[Multiple Alignment(many alignments)]
[Alignment Bar(many alignments)]
[show plain BLAST file]
BLASTP 2.11.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: unitmol_20240605.fasta
844,130 sequences; 243,118,326 total letters
Query= sp|P59635|NS7A_SARS ORF7a protein OS=Severe acute respiratory
syndrome coronavirus OX=694009 GN=7a PE=1 SV=1
Length=122
Score E
Sequences producing significant alignments: (Bits) Value
1yo4_A A Hypothetical protein X4 179 1e-58
1xak_A A SARS ORF7A ACCESSORY PROTEIN 147 4e-46
7ci3_A A Orf7a protein 133 1e-40
6w37_A A ORF7a protein 128 6e-39
>1yo4_A A Hypothetical protein X4
Length=87
Score = 179 bits (453), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 84/84 (100%), Positives = 84/84 (100%), Gaps = 0/84 (0%)
Query 16 ELYHYQECVRGTTVLLKEPCPSGTYEGNSPFHPLADNKFALTCTSTHFAFACADGTRHTY 75
ELYHYQECVRGTTVLLKEPCPSGTYEGNSPFHPLADNKFALTCTSTHFAFACADGTRHTY
Sbjct 3 ELYHYQECVRGTTVLLKEPCPSGTYEGNSPFHPLADNKFALTCTSTHFAFACADGTRHTY 62
Query 76 QLRARSVSPKLFIRQEEVQQELYS 99
QLRARSVSPKLFIRQEEVQQELYS
Sbjct 63 QLRARSVSPKLFIRQEEVQQELYS 86
>1xak_A A SARS ORF7A ACCESSORY PROTEIN
Length=83
Score = 147 bits (370), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 67/68 (99%), Positives = 68/68 (100%), Gaps = 0/68 (0%)
Query 15 CELYHYQECVRGTTVLLKEPCPSGTYEGNSPFHPLADNKFALTCTSTHFAFACADGTRHT 74
CELYHYQECVRGTTV+LKEPCPSGTYEGNSPFHPLADNKFALTCTSTHFAFACADGTRHT
Sbjct 2 CELYHYQECVRGTTVILKEPCPSGTYEGNSPFHPLADNKFALTCTSTHFAFACADGTRHT 61
Query 75 YQLRARSV 82
YQLRARSV
Sbjct 62 YQLRARSV 69
>7ci3_A A Orf7a protein
Length=84
Score = 133 bits (334), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 61/69 (88%), Positives = 63/69 (91%), Gaps = 0/69 (0%)
Query 14 SCELYHYQECVRGTTVLLKEPCPSGTYEGNSPFHPLADNKFALTCTSTHFAFACADGTRH 73
+CELYHYQECVRGTTVLLKEPC SGTYEGNSPFHPLADNKFALTC ST FAFAC DG +H
Sbjct 2 TCELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHPLADNKFALTCFSTQFAFACPDGVKH 61
Query 74 TYQLRARSV 82
YQLRARSV
Sbjct 62 VYQLRARSV 70
>6w37_A A ORF7a protein
Length=67
Score = 128 bits (321), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 59/66 (89%), Positives = 60/66 (91%), Gaps = 0/66 (0%)
Query 16 ELYHYQECVRGTTVLLKEPCPSGTYEGNSPFHPLADNKFALTCTSTHFAFACADGTRHTY 75
ELYHYQECVRGTTVLLKEPC SGTYEGNSPFHPLADNKFALTC ST FAFAC DG +H Y
Sbjct 1 ELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHPLADNKFALTCFSTQFAFACPDGVKHVY 60
Query 76 QLRARS 81
QLRARS
Sbjct 61 QLRARS 66
Lambda K H a alpha
0.329 0.140 0.431 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 5938765560
Database: unitmol_20240605.fasta
Posted date: Jun 7, 2024 10:55 AM
Number of letters in database: 243,118,326
Number of sequences in database: 844,130
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40