Contact Molecules for Homologous Proteins

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PID QueryLength Homolgous Sequence in PDB UniProt Query TITLE
3014331 302 7 P56962(STX17_HUMAN) RecName: Full=Syntaxin-17 ;
QUERYSEQ 
MSEDEEKVKLRRLEPAIQKFIKIVIPTDLERLRKHQINIEKYQRCRIWDKLHEEHINAGRTVQQLRSNIREIEKLCLKVRKDDLVLLKRMIDPVKEEASAATAEFLQLHLESVEELKKQFNDEETLLQPPLTRSMTVGGAFHTTEAEASS
QSLTQIYALPEIPQDQNAAESWETLEADLIELSQLVTDFSLLVNSQQEKIDSIADHVNSAAVNVEEGTKNLGKAAKYKLAALPVAGALIGGMVGGPIGLLAGFKVAGIAAALGGGVLGFTGGKLIQRKKQKMMEKLTSSCPDLPSQTDKK
CS
[BLAST file for PDB] (plain) (bar) (multiple alignment) [BLAST for UniProt: (plain) (bar) (multiple alignment) (PSSM file) ]

UniProt Feature Tables [P56962(STX17_HUMAN)]

302
region name description
2-302 CHAIN /note="Syntaxin-17" /id="PRO_0000210228"
2-228 TOPO_DOM /note="Cytoplasmic"
229-249 TRANSMEM /note="Helical"
250-254 TOPO_DOM /note="Lumenal"
255-275 TRANSMEM /note="Helical"
276-302 TOPO_DOM /note="Cytoplasmic"
162-224 DOMAIN /note="t-SNARE coiled-coil homology"
229-275 REGION /note="Necessary and sufficient for localization to autophagosome"
53-123 COILED
1-302 DISORDER predicted by DISOPRED

MONOMER
302
pdb_id a1 identity[%]2 description
7bv6 F 100.0 STX17_HUMAN Syntaxin-17
7bv6 B 100.0 STX17_HUMAN Syntaxin-17
7bv6 N 100.0 STX17_HUMAN Syntaxin-17
7bv6 V 100.0 STX17_HUMAN Syntaxin-17
4wy4 B 100.0 STX17_HUMAN Syntaxin-17
7bv6 J 100.0 STX17_HUMAN Syntaxin-17
7bv6 R 100.0 STX17_HUMAN Syntaxin-17 
1.a1:asym_id for the homologue. 2.identity[%]2:sequence identity between the query and the homologue.
HETERO
302 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
4wy4 A VAMP8_HUMAN Vesicle-associated membrane protein 8[64 aa] B 100.0
/100.0		 30
/30		 STX17_HUMAN Syntaxin-17
7bv6 A VAMP8_HUMAN Vesicle-associated membrane protein 8[66 aa] B 100.0
/100.0		 33
/33		 STX17_HUMAN Syntaxin-17
7bv6 E VAMP8_HUMAN Vesicle-associated membrane protein 8[65 aa] F 100.0
/100.0		 31
/31		 STX17_HUMAN Syntaxin-17
7bv6 I VAMP8_HUMAN Vesicle-associated membrane protein 8[66 aa] J 100.0
/100.0		 30
/30		 STX17_HUMAN Syntaxin-17
7bv6 M VAMP8_HUMAN Vesicle-associated membrane protein 8[66 aa] N 100.0
/100.0		 30
/30		 STX17_HUMAN Syntaxin-17
7bv6 Q VAMP8_HUMAN Vesicle-associated membrane protein 8[61 aa] R 100.0
/100.0		 29
/29		 STX17_HUMAN Syntaxin-17
7bv6 U VAMP8_HUMAN Vesicle-associated membrane protein 8[66 aa] V 100.0
/100.0		 30
/30		 STX17_HUMAN Syntaxin-17
4wy4 C SNP29_HUMAN Synaptosomal-associated protein 29[78 aa] B 100.0
/100.0		 24
/24		 STX17_HUMAN Syntaxin-17
7bv6 C SNP29_HUMAN Synaptosomal-associated protein 29[72 aa] B 100.0
/100.0		 24
/24		 STX17_HUMAN Syntaxin-17
7bv6 G SNP29_HUMAN Synaptosomal-associated protein 29[74 aa] F 100.0
/100.0		 22
/22		 STX17_HUMAN Syntaxin-17
7bv6 K SNP29_HUMAN Synaptosomal-associated protein 29[73 aa] J 100.0
/100.0		 24
/24		 STX17_HUMAN Syntaxin-17
7bv6 O SNP29_HUMAN Synaptosomal-associated protein 29[73 aa] N 100.0
/100.0		 23
/23		 STX17_HUMAN Syntaxin-17
7bv6 S SNP29_HUMAN Synaptosomal-associated protein 29[74 aa] R 100.0
/100.0		 25
/25		 STX17_HUMAN Syntaxin-17
7bv6 W SNP29_HUMAN Synaptosomal-associated protein 29[72 aa] V 100.0
/100.0		 24
/24		 STX17_HUMAN Syntaxin-17
4wy4 D SNP29_HUMAN Synaptosomal-associated protein 29[65 aa] B 100.0
/100.0		 4
/4		 STX17_HUMAN Syntaxin-17
7bv6 D SNP29_HUMAN Synaptosomal-associated protein 29[67 aa] B 100.0
/100.0		 5
/5		 STX17_HUMAN Syntaxin-17
7bv6 H SNP29_HUMAN Synaptosomal-associated protein 29[68 aa] F 100.0
/100.0		 4
/4		 STX17_HUMAN Syntaxin-17
7bv6 L SNP29_HUMAN Synaptosomal-associated protein 29[67 aa] J 100.0
/100.0		 4
/4		 STX17_HUMAN Syntaxin-17
7bv6 P SNP29_HUMAN Synaptosomal-associated protein 29[65 aa] N 100.0
/100.0		 5
/5		 STX17_HUMAN Syntaxin-17
7bv6 T SNP29_HUMAN Synaptosomal-associated protein 29[67 aa] R 100.0
/100.0		 5
/5		 STX17_HUMAN Syntaxin-17
7bv6 X SNP29_HUMAN Synaptosomal-associated protein 29[65 aa] V 100.0
/100.0		 5
/5		 STX17_HUMAN Syntaxin-17
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.