Contact Molecules for Homologous Proteins | ||||
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seq_id(%): [0] [30] [40] [50] [60] [70] [80] [90] [95] [100] | [show] [download] [help] |
PID | QueryLength | Homolgous Sequence in PDB | UniProt Query | TITLE |
1731669 | 1170 | 82 | P20701(ITAL_HUMAN) | RecName: Full=Integrin alpha-L ;AltName: Full=CD11 antigen-like family member A;AltName: Full=Leukocyte adhesion glycoprotein LFA-1 alpha chain; Short=LFA-1A;AltName: Full=Leukocyte function-associated molecule 1 alpha chain;AltName: CD_antigen=CD11a;Flags: Precursor; |
QUERYSEQ |
MKDSCITVMAMALLSGFFFFAPASSYNLDVRGARSFSPPRAGRHFGYRVLQVGNGVIVGAPGEGNSTGSLYQCQSGTGHCLPVTLRGSNYTSKYLGMTLATDPTDGSILACDPGLSRTCDQNTYLSGLCYLFRQNLQGPMLQGRPGFQEC IKGNVDLVFLFDGSMSLQPDEFQKILDFMKDVMKKLSNTSYQFAAVQFSTSYKTEFDFSDYVKRKDPDALLKHVKHMLLLTNTFGAINYVATEVFREELGARPDATKVLIIITDGEATDSGNIDAAKDIIRYIIGIGKHFQTKESQETLH KFASKPASEFVKILDTFEKLKDLFTELQKKIYVIEGTSKQDLTSFNMELSSSGISADLSRGHAVVGAVGAKDWAGGFLDLKADLQDDTFIGNEPLTPEVRAGYLGYTVTWLPSRQKTSLLASGAPRYQHMGRVLLFQEPQGGGHWSQVQT IHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGEQRGGRVFIYQRRQLGFEEVSELQGDPGYPLGRFGEAITALTDINGDGLVDVAVGAPLEEQGAVYIFNGRHGGLSPQPSQRIEGTQVLSGIQWFGRSIHGVKDLEGDGLADVA VGAESQMIVLSSRPVVDMVTLMSFSPAEIPVHEVECSYSTSNKMKEGVNITICFQIKSLIPQFQGRLVANLTYTLQLDGHRTRRRGLFPGGRHELRRNIAVTTSMSCTDFSFHFPVCVQDLISPINVSLNFSLWEEEGTPRDQRAQGKDI PPILRPSLHSETWEIPFEKNCGEDKKCEANLRVSFSPARSRALRLTAFASLSVELSLSNLEEDAYWVQLDLHFPPGLSFRKVEMLKPHSQIPVSCEELPEESRLLSRALSCNVSSPIFKAGHSVALQMMFNTLVNSSWGDSVELHANVTC NNEDSDLLEDNSATTIIPILYPINILIQDQEDSTLYVSFTPKGPKIHQVKHMYQVRIQPSIHDHNIPTLEAVVGVPQPPSEGPITHQWSVQMEPPVPCHYEDLERLPDAAEPCLPGALFRCPVVFRQEILVQVIGTLELVGEIEASSMFS LCSSLSISFNSSKHFHLYGSNASLAQVVMKVDVVYEKQMLYLYVLSGIGGLLLLLLIFIVLYKVGFFKRNLKEKMEAGRGVPNGIPAEDSEQLASGQEAGDPGCLKPLHEKDSESGGGKD |
All | LB/B (likely benign or benign) | ||
Number of sites | 1170 | 4 | |
Buired or Exposed | Buried | 48.0 (%) [325] | 0.0 (%) [0] |
Exposed | 52.0 (%) [352] | 100.0 (%) [2] | |
Ave relacc | 28.6 % | 52.2 % | |
SD relacc | 27.23 % | 10.72 % | |
Contact Mol | hetero | 6.6 (%) [77] | 0.0 (%) [0] |
nucleotide | 0.0 (%) [0] | 0.0 (%) [0] | |
compound | 3.2 (%) [37] | 25.0 (%) [1] | |
metal | 2.5 (%) [29] | 25.0 (%) [1] | |
otherpoly | 0.0 (%) [0] | 0.0 (%) [0] | |
homo | 6.2 (%) [73] | 0.0 (%) [0] | |
precipitant | 2.1 (%) [24] | 0.0 (%) [0] | |
Number of variants | 4 | 4 | |
N_Freq(AAvariant)==0 % | 50.0 % [2] | ||
N_Freq(AAvariant)>0 % | 50.0 % [2] | ||
Ave Freq(AAvariant) | 1.0 % | ||
SD Freq(AAvariant) | 1.00 % |
4 sites | 144,214,746,791 |
[n]:site number of query sequence. [a]:amino acid of query sequence. [s]:predicted secondary structure. [e]:predicted exposed/buried. [acc]:predicted relative accesssibility(%). [pdb]:PDB code of homologous structure. [contact_mols]:predicted binding molecules [observed aa]:Observed amino acids among homologous sequences. [feature table]:UniProt Feature Table [variant]:UniProt Human Variant.
n | a | s | e | acc | pdb | contact_mols | observed aa | feature table | variant |
144 | R | e | 41.5 | 5e6u_A | compound NAG | RPGIKLQADSVCFH |
TOPO_DOM /note="Extracellular" TOPO_DOM /note="Extracellular" | R->H:(2.0 %):LB/B - dbSNP:rs3416670 | |
214 | R | T | e | 62.9 | 5e6u_A | metal MG | KQRGSTAVINEPH |
DOMAIN /note="VWFA" TOPO_DOM /note="Extracellular" DOMAIN /note="VWFA" TOPO_DOM /note="Extracellular" | R->W:(0.0 %):LB/B - dbSNP:rs1064524 |
746 | Q | - | - | - | - | RLSEQADTFPVGIKNWCHMY |
TOPO_DOM /note="Extracellular" DISORDER predicted by DISOPRED TOPO_DOM /note="Extracellular" | Q->K:(2.0 %):LB/B - dbSNP:rs3483894 | |
791 | R | - | - | - | - | KQSDPILNRCEGAV |
TOPO_DOM /note="Extracellular" TOPO_DOM /note="Extracellular" | R->T:(0.0 %):LB/B - dbSNP:rs2230433 |