Contact Molecules for Homologous Proteins

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PID QueryLength Homolgous Sequence in PDB UniProt Query TITLE
3768 422 14 P59595(NCAP_SARS) RecName: Full=Nucleoprotein ;AltName: Full=Nucleocapsid protein ; Short=NC ; Short=Protein N ;
QUERYSEQ 
MSDNGPQSNQRSAPRITFGGPTDSTDNNQNGGRNGARPKQRRPQGLPNNTASWFTALTQHGKEELRFPRGQGVPINTNSGPDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTR
NPNNNAATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYK
HWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTLLPAADMDDFSRQLQNSMSGASADSTQA
[BLAST file for PDB] (plain) (bar) (multiple alignment) [BLAST for UniProt: (plain) (bar) (multiple alignment) (PSSM file) ]

UniProt Feature Tables [P59595(NCAP_SARS)]

422
region name description
1-422 CHAIN /note="Nucleoprotein" /id="PRO_0000106003"
49-176 DOMAIN /note="CoV N NTD"
248-365 DOMAIN /note="CoV N CTD"
1-52 REGION /note="Disordered"
42-187 REGION /note="RNA-binding"
45-181 REGION /note="RNA-binding"
167-214 REGION /note="Disordered"
177-204 REGION /note="SR region"
234-287 REGION /note="Disordered"
259-362 REGION /note="Dimerization"
362-422 REGION /note="Disordered"
1-35 COMPBIAS /note="Polar residues"
178-209 COMPBIAS /note="Polar residues"
234-252 COMPBIAS /note="Polar residues"
265-287 COMPBIAS /note="Polar residues"
363-383 COMPBIAS /note="Basic and acidic residues"
404-422 COMPBIAS /note="Polar residues"
93-93 BINDING /ligand="RNA" /ligand_id="ChEBI:CHEBI:33697"
108-108 BINDING /ligand="RNA" /ligand_id="ChEBI:CHEBI:33697"
150-150 BINDING /ligand="RNA" /ligand_id="ChEBI:CHEBI:33697"
1-422 DISORDER predicted by DISOPRED

MONOMER
422
pdb_id a1 identity[%]2 description
2ofz A 100.0 NCAP_CVHSA Nucleocapsid protein
2jw8 B 100.0 NCAP_CVHSA Nucleocapsid protein 
1.a1:asym_id for the homologue. 2.identity[%]2:sequence identity between the query and the homologue.
HOMO
422 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
2cjr[16] B NCAP_CVHSA NUCLEOCAPSID PROTEIN[113 aa] A 100.0
/100.0		 52
/52		 NCAP_CVHSA NUCLEOCAPSID PROTEIN
2gib[2] A NCAP_CVHSA Nucleocapsid protein[97 aa] A 100.0
/100.0		 8
/8		 NCAP_CVHSA Nucleocapsid protein
2gib[2] A NCAP_CVHSA Nucleocapsid protein[97 aa] A 100.0
/100.0		 6
/6		 NCAP_CVHSA Nucleocapsid protein
2gib[2] B NCAP_CVHSA Nucleocapsid protein[96 aa] A 100.0
/100.0		 1
/1		 NCAP_CVHSA Nucleocapsid protein
2gib[2] A NCAP_CVHSA Nucleocapsid protein[97 aa] B 100.0
/100.0		 3
/3		 NCAP_CVHSA Nucleocapsid protein
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
PRECIPITANT
422 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
2gib[5] C SO4
SULFATE ION[5 atoms] 		A 100.0
/100.0		 2
/2		 NCAP_CVHSA Nucleocapsid protein
2ofz[1] B EDO
1,2-ETHANEDIOL[4 atoms] 		A 100.0
/100.0		 2
/2		 NCAP_CVHSA Nucleocapsid protein
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.