYDPDQTVTNTTEVSKVTIDFSIRTM-----ITLDPLVFNCEEFICDKDPTCRTQFSS 754
Query 738 YGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTP 774
Y + AL + +R+ + + ++ + T
Sbjct 755 YCQTTQPILAALKDAFEKYNRSIADYTSTIRALTNTT 791
>sp|O54990|PROM1_MOUSE Prominin-1 OS=Mus musculus OX=10090 GN=Prom1
PE=1 SV=1
Length=867
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 50/120 (42%), Gaps = 11/120 (9%)
Query 1111 VIGIINNTVYDPLQPELDSFKEELDKYFKNHTSPDVD--LGDISGINASVVNIQKEI--- 1165
+ ++ T + L + +E+ +N T + + I++++ ++ + I
Sbjct 345 TVTEVDKTDLESLVKRGYTTIDEIPNTIQNQTVDVIKDVKNTLDSISSNIKDMSQSIPIE 404
Query 1166 DRLNEVAKNLNES--LIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCC 1223
D L +V+ LN S ++ QEL K E+Y Y WLG + + ++ C
Sbjct 405 DMLLQVSHYLNNSNRYLN-QELPKLEEYDS---YWWLGGLIVCFLLTLIVTFFFLGLLCG 460
>sp|A5UEK6|MUKF_HAEIG Chromosome partition protein MukF OS=Haemophilus
influenzae (strain PittGG) OX=374931 GN=mukF PE=3 SV=1
Length=444
Score = 37.0 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 27/105 (26%), Positives = 49/105 (47%), Gaps = 14/105 (13%)
Query 879 PFAMQMAYRFNGIGVTQNVLYENQKQIANQ--------FNKAISQIQESLTTTSTALGKL 930
P +A F+ I ++Q ++ ENQ+ I N+ + AIS + L TS L +L
Sbjct 163 PLKYSVAEIFDSIDLSQRIMDENQQSIKNEIAELLTKDWQAAISSCERLLDETSGNLREL 222
Query 931 QDVVNQNAQALNTLVKQLS------SNFGAISSVLNDILSRLDKV 969
QD +N L + ++ + I ++ D+ S+LD++
Sbjct 223 QDTLNAAGDKLQAQLLRIQDCVIGRDDLYFIDQLITDLQSKLDRI 267
>sp|B0BUD7|MUKF_ACTPJ Chromosome partition protein MukF OS=Actinobacillus
pleuropneumoniae serotype 3 (strain JL03) OX=434271
GN=mukF PE=3 SV=1
Length=443
Score = 37.0 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 19/114 (17%)
Query 879 PFAMQMAYRFNGIGVTQNVLYENQ--------KQIANQFNKAISQIQESLTTTSTALGKL 930
P +A F+ I ++Q ++ ENQ + ++ +++AI ++ L TS L +L
Sbjct 160 PLKYSVAEIFDSIDLSQRMMDENQHQIRERIAELLSQNWHEAILSCEQLLDETSGNLREL 219
Query 931 QDVVNQNAQALNTLVKQLSSNFGAISSVL--NDILSRLDKVEAEVQ--IDRLIT 980
QD +N + L QL I S L D L +D++ +Q +DR+I+
Sbjct 220 QDTLNAAG---DKLQAQLLR----IQSCLIGRDDLDFVDQLIVNLQNKLDRIIS 266
>sp|B3GXC3|MUKF_ACTP7 Chromosome partition protein MukF OS=Actinobacillus
pleuropneumoniae serotype 7 (strain AP76) OX=537457
GN=mukF PE=3 SV=1
Length=443
Score = 37.0 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 19/114 (17%)
Query 879 PFAMQMAYRFNGIGVTQNVLYENQ--------KQIANQFNKAISQIQESLTTTSTALGKL 930
P +A F+ I ++Q ++ ENQ + ++ +++AI ++ L TS L +L
Sbjct 160 PLKYSVAEIFDSIDLSQRMMDENQHQIRERIAELLSQNWHEAILSCEQLLDETSGNLREL 219
Query 931 QDVVNQNAQALNTLVKQLSSNFGAISSVL--NDILSRLDKVEAEVQ--IDRLIT 980
QD +N + L QL I S L D L +D++ +Q +DR+I+
Sbjct 220 QDTLNAAG---DKLQAQLLR----IQSCLIGRDDLDFVDQLIVNLQNKLDRIIS 266
>sp|A3MZU5|MUKF_ACTP2 Chromosome partition protein MukF OS=Actinobacillus
pleuropneumoniae serotype 5b (strain L20) OX=416269
GN=mukF PE=3 SV=1
Length=443
Score = 37.0 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 19/114 (17%)
Query 879 PFAMQMAYRFNGIGVTQNVLYENQ--------KQIANQFNKAISQIQESLTTTSTALGKL 930
P +A F+ I ++Q ++ ENQ + ++ +++AI ++ L TS L +L
Sbjct 160 PLKYSVAEIFDSIDLSQRMMDENQHQIRERIAELLSQNWHEAILSCEQLLDETSGNLREL 219
Query 931 QDVVNQNAQALNTLVKQLSSNFGAISSVL--NDILSRLDKVEAEVQ--IDRLIT 980
QD +N + L QL I S L D L +D++ +Q +DR+I+
Sbjct 220 QDTLNAAG---DKLQAQLLR----IQSCLIGRDDLDFVDQLIVNLQNKLDRIIS 266
>sp|Q9X0M7|MCP2_THEMA Methyl-accepting chemotaxis protein 2 OS=Thermotoga
maritima (strain ATCC 43589 / DSM 3109 / JCM 10099
/ NBRC 100826 / MSB8) OX=243274 GN=mcp2 PE=1 SV=1
Length=530
Score = 37.0 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 15/76 (20%), Positives = 38/76 (50%), Gaps = 3/76 (4%)
Query 910 NKAISQIQESLTTTSTALGKLQDVVN---QNAQALNTLVKQLSSNFGAISSVLNDILSRL 966
N+ + I ++ + A+ ++ + +NA+ + VK++++ IS+ ++ SR+
Sbjct 452 NEMLQNIAAAIEEQTAAVDEITTAMTENAKNAEEITNSVKEVNARLQEISASTEEVTSRV 511
Query 967 DKVEAEVQIDRLITGR 982
+ VQ+ + I R
Sbjct 512 QTIRENVQMLKEIVAR 527
>sp|Q6C0L6|ATG17_YARLI Autophagy-related protein 17 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=ATG17 PE=3
SV=1
Length=408
Score = 37.0 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 43/92 (47%), Gaps = 10/92 (11%)
Query 890 GIGVTQNVLYE---NQKQIANQF-NKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLV 945
+G+ L + +Q +A++F + A+++ ++SL T + + Q +AL L
Sbjct 38 HLGIRTQFLAKAHAHQWTLASKFYSNALTRTKKSLETVTRQQTRFQAARGALEEALGELA 97
Query 946 ---KQLSSNFGAISSVLNDILSRLDKVEAEVQ 974
QL N GA L + + D + A+VQ
Sbjct 98 ATPVQLRVNNGA--HNLREFVDE-DLISAQVQ 126
>sp|A5N4M6|SYC_CLOK5 Cysteine--tRNA ligase OS=Clostridium kluyveri
(strain ATCC 8527 / DSM 555 / NCIMB 10680) OX=431943 GN=cysS
PE=3 SV=1
Length=465
Score = 36.7 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 31/76 (41%), Gaps = 5/76 (7%)
Query 1112 IGIINNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKE-IDRLNE 1170
INN + +E LDKY + + L +SG + +N E +D
Sbjct 257 FVNINNQKMSKSLNNFFTTREILDKYEPDV----IRLFMLSGHYRTPINFSIELLDSTKS 312
Query 1171 VAKNLNESLIDLQELG 1186
+ S+I+L+EL
Sbjct 313 ALDRICNSIINLEELS 328
>sp|B9DY88|SYC_CLOK1 Cysteine--tRNA ligase OS=Clostridium kluyveri
(strain NBRC 12016) OX=583346 GN=cysS PE=3 SV=1
Length=465
Score = 36.7 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 31/76 (41%), Gaps = 5/76 (7%)
Query 1112 IGIINNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKE-IDRLNE 1170
INN + +E LDKY + + L +SG + +N E +D
Sbjct 257 FVNINNQKMSKSLNNFFTTREILDKYEPDV----IRLFMLSGHYRTPINFSIELLDSTKS 312
Query 1171 VAKNLNESLIDLQELG 1186
+ S+I+L+EL
Sbjct 313 ALDRICNSIINLEELS 328
>sp|Q08581|SLK19_YEAST Kinetochore protein SLK19 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=SLK19
PE=1 SV=1
Length=821
Score = 36.7 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 31/142 (22%), Positives = 61/142 (43%), Gaps = 16/142 (11%)
Query 887 RFNGIGVTQNVLYENQKQIANQFNKAIS---QIQESLTTTSTALGKLQDVVNQNAQALNT 943
R + VL NQK + +F+ +I+ I+ T L + + ++N L
Sbjct 379 RIKELNTEIKVLNSNQKILQEKFDASITEVNHIKGEHENTVNTLQQNEKILNDKNVELEN 438
Query 944 LVKQLSSNFGAIS---SVLNDILSRL----DKVEA-----EVQIDRLITGRLQSLQTY-V 990
+ +L N +S + LND+ SR+ DK+E+ + + + L +L +T +
Sbjct 439 MKAELKGNNDKLSEYETTLNDLNSRIVQLNDKIESTDIVLKSKENELDNLKLSLKETLSI 498
Query 991 TQQLIRAAEIRASANLAATKMS 1012
++ + I L +TK +
Sbjct 499 SKDFNDSDLIGQINELISTKNN 520
>sp|P0DM86|CRFC_ECOLX Clamp-binding protein CrfC OS=Escherichia
coli OX=562 GN=crfC PE=3 SV=1
Length=742
Score = 36.7 bits (83), Expect = 1.9, Method: Composition-based stats.
Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 14/100 (14%)
Query 916 IQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQ- 974
I+ +LT+ + L + QD +N AL F S L+++ +R + + Q
Sbjct 480 IELALTSANHFLRQQQDALNAQLAAL----------FQDDSEPLSEMRTRCETLLQTAQN 529
Query 975 -IDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSE 1013
I R T R L++ + + L IR ++SE
Sbjct 530 TISRDFTLRFAELESTLCRVLTDV--IRPIEQQVKMELSE 567
>sp|O30867|MUKF_HAEAE Chromosome partition protein MukF OS=Haemophilus
aegyptius OX=197575 GN=mukF PE=3 SV=1
Length=443
Score = 36.3 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 25/105 (24%), Positives = 47/105 (45%), Gaps = 14/105 (13%)
Query 879 PFAMQMAYRFNGIGVTQNVLYENQK--------QIANQFNKAISQIQESLTTTSTALGKL 930
P +A F+ I ++Q ++ ENQ+ + + AIS + L TS L +L
Sbjct 162 PLKYSVAEIFDSIDLSQRIMDENQQSIKDEIAELLTKDWQAAISSCERLLDETSGNLREL 221
Query 931 QDVVNQNAQALNTLVKQLS------SNFGAISSVLNDILSRLDKV 969
QD +N L + ++ + I ++ D+ S+LD++
Sbjct 222 QDTLNAAGDKLQAQLLRIQDCVIGRDDLYFIDQLITDLQSKLDRI 266
>sp|P45185|MUKF_HAEIN Chromosome partition protein MukF OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 /
Rd) OX=71421 GN=mukF PE=3 SV=2
Length=444
Score = 36.3 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 25/105 (24%), Positives = 47/105 (45%), Gaps = 14/105 (13%)
Query 879 PFAMQMAYRFNGIGVTQNVLYENQK--------QIANQFNKAISQIQESLTTTSTALGKL 930
P +A F+ I ++Q ++ ENQ+ + + AIS + L TS L +L
Sbjct 163 PLKYSVAEIFDSIDLSQRIMDENQQSIKDEIAELLTKDWQAAISSCERLLDETSGNLREL 222
Query 931 QDVVNQNAQALNTLVKQLS------SNFGAISSVLNDILSRLDKV 969
QD +N L + ++ + I ++ D+ S+LD++
Sbjct 223 QDTLNAAGDKLQAQLLRIQDCVIGRDDLYFIDQLITDLQSKLDRI 267
>sp|A5UBY0|MUKF_HAEIE Chromosome partition protein MukF OS=Haemophilus
influenzae (strain PittEE) OX=374930 GN=mukF PE=3 SV=1
Length=444
Score = 36.3 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 25/105 (24%), Positives = 47/105 (45%), Gaps = 14/105 (13%)
Query 879 PFAMQMAYRFNGIGVTQNVLYENQK--------QIANQFNKAISQIQESLTTTSTALGKL 930
P +A F+ I ++Q ++ ENQ+ + + AIS + L TS L +L
Sbjct 163 PLKYSVAEIFDSIDLSQRIMDENQQSIKDEIAELLTKDWQAAISSCERLLDETSGNLREL 222
Query 931 QDVVNQNAQALNTLVKQLS------SNFGAISSVLNDILSRLDKV 969
QD +N L + ++ + I ++ D+ S+LD++
Sbjct 223 QDTLNAAGDKLQAQLLRIQDCVIGRDDLYFIDQLITDLQSKLDRI 267
>sp|A7MEU5|MUKF_CROS8 Chromosome partition protein MukF OS=Cronobacter
sakazakii (strain ATCC BAA-894) OX=290339 GN=mukF PE=3
SV=1
Length=440
Score = 35.5 bits (80), Expect = 3.4, Method: Composition-based stats.
Identities = 31/112 (28%), Positives = 54/112 (48%), Gaps = 15/112 (13%)
Query 879 PFAMQMAYRFNGIGVTQNVLYENQKQ----IANQFNK----AISQIQESLTTTSTALGKL 930
P +A F+ I +TQ ++ E Q+ IA NK AIS + L+ TS L +L
Sbjct 159 PLKYSVAEIFDSIDLTQRIMDEQQQLVKDDIAQLLNKDWRAAISSCELLLSETSGTLREL 218
Query 931 QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQ--IDRLIT 980
QD + L + Q+ +++ D L +D++ ++Q +DR+I+
Sbjct 219 QDTLEAAGDKLQANLLQIQE-----ATLGRDDLHFVDRLTYDLQSKLDRIIS 265
>sp|F1QC17|EMI1A_DANRE EMILIN-1-A OS=Danio rerio OX=7955 GN=emilin1a
PE=3 SV=1
Length=1014
Score = 35.5 bits (80), Expect = 4.1, Method: Composition-based stats.
Identities = 19/109 (17%), Positives = 44/109 (40%), Gaps = 9/109 (8%)
Query 900 ENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVL 959
+NQ + + K + IQ LT + D + + L +++ +N +++
Sbjct 619 DNQNTVTRKLGKDLKSIQGELTGILQIFNSINDTL----KGLRNTIQKHGNNITDLNTSK 674
Query 960 NDILSRLDKVEAEV---QIDRLITGRLQSLQTYVTQQLIRAAEIRASAN 1005
I LD++ ++ ++D G S+ ++ + + E R S
Sbjct 675 GKIYLELDQLYDDLNKHKVDS--KGHFDSISSFNSNLMTEMGECRLSRE 721
>sp|A8F461|FLGI_PSELT Flagellar P-ring protein OS=Pseudothermotoga
lettingae (strain ATCC BAA-301 / DSM 14385 / NBRC 107922
/ TMO) OX=416591 GN=flgI PE=3 SV=1
Length=331
Score = 35.1 bits (79), Expect = 4.4, Method: Composition-based stats.
Identities = 45/265 (17%), Positives = 84/265 (32%), Gaps = 21/265 (8%)
Query 531 GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEIL---DISPCSFGG----VSV 583
GL GTG + +VS +DS++ ++ ++ DI P G VSV
Sbjct 44 GLNGTGDSGQVNSTLLANMAKAFNVSIDSDSLKTKNSALVMVFADIPPFYKEGMRLDVSV 103
Query 584 ITPGTNASSEVAVLYQ--DVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQA--GCLIGA 639
+ G S E L Q A+ ++ N+ G +
Sbjct 104 ASIGDAKSLEGGFLVQTPLYGADGNVYAVAQGNVSVGGFDVKVSANLQNKYRIVGYIPNG 163
Query 640 EHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTN 699
V+ + + S + T ++ S+ I +P+
Sbjct 164 AIVEKEIPFEFVQSNSVTILLKKPDFTTSARVAQAINTTFERKIAKAVDASSIKIEVPSA 223
Query 700 F-----SISITTEVMPVSMA---KTSVD--CNMYICGDSTECANLLLQYGSFCTQLNRAL 749
F + E + VS+ + V+ + G + + + L YG F +
Sbjct 224 FEDDIVTFLSLVEEVEVSVDQPARVVVNEKTGTVVFGGNVKILDFTLSYGVFNITVKNGK 283
Query 750 SGIAAEQDRNTREVFAQVKQMYKTP 774
+ E D + + +K + TP
Sbjct 284 VESSEEVDATVSSLVSALKNLGATP 308
>sp|P10865|FUS_NDVM Fusion glycoprotein F0 OS=Newcastle disease
virus (strain Miyadera/51) OX=11185 GN=F PE=3 SV=1
Length=553
Score = 35.1 bits (79), Expect = 5.1, Method: Composition-based stats.
Identities = 19/98 (19%), Positives = 37/98 (38%), Gaps = 13/98 (13%)
Query 851 MIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFN 910
+ A++ A T A + + N N+L + A N
Sbjct 113 RQRRFIGAIIGSVALGVATAAQITAA----SALIQANQN----AANILRLKESIAAT--N 162
Query 911 KAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQL 948
+A+ ++ + L+ + A+GK+Q VN N ++L
Sbjct 163 EAVHEVTDGLSQLAVAVGKMQQFVNDQ---FNNTTQEL 197
>sp|P15492|HLYB_VIBCH Methyl-accepting chemotaxis protein HlyB
OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor
Inaba N16961) OX=243277 GN=hlyB PE=3 SV=2
Length=548
Score = 35.1 bits (79), Expect = 5.2, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query 882 MQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQAL 941
+Q+A + +G T + + N A+ +A E ++Q +VN+ A
Sbjct 306 VQVATAIHELGATVSEIASNAAMAADVAKQATLHSGEGKKVVGEVQNRIQTLVNELDNA- 364
Query 942 NTLVKQLSSNFGAISSVLNDILS 964
+V L++ ISS L+ I S
Sbjct 365 TQVVSSLATQINGISSTLDTIRS 387
>sp|P0C6W0|R1AB_BC512 Replicase polyprotein 1ab OS=Bat coronavirus
512/2005 OX=693999 GN=rep PE=3 SV=1
Length=6793
Score = 35.5 bits (80), Expect = 5.3, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 46/165 (28%), Gaps = 35/165 (21%)
Query 278 CSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFNATKFPSV 337
CS + C+ + + + +Y F V P G T+ N SV
Sbjct 4752 CSSSDRYYRLCNELAQVLTEMVYSNGGFYVKPGGT-------TSGDATTAYAN-----SV 4799
Query 338 YAWERKKISNCVADYSVLYNSTFFSTFKCYGVS----ATKLNDLCFSNVYAD------SF 387
+ A+ + L + + C + KL D C+ + D F
Sbjct 4800 FN----IFQATSANVNRLLS---VDSNTCNNIEVKQLQRKLYDCCYRSSSVDQSFVEEYF 4852
Query 388 VVKGDDVRQIAPGQTGVI------ADYNYKLPDDFMGCVLAWNTR 426
+ GV+ A Y + VL +
Sbjct 4853 GYLRKHFSMMILSDDGVVCYNSEYAALGYVADLNAFKAVLYYQNN 4897
>sp|P35936|FUS_NDVD Fusion glycoprotein F0 OS=Newcastle disease
virus (strain D26/76) OX=11180 GN=F PE=1 SV=1
Length=553
Score = 34.7 bits (78), Expect = 5.8, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 36/88 (41%), Gaps = 10/88 (11%)
Query 862 GTATAGWTFGAGAALQIPFAMQ-MAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESL 920
G G G A QI A + N N+L + A N+A+ ++ + L
Sbjct 119 GAIIGGVALGVATAAQITAASALIQANQN----AANILRLKESIAAT--NEAVHEVTDGL 172
Query 921 TTTSTALGKLQDVVNQNAQALNTLVKQL 948
+ + A+GK+Q VN N ++L
Sbjct 173 SQLAVAVGKMQQFVNDQ---FNKTAQEL 197
>sp|P33615|FUS_NDVQ Fusion glycoprotein F0 OS=Newcastle disease
virus (strain Queensland/66) OX=11186 GN=F PE=3 SV=1
Length=553
Score = 34.7 bits (78), Expect = 6.0, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 35/88 (40%), Gaps = 10/88 (11%)
Query 862 GTATAGWTFGAGAALQIPFAMQ-MAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESL 920
G G G A QI A + N N+L + A N+A+ ++ L
Sbjct 119 GAIIGGVALGVATAAQITAASALIQANQN----AANILLLKESIAAT--NEAVHEVTNGL 172
Query 921 TTTSTALGKLQDVVNQNAQALNTLVKQL 948
+ + A+GK+Q VN N ++L
Sbjct 173 SQLAVAVGKMQQFVNDQ---FNKTAQEL 197
>sp|P33612|FUS_NDVH3 Fusion glycoprotein F0 OS=Newcastle disease
virus (strain Her/33) OX=11187 GN=F PE=3 SV=1
Length=553
Score = 34.7 bits (78), Expect = 7.1, Method: Composition-based stats.
Identities = 19/98 (19%), Positives = 37/98 (38%), Gaps = 13/98 (13%)
Query 851 MIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFN 910
+ A++ A T A + + N N+L + A N
Sbjct 113 RQRRFIGAIIGSVALGVATAAQITAA----SALIQANQN----AANILRLKESIAAT--N 162
Query 911 KAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQL 948
+A+ ++ + L+ + A+GK+Q VN N ++L
Sbjct 163 EAVHEVTDGLSQIAVAVGKMQQFVNDQ---FNNTAQEL 197
>sp|Q9X1E2|MCP4_THEMA Methyl-accepting chemotaxis protein 4 OS=Thermotoga
maritima (strain ATCC 43589 / DSM 3109 / JCM 10099
/ NBRC 100826 / MSB8) OX=243274 GN=mcp4 PE=1 SV=1
Length=566
Score = 34.7 bits (78), Expect = 7.2, Method: Composition-based stats.
Identities = 25/143 (17%), Positives = 56/143 (39%), Gaps = 22/143 (15%)
Query 891 IGVTQNVLYENQ-KQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLS 949
+ V+ ++ +++ IA + N+ + +++ + K QD V + ++ L L +QL
Sbjct 230 LSVSVDIKSKDEFGLIAQKLNETVGNLRKMVQEID----KSQDEVERVSEELFALSQQLR 285
Query 950 SNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAAT 1009
S L +I D + EVQ + + + + E+ A++ +
Sbjct 286 -------SALEEIARASDTISKEVQ----------NASASIEEVTSGSEEVSANSQNISK 328
Query 1010 KMSECVLGQSKRVDFCGKGYHLM 1032
+ E DF G ++
Sbjct 329 LIQEISENADNIADFARNGQRVL 351
>sp|B1WYT4|SASA_CROS5 Adaptive-response sensory kinase SasA OS=Crocosphaera
subtropica (strain ATCC 51142 / BH68) OX=43989
GN=sasA PE=3 SV=1
Length=382
Score = 34.3 bits (77), Expect = 7.3, Method: Composition-based stats.
Identities = 15/85 (18%), Positives = 38/85 (45%), Gaps = 4/85 (5%)
Query 893 VTQNVLYENQ--KQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSS 950
+ + + +++Q +A+ ++ ++ T L K QD + + L Q +
Sbjct 147 LQEQLKFKDQVLAMLAHDLRSPLTAASIAVET--LELAKNQDPTEKQQKLTAQLFNQTRN 204
Query 951 NFGAISSVLNDILSRLDKVEAEVQI 975
F ++ ++ DIL + A++Q+
Sbjct 205 QFRVMNRLITDILQASKSMNAQLQV 229
>sp|Q09094|REC15_SCHPO Meiotic recombination protein rec15 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) OX=284812
GN=rec15 PE=1 SV=1
Length=180
Score = 33.6 bits (75), Expect = 7.5, Method: Composition-based stats.
Identities = 15/85 (18%), Positives = 42/85 (49%), Gaps = 4/85 (5%)
Query 891 IGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGK----LQDVVNQNAQALNTLVK 946
+ + + ++QK +NQ ++++ + +G+ + +V QN+Q + +
Sbjct 15 LAMQAEDMQQHQKSQSNQIASCLAEMNTKQEVVNQTIGQLGRSISEVQQQNSQLVLQSLN 74
Query 947 QLSSNFGAISSVLNDILSRLDKVEA 971
Q++ + ++ + D SR++K+E
Sbjct 75 QINMSMQQVALGIQDYASRINKLEQ 99
>sp|P14623|FUS_NDVI Fusion glycoprotein F0 OS=Newcastle disease
virus (strain Italien/45) OX=11182 GN=F PE=2 SV=1
Length=553
Score = 34.3 bits (77), Expect = 8.1, Method: Composition-based stats.
Identities = 20/98 (20%), Positives = 37/98 (38%), Gaps = 13/98 (13%)
Query 851 MIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFN 910
+ A++ A T A + + N N+L + A N
Sbjct 113 RQRRFIGAIIGSVALGVATPAQITAA----SALIQANQN----AANILRLKESIAAT--N 162
Query 911 KAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQL 948
+A+ ++ + L+ + A+GK+Q VN N +QL
Sbjct 163 EAVHEVTDGLSQLAVAVGKMQQFVNDQ---FNNTAQQL 197
>sp|B7K4P4|NUSB_RIPO1 Transcription antitermination protein NusB
OS=Rippkaea orientalis (strain PCC 8801 / RF-1) OX=41431
GN=nusB PE=3 SV=1
Length=211
Score = 33.6 bits (75), Expect = 9.6, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 43/94 (46%), Gaps = 13/94 (14%)
Query 896 NVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALN-TLVKQLSSNF-- 952
V N++ + ++ A +Q + S AL Q +N+ A A+ + QL+S +
Sbjct 59 EVTQGNERLLKSETQSA--NVQSARAMVSEALKLTQGAINRLAHAIELPEMIQLASQYEV 116
Query 953 --------GAISSVLNDILSRLDKVEAEVQIDRL 978
GA++ +I +L+ V + Q++RL
Sbjct 117 REYALELIGAVNRRRTEIDQQLEAVLVDWQLNRL 150
Lambda K H a alpha
0.318 0.128 0.352 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0392 0.140 1.90 42.6 43.6
Effective search space used: 149140636875
Database: uniprot_sprot.fasta
Posted date: Jun 2, 2024 1:37 PM
Number of letters in database: 206,878,625
Number of sequences in database: 571,609
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40