Contact Molecules for Homologous Proteins | ||||
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seq_id(%): [0] [30] [40] [50] [60] [70] [80] [90] [95] [100] | [show] [download] [help] |
PID | QueryLength | Homolgous Sequence in PDB | UniProt Query | TITLE |
2931865 | 365 | 1500 | P04439(HLAA_HUMAN) | RecName: Full=HLA class I histocompatibility antigen, A alpha chain;AltName: Full=Human leukocyte antigen A; Short=HLA-A;Flags: Precursor; |
QUERYSEQ |
MAVMAPRTLLLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDQETRNVKAQSQTDRVDLGTLRGYYNQSEAGSHTIQIMYGCDVGSDGRFLRGYRQDAYDGKDYIAL NEDLRSWTAADMAAQITKRKWEAAHEAEQLRAYLDGTCVEWLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEL SSQPTIPIVGIIAGLVLLGAVITGAVVAAVMWRRKSSDRKGGSYTQAASSDSAQGSDVSLTACKV |
All | LB/B (likely benign or benign) | ||
Number of sites | 365 | 70 | |
Buired or Exposed | Buried | 37.5 (%) [105] | 32.7 (%) [17] |
Exposed | 62.5 (%) [175] | 67.3 (%) [35] | |
Ave relacc | 33.6 % | 34.7 % | |
SD relacc | 26.52 % | 22.78 % | |
Contact Mol | hetero | 57.8 (%) [211] | 64.3 (%) [45] |
nucleotide | 0.0 (%) [0] | 0.0 (%) [0] | |
compound | 23.3 (%) [85] | 42.9 (%) [30] | |
metal | 54.8 (%) [200] | 55.7 (%) [39] | |
otherpoly | 3.3 (%) [12] | 1.4 (%) [1] | |
homo | 33.2 (%) [121] | 44.3 (%) [31] | |
precipitant | 72.1 (%) [263] | 72.9 (%) [51] | |
Number of variants | 92 | 92 | |
N_Freq(AAvariant)==0 % | 4.3 % [4] | ||
N_Freq(AAvariant)>0 % | 95.7 % [88] | ||
Ave Freq(AAvariant) | 8.9 % | ||
SD Freq(AAvariant) | 8.43 % |
70 sites | 3,5,10,14,23,33,41,55,59,67,68,80,86,87,89,90,91,94,97,98,100,101,114,119,121,123,129,131,133,138,140,151,166,168,169,173,174,175,176,180,182,185,187,190,191,195,208,210,217,218,231,269,270,277,279,292,300,306,307,312,318,321,322,323,331,334,335,338,345,358 |
[n]:site number of query sequence. [a]:amino acid of query sequence. [s]:predicted secondary structure. [e]:predicted exposed/buried. [acc]:predicted relative accesssibility(%). [pdb]:PDB code of homologous structure. [contact_mols]:predicted binding molecules [observed aa]:Observed amino acids among homologous sequences. [feature table]:UniProt Feature Table [variant]:UniProt Human Variant.