[Multiple Alignment(many alignments)]
[Alignment Bar(many alignments)]
[show plain BLAST file]
BLASTP 2.11.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: unitmol_20240904.fasta
870,205 sequences; 251,418,593 total letters
Query= sp|Q96JC1|VPS39_HUMAN Vam6/Vps39-like protein OS=Homo sapiens
OX=9606 GN=VPS39 PE=1 SV=2
Length=886
Score E
Sequences producing significant alignments: (Bits) Value
6ze9_B B Vam6/Vps39-like protein 85.1 3e-19
6ze9_A A Vam6/Vps39-like protein 85.1 3e-19
6ze9_C C Vam6/Vps39-like protein 71.2 3e-14
7zty_A A CNH domain-containing protein 65.9 1e-09
5o51_A A Rho guanyl nucleotide exchange factor (Rom2), putative 43.9 0.006
>6ze9_B B Vam6/Vps39-like protein
Length=44
Score = 85.1 bits (209), Expect = 3e-19, Method: Composition-based stats.
Identities = 36/36 (100%), Positives = 36/36 (100%), Gaps = 0/36 (0%)
Query 851 VCMVCKKKIGNSAFARYPNGVVVHYFCSKEVNPADT 886
VCMVCKKKIGNSAFARYPNGVVVHYFCSKEVNPADT
Sbjct 9 VCMVCKKKIGNSAFARYPNGVVVHYFCSKEVNPADT 44
>6ze9_A A Vam6/Vps39-like protein
Length=44
Score = 85.1 bits (209), Expect = 3e-19, Method: Composition-based stats.
Identities = 36/36 (100%), Positives = 36/36 (100%), Gaps = 0/36 (0%)
Query 851 VCMVCKKKIGNSAFARYPNGVVVHYFCSKEVNPADT 886
VCMVCKKKIGNSAFARYPNGVVVHYFCSKEVNPADT
Sbjct 9 VCMVCKKKIGNSAFARYPNGVVVHYFCSKEVNPADT 44
>6ze9_C C Vam6/Vps39-like protein
Length=44
Score = 71.2 bits (173), Expect = 3e-14, Method: Composition-based stats.
Identities = 30/30 (100%), Positives = 30/30 (100%), Gaps = 0/30 (0%)
Query 851 VCMVCKKKIGNSAFARYPNGVVVHYFCSKE 880
VCMVCKKKIGNSAFARYPNGVVVHYFCSKE
Sbjct 9 VCMVCKKKIGNSAFARYPNGVVVHYFCSKE 38
>7zty_A A CNH domain-containing protein
Length=542
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/307 (21%), Positives = 135/307 (44%), Gaps = 45/307 (15%)
Query 75 KKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITT-VSKAKGASLFTCD---LQHTETG 130
+ I+Q+ ++ + LVSL + +HDL TF+ I + + + K AS F ++ TG
Sbjct 111 RAIEQLAIIKEANTLVSLSNYCVSLHDLHTFEPIASPLPRTKNASGFAVTSNIVKDPATG 170
Query 131 --EEVLRMCVAVKKKLQLYFWKDREFHELQGDFSVPDVPKSMAW-CENSICVGFKRDYYL 187
E + R+ V+VK++L L+ W + E E + + + +SM W C + G + +
Sbjct 171 IPEIISRLAVSVKRRLLLWSWHESELEEEVKEVVLTESIRSMTWACATRLVCGMNSGFVV 230
Query 188 IRVDGKGSIKELFPTGKQL--------------------------EPLVAPLADGKVAVG 221
+ V+ G+++++ +PL LADG++ +
Sbjct 231 VDVE-TGTVEDILGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPKPLCTKLADGQLLLA 289
Query 222 QDDLTVVLNEEGICTQKCALNWTDIPVAMEHQPPYIIAVLPRY---VEIRTFEPRLL--- 275
+D T+ +++ G +K + W P + + PYI+A+ P +E+R + L
Sbjct 290 KDVNTLFIDDTGKALEKRQIPWQAAPDGIGYSYPYILALQPPAKGCLEVRNPDTLSLLQT 349
Query 276 -----VQSIELQRPRFITSGGSNIIYVASNHFVWRLIPVPMATQIQQLLQDKQFELALQL 330
++ +V S+ VW++ +Q+++L++ + + A+ +
Sbjct 350 LSLPGAAALHFPXXXXXXXXXGKGFHVLSDRVVWKMDATDYDSQVEELVRGGKLDEAISV 409
Query 331 AEMKDDS 337
M +D+
Sbjct 410 LTMLEDA 416
>5o51_A A Rho guanyl nucleotide exchange factor (Rom2), putative
Length=338
Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/148 (20%), Positives = 63/148 (43%), Gaps = 10/148 (7%)
Query 160 DFSVPDVPKSMAWCENSICVGFKRDYYLIRV---------DGKGSIKELFPTGKQLEPLV 210
++ +P S+ + +++CVG R + ++ + D + + + ++P+
Sbjct 173 EYYIPAESSSIHFLRSTLCVGCARGFEVVSLETTETQSLLDQADTSLDFVARKENVKPIH 232
Query 211 APLADGKVAVGQDDLTVVLNEEGICTQ-KCALNWTDIPVAMEHQPPYIIAVLPRYVEIRT 269
+G+ + D + +N G + ++W P A PYI+A P ++EIR
Sbjct 233 IERMNGEFLLNYSDFSFFVNRNGWRARPDWKISWEGNPNAFALSYPYILAFEPNFIEIRH 292
Query 270 FEPRLLVQSIELQRPRFITSGGSNIIYV 297
E L+ + + R + S I+Y
Sbjct 293 IETSELIHIMTGKNIRMLHSSTREILYA 320
Lambda K H a alpha
0.321 0.138 0.410 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 106945041522
Database: unitmol_20240904.fasta
Posted date: Sep 5, 2024 12:15 PM
Number of letters in database: 251,418,593
Number of sequences in database: 870,205
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40