Contact Molecules for Homologous Proteins | ||||
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PID | QueryLength | Homolgous Sequence in PDB | UniProt Query | TITLE |
2711687 | 385 | 54 | P35613(BASI_HUMAN) | RecName: Full=Basigin ;AltName: Full=5F7;AltName: Full=Collagenase stimulatory factor;AltName: Full=Extracellular matrix metalloproteinase inducer; Short=EMMPRIN;AltName: Full=Hepatoma-associated antigen ; Short=HAb18G ;AltName: Full=Leukocyte activation antigen M6;AltName: Full=OK blood group antigen;AltName: Full=Tumor cell-derived collagenase stimulatory factor; Short=TCSF;AltName: CD_antigen=CD147;Flags: Precursor; |
QUERYSEQ |
MAAALFVLLGFALLGTHGASGAAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDTCSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWVRAQAVVLVLEPGTVFTTVEDLG SKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKTEFKVDSDDQWGEYSCVFLPEPMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYR CNGTSSKGSDQAIITLRVRSHLAALWPFLGIVAEVLVLVTIIFIYEKRRKPEDVLDDDDAGSAPLKSSGQHQNDKGKNVRQRNSS |
385 | region | name | description |
1-21 | SIGNAL | ||
22-385 | CHAIN | /note="Basigin" /id="PRO_0000014518" | |
138-323 | TOPO_DOM | /note="Extracellular" | |
324-344 | TRANSMEM | /note="Helical" | |
345-385 | TOPO_DOM | /note="Cytoplasmic" | |
37-120 | DOMAIN | /note="Ig-like" | |
138-219 | DOMAIN | /note="Ig-like C2-type" | |
221-315 | DOMAIN | /note="Ig-like V-type" | |
353-385 | REGION | /note="Disordered" | |
356132195-199 | REGION | /note="Essential for interaction with KDR/VEGFR2" | |
1-385 | DISORDER | predicted by DISOPRED |
MONOMER | |||||||
385 | |||||||
pdb_id | a1 | identity[%]2 | description | ||||
6lz0 | B | 100.0 | BASI_HUMAN Basigin | ||||
3qr2 | A | 99.1 | BASI_HUMAN Basigin | ||||
1.a1:asym_id for the homologue. 2.identity[%]2:sequence identity between the query and the homologue. |
HETERO | |||||||
385 | pdb_id | contact mol | homologue | ||||
a3 | description | a4 | identity[%]5 | Ncon6 | description | ||
4u0q[1] | A | B2L3N7_PLAFA Reticulocyte binding protein 5[286 aa] | B | 100.0 /100.0 |
24 /25 |
BASI_HUMAN Basigin | |
4u0q[1] | C | B2L3N7_PLAFA Reticulocyte binding protein 5[285 aa] | D | 100.0 /100.0 |
20 /21 |
BASI_HUMAN Basigin | |
5x0t[2] | A | 6H8 Fab fragment heavy chain[215 aa] | E | 100.0 /100.0 |
9 /9 |
BASI_HUMAN Basigin | |
5x0t[2] | C | 6H8 Fab fragment light chain[213 aa] | E | 100.0 /100.0 |
7 /7 |
BASI_HUMAN Basigin | |
7daa[3] | B | Light chain of antibody Fab fragment[217 aa] | A | 100.0 /98.8 |
14 /14 |
BASI_HUMAN Isoform 2 of Basigin | |
7daa[3] | C | Heavy chain of antibody Fab fragment[212 aa] | A | 100.0 /98.8 |
7 /7 |
BASI_HUMAN Isoform 2 of Basigin | |
7dce[2] | B | XKR8_HUMAN XK-related protein 8[355 aa] | A | 100.0 /98.5 |
12 /12 |
BASI_HUMAN Isoform 2 of Basigin | |
7y1b[1] | B | Heavy chain of 6E7F1[214 aa] | A | 40.0 /50.0 |
10 /11 |
BASI_MOUSE Isoform 2 of Basigin | |
7y1b[1] | C | Light chain of 6E7F1[213 aa] | A | 22.2 /50.0 |
9 /10 |
BASI_MOUSE Isoform 2 of Basigin | |
6a69[1] | A | AT2B1_HUMAN Plasma membrane calcium-transporting ATPase 1[911 .. | B | 75.0 /47.2 |
16 /16 |
NPTN_HUMAN Neuroplastin | |
6lyy[5] | A | MOT1_HUMAN Monocarboxylate transporter 1[382 aa] | B | 100.0 /100.0 |
10 /10 |
BASI_HUMAN Basigin | |
7yr5[1] | B | MOT1_HUMAN Monocarboxylate transporter 1[385 aa] | A | 56.2 /38.6 |
16 /16 |
EMB_HUMAN Embigin | |
7o52[1] | A | m971 Fab Heavy chain[227 aa] | C | 20.0 /30.3 |
15 /15 |
CD22 d6-d7 Ig domains | |
7o52[1] | B | m971 Fab Light chain[215 aa] | C | 33.3 /30.3 |
6 /6 |
CD22 d6-d7 Ig domains | |
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue. | |||||||
COMPOUND | |||||||
385 | pdb_id | contact mol | homologue | ||||
a3 | description | a4 | identity[%]5 | Ncon6 | description | ||
2wv3[1] | B |
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms].. |
A | 0.0 /35.8 |
3 /6 |
NPTN_RAT NEUROPLASTIN | |
2wv3[1] | C |
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms].. |
A | 60.0 /35.8 |
5 /5 |
NPTN_RAT NEUROPLASTIN | |
5k6z[1] | D |
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms].. |
A | 0.0 /29.6 |
2 /2 |
SDK2_MOUSE SDK1_MOUSE Protein sidekick-2,Protein sidekick-1 chimera | |
5k6z[1] | E |
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms].. |
A | 0.0 /29.6 |
1 /1 |
SDK2_MOUSE SDK1_MOUSE Protein sidekick-2,Protein sidekick-1 chimera | |
6a69[1] | C |
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms].. |
B | 75.0 /47.2 |
4 /4 |
NPTN_HUMAN Neuroplastin | |
6dld[3] | G |
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms].. |
A | 0.0 /30.6 |
2 /2 |
IGLO5_HUMAN IgLON family member 5 | |
6dle[1] | I |
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms].. |
B | 100.0 /30.6 |
1 /1 |
IGLO5_HUMAN IgLON family member 5 | |
6zr7[1] | G |
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms].. |
A | 50.0 /40.5 |
2 /2 |
DSCAM_HUMAN Down syndrome cell adhesion molecule | |
7o52[1] | I |
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms].. |
C | 0.0 /30.3 |
2 /2 |
CD22 d6-d7 Ig domains | |
8a0y[2] | O |
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms].. |
A | 50.0 /32.1 |
2 /2 |
CNTN2_MOUSE Contactin-2 | |
8a0y[3] | P |
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms].. |
A | 100.0 /32.1 |
1 /1 |
CNTN2_MOUSE Contactin-2 | |
8k53[1] | H |
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms].. |
A | 100.0 /32.5 |
1 /1 |
CNTN2_HUMAN Contactin-2 | |
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue. | |||||||
METAL | |||||||
385 | pdb_id | contact mol | homologue | ||||
a3 | description | a4 | identity[%]5 | Ncon6 | description | ||
7daa[1] | D |
CD
CADMIUM ION[1 atoms] |
A | 100.0 /98.8 |
1 /1 |
BASI_HUMAN Isoform 2 of Basigin | |
7daa[1] | E |
CD
CADMIUM ION[1 atoms] |
A | 100.0 /98.8 |
1 /1 |
BASI_HUMAN Isoform 2 of Basigin | |
7daa[1] | F |
CD
CADMIUM ION[1 atoms] |
A | 100.0 /98.8 |
1 /1 |
BASI_HUMAN Isoform 2 of Basigin | |
3i84[4] | C |
CL
CHLORIDE ION[1 atoms] |
B | 100.0 /98.7 |
1 /1 |
Q54A51_HUMAN Cervical EMMPRIN | |
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue. | |||||||
OTHERPOLY | |||||||
385 | pdb_id | contact mol | homologue | ||||
a3 | description | a4 | identity[%]5 | Ncon6 | description | ||
6zr7[1] | B | N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galact.. | A | 0.0 /40.5 |
1 /8 |
DSCAM_HUMAN Down syndrome cell adhesion molecule | |
6zr7[1] | C | beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-b.. | A | 0.0 /40.5 |
6 /6 |
DSCAM_HUMAN Down syndrome cell adhesion molecule | |
7ok5[1] | D | alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(.. | A | 0.0 /36.1 |
1 /7 |
Neurofascin 155 | |
7ol4[1] | P | alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(.. | C | 0.0 /35.6 |
6 /6 |
Neurofascin | |
7ol4[1] | T | alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(.. | D | 0.0 /35.6 |
5 /6 |
Neurofascin | |
7ok5[3] | E | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-bet.. | A | 0.0 /36.1 |
5 /7 |
Neurofascin 155 | |
8a0y[1] | I | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-bet.. | B | 0.0 /32.1 |
3 /3 |
CNTN2_MOUSE Contactin-2 | |
7ok5[2] | G | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose.. | B | 0.0 /36.1 |
2 /9 |
Neurofascin 155 | |
8a0y[1] | J | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose.. | B | 0.0 /32.1 |
2 /2 |
CNTN2_MOUSE Contactin-2 | |
8a0y[1] | F | alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-.. | A | 0.0 /32.1 |
1 /1 |
CNTN2_MOUSE Contactin-2 | |
8a0y[1] | M | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose.. | C | 0.0 /32.1 |
2 /2 |
CNTN2_MOUSE Contactin-2 | |
5k6z[1] | C | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-a.. | B | 0.0 /29.6 |
2 /2 |
SDK2_MOUSE SDK1_MOUSE Protein sidekick-2,Protein sidekick-1 chimera | |
8k53[2] | D | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-a.. | A | 0.0 /32.5 |
1 /1 |
CNTN2_HUMAN Contactin-2 | |
8k53[1] | E | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-a.. | B | 33.3 /32.0 |
3 /3 |
CNTN2_HUMAN Contactin-2 | |
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue. | |||||||
HOMO | |||||||
385 | pdb_id | contact mol | homologue | ||||
a3 | description | a4 | identity[%]5 | Ncon6 | description | ||
3qqn[6] | B | BASI_HUMAN Basigin[116 aa] | A | 100.0 /98.3 |
14 /15 |
BASI_HUMAN Basigin | |
3qr2[2] | A | BASI_HUMAN Basigin[117 aa] | A | 100.0 /99.1 |
1 /1 |
BASI_HUMAN Basigin | |
3qr2[4] | B | BASI_HUMAN Basigin[116 aa] | A | 100.0 /99.1 |
7 /7 |
BASI_HUMAN Basigin | |
3qr2[2] | B | BASI_HUMAN Basigin[116 aa] | B | 100.0 /99.1 |
7 /7 |
BASI_HUMAN Basigin | |
3i84[6] | A | Q54A51_HUMAN Cervical EMMPRIN[79 aa] | A | 100.0 /98.7 |
7 /7 |
Q54A51_HUMAN Cervical EMMPRIN | |
3i84[4] | B | Q54A51_HUMAN Cervical EMMPRIN[85 aa] | A | 100.0 /98.7 |
36 /36 |
Q54A51_HUMAN Cervical EMMPRIN | |
8k53[1] | B | CNTN2_HUMAN Contactin-2[573 aa] | A | 33.3 /32.5 |
6 /12 |
CNTN2_HUMAN Contactin-2 | |
1nbq[2] | B | JAM1_HUMAN Junctional adhesion molecule 1[208 aa] | A | 0.0 /32.2 |
7 /11 |
JAM1_HUMAN Junctional adhesion molecule 1 | |
8a0y[2] | C | CNTN2_MOUSE Contactin-2[574 aa] | A | 21.4 /32.1 |
14 /20 |
CNTN2_MOUSE Contactin-2 | |
8k53[1] | A | CNTN2_HUMAN Contactin-2[777 aa] | B | 30.0 /32.0 |
10 /13 |
CNTN2_HUMAN Contactin-2 | |
5k6z[2] | B | SDK2_MOUSE SDK1_MOUSE Protein sidekick-2,Protein sidekick-1 chimera[378 .. | A | 16.7 /29.6 |
6 /27 |
SDK2_MOUSE SDK1_MOUSE Protein sidekick-2,Protein sidekick-1 chimera | |
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue. | |||||||
PRECIPITANT | |||||||
385 | pdb_id | contact mol | homologue | ||||
a3 | description | a4 | identity[%]5 | Ncon6 | description | ||
3b5h[1] | E |
ACT
ACETATE ION[4 atoms] |
D | 100.0 /100.0 |
2 /2 |
Q54A51_HUMAN Cervical EMMPRIN | |
7o52[1] | D |
SO4
SULFATE ION[5 atoms] |
C | 0.0 /30.3 |
1 /1 |
CD22 d6-d7 Ig domains | |
7o52[1] | J |
SO4
SULFATE ION[5 atoms] |
C | 50.0 /30.3 |
2 /2 |
CD22 d6-d7 Ig domains | |
7o52[1] | K |
SO4
SULFATE ION[5 atoms] |
C | 0.0 /30.3 |
3 /3 |
CD22 d6-d7 Ig domains | |
7o52[1] | L |
GOL
GLYCEROL[6 atoms] |
C | 0.0 /30.3 |
3 /3 |
CD22 d6-d7 Ig domains | |
5k6z[2] | H |
MPD
(4S)-2-METHYL-2,4-PENTANEDIOL[8 atoms] |
A | 0.0 /29.6 |
2 /5 |
SDK2_MOUSE SDK1_MOUSE Protein sidekick-2,Protein sidekick-1 chimera | |
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue. |