Contact Molecules for Homologous Proteins


[Full Bars]

[SiteTable]


Summary Bars[100 %]


[Back to Search Page]

[Back to HOMCOS]

[SupCon3D]

[help]
seq_id(%): [0] [30] [40] [50] [60] [70] [80] [90] [95] [100]
[show] [download] [help]
PID QueryLength Homolgous Sequence in PDB UniProt Query TITLE
14620 1255 25 P59594(SPIKE_SARS) RecName: Full=Spike glycoprotein ; Short=S glycoprotein ;AltName: Full=E2 ;AltName: Full=Peplomer protein ;Contains: RecName: Full=Spike protein S1 ;Contains: RecName: Full=Spike protein S2 ;Contains: RecName: Full=Spike protein S2' ;Flags: Precursor;
QUERYSEQ
MFIFLLFLTLTSGSDLDRCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNFELCDNPFFAVSKPMGTQTHT
MIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIY
QTSNFRVVPSGDVVRFPNITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRP
FERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQD
VNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALS
GIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYE
NQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYV
PSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWL
GFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDEDDSEPVLKGVKLHYT
[BLAST file for PDB] (plain) (bar) (multiple alignment) [BLAST for UniProt: (plain) (bar) (multiple alignment) (PSSM file) ]

UniProt Feature Tables [P59594(SPIKE_SARS)]

1255
region name description
1-13 SIGNAL
14-1255 CHAIN /note="Spike glycoprotein" /id="PRO_0000037208"
14-667 CHAIN /note="Spike protein S1" /id="PRO_0000037209"
668-1255 CHAIN /note="Spike protein S2" /id="PRO_0000037210"
798-1255 CHAIN /note="Spike protein S2'" /id="PRO_0000444082"
14-1195 TOPO_DOM /note="Extracellular"
1196-1216 TRANSMEM /note="Helical"
1217-1255 TOPO_DOM /note="Cytoplasmic"
14-290 DOMAIN /note="BetaCoV S1-NTD"
321-513 DOMAIN /note="BetaCoV S1-CTD"
306-527 REGION /note="Receptor-binding domain (RBD)"
424-494 REGION /note="Receptor-binding motif; binding to human ACE2"
798-819 REGION /note="Fusion peptide 1" ECO:0000305|PubMed:29056462"
817-837 REGION /note="Fusion peptide 2" ECO:0000305|PubMed:29056462"
902-952 REGION /note="Heptad repeat 1"
1145-1184 REGION /note="Heptad repeat 2"
931-975 COILED
1157-1185 COILED
1-1255 DISORDER predicted by DISOPRED

MONOMER
1255
pdb_id a1 identity[%]2 description
6ack B 100.0 SPIKE_CVHSA Spike glycoprotein
1.a1:asym_id for the homologue. 2.identity[%]2:sequence identity between the query and the homologue.
HETERO
1255 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
6acg[3] D ACE2_HUMAN Angiotensin-converting enzyme 2[597 aa] C 100.0
/100.0
16
/16
SPIKE_CVHSA Spike glycoprotein
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
COMPOUND
1255 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
7zh5[1] D NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
3
/3
SPIKE_SARS WAC_BPT4 Spike glycoprotein,Fibritin
7zh5[1] E NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
1
/1
SPIKE_SARS WAC_BPT4 Spike glycoprotein,Fibritin
7zh5[2] F NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
2
/2
SPIKE_SARS WAC_BPT4 Spike glycoprotein,Fibritin
7zh5[2] G NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
1
/1
SPIKE_SARS WAC_BPT4 Spike glycoprotein,Fibritin
7zh5[2] H NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
2
/2
SPIKE_SARS WAC_BPT4 Spike glycoprotein,Fibritin
7zh5[2] I NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
4
/4
SPIKE_SARS WAC_BPT4 Spike glycoprotein,Fibritin
7zh5[2] J NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
4
/4
SPIKE_SARS WAC_BPT4 Spike glycoprotein,Fibritin
7zh5[7] K NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
2
/2
SPIKE_SARS WAC_BPT4 Spike glycoprotein,Fibritin
7zh5[6] L NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
3
/3
SPIKE_SARS WAC_BPT4 Spike glycoprotein,Fibritin
7zh5[1] N NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
3
/3
SPIKE_SARS WAC_BPT4 Spike glycoprotein,Fibritin
7zh5[6] T NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
1
/1
SPIKE_SARS WAC_BPT4 Spike glycoprotein,Fibritin
7zh5[1] V NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
C 100.0
/100.0
1
/1
SPIKE_SARS WAC_BPT4 Spike glycoprotein,Fibritin
8h15[4] D NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
2
/2
SPIKE_SARS Spike glycoprotein
8h15[4] E NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
3
/3
SPIKE_SARS Spike glycoprotein
8h15[5] G NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
4
/4
SPIKE_SARS Spike glycoprotein
8h15[2] J NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
1
/1
SPIKE_SARS Spike glycoprotein
8h15[1] J NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
B 100.0
/100.0
1
/1
SPIKE_SARS Spike glycoprotein
8h15[4] L NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
B 100.0
/100.0
2
/2
SPIKE_SARS Spike glycoprotein
8h15[3] U NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
B 100.0
/100.0
1
/1
SPIKE_SARS Spike glycoprotein
8h15[3] T NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
C 100.0
/100.0
1
/1
SPIKE_SARS Spike glycoprotein
8h16[2] G NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
2
/2
SPIKE_SARS Spike glycoprotein
8h16[2] H NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
2
/2
SPIKE_SARS Spike glycoprotein
8h16[2] K NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
2
/2
SPIKE_SARS Spike glycoprotein
8h16[1] R NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
1
/1
SPIKE_SARS Spike glycoprotein
8h16[1] G NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
C 100.0
/100.0
1
/1
SPIKE_SARS Spike glycoprotein
8h16[1] K NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
C 100.0
/100.0
1
/1
SPIKE_SARS Spike glycoprotein
8h16[1] X NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
C 100.0
/100.0
2
/2
SPIKE_SARS Spike glycoprotein
8h16[1] Z NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
C 100.0
/100.0
3
/3
SPIKE_SARS Spike glycoprotein
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
HOMO
1255 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
5xlr[18] B SPIKE_CVHSA Spike glycoprotein[1022 aa] A 100.0
/100.0
69
/69
SPIKE_CVHSA Spike glycoprotein
5xlr[18] C SPIKE_CVHSA Spike glycoprotein[1022 aa] A 100.0
/100.0
77
/77
SPIKE_CVHSA Spike glycoprotein
7zh5[5] B SPIKE_SARS WAC_BPT4 Spike glycoprotein,Fibritin[926 aa] A 100.0
/100.0
79
/79
SPIKE_SARS WAC_BPT4 Spike glycoprotein,Fibritin
7zh5[5] B SPIKE_SARS WAC_BPT4 Spike glycoprotein,Fibritin[926 aa] C 100.0
/100.0
65
/65
SPIKE_SARS WAC_BPT4 Spike glycoprotein,Fibritin
7zh5[1] C SPIKE_SARS WAC_BPT4 Spike glycoprotein,Fibritin[962 aa] A 100.0
/100.0
76
/76
SPIKE_SARS WAC_BPT4 Spike glycoprotein,Fibritin
7zh5[1] A SPIKE_SARS WAC_BPT4 Spike glycoprotein,Fibritin[904 aa] C 100.0
/100.0
74
/74
SPIKE_SARS WAC_BPT4 Spike glycoprotein,Fibritin
8h16[1] B SPIKE_SARS Spike glycoprotein[805 aa] A 100.0
/100.0
60
/60
SPIKE_SARS Spike glycoprotein
8h16[1] B SPIKE_SARS Spike glycoprotein[805 aa] C 100.0
/100.0
77
/77
SPIKE_SARS Spike glycoprotein
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.