Contact Molecules for Homologous Proteins


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PID QueryLength Homolgous Sequence in PDB UniProt Query TITLE
15155 1273 59 P0DTC2(SPIKE_SARS2) RecName: Full=Spike glycoprotein ; Short=S glycoprotein ;AltName: Full=E2 ;AltName: Full=Peplomer protein ;Contains: RecName: Full=Spike protein S1 ;Contains: RecName: Full=Spike protein S2 ;Contains: RecName: Full=Spike protein S2' ;Flags: Precursor;
QUERYSEQ
MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNK
SWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETK
CTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYN
YLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITP
GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECS
NLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAM
QMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLM
SFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDL
QELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT
[BLAST file for PDB] (plain) (bar) (multiple alignment) [BLAST for UniProt: (plain) (bar) (multiple alignment) (PSSM file) ]

UniProt Feature Tables [P0DTC2(SPIKE_SARS2)]

1273
region name description
1-13 SIGNAL
14-1273 CHAIN /note="Spike glycoprotein" /id="PRO_0000449646"
14-685 CHAIN /note="Spike protein S1" /id="PRO_0000449647"
686-1273 CHAIN /note="Spike protein S2" /id="PRO_0000449648"
816-1273 CHAIN /note="Spike protein S2'" /id="PRO_0000449649"
14-1213 TOPO_DOM /note="Extracellular"
1214-1234 TRANSMEM /note="Helical"
1235-1273 TOPO_DOM /note="Cytoplasmic"
14-303 DOMAIN /note="BetaCoV S1-NTD"
334-527 DOMAIN /note="BetaCoV S1-CTD" ECO:0000269|PubMed:32132184"
1-26 REGION /note="Disordered"
67-80 REGION /note="Disordered"
142-164 REGION /note="Disordered"
173-185 REGION /note="Disordered"
246-262 REGION /note="Disordered"
280-301 REGION /note="Putative superantigen; may bind T-cell receptor alpha/TRAC"
319-541 REGION /note="Receptor-binding domain (RBD)"
319-335 REGION /note="Disordered"
403-405 REGION /note="Integrin-binding motif;"
437-508 REGION /note="Receptor-binding motif; binding to human ACE2"
448-456 REGION /note="Immunodominant HLA epitope recognized by the CD8+; called NF9 peptide"
455-490 REGION /note="Disordered"
519-541 REGION /note="Disordered"
621-640 REGION /note="Disordered"
673-687 REGION /note="Disordered"
681-684 REGION /note="Putative superantigen; may bind T-cell receptor beta/TRBC1"
816-837 REGION /note="Fusion peptide 1"
828-853 REGION /note="Disordered"
835-855 REGION /note="Fusion peptide 2"
920-970 REGION /note="Heptad repeat 1"
1163-1202 REGION /note="Heptad repeat 2"
949-993 COILED
1176-1203 COILED
1235-1235 LIPID /note="S-palmitoyl cysteine; by host ZDHHC20"
1236-1236 LIPID /note="S-palmitoyl cysteine; by host ZDHHC20"
1240-1240 LIPID /note="S-palmitoyl cysteine; by host ZDHHC20"
1241-1241 LIPID /note="S-palmitoyl cysteine; by host ZDHHC20"
1243-1243 LIPID /note="S-palmitoyl cysteine; by host ZDHHC20"
1247-1247 LIPID /note="S-palmitoyl cysteine; by host ZDHHC20; partial"
1248-1248 LIPID /note="S-palmitoyl cysteine; by host ZDHHC20; partial"
1250-1250 LIPID /note="S-palmitoyl cysteine; by host ZDHHC20; partial"
1253-1253 LIPID /note="S-palmitoyl cysteine; by host ZDHHC20; partial"
1254-1254 LIPID /note="S-palmitoyl cysteine; by host ZDHHC20; partial"
1-1273 DISORDER predicted by DISOPRED

MONOMER
1273
pdb_id a1 identity[%]2 description
7fg7 A 100.0 SPIKE_SARS2 Spike glycoprotein
6xr8 A 100.0 SPIKE_SARS2 Spike glycoprotein
1.a1:asym_id for the homologue. 2.identity[%]2:sequence identity between the query and the homologue.
HETERO
1273 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
7cwl[12] E Fab P17 heavy chain[120 aa] A 100.0
/100.0
11
/11
SPIKE_SARS2 Spike glycoprotein
7cwl[12] G Fab P17 light chain[108 aa] A 100.0
/100.0
4
/4
SPIKE_SARS2 Spike glycoprotein
7cwl[2] G Fab P17 light chain[108 aa] B 100.0
/100.0
6
/6
SPIKE_SARS2 Spike glycoprotein
7cwn[3] N light chain of H014 Fab[107 aa] A 100.0
/100.0
8
/8
SPIKE_SARS2 Spike glycoprotein
7cws[3] G Light Chain of H014 Fab[107 aa] M 100.0
/100.0
8
/8
SPIKE_SARS2 Spike glycoprotein
7cwn[3] O heavy chain of H014 Fab[122 aa] A 100.0
/100.0
16
/16
SPIKE_SARS2 Spike glycoprotein
7cws[3] H Heavy Chain of H014 Fab[122 aa] M 100.0
/100.0
8
/8
SPIKE_SARS2 Spike glycoprotein
7cws[6] I Heavy Chain of FC05 Fab[120 aa] M 100.0
/100.0
10
/10
SPIKE_SARS2 Spike glycoprotein
7cwu[3] C heavy chain of FC05 Fab[120 aa] G 100.0
/100.0
10
/10
SPIKE_SARS2 Spike glycoprotein
7cws[6] J Light Chain of FC05 Fab[109 aa] M 100.0
/100.0
1
/1
SPIKE_SARS2 Spike glycoprotein
7cwu[3] D light chain of FC05 Fab[109 aa] G 100.0
/100.0
1
/1
SPIKE_SARS2 Spike glycoprotein
7cwt[3] D Light chain Fab of HB27[111 aa] A 100.0
/100.0
4
/4
SPIKE_SARS2 Spike glycoprotein
7cwt[1] J Light chain Fab of HB27[111 aa] B 100.0
/100.0
7
/7
SPIKE_SARS2 Spike glycoprotein
7cwt[3] E Heavy chain Fab of HB27[118 aa] A 100.0
/100.0
12
/12
SPIKE_SARS2 Spike glycoprotein
7fg2[2] B K-874A VHH[116 aa] A 100.0
/100.0
12
/12
SPIKE_SARS2 Spike glycoprotein
7xy4[2] D VHH21[121 aa] A 100.0
/100.0
12
/12
SPIKE_SARS2 Spike glycoprotein
7xy4[1] D VHH21[121 aa] B 100.0
/100.0
2
/2
SPIKE_SARS2 Spike glycoprotein
7xy4[1] D VHH21[121 aa] C 100.0
/100.0
1
/1
SPIKE_SARS2 Spike glycoprotein
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
COMPOUND
1273 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
6xr8[54] NA NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
2
/2
SPIKE_SARS2 Spike glycoprotein
6xr8[27] OA NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
5
/5
SPIKE_SARS2 Spike glycoprotein
6xr8[21] QA NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
1
/1
SPIKE_SARS2 Spike glycoprotein
6xr8[24] RA NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
2
/2
SPIKE_SARS2 Spike glycoprotein
6xr8[9] SA NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
2
/2
SPIKE_SARS2 Spike glycoprotein
6xr8[2] TA NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
1
/1
SPIKE_SARS2 Spike glycoprotein
6zb4[9] F NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
2
/2
SPIKE_SARS2 Spike glycoprotein
6zb4[34] G NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
2
/2
SPIKE_SARS2 Spike glycoprotein
6zb4[9] H NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
2
/2
SPIKE_SARS2 Spike glycoprotein
6zb4[24] I NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
1
/1
SPIKE_SARS2 Spike glycoprotein
6zb4[12] J NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
3
/3
SPIKE_SARS2 Spike glycoprotein
6zb4[10] P NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
1
/1
SPIKE_SARS2 Spike glycoprotein
6zb4[9] W NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
3
/3
SPIKE_SARS2 Spike glycoprotein
6zb4[5] F NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
B 100.0
/100.0
1
/1
SPIKE_SARS2 Spike glycoprotein
6zb4[7] L NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
B 100.0
/100.0
2
/2
SPIKE_SARS2 Spike glycoprotein
6zb4[11] S NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
B 100.0
/100.0
2
/2
SPIKE_SARS2 Spike glycoprotein
6zb4[20] U NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
B 100.0
/100.0
1
/1
SPIKE_SARS2 Spike glycoprotein
6zb5[1] K NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
C 100.0
/100.0
1
/1
SPIKE_SARS2 Spike glycoprotein
6zp0[3] AA NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
3
/3
SPIKE_SARS2 Spike glycoprotein
6zp0[9] KA NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
1
/1
SPIKE_SARS2 Spike glycoprotein
6zp0[3] P NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
3
/3
SPIKE_SARS2 Spike glycoprotein
6zp0[3] PA NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
4
/4
SPIKE_SARS2 Spike glycoprotein
6zp0[3] Q NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
5
/5
SPIKE_SARS2 Spike glycoprotein
6zp0[2] QA NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
1
/1
SPIKE_SARS2 Spike glycoprotein
6zp0[3] R NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
3
/3
SPIKE_SARS2 Spike glycoprotein
6zp0[3] S NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
2
/2
SPIKE_SARS2 Spike glycoprotein
6zp0[3] T NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
2
/2
SPIKE_SARS2 Spike glycoprotein
6zp0[15] U NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
3
/3
SPIKE_SARS2 Spike glycoprotein
6zp0[3] V NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
1
/1
SPIKE_SARS2 Spike glycoprotein
6zp0[3] W NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
2
/2
SPIKE_SARS2 Spike glycoprotein
6zp0[3] X NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
1
/1
SPIKE_SARS2 Spike glycoprotein
6zp0[13] Y NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
3
/3
SPIKE_SARS2 Spike glycoprotein
6zp0[11] Z NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
3
/3
SPIKE_SARS2 Spike glycoprotein
7cwl[13] FA NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
1
/1
SPIKE_SARS2 Spike glycoprotein
7cwl[9] R NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
1
/1
SPIKE_SARS2 Spike glycoprotein
7cws[5] EA NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
M 100.0
/100.0
1
/1
SPIKE_SARS2 Spike glycoprotein
7cwt[6] R NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
3
/3
SPIKE_SARS2 Spike glycoprotein
7cwt[8] S NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
7
/7
SPIKE_SARS2 Spike glycoprotein
7cwt[5] T NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
4
/4
SPIKE_SARS2 Spike glycoprotein
7cwt[2] Z NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
B 100.0
/100.0
1
/1
SPIKE_SARS2 Spike glycoprotein
7e7b[15] RA NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
2
/2
SPIKE_SARS2 CO1A1_HUMAN Spike glycoprotein,Collagen alpha-1(I) chain
7od3[3] L NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
3
/3
SPIKE_SARS2 Spike glycoprotein
7od3[3] N NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
1
/1
SPIKE_SARS2 Spike glycoprotein
7qur[6] Q NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
4
/4
SPIKE_SARS2 WAC_BPT4 Spike glycoprotein,Fibritin
7qur[6] Y NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
4
/4
SPIKE_SARS2 WAC_BPT4 Spike glycoprotein,Fibritin
7wgv[3] BA NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
3
/3
SPIKE_SARS2 Spike glycoprotein
7wgv[3] DA NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
5
/5
SPIKE_SARS2 Spike glycoprotein
7wgv[6] GA NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
1
/1
SPIKE_SARS2 Spike glycoprotein
7wgv[6] HA NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
1
/1
SPIKE_SARS2 Spike glycoprotein
7wgv[3] IA NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
1
/1
SPIKE_SARS2 Spike glycoprotein
7wgv[8] S NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
2
/2
SPIKE_SARS2 Spike glycoprotein
7wgv[8] U NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
1
/1
SPIKE_SARS2 Spike glycoprotein
7wgv[8] V NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
4
/4
SPIKE_SARS2 Spike glycoprotein
7wgv[5] W NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
3
/3
SPIKE_SARS2 Spike glycoprotein
7wgv[7] X NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
2
/2
SPIKE_SARS2 Spike glycoprotein
7wgv[10] Y NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
2
/2
SPIKE_SARS2 Spike glycoprotein
7xy4[2] G NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
2
/2
SPIKE_SARS2 Spike glycoprotein
7xy4[3] R NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
2
/2
SPIKE_SARS2 Spike glycoprotein
7xy4[1] GA NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
B 100.0
/100.0
1
/1
SPIKE_SARS2 Spike glycoprotein
7xy4[1] HA NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
B 100.0
/100.0
1
/1
SPIKE_SARS2 Spike glycoprotein
7xy4[1] FA NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
C 100.0
/100.0
5
/5
SPIKE_SARS2 Spike glycoprotein
7e7b[3] XA VCG
2-hydroxyethyl 2-deoxy-3,5-bis-O-(2-hydroxyethyl)-..
A 100.0
/100.0
11
/11
SPIKE_SARS2 CO1A1_HUMAN Spike glycoprotein,Collagen alpha-1(I) chain
7e7b[3] YA VCG
2-hydroxyethyl 2-deoxy-3,5-bis-O-(2-hydroxyethyl)-..
A 100.0
/100.0
3
/3
SPIKE_SARS2 CO1A1_HUMAN Spike glycoprotein,Collagen alpha-1(I) chain
7qur[3] BA GE9
2,3,5-tris(iodanyl)benzamide[12 atoms]
A 100.0
/100.0
5
/5
SPIKE_SARS2 WAC_BPT4 Spike glycoprotein,Fibritin
7qur[3] CA SIA
N-acetyl-alpha-neuraminic acid[21 atoms]
A 100.0
/100.0
8
/8
SPIKE_SARS2 WAC_BPT4 Spike glycoprotein,Fibritin
7wgv[5] EA BLR
3-[5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrr..
A 100.0
/100.0
11
/11
SPIKE_SARS2 Spike glycoprotein
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
OTHERPOLY
1273 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
6xr8[3] D alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-be.. A 100.0
/100.0
4
/4
SPIKE_SARS2 Spike glycoprotein
6xr8[3] G alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-be.. A 100.0
/100.0
7
/7
SPIKE_SARS2 Spike glycoprotein
6xr8[3] J alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-be.. A 100.0
/100.0
3
/3
SPIKE_SARS2 Spike glycoprotein
6xr8[3] JA alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-be.. A 100.0
/100.0
1
/1
SPIKE_SARS2 Spike glycoprotein
6xr8[3] K alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-be.. A 100.0
/100.0
1
/1
SPIKE_SARS2 Spike glycoprotein
6xr8[3] L alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-be.. A 100.0
/100.0
4
/4
SPIKE_SARS2 Spike glycoprotein
6xr8[3] M alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-be.. A 100.0
/100.0
3
/3
SPIKE_SARS2 Spike glycoprotein
6xr8[3] N alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-be.. A 100.0
/100.0
4
/4
SPIKE_SARS2 Spike glycoprotein
6xr8[3] V alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-be.. A 100.0
/100.0
6
/6
SPIKE_SARS2 Spike glycoprotein
6xr8[6] E 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-a.. A 100.0
/100.0
3
/3
SPIKE_SARS2 Spike glycoprotein
6xr8[3] H 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-a.. A 100.0
/100.0
3
/3
SPIKE_SARS2 Spike glycoprotein
6xr8[9] I 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-a.. A 100.0
/100.0
1
/1
SPIKE_SARS2 Spike glycoprotein
6xr8[9] U 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-a.. A 100.0
/100.0
2
/2
SPIKE_SARS2 Spike glycoprotein
6zb4[25] D 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-a.. A 100.0
/100.0
3
/3
SPIKE_SARS2 Spike glycoprotein
6zp0[6] D 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-a.. A 100.0
/100.0
4
/4
SPIKE_SARS2 Spike glycoprotein
6zp0[6] E 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-a.. A 100.0
/100.0
3
/3
SPIKE_SARS2 Spike glycoprotein
6zp0[6] F 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-a.. A 100.0
/100.0
4
/4
SPIKE_SARS2 Spike glycoprotein
6zp0[6] G 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-a.. A 100.0
/100.0
1
/1
SPIKE_SARS2 Spike glycoprotein
7cwm[20] J 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-a.. A 100.0
/100.0
3
/3
SPIKE_SARS2 Spike glycoprotein
7cwm[21] L 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-a.. A 100.0
/100.0
3
/3
SPIKE_SARS2 Spike glycoprotein
7cwm[15] M 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-a.. A 100.0
/100.0
2
/2
SPIKE_SARS2 Spike glycoprotein
7cwm[15] N 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-a.. A 100.0
/100.0
4
/4
SPIKE_SARS2 Spike glycoprotein
7cwm[13] J 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-a.. C 100.0
/100.0
2
/2
SPIKE_SARS2 Spike glycoprotein
7cws[9] P 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-a.. M 100.0
/100.0
3
/3
SPIKE_SARS2 Spike glycoprotein
7e7b[5] D 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-a.. A 100.0
/100.0
4
/4
SPIKE_SARS2 CO1A1_HUMAN Spike glycoprotein,Collagen alpha-1(I) chain
7e7b[5] DA 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-a.. A 100.0
/100.0
1
/1
SPIKE_SARS2 CO1A1_HUMAN Spike glycoprotein,Collagen alpha-1(I) chain
7e7b[6] H 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-a.. A 100.0
/100.0
3
/3
SPIKE_SARS2 CO1A1_HUMAN Spike glycoprotein,Collagen alpha-1(I) chain
7e7b[6] J 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-a.. A 100.0
/100.0
5
/5
SPIKE_SARS2 CO1A1_HUMAN Spike glycoprotein,Collagen alpha-1(I) chain
7e7b[3] K 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-a.. A 100.0
/100.0
5
/5
SPIKE_SARS2 CO1A1_HUMAN Spike glycoprotein,Collagen alpha-1(I) chain
7e7b[6] M 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-a.. A 100.0
/100.0
2
/2
SPIKE_SARS2 CO1A1_HUMAN Spike glycoprotein,Collagen alpha-1(I) chain
7e7b[6] O 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-a.. A 100.0
/100.0
3
/3
SPIKE_SARS2 CO1A1_HUMAN Spike glycoprotein,Collagen alpha-1(I) chain
7wgv[8] D 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-a.. A 100.0
/100.0
2
/2
SPIKE_SARS2 Spike glycoprotein
7wgv[8] E 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-a.. A 100.0
/100.0
2
/2
SPIKE_SARS2 Spike glycoprotein
7wgv[4] F 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-a.. A 100.0
/100.0
1
/1
SPIKE_SARS2 Spike glycoprotein
7wgv[7] H 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-a.. A 100.0
/100.0
5
/5
SPIKE_SARS2 Spike glycoprotein
7wgv[6] Q 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-a.. A 100.0
/100.0
6
/6
SPIKE_SARS2 Spike glycoprotein
7wgx[3] E 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-a.. A 100.0
/100.0
4
/4
SPIKE_SARS2 Spike glycoprotein
6xr8[3] F 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[al.. A 100.0
/100.0
4
/4
SPIKE_SARS2 Spike glycoprotein
6xr8[3] O alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-.. A 100.0
/100.0
1
/1
SPIKE_SARS2 Spike glycoprotein
7qur[6] G alpha-L-fucopyranose-(1-3)-[2-acetamido-2-deoxy-be.. A 100.0
/100.0
2
/2
SPIKE_SARS2 WAC_BPT4 Spike glycoprotein,Fibritin
7qur[6] K alpha-L-fucopyranose-(1-3)-[2-acetamido-2-deoxy-be.. A 100.0
/100.0
3
/3
SPIKE_SARS2 WAC_BPT4 Spike glycoprotein,Fibritin
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
HOMO
1273 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
6xr8[36] B SPIKE_SARS2 Spike glycoprotein[1107 aa] A 100.0
/100.0
134
/134
SPIKE_SARS2 Spike glycoprotein
6xr8[36] C SPIKE_SARS2 Spike glycoprotein[1107 aa] A 100.0
/100.0
123
/123
SPIKE_SARS2 Spike glycoprotein
6zp0[19] B SPIKE_SARS2 Spike glycoprotein[1030 aa] A 100.0
/100.0
86
/86
SPIKE_SARS2 Spike glycoprotein
6zp0[19] C SPIKE_SARS2 Spike glycoprotein[1030 aa] A 100.0
/100.0
98
/98
SPIKE_SARS2 Spike glycoprotein
7wgy[1] B SPIKE_SARS2 Spike glycoprotein[821 aa] A 100.0
/100.0
73
/73
SPIKE_SARS2 Spike glycoprotein
7wgy[1] B SPIKE_SARS2 Spike glycoprotein[821 aa] C 100.0
/100.0
55
/55
SPIKE_SARS2 Spike glycoprotein
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
PRECIPITANT
1273 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
6zb4[11] FA EIC
LINOLEIC ACID[20 atoms]
A 100.0
/100.0
1
/1
SPIKE_SARS2 Spike glycoprotein
6zb4[15] K EIC
LINOLEIC ACID[20 atoms]
A 100.0
/100.0
10
/10
SPIKE_SARS2 Spike glycoprotein
7wgv[3] AA EIC
LINOLEIC ACID[20 atoms]
A 100.0
/100.0
15
/15
SPIKE_SARS2 Spike glycoprotein
7wgv[3] AB EIC
LINOLEIC ACID[20 atoms]
A 100.0
/100.0
1
/1
SPIKE_SARS2 Spike glycoprotein
7e7b[6] VA ELA
9-OCTADECENOIC ACID[20 atoms]
A 100.0
/100.0
14
/14
SPIKE_SARS2 CO1A1_HUMAN Spike glycoprotein,Collagen alpha-1(I) chain
7e7b[6] WA ELA
9-OCTADECENOIC ACID[20 atoms]
A 100.0
/100.0
4
/4
SPIKE_SARS2 CO1A1_HUMAN Spike glycoprotein,Collagen alpha-1(I) chain
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.