Contact Molecules for Homologous Proteins


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PID QueryLength Homolgous Sequence in PDB UniProt Query TITLE
22598 425 31 P84022(SMAD3_HUMAN) RecName: Full=Mothers against decapentaplegic homolog 3; Short=MAD homolog 3; Short=Mad3; Short=Mothers against DPP homolog 3; Short=hMAD-3;AltName: Full=JV15-2;AltName: Full=SMAD family member 3; Short=SMAD 3; Short=Smad3; Short=hSMAD3;
QUERYSEQ
MSSILPFTPPIVKRLLGWKKGEQNGQEEKWCEKAVKSLVKKLKKTGQLDELEKAITTQNVNTKCITIPRSLDGRLQVSHRKGLPHVIYCRLWRWPDLHSHHELRAMELCEFAFNMKKDEVCVNPYHYQRVETPVLPPVLVPRHTEIPAEF
PPLDDYSHSIPENTNFPAGIEPQSNIPETPPPGYLSEDGETSDHQMNHSMDAGSPNLSPNPMSPAHNNLDLQPVTYCEPAFWCSISYYELNQRVGETFHASQPSMTVDGFTDPSNSERFCLGLLSNVNRNAAVELTRRHIGRGVRLYYIG
GEVFAECLSDSAIFVQSPNCNQRYGWHPATVCKIPPGCNLKIFNNQEFAALLAQSVNQGFEAVYQLTRMCTIRMSFVKGWGAEYRRQTVTSTPCWIELHLNGPLQWLDKVLTQMGSPSIRCSSVS
[BLAST file for PDB] (plain) (bar) (multiple alignment) [BLAST for UniProt: (plain) (bar) (multiple alignment) (PSSM file) ]

UniProt Feature Tables [P84022(SMAD3_HUMAN)]

425
region name description
2-425 CHAIN /note="Mothers against decapentaplegic homolog 3" /id="PRO_0000090856"
10-136 DOMAIN /note="MH1"
232-425 DOMAIN /note="MH2"
137-231 REGION /note="Linker"
165-208 REGION /note="Disordered"
271-324 REGION /note="Sufficient for interaction with XPO4"
64-64 BINDING /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105"
109-109 BINDING /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105"
121-121 BINDING /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105"
126-126 BINDING /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105"
1-425 DISORDER predicted by DISOPRED

MONOMER
425
pdb_id a1 identity[%]2 description
1mk2 A 100.0 SMAD3_HUMAN SMAD 3
1ozj C 100.0 SMAD3_HUMAN SMAD 3
1.a1:asym_id for the homologue. 2.identity[%]2:sequence identity between the query and the homologue.
HETERO
425 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
1dev[4] B ZFYV9_HUMAN Smad anchor for receptor activation[41 aa] A 100.0
/97.4
31
/31
SMAD2_HUMAN MAD (mothers against decapentaplegic, Drosophila) ..
5xoc[3] B THIO_ECOLI FOXH1_HUMAN Thioredoxin 1,Forkhead box protein H1[133 aa] A 100.0
/100.0
26
/26
SMAD3_HUMAN Mothers against decapentaplegic homolog 3
5zoj[1] D MAN1_HUMAN Inner nuclear membrane protein Man1[127 aa] A 100.0
/97.9
12
/12
SMAD2_HUMAN Mothers against decapentaplegic homolog 2
5zoj[1] E MAN1_HUMAN Inner nuclear membrane protein Man1[116 aa] B 100.0
/97.8
15
/15
SMAD2_HUMAN Mothers against decapentaplegic homolog 2
6m64[2] B CBP[19 aa] A 100.0
/96.0
11
/11
SMAD2_HUMAN Mothers against decapentaplegic homolog 2
6m64[1] F CBP[27 aa] E 100.0
/97.4
16
/16
SMAD2_HUMAN Mothers against decapentaplegic homolog 2
7co1[2] B CBP_HUMAN CREB-binding protein[20 aa] A 100.0
/97.4
12
/12
SMAD2_HUMAN Mothers against decapentaplegic homolog 2
7co1[1] F CBP_HUMAN CREB-binding protein[18 aa] E 100.0
/97.4
14
/14
SMAD2_HUMAN Mothers against decapentaplegic homolog 2
1u7f[2] B SMAD4_HUMAN Mothers against decapentaplegic homolog 4[193 aa] A 96.3
/100.0
27
/28
SMAD3_HUMAN Mothers against decapentaplegic homolog 3
1u7f[2] B SMAD4_HUMAN Mothers against decapentaplegic homolog 4[193 aa] C 100.0
/100.0
20
/20
SMAD3_HUMAN Mothers against decapentaplegic homolog 3
5xod[3] B SKI_HUMAN Ski oncogene[22 aa] A 100.0
/97.4
20
/20
SMAD2_HUMAN Mothers against decapentaplegic homolog 2
6zvq[3] B SKI_HUMAN Ski oncogene[27 aa] A 95.0
/96.5
20
/20
SMAD2_HUMAN Mothers against decapentaplegic homolog 2
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
NUCLEOTIDE
425 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
1mhd[2] A DNA C 100.0
/100.0
9
/9
SMAD3_HUMAN SMAD3
1mhd[1] B DNA C 100.0
/100.0
4
/4
SMAD3_HUMAN SMAD3
1mhd[1] B DNA D 100.0
/100.0
7
/7
SMAD3_HUMAN SMAD3
1ozj[2] A Smad binding element C 100.0
/100.0
10
/10
SMAD3_HUMAN SMAD 3
1ozj[2] B Smad binding element C 100.0
/100.0
6
/6
SMAD3_HUMAN SMAD 3
5odg[4] C DNA (5'-D(P*CP*AP*GP*GP*CP*TP*AP*GP*CP*CP*TP*GP*CP.. A 100.0
/100.0
8
/8
SMAD3_HUMAN Mothers against decapentaplegic homolog 3
5odg[4] D DNA (5'-D(P*CP*AP*GP*GP*CP*TP*AP*GP*CP*CP*TP*GP*CP.. A 100.0
/100.0
5
/5
SMAD3_HUMAN Mothers against decapentaplegic homolog 3
5od6[1] C DNA (5'-D(P*TP*GP*CP*AP*GP*GP*CP*GP*CP*GP*CP*CP*TP.. A 100.0
/100.0
5
/5
SMAD3_HUMAN Mothers against decapentaplegic homolog 3
5od6[5] D DNA (5'-D(P*TP*GP*CP*AP*GP*GP*CP*GP*CP*GP*CP*CP*TP.. A 100.0
/100.0
9
/9
SMAD3_HUMAN Mothers against decapentaplegic homolog 3
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
COMPOUND
425 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
6zvq[3] I TAR
D(-)-TARTARIC ACID[10 atoms]
A 100.0
/96.5
2
/2
SMAD2_HUMAN Mothers against decapentaplegic homolog 2
6zvq[3] J TAR
D(-)-TARTARIC ACID[10 atoms]
A 100.0
/96.5
4
/4
SMAD2_HUMAN Mothers against decapentaplegic homolog 2
6zvq[3] J TAR
D(-)-TARTARIC ACID[10 atoms]
A 100.0
/96.5
6
/6
SMAD2_HUMAN Mothers against decapentaplegic homolog 2
6zvq[3] O TAR
D(-)-TARTARIC ACID[10 atoms]
A 100.0
/96.5
4
/4
SMAD2_HUMAN Mothers against decapentaplegic homolog 2
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
METAL
425 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
5odg[2] F CL
CHLORIDE ION[1 atoms]
A 100.0
/100.0
1
/1
SMAD3_HUMAN Mothers against decapentaplegic homolog 3
1ozj[2] E ZN
ZINC ION[1 atoms]
C 100.0
/100.0
4
/4
SMAD3_HUMAN SMAD 3
5od6[6] E ZN
ZINC ION[1 atoms]
A 100.0
/100.0
4
/4
SMAD3_HUMAN Mothers against decapentaplegic homolog 3
6zmn[2] G ZN
ZINC ION[1 atoms]
A 100.0
/96.7
4
/4
SMAD3_HUMAN Mothers against decapentaplegic homolog 3
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
HOMO
425 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
1khx[6] A SMAD2_HUMAN Smad2[203 aa] A 96.3
/96.5
27
/27
SMAD2_HUMAN Smad2
1khx[6] A SMAD2_HUMAN Smad2[203 aa] A 86.7
/96.5
30
/31
SMAD2_HUMAN Smad2
1mk2[2] A SMAD3_HUMAN SMAD 3[197 aa] A 100.0
/100.0
12
/12
SMAD3_HUMAN SMAD 3
1u7f[17] C SMAD3_HUMAN Mothers against decapentaplegic homolog 3[196 aa] A 100.0
/100.0
23
/23
SMAD3_HUMAN Mothers against decapentaplegic homolog 3
1u7f[2] A SMAD3_HUMAN Mothers against decapentaplegic homolog 3[198 aa] C 95.7
/100.0
23
/24
SMAD3_HUMAN Mothers against decapentaplegic homolog 3
5xoc[12] A SMAD3_HUMAN Mothers against decapentaplegic homolog 3[194 aa] A 100.0
/100.0
17
/17
SMAD3_HUMAN Mothers against decapentaplegic homolog 3
5zoj[3] C SMAD2_HUMAN Mothers against decapentaplegic homolog 2[186 aa] A 100.0
/97.9
17
/17
SMAD2_HUMAN Mothers against decapentaplegic homolog 2
1ozj[2] D SMAD3_HUMAN SMAD 3[124 aa] C 100.0
/100.0
1
/1
SMAD3_HUMAN SMAD 3
5od6[2] B SMAD3_HUMAN Mothers against decapentaplegic homolog 3[126 aa] A 100.0
/100.0
5
/5
SMAD3_HUMAN Mothers against decapentaplegic homolog 3
6zmn[2] B SMAD3_HUMAN Mothers against decapentaplegic homolog 3[119 aa] A 88.5
/96.7
26
/26
SMAD3_HUMAN Mothers against decapentaplegic homolog 3
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
PRECIPITANT
425 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
1mk2[4] C ACY
ACETIC ACID[4 atoms]
A 100.0
/100.0
6
/6
SMAD3_HUMAN SMAD 3
1mk2[2] D ACY
ACETIC ACID[4 atoms]
A 100.0
/100.0
6
/6
SMAD3_HUMAN SMAD 3
1mk2[2] E ACY
ACETIC ACID[4 atoms]
A 100.0
/100.0
3
/3
SMAD3_HUMAN SMAD 3
1mk2[2] F ACY
ACETIC ACID[4 atoms]
A 100.0
/100.0
4
/4
SMAD3_HUMAN SMAD 3
6zmn[1] E ACT
ACETATE ION[4 atoms]
A 100.0
/96.7
3
/3
SMAD3_HUMAN Mothers against decapentaplegic homolog 3
6zmn[1] F EDO
1,2-ETHANEDIOL[4 atoms]
A 100.0
/96.7
6
/6
SMAD3_HUMAN Mothers against decapentaplegic homolog 3
6zmn[1] H PGE
TRIETHYLENE GLYCOL[10 atoms]
B 66.7
/96.6
3
/3
SMAD3_HUMAN Mothers against decapentaplegic homolog 3
6zvq[3] C SO4
SULFATE ION[5 atoms]
A 100.0
/96.5
7
/7
SMAD2_HUMAN Mothers against decapentaplegic homolog 2
6zvq[3] D SO4
SULFATE ION[5 atoms]
A 100.0
/96.5
5
/5
SMAD2_HUMAN Mothers against decapentaplegic homolog 2
6zvq[3] E GOL
GLYCEROL[6 atoms]
A 100.0
/96.5
7
/7
SMAD2_HUMAN Mothers against decapentaplegic homolog 2
6zvq[3] F GOL
GLYCEROL[6 atoms]
A 100.0
/96.5
5
/5
SMAD2_HUMAN Mothers against decapentaplegic homolog 2
6zvq[3] F GOL
GLYCEROL[6 atoms]
A 100.0
/96.5
1
/1
SMAD2_HUMAN Mothers against decapentaplegic homolog 2
6zvq[3] G GOL
GLYCEROL[6 atoms]
A 100.0
/96.5
4
/4
SMAD2_HUMAN Mothers against decapentaplegic homolog 2
6zvq[3] H GOL
GLYCEROL[6 atoms]
A 100.0
/96.5
3
/3
SMAD2_HUMAN Mothers against decapentaplegic homolog 2
6zvq[3] H GOL
GLYCEROL[6 atoms]
A 0.0
/96.5
1
/1
SMAD2_HUMAN Mothers against decapentaplegic homolog 2
6zvq[3] K GOL
GLYCEROL[6 atoms]
A 100.0
/96.5
6
/6
SMAD2_HUMAN Mothers against decapentaplegic homolog 2
6zvq[3] L GOL
GLYCEROL[6 atoms]
A 100.0
/96.5
4
/4
SMAD2_HUMAN Mothers against decapentaplegic homolog 2
6zvq[3] L GOL
GLYCEROL[6 atoms]
A 80.0
/96.5
5
/5
SMAD2_HUMAN Mothers against decapentaplegic homolog 2
6zvq[3] M GOL
GLYCEROL[6 atoms]
A 100.0
/96.5
3
/3
SMAD2_HUMAN Mothers against decapentaplegic homolog 2
6zvq[3] N GOL
GLYCEROL[6 atoms]
A 100.0
/96.5
2
/2
SMAD2_HUMAN Mothers against decapentaplegic homolog 2
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.