Contact Molecules for Homologous Proteins | ||||
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seq_id(%): [0] [30] [40] [50] [60] [70] [80] [90] [95] [100] | [show] [download] [help] |
PID | QueryLength | Homolgous Sequence in PDB | UniProt Query | TITLE |
2711687 | 385 | 54 | P35613(BASI_HUMAN) | RecName: Full=Basigin ;AltName: Full=5F7;AltName: Full=Collagenase stimulatory factor;AltName: Full=Extracellular matrix metalloproteinase inducer; Short=EMMPRIN;AltName: Full=Hepatoma-associated antigen ; Short=HAb18G ;AltName: Full=Leukocyte activation antigen M6;AltName: Full=OK blood group antigen;AltName: Full=Tumor cell-derived collagenase stimulatory factor; Short=TCSF;AltName: CD_antigen=CD147;Flags: Precursor; |
QUERYSEQ |
MAAALFVLLGFALLGTHGASGAAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDTCSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWVRAQAVVLVLEPGTVFTTVEDLG SKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKTEFKVDSDDQWGEYSCVFLPEPMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYR CNGTSSKGSDQAIITLRVRSHLAALWPFLGIVAEVLVLVTIIFIYEKRRKPEDVLDDDDAGSAPLKSSGQHQNDKGKNVRQRNSS |
All | LB/B (likely benign or benign) | ||
Number of sites | 385 | 8 | |
Buired or Exposed | Buried | 22.9 (%) [78] | 14.3 (%) [1] |
Exposed | 77.1 (%) [262] | 85.7 (%) [6] | |
Ave relacc | 39.2 % | 46.4 % | |
SD relacc | 24.02 % | 16.96 % | |
Contact Mol | hetero | 29.9 (%) [115] | 37.5 (%) [3] |
nucleotide | 0.0 (%) [0] | 0.0 (%) [0] | |
compound | 5.7 (%) [22] | 0.0 (%) [0] | |
metal | 1.0 (%) [4] | 0.0 (%) [0] | |
otherpoly | 5.7 (%) [22] | 0.0 (%) [0] | |
homo | 26.2 (%) [101] | 50.0 (%) [4] | |
precipitant | 3.4 (%) [13] | 0.0 (%) [0] | |
Number of variants | 8 | 8 | |
N_Freq(AAvariant)==0 % | 12.5 % [1] | ||
N_Freq(AAvariant)>0 % | 87.5 % [7] | ||
Ave Freq(AAvariant) | 7.5 % | ||
SD Freq(AAvariant) | 7.86 % |
8 sites | 13,16,26,152,176,206,208,269 |
[n]:site number of query sequence. [a]:amino acid of query sequence. [s]:predicted secondary structure. [e]:predicted exposed/buried. [acc]:predicted relative accesssibility(%). [pdb]:PDB code of homologous structure. [contact_mols]:predicted binding molecules [observed aa]:Observed amino acids among homologous sequences. [feature table]:UniProt Feature Table [variant]:UniProt Human Variant.
n | a | s | e | acc | pdb | contact_mols | observed aa | feature table | variant |
13 | L | - | - | - | - | LVFMA |
SIGNAL SIGNAL DISORDER predicted by DISOPRED | L->V:(25.0 %):LB/B - dbSNP:rs2018506 | |
16 | T | e | 60.9 | 2edj_A | STAVYQGR |
SIGNAL SIGNAL DISORDER predicted by DISOPRED | T->A:(15.0 %):LB/B - dbSNP:rs1155190 | ||
26 | V | E | e | 56.7 | 3qr2_A | homo | AEILPRTVYDGKS |
V->F:(0.0 %):LB/B - dbSNP:rs1448246 | |
152 | K | E | e | 21.7 | 7da5_B | hetero | TSPAKREDQMNVLW |
DOMAIN /note="Ig-like C2-type" TOPO_DOM /note="Extracellular" DOMAIN /note="Ig-like C2-type" TOPO_DOM /note="Extracellular" | K->N:(4.0 %):LB/B - dbSNP:rs14704 |
176 | V | E | e | 59.3 | 7da5_B | hetero homo | SVRAKQELTFIGNPYM |
DOMAIN /note="Ig-like C2-type" TOPO_DOM /note="Extracellular" DOMAIN /note="Ig-like C2-type" TOPO_DOM /note="Extracellular" | V->L:(6.0 %):LB/B - dbSNP:rs2229662 |
206 | L | S | b | 19.1 | 7da5_B | homo | LAVRTISDEKYGMNP |
DOMAIN /note="Ig-like C2-type" TOPO_DOM /note="Extracellular" DOMAIN /note="Ig-like C2-type" TOPO_DOM /note="Extracellular" | L->P:(1.0 %):LB/B - dbSNP:rs5591114 |
208 | E | T | e | 47.2 | 7da5_B | homo | ENADPSKRHLQTGIV |
DOMAIN /note="Ig-like C2-type" TOPO_DOM /note="Extracellular" DOMAIN /note="Ig-like C2-type" TOPO_DOM /note="Extracellular" | E->K:(5.0 %):LB/B - dbSNP:rs1048946 |
269 | G | T | e | 59.5 | 7da5_B | hetero | GSPDKNHAVLFRTEIQ |
DOMAIN /note="Ig-like V-type" TOPO_DOM /note="Extracellular" DOMAIN /note="Ig-like V-type" TOPO_DOM /note="Extracellular" | G->V:(4.0 %):LB/B - dbSNP:rs1803203 |