HOMCOS(prot_sch_conbars.cgi):

		Contact Molecules for Homologous Proteins
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PID

QueryLength

Homolgous Sequence in PDB

UniProt Query

TITLE

1700825

678

217

Q96C10(DHX58_HUMAN)

RecName: Full=ATP-dependent RNA helicase DHX58 ; EC=3.6.4.13 ;AltName: Full=ATP-dependent helicase LGP2 ;AltName: Full=Protein D11Lgp2 homolog;AltName: Full=RIG-I-like receptor 3; Short=RLR-3;AltName: Full=RIG-I-like receptor LGP2; Short=RLR;

QUERYSEQ

MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYL
ELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV
DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHC
NVVVRYGLLTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQLLCINCMVAVGHGSDLRKVEGTHHVNVNPNFSNYYNVSRDPVVINKV
FKDWKPGGVISCRNCGEVWGLQMIYKSVKLPVLKVRSMLLETPQGRIQAKKWSRVPFSVPDFDFLQHCAENLSDLSLD

[BLAST file for PDB] (plain) (bar) (multiple alignment) [BLAST for UniProt: (plain) (bar) (multiple alignment) (PSSM file) ]

UniProt Feature Tables [Q96C10(DHX58_HUMAN)]

678
	region	name	description
	1-678	CHAIN	/note="ATP-dependent RNA helicase DHX58" /id="PRO_0000102010"
	11-188	DOMAIN	/note="Helicase ATP-binding"
	350-514	DOMAIN	/note="Helicase C-terminal"
	539-669	DOMAIN	/note="RLR CTR"
	572-655	REGION	/note="RNA-binding"
	489-546	COILED
	24-31	BINDING	/ligand="ATP" /ligand_id="ChEBI:CHEBI:30616"
	556-556	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105"
	559-559	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105"
	612-612	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105"
	615-615	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105"
	510-678	DISORDER	predicted by DISOPRED

MONOMER

678

pdb_id a¹ identity[%]² description

5jb2 A 53.2 G0YYQ5_CHICK LGP2

1.a¹:asym_id for the homologue. 2.identity[%]²:sequence identity between the query and the homologue.

HETERO

678 pdb_id contact mol homologue

a³ description a⁴ identity[%]⁵ Ncon⁶ description

4i1s[1] B V_SV5 Non-structural protein V[52 aa] A 68.0
/45.0 25
/26 A7LCX1_PIG A7LCX1_PIG Melanoma differentiation associated protein-5

7jl0[4] D TRI65_HUMAN Tripartite motif-containing protein 65[180 aa] C 10.0
/44.9 10
/11 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..

6p4o[3] B Q970I1_SULTO Endonuclease Bax1[479 aa] A 32.0
/37.7 25
/27 Q970I2_SULTO DNA-dependent ATPase XPBII

6p4f[4] B Q970I1_SULTO Endonuclease Bax1[373 aa] A 26.1
/37.7 23
/23 Q970I2_SULTO DNA-dependent ATPase XPBII

7jl1[4] D RN135_HUMAN E3 ubiquitin-protein ligase RNF135[171 aa] A 20.0
/35.6 10
/10 DDX58_HUMAN Antiviral innate immune response receptor RIG-I

7jl3[2] D RN135_HUMAN E3 ubiquitin-protein ligase RNF135[169 aa] A 0.0
/35.6 1
/1 DDX58_HUMAN Antiviral innate immune response receptor RIG-I

2yjt[1] A D8AM26_ECOLX REGULATOR OF RIBONUCLEASE ACTIVITY A[158 aa] D 28.6
/31.0 14
/17 SRMB_ECOLI ATP-DEPENDENT RNA HELICASE SRMB

7w0a[8] B M9MRT5_DROME Loquacious, isoform D[16 aa] A 33.3
/31.0 6
/27 A1ZAW0_DROME Dicer-2, isoform A

7w0d[1] C M9MRT5_DROME Loquacious, isoform D[13 aa] E 14.3
/31.0 7
/25 A1ZAW0_DROME Dicer-2, isoform A

8hf0[4] C Q9VLW8_DROME LD06392p[126 aa] A 0.0
/31.0 1
/31 A1ZAW0_DROME Dicer-2, isoform A

8hf0[3] C Q9VLW8_DROME LD06392p[126 aa] D 100.0
/31.0 1
/11 A1ZAW0_DROME Dicer-2, isoform A

8hf1[1] B M9MRT5_DROME Loquacious, isoform D[16 aa] A 22.2
/31.0 9
/23 A1ZAW0_DROME Dicer-2, isoform A

6yvh[1] E CWC22_HUMAN Pre-mRNA-splicing factor CWC22 homolog[272 aa] H 25.0
/29.0 4
/21 IF4A3_HUMAN Eukaryotic initiation factor 4A-III

3.a³:asym_id for the contact molecule. 4.a⁴:asym_id for the template homologue. 5.identity[%]⁵:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon⁶:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.

NUCLEOTIDE

678 pdb_id contact mol homologue

a³ description a⁴ identity[%]⁵ Ncon⁶ description

3eqt[2] C 5'-R(*GP*CP*GP*CP*GP*CP*GP*C)-3' A 100.0
/100.0 15
/15 DHX58_HUMAN ATP-dependent RNA helicase DHX58

3eqt[2] D 5'-R(*GP*CP*GP*CP*GP*CP*GP*C)-3' A 100.0
/100.0 6
/6 DHX58_HUMAN ATP-dependent RNA helicase DHX58

5jaj[1] B RNA (5'-R(P*GP*GP*UP*AP*CP*GP*UP*AP*CP*CP*C)-3') A 42.3
/53.9 26
/26 G0YYQ5_CHICK LGP2

5jbg[1] B RNA (5'-R(*GPPP*GP*AP*GP*CP*GP*UP*GP*CP*CP*GP*GP*G.. A 47.8
/53.4 67
/67 G0YYQ5_CHICK LGP2

5jbj[1] B RNA (5'-R(P*GP*GP*UP*AP*GP*CP*GP*CP*UP*AP*CP*C)-3'.. A 38.5
/53.2 26
/26 G0YYQ5_CHICK LGP2

5jbj[1] C RNA (5'-R(P*GP*GP*UP*AP*GP*CP*GP*CP*UP*AP*CP*C)-3'.. A 67.6
/53.2 34
/34 G0YYQ5_CHICK LGP2

5jb2[1] B RNA (5'-R(*GPPP*GP*UP*AP*CP*GP*UP*AP*CP*CP*C)-3') .. A 42.3
/53.2 26
/26 G0YYQ5_CHICK LGP2

5jb2[1] C RNA (5'-R(*GPPP*GP*UP*AP*CP*GP*UP*AP*CP*C)-3') A 63.9
/53.2 36
/36 G0YYQ5_CHICK LGP2

4gl2[2] C RNA (5'-R(*AP*UP*CP*CP*GP*CP*GP*GP*CP*CP*CP*U)-3').. A 57.1
/47.2 14
/14 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..

4gl2[2] F RNA (5'-R(P*AP*GP*GP*GP*CP*CP*GP*CP*GP*GP*AP*U)-3'.. A 69.0
/47.2 29
/29 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..

5jc7[1] C RNA (5'-R(P*GP*GP*AP*CP*GP*UP*CP*AP*UP*GP*CP*GP*CP.. A 50.0
/45.3 20
/20 D9N195_CHICK Melanoma differentiation associated protein-5

5jc7[1] C RNA (5'-R(P*GP*GP*AP*CP*GP*UP*CP*AP*UP*GP*CP*GP*CP.. B 63.3
/45.4 30
/30 D9N195_CHICK Melanoma differentiation associated protein-5

5jc7[1] D RNA (5'-R(P*GP*GP*GP*AP*CP*GP*UP*CP*AP*UP*GP*CP*GP.. A 64.5
/45.3 31
/31 D9N195_CHICK Melanoma differentiation associated protein-5

5jc7[1] D RNA (5'-R(P*GP*GP*GP*AP*CP*GP*UP*CP*AP*UP*GP*CP*GP.. B 47.4
/45.4 19
/19 D9N195_CHICK Melanoma differentiation associated protein-5

7jl2[3] A RNA (44-MER) C 57.1
/44.9 14
/14 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..

7jl2[3] B RNA (44-MER) C 57.1
/44.9 21
/21 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..

5jaj[1] C RNA (5'-R(P*GP*GP*UP*AP*CP*GP*UP*AP*CP*C)-3') A 62.2
/53.9 37
/37 G0YYQ5_CHICK LGP2

5jc3[6] B RNA (5'-R(P*GP*GP*UP*AP*CP*GP*UP*AP*CP*C)-3') A 50.0
/43.9 20
/20 D9N195_CHICK Melanoma differentiation associated protein-5

5jc3[5] C RNA (5'-R(P*GP*GP*UP*AP*CP*GP*UP*AP*CP*C)-3') A 66.7
/43.9 30
/30 D9N195_CHICK Melanoma differentiation associated protein-5

5jcf[1] C RNA (5'-R(P*AP*GP*GP*UP*AP*CP*GP*UP*AP*CP*C)-3') A 69.0
/44.5 29
/29 D9N195_CHICK Melanoma differentiation associated protein-5

7niq[1] B RNA (5'-R(P*CP*AP*AP*GP*CP*CP*GP*AP*GP*GP*AP*GP*AP.. A 61.1
/44.2 18
/18 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..

7niq[1] C RNA (5'-R(P*AP*UP*CP*UP*CP*CP*UP*CP*GP*GP*CP*UP*UP.. A 68.2
/44.2 22
/22 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..

6g1s[1] B RNA (5'-R(P*UP*CP*CP*AP*UP*GP*CP*GP*CP*AP*UP*GP*AP.. A 40.0
/44.7 15
/15 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..

6g1x[1] B RNA (5'-R(P*UP*CP*CP*AP*UP*GP*CP*GP*CP*AP*UP*GP*AP.. A 36.4
/45.4 11
/11 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..

6h61[3] B RNA (5'-R(P*UP*CP*CP*AP*UP*GP*CP*GP*CP*AP*UP*GP*AP.. A 53.3
/44.7 15
/15 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..

7bkq[2] B RNA (5'-R(P*UP*CP*CP*AP*UP*GP*CP*GP*CP*AP*UP*GP*AP.. A 58.3
/44.0 12
/12 IFIH1_MOUSE Isoform 2 of Interferon-induced helicase C domain-..

7bkq[1] B RNA (5'-R(P*UP*CP*CP*AP*UP*GP*CP*GP*CP*AP*UP*GP*AP.. A 0.0
/44.0 2
/2 IFIH1_MOUSE Isoform 2 of Interferon-induced helicase C domain-..

7bkq[1] B RNA (5'-R(P*UP*CP*CP*AP*UP*GP*CP*GP*CP*AP*UP*GP*AP.. A 0.0
/44.0 2
/2 IFIH1_MOUSE Isoform 2 of Interferon-induced helicase C domain-..

6g1s[1] C RNA (5'-R(P*CP*GP*UP*CP*AP*UP*GP*CP*GP*CP*AP*UP*GP.. A 73.1
/44.7 26
/26 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..

6g1x[3] C RNA (5'-R(P*CP*GP*UP*CP*AP*UP*GP*CP*GP*CP*AP*UP*GP.. A 72.0
/45.4 25
/25 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..

6h61[3] C RNA (5'-R(P*CP*GP*UP*CP*AP*UP*GP*CP*GP*CP*AP*UP*GP.. A 74.1
/44.7 27
/27 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..

7bkq[1] C RNA (5'-R(P*CP*GP*UP*CP*AP*UP*GP*CP*GP*CP*AP*UP*GP.. A 0.0
/44.0 1
/1 IFIH1_MOUSE Isoform 2 of Interferon-induced helicase C domain-..

6gkh[1] B RNA (5'-R(P*GP*UP*CP*AP*AP*GP*CP*CP*GP*AP*GP*GP*AP.. A 60.0
/44.3 15
/15 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..

7nic[1] B RNA (5'-R(P*GP*UP*CP*AP*AP*GP*CP*CP*GP*AP*GP*GP*AP.. A 42.1
/44.0 19
/19 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..

6gkh[2] C RNA (5'-R(P*UP*CP*UP*CP*CP*UP*CP*GP*GP*CP*UP*UP*GP.. A 57.7
/44.3 26
/26 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..

6g19[1] B RNA (5'-R(P*CP*AP*AP*GP*CP*CP*GP*AP*GP*GP*AP*GP*AP.. A 47.6
/43.9 21
/21 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..

6gjz[2] B RNA (5'-R(P*CP*AP*AP*GP*CP*CP*GP*AP*GP*GP*AP*GP*AP.. A 47.6
/43.9 21
/21 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..

7bkp[1] C RNA (5'-R(P*CP*AP*AP*GP*CP*CP*GP*AP*GP*GP*AP*GP*AP.. A 50.0
/43.2 20
/20 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..

6g19[1] C RNA (5'-R(P*CP*UP*CP*UP*CP*CP*UP*CP*GP*GP*CP*UP*UP.. A 65.5
/43.9 29
/29 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..

6gjz[3] C RNA (5'-R(P*CP*UP*CP*UP*CP*CP*UP*CP*GP*GP*CP*UP*UP.. A 66.7
/43.9 30
/30 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..

7eld[1] B pri-miRNA 166f A 31.2
/38.0 32
/74 DCL1_ARATH Endoribonuclease Dicer homolog 1

7ele[1] B pre-miRNA 166f A 32.1
/38.0 28
/63 DCL1_ARATH Endoribonuclease Dicer homolog 1

5zal[1] C RNA (73-mer) A 20.0
/37.9 5
/31 DICER_HUMAN Endoribonuclease Dicer

5zam[1] C RNA (73-mer) A 50.0
/37.9 2
/27 DICER_HUMAN Endoribonuclease Dicer

6p4f[2] E DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*AP*AP*CP*AP*TP*CP*.. A 23.1
/37.7 13
/18 Q970I2_SULTO DNA-dependent ATPase XPBII

6p4f[1] F DNA (5'-D(P*TP*GP*TP*AP*GP*GP*TP*TP*TP*CP*CP*AP*TP.. A 15.8
/37.7 19
/21 Q970I2_SULTO DNA-dependent ATPase XPBII

6p4f[1] H DNA (5'-D(P*TP*GP*TP*AP*GP*GP*TP*TP*TP*CP*CP*AP*TP.. C 22.2
/37.7 18
/19 Q970I2_SULTO DNA-dependent ATPase XPBII

4a36[1] E 5'-R(*GP*CP*AP*UP*GP*CP*GP*AP*CP*CP*UP*CP*UP*GP *U.. B 14.3
/36.2 7
/7 D3TI84_ANAPL RETINOIC ACID INDUCIBLE PROTEIN I

4a36[1] F 5'-R(*UP*CP*AP*AP*AP*CP*AP*GP*AP*GP*GP*UP*CP*GP *C.. B 54.2
/36.2 24
/25 D3TI84_ANAPL RETINOIC ACID INDUCIBLE PROTEIN I

4a36[1] C 5'-R(*GP*CP*AP*UP*GP*CP*GP*AP*CP*CP*UP*CP*UP*GP *U.. A 14.3
/36.2 7
/7 D3TI84_ANAPL RETINOIC ACID INDUCIBLE PROTEIN I

4a36[1] D 5'-R(*UP*CP*AP*AP*AP*CP*AP*GP*AP*GP*GP*UP*CP*GP *C.. A 52.2
/36.2 23
/24 D3TI84_ANAPL RETINOIC ACID INDUCIBLE PROTEIN I

5e3h[1] B RNA (5'-R(*CP*GP*AP*CP*GP*CP*UP*AP*GP*CP*GP*U)-3').. A 55.6
/35.6 18
/18 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58

5e3h[1] C RNA (5'-R(*CP*GP*AP*CP*GP*CP*UP*AP*GP*CP*GP*U)-3').. A 59.3
/35.6 27
/27 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58

4d25[2] B 5'-R(*UP*GP*AP*CP*AP*UP)-3' A 33.3
/35.6 9
/24 O01378_BOMMO BMVLG PROTEIN

7jl3[3] G dsRNA strand1 A 50.0
/35.6 14
/14 DDX58_HUMAN Antiviral innate immune response receptor RIG-I

7jl3[3] H dsRNA strand 2 A 62.5
/35.6 24
/24 DDX58_HUMAN Antiviral innate immune response receptor RIG-I

7jl0[1] A RNA (5'-R(P*GP*AP*CP*UP*GP*AP*CP*UP*GP*AP*CP*UP*GP.. C 63.6
/44.9 11
/11 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..

7jl1[1] B dsRNA strand 1 A 47.1
/35.6 17
/17 DDX58_HUMAN Antiviral innate immune response receptor RIG-I

7jl0[1] B RNA (5'-R(P*UP*CP*AP*GP*UP*CP*AP*GP*UP*CP*AP*GP*UP.. C 61.9
/44.9 21
/21 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..

7jl1[1] C dsRNA strand 2 A 59.3
/35.6 27
/27 DDX58_HUMAN Antiviral innate immune response receptor RIG-I

6bu9[1] B RNA (5'-R(*GP*GP*AP*GP*GP*UP*AP*GP*UP*AP*GP*GP*UP*.. A 100.0
/35.4 1
/1 A1ZAW0_DROME Dicer-2, isoform A

5f9h[6] B RNA (5'-R(P*AP*AP*UP*AP*UP*AP*AP*UP*AP*GP*UP*GP*AP.. A 55.6
/35.3 36
/37 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58

6kyv[6] A RNA (5'-R(*GP*GP*UP*AP*GP*AP*CP*GP*CP*UP*UP*CP*GP*.. B 55.6
/35.3 45
/46 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58

7to2[1] B p3SLR30 A 45.6
/35.1 57
/57 DDX58_HUMAN Antiviral innate immune response receptor RIG-I

6gpg[1] A RNA (5'-R(*CP*GP*AP*CP*GP*CP*UP*AP*GP*CP*GP*UP*CP*.. C 52.6
/35.1 19
/19 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58

6gpg[1] B RNA (5'-R(*CP*GP*AP*CP*GP*CP*UP*AP*GP*CP*GP*UP*CP*.. C 58.6
/35.1 29
/29 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58

5f98[12] B RNA (5'-R(P*GP*AP*AP*UP*AP*UP*AP*AP*UP*AP*GP*UP*GP.. A 59.0
/35.1 39
/40 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58

7tny[2] B p2dsRNA A 38.5
/34.8 26
/26 DDX58_HUMAN Antiviral innate immune response receptor RIG-I

7tny[2] C p2dsRNA A 58.6
/34.8 29
/29 DDX58_HUMAN Antiviral innate immune response receptor RIG-I

8dvu[1] B OHSLR30 A 47.3
/35.0 55
/55 DDX58_HUMAN Antiviral innate immune response receptor RIG-I

7to0[1] B OHdsRNA A 42.3
/35.0 26
/27 DDX58_HUMAN Antiviral innate immune response receptor RIG-I

7to0[1] C OHdsRNA A 60.7
/35.0 28
/28 DDX58_HUMAN Antiviral innate immune response receptor RIG-I

8dvs[1] B OHSLR30 A 47.9
/35.0 48
/48 DDX58_HUMAN Antiviral innate immune response receptor RIG-I

7tnx[1] B p3dsRNAa A 43.5
/34.7 23
/24 DDX58_HUMAN Antiviral innate immune response receptor RIG-I

7tnx[1] C p3dsRNAb A 61.9
/34.7 21
/21 DDX58_HUMAN Antiviral innate immune response receptor RIG-I

4ay2[1] B 5'-R-PPP(GP*GP*CP*GP*CP*GP*GP*CP*UP*UP*CP*GP*GP*CP.. A 38.7
/34.6 31
/31 DDX58_HUMAN PROBABLE ATP-DEPENDENT RNA HELICASE DDX58

2ykg[4] B 5'-R(*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP)-3' A 43.8
/34.5 16
/16 DDX58_HUMAN PROBABLE ATP-DEPENDENT RNA HELICASE DDX58

2ykg[4] C 5'-R(*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP)-3' A 37.5
/34.5 16
/16 DDX58_HUMAN PROBABLE ATP-DEPENDENT RNA HELICASE DDX58

7to1[1] B p3SLR30 A 52.5
/34.3 40
/41 DDX58_HUMAN Antiviral innate immune response receptor RIG-I

8dvr[1] B p3SLR30 A 54.5
/34.3 33
/33 DDX58_HUMAN Antiviral innate immune response receptor RIG-I

4a2x[2] E 5'-R(*GP*GP*GP*AP*GP*AP*AP*CP*AP*AP*CP*GP*CP*GP)-3.. A 44.4
/32.4 9
/9 D3TI84_ANAPL RETINOIC ACID INDUCIBLE PROTEIN I

4a2x[2] E 5'-R(*GP*GP*GP*AP*GP*AP*AP*CP*AP*AP*CP*GP*CP*GP)-3.. B 0.0
/32.4 1
/1 D3TI84_ANAPL RETINOIC ACID INDUCIBLE PROTEIN I

4a2x[2] F 5'-R(*CP*GP*CP*GP*UP*UP*GP*UP*UP*CP*UP*CP*CP*CP)-3.. A 0.0
/32.4 2
/2 D3TI84_ANAPL RETINOIC ACID INDUCIBLE PROTEIN I

4a2x[2] F 5'-R(*CP*GP*CP*GP*UP*UP*GP*UP*UP*CP*UP*CP*CP*CP)-3.. B 44.4
/32.4 9
/9 D3TI84_ANAPL RETINOIC ACID INDUCIBLE PROTEIN I

3lrn[2] C RNA (5'-R(*(GTP)P*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP*GP.. A 46.7
/31.2 15
/15 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58

3lrn[2] D RNA (5'-R(*(GTP)P*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP*GP.. A 33.3
/31.2 3
/3 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58

3lrr[2] C RNA (5'-R(*(ATP)P*UP*AP*UP*AP*UP*AP*UP*AP*UP*AP*U).. A 46.7
/31.2 15
/15 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58

3lrr[2] D RNA (5'-R(*(ATP)P*UP*AP*UP*AP*UP*AP*UP*AP*UP*AP*U).. A 50.0
/31.2 4
/4 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58

3ncu[2] C 5'-R(*(GDP)P*AP*CP*GP*CP*UP*AP*GP*CP*GP*UP*C)-3' A 61.5
/31.2 13
/13 DDX58_HUMAN RIG-I

3ncu[2] D 5'-R(*(GDP)P*AP*CP*GP*CP*UP*AP*GP*CP*GP*UP*C)-3' A 50.0
/31.2 4
/4 DDX58_HUMAN RIG-I

7bai[4] C RNA (5'-R(*(GDP)P*AP*CP*GP*CP*UP*AP*GP*CP*GP*UP*C).. A 72.7
/31.2 11
/11 DDX58_HUMAN Antiviral innate immune response receptor RIG-I

7bai[4] D RNA (5'-R(*(GDP)P*AP*CP*GP*CP*UP*AP*GP*CP*GP*UP*C).. A 66.7
/31.2 3
/3 DDX58_HUMAN Antiviral innate immune response receptor RIG-I

7bah[2] C RNA (5'-R(*GP*AP*CP*GP*CP*UP*AP*GP*CP*GP*UP*C)-3').. A 63.6
/31.2 11
/11 DDX58_HUMAN Antiviral innate immune response receptor RIG-I

7bah[2] D RNA (5'-R(*GP*AP*CP*GP*CP*UP*AP*GP*CP*GP*UP*C)-3').. A 66.7
/31.2 3
/3 DDX58_HUMAN Antiviral innate immune response receptor RIG-I

7mk1[2] C DNA (41-MER) A 35.3
/31.2 17
/17 DDX58_HUMAN Antiviral innate immune response receptor RIG-I

7v6c[1] C RNA (5'-R(P*UP*GP*AP*GP*G)-3') A 0.0
/31.2 3
/5 A1ZAW0_DROME Dicer-2, isoform A

7v6c[1] D RNA (5'-R(P*CP*CP*UP*CP*UP*CP*U)-3') A 57.1
/31.2 7
/8 A1ZAW0_DROME Dicer-2, isoform A

3og8[2] C RNA (5'-R(*GP*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP*.. A 63.6
/31.0 11
/11 DDX58_HUMAN ATP-dependent RNA helicase DDX58

3og8[2] D RNA (5'-R(*GP*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP*.. A 50.0
/31.0 4
/4 DDX58_HUMAN ATP-dependent RNA helicase DDX58

7w0a[2] C RNA (30-MER) A 0.0
/31.0 5
/17 A1ZAW0_DROME Dicer-2, isoform A

7w0a[2] D RNA (32-MER) A 47.1
/31.0 17
/29 A1ZAW0_DROME Dicer-2, isoform A

7w0c[1] C RNA (35-MER) A 0.0
/31.0 6
/20 A1ZAW0_DROME Dicer-2, isoform A

7w0c[1] D RNA (35-MER) A 50.0
/31.0 18
/29 A1ZAW0_DROME Dicer-2, isoform A

7w0d[2] B dsRNA D 47.1
/31.0 17
/37 A1ZAW0_DROME Dicer-2, isoform A

7w0d[2] F dsRNA D 0.0
/31.0 5
/22 A1ZAW0_DROME Dicer-2, isoform A

7w0e[1] A dsRNA C 0.0
/31.0 7
/38 A1ZAW0_DROME Dicer-2, isoform A

7w0e[1] B dsRNA C 43.8
/31.0 16
/61 A1ZAW0_DROME Dicer-2, isoform A

7w0f[1] E siRNA A 0.0
/31.0 8
/19 A1ZAW0_DROME Dicer-2, isoform A

7w0f[1] F siRNA A 46.7
/31.0 15
/32 A1ZAW0_DROME Dicer-2, isoform A

8hf0[2] F RNA (52-MER) A 0.0
/31.0 7
/15 A1ZAW0_DROME Dicer-2, isoform A

8hf0[2] G RNA (52-MER) A 47.1
/31.0 17
/24 A1ZAW0_DROME Dicer-2, isoform A

8hf1[3] E RNA (5'-R(P*GP*AP*GP*AP*CP*UP*UP*GP*G)-3') A 0.0
/31.0 6
/13 A1ZAW0_DROME Dicer-2, isoform A

8hf1[3] H RNA (5'-R(P*CP*CP*AP*AP*GP*UP*CP*UP*CP*UP*U)-3') A 60.0
/31.0 15
/23 A1ZAW0_DROME Dicer-2, isoform A

2db3[3] A 5'-R(*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3' E 44.4
/27.0 9
/21 VASA_DROME ATP-dependent RNA helicase vasa

2db3[1] D 5'-R(*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3' H 44.4
/27.0 9
/21 VASA_DROME ATP-dependent RNA helicase vasa

3.a³:asym_id for the contact molecule. 4.a⁴:asym_id for the template homologue. 5.identity[%]⁵:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon⁶:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.

COMPOUND

678 pdb_id contact mol homologue

a³ description a⁴ identity[%]⁵ Ncon⁶ description

2db3[4] J ANP
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER[31 ato.. E 60.0
/27.0 5
/23 VASA_DROME ATP-dependent RNA helicase vasa

3tbk[4] B ANP
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER[31 ato.. A 77.8
/34.9 9
/12 DDX58_MOUSE RIG-I Helicase Domain

4d25[1] C ANP
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER[31 ato.. A 100.0
/35.6 2
/22 O01378_BOMMO BMVLG PROTEIN

6gjz[1] E ANP
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER[31 ato.. A 80.0
/43.9 10
/10 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..

6gkm[2] E ATP
ADENOSINE-5'-TRIPHOSPHATE[31 atoms] A 80.0
/43.3 10
/10 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..

5f98[6] O M7G
7N-METHYL-8-HYDROGUANOSINE-5'-DIPHOSPHATE[29 atoms.. A 28.6
/35.1 7
/7 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58

3zd7[22] F ADP
ADENOSINE-5'-DIPHOSPHATE[27 atoms] A 77.8
/34.9 9
/14 DDX58_HUMAN PROBABLE ATP-DEPENDENT RNA HELICASE DDX58

4d26[1] C ADP
ADENOSINE-5'-DIPHOSPHATE[27 atoms] A 100.0
/35.6 1
/19 O01378_BOMMO BMVLG PROTEIN

6gkh[4] D ADP
ADENOSINE-5'-DIPHOSPHATE[27 atoms] A 84.6
/44.3 13
/13 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..

7jl0[4] F ADP
ADENOSINE-5'-DIPHOSPHATE[27 atoms] C 81.8
/44.9 11
/11 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..

7jl1[4] E ADP
ADENOSINE-5'-DIPHOSPHATE[27 atoms] A 87.5
/35.6 8
/10 DDX58_HUMAN Antiviral innate immune response receptor RIG-I

7to2[3] E ADP
ADENOSINE-5'-DIPHOSPHATE[27 atoms] A 80.0
/35.1 10
/12 DDX58_HUMAN Antiviral innate immune response receptor RIG-I

5f9h[6] Q GTP
GUANOSINE-5'-TRIPHOSPHATE[32 atoms] A 44.4
/35.3 9
/10 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58

8dvr[1] D GTP
GUANOSINE-5'-TRIPHOSPHATE[32 atoms] A 50.0
/34.3 10
/10 DDX58_HUMAN Antiviral innate immune response receptor RIG-I

3.a³:asym_id for the contact molecule. 4.a⁴:asym_id for the template homologue. 5.identity[%]⁵:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon⁶:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.

METAL

678 pdb_id contact mol homologue

a³ description a⁴ identity[%]⁵ Ncon⁶ description

2qfd[10] K HG
MERCURY (II) ION[1 atoms] A 100.0
/31.2 4
/4 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58

2w4r[4] E HG
MERCURY (II) ION[1 atoms] A 100.0
/100.0 4
/4 DHX58_HUMAN PROBABLE ATP-DEPENDENT RNA HELICASE DHX58

3b6e[1] B NA
SODIUM ION[1 atoms] A 100.0
/54.2 5
/5 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..

3eaq[1] C CL
CHLORIDE ION[1 atoms] A 0.0
/37.1 2
/3 Q72GF3_THET2 Heat resistant RNA dependent ATPase

3eaq[1] D CL
CHLORIDE ION[1 atoms] B 0.0
/37.1 3
/3 Q72GF3_THET2 Heat resistant RNA dependent ATPase

4on9[1] G CL
CHLORIDE ION[1 atoms] B 50.0
/35.2 2
/2 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58

5tnu[1] J CL
CHLORIDE ION[1 atoms] A 0.0
/38.0 2
/2 Q970I2_SULTO DNA-dependent ATPase XPBII

5tnu[1] K CL
CHLORIDE ION[1 atoms] A 0.0
/38.0 3
/3 Q970I2_SULTO DNA-dependent ATPase XPBII

5tnu[4] M CL
CHLORIDE ION[1 atoms] A 0.0
/38.0 1
/2 Q970I2_SULTO DNA-dependent ATPase XPBII

6p4f[1] Q CL
CHLORIDE ION[1 atoms] A 100.0
/37.7 1
/1 Q970I2_SULTO DNA-dependent ATPase XPBII

6p4o[1] I CL
CHLORIDE ION[1 atoms] A 100.0
/37.7 1
/1 Q970I2_SULTO DNA-dependent ATPase XPBII

6p4w[2] I CL
CHLORIDE ION[1 atoms] A 25.0
/37.7 4
/4 Q970I2_SULTO DNA-dependent ATPase XPBII

6p4w[2] J CL
CHLORIDE ION[1 atoms] A 0.0
/37.7 1
/1 Q970I2_SULTO DNA-dependent ATPase XPBII

6p4w[1] L CL
CHLORIDE ION[1 atoms] A 50.0
/37.7 2
/2 Q970I2_SULTO DNA-dependent ATPase XPBII

6p4w[1] BA CL
CHLORIDE ION[1 atoms] C 100.0
/37.7 1
/1 Q970I2_SULTO DNA-dependent ATPase XPBII

6p4w[1] Z CL
CHLORIDE ION[1 atoms] C 100.0
/37.7 1
/2 Q970I2_SULTO DNA-dependent ATPase XPBII

2qfb[10] K ZN
ZINC ION[1 atoms] A 100.0
/31.2 4
/4 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58

2rqa[12] B ZN
ZINC ION[1 atoms] A 100.0
/100.0 6
/6 DHX58_HUMAN ATP-dependent RNA helicase DHX58

2rqb[3] B ZN
ZINC ION[1 atoms] A 100.0
/34.8 5
/5 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..

2ykg[3] D ZN
ZINC ION[1 atoms] A 100.0
/34.5 4
/4 DDX58_HUMAN PROBABLE ATP-DEPENDENT RNA HELICASE DDX58

3lrn[4] E ZN
ZINC ION[1 atoms] A 100.0
/31.2 4
/4 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58

3ncu[2] E ZN
ZINC ION[1 atoms] A 100.0
/31.2 4
/4 DDX58_HUMAN RIG-I

3og8[9] E ZN
ZINC ION[1 atoms] A 100.0
/31.0 4
/4 DDX58_HUMAN ATP-dependent RNA helicase DDX58

4ay2[7] C ZN
ZINC ION[1 atoms] A 100.0
/34.6 4
/4 DDX58_HUMAN PROBABLE ATP-DEPENDENT RNA HELICASE DDX58

4bpb[23] D ZN
ZINC ION[1 atoms] A 100.0
/34.3 4
/4 DDX58_HUMAN PROBABLE ATP-DEPENDENT RNA HELICASE DDX58

4gl2[10] H ZN
ZINC ION[1 atoms] A 100.0
/47.2 5
/5 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..

5jaj[1] D ZN
ZINC ION[1 atoms] A 100.0
/53.9 4
/4 G0YYQ5_CHICK LGP2

5jb2[3] D ZN
ZINC ION[1 atoms] A 100.0
/53.2 4
/4 G0YYQ5_CHICK LGP2

6gjz[5] D ZN
ZINC ION[1 atoms] A 100.0
/43.9 4
/4 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..

6gpg[1] D ZN
ZINC ION[1 atoms] C 100.0
/35.1 5
/5 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58

7bkp[4] D ZN
ZINC ION[1 atoms] A 100.0
/43.2 5
/5 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..

7bkq[2] D ZN
ZINC ION[1 atoms] A 80.0
/44.0 5
/5 IFIH1_MOUSE Isoform 2 of Interferon-induced helicase C domain-..

7jl0[4] E ZN
ZINC ION[1 atoms] C 100.0
/44.9 4
/4 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..

7jl1[4] H ZN
ZINC ION[1 atoms] A 75.0
/35.6 4
/4 DDX58_HUMAN Antiviral innate immune response receptor RIG-I

7tnx[9] D ZN
ZINC ION[1 atoms] A 100.0
/34.7 4
/4 DDX58_HUMAN Antiviral innate immune response receptor RIG-I

3zd7[1] E MG
MAGNESIUM ION[1 atoms] A 100.0
/34.9 2
/2 DDX58_HUMAN PROBABLE ATP-DEPENDENT RNA HELICASE DDX58

4a36[13] H MG
MAGNESIUM ION[1 atoms] A 80.0
/36.2 5
/5 D3TI84_ANAPL RETINOIC ACID INDUCIBLE PROTEIN I

4ay2[1] E MG
MAGNESIUM ION[1 atoms] A 100.0
/34.6 3
/3 DDX58_HUMAN PROBABLE ATP-DEPENDENT RNA HELICASE DDX58

5e3h[5] E MG
MAGNESIUM ION[1 atoms] A 0.0
/35.6 2
/2 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58

5e3h[1] F MG
MAGNESIUM ION[1 atoms] A 100.0
/35.6 1
/1 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58

5e3h[2] G MG
MAGNESIUM ION[1 atoms] A 50.0
/35.6 2
/2 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58

5f98[6] N MG
MAGNESIUM ION[1 atoms] A 50.0
/35.1 2
/2 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58

5f9f[4] N MG
MAGNESIUM ION[1 atoms] A 0.0
/35.1 1
/1 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58

5f9h[2] N MG
MAGNESIUM ION[1 atoms] A 0.0
/35.3 2
/4 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58

5f9h[1] O MG
MAGNESIUM ION[1 atoms] A 0.0
/35.3 2
/2 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58

5f9h[1] P MG
MAGNESIUM ION[1 atoms] A 100.0
/35.3 1
/1 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58

5f9h[1] U MG
MAGNESIUM ION[1 atoms] E 0.0
/35.6 1
/1 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58

5f9h[1] X MG
MAGNESIUM ION[1 atoms] G 50.0
/35.0 2
/2 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58

5jaj[1] G MG
MAGNESIUM ION[1 atoms] A 100.0
/53.9 2
/2 G0YYQ5_CHICK LGP2

5jb2[2] G MG
MAGNESIUM ION[1 atoms] A 100.0
/53.2 2
/2 G0YYQ5_CHICK LGP2

5jb2[1] H MG
MAGNESIUM ION[1 atoms] A 0.0
/53.2 1
/1 G0YYQ5_CHICK LGP2

6gkh[1] F MG
MAGNESIUM ION[1 atoms] A 100.0
/44.3 1
/1 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..

6gpg[4] E MG
MAGNESIUM ION[1 atoms] C 50.0
/35.1 2
/2 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58

6p4f[1] I MG
MAGNESIUM ION[1 atoms] A 0.0
/37.7 1
/1 Q970I2_SULTO DNA-dependent ATPase XPBII

6p4f[2] N MG
MAGNESIUM ION[1 atoms] A 40.0
/37.7 5
/5 Q970I2_SULTO DNA-dependent ATPase XPBII

6p4f[1] HA MG
MAGNESIUM ION[1 atoms] C 25.0
/37.7 4
/4 Q970I2_SULTO DNA-dependent ATPase XPBII

6p4w[2] F MG
MAGNESIUM ION[1 atoms] A 100.0
/37.7 3
/3 Q970I2_SULTO DNA-dependent ATPase XPBII

7bkp[1] F MG
MAGNESIUM ION[1 atoms] A 100.0
/43.2 1
/1 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..

7jl0[1] H MG
MAGNESIUM ION[1 atoms] C 100.0
/44.9 1
/1 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..

7mk1[2] F MG
MAGNESIUM ION[1 atoms] A 0.0
/31.2 1
/1 DDX58_HUMAN Antiviral innate immune response receptor RIG-I

7to2[3] D MG
MAGNESIUM ION[1 atoms] A 100.0
/35.1 2
/2 DDX58_HUMAN Antiviral innate immune response receptor RIG-I

3.a³:asym_id for the contact molecule. 4.a⁴:asym_id for the template homologue. 5.identity[%]⁵:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon⁶:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.

HOMO

678 pdb_id contact mol homologue

a³ description a⁴ identity[%]⁵ Ncon⁶ description

3eqt[2] B DHX58_HUMAN ATP-dependent RNA helicase DHX58[142 aa] A 100.0
/100.0 2
/2 DHX58_HUMAN ATP-dependent RNA helicase DHX58

5jc7[2] B D9N195_CHICK Melanoma differentiation associated protein-5[647 .. A 9.5
/45.3 21
/21 D9N195_CHICK Melanoma differentiation associated protein-5

7jl2[2] E IFIH1_HUMAN Interferon-induced helicase C domain-containing pr.. C 11.1
/44.9 9
/9 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..

7jl2[2] G IFIH1_HUMAN Interferon-induced helicase C domain-containing pr.. C 0.0
/44.9 8
/9 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..

7bkq[1] A IFIH1_MOUSE Isoform 2 of Interferon-induced helicase C domain-.. A 30.0
/44.0 10
/11 IFIH1_MOUSE Isoform 2 of Interferon-induced helicase C domain-..

7bkq[1] A IFIH1_MOUSE Isoform 2 of Interferon-induced helicase C domain-.. A 25.0
/44.0 12
/13 IFIH1_MOUSE Isoform 2 of Interferon-induced helicase C domain-..

4on9[2] B DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58[495 aa] A 35.1
/36.3 37
/40 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58

5f98[18] C DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58[648 aa] A 11.1
/35.1 18
/20 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58

5f98[6] E DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58[641 aa] A 3.8
/35.1 26
/26 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58

5f98[6] G DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58[647 aa] A 0.0
/35.1 1
/1 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58

5f98[6] K DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58[644 aa] A 0.0
/35.1 1
/3 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58

5f98[6] G DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58[647 aa] C 45.5
/35.2 11
/11 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58

5f98[5] K DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58[644 aa] C 0.0
/35.2 1
/3 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58

7jl3[2] C DDX58_HUMAN Antiviral innate immune response receptor RIG-I[65.. A 0.0
/35.6 7
/7 DDX58_HUMAN Antiviral innate immune response receptor RIG-I

7jl3[2] E DDX58_HUMAN Antiviral innate immune response receptor RIG-I[65.. A 16.7
/35.6 6
/6 DDX58_HUMAN Antiviral innate immune response receptor RIG-I

4w7s[1] B PRP28_YEAST Pre-mRNA-splicing ATP-dependent RNA helicase PRP28.. A 0.0
/31.6 1
/20 PRP28_YEAST Pre-mRNA-splicing ATP-dependent RNA helicase PRP28..

7w0a[2] H A1ZAW0_DROME Dicer-2, isoform A[1478 aa] A 31.8
/31.0 22
/55 A1ZAW0_DROME Dicer-2, isoform A

8hf0[1] D A1ZAW0_DROME Dicer-2, isoform A[1561 aa] A 0.0
/31.0 1
/11 A1ZAW0_DROME Dicer-2, isoform A

8hf0[1] A A1ZAW0_DROME Dicer-2, isoform A[1561 aa] D 33.3
/31.0 3
/13 A1ZAW0_DROME Dicer-2, isoform A

8hf1[2] D A1ZAW0_DROME Dicer-2, isoform A[1561 aa] A 37.5
/31.0 8
/28 A1ZAW0_DROME Dicer-2, isoform A

8hf1[2] A A1ZAW0_DROME Dicer-2, isoform A[1561 aa] D 33.3
/31.0 3
/31 A1ZAW0_DROME Dicer-2, isoform A

3.a³:asym_id for the contact molecule. 4.a⁴:asym_id for the template homologue. 5.identity[%]⁵:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon⁶:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.

PRECIPITANT

678 pdb_id contact mol homologue

a³ description a⁴ identity[%]⁵ Ncon⁶ description

3tbk[1] C EDO
1,2-ETHANEDIOL[4 atoms] A 28.6
/34.9 7
/7 DDX58_MOUSE RIG-I Helicase Domain

5jaj[1] H EDO
1,2-ETHANEDIOL[4 atoms] A 80.0
/53.9 5
/5 G0YYQ5_CHICK LGP2

5jaj[1] I EDO
1,2-ETHANEDIOL[4 atoms] A 40.0
/53.9 5
/5 G0YYQ5_CHICK LGP2

5jaj[1] J EDO
1,2-ETHANEDIOL[4 atoms] A 66.7
/53.9 6
/6 G0YYQ5_CHICK LGP2

5jaj[1] K MGF
TRIFLUOROMAGNESATE[4 atoms] A 0.0
/53.9 1
/1 G0YYQ5_CHICK LGP2

5jaj[1] F ALF
TETRAFLUOROALUMINATE ION[5 atoms] A 100.0
/53.9 8
/8 G0YYQ5_CHICK LGP2

5jb2[2] F ALF
TETRAFLUOROALUMINATE ION[5 atoms] A 100.0
/53.2 8
/8 G0YYQ5_CHICK LGP2

6gkh[3] E ALF
TETRAFLUOROALUMINATE ION[5 atoms] A 100.0
/44.3 6
/6 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..

7jl0[4] G ALF
TETRAFLUOROALUMINATE ION[5 atoms] C 100.0
/44.9 6
/6 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..

7jl1[4] F ALF
TETRAFLUOROALUMINATE ION[5 atoms] A 100.0
/35.6 5
/5 DDX58_HUMAN Antiviral innate immune response receptor RIG-I

2w4r[4] F SO4
SULFATE ION[5 atoms] A 100.0
/100.0 3
/3 DHX58_HUMAN PROBABLE ATP-DEPENDENT RNA HELICASE DHX58

2w4r[1] K SO4
SULFATE ION[5 atoms] C 100.0
/100.0 4
/4 DHX58_HUMAN PROBABLE ATP-DEPENDENT RNA HELICASE DHX58

2ykg[3] E SO4
SULFATE ION[5 atoms] A 85.7
/34.5 7
/7 DDX58_HUMAN PROBABLE ATP-DEPENDENT RNA HELICASE DDX58

3ts9[1] B SO4
SULFATE ION[5 atoms] A 100.0
/41.8 1
/1 IFIH1_MOUSE IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..

3ts9[4] D SO4
SULFATE ION[5 atoms] A 50.0
/41.8 4
/4 IFIH1_MOUSE IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..

4kbg[1] E SO4
SULFATE ION[5 atoms] B 0.0
/37.1 1
/8 Q72GF3_THET2 Heat resistant RNA dependent ATPase

4kbg[1] H SO4
SULFATE ION[5 atoms] B 20.0
/37.1 5
/5 Q72GF3_THET2 Heat resistant RNA dependent ATPase

4on9[2] D SO4
SULFATE ION[5 atoms] A 50.0
/36.3 4
/4 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58

4on9[2] E SO4
SULFATE ION[5 atoms] A 0.0
/36.3 1
/1 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58

5jbg[1] G SO4
SULFATE ION[5 atoms] A 33.3
/53.4 3
/3 G0YYQ5_CHICK LGP2

5jbg[1] H SO4
SULFATE ION[5 atoms] A 66.7
/53.4 3
/3 G0YYQ5_CHICK LGP2

5jbg[1] I SO4
SULFATE ION[5 atoms] A 0.0
/53.4 1
/1 G0YYQ5_CHICK LGP2

5jbg[1] J SO4
SULFATE ION[5 atoms] A 0.0
/53.4 4
/4 G0YYQ5_CHICK LGP2

5tnu[4] C SO4
SULFATE ION[5 atoms] A 100.0
/38.0 6
/6 Q970I2_SULTO DNA-dependent ATPase XPBII

5tnu[1] E SO4
SULFATE ION[5 atoms] A 100.0
/38.0 1
/1 Q970I2_SULTO DNA-dependent ATPase XPBII

5tnu[2] F SO4
SULFATE ION[5 atoms] A 100.0
/38.0 1
/3 Q970I2_SULTO DNA-dependent ATPase XPBII

5tnu[2] G SO4
SULFATE ION[5 atoms] A 25.0
/38.0 4
/4 Q970I2_SULTO DNA-dependent ATPase XPBII

5tnu[1] H SO4
SULFATE ION[5 atoms] A 0.0
/38.0 2
/6 Q970I2_SULTO DNA-dependent ATPase XPBII

5tnu[1] Y SO4
SULFATE ION[5 atoms] B 100.0
/38.1 1
/3 Q970I2_SULTO DNA-dependent ATPase XPBII

1wp9[6] G PO4
PHOSPHATE ION[5 atoms] A 85.7
/31.2 7
/7 Q8TZH8_PYRFU ATP-dependent RNA helicase, putative

4d26[1] D PO4
PHOSPHATE ION[5 atoms] A 100.0
/35.6 1
/9 O01378_BOMMO BMVLG PROTEIN

6p4w[2] E PO4
PHOSPHATE ION[5 atoms] A 80.0
/37.7 5
/5 Q970I2_SULTO DNA-dependent ATPase XPBII

4a2v[3] C GOL
GLYCEROL[6 atoms] A 33.3
/32.4 6
/8 D3TI84_ANAPL RETINOIC ACID INDUCIBLE PROTEIN I

4a2v[1] D GOL
GLYCEROL[6 atoms] A 66.7
/32.4 3
/3 D3TI84_ANAPL RETINOIC ACID INDUCIBLE PROTEIN I

4d25[1] E GOL
GLYCEROL[6 atoms] A 0.0
/35.6 2
/3 O01378_BOMMO BMVLG PROTEIN

5e3h[1] H GOL
GLYCEROL[6 atoms] A 100.0
/35.6 5
/5 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58

5tnu[1] S GOL
GLYCEROL[6 atoms] A 25.0
/38.0 4
/4 Q970I2_SULTO DNA-dependent ATPase XPBII

5tnu[1] T GOL
GLYCEROL[6 atoms] A 0.0
/38.0 1
/3 Q970I2_SULTO DNA-dependent ATPase XPBII

5tnu[1] BA GOL
GLYCEROL[6 atoms] B 33.3
/38.1 3
/4 Q970I2_SULTO DNA-dependent ATPase XPBII

6p4o[2] G GOL
GLYCEROL[6 atoms] A 100.0
/37.7 1
/1 Q970I2_SULTO DNA-dependent ATPase XPBII

6p4o[1] L GOL
GLYCEROL[6 atoms] E 100.0
/38.0 1
/1 Q970I2_SULTO DNA-dependent ATPase XPBII

4a36[2] I AF3
ALUMINUM FLUORIDE[4 atoms] A 100.0
/36.2 9
/9 D3TI84_ANAPL RETINOIC ACID INDUCIBLE PROTEIN I

5e3h[1] J BEF
BERYLLIUM TRIFLUORIDE ION[4 atoms] A 100.0
/35.6 5
/5 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58

5f9f[1] O ETF
TRIFLUOROETHANOL[6 atoms] A 66.7
/35.1 9
/9 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58

5f9f[1] Y ETF
TRIFLUOROETHANOL[6 atoms] E 40.0
/35.0 5
/5 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58

5f9f[2] CA ETF
TRIFLUOROETHANOL[6 atoms] G 0.0
/35.2 5
/5 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58

5f9f[1] NA ETF
TRIFLUOROETHANOL[6 atoms] K 66.7
/35.1 6
/6 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58

5f9f[1] P BU3
(R,R)-2,3-BUTANEDIOL[6 atoms] A 71.4
/35.1 7
/7 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58

5f9f[1] Q BU3
(R,R)-2,3-BUTANEDIOL[6 atoms] A 80.0
/35.1 5
/5 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58

5f9f[2] U BU3
(R,R)-2,3-BUTANEDIOL[6 atoms] A 0.0
/35.1 5
/5 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58

5f9f[1] T BU3
(R,R)-2,3-BUTANEDIOL[6 atoms] C 25.0
/35.1 4
/4 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58

5f9f[1] V BU3
(R,R)-2,3-BUTANEDIOL[6 atoms] C 25.0
/35.1 4
/4 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58

5f9f[5] W BU3
(R,R)-2,3-BUTANEDIOL[6 atoms] C 62.5
/35.1 8
/8 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58

5f9f[2] AA BU3
(R,R)-2,3-BUTANEDIOL[6 atoms] E 44.4
/35.0 9
/9 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58

5f9f[1] EA BU3
(R,R)-2,3-BUTANEDIOL[6 atoms] G 0.0
/35.2 5
/5 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58

3.a³:asym_id for the contact molecule. 4.a⁴:asym_id for the template homologue. 5.identity[%]⁵:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon⁶:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.

MONOMER
678
	pdb_id	a¹	identity[%]²	description
	5jb2	A	53.2	G0YYQ5_CHICK LGP2
	1.a¹:asym_id for the homologue. 2.identity[%]²:sequence identity between the query and the homologue.

Contact Molecules for Homologous Proteins

Summary Bars[0.0 %]

UniProt Feature Tables [Q96C10(DHX58_HUMAN)]