Contact Molecules for Homologous Proteins


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PID QueryLength Homolgous Sequence in PDB UniProt Query TITLE
4034113 302 9 P56962(STX17_HUMAN) RecName: Full=Syntaxin-17 ;
QUERYSEQ
MSEDEEKVKLRRLEPAIQKFIKIVIPTDLERLRKHQINIEKYQRCRIWDKLHEEHINAGRTVQQLRSNIREIEKLCLKVRKDDLVLLKRMIDPVKEEASAATAEFLQLHLESVEELKKQFNDEETLLQPPLTRSMTVGGAFHTTEAEASS
QSLTQIYALPEIPQDQNAAESWETLEADLIELSQLVTDFSLLVNSQQEKIDSIADHVNSAAVNVEEGTKNLGKAAKYKLAALPVAGALIGGMVGGPIGLLAGFKVAGIAAALGGGVLGFTGGKLIQRKKQKMMEKLTSSCPDLPSQTDKK
CS
[BLAST file for PDB] (plain) (bar) (multiple alignment) [BLAST for UniProt: (plain) (bar) (multiple alignment) (PSSM file) ]

UniProt Feature Tables [P56962(STX17_HUMAN)]

302
region name description
2-302 CHAIN /note="Syntaxin-17" /id="PRO_0000210228"
2-228 TOPO_DOM /note="Cytoplasmic"
229-249 TRANSMEM /note="Helical"
250-254 TOPO_DOM /note="Lumenal"
255-275 TRANSMEM /note="Helical"
276-302 TOPO_DOM /note="Cytoplasmic"
162-224 DOMAIN /note="t-SNARE coiled-coil homology"
229-275 REGION /note="Necessary and sufficient for localization to autophagosome"
53-123 COILED
1-302 DISORDER predicted by DISOPRED

MONOMER
302
pdb_id a1 identity[%]2 description
7bv6 F 100.0 STX17_HUMAN Syntaxin-17
1.a1:asym_id for the homologue. 2.identity[%]2:sequence identity between the query and the homologue.
HETERO
302 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
1gl2[1] A Q9WUF4 ENDOBREVIN[54 aa] B 48.0
/34.5
25
/26
O70439 SYNTAXIN 7
4wy4[7] A VAMP8_HUMAN Vesicle-associated membrane protein 8[64 aa] B 100.0
/100.0
30
/30
STX17_HUMAN Syntaxin-17
4wy4[7] C SNP29_HUMAN Synaptosomal-associated protein 29[78 aa] B 100.0
/100.0
24
/24
STX17_HUMAN Syntaxin-17
4wy4[1] D SNP29_HUMAN Synaptosomal-associated protein 29[65 aa] B 100.0
/100.0
4
/4
STX17_HUMAN Syntaxin-17
7bv6[6] D SNP29_HUMAN Synaptosomal-associated protein 29[67 aa] B 100.0
/100.0
5
/5
STX17_HUMAN Syntaxin-17
2nps[1] A VAMP4_MOUSE Vesicle-associated membrane protein 4[63 aa] B 41.7
/35.7
24
/27
O70319_RAT Syntaxin 13
2nps[1] C VTI1A_RAT Vesicle transport through interaction with t-SNARE.. B 33.3
/35.7
27
/31
O70319_RAT Syntaxin 13
2nps[1] D STX6_HUMAN Syntaxin-6[63 aa] B 33.3
/35.7
6
/6
O70319_RAT Syntaxin 13
1gl2[1] C VTL1_MOUSE VESICLE TRANSPORT V-SNARE PROTEIN VTI1-LIKE 1[60 a.. B 28.0
/34.5
25
/26
O70439 SYNTAXIN 7
1gl2[1] D STX8_RAT SYNTAXIN 8[55 aa] B 0.0
/34.5
1
/2
O70439 SYNTAXIN 7
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.