Contact Molecules for Homologous Proteins


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PID QueryLength Homolgous Sequence in PDB UniProt Query TITLE
17152 313 27 O43765(SGTA_HUMAN) RecName: Full=Small glutamine-rich tetratricopeptide repeat-containing protein alpha;AltName: Full=Alpha-SGT;AltName: Full=Vpu-binding protein; Short=UBP;
QUERYSEQ
MDNKKRLAYAIIQFLHDQLRHGGLSSDAQESLEVAIQCLETAFGVTVEDSDLALPQTLPEIFEAAATGKEMPQDLRSPARTPPSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCER
AICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAPSPTGGVGSFDIAGLLNNPGFMSMASNLMNNPQIQQLMSGMISGGNNPLGTPGTSPSQNDLASLIQAGQQFAQQMQQQNPELIEQLRSQIR
SRTPSASNDDQQE
[BLAST file for PDB] (plain) (bar) (multiple alignment) [BLAST for UniProt: (plain) (bar) (multiple alignment) (PSSM file) ]

UniProt Feature Tables [O43765(SGTA_HUMAN)]

313
region name description
1-313 CHAIN /note="Small glutamine-rich tetratricopeptide repeat- containing protein alpha" /id="PRO_0000106365"
91-124 REPEAT /note="TPR 1"
125-158 REPEAT /note="TPR 2"
159-192 REPEAT /note="TPR 3"
66-100 REGION /note="Disordered"
250-269 REGION /note="Disordered"
80-100 COMPBIAS /note="Basic and acidic residues"
1-313 DISORDER predicted by DISOPRED

MONOMER
313
pdb_id a1 identity[%]2 description
2vyi A 100.0 Q6FIA9_HUMAN SGTA PROTEIN
4cpg B 100.0 SGTA_HUMAN SMALL GLUTAMINE-RICH TETRATRICOPEPTIDE REPEAT-CONTAINING PROTEIN ALPHA
1.a1:asym_id for the homologue. 2.identity[%]2:sequence identity between the query and the homologue.
HETERO
313 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
6hpg[3] I HS904_ARATH Heat shock protein 90-4[7 aa] C 60.0
/46.4
15
/15
OE64M_ARATH Outer envelope protein 64, mitochondrial
5lyn[2] D PRO-THR-VAL-GLU-GLU-VAL-ASP[7 aa] A 60.0
/45.9
15
/17
SGT2_YEAST Small glutamine-rich tetratricopeptide repeat-cont..
6hpg[5] G HS904_ARATH Heat shock protein 90-4[8 aa] A 60.0
/46.5
15
/15
OE64M_ARATH Outer envelope protein 64, mitochondrial
6q3q[2] D GLY-SER-LYS-MET-GLU-GLU-VAL-ASP[8 aa] A 0.0
/45.6
1
/1
OE64M_ARATH Outer envelope protein 64, mitochondrial
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
COMPOUND
313 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
1na3[1] G IPT
1-methylethyl 1-thio-beta-D-galactopyranoside[15 a..
B 20.0
/41.0
5
/5
designed protein CTPR2
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
METAL
313 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
4goe[2] D CL
CHLORIDE ION[1 atoms]
A 100.0
/100.0
2
/2
SGTA_HUMAN Small glutamine-rich tetratricopeptide repeat-cont..
5lyn[2] E ZN
ZINC ION[1 atoms]
A 0.0
/45.9
1
/1
SGT2_YEAST Small glutamine-rich tetratricopeptide repeat-cont..
5lyn[2] F ZN
ZINC ION[1 atoms]
A 0.0
/45.9
1
/1
SGT2_YEAST Small glutamine-rich tetratricopeptide repeat-cont..
5lyn[2] G ZN
ZINC ION[1 atoms]
A 0.0
/45.9
2
/2
SGT2_YEAST Small glutamine-rich tetratricopeptide repeat-cont..
5lyn[1] I ZN
ZINC ION[1 atoms]
A 100.0
/45.9
1
/1
SGT2_YEAST Small glutamine-rich tetratricopeptide repeat-cont..
5lyn[1] I ZN
ZINC ION[1 atoms]
B 100.0
/45.9
1
/1
SGT2_YEAST Small glutamine-rich tetratricopeptide repeat-cont..
5jjt[2] E NI
NICKEL (II) ION[1 atoms]
A 0.0
/40.8
1
/6
PPP5_ARATH Serine/threonine-protein phosphatase 5
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
HOMO
313 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
4cpg[2] B SGTA_HUMAN SMALL GLUTAMINE-RICH TETRATRICOPEPTIDE REPEAT-CONT.. A 100.0
/100.0
23
/23
SGTA_HUMAN SMALL GLUTAMINE-RICH TETRATRICOPEPTIDE REPEAT-CONT..
4god[6] B SGTA_HUMAN Small glutamine-rich tetratricopeptide repeat-cont.. A 100.0
/100.0
18
/19
SGTA_HUMAN Small glutamine-rich tetratricopeptide repeat-cont..
5lyn[2] B SGT2_YEAST Small glutamine-rich tetratricopeptide repeat-cont.. A 50.0
/45.9
8
/8
SGT2_YEAST Small glutamine-rich tetratricopeptide repeat-cont..
6q3q[2] B OE64M_ARATH Outer envelope protein 64, mitochondrial[121 aa] A 0.0
/45.6
9
/10
OE64M_ARATH Outer envelope protein 64, mitochondrial
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
PRECIPITANT
313 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
4god[1] C MPD
(4S)-2-METHYL-2,4-PENTANEDIOL[8 atoms]
A 100.0
/100.0
4
/4
SGTA_HUMAN Small glutamine-rich tetratricopeptide repeat-cont..
4god[1] D MPD
(4S)-2-METHYL-2,4-PENTANEDIOL[8 atoms]
A 100.0
/100.0
3
/3
SGTA_HUMAN Small glutamine-rich tetratricopeptide repeat-cont..
4goe[3] C BME
BETA-MERCAPTOETHANOL[4 atoms]
A 100.0
/100.0
5
/5
SGTA_HUMAN Small glutamine-rich tetratricopeptide repeat-cont..
4gof[1] E BME
BETA-MERCAPTOETHANOL[4 atoms]
A 100.0
/100.0
1
/1
SGTA_HUMAN Small glutamine-rich tetratricopeptide repeat-cont..
4gof[1] C BME
BETA-MERCAPTOETHANOL[4 atoms]
B 100.0
/100.0
1
/1
SGTA_HUMAN Small glutamine-rich tetratricopeptide repeat-cont..
5lyp[1] B BO4
BORATE ION[5 atoms]
A 33.3
/45.9
3
/3
SGT2_YEAST Small glutamine-rich tetratricopeptide repeat-cont..
6q3q[2] E GOL
GLYCEROL[6 atoms]
A 0.0
/45.6
5
/5
OE64M_ARATH Outer envelope protein 64, mitochondrial
6q3q[2] F GOL
GLYCEROL[6 atoms]
A 0.0
/45.6
2
/2
OE64M_ARATH Outer envelope protein 64, mitochondrial
6q3q[1] G GOL
GLYCEROL[6 atoms]
A 0.0
/45.6
2
/3
OE64M_ARATH Outer envelope protein 64, mitochondrial
6q3q[2] L GOL
GLYCEROL[6 atoms]
A 0.0
/45.6
2
/2
OE64M_ARATH Outer envelope protein 64, mitochondrial
6q3q[1] N GOL
GLYCEROL[6 atoms]
B 50.0
/45.6
4
/4
OE64M_ARATH Outer envelope protein 64, mitochondrial
6q3q[2] H SO4
SULFATE ION[5 atoms]
A 25.0
/45.6
4
/4
OE64M_ARATH Outer envelope protein 64, mitochondrial
6q3q[2] I SO4
SULFATE ION[5 atoms]
A 80.0
/45.6
5
/5
OE64M_ARATH Outer envelope protein 64, mitochondrial
6q3q[2] J SO4
SULFATE ION[5 atoms]
A 25.0
/45.6
4
/4
OE64M_ARATH Outer envelope protein 64, mitochondrial
1na3[1] C TRS
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL[8 atoms]
A 33.3
/41.0
6
/6
designed protein CTPR2
1na3[1] D IPT
1-methylethyl 1-thio-beta-D-galactopyranoside[5 at..
A 20.0
/41.0
5
/5
designed protein CTPR2
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.