[Multiple Alignment(many alignments)]
[Alignment Bar(many alignments)]
[show plain BLAST file]
BLASTP 2.11.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: unitmol_20240403.fasta
829,018 sequences; 237,935,689 total letters
Query= sp|P0DTC8|NS8_SARS2 ORF8 protein OS=Severe acute respiratory
syndrome coronavirus 2 OX=2697049 GN=8 PE=1 SV=1
Length=121
Score E
Sequences producing significant alignments: (Bits) Value
7jx6_A A ORF8 protein 218 6e-74
7f5f_A A ORF8 protein 215 5e-73
7xmn_B B ORF8 protein 213 4e-72
7jtl_A A ORF8 protein 212 7e-72
7f8l_B B Nonstructural protein NS8 212 1e-71
7f8l_A A Nonstructural protein NS8 212 1e-71
7jtl_B B ORF8 protein 210 5e-71
7jx6_B B ORF8 protein 179 2e-58
7mx9_A A ORF8 protein 177 9e-58
6mzj_D B 426c DS-SOSIP D3 30.8 3.5
6mzj_A A 426c DS-SOSIP D3 30.8 3.5
6myy_G E 426c DS-SOSIP D3 30.8 3.5
6myy_D B 426c DS-SOSIP D3 30.8 3.5
6myy_A A 426c DS-SOSIP D3 30.8 3.5
6mzj_G E 426c DS-SOSIP D3 30.8 3.5
5um8_A G glycoprotein gp120 30.8 3.7
6p65_G E HIV Env 16055 NFL TD 2CC+ 30.8 3.8
6p65_D B HIV Env 16055 NFL TD 2CC+ 30.8 3.8
6p65_A A HIV Env 16055 NFL TD 2CC+ 30.8 3.8
>7jx6_A A ORF8 protein
Length=104
Score = 218 bits (554), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 104/104 (100%), Positives = 104/104 (100%), Gaps = 0/104 (0%)
Query 18 QECSLQSCTQHQPYVVDDPCPIHFYSKWYIRVGARKSAPLIELCVDEAGSKSPIQYIDIG 77
QECSLQSCTQHQPYVVDDPCPIHFYSKWYIRVGARKSAPLIELCVDEAGSKSPIQYIDIG
Sbjct 1 QECSLQSCTQHQPYVVDDPCPIHFYSKWYIRVGARKSAPLIELCVDEAGSKSPIQYIDIG 60
Query 78 NYTVSCLPFTINCQEPKLGSLVVRCSFYEDFLEYHDVRVVLDFI 121
NYTVSCLPFTINCQEPKLGSLVVRCSFYEDFLEYHDVRVVLDFI
Sbjct 61 NYTVSCLPFTINCQEPKLGSLVVRCSFYEDFLEYHDVRVVLDFI 104
>7f5f_A A ORF8 protein
Length=104
Score = 215 bits (548), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 103/104 (99%), Positives = 103/104 (99%), Gaps = 0/104 (0%)
Query 18 QECSLQSCTQHQPYVVDDPCPIHFYSKWYIRVGARKSAPLIELCVDEAGSKSPIQYIDIG 77
QECSLQSCTQHQPYVVDDPCPIHFYSKWYIRVGARKSAPLIELCVDEAGSKSPIQYIDIG
Sbjct 1 QECSLQSCTQHQPYVVDDPCPIHFYSKWYIRVGARKSAPLIELCVDEAGSKSPIQYIDIG 60
Query 78 NYTVSCLPFTINCQEPKLGSLVVRCSFYEDFLEYHDVRVVLDFI 121
NYTVSC PFTINCQEPKLGSLVVRCSFYEDFLEYHDVRVVLDFI
Sbjct 61 NYTVSCSPFTINCQEPKLGSLVVRCSFYEDFLEYHDVRVVLDFI 104
>7xmn_B B ORF8 protein
Length=106
Score = 213 bits (542), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 102/106 (96%), Positives = 102/106 (96%), Gaps = 0/106 (0%)
Query 16 FHQECSLQSCTQHQPYVVDDPCPIHFYSKWYIRVGARKSAPLIELCVDEAGSKSPIQYID 75
FHQECSLQSCTQHQPYVVDDPCPIHFYSKWYIRVGARKSAPLIELCVDE SPIQYID
Sbjct 1 FHQECSLQSCTQHQPYVVDDPCPIHFYSKWYIRVGARKSAPLIELCVDEXXXXSPIQYID 60
Query 76 IGNYTVSCLPFTINCQEPKLGSLVVRCSFYEDFLEYHDVRVVLDFI 121
IGNYTVSCLPFTINCQEPKLGSLVVRCSFYEDFLEYHDVRVVLDFI
Sbjct 61 IGNYTVSCLPFTINCQEPKLGSLVVRCSFYEDFLEYHDVRVVLDFI 106
>7jtl_A A ORF8 protein
Length=107
Score = 212 bits (540), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 102/104 (98%), Positives = 102/104 (98%), Gaps = 0/104 (0%)
Query 18 QECSLQSCTQHQPYVVDDPCPIHFYSKWYIRVGARKSAPLIELCVDEAGSKSPIQYIDIG 77
QECSLQSCTQHQPYVVDDPCPIHFYSKWYIRVGARKSAPLIELCVDE SKSPIQYIDIG
Sbjct 4 QECSLQSCTQHQPYVVDDPCPIHFYSKWYIRVGARKSAPLIELCVDEXXSKSPIQYIDIG 63
Query 78 NYTVSCLPFTINCQEPKLGSLVVRCSFYEDFLEYHDVRVVLDFI 121
NYTVSCLPFTINCQEPKLGSLVVRCSFYEDFLEYHDVRVVLDFI
Sbjct 64 NYTVSCLPFTINCQEPKLGSLVVRCSFYEDFLEYHDVRVVLDFI 107
>7f8l_B B Nonstructural protein NS8
Length=107
Score = 212 bits (539), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 101/104 (97%), Positives = 101/104 (97%), Gaps = 0/104 (0%)
Query 18 QECSLQSCTQHQPYVVDDPCPIHFYSKWYIRVGARKSAPLIELCVDEAGSKSPIQYIDIG 77
QECSLQSC QHQPYVVDDPCPIHFYSKWYIRVGARKSAPLIELCVDE GSKSPIQYIDIG
Sbjct 4 QECSLQSCAQHQPYVVDDPCPIHFYSKWYIRVGARKSAPLIELCVDEVGSKSPIQYIDIG 63
Query 78 NYTVSCLPFTINCQEPKLGSLVVRCSFYEDFLEYHDVRVVLDFI 121
NYTVSC PFTINCQEPKLGSLVVRCSFYEDFLEYHDVRVVLDFI
Sbjct 64 NYTVSCSPFTINCQEPKLGSLVVRCSFYEDFLEYHDVRVVLDFI 107
>7f8l_A A Nonstructural protein NS8
Length=107
Score = 212 bits (539), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 101/104 (97%), Positives = 101/104 (97%), Gaps = 0/104 (0%)
Query 18 QECSLQSCTQHQPYVVDDPCPIHFYSKWYIRVGARKSAPLIELCVDEAGSKSPIQYIDIG 77
QECSLQSC QHQPYVVDDPCPIHFYSKWYIRVGARKSAPLIELCVDE GSKSPIQYIDIG
Sbjct 4 QECSLQSCAQHQPYVVDDPCPIHFYSKWYIRVGARKSAPLIELCVDEVGSKSPIQYIDIG 63
Query 78 NYTVSCLPFTINCQEPKLGSLVVRCSFYEDFLEYHDVRVVLDFI 121
NYTVSC PFTINCQEPKLGSLVVRCSFYEDFLEYHDVRVVLDFI
Sbjct 64 NYTVSCSPFTINCQEPKLGSLVVRCSFYEDFLEYHDVRVVLDFI 107
>7jtl_B B ORF8 protein
Length=107
Score = 210 bits (535), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 101/104 (97%), Positives = 101/104 (97%), Gaps = 0/104 (0%)
Query 18 QECSLQSCTQHQPYVVDDPCPIHFYSKWYIRVGARKSAPLIELCVDEAGSKSPIQYIDIG 77
QECSLQSCTQHQPYVVDDPCPIHFYSKWYIRVGARKSAPLIELCVDEA SPIQYIDIG
Sbjct 4 QECSLQSCTQHQPYVVDDPCPIHFYSKWYIRVGARKSAPLIELCVDEAXXXSPIQYIDIG 63
Query 78 NYTVSCLPFTINCQEPKLGSLVVRCSFYEDFLEYHDVRVVLDFI 121
NYTVSCLPFTINCQEPKLGSLVVRCSFYEDFLEYHDVRVVLDFI
Sbjct 64 NYTVSCLPFTINCQEPKLGSLVVRCSFYEDFLEYHDVRVVLDFI 107
>7jx6_B B ORF8 protein
Length=104
Score = 179 bits (453), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 88/104 (85%), Positives = 88/104 (85%), Gaps = 0/104 (0%)
Query 18 QECSLQSCTQHQPYVVDDPCPIHFYSKWYIRVGARKSAPLIELCVDEAGSKSPIQYIDIG 77
QECSLQSCTQHQPYVVDDPCPIHFYSKWYIRVGARKSAPLIELCV
Sbjct 1 QECSLQSCTQHQPYVVDDPCPIHFYSKWYIRVGARKSAPLIELCVXXXXXXXXXXXXXXX 60
Query 78 NYTVSCLPFTINCQEPKLGSLVVRCSFYEDFLEYHDVRVVLDFI 121
YTVSCLPFTINCQEPKLGSLVVRCSFYEDFLEYHDVRVVLDFI
Sbjct 61 XYTVSCLPFTINCQEPKLGSLVVRCSFYEDFLEYHDVRVVLDFI 104
>7mx9_A A ORF8 protein
Length=113
Score = 177 bits (449), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 87/103 (84%), Positives = 87/103 (84%), Gaps = 0/103 (0%)
Query 19 ECSLQSCTQHQPYVVDDPCPIHFYSKWYIRVGARKSAPLIELCVDEAGSKSPIQYIDIGN 78
ECSLQSCTQHQPYVVDDPCPIHFYSKWYIRVGARKSAPLIELCV
Sbjct 11 ECSLQSCTQHQPYVVDDPCPIHFYSKWYIRVGARKSAPLIELCVXXXXXXXXXXXXXXXQ 70
Query 79 YTVSCLPFTINCQEPKLGSLVVRCSFYEDFLEYHDVRVVLDFI 121
YTVSCLPFTINCQEPKLGSLVVRCSFYEDFLEYHDVRVVLDFI
Sbjct 71 YTVSCLPFTINCQEPKLGSLVVRCSFYEDFLEYHDVRVVLDFI 113
>6mzj_D B 426c DS-SOSIP D3
Length=626
Score = 30.8 bits (68), Expect = 3.5, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 14/22 (64%), Gaps = 0/22 (0%)
Query 20 CSLQSCTQHQPYVVDDPCPIHF 41
C+ +CTQ P V DP PIH+
Sbjct 173 CNTSTCTQACPKVTFDPIPIHY 194
>6mzj_A A 426c DS-SOSIP D3
Length=626
Score = 30.8 bits (68), Expect = 3.5, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 14/22 (64%), Gaps = 0/22 (0%)
Query 20 CSLQSCTQHQPYVVDDPCPIHF 41
C+ +CTQ P V DP PIH+
Sbjct 173 CNTSTCTQACPKVTFDPIPIHY 194
>6myy_G E 426c DS-SOSIP D3
Length=626
Score = 30.8 bits (68), Expect = 3.5, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 14/22 (64%), Gaps = 0/22 (0%)
Query 20 CSLQSCTQHQPYVVDDPCPIHF 41
C+ +CTQ P V DP PIH+
Sbjct 173 CNTSTCTQACPKVTFDPIPIHY 194
>6myy_D B 426c DS-SOSIP D3
Length=626
Score = 30.8 bits (68), Expect = 3.5, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 14/22 (64%), Gaps = 0/22 (0%)
Query 20 CSLQSCTQHQPYVVDDPCPIHF 41
C+ +CTQ P V DP PIH+
Sbjct 173 CNTSTCTQACPKVTFDPIPIHY 194
>6myy_A A 426c DS-SOSIP D3
Length=626
Score = 30.8 bits (68), Expect = 3.5, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 14/22 (64%), Gaps = 0/22 (0%)
Query 20 CSLQSCTQHQPYVVDDPCPIHF 41
C+ +CTQ P V DP PIH+
Sbjct 173 CNTSTCTQACPKVTFDPIPIHY 194
>6mzj_G E 426c DS-SOSIP D3
Length=626
Score = 30.8 bits (68), Expect = 3.5, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 14/22 (64%), Gaps = 0/22 (0%)
Query 20 CSLQSCTQHQPYVVDDPCPIHF 41
C+ +CTQ P V DP PIH+
Sbjct 173 CNTSTCTQACPKVTFDPIPIHY 194
>5um8_A G glycoprotein gp120
Length=485
Score = 30.8 bits (68), Expect = 3.7, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 14/22 (64%), Gaps = 0/22 (0%)
Query 20 CSLQSCTQHQPYVVDDPCPIHF 41
C+ +CTQ P V DP PIH+
Sbjct 167 CNTSACTQACPKVTFDPIPIHY 188
>6p65_G E HIV Env 16055 NFL TD 2CC+
Length=680
Score = 30.8 bits (68), Expect = 3.8, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 14/22 (64%), Gaps = 0/22 (0%)
Query 20 CSLQSCTQHQPYVVDDPCPIHF 41
C+ +CTQ P V DP PIH+
Sbjct 191 CNTSACTQACPKVTFDPIPIHY 212
>6p65_D B HIV Env 16055 NFL TD 2CC+
Length=680
Score = 30.8 bits (68), Expect = 3.8, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 14/22 (64%), Gaps = 0/22 (0%)
Query 20 CSLQSCTQHQPYVVDDPCPIHF 41
C+ +CTQ P V DP PIH+
Sbjct 191 CNTSACTQACPKVTFDPIPIHY 212
>6p65_A A HIV Env 16055 NFL TD 2CC+
Length=680
Score = 30.8 bits (68), Expect = 3.8, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 14/22 (64%), Gaps = 0/22 (0%)
Query 20 CSLQSCTQHQPYVVDDPCPIHF 41
C+ +CTQ P V DP PIH+
Sbjct 191 CNTSACTQACPKVTFDPIPIHY 212
Lambda K H a alpha
0.328 0.143 0.463 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 5832404935
Database: unitmol_20240403.fasta
Posted date: Apr 4, 2024 8:53 PM
Number of letters in database: 237,935,689
Number of sequences in database: 829,018
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40