[Multiple Alignment(many alignments)]
[Alignment Bar(many alignments)]
[show plain BLAST file]
BLASTP 2.11.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: unitmol_20240403.fasta
829,018 sequences; 237,935,689 total letters
Query= sp|P0DTC3|AP3A_SARS2 ORF3a protein OS=Severe acute respiratory
syndrome coronavirus 2 OX=2697049 GN=3a PE=1 SV=1
Length=275
Score E
Sequences producing significant alignments: (Bits) Value
7kjr_B B ORF3a protein 398 4e-140
7kjr_A A ORF3a protein 398 4e-140
6xdc_B B ORF3a protein 398 4e-140
6xdc_A A ORF3a protein 398 4e-140
8eqj_A A ORF3a protein 396 2e-138
8eqj_B B ORF3a protein 396 2e-138
8eqt_A A ORF3a protein 393 2e-137
8eqt_B B ORF3a protein 393 2e-137
8equ_B B ORF3a protein 393 2e-137
8equ_A A ORF3a protein 393 2e-137
8eqs_B B ORF3a protein 315 1e-106
8eqs_A A ORF3a protein 315 1e-106
>7kjr_B B ORF3a protein
Length=284
Score = 398 bits (1023), Expect = 4e-140, Method: Compositional matrix adjust.
Identities = 193/199 (97%), Positives = 193/199 (97%), Gaps = 0/199 (0%)
Query 40 SLPFGWLIVGVALLAVFQSASKIITLKKRWQLALSKGVHFVCNLLLLFVTVYSHLLLVAA 99
SLPFGWLIVGVALLAVFQSASKIITLKKRWQLALSKGVHFVCNLLLLFVTVYSHLLLVAA
Sbjct 40 SLPFGWLIVGVALLAVFQSASKIITLKKRWQLALSKGVHFVCNLLLLFVTVYSHLLLVAA 99
Query 100 GLEAPFLYLYALVYFLQSINFVRIIMRLWLCWKCRSKNPLLYDANYFLCWHTNCYDYCIP 159
GLEAPFLYLYALVYFLQSINFVRIIMRLWLCWKCRSKNPLLYDANYFLCWHTNCYDYCIP
Sbjct 100 GLEAPFLYLYALVYFLQSINFVRIIMRLWLCWKCRSKNPLLYDANYFLCWHTNCYDYCIP 159
Query 160 YNSVTSSIVITSGDGTTSPISEHDYQIGGYTEKWESGVKDCVVLHSYFTSDYYQLYSTQL 219
YNSVTSSIVITSGDG EHDYQIGGYTEKWESGVKDCVVLHSYFTSDYYQLYSTQL
Sbjct 160 YNSVTSSIVITSGDGXXXXXXEHDYQIGGYTEKWESGVKDCVVLHSYFTSDYYQLYSTQL 219
Query 220 STDTGVEHVTFFIYNKIVD 238
STDTGVEHVTFFIYNKIVD
Sbjct 220 STDTGVEHVTFFIYNKIVD 238
>7kjr_A A ORF3a protein
Length=284
Score = 398 bits (1023), Expect = 4e-140, Method: Compositional matrix adjust.
Identities = 193/199 (97%), Positives = 193/199 (97%), Gaps = 0/199 (0%)
Query 40 SLPFGWLIVGVALLAVFQSASKIITLKKRWQLALSKGVHFVCNLLLLFVTVYSHLLLVAA 99
SLPFGWLIVGVALLAVFQSASKIITLKKRWQLALSKGVHFVCNLLLLFVTVYSHLLLVAA
Sbjct 40 SLPFGWLIVGVALLAVFQSASKIITLKKRWQLALSKGVHFVCNLLLLFVTVYSHLLLVAA 99
Query 100 GLEAPFLYLYALVYFLQSINFVRIIMRLWLCWKCRSKNPLLYDANYFLCWHTNCYDYCIP 159
GLEAPFLYLYALVYFLQSINFVRIIMRLWLCWKCRSKNPLLYDANYFLCWHTNCYDYCIP
Sbjct 100 GLEAPFLYLYALVYFLQSINFVRIIMRLWLCWKCRSKNPLLYDANYFLCWHTNCYDYCIP 159
Query 160 YNSVTSSIVITSGDGTTSPISEHDYQIGGYTEKWESGVKDCVVLHSYFTSDYYQLYSTQL 219
YNSVTSSIVITSGDG EHDYQIGGYTEKWESGVKDCVVLHSYFTSDYYQLYSTQL
Sbjct 160 YNSVTSSIVITSGDGXXXXXXEHDYQIGGYTEKWESGVKDCVVLHSYFTSDYYQLYSTQL 219
Query 220 STDTGVEHVTFFIYNKIVD 238
STDTGVEHVTFFIYNKIVD
Sbjct 220 STDTGVEHVTFFIYNKIVD 238
>6xdc_B B ORF3a protein
Length=284
Score = 398 bits (1023), Expect = 4e-140, Method: Compositional matrix adjust.
Identities = 193/199 (97%), Positives = 193/199 (97%), Gaps = 0/199 (0%)
Query 40 SLPFGWLIVGVALLAVFQSASKIITLKKRWQLALSKGVHFVCNLLLLFVTVYSHLLLVAA 99
SLPFGWLIVGVALLAVFQSASKIITLKKRWQLALSKGVHFVCNLLLLFVTVYSHLLLVAA
Sbjct 40 SLPFGWLIVGVALLAVFQSASKIITLKKRWQLALSKGVHFVCNLLLLFVTVYSHLLLVAA 99
Query 100 GLEAPFLYLYALVYFLQSINFVRIIMRLWLCWKCRSKNPLLYDANYFLCWHTNCYDYCIP 159
GLEAPFLYLYALVYFLQSINFVRIIMRLWLCWKCRSKNPLLYDANYFLCWHTNCYDYCIP
Sbjct 100 GLEAPFLYLYALVYFLQSINFVRIIMRLWLCWKCRSKNPLLYDANYFLCWHTNCYDYCIP 159
Query 160 YNSVTSSIVITSGDGTTSPISEHDYQIGGYTEKWESGVKDCVVLHSYFTSDYYQLYSTQL 219
YNSVTSSIVITSGDG EHDYQIGGYTEKWESGVKDCVVLHSYFTSDYYQLYSTQL
Sbjct 160 YNSVTSSIVITSGDGXXXXXXEHDYQIGGYTEKWESGVKDCVVLHSYFTSDYYQLYSTQL 219
Query 220 STDTGVEHVTFFIYNKIVD 238
STDTGVEHVTFFIYNKIVD
Sbjct 220 STDTGVEHVTFFIYNKIVD 238
>6xdc_A A ORF3a protein
Length=284
Score = 398 bits (1023), Expect = 4e-140, Method: Compositional matrix adjust.
Identities = 193/199 (97%), Positives = 193/199 (97%), Gaps = 0/199 (0%)
Query 40 SLPFGWLIVGVALLAVFQSASKIITLKKRWQLALSKGVHFVCNLLLLFVTVYSHLLLVAA 99
SLPFGWLIVGVALLAVFQSASKIITLKKRWQLALSKGVHFVCNLLLLFVTVYSHLLLVAA
Sbjct 40 SLPFGWLIVGVALLAVFQSASKIITLKKRWQLALSKGVHFVCNLLLLFVTVYSHLLLVAA 99
Query 100 GLEAPFLYLYALVYFLQSINFVRIIMRLWLCWKCRSKNPLLYDANYFLCWHTNCYDYCIP 159
GLEAPFLYLYALVYFLQSINFVRIIMRLWLCWKCRSKNPLLYDANYFLCWHTNCYDYCIP
Sbjct 100 GLEAPFLYLYALVYFLQSINFVRIIMRLWLCWKCRSKNPLLYDANYFLCWHTNCYDYCIP 159
Query 160 YNSVTSSIVITSGDGTTSPISEHDYQIGGYTEKWESGVKDCVVLHSYFTSDYYQLYSTQL 219
YNSVTSSIVITSGDG EHDYQIGGYTEKWESGVKDCVVLHSYFTSDYYQLYSTQL
Sbjct 160 YNSVTSSIVITSGDGXXXXXXEHDYQIGGYTEKWESGVKDCVVLHSYFTSDYYQLYSTQL 219
Query 220 STDTGVEHVTFFIYNKIVD 238
STDTGVEHVTFFIYNKIVD
Sbjct 220 STDTGVEHVTFFIYNKIVD 238
>8eqj_A A ORF3a protein
Length=331
Score = 396 bits (1017), Expect = 2e-138, Method: Compositional matrix adjust.
Identities = 192/199 (96%), Positives = 192/199 (96%), Gaps = 0/199 (0%)
Query 40 SLPFGWLIVGVALLAVFQSASKIITLKKRWQLALSKGVHFVCNLLLLFVTVYSHLLLVAA 99
SLPFGWLIVGVALLAVFQSASKIITLKKRWQLALSKGVHFVCNLLLLFVTVYSHLLLVAA
Sbjct 40 SLPFGWLIVGVALLAVFQSASKIITLKKRWQLALSKGVHFVCNLLLLFVTVYSHLLLVAA 99
Query 100 GLEAPFLYLYALVYFLQSINFVRIIMRLWLCWKCRSKNPLLYDANYFLCWHTNCYDYCIP 159
GLEAPFLYLYALVYFLQSINFVRIIMRLWLCWKCRSKNPLLYDANYFLCWHTNCYDYCIP
Sbjct 100 GLEAPFLYLYALVYFLQSINFVRIIMRLWLCWKCRSKNPLLYDANYFLCWHTNCYDYCIP 159
Query 160 YNSVTSSIVITSGDGTTSPISEHDYQIGGYTEKWESGVKDCVVLHSYFTSDYYQLYSTQL 219
YNSVTSSIVITSGD EHDYQIGGYTEKWESGVKDCVVLHSYFTSDYYQLYSTQL
Sbjct 160 YNSVTSSIVITSGDXXXXXXXEHDYQIGGYTEKWESGVKDCVVLHSYFTSDYYQLYSTQL 219
Query 220 STDTGVEHVTFFIYNKIVD 238
STDTGVEHVTFFIYNKIVD
Sbjct 220 STDTGVEHVTFFIYNKIVD 238
>8eqj_B B ORF3a protein
Length=331
Score = 396 bits (1017), Expect = 2e-138, Method: Compositional matrix adjust.
Identities = 192/199 (96%), Positives = 192/199 (96%), Gaps = 0/199 (0%)
Query 40 SLPFGWLIVGVALLAVFQSASKIITLKKRWQLALSKGVHFVCNLLLLFVTVYSHLLLVAA 99
SLPFGWLIVGVALLAVFQSASKIITLKKRWQLALSKGVHFVCNLLLLFVTVYSHLLLVAA
Sbjct 40 SLPFGWLIVGVALLAVFQSASKIITLKKRWQLALSKGVHFVCNLLLLFVTVYSHLLLVAA 99
Query 100 GLEAPFLYLYALVYFLQSINFVRIIMRLWLCWKCRSKNPLLYDANYFLCWHTNCYDYCIP 159
GLEAPFLYLYALVYFLQSINFVRIIMRLWLCWKCRSKNPLLYDANYFLCWHTNCYDYCIP
Sbjct 100 GLEAPFLYLYALVYFLQSINFVRIIMRLWLCWKCRSKNPLLYDANYFLCWHTNCYDYCIP 159
Query 160 YNSVTSSIVITSGDGTTSPISEHDYQIGGYTEKWESGVKDCVVLHSYFTSDYYQLYSTQL 219
YNSVTSSIVITSGD EHDYQIGGYTEKWESGVKDCVVLHSYFTSDYYQLYSTQL
Sbjct 160 YNSVTSSIVITSGDXXXXXXXEHDYQIGGYTEKWESGVKDCVVLHSYFTSDYYQLYSTQL 219
Query 220 STDTGVEHVTFFIYNKIVD 238
STDTGVEHVTFFIYNKIVD
Sbjct 220 STDTGVEHVTFFIYNKIVD 238
>8eqt_A A ORF3a protein
Length=331
Score = 393 bits (1010), Expect = 2e-137, Method: Compositional matrix adjust.
Identities = 191/199 (96%), Positives = 191/199 (96%), Gaps = 0/199 (0%)
Query 40 SLPFGWLIVGVALLAVFQSASKIITLKKRWQLALSKGVHFVCNLLLLFVTVYSHLLLVAA 99
SLPFGWLIVGVALLAVFQSASKIITLKKRWQLALSKGVHFVCNLLLLFVTVYSHLLLVAA
Sbjct 40 SLPFGWLIVGVALLAVFQSASKIITLKKRWQLALSKGVHFVCNLLLLFVTVYSHLLLVAA 99
Query 100 GLEAPFLYLYALVYFLQSINFVRIIMRLWLCWKCRSKNPLLYDANYFLCWHTNCYDYCIP 159
GLEAPFLYLYALVYFLQSINFVRIIMRLWLCWKCRSKNPLLYDANYFLCWHTNCYDYCIP
Sbjct 100 GLEAPFLYLYALVYFLQSINFVRIIMRLWLCWKCRSKNPLLYDANYFLCWHTNCYDYCIP 159
Query 160 YNSVTSSIVITSGDGTTSPISEHDYQIGGYTEKWESGVKDCVVLHSYFTSDYYQLYSTQL 219
YNSVTSSIVITSGD HDYQIGGYTEKWESGVKDCVVLHSYFTSDYYQLYSTQL
Sbjct 160 YNSVTSSIVITSGDXXXXXXXXHDYQIGGYTEKWESGVKDCVVLHSYFTSDYYQLYSTQL 219
Query 220 STDTGVEHVTFFIYNKIVD 238
STDTGVEHVTFFIYNKIVD
Sbjct 220 STDTGVEHVTFFIYNKIVD 238
>8eqt_B B ORF3a protein
Length=331
Score = 393 bits (1010), Expect = 2e-137, Method: Compositional matrix adjust.
Identities = 191/199 (96%), Positives = 191/199 (96%), Gaps = 0/199 (0%)
Query 40 SLPFGWLIVGVALLAVFQSASKIITLKKRWQLALSKGVHFVCNLLLLFVTVYSHLLLVAA 99
SLPFGWLIVGVALLAVFQSASKIITLKKRWQLALSKGVHFVCNLLLLFVTVYSHLLLVAA
Sbjct 40 SLPFGWLIVGVALLAVFQSASKIITLKKRWQLALSKGVHFVCNLLLLFVTVYSHLLLVAA 99
Query 100 GLEAPFLYLYALVYFLQSINFVRIIMRLWLCWKCRSKNPLLYDANYFLCWHTNCYDYCIP 159
GLEAPFLYLYALVYFLQSINFVRIIMRLWLCWKCRSKNPLLYDANYFLCWHTNCYDYCIP
Sbjct 100 GLEAPFLYLYALVYFLQSINFVRIIMRLWLCWKCRSKNPLLYDANYFLCWHTNCYDYCIP 159
Query 160 YNSVTSSIVITSGDGTTSPISEHDYQIGGYTEKWESGVKDCVVLHSYFTSDYYQLYSTQL 219
YNSVTSSIVITSGD HDYQIGGYTEKWESGVKDCVVLHSYFTSDYYQLYSTQL
Sbjct 160 YNSVTSSIVITSGDXXXXXXXXHDYQIGGYTEKWESGVKDCVVLHSYFTSDYYQLYSTQL 219
Query 220 STDTGVEHVTFFIYNKIVD 238
STDTGVEHVTFFIYNKIVD
Sbjct 220 STDTGVEHVTFFIYNKIVD 238
>8equ_B B ORF3a protein
Length=331
Score = 393 bits (1010), Expect = 2e-137, Method: Compositional matrix adjust.
Identities = 191/198 (96%), Positives = 191/198 (96%), Gaps = 0/198 (0%)
Query 40 SLPFGWLIVGVALLAVFQSASKIITLKKRWQLALSKGVHFVCNLLLLFVTVYSHLLLVAA 99
SLPFGWLIVGVALLAVFQSASKIITLKKRWQLALSKGVHFVCNLLLLFVTVYSHLLLVAA
Sbjct 40 SLPFGWLIVGVALLAVFQSASKIITLKKRWQLALSKGVHFVCNLLLLFVTVYSHLLLVAA 99
Query 100 GLEAPFLYLYALVYFLQSINFVRIIMRLWLCWKCRSKNPLLYDANYFLCWHTNCYDYCIP 159
GLEAPFLYLYALVYFLQSINFVRIIMRLWLCWKCRSKNPLLYDANYFLCWHTNCYDYCIP
Sbjct 100 GLEAPFLYLYALVYFLQSINFVRIIMRLWLCWKCRSKNPLLYDANYFLCWHTNCYDYCIP 159
Query 160 YNSVTSSIVITSGDGTTSPISEHDYQIGGYTEKWESGVKDCVVLHSYFTSDYYQLYSTQL 219
YNSVTSSIVITSGD EHDYQIGGYTEKWESGVKDCVVLHSYFTSDYYQLYSTQL
Sbjct 160 YNSVTSSIVITSGDXXXXXXXEHDYQIGGYTEKWESGVKDCVVLHSYFTSDYYQLYSTQL 219
Query 220 STDTGVEHVTFFIYNKIV 237
STDTGVEHVTFFIYNKIV
Sbjct 220 STDTGVEHVTFFIYNKIV 237
>8equ_A A ORF3a protein
Length=331
Score = 393 bits (1010), Expect = 2e-137, Method: Compositional matrix adjust.
Identities = 191/198 (96%), Positives = 191/198 (96%), Gaps = 0/198 (0%)
Query 40 SLPFGWLIVGVALLAVFQSASKIITLKKRWQLALSKGVHFVCNLLLLFVTVYSHLLLVAA 99
SLPFGWLIVGVALLAVFQSASKIITLKKRWQLALSKGVHFVCNLLLLFVTVYSHLLLVAA
Sbjct 40 SLPFGWLIVGVALLAVFQSASKIITLKKRWQLALSKGVHFVCNLLLLFVTVYSHLLLVAA 99
Query 100 GLEAPFLYLYALVYFLQSINFVRIIMRLWLCWKCRSKNPLLYDANYFLCWHTNCYDYCIP 159
GLEAPFLYLYALVYFLQSINFVRIIMRLWLCWKCRSKNPLLYDANYFLCWHTNCYDYCIP
Sbjct 100 GLEAPFLYLYALVYFLQSINFVRIIMRLWLCWKCRSKNPLLYDANYFLCWHTNCYDYCIP 159
Query 160 YNSVTSSIVITSGDGTTSPISEHDYQIGGYTEKWESGVKDCVVLHSYFTSDYYQLYSTQL 219
YNSVTSSIVITSGD EHDYQIGGYTEKWESGVKDCVVLHSYFTSDYYQLYSTQL
Sbjct 160 YNSVTSSIVITSGDXXXXXXXEHDYQIGGYTEKWESGVKDCVVLHSYFTSDYYQLYSTQL 219
Query 220 STDTGVEHVTFFIYNKIV 237
STDTGVEHVTFFIYNKIV
Sbjct 220 STDTGVEHVTFFIYNKIV 237
>8eqs_B B ORF3a protein
Length=330
Score = 315 bits (807), Expect = 1e-106, Method: Compositional matrix adjust.
Identities = 147/198 (74%), Positives = 168/198 (85%), Gaps = 0/198 (0%)
Query 40 SLPFGWLIVGVALLAVFQSASKIITLKKRWQLALSKGVHFVCNLLLLFVTVYSHLLLVAA 99
SLPFGWL++GVA LAVFQSA+KII L KRWQLAL KG F+CNLLLLFVT+YSHLLLVAA
Sbjct 40 SLPFGWLVIGVAFLAVFQSATKIIALNKRWQLALYKGFQFICNLLLLFVTIYSHLLLVAA 99
Query 100 GLEAPFLYLYALVYFLQSINFVRIIMRLWLCWKCRSKNPLLYDANYFLCWHTNCYDYCIP 159
G+EA FLYLYAL+YFLQ IN RIIMR WLCWKC+SKNPLLYDANYF+CWHT+ YDYCIP
Sbjct 100 GMEAQFLYLYALIYFLQCINACRIIMRCWLCWKCKSKNPLLYDANYFVCWHTHNYDYCIP 159
Query 160 YNSVTSSIVITSGDGTTSPISEHDYQIGGYTEKWESGVKDCVVLHSYFTSDYYQLYSTQL 219
YNSVT +IV+T GDG + DYQIGGY+E SGVKD VV+H YFT YYQL STQ+
Sbjct 160 YNSVTDTIVVTEGDGXXXXXXKEDYQIGGYSEDRHSGVKDYVVVHGYFTEVYYQLESTQI 219
Query 220 STDTGVEHVTFFIYNKIV 237
+TDTG+E+ TFFI+NK+V
Sbjct 220 TTDTGIENATFFIFNKLV 237
>8eqs_A A ORF3a protein
Length=330
Score = 315 bits (807), Expect = 1e-106, Method: Compositional matrix adjust.
Identities = 147/198 (74%), Positives = 168/198 (85%), Gaps = 0/198 (0%)
Query 40 SLPFGWLIVGVALLAVFQSASKIITLKKRWQLALSKGVHFVCNLLLLFVTVYSHLLLVAA 99
SLPFGWL++GVA LAVFQSA+KII L KRWQLAL KG F+CNLLLLFVT+YSHLLLVAA
Sbjct 40 SLPFGWLVIGVAFLAVFQSATKIIALNKRWQLALYKGFQFICNLLLLFVTIYSHLLLVAA 99
Query 100 GLEAPFLYLYALVYFLQSINFVRIIMRLWLCWKCRSKNPLLYDANYFLCWHTNCYDYCIP 159
G+EA FLYLYAL+YFLQ IN RIIMR WLCWKC+SKNPLLYDANYF+CWHT+ YDYCIP
Sbjct 100 GMEAQFLYLYALIYFLQCINACRIIMRCWLCWKCKSKNPLLYDANYFVCWHTHNYDYCIP 159
Query 160 YNSVTSSIVITSGDGTTSPISEHDYQIGGYTEKWESGVKDCVVLHSYFTSDYYQLYSTQL 219
YNSVT +IV+T GDG + DYQIGGY+E SGVKD VV+H YFT YYQL STQ+
Sbjct 160 YNSVTDTIVVTEGDGXXXXXXKEDYQIGGYSEDRHSGVKDYVVVHGYFTEVYYQLESTQI 219
Query 220 STDTGVEHVTFFIYNKIV 237
+TDTG+E+ TFFI+NK+V
Sbjct 220 TTDTGIENATFFIFNKLV 237
Lambda K H a alpha
0.324 0.138 0.435 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 22541366559
Database: unitmol_20240403.fasta
Posted date: Apr 4, 2024 8:53 PM
Number of letters in database: 237,935,689
Number of sequences in database: 829,018
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40