Contact Molecules for Homologous Proteins

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PID QueryLength Homolgous Sequence in PDB UniProt Query TITLE
866797 364 10 Q9Y397(ZDHC9_HUMAN) RecName: Full=Palmitoyltransferase ZDHHC9; EC=2.3.1.225 ;AltName: Full=Zinc finger DHHC domain-containing protein 9; Short=DHHC-9; Short=DHHC9;AltName: Full=Zinc finger protein 379;AltName: Full=Zinc finger protein 380;
QUERYSEQ 
MSVMVVRKKVTRKWEKLPGRNTFCCDGRVMMARQKGIFYLTLFLILGTCTLFFAFECRYLAVQLSPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAFIEMEIEATNGAVPQGQRPPPRIKNFQINNQIVKLKYCYTCKIFRPP
RASHCSICDNCVERFDHHCPWVGNCVGKRNYRYFYLFILSLSLLTIYVFAFNIVYVALKSLKIGFLETLKETPGTVLEVLICFFTLWSVVGLTGFHTFLVALNQTTNEDIKGSWTGKNRVQNPYSHGNIVKNCCEVLCGPLPPSVLDRRG
ILPLEESGSRPPSTQETSSSLLPQSPAPTEHLNSNEMPEDSSTPEEMPPPEPPEPPQEAAEAEK
[BLAST file for PDB] (plain) (bar) (multiple alignment) [BLAST for UniProt: (plain) (bar) (multiple alignment) (PSSM file) ]

UniProt Feature Tables [Q9Y397(ZDHC9_HUMAN)]

364
region name description
1-364 CHAIN /note="Palmitoyltransferase ZDHHC9" /id="PRO_0000212880"
1-35 TOPO_DOM /note="Cytoplasmic"
36-56 TRANSMEM /note="Helical"
57-63 TOPO_DOM /note="Lumenal"
64-84 TRANSMEM /note="Helical"
85-183 TOPO_DOM /note="Cytoplasmic"
184-204 TRANSMEM /note="Helical"
205-228 TOPO_DOM /note="Lumenal"
229-249 TRANSMEM /note="Helical"
250-364 TOPO_DOM /note="Cytoplasmic"
139-189 DOMAIN /note="DHHC"
303-364 REGION /note="Disordered"
308-341 COMPBIAS /note="Polar residues"
169-169 ACT_SITE /note="S-palmitoyl cysteine intermediate"
1-364 DISORDER predicted by DISOPRED

MONOMER
364
pdb_id a1 identity[%]2 description
6bms A 38.6 F1QXD3_DANRE Palmitoyltransferase 
1.a1:asym_id for the homologue. 2.identity[%]2:sequence identity between the query and the homologue.
COMPOUND
364 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
6bml[2] J PAP
3'-PHOSPHATE-ADENOSINE-5'-DIPHOSPHATE[31 atoms] 		B 33.3
/41.2		 6
/6		 ZDH20_HUMAN human DHHC20 palmitoyltransferase
6bmm[1] K DYD
(2S,5S)-hexane-2,5-diol[8 atoms] 		A 50.0
/40.7		 2
/2		 ZDH20_HUMAN human DHHC20 palmitoyltransferase
6bmm[1] P DYD
(2S,5S)-hexane-2,5-diol[8 atoms] 		B 0.0
/40.7		 1
/6		 ZDH20_HUMAN human DHHC20 palmitoyltransferase
7khm[2] E PKZ
Palmitoyl-CoA[65 atoms] 		A 57.1
/40.3		 14
/16		 ZDH20_HUMAN Isoform 4 of Palmitoyltransferase ZDHHC20
7khm[1] E PKZ
Palmitoyl-CoA[65 atoms] 		B 16.7
/40.3		 6
/6		 ZDH20_HUMAN Isoform 4 of Palmitoyltransferase ZDHHC20
6bms[1] I POV
(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoylox.. 		A 40.0
/38.6		 5
/8		 F1QXD3_DANRE Palmitoyltransferase
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
METAL
364 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
6bml[4] C ZN
ZINC ION[1 atoms] 		A 100.0
/41.2		 4
/4		 ZDH20_HUMAN human DHHC20 palmitoyltransferase
6bml[4] D ZN
ZINC ION[1 atoms] 		A 100.0
/41.2		 4
/4		 ZDH20_HUMAN human DHHC20 palmitoyltransferase
6bmm[2] C ZN
ZINC ION[1 atoms] 		A 100.0
/40.7		 4
/4		 ZDH20_HUMAN human DHHC20 palmitoyltransferase
6bmm[2] D ZN
ZINC ION[1 atoms] 		A 80.0
/40.7		 5
/5		 ZDH20_HUMAN human DHHC20 palmitoyltransferase
6bms[2] C ZN
ZINC ION[1 atoms] 		A 80.0
/38.6		 5
/5		 F1QXD3_DANRE Palmitoyltransferase
6bms[2] D ZN
ZINC ION[1 atoms] 		A 100.0
/38.6		 4
/4		 F1QXD3_DANRE Palmitoyltransferase
7khm[2] C ZN
ZINC ION[1 atoms] 		A 100.0
/40.3		 4
/4		 ZDH20_HUMAN Isoform 4 of Palmitoyltransferase ZDHHC20
7khm[2] D ZN
ZINC ION[1 atoms] 		A 100.0
/40.3		 4
/4		 ZDH20_HUMAN Isoform 4 of Palmitoyltransferase ZDHHC20
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
HOMO
364 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
6bmm[1] A ZDH20_HUMAN human DHHC20 palmitoyltransferase[290 aa] B 0.0
/40.7		 1
/2		 ZDH20_HUMAN human DHHC20 palmitoyltransferase
7khm[1] B ZDH20_HUMAN Isoform 4 of Palmitoyltransferase ZDHHC20[287 aa] A 20.0
/40.3		 5
/7		 ZDH20_HUMAN Isoform 4 of Palmitoyltransferase ZDHHC20
7khm[1] A ZDH20_HUMAN Isoform 4 of Palmitoyltransferase ZDHHC20[290 aa] B 25.0
/40.3		 4
/7		 ZDH20_HUMAN Isoform 4 of Palmitoyltransferase ZDHHC20
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
PRECIPITANT
364 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
6bmm[2] F OLB
(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate[25 .. 		A 54.5
/40.7		 11
/13		 ZDH20_HUMAN human DHHC20 palmitoyltransferase
6bml[5] F PO4
PHOSPHATE ION[5 atoms] 		A 33.3
/41.2		 3
/3		 ZDH20_HUMAN human DHHC20 palmitoyltransferase
6bmm[5] E PO4
PHOSPHATE ION[5 atoms] 		A 33.3
/40.7		 3
/3		 ZDH20_HUMAN human DHHC20 palmitoyltransferase
7khm[1] F PO4
PHOSPHATE ION[5 atoms] 		A 0.0
/40.3		 3
/3		 ZDH20_HUMAN Isoform 4 of Palmitoyltransferase ZDHHC20
6bml[2] E PLM
PALMITIC ACID[18 atoms] 		A 75.0
/41.2		 8
/13		 ZDH20_HUMAN human DHHC20 palmitoyltransferase
6bms[2] H PLM
PALMITIC ACID[18 atoms] 		A 46.2
/38.6		 13
/17		 F1QXD3_DANRE Palmitoyltransferase
6bms[1] E LMT
DODECYL-BETA-D-MALTOSIDE[31 atoms] 		A 50.0
/38.6		 4
/5		 F1QXD3_DANRE Palmitoyltransferase
6bms[3] F LMT
DODECYL-BETA-D-MALTOSIDE[28 atoms] 		A 0.0
/38.6		 4
/4		 F1QXD3_DANRE Palmitoyltransferase
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.