BLASTP 2.11.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: unitmol_20240403.fasta
           829,018 sequences; 237,935,689 total letters



Query= sp|P0DTD3|ORF9C_SARS2 Putative ORF9c protein OS=Severe acute
respiratory syndrome coronavirus 2 OX=2697049 GN=9c PE=5 SV=1

Length=73
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

7jpt_A A Lymphocyte antigen 75                                        30.0    1.7  
7jpu_C C Lymphocyte antigen 75                                        29.6    2.1  
7jpu_B B Lymphocyte antigen 75                                        29.6    2.1  
7jpu_A A Lymphocyte antigen 75                                        29.6    2.1  
7jpu_D D Lymphocyte antigen 75                                        29.6    2.1  


>7jpt_A A Lymphocyte antigen 75
Length=1693

 Score = 30.0 bits (66),  Expect = 1.7, Method: Composition-based stats.
 Identities = 16/60 (27%), Positives = 29/60 (48%), Gaps = 0/60 (0%)

Query  5     CYNFLKEQHCQKASTQKGAEAAVKPLLVPHHVVATVQEIQLQAAVGELLLLEWLAMAVML  64
             CYNF+  ++   A+TQ       + L    H+++   E +    + +LL   ++A  VML
Sbjct  1226  CYNFIITKNRHMATTQDEVHTKCQKLNPKSHILSIRDEKENNFVLEQLLYFNYMASWVML  1285


>7jpu_C C Lymphocyte antigen 75
Length=1722

 Score = 29.6 bits (65),  Expect = 2.1, Method: Composition-based stats.
 Identities = 16/60 (27%), Positives = 29/60 (48%), Gaps = 0/60 (0%)

Query  5     CYNFLKEQHCQKASTQKGAEAAVKPLLVPHHVVATVQEIQLQAAVGELLLLEWLAMAVML  64
             CYNF+  ++   A+TQ       + L    H+++   E +    + +LL   ++A  VML
Sbjct  1255  CYNFIITKNRHMATTQDEVHTKCQKLNPKSHILSIRDEKENNFVLEQLLYFNYMASWVML  1314


>7jpu_B B Lymphocyte antigen 75
Length=1722

 Score = 29.6 bits (65),  Expect = 2.1, Method: Composition-based stats.
 Identities = 16/60 (27%), Positives = 29/60 (48%), Gaps = 0/60 (0%)

Query  5     CYNFLKEQHCQKASTQKGAEAAVKPLLVPHHVVATVQEIQLQAAVGELLLLEWLAMAVML  64
             CYNF+  ++   A+TQ       + L    H+++   E +    + +LL   ++A  VML
Sbjct  1255  CYNFIITKNRHMATTQDEVHTKCQKLNPKSHILSIRDEKENNFVLEQLLYFNYMASWVML  1314


>7jpu_A A Lymphocyte antigen 75
Length=1722

 Score = 29.6 bits (65),  Expect = 2.1, Method: Composition-based stats.
 Identities = 16/60 (27%), Positives = 29/60 (48%), Gaps = 0/60 (0%)

Query  5     CYNFLKEQHCQKASTQKGAEAAVKPLLVPHHVVATVQEIQLQAAVGELLLLEWLAMAVML  64
             CYNF+  ++   A+TQ       + L    H+++   E +    + +LL   ++A  VML
Sbjct  1255  CYNFIITKNRHMATTQDEVHTKCQKLNPKSHILSIRDEKENNFVLEQLLYFNYMASWVML  1314


>7jpu_D D Lymphocyte antigen 75
Length=1722

 Score = 29.6 bits (65),  Expect = 2.1, Method: Composition-based stats.
 Identities = 16/60 (27%), Positives = 29/60 (48%), Gaps = 0/60 (0%)

Query  5     CYNFLKEQHCQKASTQKGAEAAVKPLLVPHHVVATVQEIQLQAAVGELLLLEWLAMAVML  64
             CYNF+  ++   A+TQ       + L    H+++   E +    + +LL   ++A  VML
Sbjct  1255  CYNFIITKNRHMATTQDEVHTKCQKLNPKSHILSIRDEKENNFVLEQLLYFNYMASWVML  1314



Lambda      K        H        a         alpha
   0.327    0.134    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 5842308013


  Database: unitmol_20240403.fasta
    Posted date:  Apr 4, 2024  8:53 PM
  Number of letters in database: 237,935,689
  Number of sequences in database:  829,018



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40