[Multiple Alignment(many alignments)] [Alignment Bar(many alignments)] [show plain BLAST file]
BLASTP 2.11.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: unitmol_20240306.fasta
           823,561 sequences; 235,957,221 total letters



Query= YP_009725300.1 nsp4 [Severe acute respiratory syndrome coronavirus
2]

Length=500
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

3vcb_B B RNA-directed RNA polymerase                                  109     1e-27
3vcb_A A RNA-directed RNA polymerase                                  109     1e-27
3vc8_B B RNA-directed RNA polymerase                                  105     3e-26
3vc8_A A RNA-directed RNA polymerase                                  101     1e-24
3gzf_A A Replicase polyprotein 1ab                                    65.9    4e-12
3gzf_C C Replicase polyprotein 1ab                                    64.3    1e-11
3gzf_D D Replicase polyprotein 1ab                                    64.3    1e-11
3gzf_B B Replicase polyprotein 1ab                                    61.2    2e-10
3gzf_E E Replicase polyprotein 1ab                                    50.8    7e-07
1t70_E E Phosphatase                                                  40.4    0.028
1t70_D D Phosphatase                                                  40.4    0.028
1t70_C C Phosphatase                                                  40.4    0.028
1t70_B B Phosphatase                                                  40.4    0.028
1t70_A A Phosphatase                                                  40.4    0.028
1t70_G G Phosphatase                                                  40.4    0.028
1t70_F F Phosphatase                                                  40.4    0.028
1t70_H H Phosphatase                                                  40.4    0.028


>3vcb_B B RNA-directed RNA polymerase
Length=94 Score = 109 bits (273), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 54/91 (59%), Positives = 69/91 (76%), Gaps = 3/91 (3%) Query 410 STFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACC 469 STFEE AL TF++ KE Y KL++ V +NRYL+LYNKY+YFSG MDT +YREAAC Sbjct 5 STFEEMALTTFMITKESYSKLKNSV--SDVAFNRYLSLYNKYRYFSGKMDTAAYREAACS 62 Query 470 HLAKALNDFS-NSGSDVLYQPPQTSITSAVL 499 LAKA+ F+ N+G+DVLYQPP S+T++ L Sbjct 63 QLAKAMETFNHNNGNDVLYQPPTASVTTSFL 93
>3vcb_A A RNA-directed RNA polymerase
Length=94 Score = 109 bits (273), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 54/91 (59%), Positives = 69/91 (76%), Gaps = 3/91 (3%) Query 410 STFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACC 469 STFEE AL TF++ KE Y KL++ V +NRYL+LYNKY+YFSG MDT +YREAAC Sbjct 5 STFEEMALTTFMITKESYSKLKNSV--SDVAFNRYLSLYNKYRYFSGKMDTAAYREAACS 62 Query 470 HLAKALNDFS-NSGSDVLYQPPQTSITSAVL 499 LAKA+ F+ N+G+DVLYQPP S+T++ L Sbjct 63 QLAKAMETFNHNNGNDVLYQPPTASVTTSFL 93
>3vc8_B B RNA-directed RNA polymerase
Length=94 Score = 105 bits (263), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 52/87 (60%), Positives = 66/87 (76%), Gaps = 3/87 (3%) Query 411 TFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCH 470 TFEE AL TF++ KE Y KL++ V +NRYL+LYNKY+YFSG MDT +YREAAC Sbjct 6 TFEEMALTTFMITKESYCKLKNSV--SDVAFNRYLSLYNKYRYFSGKMDTAAYREAACSQ 63 Query 471 LAKALNDFS-NSGSDVLYQPPQTSITS 496 LAKA+ F+ N+G+DVLYQPP S+T+ Sbjct 64 LAKAMETFNHNNGNDVLYQPPTASVTT 90
>3vc8_A A RNA-directed RNA polymerase
Length=94 Score = 101 bits (251), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 50/81 (62%), Positives = 62/81 (77%), Gaps = 3/81 (4%) Query 411 TFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCH 470 TFEE AL TF++ KE Y KL++ V +NRYL+LYNKY+YFSG MDT +YREAAC Sbjct 6 TFEEMALTTFMITKESYCKLKNSV--SDVAFNRYLSLYNKYRYFSGKMDTAAYREAACSQ 63 Query 471 LAKALNDFS-NSGSDVLYQPP 490 LAKA+ F+ N+G+DVLYQPP Sbjct 64 LAKAMETFNHNNGNDVLYQPP 84
>3gzf_A A Replicase polyprotein 1ab
Length=96 Score = 65.9 bits (159), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 38/97 (39%), Positives = 54/97 (56%), Gaps = 3/97 (3%) Query 403 VFNGVSF-STFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTT 461 +F G F +FE AA+ TF+++ Y L + L + Y +NKYKY++G+M Sbjct 2 LFEGDKFVGSFESAAMGTFVIDMRSYETLVNST--SLDRIKSYANSFNKYKYYTGSMGEA 59 Query 462 SYREAACCHLAKALNDFSNSGSDVLYQPPQTSITSAV 498 YR A HL KAL D+S S +D LY PP S+ S + Sbjct 60 DYRMACYAHLGKALMDYSVSRNDKLYTPPTVSVNSTL 96
>3gzf_C C Replicase polyprotein 1ab
Length=96 Score = 64.3 bits (155), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 37/93 (40%), Positives = 52/93 (56%), Gaps = 3/93 (3%) Query 403 VFNGVSF-STFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTT 461 +F G F +FE AA+ TF+++ Y L + L + Y +NKYKY++G+M Sbjct 2 LFEGDKFVGSFESAAMGTFVIDMRSYETLVNST--SLDRIKSYANSFNKYKYYTGSMGEA 59 Query 462 SYREAACCHLAKALNDFSNSGSDVLYQPPQTSI 494 YR A HL KAL D+S S +D LY PP S+ Sbjct 60 DYRMACYAHLGKALMDYSVSRNDKLYTPPTVSV 92
>3gzf_D D Replicase polyprotein 1ab
Length=96 Score = 64.3 bits (155), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 37/93 (40%), Positives = 52/93 (56%), Gaps = 3/93 (3%) Query 403 VFNGVSF-STFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTT 461 +F G F +FE AA+ TF+++ Y L + L + Y +NKYKY++G+M Sbjct 2 LFEGDKFVGSFESAAMGTFVIDMRSYETLVNST--SLDRIKSYANSFNKYKYYTGSMGEA 59 Query 462 SYREAACCHLAKALNDFSNSGSDVLYQPPQTSI 494 YR A HL KAL D+S S +D LY PP S+ Sbjct 60 DYRMACYAHLGKALMDYSVSRNDKLYTPPTVSV 92
>3gzf_B B Replicase polyprotein 1ab
Length=96 Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 37/97 (38%), Positives = 51/97 (53%), Gaps = 3/97 (3%) Query 403 VFNGVSF-STFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTT 461 +F G F +FE AA+ TF+++ Y L + L + Y +NKYK G+M Sbjct 2 LFEGDKFVGSFESAAMGTFVIDMRSYETLVNST--SLDRIKSYANSFNKYKXXXGSMGEA 59 Query 462 SYREAACCHLAKALNDFSNSGSDVLYQPPQTSITSAV 498 YR A HL KAL D+S S +D LY PP S+ S + Sbjct 60 DYRMACYAHLGKALMDYSVSRNDKLYTPPTVSVNSTL 96
>3gzf_E E Replicase polyprotein 1ab
Length=96 Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 44/89 (49%), Gaps = 3/89 (3%) Query 403 VFNGVSF-STFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTT 461 +F G F +FE AA+ TF+++ Y L + L + Y +NKYK Sbjct 2 LFEGDKFVGSFESAAMGTFVIDMRSYETLVNST--SLDRIKSYANSFNKYKXXXXXXGEA 59 Query 462 SYREAACCHLAKALNDFSNSGSDVLYQPP 490 YR A HL KAL D+S S +D LY PP Sbjct 60 DYRMACYAHLGKALMDYSVSRNDKLYTPP 88
>1t70_E E Phosphatase
Length=255 Score = 40.4 bits (93), Expect = 0.028, Method: Compositional matrix adjust. Identities = 54/177 (31%), Positives = 73/177 (41%), Gaps = 31/177 (18%) Query 95 ITREVGFVVPGLPGTILRT--TNGDFL---HFLPRVF-SAVGNICYTPSKLIEYTDFATS 148 I R + + PG PG RT NG+ L + L RVF AV N T L+E D T Sbjct 84 IVRPLNYADPGTPGVGWRTFDVNGEKLTVVNLLGRVFMEAVDNPFRTMDALLERDDLGTV 143 Query 149 ACVLAAECTIFKDASG--------------KPVPYCYDTNVLEGSVAYESLRPDTRYVLM 194 AE T K+A G VP DT +L+G AY++ D + Sbjct 144 FVDFHAEATSEKEAMGWHLAGRVAAVIGTHTHVPTA-DTRILKGGTAYQT---DAGFTGP 199 Query 195 DGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTCE-RSE-AGVCVSTSGRWVLNNDYYR 249 SII + +EG ++ T R+G E R+E GV + G + YR Sbjct 200 HDSII---GSAIEGPLQRFLT--ERPHRYGVAEGRAELNGVALHFEGGKATAAERYR 251
>1t70_D D Phosphatase
Length=255 Score = 40.4 bits (93), Expect = 0.028, Method: Compositional matrix adjust. Identities = 54/177 (31%), Positives = 73/177 (41%), Gaps = 31/177 (18%) Query 95 ITREVGFVVPGLPGTILRT--TNGDFL---HFLPRVF-SAVGNICYTPSKLIEYTDFATS 148 I R + + PG PG RT NG+ L + L RVF AV N T L+E D T Sbjct 84 IVRPLNYADPGTPGVGWRTFDVNGEKLTVVNLLGRVFMEAVDNPFRTMDALLERDDLGTV 143 Query 149 ACVLAAECTIFKDASG--------------KPVPYCYDTNVLEGSVAYESLRPDTRYVLM 194 AE T K+A G VP DT +L+G AY++ D + Sbjct 144 FVDFHAEATSEKEAMGWHLAGRVAAVIGTHTHVPTA-DTRILKGGTAYQT---DAGFTGP 199 Query 195 DGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTCE-RSE-AGVCVSTSGRWVLNNDYYR 249 SII + +EG ++ T R+G E R+E GV + G + YR Sbjct 200 HDSII---GSAIEGPLQRFLT--ERPHRYGVAEGRAELNGVALHFEGGKATAAERYR 251
>1t70_C C Phosphatase
Length=255 Score = 40.4 bits (93), Expect = 0.028, Method: Compositional matrix adjust. Identities = 54/177 (31%), Positives = 73/177 (41%), Gaps = 31/177 (18%) Query 95 ITREVGFVVPGLPGTILRT--TNGDFL---HFLPRVF-SAVGNICYTPSKLIEYTDFATS 148 I R + + PG PG RT NG+ L + L RVF AV N T L+E D T Sbjct 84 IVRPLNYADPGTPGVGWRTFDVNGEKLTVVNLLGRVFMEAVDNPFRTMDALLERDDLGTV 143 Query 149 ACVLAAECTIFKDASG--------------KPVPYCYDTNVLEGSVAYESLRPDTRYVLM 194 AE T K+A G VP DT +L+G AY++ D + Sbjct 144 FVDFHAEATSEKEAMGWHLAGRVAAVIGTHTHVPTA-DTRILKGGTAYQT---DAGFTGP 199 Query 195 DGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTCE-RSE-AGVCVSTSGRWVLNNDYYR 249 SII + +EG ++ T R+G E R+E GV + G + YR Sbjct 200 HDSII---GSAIEGPLQRFLT--ERPHRYGVAEGRAELNGVALHFEGGKATAAERYR 251
>1t70_B B Phosphatase
Length=255 Score = 40.4 bits (93), Expect = 0.028, Method: Compositional matrix adjust. Identities = 54/177 (31%), Positives = 73/177 (41%), Gaps = 31/177 (18%) Query 95 ITREVGFVVPGLPGTILRT--TNGDFL---HFLPRVF-SAVGNICYTPSKLIEYTDFATS 148 I R + + PG PG RT NG+ L + L RVF AV N T L+E D T Sbjct 84 IVRPLNYADPGTPGVGWRTFDVNGEKLTVVNLLGRVFMEAVDNPFRTMDALLERDDLGTV 143 Query 149 ACVLAAECTIFKDASG--------------KPVPYCYDTNVLEGSVAYESLRPDTRYVLM 194 AE T K+A G VP DT +L+G AY++ D + Sbjct 144 FVDFHAEATSEKEAMGWHLAGRVAAVIGTHTHVPTA-DTRILKGGTAYQT---DAGFTGP 199 Query 195 DGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTCE-RSE-AGVCVSTSGRWVLNNDYYR 249 SII + +EG ++ T R+G E R+E GV + G + YR Sbjct 200 HDSII---GSAIEGPLQRFLT--ERPHRYGVAEGRAELNGVALHFEGGKATAAERYR 251
>1t70_A A Phosphatase
Length=255 Score = 40.4 bits (93), Expect = 0.028, Method: Compositional matrix adjust. Identities = 54/177 (31%), Positives = 73/177 (41%), Gaps = 31/177 (18%) Query 95 ITREVGFVVPGLPGTILRT--TNGDFL---HFLPRVF-SAVGNICYTPSKLIEYTDFATS 148 I R + + PG PG RT NG+ L + L RVF AV N T L+E D T Sbjct 84 IVRPLNYADPGTPGVGWRTFDVNGEKLTVVNLLGRVFMEAVDNPFRTMDALLERDDLGTV 143 Query 149 ACVLAAECTIFKDASG--------------KPVPYCYDTNVLEGSVAYESLRPDTRYVLM 194 AE T K+A G VP DT +L+G AY++ D + Sbjct 144 FVDFHAEATSEKEAMGWHLAGRVAAVIGTHTHVPTA-DTRILKGGTAYQT---DAGFTGP 199 Query 195 DGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTCE-RSE-AGVCVSTSGRWVLNNDYYR 249 SII + +EG ++ T R+G E R+E GV + G + YR Sbjct 200 HDSII---GSAIEGPLQRFLT--ERPHRYGVAEGRAELNGVALHFEGGKATAAERYR 251
>1t70_G G Phosphatase
Length=255 Score = 40.4 bits (93), Expect = 0.028, Method: Compositional matrix adjust. Identities = 54/177 (31%), Positives = 73/177 (41%), Gaps = 31/177 (18%) Query 95 ITREVGFVVPGLPGTILRT--TNGDFL---HFLPRVF-SAVGNICYTPSKLIEYTDFATS 148 I R + + PG PG RT NG+ L + L RVF AV N T L+E D T Sbjct 84 IVRPLNYADPGTPGVGWRTFDVNGEKLTVVNLLGRVFMEAVDNPFRTMDALLERDDLGTV 143 Query 149 ACVLAAECTIFKDASG--------------KPVPYCYDTNVLEGSVAYESLRPDTRYVLM 194 AE T K+A G VP DT +L+G AY++ D + Sbjct 144 FVDFHAEATSEKEAMGWHLAGRVAAVIGTHTHVPTA-DTRILKGGTAYQT---DAGFTGP 199 Query 195 DGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTCE-RSE-AGVCVSTSGRWVLNNDYYR 249 SII + +EG ++ T R+G E R+E GV + G + YR Sbjct 200 HDSII---GSAIEGPLQRFLT--ERPHRYGVAEGRAELNGVALHFEGGKATAAERYR 251
>1t70_F F Phosphatase
Length=255 Score = 40.4 bits (93), Expect = 0.028, Method: Compositional matrix adjust. Identities = 54/177 (31%), Positives = 73/177 (41%), Gaps = 31/177 (18%) Query 95 ITREVGFVVPGLPGTILRT--TNGDFL---HFLPRVF-SAVGNICYTPSKLIEYTDFATS 148 I R + + PG PG RT NG+ L + L RVF AV N T L+E D T Sbjct 84 IVRPLNYADPGTPGVGWRTFDVNGEKLTVVNLLGRVFMEAVDNPFRTMDALLERDDLGTV 143 Query 149 ACVLAAECTIFKDASG--------------KPVPYCYDTNVLEGSVAYESLRPDTRYVLM 194 AE T K+A G VP DT +L+G AY++ D + Sbjct 144 FVDFHAEATSEKEAMGWHLAGRVAAVIGTHTHVPTA-DTRILKGGTAYQT---DAGFTGP 199 Query 195 DGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTCE-RSE-AGVCVSTSGRWVLNNDYYR 249 SII + +EG ++ T R+G E R+E GV + G + YR Sbjct 200 HDSII---GSAIEGPLQRFLT--ERPHRYGVAEGRAELNGVALHFEGGKATAAERYR 251
>1t70_H H Phosphatase
Length=255 Score = 40.4 bits (93), Expect = 0.028, Method: Compositional matrix adjust. Identities = 54/177 (31%), Positives = 73/177 (41%), Gaps = 31/177 (18%) Query 95 ITREVGFVVPGLPGTILRT--TNGDFL---HFLPRVF-SAVGNICYTPSKLIEYTDFATS 148 I R + + PG PG RT NG+ L + L RVF AV N T L+E D T Sbjct 84 IVRPLNYADPGTPGVGWRTFDVNGEKLTVVNLLGRVFMEAVDNPFRTMDALLERDDLGTV 143 Query 149 ACVLAAECTIFKDASG--------------KPVPYCYDTNVLEGSVAYESLRPDTRYVLM 194 AE T K+A G VP DT +L+G AY++ D + Sbjct 144 FVDFHAEATSEKEAMGWHLAGRVAAVIGTHTHVPTA-DTRILKGGTAYQT---DAGFTGP 199 Query 195 DGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTCE-RSE-AGVCVSTSGRWVLNNDYYR 249 SII + +EG ++ T R+G E R+E GV + G + YR Sbjct 200 HDSII---GSAIEGPLQRFLT--ERPHRYGVAEGRAELNGVALHFEGGKATAAERYR 251 Lambda K H a alpha 0.327 0.140 0.437 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 51212490462 Database: unitmol_20240306.fasta Posted date: Mar 7, 2024 11:58 AM Number of letters in database: 235,957,221 Number of sequences in database: 823,561 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40