[Multiple Alignment(many alignments)] [Alignment Bar(many alignments)] [show plain BLAST file]
PSIBLAST 2.11.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Stephen F.
Altschul, John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005)
"Protein database searches using compositionally adjusted
substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: uniprot_sprot.fasta
           570,830 sequences; 206,533,160 total letters

Results from round 1


Query= YP_009725298.1 nsp2 [Severe acute respiratory syndrome coronavirus
2]

Length=638
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

sp|P0DTC1|R1A_SARS2 Replicase polyprotein 1a OS=Severe acute resp...  1328    0.0  
sp|P0DTD1|R1AB_SARS2 Replicase polyprotein 1ab OS=Severe acute re...  1326    0.0  
sp|P0C6F5|R1A_BC279 Replicase polyprotein 1a OS=Bat coronavirus 2...  965     0.0  
sp|P0C6V9|R1AB_BC279 Replicase polyprotein 1ab OS=Bat coronavirus...  963     0.0  
sp|P0C6U8|R1A_SARS Replicase polyprotein 1a OS=Severe acute respi...  956     0.0  
sp|P0C6X7|R1AB_SARS Replicase polyprotein 1ab OS=Severe acute res...  954     0.0  
sp|P0C6F8|R1A_BCHK3 Replicase polyprotein 1a OS=Bat coronavirus H...  951     0.0  
sp|P0C6W2|R1AB_BCHK3 Replicase polyprotein 1ab OS=Bat coronavirus...  949     0.0  
sp|P0C6T7|R1A_BCRP3 Replicase polyprotein 1a OS=Bat coronavirus R...  941     0.0  
sp|P0C6W6|R1AB_BCRP3 Replicase polyprotein 1ab OS=Bat coronavirus...  939     0.0  
sp|P0C6W3|R1AB_BCHK4 Replicase polyprotein 1ab OS=Bat coronavirus...  109     2e-23
sp|P0C6T4|R1A_BCHK4 Replicase polyprotein 1a OS=Bat coronavirus H...  109     3e-23
sp|P0C6W4|R1AB_BCHK5 Replicase polyprotein 1ab OS=Bat coronavirus...  109     4e-23
sp|P0C6T5|R1A_BCHK5 Replicase polyprotein 1a OS=Bat coronavirus H...  108     4e-23
sp|P0C6W1|R1AB_BC133 Replicase polyprotein 1ab OS=Bat coronavirus...  102     7e-21
sp|P0C6F7|R1A_BC133 Replicase polyprotein 1a OS=Bat coronavirus 1...  101     9e-21
sp|K9N638|R1A_MERS1 Replicase polyprotein 1a OS=Middle East respi...  92.4    7e-18
sp|K9N7C7|R1AB_MERS1 Replicase polyprotein 1ab OS=Middle East res...  92.0    9e-18
sp|P0C6W5|R1AB_BCHK9 Replicase polyprotein 1ab OS=Bat coronavirus...  60.8    4e-08
sp|P0C6T6|R1A_BCHK9 Replicase polyprotein 1a OS=Bat coronavirus H...  60.5    4e-08
sp|P0C6V2|R1A_CVPPU Replicase polyprotein 1a OS=Porcine transmiss...  37.7    0.43 
sp|P0C6Y5|R1AB_CVPPU Replicase polyprotein 1ab OS=Porcine transmi...  37.7    0.50 
sp|P43349|TCTP_SOLTU Translationally-controlled tumor protein hom...  34.7    1.1  
sp|A0JUY4|RECA_ARTS2 Protein RecA OS=Arthrobacter sp. (strain FB2...  35.4    1.6  
sp|P54334|XKDO_BACSU Phage-like element PBSX protein XkdO OS=Baci...  35.4    2.1  
sp|Q98VG9|R1AB_FIPV Replicase polyprotein 1ab OS=Feline coronavir...  35.0    3.4  
sp|Q751L1|RL43_EREGS Large ribosomal subunit protein eL43 OS=Erem...  32.0    3.6  
sp|Q0W2Y5|RPO12_METAR DNA-directed RNA polymerase subunit Rpo12 O...  30.4    4.0  
sp|Q5UQB5|TOP1P_MIMIV DNA topoisomerase 1 type prokaryotic OS=Aca...  34.3    4.6  
sp|Q5J907|TCTP_ELAGV Translationally-controlled tumor protein hom...  32.3    8.1  
sp|P35138|RL15_BACLD Large ribosomal subunit protein uL15 OS=Baci...  31.6    9.9  


>sp|P0DTC1|R1A_SARS2 Replicase polyprotein 1a OS=Severe acute
respiratory syndrome coronavirus 2 OX=2697049 PE=1 SV=1 Length=4405 Score = 1328 bits (3437), Expect = 0.0, Method: Compositional matrix adjust. Identities = 638/638 (100%), Positives = 638/638 (100%), Gaps = 0/638 (0%) Query 1 AYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAW 60 AYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAW Sbjct 181 AYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAW 240 Query 61 YTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRI 120 YTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRI Sbjct 241 YTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRI 300 Query 121 RSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYL 180 RSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYL Sbjct 301 RSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYL 360 Query 181 PQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKC 240 PQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKC Sbjct 361 PQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKC 420 Query 241 AYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASF 300 AYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASF Sbjct 421 AYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASF 480 Query 301 SASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEA 360 SASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEA Sbjct 481 SASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEA 540 Query 361 ARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAY 420 ARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAY Sbjct 541 ARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAY 600 Query 421 ITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIV 480 ITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIV Sbjct 601 ITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIV 660 Query 481 GGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKC 540 GGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKC Sbjct 661 GGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKC 720 Query 541 VKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVG 600 VKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVG Sbjct 721 VKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVG 780 Query 601 TPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGG 638 TPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGG Sbjct 781 TPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGG 818
>sp|P0DTD1|R1AB_SARS2 Replicase polyprotein 1ab OS=Severe acute
respiratory syndrome coronavirus 2 OX=2697049 GN=rep PE=1 SV=1 Length=7096 Score = 1326 bits (3431), Expect = 0.0, Method: Compositional matrix adjust. Identities = 638/638 (100%), Positives = 638/638 (100%), Gaps = 0/638 (0%) Query 1 AYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAW 60 AYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAW Sbjct 181 AYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAW 240 Query 61 YTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRI 120 YTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRI Sbjct 241 YTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRI 300 Query 121 RSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYL 180 RSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYL Sbjct 301 RSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYL 360 Query 181 PQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKC 240 PQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKC Sbjct 361 PQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKC 420 Query 241 AYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASF 300 AYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASF Sbjct 421 AYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASF 480 Query 301 SASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEA 360 SASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEA Sbjct 481 SASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEA 540 Query 361 ARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAY 420 ARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAY Sbjct 541 ARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAY 600 Query 421 ITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIV 480 ITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIV Sbjct 601 ITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIV 660 Query 481 GGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKC 540 GGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKC Sbjct 661 GGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKC 720 Query 541 VKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVG 600 VKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVG Sbjct 721 VKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVG 780 Query 601 TPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGG 638 TPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGG Sbjct 781 TPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGG 818
>sp|P0C6F5|R1A_BC279 Replicase polyprotein 1a OS=Bat coronavirus
279/2005 OX=389167 GN=1a PE=3 SV=1 Length=4388 Score = 965 bits (2494), Expect = 0.0, Method: Compositional matrix adjust. Identities = 441/638 (69%), Positives = 530/638 (83%), Gaps = 0/638 (0%) Query 1 AYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAW 60 A+TRYVDNNFCGPDGYPLECIKDLLARAGK+ CTLSEQLD+I++KRGVYCCREHEHEI W Sbjct 181 AFTRYVDNNFCGPDGYPLECIKDLLARAGKSMCTLSEQLDYIESKRGVYCCREHEHEIVW 240 Query 61 YTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRI 120 +TERSEKSYE QTPFEIK AKKFDTF GECP FVFPLNS +K IQPRVEKKK +GFMGRI Sbjct 241 FTERSEKSYERQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRI 300 Query 121 RSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYL 180 RSVYPVA+P ECN M LSTLMKC+HC E SWQT DF+KATCE CGTENL EG TTCGYL Sbjct 301 RSVYPVATPQECNDMHLSTLMKCNHCDEVSWQTCDFLKATCEQCGTENLVCEGPTTCGYL 360 Query 181 PQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKC 240 P NAVVK+ CPAC + EVGPEHS+A+YHN S ++T LRKGGRT FGGCVF+YVGC+NK Sbjct 361 PANAVVKMPCPACQDPEVGPEHSVADYHNHSNIETRLRKGGRTKCFGGCVFAYVGCYNKR 420 Query 241 AYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASF 300 AYWVPRASANIG +HTG+ G+ E LN++L+EIL +++VNINIVGDF LNEE+AIILASF Sbjct 421 AYWVPRASANIGASHTGITGDNVETLNEDLMEILNRDRVNINIVGDFHLNEEVAIILASF 480 Query 301 SASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEA 360 SAST AFV+TVKGLDYK FK IVESCGNFKVT+G+AKKGAWNIG++KSIL+PLY F S+A Sbjct 481 SASTCAFVDTVKGLDYKTFKDIVESCGNFKVTRGRAKKGAWNIGQEKSILTPLYGFPSQA 540 Query 361 ARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAY 420 A V+RSIF+R L+TA +S+ LQ+AAITILDGIS+ SLRLIDAM++TSDL TN+++VMAY Sbjct 541 AGVIRSIFTRALDTANHSIPDLQRAAITILDGISEQSLRLIDAMVYTSDLLTNSVIVMAY 600 Query 421 ITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIV 480 +TGG+VQ +QWL+N+ GT +KLKPV W+E K G+EFLRD WEI+KF+ T +IV Sbjct 601 VTGGLVQQITQWLSNMLGTTVDKLKPVFTWVEAKLSAGIEFLRDAWEILKFLVTGVFDIV 660 Query 481 GGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKC 540 GQI + +KE V+ F ++NK L +C D +II GAKL+ LNLGE F+ SKGLYR+C Sbjct 661 KGQIQVASDNLKECVKAFLDVLNKALEMCIDQVIIAGAKLRTLNLGEVFIAQSKGLYRQC 720 Query 541 VKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVG 600 ++ +E+ LLMPL+APKE+ F EG++ T +EEVVLK G+L+ LE P ++G Sbjct 721 IRGKEQLQLLMPLRAPKEVTFFEGDSHDTVFTSEEVVLKNGELEALETPVDSFTNGAVIG 780 Query 601 TPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGG 638 TPVC+NGLMLLE+KD E+YCAL+P ++ TNN F+LKGG Sbjct 781 TPVCVNGLMLLELKDKEQYCALSPGLLATNNVFSLKGG 818
>sp|P0C6V9|R1AB_BC279 Replicase polyprotein 1ab OS=Bat coronavirus
279/2005 OX=389167 GN=rep PE=3 SV=1 Length=7079 Score = 963 bits (2489), Expect = 0.0, Method: Compositional matrix adjust. Identities = 441/638 (69%), Positives = 530/638 (83%), Gaps = 0/638 (0%) Query 1 AYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAW 60 A+TRYVDNNFCGPDGYPLECIKDLLARAGK+ CTLSEQLD+I++KRGVYCCREHEHEI W Sbjct 181 AFTRYVDNNFCGPDGYPLECIKDLLARAGKSMCTLSEQLDYIESKRGVYCCREHEHEIVW 240 Query 61 YTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRI 120 +TERSEKSYE QTPFEIK AKKFDTF GECP FVFPLNS +K IQPRVEKKK +GFMGRI Sbjct 241 FTERSEKSYERQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRI 300 Query 121 RSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYL 180 RSVYPVA+P ECN M LSTLMKC+HC E SWQT DF+KATCE CGTENL EG TTCGYL Sbjct 301 RSVYPVATPQECNDMHLSTLMKCNHCDEVSWQTCDFLKATCEQCGTENLVCEGPTTCGYL 360 Query 181 PQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKC 240 P NAVVK+ CPAC + EVGPEHS+A+YHN S ++T LRKGGRT FGGCVF+YVGC+NK Sbjct 361 PANAVVKMPCPACQDPEVGPEHSVADYHNHSNIETRLRKGGRTKCFGGCVFAYVGCYNKR 420 Query 241 AYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASF 300 AYWVPRASANIG +HTG+ G+ E LN++L+EIL +++VNINIVGDF LNEE+AIILASF Sbjct 421 AYWVPRASANIGASHTGITGDNVETLNEDLMEILNRDRVNINIVGDFHLNEEVAIILASF 480 Query 301 SASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEA 360 SAST AFV+TVKGLDYK FK IVESCGNFKVT+G+AKKGAWNIG++KSIL+PLY F S+A Sbjct 481 SASTCAFVDTVKGLDYKTFKDIVESCGNFKVTRGRAKKGAWNIGQEKSILTPLYGFPSQA 540 Query 361 ARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAY 420 A V+RSIF+R L+TA +S+ LQ+AAITILDGIS+ SLRLIDAM++TSDL TN+++VMAY Sbjct 541 AGVIRSIFTRALDTANHSIPDLQRAAITILDGISEQSLRLIDAMVYTSDLLTNSVIVMAY 600 Query 421 ITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIV 480 +TGG+VQ +QWL+N+ GT +KLKPV W+E K G+EFLRD WEI+KF+ T +IV Sbjct 601 VTGGLVQQITQWLSNMLGTTVDKLKPVFTWVEAKLSAGIEFLRDAWEILKFLVTGVFDIV 660 Query 481 GGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKC 540 GQI + +KE V+ F ++NK L +C D +II GAKL+ LNLGE F+ SKGLYR+C Sbjct 661 KGQIQVASDNLKECVKAFLDVLNKALEMCIDQVIIAGAKLRTLNLGEVFIAQSKGLYRQC 720 Query 541 VKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVG 600 ++ +E+ LLMPL+APKE+ F EG++ T +EEVVLK G+L+ LE P ++G Sbjct 721 IRGKEQLQLLMPLRAPKEVTFFEGDSHDTVFTSEEVVLKNGELEALETPVDSFTNGAVIG 780 Query 601 TPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGG 638 TPVC+NGLMLLE+KD E+YCAL+P ++ TNN F+LKGG Sbjct 781 TPVCVNGLMLLELKDKEQYCALSPGLLATNNVFSLKGG 818
>sp|P0C6U8|R1A_SARS Replicase polyprotein 1a OS=Severe acute respiratory
syndrome coronavirus OX=694009 GN=1a PE=1 SV=1 Length=4382 Score = 956 bits (2470), Expect = 0.0, Method: Compositional matrix adjust. Identities = 436/638 (68%), Positives = 529/638 (83%), Gaps = 0/638 (0%) Query 1 AYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAW 60 A TRYVDNNFCGPDGYPL+CIKD LARAGK+ CTLSEQLD+I++KRGVYCCR+HEHEIAW Sbjct 181 AVTRYVDNNFCGPDGYPLDCIKDFLARAGKSMCTLSEQLDYIESKRGVYCCRDHEHEIAW 240 Query 61 YTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRI 120 +TERS+KSYE QTPFEIK AKKFDTF GECP FVFPLNS +K IQPRVEKKK +GFMGRI Sbjct 241 FTERSDKSYEHQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRI 300 Query 121 RSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYL 180 RSVYPVASP ECN M LSTLMKC+HC E SWQT DF+KATCE CGTENL EG TTCGYL Sbjct 301 RSVYPVASPQECNNMHLSTLMKCNHCDEVSWQTCDFLKATCEHCGTENLVIEGPTTCGYL 360 Query 181 PQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKC 240 P NAVVK+ CPAC + E+GPEHS+A+YHN S ++T LRKGGRT FGGCVF+YVGC+NK Sbjct 361 PTNAVVKMPCPACQDPEIGPEHSVADYHNHSNIETRLRKGGRTRCFGGCVFAYVGCYNKR 420 Query 241 AYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASF 300 AYWVPRASA+IG HTG+ G+ E LN++LLEIL +E+VNINIVGDF LNEE+AIILASF Sbjct 421 AYWVPRASADIGSGHTGITGDNVETLNEDLLEILSRERVNINIVGDFHLNEEVAIILASF 480 Query 301 SASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEA 360 SASTSAF++T+K LDYK+FK IVESCGN+KVTKGK KGAWNIG+Q+S+L+PL F S+A Sbjct 481 SASTSAFIDTIKSLDYKSFKTIVESCGNYKVTKGKPVKGAWNIGQQRSVLTPLCGFPSQA 540 Query 361 ARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAY 420 A V+RSIF+RTL+ A +S+ LQ+AA+TILDGIS+ SLRL+DAM++TSDL TN++++MAY Sbjct 541 AGVIRSIFARTLDAANHSIPDLQRAAVTILDGISEQSLRLVDAMVYTSDLLTNSVIIMAY 600 Query 421 ITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIV 480 +TGG+VQ TSQWL+N+ GT EKL+P+ +W+E K GVEFL+D WEI+KF+ T +IV Sbjct 601 VTGGLVQQTSQWLSNLLGTTVEKLRPIFEWIEAKLSAGVEFLKDAWEILKFLITGVFDIV 660 Query 481 GGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKC 540 GQI + IK+ V+ F +VNK L +C D + I GAKL++LNLGE F+ SKGLYR+C Sbjct 661 KGQIQVASDNIKDCVKCFIDVVNKALEMCIDQVTIAGAKLRSLNLGEVFIAQSKGLYRQC 720 Query 541 VKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVG 600 ++ +E+ LLMPLKAPKE+ FLEG++ T + +EEVVLK G+L+ LE P +VG Sbjct 721 IRGKEQLQLLMPLKAPKEVTFLEGDSHDTVLTSEEVVLKNGELEALETPVDSFTNGAIVG 780 Query 601 TPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGG 638 TPVC+NGLMLLEIKD E+YCAL+P ++ TNN F LKGG Sbjct 781 TPVCVNGLMLLEIKDKEQYCALSPGLLATNNVFRLKGG 818
>sp|P0C6X7|R1AB_SARS Replicase polyprotein 1ab OS=Severe acute
respiratory syndrome coronavirus OX=694009 GN=rep PE=1 SV=1 Length=7073 Score = 954 bits (2465), Expect = 0.0, Method: Compositional matrix adjust. Identities = 436/638 (68%), Positives = 529/638 (83%), Gaps = 0/638 (0%) Query 1 AYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAW 60 A TRYVDNNFCGPDGYPL+CIKD LARAGK+ CTLSEQLD+I++KRGVYCCR+HEHEIAW Sbjct 181 AVTRYVDNNFCGPDGYPLDCIKDFLARAGKSMCTLSEQLDYIESKRGVYCCRDHEHEIAW 240 Query 61 YTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRI 120 +TERS+KSYE QTPFEIK AKKFDTF GECP FVFPLNS +K IQPRVEKKK +GFMGRI Sbjct 241 FTERSDKSYEHQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRI 300 Query 121 RSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYL 180 RSVYPVASP ECN M LSTLMKC+HC E SWQT DF+KATCE CGTENL EG TTCGYL Sbjct 301 RSVYPVASPQECNNMHLSTLMKCNHCDEVSWQTCDFLKATCEHCGTENLVIEGPTTCGYL 360 Query 181 PQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKC 240 P NAVVK+ CPAC + E+GPEHS+A+YHN S ++T LRKGGRT FGGCVF+YVGC+NK Sbjct 361 PTNAVVKMPCPACQDPEIGPEHSVADYHNHSNIETRLRKGGRTRCFGGCVFAYVGCYNKR 420 Query 241 AYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASF 300 AYWVPRASA+IG HTG+ G+ E LN++LLEIL +E+VNINIVGDF LNEE+AIILASF Sbjct 421 AYWVPRASADIGSGHTGITGDNVETLNEDLLEILSRERVNINIVGDFHLNEEVAIILASF 480 Query 301 SASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEA 360 SASTSAF++T+K LDYK+FK IVESCGN+KVTKGK KGAWNIG+Q+S+L+PL F S+A Sbjct 481 SASTSAFIDTIKSLDYKSFKTIVESCGNYKVTKGKPVKGAWNIGQQRSVLTPLCGFPSQA 540 Query 361 ARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAY 420 A V+RSIF+RTL+ A +S+ LQ+AA+TILDGIS+ SLRL+DAM++TSDL TN++++MAY Sbjct 541 AGVIRSIFARTLDAANHSIPDLQRAAVTILDGISEQSLRLVDAMVYTSDLLTNSVIIMAY 600 Query 421 ITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIV 480 +TGG+VQ TSQWL+N+ GT EKL+P+ +W+E K GVEFL+D WEI+KF+ T +IV Sbjct 601 VTGGLVQQTSQWLSNLLGTTVEKLRPIFEWIEAKLSAGVEFLKDAWEILKFLITGVFDIV 660 Query 481 GGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKC 540 GQI + IK+ V+ F +VNK L +C D + I GAKL++LNLGE F+ SKGLYR+C Sbjct 661 KGQIQVASDNIKDCVKCFIDVVNKALEMCIDQVTIAGAKLRSLNLGEVFIAQSKGLYRQC 720 Query 541 VKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVG 600 ++ +E+ LLMPLKAPKE+ FLEG++ T + +EEVVLK G+L+ LE P +VG Sbjct 721 IRGKEQLQLLMPLKAPKEVTFLEGDSHDTVLTSEEVVLKNGELEALETPVDSFTNGAIVG 780 Query 601 TPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGG 638 TPVC+NGLMLLEIKD E+YCAL+P ++ TNN F LKGG Sbjct 781 TPVCVNGLMLLEIKDKEQYCALSPGLLATNNVFRLKGG 818
>sp|P0C6F8|R1A_BCHK3 Replicase polyprotein 1a OS=Bat coronavirus
HKU3 OX=442736 GN=1a PE=3 SV=1 Length=4376 Score = 951 bits (2458), Expect = 0.0, Method: Compositional matrix adjust. Identities = 440/636 (69%), Positives = 521/636 (82%), Gaps = 0/636 (0%) Query 3 TRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAWYT 62 TRYVDNNFCGPDGYPLECIKD LARAGK+ CTLSEQLD+I++KRGVYCCREHEHEI W+T Sbjct 183 TRYVDNNFCGPDGYPLECIKDFLARAGKSMCTLSEQLDYIESKRGVYCCREHEHEIVWFT 242 Query 63 ERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRIRS 122 ERSEKSYE QTPFEIK AKKFDTF GECP FVFPLNS +K IQPRVEKKK +GFMGRIRS Sbjct 243 ERSEKSYEHQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRIRS 302 Query 123 VYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYLPQ 182 VYPVA+P ECN M LSTLMKC+HC E SWQT DF+KATCE CGTENL EG TTCGYLP Sbjct 303 VYPVATPQECNDMHLSTLMKCNHCDEVSWQTCDFLKATCEQCGTENLVCEGPTTCGYLPT 362 Query 183 NAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKCAY 242 NAVVK+ CPAC + EVGPEHS+A+YHN S ++T LRKGGRT FGGCVFSYVGC+NK AY Sbjct 363 NAVVKMPCPACQDPEVGPEHSVADYHNHSNIETRLRKGGRTKCFGGCVFSYVGCYNKRAY 422 Query 243 WVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASFSA 302 WVPRASANIG NHTG+ GE E LN++LLEIL +E+VNINIVGDF+ NEE+AIILASFSA Sbjct 423 WVPRASANIGANHTGITGENVETLNEDLLEILNRERVNINIVGDFRFNEEVAIILASFSA 482 Query 303 STSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEAAR 362 S SAF+ETVKGLDYK+FK IVESCGN+KVT GK GAWNIG+Q+SIL+PL F S+AA Sbjct 483 SPSAFIETVKGLDYKSFKVIVESCGNYKVTNGKPVTGAWNIGQQRSILTPLCGFPSQAAG 542 Query 363 VVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAYIT 422 V+RSIFSRTL+ A +S+ LQ+AA+T LDGIS+ SLRL+DAM++TSDL TN++VVMAY+T Sbjct 543 VIRSIFSRTLDAANHSILDLQRAAVTTLDGISEQSLRLVDAMVYTSDLLTNSVVVMAYVT 602 Query 423 GGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIVGG 482 GG+VQ T QWL+N+ GT +KLKPV W+E K GVEFLRD WEI+KF+ T +++ G Sbjct 603 GGLVQQTMQWLSNMLGTAVDKLKPVFTWVEAKLSAGVEFLRDAWEILKFLITGVFDVIKG 662 Query 483 QIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKCVK 542 QI IKE V+ F +VNK L +C D + I G KL+ALNLGE F+ S+GLYR+C++ Sbjct 663 QIQVATDNIKECVKIFLGVVNKALEMCLDQVTIAGTKLRALNLGEVFIAQSRGLYRQCIR 722 Query 543 SREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVGTP 602 +E+ LLMPLKAPKE+ FLEG+ T + +EEVVLK+G+L+ LE P +VGTP Sbjct 723 GKEQLQLLMPLKAPKEVTFLEGDAHDTVLTSEEVVLKSGELEALETPIDSFTSGAVVGTP 782 Query 603 VCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGG 638 VCINGLMLLE+++ E+YCAL+P ++ TNN F LKGG Sbjct 783 VCINGLMLLELENKEQYCALSPGLLATNNVFRLKGG 818
>sp|P0C6W2|R1AB_BCHK3 Replicase polyprotein 1ab OS=Bat coronavirus
HKU3 OX=442736 GN=rep PE=3 SV=1 Length=7067 Score = 949 bits (2452), Expect = 0.0, Method: Compositional matrix adjust. Identities = 440/636 (69%), Positives = 521/636 (82%), Gaps = 0/636 (0%) Query 3 TRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAWYT 62 TRYVDNNFCGPDGYPLECIKD LARAGK+ CTLSEQLD+I++KRGVYCCREHEHEI W+T Sbjct 183 TRYVDNNFCGPDGYPLECIKDFLARAGKSMCTLSEQLDYIESKRGVYCCREHEHEIVWFT 242 Query 63 ERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRIRS 122 ERSEKSYE QTPFEIK AKKFDTF GECP FVFPLNS +K IQPRVEKKK +GFMGRIRS Sbjct 243 ERSEKSYEHQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRIRS 302 Query 123 VYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYLPQ 182 VYPVA+P ECN M LSTLMKC+HC E SWQT DF+KATCE CGTENL EG TTCGYLP Sbjct 303 VYPVATPQECNDMHLSTLMKCNHCDEVSWQTCDFLKATCEQCGTENLVCEGPTTCGYLPT 362 Query 183 NAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKCAY 242 NAVVK+ CPAC + EVGPEHS+A+YHN S ++T LRKGGRT FGGCVFSYVGC+NK AY Sbjct 363 NAVVKMPCPACQDPEVGPEHSVADYHNHSNIETRLRKGGRTKCFGGCVFSYVGCYNKRAY 422 Query 243 WVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASFSA 302 WVPRASANIG NHTG+ GE E LN++LLEIL +E+VNINIVGDF+ NEE+AIILASFSA Sbjct 423 WVPRASANIGANHTGITGENVETLNEDLLEILNRERVNINIVGDFRFNEEVAIILASFSA 482 Query 303 STSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEAAR 362 S SAF+ETVKGLDYK+FK IVESCGN+KVT GK GAWNIG+Q+SIL+PL F S+AA Sbjct 483 SPSAFIETVKGLDYKSFKVIVESCGNYKVTNGKPVTGAWNIGQQRSILTPLCGFPSQAAG 542 Query 363 VVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAYIT 422 V+RSIFSRTL+ A +S+ LQ+AA+T LDGIS+ SLRL+DAM++TSDL TN++VVMAY+T Sbjct 543 VIRSIFSRTLDAANHSILDLQRAAVTTLDGISEQSLRLVDAMVYTSDLLTNSVVVMAYVT 602 Query 423 GGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIVGG 482 GG+VQ T QWL+N+ GT +KLKPV W+E K GVEFLRD WEI+KF+ T +++ G Sbjct 603 GGLVQQTMQWLSNMLGTAVDKLKPVFTWVEAKLSAGVEFLRDAWEILKFLITGVFDVIKG 662 Query 483 QIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKCVK 542 QI IKE V+ F +VNK L +C D + I G KL+ALNLGE F+ S+GLYR+C++ Sbjct 663 QIQVATDNIKECVKIFLGVVNKALEMCLDQVTIAGTKLRALNLGEVFIAQSRGLYRQCIR 722 Query 543 SREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVGTP 602 +E+ LLMPLKAPKE+ FLEG+ T + +EEVVLK+G+L+ LE P +VGTP Sbjct 723 GKEQLQLLMPLKAPKEVTFLEGDAHDTVLTSEEVVLKSGELEALETPIDSFTSGAVVGTP 782 Query 603 VCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGG 638 VCINGLMLLE+++ E+YCAL+P ++ TNN F LKGG Sbjct 783 VCINGLMLLELENKEQYCALSPGLLATNNVFRLKGG 818
>sp|P0C6T7|R1A_BCRP3 Replicase polyprotein 1a OS=Bat coronavirus
Rp3/2004 OX=349344 GN=1a PE=3 SV=1 Length=4380 Score = 941 bits (2431), Expect = 0.0, Method: Compositional matrix adjust. Identities = 432/638 (68%), Positives = 523/638 (82%), Gaps = 0/638 (0%) Query 1 AYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAW 60 A TRYVDNNFCGPDGYPLECIKDLLARAGK+ CTLSEQLD+I++KRGVYCCR+H HEIAW Sbjct 181 ALTRYVDNNFCGPDGYPLECIKDLLARAGKSMCTLSEQLDYIESKRGVYCCRDHGHEIAW 240 Query 61 YTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRI 120 +TERS+KSYE QTPFEIK AKKFDTF GECP FVFPLNS +K IQPRVEKKK +GFMGRI Sbjct 241 FTERSDKSYEHQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRI 300 Query 121 RSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYL 180 RSVYPVA+P ECN M LSTLMKC+HC E SWQT DF+KATCE CGTENL EG TCGYL Sbjct 301 RSVYPVATPQECNNMHLSTLMKCNHCDEVSWQTCDFLKATCEQCGTENLVSEGPNTCGYL 360 Query 181 PQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKC 240 P NAVVK+ CPAC + E+GPEHS A+YHN S ++T LRKGGRT FGGCVF+YVGC+NK Sbjct 361 PTNAVVKMPCPACQDPEIGPEHSAADYHNHSNIETRLRKGGRTRCFGGCVFAYVGCYNKR 420 Query 241 AYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASF 300 AYWVPRASA+IG HTG+ G+ E LN++LLEIL +E+VNINIVGDF+LNEE+AIILASF Sbjct 421 AYWVPRASADIGSGHTGITGDNVETLNEDLLEILSRERVNINIVGDFQLNEEVAIILASF 480 Query 301 SASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEA 360 SASTSAF++T+K LDYK+FK IVESCGN+KVTKGK KGAWNIG+ +S+L+PL F S+A Sbjct 481 SASTSAFIDTIKSLDYKSFKTIVESCGNYKVTKGKPIKGAWNIGQHRSVLTPLCGFPSQA 540 Query 361 ARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAY 420 A V+RSIFSRTL+ A +S+ LQ+AA+TILD IS+ SLRL+DAM++TS+L TN++++MAY Sbjct 541 AGVIRSIFSRTLDAANHSIPDLQRAAVTILDSISEQSLRLVDAMVYTSNLLTNSVIIMAY 600 Query 421 ITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIV 480 +TGG+VQ TSQWL+N+ T EKL+P+ W+E K GVEFL+D WEI+KF+ T +IV Sbjct 601 VTGGLVQQTSQWLSNLLDTTVEKLRPIFAWIEAKLSAGVEFLKDAWEILKFLITGVFDIV 660 Query 481 GGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKC 540 GQI + IK+ V+ F +VNK L +C D + I GAKL++LNLGE F+ SKGLYR+C Sbjct 661 KGQIQVASDNIKDCVKCFVDVVNKALEMCIDQVTIAGAKLRSLNLGEVFIAQSKGLYRQC 720 Query 541 VKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVG 600 ++ +E+ LLMPLKAPKE+ FLEG++ T + +EEVVLK G+L+ LE P +VG Sbjct 721 IRGKEQLQLLMPLKAPKEVTFLEGDSHDTVLTSEEVVLKNGELEALETPVDSFTNGAVVG 780 Query 601 TPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGG 638 TPVCINGLMLLEIK E+YCAL+P ++ TNN F LKGG Sbjct 781 TPVCINGLMLLEIKANEQYCALSPGLLATNNVFRLKGG 818
>sp|P0C6W6|R1AB_BCRP3 Replicase polyprotein 1ab OS=Bat coronavirus
Rp3/2004 OX=349344 GN=rep PE=3 SV=1 Length=7071 Score = 939 bits (2426), Expect = 0.0, Method: Compositional matrix adjust. Identities = 432/638 (68%), Positives = 523/638 (82%), Gaps = 0/638 (0%) Query 1 AYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAW 60 A TRYVDNNFCGPDGYPLECIKDLLARAGK+ CTLSEQLD+I++KRGVYCCR+H HEIAW Sbjct 181 ALTRYVDNNFCGPDGYPLECIKDLLARAGKSMCTLSEQLDYIESKRGVYCCRDHGHEIAW 240 Query 61 YTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRI 120 +TERS+KSYE QTPFEIK AKKFDTF GECP FVFPLNS +K IQPRVEKKK +GFMGRI Sbjct 241 FTERSDKSYEHQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRI 300 Query 121 RSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYL 180 RSVYPVA+P ECN M LSTLMKC+HC E SWQT DF+KATCE CGTENL EG TCGYL Sbjct 301 RSVYPVATPQECNNMHLSTLMKCNHCDEVSWQTCDFLKATCEQCGTENLVSEGPNTCGYL 360 Query 181 PQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKC 240 P NAVVK+ CPAC + E+GPEHS A+YHN S ++T LRKGGRT FGGCVF+YVGC+NK Sbjct 361 PTNAVVKMPCPACQDPEIGPEHSAADYHNHSNIETRLRKGGRTRCFGGCVFAYVGCYNKR 420 Query 241 AYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASF 300 AYWVPRASA+IG HTG+ G+ E LN++LLEIL +E+VNINIVGDF+LNEE+AIILASF Sbjct 421 AYWVPRASADIGSGHTGITGDNVETLNEDLLEILSRERVNINIVGDFQLNEEVAIILASF 480 Query 301 SASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEA 360 SASTSAF++T+K LDYK+FK IVESCGN+KVTKGK KGAWNIG+ +S+L+PL F S+A Sbjct 481 SASTSAFIDTIKSLDYKSFKTIVESCGNYKVTKGKPIKGAWNIGQHRSVLTPLCGFPSQA 540 Query 361 ARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAY 420 A V+RSIFSRTL+ A +S+ LQ+AA+TILD IS+ SLRL+DAM++TS+L TN++++MAY Sbjct 541 AGVIRSIFSRTLDAANHSIPDLQRAAVTILDSISEQSLRLVDAMVYTSNLLTNSVIIMAY 600 Query 421 ITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIV 480 +TGG+VQ TSQWL+N+ T EKL+P+ W+E K GVEFL+D WEI+KF+ T +IV Sbjct 601 VTGGLVQQTSQWLSNLLDTTVEKLRPIFAWIEAKLSAGVEFLKDAWEILKFLITGVFDIV 660 Query 481 GGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKC 540 GQI + IK+ V+ F +VNK L +C D + I GAKL++LNLGE F+ SKGLYR+C Sbjct 661 KGQIQVASDNIKDCVKCFVDVVNKALEMCIDQVTIAGAKLRSLNLGEVFIAQSKGLYRQC 720 Query 541 VKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVG 600 ++ +E+ LLMPLKAPKE+ FLEG++ T + +EEVVLK G+L+ LE P +VG Sbjct 721 IRGKEQLQLLMPLKAPKEVTFLEGDSHDTVLTSEEVVLKNGELEALETPVDSFTNGAVVG 780 Query 601 TPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGG 638 TPVCINGLMLLEIK E+YCAL+P ++ TNN F LKGG Sbjct 781 TPVCINGLMLLEIKANEQYCALSPGLLATNNVFRLKGG 818
>sp|P0C6W3|R1AB_BCHK4 Replicase polyprotein 1ab OS=Bat coronavirus
HKU4 OX=694007 GN=rep PE=1 SV=1 Length=7119 Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 154/670 (23%), Positives = 278/670 (41%), Gaps = 59/670 (9%) Query 6 VDNNFCGPDGYPLECIKDLLARAGKASCTLSE-QLDF---IDTKRGVYCCREHEHEIAWY 61 +D CG +G P+ ++A+ G TL++ ++D +D+ R + + + + W Sbjct 200 IDQYMCGKNGKPIADYAKIVAKEGLT--TLADIEVDVKSRMDSDRFI-VLNKKLYRVVWN 256 Query 62 TERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRIR 121 R Y QT F I + D P F + S I + P ++ F + R Sbjct 257 VTRRNVPYPKQTAFTIVSVVQCDD-KDSVPEHTFTIGSQILMVSP-LKATNNKNFNLKQR 314 Query 122 SVYPVASPNECNQ---MCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKE-GATTC 177 +Y + Q + S + C+ CG +W TG+ ++ CG + + Sbjct 315 LLYTFYGKDAVQQPGYIYHSAYVDCNACGRGTWCTGNAIQGFACDCGANYSANDVDLQSS 374 Query 178 GYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGR--TIAFGGCVFSYVG 235 G +P+NA+ CP +N HS A+ +N K + GG+ T+ FGG V++Y+G Sbjct 375 GLVPRNALFLANCPCANNGAC--SHSAAQVYNILDGKACVEVGGKSFTLTFGGVVYAYMG 432 Query 236 CHNKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLE----ILQKEKVNINIVGDFKLNE 291 C + Y+VPRA + + + G G D ++E L+K + ++N F L E Sbjct 433 CCDGTMYFVPRAKSCVS-RIGDAIFTGCTGTWDKVVETANLFLEKAQRSLNFCQQFALTE 491 Query 292 EIAIILASFSASTSAFVETVKGLDYKAFKQIVESCGN--FKVTKGKAKKGAWNIGE---- 345 ++LA S +TS F E +++++ + N F VT G + A NIG Sbjct 492 ---VVLAILSGTTSTFEELRDLCHNASYEKVRDHLVNHGFVVTIGDYIRDAINIGANGVC 548 Query 346 QKSILSPLYAFA--SEAARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDA 403 +I +P AF E+ + V +I + N L + I+ + Y + D Sbjct 549 NATINAPFIAFTGLGESFKKVSAI---PWKICSNLKSALDYYSSNIMFRVFPYDIP-CDV 604 Query 404 MMFTSDLATNNLVVMAYITGGVVQLTSQWLTNIFGTVYE----KLKPVLDWLEEKFKEGV 459 F L + +A + V++ + + GTV L L+ + Sbjct 605 SNFVELLLDCGKLTVA-TSYFVLRYLDEKFDTVLGTVSSACQTALSSFLNACVAASRATA 663 Query 460 EFLRDGWEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAK 519 F+ D +++ K + V A+ + VQ +++K + L ++ G K Sbjct 664 GFINDMFKLFKVLMHKLYVYTSCGYVAVAEHSSKIVQQVLDIMSKAMKLLHTNVSWAGTK 723 Query 520 LKALNL-GETFVTHSKGLYRKCVKSREET-----GLLMPLKAPKEIIFL-----EGETLP 568 L A+ G + + G Y C+ ++ +T L++P K+ + + +T+ Sbjct 724 LSAIIYEGREALLFNSGTYF-CLSTKAKTLQGQMNLVLPGDYNKKTLGILDPVPNADTID 782 Query 569 TEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVCINGLMLLEIKDTEKYCALAPNMMV 628 + V + G L +PT+E + +VG V ++ + + +D E Y L N V Sbjct 783 VNANSTVVDVVHGQL----EPTNEHGPSMIVGNYVLVSDKLFVRTEDEEFY-PLCTNGKV 837 Query 629 TNNTFTLKGG 638 + F LKGG Sbjct 838 VSTLFRLKGG 847
>sp|P0C6T4|R1A_BCHK4 Replicase polyprotein 1a OS=Bat coronavirus
HKU4 OX=694007 GN=1a PE=1 SV=1 Length=4434 Score = 109 bits (272), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 154/670 (23%), Positives = 278/670 (41%), Gaps = 59/670 (9%) Query 6 VDNNFCGPDGYPLECIKDLLARAGKASCTLSE-QLDF---IDTKRGVYCCREHEHEIAWY 61 +D CG +G P+ ++A+ G TL++ ++D +D+ R + + + + W Sbjct 200 IDQYMCGKNGKPIADYAKIVAKEGLT--TLADIEVDVKSRMDSDRFI-VLNKKLYRVVWN 256 Query 62 TERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRIR 121 R Y QT F I + D P F + S I + P ++ F + R Sbjct 257 VTRRNVPYPKQTAFTIVSVVQCDD-KDSVPEHTFTIGSQILMVSP-LKATNNKNFNLKQR 314 Query 122 SVYPVASPNECNQ---MCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKE-GATTC 177 +Y + Q + S + C+ CG +W TG+ ++ CG + + Sbjct 315 LLYTFYGKDAVQQPGYIYHSAYVDCNACGRGTWCTGNAIQGFACDCGANYSANDVDLQSS 374 Query 178 GYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGR--TIAFGGCVFSYVG 235 G +P+NA+ CP +N HS A+ +N K + GG+ T+ FGG V++Y+G Sbjct 375 GLVPRNALFLANCPCANNGAC--SHSAAQVYNILDGKACVEVGGKSFTLTFGGVVYAYMG 432 Query 236 CHNKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLE----ILQKEKVNINIVGDFKLNE 291 C + Y+VPRA + + + G G D ++E L+K + ++N F L E Sbjct 433 CCDGTMYFVPRAKSCVS-RIGDAIFTGCTGTWDKVVETANLFLEKAQRSLNFCQQFALTE 491 Query 292 EIAIILASFSASTSAFVETVKGLDYKAFKQIVESCGN--FKVTKGKAKKGAWNIGE---- 345 ++LA S +TS F E +++++ + N F VT G + A NIG Sbjct 492 ---VVLAILSGTTSTFEELRDLCHNASYEKVRDHLVNHGFVVTIGDYIRDAINIGANGVC 548 Query 346 QKSILSPLYAFA--SEAARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDA 403 +I +P AF E+ + V +I + N L + I+ + Y + D Sbjct 549 NATINAPFIAFTGLGESFKKVSAI---PWKICSNLKSALDYYSSNIMFRVFPYDIP-CDV 604 Query 404 MMFTSDLATNNLVVMAYITGGVVQLTSQWLTNIFGTVYE----KLKPVLDWLEEKFKEGV 459 F L + +A + V++ + + GTV L L+ + Sbjct 605 SNFVELLLDCGKLTVA-TSYFVLRYLDEKFDTVLGTVSSACQTALSSFLNACVAASRATA 663 Query 460 EFLRDGWEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAK 519 F+ D +++ K + V A+ + VQ +++K + L ++ G K Sbjct 664 GFINDMFKLFKVLMHKLYVYTSCGYVAVAEHSSKIVQQVLDIMSKAMKLLHTNVSWAGTK 723 Query 520 LKALNL-GETFVTHSKGLYRKCVKSREET-----GLLMPLKAPKEIIFL-----EGETLP 568 L A+ G + + G Y C+ ++ +T L++P K+ + + +T+ Sbjct 724 LSAIIYEGREALLFNSGTYF-CLSTKAKTLQGQMNLVLPGDYNKKTLGILDPVPNADTID 782 Query 569 TEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVCINGLMLLEIKDTEKYCALAPNMMV 628 + V + G L +PT+E + +VG V ++ + + +D E Y L N V Sbjct 783 VNANSTVVDVVHGQL----EPTNEHGPSMIVGNYVLVSDKLFVRTEDEEFY-PLCTNGKV 837 Query 629 TNNTFTLKGG 638 + F LKGG Sbjct 838 VSTLFRLKGG 847
>sp|P0C6W4|R1AB_BCHK5 Replicase polyprotein 1ab OS=Bat coronavirus
HKU5 OX=694008 GN=rep PE=3 SV=1 Length=7182 Score = 109 bits (272), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 150/674 (22%), Positives = 285/674 (42%), Gaps = 63/674 (9%) Query 6 VDNNFCGPDGYPLECIKDLLARAG--KASCTLSEQLDFIDTKRGVYCCREHEHEIAWYTE 63 +D CG +G P+ L+A G K + +E D+ R + + + I W + Sbjct 200 IDQYMCGKNGKPIAEFAALMASEGITKLADVEAEVKSRTDSDRYI-VFKNKLYRIVWNVQ 258 Query 64 RSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRIRSV 123 R + +Y Q+ F + + DT + P F + S I+ I P + + R + Sbjct 259 RKDVAYSKQSAFTMNSIVQLDTME-DVPRHSFTIGSEIQVIAPSTAVQANGHLNLKQRLL 317 Query 124 YPV---ASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKE-GATTCGY 179 Y + +E N + S + C CG+ SW TG+ V+ CG + + G Sbjct 318 YAFYGKQAVSEPNYIYHSAYVDCTSCGKGSWLTGNAVQGFACDCGAHYCANDVDLQSSGL 377 Query 180 LPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRT--IAFGGCVFSYVGCH 237 + +NAV+ CP + E +H+L + + K + G+T + +GG +++Y+GC Sbjct 378 VRKNAVLLTTCPCNKDGEC--KHTLPQLVSMMTDKCDVEVVGKTFILTYGGVIYAYMGCS 435 Query 238 NKCAYWVPRASANIG----CNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEI 293 +++PRA + + TG G S+ L L++ + IN V +F L E + Sbjct 436 GGTMHFIPRAKSCVSKIGDAIFTGCTGTWSKVCETANL-FLERAQHAINFVNEFVLTETV 494 Query 294 AIILASFSASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGE----QKSI 349 +L+ ++S + + ++ + + G + VT G +G N+G ++ Sbjct 495 VALLSGTTSSIEELRDLCRNATFEKVRDYLTPRG-WIVTMGSYIEGVINVGAAGVCNAAL 553 Query 350 LSPLY-------AFASEAARVVR--SIFSRTLETAQNSV--RVLQKAAITILDGISQYSL 398 +P +F AA + S TL+ +S+ RV I ++ Y+ Sbjct 554 NAPFIVLSGLGESFKKVAATPWKLCSSLRETLDHYADSITYRVF---PYDIPCDVTDYTA 610 Query 399 RLIDAMMFTSDLATNNLVVMAYITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEG 458 L+D + T A V Y+ V QLT+ +F + + + +K Sbjct 611 LLLDCAVLTGASA---YFVARYVDEKVEQLTNL----VFSSCQSAVAAFVQACMSTYKAT 663 Query 459 VEFLRDGWEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGA 518 +F+ D + ++K +S V + ++ F +++K + L ++ G+ Sbjct 664 AKFISDMFTLIKVVSERLYVYTSVGFVVVGDYSSQLLKQFMHILSKAMQLLHTTVSWAGS 723 Query 519 KLKAL--NLGETFVTHSKGLYRKCVKS-----REETGLLMPLK-APKEIIFLE----GET 566 KL ++ N ++ V S Y CV + +++ L++P + K+I LE T Sbjct 724 KLPSVVYNGRDSLVFPSGTYY--CVSTQGRSLQDQFDLVIPGDLSKKQIGILEPTPNSTT 781 Query 567 LPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVCI-NGLMLLEIKDTEK-YCALAP 624 + ++ T V + G L+P ++ + E V VG V I N + + ++D+E + L Sbjct 782 VDKKINTNVVEVVVGQLEPTKEHSPELV----VGDYVIISNKIFVRSVEDSETVFYPLCT 837 Query 625 NMMVTNNTFTLKGG 638 + + F LKGG Sbjct 838 DGKIVPTLFRLKGG 851
>sp|P0C6T5|R1A_BCHK5 Replicase polyprotein 1a OS=Bat coronavirus
HKU5 OX=694008 GN=1a PE=3 SV=1 Length=4481 Score = 108 bits (271), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 150/674 (22%), Positives = 285/674 (42%), Gaps = 63/674 (9%) Query 6 VDNNFCGPDGYPLECIKDLLARAG--KASCTLSEQLDFIDTKRGVYCCREHEHEIAWYTE 63 +D CG +G P+ L+A G K + +E D+ R + + + I W + Sbjct 200 IDQYMCGKNGKPIAEFAALMASEGITKLADVEAEVKSRTDSDRYI-VFKNKLYRIVWNVQ 258 Query 64 RSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRIRSV 123 R + +Y Q+ F + + DT + P F + S I+ I P + + R + Sbjct 259 RKDVAYSKQSAFTMNSIVQLDTME-DVPRHSFTIGSEIQVIAPSTAVQANGHLNLKQRLL 317 Query 124 YPV---ASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKE-GATTCGY 179 Y + +E N + S + C CG+ SW TG+ V+ CG + + G Sbjct 318 YAFYGKQAVSEPNYIYHSAYVDCTSCGKGSWLTGNAVQGFACDCGAHYCANDVDLQSSGL 377 Query 180 LPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRT--IAFGGCVFSYVGCH 237 + +NAV+ CP + E +H+L + + K + G+T + +GG +++Y+GC Sbjct 378 VRKNAVLLTTCPCNKDGEC--KHTLPQLVSMMTDKCDVEVVGKTFILTYGGVIYAYMGCS 435 Query 238 NKCAYWVPRASANIG----CNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEI 293 +++PRA + + TG G S+ L L++ + IN V +F L E + Sbjct 436 GGTMHFIPRAKSCVSKIGDAIFTGCTGTWSKVCETANL-FLERAQHAINFVNEFVLTETV 494 Query 294 AIILASFSASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGE----QKSI 349 +L+ ++S + + ++ + + G + VT G +G N+G ++ Sbjct 495 VALLSGTTSSIEELRDLCRNATFEKVRDYLTPRG-WIVTMGSYIEGVINVGAAGVCNAAL 553 Query 350 LSPLY-------AFASEAARVVR--SIFSRTLETAQNSV--RVLQKAAITILDGISQYSL 398 +P +F AA + S TL+ +S+ RV I ++ Y+ Sbjct 554 NAPFIVLSGLGESFKKVAATPWKLCSSLRETLDHYADSITYRVF---PYDIPCDVTDYTA 610 Query 399 RLIDAMMFTSDLATNNLVVMAYITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEG 458 L+D + T A V Y+ V QLT+ +F + + + +K Sbjct 611 LLLDCAVLTGASA---YFVARYVDEKVEQLTNL----VFSSCQSAVAAFVQACMSTYKAT 663 Query 459 VEFLRDGWEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGA 518 +F+ D + ++K +S V + ++ F +++K + L ++ G+ Sbjct 664 AKFISDMFTLIKVVSERLYVYTSVGFVVVGDYSSQLLKQFMHILSKAMQLLHTTVSWAGS 723 Query 519 KLKAL--NLGETFVTHSKGLYRKCVKS-----REETGLLMPLK-APKEIIFLE----GET 566 KL ++ N ++ V S Y CV + +++ L++P + K+I LE T Sbjct 724 KLPSVVYNGRDSLVFPSGTYY--CVSTQGRSLQDQFDLVIPGDLSKKQIGILEPTPNSTT 781 Query 567 LPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVCI-NGLMLLEIKDTEK-YCALAP 624 + ++ T V + G L+P ++ + E V VG V I N + + ++D+E + L Sbjct 782 VDKKINTNVVEVVVGQLEPTKEHSPELV----VGDYVIISNKIFVRSVEDSETVFYPLCT 837 Query 625 NMMVTNNTFTLKGG 638 + + F LKGG Sbjct 838 DGKIVPTLFRLKGG 851
>sp|P0C6W1|R1AB_BC133 Replicase polyprotein 1ab OS=Bat coronavirus
133/2005 OX=389230 GN=rep PE=3 SV=1 Length=7126 Score = 102 bits (253), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 149/668 (22%), Positives = 272/668 (41%), Gaps = 55/668 (8%) Query 6 VDNNFCGPDGYPLECIKDLLARAGKASCTLSE-QLDF---IDTKRGVYCCREHEHEIAWY 61 VD CG +G P+ ++A+ G TL++ ++D +D+ R + + + + W Sbjct 200 VDQYMCGKNGKPIADYAKIVAKEGLT--TLADIEVDVKSRMDSDRFI-VLNKKLYRVVWN 256 Query 62 TERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQP--RVEKKKLDGFMGR 119 R Y QT F + + D P F + S I + P K + Sbjct 257 VTRRNVPYSKQTAFTVVSVIQCDD-KESVPEHTFTIGSQILMVSPLKATNNKNFNLKQRL 315 Query 120 IRSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKE-GATTCG 178 + + Y + + + S + C+ CG +W TG+ ++ CG + + G Sbjct 316 LHTFYGKEAVQQPGYIYHSAYVDCNACGRGTWCTGNAIQGFACDCGANYSANDVDLQSSG 375 Query 179 YLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGR--TIAFGGCVFSYVGC 236 +P+NA+ CP +N H+ A+ ++ K + GG+ T+ FGG V++Y+GC Sbjct 376 LVPKNALFLANCPCANNGAC--SHNAAQVYSILDGKACVEVGGKSFTLTFGGVVYAYMGC 433 Query 237 HNKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLE----ILQKEKVNINIVGDFKLNEE 292 + Y+VPRA + + + G G D ++E L+K + ++N F L E Sbjct 434 CDGTMYFVPRAKSCVS-RIGDAIFTGCTGTWDKVVETANLFLEKAQHSLNFCQQFALTE- 491 Query 293 IAIILASFSASTSAFVETVKGLDYKAFKQIVESCGN--FKVTKGKAKKGAWNIGE----Q 346 ++LA S +TS F E +++++ + N F VT G + A NIG Sbjct 492 --VVLAILSGTTSTFEELRDLCHNASYEKVRDHLVNHGFVVTIGDYIRDAINIGANGVCN 549 Query 347 KSILSPLYAFA--SEAARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAM 404 +I +P AF E+ + V +I + N L I+ + Y + D Sbjct 550 ATINAPFIAFTGLGESFKKVAAI---PWKICSNLKSALDYYCSNIMFRVFPYDIP-CDVN 605 Query 405 MFTSDLATNNLVVMAYITGGVVQLTSQWLTNIFGTVYE----KLKPVLDWLEEKFKEGVE 460 F L + +A + V++ + + GTV L L+ + Sbjct 606 DFVELLLDCGKLTVA-TSYFVLRYLDEKFDTVLGTVSNACQTALSSFLNACVAASRATAG 664 Query 461 FLRDGWEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKL 520 F+ D +++ K + V A+ + VQ +++K + L ++ G KL Sbjct 665 FISDMFKLFKVLMHKLYVYTSCGYVAVAEHSSKIVQQVLDIMSKAMKLLHTNVSWAGTKL 724 Query 521 KALNL-GETFVTHSKGLY----RKCVKSREETGLLMPLKAPKEIIFL-----EGETLPTE 570 A+ G + + G Y K +++ L++P K+ + + +T+ Sbjct 725 SAIIYEGREALLFNSGTYFCLSTKAKTLQDQMNLVLPGDYNKKTLGILDPVPNADTIDVT 784 Query 571 VLTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVCINGLMLLEIKDTEKYCALAPNMMVTN 630 + V + G L +PT+E + +VG V ++ + + D E Y L N V + Sbjct 785 ANSTVVDVVHGQL----EPTNEHGPSMIVGNYVLVSDKLFVRTDDEEFY-PLCINGKVVS 839 Query 631 NTFTLKGG 638 F LKGG Sbjct 840 TLFRLKGG 847
>sp|P0C6F7|R1A_BC133 Replicase polyprotein 1a OS=Bat coronavirus
133/2005 OX=389230 GN=1a PE=3 SV=1 Length=4441 Score = 101 bits (252), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 149/668 (22%), Positives = 272/668 (41%), Gaps = 55/668 (8%) Query 6 VDNNFCGPDGYPLECIKDLLARAGKASCTLSE-QLDF---IDTKRGVYCCREHEHEIAWY 61 VD CG +G P+ ++A+ G TL++ ++D +D+ R + + + + W Sbjct 200 VDQYMCGKNGKPIADYAKIVAKEGLT--TLADIEVDVKSRMDSDRFI-VLNKKLYRVVWN 256 Query 62 TERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQP--RVEKKKLDGFMGR 119 R Y QT F + + D P F + S I + P K + Sbjct 257 VTRRNVPYSKQTAFTVVSVIQCDD-KESVPEHTFTIGSQILMVSPLKATNNKNFNLKQRL 315 Query 120 IRSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKE-GATTCG 178 + + Y + + + S + C+ CG +W TG+ ++ CG + + G Sbjct 316 LHTFYGKEAVQQPGYIYHSAYVDCNACGRGTWCTGNAIQGFACDCGANYSANDVDLQSSG 375 Query 179 YLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGR--TIAFGGCVFSYVGC 236 +P+NA+ CP +N H+ A+ ++ K + GG+ T+ FGG V++Y+GC Sbjct 376 LVPKNALFLANCPCANNGAC--SHNAAQVYSILDGKACVEVGGKSFTLTFGGVVYAYMGC 433 Query 237 HNKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLE----ILQKEKVNINIVGDFKLNEE 292 + Y+VPRA + + + G G D ++E L+K + ++N F L E Sbjct 434 CDGTMYFVPRAKSCVS-RIGDAIFTGCTGTWDKVVETANLFLEKAQHSLNFCQQFALTE- 491 Query 293 IAIILASFSASTSAFVETVKGLDYKAFKQIVESCGN--FKVTKGKAKKGAWNIGE----Q 346 ++LA S +TS F E +++++ + N F VT G + A NIG Sbjct 492 --VVLAILSGTTSTFEELRDLCHNASYEKVRDHLVNHGFVVTIGDYIRDAINIGANGVCN 549 Query 347 KSILSPLYAFA--SEAARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAM 404 +I +P AF E+ + V +I + N L I+ + Y + D Sbjct 550 ATINAPFIAFTGLGESFKKVAAI---PWKICSNLKSALDYYCSNIMFRVFPYDIP-CDVN 605 Query 405 MFTSDLATNNLVVMAYITGGVVQLTSQWLTNIFGTVYE----KLKPVLDWLEEKFKEGVE 460 F L + +A + V++ + + GTV L L+ + Sbjct 606 DFVELLLDCGKLTVA-TSYFVLRYLDEKFDTVLGTVSNACQTALSSFLNACVAASRATAG 664 Query 461 FLRDGWEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKL 520 F+ D +++ K + V A+ + VQ +++K + L ++ G KL Sbjct 665 FISDMFKLFKVLMHKLYVYTSCGYVAVAEHSSKIVQQVLDIMSKAMKLLHTNVSWAGTKL 724 Query 521 KALNL-GETFVTHSKGLY----RKCVKSREETGLLMPLKAPKEIIFL-----EGETLPTE 570 A+ G + + G Y K +++ L++P K+ + + +T+ Sbjct 725 SAIIYEGREALLFNSGTYFCLSTKAKTLQDQMNLVLPGDYNKKTLGILDPVPNADTIDVT 784 Query 571 VLTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVCINGLMLLEIKDTEKYCALAPNMMVTN 630 + V + G L +PT+E + +VG V ++ + + D E Y L N V + Sbjct 785 ANSTVVDVVHGQL----EPTNEHGPSMIVGNYVLVSDKLFVRTDDEEFY-PLCINGKVVS 839 Query 631 NTFTLKGG 638 F LKGG Sbjct 840 TLFRLKGG 847
>sp|K9N638|R1A_MERS1 Replicase polyprotein 1a OS=Middle East respiratory
syndrome-related coronavirus (isolate United Kingdom/H123990006/2012) OX=1263720 GN=1a PE=1 SV=1 Length=4391 Score = 92.4 bits (228), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 119/556 (21%), Positives = 222/556 (40%), Gaps = 61/556 (11%) Query 6 VDNNFCGPDGYPLECIKDLLARAG-----KASCTLSEQLDFIDTKRGVYCCREHEHEIAW 60 VD CG DG P+ L+A+ G ++ + D G + + + + W Sbjct 198 VDQYMCGVDGKPISAYAFLMAKDGITKLADVEADVAARAD----DEGFITLKNNLYRLVW 253 Query 61 YTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPR----------VEK 110 + ER + Y Q+ F I + D P++ F L I T+ PR +++ Sbjct 254 HVERKDVPYPKQSIFTINSVVQKDGVENTPPHY-FTLGCKILTLTPRNKWSGVSDLSLKQ 312 Query 111 KKLDGFMGRIRSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLT 170 K L F G+ S + S ++C CG SW TG+ ++ CG Sbjct 313 KLLYTFYGK-------ESLENPTYIYHSAFIECGSCGNDSWLTGNAIQGFACGCGASYTA 365 Query 171 KE-GATTCGYLPQNAVVKIYCPACHNSEVGP--EHSLAE---YHNESGLKTILRKGGRTI 224 + + G + NA++ CP +HS+A+ Y +E I T+ Sbjct 366 NDVEVQSSGMIKPNALLCATCPFAKGDSCSSNCKHSVAQLVSYLSER-CNVIADSKSFTL 424 Query 225 AFGGCVFSYVGCHNKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLEI----LQKEKVN 280 FGG ++Y GC Y+VPRA + + + G G + + +I L++ + + Sbjct 425 IFGGVAYAYFGCEEGTMYFVPRAKSVVSRIGDSIF-TGCTGSWNKVTQIANMFLEQTQHS 483 Query 281 INIVGDFKLNEEIAIILASFSASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGA 340 +N VG+F +N+ + IL+ + + + +KG+ + + + VT G A Sbjct 484 LNFVGEFVVNDVVLAILSGTTTNVDKIRQLLKGVTLDKLRDYLADY-DVAVTAGPFMDNA 542 Query 341 WNIG----EQKSILSPLYAFA--SEAARVVRSIFSRTLETAQNSV-----RVLQKAAITI 389 N+G + +I +P E+ + V +I + + ++++ VL + Sbjct 543 INVGGTGLQYAAITAPYVVLTGLGESFKKVATIPYKVCNSVKDTLTYYAHSVLYRVFPYD 602 Query 390 LD-GISQYSLRLIDAMMFTSDLATNNLVVMAYITGGVVQ-LTSQWLTNIFGTVYEKLKPV 447 +D G+S +S L D + DL+ V Y ++Q T +++ I + + + Sbjct 603 MDSGVSSFSELLFDCV----DLS----VASTYFLVRLLQDKTGDFMSTIITSCQTAVSKL 654 Query 448 LDWLEEKFKEGVEFLRDGWEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLA 507 LD E + FL D + + A V ++ V+ L+NK + Sbjct 655 LDTCFEATEATFNFLLDLAGLFRIFLRNAYVYTSQGFVVVNGKVSTLVKQVLDLLNKGMQ 714 Query 508 LCADSIIIGGAKLKAL 523 L + G+ + A+ Sbjct 715 LLHTKVSWAGSNISAV 730
>sp|K9N7C7|R1AB_MERS1 Replicase polyprotein 1ab OS=Middle East
respiratory syndrome-related coronavirus (isolate United Kingdom/H123990006/2012) OX=1263720 GN=rep PE=1 SV=1 Length=7078 Score = 92.0 bits (227), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 122/559 (22%), Positives = 223/559 (40%), Gaps = 67/559 (12%) Query 6 VDNNFCGPDGYPLECIKDLLARAG-----KASCTLSEQLD---FIDTKRGVYCCREHEHE 57 VD CG DG P+ L+A+ G ++ + D FI K +Y Sbjct 198 VDQYMCGVDGKPISAYAFLMAKDGITKLADVEADVAARADDEGFITLKNNLY-------R 250 Query 58 IAWYTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPR---------- 107 + W+ ER + Y Q+ F I + D P++ F L I T+ PR Sbjct 251 LVWHVERKDVPYPKQSIFTINSVVQKDGVENTPPHY-FTLGCKILTLTPRNKWSGVSDLS 309 Query 108 VEKKKLDGFMGRIRSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTE 167 +++K L F G+ S + S ++C CG SW TG+ ++ CG Sbjct 310 LKQKLLYTFYGK-------ESLENPTYIYHSAFIECGSCGNDSWLTGNAIQGFACGCGAS 362 Query 168 NLTKE-GATTCGYLPQNAVVKIYCPACHNSEVGP--EHSLAE---YHNESGLKTILRKGG 221 + + G + NA++ CP +HS+A+ Y +E I Sbjct 363 YTANDVEVQSSGMIKPNALLCATCPFAKGDSCSSNCKHSVAQLVSYLSER-CNVIADSKS 421 Query 222 RTIAFGGCVFSYVGCHNKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLEI----LQKE 277 T+ FGG ++Y GC Y+VPRA + + + G G + + +I L++ Sbjct 422 FTLIFGGVAYAYFGCEEGTMYFVPRAKSVVSRIGDSIF-TGCTGSWNKVTQIANMFLEQT 480 Query 278 KVNINIVGDFKLNEEIAIILASFSASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAK 337 + ++N VG+F +N+ + IL+ + + + +KG+ + + + VT G Sbjct 481 QHSLNFVGEFVVNDVVLAILSGTTTNVDKIRQLLKGVTLDKLRDYLADY-DVAVTAGPFM 539 Query 338 KGAWNIG----EQKSILSPLYAFA--SEAARVVRSIFSRTLETAQNSV-----RVLQKAA 386 A N+G + +I +P E+ + V +I + + ++++ VL + Sbjct 540 DNAINVGGTGLQYAAITAPYVVLTGLGESFKKVATIPYKVCNSVKDTLTYYAHSVLYRVF 599 Query 387 ITILD-GISQYSLRLIDAMMFTSDLATNNLVVMAYITGGVVQ-LTSQWLTNIFGTVYEKL 444 +D G+S +S L D + DL+ V Y ++Q T +++ I + + Sbjct 600 PYDMDSGVSSFSELLFDCV----DLS----VASTYFLVRLLQDKTGDFMSTIITSCQTAV 651 Query 445 KPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNK 504 +LD E + FL D + + A V ++ V+ L+NK Sbjct 652 SKLLDTCFEATEATFNFLLDLAGLFRIFLRNAYVYTSQGFVVVNGKVSTLVKQVLDLLNK 711 Query 505 FLALCADSIIIGGAKLKAL 523 + L + G+ + A+ Sbjct 712 GMQLLHTKVSWAGSNISAV 730
>sp|P0C6W5|R1AB_BCHK9 Replicase polyprotein 1ab OS=Bat coronavirus
HKU9 OX=694006 GN=rep PE=1 SV=1 Length=6930 Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 99/457 (22%), Positives = 174/457 (38%), Gaps = 78/457 (17%) Query 141 MKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYLPQNAVVKIYCPACHNSEVGP 200 +KC +C W + CG E + ++C V+K P C Sbjct 310 LKCSYCDYYGWTPLKDIGTVNCLCGAE---FQLTSSCVDAESAGVIK---PGC------- 356 Query 201 EHSLAEYHNESGLKTILRKGGRT-IAFGGCVFSYVGCHNKCAYWVPRASANIGCNHTGVV 259 + G++ I G RT ++FGG ++S +G N WVPRA + + H+G V Sbjct 357 ---VMLLDKSPGMRLI--PGNRTYVSFGGAIWSPIGKVNGVTVWVPRAYSIVAGEHSGAV 411 Query 260 GEGSE-GLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASFSASTSA----FVETVKGL 314 G G +N L+E L + I + D N A +A+ T A VE+++GL Sbjct 412 GSGDTVAINKELVEYLIE---GIRVDADTLDNPTCATFIANLDCDTKAPVVHTVESLQGL 468 Query 315 DYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEAARVVRSIFSRTLET 374 C K+ G E + L A+ + A ++ SRT E Sbjct 469 -----------CLANKIMLGDKPLPT---DEFHPFIVGL-AYHVQRACWYGALASRTFEA 513 Query 375 AQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAYITGGVVQLTSQWLT 434 ++ VR ++ +Q+ ++ + N V +AY TG V ++ + Sbjct 514 FRDFVRTEEER-------FAQFFGKVCAPI--------NGCVYLAYTTGRVTLFSAYQVL 558 Query 435 N------------IFGTVYEKLKPVLDWLEEKFKEGVEFLRDGW----EIVKFISTCACE 478 N + V + LKP+L+W+ +K + + W E + + Sbjct 559 NTAIAKSKDAFGGVAAIVVDMLKPILEWVLKK----MSIAKGAWLPYAEGLLALFKAQFT 614 Query 479 IVGGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYR 538 +V G+ + + L+ ++ S+ G K+ AL G + KG+ Sbjct 615 VVKGKFQFLRASLNSKCHSLCDLLTTIMSKLLTSVKWAGCKVDALYTGTYYYFSRKGVLT 674 Query 539 KCVKSREETGLLM-PLKAPKEIIFLEGETLPTEVLTE 574 + + GLL+ P + E+ L+G+ LT+ Sbjct 675 EVQLCAKRLGLLLTPKQQKMEVEVLDGDFDAPVTLTD 711
>sp|P0C6T6|R1A_BCHK9 Replicase polyprotein 1a OS=Bat coronavirus
HKU9 OX=694006 GN=1a PE=3 SV=1 Length=4248 Score = 60.5 bits (145), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 99/457 (22%), Positives = 174/457 (38%), Gaps = 78/457 (17%) Query 141 MKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYLPQNAVVKIYCPACHNSEVGP 200 +KC +C W + CG E + ++C V+K P C Sbjct 310 LKCSYCDYYGWTPLKDIGTVNCLCGAE---FQLTSSCVDAESAGVIK---PGC------- 356 Query 201 EHSLAEYHNESGLKTILRKGGRT-IAFGGCVFSYVGCHNKCAYWVPRASANIGCNHTGVV 259 + G++ I G RT ++FGG ++S +G N WVPRA + + H+G V Sbjct 357 ---VMLLDKSPGMRLI--PGNRTYVSFGGAIWSPIGKVNGVTVWVPRAYSIVAGEHSGAV 411 Query 260 GEGSE-GLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASFSASTSA----FVETVKGL 314 G G +N L+E L + I + D N A +A+ T A VE+++GL Sbjct 412 GSGDTVAINKELVEYLIE---GIRVDADTLDNPTCATFIANLDCDTKAPVVHTVESLQGL 468 Query 315 DYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEAARVVRSIFSRTLET 374 C K+ G E + L A+ + A ++ SRT E Sbjct 469 -----------CLANKIMLGDKPLPT---DEFHPFIVGL-AYHVQRACWYGALASRTFEA 513 Query 375 AQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAYITGGVVQLTSQWLT 434 ++ VR ++ +Q+ ++ + N V +AY TG V ++ + Sbjct 514 FRDFVRTEEER-------FAQFFGKVCAPI--------NGCVYLAYTTGRVTLFSAYQVL 558 Query 435 N------------IFGTVYEKLKPVLDWLEEKFKEGVEFLRDGW----EIVKFISTCACE 478 N + V + LKP+L+W+ +K + + W E + + Sbjct 559 NTAIAKSKDAFGGVAAIVVDMLKPILEWVLKK----MSIAKGAWLPYAEGLLALFKAQFT 614 Query 479 IVGGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYR 538 +V G+ + + L+ ++ S+ G K+ AL G + KG+ Sbjct 615 VVKGKFQFLRASLNSKCHSLCDLLTTIMSKLLTSVKWAGCKVDALYTGTYYYFSRKGVLT 674 Query 539 KCVKSREETGLLM-PLKAPKEIIFLEGETLPTEVLTE 574 + + GLL+ P + E+ L+G+ LT+ Sbjct 675 EVQLCAKRLGLLLTPKQQKMEVEVLDGDFDAPVTLTD 711
>sp|P0C6V2|R1A_CVPPU Replicase polyprotein 1a OS=Porcine transmissible
gastroenteritis coronavirus (strain Purdue) OX=11151 GN=1a PE=1 SV=1 Length=4017 Score = 37.7 bits (86), Expect = 0.43, Method: Compositional matrix adjust. Identities = 94/413 (23%), Positives = 134/413 (32%), Gaps = 95/413 (23%) Query 5 YVDNNFCGPDGYPL--ECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAWYT 62 YVD CG DG P+ KD D I+ + Y C AW T Sbjct 113 YVDQYMCGADGKPVIEGDFKDYFGDE-----------DIIEFEGEEYHC-------AWTT 154 Query 63 ERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRIRS 122 R EK QT F I+ + +N + P+ P N + + P V+K + Sbjct 155 VRDEKPLNQQTLFTIQEIQ----YNLDIPH-KLP-NCATRHVAPPVKKNSKIVLSEDYKK 208 Query 123 VY-----PVASPNECNQMCLSTL------MKCDHCGETSWQTGDFVKATCEFCGTENLTK 171 +Y P +C C TL ++C CG S GD+ CG K Sbjct 209 LYDIFGSPFMGNGDCLSKCFDTLHFIAATLRCP-CGSESSGVGDWTGFKTACCGLSGKVK 267 Query 172 EGATTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVF 231 G T P +AVV T + G F CV Sbjct 268 -GVTLGDIKPGDAVV----------------------------TSMSAGKGVKFFANCVL 298 Query 232 SYVGCHNKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNIN-----IVGD 286 Y G + W + + T V G EG ++ ++ K V + I GD Sbjct 299 QYAGDVEGVSIW--KVIKTFTVDET-VCTPGFEGELNDFIKPESKSLVACSVKRAFITGD 355 Query 287 FKLNEEIAIILASFSASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQ 346 II ST+ F GL +K V+ CG V AW + E+ Sbjct 356 IDDAVHDCIITGKLDLSTNLFGNV--GLLFKKTPWFVQKCGALFV-------DAWKVVEE 406 Query 347 ---------KSILSPLYAFASEAARVVRSIFSRTLETAQNSVRVLQKAAITIL 390 K I + + + A +V + T N V+ L + +L Sbjct 407 LCGSLTLTYKQIYEVVASLCTSAFTIVN--YKPTFVVPDNRVKDLVDKCVKVL 457
>sp|P0C6Y5|R1AB_CVPPU Replicase polyprotein 1ab OS=Porcine transmissible
gastroenteritis coronavirus (strain Purdue) OX=11151 GN=rep PE=1 SV=1 Length=6684 Score = 37.7 bits (86), Expect = 0.50, Method: Compositional matrix adjust. Identities = 94/413 (23%), Positives = 134/413 (32%), Gaps = 95/413 (23%) Query 5 YVDNNFCGPDGYPL--ECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAWYT 62 YVD CG DG P+ KD D I+ + Y C AW T Sbjct 113 YVDQYMCGADGKPVIEGDFKDYFGDE-----------DIIEFEGEEYHC-------AWTT 154 Query 63 ERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRIRS 122 R EK QT F I+ + +N + P+ P N + + P V+K + Sbjct 155 VRDEKPLNQQTLFTIQEIQ----YNLDIPH-KLP-NCATRHVAPPVKKNSKIVLSEDYKK 208 Query 123 VY-----PVASPNECNQMCLSTL------MKCDHCGETSWQTGDFVKATCEFCGTENLTK 171 +Y P +C C TL ++C CG S GD+ CG K Sbjct 209 LYDIFGSPFMGNGDCLSKCFDTLHFIAATLRCP-CGSESSGVGDWTGFKTACCGLSGKVK 267 Query 172 EGATTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVF 231 G T P +AVV T + G F CV Sbjct 268 -GVTLGDIKPGDAVV----------------------------TSMSAGKGVKFFANCVL 298 Query 232 SYVGCHNKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNIN-----IVGD 286 Y G + W + + T V G EG ++ ++ K V + I GD Sbjct 299 QYAGDVEGVSIW--KVIKTFTVDET-VCTPGFEGELNDFIKPESKSLVACSVKRAFITGD 355 Query 287 FKLNEEIAIILASFSASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQ 346 II ST+ F GL +K V+ CG V AW + E+ Sbjct 356 IDDAVHDCIITGKLDLSTNLFGNV--GLLFKKTPWFVQKCGALFV-------DAWKVVEE 406 Query 347 ---------KSILSPLYAFASEAARVVRSIFSRTLETAQNSVRVLQKAAITIL 390 K I + + + A +V + T N V+ L + +L Sbjct 407 LCGSLTLTYKQIYEVVASLCTSAFTIVN--YKPTFVVPDNRVKDLVDKCVKVL 457
>sp|P43349|TCTP_SOLTU Translationally-controlled tumor protein
homolog OS=Solanum tuberosum OX=4113 GN=TCTP PE=2 SV=2 Length=168 Score = 34.7 bits (78), Expect = 1.1, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 13/99 (13%) Query 243 WVPRASA--NIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASF 300 WV + + NIG N + G EG++D +++ ++IV F+L E+ A F Sbjct 35 WVVQGAVDVNIGANPSAEGGGEDEGVDDQAVKV-------VDIVDTFRLQEQPAFDKKQF 87 Query 301 SASTSAFVET----VKGLDYKAFKQIVESCGNFKVTKGK 335 +++ ++G +AFK+ +ES F ++K K Sbjct 88 VTYIKRYIKNLTPKLEGEAQEAFKKNIESATKFLLSKLK 126
>sp|A0JUY4|RECA_ARTS2 Protein RecA OS=Arthrobacter sp. (strain
FB24) OX=290399 GN=recA PE=3 SV=1 Length=351 Score = 35.4 bits (80), Expect = 1.6, Method: Compositional matrix adjust. Identities = 22/92 (24%), Positives = 39/92 (42%), Gaps = 1/92 (1%) Query 127 ASPNECNQMCLSTLMKCDHCGETS-WQTGDFVKATCEFCGTENLTKEGATTCGYLPQNAV 185 A+P+ + + G+ S + GD V+A E T ++ + A G LP+ V Sbjct 3 AAPDRQKALDAALAQIDKQFGKGSVMRLGDEVRAPIEVIPTGSIALDVALGIGGLPRGRV 62 Query 186 VKIYCPACHNSEVGPEHSLAEYHNESGLKTIL 217 V+IY P H++A + G+ + Sbjct 63 VEIYGPESSGKTTVALHAVANAQRQGGIAAFI 94
>sp|P54334|XKDO_BACSU Phage-like element PBSX protein XkdO OS=Bacillus
subtilis (strain 168) OX=224308 GN=xkdO PE=4 SV=2 Length=1332 Score = 35.4 bits (80), Expect = 2.1, Method: Compositional matrix adjust. Identities = 30/104 (29%), Positives = 49/104 (47%), Gaps = 15/104 (14%) Query 430 SQWL-TNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIVGGQIVTCA 488 S W N++ + +K++ + ++EKF + +F D W+ I T E V +V + Sbjct 653 SNWFYDNVWNPIVKKVEDIKTSIKEKFDDARKFFEDAWD---GIETWFNEHVKDPLVKVS 709 Query 489 KEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTH 532 ++I E Q F L DS +GG K ++ GE VTH Sbjct 710 EKIAEKFQWLFDL--------KDS--VGGFVAKVIHRGEE-VTH 742
>sp|Q98VG9|R1AB_FIPV Replicase polyprotein 1ab OS=Feline coronavirus
(strain FIPV WSU-79/1146) OX=33734 GN=rep PE=1 SV=2 Length=6709 Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust. Identities = 50/192 (26%), Positives = 68/192 (35%), Gaps = 33/192 (17%) Query 5 YVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAWYTER 64 YVD CG DG P+ E D+ + V E+ AW T R Sbjct 113 YVDQYMCGADGKPV---------------IEGEFKDYFGDE-DVIIYEGEEYHCAWLTVR 156 Query 65 SEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRIRSVY 124 EK QT I+ + +N + P+ P N I+ + P V+K R +Y Sbjct 157 DEKPLWQQTLLTIREIQ----YNLDIPH-KLP-NCAIREVAPPVKKNSKVVLSEEYRKLY 210 Query 125 PV-ASPNECNQMCLSTLMKCDH---------CGETSWQTGDFVKATCEFCGTENLTKEGA 174 + SP N L+T H CG S GD+ CG K G Sbjct 211 DIFGSPFMGNGDSLNTCFDSLHFIAATLKCPCGAESSGVGDWTGFKTACCGLHGKVK-GV 269 Query 175 TTCGYLPQNAVV 186 T P +A+V Sbjct 270 TLGAVKPGDAIV 281
>sp|Q751L1|RL43_EREGS Large ribosomal subunit protein eL43 OS=Eremothecium
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=RPL43 PE=3 SV=1 Length=92 Score = 32.0 bits (71), Expect = 3.6, Method: Composition-based stats. Identities = 19/52 (37%), Positives = 26/52 (50%), Gaps = 3/52 (6%) Query 326 CGNFKVTKGKAKKGAWNIGE-QKSILSPLYAFASEAARVVRSIFSRTLETAQ 376 CG V +G A G WN +K++ Y F++ AA VRS R E A+ Sbjct 42 CGKKAVKRGAA--GIWNCSSCKKTVAGGAYTFSTAAAATVRSTIRRLREMAE 91
>sp|Q0W2Y5|RPO12_METAR DNA-directed RNA polymerase subunit Rpo12
OS=Methanocella arvoryzae (strain DSM 22066 / NBRC 105507 / MRE50) OX=351160 GN=rpo12 PE=3 SV=1 Length=45 Score = 30.4 bits (67), Expect = 4.0, Method: Composition-based stats. Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 0/40 (0%) Query 142 KCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYLP 181 KC HC +T D C++CG L KE T +P Sbjct 4 KCAHCKQTVEVDKDMKGVRCQYCGHRILIKERPTAIKRVP 43
>sp|Q5UQB5|TOP1P_MIMIV DNA topoisomerase 1 type prokaryotic OS=Acanthamoeba
polyphaga mimivirus OX=212035 GN=TOP1P PE=1 SV=1 Length=854 Score = 34.3 bits (77), Expect = 4.6, Method: Compositional matrix adjust. Identities = 27/105 (26%), Positives = 52/105 (50%), Gaps = 13/105 (12%) Query 353 LYAFASEAARVVRSIFSRT---LETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSD 409 +Y+ SE + + ++ T L +N V IT+ D + +Y +D FT++ Sbjct 522 IYSIKSENKKHIMEVYEDTDTILLGKENKKIVPTNLGITVNDFLMKYFPEFLD-YKFTAN 580 Query 410 LATNNLVVMAYITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEK 454 + T+ + Y++ G T W+ +I Y+KLKP++D L ++ Sbjct 581 METD----LDYVSTG----TKNWV-DIVQDFYDKLKPIVDELSKQ 616
>sp|Q5J907|TCTP_ELAGV Translationally-controlled tumor protein
homolog OS=Elaeis guineensis var. tenera OX=51953 GN=TCTP PE=2 SV=1 Length=168 Score = 32.3 bits (72), Expect = 8.1, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 51/114 (45%), Gaps = 18/114 (16%) Query 231 FSYVGCHNKCAY-----WVPRASAN--IGCNHTGVVGEGSEGLNDNLLEILQKEKVNINI 283 F Y HN + WV + + N IG N + GE EG++D +++ ++I Sbjct 18 FPYKEIHNGMLWEVEGKWVIQGAVNVDIGANPSAEGGEEDEGVDDQAVKV-------VDI 70 Query 284 VGDFKLNEEIAIILASFSASTSAFVETVK-GLDYKA---FKQIVESCGNFKVTK 333 V F+L E+ A F +++ + LD + FK+ +E F ++K Sbjct 71 VDTFRLQEQPAFDKKQFVTFMKRYIKNLTPKLDAEKQELFKKHIEGATKFLLSK 124
>sp|P35138|RL15_BACLD Large ribosomal subunit protein uL15 OS=Bacillus
licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / CCUG 7422 / NBRC 12200 / NCIMB 9375 / NCTC 10341 / NRRL NRS-1264 / Gibson 46) OX=279010 GN=rplO PE=3 SV=2 Length=146 Score = 31.6 bits (70), Expect = 9.9, Method: Composition-based stats. Identities = 19/56 (34%), Positives = 30/56 (54%), Gaps = 2/56 (4%) Query 260 GEGSEGLNDNLLE--ILQKEKVNINIVGDFKLNEEIAIILASFSASTSAFVETVKG 313 EG+E + LLE ++ K K + I+GD KL +++ + FSAS +E G Sbjct 86 AEGTEVTPELLLETGVISKLKSGVKILGDGKLEKKLTVKANKFSASAKQAIEAAGG 141 Lambda K H a alpha 0.319 0.136 0.409 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 69775623360 Results from round 2 Query= YP_009725298.1 nsp2 [Severe acute respiratory syndrome coronavirus 2] Length=638 Score E Sequences producing significant alignments: (Bits) Value Sequences used in model and found again: sp|P0C6X7|R1AB_SARS Replicase polyprotein 1ab OS=Severe acute res... 931 0.0 sp|P0C6V9|R1AB_BC279 Replicase polyprotein 1ab OS=Bat coronavirus... 930 0.0 sp|P0C6U8|R1A_SARS Replicase polyprotein 1a OS=Severe acute respi... 928 0.0 sp|P0C6F5|R1A_BC279 Replicase polyprotein 1a OS=Bat coronavirus 2... 928 0.0 sp|P0C6W2|R1AB_BCHK3 Replicase polyprotein 1ab OS=Bat coronavirus... 925 0.0 sp|P0C6F8|R1A_BCHK3 Replicase polyprotein 1a OS=Bat coronavirus H... 922 0.0 sp|P0C6W6|R1AB_BCRP3 Replicase polyprotein 1ab OS=Bat coronavirus... 913 0.0 sp|P0C6T7|R1A_BCRP3 Replicase polyprotein 1a OS=Bat coronavirus R... 911 0.0 sp|P0DTD1|R1AB_SARS2 Replicase polyprotein 1ab OS=Severe acute re... 883 0.0 sp|P0DTC1|R1A_SARS2 Replicase polyprotein 1a OS=Severe acute resp... 880 0.0 sp|P0C6W3|R1AB_BCHK4 Replicase polyprotein 1ab OS=Bat coronavirus... 710 0.0 sp|P0C6T4|R1A_BCHK4 Replicase polyprotein 1a OS=Bat coronavirus H... 709 0.0 sp|P0C6W1|R1AB_BC133 Replicase polyprotein 1ab OS=Bat coronavirus... 709 0.0 sp|P0C6F7|R1A_BC133 Replicase polyprotein 1a OS=Bat coronavirus 1... 709 0.0 sp|P0C6W4|R1AB_BCHK5 Replicase polyprotein 1ab OS=Bat coronavirus... 661 0.0 sp|P0C6T5|R1A_BCHK5 Replicase polyprotein 1a OS=Bat coronavirus H... 660 0.0 sp|K9N7C7|R1AB_MERS1 Replicase polyprotein 1ab OS=Middle East res... 604 0.0 sp|K9N638|R1A_MERS1 Replicase polyprotein 1a OS=Middle East respi... 604 0.0 sp|P0C6T6|R1A_BCHK9 Replicase polyprotein 1a OS=Bat coronavirus H... 387 7e-117 sp|P0C6W5|R1AB_BCHK9 Replicase polyprotein 1ab OS=Bat coronavirus... 387 1e-116 Sequences not found previously or not previously below threshold: sp|P0C6W7|R1AB_CVBEN Replicase polyprotein 1ab OS=Bovine coronavi... 81.0 3e-14 sp|P0C6W8|R1AB_CVBLU Replicase polyprotein 1ab OS=Bovine coronavi... 81.0 3e-14 sp|P0C6T8|R1A_CVBEN Replicase polyprotein 1a OS=Bovine coronaviru... 80.6 3e-14 sp|P0C6T9|R1A_CVBLU Replicase polyprotein 1a OS=Bovine coronaviru... 80.2 4e-14 sp|P0C6W9|R1AB_CVBM Replicase polyprotein 1ab OS=Bovine coronavir... 80.6 4e-14 sp|P0C6U0|R1A_CVBM Replicase polyprotein 1a OS=Bovine coronavirus... 79.8 5e-14 sp|P0C6X6|R1AB_CVHOC Replicase polyprotein 1ab OS=Human coronavir... 77.9 2e-13 sp|P0C6U7|R1A_CVHOC Replicase polyprotein 1a OS=Human coronavirus... 77.5 3e-13 sp|P0C6X0|R1AB_CVBQ Replicase polyprotein 1ab OS=Bovine coronavir... 76.7 5e-13 sp|P0C6U1|R1A_CVBQ Replicase polyprotein 1a OS=Bovine coronavirus... 76.3 6e-13 sp|P0C6Y5|R1AB_CVPPU Replicase polyprotein 1ab OS=Porcine transmi... 67.9 2e-10 sp|P0C6V2|R1A_CVPPU Replicase polyprotein 1a OS=Porcine transmiss... 67.9 3e-10 sp|P0C6X8|R1AB_CVM2 Replicase polyprotein 1ab OS=Murine coronavir... 65.9 1e-09 sp|P0C6Y4|R1AB_PEDV7 Replicase polyprotein 1ab OS=Porcine epidemi... 65.6 1e-09 sp|P0C6V6|R1A_PEDV7 Replicase polyprotein 1a OS=Porcine epidemic ... 65.6 1e-09 sp|P0C6U9|R1A_CVM2 Replicase polyprotein 1a OS=Murine coronavirus... 65.2 2e-09 sp|P0C6Y0|R1AB_CVMJH Replicase polyprotein 1ab OS=Murine coronavi... 64.4 3e-09 sp|P0C6V1|R1A_CVMJH Replicase polyprotein 1a OS=Murine coronaviru... 64.0 4e-09 sp|P0C6X2|R1AB_CVHN1 Replicase polyprotein 1ab OS=Human coronavir... 62.5 1e-08 sp|P0C6U3|R1A_CVHN1 Replicase polyprotein 1a OS=Human coronavirus... 62.5 1e-08 sp|P0C6U4|R1A_CVHN2 Replicase polyprotein 1a OS=Human coronavirus... 61.3 3e-08 sp|P0C6X3|R1AB_CVHN2 Replicase polyprotein 1ab OS=Human coronavir... 61.3 3e-08 sp|Q98VG9|R1AB_FIPV Replicase polyprotein 1ab OS=Feline coronavir... 60.2 6e-08 sp|P0C6X4|R1AB_CVHN5 Replicase polyprotein 1ab OS=Human coronavir... 59.4 1e-07 sp|P0C6U5|R1A_CVHN5 Replicase polyprotein 1a OS=Human coronavirus... 59.4 1e-07 sp|P0C6X5|R1AB_CVHNL Replicase polyprotein 1ab OS=Human coronavir... 57.9 3e-07 sp|P0C6U6|R1A_CVHNL Replicase polyprotein 1a OS=Human coronavirus... 57.9 3e-07 sp|P0C6X9|R1AB_CVMA5 Replicase polyprotein 1ab OS=Murine coronavi... 56.7 6e-07 sp|P0C6V0|R1A_CVMA5 Replicase polyprotein 1a OS=Murine coronaviru... 56.3 9e-07 sp|P0C6X1|R1AB_CVH22 Replicase polyprotein 1ab OS=Human coronavir... 48.6 2e-04 sp|P0C6U2|R1A_CVH22 Replicase polyprotein 1a OS=Human coronavirus... 48.6 2e-04 sp|P0C6W0|R1AB_BC512 Replicase polyprotein 1ab OS=Bat coronavirus... 42.4 0.014 sp|P0C6F6|R1A_BC512 Replicase polyprotein 1a OS=Bat coronavirus 5... 42.4 0.015 sp|Q3C251|ARGJ_CITLA Arginine biosynthesis bifunctional protein A... 40.9 0.032 sp|Q9KIP9|AGAS_ECOLX D-galactosamine-6-phosphate deaminase AgaS O... 35.1 2.2 sp|Q6P6T1|C1S_RAT Complement C1s subcomponent OS=Rattus norvegicu... 34.4 4.1 sp|Q9ZUR7|ARGJ_ARATH Arginine biosynthesis bifunctional protein A... 34.4 4.1 sp|Q18823|LAM2_CAEEL Laminin-like protein lam-2 OS=Caenorhabditis... 34.4 4.2 sp|Q9Y7Q9|YCX2_SCHPO Probable metabolite transporter C2H8.02 OS=S... 34.0 5.6 sp|P42907|AGAS_ECOLI Putative D-galactosamine-6-phosphate deamina... 33.2 7.3 sp|Q8U221|SYM_PYRFU Methionine--tRNA ligase OS=Pyrococcus furiosu... 33.6 7.9 sp|Q1LVF0|LAMC1_DANRE Laminin subunit gamma-1 OS=Danio rerio OX=7... 33.2 9.2
>sp|P0C6X7|R1AB_SARS Replicase polyprotein 1ab OS=Severe acute
respiratory syndrome coronavirus OX=694009 GN=rep PE=1 SV=1 Length=7073 Score = 931 bits (2405), Expect = 0.0, Method: Composition-based stats. Identities = 436/638 (68%), Positives = 529/638 (83%), Gaps = 0/638 (0%) Query 1 AYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAW 60 A TRYVDNNFCGPDGYPL+CIKD LARAGK+ CTLSEQLD+I++KRGVYCCR+HEHEIAW Sbjct 181 AVTRYVDNNFCGPDGYPLDCIKDFLARAGKSMCTLSEQLDYIESKRGVYCCRDHEHEIAW 240 Query 61 YTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRI 120 +TERS+KSYE QTPFEIK AKKFDTF GECP FVFPLNS +K IQPRVEKKK +GFMGRI Sbjct 241 FTERSDKSYEHQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRI 300 Query 121 RSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYL 180 RSVYPVASP ECN M LSTLMKC+HC E SWQT DF+KATCE CGTENL EG TTCGYL Sbjct 301 RSVYPVASPQECNNMHLSTLMKCNHCDEVSWQTCDFLKATCEHCGTENLVIEGPTTCGYL 360 Query 181 PQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKC 240 P NAVVK+ CPAC + E+GPEHS+A+YHN S ++T LRKGGRT FGGCVF+YVGC+NK Sbjct 361 PTNAVVKMPCPACQDPEIGPEHSVADYHNHSNIETRLRKGGRTRCFGGCVFAYVGCYNKR 420 Query 241 AYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASF 300 AYWVPRASA+IG HTG+ G+ E LN++LLEIL +E+VNINIVGDF LNEE+AIILASF Sbjct 421 AYWVPRASADIGSGHTGITGDNVETLNEDLLEILSRERVNINIVGDFHLNEEVAIILASF 480 Query 301 SASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEA 360 SASTSAF++T+K LDYK+FK IVESCGN+KVTKGK KGAWNIG+Q+S+L+PL F S+A Sbjct 481 SASTSAFIDTIKSLDYKSFKTIVESCGNYKVTKGKPVKGAWNIGQQRSVLTPLCGFPSQA 540 Query 361 ARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAY 420 A V+RSIF+RTL+ A +S+ LQ+AA+TILDGIS+ SLRL+DAM++TSDL TN++++MAY Sbjct 541 AGVIRSIFARTLDAANHSIPDLQRAAVTILDGISEQSLRLVDAMVYTSDLLTNSVIIMAY 600 Query 421 ITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIV 480 +TGG+VQ TSQWL+N+ GT EKL+P+ +W+E K GVEFL+D WEI+KF+ T +IV Sbjct 601 VTGGLVQQTSQWLSNLLGTTVEKLRPIFEWIEAKLSAGVEFLKDAWEILKFLITGVFDIV 660 Query 481 GGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKC 540 GQI + IK+ V+ F +VNK L +C D + I GAKL++LNLGE F+ SKGLYR+C Sbjct 661 KGQIQVASDNIKDCVKCFIDVVNKALEMCIDQVTIAGAKLRSLNLGEVFIAQSKGLYRQC 720 Query 541 VKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVG 600 ++ +E+ LLMPLKAPKE+ FLEG++ T + +EEVVLK G+L+ LE P +VG Sbjct 721 IRGKEQLQLLMPLKAPKEVTFLEGDSHDTVLTSEEVVLKNGELEALETPVDSFTNGAIVG 780 Query 601 TPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGG 638 TPVC+NGLMLLEIKD E+YCAL+P ++ TNN F LKGG Sbjct 781 TPVCVNGLMLLEIKDKEQYCALSPGLLATNNVFRLKGG 818
>sp|P0C6V9|R1AB_BC279 Replicase polyprotein 1ab OS=Bat coronavirus
279/2005 OX=389167 GN=rep PE=3 SV=1 Length=7079 Score = 930 bits (2403), Expect = 0.0, Method: Composition-based stats. Identities = 441/638 (69%), Positives = 530/638 (83%), Gaps = 0/638 (0%) Query 1 AYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAW 60 A+TRYVDNNFCGPDGYPLECIKDLLARAGK+ CTLSEQLD+I++KRGVYCCREHEHEI W Sbjct 181 AFTRYVDNNFCGPDGYPLECIKDLLARAGKSMCTLSEQLDYIESKRGVYCCREHEHEIVW 240 Query 61 YTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRI 120 +TERSEKSYE QTPFEIK AKKFDTF GECP FVFPLNS +K IQPRVEKKK +GFMGRI Sbjct 241 FTERSEKSYERQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRI 300 Query 121 RSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYL 180 RSVYPVA+P ECN M LSTLMKC+HC E SWQT DF+KATCE CGTENL EG TTCGYL Sbjct 301 RSVYPVATPQECNDMHLSTLMKCNHCDEVSWQTCDFLKATCEQCGTENLVCEGPTTCGYL 360 Query 181 PQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKC 240 P NAVVK+ CPAC + EVGPEHS+A+YHN S ++T LRKGGRT FGGCVF+YVGC+NK Sbjct 361 PANAVVKMPCPACQDPEVGPEHSVADYHNHSNIETRLRKGGRTKCFGGCVFAYVGCYNKR 420 Query 241 AYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASF 300 AYWVPRASANIG +HTG+ G+ E LN++L+EIL +++VNINIVGDF LNEE+AIILASF Sbjct 421 AYWVPRASANIGASHTGITGDNVETLNEDLMEILNRDRVNINIVGDFHLNEEVAIILASF 480 Query 301 SASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEA 360 SAST AFV+TVKGLDYK FK IVESCGNFKVT+G+AKKGAWNIG++KSIL+PLY F S+A Sbjct 481 SASTCAFVDTVKGLDYKTFKDIVESCGNFKVTRGRAKKGAWNIGQEKSILTPLYGFPSQA 540 Query 361 ARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAY 420 A V+RSIF+R L+TA +S+ LQ+AAITILDGIS+ SLRLIDAM++TSDL TN+++VMAY Sbjct 541 AGVIRSIFTRALDTANHSIPDLQRAAITILDGISEQSLRLIDAMVYTSDLLTNSVIVMAY 600 Query 421 ITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIV 480 +TGG+VQ +QWL+N+ GT +KLKPV W+E K G+EFLRD WEI+KF+ T +IV Sbjct 601 VTGGLVQQITQWLSNMLGTTVDKLKPVFTWVEAKLSAGIEFLRDAWEILKFLVTGVFDIV 660 Query 481 GGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKC 540 GQI + +KE V+ F ++NK L +C D +II GAKL+ LNLGE F+ SKGLYR+C Sbjct 661 KGQIQVASDNLKECVKAFLDVLNKALEMCIDQVIIAGAKLRTLNLGEVFIAQSKGLYRQC 720 Query 541 VKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVG 600 ++ +E+ LLMPL+APKE+ F EG++ T +EEVVLK G+L+ LE P ++G Sbjct 721 IRGKEQLQLLMPLRAPKEVTFFEGDSHDTVFTSEEVVLKNGELEALETPVDSFTNGAVIG 780 Query 601 TPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGG 638 TPVC+NGLMLLE+KD E+YCAL+P ++ TNN F+LKGG Sbjct 781 TPVCVNGLMLLELKDKEQYCALSPGLLATNNVFSLKGG 818
>sp|P0C6U8|R1A_SARS Replicase polyprotein 1a OS=Severe acute respiratory
syndrome coronavirus OX=694009 GN=1a PE=1 SV=1 Length=4382 Score = 928 bits (2399), Expect = 0.0, Method: Composition-based stats. Identities = 436/638 (68%), Positives = 529/638 (83%), Gaps = 0/638 (0%) Query 1 AYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAW 60 A TRYVDNNFCGPDGYPL+CIKD LARAGK+ CTLSEQLD+I++KRGVYCCR+HEHEIAW Sbjct 181 AVTRYVDNNFCGPDGYPLDCIKDFLARAGKSMCTLSEQLDYIESKRGVYCCRDHEHEIAW 240 Query 61 YTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRI 120 +TERS+KSYE QTPFEIK AKKFDTF GECP FVFPLNS +K IQPRVEKKK +GFMGRI Sbjct 241 FTERSDKSYEHQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRI 300 Query 121 RSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYL 180 RSVYPVASP ECN M LSTLMKC+HC E SWQT DF+KATCE CGTENL EG TTCGYL Sbjct 301 RSVYPVASPQECNNMHLSTLMKCNHCDEVSWQTCDFLKATCEHCGTENLVIEGPTTCGYL 360 Query 181 PQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKC 240 P NAVVK+ CPAC + E+GPEHS+A+YHN S ++T LRKGGRT FGGCVF+YVGC+NK Sbjct 361 PTNAVVKMPCPACQDPEIGPEHSVADYHNHSNIETRLRKGGRTRCFGGCVFAYVGCYNKR 420 Query 241 AYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASF 300 AYWVPRASA+IG HTG+ G+ E LN++LLEIL +E+VNINIVGDF LNEE+AIILASF Sbjct 421 AYWVPRASADIGSGHTGITGDNVETLNEDLLEILSRERVNINIVGDFHLNEEVAIILASF 480 Query 301 SASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEA 360 SASTSAF++T+K LDYK+FK IVESCGN+KVTKGK KGAWNIG+Q+S+L+PL F S+A Sbjct 481 SASTSAFIDTIKSLDYKSFKTIVESCGNYKVTKGKPVKGAWNIGQQRSVLTPLCGFPSQA 540 Query 361 ARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAY 420 A V+RSIF+RTL+ A +S+ LQ+AA+TILDGIS+ SLRL+DAM++TSDL TN++++MAY Sbjct 541 AGVIRSIFARTLDAANHSIPDLQRAAVTILDGISEQSLRLVDAMVYTSDLLTNSVIIMAY 600 Query 421 ITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIV 480 +TGG+VQ TSQWL+N+ GT EKL+P+ +W+E K GVEFL+D WEI+KF+ T +IV Sbjct 601 VTGGLVQQTSQWLSNLLGTTVEKLRPIFEWIEAKLSAGVEFLKDAWEILKFLITGVFDIV 660 Query 481 GGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKC 540 GQI + IK+ V+ F +VNK L +C D + I GAKL++LNLGE F+ SKGLYR+C Sbjct 661 KGQIQVASDNIKDCVKCFIDVVNKALEMCIDQVTIAGAKLRSLNLGEVFIAQSKGLYRQC 720 Query 541 VKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVG 600 ++ +E+ LLMPLKAPKE+ FLEG++ T + +EEVVLK G+L+ LE P +VG Sbjct 721 IRGKEQLQLLMPLKAPKEVTFLEGDSHDTVLTSEEVVLKNGELEALETPVDSFTNGAIVG 780 Query 601 TPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGG 638 TPVC+NGLMLLEIKD E+YCAL+P ++ TNN F LKGG Sbjct 781 TPVCVNGLMLLEIKDKEQYCALSPGLLATNNVFRLKGG 818
>sp|P0C6F5|R1A_BC279 Replicase polyprotein 1a OS=Bat coronavirus
279/2005 OX=389167 GN=1a PE=3 SV=1 Length=4388 Score = 928 bits (2397), Expect = 0.0, Method: Composition-based stats. Identities = 441/638 (69%), Positives = 530/638 (83%), Gaps = 0/638 (0%) Query 1 AYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAW 60 A+TRYVDNNFCGPDGYPLECIKDLLARAGK+ CTLSEQLD+I++KRGVYCCREHEHEI W Sbjct 181 AFTRYVDNNFCGPDGYPLECIKDLLARAGKSMCTLSEQLDYIESKRGVYCCREHEHEIVW 240 Query 61 YTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRI 120 +TERSEKSYE QTPFEIK AKKFDTF GECP FVFPLNS +K IQPRVEKKK +GFMGRI Sbjct 241 FTERSEKSYERQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRI 300 Query 121 RSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYL 180 RSVYPVA+P ECN M LSTLMKC+HC E SWQT DF+KATCE CGTENL EG TTCGYL Sbjct 301 RSVYPVATPQECNDMHLSTLMKCNHCDEVSWQTCDFLKATCEQCGTENLVCEGPTTCGYL 360 Query 181 PQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKC 240 P NAVVK+ CPAC + EVGPEHS+A+YHN S ++T LRKGGRT FGGCVF+YVGC+NK Sbjct 361 PANAVVKMPCPACQDPEVGPEHSVADYHNHSNIETRLRKGGRTKCFGGCVFAYVGCYNKR 420 Query 241 AYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASF 300 AYWVPRASANIG +HTG+ G+ E LN++L+EIL +++VNINIVGDF LNEE+AIILASF Sbjct 421 AYWVPRASANIGASHTGITGDNVETLNEDLMEILNRDRVNINIVGDFHLNEEVAIILASF 480 Query 301 SASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEA 360 SAST AFV+TVKGLDYK FK IVESCGNFKVT+G+AKKGAWNIG++KSIL+PLY F S+A Sbjct 481 SASTCAFVDTVKGLDYKTFKDIVESCGNFKVTRGRAKKGAWNIGQEKSILTPLYGFPSQA 540 Query 361 ARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAY 420 A V+RSIF+R L+TA +S+ LQ+AAITILDGIS+ SLRLIDAM++TSDL TN+++VMAY Sbjct 541 AGVIRSIFTRALDTANHSIPDLQRAAITILDGISEQSLRLIDAMVYTSDLLTNSVIVMAY 600 Query 421 ITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIV 480 +TGG+VQ +QWL+N+ GT +KLKPV W+E K G+EFLRD WEI+KF+ T +IV Sbjct 601 VTGGLVQQITQWLSNMLGTTVDKLKPVFTWVEAKLSAGIEFLRDAWEILKFLVTGVFDIV 660 Query 481 GGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKC 540 GQI + +KE V+ F ++NK L +C D +II GAKL+ LNLGE F+ SKGLYR+C Sbjct 661 KGQIQVASDNLKECVKAFLDVLNKALEMCIDQVIIAGAKLRTLNLGEVFIAQSKGLYRQC 720 Query 541 VKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVG 600 ++ +E+ LLMPL+APKE+ F EG++ T +EEVVLK G+L+ LE P ++G Sbjct 721 IRGKEQLQLLMPLRAPKEVTFFEGDSHDTVFTSEEVVLKNGELEALETPVDSFTNGAVIG 780 Query 601 TPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGG 638 TPVC+NGLMLLE+KD E+YCAL+P ++ TNN F+LKGG Sbjct 781 TPVCVNGLMLLELKDKEQYCALSPGLLATNNVFSLKGG 818
>sp|P0C6W2|R1AB_BCHK3 Replicase polyprotein 1ab OS=Bat coronavirus
HKU3 OX=442736 GN=rep PE=3 SV=1 Length=7067 Score = 925 bits (2390), Expect = 0.0, Method: Composition-based stats. Identities = 440/637 (69%), Positives = 521/637 (82%), Gaps = 0/637 (0%) Query 2 YTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAWY 61 TRYVDNNFCGPDGYPLECIKD LARAGK+ CTLSEQLD+I++KRGVYCCREHEHEI W+ Sbjct 182 VTRYVDNNFCGPDGYPLECIKDFLARAGKSMCTLSEQLDYIESKRGVYCCREHEHEIVWF 241 Query 62 TERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRIR 121 TERSEKSYE QTPFEIK AKKFDTF GECP FVFPLNS +K IQPRVEKKK +GFMGRIR Sbjct 242 TERSEKSYEHQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRIR 301 Query 122 SVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYLP 181 SVYPVA+P ECN M LSTLMKC+HC E SWQT DF+KATCE CGTENL EG TTCGYLP Sbjct 302 SVYPVATPQECNDMHLSTLMKCNHCDEVSWQTCDFLKATCEQCGTENLVCEGPTTCGYLP 361 Query 182 QNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKCA 241 NAVVK+ CPAC + EVGPEHS+A+YHN S ++T LRKGGRT FGGCVFSYVGC+NK A Sbjct 362 TNAVVKMPCPACQDPEVGPEHSVADYHNHSNIETRLRKGGRTKCFGGCVFSYVGCYNKRA 421 Query 242 YWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASFS 301 YWVPRASANIG NHTG+ GE E LN++LLEIL +E+VNINIVGDF+ NEE+AIILASFS Sbjct 422 YWVPRASANIGANHTGITGENVETLNEDLLEILNRERVNINIVGDFRFNEEVAIILASFS 481 Query 302 ASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEAA 361 AS SAF+ETVKGLDYK+FK IVESCGN+KVT GK GAWNIG+Q+SIL+PL F S+AA Sbjct 482 ASPSAFIETVKGLDYKSFKVIVESCGNYKVTNGKPVTGAWNIGQQRSILTPLCGFPSQAA 541 Query 362 RVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAYI 421 V+RSIFSRTL+ A +S+ LQ+AA+T LDGIS+ SLRL+DAM++TSDL TN++VVMAY+ Sbjct 542 GVIRSIFSRTLDAANHSILDLQRAAVTTLDGISEQSLRLVDAMVYTSDLLTNSVVVMAYV 601 Query 422 TGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIVG 481 TGG+VQ T QWL+N+ GT +KLKPV W+E K GVEFLRD WEI+KF+ T +++ Sbjct 602 TGGLVQQTMQWLSNMLGTAVDKLKPVFTWVEAKLSAGVEFLRDAWEILKFLITGVFDVIK 661 Query 482 GQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKCV 541 GQI IKE V+ F +VNK L +C D + I G KL+ALNLGE F+ S+GLYR+C+ Sbjct 662 GQIQVATDNIKECVKIFLGVVNKALEMCLDQVTIAGTKLRALNLGEVFIAQSRGLYRQCI 721 Query 542 KSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVGT 601 + +E+ LLMPLKAPKE+ FLEG+ T + +EEVVLK+G+L+ LE P +VGT Sbjct 722 RGKEQLQLLMPLKAPKEVTFLEGDAHDTVLTSEEVVLKSGELEALETPIDSFTSGAVVGT 781 Query 602 PVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGG 638 PVCINGLMLLE+++ E+YCAL+P ++ TNN F LKGG Sbjct 782 PVCINGLMLLELENKEQYCALSPGLLATNNVFRLKGG 818
>sp|P0C6F8|R1A_BCHK3 Replicase polyprotein 1a OS=Bat coronavirus
HKU3 OX=442736 GN=1a PE=3 SV=1 Length=4376 Score = 922 bits (2383), Expect = 0.0, Method: Composition-based stats. Identities = 440/637 (69%), Positives = 521/637 (82%), Gaps = 0/637 (0%) Query 2 YTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAWY 61 TRYVDNNFCGPDGYPLECIKD LARAGK+ CTLSEQLD+I++KRGVYCCREHEHEI W+ Sbjct 182 VTRYVDNNFCGPDGYPLECIKDFLARAGKSMCTLSEQLDYIESKRGVYCCREHEHEIVWF 241 Query 62 TERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRIR 121 TERSEKSYE QTPFEIK AKKFDTF GECP FVFPLNS +K IQPRVEKKK +GFMGRIR Sbjct 242 TERSEKSYEHQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRIR 301 Query 122 SVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYLP 181 SVYPVA+P ECN M LSTLMKC+HC E SWQT DF+KATCE CGTENL EG TTCGYLP Sbjct 302 SVYPVATPQECNDMHLSTLMKCNHCDEVSWQTCDFLKATCEQCGTENLVCEGPTTCGYLP 361 Query 182 QNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKCA 241 NAVVK+ CPAC + EVGPEHS+A+YHN S ++T LRKGGRT FGGCVFSYVGC+NK A Sbjct 362 TNAVVKMPCPACQDPEVGPEHSVADYHNHSNIETRLRKGGRTKCFGGCVFSYVGCYNKRA 421 Query 242 YWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASFS 301 YWVPRASANIG NHTG+ GE E LN++LLEIL +E+VNINIVGDF+ NEE+AIILASFS Sbjct 422 YWVPRASANIGANHTGITGENVETLNEDLLEILNRERVNINIVGDFRFNEEVAIILASFS 481 Query 302 ASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEAA 361 AS SAF+ETVKGLDYK+FK IVESCGN+KVT GK GAWNIG+Q+SIL+PL F S+AA Sbjct 482 ASPSAFIETVKGLDYKSFKVIVESCGNYKVTNGKPVTGAWNIGQQRSILTPLCGFPSQAA 541 Query 362 RVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAYI 421 V+RSIFSRTL+ A +S+ LQ+AA+T LDGIS+ SLRL+DAM++TSDL TN++VVMAY+ Sbjct 542 GVIRSIFSRTLDAANHSILDLQRAAVTTLDGISEQSLRLVDAMVYTSDLLTNSVVVMAYV 601 Query 422 TGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIVG 481 TGG+VQ T QWL+N+ GT +KLKPV W+E K GVEFLRD WEI+KF+ T +++ Sbjct 602 TGGLVQQTMQWLSNMLGTAVDKLKPVFTWVEAKLSAGVEFLRDAWEILKFLITGVFDVIK 661 Query 482 GQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKCV 541 GQI IKE V+ F +VNK L +C D + I G KL+ALNLGE F+ S+GLYR+C+ Sbjct 662 GQIQVATDNIKECVKIFLGVVNKALEMCLDQVTIAGTKLRALNLGEVFIAQSRGLYRQCI 721 Query 542 KSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVGT 601 + +E+ LLMPLKAPKE+ FLEG+ T + +EEVVLK+G+L+ LE P +VGT Sbjct 722 RGKEQLQLLMPLKAPKEVTFLEGDAHDTVLTSEEVVLKSGELEALETPIDSFTSGAVVGT 781 Query 602 PVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGG 638 PVCINGLMLLE+++ E+YCAL+P ++ TNN F LKGG Sbjct 782 PVCINGLMLLELENKEQYCALSPGLLATNNVFRLKGG 818
>sp|P0C6W6|R1AB_BCRP3 Replicase polyprotein 1ab OS=Bat coronavirus
Rp3/2004 OX=349344 GN=rep PE=3 SV=1 Length=7071 Score = 913 bits (2359), Expect = 0.0, Method: Composition-based stats. Identities = 432/638 (68%), Positives = 523/638 (82%), Gaps = 0/638 (0%) Query 1 AYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAW 60 A TRYVDNNFCGPDGYPLECIKDLLARAGK+ CTLSEQLD+I++KRGVYCCR+H HEIAW Sbjct 181 ALTRYVDNNFCGPDGYPLECIKDLLARAGKSMCTLSEQLDYIESKRGVYCCRDHGHEIAW 240 Query 61 YTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRI 120 +TERS+KSYE QTPFEIK AKKFDTF GECP FVFPLNS +K IQPRVEKKK +GFMGRI Sbjct 241 FTERSDKSYEHQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRI 300 Query 121 RSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYL 180 RSVYPVA+P ECN M LSTLMKC+HC E SWQT DF+KATCE CGTENL EG TCGYL Sbjct 301 RSVYPVATPQECNNMHLSTLMKCNHCDEVSWQTCDFLKATCEQCGTENLVSEGPNTCGYL 360 Query 181 PQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKC 240 P NAVVK+ CPAC + E+GPEHS A+YHN S ++T LRKGGRT FGGCVF+YVGC+NK Sbjct 361 PTNAVVKMPCPACQDPEIGPEHSAADYHNHSNIETRLRKGGRTRCFGGCVFAYVGCYNKR 420 Query 241 AYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASF 300 AYWVPRASA+IG HTG+ G+ E LN++LLEIL +E+VNINIVGDF+LNEE+AIILASF Sbjct 421 AYWVPRASADIGSGHTGITGDNVETLNEDLLEILSRERVNINIVGDFQLNEEVAIILASF 480 Query 301 SASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEA 360 SASTSAF++T+K LDYK+FK IVESCGN+KVTKGK KGAWNIG+ +S+L+PL F S+A Sbjct 481 SASTSAFIDTIKSLDYKSFKTIVESCGNYKVTKGKPIKGAWNIGQHRSVLTPLCGFPSQA 540 Query 361 ARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAY 420 A V+RSIFSRTL+ A +S+ LQ+AA+TILD IS+ SLRL+DAM++TS+L TN++++MAY Sbjct 541 AGVIRSIFSRTLDAANHSIPDLQRAAVTILDSISEQSLRLVDAMVYTSNLLTNSVIIMAY 600 Query 421 ITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIV 480 +TGG+VQ TSQWL+N+ T EKL+P+ W+E K GVEFL+D WEI+KF+ T +IV Sbjct 601 VTGGLVQQTSQWLSNLLDTTVEKLRPIFAWIEAKLSAGVEFLKDAWEILKFLITGVFDIV 660 Query 481 GGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKC 540 GQI + IK+ V+ F +VNK L +C D + I GAKL++LNLGE F+ SKGLYR+C Sbjct 661 KGQIQVASDNIKDCVKCFVDVVNKALEMCIDQVTIAGAKLRSLNLGEVFIAQSKGLYRQC 720 Query 541 VKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVG 600 ++ +E+ LLMPLKAPKE+ FLEG++ T + +EEVVLK G+L+ LE P +VG Sbjct 721 IRGKEQLQLLMPLKAPKEVTFLEGDSHDTVLTSEEVVLKNGELEALETPVDSFTNGAVVG 780 Query 601 TPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGG 638 TPVCINGLMLLEIK E+YCAL+P ++ TNN F LKGG Sbjct 781 TPVCINGLMLLEIKANEQYCALSPGLLATNNVFRLKGG 818
>sp|P0C6T7|R1A_BCRP3 Replicase polyprotein 1a OS=Bat coronavirus
Rp3/2004 OX=349344 GN=1a PE=3 SV=1 Length=4380 Score = 911 bits (2354), Expect = 0.0, Method: Composition-based stats. Identities = 432/638 (68%), Positives = 523/638 (82%), Gaps = 0/638 (0%) Query 1 AYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAW 60 A TRYVDNNFCGPDGYPLECIKDLLARAGK+ CTLSEQLD+I++KRGVYCCR+H HEIAW Sbjct 181 ALTRYVDNNFCGPDGYPLECIKDLLARAGKSMCTLSEQLDYIESKRGVYCCRDHGHEIAW 240 Query 61 YTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRI 120 +TERS+KSYE QTPFEIK AKKFDTF GECP FVFPLNS +K IQPRVEKKK +GFMGRI Sbjct 241 FTERSDKSYEHQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRI 300 Query 121 RSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYL 180 RSVYPVA+P ECN M LSTLMKC+HC E SWQT DF+KATCE CGTENL EG TCGYL Sbjct 301 RSVYPVATPQECNNMHLSTLMKCNHCDEVSWQTCDFLKATCEQCGTENLVSEGPNTCGYL 360 Query 181 PQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKC 240 P NAVVK+ CPAC + E+GPEHS A+YHN S ++T LRKGGRT FGGCVF+YVGC+NK Sbjct 361 PTNAVVKMPCPACQDPEIGPEHSAADYHNHSNIETRLRKGGRTRCFGGCVFAYVGCYNKR 420 Query 241 AYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASF 300 AYWVPRASA+IG HTG+ G+ E LN++LLEIL +E+VNINIVGDF+LNEE+AIILASF Sbjct 421 AYWVPRASADIGSGHTGITGDNVETLNEDLLEILSRERVNINIVGDFQLNEEVAIILASF 480 Query 301 SASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEA 360 SASTSAF++T+K LDYK+FK IVESCGN+KVTKGK KGAWNIG+ +S+L+PL F S+A Sbjct 481 SASTSAFIDTIKSLDYKSFKTIVESCGNYKVTKGKPIKGAWNIGQHRSVLTPLCGFPSQA 540 Query 361 ARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAY 420 A V+RSIFSRTL+ A +S+ LQ+AA+TILD IS+ SLRL+DAM++TS+L TN++++MAY Sbjct 541 AGVIRSIFSRTLDAANHSIPDLQRAAVTILDSISEQSLRLVDAMVYTSNLLTNSVIIMAY 600 Query 421 ITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIV 480 +TGG+VQ TSQWL+N+ T EKL+P+ W+E K GVEFL+D WEI+KF+ T +IV Sbjct 601 VTGGLVQQTSQWLSNLLDTTVEKLRPIFAWIEAKLSAGVEFLKDAWEILKFLITGVFDIV 660 Query 481 GGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKC 540 GQI + IK+ V+ F +VNK L +C D + I GAKL++LNLGE F+ SKGLYR+C Sbjct 661 KGQIQVASDNIKDCVKCFVDVVNKALEMCIDQVTIAGAKLRSLNLGEVFIAQSKGLYRQC 720 Query 541 VKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVG 600 ++ +E+ LLMPLKAPKE+ FLEG++ T + +EEVVLK G+L+ LE P +VG Sbjct 721 IRGKEQLQLLMPLKAPKEVTFLEGDSHDTVLTSEEVVLKNGELEALETPVDSFTNGAVVG 780 Query 601 TPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGG 638 TPVCINGLMLLEIK E+YCAL+P ++ TNN F LKGG Sbjct 781 TPVCINGLMLLEIKANEQYCALSPGLLATNNVFRLKGG 818
>sp|P0DTD1|R1AB_SARS2 Replicase polyprotein 1ab OS=Severe acute
respiratory syndrome coronavirus 2 OX=2697049 GN=rep PE=1 SV=1 Length=7096 Score = 883 bits (2281), Expect = 0.0, Method: Composition-based stats. Identities = 638/638 (100%), Positives = 638/638 (100%), Gaps = 0/638 (0%) Query 1 AYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAW 60 AYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAW Sbjct 181 AYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAW 240 Query 61 YTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRI 120 YTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRI Sbjct 241 YTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRI 300 Query 121 RSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYL 180 RSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYL Sbjct 301 RSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYL 360 Query 181 PQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKC 240 PQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKC Sbjct 361 PQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKC 420 Query 241 AYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASF 300 AYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASF Sbjct 421 AYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASF 480 Query 301 SASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEA 360 SASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEA Sbjct 481 SASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEA 540 Query 361 ARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAY 420 ARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAY Sbjct 541 ARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAY 600 Query 421 ITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIV 480 ITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIV Sbjct 601 ITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIV 660 Query 481 GGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKC 540 GGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKC Sbjct 661 GGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKC 720 Query 541 VKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVG 600 VKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVG Sbjct 721 VKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVG 780 Query 601 TPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGG 638 TPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGG Sbjct 781 TPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGG 818
>sp|P0DTC1|R1A_SARS2 Replicase polyprotein 1a OS=Severe acute
respiratory syndrome coronavirus 2 OX=2697049 PE=1 SV=1 Length=4405 Score = 880 bits (2273), Expect = 0.0, Method: Composition-based stats. Identities = 638/638 (100%), Positives = 638/638 (100%), Gaps = 0/638 (0%) Query 1 AYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAW 60 AYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAW Sbjct 181 AYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAW 240 Query 61 YTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRI 120 YTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRI Sbjct 241 YTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRI 300 Query 121 RSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYL 180 RSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYL Sbjct 301 RSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYL 360 Query 181 PQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKC 240 PQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKC Sbjct 361 PQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKC 420 Query 241 AYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASF 300 AYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASF Sbjct 421 AYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASF 480 Query 301 SASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEA 360 SASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEA Sbjct 481 SASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEA 540 Query 361 ARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAY 420 ARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAY Sbjct 541 ARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAY 600 Query 421 ITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIV 480 ITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIV Sbjct 601 ITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIV 660 Query 481 GGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKC 540 GGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKC Sbjct 661 GGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKC 720 Query 541 VKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVG 600 VKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVG Sbjct 721 VKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVG 780 Query 601 TPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGG 638 TPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGG Sbjct 781 TPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGG 818
>sp|P0C6W3|R1AB_BCHK4 Replicase polyprotein 1ab OS=Bat coronavirus
HKU4 OX=694007 GN=rep PE=1 SV=1 Length=7119 Score = 710 bits (1832), Expect = 0.0, Method: Composition-based stats. Identities = 148/667 (22%), Positives = 269/667 (40%), Gaps = 53/667 (8%) Query 6 VDNNFCGPDGYPLECIKDLLARAGKA--SCTLSEQLDFIDTKRGVYCCREHEHEIAWYTE 63 +D CG +G P+ ++A+ G + + +D+ R + + + + W Sbjct 200 IDQYMCGKNGKPIADYAKIVAKEGLTTLADIEVDVKSRMDSDRFI-VLNKKLYRVVWNVT 258 Query 64 RSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRIRSV 123 R Y QT F I + D P F + S I + P ++ F + R + Sbjct 259 RRNVPYPKQTAFTIVSVVQCDD-KDSVPEHTFTIGSQILMVSP-LKATNNKNFNLKQRLL 316 Query 124 YPVA---SPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKE-GATTCGY 179 Y + + + S + C+ CG +W TG+ ++ CG + + G Sbjct 317 YTFYGKDAVQQPGYIYHSAYVDCNACGRGTWCTGNAIQGFACDCGANYSANDVDLQSSGL 376 Query 180 LPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGR--TIAFGGCVFSYVGCH 237 +P+NA+ CP +N HS A+ +N K + GG+ T+ FGG V++Y+GC Sbjct 377 VPRNALFLANCPCANNGAC--SHSAAQVYNILDGKACVEVGGKSFTLTFGGVVYAYMGCC 434 Query 238 NKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLE----ILQKEKVNINIVGDFKLNEEI 293 + Y+VPRA + + + G G D ++E L+K + ++N F L E Sbjct 435 DGTMYFVPRAKSCVSRI-GDAIFTGCTGTWDKVVETANLFLEKAQRSLNFCQQFALTE-- 491 Query 294 AIILASFSASTSAFVETVKGLDYKAFKQIVESCGN--FKVTKGKAKKGAWNIGEQ----K 347 ++LA S +TS F E +++++ + N F VT G + A NIG Sbjct 492 -VVLAILSGTTSTFEELRDLCHNASYEKVRDHLVNHGFVVTIGDYIRDAINIGANGVCNA 550 Query 348 SILSPLYAFAS--EAARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMM 405 +I +P AF E+ + V +I + N L + I+ + Y + D Sbjct 551 TINAPFIAFTGLGESFKKVSAI---PWKICSNLKSALDYYSSNIMFRVFPYDIP-CDVSN 606 Query 406 FTSDLATNNLVVMAYITGGVVQLTSQWLTNIFGT----VYEKLKPVLDWLEEKFKEGVEF 461 F L + +A + V++ + + GT L L+ + F Sbjct 607 FVELLLDCGKLTVA-TSYFVLRYLDEKFDTVLGTVSSACQTALSSFLNACVAASRATAGF 665 Query 462 LRDGWEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLK 521 + D +++ K + V A+ + VQ +++K + L ++ G KL Sbjct 666 INDMFKLFKVLMHKLYVYTSCGYVAVAEHSSKIVQQVLDIMSKAMKLLHTNVSWAGTKLS 725 Query 522 ALNL-GETFVTHSKGLY----RKCVKSREETGLLMPLKAPKEIIFL-----EGETLPTEV 571 A+ G + + G Y K + + L++P K+ + + +T+ Sbjct 726 AIIYEGREALLFNSGTYFCLSTKAKTLQGQMNLVLPGDYNKKTLGILDPVPNADTIDVNA 785 Query 572 LTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVCINGLMLLEIKDTEKYCALAPNMMVTNN 631 + V + G L+ PT+E + +VG V ++ + + +D E Y L N V + Sbjct 786 NSTVVDVVHGQLE----PTNEHGPSMIVGNYVLVSDKLFVRTEDEEFY-PLCTNGKVVST 840 Query 632 TFTLKGG 638 F LKGG Sbjct 841 LFRLKGG 847
>sp|P0C6T4|R1A_BCHK4 Replicase polyprotein 1a OS=Bat coronavirus
HKU4 OX=694007 GN=1a PE=1 SV=1 Length=4434 Score = 709 bits (1831), Expect = 0.0, Method: Composition-based stats. Identities = 148/667 (22%), Positives = 269/667 (40%), Gaps = 53/667 (8%) Query 6 VDNNFCGPDGYPLECIKDLLARAGKA--SCTLSEQLDFIDTKRGVYCCREHEHEIAWYTE 63 +D CG +G P+ ++A+ G + + +D+ R + + + + W Sbjct 200 IDQYMCGKNGKPIADYAKIVAKEGLTTLADIEVDVKSRMDSDRFI-VLNKKLYRVVWNVT 258 Query 64 RSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRIRSV 123 R Y QT F I + D P F + S I + P ++ F + R + Sbjct 259 RRNVPYPKQTAFTIVSVVQCDD-KDSVPEHTFTIGSQILMVSP-LKATNNKNFNLKQRLL 316 Query 124 YPVA---SPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKE-GATTCGY 179 Y + + + S + C+ CG +W TG+ ++ CG + + G Sbjct 317 YTFYGKDAVQQPGYIYHSAYVDCNACGRGTWCTGNAIQGFACDCGANYSANDVDLQSSGL 376 Query 180 LPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGR--TIAFGGCVFSYVGCH 237 +P+NA+ CP +N HS A+ +N K + GG+ T+ FGG V++Y+GC Sbjct 377 VPRNALFLANCPCANNGAC--SHSAAQVYNILDGKACVEVGGKSFTLTFGGVVYAYMGCC 434 Query 238 NKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLE----ILQKEKVNINIVGDFKLNEEI 293 + Y+VPRA + + + G G D ++E L+K + ++N F L E Sbjct 435 DGTMYFVPRAKSCVSRI-GDAIFTGCTGTWDKVVETANLFLEKAQRSLNFCQQFALTE-- 491 Query 294 AIILASFSASTSAFVETVKGLDYKAFKQIVESCGN--FKVTKGKAKKGAWNIGEQ----K 347 ++LA S +TS F E +++++ + N F VT G + A NIG Sbjct 492 -VVLAILSGTTSTFEELRDLCHNASYEKVRDHLVNHGFVVTIGDYIRDAINIGANGVCNA 550 Query 348 SILSPLYAFAS--EAARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMM 405 +I +P AF E+ + V +I + N L + I+ + Y + D Sbjct 551 TINAPFIAFTGLGESFKKVSAI---PWKICSNLKSALDYYSSNIMFRVFPYDIP-CDVSN 606 Query 406 FTSDLATNNLVVMAYITGGVVQLTSQWLTNIFGT----VYEKLKPVLDWLEEKFKEGVEF 461 F L + +A + V++ + + GT L L+ + F Sbjct 607 FVELLLDCGKLTVA-TSYFVLRYLDEKFDTVLGTVSSACQTALSSFLNACVAASRATAGF 665 Query 462 LRDGWEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLK 521 + D +++ K + V A+ + VQ +++K + L ++ G KL Sbjct 666 INDMFKLFKVLMHKLYVYTSCGYVAVAEHSSKIVQQVLDIMSKAMKLLHTNVSWAGTKLS 725 Query 522 ALNL-GETFVTHSKGLY----RKCVKSREETGLLMPLKAPKEIIFL-----EGETLPTEV 571 A+ G + + G Y K + + L++P K+ + + +T+ Sbjct 726 AIIYEGREALLFNSGTYFCLSTKAKTLQGQMNLVLPGDYNKKTLGILDPVPNADTIDVNA 785 Query 572 LTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVCINGLMLLEIKDTEKYCALAPNMMVTNN 631 + V + G L+ PT+E + +VG V ++ + + +D E Y L N V + Sbjct 786 NSTVVDVVHGQLE----PTNEHGPSMIVGNYVLVSDKLFVRTEDEEFY-PLCTNGKVVST 840 Query 632 TFTLKGG 638 F LKGG Sbjct 841 LFRLKGG 847
>sp|P0C6W1|R1AB_BC133 Replicase polyprotein 1ab OS=Bat coronavirus
133/2005 OX=389230 GN=rep PE=3 SV=1 Length=7126 Score = 709 bits (1831), Expect = 0.0, Method: Composition-based stats. Identities = 146/667 (22%), Positives = 268/667 (40%), Gaps = 53/667 (8%) Query 6 VDNNFCGPDGYPLECIKDLLARAGKA--SCTLSEQLDFIDTKRGVYCCREHEHEIAWYTE 63 VD CG +G P+ ++A+ G + + +D+ R + + + + W Sbjct 200 VDQYMCGKNGKPIADYAKIVAKEGLTTLADIEVDVKSRMDSDRFI-VLNKKLYRVVWNVT 258 Query 64 RSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRIRSV 123 R Y QT F + + D P F + S I + P ++ F + R + Sbjct 259 RRNVPYSKQTAFTVVSVIQCDD-KESVPEHTFTIGSQILMVSP-LKATNNKNFNLKQRLL 316 Query 124 ---YPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKE-GATTCGY 179 Y + + + S + C+ CG +W TG+ ++ CG + + G Sbjct 317 HTFYGKEAVQQPGYIYHSAYVDCNACGRGTWCTGNAIQGFACDCGANYSANDVDLQSSGL 376 Query 180 LPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGR--TIAFGGCVFSYVGCH 237 +P+NA+ CP +N H+ A+ ++ K + GG+ T+ FGG V++Y+GC Sbjct 377 VPKNALFLANCPCANNGAC--SHNAAQVYSILDGKACVEVGGKSFTLTFGGVVYAYMGCC 434 Query 238 NKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLE----ILQKEKVNINIVGDFKLNEEI 293 + Y+VPRA + + + G G D ++E L+K + ++N F L E Sbjct 435 DGTMYFVPRAKSCVSRI-GDAIFTGCTGTWDKVVETANLFLEKAQHSLNFCQQFALTE-- 491 Query 294 AIILASFSASTSAFVETVKGLDYKAFKQIVESCGN--FKVTKGKAKKGAWNIGEQ----K 347 ++LA S +TS F E +++++ + N F VT G + A NIG Sbjct 492 -VVLAILSGTTSTFEELRDLCHNASYEKVRDHLVNHGFVVTIGDYIRDAINIGANGVCNA 550 Query 348 SILSPLYAFAS--EAARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMM 405 +I +P AF E+ + V +I + N L I+ + Y + D Sbjct 551 TINAPFIAFTGLGESFKKVAAI---PWKICSNLKSALDYYCSNIMFRVFPYDIP-CDVND 606 Query 406 FTSDLATNNLVVMAYITGGVVQLTSQWLTNIFGT----VYEKLKPVLDWLEEKFKEGVEF 461 F L + +A + V++ + + GT L L+ + F Sbjct 607 FVELLLDCGKLTVA-TSYFVLRYLDEKFDTVLGTVSNACQTALSSFLNACVAASRATAGF 665 Query 462 LRDGWEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLK 521 + D +++ K + V A+ + VQ +++K + L ++ G KL Sbjct 666 ISDMFKLFKVLMHKLYVYTSCGYVAVAEHSSKIVQQVLDIMSKAMKLLHTNVSWAGTKLS 725 Query 522 ALNL-GETFVTHSKGLY----RKCVKSREETGLLMPLKAPKEIIFL-----EGETLPTEV 571 A+ G + + G Y K +++ L++P K+ + + +T+ Sbjct 726 AIIYEGREALLFNSGTYFCLSTKAKTLQDQMNLVLPGDYNKKTLGILDPVPNADTIDVTA 785 Query 572 LTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVCINGLMLLEIKDTEKYCALAPNMMVTNN 631 + V + G L+ PT+E + +VG V ++ + + D E Y L N V + Sbjct 786 NSTVVDVVHGQLE----PTNEHGPSMIVGNYVLVSDKLFVRTDDEEFY-PLCINGKVVST 840 Query 632 TFTLKGG 638 F LKGG Sbjct 841 LFRLKGG 847
>sp|P0C6F7|R1A_BC133 Replicase polyprotein 1a OS=Bat coronavirus
133/2005 OX=389230 GN=1a PE=3 SV=1 Length=4441 Score = 709 bits (1829), Expect = 0.0, Method: Composition-based stats. Identities = 146/667 (22%), Positives = 268/667 (40%), Gaps = 53/667 (8%) Query 6 VDNNFCGPDGYPLECIKDLLARAGKA--SCTLSEQLDFIDTKRGVYCCREHEHEIAWYTE 63 VD CG +G P+ ++A+ G + + +D+ R + + + + W Sbjct 200 VDQYMCGKNGKPIADYAKIVAKEGLTTLADIEVDVKSRMDSDRFI-VLNKKLYRVVWNVT 258 Query 64 RSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRIRSV 123 R Y QT F + + D P F + S I + P ++ F + R + Sbjct 259 RRNVPYSKQTAFTVVSVIQCDD-KESVPEHTFTIGSQILMVSP-LKATNNKNFNLKQRLL 316 Query 124 ---YPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKE-GATTCGY 179 Y + + + S + C+ CG +W TG+ ++ CG + + G Sbjct 317 HTFYGKEAVQQPGYIYHSAYVDCNACGRGTWCTGNAIQGFACDCGANYSANDVDLQSSGL 376 Query 180 LPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGR--TIAFGGCVFSYVGCH 237 +P+NA+ CP +N H+ A+ ++ K + GG+ T+ FGG V++Y+GC Sbjct 377 VPKNALFLANCPCANNGAC--SHNAAQVYSILDGKACVEVGGKSFTLTFGGVVYAYMGCC 434 Query 238 NKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLE----ILQKEKVNINIVGDFKLNEEI 293 + Y+VPRA + + + G G D ++E L+K + ++N F L E Sbjct 435 DGTMYFVPRAKSCVSRI-GDAIFTGCTGTWDKVVETANLFLEKAQHSLNFCQQFALTE-- 491 Query 294 AIILASFSASTSAFVETVKGLDYKAFKQIVESCGN--FKVTKGKAKKGAWNIGEQ----K 347 ++LA S +TS F E +++++ + N F VT G + A NIG Sbjct 492 -VVLAILSGTTSTFEELRDLCHNASYEKVRDHLVNHGFVVTIGDYIRDAINIGANGVCNA 550 Query 348 SILSPLYAFAS--EAARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMM 405 +I +P AF E+ + V +I + N L I+ + Y + D Sbjct 551 TINAPFIAFTGLGESFKKVAAI---PWKICSNLKSALDYYCSNIMFRVFPYDIP-CDVND 606 Query 406 FTSDLATNNLVVMAYITGGVVQLTSQWLTNIFGT----VYEKLKPVLDWLEEKFKEGVEF 461 F L + +A + V++ + + GT L L+ + F Sbjct 607 FVELLLDCGKLTVA-TSYFVLRYLDEKFDTVLGTVSNACQTALSSFLNACVAASRATAGF 665 Query 462 LRDGWEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLK 521 + D +++ K + V A+ + VQ +++K + L ++ G KL Sbjct 666 ISDMFKLFKVLMHKLYVYTSCGYVAVAEHSSKIVQQVLDIMSKAMKLLHTNVSWAGTKLS 725 Query 522 ALNL-GETFVTHSKGLY----RKCVKSREETGLLMPLKAPKEIIFL-----EGETLPTEV 571 A+ G + + G Y K +++ L++P K+ + + +T+ Sbjct 726 AIIYEGREALLFNSGTYFCLSTKAKTLQDQMNLVLPGDYNKKTLGILDPVPNADTIDVTA 785 Query 572 LTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVCINGLMLLEIKDTEKYCALAPNMMVTNN 631 + V + G L+ PT+E + +VG V ++ + + D E Y L N V + Sbjct 786 NSTVVDVVHGQLE----PTNEHGPSMIVGNYVLVSDKLFVRTDDEEFY-PLCINGKVVST 840 Query 632 TFTLKGG 638 F LKGG Sbjct 841 LFRLKGG 847
>sp|P0C6W4|R1AB_BCHK5 Replicase polyprotein 1ab OS=Bat coronavirus
HKU5 OX=694008 GN=rep PE=3 SV=1 Length=7182 Score = 661 bits (1704), Expect = 0.0, Method: Composition-based stats. Identities = 143/670 (21%), Positives = 281/670 (42%), Gaps = 55/670 (8%) Query 6 VDNNFCGPDGYPLECIKDLLARAG--KASCTLSEQLDFIDTKRGVYCCREHEHEIAWYTE 63 +D CG +G P+ L+A G K + +E D+ R + + + I W + Sbjct 200 IDQYMCGKNGKPIAEFAALMASEGITKLADVEAEVKSRTDSDRYI-VFKNKLYRIVWNVQ 258 Query 64 RSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRIRSV 123 R + +Y Q+ F + + DT + P F + S I+ I P + + R + Sbjct 259 RKDVAYSKQSAFTMNSIVQLDTME-DVPRHSFTIGSEIQVIAPSTAVQANGHLNLKQRLL 317 Query 124 YPV---ASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKE-GATTCGY 179 Y + +E N + S + C CG+ SW TG+ V+ CG + + G Sbjct 318 YAFYGKQAVSEPNYIYHSAYVDCTSCGKGSWLTGNAVQGFACDCGAHYCANDVDLQSSGL 377 Query 180 LPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRT--IAFGGCVFSYVGCH 237 + +NAV+ CP + E +H+L + + K + G+T + +GG +++Y+GC Sbjct 378 VRKNAVLLTTCPCNKDGEC--KHTLPQLVSMMTDKCDVEVVGKTFILTYGGVIYAYMGCS 435 Query 238 NKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLE----ILQKEKVNINIVGDFKLNEEI 293 +++PRA + + + G G + E L++ + IN V +F L E + Sbjct 436 GGTMHFIPRAKSCVSKI-GDAIFTGCTGTWSKVCETANLFLERAQHAINFVNEFVLTETV 494 Query 294 AIILASFSASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGE----QKSI 349 +L+ ++S + + ++ + + G + VT G +G N+G ++ Sbjct 495 VALLSGTTSSIEELRDLCRNATFEKVRDYLTPRG-WIVTMGSYIEGVINVGAAGVCNAAL 553 Query 350 LSPLY-------AFASEAARVVR--SIFSRTLETAQNSVRVLQKAAITILDGISQYSLRL 400 +P +F AA + S TL+ +S+ + I ++ Y+ L Sbjct 554 NAPFIVLSGLGESFKKVAATPWKLCSSLRETLDHYADSI-TYRVFPYDIPCDVTDYTALL 612 Query 401 IDAMMFTSDLATNNLVVMAYITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVE 460 +D + T A V Y+ V QLT+ +F + + + +K + Sbjct 613 LDCAVLTGASA---YFVARYVDEKVEQLTNL----VFSSCQSAVAAFVQACMSTYKATAK 665 Query 461 FLRDGWEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKL 520 F+ D + ++K +S V + ++ F +++K + L ++ G+KL Sbjct 666 FISDMFTLIKVVSERLYVYTSVGFVVVGDYSSQLLKQFMHILSKAMQLLHTTVSWAGSKL 725 Query 521 KAL--NLGETFVTHSKGLY---RKCVKSREETGLLMPLK-APKEIIFLE----GETLPTE 570 ++ N ++ V S Y + +++ L++P + K+I LE T+ + Sbjct 726 PSVVYNGRDSLVFPSGTYYCVSTQGRSLQDQFDLVIPGDLSKKQIGILEPTPNSTTVDKK 785 Query 571 VLTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVCI-NGLMLLEIKDTEK-YCALAPNMMV 628 + T V + G L+P ++ + E +VG V I N + + ++D+E + L + + Sbjct 786 INTNVVEVVVGQLEPTKEHSPEL----VVGDYVIISNKIFVRSVEDSETVFYPLCTDGKI 841 Query 629 TNNTFTLKGG 638 F LKGG Sbjct 842 VPTLFRLKGG 851
>sp|P0C6T5|R1A_BCHK5 Replicase polyprotein 1a OS=Bat coronavirus
HKU5 OX=694008 GN=1a PE=3 SV=1 Length=4481 Score = 660 bits (1703), Expect = 0.0, Method: Composition-based stats. Identities = 143/670 (21%), Positives = 281/670 (42%), Gaps = 55/670 (8%) Query 6 VDNNFCGPDGYPLECIKDLLARAG--KASCTLSEQLDFIDTKRGVYCCREHEHEIAWYTE 63 +D CG +G P+ L+A G K + +E D+ R + + + I W + Sbjct 200 IDQYMCGKNGKPIAEFAALMASEGITKLADVEAEVKSRTDSDRYI-VFKNKLYRIVWNVQ 258 Query 64 RSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRIRSV 123 R + +Y Q+ F + + DT + P F + S I+ I P + + R + Sbjct 259 RKDVAYSKQSAFTMNSIVQLDTME-DVPRHSFTIGSEIQVIAPSTAVQANGHLNLKQRLL 317 Query 124 YPV---ASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKE-GATTCGY 179 Y + +E N + S + C CG+ SW TG+ V+ CG + + G Sbjct 318 YAFYGKQAVSEPNYIYHSAYVDCTSCGKGSWLTGNAVQGFACDCGAHYCANDVDLQSSGL 377 Query 180 LPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRT--IAFGGCVFSYVGCH 237 + +NAV+ CP + E +H+L + + K + G+T + +GG +++Y+GC Sbjct 378 VRKNAVLLTTCPCNKDGEC--KHTLPQLVSMMTDKCDVEVVGKTFILTYGGVIYAYMGCS 435 Query 238 NKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLE----ILQKEKVNINIVGDFKLNEEI 293 +++PRA + + + G G + E L++ + IN V +F L E + Sbjct 436 GGTMHFIPRAKSCVSKI-GDAIFTGCTGTWSKVCETANLFLERAQHAINFVNEFVLTETV 494 Query 294 AIILASFSASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGE----QKSI 349 +L+ ++S + + ++ + + G + VT G +G N+G ++ Sbjct 495 VALLSGTTSSIEELRDLCRNATFEKVRDYLTPRG-WIVTMGSYIEGVINVGAAGVCNAAL 553 Query 350 LSPLY-------AFASEAARVVR--SIFSRTLETAQNSVRVLQKAAITILDGISQYSLRL 400 +P +F AA + S TL+ +S+ + I ++ Y+ L Sbjct 554 NAPFIVLSGLGESFKKVAATPWKLCSSLRETLDHYADSI-TYRVFPYDIPCDVTDYTALL 612 Query 401 IDAMMFTSDLATNNLVVMAYITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVE 460 +D + T A V Y+ V QLT+ +F + + + +K + Sbjct 613 LDCAVLTGASA---YFVARYVDEKVEQLTNL----VFSSCQSAVAAFVQACMSTYKATAK 665 Query 461 FLRDGWEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKL 520 F+ D + ++K +S V + ++ F +++K + L ++ G+KL Sbjct 666 FISDMFTLIKVVSERLYVYTSVGFVVVGDYSSQLLKQFMHILSKAMQLLHTTVSWAGSKL 725 Query 521 KAL--NLGETFVTHSKGLY---RKCVKSREETGLLMPLK-APKEIIFLE----GETLPTE 570 ++ N ++ V S Y + +++ L++P + K+I LE T+ + Sbjct 726 PSVVYNGRDSLVFPSGTYYCVSTQGRSLQDQFDLVIPGDLSKKQIGILEPTPNSTTVDKK 785 Query 571 VLTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVCI-NGLMLLEIKDTEK-YCALAPNMMV 628 + T V + G L+P ++ + E +VG V I N + + ++D+E + L + + Sbjct 786 INTNVVEVVVGQLEPTKEHSPEL----VVGDYVIISNKIFVRSVEDSETVFYPLCTDGKI 841 Query 629 TNNTFTLKGG 638 F LKGG Sbjct 842 VPTLFRLKGG 851
>sp|K9N7C7|R1AB_MERS1 Replicase polyprotein 1ab OS=Middle East
respiratory syndrome-related coronavirus (isolate United Kingdom/H123990006/2012) OX=1263720 GN=rep PE=1 SV=1 Length=7078 Score = 604 bits (1558), Expect = 0.0, Method: Composition-based stats. Identities = 136/672 (20%), Positives = 261/672 (39%), Gaps = 55/672 (8%) Query 6 VDNNFCGPDGYPLECIKDLLARAG--KASCTLSEQLDFIDTKRGVYCCREHEHEIAWYTE 63 VD CG DG P+ L+A+ G K + ++ D G + + + + W+ E Sbjct 198 VDQYMCGVDGKPISAYAFLMAKDGITKLADVEADVAARAD-DEGFITLKNNLYRLVWHVE 256 Query 64 RSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRIRSV 123 R + Y Q+ F I + D P++ F L I T+ PR + + + + + Sbjct 257 RKDVPYPKQSIFTINSVVQKDGVENTPPHY-FTLGCKILTLTPRNKWSGVSDLSLKQKLL 315 Query 124 YPV---ASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKE-GATTCGY 179 Y S + S ++C CG SW TG+ ++ CG + + G Sbjct 316 YTFYGKESLENPTYIYHSAFIECGSCGNDSWLTGNAIQGFACGCGASYTANDVEVQSSGM 375 Query 180 LPQNAVVKIYCPACHNSEVGP--EHSLAEYHNESG--LKTILRKGGRTIAFGGCVFSYVG 235 + NA++ CP +HS+A+ + I T+ FGG ++Y G Sbjct 376 IKPNALLCATCPFAKGDSCSSNCKHSVAQLVSYLSERCNVIADSKSFTLIFGGVAYAYFG 435 Query 236 CHNKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLE----ILQKEKVNINIVGDFKLNE 291 C Y+VPRA + + + G G + + + L++ + ++N VG+F +N+ Sbjct 436 CEEGTMYFVPRAKSVVSRIGDSI-FTGCTGSWNKVTQIANMFLEQTQHSLNFVGEFVVND 494 Query 292 EIAIILASFSASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIG----EQK 347 + IL+ + + + +KG+ + + + VT G A N+G + Sbjct 495 VVLAILSGTTTNVDKIRQLLKGVTLDKLRDYLADY-DVAVTAGPFMDNAINVGGTGLQYA 553 Query 348 SILSPLYAFAS--EAARVVRSIFSRTLETAQNSV-----RVLQKAAITILD-GISQYSLR 399 +I +P E+ + V +I + + ++++ VL + +D G+S +S Sbjct 554 AITAPYVVLTGLGESFKKVATIPYKVCNSVKDTLTYYAHSVLYRVFPYDMDSGVSSFSEL 613 Query 400 LIDAMMFTSDLATNNLVVMAYITGGVVQ-LTSQWLTNIFGTVYEKLKPVLDWLEEKFKEG 458 L D + + V Y ++Q T +++ I + + +LD E + Sbjct 614 LFDCVDLS--------VASTYFLVRLLQDKTGDFMSTIITSCQTAVSKLLDTCFEATEAT 665 Query 459 VEFLRDGWEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGA 518 FL D + + A V ++ V+ L+NK + L + G+ Sbjct 666 FNFLLDLAGLFRIFLRNAYVYTSQGFVVVNGKVSTLVKQVLDLLNKGMQLLHTKVSWAGS 725 Query 519 KLKALNL--GETFVTHSKGLY---RKCVKSREETGLLMPLKAPKEIIFLEGETLP----- 568 + A+ E+ + S Y K +++ +++P + K+ + L T Sbjct 726 NISAVIYSGRESLIFPSGTYYCVTTKAKSVQQDLDVILPGEFSKKQLGLLQPTDNSTTVS 785 Query 569 TEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVCINGLMLLEIKDTE--KYCALAPNM 626 V + V G L+ T+ +VG V I+ + + K+ + + N Sbjct 786 VTVSSNMVETVVGQLEQ----TNMHSPDVIVGDYVIISEKLFVRSKEEDGFAFYPACTNG 841 Query 627 MVTNNTFTLKGG 638 F LKGG Sbjct 842 HAVPTLFRLKGG 853
>sp|K9N638|R1A_MERS1 Replicase polyprotein 1a OS=Middle East respiratory
syndrome-related coronavirus (isolate United Kingdom/H123990006/2012) OX=1263720 GN=1a PE=1 SV=1 Length=4391 Score = 604 bits (1557), Expect = 0.0, Method: Composition-based stats. Identities = 136/672 (20%), Positives = 261/672 (39%), Gaps = 55/672 (8%) Query 6 VDNNFCGPDGYPLECIKDLLARAG--KASCTLSEQLDFIDTKRGVYCCREHEHEIAWYTE 63 VD CG DG P+ L+A+ G K + ++ D G + + + + W+ E Sbjct 198 VDQYMCGVDGKPISAYAFLMAKDGITKLADVEADVAARAD-DEGFITLKNNLYRLVWHVE 256 Query 64 RSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRIRSV 123 R + Y Q+ F I + D P++ F L I T+ PR + + + + + Sbjct 257 RKDVPYPKQSIFTINSVVQKDGVENTPPHY-FTLGCKILTLTPRNKWSGVSDLSLKQKLL 315 Query 124 YPV---ASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKE-GATTCGY 179 Y S + S ++C CG SW TG+ ++ CG + + G Sbjct 316 YTFYGKESLENPTYIYHSAFIECGSCGNDSWLTGNAIQGFACGCGASYTANDVEVQSSGM 375 Query 180 LPQNAVVKIYCPACHNSEVGP--EHSLAEYHNESG--LKTILRKGGRTIAFGGCVFSYVG 235 + NA++ CP +HS+A+ + I T+ FGG ++Y G Sbjct 376 IKPNALLCATCPFAKGDSCSSNCKHSVAQLVSYLSERCNVIADSKSFTLIFGGVAYAYFG 435 Query 236 CHNKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLE----ILQKEKVNINIVGDFKLNE 291 C Y+VPRA + + + G G + + + L++ + ++N VG+F +N+ Sbjct 436 CEEGTMYFVPRAKSVVSRIGDSI-FTGCTGSWNKVTQIANMFLEQTQHSLNFVGEFVVND 494 Query 292 EIAIILASFSASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIG----EQK 347 + IL+ + + + +KG+ + + + VT G A N+G + Sbjct 495 VVLAILSGTTTNVDKIRQLLKGVTLDKLRDYLADY-DVAVTAGPFMDNAINVGGTGLQYA 553 Query 348 SILSPLYAFAS--EAARVVRSIFSRTLETAQNSV-----RVLQKAAITILD-GISQYSLR 399 +I +P E+ + V +I + + ++++ VL + +D G+S +S Sbjct 554 AITAPYVVLTGLGESFKKVATIPYKVCNSVKDTLTYYAHSVLYRVFPYDMDSGVSSFSEL 613 Query 400 LIDAMMFTSDLATNNLVVMAYITGGVVQ-LTSQWLTNIFGTVYEKLKPVLDWLEEKFKEG 458 L D + + V Y ++Q T +++ I + + +LD E + Sbjct 614 LFDCVDLS--------VASTYFLVRLLQDKTGDFMSTIITSCQTAVSKLLDTCFEATEAT 665 Query 459 VEFLRDGWEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGA 518 FL D + + A V ++ V+ L+NK + L + G+ Sbjct 666 FNFLLDLAGLFRIFLRNAYVYTSQGFVVVNGKVSTLVKQVLDLLNKGMQLLHTKVSWAGS 725 Query 519 KLKALNL--GETFVTHSKGLY---RKCVKSREETGLLMPLKAPKEIIFLEGETLP----- 568 + A+ E+ + S Y K +++ +++P + K+ + L T Sbjct 726 NISAVIYSGRESLIFPSGTYYCVTTKAKSVQQDLDVILPGEFSKKQLGLLQPTDNSTTVS 785 Query 569 TEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVCINGLMLLEIKDTE--KYCALAPNM 626 V + V G L+ T+ +VG V I+ + + K+ + + N Sbjct 786 VTVSSNMVETVVGQLEQ----TNMHSPDVIVGDYVIISEKLFVRSKEEDGFAFYPACTNG 841 Query 627 MVTNNTFTLKGG 638 F LKGG Sbjct 842 HAVPTLFRLKGG 853
>sp|P0C6T6|R1A_BCHK9 Replicase polyprotein 1a OS=Bat coronavirus
HKU9 OX=694006 GN=1a PE=3 SV=1 Length=4248 Score = 387 bits (995), Expect = 7e-117, Method: Composition-based stats. Identities = 134/660 (20%), Positives = 242/660 (37%), Gaps = 96/660 (15%) Query 7 DNNFCGPDGYPLECIKDLLA--RAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAWYTER 64 D +G +E + LL ++ L L T+ G Y + ++A R Sbjct 181 DQYGFDNNGILVEPVMKLLGVIKSDFTLEQLLAALGKYRTEDG-YDLPDGYVKVAIKVGR 239 Query 65 SEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLN--SIIKTIQPRVEKKKLDGFMGRIRS 122 Q+ F + P + +P + S+++ +P + S Sbjct 240 KAVPVLKQSIFTVVGVT-----EQLVPGYYYPFSTSSVVEHTKPTRGGPVGKTVEAVMLS 294 Query 123 VYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYLPQ 182 +Y + N + +KC +C W + CG E + ++C Sbjct 295 LYGTNNYNPATPV---ARLKCSYCDYYGWTPLKDIGTVNCLCGAE---FQLTSSCVDAES 348 Query 183 NAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRT-IAFGGCVFSYVGCHNKCA 241 V+K P C + G++ I G RT ++FGG ++S +G N Sbjct 349 AGVIK---PGC----------VMLLDKSPGMRLI--PGNRTYVSFGGAIWSPIGKVNGVT 393 Query 242 YWVPRASANIGCNHTGVVGEGSE-GLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASF 300 WVPRA + + H+G VG G +N L+E L + I + D N A +A+ Sbjct 394 VWVPRAYSIVAGEHSGAVGSGDTVAINKELVEYLIE---GIRVDADTLDNPTCATFIANL 450 Query 301 SASTSA----FVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAF 356 T A VE+++GL C K+ G E + L A+ Sbjct 451 DCDTKAPVVHTVESLQGL-----------CLANKIMLGDKPLPT---DEFHPFIVGL-AY 495 Query 357 ASEAARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLV 416 + A ++ SRT E ++ VR ++ +Q+ ++ + N V Sbjct 496 HVQRACWYGALASRTFEAFRDFVRTEEER-------FAQFFGKVCAPI--------NGCV 540 Query 417 VMAYITGGVVQLTSQWLTN------------IFGTVYEKLKPVLDWLEEKFKEGVEFLRD 464 +AY TG V ++ + N + V + LKP+L+W+ +K + + Sbjct 541 YLAYTTGRVTLFSAYQVLNTAIAKSKDAFGGVAAIVVDMLKPILEWVLKK----MSIAKG 596 Query 465 GW----EIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKL 520 W E + + +V G+ + + L+ ++ S+ G K+ Sbjct 597 AWLPYAEGLLALFKAQFTVVKGKFQFLRASLNSKCHSLCDLLTTIMSKLLTSVKWAGCKV 656 Query 521 KALNLGETFVTHSKGLYRKCVKSREETGLLM-PLKAPKEIIFLEGETLPTEVLTE-EVVL 578 AL G + KG+ + + GLL+ P + E+ L+G+ LT+ E+ Sbjct 657 DALYTGTYYYFSRKGVLTEVQLCAKRLGLLLTPKQQKMEVEVLDGDFDAPVTLTDLELEE 716 Query 579 KTGDLQPLEQPTSEAVEAPLVGTPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGG 638 TG L+ + + + GT V + + + +D Y + V F L+GG Sbjct 717 CTGVLEEVFGASD---VKLVKGTLVSLASKLFVRTEDGFLYRYVKSGG-VLGKAFRLRGG 772
>sp|P0C6W5|R1AB_BCHK9 Replicase polyprotein 1ab OS=Bat coronavirus
HKU9 OX=694006 GN=rep PE=1 SV=1 Length=6930 Score = 387 bits (994), Expect = 1e-116, Method: Composition-based stats. Identities = 134/660 (20%), Positives = 242/660 (37%), Gaps = 96/660 (15%) Query 7 DNNFCGPDGYPLECIKDLLA--RAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAWYTER 64 D +G +E + LL ++ L L T+ G Y + ++A R Sbjct 181 DQYGFDNNGILVEPVMKLLGVIKSDFTLEQLLAALGKYRTEDG-YDLPDGYVKVAIKVGR 239 Query 65 SEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLN--SIIKTIQPRVEKKKLDGFMGRIRS 122 Q+ F + P + +P + S+++ +P + S Sbjct 240 KAVPVLKQSIFTVVGVT-----EQLVPGYYYPFSTSSVVEHTKPTRGGPVGKTVEAVMLS 294 Query 123 VYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYLPQ 182 +Y + N + +KC +C W + CG E + ++C Sbjct 295 LYGTNNYNPATPV---ARLKCSYCDYYGWTPLKDIGTVNCLCGAE---FQLTSSCVDAES 348 Query 183 NAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRT-IAFGGCVFSYVGCHNKCA 241 V+K P C + G++ I G RT ++FGG ++S +G N Sbjct 349 AGVIK---PGC----------VMLLDKSPGMRLI--PGNRTYVSFGGAIWSPIGKVNGVT 393 Query 242 YWVPRASANIGCNHTGVVGEGSE-GLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASF 300 WVPRA + + H+G VG G +N L+E L + I + D N A +A+ Sbjct 394 VWVPRAYSIVAGEHSGAVGSGDTVAINKELVEYLIE---GIRVDADTLDNPTCATFIANL 450 Query 301 SASTSA----FVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAF 356 T A VE+++GL C K+ G E + L A+ Sbjct 451 DCDTKAPVVHTVESLQGL-----------CLANKIMLGDKPLPT---DEFHPFIVGL-AY 495 Query 357 ASEAARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLV 416 + A ++ SRT E ++ VR ++ +Q+ ++ + N V Sbjct 496 HVQRACWYGALASRTFEAFRDFVRTEEER-------FAQFFGKVCAPI--------NGCV 540 Query 417 VMAYITGGVVQLTSQWLTN------------IFGTVYEKLKPVLDWLEEKFKEGVEFLRD 464 +AY TG V ++ + N + V + LKP+L+W+ +K + + Sbjct 541 YLAYTTGRVTLFSAYQVLNTAIAKSKDAFGGVAAIVVDMLKPILEWVLKK----MSIAKG 596 Query 465 GW----EIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKL 520 W E + + +V G+ + + L+ ++ S+ G K+ Sbjct 597 AWLPYAEGLLALFKAQFTVVKGKFQFLRASLNSKCHSLCDLLTTIMSKLLTSVKWAGCKV 656 Query 521 KALNLGETFVTHSKGLYRKCVKSREETGLLM-PLKAPKEIIFLEGETLPTEVLTE-EVVL 578 AL G + KG+ + + GLL+ P + E+ L+G+ LT+ E+ Sbjct 657 DALYTGTYYYFSRKGVLTEVQLCAKRLGLLLTPKQQKMEVEVLDGDFDAPVTLTDLELEE 716 Query 579 KTGDLQPLEQPTSEAVEAPLVGTPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGG 638 TG L+ + + + GT V + + + +D Y + V F L+GG Sbjct 717 CTGVLEEVFGASD---VKLVKGTLVSLASKLFVRTEDGFLYRYVKSGG-VLGKAFRLRGG 772
>sp|P0C6W7|R1AB_CVBEN Replicase polyprotein 1ab OS=Bovine coronavirus
(strain 98TXSF-110-ENT) OX=233262 GN=rep PE=3 SV=1 Length=7094 Score = 81.0 bits (198), Expect = 3e-14, Method: Composition-based stats. Identities = 113/663 (17%), Positives = 196/663 (30%), Gaps = 114/663 (17%) Query 5 YVDNNFCGPDG---YPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAWY 61 YVD C G LE D + KA + Q D +AW+ Sbjct 252 YVDQYGCDYTGGLADGLEAYADKTLQEMKALFPIWSQELPFDVT------------VAWH 299 Query 62 TERSEKSY--ELQTPFEIKLAKKF-----DTFNGEC----PNFVFPLNSIIKTIQPRVEK 110 R + Y LQ+ I+ D +G P V+ +SII Q + Sbjct 300 VVR-DPRYVMRLQSASTIRSVAYVANPTEDLCDGSVVIKEPVHVYADDSIILR-QHNLVD 357 Query 111 KKLDGFMGRIRSVYPVASPN--ECNQMCLSTLMKC--DHCGETSWQTGDFVKATCE-FCG 165 +M V + +C + + C D C W G+ + CG Sbjct 358 IMSCFYMEADAVVNAFYGVDLKDCGFVMQFGYIDCEQDLCDFKGWVPGNMIDGFACTTCG 417 Query 166 TENLTKEGA-TTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTI 224 T + + G LP N V+ A + G + S Y G + Sbjct 418 HVYETGDLLAQSSGVLPVNPVLHTKSAAGYGG-FGCKDSFTLY------------GQTVV 464 Query 225 AFGGCVFSYVGCHNKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLE--------ILQK 276 FGGCV+ W+P +++ ++ G+V G G + E L Sbjct 465 YFGGCVY----WSPARNIWIPILKSSV-KSYDGLVYTGVVGCKAIVKETNLICKALYLDY 519 Query 277 EKVNINIVGDFKLNEEIAIILASFSASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKA 336 + + +L + + + ++ +DY ++ S F V Sbjct 520 VQHKCGNLHQRELLGVSDVWHKQLLLNRGVYKPLLENIDYFNMRRAKFSLETFTVCADGF 579 Query 337 KKGAWNIGEQKSILSPLYAFASEAARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQY 396 + ++ A + +A A I + Sbjct 580 MPFLLDDLVPRAY---YLAVSGQAFC---------------------DYADKICHAVVSK 615 Query 397 SLRLIDAMMFTSDLATNNLVVMAYITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFK 456 S L+D + + Y+ +V L +Q ++ + K+ K Sbjct 616 SKELLDV------SLDSLSAAIHYLNSKIVDL-AQHFSDFGTSFVSKIVHFF-----KTF 663 Query 457 EGVEFLRDGWEIVKFISTCACEIVGGQIVTCAK---EIKESVQTFFKLVNKFLALCADSI 513 L W + + A +V I Q F + L + Sbjct 664 TTSTALAFAWVLFHVL-HGAYIVVESDIYFVKNIPRYASAVAQAFRSVAKVVLDSLRVTF 722 Query 514 IIGGA-----KLKALNLGETFVTHSKGLYRKCVKSREETGLLMPLK---APKEIIFLEGE 565 I G + + + G +GL + L MP + A ++ I+L+G Sbjct 723 IDGLSCFKIGRRRICLSGSKIYEVERGLLHSSQLPLDVYDLTMPSQVQKAKQKPIYLKGS 782 Query 566 TLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVCINGLMLLEIKDTEKYCALAPN 625 + V + T L P E P V +CI + + K +KY + + Sbjct 783 GSDFSLADSVVEVVTTSLTPCG-----YSEPPKVADKICIVDNVYMA-KAGDKYYPVVVD 836 Query 626 MMV 628 V Sbjct 837 GHV 839
>sp|P0C6W8|R1AB_CVBLU Replicase polyprotein 1ab OS=Bovine coronavirus
(strain 98TXSF-110-LUN) OX=233264 GN=rep PE=3 SV=1 Length=7094 Score = 81.0 bits (198), Expect = 3e-14, Method: Composition-based stats. Identities = 113/663 (17%), Positives = 196/663 (30%), Gaps = 114/663 (17%) Query 5 YVDNNFCGPDG---YPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAWY 61 YVD C G LE D + KA + Q D +AW+ Sbjct 252 YVDQYGCDYTGGLADGLEAYADKTLQEMKALFPIWSQELPFDVT------------VAWH 299 Query 62 TERSEKSY--ELQTPFEIKLAKKF-----DTFNGEC----PNFVFPLNSIIKTIQPRVEK 110 R + Y LQ+ I+ D +G P V+ +SII Q + Sbjct 300 VVR-DPRYVMRLQSASTIRSVAYVANPTEDLCDGSVVIKEPVHVYADDSIILR-QHNLVD 357 Query 111 KKLDGFMGRIRSVYPVASPN--ECNQMCLSTLMKC--DHCGETSWQTGDFVKATCE-FCG 165 +M V + +C + + C D C W G+ + CG Sbjct 358 IMSCFYMEADAVVNAFYGVDLKDCGFVMQFGYIDCEQDLCDFKGWVPGNMIDGFACTTCG 417 Query 166 TENLTKEGA-TTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTI 224 T + + G LP N V+ A + G + S Y G + Sbjct 418 HVYETGDLLAQSSGVLPVNPVLHTKSAAGYGG-FGCKDSFTLY------------GQTVV 464 Query 225 AFGGCVFSYVGCHNKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLE--------ILQK 276 FGGCV+ W+P +++ ++ G+V G G + E L Sbjct 465 YFGGCVY----WSPARNIWIPILKSSV-KSYDGLVYTGVVGCKAIVKETNLICKALYLDY 519 Query 277 EKVNINIVGDFKLNEEIAIILASFSASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKA 336 + + +L + + + ++ +DY ++ S F V Sbjct 520 VQHKCGNLHQRELLGVSDVWHKQLLLNRGVYKPLLENIDYFNMRRAKFSLETFTVCADGF 579 Query 337 KKGAWNIGEQKSILSPLYAFASEAARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQY 396 + ++ A + +A A I + Sbjct 580 MPFLLDDLVPRAY---YLAVSGQAFC---------------------DYADKICHAVVSK 615 Query 397 SLRLIDAMMFTSDLATNNLVVMAYITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFK 456 S L+D + + Y+ +V L +Q ++ + K+ K Sbjct 616 SKELLDV------SLDSLSAAIHYLNSKIVDL-AQHFSDFGTSFVSKIVHFF-----KTF 663 Query 457 EGVEFLRDGWEIVKFISTCACEIVGGQIVTCAK---EIKESVQTFFKLVNKFLALCADSI 513 L W + + A +V I Q F + L + Sbjct 664 TTSTALAFAWVLFHVL-HGAYIVVESDIYFVKNIPRYASAVAQAFRSVAKVVLDSLRVTF 722 Query 514 IIGGA-----KLKALNLGETFVTHSKGLYRKCVKSREETGLLMPLK---APKEIIFLEGE 565 I G + + + G +GL + L MP + A ++ I+L+G Sbjct 723 IDGLSCFKIGRRRICLSGSKIYEVERGLLHSSQLPLDVYDLTMPSQVQKAKQKPIYLKGS 782 Query 566 TLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVCINGLMLLEIKDTEKYCALAPN 625 + V + T L P E P V +CI + + K +KY + + Sbjct 783 GSDFSLADSVVEVVTTSLTPCG-----YSEPPKVADKICIVDNVYMA-KAGDKYYPVVVD 836 Query 626 MMV 628 V Sbjct 837 GHV 839
>sp|P0C6T8|R1A_CVBEN Replicase polyprotein 1a OS=Bovine coronavirus
(strain 98TXSF-110-ENT) OX=233262 GN=1a PE=3 SV=1 Length=4383 Score = 80.6 bits (197), Expect = 3e-14, Method: Composition-based stats. Identities = 113/663 (17%), Positives = 196/663 (30%), Gaps = 114/663 (17%) Query 5 YVDNNFCGPDG---YPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAWY 61 YVD C G LE D + KA + Q D +AW+ Sbjct 252 YVDQYGCDYTGGLADGLEAYADKTLQEMKALFPIWSQELPFDVT------------VAWH 299 Query 62 TERSEKSY--ELQTPFEIKLAKKF-----DTFNGEC----PNFVFPLNSIIKTIQPRVEK 110 R + Y LQ+ I+ D +G P V+ +SII Q + Sbjct 300 VVR-DPRYVMRLQSASTIRSVAYVANPTEDLCDGSVVIKEPVHVYADDSIILR-QHNLVD 357 Query 111 KKLDGFMGRIRSVYPVASPN--ECNQMCLSTLMKC--DHCGETSWQTGDFVKATCE-FCG 165 +M V + +C + + C D C W G+ + CG Sbjct 358 IMSCFYMEADAVVNAFYGVDLKDCGFVMQFGYIDCEQDLCDFKGWVPGNMIDGFACTTCG 417 Query 166 TENLTKEGA-TTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTI 224 T + + G LP N V+ A + G + S Y G + Sbjct 418 HVYETGDLLAQSSGVLPVNPVLHTKSAAGYGG-FGCKDSFTLY------------GQTVV 464 Query 225 AFGGCVFSYVGCHNKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLE--------ILQK 276 FGGCV+ W+P +++ ++ G+V G G + E L Sbjct 465 YFGGCVY----WSPARNIWIPILKSSV-KSYDGLVYTGVVGCKAIVKETNLICKALYLDY 519 Query 277 EKVNINIVGDFKLNEEIAIILASFSASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKA 336 + + +L + + + ++ +DY ++ S F V Sbjct 520 VQHKCGNLHQRELLGVSDVWHKQLLLNRGVYKPLLENIDYFNMRRAKFSLETFTVCADGF 579 Query 337 KKGAWNIGEQKSILSPLYAFASEAARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQY 396 + ++ A + +A A I + Sbjct 580 MPFLLDDLVPRAY---YLAVSGQAFC---------------------DYADKICHAVVSK 615 Query 397 SLRLIDAMMFTSDLATNNLVVMAYITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFK 456 S L+D + + Y+ +V L +Q ++ + K+ K Sbjct 616 SKELLDV------SLDSLSAAIHYLNSKIVDL-AQHFSDFGTSFVSKIVHFF-----KTF 663 Query 457 EGVEFLRDGWEIVKFISTCACEIVGGQIVTCAK---EIKESVQTFFKLVNKFLALCADSI 513 L W + + A +V I Q F + L + Sbjct 664 TTSTALAFAWVLFHVL-HGAYIVVESDIYFVKNIPRYASAVAQAFRSVAKVVLDSLRVTF 722 Query 514 IIGGA-----KLKALNLGETFVTHSKGLYRKCVKSREETGLLMPLK---APKEIIFLEGE 565 I G + + + G +GL + L MP + A ++ I+L+G Sbjct 723 IDGLSCFKIGRRRICLSGSKIYEVERGLLHSSQLPLDVYDLTMPSQVQKAKQKPIYLKGS 782 Query 566 TLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVCINGLMLLEIKDTEKYCALAPN 625 + V + T L P E P V +CI + + K +KY + + Sbjct 783 GSDFSLADSVVEVVTTSLTPCG-----YSEPPKVADKICIVDNVYMA-KAGDKYYPVVVD 836 Query 626 MMV 628 V Sbjct 837 GHV 839
>sp|P0C6T9|R1A_CVBLU Replicase polyprotein 1a OS=Bovine coronavirus
(strain 98TXSF-110-LUN) OX=233264 GN=1a PE=3 SV=1 Length=4383 Score = 80.2 bits (196), Expect = 4e-14, Method: Composition-based stats. Identities = 113/663 (17%), Positives = 196/663 (30%), Gaps = 114/663 (17%) Query 5 YVDNNFCGPDG---YPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAWY 61 YVD C G LE D + KA + Q D +AW+ Sbjct 252 YVDQYGCDYTGGLADGLEAYADKTLQEMKALFPIWSQELPFDVT------------VAWH 299 Query 62 TERSEKSY--ELQTPFEIKLAKKF-----DTFNGEC----PNFVFPLNSIIKTIQPRVEK 110 R + Y LQ+ I+ D +G P V+ +SII Q + Sbjct 300 VVR-DPRYVMRLQSASTIRSVAYVANPTEDLCDGSVVIKEPVHVYADDSIILR-QHNLVD 357 Query 111 KKLDGFMGRIRSVYPVASPN--ECNQMCLSTLMKC--DHCGETSWQTGDFVKATCE-FCG 165 +M V + +C + + C D C W G+ + CG Sbjct 358 IMSCFYMEADAVVNAFYGVDLKDCGFVMQFGYIDCEQDLCDFKGWVPGNMIDGFACTTCG 417 Query 166 TENLTKEGA-TTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTI 224 T + + G LP N V+ A + G + S Y G + Sbjct 418 HVYETGDLLAQSSGVLPVNPVLHTKSAAGYGG-FGCKDSFTLY------------GQTVV 464 Query 225 AFGGCVFSYVGCHNKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLE--------ILQK 276 FGGCV+ W+P +++ ++ G+V G G + E L Sbjct 465 YFGGCVY----WSPARNIWIPILKSSV-KSYDGLVYTGVVGCKAIVKETNLICKALYLDY 519 Query 277 EKVNINIVGDFKLNEEIAIILASFSASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKA 336 + + +L + + + ++ +DY ++ S F V Sbjct 520 VQHKCGNLHQRELLGVSDVWHKQLLLNRGVYKPLLENIDYFNMRRAKFSLETFTVCADGF 579 Query 337 KKGAWNIGEQKSILSPLYAFASEAARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQY 396 + ++ A + +A A I + Sbjct 580 MPFLLDDLVPRAY---YLAVSGQAFC---------------------DYADKICHAVVSK 615 Query 397 SLRLIDAMMFTSDLATNNLVVMAYITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFK 456 S L+D + + Y+ +V L +Q ++ + K+ K Sbjct 616 SKELLDV------SLDSLSAAIHYLNSKIVDL-AQHFSDFGTSFVSKIVHFF-----KTF 663 Query 457 EGVEFLRDGWEIVKFISTCACEIVGGQIVTCAK---EIKESVQTFFKLVNKFLALCADSI 513 L W + + A +V I Q F + L + Sbjct 664 TTSTALAFAWVLFHVL-HGAYIVVESDIYFVKNIPRYASAVAQAFRSVAKVVLDSLRVTF 722 Query 514 IIGGA-----KLKALNLGETFVTHSKGLYRKCVKSREETGLLMPLK---APKEIIFLEGE 565 I G + + + G +GL + L MP + A ++ I+L+G Sbjct 723 IDGLSCFKIGRRRICLSGSKIYEVERGLLHSSQLPLDVYDLTMPSQVQKAKQKPIYLKGS 782 Query 566 TLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVCINGLMLLEIKDTEKYCALAPN 625 + V + T L P E P V +CI + + K +KY + + Sbjct 783 GSDFSLADSVVEVVTTSLTPCG-----YSEPPKVADKICIVDNVYMA-KAGDKYYPVVVD 836 Query 626 MMV 628 V Sbjct 837 GHV 839
>sp|P0C6W9|R1AB_CVBM Replicase polyprotein 1ab OS=Bovine coronavirus
(strain Mebus) OX=11132 GN=rep PE=3 SV=1 Length=7094 Score = 80.6 bits (197), Expect = 4e-14, Method: Composition-based stats. Identities = 115/672 (17%), Positives = 197/672 (29%), Gaps = 132/672 (20%) Query 5 YVDNNFCGPDG---YPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAWY 61 YVD C G LE D + KA + Q D +AW+ Sbjct 252 YVDQYGCDYTGGLADGLEAYADKTLQEMKALFPIWSQELPFDVT------------VAWH 299 Query 62 TERSEKSY--ELQTPFEIKLAKKF-----DTFNGEC----PNFVFPLNSIIKTIQPRVEK 110 R + Y LQ+ I+ D +G P V+ +SII Q + Sbjct 300 VVR-DPRYVMRLQSASTIRSVAYVANPTEDLCDGSVVIKEPVHVYADDSIILR-QHNLVD 357 Query 111 KKLDGFMGRIRSVYPVASPN--ECNQMCLSTLMKC--DHCGETSWQTGDFVKATCE-FCG 165 +M V + +C + + C D C W G+ + CG Sbjct 358 IMSCFYMEADAVVNAFYGVDLKDCGFVMQFGYIDCEQDLCDFKGWVPGNMIDGFACTTCG 417 Query 166 TENLTKEGA-TTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTI 224 T + + G LP N V+ A + G + S Y G + Sbjct 418 HVYETGDLLAQSSGVLPVNPVLHTKSAAGYGG-FGCKDSFTLY------------GQTVV 464 Query 225 AFGGCVFSYVGCHNKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIV 284 FGGCV+ W+P +++ ++ G+V G G Sbjct 465 YFGGCVY----WSPARNIWIPILKSSV-KSYDGLVYTGVVGC------------------ 501 Query 285 GDFKLNEEIAIILASFSASTSAFVETVKGLDYKAFKQIVES-CGNFKVTKGKAKKGAW-- 341 A V+ + + V+ CGN + W Sbjct 502 --------------------KAIVKETNLICKALYLDYVQHKCGNLHQRELLGVSDVWHK 541 Query 342 ----NIGEQKSILSPLYAFASEAARVVRSIFSRTLETA-----QNSVRVLQKAAITILDG 392 N G K +L + F A+ F+ + + V A++ Sbjct 542 QLLLNRGVYKPLLENIDYFNMRRAKFSLETFTVCADGFMPFLLDDLVPRAYYLAVSG-QA 600 Query 393 ISQYSLRLIDAMM-----FTSDLATNNLVVMAYITGGVVQLTSQWLTNIFGTVYEKLKPV 447 Y+ ++ A++ + + Y+ +V L +Q ++ + K+ Sbjct 601 FCDYAGKICHAVVSKSKELLDVSLDSLGAAIHYLNSKIVDL-AQHFSDFGTSFVSKIVHF 659 Query 448 LDWLEEKFKEGVEFLRDGWEIVKFISTCACEIVGGQIVTCAK---EIKESVQTFFKLVNK 504 K L W + + A +V I Q F + Sbjct 660 F-----KTFTTSTALAFAWVLFHVL-HGAYIVVESDIYFVKNIPRYASAVAQAFRSVAKV 713 Query 505 FLALCADSIIIGGA-----KLKALNLGETFVTHSKGLYRKCVKSREETGLLMPLK---AP 556 L + I G + + + G +GL + L MP + Sbjct 714 VLDSLRVTFIDGLSCFKIGRRRICLSGSKIYEVERGLLHSSQLPLDVYDLTMPSQVQKTK 773 Query 557 KEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVCINGLMLLEIKDT 616 ++ I+L+G + V + T L P E P V +CI + + K Sbjct 774 QKPIYLKGSGSDFSLADSVVEVVTTSLTPCG-----YSEPPKVADKICIVDNVYMA-KAG 827 Query 617 EKYCALAPNMMV 628 +KY + + V Sbjct 828 DKYYPVVVDGHV 839
>sp|P0C6U0|R1A_CVBM Replicase polyprotein 1a OS=Bovine coronavirus
(strain Mebus) OX=11132 GN=1a PE=3 SV=1 Length=4383 Score = 79.8 bits (195), Expect = 5e-14, Method: Composition-based stats. Identities = 115/672 (17%), Positives = 197/672 (29%), Gaps = 132/672 (20%) Query 5 YVDNNFCGPDG---YPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAWY 61 YVD C G LE D + KA + Q D +AW+ Sbjct 252 YVDQYGCDYTGGLADGLEAYADKTLQEMKALFPIWSQELPFDVT------------VAWH 299 Query 62 TERSEKSY--ELQTPFEIKLAKKF-----DTFNGEC----PNFVFPLNSIIKTIQPRVEK 110 R + Y LQ+ I+ D +G P V+ +SII Q + Sbjct 300 VVR-DPRYVMRLQSASTIRSVAYVANPTEDLCDGSVVIKEPVHVYADDSIILR-QHNLVD 357 Query 111 KKLDGFMGRIRSVYPVASPN--ECNQMCLSTLMKC--DHCGETSWQTGDFVKATCE-FCG 165 +M V + +C + + C D C W G+ + CG Sbjct 358 IMSCFYMEADAVVNAFYGVDLKDCGFVMQFGYIDCEQDLCDFKGWVPGNMIDGFACTTCG 417 Query 166 TENLTKEGA-TTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTI 224 T + + G LP N V+ A + G + S Y G + Sbjct 418 HVYETGDLLAQSSGVLPVNPVLHTKSAAGYGG-FGCKDSFTLY------------GQTVV 464 Query 225 AFGGCVFSYVGCHNKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIV 284 FGGCV+ W+P +++ ++ G+V G G Sbjct 465 YFGGCVY----WSPARNIWIPILKSSV-KSYDGLVYTGVVGC------------------ 501 Query 285 GDFKLNEEIAIILASFSASTSAFVETVKGLDYKAFKQIVES-CGNFKVTKGKAKKGAW-- 341 A V+ + + V+ CGN + W Sbjct 502 --------------------KAIVKETNLICKALYLDYVQHKCGNLHQRELLGVSDVWHK 541 Query 342 ----NIGEQKSILSPLYAFASEAARVVRSIFSRTLETA-----QNSVRVLQKAAITILDG 392 N G K +L + F A+ F+ + + V A++ Sbjct 542 QLLLNRGVYKPLLENIDYFNMRRAKFSLETFTVCADGFMPFLLDDLVPRAYYLAVSG-QA 600 Query 393 ISQYSLRLIDAMM-----FTSDLATNNLVVMAYITGGVVQLTSQWLTNIFGTVYEKLKPV 447 Y+ ++ A++ + + Y+ +V L +Q ++ + K+ Sbjct 601 FCDYAGKICHAVVSKSKELLDVSLDSLGAAIHYLNSKIVDL-AQHFSDFGTSFVSKIVHF 659 Query 448 LDWLEEKFKEGVEFLRDGWEIVKFISTCACEIVGGQIVTCAK---EIKESVQTFFKLVNK 504 K L W + + A +V I Q F + Sbjct 660 F-----KTFTTSTALAFAWVLFHVL-HGAYIVVESDIYFVKNIPRYASAVAQAFRSVAKV 713 Query 505 FLALCADSIIIGGA-----KLKALNLGETFVTHSKGLYRKCVKSREETGLLMPLK---AP 556 L + I G + + + G +GL + L MP + Sbjct 714 VLDSLRVTFIDGLSCFKIGRRRICLSGSKIYEVERGLLHSSQLPLDVYDLTMPSQVQKTK 773 Query 557 KEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVCINGLMLLEIKDT 616 ++ I+L+G + V + T L P E P V +CI + + K Sbjct 774 QKPIYLKGSGSDFSLADSVVEVVTTSLTPCG-----YSEPPKVADKICIVDNVYMA-KAG 827 Query 617 EKYCALAPNMMV 628 +KY + + V Sbjct 828 DKYYPVVVDGHV 839
>sp|P0C6X6|R1AB_CVHOC Replicase polyprotein 1ab OS=Human coronavirus
OC43 OX=31631 GN=rep PE=1 SV=1 Length=7095 Score = 77.9 bits (190), Expect = 2e-13, Method: Composition-based stats. Identities = 118/674 (18%), Positives = 200/674 (30%), Gaps = 142/674 (21%) Query 5 YVDNNFCGPDGY---PLECIKDLLARAGKAS-CTLSEQL--DFIDTKRGVYCCREHEHEI 58 YVD C G LE D + KA T S++L D I + Sbjct 252 YVDQYGCDYTGSLADGLEAYADKTLQEMKALFPTWSQELPFDVI---------------V 296 Query 59 AWYTERSEKSY--ELQTPFEIKLAKKF-----DTFNGEC----PNFVFPLNSIIKTIQPR 107 AW+ R + Y LQ+ I D +G P V+ +SII Sbjct 297 AWHVVR-DPRYVMRLQSAATICSVAYVANPTEDLCDGSVVIKEPVHVYADDSIILRQYNL 355 Query 108 VEKKKLDGFMGR----IRSVYPVASPNECNQMCLSTLMKC--DHCGETSWQTGDFVKATC 161 + + F + + Y VA +C + + C D C W G+ + Sbjct 356 FDI--MSHFYMEADTVVNAFYGVA-LKDCGFVMQFGYIDCEQDSCDFKGWIPGNMIDGFA 412 Query 162 E-FCGTENLTKEGA-TTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRK 219 CG + + G LP N V+ A + G + S Y Sbjct 413 CTTCGHVYEVGDLIAQSSGVLPVNPVLHTKSAAGYGG-FGCKDSFTLY------------ 459 Query 220 GGRTIAFGGCVFSYVGCHNKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKV 279 G + FGGCV+ W+P +++ ++ +V G G Sbjct 460 GQTVVYFGGCVY----WSPARNIWIPILKSSV-KSYDSLVYTGVLGC------------- 501 Query 280 NINIVGDFKLNEEIAIILASFSASTSAFVETVKGLDYKAFKQIVES-CGNFKVTKGKAKK 338 A V+ + + V+ CGN + Sbjct 502 -------------------------KAIVKETNLICKALYLDYVQHKCGNLHQRELLGVS 536 Query 339 GAW------NIGEQKSILSPLYAFASEAARVVRSIFSRTLETA-----QNSVRVLQKAAI 387 W N G K +L + F A+ F+ + + V A+ Sbjct 537 DVWHKQLLINRGVYKPLLENIDYFNMRRAKFSLETFTVCADGFMPFLLDDLVPRAYYLAV 596 Query 388 TILDGISQYSLRLIDAMM-----FTSDLATNNLVVMAYITGGVVQLTSQWLTNIFGTVYE 442 + Y+ +L A++ + + Y+ +V L +Q ++ + Sbjct 597 SG-QAFCDYADKLCHAVVSKSKELLDVSLDSLGAAIHYLNSKIVDL-AQHFSDFGTSFVS 654 Query 443 KLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIVGGQIVTCAK---EIKESVQTFF 499 K+ K L W + + A +V I Q F Sbjct 655 KIVHFF-----KTFTTSTALAFAWVLFHVL-HGAYIVVESDIYFVKNIPRYASAVAQAFQ 708 Query 500 KLVNKFLALCADSIIIGGA-----KLKALNLGETFVTHSKGLYRKCVKSREETGLLMPLK 554 + L + I G + + + G +GL + L MP + Sbjct 709 SVAKVVLDSLRVTFIDGLSCFKIGRRRICLSGRKIYEVERGLLHSSQLPLDVYDLTMPSQ 768 Query 555 ---APKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVCINGLMLL 611 A ++ I+L+G + V + T L P E P V +CI + + Sbjct 769 VQKAKQKPIYLKGSGSDFSLADSVVEVVTTSLTPCG-----YSEPPKVADKICIVDNVYM 823 Query 612 EIKDTEKYCALAPN 625 K +KY + + Sbjct 824 A-KAGDKYYPVVVD 836
>sp|P0C6U7|R1A_CVHOC Replicase polyprotein 1a OS=Human coronavirus
OC43 OX=31631 GN=1a PE=1 SV=1 Length=4383 Score = 77.5 bits (189), Expect = 3e-13, Method: Composition-based stats. Identities = 118/674 (18%), Positives = 200/674 (30%), Gaps = 142/674 (21%) Query 5 YVDNNFCGPDGY---PLECIKDLLARAGKAS-CTLSEQL--DFIDTKRGVYCCREHEHEI 58 YVD C G LE D + KA T S++L D I + Sbjct 252 YVDQYGCDYTGSLADGLEAYADKTLQEMKALFPTWSQELPFDVI---------------V 296 Query 59 AWYTERSEKSY--ELQTPFEIKLAKKF-----DTFNGEC----PNFVFPLNSIIKTIQPR 107 AW+ R + Y LQ+ I D +G P V+ +SII Sbjct 297 AWHVVR-DPRYVMRLQSAATICSVAYVANPTEDLCDGSVVIKEPVHVYADDSIILRQYNL 355 Query 108 VEKKKLDGFMGR----IRSVYPVASPNECNQMCLSTLMKC--DHCGETSWQTGDFVKATC 161 + + F + + Y VA +C + + C D C W G+ + Sbjct 356 FDI--MSHFYMEADTVVNAFYGVA-LKDCGFVMQFGYIDCEQDSCDFKGWIPGNMIDGFA 412 Query 162 E-FCGTENLTKEGA-TTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRK 219 CG + + G LP N V+ A + G + S Y Sbjct 413 CTTCGHVYEVGDLIAQSSGVLPVNPVLHTKSAAGYGG-FGCKDSFTLY------------ 459 Query 220 GGRTIAFGGCVFSYVGCHNKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKV 279 G + FGGCV+ W+P +++ ++ +V G G Sbjct 460 GQTVVYFGGCVY----WSPARNIWIPILKSSV-KSYDSLVYTGVLGC------------- 501 Query 280 NINIVGDFKLNEEIAIILASFSASTSAFVETVKGLDYKAFKQIVES-CGNFKVTKGKAKK 338 A V+ + + V+ CGN + Sbjct 502 -------------------------KAIVKETNLICKALYLDYVQHKCGNLHQRELLGVS 536 Query 339 GAW------NIGEQKSILSPLYAFASEAARVVRSIFSRTLETA-----QNSVRVLQKAAI 387 W N G K +L + F A+ F+ + + V A+ Sbjct 537 DVWHKQLLINRGVYKPLLENIDYFNMRRAKFSLETFTVCADGFMPFLLDDLVPRAYYLAV 596 Query 388 TILDGISQYSLRLIDAMM-----FTSDLATNNLVVMAYITGGVVQLTSQWLTNIFGTVYE 442 + Y+ +L A++ + + Y+ +V L +Q ++ + Sbjct 597 SG-QAFCDYADKLCHAVVSKSKELLDVSLDSLGAAIHYLNSKIVDL-AQHFSDFGTSFVS 654 Query 443 KLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIVGGQIVTCAK---EIKESVQTFF 499 K+ K L W + + A +V I Q F Sbjct 655 KIVHFF-----KTFTTSTALAFAWVLFHVL-HGAYIVVESDIYFVKNIPRYASAVAQAFQ 708 Query 500 KLVNKFLALCADSIIIGGA-----KLKALNLGETFVTHSKGLYRKCVKSREETGLLMPLK 554 + L + I G + + + G +GL + L MP + Sbjct 709 SVAKVVLDSLRVTFIDGLSCFKIGRRRICLSGRKIYEVERGLLHSSQLPLDVYDLTMPSQ 768 Query 555 ---APKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVCINGLMLL 611 A ++ I+L+G + V + T L P E P V +CI + + Sbjct 769 VQKAKQKPIYLKGSGSDFSLADSVVEVVTTSLTPCG-----YSEPPKVADKICIVDNVYM 823 Query 612 EIKDTEKYCALAPN 625 K +KY + + Sbjct 824 A-KAGDKYYPVVVD 836
>sp|P0C6X0|R1AB_CVBQ Replicase polyprotein 1ab OS=Bovine coronavirus
(strain Quebec) OX=11133 GN=rep PE=3 SV=1 Length=7059 Score = 76.7 bits (187), Expect = 5e-13, Method: Composition-based stats. Identities = 117/672 (17%), Positives = 199/672 (30%), Gaps = 132/672 (20%) Query 5 YVDNNFCGPDG---YPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAWY 61 YVD C G LE D + KA + Q D +AW+ Sbjct 252 YVDQYGCDYTGGLADGLEAYADKTLQEMKALFPIWSQELPFDVT------------VAWH 299 Query 62 TERSEKSY--ELQTPFEIKLAKKF-----DTFNGEC----PNFVFPLNSIIKTIQPRVEK 110 R + Y LQ+ I+ D +G P V+ +SII Q + Sbjct 300 VVR-DPRYVMRLQSASTIRSVAYVANPTEDLCDGSVVIKEPVHVYADDSIILR-QHNLVD 357 Query 111 KKLDGFMGRIRSVYPVASPN--ECNQMCLSTLMKC--DHCGETSWQTGDFVKATCE-FCG 165 +M V + +C + + C D C W G+ + CG Sbjct 358 IMSCFYMEADAVVNAFYGVDLKDCGFVMQFGYIDCEQDLCDFKGWVPGNMIDGFACTTCG 417 Query 166 TENLTKEGA-TTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTI 224 T + + G LP N V+ A + G + S Y G + Sbjct 418 HVYETGDLLAQSSGVLPVNPVLHTKSAAGYGG-FGCKDSFTLY------------GQTVV 464 Query 225 AFGGCVFSYVGCHNKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIV 284 FGGCV+ W+P +++ ++ G+V G G Sbjct 465 YFGGCVY----WSPARNIWIPILKSSV-KSYDGLVYTGVVGC------------------ 501 Query 285 GDFKLNEEIAIILASFSASTSAFVETVKGLDYKAFKQIVES-CGNFKVTKGKAKKGAW-- 341 A V+ + + V+ CGN + W Sbjct 502 --------------------KAIVKETNLICKALYLDYVQHKCGNLHQRELLGVSDVWHK 541 Query 342 ----NIGEQKSILSPLYAFASEAARVVRSIFSRTLETA-----QNSVRVLQKAAITILDG 392 N G K +L + F A+ F+ + + V A++ Sbjct 542 QLLLNRGVYKPLLENIDYFNMRRAKFSLETFTVCADGFMPFLLDDLVPRAYYLAVSG-QA 600 Query 393 ISQYSLRLIDAMMFTSDLATNNLV-----VMAYITGGVVQLTSQWLTNIFGTVYEKLKPV 447 Y+ ++ A++ S + V + Y+ +V L +Q ++ + K+ Sbjct 601 FCDYAGKICHAVVSKSKELLDVSVDSLGAAIHYLNSKIVDL-AQHFSDFGTSFVSKIVHF 659 Query 448 LDWLEEKFKEGVEFLRDGWEIVKFISTCACEIVGGQIVT---CAKEIKESVQTFFKLVNK 504 K L W + + A +V I + Q F Sbjct 660 F-----KTFTTSTALAFAWVLFHVL-HGAYIVVESDIYFGKNIPRYASAVAQAFRSGAKV 713 Query 505 FLALCADSIIIGGA-----KLKALNLGETFVTHSKGLYRKCVKSREETGLLMPLK---AP 556 L + I G + + + G +GL + L MP + Sbjct 714 GLDSLRVTFIDGLSCFKIGRRRICLSGSKIYEVERGLLHSSQLPLDVYDLTMPSQVQKTK 773 Query 557 KEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVCINGLMLLEIKDT 616 ++ I+L+G + V + T L P E P V +CI + + K Sbjct 774 QKGIYLKGSGSDFSLADSVVEVVTTSLTPCG-----YSEPPKVADKICIVDNVYMA-KAG 827 Query 617 EKYCALAPNMMV 628 +KY + + V Sbjct 828 DKYYPVVVDGHV 839
>sp|P0C6U1|R1A_CVBQ Replicase polyprotein 1a OS=Bovine coronavirus
(strain Quebec) OX=11133 GN=1a PE=3 SV=1 Length=4383 Score = 76.3 bits (186), Expect = 6e-13, Method: Composition-based stats. Identities = 117/672 (17%), Positives = 199/672 (30%), Gaps = 132/672 (20%) Query 5 YVDNNFCGPDG---YPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAWY 61 YVD C G LE D + KA + Q D +AW+ Sbjct 252 YVDQYGCDYTGGLADGLEAYADKTLQEMKALFPIWSQELPFDVT------------VAWH 299 Query 62 TERSEKSY--ELQTPFEIKLAKKF-----DTFNGEC----PNFVFPLNSIIKTIQPRVEK 110 R + Y LQ+ I+ D +G P V+ +SII Q + Sbjct 300 VVR-DPRYVMRLQSASTIRSVAYVANPTEDLCDGSVVIKEPVHVYADDSIILR-QHNLVD 357 Query 111 KKLDGFMGRIRSVYPVASPN--ECNQMCLSTLMKC--DHCGETSWQTGDFVKATCE-FCG 165 +M V + +C + + C D C W G+ + CG Sbjct 358 IMSCFYMEADAVVNAFYGVDLKDCGFVMQFGYIDCEQDLCDFKGWVPGNMIDGFACTTCG 417 Query 166 TENLTKEGA-TTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTI 224 T + + G LP N V+ A + G + S Y G + Sbjct 418 HVYETGDLLAQSSGVLPVNPVLHTKSAAGYGG-FGCKDSFTLY------------GQTVV 464 Query 225 AFGGCVFSYVGCHNKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIV 284 FGGCV+ W+P +++ ++ G+V G G Sbjct 465 YFGGCVY----WSPARNIWIPILKSSV-KSYDGLVYTGVVGC------------------ 501 Query 285 GDFKLNEEIAIILASFSASTSAFVETVKGLDYKAFKQIVES-CGNFKVTKGKAKKGAW-- 341 A V+ + + V+ CGN + W Sbjct 502 --------------------KAIVKETNLICKALYLDYVQHKCGNLHQRELLGVSDVWHK 541 Query 342 ----NIGEQKSILSPLYAFASEAARVVRSIFSRTLETA-----QNSVRVLQKAAITILDG 392 N G K +L + F A+ F+ + + V A++ Sbjct 542 QLLLNRGVYKPLLENIDYFNMRRAKFSLETFTVCADGFMPFLLDDLVPRAYYLAVSG-QA 600 Query 393 ISQYSLRLIDAMMFTSDLATNNLV-----VMAYITGGVVQLTSQWLTNIFGTVYEKLKPV 447 Y+ ++ A++ S + V + Y+ +V L +Q ++ + K+ Sbjct 601 FCDYAGKICHAVVSKSKELLDVSVDSLGAAIHYLNSKIVDL-AQHFSDFGTSFVSKIVHF 659 Query 448 LDWLEEKFKEGVEFLRDGWEIVKFISTCACEIVGGQIVT---CAKEIKESVQTFFKLVNK 504 K L W + + A +V I + Q F Sbjct 660 F-----KTFTTSTALAFAWVLFHVL-HGAYIVVESDIYFGKNIPRYASAVAQAFRSGAKV 713 Query 505 FLALCADSIIIGGA-----KLKALNLGETFVTHSKGLYRKCVKSREETGLLMPLK---AP 556 L + I G + + + G +GL + L MP + Sbjct 714 GLDSLRVTFIDGLSCFKIGRRRICLSGSKIYEVERGLLHSSQLPLDVYDLTMPSQVQKTK 773 Query 557 KEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVCINGLMLLEIKDT 616 ++ I+L+G + V + T L P E P V +CI + + K Sbjct 774 QKGIYLKGSGSDFSLADSVVEVVTTSLTPCG-----YSEPPKVADKICIVDNVYMA-KAG 827 Query 617 EKYCALAPNMMV 628 +KY + + V Sbjct 828 DKYYPVVVDGHV 839
>sp|P0C6Y5|R1AB_CVPPU Replicase polyprotein 1ab OS=Porcine transmissible
gastroenteritis coronavirus (strain Purdue) OX=11151 GN=rep PE=1 SV=1 Length=6684 Score = 67.9 bits (164), Expect = 2e-10, Method: Composition-based stats. Identities = 65/354 (18%), Positives = 102/354 (29%), Gaps = 78/354 (22%) Query 5 YVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAWYTER 64 YVD CG DG P+ + D+ + E+ AW T R Sbjct 113 YVDQYMCGADGKPV---------------IEGDFKDYF-GDEDIIEFEGEEYHCAWTTVR 156 Query 65 SEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRIRSVY 124 EK QT F I+ + + P N + + P V+K + +Y Sbjct 157 DEKPLNQQTLFTIQEIQYNLDIPHKLP------NCATRHVAPPVKKNSKIVLSEDYKKLY 210 Query 125 PVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKAT-CEFCGTENLTKEGATTCGYLPQN 183 + S M C + T F+ AT CG+E+ T Sbjct 211 ---------DIFGSPFMGNGDCLSKCFDTLHFIAATLRCPCGSESSGVGDWTG------- 254 Query 184 AVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKCAYW 243 K C G +L + + T + G F CV Y G + W Sbjct 255 --FKTACCGLSGKVKGV--TLGDIKPGDAVVTSMSAGKGVKFFANCVLQYAGDVEGVSIW 310 Query 244 -------------------------VPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEK 278 P + + + C+ G + Sbjct 311 KVIKTFTVDETVCTPGFEGELNDFIKPESKSLVACSVKRAFITGD----------IDDAV 360 Query 279 VNINIVGDFKLNEEIAIILASFSASTSAFVETVKGLDYKAFKQIVESCGNFKVT 332 + I G L+ + + T FV+ L A+K + E CG+ +T Sbjct 361 HDCIITGKLDLSTNLFGNVGLLFKKTPWFVQKCGALFVDAWKVVEELCGSLTLT 414 Score = 40.1 bits (92), Expect = 0.077, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 61/175 (35%), Gaps = 13/175 (7%) Query 463 RDGWEIVKFISTCACEIV--GGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKL 520 + +E+V + T A IV V +K+ V K++ K + I I G + Sbjct 416 KQIYEVVASLCTSAFTIVNYKPTFVVPDNRVKDLVDKCVKVLVKAFDVFTQIITIAGIEA 475 Query 521 KALNLGETFVTHSKGLYRKCVKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKT 580 K LG ++ + L L+ K+ LE T ++ V + Sbjct 476 KCFVLGAKYLLFNNAL----------VKLVSVKILGKKQKGLECAFFATSLVGATVNVTP 525 Query 581 GDLQPLEQPTSEAVEAPLVGT-PVCINGLMLLEIKDTEKYCALAPNMMVTNNTFT 634 + ++ + G + I G M + +PN ++TNN F Sbjct 526 KRTETATISLNKVDDVVAPGEGYIVIVGDMAFYKSGEYYFMMSSPNFVLTNNVFK 580
>sp|P0C6V2|R1A_CVPPU Replicase polyprotein 1a OS=Porcine transmissible
gastroenteritis coronavirus (strain Purdue) OX=11151 GN=1a PE=1 SV=1 Length=4017 Score = 67.9 bits (164), Expect = 3e-10, Method: Composition-based stats. Identities = 65/354 (18%), Positives = 102/354 (29%), Gaps = 78/354 (22%) Query 5 YVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAWYTER 64 YVD CG DG P+ + D+ + E+ AW T R Sbjct 113 YVDQYMCGADGKPV---------------IEGDFKDYF-GDEDIIEFEGEEYHCAWTTVR 156 Query 65 SEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRIRSVY 124 EK QT F I+ + + P N + + P V+K + +Y Sbjct 157 DEKPLNQQTLFTIQEIQYNLDIPHKLP------NCATRHVAPPVKKNSKIVLSEDYKKLY 210 Query 125 PVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKAT-CEFCGTENLTKEGATTCGYLPQN 183 + S M C + T F+ AT CG+E+ T Sbjct 211 ---------DIFGSPFMGNGDCLSKCFDTLHFIAATLRCPCGSESSGVGDWTG------- 254 Query 184 AVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKCAYW 243 K C G +L + + T + G F CV Y G + W Sbjct 255 --FKTACCGLSGKVKGV--TLGDIKPGDAVVTSMSAGKGVKFFANCVLQYAGDVEGVSIW 310 Query 244 -------------------------VPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEK 278 P + + + C+ G + Sbjct 311 KVIKTFTVDETVCTPGFEGELNDFIKPESKSLVACSVKRAFITGD----------IDDAV 360 Query 279 VNINIVGDFKLNEEIAIILASFSASTSAFVETVKGLDYKAFKQIVESCGNFKVT 332 + I G L+ + + T FV+ L A+K + E CG+ +T Sbjct 361 HDCIITGKLDLSTNLFGNVGLLFKKTPWFVQKCGALFVDAWKVVEELCGSLTLT 414 Score = 40.1 bits (92), Expect = 0.076, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 61/175 (35%), Gaps = 13/175 (7%) Query 463 RDGWEIVKFISTCACEIV--GGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKL 520 + +E+V + T A IV V +K+ V K++ K + I I G + Sbjct 416 KQIYEVVASLCTSAFTIVNYKPTFVVPDNRVKDLVDKCVKVLVKAFDVFTQIITIAGIEA 475 Query 521 KALNLGETFVTHSKGLYRKCVKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKT 580 K LG ++ + L L+ K+ LE T ++ V + Sbjct 476 KCFVLGAKYLLFNNAL----------VKLVSVKILGKKQKGLECAFFATSLVGATVNVTP 525 Query 581 GDLQPLEQPTSEAVEAPLVGT-PVCINGLMLLEIKDTEKYCALAPNMMVTNNTFT 634 + ++ + G + I G M + +PN ++TNN F Sbjct 526 KRTETATISLNKVDDVVAPGEGYIVIVGDMAFYKSGEYYFMMSSPNFVLTNNVFK 580
>sp|P0C6X8|R1AB_CVM2 Replicase polyprotein 1ab OS=Murine coronavirus
(strain 2) OX=76344 GN=rep PE=3 SV=1 Length=7124 Score = 65.9 bits (159), Expect = 1e-09, Method: Composition-based stats. Identities = 86/538 (16%), Positives = 164/538 (30%), Gaps = 102/538 (19%) Query 5 YVDNNFC---GPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCR-EHEHEIAW 60 ++D C G LE D CTL E + V+C ++E +AW Sbjct 253 FLDQYGCDYTGRLAKGLEDYGD---------CTLEEMKELFP----VWCDSLDNEVVVAW 299 Query 61 YTERSEKSYEL-QTPFEIKLA-----KKFDTFNGEC----PNFVFPLNSIIKTIQPRVEK 110 + +R ++ QT I+ D +G+ P + N+I+K + PR+ + Sbjct 300 HVDRDPRAVMRLQTLATIRSIGYVGQPTEDLVDGDVVVREPAHLLAANAIVKRL-PRLVE 358 Query 111 KKLDGFMGRIRSVYPVASPNECNQMCLSTLMKC--DHCGETSWQTGDFVKATCE-FCGTE 167 L Y +C + + C D C W G+ + C Sbjct 359 TMLYTDSSVTEFCY-KTKLCDCGFITQFGYVDCCGDACDFRGWVPGNMMDGFLCPGCSKS 417 Query 168 NLTKE-GATTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAF 226 + E A + G +P+ V+ +++ S Y G + F Sbjct 418 YMPWELEAQSSGVIPKGGVL-----FTQSTDTVNRESFKLY------------GHAVVPF 460 Query 227 GGCVF--SYVGCHNKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNI--N 282 G V+ Y G W+P +++ ++ + G G +++ ++ + Sbjct 461 GSAVYWSPYPG------MWLPVIWSSV-KSYADLTYTGVVGC-KAIVQETDAICRSLYMD 512 Query 283 IVGDFKLNEEIAIILASFSASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWN 342 V N E IL GLD +Q++ V +G N Sbjct 513 YVQHKCGNLEQRAIL---------------GLDDVYHRQLL-------VNRGDYSLLLEN 550 Query 343 IGEQKSILSPLYAFASEAARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQ----YSL 398 + +E A + + + + I + +S Sbjct 551 VDL-------FVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSMMVNFSH 603 Query 399 RLIDAMMFTSDLATNNLVVMAYITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEG 458 + D M + L +++ V V + + V K+ D + Sbjct 604 EVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVRKITEWFDLAVDTAASA 663 Query 459 VEFLRDGWEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIG 516 +L + + G I + + E V+ F F + DS+ + Sbjct 664 AGWL------CYQLVNGLFAVANGGITFLSD-VPELVKNFVDKFKVFFKVLIDSMSVS 714
>sp|P0C6Y4|R1AB_PEDV7 Replicase polyprotein 1ab OS=Porcine epidemic
diarrhea virus (strain CV777) OX=229032 GN=rep PE=1 SV=1 Length=6781 Score = 65.6 bits (158), Expect = 1e-09, Method: Composition-based stats. Identities = 42/191 (22%), Positives = 67/191 (35%), Gaps = 28/191 (15%) Query 6 VDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAWYTERS 65 VD CG DG P+ L + + ++ D G+ + AW ERS Sbjct 115 VDQYMCGADGKPV-----LQESEWEYTDFFADSEDGQLNIAGITYVK------AWIVERS 163 Query 66 EKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTI-QPRVEK-----KKLDGFMGR 119 + SY Q IK T+ F + +K P+++K + L Sbjct 164 DVSYASQNLTSIKSITYCSTYE-----HTFLDGTAMKVARTPKIKKNVVLSEPLATIYRE 218 Query 120 IRSVYPVASPNECNQM----CLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGAT 175 I S + + + + L +KC CG W GD+ CG + Sbjct 219 IGSPFVDNGSDARSIIRRPVFLHAFVKCK-CGSYHWTVGDWTSYVSTCCGFK-CKPVLVA 276 Query 176 TCGYLPQNAVV 186 +C +P + VV Sbjct 277 SCSAMPGSVVV 287
>sp|P0C6V6|R1A_PEDV7 Replicase polyprotein 1a OS=Porcine epidemic
diarrhea virus (strain CV777) OX=229032 GN=1a PE=1 SV=1 Length=4117 Score = 65.6 bits (158), Expect = 1e-09, Method: Composition-based stats. Identities = 42/191 (22%), Positives = 67/191 (35%), Gaps = 28/191 (15%) Query 6 VDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAWYTERS 65 VD CG DG P+ L + + ++ D G+ + AW ERS Sbjct 115 VDQYMCGADGKPV-----LQESEWEYTDFFADSEDGQLNIAGITYVK------AWIVERS 163 Query 66 EKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTI-QPRVEK-----KKLDGFMGR 119 + SY Q IK T+ F + +K P+++K + L Sbjct 164 DVSYASQNLTSIKSITYCSTYE-----HTFLDGTAMKVARTPKIKKNVVLSEPLATIYRE 218 Query 120 IRSVYPVASPNECNQM----CLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGAT 175 I S + + + + L +KC CG W GD+ CG + Sbjct 219 IGSPFVDNGSDARSIIRRPVFLHAFVKCK-CGSYHWTVGDWTSYVSTCCGFK-CKPVLVA 276 Query 176 TCGYLPQNAVV 186 +C +P + VV Sbjct 277 SCSAMPGSVVV 287
>sp|P0C6U9|R1A_CVM2 Replicase polyprotein 1a OS=Murine coronavirus
(strain 2) OX=76344 GN=1a PE=3 SV=1 Length=4416 Score = 65.2 bits (157), Expect = 2e-09, Method: Composition-based stats. Identities = 86/538 (16%), Positives = 164/538 (30%), Gaps = 102/538 (19%) Query 5 YVDNNFC---GPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCR-EHEHEIAW 60 ++D C G LE D CTL E + V+C ++E +AW Sbjct 253 FLDQYGCDYTGRLAKGLEDYGD---------CTLEEMKELFP----VWCDSLDNEVVVAW 299 Query 61 YTERSEKSYEL-QTPFEIKLA-----KKFDTFNGEC----PNFVFPLNSIIKTIQPRVEK 110 + +R ++ QT I+ D +G+ P + N+I+K + PR+ + Sbjct 300 HVDRDPRAVMRLQTLATIRSIGYVGQPTEDLVDGDVVVREPAHLLAANAIVKRL-PRLVE 358 Query 111 KKLDGFMGRIRSVYPVASPNECNQMCLSTLMKC--DHCGETSWQTGDFVKATCE-FCGTE 167 L Y +C + + C D C W G+ + C Sbjct 359 TMLYTDSSVTEFCY-KTKLCDCGFITQFGYVDCCGDACDFRGWVPGNMMDGFLCPGCSKS 417 Query 168 NLTKE-GATTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAF 226 + E A + G +P+ V+ +++ S Y G + F Sbjct 418 YMPWELEAQSSGVIPKGGVL-----FTQSTDTVNRESFKLY------------GHAVVPF 460 Query 227 GGCVF--SYVGCHNKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNI--N 282 G V+ Y G W+P +++ ++ + G G +++ ++ + Sbjct 461 GSAVYWSPYPG------MWLPVIWSSV-KSYADLTYTGVVGC-KAIVQETDAICRSLYMD 512 Query 283 IVGDFKLNEEIAIILASFSASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWN 342 V N E IL GLD +Q++ V +G N Sbjct 513 YVQHKCGNLEQRAIL---------------GLDDVYHRQLL-------VNRGDYSLLLEN 550 Query 343 IGEQKSILSPLYAFASEAARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQ----YSL 398 + +E A + + + + I + +S Sbjct 551 VDL-------FVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSMMVNFSH 603 Query 399 RLIDAMMFTSDLATNNLVVMAYITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEG 458 + D M + L +++ V V + + V K+ D + Sbjct 604 EVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVRKITEWFDLAVDTAASA 663 Query 459 VEFLRDGWEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIG 516 +L + + G I + + E V+ F F + DS+ + Sbjct 664 AGWL------CYQLVNGLFAVANGGITFLSD-VPELVKNFVDKFKVFFKVLIDSMSVS 714
>sp|P0C6Y0|R1AB_CVMJH Replicase polyprotein 1ab OS=Murine coronavirus
(strain JHM) OX=11144 GN=rep PE=1 SV=1 Length=7180 Score = 64.4 bits (155), Expect = 3e-09, Method: Composition-based stats. Identities = 78/530 (15%), Positives = 165/530 (31%), Gaps = 86/530 (16%) Query 5 YVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAWYTER 64 +VD C G C+ L G + + ++L + ++E +AW+ +R Sbjct 253 FVDQYGCDYTG----CLAKGLEDYGDLTLSEMKELSPVWRDSL-----DNEVVVAWHVDR 303 Query 65 SEKSYEL-QTPFEIKLAKKF-----DTFNGEC----PNFVFPLNSIIKTIQPRVEKKKLD 114 ++ QT ++ + D +G+ P + N+I+K + PR+ + L Sbjct 304 DPRAVMRLQTLATVRSIEYVGQPIEDMVDGDVVMREPAHLLAPNAIVKRL-PRLVETMLY 362 Query 115 GFMGRIRSVYPVASPNECNQMCLSTLMKC--DHCGETSWQTGDFVKATCE-FCGTENLTK 171 Y +C + + C D CG W G+ + C + Sbjct 363 TDSSVTEFCY-KTKLCDCGFITQFGYVDCCGDTCGFRGWVPGNMMDGFPCPGCCKSYMPW 421 Query 172 E-GATTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCV 230 E A + G +P+ V+ +++ S Y G + FGG Sbjct 422 ELEAQSSGVIPEGGVL-----FTQSTDTVNRESFKLY------------GHAVVPFGGA- 463 Query 231 FSYVGCHNKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLN 290 +Y + W+P +++ +++ + G G + E + + F Sbjct 464 -AYWSPYPGM--WLPVIWSSV-KSYSYLTYTGVVGCKAIVQE--------TDAICRFLYM 511 Query 291 EEIAIILASFSASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSIL 350 + + + + GLD +Q++ V +G N+ Sbjct 512 DYVQHKCGNLE------QRAILGLDDVYHRQLL-------VNRGDYSLLLENVDL----- 553 Query 351 SPLYAFASEAARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQ----YSLRLIDAMMF 406 +E A + + + + I + +S ++D M Sbjct 554 --FVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSLMVNFSREVVDMCMD 611 Query 407 TSDLATNNLVVMAYITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGW 466 + L +++ V V + + V K+ D + +L Sbjct 612 MALLFMHDVKVATKYVKKVTGKVAVRFKALGIAVVRKITEWFDLAVDTAASAAGWL---- 667 Query 467 EIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIG 516 + + G I + + E V+ F F + DS+ + Sbjct 668 --CYQLVNGLFAVANGVITFIQE-VPELVKNFVDKFKTFFKVLIDSMSVS 714
>sp|P0C6V1|R1A_CVMJH Replicase polyprotein 1a OS=Murine coronavirus
(strain JHM) OX=11144 GN=1a PE=1 SV=1 Length=4474 Score = 64.0 bits (154), Expect = 4e-09, Method: Composition-based stats. Identities = 78/530 (15%), Positives = 165/530 (31%), Gaps = 86/530 (16%) Query 5 YVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAWYTER 64 +VD C G C+ L G + + ++L + ++E +AW+ +R Sbjct 253 FVDQYGCDYTG----CLAKGLEDYGDLTLSEMKELSPVWRDSL-----DNEVVVAWHVDR 303 Query 65 SEKSYEL-QTPFEIKLAKKF-----DTFNGEC----PNFVFPLNSIIKTIQPRVEKKKLD 114 ++ QT ++ + D +G+ P + N+I+K + PR+ + L Sbjct 304 DPRAVMRLQTLATVRSIEYVGQPIEDMVDGDVVMREPAHLLAPNAIVKRL-PRLVETMLY 362 Query 115 GFMGRIRSVYPVASPNECNQMCLSTLMKC--DHCGETSWQTGDFVKATCE-FCGTENLTK 171 Y +C + + C D CG W G+ + C + Sbjct 363 TDSSVTEFCY-KTKLCDCGFITQFGYVDCCGDTCGFRGWVPGNMMDGFPCPGCCKSYMPW 421 Query 172 E-GATTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCV 230 E A + G +P+ V+ +++ S Y G + FGG Sbjct 422 ELEAQSSGVIPEGGVL-----FTQSTDTVNRESFKLY------------GHAVVPFGGA- 463 Query 231 FSYVGCHNKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLN 290 +Y + W+P +++ +++ + G G + E + + F Sbjct 464 -AYWSPYPGM--WLPVIWSSV-KSYSYLTYTGVVGCKAIVQE--------TDAICRFLYM 511 Query 291 EEIAIILASFSASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSIL 350 + + + + GLD +Q++ V +G N+ Sbjct 512 DYVQHKCGNLE------QRAILGLDDVYHRQLL-------VNRGDYSLLLENVDL----- 553 Query 351 SPLYAFASEAARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQ----YSLRLIDAMMF 406 +E A + + + + I + +S ++D M Sbjct 554 --FVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSLMVNFSREVVDMCMD 611 Query 407 TSDLATNNLVVMAYITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGW 466 + L +++ V V + + V K+ D + +L Sbjct 612 MALLFMHDVKVATKYVKKVTGKVAVRFKALGIAVVRKITEWFDLAVDTAASAAGWL---- 667 Query 467 EIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIG 516 + + G I + + E V+ F F + DS+ + Sbjct 668 --CYQLVNGLFAVANGVITFIQE-VPELVKNFVDKFKTFFKVLIDSMSVS 714
>sp|P0C6X2|R1AB_CVHN1 Replicase polyprotein 1ab OS=Human coronavirus
HKU1 (isolate N1) OX=443239 GN=rep PE=3 SV=1 Length=7182 Score = 62.5 bits (150), Expect = 1e-08, Method: Composition-based stats. Identities = 99/608 (16%), Positives = 188/608 (31%), Gaps = 99/608 (16%) Query 5 YVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAWYTER 64 +VD C G +C L A + + ++ +AW+ R Sbjct 228 FVDQYGCDYSGKLADC---LQAYGHYSLQDMRQKQSVWLANCDFDIV------VAWHVVR 278 Query 65 -SEKSYELQTPFEIKLAKKF-----DTFNGEC----PNFVFPLNSIIKTIQPRVEKKKLD 114 S LQT I K D +G+ P + ++I+ + P + K Sbjct 279 DSRFVMRLQTIATICGIKYVAQPTEDVVDGDVVIREPVHLLSADAIVLKL-PSLMKVMTH 337 Query 115 GFMGRIRSVYPVASPNECNQMCLSTLMKC--DHCGETSWQTGDFVKATCE-FCGTENLTK 171 I+S+Y V +C + + C D+C W +G+ + C T + Sbjct 338 MDDFSIKSIYNVD-LCDCGFVMQYGYVDCFNDNCDFYGWVSGNMMDGFSCPLCCTVYDSS 396 Query 172 E-GATTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCV 230 E A + G +P+N V+ NS H + G FG C+ Sbjct 397 EVKAQSSGVIPENPVLFT------NSTDTVNHDSFNLY-----------GYSVTPFGSCI 439 Query 231 FSYVGCHNKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLN 290 + + W+P +++ ++ +V G G +IV + L Sbjct 440 Y----WSPRPGLWIPIIKSSV-KSYDDLVYSGVVGCK--------------SIVKETALI 480 Query 291 EEIAIILASFSASTSAFVET-VKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSI 349 A+ L + + G++ +Q++ + G++ + NI Sbjct 481 -THALYLDYVQCKCGNLEQNHILGVNNSWCRQLLLNRGDYNMLLK-------NIDLFVKR 532 Query 350 LSPL-YAFASEAARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTS 408 + FA V + + + + ++ I +SQ+S + D + Sbjct 533 RADFACKFAVCGDGFVPFLLDGLIPRSYYLI----QSGIFFTSLMSQFSQEVSDMCLKMC 588 Query 409 DLATNNLVVMAYITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEI 468 L + + V + V + T+ K+ + + + +L Sbjct 589 ILFMDRVSVATFYIEHYVNRLVTQFKLLGTTLVNKMVNWFNTMLDASAPATGWL------ 642 Query 469 VKFISTCACEIVGGQIVTCA---KEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNL 525 + + + A K V F+ L ++ LK +N Sbjct 643 LYQLLNGLFVVSQANFNFVALIPDYAKILVNKFYTFFKLLLECVTVDVLKDMPVLKTING 702 Query 526 -----GETFVTHSKGLYRKCVKSREETGLLMPLKAP-KEIIFLEGETLPTEVLTEEVVLK 579 G F S GL G ++P A ++I F EG V + + Sbjct 703 LVCIVGNKFYNVSTGLIP---------GFVLPCNAQEQQIYFFEGVAESVIVEDDVIENV 753 Query 580 TGDLQPLE 587 L E Sbjct 754 KSSLSSYE 761
>sp|P0C6U3|R1A_CVHN1 Replicase polyprotein 1a OS=Human coronavirus
HKU1 (isolate N1) OX=443239 GN=1a PE=1 SV=1 Length=4471 Score = 62.5 bits (150), Expect = 1e-08, Method: Composition-based stats. Identities = 99/608 (16%), Positives = 188/608 (31%), Gaps = 99/608 (16%) Query 5 YVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAWYTER 64 +VD C G +C L A + + ++ +AW+ R Sbjct 228 FVDQYGCDYSGKLADC---LQAYGHYSLQDMRQKQSVWLANCDFDIV------VAWHVVR 278 Query 65 -SEKSYELQTPFEIKLAKKF-----DTFNGEC----PNFVFPLNSIIKTIQPRVEKKKLD 114 S LQT I K D +G+ P + ++I+ + P + K Sbjct 279 DSRFVMRLQTIATICGIKYVAQPTEDVVDGDVVIREPVHLLSADAIVLKL-PSLMKVMTH 337 Query 115 GFMGRIRSVYPVASPNECNQMCLSTLMKC--DHCGETSWQTGDFVKATCE-FCGTENLTK 171 I+S+Y V +C + + C D+C W +G+ + C T + Sbjct 338 MDDFSIKSIYNVD-LCDCGFVMQYGYVDCFNDNCDFYGWVSGNMMDGFSCPLCCTVYDSS 396 Query 172 E-GATTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCV 230 E A + G +P+N V+ NS H + G FG C+ Sbjct 397 EVKAQSSGVIPENPVLFT------NSTDTVNHDSFNLY-----------GYSVTPFGSCI 439 Query 231 FSYVGCHNKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLN 290 + + W+P +++ ++ +V G G +IV + L Sbjct 440 Y----WSPRPGLWIPIIKSSV-KSYDDLVYSGVVGCK--------------SIVKETALI 480 Query 291 EEIAIILASFSASTSAFVET-VKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSI 349 A+ L + + G++ +Q++ + G++ + NI Sbjct 481 -THALYLDYVQCKCGNLEQNHILGVNNSWCRQLLLNRGDYNMLLK-------NIDLFVKR 532 Query 350 LSPL-YAFASEAARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTS 408 + FA V + + + + ++ I +SQ+S + D + Sbjct 533 RADFACKFAVCGDGFVPFLLDGLIPRSYYLI----QSGIFFTSLMSQFSQEVSDMCLKMC 588 Query 409 DLATNNLVVMAYITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEI 468 L + + V + V + T+ K+ + + + +L Sbjct 589 ILFMDRVSVATFYIEHYVNRLVTQFKLLGTTLVNKMVNWFNTMLDASAPATGWL------ 642 Query 469 VKFISTCACEIVGGQIVTCA---KEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNL 525 + + + A K V F+ L ++ LK +N Sbjct 643 LYQLLNGLFVVSQANFNFVALIPDYAKILVNKFYTFFKLLLECVTVDVLKDMPVLKTING 702 Query 526 -----GETFVTHSKGLYRKCVKSREETGLLMPLKAP-KEIIFLEGETLPTEVLTEEVVLK 579 G F S GL G ++P A ++I F EG V + + Sbjct 703 LVCIVGNKFYNVSTGLIP---------GFVLPCNAQEQQIYFFEGVAESVIVEDDVIENV 753 Query 580 TGDLQPLE 587 L E Sbjct 754 KSSLSSYE 761
>sp|P0C6U4|R1A_CVHN2 Replicase polyprotein 1a OS=Human coronavirus
HKU1 (isolate N2) OX=443240 GN=1a PE=3 SV=1 Length=4441 Score = 61.3 bits (147), Expect = 3e-08, Method: Composition-based stats. Identities = 97/608 (16%), Positives = 186/608 (31%), Gaps = 99/608 (16%) Query 5 YVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAWYTER 64 +VD C G +C L A + + ++ +AW+ R Sbjct 228 FVDQYGCDYSGKLADC---LQAYGHYSLQDMRQKQSVWLANCDFDIV------VAWHVVR 278 Query 65 -SEKSYELQTPFEIKLAKKF-----DTFNGEC----PNFVFPLNSIIKTIQPRVEKKKLD 114 S LQT I K D +G P + ++I+ + P + K Sbjct 279 DSRFVMRLQTIATICGIKYVAQPTEDVVDGAVVIREPVHLLSADAIVLKL-PSLMKVMTH 337 Query 115 GFMGRIRSVYPVASPNECNQMCLSTLMKC--DHCGETSWQTGDFVKATCE-FCGTENLTK 171 I+S+Y V +C + + C D+C W +G+ + C T + Sbjct 338 MDDFSIKSIYNVD-LCDCGFVMQYGYVDCFNDNCDFYGWVSGNMMDGFSCPLCCTVYDSS 396 Query 172 E-GATTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCV 230 E A + G +P+N V+ N + + G FG C+ Sbjct 397 EVKAQSSGVIPENPVLFTNSTDTVNPDSFNLY-----------------GYSVTPFGSCI 439 Query 231 FSYVGCHNKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLN 290 + + W+P +++ ++ +V G G +IV + L Sbjct 440 Y----WSPRPGLWIPIIKSSV-KSYDDLVYSGVVGCK--------------SIVKETALI 480 Query 291 EEIAIILASFSASTSAFVET-VKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSI 349 A+ L + + G++ +Q++ + G++ + NI Sbjct 481 -THALYLDYVQCKCGNLEQNHILGVNNSWCRQLLLNRGDYNMLLK-------NIDLFVKR 532 Query 350 LSPL-YAFASEAARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTS 408 + FA V + + + + ++ I +SQ+S + D + Sbjct 533 RADFACKFAVCGDGFVPFLLDGLIPRSYYLI----QSGIFFTSLMSQFSQEVSDMCLKMC 588 Query 409 DLATNNLVVMAYITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEI 468 L + + V + V + T+ K+ + + + +L Sbjct 589 ILFMDRVSVATFYIEHYVNRLVTQFKLLGTTLVNKMVNWFNTMLDASAPATGWL------ 642 Query 469 VKFISTCACEIVGGQIVTCA---KEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNL 525 + + + A K V F+ L ++ LK +N Sbjct 643 LYQLLNGLFVVSQANFNFVALIPDYAKILVNKFYTFFKLLLECVTVDVLKDMPVLKTING 702 Query 526 -----GETFVTHSKGLYRKCVKSREETGLLMPLKAP-KEIIFLEGETLPTEVLTEEVVLK 579 G F S GL G ++P A ++I F EG V + + Sbjct 703 LVCIVGNKFYNVSTGLIP---------GFVLPCNAQEQQIYFFEGVAESVIVEDDVIENV 753 Query 580 TGDLQPLE 587 L E Sbjct 754 KSSLSSYE 761
>sp|P0C6X3|R1AB_CVHN2 Replicase polyprotein 1ab OS=Human coronavirus
HKU1 (isolate N2) OX=443240 GN=rep PE=3 SV=1 Length=7152 Score = 61.3 bits (147), Expect = 3e-08, Method: Composition-based stats. Identities = 97/608 (16%), Positives = 186/608 (31%), Gaps = 99/608 (16%) Query 5 YVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAWYTER 64 +VD C G +C L A + + ++ +AW+ R Sbjct 228 FVDQYGCDYSGKLADC---LQAYGHYSLQDMRQKQSVWLANCDFDIV------VAWHVVR 278 Query 65 -SEKSYELQTPFEIKLAKKF-----DTFNGEC----PNFVFPLNSIIKTIQPRVEKKKLD 114 S LQT I K D +G P + ++I+ + P + K Sbjct 279 DSRFVMRLQTIATICGIKYVAQPTEDVVDGAVVIREPVHLLSADAIVLKL-PSLMKVMTH 337 Query 115 GFMGRIRSVYPVASPNECNQMCLSTLMKC--DHCGETSWQTGDFVKATCE-FCGTENLTK 171 I+S+Y V +C + + C D+C W +G+ + C T + Sbjct 338 MDDFSIKSIYNVD-LCDCGFVMQYGYVDCFNDNCDFYGWVSGNMMDGFSCPLCCTVYDSS 396 Query 172 E-GATTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCV 230 E A + G +P+N V+ N + + G FG C+ Sbjct 397 EVKAQSSGVIPENPVLFTNSTDTVNPDSFNLY-----------------GYSVTPFGSCI 439 Query 231 FSYVGCHNKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLN 290 + + W+P +++ ++ +V G G +IV + L Sbjct 440 Y----WSPRPGLWIPIIKSSV-KSYDDLVYSGVVGCK--------------SIVKETALI 480 Query 291 EEIAIILASFSASTSAFVET-VKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSI 349 A+ L + + G++ +Q++ + G++ + NI Sbjct 481 -THALYLDYVQCKCGNLEQNHILGVNNSWCRQLLLNRGDYNMLLK-------NIDLFVKR 532 Query 350 LSPL-YAFASEAARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTS 408 + FA V + + + + ++ I +SQ+S + D + Sbjct 533 RADFACKFAVCGDGFVPFLLDGLIPRSYYLI----QSGIFFTSLMSQFSQEVSDMCLKMC 588 Query 409 DLATNNLVVMAYITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEI 468 L + + V + V + T+ K+ + + + +L Sbjct 589 ILFMDRVSVATFYIEHYVNRLVTQFKLLGTTLVNKMVNWFNTMLDASAPATGWL------ 642 Query 469 VKFISTCACEIVGGQIVTCA---KEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNL 525 + + + A K V F+ L ++ LK +N Sbjct 643 LYQLLNGLFVVSQANFNFVALIPDYAKILVNKFYTFFKLLLECVTVDVLKDMPVLKTING 702 Query 526 -----GETFVTHSKGLYRKCVKSREETGLLMPLKAP-KEIIFLEGETLPTEVLTEEVVLK 579 G F S GL G ++P A ++I F EG V + + Sbjct 703 LVCIVGNKFYNVSTGLIP---------GFVLPCNAQEQQIYFFEGVAESVIVEDDVIENV 753 Query 580 TGDLQPLE 587 L E Sbjct 754 KSSLSSYE 761
>sp|Q98VG9|R1AB_FIPV Replicase polyprotein 1ab OS=Feline coronavirus
(strain FIPV WSU-79/1146) OX=33734 GN=rep PE=1 SV=2 Length=6709 Score = 60.2 bits (144), Expect = 6e-08, Method: Composition-based stats. Identities = 51/240 (21%), Positives = 70/240 (29%), Gaps = 43/240 (18%) Query 5 YVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAWYTER 64 YVD CG DG P+ E D+ V E+ AW T R Sbjct 113 YVDQYMCGADGKPV---------------IEGEFKDYF-GDEDVIIYEGEEYHCAWLTVR 156 Query 65 SEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRIRSVY 124 EK QT I+ + + P N I+ + P V+K R +Y Sbjct 157 DEKPLWQQTLLTIREIQYNLDIPHKLP------NCAIREVAPPVKKNSKVVLSEEYRKLY 210 Query 125 PVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKAT-CEFCGTENLTKEGATTCGYLPQN 183 + S M T + + F+ AT CG E+ T Sbjct 211 ---------DIFGSPFMGNGDSLNTCFDSLHFIAATLKCPCGAESSGVGDWTG------- 254 Query 184 AVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKCAYW 243 K C H G +L + T + G F V Y G + W Sbjct 255 --FKTACCGLHGKVKGV--TLGAVKPGDAIVTSMSAGKGVKFFANSVLQYAGDVENVSVW 310 Score = 43.6 bits (101), Expect = 0.007, Method: Composition-based stats. Identities = 43/238 (18%), Positives = 83/238 (35%), Gaps = 24/238 (10%) Query 402 DAMMFTSDLATNNLVVMAYITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEF 461 D ++ + NL A ++ W G ++ V++ L K + Sbjct 362 DCIIAGKLDLSTNLFGSA----NLLFKKMPWFVQKCGAIFADAWKVVEELLCSLKLTYKQ 417 Query 462 LRDGWEIVKFISTCACEIVGGQ--IVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAK 519 + D +V + T A I+ + V + +K+ V K++ K + +I I G + Sbjct 418 IYD---VVASLCTSAFTIMDYKPVFVVSSNSVKDLVDKCVKILVKAFDVFTQTITIAGVE 474 Query 520 LKALNLGETFVTHSKGLYRKCVKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLK 579 K LG ++ + L L+ K L+ T ++ V + Sbjct 475 AKCFVLGSKYLLFNNAL----------VKLVSVKILGKRQKGLDSAFFATNLIGATVNVT 524 Query 580 TGDLQPLEQPTSEA--VEAPLVGTPVCINGLMLLEIKDTEKYCAL-APNMMVTNNTFT 634 + ++ V P G V I + K E Y + +P+ ++ NN F Sbjct 525 PQRTESAYISLNKVDDVVTPGGGHIVIIGDMAFY--KSEEYYFMMASPDSVLVNNVFK 580
>sp|P0C6X4|R1AB_CVHN5 Replicase polyprotein 1ab OS=Human coronavirus
HKU1 (isolate N5) OX=443241 GN=rep PE=3 SV=1 Length=7132 Score = 59.4 bits (142), Expect = 1e-07, Method: Composition-based stats. Identities = 97/608 (16%), Positives = 188/608 (31%), Gaps = 99/608 (16%) Query 5 YVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAWYTER 64 +VD C G +C L A + + ++ +AW+ R Sbjct 228 FVDQYGCDYSGKLADC---LQAYGHYSLQDMRQKQSVWLANCDFDIV------VAWHVVR 278 Query 65 -SEKSYELQTPFEIKLAKKF-----DTFNGEC----PNFVFPLNSIIKTIQPRVEKKKLD 114 S LQT I K D +G+ P + ++I+ + P + K Sbjct 279 DSRFVMRLQTIATICGIKYVAQPTEDVVDGDVVIREPVHLLSADAIVLKL-PSLMKVMTH 337 Query 115 GFMGRIRSVYPVASPNECNQMCLSTLMKC--DHCGETSWQTGDFVKATCE-FCGTENLTK 171 I+S+Y V +C + + C D+C W +G+ + C T + Sbjct 338 MDDFSIKSIYNVD-LCDCGFVMQYGYVDCFNDNCDFYGWVSGNMMDGFSCPLCCTVYDSS 396 Query 172 E-GATTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCV 230 E A + G +P+N V+ N + + G FG C+ Sbjct 397 EVKAQSSGVIPENPVLFTNSTDTVNPDSFNLY-----------------GYSVTPFGSCI 439 Query 231 FSYVGCHNKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLN 290 + + W+P +++ ++ +V G G +IV + L Sbjct 440 Y----WSPRPGLWIPIIKSSV-KSYDDLVYSGVVGCK--------------SIVKETALI 480 Query 291 EEIAIILASFSASTSAFVET-VKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSI 349 A+ L + + G++ +Q++ + G++ + NI Sbjct 481 -THALYLDYVQCKCGNLEQNHILGVNNSWCRQLLLNRGDYNMLLK-------NIDLFVKR 532 Query 350 LSPL-YAFASEAARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTS 408 + FA V + + + + ++ I +SQ+S + D + Sbjct 533 RADFACKFAVCGDGFVPFLLDGLIPRSYYLI----QSGIFFTSLMSQFSQEVSDMCLKMC 588 Query 409 DLATNNLVVMAYITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEI 468 L + + V + V + T+ K+ + + + +L Sbjct 589 ILFMDRVSVATFYIEHYVNRLVTQFKLLGTTLVNKMVNWFNTMLDASAPATGWL------ 642 Query 469 VKFISTCACEIVGGQIVTCA---KEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNL 525 + + + + A K V F+ L ++ LK +N Sbjct 643 LYQLLNGFFVVSQANLNFVALIPDYAKILVNKFYTFFKLLLECVTVDVLKDMPVLKTING 702 Query 526 -----GETFVTHSKGLYRKCVKSREETGLLMPLKAP-KEIIFLEGETLPTEVLTEEVVLK 579 G F S GL G ++P A ++I F EG V + + Sbjct 703 LVCIVGNKFYNVSTGLIP---------GFVLPCNAQEQQIYFFEGVAESVIVEDDVIENV 753 Query 580 TGDLQPLE 587 L E Sbjct 754 KSSLSSYE 761
>sp|P0C6U5|R1A_CVHN5 Replicase polyprotein 1a OS=Human coronavirus
HKU1 (isolate N5) OX=443241 GN=1a PE=3 SV=1 Length=4421 Score = 59.4 bits (142), Expect = 1e-07, Method: Composition-based stats. Identities = 97/608 (16%), Positives = 188/608 (31%), Gaps = 99/608 (16%) Query 5 YVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAWYTER 64 +VD C G +C L A + + ++ +AW+ R Sbjct 228 FVDQYGCDYSGKLADC---LQAYGHYSLQDMRQKQSVWLANCDFDIV------VAWHVVR 278 Query 65 -SEKSYELQTPFEIKLAKKF-----DTFNGEC----PNFVFPLNSIIKTIQPRVEKKKLD 114 S LQT I K D +G+ P + ++I+ + P + K Sbjct 279 DSRFVMRLQTIATICGIKYVAQPTEDVVDGDVVIREPVHLLSADAIVLKL-PSLMKVMTH 337 Query 115 GFMGRIRSVYPVASPNECNQMCLSTLMKC--DHCGETSWQTGDFVKATCE-FCGTENLTK 171 I+S+Y V +C + + C D+C W +G+ + C T + Sbjct 338 MDDFSIKSIYNVD-LCDCGFVMQYGYVDCFNDNCDFYGWVSGNMMDGFSCPLCCTVYDSS 396 Query 172 E-GATTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCV 230 E A + G +P+N V+ N + + G FG C+ Sbjct 397 EVKAQSSGVIPENPVLFTNSTDTVNPDSFNLY-----------------GYSVTPFGSCI 439 Query 231 FSYVGCHNKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLN 290 + + W+P +++ ++ +V G G +IV + L Sbjct 440 Y----WSPRPGLWIPIIKSSV-KSYDDLVYSGVVGCK--------------SIVKETALI 480 Query 291 EEIAIILASFSASTSAFVET-VKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSI 349 A+ L + + G++ +Q++ + G++ + NI Sbjct 481 -THALYLDYVQCKCGNLEQNHILGVNNSWCRQLLLNRGDYNMLLK-------NIDLFVKR 532 Query 350 LSPL-YAFASEAARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTS 408 + FA V + + + + ++ I +SQ+S + D + Sbjct 533 RADFACKFAVCGDGFVPFLLDGLIPRSYYLI----QSGIFFTSLMSQFSQEVSDMCLKMC 588 Query 409 DLATNNLVVMAYITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEI 468 L + + V + V + T+ K+ + + + +L Sbjct 589 ILFMDRVSVATFYIEHYVNRLVTQFKLLGTTLVNKMVNWFNTMLDASAPATGWL------ 642 Query 469 VKFISTCACEIVGGQIVTCA---KEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNL 525 + + + + A K V F+ L ++ LK +N Sbjct 643 LYQLLNGFFVVSQANLNFVALIPDYAKILVNKFYTFFKLLLECVTVDVLKDMPVLKTING 702 Query 526 -----GETFVTHSKGLYRKCVKSREETGLLMPLKAP-KEIIFLEGETLPTEVLTEEVVLK 579 G F S GL G ++P A ++I F EG V + + Sbjct 703 LVCIVGNKFYNVSTGLIP---------GFVLPCNAQEQQIYFFEGVAESVIVEDDVIENV 753 Query 580 TGDLQPLE 587 L E Sbjct 754 KSSLSSYE 761
>sp|P0C6X5|R1AB_CVHNL Replicase polyprotein 1ab OS=Human coronavirus
NL63 OX=277944 GN=rep PE=1 SV=1 Length=6729 Score = 57.9 bits (138), Expect = 3e-07, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 55/173 (32%), Gaps = 30/173 (17%) Query 5 YVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAWYTER 64 +VD CG DG P+ + E D+ + +++AW R Sbjct 114 FVDKYMCGFDGKPV------------LPKNMWEFRDYFNNNTDSIVIGGVTYQLAWDVIR 161 Query 65 SEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRIRSVY 124 + SYE Q I+ T + +P K+ G +VY Sbjct 162 KDLSYEQQNVLAIESIHYLGTTG-----HTLKSGCKLTNAKPPKYSSKV-VLSGEWNAVY 215 Query 125 -PVASPNECNQM----------CLSTLMKCDHCGETSWQTGDFVKATCEFCGT 166 SP N M + +KC+ CG SW G + CGT Sbjct 216 RAFGSPFITNGMSLLDIIVKPVFFNAFVKCN-CGSESWSVGAWDGYLSSCCGT 267
>sp|P0C6U6|R1A_CVHNL Replicase polyprotein 1a OS=Human coronavirus
NL63 OX=277944 GN=1a PE=1 SV=1 Length=4060 Score = 57.9 bits (138), Expect = 3e-07, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 55/173 (32%), Gaps = 30/173 (17%) Query 5 YVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAWYTER 64 +VD CG DG P+ + E D+ + +++AW R Sbjct 114 FVDKYMCGFDGKPV------------LPKNMWEFRDYFNNNTDSIVIGGVTYQLAWDVIR 161 Query 65 SEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRIRSVY 124 + SYE Q I+ T + +P K+ G +VY Sbjct 162 KDLSYEQQNVLAIESIHYLGTTG-----HTLKSGCKLTNAKPPKYSSKV-VLSGEWNAVY 215 Query 125 -PVASPNECNQM----------CLSTLMKCDHCGETSWQTGDFVKATCEFCGT 166 SP N M + +KC+ CG SW G + CGT Sbjct 216 RAFGSPFITNGMSLLDIIVKPVFFNAFVKCN-CGSESWSVGAWDGYLSSCCGT 267
>sp|P0C6X9|R1AB_CVMA5 Replicase polyprotein 1ab OS=Murine coronavirus
(strain A59) OX=11142 GN=rep PE=1 SV=1 Length=7176 Score = 56.7 bits (135), Expect = 6e-07, Method: Composition-based stats. Identities = 83/535 (16%), Positives = 161/535 (30%), Gaps = 96/535 (18%) Query 5 YVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAWYTER 64 +VD C G C+ L G TLSE + R + E +AW+ +R Sbjct 253 FVDQYGCDYTG----CLAKGLEDYGDL--TLSEMKELFPVWRDSL---DSEVLVAWHVDR 303 Query 65 SEKSYELQTPFEIKLAKKFDTFNGEC-------------PNFVFPLNSIIKTIQPRVEKK 111 ++ + + + G+ P + N+I+K + PR+ + Sbjct 304 DPRAAMR---LQTLATVRCIDYVGQPTEDVVDGDVVVREPAHLLAANAIVKRL-PRLVET 359 Query 112 KLDGFMGRIRSVYPVASPNECNQMCLSTLMKC--DHCGETSWQTGDFVKATCE-FCGTEN 168 L Y EC + + C D C W G+ + C Sbjct 360 MLYTDSSVTEFCY-KTKLCECGFITQFGYVDCCGDTCDFRGWVAGNMMDGFPCPGCTKNY 418 Query 169 LTKE-GATTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFG 227 + E A + G +P+ V+ +++ S Y G + FG Sbjct 419 MPWELEAQSSGVIPEGGVL-----FTQSTDTVNRESFKLY------------GHAVVPFG 461 Query 228 GCVFSYVGCHNKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNI--NIVG 285 V+ + C W+P +++ +++G+ G G +++ ++ + V Sbjct 462 SAVY-WSPCPG---MWLPVIWSSV-KSYSGLTYTGVVGC-KAIVQETDAICRSLYMDYVQ 515 Query 286 DFKLNEEIAIILASFSASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGE 345 N E IL GLD +Q++ V +G N+ Sbjct 516 HKCGNLEQRAIL---------------GLDDVYHRQLL-------VNRGDYSLLLENVDL 553 Query 346 QKSILSPLYAFASEAARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQ----YSLRLI 401 +E A + + + + I + +S + Sbjct 554 -------FVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSMMVNFSHEVT 606 Query 402 DAMMFTSDLATNNLVVMAYITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEF 461 D M + L +++ V V + + V K+ D + + Sbjct 607 DMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVRKITEWFDLAVDIAASAAGW 666 Query 462 LRDGWEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIG 516 L + + G I + + E V+ F F + DS+ + Sbjct 667 L------CYQLVNGLFAVANGVITFVQE-VPELVKNFVDKFKAFFKVLIDSMSVS 714
>sp|P0C6V0|R1A_CVMA5 Replicase polyprotein 1a OS=Murine coronavirus
(strain A59) OX=11142 GN=1a PE=1 SV=1 Length=4468 Score = 56.3 bits (134), Expect = 9e-07, Method: Composition-based stats. Identities = 83/535 (16%), Positives = 161/535 (30%), Gaps = 96/535 (18%) Query 5 YVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAWYTER 64 +VD C G C+ L G TLSE + R + E +AW+ +R Sbjct 253 FVDQYGCDYTG----CLAKGLEDYGDL--TLSEMKELFPVWRDSL---DSEVLVAWHVDR 303 Query 65 SEKSYELQTPFEIKLAKKFDTFNGEC-------------PNFVFPLNSIIKTIQPRVEKK 111 ++ + + + G+ P + N+I+K + PR+ + Sbjct 304 DPRAAMR---LQTLATVRCIDYVGQPTEDVVDGDVVVREPAHLLAANAIVKRL-PRLVET 359 Query 112 KLDGFMGRIRSVYPVASPNECNQMCLSTLMKC--DHCGETSWQTGDFVKATCE-FCGTEN 168 L Y EC + + C D C W G+ + C Sbjct 360 MLYTDSSVTEFCY-KTKLCECGFITQFGYVDCCGDTCDFRGWVAGNMMDGFPCPGCTKNY 418 Query 169 LTKE-GATTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFG 227 + E A + G +P+ V+ +++ S Y G + FG Sbjct 419 MPWELEAQSSGVIPEGGVL-----FTQSTDTVNRESFKLY------------GHAVVPFG 461 Query 228 GCVFSYVGCHNKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNI--NIVG 285 V+ + C W+P +++ +++G+ G G +++ ++ + V Sbjct 462 SAVY-WSPCPG---MWLPVIWSSV-KSYSGLTYTGVVGC-KAIVQETDAICRSLYMDYVQ 515 Query 286 DFKLNEEIAIILASFSASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGE 345 N E IL GLD +Q++ V +G N+ Sbjct 516 HKCGNLEQRAIL---------------GLDDVYHRQLL-------VNRGDYSLLLENVDL 553 Query 346 QKSILSPLYAFASEAARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQ----YSLRLI 401 +E A + + + + I + +S + Sbjct 554 -------FVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSMMVNFSHEVT 606 Query 402 DAMMFTSDLATNNLVVMAYITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEF 461 D M + L +++ V V + + V K+ D + + Sbjct 607 DMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVRKITEWFDLAVDIAASAAGW 666 Query 462 LRDGWEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIG 516 L + + G I + + E V+ F F + DS+ + Sbjct 667 L------CYQLVNGLFAVANGVITFVQE-VPELVKNFVDKFKAFFKVLIDSMSVS 714
>sp|P0C6X1|R1AB_CVH22 Replicase polyprotein 1ab OS=Human coronavirus
229E OX=11137 GN=rep PE=1 SV=1 Length=6758 Score = 48.6 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 75/498 (15%), Positives = 143/498 (29%), Gaps = 91/498 (18%) Query 5 YVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAWYTER 64 Y D CG DG P+ S L + +D + H + AW T+R Sbjct 115 YTDQYLCGADGKPV------------MSEDLWQFVDHFGENEEIII-NGHTYVCAWLTKR 161 Query 65 SEKSYELQTPFEIKLA--KKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRIRS 122 Y+ Q I+ D + V + +KT V LD ++ Sbjct 162 KPLDYKRQNNLAIEEIEYVHGDALHTLRNGSVLEMAKEVKTSSKVVLSDALD----KLYK 217 Query 123 VYPVASPNECNQM--------CLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGA 174 V+ + + +S L++C CG SW GD+ Sbjct 218 VFGSPVMTNGSNILEAFTKPVFISALVQCT-CGTKSWSVGDWTG--------------FK 262 Query 175 TTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYV 234 ++C + N + + V P ++ T + G F G +V Sbjct 263 SSCCNVISNKLCVVP------GNVKPGDAVI---------TTQQAGAGIKYFCGMTLKFV 307 Query 235 GCHNKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIA 294 + W I S + + + + N+ + +E Sbjct 308 ANIEGVSVW-----RVIALQSVDCFVASSTFVEEEHVNRMDTFCFNVR----NSVTDECR 358 Query 295 IILASFSASTSAFVETVKGLD------YKAFKQIVESCGNFKVTKGKAKKG-AWNIGEQK 347 + + +++ + G+ + + I + V K + G W+ Sbjct 359 LAMLGAEMTSNVRRQVASGVIDISTGWFDVYDDIFAESKPWFVRKAEDIFGPCWS--ALA 416 Query 348 SILSPLYAFASEAARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSL---RLIDAM 404 S L L E R V+SI + + ++++L L+ + + D Sbjct 417 SALKQLKVTTGELVRFVKSICNSAVAVVGGTIQILASVPEKFLNAFDVFVTAIQTVFDCA 476 Query 405 -------------MFTSDLATNNLVVMAYITGGVVQLTSQWLTNIFGTVYEKLKPVLDWL 451 +F L N LV + V+ V + V Sbjct 477 VETCTIAGKAFDKVFDYVLLDNALVKLVTTKLKGVRERGLNKVKYATVVVGSTEEVKSSR 536 Query 452 EEKFKEGVEFLRDGWEIV 469 E+ + + ++ Sbjct 537 VERSTAVLTIANNYSKLF 554
>sp|P0C6U2|R1A_CVH22 Replicase polyprotein 1a OS=Human coronavirus
229E OX=11137 GN=1a PE=1 SV=1 Length=4085 Score = 48.6 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 75/498 (15%), Positives = 143/498 (29%), Gaps = 91/498 (18%) Query 5 YVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAWYTER 64 Y D CG DG P+ S L + +D + H + AW T+R Sbjct 115 YTDQYLCGADGKPV------------MSEDLWQFVDHFGENEEIII-NGHTYVCAWLTKR 161 Query 65 SEKSYELQTPFEIKLA--KKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRIRS 122 Y+ Q I+ D + V + +KT V LD ++ Sbjct 162 KPLDYKRQNNLAIEEIEYVHGDALHTLRNGSVLEMAKEVKTSSKVVLSDALD----KLYK 217 Query 123 VYPVASPNECNQM--------CLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGA 174 V+ + + +S L++C CG SW GD+ Sbjct 218 VFGSPVMTNGSNILEAFTKPVFISALVQCT-CGTKSWSVGDWTG--------------FK 262 Query 175 TTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYV 234 ++C + N + + V P ++ T + G F G +V Sbjct 263 SSCCNVISNKLCVVP------GNVKPGDAVI---------TTQQAGAGIKYFCGMTLKFV 307 Query 235 GCHNKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIA 294 + W I S + + + + N+ + +E Sbjct 308 ANIEGVSVW-----RVIALQSVDCFVASSTFVEEEHVNRMDTFCFNVR----NSVTDECR 358 Query 295 IILASFSASTSAFVETVKGLD------YKAFKQIVESCGNFKVTKGKAKKG-AWNIGEQK 347 + + +++ + G+ + + I + V K + G W+ Sbjct 359 LAMLGAEMTSNVRRQVASGVIDISTGWFDVYDDIFAESKPWFVRKAEDIFGPCWS--ALA 416 Query 348 SILSPLYAFASEAARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSL---RLIDAM 404 S L L E R V+SI + + ++++L L+ + + D Sbjct 417 SALKQLKVTTGELVRFVKSICNSAVAVVGGTIQILASVPEKFLNAFDVFVTAIQTVFDCA 476 Query 405 -------------MFTSDLATNNLVVMAYITGGVVQLTSQWLTNIFGTVYEKLKPVLDWL 451 +F L N LV + V+ V + V Sbjct 477 VETCTIAGKAFDKVFDYVLLDNALVKLVTTKLKGVRERGLNKVKYATVVVGSTEEVKSSR 536 Query 452 EEKFKEGVEFLRDGWEIV 469 E+ + + ++ Sbjct 537 VERSTAVLTIANNYSKLF 554
>sp|P0C6W0|R1AB_BC512 Replicase polyprotein 1ab OS=Bat coronavirus
512/2005 OX=693999 GN=rep PE=3 SV=1 Length=6793 Score = 42.4 bits (98), Expect = 0.014, Method: Composition-based stats. Identities = 32/169 (19%), Positives = 53/169 (31%), Gaps = 30/169 (18%) Query 6 VDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAWYTERS 65 VD CG DG P + + G + +D+ + + AW +R Sbjct 115 VDQFMCGADGAP-------VIQEGDWTF-----MDYFQ-DSNQFTLNGITYVKAWDVDRK 161 Query 66 EKSYELQTPFEIKLA--------KKFDTFNGECPNFVFPLNSIIKTIQP--RVEKKKLDG 115 Y Q I+ D + +N + P ++ K+ Sbjct 162 PNDYAKQNVTCIRRITYITDHRHVLADGTTMKTARHP-KVNKSVVLDSPFDQIYKEVGSP 220 Query 116 FMGRIRSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFC 164 FMG + V + L+ C+ CG + W GD+ K C Sbjct 221 FMGNGSTF--VEMLKDPAFFH--ALITCE-CGRSEWTVGDW-KGYNSLC 263
>sp|P0C6F6|R1A_BC512 Replicase polyprotein 1a OS=Bat coronavirus
512/2005 OX=693999 GN=1a PE=3 SV=1 Length=4128 Score = 42.4 bits (98), Expect = 0.015, Method: Composition-based stats. Identities = 32/169 (19%), Positives = 53/169 (31%), Gaps = 30/169 (18%) Query 6 VDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAWYTERS 65 VD CG DG P + + G + +D+ + + AW +R Sbjct 115 VDQFMCGADGAP-------VIQEGDWTF-----MDYFQ-DSNQFTLNGITYVKAWDVDRK 161 Query 66 EKSYELQTPFEIKLA--------KKFDTFNGECPNFVFPLNSIIKTIQP--RVEKKKLDG 115 Y Q I+ D + +N + P ++ K+ Sbjct 162 PNDYAKQNVTCIRRITYITDHRHVLADGTTMKTARHP-KVNKSVVLDSPFDQIYKEVGSP 220 Query 116 FMGRIRSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFC 164 FMG + V + L+ C+ CG + W GD+ K C Sbjct 221 FMGNGSTF--VEMLKDPAFFH--ALITCE-CGRSEWTVGDW-KGYNSLC 263
>sp|Q3C251|ARGJ_CITLA Arginine biosynthesis bifunctional protein
ArgJ, chloroplastic OS=Citrullus lanatus OX=3654 PE=1 SV=1 Length=460 Score = 40.9 bits (94), Expect = 0.032, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 67/160 (42%), Gaps = 20/160 (13%) Query 218 RKGGRTIAFGGCVFSYVGCHNKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLEI-LQK 276 + GG TI GG + + + P + +G T V + +++I + + Sbjct 215 QVGGSTIRIGG-----MAKGSGMIH--PNMATMLGVVTTDAVVACD--VWRKMVQISVDR 265 Query 277 EKVNINIVGDFKLNEEIAIILASFSASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKA 336 I + GD N+ + + + S S + ++K + ++ ++ V +G A Sbjct 266 SFNQITVDGDTSTNDTVIALSSGLSGFNSNIISSLKSREAGQLQECLD-----VVMQGLA 320 Query 337 KKGAWNIGEQKS----ILSPLYAFASEAARVVRSIFSRTL 372 K AW+ GE + I + +EAA+V RS+ +L Sbjct 321 KSIAWD-GEGATCLIEITVSGASTEAEAAKVARSVAGSSL 359
>sp|Q9KIP9|AGAS_ECOLX D-galactosamine-6-phosphate deaminase AgaS
OS=Escherichia coli OX=562 GN=agaS PE=1 SV=1 Length=384 Score = 35.1 bits (79), Expect = 2.2, Method: Composition-based stats. Identities = 27/155 (17%), Positives = 56/155 (36%), Gaps = 14/155 (9%) Query 243 WVPRASAN-IGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASFS 301 +VP I CN G + + + ++ ++ E + + +A LA F+ Sbjct 129 FVPECYHLPITCNEAGALYQNAINSDNAFALLMPAETHDRGFAMTSSITTMMASCLAVFA 188 Query 302 ASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSIL----SPLYAFA 357 T ++ + F+ + + C T G +G + K I+ L A Sbjct 189 PET---------INSQTFRDVADRCQAILTTLGDFSEGVFGYAPWKRIVYLGSGGLQGAA 239 Query 358 SEAARVVRSIFSRTLETAQNSVRVLQKAAITILDG 392 E+A V + + L +S + +++D Sbjct 240 RESALKVLELTAGKLAAFYDSPTGFRHGPKSLVDD 274
>sp|Q6P6T1|C1S_RAT Complement C1s subcomponent OS=Rattus norvegicus
OX=10116 GN=C1s PE=2 SV=2 Length=688 Score = 34.4 bits (77), Expect = 4.1, Method: Composition-based stats. Identities = 20/92 (22%), Positives = 29/92 (32%), Gaps = 16/92 (17%) Query 89 ECPNFVFPLNS-IIKTIQPRVEKKKLDGFMGRIRSVYPVASPNECNQMCLSTLMKCDH-C 146 F FP N + +++ GF + Y NEC T + C H C Sbjct 95 TVEEFQFPYNRLQVVFTSDFSNEERFTGF----AAYYSAVDVNECTDF---TDVPCSHFC 147 Query 147 GETSWQTGDFVKATCEFCGTENLTKEGATTCG 178 +F+ C E + TCG Sbjct 148 N-------NFIGGYFCSCPPEYFLHDDMRTCG 172
>sp|Q9ZUR7|ARGJ_ARATH Arginine biosynthesis bifunctional protein
ArgJ, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At2g37500 PE=1 SV=2 Length=468 Score = 34.4 bits (77), Expect = 4.1, Method: Composition-based stats. Identities = 32/151 (21%), Positives = 60/151 (40%), Gaps = 15/151 (10%) Query 227 GGCVFSYVGCHNKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLEI-LQKEKVNINIVG 285 GG G P + +G T + E + ++++ + + I + G Sbjct 227 GGIKIRVGGMAKGSGMIHPNMATMLGVITTDALVESD--IWRKMVKVAVNRSFNQITVDG 284 Query 286 DFKLNEEIAIILASFSASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGE 345 D N+ + + + S S S K +++C + V +G AK AW+ GE Sbjct 285 DTSTNDTVIALASGLSGSPSISSLNCKEAAQ------LQACLD-AVMQGLAKSIAWD-GE 336 Query 346 QKSILSPLYA----FASEAARVVRSIFSRTL 372 + L + +EAA++ RS+ S +L Sbjct 337 GATCLIEVTVKGTETEAEAAKIARSVASSSL 367
>sp|Q18823|LAM2_CAEEL Laminin-like protein lam-2 OS=Caenorhabditis
elegans OX=6239 GN=lam-2 PE=1 SV=3 Length=1633 Score = 34.4 bits (77), Expect = 4.2, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 25/83 (30%), Gaps = 4/83 (5%) Query 136 CLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYLPQNAVVKIYCPACHN 195 + C+ C + GD ++ T E C +G C V+ CP + Sbjct 756 HNTAGDTCERCARGYY--GDALQGTEEDCQKCPCPNDGP--CILHADGDVICTECPNGYT 811 Query 196 SEVGPEHSLAEYHNESGLKTILR 218 E S + N + Sbjct 812 GRRCDECSDGYFGNPKDGTECVE 834
>sp|Q9Y7Q9|YCX2_SCHPO Probable metabolite transporter C2H8.02
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPCC2H8.02 PE=1 SV=1 Length=583 Score = 34.0 bits (76), Expect = 5.6, Method: Composition-based stats. Identities = 11/88 (13%), Positives = 22/88 (25%), Gaps = 4/88 (5%) Query 149 TSWQTGDFVKATCEFCGTENLTKEGATTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYH 208 +W+T + G T ++ V A + Sbjct 449 GTWETISTGGRFACVALAQFFFNFGPNTTCFVIPAEVFPSRVRAFSHGICAACGKAGAIL 508 Query 209 NESGLKTILRKGGRTIAFGGCVFSYVGC 236 + + G FG ++ + GC Sbjct 509 SALLFNKLTEVIG----FGNVLWIFFGC 532
>sp|P42907|AGAS_ECOLI Putative D-galactosamine-6-phosphate deaminase
AgaS OS=Escherichia coli (strain K12) OX=83333 GN=agaS PE=1 SV=1 Length=384 Score = 33.2 bits (74), Expect = 7.3, Method: Composition-based stats. Identities = 26/155 (17%), Positives = 56/155 (36%), Gaps = 14/155 (9%) Query 243 WVPRASAN-IGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASFS 301 +VP I CN G + + + ++ ++ E + + +A LA F+ Sbjct 129 FVPECYHLPITCNEAGALYQNAINSDNAFALLMPAETHDRGFAMTSSITTMMASCLAVFA 188 Query 302 ASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSIL----SPLYAFA 357 T ++ + F+ + + C + G +G + K I+ L A Sbjct 189 PET---------INSQTFRDVADRCQAILTSLGDFSEGVFGYAPWKRIVYLGSGGLQGAA 239 Query 358 SEAARVVRSIFSRTLETAQNSVRVLQKAAITILDG 392 E+A V + + L +S + +++D Sbjct 240 RESALKVLELTAGKLAAFYDSPTGFRHGPKSLVDD 274
>sp|Q8U221|SYM_PYRFU Methionine--tRNA ligase OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) OX=186497 GN=metG PE=3 SV=1 Length=724 Score = 33.6 bits (75), Expect = 7.9, Method: Composition-based stats. Identities = 15/54 (28%), Positives = 22/54 (41%), Gaps = 2/54 (4%) Query 145 HCGETS-WQTGDFVKATCEFCGTENLTKEGATTCGY-LPQNAVVKIYCPACHNS 196 +C + FV TC +CG EN + CG L +++ C C N Sbjct 126 YCEHDKRFLPDRFVIGTCPYCGAENQRGDQCEVCGRPLTPEILIEPRCAFCKNP 179
>sp|Q1LVF0|LAMC1_DANRE Laminin subunit gamma-1 OS=Danio rerio
OX=7955 GN=lamc1 PE=2 SV=2 Length=1593 Score = 33.2 bits (74), Expect = 9.2, Method: Composition-based stats. Identities = 15/61 (25%), Positives = 23/61 (38%), Gaps = 5/61 (8%) Query 132 CNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYLPQ-NAVVKIYC 190 CN + + C+ C + + GD + C TC +P+ N VV C Sbjct 724 CNCQHNTAGLSCERCKDGFY--GDSTVGSSSDCKA--CPCPAGATCAVVPKTNEVVCTNC 779 Query 191 P 191 P Sbjct 780 P 780 Lambda K H a alpha 0.318 0.126 0.315 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0385 0.140 1.90 42.6 43.6 Effective search space used: 69775623360 Database: uniprot_sprot.fasta Posted date: Feb 9, 2024 7:20 PM Number of letters in database: 206,533,160 Number of sequences in database: 570,830 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40