[Multiple Alignment(many alignments)]
[Alignment Bar(many alignments)]
[show plain BLAST file]
BLASTP 2.11.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: unitmol_20240904.fasta
870,205 sequences; 251,418,593 total letters
Query= sp|P0DTC4|VEMP_SARS2 Envelope small membrane protein OS=Severe acute
respiratory syndrome coronavirus 2 OX=2697049 GN=E PE=1 SV=1
Length=75
Score E
Sequences producing significant alignments: (Bits) Value
2mm4_A A Envelope small membrane protein 100 8e-29
5x29_A A Envelope small membrane protein 100 1e-28
5x29_D D Envelope small membrane protein 100 1e-28
5x29_B B Envelope small membrane protein 100 1e-28
5x29_E E Envelope small membrane protein 100 1e-28
5x29_C C Envelope small membrane protein 100 1e-28
7k3g_A A Envelope small membrane protein 56.2 1e-11
7k3g_B B Envelope small membrane protein 56.2 1e-11
7k3g_D D Envelope small membrane protein 56.2 1e-11
8suz_A A Envelope small membrane protein 56.2 1e-11
7k3g_E E Envelope small membrane protein 56.2 1e-11
7k3g_C C Envelope small membrane protein 56.2 1e-11
8suz_E E Envelope small membrane protein 56.2 1e-11
8suz_D D Envelope small membrane protein 56.2 1e-11
8suz_C C Envelope small membrane protein 56.2 1e-11
8suz_B B Envelope small membrane protein 56.2 1e-11
8u1t_A A Envelope small membrane protein 43.9 1e-06
8u1t_B B Envelope small membrane protein 43.9 1e-06
>2mm4_A A Envelope small membrane protein
Length=58
Score = 100 bits (249), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 53/58 (91%), Positives = 54/58 (93%), Gaps = 0/58 (0%)
Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYSRVKNL 65
ETGTLIVNSVLLFLAFVVFLLVTLAILTALRL AY NIVNVSLVKP+ YVYSRVKNL
Sbjct 1 ETGTLIVNSVLLFLAFVVFLLVTLAILTALRLAAYAANIVNVSLVKPTVYVYSRVKNL 58
>5x29_A A Envelope small membrane protein
Length=81
Score = 100 bits (249), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 53/58 (91%), Positives = 54/58 (93%), Gaps = 0/58 (0%)
Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYSRVKNL 65
ETGTLIVNSVLLFLAFVVFLLVTLAILTALRL AY NIVNVSLVKP+ YVYSRVKNL
Sbjct 24 ETGTLIVNSVLLFLAFVVFLLVTLAILTALRLAAYAANIVNVSLVKPTVYVYSRVKNL 81
>5x29_D D Envelope small membrane protein
Length=81
Score = 100 bits (249), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 53/58 (91%), Positives = 54/58 (93%), Gaps = 0/58 (0%)
Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYSRVKNL 65
ETGTLIVNSVLLFLAFVVFLLVTLAILTALRL AY NIVNVSLVKP+ YVYSRVKNL
Sbjct 24 ETGTLIVNSVLLFLAFVVFLLVTLAILTALRLAAYAANIVNVSLVKPTVYVYSRVKNL 81
>5x29_B B Envelope small membrane protein
Length=81
Score = 100 bits (249), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 53/58 (91%), Positives = 54/58 (93%), Gaps = 0/58 (0%)
Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYSRVKNL 65
ETGTLIVNSVLLFLAFVVFLLVTLAILTALRL AY NIVNVSLVKP+ YVYSRVKNL
Sbjct 24 ETGTLIVNSVLLFLAFVVFLLVTLAILTALRLAAYAANIVNVSLVKPTVYVYSRVKNL 81
>5x29_E E Envelope small membrane protein
Length=81
Score = 100 bits (249), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 53/58 (91%), Positives = 54/58 (93%), Gaps = 0/58 (0%)
Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYSRVKNL 65
ETGTLIVNSVLLFLAFVVFLLVTLAILTALRL AY NIVNVSLVKP+ YVYSRVKNL
Sbjct 24 ETGTLIVNSVLLFLAFVVFLLVTLAILTALRLAAYAANIVNVSLVKPTVYVYSRVKNL 81
>5x29_C C Envelope small membrane protein
Length=81
Score = 100 bits (249), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 53/58 (91%), Positives = 54/58 (93%), Gaps = 0/58 (0%)
Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYSRVKNL 65
ETGTLIVNSVLLFLAFVVFLLVTLAILTALRL AY NIVNVSLVKP+ YVYSRVKNL
Sbjct 24 ETGTLIVNSVLLFLAFVVFLLVTLAILTALRLAAYAANIVNVSLVKPTVYVYSRVKNL 81
>7k3g_A A Envelope small membrane protein
Length=31
Score = 56.2 bits (134), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/31 (100%), Positives = 31/31 (100%), Gaps = 0/31 (0%)
Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALR 38
ETGTLIVNSVLLFLAFVVFLLVTLAILTALR
Sbjct 1 ETGTLIVNSVLLFLAFVVFLLVTLAILTALR 31
>7k3g_B B Envelope small membrane protein
Length=31
Score = 56.2 bits (134), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/31 (100%), Positives = 31/31 (100%), Gaps = 0/31 (0%)
Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALR 38
ETGTLIVNSVLLFLAFVVFLLVTLAILTALR
Sbjct 1 ETGTLIVNSVLLFLAFVVFLLVTLAILTALR 31
>7k3g_D D Envelope small membrane protein
Length=31
Score = 56.2 bits (134), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/31 (100%), Positives = 31/31 (100%), Gaps = 0/31 (0%)
Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALR 38
ETGTLIVNSVLLFLAFVVFLLVTLAILTALR
Sbjct 1 ETGTLIVNSVLLFLAFVVFLLVTLAILTALR 31
>8suz_A A Envelope small membrane protein
Length=31
Score = 56.2 bits (134), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/31 (100%), Positives = 31/31 (100%), Gaps = 0/31 (0%)
Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALR 38
ETGTLIVNSVLLFLAFVVFLLVTLAILTALR
Sbjct 1 ETGTLIVNSVLLFLAFVVFLLVTLAILTALR 31
>7k3g_E E Envelope small membrane protein
Length=31
Score = 56.2 bits (134), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/31 (100%), Positives = 31/31 (100%), Gaps = 0/31 (0%)
Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALR 38
ETGTLIVNSVLLFLAFVVFLLVTLAILTALR
Sbjct 1 ETGTLIVNSVLLFLAFVVFLLVTLAILTALR 31
>7k3g_C C Envelope small membrane protein
Length=31
Score = 56.2 bits (134), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/31 (100%), Positives = 31/31 (100%), Gaps = 0/31 (0%)
Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALR 38
ETGTLIVNSVLLFLAFVVFLLVTLAILTALR
Sbjct 1 ETGTLIVNSVLLFLAFVVFLLVTLAILTALR 31
>8suz_E E Envelope small membrane protein
Length=31
Score = 56.2 bits (134), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/31 (100%), Positives = 31/31 (100%), Gaps = 0/31 (0%)
Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALR 38
ETGTLIVNSVLLFLAFVVFLLVTLAILTALR
Sbjct 1 ETGTLIVNSVLLFLAFVVFLLVTLAILTALR 31
>8suz_D D Envelope small membrane protein
Length=31
Score = 56.2 bits (134), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/31 (100%), Positives = 31/31 (100%), Gaps = 0/31 (0%)
Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALR 38
ETGTLIVNSVLLFLAFVVFLLVTLAILTALR
Sbjct 1 ETGTLIVNSVLLFLAFVVFLLVTLAILTALR 31
>8suz_C C Envelope small membrane protein
Length=31
Score = 56.2 bits (134), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/31 (100%), Positives = 31/31 (100%), Gaps = 0/31 (0%)
Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALR 38
ETGTLIVNSVLLFLAFVVFLLVTLAILTALR
Sbjct 1 ETGTLIVNSVLLFLAFVVFLLVTLAILTALR 31
>8suz_B B Envelope small membrane protein
Length=31
Score = 56.2 bits (134), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/31 (100%), Positives = 31/31 (100%), Gaps = 0/31 (0%)
Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALR 38
ETGTLIVNSVLLFLAFVVFLLVTLAILTALR
Sbjct 1 ETGTLIVNSVLLFLAFVVFLLVTLAILTALR 31
>8u1t_A A Envelope small membrane protein
Length=29
Score = 43.9 bits (102), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/26 (100%), Positives = 26/26 (100%), Gaps = 0/26 (0%)
Query 12 LIVNSVLLFLAFVVFLLVTLAILTAL 37
LIVNSVLLFLAFVVFLLVTLAILTAL
Sbjct 4 LIVNSVLLFLAFVVFLLVTLAILTAL 29
>8u1t_B B Envelope small membrane protein
Length=29
Score = 43.9 bits (102), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/26 (100%), Positives = 26/26 (100%), Gaps = 0/26 (0%)
Query 12 LIVNSVLLFLAFVVFLLVTLAILTAL 37
LIVNSVLLFLAFVVFLLVTLAILTAL
Sbjct 4 LIVNSVLLFLAFVVFLLVTLAILTAL 29
Lambda K H a alpha
0.331 0.142 0.407 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 6367781040
Database: unitmol_20240904.fasta
Posted date: Sep 5, 2024 12:15 PM
Number of letters in database: 251,418,593
Number of sequences in database: 870,205
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40