Contact Molecules for Homologous Proteins | ||||
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PID | QueryLength | Homolgous Sequence in PDB | UniProt Query | TITLE |
14620 | 1255 | 25 | P59594(SPIKE_SARS) | RecName: Full=Spike glycoprotein ; Short=S glycoprotein ;AltName: Full=E2 ;AltName: Full=Peplomer protein ;Contains: RecName: Full=Spike protein S1 ;Contains: RecName: Full=Spike protein S2 ;Contains: RecName: Full=Spike protein S2' ;Flags: Precursor; |
QUERYSEQ |
MFIFLLFLTLTSGSDLDRCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNFELCDNPFFAVSKPMGTQTHT MIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIY QTSNFRVVPSGDVVRFPNITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRP FERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQD VNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALS GIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYE NQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYV PSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWL GFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDEDDSEPVLKGVKLHYT |
1255 | region | name | description |
1-13 | SIGNAL | ||
14-1255 | CHAIN | /note="Spike glycoprotein" /id="PRO_0000037208" | |
14-667 | CHAIN | /note="Spike protein S1" /id="PRO_0000037209" | |
668-1255 | CHAIN | /note="Spike protein S2" /id="PRO_0000037210" | |
798-1255 | CHAIN | /note="Spike protein S2'" /id="PRO_0000444082" | |
14-1195 | TOPO_DOM | /note="Extracellular" | |
1196-1216 | TRANSMEM | /note="Helical" | |
1217-1255 | TOPO_DOM | /note="Cytoplasmic" | |
14-290 | DOMAIN | /note="BetaCoV S1-NTD" | |
321-513 | DOMAIN | /note="BetaCoV S1-CTD" | |
306-527 | REGION | /note="Receptor-binding domain (RBD)" | |
424-494 | REGION | /note="Receptor-binding motif; binding to human ACE2" | |
798-819 | REGION | /note="Fusion peptide 1" ECO:0000305|PubMed:29056462" | |
817-837 | REGION | /note="Fusion peptide 2" ECO:0000305|PubMed:29056462" | |
902-952 | REGION | /note="Heptad repeat 1" | |
1145-1184 | REGION | /note="Heptad repeat 2" | |
931-975 | COILED | ||
1157-1185 | COILED | ||
1-1255 | DISORDER | predicted by DISOPRED |
MONOMER | |||||||
1255 | |||||||
pdb_id | a1 | identity[%]2 | description | ||||
6ack | B | 100.0 | SPIKE_CVHSA Spike glycoprotein | ||||
1.a1:asym_id for the homologue. 2.identity[%]2:sequence identity between the query and the homologue. |
HETERO | |||||||
1255 | pdb_id | contact mol | homologue | ||||
a3 | description | a4 | identity[%]5 | Ncon6 | description | ||
6acg[3] | D | ACE2_HUMAN Angiotensin-converting enzyme 2[597 aa] | C | 100.0 /100.0 |
16 /16 |
SPIKE_CVHSA Spike glycoprotein | |
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue. | |||||||
COMPOUND | |||||||
1255 | pdb_id | contact mol | homologue | ||||
a3 | description | a4 | identity[%]5 | Ncon6 | description | ||
7zh5[1] | D |
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms].. |
A | 100.0 /100.0 |
3 /3 |
SPIKE_SARS WAC_BPT4 Spike glycoprotein,Fibritin | |
7zh5[1] | E |
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms].. |
A | 100.0 /100.0 |
1 /1 |
SPIKE_SARS WAC_BPT4 Spike glycoprotein,Fibritin | |
7zh5[2] | F |
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms].. |
A | 100.0 /100.0 |
2 /2 |
SPIKE_SARS WAC_BPT4 Spike glycoprotein,Fibritin | |
7zh5[2] | G |
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms].. |
A | 100.0 /100.0 |
1 /1 |
SPIKE_SARS WAC_BPT4 Spike glycoprotein,Fibritin | |
7zh5[2] | H |
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms].. |
A | 100.0 /100.0 |
2 /2 |
SPIKE_SARS WAC_BPT4 Spike glycoprotein,Fibritin | |
7zh5[2] | I |
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms].. |
A | 100.0 /100.0 |
4 /4 |
SPIKE_SARS WAC_BPT4 Spike glycoprotein,Fibritin | |
7zh5[2] | J |
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms].. |
A | 100.0 /100.0 |
4 /4 |
SPIKE_SARS WAC_BPT4 Spike glycoprotein,Fibritin | |
7zh5[7] | K |
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms].. |
A | 100.0 /100.0 |
2 /2 |
SPIKE_SARS WAC_BPT4 Spike glycoprotein,Fibritin | |
7zh5[6] | L |
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms].. |
A | 100.0 /100.0 |
3 /3 |
SPIKE_SARS WAC_BPT4 Spike glycoprotein,Fibritin | |
7zh5[1] | N |
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms].. |
A | 100.0 /100.0 |
3 /3 |
SPIKE_SARS WAC_BPT4 Spike glycoprotein,Fibritin | |
7zh5[6] | T |
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms].. |
A | 100.0 /100.0 |
1 /1 |
SPIKE_SARS WAC_BPT4 Spike glycoprotein,Fibritin | |
7zh5[1] | V |
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms].. |
C | 100.0 /100.0 |
1 /1 |
SPIKE_SARS WAC_BPT4 Spike glycoprotein,Fibritin | |
8h15[4] | D |
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms].. |
A | 100.0 /100.0 |
2 /2 |
SPIKE_SARS Spike glycoprotein | |
8h15[4] | E |
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms].. |
A | 100.0 /100.0 |
3 /3 |
SPIKE_SARS Spike glycoprotein | |
8h15[5] | G |
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms].. |
A | 100.0 /100.0 |
4 /4 |
SPIKE_SARS Spike glycoprotein | |
8h15[2] | J |
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms].. |
A | 100.0 /100.0 |
1 /1 |
SPIKE_SARS Spike glycoprotein | |
8h15[1] | J |
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms].. |
B | 100.0 /100.0 |
1 /1 |
SPIKE_SARS Spike glycoprotein | |
8h15[4] | L |
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms].. |
B | 100.0 /100.0 |
2 /2 |
SPIKE_SARS Spike glycoprotein | |
8h15[3] | U |
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms].. |
B | 100.0 /100.0 |
1 /1 |
SPIKE_SARS Spike glycoprotein | |
8h15[3] | T |
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms].. |
C | 100.0 /100.0 |
1 /1 |
SPIKE_SARS Spike glycoprotein | |
8h16[2] | G |
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms].. |
A | 100.0 /100.0 |
2 /2 |
SPIKE_SARS Spike glycoprotein | |
8h16[2] | H |
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms].. |
A | 100.0 /100.0 |
2 /2 |
SPIKE_SARS Spike glycoprotein | |
8h16[2] | K |
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms].. |
A | 100.0 /100.0 |
2 /2 |
SPIKE_SARS Spike glycoprotein | |
8h16[1] | R |
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms].. |
A | 100.0 /100.0 |
1 /1 |
SPIKE_SARS Spike glycoprotein | |
8h16[1] | G |
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms].. |
C | 100.0 /100.0 |
1 /1 |
SPIKE_SARS Spike glycoprotein | |
8h16[1] | K |
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms].. |
C | 100.0 /100.0 |
1 /1 |
SPIKE_SARS Spike glycoprotein | |
8h16[1] | X |
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms].. |
C | 100.0 /100.0 |
2 /2 |
SPIKE_SARS Spike glycoprotein | |
8h16[1] | Z |
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms].. |
C | 100.0 /100.0 |
3 /3 |
SPIKE_SARS Spike glycoprotein | |
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue. | |||||||
HOMO | |||||||
1255 | pdb_id | contact mol | homologue | ||||
a3 | description | a4 | identity[%]5 | Ncon6 | description | ||
5xlr[18] | B | SPIKE_CVHSA Spike glycoprotein[1022 aa] | A | 100.0 /100.0 |
69 /69 |
SPIKE_CVHSA Spike glycoprotein | |
5xlr[18] | C | SPIKE_CVHSA Spike glycoprotein[1022 aa] | A | 100.0 /100.0 |
77 /77 |
SPIKE_CVHSA Spike glycoprotein | |
7zh5[5] | B | SPIKE_SARS WAC_BPT4 Spike glycoprotein,Fibritin[926 aa] | A | 100.0 /100.0 |
79 /79 |
SPIKE_SARS WAC_BPT4 Spike glycoprotein,Fibritin | |
7zh5[5] | B | SPIKE_SARS WAC_BPT4 Spike glycoprotein,Fibritin[926 aa] | C | 100.0 /100.0 |
65 /65 |
SPIKE_SARS WAC_BPT4 Spike glycoprotein,Fibritin | |
7zh5[1] | C | SPIKE_SARS WAC_BPT4 Spike glycoprotein,Fibritin[962 aa] | A | 100.0 /100.0 |
76 /76 |
SPIKE_SARS WAC_BPT4 Spike glycoprotein,Fibritin | |
7zh5[1] | A | SPIKE_SARS WAC_BPT4 Spike glycoprotein,Fibritin[904 aa] | C | 100.0 /100.0 |
74 /74 |
SPIKE_SARS WAC_BPT4 Spike glycoprotein,Fibritin | |
8h16[1] | B | SPIKE_SARS Spike glycoprotein[805 aa] | A | 100.0 /100.0 |
60 /60 |
SPIKE_SARS Spike glycoprotein | |
8h16[1] | B | SPIKE_SARS Spike glycoprotein[805 aa] | C | 100.0 /100.0 |
77 /77 |
SPIKE_SARS Spike glycoprotein | |
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue. |