Contact Molecules for Homologous Proteins


[Full Bars]

[SiteTable]


Summary Bars[50 %]


[Back to Search Page]

[Back to HOMCOS]

[SupCon3D]

[help]
seq_id(%): [0] [30] [40] [50] [60] [70] [80] [90] [95] [100]
[show] [download] [help]
PID QueryLength Homolgous Sequence in PDB UniProt Query TITLE
11352 740 3 Q92499(DDX1_HUMAN) RecName: Full=ATP-dependent RNA helicase DDX1; EC=3.6.4.13 ;AltName: Full=DEAD box protein 1;AltName: Full=DEAD box protein retinoblastoma; Short=DBP-RB;
QUERYSEQ
MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWS
TMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAE
QTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNP
KTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEKEAQTSFLHLGYLPNQLFRTF
[BLAST file for PDB] (plain) (bar) (multiple alignment) [BLAST for UniProt: (plain) (bar) (multiple alignment) (PSSM file) ]

UniProt Feature Tables [Q92499(DDX1_HUMAN)]

740
region name description
1-740 CHAIN /note="ATP-dependent RNA helicase DDX1" /id="PRO_0000054986"
2-428 DOMAIN /note="Helicase ATP-binding"
70-247 DOMAIN /note="B30.2/SPRY"
493-681 DOMAIN /note="Helicase C-terminal"
1-525 REGION /note="Necessary for interaction with RELA"
1-448 REGION /note="Interaction with dsRNA"
1-295 REGION /note="Necessary for interaction with HNRNPK"
525-740 REGION /note="Necessary for interaction with HNRNPK"
536-631 REGION /note="Necessary for interaction with replicase polyprotein 1ab nsp14 of IBV"
46-53 BINDING /ligand="ATP" /ligand_id="ChEBI:CHEBI:30616"
1-718 DISORDER predicted by DISOPRED

MONOMER
740
pdb_id a1 identity[%]2 description
8tbx A 100.0 DDX1_HUMAN DDX1_HUMAN ATP-dependent RNA helicase DDX1
4xw3 B 100.0 A3RJH1_HUMAN ATP-dependent RNA helicase DDX1
1.a1:asym_id for the homologue. 2.identity[%]2:sequence identity between the query and the homologue.
COMPOUND
740 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
8tbx[1] B ADP
ADENOSINE-5'-DIPHOSPHATE[27 atoms]
A 100.0
/100.0
15
/15
DDX1_HUMAN DDX1_HUMAN ATP-dependent RNA helicase DDX1
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
METAL
740 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
8tbx[1] C MG
MAGNESIUM ION[1 atoms]
A 100.0
/100.0
3
/3
DDX1_HUMAN DDX1_HUMAN ATP-dependent RNA helicase DDX1
8tbx[1] D ZN
ZINC ION[1 atoms]
A 100.0
/100.0
4
/4
DDX1_HUMAN DDX1_HUMAN ATP-dependent RNA helicase DDX1
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.