Contact Molecules for Homologous Proteins | ||||
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PID | QueryLength | Homolgous Sequence in PDB | UniProt Query | TITLE |
3014331 | 302 | 7 | P56962(STX17_HUMAN) | RecName: Full=Syntaxin-17 ; |
QUERYSEQ |
MSEDEEKVKLRRLEPAIQKFIKIVIPTDLERLRKHQINIEKYQRCRIWDKLHEEHINAGRTVQQLRSNIREIEKLCLKVRKDDLVLLKRMIDPVKEEASAATAEFLQLHLESVEELKKQFNDEETLLQPPLTRSMTVGGAFHTTEAEASS QSLTQIYALPEIPQDQNAAESWETLEADLIELSQLVTDFSLLVNSQQEKIDSIADHVNSAAVNVEEGTKNLGKAAKYKLAALPVAGALIGGMVGGPIGLLAGFKVAGIAAALGGGVLGFTGGKLIQRKKQKMMEKLTSSCPDLPSQTDKK CS |
302 |
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region | name | description |
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2-302 | CHAIN | /note="Syntaxin-17" /id="PRO_0000210228" |
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2-228 | TOPO_DOM | /note="Cytoplasmic" |
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229-249 | TRANSMEM | /note="Helical" |
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250-254 | TOPO_DOM | /note="Lumenal" |
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255-275 | TRANSMEM | /note="Helical" |
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276-302 | TOPO_DOM | /note="Cytoplasmic" |
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162-224 | DOMAIN | /note="t-SNARE coiled-coil homology" |
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229-275 | REGION | /note="Necessary and sufficient for localization to autophagosome" |
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53-123 | COILED | |
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1-302 | DISORDER | predicted by DISOPRED |
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302 | |||||||
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pdb_id | a1 | identity[%]2 | description | |||
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F | 100.0 | STX17_HUMAN Syntaxin-17 | |||
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B | 100.0 | STX17_HUMAN Syntaxin-17 | |||
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N | 100.0 | STX17_HUMAN Syntaxin-17 | |||
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V | 100.0 | STX17_HUMAN Syntaxin-17 | |||
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B | 100.0 | STX17_HUMAN Syntaxin-17 | |||
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J | 100.0 | STX17_HUMAN Syntaxin-17 | |||
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R | 100.0 | STX17_HUMAN Syntaxin-17 | |||
1.a1:asym_id for the homologue. 2.identity[%]2:sequence identity between the query and the homologue. |
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302 | pdb_id | contact mol | homologue | ||||
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a3 | description | a4 | identity[%]5 | Ncon6 | description | |
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A | VAMP8_HUMAN Vesicle-associated membrane protein 8[64 aa] | B | 100.0 /100.0 |
30 /30 |
STX17_HUMAN Syntaxin-17 |
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A | VAMP8_HUMAN Vesicle-associated membrane protein 8[66 aa] | B | 100.0 /100.0 |
33 /33 |
STX17_HUMAN Syntaxin-17 |
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E | VAMP8_HUMAN Vesicle-associated membrane protein 8[65 aa] | F | 100.0 /100.0 |
31 /31 |
STX17_HUMAN Syntaxin-17 |
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I | VAMP8_HUMAN Vesicle-associated membrane protein 8[66 aa] | J | 100.0 /100.0 |
30 /30 |
STX17_HUMAN Syntaxin-17 |
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M | VAMP8_HUMAN Vesicle-associated membrane protein 8[66 aa] | N | 100.0 /100.0 |
30 /30 |
STX17_HUMAN Syntaxin-17 |
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Q | VAMP8_HUMAN Vesicle-associated membrane protein 8[61 aa] | R | 100.0 /100.0 |
29 /29 |
STX17_HUMAN Syntaxin-17 |
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U | VAMP8_HUMAN Vesicle-associated membrane protein 8[66 aa] | V | 100.0 /100.0 |
30 /30 |
STX17_HUMAN Syntaxin-17 |
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C | SNP29_HUMAN Synaptosomal-associated protein 29[78 aa] | B | 100.0 /100.0 |
24 /24 |
STX17_HUMAN Syntaxin-17 |
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C | SNP29_HUMAN Synaptosomal-associated protein 29[72 aa] | B | 100.0 /100.0 |
24 /24 |
STX17_HUMAN Syntaxin-17 |
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G | SNP29_HUMAN Synaptosomal-associated protein 29[74 aa] | F | 100.0 /100.0 |
22 /22 |
STX17_HUMAN Syntaxin-17 |
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K | SNP29_HUMAN Synaptosomal-associated protein 29[73 aa] | J | 100.0 /100.0 |
24 /24 |
STX17_HUMAN Syntaxin-17 |
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O | SNP29_HUMAN Synaptosomal-associated protein 29[73 aa] | N | 100.0 /100.0 |
23 /23 |
STX17_HUMAN Syntaxin-17 |
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S | SNP29_HUMAN Synaptosomal-associated protein 29[74 aa] | R | 100.0 /100.0 |
25 /25 |
STX17_HUMAN Syntaxin-17 |
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W | SNP29_HUMAN Synaptosomal-associated protein 29[72 aa] | V | 100.0 /100.0 |
24 /24 |
STX17_HUMAN Syntaxin-17 |
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D | SNP29_HUMAN Synaptosomal-associated protein 29[65 aa] | B | 100.0 /100.0 |
4 /4 |
STX17_HUMAN Syntaxin-17 |
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D | SNP29_HUMAN Synaptosomal-associated protein 29[67 aa] | B | 100.0 /100.0 |
5 /5 |
STX17_HUMAN Syntaxin-17 |
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H | SNP29_HUMAN Synaptosomal-associated protein 29[68 aa] | F | 100.0 /100.0 |
4 /4 |
STX17_HUMAN Syntaxin-17 |
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L | SNP29_HUMAN Synaptosomal-associated protein 29[67 aa] | J | 100.0 /100.0 |
4 /4 |
STX17_HUMAN Syntaxin-17 |
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P | SNP29_HUMAN Synaptosomal-associated protein 29[65 aa] | N | 100.0 /100.0 |
5 /5 |
STX17_HUMAN Syntaxin-17 |
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T | SNP29_HUMAN Synaptosomal-associated protein 29[67 aa] | R | 100.0 /100.0 |
5 /5 |
STX17_HUMAN Syntaxin-17 |
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X | SNP29_HUMAN Synaptosomal-associated protein 29[65 aa] | V | 100.0 /100.0 |
5 /5 |
STX17_HUMAN Syntaxin-17 |
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue. |