Contact Molecules for Homologous Proteins


[Full Bars]

[SiteTable]


Summary Bars[95 %]


[Back to Search Page]

[Back to HOMCOS]

[SupCon3D]

[help]
seq_id(%): [0] [30] [40] [50] [60] [70] [80] [90] [95] [100]
[show] [download] [help]
PID QueryLength Homolgous Sequence in PDB UniProt Query TITLE
16074 313 10 O43765(SGTA_HUMAN) RecName: Full=Small glutamine-rich tetratricopeptide repeat-containing protein alpha;AltName: Full=Alpha-SGT;AltName: Full=Vpu-binding protein; Short=UBP;
QUERYSEQ
MDNKKRLAYAIIQFLHDQLRHGGLSSDAQESLEVAIQCLETAFGVTVEDSDLALPQTLPEIFEAAATGKEMPQDLRSPARTPPSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCER
AICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAPSPTGGVGSFDIAGLLNNPGFMSMASNLMNNPQIQQLMSGMISGGNNPLGTPGTSPSQNDLASLIQAGQQFAQQMQQQNPELIEQLRSQIR
SRTPSASNDDQQE
[BLAST file for PDB] (plain) (bar) (multiple alignment) [BLAST for UniProt: (plain) (bar) (multiple alignment) (PSSM file) ]

UniProt Feature Tables [O43765(SGTA_HUMAN)]

313
region name description
1-313 CHAIN /note="Small glutamine-rich tetratricopeptide repeat- containing protein alpha" /id="PRO_0000106365"
91-124 REPEAT /note="TPR 1"
125-158 REPEAT /note="TPR 2"
159-192 REPEAT /note="TPR 3"
66-100 REGION /note="Disordered"
250-269 REGION /note="Disordered"
80-100 COMPBIAS /note="Basic and acidic residues"
1-313 DISORDER predicted by DISOPRED

MONOMER
313
pdb_id a1 identity[%]2 description
2vyi A 100.0 Q6FIA9_HUMAN SGTA PROTEIN
4cpg B 100.0 SGTA_HUMAN SMALL GLUTAMINE-RICH TETRATRICOPEPTIDE REPEAT-CONTAINING PROTEIN ALPHA
1.a1:asym_id for the homologue. 2.identity[%]2:sequence identity between the query and the homologue.
METAL
313 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
4goe[2] D CL
CHLORIDE ION[1 atoms]
A 100.0
/100.0
2
/2
SGTA_HUMAN Small glutamine-rich tetratricopeptide repeat-cont..
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
HOMO
313 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
4cpg[2] B SGTA_HUMAN SMALL GLUTAMINE-RICH TETRATRICOPEPTIDE REPEAT-CONT.. A 100.0
/100.0
23
/23
SGTA_HUMAN SMALL GLUTAMINE-RICH TETRATRICOPEPTIDE REPEAT-CONT..
4god[6] B SGTA_HUMAN Small glutamine-rich tetratricopeptide repeat-cont.. A 100.0
/100.0
18
/19
SGTA_HUMAN Small glutamine-rich tetratricopeptide repeat-cont..
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
PRECIPITANT
313 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
4god[1] C MPD
(4S)-2-METHYL-2,4-PENTANEDIOL[8 atoms]
A 100.0
/100.0
4
/4
SGTA_HUMAN Small glutamine-rich tetratricopeptide repeat-cont..
4god[1] D MPD
(4S)-2-METHYL-2,4-PENTANEDIOL[8 atoms]
A 100.0
/100.0
3
/3
SGTA_HUMAN Small glutamine-rich tetratricopeptide repeat-cont..
4goe[3] C BME
BETA-MERCAPTOETHANOL[4 atoms]
A 100.0
/100.0
5
/5
SGTA_HUMAN Small glutamine-rich tetratricopeptide repeat-cont..
4gof[1] E BME
BETA-MERCAPTOETHANOL[4 atoms]
A 100.0
/100.0
1
/1
SGTA_HUMAN Small glutamine-rich tetratricopeptide repeat-cont..
4gof[1] C BME
BETA-MERCAPTOETHANOL[4 atoms]
B 100.0
/100.0
1
/1
SGTA_HUMAN Small glutamine-rich tetratricopeptide repeat-cont..
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.