HOMCOS(prot_sch_conbars.cgi):

		Contact Molecules for Homologous Proteins
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PID

QueryLength

Homolgous Sequence in PDB

UniProt Query

TITLE

1684858

7073

500

P0C6X7(R1AB_SARS)

RecName: Full=Replicase polyprotein 1ab; Short=pp1ab;AltName: Full=ORF1ab polyprotein;Contains: RecName: Full=Host translation inhibitor nsp1; AltName: Full=Leader protein; AltName: Full=Non-structural protein 1; Short=nsp1;Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog;Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; EC=3.4.19.12 ; EC=3.4.22.- ; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO;Contains: RecName: Full=Non-structural protein 4; Short=nsp4;Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; EC=3.4.22.69 ; AltName: Full=Main protease; Short=Mpro; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=SARS coronavirus main proteinase;Contains: RecName: Full=Non-structural protein 6; Short=nsp6;Contains: RecName: Full=Non-structural protein 7; Short=nsp7;Contains: RecName: Full=Non-structural protein 8; Short=nsp8;Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; EC=2.7.7.50;Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL;Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; EC=2.7.7.48; AltName: Full=Non-structural protein 12; Short=nsp12;Contains: RecName: Full=Helicase nsp13; Short=Hel; EC=3.6.4.12 ; EC=3.6.4.13 ; AltName: Full=Non-structural protein 13; Short=nsp13;Contains: RecName: Full=Guanine-N7 methyltransferase nsp14 ; EC=2.1.1.-; EC=2.1.1.56 ; EC=3.1.13.-; AltName: Full=Non-structural protein 14; Short=nsp14; AltName: Full=Proofreading exoribonuclease nsp14 ; Short=ExoN;Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; EC=4.6.1.- ; AltName: Full=NendoU; AltName: Full=Non-structural protein 15; Short=nsp15;Contains: RecName: Full=2'-O-methyltransferase nsp16; EC=2.1.1.57 ; AltName: Full=Non-structural protein 16; Short=nsp16;

QUERYSEQ

MESLVLGVNEKTHVQLSLPVLQVRDVLVRGFGDSVEEALSEAREHLKNGTCGLVELEKGVLPQLEQPYVFIKRSDALSTNHGHKVVELVAEMDGIQYGRSGITLGVLVPHVGETPIAYRNVLLRKNGNKGAGGHSYGIDLKSYDLGDELG
TDPIEDYEQNWNTKHGSGALRELTRELNGGAVTRYVDNNFCGPDGYPLDCIKDFLARAGKSMCTLSEQLDYIESKRGVYCCRDHEHEIAWFTERSDKSYEHQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRI
RSVYPVASPQECNNMHLSTLMKCNHCDEVSWQTCDFLKATCEHCGTENLVIEGPTTCGYLPTNAVVKMPCPACQDPEIGPEHSVADYHNHSNIETRLRKGGRTRCFGGCVFAYVGCYNKRAYWVPRASADIGSGHTGITGDNVETLNEDL
LEILSRERVNINIVGDFHLNEEVAIILASFSASTSAFIDTIKSLDYKSFKTIVESCGNYKVTKGKPVKGAWNIGQQRSVLTPLCGFPSQAAGVIRSIFARTLDAANHSIPDLQRAAVTILDGISEQSLRLVDAMVYTSDLLTNSVIIMAY
VTGGLVQQTSQWLSNLLGTTVEKLRPIFEWIEAKLSAGVEFLKDAWEILKFLITGVFDIVKGQIQVASDNIKDCVKCFIDVVNKALEMCIDQVTIAGAKLRSLNLGEVFIAQSKGLYRQCIRGKEQLQLLMPLKAPKEVTFLEGDSHDTV
LTSEEVVLKNGELEALETPVDSFTNGAIVGTPVCVNGLMLLEIKDKEQYCALSPGLLATNNVFRLKGGAPIKGVTFGEDTVWEVQGYKNVRITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLTNMGIDLDE
WSVATFYLFDDAGEENFSSRMYCSFYPPDEEEEDDAECEEEEIDETCEHEYGTEDDYQGLPLEFGASAETVRVEEEEEEDWLDDTTEQSEIEPEPEPTPEEPVNQFTGYLKLTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVA
GALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNLAKKCLHVVGPNLNAGEDIQLLKAAYENFNSQDILLAPLLSAGIFGAKPLQSLQVCVQTVRTQVYIAVNDKALYEQVVMDYLDNLKPRVEAPKQEEPPNTEDSKTEEKSVVQK
PVDVKPKIKACIDEVTTTLEETKFLTNKLLLFADINGKLYHDSQNMLRGEDMSFLEKDAPYMVGDVITSGDITCVVIPSKKAGGTTEMLSRALKKVPVDEYITTYPGQGCAGYTLEEAKTALKKCKSAFYVLPSEAPNAKEEILGTVSWN
LREMLAHAEETRKLMPICMDVRAIMATIQRKYKGIKIQEGIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGFNLEEAARCMRSLKAPAVVSVSSPDAVTTYNGYLTSSSKTSEEHFVETVSLAGSYRDWSYSGQRTELG
VEFLKRGDKIVYHTLESPVEFHLDGEVLSLDKLKSLLSLREVKTIKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNN
CYLSSVLLALQQLEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKTGVSIPCVCGRDATQYLVQQESSFVMMSAPPAEYKLQQGTFLC
ANEYTGNYQCGHYTHITAKETLYRIDGAHLTKMSEYKGPVTDVFYKETSYTTTIKPVSYKLDGVTYTEIEPKLDGYYKKDNAYYTEQPIDLVPTQPLPNASFDNFKLTCSNTKFADDLNQMTGFTKPASRELSVTFFPDLNGDVVAIDYR
HYSASFKKGAKLLHKPIVWHINQATTKTTFKPNTWCLRCLWSTKPVDTSNSFEVLAVEDTQGMDNLACESQQPTSEEVVENPTIQKEVIECDVKTTEVVGNVILKPSDEGVKVTQELGHEDLMAAYVENTSITIKKPNELSLALGLKTIA
THGIAAINSVPWSKILAYVKPFLGQAAITTSNCAKRLAQRVFNNYMPYVFTLLFQLCTFTKSTNSRIRASLPTTIAKNSVKSVAKLCLDAGINYVKSPKFSKLFTIAMWLLLLSICLGSLICVTAAFGVLLSNFGAPSYCNGVRELYLNS
SNVTTMDFCEGSFPCSICLSGLDSLDSYPALETIQVTISSYKLDLTILGLAAEWVLAYMLFTKFFYLLGLSAIMQVFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYIWKSYVHIMDGCTSSTCMMCYKRNRATRVEC
TTIVNGMKRSFYVYANGGRGFCKTHNWNCLNCDTFCTGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVAVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDESASKSASVYYSQLMCQPILLLD
QALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSE
QLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLKGGKIVSTCFKLMLKATLLCVLAALVCYIVMPVHTLSIHDGYTNEIIGYKAIQDGVTRDIISTDDCFANKHAGFDAWFSQRGGSYKNDKSCPVVAAIITREIGFIVPGLPGTV
LRAINGDFLHFLPRVFSAVGNICYTPSKLIEYSDFATSACVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDAEYCRHGTCERSEVGICLSTSGRWVLNNEHYRALSGVFCGVDA
MNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRVFGEYNHVVAANALLFLMSFTILCLVPAYSFLPGVYSVFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWITAIYVFCISLKHCHWFFNNYLRKRVMFNGVTFS
TFEEAALCTFLLNKEMYLKLRSETLLPLTQYNRYLALYNKYKYFSGALDTTSYREAACCHLAKALNDFSNSGADVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLIR
KSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYA
AVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQGKFKKIVKGTHHWMLLTFLTSLLILVQSTQWSLFFFVYENAFLPFTLGIMAIAA
CAMLLVKHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRIMTWLELADTSLSGYRLKDCVMYASALVLLILMTARTVYDDAARRVWTLMNVITLVYKVYYGNALDQAISMWALVISVTSNYSGVVTTIMFLARAIVFVCVEYYPLLFITG
NTLQCIMLVYCFLGYCCCCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQG
AVDINRLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVV
VPDYGTYKNTCDGNTFTYASALWEIQQVVDADSKIVQLSEINMDNSPNLAWPLIVTALRANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNNSKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGP
KVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVC
GMWKGYGCSCDQLREPLMQSADASTFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNEKVAGFAKFLKTNCCRFQEKDEEGNLLDSYFVVKRHTMSNYQHEETIYNLVKDCPAVAVHDFFKFRVDGDMVPHISRQRLTKYTMADLVYAL
RHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQSLLKTVQFCDAMRDAGIVGVLTLDNQDLNGNWYDFGDFVQVAPGCGVPIVDSYYSLLMPILTLTRALAAESHMDADLAKPLIKWDLLKYDFTEERLC
LFDRYFKYWDQTYHPNCINCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFKE
GSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAA
TRGATVVIGTSKFYGGWHNMLKTVYSDVETPHLMGWDYPKCDRAMPNMLRIMASLVLARKHNTCCNLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECL
YRNRDVDHEFVDEFYAYLRKHFSMMILSDDAVVCYNSNYAAQGLVASIKNFKAVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVF
HLYLQYIRKLHDELTGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQAVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDVTQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVG
SDNVTDFNAIATCDWTNAGDYILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNYVFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTLVPQEHYVRI
TGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYI
GDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQT
TETAHSCNVNRFNVAITRAKIGILCIMSDRDLYDKLQFTSLEIPRRNVATLQAENVTGLFKDCSKIITGLHPTQAPTHLSVDIKFKTEGLCVDIPGIPKDMTYRRLISMMGFKMNYQVNGYPNMFITREEAIRHVRAWIGFDVEGCHATR
DAVGTNLPLQLGFSTGVNLVAVPTGYVDTENNTEFTRVNAKPPPGDQFKHLIPLMYKGLPWNVVRIKIVQMLSDTLKGLSDRVVFVLWAHGFELTSMKYFVKIGPERTCCLCDKRATCFSTSSDTYACWNHSVGFDYVYNPFMIDVQQWG
FTGNLQSNHDQHCQVHGNAHVASCDAIMTRCLAVHECFVKRVDWSVEYPIIGDELRVNSACRKVQHMVVKSALLADKFPVLHDIGNPKAIKCVPQAEVEWKFYDAQPCSDKAYKIEELFYSYATHHDKFTDGVCLFWNCNVDRYPANAIV
CRFDTRVLSNLNLPGCDGGSLYVNKHAFHTPAFDKSAFTNLKQLPFFYYSDSPCESHGKQVVSDIDYVPLKSATCITRCNLGGAVCRHHANEYRQYLDAYNMMISAGFSLWIYKQFDTYNLWNTFTRLQSLENVAYNVVNKGHFDGHAGE
APVSIINNAVYTKVDGIDVEIFENKTTLPVNVAFELWAKRNIKPVPEIKILNNLGVDIAANTVIWDYKREAPAHVSTIGVCTMTDIAKKPTESACSSLTVLFDGRVEGQVDLFRNARNGVLITEGSVKGLTPSKGPAQASVNGVTLIGES
VKTQFNYFKKVDGIIQQLPETYFTQSRDLEDFKPRSQMETDFLELAMDEFIQRYKLEGYAFEHIVYGDFSHGQLGGLHLMIGLAKRSQDSPLKLEDFIPMDSTVKNYFITDAQTGSSKCVCSVIDLLLDDFVEIIKSQDLSVISKVVKVT
IDYAEISFMLWCKDGHVETFYPKLQASQAWQPGVAMPNLYKMQRMLLEKCDLQNYGENAVIPKGIMMNVAKYTQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDFVSDADSTLIGDCATVHTANKWD
LIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLMGHFSWWTAFVTNVNASSSEAFLIGANYLGKPKEQIDGYTMHANYIFWRNTNPIQLSSYSLFDMSKFPLKLRGTAVMSLKENQINDMIYSLL
EKGRLIIRENNRVVVSSDILVNN

[BLAST file for PDB] (plain) (bar) (multiple alignment) [BLAST for UniProt: (plain) (bar) (multiple alignment) (PSSM file) ]

UniProt Feature Tables [P0C6X7(R1AB_SARS)]

7073
	region	name	description
	1-180	CHAIN	/note="Host translation inhibitor nsp1" /id="PRO_0000037309"
	181-818	CHAIN	/note="Non-structural protein 2" /id="PRO_0000037310"
	819-2740	CHAIN	/note="Papain-like protease nsp3" /id="PRO_0000037311"
	2741-3240	CHAIN	/note="Non-structural protein 4" /id="PRO_0000283841"
	3241-3546	CHAIN	/note="3C-like proteinase nsp5" /id="PRO_0000037312"
	3547-3836	CHAIN	/note="Non-structural protein 6" /id="PRO_0000037313"
	3837-3919	CHAIN	/note="Non-structural protein 7" /id="PRO_0000037314"
	3920-4117	CHAIN	/note="Non-structural protein 8" /id="PRO_0000037315"
	4118-4230	CHAIN	/note="RNA-capping enzyme subunit nsp9" /id="PRO_0000037316"
	4231-4369	CHAIN	/note="Non-structural protein 10" /id="PRO_0000037317"
	4370-5301	CHAIN	/note="RNA-directed RNA polymerase nsp12" /id="PRO_0000037318"
	5302-5902	CHAIN	/note="Helicase nsp13" /id="PRO_0000037319"
	5903-6429	CHAIN	/note="Guanine-N7 methyltransferase nsp14" /id="PRO_0000037320"
	6430-6775	CHAIN	/note="Uridylate-specific endoribonuclease nsp15" /id="PRO_0000037321"
	6776-7073	CHAIN	/note="2'-O-methyltransferase nsp16" /id="PRO_0000037322"
	1-2202	TOPO_DOM	/note="Cytoplasmic"
	2203-2223	TRANSMEM	/note="Helical"
	2224-2303	TOPO_DOM	/note="Lumenal"
	2304-2324	TRANSMEM	/note="Helical"
	2325-2754	TOPO_DOM	/note="Cytoplasmic"
	2755-2775	TRANSMEM	/note="Helical"
	2776-3021	TOPO_DOM	/note="Lumenal"
	3022-3042	TRANSMEM	/note="Helical"
	3043-3076	TOPO_DOM	/note="Cytoplasmic"
	3077-3097	TRANSMEM	/note="Helical"
	3098-3104	TOPO_DOM	/note="Lumenal"
	3105-3125	TRANSMEM	/note="Helical"
	3126-3563	TOPO_DOM	/note="Cytoplasmic"
	3564-3584	TRANSMEM	/note="Helical"
	3585-3585	TOPO_DOM	/note="Lumenal"
	3586-3606	TRANSMEM	/note="Helical"
	3607-3611	TOPO_DOM	/note="Cytoplasmic"
	3612-3632	TRANSMEM	/note="Helical"
	3633-3657	TOPO_DOM	/note="Lumenal"
	3658-3678	TRANSMEM	/note="Helical"
	3679-3727	TOPO_DOM	/note="Cytoplasmic"
	3728-3748	TRANSMEM	/note="Helical"
	3749-3755	TOPO_DOM	/note="Lumenal"
	3756-3776	TRANSMEM	/note="Helical"
	3777-7073	TOPO_DOM	/note="Cytoplasmic"
	12-127	DOMAIN	/note="CoV Nsp1 globular"
	148-179	DOMAIN	/note="BetaCoV Nsp1 C-terminal"
	183-456	DOMAIN	/note="CoV Nsp2 N-terminal"
	458-688	DOMAIN	/note="CoV Nsp2 middle"
	690-818	DOMAIN	/note="CoV Nsp2 C-terminal"
	822-930	DOMAIN	/note="Ubiquitin-like 1"
	1003-1169	DOMAIN	/note="Macro 1"
	1207-1335	DOMAIN	/note="Macro 2"
	1343-1470	DOMAIN	/note="Macro 3"
	1472-1538	DOMAIN	/note="DPUP"
	1542-1597	DOMAIN	/note="Ubiquitin-like 2"
	1611-1875	DOMAIN	/note="Peptidase C16"
	1888-1998	DOMAIN	/note="Nucleic acid-binding"
	2023-2132	DOMAIN	/note="G2M"
	2224-2294	DOMAIN	/note="3Ecto"
	2372-2740	DOMAIN	/note="CoV Nsp3 Y"
	3142-3240	DOMAIN	/note="Nsp4C"
	3241-3546	DOMAIN	/note="Peptidase C30"
	3837-3919	DOMAIN	/note="RdRp Nsp7 cofactor"
	3920-4117	DOMAIN	/note="RdRp Nsp8 cofactor"
	4118-4230	DOMAIN	/note="Nsp9 ssRNA-binding"
	4231-4369	DOMAIN	/note="ExoN/MTase coactivator"
	4376-4630	DOMAIN	/note="NiRAN"
	4635-4733	DOMAIN	/note="Nsp12 Interface"
	4734-5301	DOMAIN	/note="Nsp12 RNA-dependent RNA polymerase"
	4981-5143	DOMAIN	/note="RdRp catalytic"
	5302-5385	DOMAIN	/note="CV ZBD"
	5558-5739	DOMAIN	/note="(+)RNA virus helicase ATP-binding"
	5740-5909	DOMAIN	/note="(+)RNA virus helicase C-terminal"
	5974-6189	DOMAIN	/note="ExoN"
	6198-6429	DOMAIN	/note="N7-MTase"
	6430-6490	DOMAIN	/note="Nsp15 N-terminal oligomerization"
	6491-6616	DOMAIN	/note="AV-Nsp11N/CoV-Nsp15M"
	6633-6772	DOMAIN	/note="NendoU"
	6777-7071	DOMAIN	/note="Nidovirus-type SAM-dependent 2'-O-MTase"
	1729-1766	ZN_FING	/note="C4-type" ECO:0000269\|PubMed:16306590"
	4304-4320	ZN_FING
	4347-4360	ZN_FING
	200-236	REGION	/note="C2H2"
	323-344	REGION	/note="C4"
	370-416	REGION	/note="C2HC"
	972-1003	REGION	/note="Disordered"
	1175-1198	REGION	/note="Disordered"
	2203-2324	REGION	/note="HD1"
	2372-2462	REGION	/note="Y1"
	2376-2389	REGION	/note="ZF1"
	2422-2432	REGION	/note="ZF2"
	2463-2740	REGION	/note="CoV-Y"
	2463-2557	REGION	/note="Y2"
	2558-2639	REGION	/note="Y3"
	2640-2740	REGION	/note="Y4"
	2755-3125	REGION	/note="HD2"
	3564-3776	REGION	/note="HD3"
	4736-4950	REGION	/note="RdRp Fingers N-ter"
	4951-4989	REGION	/note="RdRp Palm N-ter"
	4990-5048	REGION	/note="RdRp Fingers C-ter"
	5049-5184	REGION	/note="RdRp Palm C-ter"
	5185-5301	REGION	/note="RdRp Thumb"
	6316-6330	REGION	/note="GpppA-binding"
	972-997	COMPBIAS	/note="Acidic residues"
	1651-1651	ACT_SITE	/note="For PL-PRO activity" ECO:0000269\|PubMed:16306590"
	1812-1812	ACT_SITE	/note="For PL-PRO activity" ECO:0000269\|PubMed:16306590"
	1826-1826	ACT_SITE	/note="For PL-PRO activity" ECO:0000269\|PubMed:16306590"
	3281-3281	ACT_SITE	/note="For 3CL-PRO activity"
	3385-3385	ACT_SITE	/note="For 3CL-PRO activity"
	5128-5128	ACT_SITE
	5129-5129	ACT_SITE
	5130-5130	ACT_SITE
	5992-5992	ACT_SITE
	5994-5994	ACT_SITE
	6093-6093	ACT_SITE
	6170-6170	ACT_SITE
	6175-6175	ACT_SITE
	6663-6663	ACT_SITE
	6678-6678	ACT_SITE
	6718-6718	ACT_SITE
	6821-6821	ACT_SITE
	6905-6905	ACT_SITE
	6945-6945	ACT_SITE
	6978-6978	ACT_SITE
	200-200	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="1"
	231-231	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="1"
	234-234	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="1"
	236-236	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="1"
	323-323	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="2"
	326-326	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="2"
	341-341	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="2"
	344-344	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="2"
	370-370	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="3"
	373-373	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="3"
	382-382	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="3"
	416-416	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="3"
	1729-1729	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="6"
	1732-1732	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="6"
	1764-1764	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="6"
	1766-1766	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="6"
	2376-2376	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="4"
	2381-2381	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="4"
	2386-2386	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="4"
	2389-2389	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="4"
	2422-2422	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="5"
	2425-2425	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="5"
	2429-2429	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="5"
	2432-2432	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="5"
	4304-4304	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="7" ECO:0000269\|PubMed:22022266"
	4307-4307	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="7" ECO:0000269\|PubMed:22022266"
	4313-4313	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="7" ECO:0000269\|PubMed:22022266"
	4320-4320	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="7" ECO:0000269\|PubMed:22022266"
	4347-4347	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="8" ECO:0000269\|PubMed:22022266"
	4350-4350	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="8" ECO:0000269\|PubMed:22022266"
	4358-4358	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="8" ECO:0000269\|PubMed:22022266"
	4360-4360	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="8" ECO:0000269\|PubMed:22022266"
	4578-4578	BINDING	/ligand="Mn(2+)" /ligand_id="ChEBI:CHEBI:29035"
	4587-4587	BINDING	/ligand="Mn(2+)" /ligand_id="ChEBI:CHEBI:29035"
	4664-4664	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="9"
	4670-4670	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="9"
	4675-4675	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="9"
	4679-4679	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="9"
	4856-4856	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="10"
	5011-5011	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="10"
	5014-5014	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="10"
	5015-5015	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="10"
	5306-5306	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="11"
	5309-5309	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="11"
	5317-5317	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="12"
	5320-5320	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="11"
	5327-5327	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="11"
	5330-5330	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="12"
	5334-5334	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="12"
	5340-5340	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="12"
	5351-5351	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="13"
	5356-5356	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="13"
	5373-5373	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="13"
	5376-5376	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="13"
	5583-5590	BINDING	/ligand="ATP" /ligand_id="ChEBI:CHEBI:30616"
	6109-6109	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="14"
	6112-6112	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="14"
	6128-6128	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="14"
	6131-6131	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="14"
	6159-6159	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="15"
	6163-6163	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="15"
	6166-6166	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="15"
	6181-6181	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="15"
	6233-6239	BINDING	/ligand="S-adenosyl-L-methionine" /ligand_id="ChEBI:CHEBI:59789"
	6354-6354	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="16"
	6375-6375	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="16"
	6386-6386	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="16"
	6389-6389	BINDING	/ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="16"
	1-7073	DISORDER	predicted by DISOPRED

MONOMER

7073

pdb_id a¹ identity[%]² description

8gwe A 96.3 R1AB_SARS2 RNA-directed RNA polymerase

7egq R 99.8 R1AB_SARS2 Helicase

5c8u D 100.0 R1AB_CVHSA Guanine-N7 methyltransferase

7fac A 100.0 R1A_SARS Non-structural protein 2

7msw A 68.3 R1AB_SARS2 Non-structural protein 2

2h85 A 99.4 Q6VA80_CVHSA Putative orf1ab polyprotein

4m0w A 99.7 R1A_CVHSA Replicase polyprotein 1a

5b6o A 99.7 R1AB_CVHSA 3C-like proteinase

1.a¹:asym_id for the homologue. 2.identity[%]²:sequence identity between the query and the homologue.

HETERO

7073 pdb_id contact mol homologue

a³ description a⁴ identity[%]⁵ Ncon⁶ description

1uk4[2] C 5-mer peptide of inhibitor[5 aa] A 100.0
/100.0 17
/17 R1AB_CVHSA 3C-like proteinase

1uk4[1] E 5-mer peptide of inhibitor[5 aa] B 100.0
/100.0 3
/3 R1AB_CVHSA 3C-like proteinase

2amq[2] C N-[(5-METHYLISOXAZOL-3-YL)CARBONYL]ALANYL-L-VALYL-.. A 100.0
/100.0 24
/24 R1AB_CVHSA 3C-like proteinase

2hob[10] B N-[(5-METHYLISOXAZOL-3-YL)CARBONYL]ALANYL-L-VALYL-.. A 100.0
/100.0 23
/23 R1AB_CVHSA Replicase polyprotein 1ab

3iwm[4] H N-[(5-METHYLISOXAZOL-3-YL)CARBONYL]ALANYL-L-VALYL-.. C 100.0
/100.0 1
/1 R1A_CVHSA 3C-like proteinase

2z3c[4] B inhibitor[5 aa] A 100.0
/100.0 19
/19 R1AB_CVHSA Replicase polyprotein 1ab (pp1ab)

2z3d[2] B Inhibitor[5 aa] A 100.0
/100.0 18
/18 R1AB_CVHSA Replicase polyprotein 1ab (pp1ab)

3sna[2] B Peptide aldehyde inhibitor Ac-NSFSQ-H[6 aa] A 100.0
/100.0 17
/17 R1A_CVHSA 3C-like proteinase

3snb[2] B Peptide aldehyde inhibitor Ac-DSFDQ-H[6 aa] A 100.0
/100.0 19
/19 R1A_CVHSA 3C-like proteinase

3snc[2] B Peptide aldehyde inhibitor Ac-NSTSQ-H[6 aa] A 100.0
/100.0 18
/18 R1A_CVHSA 3C-like proteinase

3snd[2] C Peptide aldehyde inhibitor Ac-ESTLQ-H[2 aa] A 100.0
/100.0 12
/12 R1A_CVHSA 3C-like proteinase

3sne[2] B Peptide aldehyde inhibitor Ac-ESTLQ-H[6 aa] A 100.0
/100.0 21
/21 R1A_CVHSA 3C-like proteinase

3vb4[4] C B4Z inhibitor[5 aa] A 100.0
/100.0 21
/21 R1A_CVHSA 3C-like proteinase

3vb4[1] C B4Z inhibitor[5 aa] B 100.0
/100.0 1
/1 R1A_CVHSA 3C-like proteinase

3vb6[2] C C6Z inhibitor[4 aa] A 100.0
/100.0 18
/18 R1A_CVHSA 3C-like proteinase

3vb6[1] D C6Z inhibitor[4 aa] A 100.0
/100.0 1
/1 R1A_CVHSA 3C-like proteinase

3vb7[2] C M4Z inhibitor[4 aa] A 100.0
/100.0 20
/20 R1A_CVHSA 3C-like proteinase

3vb7[1] C M4Z inhibitor[4 aa] B 100.0
/100.0 1
/1 R1A_CVHSA 3C-like proteinase

4m0w[4] B RS27A_BOVIN Ubiquitin[76 aa] A 96.2
/99.7 26
/26 R1A_CVHSA Replicase polyprotein 1a

5e6j[2] C UBB_HUMAN Polyubiquitin-B[75 aa] A 100.0
/99.1 11
/11 R1AB_CVHSA Replicase polyprotein 1ab

5tl6[2] D ISG15_HUMAN Ubiquitin-like protein ISG15[78 aa] A 100.0
/100.0 21
/21 R1AB_CVHSA Replicase polyprotein 1ab

5tl7[2] A ISG15_MOUSE Ubiquitin-like protein ISG15[77 aa] B 100.0
/100.0 27
/27 R1AB_CVHSA Replicase polyprotein 1ab

7lfu[3] B Papain-like protease peptide inhibitor VIR250[5 aa.. A 100.0
/100.0 16
/16 R1A_SARS papain-like protease

6m71[54] D R1AB_SARS2 Non-structural protein 8[113 aa] A 100.0
/96.7 46
/46 R1AB_SARS2 RNA-directed RNA polymerase

6nur[1] D R1A_CVHSA NSP8[109 aa] A 100.0
/100.0 2
/2 R1AB_CVHSA NSP12

6xez[34] D R1AB_SARS2 Non-structural protein 8[186 aa] A 100.0
/96.3 12
/12 R1AB_SARS2 RNA-directed RNA polymerase

6xez[19] D R1AB_SARS2 Non-structural protein 8[186 aa] E 100.0
/99.8 4
/4 R1AB_SARS2 Helicase

7btf[6] D R1AB_SARS2 Non-structural protein 8[104 aa] A 100.0
/96.3 1
/1 R1AB_SARS2 RNA-directed RNA polymerase

7bw4[1] B R1AB_SARS2 Non-structural protein 8[115 aa] A 100.0
/96.9 42
/42 R1AB_SARS2 RNA-directed RNA polymerase

7cxm[22] B R1AB_SARS2 Non-structural protein 8[187 aa] H 100.0
/99.8 11
/11 R1AB_SARS2 Helicase

7cxm[3] D R1AB_SARS2 Non-structural protein 8[186 aa] I 100.0
/99.8 3
/3 R1AB_SARS2 Helicase

7cyq[9] B R1AB_SARS2 Non-structural protein 8[187 aa] G 100.0
/99.8 2
/2 R1AB_SARS2 Helicase

7ed5[1] B R1AB_SARS2 Non-structural protein 8[150 aa] A 100.0
/96.3 52
/52 R1AB_SARS2 RNA-directed RNA polymerase

7ed5[1] D R1AB_SARS2 Non-structural protein 8[154 aa] A 100.0
/96.3 17
/17 R1AB_SARS2 RNA-directed RNA polymerase

7egq[2] B R1AB_SARS2 Non-structural protein 8[187 aa] E 100.0
/99.8 5
/5 R1AB_SARS2 Helicase

7egq[1] D R1AB_SARS2 Non-structural protein 8[186 aa] P 100.0
/95.0 1
/1 R1AB_SARS2 Proofreading exoribonuclease

7l1f[1] B R1AB_SARS2 Non-structural protein 8[114 aa] A 100.0
/96.8 40
/40 R1AB_SARS2 RNA-directed RNA polymerase

7rdz[1] D R1AB_SARS2 Non-structural protein 8[185 aa] E 100.0
/99.8 1
/1 R1AB_SARS2 Helicase

7re0[1] B R1AB_SARS2 Non-structural protein 8[186 aa] E 100.0
/99.8 2
/2 R1AB_SARS2 Helicase

7re3[2] G R1AB_SARS2 Non-structural protein 8[186 aa] A 75.0
/96.3 4
/4 R1AB_SARS2 RNA-directed RNA polymerase

6xez[25] A R1AB_SARS2 RNA-directed RNA polymerase[926 aa] E 100.0
/99.8 3
/3 R1AB_SARS2 Helicase

7cxn[1] A R1AB_SARS2 RNA-directed RNA polymerase[926 aa] H 100.0
/99.8 1
/1 R1AB_SARS2 Helicase

7egq[2] A R1AB_SARS2 RNA-directed RNA polymerase[926 aa] E 100.0
/99.8 1
/1 R1AB_SARS2 Helicase

7egq[2] I R1AB_SARS2 RNA-directed RNA polymerase[926 aa] H 100.0
/95.0 17
/17 R1AB_SARS2 Proofreading exoribonuclease

7re3[2] J R1AB_SARS2 RNA-directed RNA polymerase[927 aa] F 100.0
/99.8 10
/10 R1AB_SARS2 Helicase

3aw0[2] B peptide ACE-SER-ALA-VAL-LEU-HIS-H[6 aa] A 100.0
/99.7 18
/18 R1A_CVHSA 3C-Like Proteinase

2q6g[1] C Polypeptide chain[11 aa] A 100.0
/99.7 24
/24 R1AB_CVHSA severe acute respiratory syndrome coronavirus (SAR..

2q6g[1] D Polypeptide chain[8 aa] B 96.0
/99.7 25
/25 R1AB_CVHSA severe acute respiratory syndrome coronavirus (SAR..

3atw[2] C peptide ACE-THR-VAL-ALC-HIS-H[5 aa] A 95.2
/99.7 21
/21 R1A_CVHSA 3C-Like Proteinase

3avz[1] B peptide ACE-SER-ALA-VAL-ALC-HIS-H[6 aa] A 94.7
/99.7 19
/19 R1A_CVHSA 3C-Like Proteinase

7oyg[2] B R1AB_SARS2 SARS-CoV-2 nsp8[81 aa] A 100.0
/96.9 28
/28 R1AB_SARS2 SARS-CoV-2 RNA-dependent RNA polymerase (nsp12)

7thm[1] C R1AB_SARS2 Non-structural protein 7[37 aa] A 100.0
/96.9 7
/7 R1AB_SARS2 RNA-directed RNA polymerase

7thm[1] E R1AB_SARS2 Non-structural protein 9[74 aa] A 81.2
/96.9 16
/16 R1AB_SARS2 RNA-directed RNA polymerase

7bv1[1] D R1AB_SARS2 Non-structural protein 8[99 aa] A 100.0
/96.8 1
/1 R1AB_SARS2 RNA-directed RNA polymerase

6m71[1] C R1AB_SARS2 Non-structural protein 8[43 aa] A 100.0
/96.7 1
/1 R1AB_SARS2 RNA-directed RNA polymerase

6xqb[1] D R1AB_SARS2 Non-structural protein 8[31 aa] A 100.0
/97.3 1
/1 R1AB_SARS2 RNA-directed RNA polymerase

7aap[2] D R1AB_SARS2 Non-structural protein 8[28 aa] A 100.0
/96.3 2
/2 R1AB_SARS2 Non-structural protein 12

6m71[55] B R1AB_SARS2 Non-structural protein 7[70 aa] A 100.0
/96.7 12
/12 R1AB_SARS2 RNA-directed RNA polymerase

6xez[6] C R1AB_SARS2 Non-structural protein 7[73 aa] E 100.0
/99.8 1
/1 R1AB_SARS2 Helicase

7bw4[1] C R1AB_SARS2 Non-structural protein 7[65 aa] A 100.0
/96.9 10
/10 R1AB_SARS2 RNA-directed RNA polymerase

7ed5[1] C R1AB_SARS2 Non-structural protein 7[72 aa] A 100.0
/96.3 18
/18 R1AB_SARS2 RNA-directed RNA polymerase

7egq[2] C R1AB_SARS2 Non-structural protein 7[72 aa] E 100.0
/99.8 1
/1 R1AB_SARS2 Helicase

6xez[24] E R1AB_SARS2 Helicase[596 aa] A 100.0
/96.3 3
/3 R1AB_SARS2 RNA-directed RNA polymerase

7cxn[1] H R1AB_SARS2 Helicase[596 aa] A 100.0
/96.2 1
/1 R1AB_SARS2 RNA-directed RNA polymerase

7egq[2] M R1AB_SARS2 Helicase[588 aa] H 100.0
/95.0 5
/5 R1AB_SARS2 Proofreading exoribonuclease

7re3[2] N R1AB_SARS2 Helicase[590 aa] A 50.0
/96.3 10
/10 R1AB_SARS2 RNA-directed RNA polymerase

7cyq[11] I R1AB_SARS2 Non-structural protein 9[113 aa] A 78.9
/96.3 19
/19 R1AB_SARS2 RNA-directed RNA polymerase

7egq[3] F R1AB_SARS2 Non-structural protein 9[113 aa] H 100.0
/95.0 4
/4 R1AB_SARS2 Proofreading exoribonuclease

7egq[3] H R1AB_SARS2 Proofreading exoribonuclease[523 aa] A 100.0
/96.3 2
/2 R1AB_SARS2 RNA-directed RNA polymerase

7egq[2] P R1AB_SARS2 Proofreading exoribonuclease[524 aa] A 100.0
/96.3 12
/12 R1AB_SARS2 RNA-directed RNA polymerase

7egq[2] P R1AB_SARS2 Proofreading exoribonuclease[524 aa] E 100.0
/99.8 6
/6 R1AB_SARS2 Helicase

5c8s[15] A R1AB_CVHSA Non-structural protein 10[133 aa] B 100.0
/100.0 49
/49 R1AB_CVHSA Guanine-N7 methyltransferase

5nfy[4] E Q1T6X8_CVHSA Polyprotein 1ab[132 aa] A 100.0
/99.8 50
/50 Q1T6X8_CVHSA Polyprotein 1ab

7n0d[2] C R1AB_SARS2 Non-structural protein 10[131 aa] B 100.0
/94.7 4
/4 R1AB_SARS2 Proofreading exoribonuclease

8g6r[1] B A0A1Z2R8Q6_9ALPC nsp8[114 aa] A 53.5
/60.5 43
/44 A0A0U2C263_9ALPC nsp12

8g6r[1] C A0A0M4AW09_9ALPC nsp7[62 aa] A 81.2
/60.5 16
/16 A0A0U2C263_9ALPC nsp12

3.a³:asym_id for the contact molecule. 4.a⁴:asym_id for the template homologue. 5.identity[%]⁵:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon⁶:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.

NUCLEOTIDE

7073 pdb_id contact mol homologue

a³ description a⁴ identity[%]⁵ Ncon⁶ description

7cxm[2] G RNA (5'-R(P*UP*UP*UP*UP*UP*U)-3') I 100.0
/99.8 20
/20 R1AB_SARS2 Helicase

7krn[2] G RNA (43-MER) A 100.0
/96.3 27
/27 R1AB_SARS2 RNA-directed RNA polymerase

7krn[2] G RNA (43-MER) E 100.0
/99.8 32
/32 R1AB_SARS2 Helicase

7rdx[1] H Template RNA A 100.0
/96.3 34
/34 R1AB_SARS2 RNA-directed RNA polymerase

7rdx[1] H Template RNA E 100.0
/99.8 10
/10 R1AB_SARS2 Helicase

7rdy[1] H Template RNA A 100.0
/96.3 32
/32 R1AB_SARS2 RNA-directed RNA polymerase

7rdy[1] H Template RNA E 100.0
/99.8 30
/30 R1AB_SARS2 Helicase

6xqb[1] E RNA (5'-R(*GP*UP*GP*GP*GP*CP*CP*CP*A)-3') A 100.0
/97.3 15
/15 R1AB_SARS2 RNA-directed RNA polymerase

6xqb[1] F RNA (5'-R(*GP*UP*GP*GP*GP*CP*CP*CP*A)-3') A 100.0
/97.3 19
/19 R1AB_SARS2 RNA-directed RNA polymerase

7b3b[1] D DNA/RNA (5'-R(P*CP*UP*AP*CP*GP*CP*G)-D(P*(RMP))-R(.. A 100.0
/96.9 14
/14 R1AB_SARS2 RNA-directed RNA polymerase nsp12

7b3b[1] E RNA (5'-R(P*UP*GP*CP*AP*UP*CP*GP*CP*GP*UP*AP*G)-3'.. A 100.0
/96.9 28
/28 R1AB_SARS2 RNA-directed RNA polymerase nsp12

7b3c[1] D DNA/RNA (5'-R(P*CP*UP*AP*CP*GP*CP*A)-D(P*(RMP))-R(.. A 100.0
/96.9 16
/16 R1AB_SARS2 RNA-directed RNA polymerase nsp12

7b3c[1] E RNA (5'-R(P*UP*CP*AP*CP*UP*UP*GP*CP*GP*UP*AP*G)-3'.. A 100.0
/96.9 26
/26 R1AB_SARS2 RNA-directed RNA polymerase nsp12

7b3d[3] D RNA (5'-R(P*CP*UP*AP*CP*GP*CP*AP*GP*UP*G)-3') A 100.0
/96.9 14
/14 R1AB_SARS2 SARS-CoV-2 RNA-dependent RNA polymerase nsp12

7b3d[3] E RNA (5'-R(P*UP*GP*CP*AP*CP*UP*GP*CP*GP*UP*AP*G)-3'.. A 100.0
/96.9 29
/29 R1AB_SARS2 SARS-CoV-2 RNA-dependent RNA polymerase nsp12

7ozu[1] D Product RNA A 100.0
/96.9 14
/14 R1AB_SARS2 Replicase polyprotein 1ab

7ozu[2] E Template RNA A 100.0
/96.9 30
/30 R1AB_SARS2 Replicase polyprotein 1ab

7ozv[1] D Product RNA A 100.0
/96.9 12
/12 R1AB_SARS2 Replicase polyprotein 1ab

6yyt[1] E RNA product A 100.0
/96.8 14
/14 R1AB_SARS2 nsp12

6yyt[1] G RNA product A 100.0
/96.8 26
/26 R1AB_SARS2 nsp12

7bv2[1] D Primer A 100.0
/96.8 15
/15 R1AB_SARS2 RNA-directed RNA polymerase

7bv2[1] E Templete A 100.0
/96.8 26
/26 R1AB_SARS2 RNA-directed RNA polymerase

7l1f[1] D RNA (5'-R(P*CP*UP*AP*AP*GP*AP*AP*GP*CP*UP*AP*UP*U*.. A 100.0
/96.8 17
/17 R1AB_SARS2 RNA-directed RNA polymerase

7l1f[1] E RNA (5'-R(P*AP*UP*UP*UP*UP*AP*AP*UP*AP*GP*CP*UP*UP.. A 100.0
/96.8 14
/14 R1AB_SARS2 RNA-directed RNA polymerase

7ctt[1] E Primer-RNA (5'-R(P*UP*UP*CP*UP*CP*CP*UP*AP*AP*GP*A.. A 100.0
/96.7 18
/18 R1AB_SARS2 RNA-directed RNA polymerase

7ctt[1] F Template-RNA (5'-R(P*AP*CP*UP*AP*GP*CP*UP*UP*CP*UP.. A 100.0
/96.7 25
/25 R1AB_SARS2 RNA-directed RNA polymerase

7dok[1] B RNA (5'-R(P*CP*CP*CP*UP*AP*UP*AP*AP*CP*UP*UP*AP*AP.. C 100.0
/96.4 26
/26 R1AB_SARS2 RNA-directed RNA polymerase

7dfg[1] B RNA (5'-R(P*CP*CP*CP*UP*AP*UP*AP*AP*CP*UP*UP*AP*AP.. C 100.0
/96.4 30
/30 R1AB_SARS2 RNA-directed RNA polymerase

7dfh[1] E RNA (5'-R(P*GP*CP*UP*AP*UP*GP*UP*G*(LIG))-3') A 100.0
/96.4 13
/13 R1AB_SARS2 RNA-directed RNA polymeras

7dfh[1] F RNA (5'-R(P*CP*CP*CP*CP*CP*AP*CP*AP*UP*AP*GP*C)-3'.. A 100.0
/96.4 24
/24 R1AB_SARS2 RNA-directed RNA polymeras

8gwe[1] J RNA (5'-R(P*AP*UP*UP*A)-3') A 100.0
/96.3 15
/15 R1AB_SARS2 RNA-directed RNA polymerase

7uob[2] E Product RNA (35-MER) A 100.0
/96.3 10
/10 R1AB_SARS2 RNA-directed RNA polymerase

7uob[1] F Template RNA (55-MER) A 100.0
/96.3 24
/24 R1AB_SARS2 RNA-directed RNA polymerase

7uoe[1] F Template RNA (55-MER) A 100.0
/96.3 30
/30 R1AB_SARS2 RNA-directed RNA polymerase

7dte[1] E RNA (57-MER) A 100.0
/96.3 27
/27 R1AB_SARS2 RNA-directed RNA polymerase

7dte[1] F RNA (33-MER) A 100.0
/96.3 15
/15 R1AB_SARS2 RNA-directed RNA polymerase

6xez[9] G Product RNA A 100.0
/96.3 16
/16 R1AB_SARS2 RNA-directed RNA polymerase

7c2k[1] E RNA (29-MER) A 100.0
/96.3 24
/24 R1AB_SARS2 RNA-directed RNA polymerase

7c2k[1] F RNA (5'-R(*UP*GP*UP*UP*CP*GP*AP*CP*GP*AP*CP*AP*CP*.. A 100.0
/96.3 17
/17 R1AB_SARS2 RNA-directed RNA polymerase

7krn[3] F RNA (37-MER) A 100.0
/96.3 20
/20 R1AB_SARS2 RNA-directed RNA polymerase

7krp[1] F RNA (36-MER) A 100.0
/96.3 28
/28 R1AB_SARS2 RNA-directed RNA polymerase

7rdz[6] H Template RNA A 100.0
/96.3 31
/31 R1AB_SARS2 RNA-directed RNA polymerase

7uo4[1] E Product RNA (35-MER) A 100.0
/96.3 16
/16 R1AB_SARS2 RNA-directed RNA polymerase

7uo4[1] F Template RNA (55-MER) A 100.0
/96.3 28
/28 R1AB_SARS2 RNA-directed RNA polymerase

6xez[1] H Template RNA A 100.0
/96.3 21
/21 R1AB_SARS2 RNA-directed RNA polymerase

7cxm[12] E RNA (25-MER) A 100.0
/96.2 10
/10 R1AB_SARS2 RNA-directed RNA polymerase

7cyq[1] E Primer A 100.0
/96.3 16
/16 R1AB_SARS2 RNA-directed RNA polymerase

7cyq[1] F Template A 100.0
/96.3 30
/30 R1AB_SARS2 RNA-directed RNA polymerase

7dok[1] A RNA (5'-R(P*GP*CP*UP*AP*UP*GP*UP*GP*AP*GP*AP*UP*UP.. C 100.0
/96.4 14
/14 R1AB_SARS2 RNA-directed RNA polymerase

7ed5[1] E RNA (5'-R(P*GP*CP*UP*AP*UP*GP*UP*GP*AP*GP*AP*UP*UP.. A 100.0
/96.3 12
/12 R1AB_SARS2 RNA-directed RNA polymerase

7ed5[1] F RNA (5'-R(P*CP*CP*CP*CP*AP*UP*AP*AP*CP*UP*UP*AP*AP.. A 100.0
/96.3 28
/28 R1AB_SARS2 RNA-directed RNA polymerase

7egq[2] T Template RNA A 100.0
/96.3 27
/27 R1AB_SARS2 RNA-directed RNA polymerase

7egq[1] T Template RNA E 100.0
/99.8 3
/3 R1AB_SARS2 Helicase

7eiz[1] H template A 100.0
/96.3 21
/21 R1AB_SARS2 RNA-directed RNA polymerase

7uo7[1] D Product RNA (35-MER) A 100.0
/96.3 17
/17 R1AB_SARS2 RNA-directed RNA polymerase

7uo7[1] E Template RNA (55-MER) A 100.0
/96.3 27
/27 R1AB_SARS2 RNA-directed RNA polymerase

7uo9[1] D Product RNA (35-MER) A 100.0
/96.3 13
/13 R1AB_SARS2 RNA-directed RNA polymerase

7uo9[1] E Template RNA (55-MER) A 100.0
/96.3 34
/34 R1AB_SARS2 RNA-directed RNA polymerase

8gwb[7] F template A 100.0
/96.3 26
/26 R1AB_SARS2 RNA-directed RNA polymerase

8gwb[5] F template G 100.0
/99.8 1
/1 R1AB_SARS2 Helicase

8gwb[1] J RNA (5'-R(P*AP*U)-3') A 100.0
/96.3 10
/10 R1AB_SARS2 RNA-directed RNA polymerase

7bzf[1] E RNA (31-MER) A 100.0
/96.3 25
/25 R1AB_SARS2 RNA-directed RNA polymerase

7bzf[1] F RNA (5'-R(*UP*GP*UP*UP*CP*GP*AP*CP*GP*AP*CP*AP*CP*.. A 100.0
/96.3 13
/13 R1AB_SARS2 RNA-directed RNA polymerase

7aap[1] E RNA (5'-R(P*UP*UP*AP*AP*GP*UP*UP*AP*U)-3') A 100.0
/96.3 16
/16 R1AB_SARS2 Non-structural protein 12

7aap[1] F RNA (5'-R(P*UP*UP*CP*AP*UP*AP*AP*CP*UP*UP*AP*A)-3'.. A 100.0
/96.3 23
/23 R1AB_SARS2 Non-structural protein 12

7dfg[2] A RNA (5'-R(P*AP*GP*AP*UP*UP*AP*AP*GP*UP*UP*AP*U)-3'.. C 100.0
/96.4 14
/14 R1AB_SARS2 RNA-directed RNA polymerase

7doi[1] E RNA (5'-R(P*CP*CP*UP*AP*UP*AP*AP*CP*UP*UP*AP*AP*UP.. A 100.0
/96.2 28
/28 R1AB_SARS2 RNA-directed RNA polymerase

7cxm[2] F RNA (26-MER) A 100.0
/96.2 23
/23 R1AB_SARS2 RNA-directed RNA polymerase

7n0b[1] C RNA (5'-R(*AP*UP*GP*UP*GP*AP*UP*UP*UP*UP*AP*AP*UP*.. B 100.0
/94.9 7
/7 R1AB_SARS2 Proofreading exoribonuclease

7n0b[1] D RNA (5'-R(*AP*GP*AP*AP*GP*CP*UP*AP*UP*UP*AP*AP*AP*.. B 100.0
/94.9 15
/15 R1AB_SARS2 Proofreading exoribonuclease

7n0c[1] C RNA (25-MER) B 100.0
/94.7 10
/10 R1AB_SARS2 Proofreading exoribonuclease

7n0c[1] D RNA (24-MER) B 100.0
/94.7 18
/18 R1AB_SARS2 Proofreading exoribonuclease

7n0d[4] E RNA (5'-R(*GP*GP*GP*GP*AP*UP*GP*UP*GP*AP*UP*UP*UP*.. B 100.0
/94.7 9
/9 R1AB_SARS2 Proofreading exoribonuclease

7n0d[2] F RNA (5'-R(*CP*UP*AP*UP*UP*AP*AP*AP*AP*UP*CP*AP*CP*.. B 100.0
/94.7 16
/16 R1AB_SARS2 Proofreading exoribonuclease

7n0d[2] G RNA (5'-R(*CP*CP*CP*CP*C)-3') B 100.0
/94.7 1
/1 R1AB_SARS2 Proofreading exoribonuclease

7n0d[2] G RNA (5'-R(*CP*CP*CP*CP*C)-3') D 100.0
/94.7 15
/15 R1AB_SARS2 Proofreading exoribonuclease

8g6r[1] D RNA (5'-R(P*AP*AP*GP*AP*AP*GP*CP*UP*AP*UP*UP*AP*AP.. A 93.8
/60.5 16
/16 A0A0U2C263_9ALPC nsp12

8g6r[1] E RNA (5'-R(P*GP*GP*UP*UP*GP*UP*GP*AP*UP*UP*UP*UP*AP.. A 77.8
/60.5 27
/27 A0A0U2C263_9ALPC nsp12

3.a³:asym_id for the contact molecule. 4.a⁴:asym_id for the template homologue. 5.identity[%]⁵:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon⁶:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.

COMPOUND

7073 pdb_id contact mol homologue

a³ description a⁴ identity[%]⁵ Ncon⁶ description

1wof[2] C I12
N-[(5-METHYLISOXAZOL-3-YL)CARBONYL]-L-ALANYL-L-VAL.. A 100.0
/100.0 23
/23 R1AB_CVHSA 3C-like proteinase

2a5i[6] B AZP
(5S,8S,14R)-ETHYL 11-(3-AMINO-3-OXOPROPYL)-8-BENZY.. A 100.0
/100.0 23
/23 R1AB_CVHSA 3C-like peptidase

2alv[2] B CY6
N-((3S,6R)-6-((S,E)-4-ETHOXYCARBONYL-1-((S)-2-OXOP.. A 100.0
/100.0 24
/24 R1AB_CVHSA Replicase polyprotein 1ab

2amd[2] C 9IN
N-(3-FUROYL)-D-VALYL-L-VALYL-N~1~-((1R,2Z)-4-ETHOX.. A 100.0
/100.0 23
/23 R1AB_CVHSA 3C-like proteinase

2d2d[2] C ENB
ETHYL (2E,4S)-4-[((2R)-2-{[N-(TERT-BUTOXYCARBONYL).. A 100.0
/100.0 21
/21 R1AB_CVHSA 3C-like proteinase

2gx4[2] B NOL
N-[(BENZYLOXY)CARBONYL]-O-(TERT-BUTYL)-L-THREONYL-.. A 100.0
/100.0 22
/22 R1AB_CVHSA 3C-like proteinase

2gx4[2] B NOL
N-[(BENZYLOXY)CARBONYL]-O-(TERT-BUTYL)-L-THREONYL-.. A 100.0
/100.0 1
/1 R1AB_CVHSA 3C-like proteinase

2gz7[2] B D3F
2-[(2,4-DICHLORO-5-METHYLPHENYL)SULFONYL]-1,3-DINI.. A 100.0
/100.0 13
/13 R1AB_CVHSA Replicase polyprotein 1ab

2gz8[2] B F3F
S-[5-(TRIFLUOROMETHYL)-4H-1,2,4-TRIAZOL-3-YL] 5-(P.. A 100.0
/100.0 14
/14 R1AB_CVHSA Replicase polyprotein 1ab

2op9[2] C WR1
NALPHA-[(BENZYLOXY)CARBONYL]-N-[(1R)-4-HYDROXY-1-M.. A 100.0
/100.0 13
/13 R1AB_CVHSA Replicase polyprotein 1ab (pp1ab, ORF1AB) 3C-like ..

2v6n[2] B XP1
4-(DIMETHYLAMINO)BENZOIC ACID[11 atoms] A 100.0
/100.0 10
/10 R1AB_CVHSA REPLICASE POLYPROTEIN 1AB

2vj1[1] G XP1
4-(DIMETHYLAMINO)BENZOIC ACID[8 atoms] B 100.0
/100.0 6
/6 A7J8L3_CVHSA SARS CORONAVIRUS MAIN PROTEINASE

2vj1[1] D BEZ
BENZOIC ACID[9 atoms] A 100.0
/100.0 8
/8 A7J8L3_CVHSA SARS CORONAVIRUS MAIN PROTEINASE

2z94[2] C TLD
4-methylbenzene-1,2-dithiol[9 atoms] A 100.0
/100.0 3
/3 R1AB_CVHSA Replicase polyprotein 1ab

2zu4[2] B ZU3
N-[(benzyloxy)carbonyl]-3-[(2,2-dimethylpropanoyl).. A 100.0
/100.0 22
/22 R1A_CVHSA 3C-like proteinase

2zu4[2] B ZU3
N-[(benzyloxy)carbonyl]-3-[(2,2-dimethylpropanoyl).. A 100.0
/100.0 1
/1 R1A_CVHSA 3C-like proteinase

2zu5[2] B ZU5
N-[(benzyloxy)carbonyl]-O-tert-butyl-L-threonyl-N-.. A 100.0
/100.0 22
/22 R1A_CVHSA 3C-like proteinase

2zu5[2] B ZU5
N-[(benzyloxy)carbonyl]-O-tert-butyl-L-threonyl-N-.. A 100.0
/100.0 1
/1 R1A_CVHSA 3C-like proteinase

3d62[2] B 959
benzyl (2-oxopropyl)carbamate[15 atoms] A 100.0
/100.0 10
/10 R1AB_CVHSA 3C-like proteinase

3mj5[1] C GRM
N-(1,3-benzodioxol-5-ylmethyl)-1-[(1R)-1-naphthale.. A 100.0
/100.0 9
/9 R1A_CVHSA Replicase polyprotein 1a

3mj5[1] E GRM
N-(1,3-benzodioxol-5-ylmethyl)-1-[(1R)-1-naphthale.. A 100.0
/100.0 4
/4 R1A_CVHSA Replicase polyprotein 1a

3sn8[2] B S89
N-[(2S)-1-hydroxy-3-phenylpropan-2-yl]-Nalpha-[(2E.. A 100.0
/100.0 15
/15 R1A_CVHSA 3C-like proteinase

3szn[2] B G75
ETHYL (4R)-4-({N-[(BENZYLOXY)CARBONYL]-L-PHENYLALA.. A 100.0
/100.0 17
/17 R1A_CVHSA 3C-like proteinase

3tit[2] B G81
ETHYL (4R)-4-{[N-(TERT-BUTOXYCARBONYL)-L-PHENYLALA.. A 100.0
/100.0 15
/15 R1A_CVHSA SARS coronavirus main protease

3tiu[2] C G82
ETHYL (5S,8S,11R)-8-BENZYL-5-(3-TERT-BUTOXY-3-OXOP.. A 100.0
/100.0 23
/23 R1A_CVHSA SARS coronavirus main protease

3tns[2] B G83
ETHYL (5S,8S,11R)-8-BENZYL-5-(2-TERT-BUTOXY-2-OXOE.. A 100.0
/100.0 24
/24 R1A_CVHSA SARS coronavirus main protease

3tns[2] B G83
ETHYL (5S,8S,11R)-8-BENZYL-5-(2-TERT-BUTOXY-2-OXOE.. A 100.0
/100.0 1
/1 R1A_CVHSA SARS coronavirus main protease

3tnt[2] B G85
N-[(benzyloxy)carbonyl]-O-tert-butyl-L-seryl-N-{(2.. A 100.0
/100.0 22
/22 R1A_CVHSA SARS coronavirus main protease

3v3m[2] B 0EN
N-[(1R)-2-(tert-butylamino)-2-oxo-1-(pyridin-3-yl).. A 100.0
/100.0 15
/15 R1A_CVHSA 3C-like proteinase

4mds[2] B 23H
N-[4-(acetylamino)phenyl]-2-(1H-benzotriazol-1-yl).. A 100.0
/100.0 18
/18 R1A_CVHSA 3C-like proteinase

4ovz[1] D P85
N-[(4-fluorophenyl)methyl]-1-[(1R)-1-naphthalen-1-.. A 100.0
/100.0 11
/11 R1A_CVHSA Papain-like proteinase

4ow0[1] D S88
N-[(3-fluorophenyl)methyl]-1-[(1R)-1-naphthalen-1-.. A 100.0
/100.0 10
/10 R1A_CVHSA papain-like protease

5c8s[2] L G3A
GUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE[50 atoms.. B 100.0
/100.0 16
/16 R1AB_CVHSA Guanine-N7 methyltransferase

5c8t[2] K SAM
S-ADENOSYLMETHIONINE[27 atoms] B 100.0
/100.0 13
/13 R1AB_CVHSA Guanine-N7 methyltransferase

5n19[2] B D03
(S)-N-benzyl-3-((S)-2-cinnamamido-3-phenylpropanam.. A 100.0
/100.0 21
/21 R1AB_CVHSA SARS coronavirus main protease

5n5o[2] B 8O5
(2~{R},3~{S})-3-[[(2~{S})-3-cyclopropyl-2-[[(~{E}).. A 100.0
/100.0 17
/17 R1AB_CVHSA Replicase polyprotein 1ab

6lnq[1] B EJF
N-[(2S)-3-methyl-1-[[(2S)-4-methyl-1-oxidanylidene.. A 100.0
/100.0 19
/19 Severe Acute Respiratory Syndrome Coronavirus 3c L..

6lny[1] B EOC
(2~{S})-4-methyl-~{N}-[(2~{S})-1-oxidanylidene-3-[.. A 100.0
/100.0 16
/16 R1A_CVHSA Replicase polyprotein 1a

6lo0[1] B EOF
(2~{S})-4-methyl-~{N}-[(2~{S})-1-oxidanylidene-3-[.. A 100.0
/100.0 18
/18 R1A_CVHSA Replicase polyprotein 1a

6w79[2] C X77
N-(4-tert-butylphenyl)-N-[(1R)-2-(cyclohexylamino).. A 100.0
/100.0 17
/17 Main protease

6wco[2] D X47
N-(4-tert-butylphenyl)-N-[(1R)-2-(cyclopentylamino.. A 100.0
/100.0 17
/17 A0A3G5BIY8_CVHSA Main protease

6xhl[2] C V2M
N-[(2S)-1-({(2S,3S)-3,4-dihydroxy-1-[(3S)-2-oxopyr.. A 100.0
/100.0 18
/18 R1A_CVHSA 3C-like proteinase

6xhn[2] C V3D
(3S)-3-{[N-(4-methoxy-1H-indole-2-carbonyl)-L-leuc.. A 100.0
/100.0 17
/17 R1A_CVHSA 3C-like proteinase

6xho[1] D V34
ethyl (2E,4S)-4-{[N-(4-methoxy-1H-indole-2-carbony.. A 100.0
/100.0 19
/19 R1A_CVHSA 3C-like proteinase

6y7m[2] B OEW
~{tert}-butyl ~{N}-[1-[(2~{S})-3-cyclohexyl-1-[[(2.. A 100.0
/100.0 20
/20 R1A_SARS 3C-like proteinase

7end[2] B J7R
~{N}-[(1~{S},2~{R})-2-[[4-bromanyl-2-(methylcarbam.. A 100.0
/100.0 17
/17 R1A_CVHSA Replicase polyprotein 1a

7end[2] B J7R
~{N}-[(1~{S},2~{R})-2-[[4-bromanyl-2-(methylcarbam.. A 100.0
/100.0 1
/1 R1A_CVHSA Replicase polyprotein 1a

7k0h[2] E VR4
N-{(2S,3R)-4-(benzylamino)-3-hydroxy-4-oxo-1-[(3S).. A 100.0
/100.0 18
/18 R1A_CVHSA Replicase polyprotein 1a

7lcp[4] B UED
N~2~-[(benzyloxy)carbonyl]-N-{(2S)-1-hydroxy-3-[(3.. A 100.0
/100.0 14
/14 R1AB_SARS 3C-like proteinase

7lmg[2] C Y6G
2-(benzotriazol-1-yl)-~{N}-[4-(1~{H}-imidazol-4-yl.. A 100.0
/100.0 17
/17 R1A_SARS 3C-like proteinase

7lmh[2] B Y6D
2-(benzotriazol-1-yl)-~{N}-(4-pyridin-3-ylphenyl)-.. A 100.0
/100.0 19
/19 R1A_SARS 3C-like proteinase

7lmi[2] C Y6A
2-(benzotriazol-1-yl)-~{N}-[4-(1~{H}-pyrazol-4-yl).. A 100.0
/100.0 16
/16 R1A_SARS 3C-like proteinase

7lmj[2] E Y67
2-(benzotriazol-1-yl)-~{N}-[(3-chlorophenyl)methyl.. A 100.0
/100.0 18
/18 R1A_SARS 3C-like proteinase

7rc1[2] B 4IO
5-chloropyridin-3-yl 1-(3-nitrobenzene-1-sulfonyl).. A 100.0
/100.0 14
/14 R1A_SARS 3C-like proteinase

7vlo[2] C 4WI
(1R,2S,5S)-N-{(1E,2S)-1-imino-3-[(3S)-2-oxopyrroli.. A 100.0
/100.0 22
/22 R1A_SARS 3C-like proteinase

7wqi[2] C 80I
[(3~{S})-3-[[(2~{S})-2-[(4-methoxy-1~{H}-indol-2-y.. A 100.0
/100.0 14
/14 R1A_SARS 3C-like proteinase

7xax[1] C 3WL
5,6,7-trihydroxy-2-phenyl-4H-chromen-4-one[20 atom.. A 100.0
/100.0 14
/14 R1A_SARS 3C-like proteinase nsp5

7ygq[1] C HUR
N-[(2S)-1-[[(2S)-1-(1,3-benzothiazol-2-yl)-1-oxida.. A 100.0
/100.0 20
/20 R1A_SARS 3C-like proteinase nsp5

7zqw[2] B XNV
ethyl (4R)-4-({(2S)-2-[3-{[(5-methyl-1,2-oxazol-3-.. A 100.0
/100.0 19
/19 R1A_SARS 3C-like proteinase nsp5

8hus[2] C 7YY
6-[(6-chloranyl-2-methyl-indazol-5-yl)amino]-3-[(1.. A 100.0
/100.0 18
/18 R1A_SARS 3C-like proteinase nsp5

6xez[12] L ADP
ADENOSINE-5'-DIPHOSPHATE[27 atoms] A 100.0
/96.3 11
/11 R1AB_SARS2 RNA-directed RNA polymerase

6xez[18] R ADP
ADENOSINE-5'-DIPHOSPHATE[27 atoms] E 100.0
/99.8 10
/10 R1AB_SARS2 Helicase

6xez[8] M 1N7
CHAPSO[35 atoms] A 33.3
/96.3 3
/3 R1AB_SARS2 RNA-directed RNA polymerase

6xez[8] N 1N7
CHAPSO[26 atoms] A 100.0
/96.3 4
/4 R1AB_SARS2 RNA-directed RNA polymerase

6xez[10] U 1N7
CHAPSO[36 atoms] A 100.0
/96.3 1
/1 R1AB_SARS2 RNA-directed RNA polymerase

6xez[9] U 1N7
CHAPSO[36 atoms] E 100.0
/99.8 3
/3 R1AB_SARS2 Helicase

7n0d[4] LA 1N7
CHAPSO[25 atoms] B 100.0
/94.7 5
/5 R1AB_SARS2 Proofreading exoribonuclease

5rlk[1] H NYV
1-(propan-2-yl)-1H-imidazole-4-sulfonamide[12 atom.. B 100.0
/99.8 8
/8 R1AB_SARS2 Helicase

5rl8[1] C VVG
N-(2-fluorophenyl)ethanesulfonamide[13 atoms] A 100.0
/99.8 10
/10 R1AB_SARS2 Helicase

5rl8[1] D VVG
N-(2-fluorophenyl)ethanesulfonamide[13 atoms] A 100.0
/99.8 6
/6 R1AB_SARS2 Helicase

5rl9[1] H UR7
1-(3-fluoro-4-methylphenyl)methanesulfonamide[13 a.. B 100.0
/99.8 7
/7 R1AB_SARS2 Helicase

5rlc[1] H VVM
4-amino-N-phenylbenzene-1-sulfonamide[17 atoms] B 100.0
/99.8 9
/9 R1AB_SARS2 Helicase

5rld[1] H VVY
2-phenoxy-1-(pyrrolidin-1-yl)ethan-1-one[15 atoms].. B 100.0
/99.8 6
/6 R1AB_SARS2 Helicase

5rle[1] H VVP
4-methoxy-1H-indole[11 atoms] B 100.0
/99.8 4
/4 R1AB_SARS2 Helicase

5rlg[1] C VW1
(2S)-2-(4-cyanophenoxy)propanamide[14 atoms] A 100.0
/99.8 6
/6 R1AB_SARS2 Helicase

5rlh[1] H K2P
2-(trifluoromethoxy)benzoic acid[14 atoms] B 100.0
/99.8 6
/6 R1AB_SARS2 Helicase

5rli[2] C JFM
N-(2-phenylethyl)methanesulfonamide[13 atoms] A 100.0
/99.8 9
/9 R1AB_SARS2 Helicase

5rli[1] I JFM
N-(2-phenylethyl)methanesulfonamide[13 atoms] B 100.0
/99.8 8
/8 R1AB_SARS2 Helicase

5rlj[1] H VW4
(2S)-2-phenylpropane-1-sulfonamide[13 atoms] B 100.0
/99.8 8
/8 R1AB_SARS2 Helicase

5rll[1] H H04
1-(2-ethoxyphenyl)piperazine[15 atoms] B 100.0
/99.8 4
/4 R1AB_SARS2 Helicase

5rlm[1] H VW7
N-(8-methyl-1,2,3,4-tetrahydroquinolin-5-yl)acetam.. B 100.0
/99.8 3
/3 R1AB_SARS2 Helicase

5rlo[1] H UQS
N-[(2-fluorophenyl)methyl]-1H-pyrazol-4-amine[14 a.. B 100.0
/99.8 6
/6 R1AB_SARS2 Helicase

5rlp[1] H VWA
(1S)-1-(4-fluorophenyl)-N-methylethan-1-amine[11 a.. B 100.0
/99.8 4
/4 R1AB_SARS2 Helicase

5rlr[1] H VWD
(1R)-2-(methylsulfonyl)-1-phenylethan-1-ol[13 atom.. B 100.0
/99.8 8
/8 R1AB_SARS2 Helicase

5rlt[1] H UVJ
3-(2-methyl-1H-benzimidazol-1-yl)propanamide[15 at.. B 100.0
/99.8 5
/5 R1AB_SARS2 Helicase

5rlu[1] C JG4
2-(thiophen-2-yl)-1H-imidazole[10 atoms] A 100.0
/99.8 3
/3 R1AB_SARS2 Helicase

5rlu[1] I JG4
2-(thiophen-2-yl)-1H-imidazole[10 atoms] B 100.0
/99.8 5
/5 R1AB_SARS2 Helicase

5rlv[1] C VWJ
N-(propan-2-yl)-1H-benzimidazol-2-amine[13 atoms] A 100.0
/99.8 5
/5 R1AB_SARS2 Helicase

5rlv[1] D VWJ
N-(propan-2-yl)-1H-benzimidazol-2-amine[13 atoms] A 100.0
/99.8 5
/5 R1AB_SARS2 Helicase

5rlv[1] J VWJ
N-(propan-2-yl)-1H-benzimidazol-2-amine[13 atoms] B 100.0
/99.8 4
/4 R1AB_SARS2 Helicase

5rlw[1] C S9S
~{N}-[2-(4-fluorophenyl)ethyl]methanesulfonamide[1.. A 100.0
/99.8 9
/9 R1AB_SARS2 Helicase

5rlw[1] I S9S
~{N}-[2-(4-fluorophenyl)ethyl]methanesulfonamide[1.. B 100.0
/99.8 8
/8 R1AB_SARS2 Helicase

5rly[1] C K34
5-(1,3-thiazol-2-yl)-1H-1,2,4-triazole[10 atoms] A 100.0
/99.8 7
/7 R1AB_SARS2 Helicase

5rly[1] I K34
5-(1,3-thiazol-2-yl)-1H-1,2,4-triazole[10 atoms] B 100.0
/99.8 4
/4 R1AB_SARS2 Helicase

5rly[1] J K34
5-(1,3-thiazol-2-yl)-1H-1,2,4-triazole[10 atoms] B 100.0
/99.8 5
/5 R1AB_SARS2 Helicase

5rlz[1] C VWM
(3R)-1-acetyl-3-hydroxypiperidine-3-carboxylic aci.. A 100.0
/99.8 8
/8 R1AB_SARS2 Helicase

5rm0[1] H S7G
~{N}-[(3~{R})-1,2,3,4-tetrahydroquinolin-3-yl]etha.. B 100.0
/99.8 5
/5 R1AB_SARS2 Helicase

5rm1[1] H RY4
N-[4-(aminomethyl)phenyl]methanesulfonamide[13 ato.. B 100.0
/99.8 9
/9 R1AB_SARS2 Helicase

5rm2[1] H UXG
1-(diphenylmethyl)azetidin-3-ol[18 atoms] B 100.0
/99.8 8
/8 R1AB_SARS2 Helicase

5rm2[1] I UXG
1-(diphenylmethyl)azetidin-3-ol[18 atoms] B 100.0
/99.8 6
/6 R1AB_SARS2 Helicase

5rm3[1] C S7J
2-(trifluoromethyl)pyrimidine-5-carboxamide[13 ato.. A 100.0
/99.8 8
/8 R1AB_SARS2 Helicase

5rm5[1] H NUA
N-(1-ethyl-1H-pyrazol-4-yl)cyclobutanecarboxamide[.. B 100.0
/99.8 6
/6 R1AB_SARS2 Helicase

5rm6[1] H HR5
~{N}-(cyclobutylmethyl)-1,5-dimethyl-pyrazole-4-ca.. B 100.0
/99.8 9
/9 R1AB_SARS2 Helicase

5rm7[1] H N0E
~{N}-(4-hydroxyphenyl)-3-phenyl-propanamide[18 ato.. B 100.0
/99.8 9
/9 R1AB_SARS2 Helicase

5rma[1] H JHJ
N-(4-methoxyphenyl)-N'-pyridin-4-ylurea[18 atoms] B 100.0
/99.8 8
/8 R1AB_SARS2 Helicase

5rmc[1] H 6SU
methyl 3-(methylsulfonylamino)benzoate[15 atoms] B 100.0
/99.8 9
/9 R1AB_SARS2 Helicase

5rmd[2] C VWY
N-ethyl-4-[(methylsulfonyl)amino]benzamide[16 atom.. A 100.0
/99.8 9
/9 R1AB_SARS2 Helicase

5rme[1] C RYM
4-(benzimidazol-1-ylmethyl)benzenecarbonitrile[18 .. A 100.0
/99.8 6
/6 R1AB_SARS2 Helicase

5rmg[1] H MUK
4,6-dimethyl-~{N}-phenyl-pyrimidin-2-amine[15 atom.. B 100.0
/99.8 6
/6 R1AB_SARS2 Helicase

5rmj[1] C JOV
3-chloro-N-(1-hydroxy-2-methylpropan-2-yl)benzamid.. A 100.0
/99.8 10
/10 R1AB_SARS2 Helicase

5rmm[1] H VXG
(3S,4R)-1-acetyl-4-phenylpyrrolidine-3-carboxylic .. B 100.0
/99.8 10
/10 R1AB_SARS2 Helicase

7nn0[4] E ANP
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER[31 ato.. A 100.0
/99.8 16
/16 R1AB_SARS2 SARS-CoV-2 helicase NSP13

5rl7[1] C VVD
5-(acetylamino)-2-fluorobenzoic acid[14 atoms] A 100.0
/99.8 8
/8 R1AB_SARS2 Helicase

5rl7[1] I VVD
5-(acetylamino)-2-fluorobenzoic acid[14 atoms] B 100.0
/99.8 7
/7 R1AB_SARS2 Helicase

5rlb[1] C VVJ
N-cycloheptyl-N-methylmethanesulfonamide[13 atoms].. A 100.0
/99.8 7
/7 R1AB_SARS2 Helicase

5rlf[1] C NY7
N-(2-methoxy-5-methylphenyl)glycinamide[14 atoms] A 100.0
/99.8 7
/7 R1AB_SARS2 Helicase

5rln[1] C NZG
3-(acetylamino)-4-fluorobenzoic acid[14 atoms] A 100.0
/99.8 8
/8 R1AB_SARS2 Helicase

5rlq[1] C UVA
N-methyl-2-(methylsulfonyl)aniline[12 atoms] A 100.0
/99.8 6
/6 R1AB_SARS2 Helicase

5rls[1] C VWG
N-hydroxyquinoline-2-carboxamide[14 atoms] A 100.0
/99.8 7
/7 R1AB_SARS2 Helicase

5rm4[1] H PK4
2-fluoro-N,3-dimethylbenzene-1-sulfonamide[13 atom.. B 100.0
/99.8 6
/6 R1AB_SARS2 Helicase

5rm8[1] C GQJ
methyl (2~{S},4~{R})-1-(furan-2-ylcarbonyl)-4-oxid.. A 100.0
/99.8 5
/5 R1AB_SARS2 Helicase

5rmb[1] C VWV
ethyl (1,1-dioxo-1lambda~6~,4-thiazinan-4-yl)aceta.. A 100.0
/99.8 7
/7 R1AB_SARS2 Helicase

5rmf[1] C NX7
(2,6-difluorophenyl)(pyrrolidin-1-yl)methanone[15 .. A 100.0
/99.8 5
/5 R1AB_SARS2 Helicase

5rmh[1] C VX4
[(4S)-4-methylazepan-1-yl](1,3-thiazol-4-yl)methan.. A 100.0
/99.8 6
/6 R1AB_SARS2 Helicase

5rmi[1] C STV
~{N}-(1,3-benzodioxol-5-ylmethyl)ethanesulfonamide.. A 100.0
/99.8 5
/5 R1AB_SARS2 Helicase

5rml[1] H VXD
N-(3-chloro-2-methylphenyl)glycinamide[13 atoms] B 100.0
/99.8 8
/8 R1AB_SARS2 Helicase

7nng[2] C UJK
1-(2-methylphenyl)-1,2,3-triazole-4-carboxylic aci.. A 100.0
/99.8 8
/8 R1AB_SARS2 SARS-CoV-2 helicase NSP13

4m0w[1] E NHE
2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID[13 atoms.. A 100.0
/99.7 7
/7 R1A_CVHSA Replicase polyprotein 1a

4m0w[1] F NHE
2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID[13 atoms.. A 100.0
/99.7 6
/6 R1A_CVHSA Replicase polyprotein 1a

4tww[2] C 3A7
(2S)-2-({[(3S,4aR,8aS)-2-(4-bromobenzoyl)decahydro.. A 93.3
/99.7 15
/15 R1AB_CVHSA 3C-like proteinase

4twy[2] B 3BL
(2S)-2-({[(3S,4aR,8aS)-2-(biphenyl-4-ylcarbonyl)de.. A 94.4
/99.7 18
/18 R1AB_CVHSA 3C-like proteinase

4wy3[1] B 3X5
(2S)-2-({[(3R,4aS,8aR)-2-(biphenyl-4-ylcarbonyl)de.. A 93.8
/99.7 16
/16 R1AB_CVHSA 3C-like proteinase

5c5n[2] B SLH
(2S)-3-(1H-imidazol-5-yl)-2-({[(3R,4aS,8aR)-2-(N-p.. A 93.3
/99.7 15
/15 R1AB_CVHSA 3C-like proteinase

6w2a[1] E QYS
(1S,2S)-2-[(N-{[(4,4-difluorocyclohexyl)methoxy]ca.. B 100.0
/99.7 18
/18 R1A_CVHSA Replicase polyprotein 1a

6w2a[1] C VDJ
[4,4-bis(fluoranyl)cyclohexyl]methyl ~{N}-[(2~{S}).. A 100.0
/99.7 16
/16 R1A_CVHSA Replicase polyprotein 1a

2qiq[2] B CYV
ETHYL (4R)-4-{[(2R,5S)-5-{[N-(TERT-BUTOXYCARBONYL).. A 100.0
/99.7 23
/23 R1AB_CVHSA Replicase polyprotein 1ab

5c5o[2] C SDJ
(2S)-3-(1H-imidazol-5-yl)-2-({[(3S,4aR,8aS)-2-(N-p.. A 94.1
/99.7 17
/17 R1AB_CVHSA 3C-like proteinase

7skr[2] B 9OZ
N-[(2-methoxypyridin-4-yl)methyl]-2-[(1R)-1-(napht.. A 100.0
/97.8 10
/10 Q0QDZ2_SARS 3C-like proteinase

3e9s[1] B TTT
5-amino-2-methyl-N-[(1R)-1-naphthalen-1-ylethyl]be.. A 100.0
/100.0 10
/10 R1A_CVHSA Non-structural protein 3

7skq[1] E TTT
5-amino-2-methyl-N-[(1R)-1-naphthalen-1-ylethyl]be.. A 100.0
/97.8 10
/10 Q0QDZ2_SARS 3C-like proteinase

7bv2[1] K F86
[(2~{R},3~{S},4~{R},5~{R})-5-(4-azanylpyrrolo[2,1-.. A 100.0
/96.8 7
/7 R1AB_SARS2 RNA-directed RNA polymerase

7aap[2] M GE6
[[(2~{R},3~{S},4~{R},5~{R})-5-(3-aminocarbonyl-5-f.. A 100.0
/96.3 7
/7 R1AB_SARS2 Non-structural protein 12

7doi[2] O HCU
[(2R)-4-(2-azanyl-6-oxidanylidene-3H-purin-9-yl)-2.. A 100.0
/96.2 6
/6 R1AB_SARS2 RNA-directed RNA polymerase

7dfg[1] G 1RP
6-fluoro-3-oxo-4-(5-O-phosphono-beta-D-ribofuranos.. C 100.0
/96.4 7
/7 R1AB_SARS2 RNA-directed RNA polymerase

7dfh[1] N RVP
RIBAVIRIN MONOPHOSPHATE[20 atoms] A 100.0
/96.4 9
/9 R1AB_SARS2 RNA-directed RNA polymeras

7uob[1] L GTP
GUANOSINE-5'-TRIPHOSPHATE[32 atoms] A 100.0
/96.3 16
/16 R1AB_SARS2 RNA-directed RNA polymerase

7uob[4] M GTP
GUANOSINE-5'-TRIPHOSPHATE[32 atoms] A 100.0
/96.3 19
/19 R1AB_SARS2 RNA-directed RNA polymerase

7uob[2] N L2B
3'-DEOXYURIDINE-5'-MONOPHOSPHATE[19 atoms] A 100.0
/96.3 5
/5 R1AB_SARS2 RNA-directed RNA polymerase

7uoe[1] K CTP
CYTIDINE-5'-TRIPHOSPHATE[29 atoms] A 100.0
/96.3 14
/14 R1AB_SARS2 RNA-directed RNA polymerase

7uo4[1] G NWX
[[(2~{R},3~{S},4~{R},5~{R})-5-(4-azanylpyrrolo[2,1.. A 100.0
/96.3 17
/17 R1AB_SARS2 RNA-directed RNA polymerase

7cyq[1] L GDP
GUANOSINE-5'-DIPHOSPHATE[28 atoms] A 100.0
/96.3 8
/8 R1AB_SARS2 RNA-directed RNA polymerase

7ed5[1] J AT9
[[(2R,3R,4R,5R)-5-(2-azanyl-6-oxidanylidene-1H-pur.. A 100.0
/96.3 16
/16 R1AB_SARS2 RNA-directed RNA polymerase

7ed5[1] K AT9
[[(2R,3R,4R,5R)-5-(2-azanyl-6-oxidanylidene-1H-pur.. A 100.0
/96.3 11
/11 R1AB_SARS2 RNA-directed RNA polymerase

7ed5[1] N AT9
[[(2R,3R,4R,5R)-5-(2-azanyl-6-oxidanylidene-1H-pur.. A 100.0
/96.3 6
/6 R1AB_SARS2 RNA-directed RNA polymerase

7uo7[1] G ATP
ADENOSINE-5'-TRIPHOSPHATE[31 atoms] A 100.0
/96.3 14
/14 R1AB_SARS2 RNA-directed RNA polymerase

7uo9[1] J UTP
URIDINE 5'-TRIPHOSPHATE [29 atoms] A 100.0
/96.3 12
/12 R1AB_SARS2 RNA-directed RNA polymerase

8gwe[3] M GNP
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER[32 ato.. A 100.0
/96.3 13
/13 R1AB_SARS2 RNA-directed RNA polymerase

7d4f[1] G H3U
8-(3-(3-aminobenzamido)-4-methylbenzamido)naphthal.. D 100.0
/96.3 12
/12 R1AB_SARS2 RNA-directed RNA polymerase

7d4f[1] H H3U
8-(3-(3-aminobenzamido)-4-methylbenzamido)naphthal.. D 100.0
/96.3 12
/12 R1AB_SARS2 RNA-directed RNA polymerase

5sl0[1] G B0V
2-methoxy-~{N}-(2,4,6-trimethylphenyl)ethanamide[1.. A 100.0
/95.8 6
/6 R1AB_SARS2 Proofreading exoribonuclease nsp14

5sl0[1] H B0V
2-methoxy-~{N}-(2,4,6-trimethylphenyl)ethanamide[1.. A 100.0
/95.8 8
/8 R1AB_SARS2 Proofreading exoribonuclease nsp14

5sly[1] G LM6
1-(1-ethyl-1H-pyrazol-5-yl)-N-methylmethanamine[10.. A 100.0
/95.8 8
/8 R1AB_SARS2 Proofreading exoribonuclease nsp14

5sl6[1] G 60P
3-methylthiophene-2-carboxylic acid[9 atoms] A 100.0
/95.8 4
/4 R1AB_SARS2 Proofreading exoribonuclease nsp14

5sl6[1] H 60P
3-methylthiophene-2-carboxylic acid[9 atoms] A 100.0
/95.8 5
/5 R1AB_SARS2 Proofreading exoribonuclease nsp14

5sli[1] G LL0
2-(difluoromethoxy)benzene-1-sulfonamide[14 atoms].. A 100.0
/95.8 7
/7 R1AB_SARS2 Proofreading exoribonuclease nsp14

5sli[1] H LL0
2-(difluoromethoxy)benzene-1-sulfonamide[14 atoms].. A 100.0
/95.8 5
/5 R1AB_SARS2 Proofreading exoribonuclease nsp14

5sli[1] I LL0
2-(difluoromethoxy)benzene-1-sulfonamide[14 atoms].. A 100.0
/95.8 5
/5 R1AB_SARS2 Proofreading exoribonuclease nsp14

5sln[1] G LUY
~{N}-(2-phenylethyl)-1~{H}-benzimidazol-2-amine[18.. A 100.0
/95.8 7
/7 R1AB_SARS2 Proofreading exoribonuclease nsp14

5slx[1] G LMW
2-[(4-aminophenyl)(ethyl)amino]ethan-1-ol[13 atoms.. A 100.0
/95.8 7
/7 R1AB_SARS2 Proofreading exoribonuclease nsp14

5slx[1] H LMW
2-[(4-aminophenyl)(ethyl)amino]ethan-1-ol[13 atoms.. A 100.0
/95.8 6
/6 R1AB_SARS2 Proofreading exoribonuclease nsp14

5slo[1] G JJM
1-methyl-N-(3-methylphenyl)-1H-pyrazolo[3,4-d]pyri.. A 100.0
/95.8 11
/11 R1AB_SARS2 Proofreading exoribonuclease nsp14

5slp[1] G UWY
N-(1-ethyl-1H-pyrazol-4-yl)cyclopentanecarboxamide.. A 100.0
/95.7 6
/6 R1AB_SARS2 Proofreading exoribonuclease nsp14

5rl6[1] H LJA
N-[3-(carbamoylamino)phenyl]acetamide[14 atoms] B 100.0
/99.8 9
/9 R1AB_SARS2 Helicase

5slf[1] G LJA
N-[3-(carbamoylamino)phenyl]acetamide[14 atoms] A 100.0
/95.7 8
/8 R1AB_SARS2 Proofreading exoribonuclease nsp14

5slf[1] H LJA
N-[3-(carbamoylamino)phenyl]acetamide[14 atoms] A 100.0
/95.7 11
/11 R1AB_SARS2 Proofreading exoribonuclease nsp14

5rmk[1] H O2A
N-methyl-1H-indole-7-carboxamide[13 atoms] B 100.0
/99.8 3
/3 R1AB_SARS2 Helicase

5sl1[1] G O2A
N-methyl-1H-indole-7-carboxamide[13 atoms] A 87.5
/95.7 8
/8 R1AB_SARS2 Proofreading exoribonuclease nsp14

5sl2[1] G LFO
N,1-dimethyl-1H-indole-3-carboxamide[14 atoms] A 87.5
/95.7 8
/8 R1AB_SARS2 Proofreading exoribonuclease nsp14

5slj[1] G LKU
3-fluoro-N-(3-hydroxy-4-methylphenyl)benzamide[18 .. A 91.7
/95.7 12
/12 R1AB_SARS2 Proofreading exoribonuclease nsp14

5slm[1] G WN1
N-(2-fluorophenyl)-3-methoxybenzamide[18 atoms] A 90.9
/95.7 11
/11 R1AB_SARS2 Proofreading exoribonuclease nsp14

5sm4[1] G AWD
~{N}-(4-fluorophenyl)-4-methyl-piperazine-1-carbox.. A 90.0
/95.7 10
/10 R1AB_SARS2 Proofreading exoribonuclease nsp14

5sm9[1] G VZS
N-(2-methoxy-5-methylphenyl)-N'-4H-1,2,4-triazol-4.. A 91.7
/95.7 12
/12 R1AB_SARS2 Proofreading exoribonuclease nsp14

5sma[1] G NZD
4-methyl-N-phenylpiperazine-1-carboxamide[16 atoms.. A 90.0
/95.7 10
/10 R1AB_SARS2 Proofreading exoribonuclease nsp14

5smc[1] G LRF
N~2~-(4-cyano-3-methyl-1,2-thiazol-5-yl)-N~2~-meth.. A 100.0
/95.7 11
/11 R1AB_SARS2 Proofreading exoribonuclease nsp14

5smc[1] H LRF
N~2~-(4-cyano-3-methyl-1,2-thiazol-5-yl)-N~2~-meth.. A 87.5
/95.7 8
/8 R1AB_SARS2 Proofreading exoribonuclease nsp14

5sme[1] G I8D
(4-chlorophenyl)(thiomorpholin-4-yl)methanone[15 a.. A 100.0
/95.7 5
/5 R1AB_SARS2 Proofreading exoribonuclease nsp14

5rm9[1] H EJQ
~{N}-(4-fluorophenyl)-2-pyrrolidin-1-yl-ethanamide.. B 100.0
/99.8 10
/10 R1AB_SARS2 Helicase

5slv[1] G EJQ
~{N}-(4-fluorophenyl)-2-pyrrolidin-1-yl-ethanamide.. A 100.0
/95.6 9
/9 R1AB_SARS2 Proofreading exoribonuclease nsp14

5skw[1] B LF6
{(1R,2R)-2-[(Z)-(3-methyl-1,2,4-thiadiazol-5(2H)-y.. A 100.0
/95.6 8
/8 R1AB_SARS2 Proofreading exoribonuclease nsp14

5skx[1] B T6J
2-[(methylsulfonyl)methyl]-1H-benzimidazole[14 ato.. A 100.0
/95.6 7
/7 R1AB_SARS2 Proofreading exoribonuclease nsp14

5sky[1] G O2M
N-[(4-methyl-1,3-thiazol-2-yl)methyl]-1H-pyrazole-.. A 100.0
/95.6 10
/10 R1AB_SARS2 Proofreading exoribonuclease nsp14

5skz[1] G NVD
N-{[4-(dimethylamino)phenyl]methyl}-4H-1,2,4-triaz.. A 100.0
/95.6 6
/6 R1AB_SARS2 Proofreading exoribonuclease nsp14

5sl3[1] G LGR
2-[acetyl(methyl)amino]benzoic acid[14 atoms] A 70.0
/95.6 10
/10 R1AB_SARS2 Proofreading exoribonuclease nsp14

5sl4[1] G LHR
N-(1H-indazol-6-yl)acetamide[13 atoms] A 100.0
/95.6 8
/8 R1AB_SARS2 Proofreading exoribonuclease nsp14

5sl4[1] H LHR
N-(1H-indazol-6-yl)acetamide[13 atoms] A 100.0
/95.6 5
/5 R1AB_SARS2 Proofreading exoribonuclease nsp14

5sl5[1] G WNV
N,N,2,3-tetramethylbenzamide[13 atoms] A 87.5
/95.6 8
/8 R1AB_SARS2 Proofreading exoribonuclease nsp14

5sl7[1] G W0G
(3R)-1-(2-fluorophenyl)-3-(methylamino)pyrrolidin-.. A 83.3
/95.6 6
/6 R1AB_SARS2 Proofreading exoribonuclease nsp14

5sl8[1] G JGD
N,N-dimethylpyridin-4-amine[9 atoms] A 100.0
/95.6 3
/3 R1AB_SARS2 Proofreading exoribonuclease nsp14

5sl9[1] G O0S
N-{4-[(pyrimidin-2-yl)oxy]phenyl}acetamide[17 atom.. A 100.0
/95.6 8
/8 R1AB_SARS2 Proofreading exoribonuclease nsp14

5sla[1] G LJR
1-cyclohexyl-N-methylmethanesulfonamide[12 atoms] A 100.0
/95.6 5
/5 R1AB_SARS2 Proofreading exoribonuclease nsp14

5sla[1] H LJR
1-cyclohexyl-N-methylmethanesulfonamide[12 atoms] A 100.0
/95.6 8
/8 R1AB_SARS2 Proofreading exoribonuclease nsp14

5slb[1] G LJK
3-methyl-N-(2-methylbutan-2-yl)-1H-pyrazole-5-carb.. A 100.0
/95.6 9
/9 R1AB_SARS2 Proofreading exoribonuclease nsp14

5slc[1] G U1V
1-(4-fluoro-2-methylphenyl)methanesulfonamide[13 a.. A 100.0
/95.6 10
/10 R1AB_SARS2 Proofreading exoribonuclease nsp14

5sld[1] G LJ6
(2R)-3-(3,5-dimethyl-1,2-oxazol-4-yl)-N,N,2-trimet.. A 100.0
/95.6 7
/7 R1AB_SARS2 Proofreading exoribonuclease nsp14

5sle[1] G JGA
N-ethyl-N'-(5-methyl-1,2-oxazol-3-yl)urea[12 atoms.. A 100.0
/95.6 8
/8 R1AB_SARS2 Proofreading exoribonuclease nsp14

5sle[1] H JGA
N-ethyl-N'-(5-methyl-1,2-oxazol-3-yl)urea[12 atoms.. A 100.0
/95.6 7
/7 R1AB_SARS2 Proofreading exoribonuclease nsp14

5slg[1] G NZJ
1-(3-methylbenzene-1-carbonyl)piperidine-4-carboxa.. A 100.0
/95.6 11
/11 R1AB_SARS2 Proofreading exoribonuclease nsp14

5slk[1] G LKL
2-[(5-chloro-3-fluoropyridin-2-yl)(methyl)amino]et.. A 100.0
/95.6 9
/9 R1AB_SARS2 Proofreading exoribonuclease nsp14

5sll[1] G LK6
N-[(3R)-3-methyl-1,1-dioxo-1lambda~6~-thiolan-3-yl.. A 100.0
/95.6 6
/6 R1AB_SARS2 Proofreading exoribonuclease nsp14

5slq[1] G ELQ
[3,4-bis(fluoranyl)phenyl]-(4-methylpiperazin-1-yl.. A 85.7
/95.6 7
/7 R1AB_SARS2 Proofreading exoribonuclease nsp14

5slr[1] G LO6
2-(difluoromethoxy)-1-[(2R,6S)-2,6-dimethylmorphol.. A 100.0
/95.6 7
/7 R1AB_SARS2 Proofreading exoribonuclease nsp14

5sls[1] G SZE
4-(3-fluoranylpyridin-2-yl)-1-methyl-piperazin-2-o.. A 66.7
/95.6 9
/9 R1AB_SARS2 Proofreading exoribonuclease nsp14

5slt[1] G LNS
6-(methylcarbamoyl)pyridine-2-carboxylic acid[13 a.. A 75.0
/95.6 8
/8 R1AB_SARS2 Proofreading exoribonuclease nsp14

5slw[1] G U0V
2-fluoro-N-[2-(pyridin-4-yl)ethyl]benzamide[18 ato.. A 100.0
/95.6 9
/9 R1AB_SARS2 Proofreading exoribonuclease nsp14

5slw[1] H U0V
2-fluoro-N-[2-(pyridin-4-yl)ethyl]benzamide[18 ato.. A 100.0
/95.6 12
/12 R1AB_SARS2 Proofreading exoribonuclease nsp14

5slz[1] G LQP
2-(difluoromethoxy)-1-[(3aR,6aS)-hexahydrocyclopen.. A 100.0
/95.6 6
/6 R1AB_SARS2 Proofreading exoribonuclease nsp14

5sm0[1] G LQI
(1-benzofuran-2-yl)(4-methylpiperidin-1-yl)methano.. A 100.0
/95.6 10
/10 R1AB_SARS2 Proofreading exoribonuclease nsp14

5sm1[1] G WH1
N-methyl-N-[2-(pyridin-2-yl)ethyl]benzamide[18 ato.. A 88.9
/95.6 9
/9 R1AB_SARS2 Proofreading exoribonuclease nsp14

5sm2[1] G LQ3
(5S)-5-(difluoromethoxy)pyridin-2(5H)-one[11 atoms.. A 100.0
/95.6 8
/8 R1AB_SARS2 Proofreading exoribonuclease nsp14

5sm2[1] H LQ3
(5S)-5-(difluoromethoxy)pyridin-2(5H)-one[11 atoms.. A 100.0
/95.6 10
/10 R1AB_SARS2 Proofreading exoribonuclease nsp14

5sm3[1] G GT4
~{N}-(4-hydroxyphenyl)-2-methoxy-ethanamide[13 ato.. A 100.0
/95.6 9
/9 R1AB_SARS2 Proofreading exoribonuclease nsp14

5sm5[1] G S5J
2-[4-(2-methoxyphenyl)piperazin-1-yl]ethanenitrile.. A 100.0
/95.6 8
/8 R1AB_SARS2 Proofreading exoribonuclease nsp14

5sm6[1] G K1A
3-[(3,5-dimethyl-1,2-oxazol-4-yl)methyl]-5-methyl-.. A 100.0
/95.6 7
/7 R1AB_SARS2 Proofreading exoribonuclease nsp14

5sm7[1] G LPU
1-(methanesulfonyl)piperidin-4-ol[11 atoms] A 100.0
/95.6 8
/8 R1AB_SARS2 Proofreading exoribonuclease nsp14

5sm8[1] G WKA
N-(2,1,3-benzoxadiazol-4-yl)acetamide[13 atoms] A 100.0
/95.6 8
/8 R1AB_SARS2 Proofreading exoribonuclease nsp14

5smb[1] G LRR
1-(morpholin-4-yl)-4-phenylbutan-1-one[17 atoms] A 100.0
/95.6 10
/10 R1AB_SARS2 Proofreading exoribonuclease nsp14

5smd[1] G WKS
2,4-dimethyl-6-(piperazin-1-yl)pyrimidine[14 atoms.. A 100.0
/95.6 6
/6 R1AB_SARS2 Proofreading exoribonuclease nsp14

5smf[1] G K1S
N,N-diethyl-5-methyl[1,2,4]triazolo[1,5-a]pyrimidi.. A 100.0
/95.6 9
/9 R1AB_SARS2 Proofreading exoribonuclease nsp14

5smf[1] H K1S
N,N-diethyl-5-methyl[1,2,4]triazolo[1,5-a]pyrimidi.. A 100.0
/95.6 4
/4 R1AB_SARS2 Proofreading exoribonuclease nsp14

5smg[1] G LR9
3-amino-N-ethyl-N-methylbenzamide[13 atoms] A 100.0
/95.6 9
/9 R1AB_SARS2 Proofreading exoribonuclease nsp14

5smh[1] G 7ZC
1-(5-methoxy-1H-indol-3-yl)-N,N-dimethyl-methanami.. A 100.0
/95.6 7
/7 R1AB_SARS2 Proofreading exoribonuclease nsp14

5smi[1] G LQV
(2S)-N-(5-methylpyridin-2-yl)oxolane-2-carboxamide.. A 100.0
/95.6 8
/8 R1AB_SARS2 Proofreading exoribonuclease nsp14

5slh[1] G LLU
(2S)-2-(2-fluorophenoxy)propanoic acid[13 atoms] A 100.0
/95.6 4
/4 R1AB_SARS2 Proofreading exoribonuclease nsp14

7qif[1] B GTG
7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-GUANOSINE[52.. A 100.0
/95.6 14
/14 R1AB_SARS2 Proofreading exoribonuclease nsp14

5slu[1] G UX1
1-[(2-fluorophenyl)methyl]-N-methylcyclopropane-1-.. A 100.0
/95.6 6
/6 R1AB_SARS2 Proofreading exoribonuclease nsp14

5slu[1] H UX1
1-[(2-fluorophenyl)methyl]-N-methylcyclopropane-1-.. A 100.0
/95.6 11
/11 R1AB_SARS2 Proofreading exoribonuclease nsp14

5c8s[4] K SAH
S-ADENOSYL-L-HOMOCYSTEINE[26 atoms] B 100.0
/100.0 14
/14 R1AB_CVHSA Guanine-N7 methyltransferase

3.a³:asym_id for the contact molecule. 4.a⁴:asym_id for the template homologue. 5.identity[%]⁵:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon⁶:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.

METAL

7073 pdb_id contact mol homologue

a³ description a⁴ identity[%]⁵ Ncon⁶ description

1uk4[2] F ATO
CHLOROACETONE[1 atoms] A 100.0
/100.0 3
/3 R1AB_CVHSA 3C-like proteinase

2a5a[2] B CL
CHLORIDE ION[1 atoms] A 100.0
/100.0 2
/2 R1AB_CVHSA 3C-like peptidase

3e9s[1] D CL
CHLORIDE ION[1 atoms] A 100.0
/100.0 2
/2 R1A_CVHSA Non-structural protein 3

3e9s[1] E CL
CHLORIDE ION[1 atoms] A 100.0
/100.0 4
/4 R1A_CVHSA Non-structural protein 3

7k0h[1] C CL
CHLORIDE ION[1 atoms] A 100.0
/100.0 3
/3 R1A_CVHSA Replicase polyprotein 1a

7k0h[1] D CL
CHLORIDE ION[1 atoms] A 100.0
/100.0 1
/1 R1A_CVHSA Replicase polyprotein 1a

7lfv[1] FA CL
CHLORIDE ION[1 atoms] B 100.0
/100.0 1
/1 R1A_SARS papain-like protease

2fe8[6] E BR
BROMIDE ION[1 atoms] A 100.0
/100.0 4
/4 R1AB_CVHSA Replicase polyprotein 1ab

2fe8[6] F BR
BROMIDE ION[1 atoms] A 100.0
/100.0 3
/3 R1AB_CVHSA Replicase polyprotein 1ab

2fe8[6] G BR
BROMIDE ION[1 atoms] A 100.0
/100.0 4
/4 R1AB_CVHSA Replicase polyprotein 1ab

2z9g[2] B HG
MERCURY (II) ION[1 atoms] A 100.0
/100.0 4
/4 R1AB_CVHSA 3C-like proteinase

4m0w[1] D NA
SODIUM ION[1 atoms] A 80.0
/99.7 5
/5 R1A_CVHSA Replicase polyprotein 1a

5y3e[2] C NA
SODIUM ION[1 atoms] A 100.0
/100.0 4
/4 R1A_CVHSA Replicase polyprotein 1a

5y3e[2] D NA
SODIUM ION[1 atoms] A 100.0
/100.0 5
/5 R1A_CVHSA Replicase polyprotein 1a

5y3e[2] E NA
SODIUM ION[1 atoms] A 100.0
/100.0 6
/6 R1A_CVHSA Replicase polyprotein 1a

5y3e[2] F NA
SODIUM ION[1 atoms] A 100.0
/100.0 3
/3 R1A_CVHSA Replicase polyprotein 1a

5y3e[2] G NA
SODIUM ION[1 atoms] A 100.0
/100.0 7
/7 R1A_CVHSA Replicase polyprotein 1a

7lfv[1] DA NH4
AMMONIUM ION[1 atoms] B 100.0
/100.0 2
/2 R1A_SARS papain-like protease

2fe8[17] D ZN
ZINC ION[1 atoms] A 100.0
/100.0 4
/4 R1AB_CVHSA Replicase polyprotein 1ab

2z94[13] B ZN
ZINC ION[1 atoms] A 100.0
/100.0 2
/2 R1AB_CVHSA Replicase polyprotein 1ab

3e9s[5] C ZN
ZINC ION[1 atoms] A 100.0
/100.0 5
/5 R1A_CVHSA Non-structural protein 3

5c8s[13] G ZN
ZINC ION[1 atoms] B 100.0
/100.0 4
/4 R1AB_CVHSA Guanine-N7 methyltransferase

5c8s[13] H ZN
ZINC ION[1 atoms] B 100.0
/100.0 4
/4 R1AB_CVHSA Guanine-N7 methyltransferase

5c8s[13] I ZN
ZINC ION[1 atoms] B 100.0
/100.0 4
/4 R1AB_CVHSA Guanine-N7 methyltransferase

5c8t[4] H ZN
ZINC ION[1 atoms] B 100.0
/100.0 4
/4 R1AB_CVHSA Guanine-N7 methyltransferase

5c8t[4] I ZN
ZINC ION[1 atoms] B 100.0
/100.0 4
/4 R1AB_CVHSA Guanine-N7 methyltransferase

5nfy[4] I ZN
ZINC ION[1 atoms] A 100.0
/99.8 5
/5 Q1T6X8_CVHSA Polyprotein 1ab

5nfy[4] J ZN
ZINC ION[1 atoms] A 100.0
/99.8 4
/4 Q1T6X8_CVHSA Polyprotein 1ab

5nfy[4] K ZN
ZINC ION[1 atoms] A 100.0
/99.8 5
/5 Q1T6X8_CVHSA Polyprotein 1ab

5rl6[144] C ZN
ZINC ION[1 atoms] A 100.0
/99.8 4
/4 R1AB_SARS2 Helicase

5rl6[132] D ZN
ZINC ION[1 atoms] A 100.0
/99.8 4
/4 R1AB_SARS2 Helicase

5rl6[132] E ZN
ZINC ION[1 atoms] A 100.0
/99.8 4
/4 R1AB_SARS2 Helicase

5skw[62] E ZN
ZINC ION[1 atoms] A 100.0
/95.6 4
/4 R1AB_SARS2 Proofreading exoribonuclease nsp14

5skw[62] F ZN
ZINC ION[1 atoms] A 100.0
/95.6 4
/4 R1AB_SARS2 Proofreading exoribonuclease nsp14

5skw[62] G ZN
ZINC ION[1 atoms] A 80.0
/95.6 5
/5 R1AB_SARS2 Proofreading exoribonuclease nsp14

5tl6[7] E ZN
ZINC ION[1 atoms] A 100.0
/100.0 4
/4 R1AB_CVHSA Replicase polyprotein 1ab

5wwp[11] C ZN
ZINC ION[1 atoms] A 100.0
/72.3 4
/4 K0BWD0_9BETC ORF1ab

6nur[4] E ZN
ZINC ION[1 atoms] A 100.0
/100.0 4
/4 R1AB_CVHSA NSP12

6nur[4] F ZN
ZINC ION[1 atoms] A 100.0
/100.0 4
/4 R1AB_CVHSA NSP12

6xez[37] I ZN
ZINC ION[1 atoms] A 100.0
/96.3 4
/4 R1AB_SARS2 RNA-directed RNA polymerase

6xez[37] J ZN
ZINC ION[1 atoms] A 100.0
/96.3 6
/6 R1AB_SARS2 RNA-directed RNA polymerase

6xez[20] O ZN
ZINC ION[1 atoms] E 100.0
/99.8 6
/6 R1AB_SARS2 Helicase

6xez[22] P ZN
ZINC ION[1 atoms] E 100.0
/99.8 5
/5 R1AB_SARS2 Helicase

6xez[20] Q ZN
ZINC ION[1 atoms] E 100.0
/99.8 4
/4 R1AB_SARS2 Helicase

6xqb[8] G ZN
ZINC ION[1 atoms] A 100.0
/97.3 5
/5 R1AB_SARS2 RNA-directed RNA polymerase

6xqb[8] H ZN
ZINC ION[1 atoms] A 100.0
/97.3 4
/4 R1AB_SARS2 RNA-directed RNA polymerase

6yyt[6] I ZN
ZINC ION[1 atoms] A 100.0
/96.8 4
/4 R1AB_SARS2 nsp12

6yyt[6] J ZN
ZINC ION[1 atoms] A 100.0
/96.8 4
/4 R1AB_SARS2 nsp12

7bw4[1] E ZN
ZINC ION[1 atoms] A 100.0
/96.9 4
/4 R1AB_SARS2 RNA-directed RNA polymerase

7bw4[1] F ZN
ZINC ION[1 atoms] A 100.0
/96.9 5
/5 R1AB_SARS2 RNA-directed RNA polymerase

7ed5[1] G ZN
ZINC ION[1 atoms] A 100.0
/96.3 4
/4 R1AB_SARS2 RNA-directed RNA polymerase

7ed5[1] H ZN
ZINC ION[1 atoms] A 100.0
/96.3 5
/5 R1AB_SARS2 RNA-directed RNA polymerase

7fac[1] C ZN
ZINC ION[1 atoms] A 100.0
/100.0 7
/7 R1A_SARS Non-structural protein 2

7msw[2] B ZN
ZINC ION[1 atoms] A 100.0
/68.3 5
/5 R1AB_SARS2 Non-structural protein 2

7r2v[2] I ZN
ZINC ION[1 atoms] A 100.0
/95.0 2
/2 R1AB_SARS2 Proofreading exoribonuclease nsp14

7r2v[2] J ZN
ZINC ION[1 atoms] A 100.0
/95.0 4
/4 R1AB_SARS2 Proofreading exoribonuclease nsp14

7skq[1] H ZN
ZINC ION[1 atoms] A 100.0
/97.8 2
/2 Q0QDZ2_SARS 3C-like proteinase

7skr[2] E ZN
ZINC ION[1 atoms] A 66.7
/97.8 3
/3 Q0QDZ2_SARS 3C-like proteinase

8g6r[1] F ZN
ZINC ION[1 atoms] A 100.0
/60.5 4
/4 A0A0U2C263_9ALPC nsp12

8g6r[1] G ZN
ZINC ION[1 atoms] A 100.0
/60.5 4
/4 A0A0U2C263_9ALPC nsp12

5e6j[1] H NI
NICKEL (II) ION[1 atoms] A 50.0
/99.1 2
/2 R1AB_CVHSA Replicase polyprotein 1ab

5c8s[16] J MG
MAGNESIUM ION[1 atoms] B 100.0
/100.0 3
/3 R1AB_CVHSA Guanine-N7 methyltransferase

6xez[22] K MG
MAGNESIUM ION[1 atoms] A 100.0
/96.3 3
/3 R1AB_SARS2 RNA-directed RNA polymerase

6xez[19] T MG
MAGNESIUM ION[1 atoms] E 100.0
/99.8 3
/3 R1AB_SARS2 Helicase

6xqb[20] I MG
MAGNESIUM ION[1 atoms] A 100.0
/97.3 4
/4 R1AB_SARS2 RNA-directed RNA polymerase

7ed5[2] I MG
MAGNESIUM ION[1 atoms] A 100.0
/96.3 2
/2 R1AB_SARS2 RNA-directed RNA polymerase

7ed5[1] L MG
MAGNESIUM ION[1 atoms] A 100.0
/96.3 4
/4 R1AB_SARS2 RNA-directed RNA polymerase

7egq[2] HA MG
MAGNESIUM ION[1 atoms] H 100.0
/95.0 4
/4 R1AB_SARS2 Proofreading exoribonuclease

8gwe[1] T MG
MAGNESIUM ION[1 atoms] A 100.0
/96.3 2
/2 R1AB_SARS2 RNA-directed RNA polymerase

7thm[3] H MN
MANGANESE (II) ION[1 atoms] A 100.0
/96.9 3
/3 R1AB_SARS2 RNA-directed RNA polymerase

7lcp[2] D CA
CALCIUM ION[1 atoms] A 100.0
/100.0 3
/3 R1AB_SARS 3C-like proteinase

7lcp[2] E CA
CALCIUM ION[1 atoms] A 100.0
/100.0 3
/3 R1AB_SARS 3C-like proteinase

7n0b[2] G CA
CALCIUM ION[1 atoms] B 100.0
/94.9 3
/3 R1AB_SARS2 Proofreading exoribonuclease

3.a³:asym_id for the contact molecule. 4.a⁴:asym_id for the template homologue. 5.identity[%]⁵:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon⁶:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.

HOMO

7073 pdb_id contact mol homologue

a³ description a⁴ identity[%]⁵ Ncon⁶ description

1uj1[208] B R1AB_CVHSA 3C-like proteinase[302 aa] A 100.0
/100.0 29
/29 R1AB_CVHSA 3C-like proteinase

2gtb[2] A R1AB_CVHSA 3C-like proteinase[299 aa] A 100.0
/100.0 2
/2 R1AB_CVHSA 3C-like proteinase

2z3e[2] A R1AB_CVHSA Replicase polyprotein 1ab (pp1ab)[306 aa] A 100.0
/100.0 5
/5 R1AB_CVHSA Replicase polyprotein 1ab (pp1ab)

3iwm[4] A R1A_CVHSA 3C-like proteinase[301 aa] A 100.0
/100.0 4
/4 R1A_CVHSA 3C-like proteinase

3iwm[8] B R1A_CVHSA 3C-like proteinase[301 aa] A 100.0
/100.0 1
/1 R1A_CVHSA 3C-like proteinase

3iwm[8] C R1A_CVHSA 3C-like proteinase[300 aa] A 100.0
/100.0 72
/72 R1A_CVHSA 3C-like proteinase

3iwm[8] D R1A_CVHSA 3C-like proteinase[300 aa] A 100.0
/100.0 3
/3 R1A_CVHSA 3C-like proteinase

3iwm[8] D R1A_CVHSA 3C-like proteinase[300 aa] A 100.0
/100.0 5
/5 R1A_CVHSA 3C-like proteinase

6xez[18] F R1AB_SARS2 Helicase[596 aa] E 100.0
/99.8 4
/4 R1AB_SARS2 Helicase

6xez[8] E R1AB_SARS2 Helicase[596 aa] F 100.0
/99.8 5
/5 R1AB_SARS2 Helicase

7cxm[2] H R1AB_SARS2 Helicase[596 aa] I 100.0
/99.8 3
/3 R1AB_SARS2 Helicase

7cyq[10] G R1AB_SARS2 Helicase[585 aa] H 100.0
/99.8 1
/1 R1AB_SARS2 Helicase

7nio[2] B R1AB_SARS2 SARS-CoV-2 helicase NSP13[585 aa] A 100.0
/99.8 14
/14 R1AB_SARS2 SARS-CoV-2 helicase NSP13

7rdx[3] E R1AB_SARS2 Helicase[590 aa] F 100.0
/99.8 6
/6 R1AB_SARS2 Helicase

7re0[1] F R1AB_SARS2 Helicase[590 aa] E 100.0
/99.8 6
/6 R1AB_SARS2 Helicase

2h85[12] A Q6VA80_CVHSA Putative orf1ab polyprotein[347 aa] A 100.0
/99.4 28
/28 Q6VA80_CVHSA Putative orf1ab polyprotein

2h85[6] A Q6VA80_CVHSA Putative orf1ab polyprotein[347 aa] A 96.3
/99.4 27
/27 Q6VA80_CVHSA Putative orf1ab polyprotein

2h85[6] A Q6VA80_CVHSA Putative orf1ab polyprotein[347 aa] A 100.0
/99.4 15
/16 Q6VA80_CVHSA Putative orf1ab polyprotein

2rhb[6] B R1AB_CVHSA Uridylate-specific endoribonuclease[346 aa] A 100.0
/99.7 25
/25 R1AB_CVHSA Uridylate-specific endoribonuclease

2rhb[6] E R1AB_CVHSA Uridylate-specific endoribonuclease[346 aa] A 100.0
/99.7 16
/17 R1AB_CVHSA Uridylate-specific endoribonuclease

2fe8[6] B R1AB_CVHSA Replicase polyprotein 1ab[314 aa] A 100.0
/100.0 23
/23 R1AB_CVHSA Replicase polyprotein 1ab

2fe8[6] B R1AB_CVHSA Replicase polyprotein 1ab[314 aa] A 100.0
/100.0 8
/9 R1AB_CVHSA Replicase polyprotein 1ab

2fe8[7] C R1AB_CVHSA Replicase polyprotein 1ab[313 aa] A 100.0
/100.0 18
/18 R1AB_CVHSA Replicase polyprotein 1ab

7skq[1] B Q0QDZ2_SARS 3C-like proteinase[304 aa] A 100.0
/97.8 20
/20 Q0QDZ2_SARS 3C-like proteinase

7skr[2] A Q0QDZ2_SARS 3C-like proteinase[314 aa] A 100.0
/97.8 27
/27 Q0QDZ2_SARS 3C-like proteinase

7egq[2] I R1AB_SARS2 RNA-directed RNA polymerase[926 aa] A 75.0
/96.3 4
/4 R1AB_SARS2 RNA-directed RNA polymerase

7re3[2] J R1AB_SARS2 RNA-directed RNA polymerase[927 aa] A 77.8
/96.3 9
/9 R1AB_SARS2 RNA-directed RNA polymerase

7n0d[2] D R1AB_SARS2 Proofreading exoribonuclease[512 aa] B 77.8
/94.7 9
/9 R1AB_SARS2 Proofreading exoribonuclease

7n0d[4] K R1AB_SARS2 Proofreading exoribonuclease[512 aa] B 100.0
/94.7 14
/14 R1AB_SARS2 Proofreading exoribonuclease

7n0d[2] B R1AB_SARS2 Proofreading exoribonuclease[512 aa] D 100.0
/94.7 11
/11 R1AB_SARS2 Proofreading exoribonuclease

3.a³:asym_id for the contact molecule. 4.a⁴:asym_id for the template homologue. 5.identity[%]⁵:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon⁶:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.

PRECIPITANT

7073 pdb_id contact mol homologue

a³ description a⁴ identity[%]⁵ Ncon⁶ description

2a5a[15] D EDO
1,2-ETHANEDIOL[4 atoms] A 100.0
/100.0 5
/5 R1AB_CVHSA 3C-like peptidase

3vb3[1] D EDO
1,2-ETHANEDIOL[4 atoms] A 100.0
/100.0 5
/5 R1A_CVHSA 3C-like proteinase

3vb3[5] E EDO
1,2-ETHANEDIOL[4 atoms] A 100.0
/100.0 4
/4 R1A_CVHSA 3C-like proteinase

3vb3[1] F EDO
1,2-ETHANEDIOL[4 atoms] A 100.0
/100.0 6
/6 R1A_CVHSA 3C-like proteinase

3vb3[3] G EDO
1,2-ETHANEDIOL[4 atoms] A 100.0
/100.0 5
/5 R1A_CVHSA 3C-like proteinase

3vb3[3] H EDO
1,2-ETHANEDIOL[4 atoms] A 100.0
/100.0 6
/6 R1A_CVHSA 3C-like proteinase

3vb3[1] I EDO
1,2-ETHANEDIOL[4 atoms] B 100.0
/100.0 3
/3 R1A_CVHSA 3C-like proteinase

3vb4[1] G EDO
1,2-ETHANEDIOL[4 atoms] A 100.0
/100.0 2
/2 R1A_CVHSA 3C-like proteinase

3vb4[2] J EDO
1,2-ETHANEDIOL[4 atoms] A 100.0
/100.0 2
/2 R1A_CVHSA 3C-like proteinase

3vb4[3] I EDO
1,2-ETHANEDIOL[4 atoms] B 100.0
/100.0 2
/2 R1A_CVHSA 3C-like proteinase

3vb4[1] L EDO
1,2-ETHANEDIOL[4 atoms] B 100.0
/100.0 5
/5 R1A_CVHSA 3C-like proteinase

3vb7[1] G EDO
1,2-ETHANEDIOL[4 atoms] B 100.0
/100.0 5
/5 R1A_CVHSA 3C-like proteinase

7lcp[4] C EDO
1,2-ETHANEDIOL[4 atoms] A 100.0
/100.0 2
/2 R1AB_SARS 3C-like proteinase

7lcq[2] B EDO
1,2-ETHANEDIOL[4 atoms] A 100.0
/100.0 7
/7 R1AB_SARS 3C-like proteinase

7lcq[2] C EDO
1,2-ETHANEDIOL[4 atoms] A 100.0
/100.0 1
/1 R1AB_SARS 3C-like proteinase

7lfv[1] F EDO
1,2-ETHANEDIOL[4 atoms] A 100.0
/100.0 4
/4 R1A_SARS papain-like protease

7lfv[1] G EDO
1,2-ETHANEDIOL[4 atoms] A 100.0
/100.0 3
/3 R1A_SARS papain-like protease

7lfv[1] H EDO
1,2-ETHANEDIOL[4 atoms] A 100.0
/100.0 4
/4 R1A_SARS papain-like protease

7lfv[1] I EDO
1,2-ETHANEDIOL[4 atoms] A 100.0
/100.0 3
/3 R1A_SARS papain-like protease

7lfv[1] J EDO
1,2-ETHANEDIOL[4 atoms] A 100.0
/100.0 4
/4 R1A_SARS papain-like protease

7lfv[1] K EDO
1,2-ETHANEDIOL[4 atoms] A 100.0
/100.0 4
/4 R1A_SARS papain-like protease

7lfv[1] L EDO
1,2-ETHANEDIOL[4 atoms] A 100.0
/100.0 3
/3 R1A_SARS papain-like protease

7lfv[1] M EDO
1,2-ETHANEDIOL[4 atoms] A 100.0
/100.0 5
/5 R1A_SARS papain-like protease

7lfv[1] N EDO
1,2-ETHANEDIOL[4 atoms] A 100.0
/100.0 4
/4 R1A_SARS papain-like protease

7lfv[2] O EDO
1,2-ETHANEDIOL[4 atoms] A 100.0
/100.0 4
/4 R1A_SARS papain-like protease

7lfv[2] Q EDO
1,2-ETHANEDIOL[4 atoms] A 100.0
/100.0 5
/5 R1A_SARS papain-like protease

7lfv[1] BA EDO
1,2-ETHANEDIOL[4 atoms] B 100.0
/100.0 4
/4 R1A_SARS papain-like protease

7lfv[1] T EDO
1,2-ETHANEDIOL[4 atoms] B 100.0
/100.0 2
/2 R1A_SARS papain-like protease

7lfv[1] V EDO
1,2-ETHANEDIOL[4 atoms] B 100.0
/100.0 2
/2 R1A_SARS papain-like protease

7lfv[1] X EDO
1,2-ETHANEDIOL[4 atoms] B 100.0
/100.0 3
/3 R1A_SARS papain-like protease

7lfv[2] Y EDO
1,2-ETHANEDIOL[4 atoms] B 100.0
/100.0 3
/3 R1A_SARS papain-like protease

2a5i[14] D GOL
GLYCEROL[6 atoms] A 100.0
/100.0 5
/5 R1AB_CVHSA 3C-like peptidase

2z3e[2] D GOL
GLYCEROL[6 atoms] A 100.0
/100.0 4
/4 R1AB_CVHSA Replicase polyprotein 1ab (pp1ab)

3vb4[1] K GOL
GLYCEROL[6 atoms] B 100.0
/100.0 4
/4 R1A_CVHSA 3C-like proteinase

3vb7[1] H GOL
GLYCEROL[6 atoms] B 100.0
/100.0 6
/6 R1A_CVHSA 3C-like proteinase

4m0w[1] G GOL
GLYCEROL[6 atoms] A 100.0
/99.7 5
/5 R1A_CVHSA Replicase polyprotein 1a

4m0w[3] H GOL
GLYCEROL[6 atoms] A 100.0
/99.7 6
/6 R1A_CVHSA Replicase polyprotein 1a

4ow0[1] F GOL
GLYCEROL[6 atoms] A 100.0
/100.0 3
/3 R1A_CVHSA papain-like protease

5y3e[2] I GOL
GLYCEROL[6 atoms] A 100.0
/100.0 6
/6 R1A_CVHSA Replicase polyprotein 1a

5y3e[1] J GOL
GLYCEROL[6 atoms] A 100.0
/100.0 5
/5 R1A_CVHSA Replicase polyprotein 1a

7lmg[8] B GOL
GLYCEROL[6 atoms] A 100.0
/100.0 8
/8 R1A_SARS 3C-like proteinase

7lmg[4] D GOL
GLYCEROL[6 atoms] A 100.0
/100.0 1
/1 R1A_SARS 3C-like proteinase

7lmh[6] D GOL
GLYCEROL[6 atoms] A 100.0
/100.0 6
/6 R1A_SARS 3C-like proteinase

2fe8[7] H SO4
SULFATE ION[5 atoms] A 100.0
/100.0 4
/4 R1AB_CVHSA Replicase polyprotein 1ab

2v6n[2] D SO4
SULFATE ION[5 atoms] A 100.0
/100.0 2
/2 R1AB_CVHSA REPLICASE POLYPROTEIN 1AB

5tl6[1] F SO4
SULFATE ION[5 atoms] A 100.0
/100.0 3
/3 R1AB_CVHSA Replicase polyprotein 1ab

5wwp[1] F SO4
SULFATE ION[5 atoms] A 100.0
/72.3 5
/5 K0BWD0_9BETC ORF1ab

7lfv[1] R SO4
SULFATE ION[5 atoms] A 100.0
/100.0 2
/2 R1A_SARS papain-like protease

7lfv[1] S SO4
SULFATE ION[5 atoms] A 100.0
/100.0 4
/4 R1A_SARS papain-like protease

2gt7[1] C MES
2-(N-MORPHOLINO)-ETHANESULFONIC ACID[12 atoms] B 100.0
/100.0 1
/1 R1AB_CVHSA 3C-like proteinase

2v6n[8] C MES
2-(N-MORPHOLINO)-ETHANESULFONIC ACID[12 atoms] A 100.0
/100.0 5
/5 R1AB_CVHSA REPLICASE POLYPROTEIN 1AB

6w79[4] E MES
2-(N-MORPHOLINO)-ETHANESULFONIC ACID[12 atoms] A 100.0
/100.0 3
/3 Main protease

2gtb[2] C ACY
ACETIC ACID[4 atoms] A 100.0
/100.0 5
/5 R1AB_CVHSA 3C-like proteinase

2z9g[2] C BNZ
BENZENE[6 atoms] A 100.0
/100.0 7
/7 R1AB_CVHSA 3C-like proteinase

2z9j[2] E DTZ
zinc(II)hydrogensulfide[3 atoms] A 100.0
/100.0 4
/4 R1AB_CVHSA 3C-like proteinase

2z9k[2] E DOZ
(dimethylamino)(hydroxy)zinc'[5 atoms] A 100.0
/100.0 5
/5 R1AB_CVHSA 3C-like proteinase

2z9l[2] E DAZ
diaminozinc[3 atoms] A 100.0
/100.0 2
/2 R1AB_CVHSA 3C-like proteinase

3snd[1] E MRD
(4R)-2-METHYLPENTANE-2,4-DIOL[8 atoms] A 100.0
/100.0 6
/6 R1A_CVHSA 3C-like proteinase

5y3q[1] C BME
BETA-MERCAPTOETHANOL[4 atoms] A 100.0
/100.0 6
/6 R1A_CVHSA Replicase polyprotein 1a

7k0h[1] G PG4
TETRAETHYLENE GLYCOL[13 atoms] B 100.0
/100.0 10
/10 R1A_CVHSA Replicase polyprotein 1a

6xez[18] S AF3
ALUMINUM FLUORIDE[4 atoms] E 100.0
/99.8 7
/7 R1AB_SARS2 Helicase

5e6j[1] G ACT
ACETATE ION[4 atoms] A 100.0
/99.1 6
/6 R1AB_CVHSA Replicase polyprotein 1ab

2vj1[1] C DMS
DIMETHYL SULFOXIDE[4 atoms] A 100.0
/100.0 1
/1 A7J8L3_CVHSA SARS CORONAVIRUS MAIN PROTEINASE

2vj1[2] E DMS
DIMETHYL SULFOXIDE[4 atoms] A 100.0
/100.0 3
/3 A7J8L3_CVHSA SARS CORONAVIRUS MAIN PROTEINASE

2vj1[1] F DMS
DIMETHYL SULFOXIDE[4 atoms] B 100.0
/100.0 3
/3 A7J8L3_CVHSA SARS CORONAVIRUS MAIN PROTEINASE

2z9j[6] C DMS
DIMETHYL SULFOXIDE[4 atoms] A 100.0
/100.0 5
/5 R1AB_CVHSA 3C-like proteinase

2z9j[6] D DMS
DIMETHYL SULFOXIDE[4 atoms] A 100.0
/100.0 9
/9 R1AB_CVHSA 3C-like proteinase

2z9j[6] G DMS
DIMETHYL SULFOXIDE[4 atoms] A 100.0
/100.0 1
/1 R1AB_CVHSA 3C-like proteinase

3snc[14] C DMS
DIMETHYL SULFOXIDE[4 atoms] A 100.0
/100.0 2
/2 R1A_CVHSA 3C-like proteinase

3tiu[2] B DMS
DIMETHYL SULFOXIDE[4 atoms] A 100.0
/100.0 6
/6 R1A_CVHSA SARS coronavirus main protease

3v3m[4] C DMS
DIMETHYL SULFOXIDE[4 atoms] A 100.0
/100.0 8
/8 R1A_CVHSA 3C-like proteinase

4ovz[2] E DMS
DIMETHYL SULFOXIDE[4 atoms] A 100.0
/100.0 4
/4 R1A_CVHSA Papain-like proteinase

4ow0[1] G DMS
DIMETHYL SULFOXIDE[4 atoms] A 100.0
/100.0 5
/5 R1A_CVHSA papain-like protease

6y7m[2] C DMS
DIMETHYL SULFOXIDE[4 atoms] A 100.0
/100.0 5
/5 R1A_SARS 3C-like proteinase

7rc1[2] D DMS
DIMETHYL SULFOXIDE[4 atoms] A 100.0
/100.0 8
/8 R1A_SARS 3C-like proteinase

7rc1[2] E DMS
DIMETHYL SULFOXIDE[4 atoms] A 100.0
/100.0 5
/5 R1A_SARS 3C-like proteinase

7rc1[2] F DMS
DIMETHYL SULFOXIDE[4 atoms] A 100.0
/100.0 2
/2 R1A_SARS 3C-like proteinase

7rc1[2] G DMS
DIMETHYL SULFOXIDE[4 atoms] A 100.0
/100.0 3
/3 R1A_SARS 3C-like proteinase

7rc1[2] G DMS
DIMETHYL SULFOXIDE[4 atoms] A 100.0
/100.0 1
/1 R1A_SARS 3C-like proteinase

7skr[2] C DMS
DIMETHYL SULFOXIDE[4 atoms] A 100.0
/97.8 2
/2 Q0QDZ2_SARS 3C-like proteinase

7aap[2] K POP
PYROPHOSPHATE 2-[9 atoms] A 100.0
/96.3 7
/7 R1AB_SARS2 Non-structural protein 12

7bv2[5] H POP
PYROPHOSPHATE 2-[9 atoms] A 100.0
/96.8 3
/3 R1AB_SARS2 RNA-directed RNA polymerase

7dfg[4] M POP
PYROPHOSPHATE 2-[9 atoms] C 100.0
/96.4 7
/7 R1AB_SARS2 RNA-directed RNA polymerase

5rl6[216] F PO4
PHOSPHATE ION[5 atoms] A 100.0
/99.8 7
/7 R1AB_SARS2 Helicase

5skw[62] C PO4
PHOSPHATE ION[5 atoms] A 100.0
/95.6 5
/5 R1AB_SARS2 Proofreading exoribonuclease nsp14

5skw[62] D PO4
PHOSPHATE ION[5 atoms] A 100.0
/95.6 5
/5 R1AB_SARS2 Proofreading exoribonuclease nsp14

7r2v[1] E TRS
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL[8 atoms] A 100.0
/95.0 2
/2 R1AB_SARS2 Proofreading exoribonuclease nsp14

3vb3[2] C PEG
DI(HYDROXYETHYL)ETHER[7 atoms] A 100.0
/100.0 4
/4 R1A_CVHSA 3C-like proteinase

5nfy[2] L PEG
DI(HYDROXYETHYL)ETHER[7 atoms] A 100.0
/99.8 2
/2 Q1T6X8_CVHSA Polyprotein 1ab

7lmg[4] E PEG
DI(HYDROXYETHYL)ETHER[7 atoms] A 100.0
/100.0 2
/2 R1A_SARS 3C-like proteinase

7lmg[4] E PEG
DI(HYDROXYETHYL)ETHER[7 atoms] A 100.0
/100.0 1
/1 R1A_SARS 3C-like proteinase

7lmj[2] G PEG
DI(HYDROXYETHYL)ETHER[7 atoms] A 100.0
/100.0 3
/3 R1A_SARS 3C-like proteinase

7r2v[2] D PEG
DI(HYDROXYETHYL)ETHER[7 atoms] A 100.0
/95.0 4
/4 R1AB_SARS2 Proofreading exoribonuclease nsp14

7r2v[1] K PEG
DI(HYDROXYETHYL)ETHER[7 atoms] B 100.0
/95.0 3
/3 R1AB_SARS2 Proofreading exoribonuclease nsp14

7r2v[1] N PEG
DI(HYDROXYETHYL)ETHER[7 atoms] B 100.0
/95.0 1
/1 R1AB_SARS2 Proofreading exoribonuclease nsp14

3.a³:asym_id for the contact molecule. 4.a⁴:asym_id for the template homologue. 5.identity[%]⁵:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon⁶:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.

MONOMER
7073
	pdb_id	a¹	identity[%]²	description
	8gwe	A	96.3	R1AB_SARS2 RNA-directed RNA polymerase
	7egq	R	99.8	R1AB_SARS2 Helicase
	5c8u	D	100.0	R1AB_CVHSA Guanine-N7 methyltransferase
	7fac	A	100.0	R1A_SARS Non-structural protein 2
	7msw	A	68.3	R1AB_SARS2 Non-structural protein 2
	2h85	A	99.4	Q6VA80_CVHSA Putative orf1ab polyprotein
	4m0w	A	99.7	R1A_CVHSA Replicase polyprotein 1a
	5b6o	A	99.7	R1AB_CVHSA 3C-like proteinase
	1.a¹:asym_id for the homologue. 2.identity[%]²:sequence identity between the query and the homologue.

Contact Molecules for Homologous Proteins

Summary Bars[0.0 %]

UniProt Feature Tables [P0C6X7(R1AB_SARS)]