Contact Molecules for Homologous Proteins | ||||
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seq_id(%): [0] [30] [40] [50] [60] [70] [80] [90] [95] [100] | ![]() [show] [download] [help] |
PID | QueryLength | Homolgous Sequence in PDB | UniProt Query | TITLE |
2711687 | 385 | 27 | P35613(BASI_HUMAN) | RecName: Full=Basigin ;AltName: Full=5F7;AltName: Full=Collagenase stimulatory factor;AltName: Full=Extracellular matrix metalloproteinase inducer; Short=EMMPRIN;AltName: Full=Hepatoma-associated antigen ; Short=HAb18G ;AltName: Full=Leukocyte activation antigen M6;AltName: Full=OK blood group antigen;AltName: Full=Tumor cell-derived collagenase stimulatory factor; Short=TCSF;AltName: CD_antigen=CD147;Flags: Precursor; |
QUERYSEQ |
MAAALFVLLGFALLGTHGASGAAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDTCSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWVRAQAVVLVLEPGTVFTTVEDLG SKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKTEFKVDSDDQWGEYSCVFLPEPMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYR CNGTSSKGSDQAIITLRVRSHLAALWPFLGIVAEVLVLVTIIFIYEKRRKPEDVLDDDDAGSAPLKSSGQHQNDKGKNVRQRNSS |
All | LB/B (likely benign or benign) | ||
Number of sites | 385 | 8 | |
Buired or Exposed | Buried | 23.3 (%) [77] | 16.7 (%) [1] |
Exposed | 76.7 (%) [254] | 83.3 (%) [5] | |
Ave relacc | 38.3 % | 43.9 % | |
SD relacc | 23.09 % | 17.15 % | |
Contact Mol | hetero | 22.1 (%) [85] | 25.0 (%) [2] |
nucleotide | 0.0 (%) [0] | 0.0 (%) [0] | |
compound | 0.0 (%) [0] | 0.0 (%) [0] | |
metal | 1.0 (%) [4] | 0.0 (%) [0] | |
otherpoly | 0.0 (%) [0] | 0.0 (%) [0] | |
homo | 21.0 (%) [81] | 50.0 (%) [4] | |
precipitant | 0.5 (%) [2] | 0.0 (%) [0] | |
Number of variants | 8 | 8 | |
N_Freq(AAvariant)==0 % | 12.5 % [1] | ||
N_Freq(AAvariant)>0 % | 87.5 % [7] | ||
Ave Freq(AAvariant) | 7.5 % | ||
SD Freq(AAvariant) | 7.86 % |
8 sites | 13,16,26,152,176,206,208,269 |
[n]:site number of query sequence. [a]:amino acid of query sequence. [s]:predicted secondary structure. [e]:predicted exposed/buried. [acc]:predicted relative accesssibility(%). [pdb]:PDB code of homologous structure. [contact_mols]:predicted binding molecules [observed aa]:Observed amino acids among homologous sequences. [feature table]:UniProt Feature Table [variant]:UniProt Human Variant.
n | a | s | e | acc | pdb | contact_mols | observed aa | feature table | variant |
![]() | L | - | - | - | - | LVFMA |
SIGNAL SIGNAL DISORDER predicted by DISOPRED | L->V:(25.0 %):LB/B - dbSNP:rs2018506 | |
![]() | T | - | - | - | - | STAVYQGR |
SIGNAL SIGNAL DISORDER predicted by DISOPRED | T->A:(15.0 %):LB/B - dbSNP:rs1155190 | |
![]() | V | E | e | 56.7 | ![]() |
homo | AEILPRTVYDGKS |
V->F:(0.0 %):LB/B - dbSNP:rs1448246 | |
![]() | K | E | e | 21.7 | ![]() |
hetero | TSPAKREDQMNVLW |
DOMAIN /note="Ig-like C2-type" TOPO_DOM /note="Extracellular" DOMAIN /note="Ig-like C2-type" TOPO_DOM /note="Extracellular" | K->N:(4.0 %):LB/B - dbSNP:rs14704 |
![]() | V | E | e | 59.3 | ![]() |
hetero homo | SVRAKQELTFIGNPYM |
DOMAIN /note="Ig-like C2-type" TOPO_DOM /note="Extracellular" DOMAIN /note="Ig-like C2-type" TOPO_DOM /note="Extracellular" | V->L:(6.0 %):LB/B - dbSNP:rs2229662 |
![]() | L | S | b | 19.1 | ![]() |
homo | LAVRTISDEKYGMNP |
DOMAIN /note="Ig-like C2-type" TOPO_DOM /note="Extracellular" DOMAIN /note="Ig-like C2-type" TOPO_DOM /note="Extracellular" | L->P:(1.0 %):LB/B - dbSNP:rs5591114 |
![]() | E | T | e | 47.2 | ![]() |
homo | ENADPSKRHLQTGIV |
DOMAIN /note="Ig-like C2-type" TOPO_DOM /note="Extracellular" DOMAIN /note="Ig-like C2-type" TOPO_DOM /note="Extracellular" | E->K:(5.0 %):LB/B - dbSNP:rs1048946 |
![]() | G | T | e | 59.5 | ![]() |
GSPDKNHAVLFRTEIQ |
DOMAIN /note="Ig-like V-type" TOPO_DOM /note="Extracellular" DOMAIN /note="Ig-like V-type" TOPO_DOM /note="Extracellular" | G->V:(4.0 %):LB/B - dbSNP:rs1803203 |