Contact Molecules for Homologous Proteins


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PID QueryLength Homolgous Sequence in PDB UniProt Query TITLE
29474 1170 82 P20701(ITAL_HUMAN) RecName: Full=Integrin alpha-L ;AltName: Full=CD11 antigen-like family member A;AltName: Full=Leukocyte adhesion glycoprotein LFA-1 alpha chain; Short=LFA-1A;AltName: Full=Leukocyte function-associated molecule 1 alpha chain;AltName: CD_antigen=CD11a;Flags: Precursor;
QUERYSEQ
MKDSCITVMAMALLSGFFFFAPASSYNLDVRGARSFSPPRAGRHFGYRVLQVGNGVIVGAPGEGNSTGSLYQCQSGTGHCLPVTLRGSNYTSKYLGMTLATDPTDGSILACDPGLSRTCDQNTYLSGLCYLFRQNLQGPMLQGRPGFQEC
IKGNVDLVFLFDGSMSLQPDEFQKILDFMKDVMKKLSNTSYQFAAVQFSTSYKTEFDFSDYVKRKDPDALLKHVKHMLLLTNTFGAINYVATEVFREELGARPDATKVLIIITDGEATDSGNIDAAKDIIRYIIGIGKHFQTKESQETLH
KFASKPASEFVKILDTFEKLKDLFTELQKKIYVIEGTSKQDLTSFNMELSSSGISADLSRGHAVVGAVGAKDWAGGFLDLKADLQDDTFIGNEPLTPEVRAGYLGYTVTWLPSRQKTSLLASGAPRYQHMGRVLLFQEPQGGGHWSQVQT
IHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGEQRGGRVFIYQRRQLGFEEVSELQGDPGYPLGRFGEAITALTDINGDGLVDVAVGAPLEEQGAVYIFNGRHGGLSPQPSQRIEGTQVLSGIQWFGRSIHGVKDLEGDGLADVA
VGAESQMIVLSSRPVVDMVTLMSFSPAEIPVHEVECSYSTSNKMKEGVNITICFQIKSLIPQFQGRLVANLTYTLQLDGHRTRRRGLFPGGRHELRRNIAVTTSMSCTDFSFHFPVCVQDLISPINVSLNFSLWEEEGTPRDQRAQGKDI
PPILRPSLHSETWEIPFEKNCGEDKKCEANLRVSFSPARSRALRLTAFASLSVELSLSNLEEDAYWVQLDLHFPPGLSFRKVEMLKPHSQIPVSCEELPEESRLLSRALSCNVSSPIFKAGHSVALQMMFNTLVNSSWGDSVELHANVTC
NNEDSDLLEDNSATTIIPILYPINILIQDQEDSTLYVSFTPKGPKIHQVKHMYQVRIQPSIHDHNIPTLEAVVGVPQPPSEGPITHQWSVQMEPPVPCHYEDLERLPDAAEPCLPGALFRCPVVFRQEILVQVIGTLELVGEIEASSMFS
LCSSLSISFNSSKHFHLYGSNASLAQVVMKVDVVYEKQMLYLYVLSGIGGLLLLLLIFIVLYKVGFFKRNLKEKMEAGRGVPNGIPAEDSEQLASGQEAGDPGCLKPLHEKDSESGGGKD
[BLAST file for PDB] (plain) (bar) (multiple alignment) [BLAST for UniProt: (plain) (bar) (multiple alignment) (PSSM file) ]

UniProt Feature Tables [P20701(ITAL_HUMAN)]

1170
region name description
1-25 SIGNAL
26-1170 CHAIN /note="Integrin alpha-L" /id="PRO_0000016292"
26-1090 TOPO_DOM /note="Extracellular"
1091-1111 TRANSMEM /note="Helical"
1112-1170 TOPO_DOM /note="Cytoplasmic"
31-82 REPEAT /note="FG-GAP 1"
83-141 REPEAT /note="FG-GAP 2"
156-327 DOMAIN /note="VWFA"
338-389 REPEAT /note="FG-GAP 3"
390-445 REPEAT /note="FG-GAP 4"
446-506 REPEAT /note="FG-GAP 5"
507-563 REPEAT /note="FG-GAP 6"
567-627 REPEAT /note="FG-GAP 7"
1128-1170 REGION /note="Disordered"
1154-1170 COMPBIAS /note="Basic and acidic residues"
468-468 BINDING /ligand="Ca(2+)" /ligand_id="ChEBI:CHEBI:29108" /ligand_label="1"
470-470 BINDING /ligand="Ca(2+)" /ligand_id="ChEBI:CHEBI:29108" /ligand_label="1"
472-472 BINDING /ligand="Ca(2+)" /ligand_id="ChEBI:CHEBI:29108" /ligand_label="1"
476-476 BINDING /ligand="Ca(2+)" /ligand_id="ChEBI:CHEBI:29108" /ligand_label="1"
530-530 BINDING /ligand="Ca(2+)" /ligand_id="ChEBI:CHEBI:29108" /ligand_label="2"
532-532 BINDING /ligand="Ca(2+)" /ligand_id="ChEBI:CHEBI:29108" /ligand_label="2"
534-534 BINDING /ligand="Ca(2+)" /ligand_id="ChEBI:CHEBI:29108" /ligand_label="2"
538-538 BINDING /ligand="Ca(2+)" /ligand_id="ChEBI:CHEBI:29108" /ligand_label="2"
590-590 BINDING /ligand="Ca(2+)" /ligand_id="ChEBI:CHEBI:29108" /ligand_label="3"
594-594 BINDING /ligand="Ca(2+)" /ligand_id="ChEBI:CHEBI:29108" /ligand_label="3"
598-598 BINDING /ligand="Ca(2+)" /ligand_id="ChEBI:CHEBI:29108" /ligand_label="3"
1-1170 DISORDER predicted by DISOPRED

MONOMER
1170
pdb_id a1 identity[%]2 description
5e6u A 99.8 ITAL_HUMAN Integrin alpha-L
2k8o A 98.3 ITAL_HUMAN Integrin alpha-L
2m3e A 100.0 ITAL_HUMAN Integrin alpha-L
1.a1:asym_id for the homologue. 2.identity[%]2:sequence identity between the query and the homologue.
HETERO
1170 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
3eoa[4] C Efalizumab Fab fragment, heavy chain[215 aa] E 100.0
/100.0
14
/14
ITAL_HUMAN Integrin alpha-L
5e6r[7] B ITB2_HUMAN Integrin beta-2[454 aa] A 100.0
/99.8
33
/33
ITAL_HUMAN Integrin alpha-L
3tcx[14] A ICAM1_HUMAN Intercellular adhesion molecule 1[85 aa] B 100.0
/98.9
13
/13
ITAL_HUMAN Integrin alpha-L
1mq8[2] A ICA1_HUMAN intercellular adhesion molecule-1[184 aa] B 100.0
/98.9
15
/15
ITAL_HUMAN Integrin alpha-L
3eoa[4] A Efalizumab Fab fragment, light chain[214 aa] E 100.0
/100.0
1
/1
ITAL_HUMAN Integrin alpha-L
3hi6[2] D light chain of Fab fragment of AL-57 against alpha.. A 100.0
/98.3
9
/9
ITAL_HUMAN Integrin alpha-L
3hi6[2] C Heavy chain of Fab fragment of AL-57 against alpha.. A 100.0
/98.3
16
/16
ITAL_HUMAN Integrin alpha-L
3bn3[1] B ICAM5_HUMAN Intercellular adhesion molecule 5[196 aa] A 100.0
/98.3
17
/17
ITAL_HUMAN Integrin alpha-L
1t0p[1] B ICAM3_HUMAN Intercellular adhesion molecule-3[86 aa] A 100.0
/98.3
14
/14
ITAL_HUMAN Integrin alpha-L
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
COMPOUND
1170 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
1cqp[2] D 803
LOVASTATIN[29 atoms]
A 100.0
/99.5
9
/9
ITAL_HUMAN ANTIGEN CD11A (P180)
7kc6[2] C 803
LOVASTATIN[29 atoms]
A 100.0
/100.0
9
/9
ITAL_HUMAN Integrin alpha-L
1rd4[4] E L08
1-ACETYL-4-(4-{4-[(2-ETHOXYPHENYL)THIO]-3-NITROPHE..
A 100.0
/100.0
19
/19
ITAL_HUMAN Integrin alpha-L
2ica[1] B 2IC
5-[(5S,9R)-9-(4-CYANOPHENYL)-3-(3,5-DICHLOROPHENYL..
A 100.0
/100.0
12
/12
ITAL_HUMAN Integrin alpha-L
2o7n[1] B 2O7
7A-[(4-cyanophenyl)methyl]-6-(3,5-dichlorophenyl)-..
A 100.0
/100.0
12
/12
ITAL_HUMAN Integrin alpha-L
3m6f[1] B BJZ
6-[(5S,9R)-9-(4-cyanophenyl)-3-(3,5-dichlorophenyl..
A 100.0
/100.0
15
/15
ITAL_HUMAN Integrin alpha-L
7kc5[2] D BJZ
6-[(5S,9R)-9-(4-cyanophenyl)-3-(3,5-dichlorophenyl..
A 100.0
/100.0
12
/12
ITAL_HUMAN Integrin alpha-L
1xdd[2] D AAY
8-[2-((2S)-4-HYDROXY-1-{[5-(HYDROXYMETHYL)-6-METHO..
A 100.0
/99.5
15
/15
ITAL_HUMAN Integrin alpha-L
1xdg[2] D AB8
(1S,3R,8AS)-8-(2-{(4S,6S)-3-(4-HYDROXY-3-METHOXYBE..
A 100.0
/99.5
10
/10
ITAL_HUMAN Integrin alpha-L
3bqm[2] C BQM
3-({4-[(1E)-3-morpholin-4-yl-3-oxoprop-1-en-1-yl]-..
A 100.0
/99.5
15
/15
ITAL_HUMAN Integrin alpha-L
3bqm[2] D BQM
3-({4-[(1E)-3-morpholin-4-yl-3-oxoprop-1-en-1-yl]-..
A 100.0
/99.5
1
/1
ITAL_HUMAN Integrin alpha-L
3bqn[2] C BQN
4-{(2E)-3-[4-{[2-(pyridin-3-ylmethoxy)phenyl]sulfa..
A 100.0
/99.5
18
/18
ITAL_HUMAN Integrin alpha-L
3bqn[2] D BQN
4-{(2E)-3-[4-{[2-(pyridin-3-ylmethoxy)phenyl]sulfa..
A 100.0
/99.5
2
/2
ITAL_HUMAN Integrin alpha-L
3e2m[2] C E2M
cis-4-{[2-({4-[(1E)-3-morpholin-4-yl-3-oxoprop-1-e..
A 100.0
/99.5
17
/17
ITAL_HUMAN Integrin alpha-L
3e2m[2] D E2M
cis-4-{[2-({4-[(1E)-3-morpholin-4-yl-3-oxoprop-1-e..
A 100.0
/99.5
2
/2
ITAL_HUMAN Integrin alpha-L
4ixd[2] C 1HV
4-(3-{4-[(3-aminopropyl)carbamoyl]phenyl}-1H-indaz..
A 100.0
/99.5
9
/9
ITAL_HUMAN Integrin alpha-L
4ixd[2] C 1HV
4-(3-{4-[(3-aminopropyl)carbamoyl]phenyl}-1H-indaz..
A 100.0
/99.5
1
/1
ITAL_HUMAN Integrin alpha-L
1xuo[1] D LA1
(2R)-2-[3-ISOBUTYL-2,5-DIOXO-4-(QUINOLIN-3-YLMETHY..
A 100.0
/99.4
14
/14
ITAL_HUMAN Integrin alpha-L
3f78[2] D ICF
1-CHLORO-2,2,2-TRIFLUOROETHYL DIFLUOROMETHYL ETHER..
A 100.0
/99.4
9
/9
ITAL_HUMAN Integrin alpha-L
5e6r[7] F NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/99.8
2
/2
ITAL_HUMAN Integrin alpha-L
6bxb[4] E NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/99.4
1
/1
ITB3_HUMAN ITAL_HUMAN ITB3_HUMAN Chimera protein of Integrin beta-3 and Integrin al..
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
METAL
1170 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
1cqp[37] C MG
MAGNESIUM ION[1 atoms]
A 100.0
/99.5
4
/4
ITAL_HUMAN ANTIGEN CD11A (P180)
5e6r[7] C MG
MAGNESIUM ION[1 atoms]
A 100.0
/99.8
5
/5
ITAL_HUMAN Integrin alpha-L
6bxb[4] H MG
MAGNESIUM ION[1 atoms]
B 100.0
/99.4
5
/5
ITB3_HUMAN ITAL_HUMAN ITB3_HUMAN Chimera protein of Integrin beta-3 and Integrin al..
6bxj[1] C MG
MAGNESIUM ION[1 atoms]
A 0.0
/99.4
1
/1
ITB3_HUMAN ITAL_HUMAN ITB3_HUMAN Chimera protein of Integrin beta-3 and Integrin al..
7kc3[1] B MG
MAGNESIUM ION[1 atoms]
A 100.0
/98.9
4
/4
ITAL_HUMAN Integrin alpha-L
3eob[2] G ZN
ZINC ION[1 atoms]
C 100.0
/100.0
6
/6
ITAL_HUMAN Integrin alpha-L
1lfa[6] D CL
CHLORIDE ION[1 atoms]
A 100.0
/100.0
3
/3
ITAL_HUMAN CD11A
5e6u[1] F CL
CHLORIDE ION[1 atoms]
A 100.0
/99.8
3
/3
ITAL_HUMAN Integrin alpha-L
5e6r[7] D CA
CALCIUM ION[1 atoms]
A 100.0
/99.8
5
/5
ITAL_HUMAN Integrin alpha-L
5e6r[7] E CA
CALCIUM ION[1 atoms]
A 100.0
/99.8
5
/5
ITAL_HUMAN Integrin alpha-L
5e6s[5] J CA
CALCIUM ION[1 atoms]
A 100.0
/99.8
6
/6
ITAL_HUMAN Integrin alpha-L
6bxb[3] C CA
CALCIUM ION[1 atoms]
A 100.0
/99.4
4
/4
ITB3_HUMAN ITAL_HUMAN ITB3_HUMAN Chimera protein of Integrin beta-3 and Integrin al..
1lfa[5] C MN
MANGANESE (II) ION[1 atoms]
A 100.0
/100.0
3
/3
ITAL_HUMAN CD11A
3hi6[2] G MN
MANGANESE (II) ION[1 atoms]
A 100.0
/98.3
4
/4
ITAL_HUMAN Integrin alpha-L
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
HOMO
1170 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
5e6s[1] C ITAL_HUMAN Integrin alpha-L[578 aa] A 100.0
/99.8
4
/4
ITAL_HUMAN Integrin alpha-L
5e6s[2] E ITAL_HUMAN Integrin alpha-L[580 aa] A 100.0
/99.8
18
/18
ITAL_HUMAN Integrin alpha-L
5e6s[1] A ITAL_HUMAN Integrin alpha-L[579 aa] C 100.0
/99.8
6
/6
ITAL_HUMAN Integrin alpha-L
5e6s[2] E ITAL_HUMAN Integrin alpha-L[580 aa] C 100.0
/99.8
11
/11
ITAL_HUMAN Integrin alpha-L
1lfa[1] B ITAL_HUMAN CD11A[182 aa] A 100.0
/100.0
5
/5
ITAL_HUMAN CD11A
1lfa[1] A ITAL_HUMAN CD11A[183 aa] B 100.0
/100.0
7
/7
ITAL_HUMAN CD11A
1zoo[12] B ITAL_HUMAN LEUKOCYTE ADHESION GLYCOPROTEIN[183 aa] A 100.0
/100.0
20
/20
ITAL_HUMAN LEUKOCYTE ADHESION GLYCOPROTEIN
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
PRECIPITANT
1170 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
3m6f[1] C NO3
NITRATE ION[4 atoms]
A 100.0
/100.0
3
/3
ITAL_HUMAN Integrin alpha-L
3f74[3] D GOL
GLYCEROL[6 atoms]
B 100.0
/99.4
3
/3
ITAL_HUMAN Integrin alpha-L
3f78[1] E GOL
GLYCEROL[6 atoms]
A 100.0
/99.4
4
/4
ITAL_HUMAN Integrin alpha-L
3f78[1] H GOL
GLYCEROL[6 atoms]
B 100.0
/99.4
3
/3
ITAL_HUMAN Integrin alpha-L
3f78[1] J GOL
GLYCEROL[6 atoms]
C 100.0
/99.4
4
/4
ITAL_HUMAN Integrin alpha-L
6bxb[1] G GOL
GLYCEROL[6 atoms]
A 100.0
/99.4
5
/5
ITB3_HUMAN ITAL_HUMAN ITB3_HUMAN Chimera protein of Integrin beta-3 and Integrin al..
6bxf[1] C GOL
GLYCEROL[6 atoms]
A 100.0
/99.4
3
/3
ITB3_HUMAN ITAL_HUMAN ITB3_HUMAN Chimera protein of Integrin beta-3 and Integrin al..
3hi6[1] I SO4
SULFATE ION[5 atoms]
B 100.0
/98.3
1
/1
ITAL_HUMAN Integrin alpha-L
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.