Contact Molecules for Homologous Proteins

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PID QueryLength Homolgous Sequence in PDB UniProt Query TITLE
882598 221 12 P59596(VME1_SARS) RecName: Full=Membrane protein ; Short=M protein ;AltName: Full=E1 glycoprotein ;AltName: Full=Matrix glycoprotein ;AltName: Full=Membrane glycoprotein ;
QUERYSEQ 
MADNGTITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRGTIVTRPLMESELVIGAVIIRGHLRM
AGHSLGRCDIKDLPKEITVATSRTLSYYKLGASQRVGTDSGFAAYNRYRIGNYKLNTDHAGSNDNIALLVQ
[BLAST file for PDB] (plain) (bar) (multiple alignment) [BLAST for UniProt: (plain) (bar) (multiple alignment) (PSSM file) ]

UniProt Feature Tables [P59596(VME1_SARS)]

221
region name description
1-221 CHAIN /note="Membrane protein" /id="PRO_0000106035"
1-18 TOPO_DOM /note="Virion surface"
19-39 TRANSMEM /note="Helical"
40-49 TOPO_DOM /note="Intravirion"
50-70 TRANSMEM /note="Helical"
71-78 TOPO_DOM /note="Virion surface"
79-99 TRANSMEM /note="Helical"
100-221 TOPO_DOM /note="Intravirion"
1-6 DISORDER predicted by DISOPRED

MONOMER
221
pdb_id a1 identity[%]2 description
7vgr F 91.4 VME1_SARS2 Membrane protein 
1.a1:asym_id for the homologue. 2.identity[%]2:sequence identity between the query and the homologue.
HETERO
221 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
7vgr[2] A YN7756_1 Fab light chain[218 aa] E 100.0
/91.4		 3
/3		 VME1_SARS2 Membrane protein
7vgr[2] C YN7756_1 Fab light chain[218 aa] E 100.0
/91.4		 4
/4		 VME1_SARS2 Membrane protein
7vgr[2] B YN7756_1 Fab heavy chain[220 aa] E 88.9
/91.4		 9
/9		 VME1_SARS2 Membrane protein
7vgr[2] D YN7756_1 Fab heavy chain[220 aa] E 50.0
/91.4		 4
/4		 VME1_SARS2 Membrane protein
7vgs[2] B YN7717_9 Fab light chain[218 aa] A 88.9
/91.3		 9
/9		 VME1_SARS2 Membrane protein
7vgs[2] E YN7717_9 Fab light chain[218 aa] A 66.7
/91.3		 3
/3		 VME1_SARS2 Membrane protein
7vgs[2] C YN7717_9 Fab heavy chain[213 aa] A 100.0
/91.3		 9
/9		 VME1_SARS2 Membrane protein
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
COMPOUND
221 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
7y9b[4] E N8E
3,6,9,12,15-PENTAOXATRICOSAN-1-OL[24 atoms] 		A 25.0
/45.9		 4
/4		 VME1_BCHK5 Membrane protein
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
HOMO
221 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
7vgr[4] F VME1_SARS2 Membrane protein[198 aa] E 93.5
/91.4		 46
/46		 VME1_SARS2 Membrane protein
8ctk[2] B VME1_SARS2 Membrane protein[188 aa] A 86.1
/91.5		 36
/36		 VME1_SARS2 Membrane protein
7y96[4] B GFP_AEQVI VME1_BCHK5 GFP_AEQVI Green fluorescent protein,Membrane protein[313 aa].. A 56.7
/47.6		 30
/38		 GFP_AEQVI VME1_BCHK5 GFP_AEQVI Green fluorescent protein,Membrane protein
7y96[4] B GFP_AEQVI VME1_BCHK5 GFP_AEQVI Green fluorescent protein,Membrane protein[313 aa].. A 36.4
/47.6		 11
/11		 GFP_AEQVI VME1_BCHK5 GFP_AEQVI Green fluorescent protein,Membrane protein
7y96[2] B GFP_AEQVI VME1_BCHK5 GFP_AEQVI Green fluorescent protein,Membrane protein[313 aa].. B 43.9
/47.7		 41
/41		 GFP_AEQVI VME1_BCHK5 GFP_AEQVI Green fluorescent protein,Membrane protein
7y9b[4] B VME1_BCHK5 Membrane protein[187 aa] A 44.8
/45.9		 58
/58		 VME1_BCHK5 Membrane protein
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.