Contact Molecules for Homologous Proteins


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PID QueryLength Homolgous Sequence in PDB UniProt Query TITLE
1223523 164 29 P01185(NEU2_HUMAN) RecName: Full=Vasopressin-neurophysin 2-copeptin;AltName: Full=AVP-NPII;Contains: RecName: Full=Arg-vasopressin; AltName: Full=Arginine-vasopressin;Contains: RecName: Full=Neurophysin 2; AltName: Full=Neurophysin-II;Contains: RecName: Full=Copeptin;Flags: Precursor;
QUERYSEQ
MPDTMLPACFLGLLAFSSACYFQNCPRGGKRAMSDLELRQCLPCGPGGKGRCFGPSICCADELGCFVGTAEALRCQEENYLPSPCQSGQKACGSGGRCAAFGVCCNDESCVTEPECREGFHRRARASDRSNATQLDGPAGALLLRLVQLA
GAPEPFEPAQPDAY
[BLAST file for PDB] (plain) (bar) (multiple alignment) [BLAST for UniProt: (plain) (bar) (multiple alignment) (PSSM file) ]

UniProt Feature Tables [P01185(NEU2_HUMAN)]

164
region name description
1-19 SIGNAL
20-28 PEPTIDE /note="Arg-vasopressin" /id="PRO_0000020515"
32-124 CHAIN /note="Neurophysin 2" /id="PRO_0000020516"
126-164 PEPTIDE /note="Copeptin" /id="PRO_0000020517"
1-164 DISORDER predicted by DISOPRED

MONOMER
164
pdb_id a1 identity[%]2 description
2bn2 A 95.3 NEU2_BOVIN NEUROPHYSIN II
1.a1:asym_id for the homologue. 2.identity[%]2:sequence identity between the query and the homologue.
HETERO
164 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
1jk4[2] B Lys Vasopressin[6 aa] A 100.0
/94.9
14
/14
NEU2_BOVIN NEUROPHYSIN 2
1npo[5] B OXYTOCIN[9 aa] A 100.0
/95.1
16
/16
NEU2_BOVIN NEUROPHYSIN II
1npo[2] B OXYTOCIN[9 aa] C 100.0
/93.7
5
/5
NEU2_BOVIN NEUROPHYSIN II
1npo[2] C NEU2_BOVIN NEUROPHYSIN II[79 aa] A 92.3
/95.1
13
/13
NEU2_BOVIN NEUROPHYSIN II
1npo[2] C NEU2_BOVIN NEUROPHYSIN II[79 aa] A 100.0
/95.1
4
/4
NEU2_BOVIN NEUROPHYSIN II
1npo[2] C NEU2_BOVIN NEUROPHYSIN II[79 aa] A 100.0
/95.1
2
/2
NEU2_BOVIN NEUROPHYSIN II
1npo[2] A NEU2_BOVIN NEUROPHYSIN II[81 aa] C 100.0
/93.7
4
/4
NEU2_BOVIN NEUROPHYSIN II
1npo[2] A NEU2_BOVIN NEUROPHYSIN II[81 aa] C 100.0
/93.7
4
/4
NEU2_BOVIN NEUROPHYSIN II
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
COMPOUND
164 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
2bn2[4] E PHE
PHENYLALANINE[11 atoms]
A 100.0
/95.3
7
/7
NEU2_BOVIN NEUROPHYSIN II
2hnu[12] F PHE
PHENYLALANINE[11 atoms]
A 100.0
/82.3
7
/7
NEU1_BOVIN Oxytocin-neurophysin 1
2bn2[4] F TYR
TYROSINE[12 atoms]
A 100.0
/95.3
8
/8
NEU2_BOVIN NEUROPHYSIN II
2hnu[12] G TYR
TYROSINE[13 atoms]
A 100.0
/82.3
9
/9
NEU1_BOVIN Oxytocin-neurophysin 1
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
METAL
164 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
1jk4[2] C CD
CADMIUM ION[1 atoms]
A 100.0
/94.9
1
/1
NEU2_BOVIN NEUROPHYSIN 2
1jk4[2] D CD
CADMIUM ION[1 atoms]
A 100.0
/94.9
1
/1
NEU2_BOVIN NEUROPHYSIN 2
1jk4[2] E CD
CADMIUM ION[1 atoms]
A 100.0
/94.9
1
/1
NEU2_BOVIN NEUROPHYSIN 2
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
HOMO
164 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
1jk4[4] A NEU2_BOVIN NEUROPHYSIN 2[79 aa] A 92.3
/94.9
13
/13
NEU2_BOVIN NEUROPHYSIN 2
1npo[2] A NEU2_BOVIN NEUROPHYSIN II[81 aa] A 100.0
/95.1
7
/7
NEU2_BOVIN NEUROPHYSIN II
2bn2[4] B NEU2_BOVIN NEUROPHYSIN II[79 aa] A 91.7
/95.3
12
/12
NEU2_BOVIN NEUROPHYSIN II
2hnu[18] B NEU1_BOVIN Oxytocin-neurophysin 1[81 aa] A 66.7
/82.3
15
/15
NEU1_BOVIN Oxytocin-neurophysin 1
2lbh[2] B NEU1_BOVIN Neurophysin 1[92 aa] A 66.7
/80.0
15
/15
NEU1_BOVIN Neurophysin 1
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.