BLASTP 2.11.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: unitmol_20240403.fasta
           829,018 sequences; 237,935,689 total letters



Query= sp|Q7TFA0|NS8A_SARS ORF8a protein OS=Severe acute respiratory
syndrome coronavirus OX=694009 GN=8a PE=3 SV=1

Length=39
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

6shl_B B VP2                                                          28.9    0.83 
7f8l_B B Nonstructural protein NS8                                    25.8    9.6  
7f8l_A A Nonstructural protein NS8                                    25.8    9.6  


>6shl_B B VP2
Length=231

 Score = 28.9 bits (63),  Expect = 0.83, Method: Composition-based stats.
 Identities = 10/15 (67%), Positives = 12/15 (80%), Gaps = 0/15 (0%)

Query  24   ASNKPHVLEDPCKVQ  38
            ASNKPH+L DPC  +
Sbjct  148  ASNKPHILLDPCSSE  162


>7f8l_B B Nonstructural protein NS8
Length=107

 Score = 25.8 bits (55),  Expect = 9.6, Method: Compositional matrix adjust.
 Identities = 8/18 (44%), Positives = 15/18 (83%), Gaps = 0/18 (0%)

Query  20  VQRCASNKPHVLEDPCKV  37
           +Q CA ++P+V++DPC +
Sbjct  8   LQSCAQHQPYVVDDPCPI  25


>7f8l_A A Nonstructural protein NS8
Length=107

 Score = 25.8 bits (55),  Expect = 9.6, Method: Compositional matrix adjust.
 Identities = 8/18 (44%), Positives = 15/18 (83%), Gaps = 0/18 (0%)

Query  20  VQRCASNKPHVLEDPCKV  37
           +Q CA ++P+V++DPC +
Sbjct  8   LQSCAQHQPYVVDDPCPI  25



Lambda      K        H        a         alpha
   0.332    0.138    0.475    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 5906119830


  Database: unitmol_20240403.fasta
    Posted date:  Apr 4, 2024  8:53 PM
  Number of letters in database: 237,935,689
  Number of sequences in database:  829,018



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40