[Multiple Alignment(many alignments)]
[Alignment Bar(many alignments)]
[show plain BLAST file]
BLASTP 2.11.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: unitmol_20240403.fasta
829,018 sequences; 237,935,689 total letters
Query= sp|Q80H93|NS8B_SARS ORF8b protein OS=Severe acute respiratory
syndrome coronavirus OX=694009 GN=8b PE=1 SV=1
Length=84
Score E
Sequences producing significant alignments: (Bits) Value
7f5f_A A ORF8 protein 34.3 0.028
7f8l_B B Nonstructural protein NS8 34.3 0.030
7f8l_A A Nonstructural protein NS8 34.3 0.030
7jtl_A A ORF8 protein 33.5 0.073
7jx6_B B ORF8 protein 33.5 0.074
7xmn_B B ORF8 protein 33.5 0.076
7jx6_A A ORF8 protein 33.1 0.079
7mx9_A A ORF8 protein 33.5 0.082
7jtl_B B ORF8 protein 33.1 0.083
4tvs_B B Torsin-1A-interacting protein 1 28.5 7.9
4tvs_A A Torsin-1A-interacting protein 1 28.5 8.2
>7f5f_A A ORF8 protein
Length=104
Score = 34.3 bits (77), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 4/42 (10%)
Query 39 TCTPNVTINCQDPAGGALIARCWYLHEGHQTAAFRDVLVVLN 80
+C+P TINCQ+P G+L+ RC + + + + DV VVL+
Sbjct 65 SCSP-FTINCQEPKLGSLVVRCSFYEDFLE---YHDVRVVLD 102
>7f8l_B B Nonstructural protein NS8
Length=107
Score = 34.3 bits (77), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 4/42 (10%)
Query 39 TCTPNVTINCQDPAGGALIARCWYLHEGHQTAAFRDVLVVLN 80
+C+P TINCQ+P G+L+ RC + + + + DV VVL+
Sbjct 68 SCSP-FTINCQEPKLGSLVVRCSFYEDFLE---YHDVRVVLD 105
>7f8l_A A Nonstructural protein NS8
Length=107
Score = 34.3 bits (77), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 4/42 (10%)
Query 39 TCTPNVTINCQDPAGGALIARCWYLHEGHQTAAFRDVLVVLN 80
+C+P TINCQ+P G+L+ RC + + + + DV VVL+
Sbjct 68 SCSP-FTINCQEPKLGSLVVRCSFYEDFLE---YHDVRVVLD 105
>7jtl_A A ORF8 protein
Length=107
Score = 33.5 bits (75), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (62%), Gaps = 4/42 (10%)
Query 39 TCTPNVTINCQDPAGGALIARCWYLHEGHQTAAFRDVLVVLN 80
+C P TINCQ+P G+L+ RC + + + + DV VVL+
Sbjct 68 SCLP-FTINCQEPKLGSLVVRCSFYEDFLE---YHDVRVVLD 105
>7jx6_B B ORF8 protein
Length=104
Score = 33.5 bits (75), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (62%), Gaps = 4/42 (10%)
Query 39 TCTPNVTINCQDPAGGALIARCWYLHEGHQTAAFRDVLVVLN 80
+C P TINCQ+P G+L+ RC + + + + DV VVL+
Sbjct 65 SCLP-FTINCQEPKLGSLVVRCSFYEDFLE---YHDVRVVLD 102
>7xmn_B B ORF8 protein
Length=106
Score = 33.5 bits (75), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (60%), Gaps = 4/42 (10%)
Query 39 TCTPNVTINCQDPAGGALIARCWYLHEGHQTAAFRDVLVVLN 80
+C P TINCQ+P G+L+ RC + + + DV VVL+
Sbjct 67 SCLP-FTINCQEPKLGSLVVRCSFYED---FLEYHDVRVVLD 104
>7jx6_A A ORF8 protein
Length=104
Score = 33.1 bits (74), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (62%), Gaps = 4/42 (10%)
Query 39 TCTPNVTINCQDPAGGALIARCWYLHEGHQTAAFRDVLVVLN 80
+C P TINCQ+P G+L+ RC + + + + DV VVL+
Sbjct 65 SCLP-FTINCQEPKLGSLVVRCSFYEDFLE---YHDVRVVLD 102
>7mx9_A A ORF8 protein
Length=113
Score = 33.5 bits (75), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (62%), Gaps = 4/42 (10%)
Query 39 TCTPNVTINCQDPAGGALIARCWYLHEGHQTAAFRDVLVVLN 80
+C P TINCQ+P G+L+ RC + + + + DV VVL+
Sbjct 74 SCLP-FTINCQEPKLGSLVVRCSFYEDFLE---YHDVRVVLD 111
>7jtl_B B ORF8 protein
Length=107
Score = 33.1 bits (74), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (62%), Gaps = 4/42 (10%)
Query 39 TCTPNVTINCQDPAGGALIARCWYLHEGHQTAAFRDVLVVLN 80
+C P TINCQ+P G+L+ RC + + + + DV VVL+
Sbjct 68 SCLP-FTINCQEPKLGSLVVRCSFYEDFLE---YHDVRVVLD 105
>4tvs_B B Torsin-1A-interacting protein 1
Length=231
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (66%), Gaps = 3/29 (10%)
Query 51 PAGGALIARCWYLHEGHQTAAFRDVLVVL 79
PAG LI +Y + H+ AAF+DV +VL
Sbjct 133 PAGSTLI---FYKYCDHENAAFKDVALVL 158
>4tvs_A A Torsin-1A-interacting protein 1
Length=231
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (66%), Gaps = 3/29 (10%)
Query 51 PAGGALIARCWYLHEGHQTAAFRDVLVVL 79
PAG LI +Y + H+ AAF+DV +VL
Sbjct 133 PAGSTLI---FYKYCDHENAAFKDVALVL 158
Lambda K H a alpha
0.328 0.137 0.478 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 6013929785
Database: unitmol_20240403.fasta
Posted date: Apr 4, 2024 8:53 PM
Number of letters in database: 237,935,689
Number of sequences in database: 829,018
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40