Contact Molecules for Homologous Proteins


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PID QueryLength Homolgous Sequence in PDB UniProt Query TITLE
2080 221 6 P59596(VME1_SARS) RecName: Full=Membrane protein ; Short=M protein ;AltName: Full=E1 glycoprotein ;AltName: Full=Matrix glycoprotein ;AltName: Full=Membrane glycoprotein ;
QUERYSEQ
MADNGTITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRGTIVTRPLMESELVIGAVIIRGHLRM
AGHSLGRCDIKDLPKEITVATSRTLSYYKLGASQRVGTDSGFAAYNRYRIGNYKLNTDHAGSNDNIALLVQ
[BLAST file for PDB] (plain) (bar) (multiple alignment) [BLAST for UniProt: (plain) (bar) (multiple alignment) (PSSM file) ]

UniProt Feature Tables [P59596(VME1_SARS)]

221
region name description
1-221 CHAIN /note="Membrane protein" /id="PRO_0000106035"
1-18 TOPO_DOM /note="Virion surface"
19-39 TRANSMEM /note="Helical"
40-49 TOPO_DOM /note="Intravirion"
50-70 TRANSMEM /note="Helical"
71-78 TOPO_DOM /note="Virion surface"
79-99 TRANSMEM /note="Helical"
100-221 TOPO_DOM /note="Intravirion"
1-6 DISORDER predicted by DISOPRED

MONOMER
221
pdb_id a1 identity[%]2 description
7vgr E 91.4 VME1_SARS2 Membrane protein
7vgr F 91.4 VME1_SARS2 Membrane protein
7vgs A 91.3 VME1_SARS2 Membrane protein
7vgs D 91.3 VME1_SARS2 Membrane protein
8ctk A 91.5 VME1_SARS2 Membrane protein
8ctk B 91.5 VME1_SARS2 Membrane protein
1.a1:asym_id for the homologue. 2.identity[%]2:sequence identity between the query and the homologue.
HETERO
221 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
7vgr A YN7756_1 Fab light chain[218 aa] E 100.0
/91.4
3
/3
VME1_SARS2 Membrane protein
7vgr C YN7756_1 Fab light chain[218 aa] E 100.0
/91.4
4
/4
VME1_SARS2 Membrane protein
7vgr A YN7756_1 Fab light chain[218 aa] F 100.0
/91.4
4
/4
VME1_SARS2 Membrane protein
7vgr C YN7756_1 Fab light chain[218 aa] F 100.0
/91.4
3
/3
VME1_SARS2 Membrane protein
7vgr B YN7756_1 Fab heavy chain[220 aa] E 88.9
/91.4
9
/9
VME1_SARS2 Membrane protein
7vgr D YN7756_1 Fab heavy chain[220 aa] E 50.0
/91.4
4
/4
VME1_SARS2 Membrane protein
7vgr B YN7756_1 Fab heavy chain[220 aa] F 50.0
/91.4
4
/4
VME1_SARS2 Membrane protein
7vgr D YN7756_1 Fab heavy chain[220 aa] F 88.9
/91.4
9
/9
VME1_SARS2 Membrane protein
7vgs B YN7717_9 Fab light chain[218 aa] A 88.9
/91.3
9
/9
VME1_SARS2 Membrane protein
7vgs E YN7717_9 Fab light chain[218 aa] A 66.7
/91.3
3
/3
VME1_SARS2 Membrane protein
7vgs B YN7717_9 Fab light chain[218 aa] D 66.7
/91.3
3
/3
VME1_SARS2 Membrane protein
7vgs E YN7717_9 Fab light chain[218 aa] D 88.9
/91.3
9
/9
VME1_SARS2 Membrane protein
7vgs C YN7717_9 Fab heavy chain[213 aa] A 100.0
/91.3
9
/9
VME1_SARS2 Membrane protein
7vgs F YN7717_9 Fab heavy chain[213 aa] D 100.0
/91.3
9
/9
VME1_SARS2 Membrane protein
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
HOMO
221 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
7vgr F VME1_SARS2 Membrane protein[198 aa] E 93.5
/91.4
46
/46
VME1_SARS2 Membrane protein
7vgr E VME1_SARS2 Membrane protein[198 aa] F 93.5
/91.4
46
/46
VME1_SARS2 Membrane protein
7vgs D VME1_SARS2 Membrane protein[196 aa] A 92.5
/91.3
40
/40
VME1_SARS2 Membrane protein
7vgs A VME1_SARS2 Membrane protein[196 aa] D 92.5
/91.3
40
/40
VME1_SARS2 Membrane protein
8ctk B VME1_SARS2 Membrane protein[188 aa] A 86.1
/91.5
36
/36
VME1_SARS2 Membrane protein
8ctk A VME1_SARS2 Membrane protein[188 aa] B 86.5
/91.5
37
/37
VME1_SARS2 Membrane protein
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.