Contact Molecules for Homologous Proteins

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PID QueryLength Homolgous Sequence in PDB UniProt Query TITLE
1681869 1025 297 Q9BYX4(IFIH1_HUMAN) RecName: Full=Interferon-induced helicase C domain-containing protein 1 ; EC=3.6.4.13 ;AltName: Full=Clinically amyopathic dermatomyositis autoantigen 140 kDa; Short=CADM-140 autoantigen;AltName: Full=Helicase with 2 CARD domains; Short=Helicard;AltName: Full=Interferon-induced with helicase C domain protein 1;AltName: Full=Melanoma differentiation-associated protein 5; Short=MDA-5;AltName: Full=Murabutide down-regulated protein;AltName: Full=RIG-I-like receptor 2; Short=RLR-2;AltName: Full=RNA helicase-DEAD box protein 116;
QUERYSEQ 
MSNGYSTDENFRYLISCFRARVKMYIQVEPVLDYLTFLPAEVKEQIQRTVATSGNMQAVELLLSTLEKGVWHLGWTREFVEALRRTGSPLAARYMNPELTDLPSPSFENAHDEYLQLLNLLQPTLVDKLLVRDVLDKCMEEELLTIEDRN
RIAAAENNGNESGVRELLKRIVQKENWFSAFLNVLRQTGNNELVQELTGSDCSESNAEIENLSQVDGPQVEEQLLSTTVQPNLEKEVWGMENNSSESSFADSSVVSESDTSLAEGSVSCLDESLGHNSNMGSDSGTMGSDSDEENVAARA
SPEPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNK
EAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVC
AEHLRKYNEALQINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDSDEGGDDEYCDGDEDEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVK
AHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADESTYVLVAHSGSGVIEHETVNDFREKMMYKAIHCVQNMKPEEYAHKILELQMQSIMEKKMKTKRNIAKHYKNNP
SLITFLCKNCSVLACSGEDIHVIEKMHHVNMTPEFKELYIVRENKALQKKCADYQINGEIICKCGQAWGTMMVHKGLDLPCLKIRNFVVVFKNNSTKKQYKKWVELPITFPNLDYSECCLFSDED
[BLAST file for PDB] (plain) (bar) (multiple alignment) [BLAST for UniProt: (plain) (bar) (multiple alignment) (PSSM file) ]

UniProt Feature Tables [Q9BYX4(IFIH1_HUMAN)]

1025
region name description
1-1025 CHAIN /note="Interferon-induced helicase C domain-containing protein 1" /id="PRO_0000102012"
7-97 DOMAIN /note="CARD 1"
110-190 DOMAIN /note="CARD 2"
316-509 DOMAIN /note="Helicase ATP-binding"
700-882 DOMAIN /note="Helicase C-terminal"
893-1020 DOMAIN /note="RLR CTR"
271-307 REGION /note="Disordered"
640-662 REGION /note="Disordered"
271-291 COMPBIAS /note="Polar residues"
644-659 COMPBIAS /note="Acidic residues"
907-907 BINDING /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105"
910-910 BINDING /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105"
962-962 BINDING /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105"
964-964 BINDING /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105"
1-1025 DISORDER predicted by DISOPRED

MONOMER
1025
pdb_id a1 identity[%]2 description
7jl0 C 99.7 IFIH1_HUMAN Interferon-induced helicase C domain-containing protein 1
7dni E 100.0 IFIH1_HUMAN Interferon-induced helicase C domain-containing protein 1
3b6e A 100.0 IFIH1_HUMAN Interferon-induced helicase C domain-containing protein 1 
1.a1:asym_id for the homologue. 2.identity[%]2:sequence identity between the query and the homologue.
HETERO
1025 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
7dni[2] B UBB_HUMAN Ubiquitin[73 aa] E 100.0
/100.0		 6
/6		 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..
7dni[8] I UBB_HUMAN Ubiquitin[72 aa] E 100.0
/100.0		 22
/22		 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..
7dni[8] J UBB_HUMAN Ubiquitin[74 aa] E 100.0
/100.0		 10
/10		 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..
7dni[8] L UBB_HUMAN Ubiquitin[73 aa] E 100.0
/100.0		 13
/13		 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..
7dni[7] M MAVS_HUMAN Mitochondrial antiviral-signaling protein[97 aa] E 100.0
/100.0		 9
/9		 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..
7dni[1] M MAVS_HUMAN Mitochondrial antiviral-signaling protein[97 aa] H 100.0
/100.0		 6
/6		 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..
7jl0[4] D TRI65_HUMAN Tripartite motif-containing protein 65[180 aa] C 100.0
/99.7		 11
/11		 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..
4i1s[1] B V_SV5 Non-structural protein V[52 aa] A 100.0
/87.8		 26
/26		 A7LCX1_PIG A7LCX1_PIG Melanoma differentiation associated protein-5
7jl1[4] D RN135_HUMAN E3 ubiquitin-protein ligase RNF135[171 aa] A 20.0
/41.0		 10
/10		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
7jl3[2] D RN135_HUMAN E3 ubiquitin-protein ligase RNF135[169 aa] A 0.0
/41.4		 1
/1		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
5m52[2] B PRP8_YEAST Pre-mRNA-splicing factor 8[266 aa] A 28.6
/37.9		 7
/60		 BRR2_YEAST Pre-mRNA-splicing helicase BRR2
5gm6[2] A PRP8_YEAST Pre-mRNA-splicing factor 8[2200 aa] B 33.3
/37.9		 6
/52		 BRR2_YEAST Pre-mRNA-splicing helicase BRR2
5gm6[2] F RSE1_YEAST Pre-mRNA-splicing factor RSE1[1180 aa] B 50.0
/37.9		 2
/18		 BRR2_YEAST Pre-mRNA-splicing helicase BRR2
7w0b[2] B M9MRT5_DROME Loquacious, isoform D[16 aa] A 0.0
/36.3		 1
/26		 A1ZAW0_DROME Dicer-2, isoform A
8hf1[1] B M9MRT5_DROME Loquacious, isoform D[16 aa] A 0.0
/36.3		 1
/23		 A1ZAW0_DROME Dicer-2, isoform A
8hf1[1] C Q9VLW8_DROME LD06392p[126 aa] D 0.0
/36.3		 1
/12		 A1ZAW0_DROME Dicer-2, isoform A
6zmw[1] EB IF4G1_HUMAN Eukaryotic translation initiation factor 4 gamma 1.. DB 12.5
/33.8		 8
/22		 IF4A1_HUMAN Eukaryotic initiation factor 4A-I
6zmw[1] U EIF3L_HUMAN Eukaryotic translation initiation factor 3 subunit.. DB 33.3
/33.8		 3
/5		 IF4A1_HUMAN Eukaryotic initiation factor 4A-I
7pq0[1] A Q63UP7_BURPS Burkholderia Lethal Factor 1 (BLF1)[210 aa] B 25.0
/33.8		 12
/31		 IF4A1_HUMAN Eukaryotic initiation factor 4A-I
8huj[1] B IF4G1_HUMAN Eukaryotic translation initiation factor 4 gamma 1.. A 12.5
/33.8		 8
/22		 IF4A1_HUMAN Eukaryotic initiation factor 4A-I
5nt7[2] B OSKA_DROME Maternal effect protein oskar[92 aa] A 17.4
/32.7		 23
/23		 VASA1_DROME ATP-dependent RNA helicase vasa, isoform A
2zu6[1] B PDCD4_HUMAN Programmed cell death protein 4[284 aa] C 50.0
/32.7		 12
/25		 IF4A1_HUMAN Eukaryotic initiation factor 4A-I
2d7d[2] C UVRB_BACSU 40-mer from UvrABC system protein B[38 aa] B 0.0
/32.2		 1
/8		 UVRB_BACSU UvrABC system protein B
2vso[4] C IF4F1_YEAST EUKARYOTIC INITIATION FACTOR 4F SUBUNIT P150[239 a.. A 30.0
/30.9		 20
/30		 IF4A_YEAST ATP-DEPENDENT RNA HELICASE EIF4A
2hyi[12] C MGN_HUMAN Protein mago nashi homolog[144 aa] E 33.3
/29.3		 6
/33		 DDX48_HUMAN Probable ATP-dependent RNA helicase DDX48
6qdv[7] F MGN2_HUMAN Protein mago nashi homolog 2[144 aa] D 33.3
/29.3		 6
/33		 IF4A3_HUMAN Eukaryotic initiation factor 4A-III
2hyi[9] F CASC3_HUMAN Protein CASC3[56 aa] E 30.8
/29.3		 13
/41		 DDX48_HUMAN Probable ATP-dependent RNA helicase DDX48
2hyi[3] H RBM8A_HUMAN RNA-binding protein 8A[91 aa] I 100.0
/29.3		 1
/2		 DDX48_HUMAN Probable ATP-dependent RNA helicase DDX48
2j0q[3] D RBM8A_HUMAN RNA-BINDING PROTEIN 8A[89 aa] A 100.0
/29.3		 1
/3		 DDX48_HUMAN ATP-DEPENDENT RNA HELICASE DDX48
2xb2[1] F REN3B_HUMAN REGULATOR OF NONSENSE TRANSCRIPTS 3B[15 aa] A 0.0
/29.3		 6
/11		 IF4A3_HUMAN EUKARYOTIC INITIATION FACTOR 4A-III
2xb2[1] J REN3B_HUMAN REGULATOR OF NONSENSE TRANSCRIPTS 3B[17 aa] K 0.0
/29.3		 5
/9		 IF4A3_HUMAN EUKARYOTIC INITIATION FACTOR 4A-III
4c9b[1] B CWC22_HUMAN PRE-MRNA-SPLICING FACTOR CWC22 HOMOLOG[277 aa] A 20.8
/29.8		 24
/39		 IF4A3_HUMAN EUKARYOTIC INITIATION FACTOR 4A-III
6yvh[2] A CWC22_HUMAN Pre-mRNA-splicing factor CWC22 homolog[274 aa] F 15.8
/30.9		 19
/23		 IF4A3_HUMAN Eukaryotic initiation factor 4A-III
6yvh[1] E CWC22_HUMAN Pre-mRNA-splicing factor CWC22 homolog[272 aa] F 33.3
/30.9		 9
/12		 IF4A3_HUMAN Eukaryotic initiation factor 4A-III
7a5p[1] S CWC22_HUMAN Pre-mRNA-splicing factor CWC22 homolog[253 aa] UA 0.0
/29.3		 2
/2		 IF4A3_HUMAN Eukaryotic initiation factor 4A-III
5xjc[3] V CWC22_HUMAN Pre-mRNA-splicing factor CWC22 homolog[452 aa] UA 0.0
/29.3		 4
/11		 IF4A3_HUMAN Eukaryotic initiation factor 4A-III
6icz[4] V CWC22_HUMAN Pre-mRNA-splicing factor CWC22 homolog[452 aa] C 0.0
/29.3		 1
/1		 IF4A3_HUMAN Eukaryotic initiation factor 4A-III
6qdv[1] N CWC22_HUMAN Pre-mRNA-splicing factor CWC22 homolog[459 aa] D 0.0
/29.3		 4
/11		 IF4A3_HUMAN Eukaryotic initiation factor 4A-III
5xjc[6] XA CASC3_HUMAN Protein CASC3[25 aa] UA 30.8
/29.3		 13
/18		 IF4A3_HUMAN Eukaryotic initiation factor 4A-III
2yjt[1] A D8AM26_ECOLX REGULATOR OF RIBONUCLEASE ACTIVITY A[158 aa] D 21.4
/29.0		 14
/17		 SRMB_ECOLI ATP-DEPENDENT RNA HELICASE SRMB
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
NUCLEOTIDE
1025 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
7jl2[3] A RNA (44-MER) C 92.9
/99.7		 14
/14		 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..
7jl2[3] B RNA (44-MER) C 100.0
/99.7		 21
/21		 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..
4gl2[2] C RNA (5'-R(*AP*UP*CP*CP*GP*CP*GP*GP*CP*CP*CP*U)-3').. A 92.9
/99.7		 14
/14		 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..
4gl2[2] F RNA (5'-R(P*AP*GP*GP*GP*CP*CP*GP*CP*GP*GP*AP*U)-3'.. A 100.0
/99.7		 29
/29		 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..
6g1s[1] B RNA (5'-R(P*UP*CP*CP*AP*UP*GP*CP*GP*CP*AP*UP*GP*AP.. A 86.7
/87.0		 15
/15		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
6g1x[1] B RNA (5'-R(P*UP*CP*CP*AP*UP*GP*CP*GP*CP*AP*UP*GP*AP.. A 81.8
/87.3		 11
/11		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
6h61[3] B RNA (5'-R(P*UP*CP*CP*AP*UP*GP*CP*GP*CP*AP*UP*GP*AP.. A 86.7
/87.0		 15
/15		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
7bkq[2] B RNA (5'-R(P*UP*CP*CP*AP*UP*GP*CP*GP*CP*AP*UP*GP*AP.. A 83.3
/87.2		 12
/12		 IFIH1_MOUSE Isoform 2 of Interferon-induced helicase C domain-..
7bkq[1] B RNA (5'-R(P*UP*CP*CP*AP*UP*GP*CP*GP*CP*AP*UP*GP*AP.. A 50.0
/87.2		 2
/2		 IFIH1_MOUSE Isoform 2 of Interferon-induced helicase C domain-..
7bkq[1] B RNA (5'-R(P*UP*CP*CP*AP*UP*GP*CP*GP*CP*AP*UP*GP*AP.. A 100.0
/87.2		 2
/2		 IFIH1_MOUSE Isoform 2 of Interferon-induced helicase C domain-..
6g1s[1] C RNA (5'-R(P*CP*GP*UP*CP*AP*UP*GP*CP*GP*CP*AP*UP*GP.. A 100.0
/87.0		 26
/26		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
6g1x[3] C RNA (5'-R(P*CP*GP*UP*CP*AP*UP*GP*CP*GP*CP*AP*UP*GP.. A 100.0
/87.3		 25
/25		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
6h61[3] C RNA (5'-R(P*CP*GP*UP*CP*AP*UP*GP*CP*GP*CP*AP*UP*GP.. A 100.0
/87.0		 27
/27		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
7bkq[1] C RNA (5'-R(P*CP*GP*UP*CP*AP*UP*GP*CP*GP*CP*AP*UP*GP.. A 0.0
/87.2		 1
/1		 IFIH1_MOUSE Isoform 2 of Interferon-induced helicase C domain-..
6g19[1] B RNA (5'-R(P*CP*AP*AP*GP*CP*CP*GP*AP*GP*GP*AP*GP*AP.. A 85.7
/87.4		 21
/21		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
6gjz[2] B RNA (5'-R(P*CP*AP*AP*GP*CP*CP*GP*AP*GP*GP*AP*GP*AP.. A 85.7
/87.4		 21
/21		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
7bkp[1] C RNA (5'-R(P*CP*AP*AP*GP*CP*CP*GP*AP*GP*GP*AP*GP*AP.. A 90.0
/87.2		 20
/20		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
6g19[1] C RNA (5'-R(P*CP*UP*CP*UP*CP*CP*UP*CP*GP*GP*CP*UP*UP.. A 100.0
/87.4		 29
/29		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
6gjz[3] C RNA (5'-R(P*CP*UP*CP*UP*CP*CP*UP*CP*GP*GP*CP*UP*UP.. A 100.0
/87.4		 30
/30		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
7niq[1] B RNA (5'-R(P*CP*AP*AP*GP*CP*CP*GP*AP*GP*GP*AP*GP*AP.. A 83.3
/87.1		 18
/18		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
7niq[1] C RNA (5'-R(P*AP*UP*CP*UP*CP*CP*UP*CP*GP*GP*CP*UP*UP.. A 100.0
/87.1		 22
/22		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
6gkh[1] B RNA (5'-R(P*GP*UP*CP*AP*AP*GP*CP*CP*GP*AP*GP*GP*AP.. A 93.3
/87.2		 15
/15		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
7nic[1] B RNA (5'-R(P*GP*UP*CP*AP*AP*GP*CP*CP*GP*AP*GP*GP*AP.. A 84.2
/87.0		 19
/19		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
6gkh[2] C RNA (5'-R(P*UP*CP*UP*CP*CP*UP*CP*GP*GP*CP*UP*UP*GP.. A 100.0
/87.2		 26
/26		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
5jc7[1] C RNA (5'-R(P*GP*GP*AP*CP*GP*UP*CP*AP*UP*GP*CP*GP*CP.. A 75.0
/73.6		 20
/20		 D9N195_CHICK Melanoma differentiation associated protein-5
5jc7[1] C RNA (5'-R(P*GP*GP*AP*CP*GP*UP*CP*AP*UP*GP*CP*GP*CP.. B 93.3
/73.9		 30
/30		 D9N195_CHICK Melanoma differentiation associated protein-5
5jc7[1] D RNA (5'-R(P*GP*GP*GP*AP*CP*GP*UP*CP*AP*UP*GP*CP*GP.. A 96.8
/73.6		 31
/31		 D9N195_CHICK Melanoma differentiation associated protein-5
5jc7[1] D RNA (5'-R(P*GP*GP*GP*AP*CP*GP*UP*CP*AP*UP*GP*CP*GP.. B 73.7
/73.9		 19
/19		 D9N195_CHICK Melanoma differentiation associated protein-5
5jaj[1] C RNA (5'-R(P*GP*GP*UP*AP*CP*GP*UP*AP*CP*C)-3') A 70.3
/47.8		 37
/37		 G0YYQ5_CHICK LGP2
5jc3[6] B RNA (5'-R(P*GP*GP*UP*AP*CP*GP*UP*AP*CP*C)-3') A 75.0
/72.8		 20
/20		 D9N195_CHICK Melanoma differentiation associated protein-5
5jc3[5] C RNA (5'-R(P*GP*GP*UP*AP*CP*GP*UP*AP*CP*C)-3') A 93.3
/72.8		 30
/30		 D9N195_CHICK Melanoma differentiation associated protein-5
5jcf[1] C RNA (5'-R(P*AP*GP*GP*UP*AP*CP*GP*UP*AP*CP*C)-3') A 96.6
/72.8		 29
/29		 D9N195_CHICK Melanoma differentiation associated protein-5
5jbj[1] B RNA (5'-R(P*GP*GP*UP*AP*GP*CP*GP*CP*UP*AP*CP*C)-3'.. A 53.8
/48.8		 26
/26		 G0YYQ5_CHICK LGP2
5jbj[1] C RNA (5'-R(P*GP*GP*UP*AP*GP*CP*GP*CP*UP*AP*CP*C)-3'.. A 70.6
/48.8		 34
/34		 G0YYQ5_CHICK LGP2
5jaj[1] B RNA (5'-R(P*GP*GP*UP*AP*CP*GP*UP*AP*CP*CP*C)-3') A 46.2
/47.8		 26
/26		 G0YYQ5_CHICK LGP2
5jbg[1] B RNA (5'-R(*GPPP*GP*AP*GP*CP*GP*UP*GP*CP*CP*GP*GP*G.. A 52.2
/47.5		 67
/67		 G0YYQ5_CHICK LGP2
5jb2[1] B RNA (5'-R(*GPPP*GP*UP*AP*CP*GP*UP*AP*CP*CP*C)-3') .. A 46.2
/47.0		 26
/26		 G0YYQ5_CHICK LGP2
5jb2[1] C RNA (5'-R(*GPPP*GP*UP*AP*CP*GP*UP*AP*CP*C)-3') A 69.4
/47.0		 36
/36		 G0YYQ5_CHICK LGP2
5f9h[6] B RNA (5'-R(P*AP*AP*UP*AP*UP*AP*AP*UP*AP*GP*UP*GP*AP.. A 63.9
/41.7		 36
/37		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5e3h[1] B RNA (5'-R(*CP*GP*AP*CP*GP*CP*UP*AP*GP*CP*GP*U)-3').. A 50.0
/41.8		 18
/18		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5e3h[1] C RNA (5'-R(*CP*GP*AP*CP*GP*CP*UP*AP*GP*CP*GP*U)-3').. A 63.0
/41.8		 27
/27		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
4a36[1] C 5'-R(*GP*CP*AP*UP*GP*CP*GP*AP*CP*CP*UP*CP*UP*GP *U.. A 14.3
/41.5		 7
/7		 D3TI84_ANAPL RETINOIC ACID INDUCIBLE PROTEIN I
4a36[1] D 5'-R(*UP*CP*AP*AP*AP*CP*AP*GP*AP*GP*GP*UP*CP*GP *C.. A 62.5
/41.5		 24
/24		 D3TI84_ANAPL RETINOIC ACID INDUCIBLE PROTEIN I
7jl3[3] G dsRNA strand1 A 46.2
/41.4		 13
/14		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
7jl3[3] H dsRNA strand 2 A 70.8
/41.4		 24
/24		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
6kyv[6] A RNA (5'-R(*GP*GP*UP*AP*GP*AP*CP*GP*CP*UP*UP*CP*GP*.. B 54.3
/41.0		 46
/46		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
4a36[1] E 5'-R(*GP*CP*AP*UP*GP*CP*GP*AP*CP*CP*UP*CP*UP*GP *U.. B 14.3
/41.0		 7
/7		 D3TI84_ANAPL RETINOIC ACID INDUCIBLE PROTEIN I
4a36[1] F 5'-R(*UP*CP*AP*AP*AP*CP*AP*GP*AP*GP*GP*UP*CP*GP *C.. B 64.0
/41.0		 25
/25		 D3TI84_ANAPL RETINOIC ACID INDUCIBLE PROTEIN I
7jl0[1] A RNA (5'-R(P*GP*AP*CP*UP*GP*AP*CP*UP*GP*AP*CP*UP*GP.. C 90.9
/99.7		 11
/11		 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..
7jl1[1] B dsRNA strand 1 A 37.5
/41.0		 16
/17		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
7jl0[1] B RNA (5'-R(P*UP*CP*AP*GP*UP*CP*AP*GP*UP*CP*AP*GP*UP.. C 100.0
/99.7		 21
/21		 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..
7jl1[1] C dsRNA strand 2 A 66.7
/41.0		 27
/27		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
8dvu[1] B OHSLR30 A 50.0
/40.8		 54
/55		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
7to2[1] B p3SLR30 A 50.0
/40.7		 56
/57		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
6gpg[1] A RNA (5'-R(*CP*GP*AP*CP*GP*CP*UP*AP*GP*CP*GP*UP*CP*.. C 47.4
/40.7		 19
/19		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
6gpg[1] B RNA (5'-R(*CP*GP*AP*CP*GP*CP*UP*AP*GP*CP*GP*UP*CP*.. C 67.9
/40.7		 28
/29		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
4ay2[1] B 5'-R-PPP(GP*GP*CP*GP*CP*GP*GP*CP*UP*UP*CP*GP*GP*CP.. A 40.0
/40.6		 30
/31		 DDX58_HUMAN PROBABLE ATP-DEPENDENT RNA HELICASE DDX58
7tnx[1] B p3dsRNAa A 39.1
/40.4		 23
/24		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
7tnx[1] C p3dsRNAb A 66.7
/40.4		 21
/21		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
2ykg[4] B 5'-R(*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP)-3' A 33.3
/40.5		 15
/16		 DDX58_HUMAN PROBABLE ATP-DEPENDENT RNA HELICASE DDX58
2ykg[4] C 5'-R(*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP)-3' A 50.0
/40.5		 16
/16		 DDX58_HUMAN PROBABLE ATP-DEPENDENT RNA HELICASE DDX58
5f98[12] B RNA (5'-R(P*GP*AP*AP*UP*AP*UP*AP*AP*UP*AP*GP*UP*GP.. A 60.5
/40.7		 38
/40		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
7tny[2] B p2dsRNA A 36.0
/40.4		 25
/26		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
7tny[2] C p2dsRNA A 65.5
/40.4		 29
/29		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
7to0[1] B OHdsRNA A 38.5
/40.1		 26
/27		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
7to0[1] C OHdsRNA A 67.9
/40.1		 28
/28		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
8dvs[1] B OHSLR30 A 54.3
/40.1		 46
/48		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
7yym[3] B 59-nt precursor of miR-15a A 0.0
/40.1		 1
/15		 DICER_MOUSE Endoribonuclease Dicer
7to1[1] B p3SLR30 A 60.0
/40.0		 40
/41		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
8dvr[1] B p3SLR30 A 62.5
/40.0		 32
/33		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
5zal[1] C RNA (73-mer) A 40.0
/39.8		 5
/31		 DICER_HUMAN Endoribonuclease Dicer
5zam[1] C RNA (73-mer) A 0.0
/39.8		 2
/27		 DICER_HUMAN Endoribonuclease Dicer
6bu9[1] B RNA (5'-R(*GP*GP*AP*GP*GP*UP*AP*GP*UP*AP*GP*GP*UP*.. A 100.0
/38.4		 1
/1		 A1ZAW0_DROME Dicer-2, isoform A
5gan[1] A U4 snRNA I 33.3
/37.9		 15
/60		 BRR2_YEAST Pre-mRNA-splicing helicase BRR2
5gao[1] J Saccharomyces cerevisiae strain UOA_M2 chromosome .. I 33.3
/37.9		 15
/59		 BRR2_YEAST Pre-mRNA-splicing helicase BRR2
5nrl[1] C U4 snRNA I 36.4
/37.9		 11
/51		 BRR2_YEAST Pre-mRNA-splicing helicase BRR2
5zwm[1] Q U4 snRNA AA 36.4
/37.9		 11
/49		 BRR2_YEAST Pre-mRNA-splicing helicase BRR2
5zwo[1] Z U4 snRNA AA 50.0
/37.9		 8
/31		 BRR2_YEAST Pre-mRNA-splicing helicase BRR2
7v6c[1] C RNA (5'-R(P*UP*GP*AP*GP*G)-3') A 0.0
/36.5		 3
/5		 A1ZAW0_DROME Dicer-2, isoform A
7v6c[1] D RNA (5'-R(P*CP*CP*UP*CP*UP*CP*U)-3') A 75.0
/36.5		 8
/8		 A1ZAW0_DROME Dicer-2, isoform A
7w0a[2] C RNA (30-MER) A 0.0
/36.3		 5
/17		 A1ZAW0_DROME Dicer-2, isoform A
7w0a[2] D RNA (32-MER) A 58.3
/36.3		 12
/29		 A1ZAW0_DROME Dicer-2, isoform A
7w0c[1] C RNA (35-MER) A 0.0
/36.3		 6
/20		 A1ZAW0_DROME Dicer-2, isoform A
7w0c[1] D RNA (35-MER) A 61.5
/36.3		 13
/29		 A1ZAW0_DROME Dicer-2, isoform A
7w0d[2] B dsRNA D 58.3
/36.3		 12
/37		 A1ZAW0_DROME Dicer-2, isoform A
7w0d[2] F dsRNA D 0.0
/36.3		 5
/22		 A1ZAW0_DROME Dicer-2, isoform A
7w0e[1] A dsRNA C 0.0
/36.3		 5
/38		 A1ZAW0_DROME Dicer-2, isoform A
7w0e[1] B dsRNA C 60.0
/36.3		 10
/61		 A1ZAW0_DROME Dicer-2, isoform A
7w0f[1] E siRNA A 0.0
/36.3		 6
/19		 A1ZAW0_DROME Dicer-2, isoform A
7w0f[1] F siRNA A 66.7
/36.3		 9
/32		 A1ZAW0_DROME Dicer-2, isoform A
8hf0[2] F RNA (52-MER) A 0.0
/36.3		 7
/15		 A1ZAW0_DROME Dicer-2, isoform A
8hf0[2] G RNA (52-MER) A 53.8
/36.3		 13
/24		 A1ZAW0_DROME Dicer-2, isoform A
8hf1[3] E RNA (5'-R(P*GP*AP*GP*AP*CP*UP*UP*GP*G)-3') A 0.0
/36.3		 6
/13		 A1ZAW0_DROME Dicer-2, isoform A
8hf1[3] H RNA (5'-R(P*CP*CP*AP*AP*GP*UP*CP*UP*CP*UP*U)-3') A 70.0
/36.3		 10
/23		 A1ZAW0_DROME Dicer-2, isoform A
7eld[1] B pri-miRNA 166f A 28.6
/35.4		 35
/74		 DCL1_ARATH Endoribonuclease Dicer homolog 1
7ele[1] B pre-miRNA 166f A 31.2
/35.4		 32
/63		 DCL1_ARATH Endoribonuclease Dicer homolog 1
3eqt[2] C 5'-R(*GP*CP*GP*CP*GP*CP*GP*C)-3' A 40.0
/34.8		 15
/15		 DHX58_HUMAN ATP-dependent RNA helicase DHX58
3eqt[2] D 5'-R(*GP*CP*GP*CP*GP*CP*GP*C)-3' A 66.7
/34.8		 6
/6		 DHX58_HUMAN ATP-dependent RNA helicase DHX58
5zc9[1] B RNA (5'-R(*AP*GP*AP*GP*AP*GP*AP*GP*AP*G)-3') A 44.4
/34.2		 9
/26		 IF4A1_HUMAN Eukaryotic initiation factor 4A-I
6xki[1] B RNA (5'-R(*AP*GP*AP*GP*AP*GP*AP*GP*AP*G)-3') A 44.4
/34.2		 9
/26		 IF4A1_MOUSE Eukaryotic initiation factor 4A-I
4a2x[2] E 5'-R(*GP*GP*GP*AP*GP*AP*AP*CP*AP*AP*CP*GP*CP*GP)-3.. A 50.0
/34.0		 8
/9		 D3TI84_ANAPL RETINOIC ACID INDUCIBLE PROTEIN I
4a2x[2] F 5'-R(*CP*GP*CP*GP*UP*UP*GP*UP*UP*CP*UP*CP*CP*CP)-3.. B 50.0
/34.0		 8
/9		 D3TI84_ANAPL RETINOIC ACID INDUCIBLE PROTEIN I
4d25[2] B 5'-R(*UP*GP*AP*CP*AP*UP)-3' A 33.3
/33.3		 9
/24		 O01378_BOMMO BMVLG PROTEIN
2db3[3] A 5'-R(*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3' E 33.3
/32.7		 9
/21		 VASA_DROME ATP-dependent RNA helicase vasa
2db3[1] D 5'-R(*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3' H 33.3
/32.7		 9
/21		 VASA_DROME ATP-dependent RNA helicase vasa
6o8h[1] B DNA (5'-D(P*CP*CP*AP*TP*CP*GP*CP*GP*CP*TP*AP*CP*C).. A 22.2
/32.5		 9
/17		 UVRB_BACCA UvrABC system protein B
6o8h[1] C DNA (5'-D(P*AP*GP*CP*GP*CP*GP*AP*TP*GP*GP*AP*GP*A).. A 25.0
/32.5		 4
/8		 UVRB_BACCA UvrABC system protein B
2d7d[1] A 5'-D(P*TP*TP*T)-3' B 0.0
/32.2		 1
/13		 UVRB_BACSU UvrABC system protein B
2nmv[1] A 5'-D(P*TP*TP*TP*TP*T)-3' B 33.3
/32.2		 3
/19		 UVRB_BACSU UvrABC system protein B
3v4r[2] D DNA: 5 -TACTGTTT-3 A 20.0
/32.2		 5
/22		 UVRB_BACSU UvrABC system protein B
3lrn[2] C RNA (5'-R(*(GTP)P*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP*GP.. A 33.3
/31.6		 15
/15		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
3lrn[2] D RNA (5'-R(*(GTP)P*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP*GP.. A 0.0
/31.6		 3
/3		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
3lrr[2] C RNA (5'-R(*(ATP)P*UP*AP*UP*AP*UP*AP*UP*AP*UP*AP*U).. A 40.0
/31.6		 15
/15		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
3lrr[2] D RNA (5'-R(*(ATP)P*UP*AP*UP*AP*UP*AP*UP*AP*UP*AP*U).. A 25.0
/31.6		 4
/4		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
3ncu[2] C 5'-R(*(GDP)P*AP*CP*GP*CP*UP*AP*GP*CP*GP*UP*C)-3' A 46.2
/31.6		 13
/13		 DDX58_HUMAN RIG-I
3ncu[2] D 5'-R(*(GDP)P*AP*CP*GP*CP*UP*AP*GP*CP*GP*UP*C)-3' A 25.0
/31.6		 4
/4		 DDX58_HUMAN RIG-I
7bai[4] C RNA (5'-R(*(GDP)P*AP*CP*GP*CP*UP*AP*GP*CP*GP*UP*C).. A 54.5
/31.6		 11
/11		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
7bai[4] D RNA (5'-R(*(GDP)P*AP*CP*GP*CP*UP*AP*GP*CP*GP*UP*C).. A 33.3
/31.6		 3
/3		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
3og8[2] C RNA (5'-R(*GP*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP*.. A 45.5
/31.6		 11
/11		 DDX58_HUMAN ATP-dependent RNA helicase DDX58
3og8[2] D RNA (5'-R(*GP*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP*.. A 25.0
/31.6		 4
/4		 DDX58_HUMAN ATP-dependent RNA helicase DDX58
7bah[2] C RNA (5'-R(*GP*AP*CP*GP*CP*UP*AP*GP*CP*GP*UP*C)-3').. A 45.5
/31.6		 11
/11		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
7bah[2] D RNA (5'-R(*GP*AP*CP*GP*CP*UP*AP*GP*CP*GP*UP*C)-3').. A 33.3
/31.6		 3
/3		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
7mk1[2] C DNA (41-MER) A 23.5
/31.6		 17
/17		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
6o8e[4] C DNA (5'-D(*GP*CP*TP*CP*TP*AP*GP*AP*TP*TP*TP*TP*CP*.. A 20.0
/31.6		 10
/37		 UVRB_BACCA UvrABC system protein B
6o8e[4] D DNA (5'-D(*GP*CP*CP*GP*TP*AP*TP*GP*CP*CP*AP*AP*TP*.. A 25.0
/31.6		 4
/20		 UVRB_BACCA UvrABC system protein B
6o8g[3] D DNA (5'-D(*TP*CP*TP*CP*CP*AP*TP*CP*GP*CP*GP*CP*TP*.. A 20.0
/31.6		 10
/26		 UVRB_BACCA UvrABC system protein B
6o8g[2] E DNA (5'-D(*GP*GP*TP*AP*GP*CP*GP*CP*GP*AP*TP*GP*GP*.. A 20.0
/31.6		 5
/14		 UVRB_BACCA UvrABC system protein B
6o8g[1] G DNA (5'-D(*GP*GP*TP*AP*GP*CP*GP*CP*GP*AP*TP*GP*GP*.. B 33.3
/31.6		 6
/12		 UVRB_BACCA UvrABC system protein B
2p6r[1] A 25-MER C 30.8
/31.2		 13
/48		 afUHEL308 HELICASE
2hyi[4] A 5'-R(*UP*UP*UP*UP*UP*U)-3' E 40.0
/29.3		 10
/25		 DDX48_HUMAN Probable ATP-dependent RNA helicase DDX48
7znj[6] E RNA A 40.0
/29.3		 10
/23		 IF4A3_HUMAN Eukaryotic initiation factor 4A-III, N-terminally ..
2j0q[3] E 5'-R(*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U).. A 40.0
/29.3		 10
/23		 DDX48_HUMAN ATP-DEPENDENT RNA HELICASE DDX48
2xb2[1] D RNA POLY-U-RIBONUCLEOTIDE A 40.0
/29.3		 10
/27		 IF4A3_HUMAN EUKARYOTIC INITIATION FACTOR 4A-III
2xb2[1] G RNA POLY-U-RIBONUCLEOTIDE K 40.0
/29.3		 10
/23		 IF4A3_HUMAN EUKARYOTIC INITIATION FACTOR 4A-III
5xjc[1] G pre-mRNA UA 40.0
/29.3		 10
/27		 IF4A3_HUMAN Eukaryotic initiation factor 4A-III
5yzg[1] G Pre-mRNA FA 40.0
/29.3		 10
/27		 IF4A3_HUMAN Eukaryotic initiation factor 4A-III
8c6j[1] S PM5 5' Exon E 27.3
/29.3		 11
/29		 IF4A3_HUMAN Eukaryotic initiation factor 4A-III
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
COMPOUND
1025 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
2d7d[31] D ADP
ADENOSINE-5'-DIPHOSPHATE[27 atoms] 		B 100.0
/32.2		 1
/16		 UVRB_BACSU UvrABC system protein B
2zj5[7] G ADP
ADENOSINE-5'-DIPHOSPHATE[27 atoms] 		A 83.3
/37.1		 6
/10		 HELS_PYRFU Putative ski2-type helicase
3ex7[2] K ADP
ADENOSINE-5'-DIPHOSPHATE[27 atoms] 		C 100.0
/29.3		 1
/17		 IF4A3_HUMAN Eukaryotic initiation factor 4A-III
4d26[1] C ADP
ADENOSINE-5'-DIPHOSPHATE[27 atoms] 		A 100.0
/33.3		 1
/19		 O01378_BOMMO BMVLG PROTEIN
6gkh[4] D ADP
ADENOSINE-5'-DIPHOSPHATE[27 atoms] 		A 100.0
/87.2		 13
/13		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
7jl1[4] E ADP
ADENOSINE-5'-DIPHOSPHATE[27 atoms] 		A 87.5
/41.0		 8
/10		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
7to2[3] E ADP
ADENOSINE-5'-DIPHOSPHATE[27 atoms] 		A 80.0
/40.7		 10
/12		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
5f98[6] O M7G
7N-METHYL-8-HYDROGUANOSINE-5'-DIPHOSPHATE[29 atoms.. 		A 28.6
/40.7		 7
/7		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f9h[6] Q GTP
GUANOSINE-5'-TRIPHOSPHATE[32 atoms] 		A 22.2
/41.7		 9
/10		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
8dvr[1] D GTP
GUANOSINE-5'-TRIPHOSPHATE[32 atoms] 		A 40.0
/40.0		 10
/10		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
4bgd[1] E PE5
3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL[27 atom.. 		A 0.0
/37.9		 1
/7		 BRR2_YEAST PRE-MRNA-SPLICING HELICASE BRR2
2zja[2] B ACP
PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER[31 at.. 		A 72.7
/37.1		 11
/15		 HELS_PYRFU Putative ski2-type helicase
6xki[1] E V6D
(3S,6Z,8E,11S,15R)-15-amino-3-[(1E,3E,5E)-7-(dimet.. 		A 50.0
/34.2		 2
/9		 IF4A1_MOUSE Eukaryotic initiation factor 4A-I
1d9z[1] E ATP
ADENOSINE-5'-TRIPHOSPHATE[31 atoms] 		A 100.0
/31.6		 1
/13		 UVRB_BACCA EXCINUCLEASE UVRABC COMPONENT UVRB
6gkm[2] E ATP
ADENOSINE-5'-TRIPHOSPHATE[31 atoms] 		A 100.0
/87.2		 10
/10		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
6qdv[1] JB ATP
ADENOSINE-5'-TRIPHOSPHATE[31 atoms] 		D 75.0
/29.3		 4
/20		 IF4A3_HUMAN Eukaryotic initiation factor 4A-III
8c6j[1] TB ATP
ADENOSINE-5'-TRIPHOSPHATE[31 atoms] 		E 42.9
/29.3		 7
/18		 IF4A3_HUMAN Eukaryotic initiation factor 4A-III
2db3[4] J ANP
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER[31 ato.. 		E 100.0
/32.7		 3
/23		 VASA_DROME ATP-dependent RNA helicase vasa
2hyi[7] L ANP
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER[31 ato.. 		E 75.0
/29.3		 4
/20		 DDX48_HUMAN Probable ATP-dependent RNA helicase DDX48
3tbk[4] B ANP
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER[31 ato.. 		A 66.7
/42.5		 12
/12		 DDX58_MOUSE RIG-I Helicase Domain
4d25[1] C ANP
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER[31 ato.. 		A 100.0
/33.3		 2
/22		 O01378_BOMMO BMVLG PROTEIN
5zc9[1] C ANP
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER[31 ato.. 		A 66.7
/34.2		 3
/20		 IF4A1_HUMAN Eukaryotic initiation factor 4A-I
6gjz[1] E ANP
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER[31 ato.. 		A 100.0
/87.4		 10
/10		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
6xki[7] C ANP
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER[31 ato.. 		A 66.7
/34.2		 3
/23		 IF4A1_MOUSE Eukaryotic initiation factor 4A-I
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
METAL
1025 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
3b6e[1] B NA
SODIUM ION[1 atoms] 		A 100.0
/100.0		 5
/5		 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..
1fuk[1] B ZN
ZINC ION[1 atoms] 		A 0.0
/30.6		 3
/3		 IF4A_YEAST EUKARYOTIC INITIATION FACTOR 4A
2qfb[10] K ZN
ZINC ION[1 atoms] 		A 100.0
/31.6		 4
/4		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
2rqa[12] B ZN
ZINC ION[1 atoms] 		A 100.0
/34.8		 5
/6		 DHX58_HUMAN ATP-dependent RNA helicase DHX58
2rqb[3] B ZN
ZINC ION[1 atoms] 		A 100.0
/100.0		 5
/5		 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..
2ykg[3] D ZN
ZINC ION[1 atoms] 		A 100.0
/40.5		 4
/4		 DDX58_HUMAN PROBABLE ATP-DEPENDENT RNA HELICASE DDX58
3lrn[4] E ZN
ZINC ION[1 atoms] 		A 100.0
/31.6		 4
/4		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
3ncu[2] E ZN
ZINC ION[1 atoms] 		A 100.0
/31.6		 4
/4		 DDX58_HUMAN RIG-I
3og8[9] E ZN
ZINC ION[1 atoms] 		A 100.0
/31.6		 4
/4		 DDX58_HUMAN ATP-dependent RNA helicase DDX58
4ay2[7] C ZN
ZINC ION[1 atoms] 		A 100.0
/40.6		 4
/4		 DDX58_HUMAN PROBABLE ATP-DEPENDENT RNA HELICASE DDX58
4bpb[23] D ZN
ZINC ION[1 atoms] 		A 100.0
/40.4		 4
/4		 DDX58_HUMAN PROBABLE ATP-DEPENDENT RNA HELICASE DDX58
4gl2[10] H ZN
ZINC ION[1 atoms] 		A 100.0
/99.7		 5
/5		 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..
5jaj[1] D ZN
ZINC ION[1 atoms] 		A 100.0
/47.8		 4
/4		 G0YYQ5_CHICK LGP2
5jb2[3] D ZN
ZINC ION[1 atoms] 		A 100.0
/47.0		 4
/4		 G0YYQ5_CHICK LGP2
6gjz[5] D ZN
ZINC ION[1 atoms] 		A 100.0
/87.4		 4
/4		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
6gpg[1] D ZN
ZINC ION[1 atoms] 		C 100.0
/40.7		 5
/5		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
7bkp[4] D ZN
ZINC ION[1 atoms] 		A 100.0
/87.2		 5
/5		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
7bkq[2] D ZN
ZINC ION[1 atoms] 		A 100.0
/87.2		 5
/5		 IFIH1_MOUSE Isoform 2 of Interferon-induced helicase C domain-..
7jl0[4] E ZN
ZINC ION[1 atoms] 		C 100.0
/99.7		 4
/4		 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..
7jl1[4] H ZN
ZINC ION[1 atoms] 		A 100.0
/41.0		 4
/4		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
7tnx[9] D ZN
ZINC ION[1 atoms] 		A 100.0
/40.4		 4
/4		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
2j0q[2] K MG
MAGNESIUM ION[1 atoms] 		A 100.0
/29.3		 1
/4		 DDX48_HUMAN ATP-DEPENDENT RNA HELICASE DDX48
3zd7[1] E MG
MAGNESIUM ION[1 atoms] 		A 100.0
/42.3		 2
/2		 DDX58_HUMAN PROBABLE ATP-DEPENDENT RNA HELICASE DDX58
4a36[20] H MG
MAGNESIUM ION[1 atoms] 		A 100.0
/41.5		 4
/5		 D3TI84_ANAPL RETINOIC ACID INDUCIBLE PROTEIN I
4ay2[1] E MG
MAGNESIUM ION[1 atoms] 		A 100.0
/40.6		 3
/3		 DDX58_HUMAN PROBABLE ATP-DEPENDENT RNA HELICASE DDX58
5e3h[5] E MG
MAGNESIUM ION[1 atoms] 		A 0.0
/41.8		 2
/2		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5e3h[1] F MG
MAGNESIUM ION[1 atoms] 		A 100.0
/41.8		 1
/1		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f98[6] N MG
MAGNESIUM ION[1 atoms] 		A 50.0
/40.7		 2
/2		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f9f[4] N MG
MAGNESIUM ION[1 atoms] 		A 0.0
/41.1		 1
/1		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f9h[2] N MG
MAGNESIUM ION[1 atoms] 		A 0.0
/41.7		 4
/4		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f9h[1] O MG
MAGNESIUM ION[1 atoms] 		A 50.0
/41.7		 2
/2		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f9h[1] P MG
MAGNESIUM ION[1 atoms] 		A 100.0
/41.7		 1
/1		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f9h[1] U MG
MAGNESIUM ION[1 atoms] 		E 0.0
/42.1		 1
/1		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f9h[1] X MG
MAGNESIUM ION[1 atoms] 		G 50.0
/41.5		 2
/2		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5jb2[1] H MG
MAGNESIUM ION[1 atoms] 		A 0.0
/47.0		 1
/1		 G0YYQ5_CHICK LGP2
6gkh[1] F MG
MAGNESIUM ION[1 atoms] 		A 100.0
/87.2		 1
/1		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
6gpg[4] E MG
MAGNESIUM ION[1 atoms] 		C 50.0
/40.7		 2
/2		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
6o8e[1] R MG
MAGNESIUM ION[1 atoms] 		B 100.0
/31.6		 1
/1		 UVRB_BACCA UvrABC system protein B
7bkp[1] F MG
MAGNESIUM ION[1 atoms] 		A 100.0
/87.2		 1
/1		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
7jl0[1] H MG
MAGNESIUM ION[1 atoms] 		C 100.0
/99.7		 1
/1		 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..
7mk1[2] F MG
MAGNESIUM ION[1 atoms] 		A 0.0
/31.6		 1
/1		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
7to2[3] D MG
MAGNESIUM ION[1 atoms] 		A 100.0
/40.7		 2
/2		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
2qfd[10] K HG
MERCURY (II) ION[1 atoms] 		A 100.0
/31.6		 4
/4		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
2w4r[4] E HG
MERCURY (II) ION[1 atoms] 		A 100.0
/35.1		 4
/4		 DHX58_HUMAN PROBABLE ATP-DEPENDENT RNA HELICASE DHX58
3eaq[1] C CL
CHLORIDE ION[1 atoms] 		A 0.0
/36.8		 2
/3		 Q72GF3_THET2 Heat resistant RNA dependent ATPase
3eaq[1] D CL
CHLORIDE ION[1 atoms] 		B 0.0
/36.8		 1
/3		 Q72GF3_THET2 Heat resistant RNA dependent ATPase
4on9[1] G CL
CHLORIDE ION[1 atoms] 		B 0.0
/44.0		 2
/2		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
6o8e[2] K CL
CHLORIDE ION[1 atoms] 		A 0.0
/31.6		 1
/1		 UVRB_BACCA UvrABC system protein B
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
HOMO
1025 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
7dni[8] F IFIH1_HUMAN Interferon-induced helicase C domain-containing pr.. E 100.0
/100.0		 17
/17		 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..
7dni[8] H IFIH1_HUMAN Interferon-induced helicase C domain-containing pr.. E 100.0
/100.0		 15
/15		 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..
7jl2[2] E IFIH1_HUMAN Interferon-induced helicase C domain-containing pr.. C 88.9
/99.7		 9
/9		 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..
7jl2[2] G IFIH1_HUMAN Interferon-induced helicase C domain-containing pr.. C 100.0
/99.7		 9
/9		 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..
7bkq[1] A IFIH1_MOUSE Isoform 2 of Interferon-induced helicase C domain-.. A 63.6
/87.2		 11
/11		 IFIH1_MOUSE Isoform 2 of Interferon-induced helicase C domain-..
7bkq[1] A IFIH1_MOUSE Isoform 2 of Interferon-induced helicase C domain-.. A 84.6
/87.2		 13
/13		 IFIH1_MOUSE Isoform 2 of Interferon-induced helicase C domain-..
5jc7[2] B D9N195_CHICK Melanoma differentiation associated protein-5[647 .. A 57.1
/73.6		 21
/21		 D9N195_CHICK Melanoma differentiation associated protein-5
4on9[2] B DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58[495 aa] A 46.9
/44.1		 32
/40		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f98[18] C DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58[648 aa] A 31.6
/40.7		 19
/20		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f98[6] E DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58[641 aa] A 19.2
/40.7		 26
/26		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f98[6] G DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58[647 aa] A 0.0
/40.7		 1
/1		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f98[6] K DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58[644 aa] A 0.0
/40.7		 3
/3		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f98[6] G DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58[647 aa] C 30.0
/40.9		 10
/11		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f98[5] K DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58[644 aa] C 0.0
/40.9		 1
/3		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
7jl3[2] C DDX58_HUMAN Antiviral innate immune response receptor RIG-I[65.. A 0.0
/41.4		 7
/7		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
7jl3[2] E DDX58_HUMAN Antiviral innate immune response receptor RIG-I[65.. A 0.0
/41.4		 5
/6		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
7w0a[2] H A1ZAW0_DROME Dicer-2, isoform A[1478 aa] A 53.8
/36.3		 13
/55		 A1ZAW0_DROME Dicer-2, isoform A
8hf1[2] D A1ZAW0_DROME Dicer-2, isoform A[1561 aa] A 0.0
/36.3		 7
/28		 A1ZAW0_DROME Dicer-2, isoform A
3eqt[2] B DHX58_HUMAN ATP-dependent RNA helicase DHX58[142 aa] A 50.0
/34.8		 2
/2		 DHX58_HUMAN ATP-dependent RNA helicase DHX58
3v4r[2] B UVRB_BACSU UvrABC system protein B[579 aa] A 0.0
/32.2		 4
/26		 UVRB_BACSU UvrABC system protein B
2vsx[2] B IF4A_YEAST ATP-DEPENDENT RNA HELICASE EIF4A[366 aa] A 16.7
/30.9		 12
/22		 IF4A_YEAST ATP-DEPENDENT RNA HELICASE EIF4A
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
PRECIPITANT
1025 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
5jaj[1] F ALF
TETRAFLUOROALUMINATE ION[5 atoms] 		A 100.0
/47.8		 8
/8		 G0YYQ5_CHICK LGP2
5jb2[2] F ALF
TETRAFLUOROALUMINATE ION[5 atoms] 		A 100.0
/47.0		 8
/8		 G0YYQ5_CHICK LGP2
6gkh[3] E ALF
TETRAFLUOROALUMINATE ION[5 atoms] 		A 100.0
/87.2		 6
/6		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
7jl0[4] G ALF
TETRAFLUOROALUMINATE ION[5 atoms] 		C 100.0
/99.7		 6
/6		 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..
7jl1[4] F ALF
TETRAFLUOROALUMINATE ION[5 atoms] 		A 100.0
/41.0		 5
/5		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
3tbk[1] C EDO
1,2-ETHANEDIOL[4 atoms] 		A 33.3
/42.5		 6
/7		 DDX58_MOUSE RIG-I Helicase Domain
5jaj[1] H EDO
1,2-ETHANEDIOL[4 atoms] 		A 80.0
/47.8		 5
/5		 G0YYQ5_CHICK LGP2
5jaj[1] I EDO
1,2-ETHANEDIOL[4 atoms] 		A 40.0
/47.8		 5
/5		 G0YYQ5_CHICK LGP2
5jaj[1] J EDO
1,2-ETHANEDIOL[4 atoms] 		A 66.7
/47.8		 6
/6		 G0YYQ5_CHICK LGP2
5jaj[1] K MGF
TRIFLUOROMAGNESATE[4 atoms] 		A 100.0
/47.8		 1
/1		 G0YYQ5_CHICK LGP2
4a2v[1] C GOL
GLYCEROL[6 atoms] 		A 80.0
/34.0		 5
/8		 D3TI84_ANAPL RETINOIC ACID INDUCIBLE PROTEIN I
4a2v[1] D GOL
GLYCEROL[6 atoms] 		A 33.3
/34.0		 3
/3		 D3TI84_ANAPL RETINOIC ACID INDUCIBLE PROTEIN I
4c9b[1] E GOL
GLYCEROL[6 atoms] 		A 0.0
/29.8		 1
/1		 IF4A3_HUMAN EUKARYOTIC INITIATION FACTOR 4A-III
4c9b[1] F GOL
GLYCEROL[6 atoms] 		A 50.0
/29.8		 4
/4		 IF4A3_HUMAN EUKARYOTIC INITIATION FACTOR 4A-III
4c9b[1] G GOL
GLYCEROL[6 atoms] 		A 60.0
/29.8		 5
/7		 IF4A3_HUMAN EUKARYOTIC INITIATION FACTOR 4A-III
4c9b[1] I GOL
GLYCEROL[6 atoms] 		A 25.0
/29.8		 4
/4		 IF4A3_HUMAN EUKARYOTIC INITIATION FACTOR 4A-III
4c9b[1] K GOL
GLYCEROL[6 atoms] 		A 20.0
/29.8		 5
/5		 IF4A3_HUMAN EUKARYOTIC INITIATION FACTOR 4A-III
4d25[1] E GOL
GLYCEROL[6 atoms] 		A 0.0
/33.3		 2
/3		 O01378_BOMMO BMVLG PROTEIN
5e3h[1] H GOL
GLYCEROL[6 atoms] 		A 100.0
/41.8		 5
/5		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5e3h[1] J BEF
BERYLLIUM TRIFLUORIDE ION[4 atoms] 		A 100.0
/41.8		 5
/5		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
3ex7[2] L AF3
ALUMINUM FLUORIDE[4 atoms] 		C 100.0
/29.3		 2
/8		 IF4A3_HUMAN Eukaryotic initiation factor 4A-III
4a36[2] I AF3
ALUMINUM FLUORIDE[4 atoms] 		A 100.0
/41.5		 9
/9		 D3TI84_ANAPL RETINOIC ACID INDUCIBLE PROTEIN I
5f9f[1] O ETF
TRIFLUOROETHANOL[6 atoms] 		A 77.8
/41.1		 9
/9		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f9f[1] Y ETF
TRIFLUOROETHANOL[6 atoms] 		E 20.0
/40.2		 5
/5		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f9f[2] CA ETF
TRIFLUOROETHANOL[6 atoms] 		G 20.0
/40.3		 5
/5		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f9f[1] NA ETF
TRIFLUOROETHANOL[6 atoms] 		K 66.7
/40.3		 6
/6		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f9f[1] P BU3
(R,R)-2,3-BUTANEDIOL[6 atoms] 		A 57.1
/41.1		 7
/7		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f9f[1] Q BU3
(R,R)-2,3-BUTANEDIOL[6 atoms] 		A 80.0
/41.1		 5
/5		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f9f[2] U BU3
(R,R)-2,3-BUTANEDIOL[6 atoms] 		A 20.0
/41.1		 5
/5		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f9f[1] T BU3
(R,R)-2,3-BUTANEDIOL[6 atoms] 		C 25.0
/40.4		 4
/4		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f9f[1] V BU3
(R,R)-2,3-BUTANEDIOL[6 atoms] 		C 25.0
/40.4		 4
/4		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f9f[5] W BU3
(R,R)-2,3-BUTANEDIOL[6 atoms] 		C 62.5
/40.4		 8
/8		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f9f[2] AA BU3
(R,R)-2,3-BUTANEDIOL[6 atoms] 		E 44.4
/40.2		 9
/9		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f9f[1] EA BU3
(R,R)-2,3-BUTANEDIOL[6 atoms] 		G 60.0
/40.3		 5
/5		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
1hv8[1] D SO4
SULFATE ION[5 atoms] 		A 33.3
/36.4		 3
/3		 H669_METJA PUTATIVE ATP-DEPENDENT RNA HELICASE MJ0669
2w4r[4] F SO4
SULFATE ION[5 atoms] 		A 0.0
/35.1		 3
/3		 DHX58_HUMAN PROBABLE ATP-DEPENDENT RNA HELICASE DHX58
2w4r[1] K SO4
SULFATE ION[5 atoms] 		C 0.0
/35.8		 3
/4		 DHX58_HUMAN PROBABLE ATP-DEPENDENT RNA HELICASE DHX58
2ykg[4] E SO4
SULFATE ION[5 atoms] 		A 85.7
/40.5		 7
/7		 DDX58_HUMAN PROBABLE ATP-DEPENDENT RNA HELICASE DDX58
2zj2[4] E SO4
SULFATE ION[5 atoms] 		A 50.0
/37.1		 2
/3		 HELS_PYRFU Putative ski2-type helicase
3ts9[1] B SO4
SULFATE ION[5 atoms] 		A 100.0
/84.4		 1
/1		 IFIH1_MOUSE IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
3ts9[4] D SO4
SULFATE ION[5 atoms] 		A 100.0
/84.4		 4
/4		 IFIH1_MOUSE IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
4kbg[1] E SO4
SULFATE ION[5 atoms] 		B 0.0
/36.8		 1
/8		 Q72GF3_THET2 Heat resistant RNA dependent ATPase
4kbg[1] H SO4
SULFATE ION[5 atoms] 		B 0.0
/36.8		 1
/5		 Q72GF3_THET2 Heat resistant RNA dependent ATPase
4on9[2] D SO4
SULFATE ION[5 atoms] 		A 75.0
/44.1		 4
/4		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5jbg[1] G SO4
SULFATE ION[5 atoms] 		A 33.3
/47.5		 3
/3		 G0YYQ5_CHICK LGP2
5jbg[1] H SO4
SULFATE ION[5 atoms] 		A 0.0
/47.5		 3
/3		 G0YYQ5_CHICK LGP2
5jbg[1] I SO4
SULFATE ION[5 atoms] 		A 100.0
/47.5		 1
/1		 G0YYQ5_CHICK LGP2
5jbg[1] J SO4
SULFATE ION[5 atoms] 		A 50.0
/47.5		 4
/4		 G0YYQ5_CHICK LGP2
1wp9[6] G PO4
PHOSPHATE ION[5 atoms] 		A 85.7
/34.9		 7
/7		 Q8TZH8_PYRFU ATP-dependent RNA helicase, putative
2p6u[1] B PO4
PHOSPHATE ION[5 atoms] 		A 40.0
/30.9		 5
/5		 afuHEL308 HELICASE
2p6u[1] E PO4
PHOSPHATE ION[5 atoms] 		A 0.0
/30.9		 1
/6		 afuHEL308 HELICASE
2p6u[1] F PO4
PHOSPHATE ION[5 atoms] 		A 33.3
/30.9		 3
/3		 afuHEL308 HELICASE
2p6u[1] G PO4
PHOSPHATE ION[5 atoms] 		A 60.0
/30.9		 5
/5		 afuHEL308 HELICASE
4d26[1] D PO4
PHOSPHATE ION[5 atoms] 		A 100.0
/33.3		 1
/9		 O01378_BOMMO BMVLG PROTEIN
6o8e[2] H PO4
PHOSPHATE ION[5 atoms] 		A 100.0
/31.6		 3
/7		 UVRB_BACCA UvrABC system protein B
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.