[Multiple Alignment(many alignments)]
[Alignment Bar(many alignments)]
[show plain BLAST file]
BLASTP 2.11.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: unitmol_20240904.fasta
870,205 sequences; 251,418,593 total letters
Query= YP_009724395.1 ORF7a protein [Severe acute respiratory syndrome
coronavirus 2]
Length=121
Score E
Sequences producing significant alignments: (Bits) Value
1yo4_A A Hypothetical protein X4 158 2e-50
7ci3_A A Orf7a protein 150 3e-47
6w37_A A ORF7a protein 143 5e-45
1xak_A A SARS ORF7A ACCESSORY PROTEIN 133 9e-41
4mj7_B B rRNA-processing protein UTP23 29.3 8.3
>1yo4_A A Hypothetical protein X4
Length=87
Score = 158 bits (399), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 76/84 (90%), Positives = 77/84 (92%), Gaps = 1/84 (1%)
Query 16 ELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHPLADNKFALTCFSTQFAFACPDGVKHVY 75
ELYHYQECVRGTTVLLKEPC SGTYEGNSPFHPLADNKFALTC ST FAFAC DG +H Y
Sbjct 3 ELYHYQECVRGTTVLLKEPCPSGTYEGNSPFHPLADNKFALTCTSTHFAFACADGTRHTY 62
Query 76 QLRARSVSPKLFIRQEEV-QELYS 98
QLRARSVSPKLFIRQEEV QELYS
Sbjct 63 QLRARSVSPKLFIRQEEVQQELYS 86
>7ci3_A A Orf7a protein
Length=84
Score = 150 bits (378), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 69/69 (100%), Positives = 69/69 (100%), Gaps = 0/69 (0%)
Query 14 TCELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHPLADNKFALTCFSTQFAFACPDGVKH 73
TCELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHPLADNKFALTCFSTQFAFACPDGVKH
Sbjct 2 TCELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHPLADNKFALTCFSTQFAFACPDGVKH 61
Query 74 VYQLRARSV 82
VYQLRARSV
Sbjct 62 VYQLRARSV 70
>6w37_A A ORF7a protein
Length=67
Score = 143 bits (361), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 66/66 (100%), Positives = 66/66 (100%), Gaps = 0/66 (0%)
Query 16 ELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHPLADNKFALTCFSTQFAFACPDGVKHVY 75
ELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHPLADNKFALTCFSTQFAFACPDGVKHVY
Sbjct 1 ELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHPLADNKFALTCFSTQFAFACPDGVKHVY 60
Query 76 QLRARS 81
QLRARS
Sbjct 61 QLRARS 66
>1xak_A A SARS ORF7A ACCESSORY PROTEIN
Length=83
Score = 133 bits (335), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 60/68 (88%), Positives = 62/68 (91%), Gaps = 0/68 (0%)
Query 15 CELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHPLADNKFALTCFSTQFAFACPDGVKHV 74
CELYHYQECVRGTTV+LKEPC SGTYEGNSPFHPLADNKFALTC ST FAFAC DG +H
Sbjct 2 CELYHYQECVRGTTVILKEPCPSGTYEGNSPFHPLADNKFALTCTSTHFAFACADGTRHT 61
Query 75 YQLRARSV 82
YQLRARSV
Sbjct 62 YQLRARSV 69
>4mj7_B B rRNA-processing protein UTP23
Length=159
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (46%), Gaps = 7/61 (11%)
Query 37 SGTYEGNSPFHPLADNKFALTCFSTQFAFACPDGVKHVYQLRARSVSPKLFIRQEEVQEL 96
S T++ P+ L DN+ L C ++ F P G+K Q K+ I Q +Q L
Sbjct 17 SHTFKFREPYQVLVDNQLVLECNNSNFNL--PSGLKRTLQ-----ADVKVMITQCCIQAL 69
Query 97 Y 97
Y
Sbjct 70 Y 70
Lambda K H a alpha
0.329 0.140 0.429 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 6180333705
Database: unitmol_20240904.fasta
Posted date: Sep 5, 2024 12:15 PM
Number of letters in database: 251,418,593
Number of sequences in database: 870,205
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40