Contact Molecules for Homologous Proteins


[Summary Bars]

[SiteTable]


Full Bars[0.0 %]


[Back to Search Page]

[Back to HOMCOS]

[SupCon3D]

[help]
seq_id(%): [0] [30] [40] [50] [60] [70] [80] [90] [95] [100]
[show] [download] [help]
PID QueryLength Homolgous Sequence in PDB UniProt Query TITLE
13966 275 12 P0DTC3(AP3A_SARS2) RecName: Full=ORF3a protein; Short=ORF3a;AltName: Full=Accessory protein 3a;AltName: Full=Protein 3a;AltName: Full=Protein U274;AltName: Full=Protein X1;
QUERYSEQ
MDLFMRIFTIGTVTLKQGEIKDATPSDFVRATATIPIQASLPFGWLIVGVALLAVFQSASKIITLKKRWQLALSKGVHFVCNLLLLFVTVYSHLLLVAAGLEAPFLYLYALVYFLQSINFVRIIMRLWLCWKCRSKNPLLYDANYFLCWH
TNCYDYCIPYNSVTSSIVITSGDGTTSPISEHDYQIGGYTEKWESGVKDCVVLHSYFTSDYYQLYSTQLSTDTGVEHVTFFIYNKIVDEPEEHVQIHTIDGSSGVVNPVMEPIYDEPTTTTSVPL
[BLAST file for PDB] (plain) (bar) (multiple alignment) [BLAST for UniProt: (plain) (bar) (multiple alignment) (PSSM file) ]

UniProt Feature Tables [P0DTC3(AP3A_SARS2)]

275
region name description
1-275 CHAIN /note="ORF3a protein" /id="PRO_0000449650"
1-42 TOPO_DOM /note="Extracellular"
43-61 TRANSMEM /note="Helical"
62-67 TOPO_DOM /note="Cytoplasmic"
68-93 TRANSMEM /note="Helical"
94-101 TOPO_DOM /note="Extracellular"
102-126 TRANSMEM /note="Helical"
127-275 TOPO_DOM /note="Cytoplasmic"
33-141 DOMAIN /note="CoV 3a-like viroporin TM"
145-237 DOMAIN /note="CoV 3a-like viroporin CD"
1-39 REGION /note="Disordered"
239-275 REGION /note="Disordered"
1-275 DISORDER predicted by DISOPRED

MONOMER
275
pdb_id a1 identity[%]2 description
7kjr A 100.0 AP3A_SARS2 ORF3a protein
7kjr B 100.0 AP3A_SARS2 ORF3a protein
6xdc B 100.0 AP3A_SARS2 ORF3a protein
6xdc A 100.0 AP3A_SARS2 ORF3a protein
8eqj A 100.0 AP3A_SARS2 ORF3a protein
8eqj B 100.0 AP3A_SARS2 ORF3a protein
8eqt A 100.0 AP3A_SARS2 ORF3a protein
8eqt B 100.0 AP3A_SARS2 ORF3a protein
8equ A 100.0 AP3A_SARS2 ORF3a protein
8equ B 100.0 AP3A_SARS2 ORF3a protein
8eqs B 76.6 AP3A_SARS ORF3a protein
8eqs A 76.6 AP3A_SARS ORF3a protein
1.a1:asym_id for the homologue. 2.identity[%]2:sequence identity between the query and the homologue.
HETERO
275 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
8equ C SAP_HUMAN Saposin-A[80 aa] A 100.0
/100.0
7
/7
AP3A_SARS2 ORF3a protein
8equ F SAP_HUMAN Saposin-A[80 aa] A 100.0
/100.0
1
/1
AP3A_SARS2 ORF3a protein
8equ C SAP_HUMAN Saposin-A[80 aa] B 100.0
/100.0
1
/1
AP3A_SARS2 ORF3a protein
8equ F SAP_HUMAN Saposin-A[80 aa] B 100.0
/100.0
5
/5
AP3A_SARS2 ORF3a protein
8equ D Saposin A, polyalanine model[79 aa] A 100.0
/100.0
1
/1
AP3A_SARS2 ORF3a protein
8equ G Saposin A, polyalanine model[79 aa] B 100.0
/100.0
1
/1
AP3A_SARS2 ORF3a protein
7kjr C APOA1_HUMAN Apolipoprotein A-I[31 aa] A 100.0
/100.0
6
/6
AP3A_SARS2 ORF3a protein
7kjr D APOA1_HUMAN Apolipoprotein A-I[31 aa] A 100.0
/100.0
6
/6
AP3A_SARS2 ORF3a protein
7kjr C APOA1_HUMAN Apolipoprotein A-I[31 aa] B 100.0
/100.0
5
/5
AP3A_SARS2 ORF3a protein
7kjr D APOA1_HUMAN Apolipoprotein A-I[31 aa] B 100.0
/100.0
6
/6
AP3A_SARS2 ORF3a protein
8eqs C APOA1_HUMAN Apolipoprotein A-I[27 aa] A 66.7
/76.6
3
/3
AP3A_SARS ORF3a protein
8eqs D APOA1_HUMAN Apolipoprotein A-I[27 aa] A 75.0
/76.6
4
/4
AP3A_SARS ORF3a protein
8eqs C APOA1_HUMAN Apolipoprotein A-I[27 aa] B 75.0
/76.6
4
/4
AP3A_SARS ORF3a protein
8eqs D APOA1_HUMAN Apolipoprotein A-I[27 aa] B 66.7
/76.6
3
/3
AP3A_SARS ORF3a protein
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
COMPOUND
275 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
7kjr E PEE
1,2-dioleoyl-sn-glycero-3-phosphoethanolamine[23 a..
A 100.0
/100.0
4
/4
AP3A_SARS2 ORF3a protein
7kjr F PEE
1,2-dioleoyl-sn-glycero-3-phosphoethanolamine[23 a..
A 100.0
/100.0
4
/4
AP3A_SARS2 ORF3a protein
7kjr E PEE
1,2-dioleoyl-sn-glycero-3-phosphoethanolamine[23 a..
B 100.0
/100.0
4
/4
AP3A_SARS2 ORF3a protein
7kjr F PEE
1,2-dioleoyl-sn-glycero-3-phosphoethanolamine[23 a..
B 100.0
/100.0
4
/4
AP3A_SARS2 ORF3a protein
8eqj C PEE
1,2-dioleoyl-sn-glycero-3-phosphoethanolamine[23 a..
A 100.0
/100.0
6
/6
AP3A_SARS2 ORF3a protein
8eqj D PEE
1,2-dioleoyl-sn-glycero-3-phosphoethanolamine[22 a..
A 100.0
/100.0
7
/7
AP3A_SARS2 ORF3a protein
8eqj E PEE
1,2-dioleoyl-sn-glycero-3-phosphoethanolamine[23 a..
A 100.0
/100.0
3
/3
AP3A_SARS2 ORF3a protein
8eqj C PEE
1,2-dioleoyl-sn-glycero-3-phosphoethanolamine[23 a..
B 100.0
/100.0
3
/3
AP3A_SARS2 ORF3a protein
8eqj E PEE
1,2-dioleoyl-sn-glycero-3-phosphoethanolamine[23 a..
B 100.0
/100.0
6
/6
AP3A_SARS2 ORF3a protein
8eqj F PEE
1,2-dioleoyl-sn-glycero-3-phosphoethanolamine[22 a..
B 100.0
/100.0
7
/7
AP3A_SARS2 ORF3a protein
8eqs E PEE
1,2-dioleoyl-sn-glycero-3-phosphoethanolamine[25 a..
A 100.0
/76.6
4
/4
AP3A_SARS ORF3a protein
8eqs F PEE
1,2-dioleoyl-sn-glycero-3-phosphoethanolamine[25 a..
A 50.0
/76.6
4
/4
AP3A_SARS ORF3a protein
8eqs E PEE
1,2-dioleoyl-sn-glycero-3-phosphoethanolamine[25 a..
B 50.0
/76.6
4
/4
AP3A_SARS ORF3a protein
8eqs F PEE
1,2-dioleoyl-sn-glycero-3-phosphoethanolamine[25 a..
B 100.0
/76.6
4
/4
AP3A_SARS ORF3a protein
8eqt C PEE
1,2-dioleoyl-sn-glycero-3-phosphoethanolamine[22 a..
A 100.0
/100.0
7
/7
AP3A_SARS2 ORF3a protein
8eqt D PEE
1,2-dioleoyl-sn-glycero-3-phosphoethanolamine[19 a..
A 100.0
/100.0
4
/4
AP3A_SARS2 ORF3a protein
8eqt E PEE
1,2-dioleoyl-sn-glycero-3-phosphoethanolamine[19 a..
A 100.0
/100.0
2
/2
AP3A_SARS2 ORF3a protein
8eqt D PEE
1,2-dioleoyl-sn-glycero-3-phosphoethanolamine[19 a..
B 100.0
/100.0
2
/2
AP3A_SARS2 ORF3a protein
8eqt E PEE
1,2-dioleoyl-sn-glycero-3-phosphoethanolamine[19 a..
B 100.0
/100.0
4
/4
AP3A_SARS2 ORF3a protein
8eqt F PEE
1,2-dioleoyl-sn-glycero-3-phosphoethanolamine[22 a..
B 100.0
/100.0
7
/7
AP3A_SARS2 ORF3a protein
8equ I PEE
1,2-dioleoyl-sn-glycero-3-phosphoethanolamine[23 a..
A 100.0
/100.0
5
/5
AP3A_SARS2 ORF3a protein
8equ J PEE
1,2-dioleoyl-sn-glycero-3-phosphoethanolamine[23 a..
A 100.0
/100.0
1
/1
AP3A_SARS2 ORF3a protein
8equ I PEE
1,2-dioleoyl-sn-glycero-3-phosphoethanolamine[23 a..
B 100.0
/100.0
1
/1
AP3A_SARS2 ORF3a protein
8equ J PEE
1,2-dioleoyl-sn-glycero-3-phosphoethanolamine[23 a..
B 100.0
/100.0
5
/5
AP3A_SARS2 ORF3a protein
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
HOMO
275 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
6xdc B AP3A_SARS2 ORF3a protein[193 aa] A 100.0
/100.0
42
/42
AP3A_SARS2 ORF3a protein
6xdc A AP3A_SARS2 ORF3a protein[193 aa] B 100.0
/100.0
43
/43
AP3A_SARS2 ORF3a protein
7kjr B AP3A_SARS2 ORF3a protein[193 aa] A 100.0
/100.0
54
/54
AP3A_SARS2 ORF3a protein
7kjr A AP3A_SARS2 ORF3a protein[193 aa] B 100.0
/100.0
55
/55
AP3A_SARS2 ORF3a protein
8eqj B AP3A_SARS2 ORF3a protein[192 aa] A 100.0
/100.0
48
/48
AP3A_SARS2 ORF3a protein
8eqj A AP3A_SARS2 ORF3a protein[192 aa] B 100.0
/100.0
48
/48
AP3A_SARS2 ORF3a protein
8eqt B AP3A_SARS2 ORF3a protein[191 aa] A 100.0
/100.0
44
/44
AP3A_SARS2 ORF3a protein
8eqt A AP3A_SARS2 ORF3a protein[191 aa] B 100.0
/100.0
44
/44
AP3A_SARS2 ORF3a protein
8equ B AP3A_SARS2 ORF3a protein[191 aa] A 100.0
/100.0
48
/48
AP3A_SARS2 ORF3a protein
8equ A AP3A_SARS2 ORF3a protein[191 aa] B 100.0
/100.0
49
/49
AP3A_SARS2 ORF3a protein
8eqs B AP3A_SARS ORF3a protein[192 aa] A 83.3
/76.6
48
/48
AP3A_SARS ORF3a protein
8eqs A AP3A_SARS ORF3a protein[192 aa] B 83.3
/76.6
48
/48
AP3A_SARS ORF3a protein
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.