BLASTP 2.11.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: unitmol_20240403.fasta
           829,018 sequences; 237,935,689 total letters



Query= sp|P59635|NS7A_SARS ORF7a protein OS=Severe acute respiratory
syndrome coronavirus OX=694009 GN=7a PE=1 SV=1

Length=122
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

1yo4_A A Hypothetical protein X4                                      179     1e-58
1xak_A A SARS ORF7A ACCESSORY PROTEIN                                 147     4e-46
7ci3_A A Orf7a protein                                                133     1e-40
6w37_A A ORF7a protein                                                128     6e-39


>1yo4_A A Hypothetical protein X4
Length=87

 Score = 179 bits (453),  Expect = 1e-58, Method: Compositional matrix adjust.
 Identities = 84/84 (100%), Positives = 84/84 (100%), Gaps = 0/84 (0%)

Query  16  ELYHYQECVRGTTVLLKEPCPSGTYEGNSPFHPLADNKFALTCTSTHFAFACADGTRHTY  75
           ELYHYQECVRGTTVLLKEPCPSGTYEGNSPFHPLADNKFALTCTSTHFAFACADGTRHTY
Sbjct  3   ELYHYQECVRGTTVLLKEPCPSGTYEGNSPFHPLADNKFALTCTSTHFAFACADGTRHTY  62

Query  76  QLRARSVSPKLFIRQEEVQQELYS  99
           QLRARSVSPKLFIRQEEVQQELYS
Sbjct  63  QLRARSVSPKLFIRQEEVQQELYS  86


>1xak_A A SARS ORF7A ACCESSORY PROTEIN
Length=83

 Score = 147 bits (370),  Expect = 4e-46, Method: Compositional matrix adjust.
 Identities = 67/68 (99%), Positives = 68/68 (100%), Gaps = 0/68 (0%)

Query  15  CELYHYQECVRGTTVLLKEPCPSGTYEGNSPFHPLADNKFALTCTSTHFAFACADGTRHT  74
           CELYHYQECVRGTTV+LKEPCPSGTYEGNSPFHPLADNKFALTCTSTHFAFACADGTRHT
Sbjct  2   CELYHYQECVRGTTVILKEPCPSGTYEGNSPFHPLADNKFALTCTSTHFAFACADGTRHT  61

Query  75  YQLRARSV  82
           YQLRARSV
Sbjct  62  YQLRARSV  69


>7ci3_A A Orf7a protein
Length=84

 Score = 133 bits (334),  Expect = 1e-40, Method: Compositional matrix adjust.
 Identities = 61/69 (88%), Positives = 63/69 (91%), Gaps = 0/69 (0%)

Query  14  SCELYHYQECVRGTTVLLKEPCPSGTYEGNSPFHPLADNKFALTCTSTHFAFACADGTRH  73
           +CELYHYQECVRGTTVLLKEPC SGTYEGNSPFHPLADNKFALTC ST FAFAC DG +H
Sbjct  2   TCELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHPLADNKFALTCFSTQFAFACPDGVKH  61

Query  74  TYQLRARSV  82
            YQLRARSV
Sbjct  62  VYQLRARSV  70


>6w37_A A ORF7a protein
Length=67

 Score = 128 bits (321),  Expect = 6e-39, Method: Compositional matrix adjust.
 Identities = 59/66 (89%), Positives = 60/66 (91%), Gaps = 0/66 (0%)

Query  16  ELYHYQECVRGTTVLLKEPCPSGTYEGNSPFHPLADNKFALTCTSTHFAFACADGTRHTY  75
           ELYHYQECVRGTTVLLKEPC SGTYEGNSPFHPLADNKFALTC ST FAFAC DG +H Y
Sbjct  1   ELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHPLADNKFALTCFSTQFAFACPDGVKHVY  60

Query  76  QLRARS  81
           QLRARS
Sbjct  61  QLRARS  66



Lambda      K        H        a         alpha
   0.329    0.140    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 5803389305


  Database: unitmol_20240403.fasta
    Posted date:  Apr 4, 2024  8:53 PM
  Number of letters in database: 237,935,689
  Number of sequences in database:  829,018



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40