HOMCOS(prot_sch_conbars.cgi):

		Contact Molecules for Homologous Proteins
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PID

QueryLength

Homolgous Sequence in PDB

UniProt Query

TITLE

1683125

4405

500

P0DTC1(R1A_SARS2)

RecName: Full=Replicase polyprotein 1a; Short=pp1a;AltName: Full=ORF1a polyprotein;Contains: RecName: Full=Host translation inhibitor nsp1; AltName: Full=Leader protein; AltName: Full=Non-structural protein 1; Short=nsp1;Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog;Contains: RecName: Full=Papain-like protease nsp3 ; EC=3.4.19.12 ; EC=3.4.22.-; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinase; Short=PL-PRO;Contains: RecName: Full=Non-structural protein 4; Short=nsp4;Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; EC=3.4.22.69; AltName: Full=Main protease; Short=Mpro ; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=SARS coronavirus main proteinase;Contains: RecName: Full=Non-structural protein 6; Short=nsp6;Contains: RecName: Full=Non-structural protein 7; Short=nsp7;Contains: RecName: Full=Non-structural protein 8; Short=nsp8;Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; EC=2.7.7.50 ;Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL;Contains: RecName: Full=Non-structural protein 11; Short=nsp11;

QUERYSEQ

MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGVLPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRKVLLRKNGNKGAGGHSYGADLKSFDLGDELG
TDPYEDFQENWNTKHSSGVTRELMRELNGGAYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAWYTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRI
RSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKCAYWVPRASANIGCNHTGVVGEGSEGLNDNL
LEILQKEKVNINIVGDFKLNEEIAIILASFSASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEAARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAY
ITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKCVKSREETGLLMPLKAPKEIIFLEGETLPTE
VLTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGGAPTKVTFGDDTVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDEW
SMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAK
KVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVE
QKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTAVVIPTKKAGGTTEMLAKALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCK
SAFYILPSIISNEKQEILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSKTPEEH
FIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYYTSNPTTFHLDGEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSAL
NHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQ
ESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYPNASFDNFKFVCDNIKFADDLNQLTGYKKP
ASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAAYV
DNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAAL
GVLMSNLGMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHV
VDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCE
ESSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSARHIN
AQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDGGVTRDIASTDTCFANKHADFDTWFSQRGGSYTNDKA
CPLIAAVITREVGFVVPGLPGTILRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCYDTNVLEGSVAYESLRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEAGVCVST
SGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYIICIST
KHFYWFFSNYLKRRVVFNGVSFSTFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHLAKALNDFSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVY
CPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVD
RQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQW
SLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLMNVLTLVYKVYYGNALDQAISMWALIISVTSNYSGVVTT
VMFLARGIVFMCVEYCPIFFITGNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILL
AKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAFATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIIN
NARDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD
GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYV
QIPTTCANDPVGFTLKNTVCTVCGMWKGYGCSCDQLREPMLQSADAQSFLNGFAV

[BLAST file for PDB] (plain) (bar) (multiple alignment) [BLAST for UniProt: (plain) (bar) (multiple alignment) (PSSM file) ]

UniProt Feature Tables [P0DTC1(R1A_SARS2)]

4405
	region	name	description
	1-4405	CHAIN	/note="Replicase polyprotein 1a" /id="PRO_0000449634"
	1-180	CHAIN	/note="Host translation inhibitor nsp1" /id="PRO_0000449635"
	181-818	CHAIN	/note="Non-structural protein 2" /id="PRO_0000449636"
	819-2763	CHAIN	/note="Papain-like protease nsp3" /id="PRO_0000449637"
	2764-3263	CHAIN	/note="Non-structural protein 4" /id="PRO_0000449638"
	3264-3569	CHAIN	/note="3C-like proteinase nsp5" /id="PRO_0000449639"
	3570-3859	CHAIN	/note="Non-structural protein 6" /id="PRO_0000449640"
	3860-3942	CHAIN	/note="Non-structural protein 7" /id="PRO_0000449641"
	3943-4140	CHAIN	/note="Non-structural protein 8" /id="PRO_0000449642"
	4141-4253	CHAIN	/note="RNA-capping enzyme subunit nsp9" /id="PRO_0000449643"
	4254-4392	CHAIN	/note="Non-structural protein 10" /id="PRO_0000449644"
	4393-4405	CHAIN	/note="Non-structural protein 11" /id="PRO_0000449645"
	1-2225	TOPO_DOM	/note="Cytoplasmic"
	2226-2246	TRANSMEM	/note="Helical"
	2247-2317	TOPO_DOM	/note="Lumenal"
	2318-2338	TRANSMEM	/note="Helical"
	2339-2775	TOPO_DOM	/note="Cytoplasmic"
	2776-2796	TRANSMEM	/note="Helical"
	2797-3044	TOPO_DOM	/note="Lumenal"
	3045-3065	TRANSMEM	/note="Helical"
	3066-3099	TOPO_DOM	/note="Cytoplasmic"
	3100-3120	TRANSMEM	/note="Helical"
	3121-3127	TOPO_DOM	/note="Lumenal"
	3128-3148	TRANSMEM	/note="Helical"
	3149-3586	TOPO_DOM	/note="Cytoplasmic"
	3587-3607	TRANSMEM	/note="Helical"
	3608-3608	TOPO_DOM	/note="Lumenal"
	3609-3629	TRANSMEM	/note="Helical"
	3630-3634	TOPO_DOM	/note="Cytoplasmic"
	3635-3655	TRANSMEM	/note="Helical"
	3656-3673	TOPO_DOM	/note="Lumenal"
	3674-3694	TRANSMEM	/note="Helical"
	3695-3729	TOPO_DOM	/note="Cytoplasmic"
	3730-3750	TRANSMEM	/note="Helical"
	3751-3778	TOPO_DOM	/note="Lumenal"
	3779-3799	TRANSMEM	/note="Helical"
	3800-4405	TOPO_DOM	/note="Cytoplasmic"
	12-127	DOMAIN	/note="CoV Nsp1 globular"
	148-179	DOMAIN	/note="BetaCoV Nsp1 C-terminal"
	183-456	DOMAIN	/note="CoV Nsp2 N-terminal"
	458-688	DOMAIN	/note="CoV Nsp2 middle"
	690-818	DOMAIN	/note="CoV Nsp2 C-terminal"
	821-929	DOMAIN	/note="Ubiquitin-like 1"
	1025-1194	DOMAIN	/note="Macro 1"
	1231-1359	DOMAIN	/note="Macro 2"
	1367-1494	DOMAIN	/note="Macro 3"
	1496-1561	DOMAIN	/note="DPUP"
	1565-1620	DOMAIN	/note="Ubiquitin-like 2"
	1634-1898	DOMAIN	/note="Peptidase C16"
	1911-2021	DOMAIN	/note="Nucleic acid-binding"
	2046-2155	DOMAIN	/note="G2M"
	2247-2317	DOMAIN	/note="3Ecto"
	2395-2763	DOMAIN	/note="CoV Nsp3 Y"
	3165-3263	DOMAIN	/note="Nsp4C"
	3264-3569	DOMAIN	/note="Peptidase C30"
	3860-3942	DOMAIN	/note="RdRp Nsp7 cofactor"
	3943-4140	DOMAIN	/note="RdRp Nsp8 cofactor"
	4141-4253	DOMAIN	/note="Nsp9 ssRNA-binding"
	4254-4392	DOMAIN	/note="ExoN/MTase coactivator"
	1752-1789	ZN_FING	/note="C4-type"
	154-180	REGION	/note="Binding to 40s ribosome mRNA entry channel"
	200-236	REGION	/note="C2H2"
	323-344	REGION	/note="C4"
	370-416	REGION	/note="C2HC"
	926-999	REGION	/note="Disordered"
	2395-2485	REGION	/note="Y1"
	2399-2412	REGION	/note="ZF1"
	2445-2455	REGION	/note="ZF2"
	2486-2763	REGION	/note="CoV-Y"
	2486-2580	REGION	/note="Y2"
	2581-2662	REGION	/note="Y3"
	2663-2763	REGION	/note="Y4"
	927-947	COMPBIAS	/note="Acidic residues"
	984-999	COMPBIAS	/note="Polar residues"
	1674-1674	ACT_SITE	/note="For PL-PRO activity" ECO:0000269\|PubMed:32726803"
	1835-1835	ACT_SITE	/note="For PL-PRO activity"
	1849-1849	ACT_SITE	/note="For PL-PRO activity"
	3304-3304	ACT_SITE	/note="For 3CL-PRO activity" ECO:0000269\|PubMed:32198291"
	3408-3408	ACT_SITE	/note="For 3CL-PRO activity" ECO:0000269\|PubMed:32198291"
	200-200	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="1"
	231-231	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="1"
	234-234	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="1"
	236-236	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="1"
	323-323	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="2"
	326-326	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="2"
	341-341	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="2"
	344-344	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="2"
	370-370	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="3"
	373-373	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="3"
	382-382	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="3"
	416-416	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="3"
	1752-1752	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="4"
	1755-1755	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="4"
	1787-1787	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="4"
	1789-1789	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="4"
	2399-2399	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="5"
	2404-2404	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="5"
	2409-2409	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="5"
	2412-2412	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="5"
	2445-2445	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="6"
	2448-2448	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="6"
	2452-2452	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="6"
	2455-2455	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="6"
	4327-4327	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="7"
	4330-4330	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="7"
	4336-4336	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="7"
	4343-4343	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="7"
	4370-4370	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="8"
	4373-4373	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="8"
	4381-4381	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="8"
	4383-4383	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="8"
	1-4405	DISORDER	predicted by DISOPRED

MONOMER

4405

pdb_id a¹ identity[%]² description

7msw A 100.0 R1AB_SARS2 Non-structural protein 2

6wuu B 98.8 R1AB_SARS2 Non-structural protein 3

6xbi A 100.0 R1AB_SARS2 3C-like proteinase

1.a¹:asym_id for the homologue. 2.identity[%]²:sequence identity between the query and the homologue.

HETERO

4405 pdb_id contact mol homologue

a³ description a⁴ identity[%]⁵ Ncon⁶ description

6lu7[2] B N-[(5-METHYLISOXAZOL-3-YL)CARBONYL]ALANYL-L-VALYL-.. A 100.0
/100.0 22
/22 R1AB_SARS2 3C-like proteinase

6lu7[2] B N-[(5-METHYLISOXAZOL-3-YL)CARBONYL]ALANYL-L-VALYL-.. A 100.0
/100.0 1
/1 R1AB_SARS2 3C-like proteinase

6xa9[3] B ISG15_HUMAN ISG15 CTD-propargylamide[80 aa] A 100.0
/100.0 22
/22 R1AB_SARS2 Non-structural protein 3

6xbi[1] C inhibitor UAW248[5 aa] A 100.0
/100.0 20
/20 R1AB_SARS2 3C-like proteinase

6xch[4] B Leupeptin[4 aa] A 100.0
/100.0 13
/13 R1AB_SARS2 3C-like proteinase

6xfn[2] B UAW243[4 aa] A 100.0
/100.0 14
/14 R1AB_SARS2 3C-like proteinase

7aeg[1] B N-[(benzyloxy)carbonyl]-L-valyl-N-[(1S)-1-(carboxy.. A 100.0
/100.0 19
/19 R1AB_SARS2 3C-like proteinase

7m2p[2] B Inhibitor 18 in bound form[4 aa] A 100.0
/100.0 20
/20 R1AB_SARS2 3C-like proteinase

7z4s[1] C Macrocyclic peptide inhibitor[15 aa] A 100.0
/100.0 1
/1 R1A_SARS2 3C-like proteinase nsp5

7z4s[1] D Macrocyclic peptide inhibitor[15 aa] A 100.0
/100.0 26
/26 R1A_SARS2 3C-like proteinase nsp5

8cx9[8] G RL40_HUMAN Ubiquitin variant UbV.CV2.1[75 aa] A 100.0
/100.0 12
/12 R1A_SARS2 Papain-like protease nsp3

7rbs[5] B ISG15_HUMAN Ubiquitin-like protein ISG15[157 aa] A 96.7
/99.7 30
/30 R1A_SARS2 Papain-like protease

7dvp[2] B R1AB_SARS2 nsp4/5 peptidyl substrate[10 aa] A 96.0
/99.7 25
/25 R1AB_SARS2 3C-like proteinase

7dvw[2] B R1AB_SARS2 nsp5/6 peptidyl substrate[9 aa] A 100.0
/99.7 22
/22 R1AB_SARS2 3C-like proteinase

7dvx[2] B R1AB_SARS2 nsp6/7 peptidyl substrate[10 aa] A 95.7
/99.7 23
/23 R1AB_SARS2 3C-like proteinase

7dvx[2] B R1AB_SARS2 nsp6/7 peptidyl substrate[10 aa] A 100.0
/99.7 1
/1 R1AB_SARS2 3C-like proteinase

7dw6[2] B R1AB_SARS2 nsp14/15 peptidyl substrate[8 aa] A 95.7
/99.7 23
/23 R1AB_SARS2 3C-like proteinase

7mb5[1] C R1AB_SARS2 SER-GLY-VAL-THR-PHE-GLN[6 aa] A 95.5
/99.7 22
/22 R1AB_SARS2 3C-like proteinase

7mb8[1] H R1AB_SARS2 SER-ALA-VAL-LYS-LEU-GLN[6 aa] D 95.2
/99.7 21
/21 R1AB_SARS2 3C-like proteinase

7n6n[1] C R1AB_SARS2 3C-like proteinase[5 aa] A 94.7
/99.7 19
/19 R1AB_SARS2 3C-like proteinase

7n6n[1] C R1AB_SARS2 3C-like proteinase[5 aa] B 100.0
/99.7 1
/1 R1AB_SARS2 3C-like proteinase

7n89[2] C ACE-SER-ALA-VAL-LEU-GLN-SER-GLY-PHE-NH2[10 aa] A 96.0
/99.7 25
/25 R1AB_SARS2 3C-like proteinase

8eir[2] C R1A_SARS2 nsp7-nsp10 of Replicase polyprotein 1a[10 aa] A 95.0
/99.7 20
/20 R1AB_SARS2 3C-like proteinase nsp5

7lmc[5] A R1AB_SARS2 Non-structural protein 4 peptide[6 aa] C 95.0
/99.7 20
/20 R1AB_SARS2 3C-like proteinase

7mgs[2] B SER-ALA-VAL-LEU-GLN-SER-GLY-PHE[8 aa] A 95.8
/99.7 24
/24 R1AB_SARS2 3C-like proteinase

7t70[1] D Nonstructural protein 4/5[12 aa] B 96.3
/99.7 27
/27 R1AB_SARS2 3C-like proteinase

7t8m[1] C Nonstructural protein 5/6[9 aa] A 95.8
/99.7 24
/24 R1AB_SARS2 3C-like proteinase

6xaa[3] B J3QS39_HUMAN Ubiquitin-propargylamide[76 aa] A 100.0
/100.0 25
/25 R1AB_SARS2 Non-structural protein 3

7uv5[1] C UBB_HUMAN Ubiquitin[41 aa] A 100.0
/99.4 10
/10 R1A_SARS2 Papain-like protease nsp3

6wuu[5] E VIR250[5 aa] A 100.0
/99.7 18
/18 R1AB_SARS2 Non-structural protein 3

3.a³:asym_id for the contact molecule. 4.a⁴:asym_id for the template homologue. 5.identity[%]⁵:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon⁶:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.

COMPOUND

4405 pdb_id contact mol homologue

a³ description a⁴ identity[%]⁵ Ncon⁶ description

6m2n[4] E 3WL
5,6,7-trihydroxy-2-phenyl-4H-chromen-4-one[20 atom.. A 100.0
/100.0 13
/13 R1AB_SARS2 3C-like proteinase

6w63[4] B X77
N-(4-tert-butylphenyl)-N-[(1R)-2-(cyclohexylamino).. A 100.0
/100.0 16
/16 R1AB_SARS2 3C-like proteinase

6wnp[6] B U5G
boceprevir (bound form)[37 atoms] A 100.0
/100.0 19
/19 R1AB_SARS2 3C-like proteinase

6wtk[4] B UED
N~2~-[(benzyloxy)carbonyl]-N-{(2S)-1-hydroxy-3-[(3.. A 100.0
/100.0 17
/17 R1AB_SARS2 3C-like proteinase

7qka[2] E UED
N~2~-[(benzyloxy)carbonyl]-N-{(2S)-1-hydroxy-3-[(3.. A 100.0
/100.0 1
/1 R1AB_SARS2 3C-like proteinase nsp5

6xb1[4] B NEN
1-ETHYL-PYRROLIDINE-2,5-DIONE[9 atoms] A 100.0
/100.0 4
/4 R1AB_SARS2 3C-like proteinase

6xb2[2] C NEN
1-ETHYL-PYRROLIDINE-2,5-DIONE[9 atoms] A 100.0
/100.0 4
/4 R1AB_SARS2 3C-like proteinase

6xqs[10] B SV6
(1S,3aR,6aS)-2-[(2S)-2-({(2S)-2-cyclohexyl-2-[(pyr.. A 100.0
/100.0 19
/19 R1AB_SARS2 3C-like proteinase

6xqt[4] C NNA
(1R,2S,5S)-3-[N-({1-[(tert-butylsulfonyl)methyl]cy.. A 100.0
/100.0 25
/25 R1AB_SARS2 3C-like proteinase

6xr3[2] B V7G
N-[(2S)-1-({(1S,2S)-1-(1,3-benzothiazol-2-yl)-1-hy.. A 100.0
/100.0 18
/18 R1AB_SARS2 3C-like proteinase

6ynq[2] B P6N
(2~{S})-2-methyl-3,4-dihydro-2~{H}-naphthalen-1-on.. A 100.0
/100.0 8
/8 R1AB_SARS2 3C-like proteinase

6ynq[2] B P6N
(2~{S})-2-methyl-3,4-dihydro-2~{H}-naphthalen-1-on.. A 100.0
/100.0 1
/1 R1AB_SARS2 3C-like proteinase

6yvf[2] B A82
2-[[(1R)-1-(7-methyl-2-morpholin-4-yl-4-oxidanylid.. A 100.0
/100.0 7
/7 R1AB_SARS2 3C-like proteinase

6z2e[2] B Q5T
(4~{S})-4-[[(2~{S})-2-[[(2~{S})-2-[[(2~{S})-2-[3-[.. A 100.0
/100.0 21
/21 R1AB_SARS2 3C-like proteinase

7a1u[2] B FUA
FUSIDIC ACID[37 atoms] A 100.0
/100.0 11
/11 R1AB_SARS2 3C-like proteinase

7abu[2] B R6Q
1'-[2-[4-(trifluoromethyl)phenyl]ethyl]spiro[1~{H}.. A 100.0
/100.0 4
/4 R1AB_SARS2 3C-like proteinase

7abu[2] B R6Q
1'-[2-[4-(trifluoromethyl)phenyl]ethyl]spiro[1~{H}.. A 100.0
/100.0 2
/2 R1AB_SARS2 3C-like proteinase

7adw[2] E R7Q
2-methyl-1-(4-methylphenyl)propan-1-one[12 atoms] A 100.0
/100.0 8
/8 R1AB_SARS2 3C-like proteinase

7aeh[4] F R8H
(2~{R})-5-oxidanylidene-~{N}-[(2~{R},3~{S})-3-oxid.. A 100.0
/100.0 12
/12 R1AB_SARS2 3C-like proteinase nsp5

7aga[2] B LZE
4-{[(2,6-dichlorophenyl)carbonyl]amino}-N-piperidi.. A 100.0
/100.0 11
/11 R1AB_SARS2 3C-like proteinase

7aha[2] J SIN
SUCCINIC ACID[8 atoms] A 100.0
/100.0 6
/6 R1AB_SARS2 3C-like proteinase

7ak4[2] B CB1
5-(AZIRIDIN-1-YL)-2,4-DINITROBENZAMIDE[18 atoms] A 100.0
/100.0 11
/11 R1AB_SARS2 3C-like proteinase

7aku[2] B RN2
Calpeptin[26 atoms] A 100.0
/100.0 13
/13 R1AB_SARS2 3C-like proteinase

7aku[2] B RN2
Calpeptin[26 atoms] A 100.0
/100.0 1
/1 R1AB_SARS2 3C-like proteinase

7amj[2] J RMZ
(3~{S})-3-[2-[4-(3,4-dimethylphenyl)piperazin-1-yl.. A 100.0
/100.0 5
/5 R1AB_SARS2 3C-like proteinase

7amj[2] J RMZ
(3~{S})-3-[2-[4-(3,4-dimethylphenyl)piperazin-1-yl.. A 100.0
/100.0 1
/1 R1AB_SARS2 3C-like proteinase

7ans[2] F RNW
2-[(diphenylmethyl)-oxidanyl-$l^{3}-sulfanyl]-~{N}.. A 100.0
/100.0 13
/13 R1AB_SARS2 3C-like proteinase

7aph[2] B RT2
Tofogliflozin[28 atoms] A 100.0
/100.0 7
/7 R1AB_SARS2 3C-like proteinase

7aqe[2] E RV5
N-1,2,3-Benzothiadiazol-6-yl-N'-[2-oxo-2-(1-piperi.. A 100.0
/100.0 11
/11 R1AB_SARS2 3C-like proteinase

7aqj[2] C RV8
Triglycidyl isocyanurate[21 atoms] A 100.0
/100.0 10
/10 R1AB_SARS2 3C-like proteinase

7au4[2] D RY5
(3~{S})-6-chloranyl-3'-(1,2-oxazol-3-ylmethyl)spir.. A 100.0
/100.0 16
/16 R1AB_SARS2 3C-like proteinase nsp5

7au4[2] D RY5
(3~{S})-6-chloranyl-3'-(1,2-oxazol-3-ylmethyl)spir.. A 100.0
/100.0 1
/1 R1AB_SARS2 3C-like proteinase nsp5

7avd[1] D S1W
3-[[5-[3-(dimethylamino)phenoxy]pyrimidin-2-yl]ami.. B 100.0
/100.0 9
/9 R1AB_SARS2 3C-like proteinase

7awu[2] B S8B
~{N}-propan-2-yl-5-(2-pyridin-4-ylethynyl)pyridine.. A 90.9
/100.0 11
/11 R1AB_SARS2 3C-like proteinase

7aww[2] B CLU
2,6-DICHLORO-N-IMIDAZOLIDIN-2-YLIDENEANILINE[14 at.. A 100.0
/100.0 5
/5 R1AB_SARS2 3C-like proteinase

7ax6[2] B S8H
(2~{S})-2-azanyl-5-oxidanylidene-5-[[(2~{S})-1-oxi.. A 100.0
/100.0 4
/4 R1AB_SARS2 3C-like proteinase

7axm[2] C 93J
(2E)-N-{4-[(3-chloro-4-fluorophenyl)amino]-3-cyano.. A 100.0
/100.0 8
/8 R1AB_SARS2 3C-like proteinase

7axm[2] C 93J
(2E)-N-{4-[(3-chloro-4-fluorophenyl)amino]-3-cyano.. A 100.0
/100.0 3
/3 R1AB_SARS2 3C-like proteinase

7axo[2] G QCP
AR-42[23 atoms] A 100.0
/100.0 9
/9 R1AB_SARS2 3C-like proteinase

7ay7[2] B S8T
9-fluoranyl-3-propan-2-yl-5,6-dihydrobenzo[b][1]be.. A 100.0
/100.0 14
/14 R1AB_SARS2 3C-like proteinase

7ay7[2] B S8T
9-fluoranyl-3-propan-2-yl-5,6-dihydrobenzo[b][1]be.. A 100.0
/100.0 1
/1 R1AB_SARS2 3C-like proteinase

7b2j[2] B SQ2
2-(1H-1,2,3-benzotriazol-1-yl)-1-(4-methylpiperidi.. A 100.0
/100.0 14
/14 R1AB_SARS2 3C-like proteinase nsp5

7b2u[2] C SQ5
(5S)-5-(cyclohexylmethyl)-3-(5-fluoropyridin-3-yl).. A 100.0
/100.0 14
/14 R1AB_SARS2 3C-like proteinase nsp5

7b2u[2] I SQ5
(5S)-5-(cyclohexylmethyl)-3-(5-fluoropyridin-3-yl).. A 100.0
/100.0 1
/1 R1AB_SARS2 3C-like proteinase nsp5

7b5z[2] F SYH
2-(1H-benzo[d][1,2,3]triazol-1-yl)-1-(4-methylenep.. A 100.0
/100.0 14
/14 R1AB_SARS2 3C-like proteinase nsp5

7b77[2] F T0W
2-(benzotriazol-1-yl)-~{N}-ethyl-~{N}-(furan-3-ylm.. A 100.0
/100.0 13
/13 R1AB_SARS2 3C-like proteinase nsp5

7be7[8] N ALD
N-[(benzyloxy)carbonyl]-L-leucyl-N-[(2S)-1-hydroxy.. B 100.0
/100.0 16
/16 R1AB_SARS2 3C-like proteinase

7bij[2] E TU8
(3~{S})-3'-(5-fluoranylpyridin-3-yl)spiro[1,2-dihy.. A 100.0
/100.0 14
/14 R1AB_SARS2 3C-like proteinase nsp5

7bij[2] E TU8
(3~{S})-3'-(5-fluoranylpyridin-3-yl)spiro[1,2-dihy.. A 100.0
/100.0 1
/1 R1AB_SARS2 3C-like proteinase nsp5

7buy[2] B JRY
hexylcarbamic acid[9 atoms] A 100.0
/100.0 8
/8 R1AB_SARS2 3C-like proteinase

7cb7[1] F B1S
(1R,2S)-2-({N-[(benzyloxy)carbonyl]-L-leucyl}amino.. B 100.0
/100.0 14
/14 R1AB_SARS2 3C-like proteinase

7cjm[4] B TTT
5-amino-2-methyl-N-[(1R)-1-naphthalen-1-ylethyl]be.. A 100.0
/99.7 10
/10 R1AB_SARS2 Non-structural protein 3

7jir[1] B TTT
5-amino-2-methyl-N-[(1R)-1-naphthalen-1-ylethyl]be.. A 100.0
/99.7 11
/11 R1A_SARS2 Papain-like protease

7d3i[2] B GQU
(3~{S},3~{a}~{S},6~{a}~{R})-2-[3-[3,5-bis(fluorany.. A 100.0
/100.0 19
/19 R1A_SARS2 3C-like proteinase

7d3i[2] B GQU
(3~{S},3~{a}~{S},6~{a}~{R})-2-[3-[3,5-bis(fluorany.. A 100.0
/100.0 1
/1 R1A_SARS2 3C-like proteinase

7dgg[1] D H63
(2~{S})-~{N}-[(2~{S})-1-oxidanylidene-3-[(3~{S})-2.. B 100.0
/100.0 17
/17 R1A_SARS2 3C-like proteinase

7dgh[2] B H6F
~{N}-[(2~{S})-3-methyl-1-[[(2~{S})-4-methyl-1-oxid.. A 100.0
/100.0 23
/23 R1A_SARS2 3C-like proteinase

7dgh[2] B H6F
~{N}-[(2~{S})-3-methyl-1-[[(2~{S})-4-methyl-1-oxid.. A 100.0
/100.0 1
/1 R1A_SARS2 3C-like proteinase

7dgi[2] C H6L
~{N}-[(2~{S})-3-methyl-1-[[(2~{S})-4-methyl-1-oxid.. A 100.0
/100.0 20
/20 R1A_SARS2 3C-like proteinase

7dgi[1] D H6L
~{N}-[(2~{S})-3-methyl-1-[[(2~{S})-4-methyl-1-oxid.. A 100.0
/100.0 1
/1 R1A_SARS2 3C-like proteinase

7dpu[1] D HER
7-methoxy-3,5-bis(oxidanyl)-2-[3,4,5-tris(oxidanyl.. B 100.0
/100.0 16
/16 R1A_SARS2 3C-like proteinase

7e19[2] B HUO
(phenylmethyl) N-[(2S)-1-[[(2S)-1-[[(2S)-1-(1,3-be.. A 100.0
/100.0 21
/21 R1AB_SARS2 3C-like proteinase

7e6k[2] B HYR
N-(2-phenoxyethyl)methanethioamide[12 atoms] A 100.0
/100.0 6
/6 R1AB_SARS2 3C-like proteinase

7e6k[2] C HYR
N-(2-phenoxyethyl)methanethioamide[12 atoms] A 100.0
/100.0 11
/11 R1AB_SARS2 3C-like proteinase

7e6k[2] D HYR
N-(2-phenoxyethyl)methanethioamide[12 atoms] A 100.0
/100.0 5
/5 R1AB_SARS2 3C-like proteinase

7en8[1] C J7R
~{N}-[(1~{S},2~{R})-2-[[4-bromanyl-2-(methylcarbam.. A 100.0
/100.0 17
/17 R1A_SARS2 3C-like proteinase

7en8[1] D J7R
~{N}-[(1~{S},2~{R})-2-[[4-bromanyl-2-(methylcarbam.. A 100.0
/100.0 1
/1 R1A_SARS2 3C-like proteinase

7en9[2] B J7O
5-bromanyl-~{N}-methyl-3-nitro-2-[(4~{R},5~{S})-2-.. A 100.0
/100.0 17
/17 R1A_SARS2 3C-like proteinase

7faz[1] E 2RI
(2~{R})-~{N}-dibenzofuran-3-yl-~{N}-[(1~{R})-2-[[(.. B 100.0
/100.0 17
/17 R1A_SARS2 3C-like proteinase

7jq2[2] B VHM
N-[(benzyloxy)carbonyl]-L-valyl-3-cyclohexyl-N-{(2.. A 100.0
/100.0 21
/21 R1AB_SARS2 3C-like proteinase

7jq2[2] B VHM
N-[(benzyloxy)carbonyl]-L-valyl-3-cyclohexyl-N-{(2.. A 100.0
/100.0 1
/1 R1AB_SARS2 3C-like proteinase

7jt7[6] B TG3
ethyl (4R)-4-[[(2S)-4-methyl-2-[[(2S,3R)-3-[(2-met.. A 100.0
/100.0 20
/20 R1AB_SARS2 3C-like proteinase

7jw8[2] F BTB
2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PR.. A 100.0
/100.0 5
/5 R1AB_SARS2 3C-like proteinase

7kok[2] B Y96
5-[(E)-(hydroxyimino)methyl]-2-methyl-N-[(1R)-1-(n.. A 100.0
/99.7 10
/10 R1A_SARS2 Papain-like protease

7l0d[2] B 0EN
N-[(1R)-2-(tert-butylamino)-2-oxo-1-(pyridin-3-yl).. A 100.0
/100.0 17
/17 R1AB_SARS2 3C-like proteinase

7l11[2] C XF1
2-[3-(3-chloro-5-propoxyphenyl)-2-oxo[2H-[1,3'-bip.. A 100.0
/100.0 20
/20 R1AB_SARS2 3C-like proteinase

7l12[2] B XF4
(5S)-5-{3-[3-(benzyloxy)-5-chlorophenyl]-2-oxo[2H-.. A 100.0
/100.0 20
/20 R1AB_SARS2 3C-like proteinase

7l14[2] C XFD
2-{3-[3-chloro-5-(cyclopropylmethoxy)phenyl]-2-oxo.. A 100.0
/100.0 22
/22 R1AB_SARS2 3C-like proteinase

7l8i[4] C AG7
4-{2-(4-FLUORO-BENZYL)-6-METHYL-5-[(5-METHYL-ISOXA.. A 100.0
/100.0 19
/19 R1AB_SARS2 3C-like proteinase

7l8j[2] B AG7
4-{2-(4-FLUORO-BENZYL)-6-METHYL-5-[(5-METHYL-ISOXA.. A 100.0
/100.0 1
/1 R1AB_SARS2 3C-like proteinase

7lbr[2] F XT7
5-[(azetidin-3-yl)amino]-N-[(1R)-1-{3-[5-({[(1S,3R.. A 100.0
/100.0 11
/11 R1A_SARS2 Non-structural protein 3

7lbs[2] C XR8
5-[(azetidin-3-yl)amino]-2-methyl-N-[(1R)-1-(3-{5-.. A 100.0
/100.0 12
/12 R1A_SARS2 Non-structural protein 3

7lco[2] B XTJ
(3-fluorophenyl)methyl [(2S)-3-cyclopropyl-1-oxo-1.. A 100.0
/100.0 20
/20 R1AB_SARS2 3C-like proteinase

7lco[2] B XTJ
(3-fluorophenyl)methyl [(2S)-3-cyclopropyl-1-oxo-1.. A 100.0
/100.0 1
/1 R1AB_SARS2 3C-like proteinase

7lcr[2] C XTM
N~2~-{[(3-fluorophenyl)methoxy]carbonyl}-N-{(2S)-1.. A 100.0
/100.0 13
/13 R1AB_SARS2 3C-like proteinase

7lcr[1] D XTM
N~2~-{[(3-fluorophenyl)methoxy]carbonyl}-N-{(2S)-1.. A 100.0
/100.0 1
/1 R1AB_SARS2 3C-like proteinase

7lcs[2] B XTP
benzyl [(2S)-3-cyclopropyl-1-({(2S)-1-hydroxy-3-[(.. A 100.0
/100.0 17
/17 R1AB_SARS2 3C-like proteinase

7lcs[2] B XTP
benzyl [(2S)-3-cyclopropyl-1-({(2S)-1-hydroxy-3-[(.. A 100.0
/100.0 1
/1 R1AB_SARS2 3C-like proteinase

7lct[2] B XU4
N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]pro.. A 100.0
/100.0 19
/19 R1AB_SARS2 3C-like proteinase

7ldl[2] C XV4
N-[(2S)-1-({(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin.. A 100.0
/100.0 18
/18 R1AB_SARS2 3C-like proteinase

7llf[2] I Y54
5-[(azetidin-3-yl)amino]-N-[(1R)-1-{3-[5-({[(1R,3S.. A 100.0
/100.0 11
/11 R1A_SARS2 Non-structural protein 3

7llz[2] C Y61
N-[(1R)-1-(3-{5-[(acetylamino)methyl]thiophen-2-yl.. A 100.0
/100.0 11
/11 R1A_SARS2 Non-structural protein 3

7lme[1] C Y6J
~{N}-[4-[2-(benzotriazol-1-yl)ethanoyl-(thiophen-3.. B 100.0
/100.0 1
/1 R1AB_SARS2 3C-like proteinase

7lme[1] D Y6J
~{N}-[4-[2-(benzotriazol-1-yl)ethanoyl-(thiophen-3.. B 100.0
/100.0 18
/18 R1AB_SARS2 3C-like proteinase

7lmf[2] C Y6G
2-(benzotriazol-1-yl)-~{N}-[4-(1~{H}-imidazol-4-yl.. A 100.0
/100.0 17
/17 R1AB_SARS2 3C-like proteinase

7lmf[2] D Y6G
2-(benzotriazol-1-yl)-~{N}-[4-(1~{H}-imidazol-4-yl.. A 100.0
/100.0 1
/1 R1AB_SARS2 3C-like proteinase

7los[2] E Y97
5-(azetidin-3-ylamino)-2-methyl-~{N}-[(1~{R})-1-[3.. A 100.0
/100.0 11
/11 R1A_SARS2 Non-structural protein 3

7ltj[4] B YD1
6-[4-(3,4-dichlorophenyl)piperazin-1-yl]carbonyl-1.. A 100.0
/100.0 16
/16 R1AB_SARS2 3C-like proteinase

7n8c[2] B YD1
6-[4-(3,4-dichlorophenyl)piperazin-1-yl]carbonyl-1.. A 100.0
/100.0 1
/1 R1AB_SARS2 3C-like proteinase

7ltn[2] B YCV
2-[4-(1~{H}-indazol-4-yl)-2-methanoyl-6-methoxy-ph.. A 100.0
/100.0 13
/13 R1AB_SARS2 3C-like proteinase

7ltn[2] B YCV
2-[4-(1~{H}-indazol-4-yl)-2-methanoyl-6-methoxy-ph.. A 100.0
/100.0 1
/1 R1AB_SARS2 3C-like proteinase

7m8y[2] B YTM
5-{3-[3-chloro-5-(2-phenylethoxy)phenyl]-2-oxo-2H-.. A 100.0
/100.0 19
/19 R1AB_SARS2 3C-like proteinase

7mat[1] E H37
D-phenylalanyl-N-[(3S)-6-carbamimidamido-1-chloro-.. B 100.0
/100.0 17
/17 R1AB_SARS2 3C-like proteinase

7mau[1] E YVP
N-{3-[(prop-2-yn-1-yl)oxy]propanoyl}-D-phenylalany.. A 100.0
/100.0 19
/19 R1AB_SARS2 3C-like proteinase

7mav[2] C YVY
N-{3-[(prop-2-yn-1-yl)oxy]propanoyl}-D-phenylalany.. A 100.0
/100.0 15
/15 R1AB_SARS2 3C-like proteinase

7maw[2] C YVA
ethyl (4R)-4-({3-cyclopropyl-N-[(2E)-3-(4-ethynylp.. A 100.0
/100.0 22
/22 R1AB_SARS2 3C-like proteinase

7maw[2] D YVA
ethyl (4R)-4-({3-cyclopropyl-N-[(2E)-3-(4-ethynylp.. A 100.0
/100.0 1
/1 R1AB_SARS2 3C-like proteinase

7max[2] C YV7
D-phenylalanyl-N-{(2R)-5-ethoxy-5-oxo-1-[(3S)-2-ox.. A 100.0
/100.0 19
/19 R1AB_SARS2 3C-like proteinase

7max[1] D YV7
D-phenylalanyl-N-{(2R)-5-ethoxy-5-oxo-1-[(3S)-2-ox.. A 100.0
/100.0 1
/1 R1AB_SARS2 3C-like proteinase

7maz[2] C YVD
4-fluoro-D-phenylalanyl-N-{(2R)-5-ethoxy-5-oxo-1-[.. A 100.0
/100.0 21
/21 R1AB_SARS2 3C-like proteinase

7maz[2] D YVD
4-fluoro-D-phenylalanyl-N-{(2R)-5-ethoxy-5-oxo-1-[.. A 100.0
/100.0 1
/1 R1AB_SARS2 3C-like proteinase

7mb3[3] G YVV
N-{3-[(prop-2-yn-1-yl)oxy]propanoyl}-D-phenylalany.. A 100.0
/100.0 23
/23 R1AB_SARS2 3C-like proteinase

7mb3[3] J YVV
N-{3-[(prop-2-yn-1-yl)oxy]propanoyl}-D-phenylalany.. A 100.0
/100.0 1
/1 R1AB_SARS2 3C-like proteinase

7mbi[3] F YWJ
4-methoxy-N-[(2S)-4-methyl-1-oxo-1-({(2S)-3-oxo-1-.. B 100.0
/100.0 18
/18 R1AB_SARS2 3C-like proteinase

7mbi[3] H YWJ
4-methoxy-N-[(2S)-4-methyl-1-oxo-1-({(2S)-3-oxo-1-.. B 100.0
/100.0 1
/1 R1AB_SARS2 3C-like proteinase

7mbi[1] G FN7
2,4,6-trimethylpyridine-3-carboxylic acid[12 atoms.. B 100.0
/100.0 3
/3 R1AB_SARS2 3C-like proteinase

7mng[2] B ZL7
(2R,3S)-N-cyclopropyl-3-{[(2R)-3-(cyclopropylmetha.. A 100.0
/100.0 16
/16 R1AB_SARS2 3C-like proteinase

7nbt[2] C U7W
2-(benzotriazol-1-yl)-1-[(4~{S})-4-methyl-6,7-dihy.. A 100.0
/100.0 14
/14 R1AB_SARS2 3C-like proteinase nsp5

7nbt[2] C U7W
2-(benzotriazol-1-yl)-1-[(4~{S})-4-methyl-6,7-dihy.. A 100.0
/100.0 1
/1 R1AB_SARS2 3C-like proteinase nsp5

7neo[2] C U9H
2-cyclobutyl-7-(5-fluoropyridin-3-yl)-5,7-diazaspi.. A 100.0
/100.0 15
/15 R1AB_SARS2 3C-like proteinase nsp5

7neo[2] F U9H
2-cyclobutyl-7-(5-fluoropyridin-3-yl)-5,7-diazaspi.. A 100.0
/100.0 1
/1 R1AB_SARS2 3C-like proteinase nsp5

7nt4[4] C PRL
PROFLAVIN[16 atoms] A 100.0
/100.0 5
/5 R1AB_SARS2 Non-structural protein 3

7nt4[2] E PRL
PROFLAVIN[16 atoms] A 100.0
/100.0 5
/5 R1AB_SARS2 Non-structural protein 3

7ntq[4] B 35J
N-(pyridin-3-ylmethyl)thioformamide[10 atoms] A 100.0
/100.0 12
/12 R1A_SARS2 3C-like proteinase

7ofs[1] E YRL
4-(2-hydroxyethyl)phenol[10 atoms] A 100.0
/100.0 10
/10 R1A_SARS2 Papain-like protease nsp3

7oft[1] K HBA
P-HYDROXYBENZALDEHYDE[9 atoms] A 100.0
/100.0 9
/9 R1A_SARS2 Papain-like protease nsp3

7ofu[1] B HE9
methyl 3,4-bis(oxidanyl)benzoate[12 atoms] A 100.0
/100.0 3
/3 R1A_SARS2 Papain-like protease nsp3

7p2g[1] B 4N0
(4~{R})-~{N}-(4-iodophenyl)-2-oxidanylidene-3,4-di.. A 100.0
/100.0 14
/14 A0A7L9RWV7_SARS2 3C-like proteinase

7pfm[2] C 7IL
N-[(1R)-2-(tert-butylamino)-2-oxidanylidene-1-pyri.. A 100.0
/100.0 15
/15 R1AB_SARS2 Replicase polyprotein 1ab

7q5e[2] C 90I
benzyl (S)-2-(((S)-3,4-dioxo-1-((S)-2-oxopyrrolidi.. A 100.0
/100.0 20
/20 R1AB_SARS2 3C-like proteinase

7q5f[2] C 90X
(S)-1-(2-(2,4-dichlorophenoxy)acetyl)-N-((S)-3,4-d.. A 100.0
/100.0 16
/16 R1AB_SARS2 3C-like proteinase

7qcg[1] B DZI
3,4,5-tris(oxidanyl)-N-[(E)-1H-pyrrol-2-ylmethylid.. A 100.0
/100.0 7
/7 R1A_SARS2 Papain-like protease nsp3

7qch[1] B A5I
N-(3,5-dimetoxy-4-hydroxybenzyliden)thiosemicarbaz.. A 100.0
/100.0 10
/10 R1A_SARS2 Papain-like protease nsp3

7qci[1] B A6Q
N-(3,4-dihydroxybenzylidene)-thiosemicarbazone[16 .. A 100.0
/100.0 10
/10 R1A_SARS2 Papain-like protease nsp3

7qcj[1] F A4O
N-(2,4-dihydroxybenzylidene)-thiosemicarbazone[14 .. A 100.0
/100.0 10
/10 R1A_SARS2 Papain-like protease nsp3

7qck[1] B A7L
N-(2,5-dihydroxybenzylidene)-thiosemicarbazone[16 .. A 100.0
/100.0 9
/9 R1A_SARS2 Papain-like protease nsp3

7qt5[1] B GWS
2-cyclohexyl-~{N}-pyridin-3-yl-ethanamide[16 atoms.. A 100.0
/100.0 12
/12 R1AB_SARS2 3C-like proteinase nsp5

7r7h[2] C 4IT
N-[(2S)-1-({(1E,2S)-1-imino-3-[(3S)-2-oxopyrrolidi.. A 100.0
/100.0 19
/19 R1AB_SARS2 3C-like proteinase

7rbz[2] B 4IJ
5-chloropyridin-3-yl 2,3-dihydro-1H-indole-4-carbo.. A 100.0
/100.0 6
/6 R1AB_SARS2 3C-like proteinase

7rc0[2] B 4I9
5-chloro-4-methylpyridin-3-yl 1H-indole-4-carboxyl.. A 100.0
/100.0 6
/6 R1AB_SARS2 3C-like proteinase

7rfr[1] D 4W8
(1R,2S,5S)-N-{(1S,2S)-1-(1,3-benzothiazol-2-yl)-1-.. B 100.0
/100.0 16
/16 R1AB_SARS2 3C-like proteinase

7rls[2] B 5YN
6-[4-(3,4,5-trichlorophenyl)piperazine-1-carbonyl].. A 100.0
/100.0 18
/18 R1AB_SARS2 3C-like proteinase

7rm2[2] B 5YJ
6-[4-(3,5-dichloro-4-methylphenyl)piperazine-1-car.. A 100.0
/100.0 17
/17 R1AB_SARS2 3C-like proteinase

7rmb[2] B 5Z7
6-[4-(4-bromo-3-chlorophenyl)piperazine-1-carbonyl.. A 100.0
/100.0 16
/16 R1AB_SARS2 3C-like proteinase

7rme[2] B 5Z3
6-{4-[4-chloro-3-(trifluoromethyl)phenyl]piperazin.. A 100.0
/100.0 16
/16 R1AB_SARS2 3C-like proteinase

7rmt[2] B 5ZN
2-chloro-4-[4-(2,6-dioxo-1,2,5,6-tetrahydropyrimid.. A 100.0
/100.0 18
/18 R1AB_SARS2 3C-like proteinase

7rmz[2] B 5ZJ
6-{4-[3-chloro-4-(trifluoromethyl)phenyl]piperazin.. A 100.0
/100.0 17
/17 R1AB_SARS2 3C-like proteinase

7rn1[2] D 5ZF
N-([1,1'-biphenyl]-4-yl)-2-chloro-N-[(1R)-2-oxo-2-.. A 100.0
/100.0 17
/17 R1AB_SARS2 3C-like proteinase

7rn4[2] B H69
6-[4-(3,4-dichlorophenyl)piperidine-1-carbonyl]pyr.. A 100.0
/100.0 16
/16 R1AB_SARS2 3C-like proteinase

7rnh[2] B 5ZW
6-[4-(4-chlorophenyl)piperazine-1-carbonyl]pyrimid.. A 100.0
/100.0 13
/13 R1AB_SARS2 3C-like proteinase

7rnk[2] B 5ZT
6-{4-[3-chloro-4-(hydroxymethyl)phenyl]piperazine-.. A 100.0
/100.0 17
/17 R1AB_SARS2 3C-like proteinase

7s3k[2] B Z26
2-(5-chloro-2-methoxyphenyl)-N-(isoquinolin-4-yl)a.. A 100.0
/100.0 14
/14 R1AB_SARS2 3C-like proteinase

7s3k[2] B Z26
2-(5-chloro-2-methoxyphenyl)-N-(isoquinolin-4-yl)a.. A 100.0
/100.0 1
/1 R1AB_SARS2 3C-like proteinase

7s3s[2] B 860
2-(3-chlorophenyl)-N-(isoquinolin-4-yl)acetamide[2.. A 100.0
/100.0 14
/14 R1AB_SARS2 3C-like proteinase

7s3s[2] B 860
2-(3-chlorophenyl)-N-(isoquinolin-4-yl)acetamide[2.. A 100.0
/100.0 1
/1 R1AB_SARS2 3C-like proteinase

7s4b[2] B 87H
(2R)-2-(3-fluorophenyl)-N-(isoquinolin-4-yl)propan.. A 100.0
/100.0 14
/14 R1AB_SARS2 3C-like proteinase

7s4b[2] B 87H
(2R)-2-(3-fluorophenyl)-N-(isoquinolin-4-yl)propan.. A 100.0
/100.0 1
/1 R1AB_SARS2 3C-like proteinase

7sdr[3] D JW9
4-({methyl[(1R)-1-(naphthalen-1-yl)ethyl]amino}met.. A 100.0
/100.0 12
/12 R1A_SARS2 Non-structural protein 3

7set[2] B I70
(1R,2S,5S)-N-{(2S,3R)-4-amino-3-hydroxy-4-oxo-1-[(.. A 100.0
/100.0 21
/21 R1AB_SARS2 3C-like proteinase

7sf1[2] B 8ZI
(1R,2S,5S)-N-{(2S,3R)-4-amino-3-hydroxy-4-oxo-1-[(.. A 100.0
/100.0 21
/21 R1AB_SARS2 3C-like proteinase

7sf3[2] B 90H
(1R,2S,5S)-N-{(2S,3R)-3-hydroxy-4-(methylamino)-4-.. A 100.0
/100.0 21
/21 R1AB_SARS2 3C-like proteinase

7sfh[2] B 91I
(1R,2S,5S)-N-{(2S,3R)-4-amino-3-hydroxy-4-oxo-1-[(.. A 100.0
/100.0 20
/20 R1AB_SARS2 3C-like proteinase

7sfi[2] B 91Z
(1R,2S,5S)-N-{(2S,3R)-4-amino-3-hydroxy-4-oxo-1-[(.. A 100.0
/100.0 19
/19 R1AB_SARS2 3C-like proteinase

7sgh[3] F 99W
(S)-N-((S)-1-imino-3-((S)-2-oxopyrrolidin-3-yl)pro.. B 100.0
/100.0 19
/19 R1AB_SARS2 3C-like proteinase

7sgw[1] B L30
N-(naphthalen-1-yl)pyridine-3-carboxamide[19 atoms.. A 100.0
/100.0 9
/9 R1A_SARS2 Non-structural protein 3

7tdu[2] B I1W
(1R,2S,5S)-N-{(1S,2S)-1-(1,3-benzothiazol-2-yl)-1-.. A 100.0
/100.0 24
/24 R1AB_SARS2 3C-like proteinase

7tdu[2] B I1W
(1R,2S,5S)-N-{(1S,2S)-1-(1,3-benzothiazol-2-yl)-1-.. A 100.0
/100.0 1
/1 R1AB_SARS2 3C-like proteinase

7teh[2] B I1Z
(1R,2S,5S)-3-[N-(tert-butylcarbamoyl)-3-methyl-L-v.. A 100.0
/100.0 20
/20 R1AB_SARS2 3C-like proteinase

7tfr[2] B NB2
(1R,2S,5S)-N-{(1Z,2S)-1-imino-3-[(3S)-2-oxopyrroli.. A 100.0
/100.0 18
/18 R1AB_SARS2 3C-like proteinase

7tuu[2] B U88
5-nitro-1,3-thiazole[8 atoms] A 100.0
/100.0 5
/5 R1A_SARS2 3C-like proteinase nsp5

7tuu[2] C U88
5-nitro-1,3-thiazole[8 atoms] A 100.0
/100.0 3
/3 R1A_SARS2 3C-like proteinase nsp5

7tuu[2] D U88
5-nitro-1,3-thiazole[8 atoms] A 100.0
/100.0 4
/4 R1A_SARS2 3C-like proteinase nsp5

7tuu[2] D U88
5-nitro-1,3-thiazole[8 atoms] A 100.0
/100.0 1
/1 R1A_SARS2 3C-like proteinase nsp5

7u92[2] B M0C
(1R,2S,5S)-N-{(2S,3R)-4-(azetidin-1-yl)-3-hydroxy-.. A 100.0
/100.0 23
/23 R1AB_SARS2 3C-like proteinase

7ur9[2] C O5F
(2P)-2-(isoquinolin-4-yl)-1-[4-(methylamino)-4-oxo.. A 100.0
/100.0 19
/19 R1AB_SARS2 3C-like proteinase nsp5

7urb[2] B O5O
(2P)-2-(isoquinolin-4-yl)-1-[(1s,3R)-3-(methylcarb.. A 100.0
/100.0 19
/19 R1AB_SARS2 3C-like proteinase

7v1t[1] B 5IL
5,8-bis(oxidanylidene)-7-[(2-piperazin-1-ylphenyl).. A 100.0
/100.0 15
/15 R1A_SARS2 3C-like proteinase

7wo1[2] B 3XI
N-[(2S)-3-methyl-1-[[(2S)-4-methyl-1-oxidanylidene.. A 100.0
/100.0 19
/19 R1A_SARS2 3C-like proteinase

7wo1[2] B 3XI
N-[(2S)-3-methyl-1-[[(2S)-4-methyl-1-oxidanylidene.. A 100.0
/100.0 1
/1 R1A_SARS2 3C-like proteinase

7wym[2] B G7L
N-methyl-N-[[4-(trifluoromethyl)-1,3-thiazol-2-yl].. A 100.0
/100.0 11
/11 R1A_SARS2 3C-like proteinase nsp5

7wyp[1] D G7O
N-(1,3-benzothiazol-2-ylmethyl)-N-cyclopropyl-prop.. B 100.0
/100.0 9
/9 R1A_SARS2 3C-like proteinase

7xar[2] H BOV
4-fluoranyl-~{N}-[(2~{S})-1-[2-(2-fluoranylethanoy.. A 100.0
/100.0 16
/16 R1A_SARS2 3C-like proteinase

7z59[2] B IFO
(3S)-4-[[2,4-bis(fluoranyl)phenyl]methoxy]-2-methy.. A 100.0
/100.0 15
/15 R1AB_SARS2 3C-like proteinase nsp5

7z59[2] B IFO
(3S)-4-[[2,4-bis(fluoranyl)phenyl]methoxy]-2-methy.. A 100.0
/100.0 1
/1 R1AB_SARS2 3C-like proteinase nsp5

7zqv[2] C XNV
ethyl (4R)-4-({(2S)-2-[3-{[(5-methyl-1,2-oxazol-3-.. A 100.0
/100.0 21
/21 R1AB_SARS2 3C-like proteinase nsp5

7zqv[2] D XNV
ethyl (4R)-4-({(2S)-2-[3-{[(5-methyl-1,2-oxazol-3-.. A 100.0
/100.0 1
/1 R1AB_SARS2 3C-like proteinase nsp5

8a4q[2] B V9R
~{tert}-butyl ~{N}-[1-[(2~{R})-3-cyclopropyl-1-oxi.. A 100.0
/100.0 12
/12 R1AB_SARS2 3C-like proteinase nsp5

8a4q[2] B V9R
~{tert}-butyl ~{N}-[1-[(2~{R})-3-cyclopropyl-1-oxi.. A 100.0
/100.0 1
/1 R1AB_SARS2 3C-like proteinase nsp5

8a4t[1] C O6K
~{tert}-butyl ~{N}-[1-[(2~{S})-3-cyclopropyl-1-oxi.. A 100.0
/100.0 16
/16 R1AB_SARS2 3C-like proteinase nsp5

8aiq[2] C MXU
~{tert}-butyl ~{N}-[1-[(2~{S})-1-[[(2~{S},3~{R})-4.. A 100.0
/100.0 18
/18 R1AB_SARS2 Replicase polyprotein 1ab

8aiq[1] E MXU
~{tert}-butyl ~{N}-[1-[(2~{S})-1-[[(2~{S},3~{R})-4.. A 100.0
/100.0 1
/1 R1AB_SARS2 Replicase polyprotein 1ab

8aiu[1] C M9X
tert-butyl N-[1-[(2S)-3-cyclopropyl-1-[[(2S,3R)-4-.. A 100.0
/100.0 20
/20 R1AB_SARS2 3C-like proteinase nsp5

8aiu[1] E M9X
tert-butyl N-[1-[(2S)-3-cyclopropyl-1-[[(2S,3R)-4-.. A 100.0
/100.0 1
/1 R1AB_SARS2 3C-like proteinase nsp5

8aiv[2] C MFL
tert-butyl N-[1-[(2S)-3-cyclopropyl-1-[[(2S,3R)-4-.. A 100.0
/100.0 18
/18 R1AB_SARS2 3C-like proteinase nsp5

8aiv[2] E MFL
tert-butyl N-[1-[(2S)-3-cyclopropyl-1-[[(2S,3R)-4-.. A 100.0
/100.0 1
/1 R1AB_SARS2 3C-like proteinase nsp5

8aiz[1] B MIJ
(2~{R},3~{S})-3-[[(2~{S})-3-cyclopropyl-2-[2-oxida.. A 100.0
/100.0 18
/18 R1AB_SARS2 Replicase polyprotein 1ab

8b2t[4] B OW1
Nirmatrelvir (reacted form)[35 atoms] A 100.0
/100.0 20
/20 R1AB_SARS2 3C-like proteinase nsp5

8b56[1] D OZI
(2~{S})-4-(2-chloranylethanoyl)-1-(3,4-dichlorophe.. B 100.0
/100.0 14
/14 R1AB_SARS2 3C-like proteinase nsp5

8cyu[4] E P5X
N-[(4-chlorothiophen-2-yl)methyl]-N-[4-(dimethylam.. A 100.0
/100.0 18
/18 R1AB_SARS2 3C-like proteinase

8cyz[4] E P6I
N-[(4-chlorothiophen-2-yl)methyl]-2-(isoquinolin-4.. A 100.0
/100.0 16
/16 R1AB_SARS2 3C-like proteinase

8cyz[3] G P6I
N-[(4-chlorothiophen-2-yl)methyl]-2-(isoquinolin-4.. A 100.0
/100.0 1
/1 R1AB_SARS2 3C-like proteinase

8cz4[4] E P6R
N-(4-tert-butylphenyl)-N-[(4-chlorothiophen-2-yl)m.. A 100.0
/100.0 19
/19 R1AB_SARS2 3C-like proteinase

8cz4[3] G P6R
N-(4-tert-butylphenyl)-N-[(4-chlorothiophen-2-yl)m.. A 100.0
/100.0 1
/1 R1AB_SARS2 3C-like proteinase

8cz7[4] E P7L
N-[(4-chlorothiophen-2-yl)methyl]-2-(isoquinolin-4.. A 100.0
/100.0 17
/17 R1AB_SARS2 3C-like proteinase

8d4p[2] B QAO
2-chloro-N-[(1R)-2-{[2-(3-fluorophenyl)ethyl]amino.. A 100.0
/100.0 19
/19 R1AB_SARS2 3C-like proteinase

8dl9[2] B T4V
1-{4-[(naphthalen-1-yl)methyl]piperazin-1-yl}ethan.. A 100.0
/100.0 11
/11 R1AB_SARS2 3C-like proteinase

8dlb[2] B SRU
1-[(5S)-5-(3,4-dimethoxyphenyl)-3-phenyl-4,5-dihyd.. A 100.0
/100.0 11
/11 R1AB_SARS2 3C-like proteinase

8dmd[2] B SVL
1-[(3R)-4-[(3-chlorophenyl)methyl]-3-(2-methylprop.. A 100.0
/100.0 10
/10 R1AB_SARS2 3C-like proteinase

8dsu[1] H V2M
N-[(2S)-1-({(2S,3S)-3,4-dihydroxy-1-[(3S)-2-oxopyr.. B 100.0
/100.0 18
/18 R1AB_SARS2 3C-like proteinase nsp5

8eua[1] B WUK
methyl 4-{2-[3-(2-{[(1R)-1-(naphthalen-1-yl)ethyl].. A 100.0
/100.0 18
/18 R1AB_SARS2 Papain-like protease nsp3

8fy7[1] D YFK
4-methoxy-N-[(2S)-4-methyl-1-oxo-1-({(2S)-1-[(3S)-.. B 100.0
/100.0 18
/18 R1AB_SARS2 3C-like proteinase nsp5

8g62[3] E YOO
3-methoxy-5-(1-methylpiperidin-4-yl)-N-[4-(pyrroli.. A 100.0
/100.0 10
/10 R1A_SARS2 Non-structural protein 3

8g62[1] F YOO
3-methoxy-5-(1-methylpiperidin-4-yl)-N-[4-(pyrroli.. A 100.0
/100.0 10
/10 R1A_SARS2 Non-structural protein 3

8g62[2] M YOO
3-methoxy-5-(1-methylpiperidin-4-yl)-N-[4-(pyrroli.. A 100.0
/100.0 4
/4 R1A_SARS2 Non-structural protein 3

8okk[1] O 83F
tert-butyl-N-[(2S)-3-methyl-1-[(2S,4S)-4-methyl-2-.. B 100.0
/100.0 17
/17 R1AB_SARS2 3C-like proteinase nsp5

8okl[1] I 83N
tert-butyl-N-[(2S)-1-[(2S,4S)-4-methoxy-2-[[(2S)-1.. B 100.0
/100.0 17
/17 R1AB_SARS2 3C-like proteinase nsp5

8okm[1] J 84C
tert-butyl-N-[(2S)-1-[(3S,3aS,6aR)-3-[[(2S)-1-oxid.. B 100.0
/100.0 16
/16 R1AB_SARS2 3C-like proteinase nsp5

8okn[1] H 83W
tert-butyl-N-[(2S,3R)-3-[(2-methylpropan-2-yl)oxy].. B 100.0
/100.0 18
/18 R1AB_SARS2 3C-like proteinase nsp5

8sk4[2] B I3R
2-chloro-1-[(5R)-3-phenyl-5-(quinoxalin-5-yl)-4,5-.. A 100.0
/100.0 13
/13 R1AB_SARS2 3C-like proteinase nsp5

8skh[2] B A1W
2-chloro-1-[(4R,5R)-3,4,5-triphenyl-4,5-dihydro-1H.. A 100.0
/100.0 16
/16 R1AB_SARS2 3C-like proteinase nsp5

8sty[2] B WGE
benzyl (3S)-3-({(2S)-1-hydroxy-3-[(3S)-2-oxopyrrol.. A 100.0
/100.0 16
/16 R1AB_SARS2 3C-like proteinase nsp5

8sxr[1] D WZK
N-[(4-chlorothiophen-2-yl)methyl]-N-[4-(dimethylam.. B 100.0
/100.0 18
/18 R1AB_SARS2 3C-like proteinase nsp5

8tbe[1] C ZQB
Pomotrelvir bound form[32 atoms] A 100.0
/100.0 20
/20 R1AB_SARS2 3C-like proteinase nsp5

8tbe[1] D ZQB
Pomotrelvir bound form[32 atoms] A 100.0
/100.0 1
/1 R1AB_SARS2 3C-like proteinase nsp5

7e35[1] D GYX
N-[(3-acetamidophenyl)methyl]-1-[(1R)-1-naphthalen.. B 100.0
/99.7 2
/2 R1AB_SARS2 Non-structural protein 3

7e35[1] F GYX
N-[(3-acetamidophenyl)methyl]-1-[(1R)-1-naphthalen.. B 100.0
/99.7 10
/10 R1AB_SARS2 Non-structural protein 3

7jit[1] B Y95
5-[(carbamoylcarbamoyl)amino]-2-methyl-N-[(1R)-1-(.. A 100.0
/99.7 11
/11 R1A_SARS2 Papain-like protease

7koj[1] B Y94
2-methyl-N-[(1R)-1-(naphthalen-1-yl)ethyl]-5-{[(pr.. A 100.0
/99.7 11
/11 R1A_SARS2 Papain-like protease

7sgu[1] B 9EI
5-amino-N-(naphthalen-1-yl)pyridine-3-carboxamide[.. A 100.0
/99.7 8
/8 R1A_SARS2 Papain-like protease

7bfb[1] L 9JT
N-phenyl-2-selanylbenzamide[7 atoms] B 100.0
/100.0 3
/3 R1AB_SARS2 Main Protease

7bfb[1] O 9JT
N-phenyl-2-selanylbenzamide[7 atoms] B 100.0
/100.0 4
/4 R1AB_SARS2 Main Protease

7m1y[2] C 9JT
N-phenyl-2-selanylbenzamide[16 atoms] A 100.0
/99.7 7
/7 R1A_SARS2 Papain-like protease

7d7k[4] D CFF
CAFFEINE[14 atoms] A 100.0
/99.7 4
/4 R1AB_SARS2 Non-structural protein 3

7d7l[2] E GXU
1-(2-methoxyethyl)-2-methyl-3-(pyrazin-2-ylmethyl).. A 100.0
/99.7 9
/9 R1AB_SARS2 Non-structural protein 3

7d7l[2] F GXU
1-(2-methoxyethyl)-2-methyl-3-(pyrazin-2-ylmethyl).. A 100.0
/99.7 4
/4 R1AB_SARS2 Non-structural protein 3

7d7l[1] R GXU
1-(2-methoxyethyl)-2-methyl-3-(pyrazin-2-ylmethyl).. B 100.0
/99.7 4
/4 R1AB_SARS2 Non-structural protein 3

7jiv[1] B VBY
5-(acryloylamino)-2-methyl-N-[(1R)-1-(naphthalen-1.. A 100.0
/99.7 11
/11 R1A_SARS2 Papain-like protease

7rzc[6] D JWX
(1R)-N-[(1H-indol-3-yl)methyl]-N-methyl-1-(naphtha.. A 100.0
/100.0 10
/10 R1A_SARS2 Non-structural protein 3

7mpb[1] E ASC
ASCORBIC ACID[12 atoms] B 100.0
/99.7 10
/10 R1AB_SARS2 3C-like proteinase

7jn2[2] B Y41
3-amino-2-methyl-N-[(1R)-1-(naphthalen-1-yl)ethyl].. A 100.0
/100.0 9
/9 R1A_SARS2 Papain-like protease

7aol[2] D RQH
(1~{S})-1-(4-chloranylphenoxy)-1-imidazol-1-yl-3,3.. A 100.0
/99.7 5
/5 R1AB_SARS2 3C-like proteinase

7b83[2] B PK8
9-oxa-7-thia-1-azonia-8$l^{2}-zincabicyclo[4.3.0]n.. A 100.0
/99.7 6
/6 R1AB_SARS2 3C-like proteinase

7rfs[18] B 4WI
(1R,2S,5S)-N-{(1E,2S)-1-imino-3-[(3S)-2-oxopyrroli.. A 100.0
/100.0 21
/21 R1AB_SARS2 3C-like proteinase

8dz6[1] C 4WI
(1R,2S,5S)-N-{(1E,2S)-1-imino-3-[(3S)-2-oxopyrroli.. B 100.0
/99.7 1
/1 R1AB_SARS2 3C-like proteinase nsp5

7rvm[2] B 7V2
N-[(benzyloxy)carbonyl]-L-valyl-N-{(2S)-1-hydroxy-.. A 100.0
/99.7 18
/18 R1AB_SARS2 3C-like proteinase

7rvo[2] C 7VI
N-[(benzyloxy)carbonyl]-L-valyl-3-cyclopropyl-N-{(.. A 100.0
/99.7 19
/19 R1AB_SARS2 3C-like proteinase

7rvp[2] C 7VQ
N-[(benzyloxy)carbonyl]-L-valyl-3-furan-2-yl-N-{(2.. A 100.0
/99.7 20
/20 R1AB_SARS2 3C-like proteinase

7rvr[2] B 7W5
N-[(benzyloxy)carbonyl]-3-methyl-L-valyl-N-{(2S)-1.. A 100.0
/99.7 21
/21 R1AB_SARS2 3C-like proteinase

7rvw[2] B 7YB
benzyl (1-{[(2S)-3-cyclohexyl-1-({(2S)-1-hydroxy-3.. A 100.0
/99.7 18
/18 R1AB_SARS2 3C-like proteinase

7rvy[2] B 7YQ
O-tert-butyl-N-{[(3-chlorophenyl)methoxy]carbonyl}.. A 100.0
/99.7 21
/21 R1AB_SARS2 3C-like proteinase

7rw0[2] B 7YZ
N-{[(3-chlorophenyl)methoxy]carbonyl}-L-valyl-3-cy.. A 100.0
/99.7 20
/20 R1AB_SARS2 3C-like proteinase

7s6y[2] B 8GW
(1R,2S,5S)-3-[N-(tert-butylcarbamoyl)-3-methyl-L-v.. A 100.0
/99.7 19
/19 R1AB_SARS2 3C-like proteinase

7s6z[2] B I71
(1R,2S,5S)-3-[N-(tert-butylcarbamoyl)-3-methyl-L-v.. A 100.0
/99.7 19
/19 R1AB_SARS2 3C-like proteinase

7s71[2] B 8H9
(1R,2S,5S)-3-[N-(tert-butylcarbamoyl)-3-methyl-L-v.. A 100.0
/99.7 18
/18 R1AB_SARS2 3C-like proteinase

7s73[2] B I69
(6S)-5-{(2S)-2-[(tert-butylcarbamoyl)amino]-3,3-di.. A 100.0
/99.7 19
/19 R1AB_SARS2 3C-like proteinase

7s75[2] B 8I7
(1R,2S,5S)-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolid.. A 100.0
/99.7 18
/18 R1AB_SARS2 3C-like proteinase

7sd9[2] B 8T6
N-[(2S)-1-({(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin.. A 100.0
/99.7 14
/14 R1AB_SARS2 3C-like proteinase

7sda[2] B 8UI
N-[(2S)-1-({(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin.. A 100.0
/99.7 17
/17 R1AB_SARS2 3C-like proteinase

7sdc[2] B I80
(1R,2S,5S)-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolid.. A 100.0
/99.7 19
/19 R1AB_SARS2 3C-like proteinase

8dz0[2] E 7YY
6-[(6-chloranyl-2-methyl-indazol-5-yl)amino]-3-[(1.. B 100.0
/100.0 1
/1 R1AB_SARS2 3C-like proteinase nsp5

8dz0[2] G 7YY
6-[(6-chloranyl-2-methyl-indazol-5-yl)amino]-3-[(1.. B 100.0
/100.0 18
/18 R1AB_SARS2 3C-like proteinase nsp5

6wtj[10] B K36
(1S,2S)-2-({N-[(benzyloxy)carbonyl]-L-leucyl}amino.. A 100.0
/100.0 13
/13 R1AB_SARS2 3C-like proteinase

6wtj[4] B K36
(1S,2S)-2-({N-[(benzyloxy)carbonyl]-L-leucyl}amino.. A 100.0
/100.0 1
/1 R1AB_SARS2 3C-like proteinase

7ybg[1] C MLA
MALONIC ACID[7 atoms] A 83.3
/99.1 6
/6 R1A_SARS2 Papain-like protease nsp3

3.a³:asym_id for the contact molecule. 4.a⁴:asym_id for the template homologue. 5.identity[%]⁵:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon⁶:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.

METAL

4405 pdb_id contact mol homologue

a³ description a⁴ identity[%]⁵ Ncon⁶ description

6w9c[87] D ZN
ZINC ION[1 atoms] A 100.0
/100.0 4
/4 R1A_SARS2 Non-structural protein 3

6w9c[3] H ZN
ZINC ION[1 atoms] A 100.0
/100.0 2
/2 R1A_SARS2 Non-structural protein 3

7cjm[1] C ZN
ZINC ION[1 atoms] A 100.0
/99.7 1
/1 R1AB_SARS2 Non-structural protein 3

7cjm[1] D ZN
ZINC ION[1 atoms] A 100.0
/99.7 2
/2 R1AB_SARS2 Non-structural protein 3

7d6h[5] B ZN
ZINC ION[1 atoms] A 100.0
/99.7 4
/4 R1A_SARS2 Papain-like protease

7fac[1] B ZN
ZINC ION[1 atoms] A 100.0
/65.3 4
/4 R1A_SARS Non-structural protein 2

7fac[1] C ZN
ZINC ION[1 atoms] A 100.0
/65.3 7
/7 R1A_SARS Non-structural protein 2

7jir[7] D ZN
ZINC ION[1 atoms] A 100.0
/99.7 3
/3 R1A_SARS2 Papain-like protease

7jir[8] E ZN
ZINC ION[1 atoms] A 100.0
/99.7 2
/2 R1A_SARS2 Papain-like protease

7jir[8] F ZN
ZINC ION[1 atoms] A 100.0
/99.7 2
/2 R1A_SARS2 Papain-like protease

7jn2[2] G ZN
ZINC ION[1 atoms] A 100.0
/100.0 2
/2 R1A_SARS2 Papain-like protease

7k3t[30] M ZN
ZINC ION[1 atoms] A 100.0
/100.0 2
/2 R1AB_SARS2 3C-like proteinase

7msw[2] B ZN
ZINC ION[1 atoms] A 100.0
/100.0 5
/5 R1AB_SARS2 Non-structural protein 2

7msw[2] D ZN
ZINC ION[1 atoms] A 100.0
/100.0 4
/4 R1AB_SARS2 Non-structural protein 2

8eua[1] D ZN
ZINC ION[1 atoms] A 100.0
/100.0 1
/1 R1AB_SARS2 Papain-like protease nsp3

8eua[1] E ZN
ZINC ION[1 atoms] A 100.0
/100.0 1
/1 R1AB_SARS2 Papain-like protease nsp3

6w9c[102] E CL
CHLORIDE ION[1 atoms] A 100.0
/100.0 7
/7 R1A_SARS2 Non-structural protein 3

6wrh[39] F CL
CHLORIDE ION[1 atoms] A 100.0
/99.7 3
/3 R1AB_SARS2 Non-structural protein 3

6wrh[12] G CL
CHLORIDE ION[1 atoms] A 100.0
/99.7 6
/6 R1AB_SARS2 Non-structural protein 3

6yvf[2] C CL
CHLORIDE ION[1 atoms] A 100.0
/100.0 5
/5 R1AB_SARS2 3C-like proteinase

6yvf[2] D CL
CHLORIDE ION[1 atoms] A 100.0
/100.0 1
/1 R1AB_SARS2 3C-like proteinase

6yvf[3] D CL
CHLORIDE ION[1 atoms] A 100.0
/100.0 4
/4 R1AB_SARS2 3C-like proteinase

6z2e[3] D CL
CHLORIDE ION[1 atoms] A 100.0
/100.0 5
/5 R1AB_SARS2 3C-like proteinase

7af0[2] D CL
CHLORIDE ION[1 atoms] A 100.0
/100.0 2
/2 R1AB_SARS2 3C-like proteinase

7aga[5] D CL
CHLORIDE ION[1 atoms] A 100.0
/100.0 3
/3 R1AB_SARS2 3C-like proteinase

7avd[4] C CL
CHLORIDE ION[1 atoms] A 100.0
/100.0 7
/7 R1AB_SARS2 3C-like proteinase

7bb2[5] L CL
CHLORIDE ION[1 atoms] A 100.0
/100.0 3
/3 R1AB_SARS2 3C-like proteinase

7be7[3] T CL
CHLORIDE ION[1 atoms] B 100.0
/100.0 2
/2 R1AB_SARS2 3C-like proteinase

7jir[17] H CL
CHLORIDE ION[1 atoms] A 100.0
/99.7 4
/4 R1A_SARS2 Papain-like protease

7jir[4] J CL
CHLORIDE ION[1 atoms] A 100.0
/99.7 3
/3 R1A_SARS2 Papain-like protease

7jn2[5] K CL
CHLORIDE ION[1 atoms] A 100.0
/100.0 4
/4 R1A_SARS2 Papain-like protease

7los[3] M CL
CHLORIDE ION[1 atoms] B 100.0
/100.0 1
/1 R1A_SARS2 Non-structural protein 3

7m1y[2] E CL
CHLORIDE ION[1 atoms] A 100.0
/99.7 4
/4 R1A_SARS2 Papain-like protease

7nf5[5] K CL
CHLORIDE ION[1 atoms] A 100.0
/100.0 2
/2 R1AB_SARS2 3C-like proteinase

7nfv[4] F CL
CHLORIDE ION[1 atoms] A 100.0
/100.0 4
/4 R1A_SARS2 Papain-like protease nsp3

7oft[1] E CL
CHLORIDE ION[1 atoms] A 100.0
/100.0 3
/3 R1A_SARS2 Papain-like protease nsp3

7oft[1] H CL
CHLORIDE ION[1 atoms] A 100.0
/100.0 4
/4 R1A_SARS2 Papain-like protease nsp3

7oft[2] I CL
CHLORIDE ION[1 atoms] A 100.0
/100.0 2
/2 R1A_SARS2 Papain-like protease nsp3

7oft[1] J CL
CHLORIDE ION[1 atoms] A 100.0
/100.0 2
/2 R1A_SARS2 Papain-like protease nsp3

7q5e[1] E CL
CHLORIDE ION[1 atoms] A 100.0
/100.0 1
/1 R1AB_SARS2 3C-like proteinase

7qcj[3] L CL
CHLORIDE ION[1 atoms] A 100.0
/100.0 2
/2 R1A_SARS2 Papain-like protease nsp3

7qcj[1] N CL
CHLORIDE ION[1 atoms] A 100.0
/100.0 1
/1 R1A_SARS2 Papain-like protease nsp3

7qcm[1] J CL
CHLORIDE ION[1 atoms] A 100.0
/100.0 2
/2 R1A_SARS2 Papain-like protease nsp3

7sqe[1] S CL
CHLORIDE ION[1 atoms] C 100.0
/99.7 3
/3 R1A_SARS2 Papain-like protease

7xar[1] F CL
CHLORIDE ION[1 atoms] A 100.0
/100.0 1
/1 R1A_SARS2 3C-like proteinase

7xar[1] G CL
CHLORIDE ION[1 atoms] A 100.0
/100.0 2
/2 R1A_SARS2 3C-like proteinase

8cx9[1] W CL
CHLORIDE ION[1 atoms] D 100.0
/100.0 3
/3 R1A_SARS2 Papain-like protease nsp3

6xbi[3] G NA
SODIUM ION[1 atoms] A 100.0
/100.0 3
/3 R1AB_SARS2 3C-like proteinase

6z2e[2] E NA
SODIUM ION[1 atoms] A 100.0
/100.0 4
/4 R1AB_SARS2 3C-like proteinase

7be7[12] S NA
SODIUM ION[1 atoms] B 100.0
/100.0 4
/4 R1AB_SARS2 3C-like proteinase

7cb7[1] C NA
SODIUM ION[1 atoms] B 100.0
/100.0 1
/1 R1AB_SARS2 3C-like proteinase

7jyc[4] G NA
SODIUM ION[1 atoms] A 100.0
/100.0 3
/3 R1AB_SARS2 3C-like proteinase

7m1y[4] P NA
SODIUM ION[1 atoms] A 100.0
/99.7 4
/4 R1A_SARS2 Papain-like protease

7ntq[4] C NA
SODIUM ION[1 atoms] A 100.0
/100.0 5
/5 R1A_SARS2 3C-like proteinase

7ntq[6] D NA
SODIUM ION[1 atoms] A 100.0
/100.0 5
/5 R1A_SARS2 3C-like proteinase

7ntq[2] E NA
SODIUM ION[1 atoms] A 100.0
/100.0 7
/7 R1A_SARS2 3C-like proteinase

7ntt[3] C NA
SODIUM ION[1 atoms] A 100.0
/100.0 6
/6 R1A_SARS2 3C-like proteinase

7ntt[3] C NA
SODIUM ION[1 atoms] B 100.0
/100.0 1
/1 R1A_SARS2 3C-like proteinase

7ntw[4] B NA
SODIUM ION[1 atoms] A 100.0
/100.0 6
/6 R1A_SARS2 3C-like proteinase

7pfl[4] B NA
SODIUM ION[1 atoms] A 100.0
/100.0 2
/2 R1AB_SARS2 Replicase polyprotein 1ab

7phz[1] M NA
SODIUM ION[1 atoms] B 100.0
/100.0 3
/3 R1AB_SARS2 Replicase polyprotein 1ab

7ybg[1] E NA
SODIUM ION[1 atoms] A 66.7
/99.1 3
/3 R1A_SARS2 Papain-like protease nsp3

7ybg[1] F NA
SODIUM ION[1 atoms] A 100.0
/99.1 4
/4 R1A_SARS2 Papain-like protease nsp3

8cx9[2] R NA
SODIUM ION[1 atoms] B 100.0
/100.0 2
/2 R1A_SARS2 Papain-like protease nsp3

6yvf[3] L CA
CALCIUM ION[1 atoms] A 100.0
/100.0 1
/1 R1AB_SARS2 3C-like proteinase

7sfh[4] C CA
CALCIUM ION[1 atoms] A 100.0
/100.0 1
/1 R1AB_SARS2 3C-like proteinase

7oft[1] L K
POTASSIUM ION[1 atoms] A 100.0
/100.0 1
/1 R1A_SARS2 Papain-like protease nsp3

7oft[1] M K
POTASSIUM ION[1 atoms] A 100.0
/100.0 3
/3 R1A_SARS2 Papain-like protease nsp3

7xar[1] C NI
NICKEL (II) ION[1 atoms] A 100.0
/100.0 2
/2 R1A_SARS2 3C-like proteinase

7xar[2] D NI
NICKEL (II) ION[1 atoms] A 100.0
/100.0 1
/1 R1A_SARS2 3C-like proteinase

7xar[2] E NI
NICKEL (II) ION[1 atoms] A 100.0
/100.0 1
/1 R1A_SARS2 3C-like proteinase

7xar[2] J NI
NICKEL (II) ION[1 atoms] A 100.0
/100.0 1
/1 R1A_SARS2 3C-like proteinase

8b56[1] G BR
BROMIDE ION[1 atoms] B 100.0
/100.0 2
/2 R1AB_SARS2 3C-like proteinase nsp5

8cx9[1] N BR
BROMIDE ION[1 atoms] A 100.0
/100.0 3
/3 R1A_SARS2 Papain-like protease nsp3

8cx9[1] P BR
BROMIDE ION[1 atoms] B 100.0
/100.0 3
/3 R1A_SARS2 Papain-like protease nsp3

8cx9[1] Q BR
BROMIDE ION[1 atoms] B 100.0
/100.0 3
/3 R1A_SARS2 Papain-like protease nsp3

8cx9[1] V BR
BROMIDE ION[1 atoms] D 100.0
/100.0 3
/3 R1A_SARS2 Papain-like protease nsp3

8okm[1] H BR
BROMIDE ION[1 atoms] B 100.0
/100.0 3
/3 R1AB_SARS2 3C-like proteinase nsp5

6wuu[1] K MG
MAGNESIUM ION[1 atoms] B 100.0
/98.8 1
/1 R1AB_SARS2 Non-structural protein 3

6wuu[1] M MG
MAGNESIUM ION[1 atoms] C 100.0
/99.7 1
/1 R1AB_SARS2 Non-structural protein 3

6wuu[1] O MG
MAGNESIUM ION[1 atoms] D 100.0
/99.7 5
/5 R1AB_SARS2 Non-structural protein 3

6wuu[1] P MG
MAGNESIUM ION[1 atoms] D 100.0
/99.7 2
/2 R1AB_SARS2 Non-structural protein 3

7m1y[2] G IOD
IODIDE ION[1 atoms] A 100.0
/99.7 3
/3 R1A_SARS2 Papain-like protease

7m1y[2] H IOD
IODIDE ION[1 atoms] A 100.0
/99.7 4
/4 R1A_SARS2 Papain-like protease

7m1y[2] I IOD
IODIDE ION[1 atoms] A 100.0
/99.7 1
/1 R1A_SARS2 Papain-like protease

7m1y[2] J IOD
IODIDE ION[1 atoms] A 100.0
/99.7 4
/4 R1A_SARS2 Papain-like protease

7m1y[2] K IOD
IODIDE ION[1 atoms] A 100.0
/99.7 1
/1 R1A_SARS2 Papain-like protease

7m1y[2] L IOD
IODIDE ION[1 atoms] A 100.0
/99.7 2
/2 R1A_SARS2 Papain-like protease

7m1y[1] Y IOD
IODIDE ION[1 atoms] B 100.0
/99.7 1
/1 R1A_SARS2 Papain-like protease

7jn2[19] M UNX
UNKNOWN ATOM OR ION[1 atoms] A 100.0
/100.0 1
/1 R1A_SARS2 Papain-like protease

7koj[11] M UNX
UNKNOWN ATOM OR ION[1 atoms] A 100.0
/99.7 2
/2 R1A_SARS2 Papain-like protease

3.a³:asym_id for the contact molecule. 4.a⁴:asym_id for the template homologue. 5.identity[%]⁵:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon⁶:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.

HOMO

4405 pdb_id contact mol homologue

a³ description a⁴ identity[%]⁵ Ncon⁶ description

6lu7[588] A R1AB_SARS2 3C-like proteinase[306 aa] A 100.0
/100.0 34
/34 R1AB_SARS2 3C-like proteinase

7e5x[1] C R1AB_SARS2 3C-like proteinase[306 aa] A 100.0
/100.0 18
/18 R1AB_SARS2 3C-like proteinase

7e5x[1] C R1AB_SARS2 3C-like proteinase[306 aa] B 100.0
/100.0 4
/4 R1AB_SARS2 3C-like proteinase

7e5x[1] A R1AB_SARS2 3C-like proteinase[306 aa] C 100.0
/100.0 7
/7 R1AB_SARS2 3C-like proteinase

7e5x[1] B R1AB_SARS2 3C-like proteinase[306 aa] C 100.0
/100.0 5
/5 R1AB_SARS2 3C-like proteinase

7rm2[8] A R1AB_SARS2 3C-like proteinase[306 aa] A 100.0
/100.0 11
/11 R1AB_SARS2 3C-like proteinase

6w9c[11] B R1A_SARS2 Non-structural protein 3[307 aa] A 100.0
/100.0 5
/5 R1A_SARS2 Non-structural protein 3

6xg3[2] A R1AB_SARS2 Non-structural protein 3[313 aa] A 100.0
/99.7 24
/24 R1AB_SARS2 Non-structural protein 3

7cjd[1] B R1AB_SARS2 Non-structural protein 3[297 aa] A 100.0
/99.7 10
/10 R1AB_SARS2 Non-structural protein 3

7cjd[1] D R1AB_SARS2 Non-structural protein 3[310 aa] A 100.0
/99.7 14
/14 R1AB_SARS2 Non-structural protein 3

7e35[1] A R1AB_SARS2 Non-structural protein 3[287 aa] B 100.0
/99.7 21
/21 R1AB_SARS2 Non-structural protein 3

7s82[4] B R1AB_SARS2 3C-like proteinase[11 aa] A 94.7
/99.7 19
/19 R1AB_SARS2 3C-like proteinase

3.a³:asym_id for the contact molecule. 4.a⁴:asym_id for the template homologue. 5.identity[%]⁵:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon⁶:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.

PRECIPITANT

4405 pdb_id contact mol homologue

a³ description a⁴ identity[%]⁵ Ncon⁶ description

6xb0[126] B DMS
DIMETHYL SULFOXIDE[4 atoms] A 100.0
/100.0 4
/4 R1AB_SARS2 3C-like proteinase

6xb0[107] B DMS
DIMETHYL SULFOXIDE[4 atoms] A 100.0
/100.0 2
/2 R1AB_SARS2 3C-like proteinase

6yb7[125] B DMS
DIMETHYL SULFOXIDE[4 atoms] A 100.0
/100.0 3
/3 R1AB_SARS2 3C-like proteinase

6yb7[68] E DMS
DIMETHYL SULFOXIDE[4 atoms] A 100.0
/100.0 8
/8 R1AB_SARS2 3C-like proteinase

6yb7[15] E DMS
DIMETHYL SULFOXIDE[4 atoms] A 100.0
/100.0 1
/1 R1AB_SARS2 3C-like proteinase

6yb7[87] F DMS
DIMETHYL SULFOXIDE[4 atoms] A 100.0
/100.0 7
/7 R1AB_SARS2 3C-like proteinase

6yb7[57] G DMS
DIMETHYL SULFOXIDE[4 atoms] A 100.0
/100.0 2
/2 R1AB_SARS2 3C-like proteinase

6yb7[24] I DMS
DIMETHYL SULFOXIDE[4 atoms] A 100.0
/100.0 3
/3 R1AB_SARS2 3C-like proteinase

7a1u[8] D DMS
DIMETHYL SULFOXIDE[4 atoms] A 100.0
/100.0 4
/4 R1AB_SARS2 3C-like proteinase

7abu[4] I DMS
DIMETHYL SULFOXIDE[4 atoms] A 100.0
/100.0 2
/2 R1AB_SARS2 3C-like proteinase

7aga[8] J DMS
DIMETHYL SULFOXIDE[4 atoms] A 100.0
/100.0 4
/4 R1AB_SARS2 3C-like proteinase

7aga[2] K DMS
DIMETHYL SULFOXIDE[4 atoms] A 100.0
/100.0 3
/3 R1AB_SARS2 3C-like proteinase

7amj[4] I DMS
DIMETHYL SULFOXIDE[4 atoms] A 100.0
/100.0 3
/3 R1AB_SARS2 3C-like proteinase

7ax6[2] C DMS
DIMETHYL SULFOXIDE[4 atoms] A 100.0
/100.0 3
/3 R1AB_SARS2 3C-like proteinase

7ax6[2] D DMS
DIMETHYL SULFOXIDE[4 atoms] A 100.0
/100.0 4
/4 R1AB_SARS2 3C-like proteinase

7axm[5] E DMS
DIMETHYL SULFOXIDE[4 atoms] A 100.0
/100.0 1
/1 R1AB_SARS2 3C-like proteinase

7b5z[5] G DMS
DIMETHYL SULFOXIDE[4 atoms] A 100.0
/100.0 5
/5 R1AB_SARS2 3C-like proteinase nsp5

7b5z[2] H DMS
DIMETHYL SULFOXIDE[4 atoms] A 100.0
/100.0 3
/3 R1AB_SARS2 3C-like proteinase nsp5

7buy[4] E DMS
DIMETHYL SULFOXIDE[4 atoms] A 100.0
/100.0 4
/4 R1AB_SARS2 3C-like proteinase

7buy[2] E DMS
DIMETHYL SULFOXIDE[4 atoms] A 100.0
/100.0 2
/2 R1AB_SARS2 3C-like proteinase

7buy[2] F DMS
DIMETHYL SULFOXIDE[4 atoms] A 100.0
/100.0 6
/6 R1AB_SARS2 3C-like proteinase

7cuu[1] C DMS
DIMETHYL SULFOXIDE[4 atoms] A 100.0
/100.0 4
/4 R1AB_SARS2 3C protein

7dvw[2] C DMS
DIMETHYL SULFOXIDE[4 atoms] A 83.3
/99.7 6
/6 R1AB_SARS2 3C-like proteinase

7mhl[2] C DMS
DIMETHYL SULFOXIDE[4 atoms] A 100.0
/100.0 1
/1 R1AB_SARS2 3C-like proteinase

7mhl[3] D DMS
DIMETHYL SULFOXIDE[4 atoms] A 100.0
/100.0 4
/4 R1AB_SARS2 3C-like proteinase

7mhl[2] E DMS
DIMETHYL SULFOXIDE[4 atoms] A 100.0
/100.0 4
/4 R1AB_SARS2 3C-like proteinase

7mhm[2] C DMS
DIMETHYL SULFOXIDE[4 atoms] A 100.0
/100.0 1
/1 R1AB_SARS2 3C-like proteinase

7mhm[2] E DMS
DIMETHYL SULFOXIDE[4 atoms] A 100.0
/100.0 2
/2 R1AB_SARS2 3C-like proteinase

7t70[1] DA DMS
DIMETHYL SULFOXIDE[4 atoms] B 100.0
/99.7 2
/2 R1AB_SARS2 3C-like proteinase

7t70[1] S DMS
DIMETHYL SULFOXIDE[4 atoms] B 100.0
/99.7 2
/2 R1AB_SARS2 3C-like proteinase

7vh8[4] C DMS
DIMETHYL SULFOXIDE[4 atoms] A 100.0
/100.0 3
/3 R1A_SARS2 3C-like proteinase

6xkf[2] C EDO
1,2-ETHANEDIOL[4 atoms] A 80.0
/100.0 5
/5 R1AB_SARS2 3C-like proteinase

6xkf[38] E EDO
1,2-ETHANEDIOL[4 atoms] A 100.0
/100.0 1
/1 R1AB_SARS2 3C-like proteinase

6xkh[2] B EDO
1,2-ETHANEDIOL[4 atoms] A 100.0
/100.0 4
/4 R1AB_SARS2 3C-like proteinase

6xkh[2] C EDO
1,2-ETHANEDIOL[4 atoms] A 100.0
/100.0 3
/3 R1AB_SARS2 3C-like proteinase

7bb2[1] G EDO
1,2-ETHANEDIOL[4 atoms] A 100.0
/100.0 3
/3 R1AB_SARS2 3C-like proteinase

7bb2[2] H EDO
1,2-ETHANEDIOL[4 atoms] A 100.0
/100.0 5
/5 R1AB_SARS2 3C-like proteinase

7bb2[1] J EDO
1,2-ETHANEDIOL[4 atoms] A 100.0
/100.0 3
/3 R1AB_SARS2 3C-like proteinase

7be7[1] F EDO
1,2-ETHANEDIOL[4 atoms] B 100.0
/100.0 1
/1 R1AB_SARS2 3C-like proteinase

7be7[1] M EDO
1,2-ETHANEDIOL[4 atoms] B 100.0
/100.0 1
/1 R1AB_SARS2 3C-like proteinase

7be7[3] P EDO
1,2-ETHANEDIOL[4 atoms] B 100.0
/100.0 4
/4 R1AB_SARS2 3C-like proteinase

7be7[2] Q EDO
1,2-ETHANEDIOL[4 atoms] B 100.0
/100.0 4
/4 R1AB_SARS2 3C-like proteinase

7be7[2] R EDO
1,2-ETHANEDIOL[4 atoms] B 100.0
/100.0 3
/3 R1AB_SARS2 3C-like proteinase

7d7k[7] E EDO
1,2-ETHANEDIOL[4 atoms] A 100.0
/99.7 4
/4 R1AB_SARS2 Non-structural protein 3

7d7k[1] F EDO
1,2-ETHANEDIOL[4 atoms] A 100.0
/99.7 2
/2 R1AB_SARS2 Non-structural protein 3

7d7k[1] I EDO
1,2-ETHANEDIOL[4 atoms] A 100.0
/99.7 2
/2 R1AB_SARS2 Non-structural protein 3

7d7k[1] J EDO
1,2-ETHANEDIOL[4 atoms] A 100.0
/99.7 2
/2 R1AB_SARS2 Non-structural protein 3

7d7k[1] K EDO
1,2-ETHANEDIOL[4 atoms] A 100.0
/99.7 1
/1 R1AB_SARS2 Non-structural protein 3

7d7k[1] Q EDO
1,2-ETHANEDIOL[4 atoms] B 100.0
/99.7 6
/6 R1AB_SARS2 Non-structural protein 3

7d7k[1] R EDO
1,2-ETHANEDIOL[4 atoms] B 100.0
/99.7 3
/3 R1AB_SARS2 Non-structural protein 3

7d7k[1] T EDO
1,2-ETHANEDIOL[4 atoms] B 100.0
/99.7 3
/3 R1AB_SARS2 Non-structural protein 3

7jfq[4] B EDO
1,2-ETHANEDIOL[4 atoms] A 100.0
/100.0 4
/4 R1AB_SARS2 3C-like proteinase

7nf5[2] D EDO
1,2-ETHANEDIOL[4 atoms] A 100.0
/100.0 1
/1 R1AB_SARS2 3C-like proteinase

7nf5[2] E EDO
1,2-ETHANEDIOL[4 atoms] A 100.0
/100.0 5
/5 R1AB_SARS2 3C-like proteinase

7nf5[4] H EDO
1,2-ETHANEDIOL[4 atoms] A 100.0
/100.0 2
/2 R1AB_SARS2 3C-like proteinase

7nt4[13] F EDO
1,2-ETHANEDIOL[4 atoms] A 100.0
/100.0 11
/11 R1AB_SARS2 Non-structural protein 3

7nt4[1] H EDO
1,2-ETHANEDIOL[4 atoms] A 100.0
/100.0 3
/3 R1AB_SARS2 Non-structural protein 3

7nt4[1] I EDO
1,2-ETHANEDIOL[4 atoms] A 100.0
/100.0 6
/6 R1AB_SARS2 Non-structural protein 3

7nt4[1] P EDO
1,2-ETHANEDIOL[4 atoms] B 100.0
/100.0 3
/3 R1AB_SARS2 Non-structural protein 3

7nt4[8] Q EDO
1,2-ETHANEDIOL[4 atoms] B 100.0
/100.0 7
/7 R1AB_SARS2 Non-structural protein 3

7nt4[1] R EDO
1,2-ETHANEDIOL[4 atoms] B 100.0
/100.0 4
/4 R1AB_SARS2 Non-structural protein 3

7phz[1] H EDO
1,2-ETHANEDIOL[4 atoms] B 100.0
/100.0 4
/4 R1AB_SARS2 Replicase polyprotein 1ab

7q5f[1] E EDO
1,2-ETHANEDIOL[4 atoms] A 100.0
/100.0 3
/3 R1AB_SARS2 3C-like proteinase

6xkh[2] D FMT
FORMIC ACID[3 atoms] A 100.0
/100.0 5
/5 R1AB_SARS2 3C-like proteinase

6xkh[2] E FMT
FORMIC ACID[3 atoms] A 100.0
/100.0 3
/3 R1AB_SARS2 3C-like proteinase

6xkh[4] F FMT
FORMIC ACID[3 atoms] A 85.7
/100.0 7
/7 R1AB_SARS2 3C-like proteinase

6xkh[2] G FMT
FORMIC ACID[3 atoms] A 100.0
/100.0 3
/3 R1AB_SARS2 3C-like proteinase

7jfq[2] C FMT
FORMIC ACID[3 atoms] A 100.0
/100.0 7
/7 R1AB_SARS2 3C-like proteinase

7jfq[2] E FMT
FORMIC ACID[3 atoms] A 100.0
/100.0 2
/2 R1AB_SARS2 3C-like proteinase

7m1y[1] M FMT
FORMIC ACID[3 atoms] A 100.0
/99.7 3
/3 R1A_SARS2 Papain-like protease

7m1y[4] N FMT
FORMIC ACID[3 atoms] A 100.0
/99.7 3
/3 R1A_SARS2 Papain-like protease

7m1y[1] O FMT
FORMIC ACID[3 atoms] A 100.0
/99.7 4
/4 R1A_SARS2 Papain-like protease

7m1y[1] BA FMT
FORMIC ACID[3 atoms] B 100.0
/99.7 4
/4 R1A_SARS2 Papain-like protease

7ntq[6] F FMT
FORMIC ACID[3 atoms] A 100.0
/100.0 4
/4 R1A_SARS2 3C-like proteinase

7ntq[4] G FMT
FORMIC ACID[3 atoms] A 100.0
/100.0 3
/3 R1A_SARS2 3C-like proteinase

7ntq[2] H FMT
FORMIC ACID[3 atoms] A 100.0
/100.0 1
/1 R1A_SARS2 3C-like proteinase

7ntq[2] I FMT
FORMIC ACID[3 atoms] A 100.0
/100.0 2
/2 R1A_SARS2 3C-like proteinase

7ntq[2] J FMT
FORMIC ACID[3 atoms] A 100.0
/100.0 3
/3 R1A_SARS2 3C-like proteinase

7ntq[3] K FMT
FORMIC ACID[3 atoms] A 100.0
/100.0 2
/2 R1A_SARS2 3C-like proteinase

7ntw[2] G FMT
FORMIC ACID[3 atoms] A 100.0
/100.0 4
/4 R1A_SARS2 3C-like proteinase

7ntw[2] I FMT
FORMIC ACID[3 atoms] A 100.0
/100.0 1
/1 R1A_SARS2 3C-like proteinase

7ntw[2] J FMT
FORMIC ACID[3 atoms] A 100.0
/100.0 1
/1 R1A_SARS2 3C-like proteinase

7sgu[1] G FMT
FORMIC ACID[3 atoms] A 100.0
/99.7 3
/3 R1A_SARS2 Papain-like protease

8okk[1] I FMT
FORMIC ACID[3 atoms] B 100.0
/100.0 1
/1 R1AB_SARS2 3C-like proteinase nsp5

8okk[1] U FMT
FORMIC ACID[3 atoms] B 100.0
/100.0 2
/2 R1AB_SARS2 3C-like proteinase nsp5

8okl[1] F FMT
FORMIC ACID[3 atoms] B 100.0
/100.0 3
/3 R1AB_SARS2 3C-like proteinase nsp5

6xkh[3] H ACT
ACETATE ION[4 atoms] A 100.0
/100.0 4
/4 R1AB_SARS2 3C-like proteinase

7jir[6] L ACT
ACETATE ION[4 atoms] A 85.7
/99.7 7
/7 R1A_SARS2 Papain-like protease

7jit[2] L ACT
ACETATE ION[4 atoms] A 100.0
/99.7 5
/5 R1A_SARS2 Papain-like protease

7jn2[2] L ACT
ACETATE ION[4 atoms] A 100.0
/100.0 2
/2 R1A_SARS2 Papain-like protease

8fwn[1] G ACT
ACETATE ION[4 atoms] A 100.0
/99.7 4
/4 R1AB_SARS2 Papain-like protease nsp3

8g62[3] J ACT
ACETATE ION[4 atoms] A 100.0
/100.0 3
/3 R1A_SARS2 Non-structural protein 3

8g62[2] K ACT
ACETATE ION[4 atoms] A 100.0
/100.0 6
/6 R1A_SARS2 Non-structural protein 3

8g62[1] L ACT
ACETATE ION[4 atoms] A 100.0
/100.0 4
/4 R1A_SARS2 Non-structural protein 3

8okk[1] P ACT
ACETATE ION[4 atoms] B 100.0
/100.0 4
/4 R1AB_SARS2 3C-like proteinase nsp5

8okk[1] Q ACT
ACETATE ION[4 atoms] B 100.0
/100.0 2
/2 R1AB_SARS2 3C-like proteinase nsp5

6yb7[2] H PEG
DI(HYDROXYETHYL)ETHER[7 atoms] A 100.0
/100.0 4
/4 R1AB_SARS2 3C-like proteinase

6yvf[2] I PEG
DI(HYDROXYETHYL)ETHER[7 atoms] A 100.0
/100.0 4
/4 R1AB_SARS2 3C-like proteinase

6yvf[4] J PEG
DI(HYDROXYETHYL)ETHER[7 atoms] A 100.0
/100.0 2
/2 R1AB_SARS2 3C-like proteinase

6yvf[2] K PEG
DI(HYDROXYETHYL)ETHER[6 atoms] A 100.0
/100.0 1
/1 R1AB_SARS2 3C-like proteinase

7ay7[5] H PEG
DI(HYDROXYETHYL)ETHER[7 atoms] A 100.0
/100.0 2
/2 R1AB_SARS2 3C-like proteinase

7b2j[4] C PEG
DI(HYDROXYETHYL)ETHER[5 atoms] A 100.0
/100.0 3
/3 R1AB_SARS2 3C-like proteinase nsp5

7a1u[4] H IMD
IMIDAZOLE[5 atoms] A 100.0
/100.0 4
/4 R1AB_SARS2 3C-like proteinase

7a1u[6] I IMD
IMIDAZOLE[5 atoms] A 100.0
/100.0 3
/3 R1AB_SARS2 3C-like proteinase

7abu[4] C IMD
IMIDAZOLE[5 atoms] A 100.0
/100.0 3
/3 R1AB_SARS2 3C-like proteinase

7aqi[2] E IMD
IMIDAZOLE[5 atoms] A 100.0
/100.0 4
/4 R1AB_SARS2 3C-like proteinase

7aqi[2] E IMD
IMIDAZOLE[5 atoms] A 100.0
/100.0 1
/1 R1AB_SARS2 3C-like proteinase

7ax6[2] E IMD
IMIDAZOLE[5 atoms] A 100.0
/100.0 7
/7 R1AB_SARS2 3C-like proteinase

7axm[4] G IMD
IMIDAZOLE[5 atoms] A 100.0
/100.0 2
/2 R1AB_SARS2 3C-like proteinase

7b83[2] C IMD
IMIDAZOLE[5 atoms] A 100.0
/99.7 3
/3 R1AB_SARS2 3C-like proteinase

7d3i[2] C TRS
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL[8 atoms] A 100.0
/100.0 3
/3 R1A_SARS2 3C-like proteinase

7d7k[4] L SO4
SULFATE ION[5 atoms] A 100.0
/99.7 5
/5 R1AB_SARS2 Non-structural protein 3

7d7k[4] M SO4
SULFATE ION[5 atoms] A 100.0
/99.7 2
/2 R1AB_SARS2 Non-structural protein 3

7d7k[2] N SO4
SULFATE ION[5 atoms] A 100.0
/99.7 2
/2 R1AB_SARS2 Non-structural protein 3

7d7k[1] W SO4
SULFATE ION[5 atoms] B 100.0
/99.7 3
/3 R1AB_SARS2 Non-structural protein 3

7d7l[1] J SO4
SULFATE ION[5 atoms] A 100.0
/99.7 3
/3 R1AB_SARS2 Non-structural protein 3

7d7l[1] K SO4
SULFATE ION[5 atoms] A 100.0
/99.7 4
/4 R1AB_SARS2 Non-structural protein 3

7d7l[1] V SO4
SULFATE ION[5 atoms] B 100.0
/99.7 2
/2 R1AB_SARS2 Non-structural protein 3

7e6k[2] G SO4
SULFATE ION[5 atoms] A 100.0
/100.0 8
/8 R1AB_SARS2 3C-like proteinase

7e6k[14] H SO4
SULFATE ION[5 atoms] A 100.0
/100.0 2
/2 R1AB_SARS2 3C-like proteinase

7jrn[1] E SO4
SULFATE ION[5 atoms] A 100.0
/100.0 2
/2 R1A_SARS2 Non-structural protein 3

7jrn[4] F SO4
SULFATE ION[5 atoms] A 100.0
/100.0 2
/2 R1A_SARS2 Non-structural protein 3

7jrn[10] I SO4
SULFATE ION[5 atoms] B 100.0
/100.0 3
/3 R1A_SARS2 Non-structural protein 3

7jrn[1] J SO4
SULFATE ION[5 atoms] B 100.0
/100.0 5
/5 R1A_SARS2 Non-structural protein 3

7lbr[10] D SO4
SULFATE ION[5 atoms] A 100.0
/100.0 5
/5 R1A_SARS2 Non-structural protein 3

7lbs[1] H SO4
SULFATE ION[5 atoms] A 100.0
/100.0 4
/4 R1A_SARS2 Non-structural protein 3

7llf[2] H SO4
SULFATE ION[5 atoms] A 100.0
/100.0 1
/1 R1A_SARS2 Non-structural protein 3

7llz[1] G SO4
SULFATE ION[5 atoms] A 100.0
/100.0 2
/2 R1A_SARS2 Non-structural protein 3

7llz[3] L SO4
SULFATE ION[5 atoms] B 100.0
/100.0 5
/5 R1A_SARS2 Non-structural protein 3

7mat[1] D SO4
SULFATE ION[5 atoms] B 100.0
/100.0 3
/3 R1AB_SARS2 3C-like proteinase

7mau[1] D SO4
SULFATE ION[5 atoms] A 100.0
/100.0 2
/2 R1AB_SARS2 3C-like proteinase

7nt4[1] K SO4
SULFATE ION[5 atoms] A 100.0
/100.0 4
/4 R1AB_SARS2 Non-structural protein 3

7nt4[1] T SO4
SULFATE ION[5 atoms] B 100.0
/100.0 3
/3 R1AB_SARS2 Non-structural protein 3

7nt4[1] U SO4
SULFATE ION[5 atoms] B 100.0
/100.0 2
/2 R1AB_SARS2 Non-structural protein 3

8eua[1] F SO4
SULFATE ION[5 atoms] A 100.0
/100.0 2
/2 R1AB_SARS2 Papain-like protease nsp3

7jir[5] K MES
2-(N-MORPHOLINO)-ETHANESULFONIC ACID[12 atoms] A 100.0
/99.7 3
/3 R1A_SARS2 Papain-like protease

7kol[1] K MES
2-(N-MORPHOLINO)-ETHANESULFONIC ACID[12 atoms] A 100.0
/100.0 6
/6 R1A_SARS2 Papain-like protease

7lbs[2] F BO3
BORIC ACID[4 atoms] A 100.0
/100.0 4
/4 R1A_SARS2 Non-structural protein 3

7lbs[2] G BO3
BORIC ACID[4 atoms] A 100.0
/100.0 7
/7 R1A_SARS2 Non-structural protein 3

7lbs[1] I BO3
BORIC ACID[4 atoms] A 100.0
/100.0 10
/10 R1A_SARS2 Non-structural protein 3

7lbs[1] O BO3
BORIC ACID[4 atoms] B 100.0
/100.0 2
/2 R1A_SARS2 Non-structural protein 3

7nf5[2] F IPA
ISOPROPYL ALCOHOL[4 atoms] A 100.0
/100.0 2
/2 R1AB_SARS2 3C-like proteinase

7nf5[2] F IPA
ISOPROPYL ALCOHOL[4 atoms] A 100.0
/100.0 2
/2 R1AB_SARS2 3C-like proteinase

7nf5[4] G IPA
ISOPROPYL ALCOHOL[4 atoms] A 100.0
/100.0 4
/4 R1AB_SARS2 3C-like proteinase

7nf5[2] I IPA
ISOPROPYL ALCOHOL[4 atoms] A 100.0
/100.0 1
/1 R1AB_SARS2 3C-like proteinase

7q5f[1] I NO3
NITRATE ION[4 atoms] B 100.0
/100.0 3
/3 R1AB_SARS2 3C-like proteinase

7q5f[1] K NO3
NITRATE ION[4 atoms] B 100.0
/100.0 3
/3 R1AB_SARS2 3C-like proteinase

7z2k[1] H MLI
MALONATE ION[7 atoms] B 100.0
/100.0 2
/2 R1AB_SARS2 3C-like proteinase nsp5

8okk[4] S MPD
(4S)-2-METHYL-2,4-PENTANEDIOL[8 atoms] B 100.0
/100.0 4
/4 R1AB_SARS2 3C-like proteinase nsp5

6wrh[3] C PO4
PHOSPHATE ION[5 atoms] A 83.3
/99.7 6
/6 R1AB_SARS2 Non-structural protein 3

6wrh[3] D PO4
PHOSPHATE ION[5 atoms] A 100.0
/99.7 2
/2 R1AB_SARS2 Non-structural protein 3

6wrh[2] E PO4
PHOSPHATE ION[5 atoms] A 100.0
/99.7 5
/5 R1AB_SARS2 Non-structural protein 3

7d6h[1] C PO4
PHOSPHATE ION[5 atoms] A 83.3
/99.7 6
/6 R1A_SARS2 Papain-like protease

7nfv[10] E PO4
PHOSPHATE ION[5 atoms] A 100.0
/100.0 5
/5 R1A_SARS2 Papain-like protease nsp3

7ofu[3] G PO4
PHOSPHATE ION[5 atoms] A 100.0
/100.0 5
/5 R1A_SARS2 Papain-like protease nsp3

7ofu[3] H PO4
PHOSPHATE ION[5 atoms] A 100.0
/100.0 2
/2 R1A_SARS2 Papain-like protease nsp3

7ofu[6] I PO4
PHOSPHATE ION[5 atoms] A 100.0
/100.0 1
/1 R1A_SARS2 Papain-like protease nsp3

7qch[3] G PO4
PHOSPHATE ION[5 atoms] A 100.0
/100.0 2
/2 R1A_SARS2 Papain-like protease nsp3

7qci[1] I PO4
PHOSPHATE ION[5 atoms] A 100.0
/100.0 1
/1 R1A_SARS2 Papain-like protease nsp3

7qcj[2] J PO4
PHOSPHATE ION[5 atoms] A 100.0
/100.0 1
/1 R1A_SARS2 Papain-like protease nsp3

7qcj[1] K PO4
PHOSPHATE ION[5 atoms] A 100.0
/100.0 4
/4 R1A_SARS2 Papain-like protease nsp3

8fwn[1] B PO4
PHOSPHATE ION[5 atoms] A 83.3
/99.7 6
/6 R1AB_SARS2 Papain-like protease nsp3

6wrh[11] H GOL
GLYCEROL[6 atoms] A 100.0
/99.7 3
/3 R1AB_SARS2 Non-structural protein 3

6wrh[4] I GOL
GLYCEROL[6 atoms] A 100.0
/99.7 6
/6 R1AB_SARS2 Non-structural protein 3

6xa9[5] G GOL
GLYCEROL[6 atoms] A 100.0
/100.0 5
/5 R1AB_SARS2 Non-structural protein 3

6xa9[2] H GOL
GLYCEROL[6 atoms] A 100.0
/100.0 3
/3 R1AB_SARS2 Non-structural protein 3

6xa9[25] I GOL
GLYCEROL[6 atoms] A 100.0
/100.0 5
/5 R1AB_SARS2 Non-structural protein 3

6xa9[1] P GOL
GLYCEROL[6 atoms] E 100.0
/100.0 2
/2 R1AB_SARS2 Non-structural protein 3

6xbi[1] E GOL
GLYCEROL[6 atoms] A 100.0
/100.0 4
/4 R1AB_SARS2 3C-like proteinase

7cuu[1] H GOL
GLYCEROL[6 atoms] A 100.0
/100.0 1
/1 R1AB_SARS2 3C protein

7cuu[4] F GOL
GLYCEROL[6 atoms] B 100.0
/100.0 2
/2 R1AB_SARS2 3C protein

7cuu[1] G GOL
GLYCEROL[6 atoms] B 100.0
/100.0 6
/6 R1AB_SARS2 3C protein

7dpu[2] E GOL
GLYCEROL[6 atoms] B 100.0
/100.0 4
/4 R1A_SARS2 3C-like proteinase

7lbr[1] G GOL
GLYCEROL[6 atoms] A 100.0
/100.0 3
/3 R1A_SARS2 Non-structural protein 3

7lbr[2] L GOL
GLYCEROL[6 atoms] B 100.0
/100.0 4
/4 R1A_SARS2 Non-structural protein 3

7lbs[3] M GOL
GLYCEROL[6 atoms] B 100.0
/100.0 6
/6 R1A_SARS2 Non-structural protein 3

7lbs[1] N GOL
GLYCEROL[6 atoms] B 100.0
/100.0 6
/6 R1A_SARS2 Non-structural protein 3

7nfv[2] C GOL
GLYCEROL[6 atoms] A 100.0
/100.0 6
/6 R1A_SARS2 Papain-like protease nsp3

7qcg[1] C GOL
GLYCEROL[6 atoms] A 100.0
/100.0 3
/3 R1A_SARS2 Papain-like protease nsp3

7qcj[3] D GOL
GLYCEROL[6 atoms] A 100.0
/100.0 3
/3 R1A_SARS2 Papain-like protease nsp3

7rn1[3] E GOL
GLYCEROL[6 atoms] A 100.0
/100.0 5
/5 R1AB_SARS2 3C-like proteinase

7t70[1] FA GOL
GLYCEROL[6 atoms] B 100.0
/99.7 3
/3 R1AB_SARS2 3C-like proteinase

7t70[1] JA GOL
GLYCEROL[6 atoms] B 100.0
/99.7 4
/4 R1AB_SARS2 3C-like proteinase

7t8m[1] F GOL
GLYCEROL[6 atoms] A 100.0
/99.7 4
/4 R1AB_SARS2 3C-like proteinase

7t8m[1] G GOL
GLYCEROL[6 atoms] A 100.0
/99.7 4
/4 R1AB_SARS2 3C-like proteinase

8dsu[1] C GOL
GLYCEROL[6 atoms] B 100.0
/100.0 2
/2 R1AB_SARS2 3C-like proteinase nsp5

8dsu[1] F GOL
GLYCEROL[6 atoms] B 100.0
/100.0 2
/2 R1AB_SARS2 3C-like proteinase nsp5

8fwn[1] C GOL
GLYCEROL[6 atoms] A 100.0
/99.7 6
/6 R1AB_SARS2 Papain-like protease nsp3

8fwn[1] H GOL
GLYCEROL[6 atoms] A 100.0
/99.7 4
/4 R1AB_SARS2 Papain-like protease nsp3

7mpb[1] F ETF
TRIFLUOROETHANOL[6 atoms] B 100.0
/99.7 5
/5 R1AB_SARS2 3C-like proteinase

7ybg[1] B DTT
2,3-DIHYDROXY-1,4-DITHIOBUTANE[8 atoms] A 100.0
/99.1 9
/9 R1A_SARS2 Papain-like protease nsp3

3.a³:asym_id for the contact molecule. 4.a⁴:asym_id for the template homologue. 5.identity[%]⁵:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon⁶:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.

MONOMER
4405
	pdb_id	a¹	identity[%]²	description
	7msw	A	100.0	R1AB_SARS2 Non-structural protein 2
	6wuu	B	98.8	R1AB_SARS2 Non-structural protein 3
	6xbi	A	100.0	R1AB_SARS2 3C-like proteinase
	1.a¹:asym_id for the homologue. 2.identity[%]²:sequence identity between the query and the homologue.

Contact Molecules for Homologous Proteins

Summary Bars[0.0 %]

UniProt Feature Tables [P0DTC1(R1A_SARS2)]