Contact Molecules for Homologous Proteins


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PID QueryLength Homolgous Sequence in PDB UniProt Query TITLE
3652451 207 49 P51149(RAB7A_HUMAN) RecName: Full=Ras-related protein Rab-7a ; EC=3.6.5.2 ;
QUERYSEQ
MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIP
YFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKLDKNDRAKASAESCSC
[BLAST file for PDB] (plain) (bar) (multiple alignment) [BLAST for UniProt: (plain) (bar) (multiple alignment) (PSSM file) ]

UniProt Feature Tables [P51149(RAB7A_HUMAN)]

207
region name description
2-207 CHAIN /note="Ras-related protein Rab-7a" /id="PRO_0000121121"
15-22 BINDING /ligand="GTP" /ligand_id="ChEBI:CHEBI:37565" ECO:0000269|PubMed:20028791"
34-40 BINDING /ligand="GTP" /ligand_id="ChEBI:CHEBI:37565" ECO:0000269|PubMed:20028791"
63-67 BINDING /ligand="GTP" /ligand_id="ChEBI:CHEBI:37565" ECO:0000269|PubMed:20028791"
125-128 BINDING /ligand="GTP" /ligand_id="ChEBI:CHEBI:37565" ECO:0000269|PubMed:20028791"
156-157 BINDING /ligand="GTP" /ligand_id="ChEBI:CHEBI:37565" ECO:0000269|PubMed:20028791"
205-205 LIPID /note="S-geranylgeranyl cysteine"
207-207 LIPID /note="S-geranylgeranyl cysteine"
1-207 DISORDER predicted by DISOPRED

MONOMER
207
pdb_id a1 identity[%]2 description
1vg8 D 100.0 RAB7_RAT Ras-related protein Rab-7
1vg8 A 100.0 RAB7_RAT Ras-related protein Rab-7
1vg0 B 100.0 RAB7_RAT Ras-related protein Rab-7
1yhn A 99.5 RAB7_HUMAN Ras-related protein Rab-7
1vg8 B 100.0 RAB7_RAT Ras-related protein Rab-7
1vg8 C 100.0 RAB7_RAT Ras-related protein Rab-7
8zq3 A 99.4 RAB7A_HUMAN Ras-related protein Rab-7a
3law C 99.4 RAB7A_HUMAN Ras-related protein Rab-7a
3law A 99.4 RAB7A_HUMAN Ras-related protein Rab-7a
6wcw A 99.4 RAB7A_HUMAN Ras-related protein Rab-7a
3law D 99.4 RAB7A_HUMAN Ras-related protein Rab-7a
1t91 B 99.4 RAB7_HUMAN Ras-related protein Rab-7
1t91 A 99.4 RAB7_HUMAN Ras-related protein Rab-7
1t91 D 99.4 RAB7_HUMAN Ras-related protein Rab-7
1t91 C 99.4 RAB7_HUMAN Ras-related protein Rab-7
3law E 99.4 RAB7A_HUMAN Ras-related protein Rab-7a
3law B 99.4 RAB7A_HUMAN Ras-related protein Rab-7a
1vg9 H 100.0 RAB7_RAT Ras-related protein Rab-7
1vg9 D 100.0 RAB7_RAT Ras-related protein Rab-7
7f6j B 99.4 RAB7A_HUMAN Ras-related protein Rab-7a
5z2m B 99.4 RAB7A_MOUSE Ras-related protein Rab-7a
8kb8 D 99.4 RAB7A_HUMAN Ras-related protein Rab-7a
8kb8 C 99.4 RAB7A_HUMAN Ras-related protein Rab-7a
7f6j A 99.4 RAB7A_HUMAN Ras-related protein Rab-7a
1vg9 B 100.0 RAB7_RAT Ras-related protein Rab-7
6iyb C 99.4 RAB7A_HUMAN Ras-related protein Rab-7a
6iyb A 99.4 RAB7A_HUMAN Ras-related protein Rab-7a
1vg9 F 100.0 RAB7_RAT Ras-related protein Rab-7
5z2m C 99.4 RAB7A_MOUSE Ras-related protein Rab-7a
1vg1 A 100.0 RAB7_RAT Ras-related protein Rab-7
5ldd C 85.1 G0SGE1_CHATD Rab small monomeric GTPase-like protein
5ldd F 84.2 G0SGE1_CHATD Rab small monomeric GTPase-like protein
1ky2 A 70.1 YPT7_YEAST GTP-BINDING PROTEIN YPT7P
4phg A 68.4 YPT7_YEAST GTP-binding protein YPT7
4phh A 69.5 YPT7_YEAST GTP-binding protein YPT7
4phh B 69.3 YPT7_YEAST GTP-binding protein YPT7
4phh C 71.2 YPT7_YEAST GTP-binding protein YPT7
4phh D 69.6 YPT7_YEAST GTP-binding protein YPT7
1ky3 A 67.3 YPT7_YEAST GTP-BINDING PROTEIN YPT7P
1wms A 57.8 RAB9A_HUMAN Ras-related protein Rab-9A
4phf A 67.3 YPT7_YEAST GTP-binding protein YPT7
2ocb A 57.1 RAB9B_HUMAN Ras-related protein Rab-9B
1s8f B 57.1 RAB9A_CANFA Ras-related protein Rab-9A
7e1t B 56.5 RAB9A_HUMAN Ras-related protein Rab-9A
1yzl A 55.3 RAB9A_MOUSE Ras-related protein Rab-9A
1s8f A 58.2 RAB9A_CANFA Ras-related protein Rab-9A
7e1t A 56.9 RAB9A_HUMAN Ras-related protein Rab-9A
4qxa A 54.7 RAB9A_MOUSE Ras-related protein Rab-9A
1wms B 59.1 RAB9A_HUMAN Ras-related protein Rab-9A
1.a1:asym_id for the homologue. 2.identity[%]2:sequence identity between the query and the homologue.
HETERO
207 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
1vg0 A RAE1_RAT Rab proteins geranylgeranyltransferase component A.. B 100.0
/100.0
24
/24
RAB7_RAT Ras-related protein Rab-7
1vg9 A RAE1_RAT Rab proteins geranylgeranyltransferase component A.. B 100.0
/100.0
19
/19
RAB7_RAT Ras-related protein Rab-7
1vg9 C RAE1_RAT Rab proteins geranylgeranyltransferase component A.. D 100.0
/100.0
18
/18
RAB7_RAT Ras-related protein Rab-7
1vg9 E RAE1_RAT Rab proteins geranylgeranyltransferase component A.. F 100.0
/100.0
19
/19
RAB7_RAT Ras-related protein Rab-7
1vg9 G RAE1_RAT Rab proteins geranylgeranyltransferase component A.. H 100.0
/100.0
19
/19
RAB7_RAT Ras-related protein Rab-7
1yhn B RILP_HUMAN Rab interacting lysosomal protein[65 aa] A 100.0
/99.5
13
/13
RAB7_HUMAN Ras-related protein Rab-7
1yhn B RILP_HUMAN Rab interacting lysosomal protein[65 aa] A 100.0
/99.5
17
/17
RAB7_HUMAN Ras-related protein Rab-7
1yhn B RILP_HUMAN Rab interacting lysosomal protein[65 aa] A 100.0
/99.5
17
/17
RAB7_HUMAN Ras-related protein Rab-7
1yhn B RILP_HUMAN Rab interacting lysosomal protein[65 aa] A 100.0
/99.5
13
/13
RAB7_HUMAN Ras-related protein Rab-7
6iyb B OSBL1_HUMAN Oxysterol-binding protein-related protein 1[135 aa.. A 100.0
/99.4
12
/12
RAB7A_HUMAN Ras-related protein Rab-7a
6iyb D OSBL1_HUMAN Oxysterol-binding protein-related protein 1[135 aa.. C 100.0
/99.4
11
/11
RAB7A_HUMAN Ras-related protein Rab-7a
8zq3 B OSBL1_HUMAN Oxysterol-binding protein-related protein 1[152 aa.. A 100.0
/99.4
12
/12
RAB7A_HUMAN Ras-related protein Rab-7a
6wcw B RUBIC_HUMAN Run domain Beclin-1-interacting and cysteine-rich .. A 100.0
/99.4
18
/18
RAB7A_HUMAN Ras-related protein Rab-7a
7f6j C PDZD8_HUMAN PDZ domain-containing protein 8[106 aa] A 100.0
/99.4
26
/26
RAB7A_HUMAN Ras-related protein Rab-7a
7f6j C PDZD8_HUMAN PDZ domain-containing protein 8[106 aa] B 100.0
/99.4
19
/19
RAB7A_HUMAN Ras-related protein Rab-7a
8kb8 A WDR91_HUMAN WD repeat-containing protein 91[338 aa] C 100.0
/99.4
17
/17
RAB7A_HUMAN Ras-related protein Rab-7a
8kb8 B WDR91_HUMAN WD repeat-containing protein 91[336 aa] D 100.0
/99.4
15
/15
RAB7A_HUMAN Ras-related protein Rab-7a
5z2m A OSBL1_MOUSE Oxysterol-binding protein-related protein 1[137 aa.. B 88.9
/99.4
9
/9
RAB7A_MOUSE Ras-related protein Rab-7a
5z2m D OSBL1_MOUSE Oxysterol-binding protein-related protein 1[136 aa.. C 100.0
/99.4
7
/7
RAB7A_MOUSE Ras-related protein Rab-7a
5ldd A G0SGS3_CHATD Mon1[155 aa] C 95.0
/85.1
20
/20
G0SGE1_CHATD Rab small monomeric GTPase-like protein
5ldd D G0SGS3_CHATD Mon1[143 aa] F 95.2
/84.2
21
/21
G0SGE1_CHATD Rab small monomeric GTPase-like protein
5ldd B G0SD94_CHATD Ccz1[166 aa] C 100.0
/85.1
6
/6
G0SGE1_CHATD Rab small monomeric GTPase-like protein
5ldd E G0SD94_CHATD Ccz1[165 aa] F 100.0
/84.2
5
/5
G0SGE1_CHATD Rab small monomeric GTPase-like protein
7e1t C NDE1_HUMAN Isoform 2 of Nuclear distribution protein nudE hom.. A 40.0
/56.9
5
/5
RAB9A_HUMAN Ras-related protein Rab-9A
7e1t C NDE1_HUMAN Isoform 2 of Nuclear distribution protein nudE hom.. B 72.7
/56.5
11
/11
RAB9A_HUMAN Ras-related protein Rab-9A
7e1t D NDE1_HUMAN Isoform 2 of Nuclear distribution protein nudE hom.. A 72.7
/56.9
11
/11
RAB9A_HUMAN Ras-related protein Rab-9A
7e1t D NDE1_HUMAN Isoform 2 of Nuclear distribution protein nudE hom.. B 50.0
/56.5
6
/6
RAB9A_HUMAN Ras-related protein Rab-9A
4qxa B SGSM1_MOUSE Small G protein signaling modulator 1[147 aa] A 72.7
/54.7
11
/11
RAB9A_MOUSE Ras-related protein Rab-9A
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
COMPOUND
207 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
1ky3 C GDP
GUANOSINE-5'-DIPHOSPHATE[28 atoms]
A 93.3
/67.3
15
/15
YPT7_YEAST GTP-BINDING PROTEIN YPT7P
1s8f D GDP
GUANOSINE-5'-DIPHOSPHATE[28 atoms]
A 82.4
/58.2
17
/17
RAB9A_CANFA Ras-related protein Rab-9A
1s8f D GDP
GUANOSINE-5'-DIPHOSPHATE[28 atoms]
A 82.4
/58.2
17
/17
RAB9A_CANFA Ras-related protein Rab-9A
1s8f K GDP
GUANOSINE-5'-DIPHOSPHATE[28 atoms]
B 81.2
/57.1
16
/16
RAB9A_CANFA Ras-related protein Rab-9A
1s8f K GDP
GUANOSINE-5'-DIPHOSPHATE[28 atoms]
B 81.2
/57.1
16
/16
RAB9A_CANFA Ras-related protein Rab-9A
1vg0 F GDP
GUANOSINE-5'-DIPHOSPHATE[28 atoms]
B 100.0
/100.0
17
/17
RAB7_RAT Ras-related protein Rab-7
1vg1 C GDP
GUANOSINE-5'-DIPHOSPHATE[28 atoms]
A 100.0
/100.0
16
/16
RAB7_RAT Ras-related protein Rab-7
1vg9 K GDP
GUANOSINE-5'-DIPHOSPHATE[28 atoms]
B 100.0
/100.0
18
/18
RAB7_RAT Ras-related protein Rab-7
1vg9 O GDP
GUANOSINE-5'-DIPHOSPHATE[28 atoms]
D 100.0
/100.0
16
/16
RAB7_RAT Ras-related protein Rab-7
1vg9 S GDP
GUANOSINE-5'-DIPHOSPHATE[28 atoms]
F 100.0
/100.0
18
/18
RAB7_RAT Ras-related protein Rab-7
1vg9 W GDP
GUANOSINE-5'-DIPHOSPHATE[28 atoms]
H 100.0
/100.0
16
/16
RAB7_RAT Ras-related protein Rab-7
1wms C GDP
GUANOSINE-5'-DIPHOSPHATE[28 atoms]
A 76.5
/57.8
17
/17
RAB9A_HUMAN Ras-related protein Rab-9A
1wms D GDP
GUANOSINE-5'-DIPHOSPHATE[28 atoms]
B 76.5
/59.1
17
/17
RAB9A_HUMAN Ras-related protein Rab-9A
8zq3 C GDP
GUANOSINE-5'-DIPHOSPHATE[28 atoms]
A 100.0
/99.4
17
/17
RAB7A_HUMAN Ras-related protein Rab-7a
1ky2 C GNP
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER[32 ato..
A 90.0
/70.1
20
/20
YPT7_YEAST GTP-BINDING PROTEIN YPT7P
1vg8 F GNP
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER[32 ato..
A 100.0
/100.0
22
/22
RAB7_RAT Ras-related protein Rab-7
1vg8 H GNP
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER[32 ato..
B 100.0
/100.0
24
/24
RAB7_RAT Ras-related protein Rab-7
1vg8 J GNP
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER[32 ato..
C 100.0
/100.0
24
/24
RAB7_RAT Ras-related protein Rab-7
1vg8 L GNP
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER[32 ato..
D 100.0
/100.0
23
/23
RAB7_RAT Ras-related protein Rab-7
1yzl C GNP
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER[32 ato..
A 70.8
/55.3
24
/24
RAB9A_MOUSE Ras-related protein Rab-9A
2ocb C GNP
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER[32 ato..
A 70.8
/57.1
24
/24
RAB9B_HUMAN Ras-related protein Rab-9B
3law G GNP
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER[32 ato..
A 95.7
/99.4
23
/23
RAB7A_HUMAN Ras-related protein Rab-7a
3law I GNP
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER[32 ato..
B 95.2
/99.4
21
/21
RAB7A_HUMAN Ras-related protein Rab-7a
3law K GNP
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER[32 ato..
C 95.7
/99.4
23
/23
RAB7A_HUMAN Ras-related protein Rab-7a
3law M GNP
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER[32 ato..
D 96.0
/99.4
25
/25
RAB7A_HUMAN Ras-related protein Rab-7a
3law O GNP
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER[32 ato..
E 95.8
/99.4
24
/24
RAB7A_HUMAN Ras-related protein Rab-7a
1t91 F GTP
GUANOSINE-5'-TRIPHOSPHATE[32 atoms]
A 100.0
/99.4
23
/23
RAB7_HUMAN Ras-related protein Rab-7
1t91 H GTP
GUANOSINE-5'-TRIPHOSPHATE[32 atoms]
B 100.0
/99.4
23
/23
RAB7_HUMAN Ras-related protein Rab-7
1t91 J GTP
GUANOSINE-5'-TRIPHOSPHATE[32 atoms]
C 100.0
/99.4
23
/23
RAB7_HUMAN Ras-related protein Rab-7
1t91 L GTP
GUANOSINE-5'-TRIPHOSPHATE[32 atoms]
D 100.0
/99.4
23
/23
RAB7_HUMAN Ras-related protein Rab-7
1yhn D GTP
GUANOSINE-5'-TRIPHOSPHATE[32 atoms]
A 100.0
/99.5
23
/23
RAB7_HUMAN Ras-related protein Rab-7
1yhn D GTP
GUANOSINE-5'-TRIPHOSPHATE[32 atoms]
A 100.0
/99.5
23
/23
RAB7_HUMAN Ras-related protein Rab-7
4qxa C GTP
GUANOSINE-5'-TRIPHOSPHATE[32 atoms]
A 69.2
/54.7
26
/26
RAB9A_MOUSE Ras-related protein Rab-9A
5z2m F GTP
GUANOSINE-5'-TRIPHOSPHATE[32 atoms]
B 100.0
/99.4
23
/23
RAB7A_MOUSE Ras-related protein Rab-7a
5z2m G GTP
GUANOSINE-5'-TRIPHOSPHATE[32 atoms]
C 100.0
/99.4
24
/24
RAB7A_MOUSE Ras-related protein Rab-7a
6iyb F GTP
GUANOSINE-5'-TRIPHOSPHATE[32 atoms]
A 100.0
/99.4
25
/25
RAB7A_HUMAN Ras-related protein Rab-7a
6iyb H GTP
GUANOSINE-5'-TRIPHOSPHATE[32 atoms]
C 100.0
/99.4
22
/22
RAB7A_HUMAN Ras-related protein Rab-7a
6wcw C GTP
GUANOSINE-5'-TRIPHOSPHATE[32 atoms]
A 100.0
/99.4
23
/23
RAB7A_HUMAN Ras-related protein Rab-7a
7e1t F GTP
GUANOSINE-5'-TRIPHOSPHATE[32 atoms]
A 66.7
/56.9
24
/24
RAB9A_HUMAN Ras-related protein Rab-9A
7e1t H GTP
GUANOSINE-5'-TRIPHOSPHATE[32 atoms]
B 70.8
/56.5
24
/24
RAB9A_HUMAN Ras-related protein Rab-9A
7f6j E GTP
GUANOSINE-5'-TRIPHOSPHATE[32 atoms]
A 100.0
/99.4
24
/24
RAB7A_HUMAN Ras-related protein Rab-7a
7f6j G GTP
GUANOSINE-5'-TRIPHOSPHATE[32 atoms]
B 100.0
/99.4
23
/23
RAB7A_HUMAN Ras-related protein Rab-7a
8kb8 F GTP
GUANOSINE-5'-TRIPHOSPHATE[32 atoms]
C 96.0
/99.4
25
/25
RAB7A_HUMAN Ras-related protein Rab-7a
8kb8 H GTP
GUANOSINE-5'-TRIPHOSPHATE[32 atoms]
D 100.0
/99.4
22
/22
RAB7A_HUMAN Ras-related protein Rab-7a
4phh E 2UK
5'-O-[(R)-hydroxy{[(S)-hydroxy(phosphonoamino)phos..
A 90.0
/69.5
20
/20
YPT7_YEAST GTP-binding protein YPT7
4phh H 2UK
5'-O-[(R)-hydroxy{[(S)-hydroxy(phosphonoamino)phos..
B 89.5
/69.3
19
/19
YPT7_YEAST GTP-binding protein YPT7
4phh K 2UK
5'-O-[(R)-hydroxy{[(S)-hydroxy(phosphonoamino)phos..
C 90.9
/71.2
22
/22
YPT7_YEAST GTP-binding protein YPT7
4phh M 2UK
5'-O-[(R)-hydroxy{[(S)-hydroxy(phosphonoamino)phos..
D 90.9
/69.6
22
/22
YPT7_YEAST GTP-binding protein YPT7
4phg C 2UJ
N-[3-(propanoylamino)propyl]guanosine 5'-(tetrahyd..
A 91.3
/68.4
23
/23
YPT7_YEAST GTP-binding protein YPT7
4phf B 2UH
N-[3-(propanoylamino)propyl]guanosine 5'-(trihydro..
A 87.5
/67.3
16
/16
YPT7_YEAST GTP-binding protein YPT7
1s8f E BEZ
BENZOIC ACID[9 atoms]
A 50.0
/58.2
2
/2
RAB9A_CANFA Ras-related protein Rab-9A
1s8f E BEZ
BENZOIC ACID[9 atoms]
A 100.0
/58.2
4
/4
RAB9A_CANFA Ras-related protein Rab-9A
1s8f E BEZ
BENZOIC ACID[9 atoms]
A 100.0
/58.2
4
/4
RAB9A_CANFA Ras-related protein Rab-9A
1s8f E BEZ
BENZOIC ACID[9 atoms]
A 50.0
/58.2
2
/2
RAB9A_CANFA Ras-related protein Rab-9A
1s8f F BEZ
BENZOIC ACID[9 atoms]
A 100.0
/58.2
2
/2
RAB9A_CANFA Ras-related protein Rab-9A
1s8f F BEZ
BENZOIC ACID[9 atoms]
A 100.0
/58.2
2
/2
RAB9A_CANFA Ras-related protein Rab-9A
1s8f G BEZ
BENZOIC ACID[9 atoms]
A 75.0
/58.2
4
/4
RAB9A_CANFA Ras-related protein Rab-9A
1s8f G BEZ
BENZOIC ACID[9 atoms]
A 75.0
/58.2
4
/4
RAB9A_CANFA Ras-related protein Rab-9A
1s8f E BEZ
BENZOIC ACID[9 atoms]
B 100.0
/57.1
2
/2
RAB9A_CANFA Ras-related protein Rab-9A
1s8f E BEZ
BENZOIC ACID[9 atoms]
B 100.0
/57.1
2
/2
RAB9A_CANFA Ras-related protein Rab-9A
1s8f F BEZ
BENZOIC ACID[9 atoms]
B 75.0
/57.1
4
/4
RAB9A_CANFA Ras-related protein Rab-9A
1s8f F BEZ
BENZOIC ACID[9 atoms]
B 75.0
/57.1
4
/4
RAB9A_CANFA Ras-related protein Rab-9A
1s8f G BEZ
BENZOIC ACID[9 atoms]
B 100.0
/57.1
1
/1
RAB9A_CANFA Ras-related protein Rab-9A
1s8f G BEZ
BENZOIC ACID[9 atoms]
B 100.0
/57.1
1
/1
RAB9A_CANFA Ras-related protein Rab-9A
1s8f L BEZ
BENZOIC ACID[9 atoms]
B 66.7
/57.1
9
/9
RAB9A_CANFA Ras-related protein Rab-9A
1s8f L BEZ
BENZOIC ACID[9 atoms]
B 66.7
/57.1
9
/9
RAB9A_CANFA Ras-related protein Rab-9A
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
METAL
207 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
1vg9 J K
POTASSIUM ION[1 atoms]
B 100.0
/100.0
1
/1
RAB7_RAT Ras-related protein Rab-7
1vg9 N K
POTASSIUM ION[1 atoms]
D 100.0
/100.0
1
/1
RAB7_RAT Ras-related protein Rab-7
1vg9 R K
POTASSIUM ION[1 atoms]
F 100.0
/100.0
1
/1
RAB7_RAT Ras-related protein Rab-7
1vg9 V K
POTASSIUM ION[1 atoms]
H 100.0
/100.0
1
/1
RAB7_RAT Ras-related protein Rab-7
1ky2 B MG
MAGNESIUM ION[1 atoms]
A 100.0
/70.1
2
/2
YPT7_YEAST GTP-BINDING PROTEIN YPT7P
1ky3 B MG
MAGNESIUM ION[1 atoms]
A 100.0
/67.3
1
/1
YPT7_YEAST GTP-BINDING PROTEIN YPT7P
1s8f H MG
MAGNESIUM ION[1 atoms]
B 0.0
/57.1
2
/2
RAB9A_CANFA Ras-related protein Rab-9A
1s8f H MG
MAGNESIUM ION[1 atoms]
B 0.0
/57.1
2
/2
RAB9A_CANFA Ras-related protein Rab-9A
1t91 E MG
MAGNESIUM ION[1 atoms]
A 100.0
/99.4
2
/2
RAB7_HUMAN Ras-related protein Rab-7
1t91 G MG
MAGNESIUM ION[1 atoms]
B 100.0
/99.4
2
/2
RAB7_HUMAN Ras-related protein Rab-7
1t91 I MG
MAGNESIUM ION[1 atoms]
C 100.0
/99.4
2
/2
RAB7_HUMAN Ras-related protein Rab-7
1t91 K MG
MAGNESIUM ION[1 atoms]
D 100.0
/99.4
2
/2
RAB7_HUMAN Ras-related protein Rab-7
1vg0 E MG
MAGNESIUM ION[1 atoms]
B 100.0
/100.0
2
/2
RAB7_RAT Ras-related protein Rab-7
1vg1 B MG
MAGNESIUM ION[1 atoms]
A 100.0
/100.0
1
/1
RAB7_RAT Ras-related protein Rab-7
1vg8 E MG
MAGNESIUM ION[1 atoms]
A 100.0
/100.0
3
/3
RAB7_RAT Ras-related protein Rab-7
1vg8 G MG
MAGNESIUM ION[1 atoms]
B 100.0
/100.0
3
/3
RAB7_RAT Ras-related protein Rab-7
1vg8 I MG
MAGNESIUM ION[1 atoms]
C 100.0
/100.0
3
/3
RAB7_RAT Ras-related protein Rab-7
1vg8 K MG
MAGNESIUM ION[1 atoms]
D 100.0
/100.0
2
/2
RAB7_RAT Ras-related protein Rab-7
1vg9 I MG
MAGNESIUM ION[1 atoms]
B 100.0
/100.0
2
/2
RAB7_RAT Ras-related protein Rab-7
1vg9 M MG
MAGNESIUM ION[1 atoms]
D 100.0
/100.0
2
/2
RAB7_RAT Ras-related protein Rab-7
1vg9 Q MG
MAGNESIUM ION[1 atoms]
F 100.0
/100.0
2
/2
RAB7_RAT Ras-related protein Rab-7
1vg9 U MG
MAGNESIUM ION[1 atoms]
H 100.0
/100.0
2
/2
RAB7_RAT Ras-related protein Rab-7
1yhn C MG
MAGNESIUM ION[1 atoms]
A 100.0
/99.5
5
/5
RAB7_HUMAN Ras-related protein Rab-7
1yhn C MG
MAGNESIUM ION[1 atoms]
A 100.0
/99.5
5
/5
RAB7_HUMAN Ras-related protein Rab-7
1yzl B MG
MAGNESIUM ION[1 atoms]
A 66.7
/55.3
3
/3
RAB9A_MOUSE Ras-related protein Rab-9A
2ocb B MG
MAGNESIUM ION[1 atoms]
A 66.7
/57.1
3
/3
RAB9B_HUMAN Ras-related protein Rab-9B
3law F MG
MAGNESIUM ION[1 atoms]
A 100.0
/99.4
4
/4
RAB7A_HUMAN Ras-related protein Rab-7a
3law H MG
MAGNESIUM ION[1 atoms]
B 100.0
/99.4
4
/4
RAB7A_HUMAN Ras-related protein Rab-7a
3law J MG
MAGNESIUM ION[1 atoms]
C 100.0
/99.4
4
/4
RAB7A_HUMAN Ras-related protein Rab-7a
3law L MG
MAGNESIUM ION[1 atoms]
D 100.0
/99.4
4
/4
RAB7A_HUMAN Ras-related protein Rab-7a
3law N MG
MAGNESIUM ION[1 atoms]
E 100.0
/99.4
4
/4
RAB7A_HUMAN Ras-related protein Rab-7a
4phf C MG
MAGNESIUM ION[1 atoms]
A 100.0
/67.3
1
/1
YPT7_YEAST GTP-binding protein YPT7
4phg B MG
MAGNESIUM ION[1 atoms]
A 100.0
/68.4
3
/3
YPT7_YEAST GTP-binding protein YPT7
4phh F MG
MAGNESIUM ION[1 atoms]
A 100.0
/69.5
3
/3
YPT7_YEAST GTP-binding protein YPT7
4phh I MG
MAGNESIUM ION[1 atoms]
B 100.0
/69.3
3
/3
YPT7_YEAST GTP-binding protein YPT7
4phh L MG
MAGNESIUM ION[1 atoms]
C 100.0
/71.2
3
/3
YPT7_YEAST GTP-binding protein YPT7
4phh N MG
MAGNESIUM ION[1 atoms]
D 100.0
/69.6
3
/3
YPT7_YEAST GTP-binding protein YPT7
4qxa D MG
MAGNESIUM ION[1 atoms]
A 66.7
/54.7
3
/3
RAB9A_MOUSE Ras-related protein Rab-9A
5z2m E MG
MAGNESIUM ION[1 atoms]
B 100.0
/99.4
3
/3
RAB7A_MOUSE Ras-related protein Rab-7a
6iyb E MG
MAGNESIUM ION[1 atoms]
A 100.0
/99.4
2
/2
RAB7A_HUMAN Ras-related protein Rab-7a
6iyb G MG
MAGNESIUM ION[1 atoms]
C 100.0
/99.4
3
/3
RAB7A_HUMAN Ras-related protein Rab-7a
6wcw D MG
MAGNESIUM ION[1 atoms]
A 100.0
/99.4
5
/5
RAB7A_HUMAN Ras-related protein Rab-7a
7e1t E MG
MAGNESIUM ION[1 atoms]
A 66.7
/56.9
3
/3
RAB9A_HUMAN Ras-related protein Rab-9A
7e1t G MG
MAGNESIUM ION[1 atoms]
B 66.7
/56.5
3
/3
RAB9A_HUMAN Ras-related protein Rab-9A
7f6j D MG
MAGNESIUM ION[1 atoms]
A 100.0
/99.4
3
/3
RAB7A_HUMAN Ras-related protein Rab-7a
7f6j F MG
MAGNESIUM ION[1 atoms]
B 100.0
/99.4
2
/2
RAB7A_HUMAN Ras-related protein Rab-7a
8kb8 E MG
MAGNESIUM ION[1 atoms]
C 100.0
/99.4
4
/4
RAB7A_HUMAN Ras-related protein Rab-7a
8kb8 G MG
MAGNESIUM ION[1 atoms]
D 100.0
/99.4
3
/3
RAB7A_HUMAN Ras-related protein Rab-7a
1s8f J CL
CHLORIDE ION[1 atoms]
B 0.0
/57.1
4
/4
RAB9A_CANFA Ras-related protein Rab-9A
1s8f J CL
CHLORIDE ION[1 atoms]
B 0.0
/57.1
4
/4
RAB9A_CANFA Ras-related protein Rab-9A
4phh G CL
CHLORIDE ION[1 atoms]
A 0.0
/69.5
1
/1
YPT7_YEAST GTP-binding protein YPT7
4phh J CL
CHLORIDE ION[1 atoms]
B 80.0
/69.3
5
/5
YPT7_YEAST GTP-binding protein YPT7
4phh O CL
CHLORIDE ION[1 atoms]
D 75.0
/69.6
4
/4
YPT7_YEAST GTP-binding protein YPT7
4phg D YT3
YTTRIUM (III) ION[1 atoms]
A 0.0
/68.4
1
/1
YPT7_YEAST GTP-binding protein YPT7
4phg E YT3
YTTRIUM (III) ION[1 atoms]
A 100.0
/68.4
2
/2
YPT7_YEAST GTP-binding protein YPT7
4phg F YT3
YTTRIUM (III) ION[1 atoms]
A 100.0
/68.4
1
/1
YPT7_YEAST GTP-binding protein YPT7
1s8f C SR
STRONTIUM ION[1 atoms]
A 0.0
/58.2
1
/1
RAB9A_CANFA Ras-related protein Rab-9A
1s8f C SR
STRONTIUM ION[1 atoms]
A 0.0
/58.2
1
/1
RAB9A_CANFA Ras-related protein Rab-9A
1s8f I SR
STRONTIUM ION[1 atoms]
B 66.7
/57.1
3
/3
RAB9A_CANFA Ras-related protein Rab-9A
1s8f I SR
STRONTIUM ION[1 atoms]
B 66.7
/57.1
3
/3
RAB9A_CANFA Ras-related protein Rab-9A
1s8f I SR
STRONTIUM ION[1 atoms]
B 66.7
/57.1
3
/3
RAB9A_CANFA Ras-related protein Rab-9A
1s8f I SR
STRONTIUM ION[1 atoms]
B 66.7
/57.1
3
/3
RAB9A_CANFA Ras-related protein Rab-9A
2ocb D UNX
UNKNOWN ATOM OR ION[1 atoms]
A 0.0
/57.1
1
/1
RAB9B_HUMAN Ras-related protein Rab-9B
2ocb E UNX
UNKNOWN ATOM OR ION[1 atoms]
A 25.0
/57.1
4
/4
RAB9B_HUMAN Ras-related protein Rab-9B
2ocb F UNX
UNKNOWN ATOM OR ION[1 atoms]
A 33.3
/57.1
3
/3
RAB9B_HUMAN Ras-related protein Rab-9B
2ocb G UNX
UNKNOWN ATOM OR ION[1 atoms]
A 50.0
/57.1
4
/4
RAB9B_HUMAN Ras-related protein Rab-9B
2ocb H UNX
UNKNOWN ATOM OR ION[1 atoms]
A 100.0
/57.1
2
/2
RAB9B_HUMAN Ras-related protein Rab-9B
2ocb I UNX
UNKNOWN ATOM OR ION[1 atoms]
A 100.0
/57.1
2
/2
RAB9B_HUMAN Ras-related protein Rab-9B
2ocb J UNX
UNKNOWN ATOM OR ION[1 atoms]
A 0.0
/57.1
2
/2
RAB9B_HUMAN Ras-related protein Rab-9B
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
HOMO
207 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
1s8f A RAB9A_CANFA Ras-related protein Rab-9A[168 aa] A 50.0
/58.2
2
/2
RAB9A_CANFA Ras-related protein Rab-9A
1s8f A RAB9A_CANFA Ras-related protein Rab-9A[168 aa] A 50.0
/58.2
2
/2
RAB9A_CANFA Ras-related protein Rab-9A
1s8f B RAB9A_CANFA Ras-related protein Rab-9A[173 aa] A 66.7
/58.2
18
/18
RAB9A_CANFA Ras-related protein Rab-9A
1s8f B RAB9A_CANFA Ras-related protein Rab-9A[173 aa] A 50.0
/58.2
6
/6
RAB9A_CANFA Ras-related protein Rab-9A
1s8f B RAB9A_CANFA Ras-related protein Rab-9A[173 aa] A 50.0
/58.2
6
/6
RAB9A_CANFA Ras-related protein Rab-9A
1s8f B RAB9A_CANFA Ras-related protein Rab-9A[173 aa] A 66.7
/58.2
18
/18
RAB9A_CANFA Ras-related protein Rab-9A
1s8f A RAB9A_CANFA Ras-related protein Rab-9A[168 aa] B 57.9
/57.1
19
/19
RAB9A_CANFA Ras-related protein Rab-9A
1s8f A RAB9A_CANFA Ras-related protein Rab-9A[168 aa] B 28.6
/57.1
7
/7
RAB9A_CANFA Ras-related protein Rab-9A
1s8f A RAB9A_CANFA Ras-related protein Rab-9A[168 aa] B 28.6
/57.1
7
/7
RAB9A_CANFA Ras-related protein Rab-9A
1s8f A RAB9A_CANFA Ras-related protein Rab-9A[168 aa] B 57.9
/57.1
19
/19
RAB9A_CANFA Ras-related protein Rab-9A
1s8f B RAB9A_CANFA Ras-related protein Rab-9A[173 aa] B 60.0
/57.1
5
/5
RAB9A_CANFA Ras-related protein Rab-9A
1s8f B RAB9A_CANFA Ras-related protein Rab-9A[173 aa] B 60.0
/57.1
5
/5
RAB9A_CANFA Ras-related protein Rab-9A
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
PRECIPITANT
207 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
1vg0 G PG4
TETRAETHYLENE GLYCOL[13 atoms]
B 100.0
/100.0
4
/4
RAB7_RAT Ras-related protein Rab-7
1vg9 L P33
3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL[22 atoms]
B 100.0
/100.0
5
/5
RAB7_RAT Ras-related protein Rab-7
1vg9 P P33
3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL[22 atoms]
D 100.0
/100.0
5
/5
RAB7_RAT Ras-related protein Rab-7
1vg9 T P33
3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL[22 atoms]
F 100.0
/100.0
5
/5
RAB7_RAT Ras-related protein Rab-7
1vg9 X P33
3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL[22 atoms]
H 100.0
/100.0
5
/5
RAB7_RAT Ras-related protein Rab-7
5ldd G SO4
SULFATE ION[5 atoms]
C 100.0
/85.1
8
/8
G0SGE1_CHATD Rab small monomeric GTPase-like protein
5ldd H SO4
SULFATE ION[5 atoms]
C 80.0
/85.1
5
/5
G0SGE1_CHATD Rab small monomeric GTPase-like protein
5ldd I SO4
SULFATE ION[5 atoms]
F 100.0
/84.2
8
/8
G0SGE1_CHATD Rab small monomeric GTPase-like protein
4phf D NO3
NITRATE ION[4 atoms]
A 66.7
/67.3
6
/6
YPT7_YEAST GTP-binding protein YPT7
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.