Contact Molecules for Homologous Proteins


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PID QueryLength Homolgous Sequence in PDB UniProt Query TITLE
29161 61 6 P0DTC6(NS6_SARS2) RecName: Full=ORF6 protein; Short=ORF6;AltName: Full=Accessory protein 6;AltName: Full=Non-structural protein 6; Short=ns6;AltName: Full=Protein X3;
QUERYSEQ
MFHLVDFQVTIAEILLIIMRTFKVSIWNLDYIINLIIKNLSKSLTENKYSQLDEEQPMEID
[BLAST file for PDB] (plain) (bar) (multiple alignment) [BLAST for UniProt: (plain) (bar) (multiple alignment) (PSSM file) ]

UniProt Feature Tables [P0DTC6(NS6_SARS2)]

61
region name description
1-61 CHAIN /note="ORF6 protein" /id="PRO_0000449653"
18-24 REGION /note="Important for host Golgi localization"
60-61 DISORDER predicted by DISOPRED

MONOMER
61
pdb_id a1 identity[%]2 description
7vph I 100.0 NS6_SARS2 ORF6 protein
7vph K 100.0 NS6_SARS2 ORF6 protein
7vph L 100.0 NS6_SARS2 ORF6 protein
7vph J 100.0 NS6_SARS2 ORF6 protein
7f60 F 100.0 NS6_SARS2 ORF6 protein
7f60 E 100.0 NS6_SARS2 ORF6 protein
1.a1:asym_id for the homologue. 2.identity[%]2:sequence identity between the query and the homologue.
HETERO
61 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
7f60 A RAE1L_HUMAN mRNA export factor[331 aa] E 100.0
/100.0
9
/9
NS6_SARS2 ORF6 protein
7f60 B RAE1L_HUMAN mRNA export factor[330 aa] F 100.0
/100.0
7
/7
NS6_SARS2 ORF6 protein
7vph C RAE1L_HUMAN mRNA export factor[337 aa] I 100.0
/100.0
9
/9
NS6_SARS2 ORF6 protein
7vph E RAE1L_HUMAN mRNA export factor[336 aa] J 100.0
/100.0
6
/6
NS6_SARS2 ORF6 protein
7vph G RAE1L_HUMAN mRNA export factor[336 aa] K 100.0
/100.0
8
/8
NS6_SARS2 ORF6 protein
7vph A RAE1L_HUMAN mRNA export factor[339 aa] L 100.0
/100.0
8
/8
NS6_SARS2 ORF6 protein
7vph B NUP98_HUMAN Isoform 3 of Nuclear pore complex protein Nup98-Nu.. L 100.0
/100.0
1
/1
NS6_SARS2 ORF6 protein
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.