Contact Molecules for Homologous Proteins


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PID QueryLength Homolgous Sequence in PDB UniProt Query TITLE
5837 76 20 P59637(VEMP_SARS) RecName: Full=Envelope small membrane protein ; Short=E protein ; Short=sM protein ;
QUERYSEQ
MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYSRVKNLNSSEGVPDLLV
[BLAST file for PDB] (plain) (bar) (multiple alignment) [BLAST for UniProt: (plain) (bar) (multiple alignment) (PSSM file) ]
  [n]:site number of query sequence.  [a]:amino acid of query sequence.  [s]:predicted secondary structure.
  [e]:predicted exposed/buried.  [acc]:predicted relative accesssibility(%).  [pdb]:PDB code of homologous structure.
  [contact_mols]:predicted binding molecules  [observed aa]:Observed amino acids among homologous sequences.  [feature table]:UniProt Feature Table
  [variant]:UniProt Human Variant.
n a s e acc pdb contact_mols observed aa feature table variant
1M----
M
TOPO_DOM /note="Virion surface" TOPO_DOM /note="Virion surface"
2Y----
LY
TOPO_DOM /note="Virion surface" TOPO_DOM /note="Virion surface"
3S----
PS
TOPO_DOM /note="Virion surface" TOPO_DOM /note="Virion surface"
4F----
F
TOPO_DOM /note="Virion surface" TOPO_DOM /note="Virion surface"
5V----
V
TOPO_DOM /note="Virion surface" TOPO_DOM /note="Virion surface"
6S----
SQH
TOPO_DOM /note="Virion surface" TOPO_DOM /note="Virion surface"
7E----
E
TOPO_DOM /note="Virion surface" TOPO_DOM /note="Virion surface"
8E e 84.9 2mm4_A homo
EQDR
TOPO_DOM /note="Virion surface" TOPO_DOM /note="Virion surface"
9T e108.4 2mm4_A
TI
TOPO_DOM /note="Virion surface" TOPO_DOM /note="Virion surface"
10GSe 58.3 2mm4_A
GA
TOPO_DOM /note="Virion surface" TOPO_DOM /note="Virion surface"
11T e 23.4 2mm4_A homo
TWAL
TOPO_DOM /note="Virion surface" TOPO_DOM /note="Virion surface"
12L e 99.4 2mm4_A homo
FLYI
TOPO_DOM /note="Virion surface" TOPO_DOM /note="Virion surface"
13ISe 88.9 2mm4_A homo
IV
TOPO_DOM /note="Virion surface" TOPO_DOM /note="Virion surface"
14VHe 50.7 2mm4_A homo
VG
TOPO_DOM /note="Virion surface" TOPO_DOM /note="Virion surface"
15NHe 67.3 2mm4_A homo
NQ
TOPO_DOM /note="Virion surface" TOPO_DOM /note="Virion surface"
16SHe 44.5 2mm4_A homo
FSI
TOPO_DOM /note="Virion surface" TOPO_DOM /note="Virion surface"
17VHe 54.7 2mm4_A homo
FV
TRANSMEM /note="Helical" TRANSMEM /note="Helical"
18LHe 86.0 2mm4_A homo
ILF
TRANSMEM /note="Helical" TRANSMEM /note="Helical"
19LHe 74.7 2mm4_A homo
LF
TRANSMEM /note="Helical" TRANSMEM /note="Helical"
20FHe 58.4 2mm4_A homo
FTVS
TRANSMEM /note="Helical" TRANSMEM /note="Helical"
21LHe 68.0 2mm4_A homo
LVF
TRANSMEM /note="Helical" TRANSMEM /note="Helical"
22AHe 36.6 2mm4_A homo
VAS
TRANSMEM /note="Helical" TRANSMEM /note="Helical"
23FHe 36.8 2mm4_A homo
CF
TRANSMEM /note="Helical" TRANSMEM /note="Helical"
24VHe 36.7 2mm4_A homo
VA
TRANSMEM /note="Helical" TRANSMEM /note="Helical"
25VHe 62.7 2mm4_A homo
IV
TRANSMEM /note="Helical" TRANSMEM /note="Helical"
26FHe 61.7 2mm4_A homo
FT
TRANSMEM /note="Helical" TRANSMEM /note="Helical"
27LHe 53.9 2mm4_A homo
L
TRANSMEM /note="Helical" TRANSMEM /note="Helical"
28LHe 69.1 2mm4_A homo
LIV
TRANSMEM /note="Helical" TRANSMEM /note="Helical"
29VHe 83.3 2mm4_A homo
VF
TRANSMEM /note="Helical" TRANSMEM /note="Helical"
30THe 43.5 2mm4_A
CTV
TRANSMEM /note="Helical" TRANSMEM /note="Helical"
31LHe 66.9 2mm4_A homo
LVM
TRANSMEM /note="Helical" TRANSMEM /note="Helical"
32AHe 57.1 2mm4_A
A
TRANSMEM /note="Helical" TRANSMEM /note="Helical"
33IHe 77.2 2mm4_A homo
ILFV
TRANSMEM /note="Helical" TRANSMEM /note="Helical"
34LHe 52.8 2mm4_A
L
TRANSMEM /note="Helical" TRANSMEM /note="Helical"
35THe 34.4 2mm4_A homo
TA
TRANSMEM /note="Helical" TRANSMEM /note="Helical"
36AHe 47.3 2mm4_A homo
AT
TRANSMEM /note="Helical" TRANSMEM /note="Helical"
37LHe 82.6 2mm4_A homo
ILT
TRANSMEM /note="Helical" TRANSMEM /note="Helical"
38RHe 58.9 2mm4_A homo
RK
TOPO_DOM /note="Intravirion" TOPO_DOM /note="Intravirion"
39LHe 28.1 2mm4_A
L
TOPO_DOM /note="Intravirion" TOPO_DOM /note="Intravirion"
40CHe 41.1 2mm4_A
C
TOPO_DOM /note="Intravirion" TOPO_DOM /note="Intravirion"
41AHe 60.7 2mm4_A
VAI
TOPO_DOM /note="Intravirion" TOPO_DOM /note="Intravirion"
42YHe 37.4 2mm4_A
QY
TOPO_DOM /note="Intravirion" TOPO_DOM /note="Intravirion"
43CTe 36.6 2mm4_A
CI
TOPO_DOM /note="Intravirion" TOPO_DOM /note="Intravirion"
44CTe 87.5 2mm4_A
CMVA
TOPO_DOM /note="Intravirion" TOPO_DOM /note="Intravirion"
45NTe 84.8 2mm4_A
NSGT
TOPO_DOM /note="Intravirion" TOPO_DOM /note="Intravirion"
46ISe 92.4 2mm4_A
GIF
TOPO_DOM /note="Intravirion" TOPO_DOM /note="Intravirion"
47V e 61.3 2mm4_A homo
VCF
TOPO_DOM /note="Intravirion" TOPO_DOM /note="Intravirion"
48NSe 70.3 2mm4_A homo
NH
TOPO_DOM /note="Intravirion" TOPO_DOM /note="Intravirion"
49V e 58.0 2mm4_A homo
TVI
TOPO_DOM /note="Intravirion" TOPO_DOM /note="Intravirion"
50S b 3.9 2mm4_A
LSF
TOPO_DOM /note="Intravirion" TOPO_DOM /note="Intravirion"
51L e 78.1 2mm4_A
LIV
TOPO_DOM /note="Intravirion" TOPO_DOM /note="Intravirion"
52VSe 76.0 2mm4_A
VFI
TOPO_DOM /note="Intravirion" TOPO_DOM /note="Intravirion"
53KSe 62.7 2mm4_A
KSLQV
TOPO_DOM /note="Intravirion" TOPO_DOM /note="Intravirion"
54PTe 52.7 2mm4_A
P
TOPO_DOM /note="Intravirion" TOPO_DOM /note="Intravirion"
55TTb 17.5 2mm4_A
AST
TOPO_DOM /note="Intravirion" TOPO_DOM /note="Intravirion"
56VHe 66.7 2mm4_A
VAFL
TOPO_DOM /note="Intravirion" TOPO_DOM /note="Intravirion"
57YHe 53.0 2mm4_A homo
YH
TOPO_DOM /note="Intravirion" TOPO_DOM /note="Intravirion"
58VHe 52.0 2mm4_A
VIL
TOPO_DOM /note="Intravirion" TOPO_DOM /note="Intravirion"
59YHe 73.5 2mm4_A
Y
TOPO_DOM /note="Intravirion" TOPO_DOM /note="Intravirion"
60SHe 45.3 2mm4_A homo
NSG
TOPO_DOM /note="Intravirion" TOPO_DOM /note="Intravirion"
61RHe 74.7 2mm4_A homo
RT
TOPO_DOM /note="Intravirion" TOPO_DOM /note="Intravirion"
62VHe 78.0 2mm4_A
VGA
TOPO_DOM /note="Intravirion" TOPO_DOM /note="Intravirion"
63KHe 73.1 2mm4_A homo
KRA
TOPO_DOM /note="Intravirion" TOPO_DOM /note="Intravirion"
64NHe 78.2 2mm4_A homo
NQFY
TOPO_DOM /note="Intravirion" TOPO_DOM /note="Intravirion"
65L e119.7 2mm4_A homo
LQV
TOPO_DOM /note="Intravirion" TOPO_DOM /note="Intravirion"
66N----
NYDK
TOPO_DOM /note="Intravirion" TOPO_DOM /note="Intravirion"
67S----
SKF
TOPO_DOM /note="Intravirion" TOPO_DOM /note="Intravirion"
68S----
SKQ
TOPO_DOM /note="Intravirion" TOPO_DOM /note="Intravirion"
69E----
EPR
TOPO_DOM /note="Intravirion" TOPO_DOM /note="Intravirion"
70G e148.8 7ntj_D
GSPADEFIKLNQRTVY
TOPO_DOM /note="Intravirion" TOPO_DOM /note="Intravirion"
71V e114.0 7ntj_D
VHL
TOPO_DOM /note="Intravirion" TOPO_DOM /note="Intravirion"
72P e 85.3 7ntj_D
P
TOPO_DOM /note="Intravirion" TOPO_DOM /note="Intravirion"
73D e137.0 7ntj_B hetero MPP5_HUMAN
DP
MOTIF /note="PDZ-binding; required for interaction with human PALS1" MUTAGEN /note="Missing: Abolishes interaction with PDZ domain of human PALS1; loss of accumulation in host perinuclear compartment." TOPO_DOM /note="Intravirion" MOTIF /note="PDZ-binding; required for interaction with human PALS1" MUTAGEN /note="Missing: Abolishes interaction with PDZ domain of human PALS1; loss of accumulation in host perinuclear compartment." TOPO_DOM /note="Intravirion"
74L e108.4 7ntj_B hetero MPP5_HUMAN
L
MOTIF /note="PDZ-binding; required for interaction with human PALS1" MUTAGEN /note="Missing: Abolishes interaction with PDZ domain of human PALS1; loss of accumulation in host perinuclear compartment." TOPO_DOM /note="Intravirion" MOTIF /note="PDZ-binding; required for interaction with human PALS1" MUTAGEN /note="Missing: Abolishes interaction with PDZ domain of human PALS1; loss of accumulation in host perinuclear compartment." TOPO_DOM /note="Intravirion"
75L e112.4 7ntj_B hetero MPP5_HUMAN
L
MOTIF /note="PDZ-binding; required for interaction with human PALS1" MUTAGEN /note="Missing: Abolishes interaction with PDZ domain of human PALS1; loss of accumulation in host perinuclear compartment." TOPO_DOM /note="Intravirion" MOTIF /note="PDZ-binding; required for interaction with human PALS1" MUTAGEN /note="Missing: Abolishes interaction with PDZ domain of human PALS1; loss of accumulation in host perinuclear compartment." TOPO_DOM /note="Intravirion"
76V e136.0 7ntj_B hetero MPP5_HUMAN
V
MOTIF /note="PDZ-binding; required for interaction with human PALS1" MUTAGEN /note="Missing: Abolishes interaction with PDZ domain of human PALS1; loss of accumulation in host perinuclear compartment." TOPO_DOM /note="Intravirion" MOTIF /note="PDZ-binding; required for interaction with human PALS1" MUTAGEN /note="Missing: Abolishes interaction with PDZ domain of human PALS1; loss of accumulation in host perinuclear compartment." TOPO_DOM /note="Intravirion"