Contact Molecules for Homologous Proteins

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PID QueryLength Homolgous Sequence in PDB UniProt Query TITLE
727842 678 222 Q96C10(DHX58_HUMAN) RecName: Full=ATP-dependent RNA helicase DHX58 ; EC=3.6.4.13 ;AltName: Full=ATP-dependent helicase LGP2 ;AltName: Full=Protein D11Lgp2 homolog;AltName: Full=RIG-I-like receptor 3; Short=RLR-3;AltName: Full=RIG-I-like receptor LGP2; Short=RLR;
QUERYSEQ 
MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYL
ELKLQRAQPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV
DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHC
NVVVRYGLLTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQLLCINCMVAVGHGSDLRKVEGTHHVNVNPNFSNYYNVSRDPVVINKV
FKDWKPGGVISCRNCGEVWGLQMIYKSVKLPVLKVRSMLLETPQGRIQAKKWSRVPFSVPDFDFLQHCAENLSDLSLD
[BLAST file for PDB] (plain) (bar) (multiple alignment) [BLAST for UniProt: (plain) (bar) (multiple alignment) (PSSM file) ]

UniProt Feature Tables [Q96C10(DHX58_HUMAN)]

678
region name description
1-678 CHAIN /note="ATP-dependent RNA helicase DHX58" /id="PRO_0000102010"
11-188 DOMAIN /note="Helicase ATP-binding"
350-514 DOMAIN /note="Helicase C-terminal"
539-669 DOMAIN /note="RLR CTR"
572-655 REGION /note="RNA-binding"
489-546 COILED
24-31 BINDING /ligand="ATP" /ligand_id="ChEBI:CHEBI:30616"
556-556 BINDING /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105"
559-559 BINDING /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105"
612-612 BINDING /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105"
615-615 BINDING /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105"
510-678 DISORDER predicted by DISOPRED

MONOMER
678
pdb_id a1 identity[%]2 description
5jb2 A 53.2 G0YYQ5_CHICK LGP2 
1.a1:asym_id for the homologue. 2.identity[%]2:sequence identity between the query and the homologue.
HETERO
678 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
4i1s[1] B V_SV5 Non-structural protein V[52 aa] A 68.0
/45.0		 25
/26		 A7LCX1_PIG A7LCX1_PIG Melanoma differentiation associated protein-5
7jl0[4] D TRI65_HUMAN Tripartite motif-containing protein 65[180 aa] C 10.0
/44.9		 10
/11		 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..
6p4o[3] B Q970I1_SULTO Endonuclease Bax1[479 aa] A 32.0
/37.7		 25
/27		 Q970I2_SULTO DNA-dependent ATPase XPBII
6p4f[4] B Q970I1_SULTO Endonuclease Bax1[373 aa] A 26.1
/37.7		 23
/23		 Q970I2_SULTO DNA-dependent ATPase XPBII
7jl1[4] D RN135_HUMAN E3 ubiquitin-protein ligase RNF135[171 aa] A 20.0
/35.6		 10
/10		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
7jl3[2] D RN135_HUMAN E3 ubiquitin-protein ligase RNF135[169 aa] A 0.0
/35.6		 1
/1		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
8g7t[6] B RN135_HUMAN E3 ubiquitin-protein ligase RNF135[178 aa] A 16.7
/34.7		 12
/13		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
8g7v[1] B RN135_HUMAN E3 ubiquitin-protein ligase RNF135[178 aa] C 0.0
/34.3		 1
/1		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
2yjt[1] A D8AM26_ECOLX REGULATOR OF RIBONUCLEASE ACTIVITY A[158 aa] D 28.6
/31.0		 14
/17		 SRMB_ECOLI ATP-DEPENDENT RNA HELICASE SRMB
7w0a[8] B M9MRT5_DROME Loquacious, isoform D[16 aa] A 33.3
/31.0		 6
/27		 A1ZAW0_DROME Dicer-2, isoform A
7w0d[1] C M9MRT5_DROME Loquacious, isoform D[13 aa] E 14.3
/31.0		 7
/25		 A1ZAW0_DROME Dicer-2, isoform A
8hf0[4] C Q9VLW8_DROME LD06392p[126 aa] A 0.0
/31.0		 1
/31		 A1ZAW0_DROME Dicer-2, isoform A
8hf0[3] C Q9VLW8_DROME LD06392p[126 aa] D 100.0
/31.0		 1
/11		 A1ZAW0_DROME Dicer-2, isoform A
8hf1[1] B M9MRT5_DROME Loquacious, isoform D[16 aa] A 22.2
/31.0		 9
/23		 A1ZAW0_DROME Dicer-2, isoform A
6yvh[1] E CWC22_HUMAN Pre-mRNA-splicing factor CWC22 homolog[272 aa] H 25.0
/29.0		 4
/21		 IF4A3_HUMAN Eukaryotic initiation factor 4A-III
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
NUCLEOTIDE
678 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
3eqt[2] C 5'-R(*GP*CP*GP*CP*GP*CP*GP*C)-3' A 100.0
/100.0		 15
/15		 DHX58_HUMAN ATP-dependent RNA helicase DHX58
3eqt[2] D 5'-R(*GP*CP*GP*CP*GP*CP*GP*C)-3' A 100.0
/100.0		 6
/6		 DHX58_HUMAN ATP-dependent RNA helicase DHX58
5jaj[1] B RNA (5'-R(P*GP*GP*UP*AP*CP*GP*UP*AP*CP*CP*C)-3') A 42.3
/53.9		 26
/26		 G0YYQ5_CHICK LGP2
5jbg[1] B RNA (5'-R(*GPPP*GP*AP*GP*CP*GP*UP*GP*CP*CP*GP*GP*G.. A 47.8
/53.4		 67
/67		 G0YYQ5_CHICK LGP2
5jbj[1] B RNA (5'-R(P*GP*GP*UP*AP*GP*CP*GP*CP*UP*AP*CP*C)-3'.. A 38.5
/53.2		 26
/26		 G0YYQ5_CHICK LGP2
5jbj[1] C RNA (5'-R(P*GP*GP*UP*AP*GP*CP*GP*CP*UP*AP*CP*C)-3'.. A 67.6
/53.2		 34
/34		 G0YYQ5_CHICK LGP2
5jb2[1] B RNA (5'-R(*GPPP*GP*UP*AP*CP*GP*UP*AP*CP*CP*C)-3') .. A 42.3
/53.2		 26
/26		 G0YYQ5_CHICK LGP2
5jb2[1] C RNA (5'-R(*GPPP*GP*UP*AP*CP*GP*UP*AP*CP*C)-3') A 63.9
/53.2		 36
/36		 G0YYQ5_CHICK LGP2
4gl2[2] C RNA (5'-R(*AP*UP*CP*CP*GP*CP*GP*GP*CP*CP*CP*U)-3').. A 57.1
/47.2		 14
/14		 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..
4gl2[2] F RNA (5'-R(P*AP*GP*GP*GP*CP*CP*GP*CP*GP*GP*AP*U)-3'.. A 69.0
/47.2		 29
/29		 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..
5jc7[1] C RNA (5'-R(P*GP*GP*AP*CP*GP*UP*CP*AP*UP*GP*CP*GP*CP.. A 50.0
/45.3		 20
/20		 D9N195_CHICK Melanoma differentiation associated protein-5
5jc7[1] C RNA (5'-R(P*GP*GP*AP*CP*GP*UP*CP*AP*UP*GP*CP*GP*CP.. B 63.3
/45.4		 30
/30		 D9N195_CHICK Melanoma differentiation associated protein-5
5jc7[1] D RNA (5'-R(P*GP*GP*GP*AP*CP*GP*UP*CP*AP*UP*GP*CP*GP.. A 64.5
/45.3		 31
/31		 D9N195_CHICK Melanoma differentiation associated protein-5
5jc7[1] D RNA (5'-R(P*GP*GP*GP*AP*CP*GP*UP*CP*AP*UP*GP*CP*GP.. B 47.4
/45.4		 19
/19		 D9N195_CHICK Melanoma differentiation associated protein-5
7jl2[3] A RNA (44-MER) C 57.1
/44.9		 14
/14		 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..
7jl2[3] B RNA (44-MER) C 57.1
/44.9		 21
/21		 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..
5jaj[1] C RNA (5'-R(P*GP*GP*UP*AP*CP*GP*UP*AP*CP*C)-3') A 62.2
/53.9		 37
/37		 G0YYQ5_CHICK LGP2
5jc3[6] B RNA (5'-R(P*GP*GP*UP*AP*CP*GP*UP*AP*CP*C)-3') A 50.0
/43.9		 20
/20		 D9N195_CHICK Melanoma differentiation associated protein-5
5jc3[5] C RNA (5'-R(P*GP*GP*UP*AP*CP*GP*UP*AP*CP*C)-3') A 66.7
/43.9		 30
/30		 D9N195_CHICK Melanoma differentiation associated protein-5
5jcf[1] C RNA (5'-R(P*AP*GP*GP*UP*AP*CP*GP*UP*AP*CP*C)-3') A 69.0
/44.5		 29
/29		 D9N195_CHICK Melanoma differentiation associated protein-5
7niq[1] B RNA (5'-R(P*CP*AP*AP*GP*CP*CP*GP*AP*GP*GP*AP*GP*AP.. A 61.1
/44.2		 18
/18		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
7niq[1] C RNA (5'-R(P*AP*UP*CP*UP*CP*CP*UP*CP*GP*GP*CP*UP*UP.. A 68.2
/44.2		 22
/22		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
6g1s[1] B RNA (5'-R(P*UP*CP*CP*AP*UP*GP*CP*GP*CP*AP*UP*GP*AP.. A 40.0
/44.7		 15
/15		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
6g1x[1] B RNA (5'-R(P*UP*CP*CP*AP*UP*GP*CP*GP*CP*AP*UP*GP*AP.. A 36.4
/45.4		 11
/11		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
6h61[3] B RNA (5'-R(P*UP*CP*CP*AP*UP*GP*CP*GP*CP*AP*UP*GP*AP.. A 53.3
/44.7		 15
/15		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
7bkq[2] B RNA (5'-R(P*UP*CP*CP*AP*UP*GP*CP*GP*CP*AP*UP*GP*AP.. A 58.3
/44.0		 12
/12		 IFIH1_MOUSE Isoform 2 of Interferon-induced helicase C domain-..
7bkq[1] B RNA (5'-R(P*UP*CP*CP*AP*UP*GP*CP*GP*CP*AP*UP*GP*AP.. A 0.0
/44.0		 2
/2		 IFIH1_MOUSE Isoform 2 of Interferon-induced helicase C domain-..
7bkq[1] B RNA (5'-R(P*UP*CP*CP*AP*UP*GP*CP*GP*CP*AP*UP*GP*AP.. A 0.0
/44.0		 2
/2		 IFIH1_MOUSE Isoform 2 of Interferon-induced helicase C domain-..
6g1s[1] C RNA (5'-R(P*CP*GP*UP*CP*AP*UP*GP*CP*GP*CP*AP*UP*GP.. A 73.1
/44.7		 26
/26		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
6g1x[3] C RNA (5'-R(P*CP*GP*UP*CP*AP*UP*GP*CP*GP*CP*AP*UP*GP.. A 72.0
/45.4		 25
/25		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
6h61[3] C RNA (5'-R(P*CP*GP*UP*CP*AP*UP*GP*CP*GP*CP*AP*UP*GP.. A 74.1
/44.7		 27
/27		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
7bkq[1] C RNA (5'-R(P*CP*GP*UP*CP*AP*UP*GP*CP*GP*CP*AP*UP*GP.. A 0.0
/44.0		 1
/1		 IFIH1_MOUSE Isoform 2 of Interferon-induced helicase C domain-..
6gkh[1] B RNA (5'-R(P*GP*UP*CP*AP*AP*GP*CP*CP*GP*AP*GP*GP*AP.. A 60.0
/44.3		 15
/15		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
7nic[1] B RNA (5'-R(P*GP*UP*CP*AP*AP*GP*CP*CP*GP*AP*GP*GP*AP.. A 42.1
/44.0		 19
/19		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
6gkh[2] C RNA (5'-R(P*UP*CP*UP*CP*CP*UP*CP*GP*GP*CP*UP*UP*GP.. A 57.7
/44.3		 26
/26		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
6g19[1] B RNA (5'-R(P*CP*AP*AP*GP*CP*CP*GP*AP*GP*GP*AP*GP*AP.. A 47.6
/43.9		 21
/21		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
6gjz[2] B RNA (5'-R(P*CP*AP*AP*GP*CP*CP*GP*AP*GP*GP*AP*GP*AP.. A 47.6
/43.9		 21
/21		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
7bkp[1] C RNA (5'-R(P*CP*AP*AP*GP*CP*CP*GP*AP*GP*GP*AP*GP*AP.. A 50.0
/43.2		 20
/20		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
6g19[1] C RNA (5'-R(P*CP*UP*CP*UP*CP*CP*UP*CP*GP*GP*CP*UP*UP.. A 65.5
/43.9		 29
/29		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
6gjz[3] C RNA (5'-R(P*CP*UP*CP*UP*CP*CP*UP*CP*GP*GP*CP*UP*UP.. A 66.7
/43.9		 30
/30		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
7eld[1] B pri-miRNA 166f A 31.2
/38.0		 32
/74		 DCL1_ARATH Endoribonuclease Dicer homolog 1
7ele[1] B pre-miRNA 166f A 32.1
/38.0		 28
/63		 DCL1_ARATH Endoribonuclease Dicer homolog 1
5zal[1] C RNA (73-mer) A 20.0
/37.9		 5
/31		 DICER_HUMAN Endoribonuclease Dicer
5zam[1] C RNA (73-mer) A 50.0
/37.9		 2
/27		 DICER_HUMAN Endoribonuclease Dicer
6p4f[2] E DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*AP*AP*CP*AP*TP*CP*.. A 23.1
/37.7		 13
/18		 Q970I2_SULTO DNA-dependent ATPase XPBII
6p4f[1] F DNA (5'-D(P*TP*GP*TP*AP*GP*GP*TP*TP*TP*CP*CP*AP*TP.. A 15.8
/37.7		 19
/21		 Q970I2_SULTO DNA-dependent ATPase XPBII
6p4f[1] H DNA (5'-D(P*TP*GP*TP*AP*GP*GP*TP*TP*TP*CP*CP*AP*TP.. C 22.2
/37.7		 18
/19		 Q970I2_SULTO DNA-dependent ATPase XPBII
4a36[1] E 5'-R(*GP*CP*AP*UP*GP*CP*GP*AP*CP*CP*UP*CP*UP*GP *U.. B 14.3
/36.2		 7
/7		 D3TI84_ANAPL RETINOIC ACID INDUCIBLE PROTEIN I
4a36[1] F 5'-R(*UP*CP*AP*AP*AP*CP*AP*GP*AP*GP*GP*UP*CP*GP *C.. B 54.2
/36.2		 24
/25		 D3TI84_ANAPL RETINOIC ACID INDUCIBLE PROTEIN I
4a36[1] C 5'-R(*GP*CP*AP*UP*GP*CP*GP*AP*CP*CP*UP*CP*UP*GP *U.. A 14.3
/36.2		 7
/7		 D3TI84_ANAPL RETINOIC ACID INDUCIBLE PROTEIN I
4a36[1] D 5'-R(*UP*CP*AP*AP*AP*CP*AP*GP*AP*GP*GP*UP*CP*GP *C.. A 52.2
/36.2		 23
/24		 D3TI84_ANAPL RETINOIC ACID INDUCIBLE PROTEIN I
5e3h[1] B RNA (5'-R(*CP*GP*AP*CP*GP*CP*UP*AP*GP*CP*GP*U)-3').. A 55.6
/35.6		 18
/18		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5e3h[1] C RNA (5'-R(*CP*GP*AP*CP*GP*CP*UP*AP*GP*CP*GP*U)-3').. A 59.3
/35.6		 27
/27		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
4d25[2] B 5'-R(*UP*GP*AP*CP*AP*UP)-3' A 33.3
/35.6		 9
/24		 O01378_BOMMO BMVLG PROTEIN
7jl3[3] G dsRNA strand1 A 50.0
/35.6		 14
/14		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
7jl3[3] H dsRNA strand 2 A 62.5
/35.6		 24
/24		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
7jl0[1] A RNA (5'-R(P*GP*AP*CP*UP*GP*AP*CP*UP*GP*AP*CP*UP*GP.. C 63.6
/44.9		 11
/11		 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..
7jl1[1] B dsRNA strand 1 A 47.1
/35.6		 17
/17		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
7jl0[1] B RNA (5'-R(P*UP*CP*AP*GP*UP*CP*AP*GP*UP*CP*AP*GP*UP.. C 61.9
/44.9		 21
/21		 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..
7jl1[1] C dsRNA strand 2 A 59.3
/35.6		 27
/27		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
6bu9[1] B RNA (5'-R(*GP*GP*AP*GP*GP*UP*AP*GP*UP*AP*GP*GP*UP*.. A 100.0
/35.4		 1
/1		 A1ZAW0_DROME Dicer-2, isoform A
5f9h[6] B RNA (5'-R(P*AP*AP*UP*AP*UP*AP*AP*UP*AP*GP*UP*GP*AP.. A 55.6
/35.3		 36
/37		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
6kyv[6] A RNA (5'-R(*GP*GP*UP*AP*GP*AP*CP*GP*CP*UP*UP*CP*GP*.. B 55.6
/35.3		 45
/46		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
7to2[1] B p3SLR30 A 45.6
/35.1		 57
/57		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
6gpg[1] A RNA (5'-R(*CP*GP*AP*CP*GP*CP*UP*AP*GP*CP*GP*UP*CP*.. C 52.6
/35.1		 19
/19		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
6gpg[1] B RNA (5'-R(*CP*GP*AP*CP*GP*CP*UP*AP*GP*CP*GP*UP*CP*.. C 58.6
/35.1		 29
/29		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f98[12] B RNA (5'-R(P*GP*AP*AP*UP*AP*UP*AP*AP*UP*AP*GP*UP*GP.. A 59.0
/35.1		 39
/40		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
7tny[2] B p2dsRNA A 38.5
/34.8		 26
/26		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
7tny[2] C p2dsRNA A 58.6
/34.8		 29
/29		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
8dvu[1] B OHSLR30 A 47.3
/35.0		 55
/55		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
7to0[1] B OHdsRNA A 42.3
/35.0		 26
/27		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
7to0[1] C OHdsRNA A 60.7
/35.0		 28
/28		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
8dvs[1] B OHSLR30 A 47.9
/35.0		 48
/48		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
7tnx[1] B p3dsRNAa A 43.5
/34.7		 23
/24		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
7tnx[1] C p3dsRNAb A 61.9
/34.7		 21
/21		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
4ay2[1] B 5'-R-PPP(GP*GP*CP*GP*CP*GP*GP*CP*UP*UP*CP*GP*GP*CP.. A 38.7
/34.6		 31
/31		 DDX58_HUMAN PROBABLE ATP-DEPENDENT RNA HELICASE DDX58
2ykg[4] B 5'-R(*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP)-3' A 43.8
/34.5		 16
/16		 DDX58_HUMAN PROBABLE ATP-DEPENDENT RNA HELICASE DDX58
2ykg[4] C 5'-R(*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP)-3' A 37.5
/34.5		 16
/16		 DDX58_HUMAN PROBABLE ATP-DEPENDENT RNA HELICASE DDX58
7to1[1] B p3SLR30 A 52.5
/34.3		 40
/41		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
8dvr[1] B p3SLR30 A 54.5
/34.3		 33
/33		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
8scz[1] B p3SLR30 A 47.6
/34.3		 42
/42		 RIGI_HUMAN Antiviral innate immune response receptor RIG-I
8g7v[2] E p3dsRNA24a A 47.6
/34.7		 21
/21		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
8g7v[2] F p3dsRNA24b A 57.9
/34.7		 19
/19		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
8g7t[2] E p3dsRNA24a A 38.1
/34.7		 21
/22		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
8g7t[2] E p3dsRNA24a C 57.1
/33.9		 21
/21		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
8g7t[2] F p3dsRNA24b A 54.2
/34.7		 24
/24		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
8g7t[2] F p3dsRNA24b C 43.8
/33.9		 16
/16		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
8sd0[1] B p3SLR14 A 51.3
/34.1		 39
/39		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
4a2x[2] E 5'-R(*GP*GP*GP*AP*GP*AP*AP*CP*AP*AP*CP*GP*CP*GP)-3.. A 44.4
/32.4		 9
/9		 D3TI84_ANAPL RETINOIC ACID INDUCIBLE PROTEIN I
4a2x[2] E 5'-R(*GP*GP*GP*AP*GP*AP*AP*CP*AP*AP*CP*GP*CP*GP)-3.. B 0.0
/32.4		 1
/1		 D3TI84_ANAPL RETINOIC ACID INDUCIBLE PROTEIN I
4a2x[2] F 5'-R(*CP*GP*CP*GP*UP*UP*GP*UP*UP*CP*UP*CP*CP*CP)-3.. A 0.0
/32.4		 2
/2		 D3TI84_ANAPL RETINOIC ACID INDUCIBLE PROTEIN I
4a2x[2] F 5'-R(*CP*GP*CP*GP*UP*UP*GP*UP*UP*CP*UP*CP*CP*CP)-3.. B 44.4
/32.4		 9
/9		 D3TI84_ANAPL RETINOIC ACID INDUCIBLE PROTEIN I
8t5s[1] B RNA (30-MER) A 28.6
/31.8		 21
/25		 G5EDI8_CAEEL Dicer-related helicase
8t5s[1] C RNA (30-MER) A 42.9
/31.8		 28
/34		 G5EDI8_CAEEL Dicer-related helicase
3lrn[2] C RNA (5'-R(*(GTP)P*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP*GP.. A 46.7
/31.2		 15
/15		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
3lrn[2] D RNA (5'-R(*(GTP)P*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP*GP.. A 33.3
/31.2		 3
/3		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
3lrr[2] C RNA (5'-R(*(ATP)P*UP*AP*UP*AP*UP*AP*UP*AP*UP*AP*U).. A 46.7
/31.2		 15
/15		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
3lrr[2] D RNA (5'-R(*(ATP)P*UP*AP*UP*AP*UP*AP*UP*AP*UP*AP*U).. A 50.0
/31.2		 4
/4		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
3ncu[2] C 5'-R(*(GDP)P*AP*CP*GP*CP*UP*AP*GP*CP*GP*UP*C)-3' A 61.5
/31.2		 13
/13		 DDX58_HUMAN RIG-I
3ncu[2] D 5'-R(*(GDP)P*AP*CP*GP*CP*UP*AP*GP*CP*GP*UP*C)-3' A 50.0
/31.2		 4
/4		 DDX58_HUMAN RIG-I
7bai[4] C RNA (5'-R(*(GDP)P*AP*CP*GP*CP*UP*AP*GP*CP*GP*UP*C).. A 72.7
/31.2		 11
/11		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
7bai[4] D RNA (5'-R(*(GDP)P*AP*CP*GP*CP*UP*AP*GP*CP*GP*UP*C).. A 66.7
/31.2		 3
/3		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
7bah[2] C RNA (5'-R(*GP*AP*CP*GP*CP*UP*AP*GP*CP*GP*UP*C)-3').. A 63.6
/31.2		 11
/11		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
7bah[2] D RNA (5'-R(*GP*AP*CP*GP*CP*UP*AP*GP*CP*GP*UP*C)-3').. A 66.7
/31.2		 3
/3		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
7mk1[2] C DNA (41-MER) A 35.3
/31.2		 17
/17		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
7v6c[1] C RNA (5'-R(P*UP*GP*AP*GP*G)-3') A 0.0
/31.2		 3
/5		 A1ZAW0_DROME Dicer-2, isoform A
7v6c[1] D RNA (5'-R(P*CP*CP*UP*CP*UP*CP*U)-3') A 57.1
/31.2		 7
/8		 A1ZAW0_DROME Dicer-2, isoform A
3og8[2] C RNA (5'-R(*GP*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP*.. A 63.6
/31.0		 11
/11		 RIGI_HUMAN Antiviral innate immune response receptor RIG-I
3og8[2] D RNA (5'-R(*GP*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP*.. A 50.0
/31.0		 4
/4		 RIGI_HUMAN Antiviral innate immune response receptor RIG-I
7w0a[2] C RNA (30-MER) A 0.0
/31.0		 5
/17		 A1ZAW0_DROME Dicer-2, isoform A
7w0a[2] D RNA (32-MER) A 47.1
/31.0		 17
/29		 A1ZAW0_DROME Dicer-2, isoform A
7w0c[1] C RNA (35-MER) A 0.0
/31.0		 6
/20		 A1ZAW0_DROME Dicer-2, isoform A
7w0c[1] D RNA (35-MER) A 50.0
/31.0		 18
/29		 A1ZAW0_DROME Dicer-2, isoform A
7w0d[2] B dsRNA D 47.1
/31.0		 17
/37		 A1ZAW0_DROME Dicer-2, isoform A
7w0d[2] F dsRNA D 0.0
/31.0		 5
/22		 A1ZAW0_DROME Dicer-2, isoform A
7w0e[1] A dsRNA C 0.0
/31.0		 7
/38		 A1ZAW0_DROME Dicer-2, isoform A
7w0e[1] B dsRNA C 43.8
/31.0		 16
/61		 A1ZAW0_DROME Dicer-2, isoform A
7w0f[1] E siRNA A 0.0
/31.0		 8
/19		 A1ZAW0_DROME Dicer-2, isoform A
7w0f[1] F siRNA A 46.7
/31.0		 15
/32		 A1ZAW0_DROME Dicer-2, isoform A
8hf0[2] F RNA (52-MER) A 0.0
/31.0		 7
/15		 A1ZAW0_DROME Dicer-2, isoform A
8hf0[2] G RNA (52-MER) A 47.1
/31.0		 17
/24		 A1ZAW0_DROME Dicer-2, isoform A
8hf1[3] E RNA (5'-R(P*GP*AP*GP*AP*CP*UP*UP*GP*G)-3') A 0.0
/31.0		 6
/13		 A1ZAW0_DROME Dicer-2, isoform A
8hf1[3] H RNA (5'-R(P*CP*CP*AP*AP*GP*UP*CP*UP*CP*UP*U)-3') A 60.0
/31.0		 15
/23		 A1ZAW0_DROME Dicer-2, isoform A
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
COMPOUND
678 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
3tbk[4] B ANP
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER[31 ato.. 		A 77.8
/34.9		 9
/12		 DDX58_MOUSE RIG-I Helicase Domain
4d25[1] C ANP
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER[31 ato.. 		A 100.0
/35.6		 2
/22		 O01378_BOMMO BMVLG PROTEIN
6gjz[1] E ANP
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER[31 ato.. 		A 80.0
/43.9		 10
/10		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
6gkm[2] E ATP
ADENOSINE-5'-TRIPHOSPHATE[31 atoms] 		A 80.0
/43.3		 10
/10		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
5f98[6] O M7G
7N-METHYL-8-HYDROGUANOSINE-5'-DIPHOSPHATE[29 atoms.. 		A 28.6
/35.1		 7
/7		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f9h[6] Q GTP
GUANOSINE-5'-TRIPHOSPHATE[32 atoms] 		A 44.4
/35.3		 9
/10		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
8dvr[1] D GTP
GUANOSINE-5'-TRIPHOSPHATE[32 atoms] 		A 50.0
/34.3		 10
/10		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
3zd7[22] F ADP
ADENOSINE-5'-DIPHOSPHATE[27 atoms] 		A 77.8
/34.9		 9
/14		 DDX58_HUMAN PROBABLE ATP-DEPENDENT RNA HELICASE DDX58
4d26[1] C ADP
ADENOSINE-5'-DIPHOSPHATE[27 atoms] 		A 100.0
/35.6		 1
/19		 O01378_BOMMO BMVLG PROTEIN
6gkh[4] D ADP
ADENOSINE-5'-DIPHOSPHATE[27 atoms] 		A 84.6
/44.3		 13
/13		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
7jl0[4] F ADP
ADENOSINE-5'-DIPHOSPHATE[27 atoms] 		C 81.8
/44.9		 11
/11		 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..
7jl1[4] E ADP
ADENOSINE-5'-DIPHOSPHATE[27 atoms] 		A 87.5
/35.6		 8
/10		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
7to2[3] E ADP
ADENOSINE-5'-DIPHOSPHATE[27 atoms] 		A 80.0
/35.1		 10
/12		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
8t5s[1] F ADP
ADENOSINE-5'-DIPHOSPHATE[27 atoms] 		A 88.9
/31.8		 9
/11		 G5EDI8_CAEEL Dicer-related helicase
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
METAL
678 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
2qfd[10] K HG
MERCURY (II) ION[1 atoms] 		A 100.0
/31.2		 4
/4		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
2w4r[4] E HG
MERCURY (II) ION[1 atoms] 		A 100.0
/100.0		 4
/4		 DHX58_HUMAN PROBABLE ATP-DEPENDENT RNA HELICASE DHX58
3b6e[1] B NA
SODIUM ION[1 atoms] 		A 100.0
/54.2		 5
/5		 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..
3eaq[1] C CL
CHLORIDE ION[1 atoms] 		A 0.0
/37.1		 2
/3		 Q72GF3_THET2 Heat resistant RNA dependent ATPase
3eaq[1] D CL
CHLORIDE ION[1 atoms] 		B 0.0
/37.1		 3
/3		 Q72GF3_THET2 Heat resistant RNA dependent ATPase
4on9[1] G CL
CHLORIDE ION[1 atoms] 		B 50.0
/35.2		 2
/2		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5tnu[1] J CL
CHLORIDE ION[1 atoms] 		A 0.0
/38.0		 2
/2		 Q970I2_SULTO DNA-dependent ATPase XPBII
5tnu[1] K CL
CHLORIDE ION[1 atoms] 		A 0.0
/38.0		 3
/3		 Q970I2_SULTO DNA-dependent ATPase XPBII
5tnu[4] M CL
CHLORIDE ION[1 atoms] 		A 0.0
/38.0		 1
/2		 Q970I2_SULTO DNA-dependent ATPase XPBII
6p4f[1] Q CL
CHLORIDE ION[1 atoms] 		A 100.0
/37.7		 1
/1		 Q970I2_SULTO DNA-dependent ATPase XPBII
6p4o[1] I CL
CHLORIDE ION[1 atoms] 		A 100.0
/37.7		 1
/1		 Q970I2_SULTO DNA-dependent ATPase XPBII
6p4w[2] I CL
CHLORIDE ION[1 atoms] 		A 25.0
/37.7		 4
/4		 Q970I2_SULTO DNA-dependent ATPase XPBII
6p4w[2] J CL
CHLORIDE ION[1 atoms] 		A 0.0
/37.7		 1
/1		 Q970I2_SULTO DNA-dependent ATPase XPBII
6p4w[1] L CL
CHLORIDE ION[1 atoms] 		A 50.0
/37.7		 2
/2		 Q970I2_SULTO DNA-dependent ATPase XPBII
6p4w[1] BA CL
CHLORIDE ION[1 atoms] 		C 100.0
/37.7		 1
/1		 Q970I2_SULTO DNA-dependent ATPase XPBII
6p4w[1] Z CL
CHLORIDE ION[1 atoms] 		C 100.0
/37.7		 1
/2		 Q970I2_SULTO DNA-dependent ATPase XPBII
2qfb[10] K ZN
ZINC ION[1 atoms] 		A 100.0
/31.2		 4
/4		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
2rqa[12] B ZN
ZINC ION[1 atoms] 		A 100.0
/100.0		 6
/6		 DHX58_HUMAN ATP-dependent RNA helicase DHX58
2rqb[3] B ZN
ZINC ION[1 atoms] 		A 100.0
/34.8		 5
/5		 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..
2ykg[3] D ZN
ZINC ION[1 atoms] 		A 100.0
/34.5		 4
/4		 DDX58_HUMAN PROBABLE ATP-DEPENDENT RNA HELICASE DDX58
3lrn[4] E ZN
ZINC ION[1 atoms] 		A 100.0
/31.2		 4
/4		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
3ncu[2] E ZN
ZINC ION[1 atoms] 		A 100.0
/31.2		 4
/4		 DDX58_HUMAN RIG-I
3og8[9] E ZN
ZINC ION[1 atoms] 		A 100.0
/31.0		 4
/4		 RIGI_HUMAN Antiviral innate immune response receptor RIG-I
4ay2[7] C ZN
ZINC ION[1 atoms] 		A 100.0
/34.6		 4
/4		 DDX58_HUMAN PROBABLE ATP-DEPENDENT RNA HELICASE DDX58
4bpb[23] D ZN
ZINC ION[1 atoms] 		A 100.0
/34.3		 4
/4		 DDX58_HUMAN PROBABLE ATP-DEPENDENT RNA HELICASE DDX58
4gl2[10] H ZN
ZINC ION[1 atoms] 		A 100.0
/47.2		 5
/5		 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..
5jaj[1] D ZN
ZINC ION[1 atoms] 		A 100.0
/53.9		 4
/4		 G0YYQ5_CHICK LGP2
5jb2[3] D ZN
ZINC ION[1 atoms] 		A 100.0
/53.2		 4
/4		 G0YYQ5_CHICK LGP2
6gjz[5] D ZN
ZINC ION[1 atoms] 		A 100.0
/43.9		 4
/4		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
6gpg[1] D ZN
ZINC ION[1 atoms] 		C 100.0
/35.1		 5
/5		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
7bkp[4] D ZN
ZINC ION[1 atoms] 		A 100.0
/43.2		 5
/5		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
7bkq[2] D ZN
ZINC ION[1 atoms] 		A 80.0
/44.0		 5
/5		 IFIH1_MOUSE Isoform 2 of Interferon-induced helicase C domain-..
7jl0[4] E ZN
ZINC ION[1 atoms] 		C 100.0
/44.9		 4
/4		 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..
7jl1[4] H ZN
ZINC ION[1 atoms] 		A 75.0
/35.6		 4
/4		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
7tnx[16] D ZN
ZINC ION[1 atoms] 		A 100.0
/34.7		 4
/4		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
8scz[1] C ZN
ZINC ION[1 atoms] 		A 100.0
/34.3		 4
/4		 RIGI_HUMAN Antiviral innate immune response receptor RIG-I
8t5s[1] D ZN
ZINC ION[1 atoms] 		A 100.0
/31.8		 4
/4		 G5EDI8_CAEEL Dicer-related helicase
3zd7[1] E MG
MAGNESIUM ION[1 atoms] 		A 100.0
/34.9		 2
/2		 DDX58_HUMAN PROBABLE ATP-DEPENDENT RNA HELICASE DDX58
4a36[13] H MG
MAGNESIUM ION[1 atoms] 		A 80.0
/36.2		 5
/5		 D3TI84_ANAPL RETINOIC ACID INDUCIBLE PROTEIN I
4ay2[1] E MG
MAGNESIUM ION[1 atoms] 		A 100.0
/34.6		 3
/3		 DDX58_HUMAN PROBABLE ATP-DEPENDENT RNA HELICASE DDX58
5e3h[5] E MG
MAGNESIUM ION[1 atoms] 		A 0.0
/35.6		 2
/2		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5e3h[1] F MG
MAGNESIUM ION[1 atoms] 		A 100.0
/35.6		 1
/1		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5e3h[2] G MG
MAGNESIUM ION[1 atoms] 		A 50.0
/35.6		 2
/2		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f98[6] N MG
MAGNESIUM ION[1 atoms] 		A 50.0
/35.1		 2
/2		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f9f[4] N MG
MAGNESIUM ION[1 atoms] 		A 0.0
/35.1		 1
/1		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f9h[2] N MG
MAGNESIUM ION[1 atoms] 		A 0.0
/35.3		 2
/4		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f9h[1] O MG
MAGNESIUM ION[1 atoms] 		A 0.0
/35.3		 2
/2		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f9h[1] P MG
MAGNESIUM ION[1 atoms] 		A 100.0
/35.3		 1
/1		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f9h[1] U MG
MAGNESIUM ION[1 atoms] 		E 0.0
/35.6		 1
/1		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f9h[1] X MG
MAGNESIUM ION[1 atoms] 		G 50.0
/35.0		 2
/2		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5jaj[1] G MG
MAGNESIUM ION[1 atoms] 		A 100.0
/53.9		 2
/2		 G0YYQ5_CHICK LGP2
5jb2[2] G MG
MAGNESIUM ION[1 atoms] 		A 100.0
/53.2		 2
/2		 G0YYQ5_CHICK LGP2
5jb2[1] H MG
MAGNESIUM ION[1 atoms] 		A 0.0
/53.2		 1
/1		 G0YYQ5_CHICK LGP2
6gkh[1] F MG
MAGNESIUM ION[1 atoms] 		A 100.0
/44.3		 1
/1		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
6gpg[4] E MG
MAGNESIUM ION[1 atoms] 		C 50.0
/35.1		 2
/2		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
6p4f[1] I MG
MAGNESIUM ION[1 atoms] 		A 0.0
/37.7		 1
/1		 Q970I2_SULTO DNA-dependent ATPase XPBII
6p4f[2] N MG
MAGNESIUM ION[1 atoms] 		A 40.0
/37.7		 5
/5		 Q970I2_SULTO DNA-dependent ATPase XPBII
6p4f[1] HA MG
MAGNESIUM ION[1 atoms] 		C 25.0
/37.7		 4
/4		 Q970I2_SULTO DNA-dependent ATPase XPBII
6p4w[2] F MG
MAGNESIUM ION[1 atoms] 		A 100.0
/37.7		 3
/3		 Q970I2_SULTO DNA-dependent ATPase XPBII
7bkp[1] F MG
MAGNESIUM ION[1 atoms] 		A 100.0
/43.2		 1
/1		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
7jl0[1] H MG
MAGNESIUM ION[1 atoms] 		C 100.0
/44.9		 1
/1		 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..
7mk1[2] F MG
MAGNESIUM ION[1 atoms] 		A 0.0
/31.2		 1
/1		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
7to2[3] D MG
MAGNESIUM ION[1 atoms] 		A 100.0
/35.1		 2
/2		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
8t5s[1] E MG
MAGNESIUM ION[1 atoms] 		A 66.7
/31.8		 3
/3		 G5EDI8_CAEEL Dicer-related helicase
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
HOMO
678 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
3eqt[2] B DHX58_HUMAN ATP-dependent RNA helicase DHX58[142 aa] A 100.0
/100.0		 2
/2		 DHX58_HUMAN ATP-dependent RNA helicase DHX58
5jc7[2] B D9N195_CHICK Melanoma differentiation associated protein-5[647 .. A 9.5
/45.3		 21
/21		 D9N195_CHICK Melanoma differentiation associated protein-5
7jl2[2] E IFIH1_HUMAN Interferon-induced helicase C domain-containing pr.. C 11.1
/44.9		 9
/9		 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..
7jl2[2] G IFIH1_HUMAN Interferon-induced helicase C domain-containing pr.. C 0.0
/44.9		 8
/9		 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..
7bkq[1] A IFIH1_MOUSE Isoform 2 of Interferon-induced helicase C domain-.. A 30.0
/44.0		 10
/11		 IFIH1_MOUSE Isoform 2 of Interferon-induced helicase C domain-..
7bkq[1] A IFIH1_MOUSE Isoform 2 of Interferon-induced helicase C domain-.. A 25.0
/44.0		 12
/13		 IFIH1_MOUSE Isoform 2 of Interferon-induced helicase C domain-..
4on9[2] B DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58[495 aa] A 35.1
/36.3		 37
/40		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f98[18] C DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58[648 aa] A 11.1
/35.1		 18
/20		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f98[6] E DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58[641 aa] A 3.8
/35.1		 26
/26		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f98[6] G DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58[647 aa] A 0.0
/35.1		 1
/1		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f98[6] K DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58[644 aa] A 0.0
/35.1		 1
/3		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f98[6] G DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58[647 aa] C 45.5
/35.2		 11
/11		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f98[5] K DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58[644 aa] C 0.0
/35.2		 1
/3		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
7jl3[2] C DDX58_HUMAN Antiviral innate immune response receptor RIG-I[65.. A 0.0
/35.6		 7
/7		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
7jl3[2] E DDX58_HUMAN Antiviral innate immune response receptor RIG-I[65.. A 16.7
/35.6		 6
/6		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
8g7t[4] C DDX58_HUMAN Antiviral innate immune response receptor RIG-I[61.. A 25.0
/34.7		 8
/10		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
8g7u[1] A DDX58_HUMAN Antiviral innate immune response receptor RIG-I[64.. C 22.2
/34.1		 9
/10		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
8g7v[1] A DDX58_HUMAN Antiviral innate immune response receptor RIG-I[64.. C 0.0
/34.3		 7
/9		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
4w7s[1] B PRP28_YEAST Pre-mRNA-splicing ATP-dependent RNA helicase PRP28.. A 0.0
/31.6		 1
/20		 PRP28_YEAST Pre-mRNA-splicing ATP-dependent RNA helicase PRP28..
7w0a[2] H A1ZAW0_DROME Dicer-2, isoform A[1478 aa] A 31.8
/31.0		 22
/55		 A1ZAW0_DROME Dicer-2, isoform A
8hf0[1] D A1ZAW0_DROME Dicer-2, isoform A[1561 aa] A 0.0
/31.0		 1
/11		 A1ZAW0_DROME Dicer-2, isoform A
8hf0[1] A A1ZAW0_DROME Dicer-2, isoform A[1561 aa] D 33.3
/31.0		 3
/13		 A1ZAW0_DROME Dicer-2, isoform A
8hf1[2] D A1ZAW0_DROME Dicer-2, isoform A[1561 aa] A 37.5
/31.0		 8
/28		 A1ZAW0_DROME Dicer-2, isoform A
8hf1[2] A A1ZAW0_DROME Dicer-2, isoform A[1561 aa] D 33.3
/31.0		 3
/31		 A1ZAW0_DROME Dicer-2, isoform A
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
PRECIPITANT
678 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
3tbk[1] C EDO
1,2-ETHANEDIOL[4 atoms] 		A 28.6
/34.9		 7
/7		 DDX58_MOUSE RIG-I Helicase Domain
5jaj[1] H EDO
1,2-ETHANEDIOL[4 atoms] 		A 80.0
/53.9		 5
/5		 G0YYQ5_CHICK LGP2
5jaj[1] I EDO
1,2-ETHANEDIOL[4 atoms] 		A 40.0
/53.9		 5
/5		 G0YYQ5_CHICK LGP2
5jaj[1] J EDO
1,2-ETHANEDIOL[4 atoms] 		A 66.7
/53.9		 6
/6		 G0YYQ5_CHICK LGP2
5jaj[1] K MGF
TRIFLUOROMAGNESATE[4 atoms] 		A 0.0
/53.9		 1
/1		 G0YYQ5_CHICK LGP2
5jaj[1] F ALF
TETRAFLUOROALUMINATE ION[5 atoms] 		A 100.0
/53.9		 8
/8		 G0YYQ5_CHICK LGP2
5jb2[2] F ALF
TETRAFLUOROALUMINATE ION[5 atoms] 		A 100.0
/53.2		 8
/8		 G0YYQ5_CHICK LGP2
6gkh[3] E ALF
TETRAFLUOROALUMINATE ION[5 atoms] 		A 100.0
/44.3		 6
/6		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
7jl0[4] G ALF
TETRAFLUOROALUMINATE ION[5 atoms] 		C 100.0
/44.9		 6
/6		 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..
7jl1[4] F ALF
TETRAFLUOROALUMINATE ION[5 atoms] 		A 100.0
/35.6		 5
/5		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
2w4r[4] F SO4
SULFATE ION[5 atoms] 		A 100.0
/100.0		 3
/3		 DHX58_HUMAN PROBABLE ATP-DEPENDENT RNA HELICASE DHX58
2w4r[1] K SO4
SULFATE ION[5 atoms] 		C 100.0
/100.0		 4
/4		 DHX58_HUMAN PROBABLE ATP-DEPENDENT RNA HELICASE DHX58
2ykg[3] E SO4
SULFATE ION[5 atoms] 		A 85.7
/34.5		 7
/7		 DDX58_HUMAN PROBABLE ATP-DEPENDENT RNA HELICASE DDX58
3ts9[1] B SO4
SULFATE ION[5 atoms] 		A 100.0
/41.8		 1
/1		 IFIH1_MOUSE IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
3ts9[4] D SO4
SULFATE ION[5 atoms] 		A 50.0
/41.8		 4
/4		 IFIH1_MOUSE IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
4kbg[1] E SO4
SULFATE ION[5 atoms] 		B 0.0
/37.1		 1
/8		 Q72GF3_THET2 Heat resistant RNA dependent ATPase
4kbg[1] H SO4
SULFATE ION[5 atoms] 		B 20.0
/37.1		 5
/5		 Q72GF3_THET2 Heat resistant RNA dependent ATPase
4on9[2] D SO4
SULFATE ION[5 atoms] 		A 50.0
/36.3		 4
/4		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
4on9[2] E SO4
SULFATE ION[5 atoms] 		A 0.0
/36.3		 1
/1		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5jbg[1] G SO4
SULFATE ION[5 atoms] 		A 33.3
/53.4		 3
/3		 G0YYQ5_CHICK LGP2
5jbg[1] H SO4
SULFATE ION[5 atoms] 		A 66.7
/53.4		 3
/3		 G0YYQ5_CHICK LGP2
5jbg[1] I SO4
SULFATE ION[5 atoms] 		A 0.0
/53.4		 1
/1		 G0YYQ5_CHICK LGP2
5jbg[1] J SO4
SULFATE ION[5 atoms] 		A 0.0
/53.4		 4
/4		 G0YYQ5_CHICK LGP2
5tnu[4] C SO4
SULFATE ION[5 atoms] 		A 100.0
/38.0		 6
/6		 Q970I2_SULTO DNA-dependent ATPase XPBII
5tnu[1] E SO4
SULFATE ION[5 atoms] 		A 100.0
/38.0		 1
/1		 Q970I2_SULTO DNA-dependent ATPase XPBII
5tnu[2] F SO4
SULFATE ION[5 atoms] 		A 100.0
/38.0		 1
/3		 Q970I2_SULTO DNA-dependent ATPase XPBII
5tnu[2] G SO4
SULFATE ION[5 atoms] 		A 25.0
/38.0		 4
/4		 Q970I2_SULTO DNA-dependent ATPase XPBII
5tnu[1] H SO4
SULFATE ION[5 atoms] 		A 0.0
/38.0		 2
/6		 Q970I2_SULTO DNA-dependent ATPase XPBII
5tnu[1] Y SO4
SULFATE ION[5 atoms] 		B 100.0
/38.1		 1
/3		 Q970I2_SULTO DNA-dependent ATPase XPBII
1wp9[6] G PO4
PHOSPHATE ION[5 atoms] 		A 85.7
/31.2		 7
/7		 Q8TZH8_PYRFU ATP-dependent RNA helicase, putative
4d26[1] D PO4
PHOSPHATE ION[5 atoms] 		A 100.0
/35.6		 1
/9		 O01378_BOMMO BMVLG PROTEIN
6p4w[2] E PO4
PHOSPHATE ION[5 atoms] 		A 80.0
/37.7		 5
/5		 Q970I2_SULTO DNA-dependent ATPase XPBII
4a2v[3] C GOL
GLYCEROL[6 atoms] 		A 33.3
/32.4		 6
/8		 D3TI84_ANAPL RETINOIC ACID INDUCIBLE PROTEIN I
4a2v[1] D GOL
GLYCEROL[6 atoms] 		A 66.7
/32.4		 3
/3		 D3TI84_ANAPL RETINOIC ACID INDUCIBLE PROTEIN I
4d25[1] E GOL
GLYCEROL[6 atoms] 		A 0.0
/35.6		 2
/3		 O01378_BOMMO BMVLG PROTEIN
5e3h[1] H GOL
GLYCEROL[6 atoms] 		A 100.0
/35.6		 5
/5		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5tnu[1] S GOL
GLYCEROL[6 atoms] 		A 25.0
/38.0		 4
/4		 Q970I2_SULTO DNA-dependent ATPase XPBII
5tnu[1] T GOL
GLYCEROL[6 atoms] 		A 0.0
/38.0		 1
/3		 Q970I2_SULTO DNA-dependent ATPase XPBII
5tnu[1] BA GOL
GLYCEROL[6 atoms] 		B 33.3
/38.1		 3
/4		 Q970I2_SULTO DNA-dependent ATPase XPBII
6p4o[2] G GOL
GLYCEROL[6 atoms] 		A 100.0
/37.7		 1
/1		 Q970I2_SULTO DNA-dependent ATPase XPBII
6p4o[1] L GOL
GLYCEROL[6 atoms] 		E 100.0
/38.0		 1
/1		 Q970I2_SULTO DNA-dependent ATPase XPBII
4a36[2] I AF3
ALUMINUM FLUORIDE[4 atoms] 		A 100.0
/36.2		 9
/9		 D3TI84_ANAPL RETINOIC ACID INDUCIBLE PROTEIN I
5e3h[1] J BEF
BERYLLIUM TRIFLUORIDE ION[4 atoms] 		A 100.0
/35.6		 5
/5		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f9f[1] O ETF
TRIFLUOROETHANOL[6 atoms] 		A 66.7
/35.1		 9
/9		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f9f[1] Y ETF
TRIFLUOROETHANOL[6 atoms] 		E 40.0
/35.0		 5
/5		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f9f[2] CA ETF
TRIFLUOROETHANOL[6 atoms] 		G 0.0
/35.2		 5
/5		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f9f[1] NA ETF
TRIFLUOROETHANOL[6 atoms] 		K 66.7
/35.1		 6
/6		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f9f[1] P BU3
(R,R)-2,3-BUTANEDIOL[6 atoms] 		A 71.4
/35.1		 7
/7		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f9f[1] Q BU3
(R,R)-2,3-BUTANEDIOL[6 atoms] 		A 80.0
/35.1		 5
/5		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f9f[2] U BU3
(R,R)-2,3-BUTANEDIOL[6 atoms] 		A 0.0
/35.1		 5
/5		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f9f[1] T BU3
(R,R)-2,3-BUTANEDIOL[6 atoms] 		C 25.0
/35.1		 4
/4		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f9f[1] V BU3
(R,R)-2,3-BUTANEDIOL[6 atoms] 		C 25.0
/35.1		 4
/4		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f9f[5] W BU3
(R,R)-2,3-BUTANEDIOL[6 atoms] 		C 62.5
/35.1		 8
/8		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f9f[2] AA BU3
(R,R)-2,3-BUTANEDIOL[6 atoms] 		E 44.4
/35.0		 9
/9		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f9f[1] EA BU3
(R,R)-2,3-BUTANEDIOL[6 atoms] 		G 0.0
/35.2		 5
/5		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.