BLASTP 2.11.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: unitmol_20240403.fasta
           829,018 sequences; 237,935,689 total letters



Query= YP_009724395.1 ORF7a protein [Severe acute respiratory syndrome
coronavirus 2]

Length=121
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

1yo4_A A Hypothetical protein X4                                      158     1e-50
7ci3_A A Orf7a protein                                                150     3e-47
6w37_A A ORF7a protein                                                143     4e-45
1xak_A A SARS ORF7A ACCESSORY PROTEIN                                 133     8e-41
4mj7_B B rRNA-processing protein UTP23                                29.3    7.8  


>1yo4_A A Hypothetical protein X4
Length=87

 Score = 158 bits (399),  Expect = 1e-50, Method: Compositional matrix adjust.
 Identities = 76/84 (90%), Positives = 77/84 (92%), Gaps = 1/84 (1%)

Query  16  ELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHPLADNKFALTCFSTQFAFACPDGVKHVY  75
           ELYHYQECVRGTTVLLKEPC SGTYEGNSPFHPLADNKFALTC ST FAFAC DG +H Y
Sbjct  3   ELYHYQECVRGTTVLLKEPCPSGTYEGNSPFHPLADNKFALTCTSTHFAFACADGTRHTY  62

Query  76  QLRARSVSPKLFIRQEEV-QELYS  98
           QLRARSVSPKLFIRQEEV QELYS
Sbjct  63  QLRARSVSPKLFIRQEEVQQELYS  86


>7ci3_A A Orf7a protein
Length=84

 Score = 150 bits (378),  Expect = 3e-47, Method: Compositional matrix adjust.
 Identities = 69/69 (100%), Positives = 69/69 (100%), Gaps = 0/69 (0%)

Query  14  TCELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHPLADNKFALTCFSTQFAFACPDGVKH  73
           TCELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHPLADNKFALTCFSTQFAFACPDGVKH
Sbjct  2   TCELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHPLADNKFALTCFSTQFAFACPDGVKH  61

Query  74  VYQLRARSV  82
           VYQLRARSV
Sbjct  62  VYQLRARSV  70


>6w37_A A ORF7a protein
Length=67

 Score = 143 bits (361),  Expect = 4e-45, Method: Compositional matrix adjust.
 Identities = 66/66 (100%), Positives = 66/66 (100%), Gaps = 0/66 (0%)

Query  16  ELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHPLADNKFALTCFSTQFAFACPDGVKHVY  75
           ELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHPLADNKFALTCFSTQFAFACPDGVKHVY
Sbjct  1   ELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHPLADNKFALTCFSTQFAFACPDGVKHVY  60

Query  76  QLRARS  81
           QLRARS
Sbjct  61  QLRARS  66


>1xak_A A SARS ORF7A ACCESSORY PROTEIN
Length=83

 Score = 133 bits (335),  Expect = 8e-41, Method: Compositional matrix adjust.
 Identities = 60/68 (88%), Positives = 62/68 (91%), Gaps = 0/68 (0%)

Query  15  CELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHPLADNKFALTCFSTQFAFACPDGVKHV  74
           CELYHYQECVRGTTV+LKEPC SGTYEGNSPFHPLADNKFALTC ST FAFAC DG +H 
Sbjct  2   CELYHYQECVRGTTVILKEPCPSGTYEGNSPFHPLADNKFALTCTSTHFAFACADGTRHT  61

Query  75  YQLRARSV  82
           YQLRARSV
Sbjct  62  YQLRARSV  69


>4mj7_B B rRNA-processing protein UTP23
Length=159

 Score = 29.3 bits (64),  Expect = 7.8, Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 28/61 (46%), Gaps = 7/61 (11%)

Query  37  SGTYEGNSPFHPLADNKFALTCFSTQFAFACPDGVKHVYQLRARSVSPKLFIRQEEVQEL  96
           S T++   P+  L DN+  L C ++ F    P G+K   Q        K+ I Q  +Q L
Sbjct  17  SHTFKFREPYQVLVDNQLVLECNNSNFNL--PSGLKRTLQ-----ADVKVMITQCCIQAL  69

Query  97  Y  97
           Y
Sbjct  70  Y  70



Lambda      K        H        a         alpha
   0.329    0.140    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 5832404935


  Database: unitmol_20240403.fasta
    Posted date:  Apr 4, 2024  8:53 PM
  Number of letters in database: 237,935,689
  Number of sequences in database:  829,018



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40