Contact Molecules for Homologous Proteins | ||||
[Summary Bars] |
[Full Bars] |
|
[Back to Search Page] |
[Back to HOMCOS] |
[SupCon3D] |
[help] |
seq_id(%): [0] [30] [40] [50] [60] [70] [80] [90] [95] [100] | [show] [download] [help] |
PID | QueryLength | Homolgous Sequence in PDB | UniProt Query | TITLE |
2622207 | 358 | 91 | P13747(HLAE_HUMAN) | RecName: Full=HLA class I histocompatibility antigen, alpha chain E;AltName: Full=MHC class I antigen E;Contains: RecName: Full=Soluble HLA class I histocompatibility antigen, alpha chain E; Short=sHLA-E ;Flags: Precursor; |
QUERYSEQ |
MVDGTLLLLLSEALALTQTWAGSHSLKYFHTSVSRPGRGEPRFISVGYVDDTQFVRFDNDAASPRMVPRAPWMEQEGSEYWDRETRSARDTAQIFRVNLRTLRGYYNQSEAGSHTLQWMHGCELGPDGRFLRGYEQFAYDGKDYLTLNED LRSWTAVDTAAQISEQKSNDASEAEHQRAYLEDTCVEWLHKYLEKGKETLLHLEPPKTHVTHHPISDHEATLRCWALGFYPAEITLTWQQDGEGHTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPVTLRWKPASQ PTIPIVGIIAGLVLLGSVVSGAVVAAVIWRKKSSGGKGGSYSKAEWSDSAQGSESHSL |
All | LB/B (likely benign or benign) | ||
Number of sites | 358 | 3 | |
Buired or Exposed | Buried | 37.3 (%) [103] | 33.3 (%) [1] |
Exposed | 62.7 (%) [173] | 66.7 (%) [2] | |
Ave relacc | 32.9 % | 24.9 % | |
SD relacc | 25.70 % | 5.93 % | |
Contact Mol | hetero | 36.0 (%) [129] | 66.7 (%) [2] |
nucleotide | 0.0 (%) [0] | 0.0 (%) [0] | |
compound | 0.0 (%) [0] | 0.0 (%) [0] | |
metal | 2.8 (%) [10] | 0.0 (%) [0] | |
otherpoly | 0.0 (%) [0] | 0.0 (%) [0] | |
homo | 13.1 (%) [47] | 0.0 (%) [0] | |
precipitant | 34.6 (%) [124] | 66.7 (%) [2] | |
Number of variants | 3 | 3 | |
N_Freq(AAvariant)==0 % | 33.3 % [1] | ||
N_Freq(AAvariant)>0 % | 66.7 % [2] | ||
Ave Freq(AAvariant) | 0.7 % | ||
SD Freq(AAvariant) | 0.47 % |
3 sites | 98,128,178 |
[n]:site number of query sequence. [a]:amino acid of query sequence. [s]:predicted secondary structure. [e]:predicted exposed/buried. [acc]:predicted relative accesssibility(%). [pdb]:PDB code of homologous structure. [contact_mols]:predicted binding molecules [observed aa]:Observed amino acids among homologous sequences. [feature table]:UniProt Feature Table [variant]:UniProt Human Variant.
n | a | s | e | acc | pdb | contact_mols | observed aa | feature table | variant |
98 | N | H | e | 28.5 | 7p4b_G | hetero HLAG_HUMAN INHA_MYCTU RASN_HUMAN PPSB_MYCTU ESXH_MYCTU Q0QI92_HCMV 1C07_HUMAN D9J353_9INFA B6S6I4_9HIV1 precipitant | DENASGTYQMIKLPRV |
BINDING /ligand="a peptide antigen" /ligand_id="ChEBI:CHEBI:166823" /ligand_label="1" /ligand_note="pathogen-derived peptide antigen" ECO:0007744|PDB:7P49, ECO:0007744|PDB:7P4B" BINDING /ligand="a peptide antigen" /ligand_id="ChEBI:CHEBI:166823" /ligand_label="2" /ligand_note="self-peptide antigen" REGION /note="Alpha-1" TOPO_DOM /note="Extracellular" BINDING /ligand="a peptide antigen" /ligand_id="ChEBI:CHEBI:166823" /ligand_label="1" /ligand_note="pathogen-derived peptide antigen" ECO:0007744|PDB:7P49, ECO:0007744|PDB:7P4B" BINDING /ligand="a peptide antigen" /ligand_id="ChEBI:CHEBI:166823" /ligand_label="2" /ligand_note="self-peptide antigen" REGION /note="Alpha-1" TOPO_DOM /note="Extracellular" | N->K:(1.0 %):LB/B - dbSNP:rs1059510 |
128 | G | S | e | 29.8 | 7p4b_G | GNTQSEW |
REGION /note="Alpha-2" TOPO_DOM /note="Extracellular" REGION /note="Alpha-2" TOPO_DOM /note="Extracellular" | G->R:(0.0 %):LB/B - dbSNP:rs1264457 | |
178 | R | H | b | 16.6 | 7p4b_G | hetero TVA4_HUMAN A0A075B6U7_HUMAN TRAR1_HUMAN TCA_HUMAN NKG2A_HUMAN TVB14_HUMAN TJB23_HUMAN TRBC2_HUMAN precipitant | RKIQAEHFLTVDGNY |
REGION /note="Alpha-2" TOPO_DOM /note="Extracellular" REGION /note="Alpha-2" TOPO_DOM /note="Extracellular" | R->G:(1.0 %):LB/B - dbSNP:rs4156231 |