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seq_id(%): [0] [30] [40] [50] [60] [70] [80] [90] [95] [100] | ![]() [show] [download] [help] |
PID | QueryLength | Homolgous Sequence in PDB | UniProt Query | TITLE |
26061 | 4382 | 0 | P0C6U8(R1A_SARS) | RecName: Full=Replicase polyprotein 1a; Short=pp1a;AltName: Full=ORF1a polyprotein;Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=Leader protein;Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog;Contains: RecName: Full=Non-structural protein 3; Short=nsp3; EC=3.4.19.12; EC=3.4.22.-; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinase; Short=PL-PRO;Contains: RecName: Full=Non-structural protein 4; Short=nsp4;Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; EC=3.4.22.69; AltName: Full=Main protease; Short=Mpro; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=SARS coronavirus main proteinase;Contains: RecName: Full=Non-structural protein 6; Short=nsp6;Contains: RecName: Full=Non-structural protein 7; Short=nsp7;Contains: RecName: Full=Non-structural protein 8; Short=nsp8;Contains: RecName: Full=Non-structural protein 9; Short=nsp9;Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL;Contains: RecName: Full=Non-structural protein 11; Short=nsp11; |
QUERYSEQ |
MESLVLGVNEKTHVQLSLPVLQVRDVLVRGFGDSVEEALSEAREHLKNGTCGLVELEKGVLPQLEQPYVFIKRSDALSTNHGHKVVELVAEMDGIQYGRSGITLGVLVPHVGETPIAYRNVLLRKNGNKGAGGHSYGIDLKSYDLGDELG TDPIEDYEQNWNTKHGSGALRELTRELNGGAVTRYVDNNFCGPDGYPLDCIKDFLARAGKSMCTLSEQLDYIESKRGVYCCRDHEHEIAWFTERSDKSYEHQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRI RSVYPVASPQECNNMHLSTLMKCNHCDEVSWQTCDFLKATCEHCGTENLVIEGPTTCGYLPTNAVVKMPCPACQDPEIGPEHSVADYHNHSNIETRLRKGGRTRCFGGCVFAYVGCYNKRAYWVPRASADIGSGHTGITGDNVETLNEDL LEILSRERVNINIVGDFHLNEEVAIILASFSASTSAFIDTIKSLDYKSFKTIVESCGNYKVTKGKPVKGAWNIGQQRSVLTPLCGFPSQAAGVIRSIFARTLDAANHSIPDLQRAAVTILDGISEQSLRLVDAMVYTSDLLTNSVIIMAY VTGGLVQQTSQWLSNLLGTTVEKLRPIFEWIEAKLSAGVEFLKDAWEILKFLITGVFDIVKGQIQVASDNIKDCVKCFIDVVNKALEMCIDQVTIAGAKLRSLNLGEVFIAQSKGLYRQCIRGKEQLQLLMPLKAPKEVTFLEGDSHDTV LTSEEVVLKNGELEALETPVDSFTNGAIVGTPVCVNGLMLLEIKDKEQYCALSPGLLATNNVFRLKGGAPIKGVTFGEDTVWEVQGYKNVRITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLTNMGIDLDE WSVATFYLFDDAGEENFSSRMYCSFYPPDEEEEDDAECEEEEIDETCEHEYGTEDDYQGLPLEFGASAETVRVEEEEEEDWLDDTTEQSEIEPEPEPTPEEPVNQFTGYLKLTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVA GALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNLAKKCLHVVGPNLNAGEDIQLLKAAYENFNSQDILLAPLLSAGIFGAKPLQSLQVCVQTVRTQVYIAVNDKALYEQVVMDYLDNLKPRVEAPKQEEPPNTEDSKTEEKSVVQK PVDVKPKIKACIDEVTTTLEETKFLTNKLLLFADINGKLYHDSQNMLRGEDMSFLEKDAPYMVGDVITSGDITCVVIPSKKAGGTTEMLSRALKKVPVDEYITTYPGQGCAGYTLEEAKTALKKCKSAFYVLPSEAPNAKEEILGTVSWN LREMLAHAEETRKLMPICMDVRAIMATIQRKYKGIKIQEGIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGFNLEEAARCMRSLKAPAVVSVSSPDAVTTYNGYLTSSSKTSEEHFVETVSLAGSYRDWSYSGQRTELG VEFLKRGDKIVYHTLESPVEFHLDGEVLSLDKLKSLLSLREVKTIKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNN CYLSSVLLALQQLEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKTGVSIPCVCGRDATQYLVQQESSFVMMSAPPAEYKLQQGTFLC ANEYTGNYQCGHYTHITAKETLYRIDGAHLTKMSEYKGPVTDVFYKETSYTTTIKPVSYKLDGVTYTEIEPKLDGYYKKDNAYYTEQPIDLVPTQPLPNASFDNFKLTCSNTKFADDLNQMTGFTKPASRELSVTFFPDLNGDVVAIDYR HYSASFKKGAKLLHKPIVWHINQATTKTTFKPNTWCLRCLWSTKPVDTSNSFEVLAVEDTQGMDNLACESQQPTSEEVVENPTIQKEVIECDVKTTEVVGNVILKPSDEGVKVTQELGHEDLMAAYVENTSITIKKPNELSLALGLKTIA THGIAAINSVPWSKILAYVKPFLGQAAITTSNCAKRLAQRVFNNYMPYVFTLLFQLCTFTKSTNSRIRASLPTTIAKNSVKSVAKLCLDAGINYVKSPKFSKLFTIAMWLLLLSICLGSLICVTAAFGVLLSNFGAPSYCNGVRELYLNS SNVTTMDFCEGSFPCSICLSGLDSLDSYPALETIQVTISSYKLDLTILGLAAEWVLAYMLFTKFFYLLGLSAIMQVFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYIWKSYVHIMDGCTSSTCMMCYKRNRATRVEC TTIVNGMKRSFYVYANGGRGFCKTHNWNCLNCDTFCTGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVAVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDESASKSASVYYSQLMCQPILLLD QALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSE QLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLKGGKIVSTCFKLMLKATLLCVLAALVCYIVMPVHTLSIHDGYTNEIIGYKAIQDGVTRDIISTDDCFANKHAGFDAWFSQRGGSYKNDKSCPVVAAIITREIGFIVPGLPGTV LRAINGDFLHFLPRVFSAVGNICYTPSKLIEYSDFATSACVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDAEYCRHGTCERSEVGICLSTSGRWVLNNEHYRALSGVFCGVDA MNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRVFGEYNHVVAANALLFLMSFTILCLVPAYSFLPGVYSVFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWITAIYVFCISLKHCHWFFNNYLRKRVMFNGVTFS TFEEAALCTFLLNKEMYLKLRSETLLPLTQYNRYLALYNKYKYFSGALDTTSYREAACCHLAKALNDFSNSGADVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLIR KSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYA AVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQGKFKKIVKGTHHWMLLTFLTSLLILVQSTQWSLFFFVYENAFLPFTLGIMAIAA CAMLLVKHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRIMTWLELADTSLSGYRLKDCVMYASALVLLILMTARTVYDDAARRVWTLMNVITLVYKVYYGNALDQAISMWALVISVTSNYSGVVTTIMFLARAIVFVCVEYYPLLFITG NTLQCIMLVYCFLGYCCCCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQG AVDINRLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVV VPDYGTYKNTCDGNTFTYASALWEIQQVVDADSKIVQLSEINMDNSPNLAWPLIVTALRANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNNSKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGP KVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVC GMWKGYGCSCDQLREPLMQSADASTFLNGFAV |
4382 |
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region | name | description |
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1-4382 | CHAIN | /note="Replicase polyprotein 1a" /id="PRO_0000338254" |
![]() ![]() |
1-180 | CHAIN | /note="Non-structural protein 1" /id="PRO_0000338255" |
![]() ![]() ![]() |
181-818 | CHAIN | /note="Non-structural protein 2" /id="PRO_0000338256" |
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819-2740 | CHAIN | /note="Non-structural protein 3" /id="PRO_0000338257" |
![]() ![]() ![]() |
2741-3240 | CHAIN | /note="Non-structural protein 4" /id="PRO_0000338258" |
![]() ![]() ![]() |
3241-3546 | CHAIN | /note="3C-like proteinase" /id="PRO_0000338259" |
![]() ![]() ![]() |
3547-3836 | CHAIN | /note="Non-structural protein 6" /id="PRO_0000338260" |
![]() ![]() ![]() |
3837-3919 | CHAIN | /note="Non-structural protein 7" /id="PRO_0000338261" |
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3920-4117 | CHAIN | /note="Non-structural protein 8" /id="PRO_0000338262" |
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4118-4230 | CHAIN | /note="Non-structural protein 9" /id="PRO_0000338263" |
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4231-4369 | CHAIN | /note="Non-structural protein 10" /id="PRO_0000338264" |
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4370-4382 | CHAIN | /note="Non-structural protein 11" /id="PRO_0000338265" |
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1-2202 | TOPO_DOM | /note="Cytoplasmic" |
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2203-2223 | TRANSMEM | /note="Helical" |
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2224-2303 | TOPO_DOM | /note="Lumenal" |
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2304-2324 | TRANSMEM | /note="Helical" |
![]() ![]() ![]() |
2325-2350 | TOPO_DOM | /note="Cytoplasmic" |
![]() ![]() ![]() |
2351-2371 | TRANSMEM | /note="Helical" |
![]() ![]() ![]() |
2372-2754 | TOPO_DOM | /note="Lumenal" |
![]() ![]() ![]() |
2755-2775 | TRANSMEM | /note="Helical" |
![]() ![]() ![]() |
2776-2991 | TOPO_DOM | /note="Cytoplasmic" |
![]() ![]() ![]() |
2992-3012 | TRANSMEM | /note="Helical" |
![]() ![]() ![]() |
3013-3021 | TOPO_DOM | /note="Lumenal" |
![]() ![]() ![]() |
3022-3042 | TRANSMEM | /note="Helical" |
![]() ![]() ![]() |
3043-3053 | TOPO_DOM | /note="Cytoplasmic" |
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3054-3074 | TRANSMEM | /note="Helical" |
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3075-3076 | TOPO_DOM | /note="Lumenal" |
![]() ![]() ![]() |
3077-3097 | TRANSMEM | /note="Helical" |
![]() ![]() ![]() |
3098-3104 | TOPO_DOM | /note="Cytoplasmic" |
![]() ![]() ![]() |
3105-3125 | TRANSMEM | /note="Helical" |
![]() ![]() ![]() |
3126-3141 | TOPO_DOM | /note="Lumenal" |
![]() ![]() ![]() |
3142-3162 | TRANSMEM | /note="Helical" |
![]() ![]() ![]() |
3163-3563 | TOPO_DOM | /note="Cytoplasmic" |
![]() ![]() ![]() |
3564-3584 | TRANSMEM | /note="Helical" |
![]() ![]() ![]() |
3585-3585 | TOPO_DOM | /note="Lumenal" |
![]() ![]() ![]() |
3586-3606 | TRANSMEM | /note="Helical" |
![]() ![]() ![]() |
3607-3611 | TOPO_DOM | /note="Cytoplasmic" |
![]() ![]() ![]() |
3612-3632 | TRANSMEM | /note="Helical" |
![]() ![]() ![]() |
3633-3657 | TOPO_DOM | /note="Lumenal" |
![]() ![]() ![]() |
3658-3678 | TRANSMEM | /note="Helical" |
![]() ![]() ![]() |
3679-3684 | TOPO_DOM | /note="Cytoplasmic" |
![]() ![]() ![]() |
3685-3704 | TRANSMEM | /note="Helical" |
![]() ![]() ![]() |
3705-3727 | TOPO_DOM | /note="Lumenal" |
![]() ![]() ![]() |
3728-3748 | TRANSMEM | /note="Helical" |
![]() ![]() ![]() |
3749-3755 | TOPO_DOM | /note="Cytoplasmic" |
![]() ![]() ![]() |
3756-3776 | TRANSMEM | /note="Helical" |
![]() ![]() |
3777-4382 | TOPO_DOM | /note="Lumenal" |
![]() ![]() ![]() |
1003-1169 | DOMAIN | /note="Macro" |
![]() ![]() ![]() |
1611-1875 | DOMAIN | /note="Peptidase C16" |
![]() ![]() ![]() |
3241-3546 | DOMAIN | /note="Peptidase C30" |
![]() ![]() ![]() |
1729-1766 | ZN_FING | /note="C4-type" |
![]() ![]() ![]() |
4304-4320 | ZN_FING | |
![]() ![]() ![]() |
4347-4360 | ZN_FING | |
![]() ![]() ![]() |
2092-2371 | REGION | /note="HD1" |
![]() ![]() ![]() |
2755-3162 | REGION | /note="HD2" |
![]() ![]() ![]() |
3564-3776 | REGION | /note="HD3" |
![]() ![]() ![]() |
930-1001 | COMPBIAS | /note="Glu-rich" |
![]() ![]() ![]() |
2210-2213 | COMPBIAS | /note="Poly-Leu" |
![]() ![]() ![]() |
3766-3769 | COMPBIAS | /note="Poly-Cys" |
![]() ![]() ![]() |
1651-1651 | ACT_SITE | /note="For PL-PRO activity" |
![]() ![]() ![]() |
1812-1812 | ACT_SITE | /note="For PL-PRO activity" |
![]() ![]() ![]() |
3281-3281 | ACT_SITE | /note="For 3CL-PRO activity" |
![]() ![]() ![]() |
3385-3385 | ACT_SITE | /note="For 3CL-PRO activity" |
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4304-4304 | METAL | /note="Zinc" |
![]() ![]() ![]() |
4307-4307 | METAL | /note="Zinc" |
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4313-4313 | METAL | /note="Zinc" |
![]() ![]() ![]() |
4320-4320 | METAL | /note="Zinc" |
![]() ![]() ![]() |
4347-4347 | METAL | /note="Zinc" |
![]() ![]() ![]() |
4350-4350 | METAL | /note="Zinc" |
![]() ![]() ![]() |
4358-4358 | METAL | /note="Zinc" |