Contact Molecules for Homologous Proteins


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PID QueryLength Homolgous Sequence in PDB UniProt Query TITLE
10624 97 20 P0DTD2(ORF9B_SARS2) RecName: Full=ORF9b protein; Short=ORF9b;AltName: Full=Accessory protein 9b;AltName: Full=ORF-9b;AltName: Full=Protein 9b;
QUERYSEQ
MDPKISEMHPALRLVDPQIQLAVTRMENAVGRDQNNVGPKVYPIILRLGSPLSLNMARKTLNSLEDKAFQLTPIAVQMTKLATTEELPDEFVVVTVK
[BLAST file for PDB] (plain) (bar) (multiple alignment) [BLAST for UniProt: (plain) (bar) (multiple alignment) (PSSM file) ]

UniProt Feature Tables [P0DTD2(ORF9B_SARS2)]

97
region name description
1-97 CHAIN /note="ORF9b protein" /id="PRO_0000449657"
8-97 DOMAIN /note="9b"
1-4 DISORDER predicted by DISOPRED

MONOMER
97
pdb_id a1 identity[%]2 description
7ye8 B 100.0 ORF9B_SARS2 ORF9b protein
1.a1:asym_id for the homologue. 2.identity[%]2:sequence identity between the query and the homologue.
HETERO
97 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
7dhg[2] A TOM70_HUMAN Mitochondrial import receptor subunit TOM70[470 aa.. B 100.0
/100.0
29
/29
ORF9B_SARS2 ORF9b protein
2cme[6] B Y5_CVHSA HYPOTHETICAL PROTEIN 5[79 aa] A 84.4
/80.3
32
/32
Y5_CVHSA HYPOTHETICAL PROTEIN 5
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
COMPOUND
97 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
6z4u[1] C 15P
POLYETHYLENE GLYCOL (N=34)[14 atoms]
B 100.0
/100.0
7
/7
ORF9B_SARS2 Protein 9b
7ye7[1] E DD9
nonane[9 atoms]
A 100.0
/100.0
1
/1
ORF9B_SARS2 ORF9b protein
7ye7[1] E DD9
nonane[9 atoms]
B 100.0
/100.0
2
/2
ORF9B_SARS2 ORF9b protein
7ye7[5] F OCT
N-OCTANE[8 atoms]
C 100.0
/100.0
3
/3
ORF9B_SARS2 ORF9b protein
7ye7[1] F OCT
N-OCTANE[8 atoms]
D 100.0
/100.0
1
/1
ORF9B_SARS2 ORF9b protein
2cme[3] I D10
DECANE[10 atoms]
A 100.0
/80.3
2
/2
Y5_CVHSA HYPOTHETICAL PROTEIN 5
2cme[1] I D10
DECANE[10 atoms]
B 100.0
/80.5
2
/2
Y5_CVHSA HYPOTHETICAL PROTEIN 5
2cme[2] J D10
DECANE[10 atoms]
C 100.0
/81.3
3
/3
Y5_CVHSA HYPOTHETICAL PROTEIN 5
2cme[1] K D10
DECANE[10 atoms]
E 100.0
/81.3
2
/2
Y5_CVHSA HYPOTHETICAL PROTEIN 5
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
HOMO
97 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
6z4u[8] B ORF9B_SARS2 Protein 9b[82 aa] A 100.0
/100.0
33
/33
ORF9B_SARS2 Protein 9b
7ye7[1] B ORF9B_SARS2 ORF9b protein[78 aa] A 100.0
/100.0
32
/32
ORF9B_SARS2 ORF9b protein
7ye8[1] B ORF9B_SARS2 ORF9b protein[88 aa] A 100.0
/100.0
34
/34
ORF9B_SARS2 ORF9b protein
2cme[2] D Y5_CVHSA HYPOTHETICAL PROTEIN 5[76 aa] C 84.4
/81.3
32
/32
Y5_CVHSA HYPOTHETICAL PROTEIN 5
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.