Contact Molecules for Homologous Proteins


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PID QueryLength Homolgous Sequence in PDB UniProt Query TITLE
14157 529 16 P52292(IMA1_HUMAN) RecName: Full=Importin subunit alpha-1 ;AltName: Full=Karyopherin subunit alpha-2;AltName: Full=RAG cohort protein 1;AltName: Full=SRP1-alpha;
QUERYSEQ
MSTNENANTPAARLHRFKNKGKDSTEMRRRRIEVNVELRKAKKDDQMLKRRNVSSFPDDATSPLQENRNNQGTVNWSVDDIVKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPIQFESAWALTNIASG
TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVFRDLVIKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRLLHHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVK
LLGASELPIVTPALRAIGNIVTGTDEQTQVVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTKIILVILDAISNIFQA
AEKLGETEKLSIMIEECGGLDKIEALQNHENESVYKASLSLIEKYFSVEEEEDQNVVPETTSEGYTFQVQDGAPGTFNF
[BLAST file for PDB] (plain) (bar) (multiple alignment) [BLAST for UniProt: (plain) (bar) (multiple alignment) (PSSM file) ]

UniProt Feature Tables [P52292(IMA1_HUMAN)]

529
region name description
2-529 CHAIN /note="Importin subunit alpha-1" /id="PRO_0000120722"
2-60 DOMAIN /note="IBB"
71-111 REPEAT /note="ARM 1; truncated"
112-151 REPEAT /note="ARM 2"
152-193 REPEAT /note="ARM 3"
200-244 REPEAT /note="ARM 4"
246-282 REPEAT /note="ARM 5"
283-322 REPEAT /note="ARM 6"
325-364 REPEAT /note="ARM 7"
367-409 REPEAT /note="ARM 8"
410-456 REPEAT /note="ARM 9"
457-496 REPEAT /note="ARM 10; atypical"
1-27 REGION /note="Disordered"
43-72 REGION /note="Disordered"
142-238 REGION /note="NLS binding site (major)"
315-403 REGION /note="NLS binding site (minor)"
55-72 COMPBIAS /note="Polar residues"
1-529 DISORDER predicted by DISOPRED

MONOMER
529
pdb_id a1 identity[%]2 description
5h43 A 100.0 IMA1_HUMAN Importin subunit alpha-1
7cru B 100.0 IMA1_HUMAN Importin subunit alpha-1
1qgk B 100.0 IMA2_HUMAN PROTEIN (IMPORTIN ALPHA-2 SUBUNIT)
1.a1:asym_id for the homologue. 2.identity[%]2:sequence identity between the query and the homologue.
HETERO
529 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
1qgk[3] A IMB1_HUMAN PROTEIN (IMPORTIN BETA SUBUNIT)[876 aa] B 100.0
/100.0
25
/25
IMA2_HUMAN PROTEIN (IMPORTIN ALPHA-2 SUBUNIT)
3fex[2] A NCBP1_HUMAN Nuclear cap-binding protein subunit 1[756 aa] C 100.0
/100.0
39
/39
IMA2_HUMAN Importin subunit alpha-2
4wv6[1] B TAF8_HUMAN Transcription initiation factor TFIID subunit 8[9 .. A 100.0
/100.0
20
/20
IMA1_HUMAN Importin subunit alpha-1
4wv6[1] C TAF8_HUMAN Transcription initiation factor TFIID subunit 8[3 .. A 100.0
/100.0
8
/8
IMA1_HUMAN Importin subunit alpha-1
5h43[1] B KAT8_HUMAN Histone acetyltransferase KAT8[10 aa] A 100.0
/100.0
21
/21
IMA1_HUMAN Importin subunit alpha-1
5h43[1] C KAT8_HUMAN Histone acetyltransferase KAT8[15 aa] A 100.0
/100.0
30
/30
IMA1_HUMAN Importin subunit alpha-1
7cru[2] A HNRPK_HUMAN Heterogeneous nuclear ribonucleoprotein K[20 aa] B 100.0
/100.0
44
/44
IMA1_HUMAN Importin subunit alpha-1
7n8j[1] B BIMAX2[25 aa] A 100.0
/100.0
57
/57
IMA1_HUMAN Importin subunit alpha-1
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
METAL
529 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
8fzk[1] F MG
MAGNESIUM ION[1 atoms]
C 100.0
/100.0
4
/4
IMA1_HUMAN Importin subunit alpha-1
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
HOMO
529 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
8fzk[4] B IMA1_HUMAN Importin subunit alpha-1[422 aa] A 100.0
/100.0
42
/42
IMA1_HUMAN Importin subunit alpha-1
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
PRECIPITANT
529 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
3wpt[2] C PEG
DI(HYDROXYETHYL)ETHER[7 atoms]
A 100.0
/100.0
2
/2
IMA1_HUMAN Importin subunit alpha-1
3wpt[1] D PEG
DI(HYDROXYETHYL)ETHER[7 atoms]
A 100.0
/100.0
3
/3
IMA1_HUMAN Importin subunit alpha-1
3wpt[1] E PEG
DI(HYDROXYETHYL)ETHER[7 atoms]
A 100.0
/100.0
5
/5
IMA1_HUMAN Importin subunit alpha-1
3wpt[1] F PEG
DI(HYDROXYETHYL)ETHER[7 atoms]
A 100.0
/100.0
1
/1
IMA1_HUMAN Importin subunit alpha-1
3wpt[1] G PEG
DI(HYDROXYETHYL)ETHER[7 atoms]
A 100.0
/100.0
1
/1
IMA1_HUMAN Importin subunit alpha-1
3wpt[1] H PEG
DI(HYDROXYETHYL)ETHER[7 atoms]
A 100.0
/100.0
6
/6
IMA1_HUMAN Importin subunit alpha-1
3wpt[1] I PEG
DI(HYDROXYETHYL)ETHER[7 atoms]
A 100.0
/100.0
1
/1
IMA1_HUMAN Importin subunit alpha-1
3wpt[1] J PEG
DI(HYDROXYETHYL)ETHER[7 atoms]
A 100.0
/100.0
3
/3
IMA1_HUMAN Importin subunit alpha-1
3wpt[2] K PEG
DI(HYDROXYETHYL)ETHER[7 atoms]
A 100.0
/100.0
3
/3
IMA1_HUMAN Importin subunit alpha-1
3wpt[1] L PEG
DI(HYDROXYETHYL)ETHER[7 atoms]
A 100.0
/100.0
2
/2
IMA1_HUMAN Importin subunit alpha-1
3wpt[2] M PEG
DI(HYDROXYETHYL)ETHER[7 atoms]
A 100.0
/100.0
4
/4
IMA1_HUMAN Importin subunit alpha-1
3wpt[1] P PEG
DI(HYDROXYETHYL)ETHER[7 atoms]
B 100.0
/100.0
3
/3
IMA1_HUMAN Importin subunit alpha-1
3wpt[1] R PEG
DI(HYDROXYETHYL)ETHER[7 atoms]
B 100.0
/100.0
3
/3
IMA1_HUMAN Importin subunit alpha-1
3wpt[1] S PEG
DI(HYDROXYETHYL)ETHER[7 atoms]
B 100.0
/100.0
3
/3
IMA1_HUMAN Importin subunit alpha-1
4wv6[3] D EDO
1,2-ETHANEDIOL[4 atoms]
A 100.0
/100.0
2
/2
IMA1_HUMAN Importin subunit alpha-1
4wv6[1] E EDO
1,2-ETHANEDIOL[4 atoms]
A 100.0
/100.0
2
/2
IMA1_HUMAN Importin subunit alpha-1
4wv6[1] F EDO
1,2-ETHANEDIOL[4 atoms]
A 100.0
/100.0
4
/4
IMA1_HUMAN Importin subunit alpha-1
4wv6[1] H EDO
1,2-ETHANEDIOL[4 atoms]
A 100.0
/100.0
5
/5
IMA1_HUMAN Importin subunit alpha-1
4wv6[1] I EDO
1,2-ETHANEDIOL[4 atoms]
A 100.0
/100.0
3
/3
IMA1_HUMAN Importin subunit alpha-1
4wv6[1] J EDO
1,2-ETHANEDIOL[4 atoms]
A 100.0
/100.0
4
/4
IMA1_HUMAN Importin subunit alpha-1
4wv6[1] K EDO
1,2-ETHANEDIOL[4 atoms]
A 100.0
/100.0
3
/3
IMA1_HUMAN Importin subunit alpha-1
4wv6[1] L EDO
1,2-ETHANEDIOL[4 atoms]
A 100.0
/100.0
3
/3
IMA1_HUMAN Importin subunit alpha-1
4wv6[1] M EDO
1,2-ETHANEDIOL[4 atoms]
A 100.0
/100.0
3
/3
IMA1_HUMAN Importin subunit alpha-1
4wv6[1] N EDO
1,2-ETHANEDIOL[4 atoms]
A 100.0
/100.0
2
/2
IMA1_HUMAN Importin subunit alpha-1
7cru[2] E ACT
ACETATE ION[4 atoms]
B 100.0
/100.0
2
/2
IMA1_HUMAN Importin subunit alpha-1
7cru[1] H ACT
ACETATE ION[4 atoms]
D 100.0
/100.0
4
/4
IMA1_HUMAN Importin subunit alpha-1
7cru[1] I ACT
ACETATE ION[4 atoms]
D 100.0
/100.0
4
/4
IMA1_HUMAN Importin subunit alpha-1
7cru[1] J ACT
ACETATE ION[4 atoms]
D 100.0
/100.0
1
/1
IMA1_HUMAN Importin subunit alpha-1
7cru[1] G GOL
GLYCEROL[6 atoms]
D 100.0
/100.0
4
/4
IMA1_HUMAN Importin subunit alpha-1
8fzk[1] E MES
2-(N-MORPHOLINO)-ETHANESULFONIC ACID[12 atoms]
A 100.0
/100.0
3
/3
IMA1_HUMAN Importin subunit alpha-1
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.