[Multiple Alignment(many alignments)]
[Alignment Bar(many alignments)]
[show plain BLAST file]
BLASTP 2.11.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: unitmol_20240501.fasta
835,512 sequences; 240,313,072 total letters
Query= sp|P0DTD3|ORF9C_SARS2 Putative ORF9c protein OS=Severe acute
respiratory syndrome coronavirus 2 OX=2697049 GN=9c PE=5 SV=1
Length=73
Score E
Sequences producing significant alignments: (Bits) Value
7jpt_A A Lymphocyte antigen 75 30.0 1.7
7jpu_B B Lymphocyte antigen 75 29.6 2.1
7jpu_D D Lymphocyte antigen 75 29.6 2.1
7jpu_A A Lymphocyte antigen 75 29.6 2.1
7jpu_C C Lymphocyte antigen 75 29.6 2.1
>7jpt_A A Lymphocyte antigen 75
Length=1693
Score = 30.0 bits (66), Expect = 1.7, Method: Composition-based stats.
Identities = 16/60 (27%), Positives = 29/60 (48%), Gaps = 0/60 (0%)
Query 5 CYNFLKEQHCQKASTQKGAEAAVKPLLVPHHVVATVQEIQLQAAVGELLLLEWLAMAVML 64
CYNF+ ++ A+TQ + L H+++ E + + +LL ++A VML
Sbjct 1226 CYNFIITKNRHMATTQDEVHTKCQKLNPKSHILSIRDEKENNFVLEQLLYFNYMASWVML 1285
>7jpu_B B Lymphocyte antigen 75
Length=1722
Score = 29.6 bits (65), Expect = 2.1, Method: Composition-based stats.
Identities = 16/60 (27%), Positives = 29/60 (48%), Gaps = 0/60 (0%)
Query 5 CYNFLKEQHCQKASTQKGAEAAVKPLLVPHHVVATVQEIQLQAAVGELLLLEWLAMAVML 64
CYNF+ ++ A+TQ + L H+++ E + + +LL ++A VML
Sbjct 1255 CYNFIITKNRHMATTQDEVHTKCQKLNPKSHILSIRDEKENNFVLEQLLYFNYMASWVML 1314
>7jpu_D D Lymphocyte antigen 75
Length=1722
Score = 29.6 bits (65), Expect = 2.1, Method: Composition-based stats.
Identities = 16/60 (27%), Positives = 29/60 (48%), Gaps = 0/60 (0%)
Query 5 CYNFLKEQHCQKASTQKGAEAAVKPLLVPHHVVATVQEIQLQAAVGELLLLEWLAMAVML 64
CYNF+ ++ A+TQ + L H+++ E + + +LL ++A VML
Sbjct 1255 CYNFIITKNRHMATTQDEVHTKCQKLNPKSHILSIRDEKENNFVLEQLLYFNYMASWVML 1314
>7jpu_A A Lymphocyte antigen 75
Length=1722
Score = 29.6 bits (65), Expect = 2.1, Method: Composition-based stats.
Identities = 16/60 (27%), Positives = 29/60 (48%), Gaps = 0/60 (0%)
Query 5 CYNFLKEQHCQKASTQKGAEAAVKPLLVPHHVVATVQEIQLQAAVGELLLLEWLAMAVML 64
CYNF+ ++ A+TQ + L H+++ E + + +LL ++A VML
Sbjct 1255 CYNFIITKNRHMATTQDEVHTKCQKLNPKSHILSIRDEKENNFVLEQLLYFNYMASWVML 1314
>7jpu_C C Lymphocyte antigen 75
Length=1722
Score = 29.6 bits (65), Expect = 2.1, Method: Composition-based stats.
Identities = 16/60 (27%), Positives = 29/60 (48%), Gaps = 0/60 (0%)
Query 5 CYNFLKEQHCQKASTQKGAEAAVKPLLVPHHVVATVQEIQLQAAVGELLLLEWLAMAVML 64
CYNF+ ++ A+TQ + L H+++ E + + +LL ++A VML
Sbjct 1255 CYNFIITKNRHMATTQDEVHTKCQKLNPKSHILSIRDEKENNFVLEQLLYFNYMASWVML 1314
Lambda K H a alpha
0.327 0.134 0.412 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 5902965776
Database: unitmol_20240501.fasta
Posted date: May 2, 2024 10:24 AM
Number of letters in database: 240,313,072
Number of sequences in database: 835,512
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40