HOMCOS(prot_sch_conbars.cgi):

		Contact Molecules for Homologous Proteins
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PID	QueryLength	Homolgous Sequence in PDB	UniProt Query	TITLE
1697893	100	50	Q9BV40(VAMP8_HUMAN)	RecName: Full=Vesicle-associated membrane protein 8 ; Short=VAMP-8 ;AltName: Full=Endobrevin ; Short=EDB ;
QUERYSEQ	MEEASEGGGNDRVRNLQSEVEGVKNIMTQNVERILARGENLEHLRNKTEDLEATSEHFKTTSQKVARKFWWKNVKMIVLICVIVFIIILFIVLFATGAFS

[BLAST file for PDB] (plain) (bar) (multiple alignment) [BLAST for UniProt: (plain) (bar) (multiple alignment) (PSSM file) ]

UniProt Feature Tables [Q9BV40(VAMP8_HUMAN)]

100
	region	name	description
	1-100	CHAIN	/note="Vesicle-associated membrane protein 8" /id="PRO_0000206736"
	1-75	TOPO_DOM	/note="Cytoplasmic"
	76-96	TRANSMEM	/note="Helical; Anchor for type IV membrane protein"
	97-100	TOPO_DOM	/note="Vesicular"
	12-72	DOMAIN	/note="v-SNARE coiled-coil homology"
	64-64	LIPID	/note="(Microbial infection) N6-stearoyl lysine"
	68-68	LIPID	/note="(Microbial infection) N6-stearoyl lysine"
	1-83	DISORDER	predicted by DISOPRED

MONOMER

100

pdb_id a¹ identity[%]² description

7bv6 A 100.0 VAMP8_HUMAN Vesicle-associated membrane protein 8

1.a¹:asym_id for the homologue. 2.identity[%]²:sequence identity between the query and the homologue.

HETERO

100 pdb_id contact mol homologue

a³ description a⁴ identity[%]⁵ Ncon⁶ description

4wy4[7] B STX17_HUMAN Syntaxin-17[58 aa] A 100.0
/100.0 31
/31 VAMP8_HUMAN Vesicle-associated membrane protein 8

4wy4[1] C SNP29_HUMAN Synaptosomal-associated protein 29[78 aa] A 100.0
/100.0 3
/3 VAMP8_HUMAN Vesicle-associated membrane protein 8

7bv6[6] C SNP29_HUMAN Synaptosomal-associated protein 29[72 aa] A 100.0
/100.0 3
/3 VAMP8_HUMAN Vesicle-associated membrane protein 8

4wy4[7] D SNP29_HUMAN Synaptosomal-associated protein 29[65 aa] A 100.0
/100.0 22
/22 VAMP8_HUMAN Vesicle-associated membrane protein 8

1gl2[1] B O70439 SYNTAXIN 7[60 aa] A 96.6
/98.1 29
/29 Q9WUF4 ENDOBREVIN

1gl2[1] C VTL1_MOUSE VESICLE TRANSPORT V-SNARE PROTEIN VTI1-LIKE 1[60 a.. A 100.0
/98.1 3
/3 Q9WUF4 ENDOBREVIN

1gl2[1] D STX8_RAT SYNTAXIN 8[55 aa] A 100.0
/98.1 23
/23 Q9WUF4 ENDOBREVIN

1kil[1] E CPLX1_RAT Complexin I SNARE-complex binding region[41 aa] A 16.7
/36.9 12
/12 VAMP2_RAT Synaptobrevin SNARE motif

2n1t[1] E SYT1_HUMAN Synaptotagmin-1[156 aa] A 0.0
/36.4 1
/1 VAMP2_RAT Vesicle-associated membrane protein 2

3hd7[4] B STX1A_RAT Syntaxin-1A[98 aa] A 36.8
/35.5 38
/41 VAMP2_RAT Vesicle-associated membrane protein 2

1kil[29] B STX1A_RAT Syntaxin SNARE motif short[59 aa] A 41.4
/36.9 29
/29 VAMP2_RAT Synaptobrevin SNARE motif

6mti[4] H STX1A_RAT Syntaxin-1A[67 aa] AA 50.0
/33.9 2
/2 VAMP2_RAT Vesicle-associated membrane protein 2

1kil[18] C SN25_HUMAN SNAP-25 N-terminal SNARE motif[72 aa] A 75.0
/36.9 4
/4 VAMP2_RAT Synaptobrevin SNARE motif

1sfc[3] C SNP25_RAT PROTEIN (SNAP-25B)[77 aa] A 75.0
/36.4 4
/4 VAMP2_RAT PROTEIN (SYNAPTOBREVIN 2)

2n1t[1] C SNP25_HUMAN Synaptosomal-associated protein 25[77 aa] A 60.0
/36.4 5
/5 VAMP2_RAT Vesicle-associated membrane protein 2

3hd7[4] C SNP25_RAT Synaptosomal-associated protein 25[75 aa] A 75.0
/35.5 4
/4 VAMP2_RAT Vesicle-associated membrane protein 2

1kil[27] D SN25_HUMAN SNAP-25 C-terminal SNARE motif[66 aa] A 44.0
/36.9 25
/25 VAMP2_RAT Synaptobrevin SNARE motif

3j96[4] G SNAA_RAT Alpha-soluble NSF attachment protein[286 aa] K 0.0
/34.4 2
/2 VAMP2_RAT Vesicle-associated membrane protein 2

3j96[4] H SNAA_RAT Alpha-soluble NSF attachment protein[286 aa] K 12.5
/34.4 8
/8 VAMP2_RAT Vesicle-associated membrane protein 2

3j96[4] I SNAA_RAT Alpha-soluble NSF attachment protein[286 aa] K 12.5
/34.4 8
/8 VAMP2_RAT Vesicle-associated membrane protein 2

3j99[1] J SNAA_RAT Alpha-soluble NSF attachment protein[286 aa] K 100.0
/34.4 1
/1 VAMP2_RAT Vesicle-associated membrane protein 2

6ip1[1] E A5D7S0_BOVIN Alpha-soluble NSF attachment protein[292 aa] A 20.0
/33.9 5
/5 VAMP2_RAT Vesicle-associated membrane protein 2

6ip1[1] G A5D7S0_BOVIN Alpha-soluble NSF attachment protein[292 aa] A 50.0
/33.9 4
/4 VAMP2_RAT Vesicle-associated membrane protein 2

6ip1[1] H A5D7S0_BOVIN Alpha-soluble NSF attachment protein[292 aa] A 12.5
/33.9 8
/8 VAMP2_RAT Vesicle-associated membrane protein 2

6mdm[2] J SNAA_RAT Alpha-soluble NSF attachment protein[286 aa] I 50.0
/34.4 2
/2 VAMP2_RAT Vesicle-associated membrane protein 2

6mdm[2] K SNAA_RAT Alpha-soluble NSF attachment protein[286 aa] I 28.6
/34.4 7
/7 VAMP2_RAT Vesicle-associated membrane protein 2

3j96[4] M Synaptosomal-associated protein 25[131 aa] K 47.8
/34.4 23
/23 VAMP2_RAT Vesicle-associated membrane protein 2

6mdm[2] G SNP25_RAT Synaptosomal-associated protein 25[147 aa] I 42.1
/34.4 19
/19 VAMP2_RAT Vesicle-associated membrane protein 2

1l4a[1] B O46345_LOLPE S-SYNTAXIN[82 aa] A 46.2
/33.9 26
/26 SYB_LOLPE SYNAPTOBREVIN

1l4a[1] C Q8T3S4_LOLPE S-SNAP25 fusion protein[73 aa] A 100.0
/33.9 3
/3 SYB_LOLPE SYNAPTOBREVIN

1l4a[1] D Q8T3S4_LOLPE S-SNAP25 fusion protein[75 aa] A 39.1
/33.9 23
/25 SYB_LOLPE SYNAPTOBREVIN

1l4a[1] E Q95PA1_LOLPE SYNAPHIN A[28 aa] A 16.7
/33.9 6
/6 SYB_LOLPE SYNAPTOBREVIN

5ccg[3] F SYT1_RAT Synaptotagmin-1[275 aa] A 40.0
/34.9 5
/5 VAMP2_RAT Vesicle-associated membrane protein 2

6ip1[1] C SNP25_RAT Synaptosomal-associated protein 25[65 aa] A 66.7
/33.9 3
/3 VAMP2_RAT Vesicle-associated membrane protein 2

2nps[1] B O70319_RAT Syntaxin 13[68 aa] A 43.3
/32.3 30
/31 VAMP4_MOUSE Vesicle-associated membrane protein 4

2nps[1] C VTI1A_RAT Vesicle transport through interaction with t-SNARE.. A 60.0
/32.3 5
/5 VAMP4_MOUSE Vesicle-associated membrane protein 4

2nps[1] D STX6_HUMAN Syntaxin-6[63 aa] A 40.0
/32.3 25
/26 VAMP4_MOUSE Vesicle-associated membrane protein 4

3b5n[3] B SSO1_YEAST Protein SSO1[69 aa] A 37.9
/28.8 29
/29 SNC1_YEAST Synaptobrevin homolog 1

3b5n[3] C SEC9_YEAST Protein transport protein SEC9[70 aa] A 75.0
/28.8 4
/4 SNC1_YEAST Synaptobrevin homolog 1

3b5n[3] D SEC9_YEAST Protein transport protein SEC9[64 aa] A 46.2
/28.8 26
/26 SNC1_YEAST Synaptobrevin homolog 1

3.a³:asym_id for the contact molecule. 4.a⁴:asym_id for the template homologue. 5.identity[%]⁵:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon⁶:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.

COMPOUND

100 pdb_id contact mol homologue

a³ description a⁴ identity[%]⁵ Ncon⁶ description

3hd7[1] I GGG
glycylglycylglycine[13 atoms] A 50.0
/35.5 2
/2 VAMP2_RAT Vesicle-associated membrane protein 2

3hd7[1] J GGG
glycylglycylglycine[13 atoms] A 100.0
/35.5 2
/2 VAMP2_RAT Vesicle-associated membrane protein 2

3hd7[1] M GGG
glycylglycylglycine[13 atoms] E 50.0
/35.5 2
/2 VAMP2_RAT Vesicle-associated membrane protein 2

3.a³:asym_id for the contact molecule. 4.a⁴:asym_id for the template homologue. 5.identity[%]⁵:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon⁶:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.

METAL

100 pdb_id contact mol homologue

a³ description a⁴ identity[%]⁵ Ncon⁶ description

1kil[1] F MG
MAGNESIUM ION[1 atoms] A 0.0
/36.9 1
/1 VAMP2_RAT Synaptobrevin SNARE motif

1sfc[1] M SR
STRONTIUM ION[1 atoms] A 0.0
/36.4 1
/1 VAMP2_RAT PROTEIN (SYNAPTOBREVIN 2)

1sfc[1] N SR
STRONTIUM ION[1 atoms] A 33.3
/36.4 3
/3 VAMP2_RAT PROTEIN (SYNAPTOBREVIN 2)

1n7s[1] E CA
CALCIUM ION[1 atoms] A 0.0
/34.9 1
/1 VAMP2_RAT vesicle-associated membrane protein 2

5ccg[2] L CA
CALCIUM ION[1 atoms] A 0.0
/34.9 1
/1 VAMP2_RAT Vesicle-associated membrane protein 2

5ccg[3] M CA
CALCIUM ION[1 atoms] A 0.0
/34.9 1
/1 VAMP2_RAT Vesicle-associated membrane protein 2

6wvw[1] M CA
CALCIUM ION[1 atoms] E 0.0
/34.9 1
/1 VAMP2_RAT Vesicle-associated membrane protein 2

3.a³:asym_id for the contact molecule. 4.a⁴:asym_id for the template homologue. 5.identity[%]⁵:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon⁶:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.

PRECIPITANT

100 pdb_id contact mol homologue

a³ description a⁴ identity[%]⁵ Ncon⁶ description

3hd7[1] N SO4
SULFATE ION[5 atoms] E 50.0
/35.5 2
/2 VAMP2_RAT Vesicle-associated membrane protein 2

3hd7[1] O SO4
SULFATE ION[5 atoms] E 33.3
/35.5 3
/3 VAMP2_RAT Vesicle-associated membrane protein 2

1n7s[1] F MPD
(4S)-2-METHYL-2,4-PENTANEDIOL[8 atoms] A 100.0
/34.9 1
/1 VAMP2_RAT vesicle-associated membrane protein 2

1n7s[1] I MPD
(4S)-2-METHYL-2,4-PENTANEDIOL[8 atoms] A 0.0
/34.9 1
/1 VAMP2_RAT vesicle-associated membrane protein 2

1sfc[1] O MPD
(4S)-2-METHYL-2,4-PENTANEDIOL[8 atoms] A 100.0
/36.4 3
/3 VAMP2_RAT PROTEIN (SYNAPTOBREVIN 2)

1sfc[3] P MPD
(4S)-2-METHYL-2,4-PENTANEDIOL[8 atoms] A 0.0
/36.4 2
/2 VAMP2_RAT PROTEIN (SYNAPTOBREVIN 2)

6wvw[1] L MPD
(4S)-2-METHYL-2,4-PENTANEDIOL[8 atoms] E 100.0
/34.9 1
/1 VAMP2_RAT Vesicle-associated membrane protein 2

3.a³:asym_id for the contact molecule. 4.a⁴:asym_id for the template homologue. 5.identity[%]⁵:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon⁶:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.

MONOMER
100
	pdb_id	a¹	identity[%]²	description
	7bv6	A	100.0	VAMP8_HUMAN Vesicle-associated membrane protein 8
	1.a¹:asym_id for the homologue. 2.identity[%]²:sequence identity between the query and the homologue.

HETERO
100	pdb_id	contact mol		homologue
	pdb_id	a³	description	a⁴	identity[%]⁵	Ncon⁶	description
	4wy4[7]	B	STX17_HUMAN Syntaxin-17[58 aa]	A	100.0 /100.0	31 /31	VAMP8_HUMAN Vesicle-associated membrane protein 8
	4wy4[1]	C	SNP29_HUMAN Synaptosomal-associated protein 29[78 aa]	A	100.0 /100.0	3 /3	VAMP8_HUMAN Vesicle-associated membrane protein 8
	7bv6[6]	C	SNP29_HUMAN Synaptosomal-associated protein 29[72 aa]	A	100.0 /100.0	3 /3	VAMP8_HUMAN Vesicle-associated membrane protein 8
	4wy4[7]	D	SNP29_HUMAN Synaptosomal-associated protein 29[65 aa]	A	100.0 /100.0	22 /22	VAMP8_HUMAN Vesicle-associated membrane protein 8
	1gl2[1]	B	O70439 SYNTAXIN 7[60 aa]	A	96.6 /98.1	29 /29	Q9WUF4 ENDOBREVIN
	1gl2[1]	C	VTL1_MOUSE VESICLE TRANSPORT V-SNARE PROTEIN VTI1-LIKE 1[60 a..	A	100.0 /98.1	3 /3	Q9WUF4 ENDOBREVIN
	1gl2[1]	D	STX8_RAT SYNTAXIN 8[55 aa]	A	100.0 /98.1	23 /23	Q9WUF4 ENDOBREVIN
	1kil[1]	E	CPLX1_RAT Complexin I SNARE-complex binding region[41 aa]	A	16.7 /36.9	12 /12	VAMP2_RAT Synaptobrevin SNARE motif
	2n1t[1]	E	SYT1_HUMAN Synaptotagmin-1[156 aa]	A	0.0 /36.4	1 /1	VAMP2_RAT Vesicle-associated membrane protein 2
	3hd7[4]	B	STX1A_RAT Syntaxin-1A[98 aa]	A	36.8 /35.5	38 /41	VAMP2_RAT Vesicle-associated membrane protein 2
	1kil[29]	B	STX1A_RAT Syntaxin SNARE motif short[59 aa]	A	41.4 /36.9	29 /29	VAMP2_RAT Synaptobrevin SNARE motif
	6mti[4]	H	STX1A_RAT Syntaxin-1A[67 aa]	AA	50.0 /33.9	2 /2	VAMP2_RAT Vesicle-associated membrane protein 2
	1kil[18]	C	SN25_HUMAN SNAP-25 N-terminal SNARE motif[72 aa]	A	75.0 /36.9	4 /4	VAMP2_RAT Synaptobrevin SNARE motif
	1sfc[3]	C	SNP25_RAT PROTEIN (SNAP-25B)[77 aa]	A	75.0 /36.4	4 /4	VAMP2_RAT PROTEIN (SYNAPTOBREVIN 2)
	2n1t[1]	C	SNP25_HUMAN Synaptosomal-associated protein 25[77 aa]	A	60.0 /36.4	5 /5	VAMP2_RAT Vesicle-associated membrane protein 2
	3hd7[4]	C	SNP25_RAT Synaptosomal-associated protein 25[75 aa]	A	75.0 /35.5	4 /4	VAMP2_RAT Vesicle-associated membrane protein 2
	1kil[27]	D	SN25_HUMAN SNAP-25 C-terminal SNARE motif[66 aa]	A	44.0 /36.9	25 /25	VAMP2_RAT Synaptobrevin SNARE motif
	3j96[4]	G	SNAA_RAT Alpha-soluble NSF attachment protein[286 aa]	K	0.0 /34.4	2 /2	VAMP2_RAT Vesicle-associated membrane protein 2
	3j96[4]	H	SNAA_RAT Alpha-soluble NSF attachment protein[286 aa]	K	12.5 /34.4	8 /8	VAMP2_RAT Vesicle-associated membrane protein 2
	3j96[4]	I	SNAA_RAT Alpha-soluble NSF attachment protein[286 aa]	K	12.5 /34.4	8 /8	VAMP2_RAT Vesicle-associated membrane protein 2
	3j99[1]	J	SNAA_RAT Alpha-soluble NSF attachment protein[286 aa]	K	100.0 /34.4	1 /1	VAMP2_RAT Vesicle-associated membrane protein 2
	6ip1[1]	E	A5D7S0_BOVIN Alpha-soluble NSF attachment protein[292 aa]	A	20.0 /33.9	5 /5	VAMP2_RAT Vesicle-associated membrane protein 2
	6ip1[1]	G	A5D7S0_BOVIN Alpha-soluble NSF attachment protein[292 aa]	A	50.0 /33.9	4 /4	VAMP2_RAT Vesicle-associated membrane protein 2
	6ip1[1]	H	A5D7S0_BOVIN Alpha-soluble NSF attachment protein[292 aa]	A	12.5 /33.9	8 /8	VAMP2_RAT Vesicle-associated membrane protein 2
	6mdm[2]	J	SNAA_RAT Alpha-soluble NSF attachment protein[286 aa]	I	50.0 /34.4	2 /2	VAMP2_RAT Vesicle-associated membrane protein 2
	6mdm[2]	K	SNAA_RAT Alpha-soluble NSF attachment protein[286 aa]	I	28.6 /34.4	7 /7	VAMP2_RAT Vesicle-associated membrane protein 2
	3j96[4]	M	Synaptosomal-associated protein 25[131 aa]	K	47.8 /34.4	23 /23	VAMP2_RAT Vesicle-associated membrane protein 2
	6mdm[2]	G	SNP25_RAT Synaptosomal-associated protein 25[147 aa]	I	42.1 /34.4	19 /19	VAMP2_RAT Vesicle-associated membrane protein 2
	1l4a[1]	B	O46345_LOLPE S-SYNTAXIN[82 aa]	A	46.2 /33.9	26 /26	SYB_LOLPE SYNAPTOBREVIN
	1l4a[1]	C	Q8T3S4_LOLPE S-SNAP25 fusion protein[73 aa]	A	100.0 /33.9	3 /3	SYB_LOLPE SYNAPTOBREVIN
	1l4a[1]	D	Q8T3S4_LOLPE S-SNAP25 fusion protein[75 aa]	A	39.1 /33.9	23 /25	SYB_LOLPE SYNAPTOBREVIN
	1l4a[1]	E	Q95PA1_LOLPE SYNAPHIN A[28 aa]	A	16.7 /33.9	6 /6	SYB_LOLPE SYNAPTOBREVIN
	5ccg[3]	F	SYT1_RAT Synaptotagmin-1[275 aa]	A	40.0 /34.9	5 /5	VAMP2_RAT Vesicle-associated membrane protein 2
	6ip1[1]	C	SNP25_RAT Synaptosomal-associated protein 25[65 aa]	A	66.7 /33.9	3 /3	VAMP2_RAT Vesicle-associated membrane protein 2
	2nps[1]	B	O70319_RAT Syntaxin 13[68 aa]	A	43.3 /32.3	30 /31	VAMP4_MOUSE Vesicle-associated membrane protein 4
	2nps[1]	C	VTI1A_RAT Vesicle transport through interaction with t-SNARE..	A	60.0 /32.3	5 /5	VAMP4_MOUSE Vesicle-associated membrane protein 4
	2nps[1]	D	STX6_HUMAN Syntaxin-6[63 aa]	A	40.0 /32.3	25 /26	VAMP4_MOUSE Vesicle-associated membrane protein 4
	3b5n[3]	B	SSO1_YEAST Protein SSO1[69 aa]	A	37.9 /28.8	29 /29	SNC1_YEAST Synaptobrevin homolog 1
	3b5n[3]	C	SEC9_YEAST Protein transport protein SEC9[70 aa]	A	75.0 /28.8	4 /4	SNC1_YEAST Synaptobrevin homolog 1
	3b5n[3]	D	SEC9_YEAST Protein transport protein SEC9[64 aa]	A	46.2 /28.8	26 /26	SNC1_YEAST Synaptobrevin homolog 1
	3.a³:asym_id for the contact molecule. 4.a⁴:asym_id for the template homologue. 5.identity[%]⁵:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon⁶:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
COMPOUND
100	pdb_id	contact mol		homologue
	pdb_id	a³	description	a⁴	identity[%]⁵	Ncon⁶	description
	3hd7[1]	I	GGG glycylglycylglycine[13 atoms]	A	50.0 /35.5	2 /2	VAMP2_RAT Vesicle-associated membrane protein 2
	3hd7[1]	J	GGG glycylglycylglycine[13 atoms]	A	100.0 /35.5	2 /2	VAMP2_RAT Vesicle-associated membrane protein 2
	3hd7[1]	M	GGG glycylglycylglycine[13 atoms]	E	50.0 /35.5	2 /2	VAMP2_RAT Vesicle-associated membrane protein 2
	3.a³:asym_id for the contact molecule. 4.a⁴:asym_id for the template homologue. 5.identity[%]⁵:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon⁶:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
METAL
100	pdb_id	contact mol		homologue
	pdb_id	a³	description	a⁴	identity[%]⁵	Ncon⁶	description
	1kil[1]	F	MG MAGNESIUM ION[1 atoms]	A	0.0 /36.9	1 /1	VAMP2_RAT Synaptobrevin SNARE motif
	1sfc[1]	M	SR STRONTIUM ION[1 atoms]	A	0.0 /36.4	1 /1	VAMP2_RAT PROTEIN (SYNAPTOBREVIN 2)
	1sfc[1]	N	SR STRONTIUM ION[1 atoms]	A	33.3 /36.4	3 /3	VAMP2_RAT PROTEIN (SYNAPTOBREVIN 2)
	1n7s[1]	E	CA CALCIUM ION[1 atoms]	A	0.0 /34.9	1 /1	VAMP2_RAT vesicle-associated membrane protein 2
	5ccg[2]	L	CA CALCIUM ION[1 atoms]	A	0.0 /34.9	1 /1	VAMP2_RAT Vesicle-associated membrane protein 2
	5ccg[3]	M	CA CALCIUM ION[1 atoms]	A	0.0 /34.9	1 /1	VAMP2_RAT Vesicle-associated membrane protein 2
	6wvw[1]	M	CA CALCIUM ION[1 atoms]	E	0.0 /34.9	1 /1	VAMP2_RAT Vesicle-associated membrane protein 2
	3.a³:asym_id for the contact molecule. 4.a⁴:asym_id for the template homologue. 5.identity[%]⁵:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon⁶:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
PRECIPITANT
100	pdb_id	contact mol		homologue
	pdb_id	a³	description	a⁴	identity[%]⁵	Ncon⁶	description
	3hd7[1]	N	SO4 SULFATE ION[5 atoms]	E	50.0 /35.5	2 /2	VAMP2_RAT Vesicle-associated membrane protein 2
	3hd7[1]	O	SO4 SULFATE ION[5 atoms]	E	33.3 /35.5	3 /3	VAMP2_RAT Vesicle-associated membrane protein 2
	1n7s[1]	F	MPD (4S)-2-METHYL-2,4-PENTANEDIOL[8 atoms]	A	100.0 /34.9	1 /1	VAMP2_RAT vesicle-associated membrane protein 2
	1n7s[1]	I	MPD (4S)-2-METHYL-2,4-PENTANEDIOL[8 atoms]	A	0.0 /34.9	1 /1	VAMP2_RAT vesicle-associated membrane protein 2
	1sfc[1]	O	MPD (4S)-2-METHYL-2,4-PENTANEDIOL[8 atoms]	A	100.0 /36.4	3 /3	VAMP2_RAT PROTEIN (SYNAPTOBREVIN 2)
	1sfc[3]	P	MPD (4S)-2-METHYL-2,4-PENTANEDIOL[8 atoms]	A	0.0 /36.4	2 /2	VAMP2_RAT PROTEIN (SYNAPTOBREVIN 2)
	6wvw[1]	L	MPD (4S)-2-METHYL-2,4-PENTANEDIOL[8 atoms]	E	100.0 /34.9	1 /1	VAMP2_RAT Vesicle-associated membrane protein 2
	3.a³:asym_id for the contact molecule. 4.a⁴:asym_id for the template homologue. 5.identity[%]⁵:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon⁶:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.

Contact Molecules for Homologous Proteins

Summary Bars[0.0 %]

UniProt Feature Tables [Q9BV40(VAMP8_HUMAN)]