Contact Molecules for Homologous Proteins | ||||
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PID | QueryLength | Homolgous Sequence in PDB | UniProt Query | TITLE |
3768 | 422 | 112 | P59595(NCAP_SARS) | RecName: Full=Nucleoprotein ;AltName: Full=Nucleocapsid protein ; Short=NC ; Short=Protein N ; |
QUERYSEQ |
MSDNGPQSNQRSAPRITFGGPTDSTDNNQNGGRNGARPKQRRPQGLPNNTASWFTALTQHGKEELRFPRGQGVPINTNSGPDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTR NPNNNAATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYK HWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTLLPAADMDDFSRQLQNSMSGASADSTQA |
422 | region | name | description |
1-422 | CHAIN | /note="Nucleoprotein" /id="PRO_0000106003" | |
49-176 | DOMAIN | /note="CoV N NTD" | |
248-365 | DOMAIN | /note="CoV N CTD" | |
1-52 | REGION | /note="Disordered" | |
42-187 | REGION | /note="RNA-binding" | |
45-181 | REGION | /note="RNA-binding" | |
167-214 | REGION | /note="Disordered" | |
177-204 | REGION | /note="SR region" | |
234-287 | REGION | /note="Disordered" | |
259-362 | REGION | /note="Dimerization" | |
362-422 | REGION | /note="Disordered" | |
1-35 | COMPBIAS | /note="Polar residues" | |
178-209 | COMPBIAS | /note="Polar residues" | |
234-252 | COMPBIAS | /note="Polar residues" | |
265-287 | COMPBIAS | /note="Polar residues" | |
363-383 | COMPBIAS | /note="Basic and acidic residues" | |
404-422 | COMPBIAS | /note="Polar residues" | |
93-93 | BINDING | /ligand="RNA" /ligand_id="ChEBI:CHEBI:33697" | |
108-108 | BINDING | /ligand="RNA" /ligand_id="ChEBI:CHEBI:33697" | |
150-150 | BINDING | /ligand="RNA" /ligand_id="ChEBI:CHEBI:33697" | |
1-422 | DISORDER | predicted by DISOPRED |
MONOMER | |||||||
422 | |||||||
pdb_id | a1 | identity[%]2 | description | ||||
1ssk | A | 99.3 | NCAP_CVHSA Nucleocapsid protein | ||||
2jw8 | A | 100.0 | NCAP_CVHSA Nucleocapsid protein | ||||
1.a1:asym_id for the homologue. 2.identity[%]2:sequence identity between the query and the homologue. |
HETERO | |||||||
422 | pdb_id | contact mol | homologue | ||||
a3 | description | a4 | identity[%]5 | Ncon6 | description | ||
7n0i[8] | H | Single-domain antibody E2[136 aa] | A | 90.0 /95.8 |
10 /10 |
NCAP_SARS2 Nucleoprotein | |
7ylb[8] | C | NC2[84 aa] | A | 92.3 /95.4 |
13 /13 |
NCAP_SARS2 Nucleoprotein | |
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue. | |||||||
COMPOUND | |||||||
422 | pdb_id | contact mol | homologue | ||||
a3 | description | a4 | identity[%]5 | Ncon6 | description | ||
7o35[3] | E |
GTP
GUANOSINE-5'-TRIPHOSPHATE[32 atoms] |
C | 100.0 /95.5 |
4 /4 |
NCAP_SARS2 Nucleoprotein | |
7o35[3] | E |
GTP
GUANOSINE-5'-TRIPHOSPHATE[32 atoms] |
D | 100.0 /95.4 |
4 /4 |
NCAP_SARS2 Nucleoprotein | |
7uxz[1] | G |
GKP
(2R,3R)-2,3-bis{[(2E)-3-(3,4-dihydroxyphenyl)prop-.. |
A | 100.0 /95.4 |
8 /8 |
NCAP_SARS2 Nucleoprotein | |
7xxk[3] | H |
5GP
GUANOSINE-5'-MONOPHOSPHATE[24 atoms] |
A | 100.0 /95.4 |
3 /3 |
NCAP_SARS2 Nucleoprotein | |
7xxk[3] | I |
5GP
GUANOSINE-5'-MONOPHOSPHATE[24 atoms] |
A | 100.0 /95.4 |
3 /3 |
NCAP_SARS2 Nucleoprotein | |
7xxk[1] | R |
GUN
GUANINE[11 atoms] |
C | 100.0 /95.3 |
3 /3 |
NCAP_SARS2 Nucleoprotein | |
7xxk[1] | R |
GUN
GUANINE[11 atoms] |
D | 100.0 /95.4 |
2 /2 |
NCAP_SARS2 Nucleoprotein | |
7xxk[1] | FA |
GMP
GUANOSINE[20 atoms] |
E | 100.0 /95.4 |
3 /3 |
NCAP_SARS2 Nucleoprotein | |
7xxk[1] | FA |
GMP
GUANOSINE[20 atoms] |
F | 100.0 /95.3 |
3 /3 |
NCAP_SARS2 Nucleoprotein | |
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue. | |||||||
METAL | |||||||
422 | pdb_id | contact mol | homologue | ||||
a3 | description | a4 | identity[%]5 | Ncon6 | description | ||
7n0i[1] | N |
MG
MAGNESIUM ION[1 atoms] |
D | 100.0 /95.8 |
3 /3 |
NCAP_SARS2 Nucleoprotein | |
6wji[6] | G |
CL
CHLORIDE ION[1 atoms] |
A | 100.0 /95.4 |
1 /1 |
NCAP_SARS2 Nucleoprotein | |
6wji[4] | H |
CL
CHLORIDE ION[1 atoms] |
A | 100.0 /95.4 |
1 /1 |
NCAP_SARS2 Nucleoprotein | |
6wji[9] | K |
CL
CHLORIDE ION[1 atoms] |
D | 100.0 /95.4 |
2 /2 |
NCAP_SARS2 Nucleoprotein | |
7f2b[1] | E |
CL
CHLORIDE ION[1 atoms] |
B | 100.0 /95.3 |
1 /1 |
NCAP_SARS2 Nucleoprotein | |
7uxz[1] | L |
CL
CHLORIDE ION[1 atoms] |
E | 100.0 /95.4 |
1 /1 |
NCAP_SARS2 Nucleoprotein | |
7xxk[1] | O |
CL
CHLORIDE ION[1 atoms] |
B | 100.0 /95.3 |
3 /3 |
NCAP_SARS2 Nucleoprotein | |
7xxk[1] | P |
CL
CHLORIDE ION[1 atoms] |
B | 100.0 /95.3 |
1 /1 |
NCAP_SARS2 Nucleoprotein | |
7xxk[1] | V |
CL
CHLORIDE ION[1 atoms] |
C | 100.0 /95.3 |
2 /2 |
NCAP_SARS2 Nucleoprotein | |
7xxk[1] | X |
CL
CHLORIDE ION[1 atoms] |
C | 100.0 /95.3 |
2 /2 |
NCAP_SARS2 Nucleoprotein | |
7xxk[2] | Y |
CL
CHLORIDE ION[1 atoms] |
C | 100.0 /95.3 |
2 /2 |
NCAP_SARS2 Nucleoprotein | |
7xxk[1] | EA |
CL
CHLORIDE ION[1 atoms] |
E | 100.0 /95.4 |
3 /3 |
NCAP_SARS2 Nucleoprotein | |
7xxk[1] | IA |
CL
CHLORIDE ION[1 atoms] |
F | 100.0 /95.3 |
1 /1 |
NCAP_SARS2 Nucleoprotein | |
7uxz[3] | J |
NA
SODIUM ION[1 atoms] |
A | 100.0 /95.4 |
2 /2 |
NCAP_SARS2 Nucleoprotein | |
7xxk[5] | J |
K
POTASSIUM ION[1 atoms] |
A | 100.0 /95.4 |
3 /3 |
NCAP_SARS2 Nucleoprotein | |
7xxk[2] | K |
K
POTASSIUM ION[1 atoms] |
A | 66.7 /95.4 |
3 /3 |
NCAP_SARS2 Nucleoprotein | |
7xxk[1] | L |
K
POTASSIUM ION[1 atoms] |
A | 100.0 /95.4 |
3 /3 |
NCAP_SARS2 Nucleoprotein | |
7xxk[1] | M |
K
POTASSIUM ION[1 atoms] |
A | 100.0 /95.4 |
2 /2 |
NCAP_SARS2 Nucleoprotein | |
7xxk[5] | N |
K
POTASSIUM ION[1 atoms] |
A | 100.0 /95.4 |
1 /1 |
NCAP_SARS2 Nucleoprotein | |
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue. | |||||||
HOMO | |||||||
422 | pdb_id | contact mol | homologue | ||||
a3 | description | a4 | identity[%]5 | Ncon6 | description | ||
2cjr[114] | B | NCAP_CVHSA NUCLEOCAPSID PROTEIN[113 aa] | A | 100.0 /100.0 |
52 /52 |
NCAP_CVHSA NUCLEOCAPSID PROTEIN | |
2gib[2] | A | NCAP_CVHSA Nucleocapsid protein[97 aa] | A | 100.0 /100.0 |
8 /8 |
NCAP_CVHSA Nucleocapsid protein | |
2gib[2] | A | NCAP_CVHSA Nucleocapsid protein[97 aa] | A | 100.0 /100.0 |
6 /6 |
NCAP_CVHSA Nucleocapsid protein | |
2gib[2] | B | NCAP_CVHSA Nucleocapsid protein[96 aa] | A | 100.0 /100.0 |
1 /1 |
NCAP_CVHSA Nucleocapsid protein | |
2gib[2] | A | NCAP_CVHSA Nucleocapsid protein[97 aa] | B | 100.0 /100.0 |
3 /3 |
NCAP_CVHSA Nucleocapsid protein | |
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue. | |||||||
PRECIPITANT | |||||||
422 | pdb_id | contact mol | homologue | ||||
a3 | description | a4 | identity[%]5 | Ncon6 | description | ||
2ofz[1] | B |
EDO
1,2-ETHANEDIOL[4 atoms] |
A | 100.0 /100.0 |
2 /2 |
NCAP_CVHSA Nucleocapsid protein | |
7f2b[2] | C |
PO4
PHOSPHATE ION[5 atoms] |
A | 100.0 /95.3 |
1 /1 |
NCAP_SARS2 Nucleoprotein | |
7f2b[2] | D |
PO4
PHOSPHATE ION[5 atoms] |
A | 100.0 /95.3 |
2 /2 |
NCAP_SARS2 Nucleoprotein | |
7f2b[1] | F |
PO4
PHOSPHATE ION[5 atoms] |
B | 80.0 /95.3 |
5 /5 |
NCAP_SARS2 Nucleoprotein | |
7f2b[1] | H |
PO4
PHOSPHATE ION[5 atoms] |
B | 100.0 /95.3 |
3 /3 |
NCAP_SARS2 Nucleoprotein | |
7f2e[4] | M |
PO4
PHOSPHATE ION[5 atoms] |
G | 100.0 /95.3 |
3 /3 |
NCAP_SARS2 Nucleoprotein | |
7f2e[4] | M |
PO4
PHOSPHATE ION[5 atoms] |
H | 100.0 /95.3 |
1 /1 |
NCAP_SARS2 Nucleoprotein | |
7xwx[3] | I |
PO4
PHOSPHATE ION[5 atoms] |
A | 100.0 /96.0 |
2 /2 |
NCAP_SARS2 Nucleoprotein | |
2gib[5] | C |
SO4
SULFATE ION[5 atoms] |
A | 100.0 /100.0 |
2 /2 |
NCAP_CVHSA Nucleocapsid protein | |
6wzq[5] | E |
SO4
SULFATE ION[5 atoms] |
A | 100.0 /95.6 |
2 /2 |
NCAP_SARS2 Nucleoprotein | |
6wzq[1] | F |
SO4
SULFATE ION[5 atoms] |
A | 100.0 /95.6 |
1 /1 |
NCAP_SARS2 Nucleoprotein | |
6wzq[3] | G |
SO4
SULFATE ION[5 atoms] |
B | 100.0 /95.6 |
1 /1 |
NCAP_SARS2 Nucleoprotein | |
6wzq[1] | I |
SO4
SULFATE ION[5 atoms] |
C | 100.0 /95.7 |
3 /3 |
NCAP_SARS2 Nucleoprotein | |
7c22[2] | E |
ACT
ACETATE ION[4 atoms] |
A | 100.0 /95.4 |
2 /2 |
NCAP_SARS2 Nucleoprotein | |
7c22[2] | E |
ACT
ACETATE ION[4 atoms] |
B | 100.0 /95.6 |
1 /1 |
NCAP_SARS2 Nucleoprotein | |
7n0i[1] | M |
ACT
ACETATE ION[4 atoms] |
C | 100.0 /95.8 |
3 /3 |
NCAP_SARS2 Nucleoprotein | |
7n0i[1] | M |
ACT
ACETATE ION[4 atoms] |
D | 100.0 /95.8 |
2 /2 |
NCAP_SARS2 Nucleoprotein | |
7n0i[1] | O |
ACT
ACETATE ION[4 atoms] |
L | 100.0 /95.8 |
2 /2 |
NCAP_SARS2 Nucleoprotein | |
7uxx[1] | I |
ACT
ACETATE ION[4 atoms] |
B | 100.0 /95.4 |
3 /3 |
NCAP_SARS2 Nucleoprotein | |
7uxx[1] | I |
ACT
ACETATE ION[4 atoms] |
D | 100.0 /95.4 |
2 /2 |
NCAP_SARS2 Nucleoprotein | |
7c22[1] | F |
PEG
DI(HYDROXYETHYL)ETHER[7 atoms] |
A | 100.0 /95.4 |
3 /3 |
NCAP_SARS2 Nucleoprotein | |
7de1[1] | C |
PEG
DI(HYDROXYETHYL)ETHER[7 atoms] |
B | 100.0 /95.7 |
5 /5 |
NCAP_SARS2 Nucleoprotein | |
7de1[2] | D |
PEG
DI(HYDROXYETHYL)ETHER[7 atoms] |
B | 100.0 /95.7 |
2 /2 |
NCAP_SARS2 Nucleoprotein | |
7uxz[2] | H |
PEG
DI(HYDROXYETHYL)ETHER[7 atoms] |
A | 100.0 /95.4 |
4 /4 |
NCAP_SARS2 Nucleoprotein | |
7uxz[1] | H |
PEG
DI(HYDROXYETHYL)ETHER[7 atoms] |
B | 100.0 /95.4 |
1 /1 |
NCAP_SARS2 Nucleoprotein | |
7o36[1] | F |
GOL
GLYCEROL[6 atoms] |
A | 100.0 /95.5 |
3 /3 |
NCAP_SARS2 Nucleoprotein | |
7o36[1] | F |
GOL
GLYCEROL[6 atoms] |
B | 100.0 /95.4 |
9 /9 |
NCAP_SARS2 Nucleoprotein | |
7uxx[1] | G |
GOL
GLYCEROL[6 atoms] |
A | 100.0 /95.4 |
4 /4 |
NCAP_SARS2 Nucleoprotein | |
7uxx[4] | H |
GOL
GLYCEROL[6 atoms] |
B | 100.0 /95.4 |
1 /1 |
NCAP_SARS2 Nucleoprotein | |
7uxx[1] | G |
GOL
GLYCEROL[6 atoms] |
C | 100.0 /95.4 |
2 /2 |
NCAP_SARS2 Nucleoprotein | |
7uxx[3] | J |
GOL
GLYCEROL[6 atoms] |
F | 75.0 /95.5 |
4 /4 |
NCAP_SARS2 Nucleoprotein | |
7xxk[1] | G |
SCN
THIOCYANATE ION[3 atoms] |
A | 100.0 /95.4 |
5 /5 |
NCAP_SARS2 Nucleoprotein | |
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue. |